Sequence N-term cleavage window C-term cleavage window Amino acid before First amino acid Second amino acid Second last amino acid Last amino acid Amino acid after A Count R Count N Count D Count C Count Q Count E Count G Count H Count I Count L Count K Count M Count F Count P Count S Count T Count W Count Y Count V Count U Count O Count Length Missed cleavages Mass Proteins Leading razor protein Start position End position Gene names Protein names Unique (Groups) Unique (Proteins) Charges PEP Score Experiment BAZ1BKO_exp1 Experiment BAZ1BKO_exp3 Ratio H/L Ratio H/L normalized Ratio H/L variability [%] Ratio H/L count Ratio H/L iso-count Ratio H/L type Ratio H/L BAZ1BKO_exp1 Ratio H/L normalized BAZ1BKO_exp1 Ratio H/L variability [%] BAZ1BKO_exp1 Ratio H/L count BAZ1BKO_exp1 Ratio H/L iso-count BAZ1BKO_exp1 Ratio H/L type BAZ1BKO_exp1 Ratio H/L BAZ1BKO_exp3 Ratio H/L normalized BAZ1BKO_exp3 Ratio H/L variability [%] BAZ1BKO_exp3 Ratio H/L count BAZ1BKO_exp3 Ratio H/L iso-count BAZ1BKO_exp3 Ratio H/L type BAZ1BKO_exp3 Intensity Intensity L Intensity H Intensity BAZ1BKO_exp1 Intensity L BAZ1BKO_exp1 Intensity H BAZ1BKO_exp1 Intensity BAZ1BKO_exp3 Intensity L BAZ1BKO_exp3 Intensity H BAZ1BKO_exp3 Reverse Potential contaminant id Protein group IDs Mod. peptide IDs Evidence IDs MS/MS IDs Best MS/MS Oxidation (M) site IDs MS/MS Count AAAAAAAAAPAAAATAPTTAATTAATAAQ GLKKRDKKNKTKKTKAAAAAAAAAPAAAAT TAPTTAATTAATAAQ_______________ K A A A Q - 20 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 6 0 0 0 0 0 29 0 2367.203 P37108;H0YLW0 P37108 108 136 SRP14 Signal recognition particle 14 kDa protein yes no 2 0.037108 30.543 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3091500 0 0 3091500 0 0 0 0 0 0 1326 0 0 0 0 1 AAAAAAALQAK TILRQARNHKLRVDKAAAAAAALQAKSDEK RVDKAAAAAAALQAKSDEKAAVAGKKPVVG K A A A K S 8 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 11 0 955.54508 P36578;Q59GY2;H3BM89;B4DMJ6;H3BU31 P36578 354 364 RPL4 60S ribosomal protein L4 yes no 1;2 6.5362E-09 160.78 5 2 0.69825 1.0125 6.5487 7 Median 0.75931 1.0063 5.8618 5 0 Median 0.67314 1.0656 0.057621 2 0 Median 2291000000 1324500000 966450000 2083200000 1198400000 884780000 207730000 126050000 81673000 1 1325 1 1;2;3;4;5;6;7 1;2;3;4;5;6;7;8;9;10;11;12;13 4 13 AAAAAAAPSGGGGGGEEERLEEK ______________________________ SGGGGGGEEERLEEKSEDQDLQGLKDKPLK M A A E K S 7 1 0 0 0 0 5 6 0 0 1 1 0 0 1 1 0 0 0 0 0 0 23 1 2083.977 A0A140VKC4;B5MCB4 A0A140VKC4 2 24 MECP2 yes no 2 0.00024783 81.992 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1908100 1908100 0 1908100 1908100 0 0 0 0 2 512 2 8;9;10 14;15;16;17 14 4 AAAAAATAPPSPGPAQPGPR PPAPVAAAAPARAPRAAAAAATAPPSPGPA ATAPPSPGPAQPGPRAQRAAPLAAPPPAPA R A A P R A 8 1 0 0 0 1 0 2 0 0 0 0 0 0 6 1 1 0 0 0 0 0 20 0 1754.9064 Q6SPF0 Q6SPF0 151 170 SAMD1 Atherin yes yes 2 4.284E-19 141.38 4 2 0.39873 0.54279 22.608 6 Median 0.48083 0.64014 16.973 4 0 Median 0.30776 0.44029 5.4982 2 0 Median 45010000 32934000 12076000 20567000 14786000 5780600 24443000 18148000 6295200 3 1599 3 11;12;13;14;15;16 18;19;20;21;22;23;24;25;26;27 20 10 AAAAAVGNAVPCGARPCGVRPDGQPK ______________________________ CGARPCGVRPDGQPKPGPQPRALLAAGPAL M A A P K P 7 2 1 1 2 1 0 4 0 0 0 1 0 0 4 0 0 0 0 3 0 0 26 2 2546.2594 A0A024R7N2;Q9HD20 A0A024R7N2 2 27 ATP13A1 Manganese-transporting ATPase 13A1 yes no 3 0.013685 52.72 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 596090 596090 0 596090 596090 0 0 0 0 4 181 4 17 28 28 1 AAAAPFQTSQASASAPR GRPPIATFSANPEAKAAAAPFQTSQASASA AAPFQTSQASASAPRHQPASASSTAASPAH K A A P R H 7 1 0 0 0 2 0 0 0 0 0 0 0 1 2 3 1 0 0 0 0 0 17 0 1630.8063 Q96L91 Q96L91 1519 1535 EP400 E1A-binding protein p400 yes yes 2 3.5479E-05 77.279 3 1 0.80582 1.0596 35.825 2 Median 0.60448 0.82247 NaN 1 0 Median 1.0742 1.3651 NaN 1 0 Median 7823600 4502100 3321500 3142000 1977000 1165000 4681600 2525100 2156500 5 1692 5 18;19;20;21 29;30;31;32 32 4 AAADGGGPGGASVGTEEDGGGVGHR ______________________________ ASVGTEEDGGGVGHRTVYLFDRREKESELG M A A H R T 4 1 0 2 0 0 2 10 1 0 0 0 0 0 1 1 1 0 0 2 0 0 25 0 2136.9421 A6NHR9 A6NHR9 2 26 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 1.0754E-68 196.45 3 2 1.0729 1.5313 56.843 4 Median 0.65028 0.88924 29.083 2 0 Median 1.4947 2.2703 7.9014 2 0 Median 47931000 22590000 25340000 12317000 7648200 4668600 35614000 14942000 20672000 6 568 6 22;23;24;25;26 33;34;35;36;37;38;39;40;41 35 9 AAAEELQEAAGAGDGATENGVQPPK GDKSSSSGKKSLKRKAAAEELQEAAGAGDG GAGDGATENGVQPPKAAAFPPGFSISEIKN K A A P K A 7 0 1 1 0 2 4 4 0 0 1 1 0 0 2 0 1 0 0 1 0 0 25 0 2380.1143 Q9H9Y2;X6R7Q1 Q9H9Y2 20 44 RPF1 Ribosome production factor 1 yes no 2 2.2676E-57 183.73 4 2 0.66393 0.91734 47.894 4 Median 1.0557 1.3776 31.93 2 0 Median 0.4497 0.65978 21.038 2 0 Median 21913000 12517000 9395600 8483200 3544600 4938500 13429000 8972400 4457100 7 1747 7 27;28;29;30;31;32 42;43;44;45;46;47;48;49 42 8 AAAEQAISVR AEQTAAREQAKEACKAAAEQAISVRQQVVL KEACKAAAEQAISVRQQVVLENAAKKRERA K A A V R Q 4 1 0 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 10 0 1014.5458 Q01780 Q01780 759 768 EXOSC10 Exosome component 10 yes yes 2 0.00050205 122.33 4 2 0.48949 0.65773 47.313 4 Median 0.73194 1.006 15.297 2 0 Median 0.34764 0.45168 8.3526 2 0 Median 32194000 22288000 9905700 24589000 17277000 7311800 7605300 5011400 2593900 8 1433 8 33;34;35;36;37;38 50;51;52;53;54;55 50 6 AAAFPPGFSISEIK GAGDGATENGVQPPKAAAFPPGFSISEIKN KAAAFPPGFSISEIKNKQRRHLMFTRWKQQ K A A I K N 3 0 0 0 0 0 1 1 0 2 0 1 0 2 2 2 0 0 0 0 0 0 14 0 1433.7555 Q9H9Y2;X6R7Q1 Q9H9Y2 45 58 RPF1 Ribosome production factor 1 yes no 2 0.0069084 48.44 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7719300 0 7719300 7719300 0 7719300 0 0 0 9 1747 9 39 56 56 1 AAAGYPDPYSR LVGRELSEQLGQAERAAAGYPDPYSRASLS QAERAAAGYPDPYSRASLSLWQAMEKGLVP R A A S R A 3 1 0 1 0 0 0 1 0 0 0 0 0 0 2 1 0 0 2 0 0 0 11 0 1166.5356 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 1323 1333 EPPK1 Epiplakin no no 2 0.0037176 70.816 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3627400 3627400 0 3627400 3627400 0 0 0 0 10 373;1386 10 40 57 57 1 AAAHCAHVFTTVSQITAIEAQHLLK EAGERQIYHRYCMERAAAHCAHVFTTVSQI TVSQITAIEAQHLLKRKPDIVTPNGLNVKK R A A L K R 6 0 0 0 1 2 1 0 3 2 2 1 0 1 0 1 3 0 0 2 0 0 25 0 2716.4119 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6;B7Z8P0 P13807 247 271 GYS1 Glycogen [starch] synthase, muscle yes no 4 6.2022E-16 83.245 1 2 0.56877 0.71823 NaN 1 Median 0.56877 0.71823 NaN 1 0 Median NaN NaN NaN 0 0 Median 28838000 26670000 2167600 5744000 3576500 2167600 23094000 23094000 0 11 1265 11 41;42;43 58;59;60 60 3 AAAIGIDLGTTYSCVGVFQHGK ______________________________ LGTTYSCVGVFQHGKVEIIANDQGNRTTPS K A A G K V 3 0 0 1 1 1 0 4 1 2 1 1 0 1 0 1 2 0 1 2 0 0 22 0 2264.126 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DI39;B4DWK5;B4DFN9;B4DVU9;B4E1S9;B4E388;V9GZ37;B3KTT5;B4DNV4;B4E1T6;B4DNX1 A8K5I0 4 25 HEL-S-103;HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 3 1.5435E-29 152.89 4 0.70244 0.8772 4.6788 3 Median 0.70244 0.8772 4.6788 3 0 Median NaN NaN NaN 0 0 Median 95925000 55748000 40178000 95925000 55748000 40178000 0 0 0 12 439 12 44;45;46;47 61;62;63;64 62 4 AAAIQLQAAFR YLKGKIERTNYLQKRAAAIQLQAAFRRLKA LQKRAAAIQLQAAFRRLKAHNLCRQIRAAC R A A F R R 5 1 0 0 0 2 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 11 0 1158.6509 Q8IZT6 Q8IZT6 1539 1549 ASPM Abnormal spindle-like microcephaly-associated protein yes yes 2 0.019067 73.26 1 1.4262 2.0174 NaN 1 Median 1.4262 2.0174 NaN 1 0 Median NaN NaN NaN 0 0 Median 2371700 1072900 1298800 2371700 1072900 1298800 0 0 0 13 1631 13 48 65 65 1 AAALDVYNAVSTSFQR MSGLPDLLKRQIAKKAAALDVYNAVSTSFQ AALDVYNAVSTSFQRVVHVQQKDDGCCLWH K A A Q R V 4 1 1 1 0 1 0 0 0 0 1 0 0 1 0 2 1 0 1 2 0 0 16 0 1711.8529 Q96QE3;H0UIC2;A0A075B754 Q96QE3 854 869 ATAD5 ATPase family AAA domain-containing protein 5 yes no 2 0.00069529 94.402 2 1.3815 1.9263 40.091 2 Median 1.3815 1.9263 40.091 2 0 Median NaN NaN NaN 0 0 Median 6391400 2210500 4180900 6391400 2210500 4180900 0 0 0 14 1698 14 49;50 66;67 66 1 AAAQCYIDLIIK AGTLVTLSSAPTAIKAAAQCYIDLIIKESD AIKAAAQCYIDLIIKESDNNVKLIVLDRLI K A A I K E 3 0 0 1 1 1 0 0 0 3 1 1 0 0 0 0 0 0 1 0 0 0 12 0 1377.7326 P53618;E9PP73 P53618 280 291 COPB1 Coatomer subunit beta yes no 2 0.0096472 79.07 1 0.52369 0.68118 NaN 1 Median 0.52369 0.68118 NaN 1 0 Median NaN NaN NaN 0 0 Median 1808900 1198200 610670 1808900 1198200 610670 0 0 0 15 1370 15 51 68 68 1 AAASHLFPFEK QKLKGGPKKTKREKKAAASHLFPFEKL___ REKKAAASHLFPFEKL______________ K A A E K L 3 0 0 0 0 0 1 0 1 0 1 1 0 2 1 1 0 0 0 0 0 0 11 0 1216.6241 A0A024R2M8 A0A024R2M8 929 939 XPC yes yes 3 0.020997 60.641 2 0.72262 0.9094 5.0795 2 Median 0.72262 0.9094 5.0795 2 0 Median NaN NaN NaN 0 0 Median 23997000 13628000 10368000 23997000 13628000 10368000 0 0 0 16 89 16 52;53 69;70 69 2 AAAYNLVQHGITNLCVIGGDGSLTGANIFR GSARCKAFTTREGRRAAAYNLVQHGITNLC VIGGDGSLTGANIFRSEWGSLLEELVAEGK R A A F R S 4 1 3 1 1 1 0 5 1 3 3 0 0 1 0 1 2 0 1 2 0 0 30 0 3101.5717 P17858;B4E108 P17858 100 129 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 3 8.7821E-08 76.31 4 0.42024 0.57206 18.096 4 Median 0.42024 0.57206 18.096 4 0 Median NaN NaN NaN 0 0 Median 19604000 13685000 5918500 19604000 13685000 5918500 0 0 0 17 1279 17 54;55;56;57 71;72;73;74;75;76;77 73 7 AAAYSAQVQPVDGATR AQMEAEWREALRALRAAAYSAQVQPVDGAT AAYSAQVQPVDGATRKKSQRVCRPRSIWRA R A A T R K 5 1 0 1 0 2 0 1 0 0 0 0 0 0 1 1 1 0 1 2 0 0 16 0 1603.7954 Q9H7E9 Q9H7E9 183 198 C8orf33 UPF0488 protein C8orf33 yes yes 2 2.0247E-25 187.78 4 2 0.68568 0.925 7.9407 6 Median 0.65662 0.88948 8.93 4 0 Median 0.69713 0.98392 3.8354 2 0 Median 37362000 22120000 15242000 25200000 15200000 10000000 12161000 6919900 5241500 18 1741 18 58;59;60;61;62;63 78;79;80;81;82;83;84;85;86;87 78 10 AACIAEQYHTVLK LQNNMVLVKLDLRKKAACIAEQYHTVLKLQ KKAACIAEQYHTVLKLQGQVSAKKRLGTNQ K A A L K L 3 0 0 0 1 1 1 0 1 1 1 1 0 0 0 0 1 0 1 1 0 0 13 0 1502.7551 O95235 O95235 807 819 KIF20A Kinesin-like protein KIF20A yes yes 2;3 5.4507E-16 163.46 6 1 0.84111 1.0598 51.805 4 Median 0.86641 1.0978 17.876 3 0 Median 0.28623 0.43392 NaN 1 0 Median 88315000 27988000 60327000 78832000 20636000 58197000 9482400 7352300 2130100 19 1215 19 64;65;66;67;68;69;70 88;89;90;91;92;93;94;95;96 90 9 AACNLLQR SARCQAFRTREGRLKAACNLLQRGITNLCV TREGRLKAACNLLQRGITNLCVIGGDGSLT K A A Q R G 2 1 1 0 1 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 944.48618 Q01813;V9GYV7;Q5VSR5 Q01813 110 117 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2 0.0057457 114.72 2 0.89143 1.179 NaN 1 Median 0.89143 1.179 NaN 1 0 Median NaN NaN NaN 0 0 Median 15424000 9067600 6356200 15424000 9067600 6356200 0 0 0 20 1434 20 71;72 97;98;99 97 3 AACQCVEPIK WLHPTLKQDILEEIKAACQCVEPIKSAVCI LEEIKAACQCVEPIKSAVCIADPLPTPSQE K A A I K S 2 0 0 0 2 1 1 0 0 1 0 1 0 0 1 0 0 0 0 1 0 0 10 0 1174.5475 Q96F88;Q99575 Q96F88 345 354 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 0.0011972 117.89 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 21 1685 21 73 100 100 1 AADFQLHTHVNDGTEFGGSIYQK AKSKLSQNNFALGYKAADFQLHTHVNDGTE HVNDGTEFGGSIYQKVNEKIETSINLAWTA K A A Q K V 2 0 1 2 0 2 1 3 2 1 1 1 0 2 0 1 2 0 1 1 0 0 23 0 2534.1826 Q9Y277 Q9Y277 175 197 VDAC3 Voltage-dependent anion-selective channel protein 3 yes yes 3;4 2.2331E-12 109.83 4 0.64519 0.8191 6.6902 4 Median 0.64519 0.8191 6.6902 4 0 Median NaN NaN NaN 0 0 Median 46984000 28152000 18832000 46984000 28152000 18832000 0 0 0 22 1803 22 74;75;76;77 101;102;103;104;105;106;107 107 7 AADISLDNLVEGK QYGLGPYEAVTPLTKAADISLDNLVEGKRK TKAADISLDNLVEGKRKRRSNVSSPATPTA K A A G K R 2 0 1 2 0 0 1 1 0 1 2 1 0 0 0 1 0 0 0 1 0 0 13 0 1343.6933 A6NNK5;Q12888;B7Z3E7;B3KVT9;H7BZY0 A6NNK5 1569 1581 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 2 0.0019593 66.056 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 23 572 23 78 108 108 1 AADPVPSFDESSQDTSEK KMKVAPLFLVRKAQKAADPVPSFDESSQDT PVPSFDESSQDTSEKSQDCDVQCKAKRDFL K A A E K S 2 0 0 3 0 1 2 0 0 0 0 1 0 1 2 4 1 0 0 1 0 0 18 0 1908.8225 Q96QE3;H0UIC2;A0A075B754 Q96QE3 806 823 ATAD5 ATPase family AAA domain-containing protein 5 yes no 2 4.6587E-05 115.83 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2636500 0 2636500 2636500 0 2636500 0 0 0 24 1698 24 79;80 109;110 110 2 AADRLEQELLR QKRRLDKVRRKKEEKAADRLEQELLRDTVK KEEKAADRLEQELLRDTVKFGEVVLQPPEL K A A L R D 2 2 0 1 0 1 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 11 1 1312.7099 I3L0U5;H6QX63;Q6PK04 I3L0U5 192 202 CCDC137 Coiled-coil domain-containing protein 137 yes no 3 3.5455E-06 103.44 3 1 0.96526 1.2875 34.633 4 Median 1.0316 1.3642 31.151 3 0 Median 0.633 0.96017 NaN 1 0 Median 55931000 27990000 27941000 40712000 19500000 21212000 15219000 8490200 6729000 25 1112 25 81;82;83;84 111;112;113;114;115 113 5 AADSICDGDLVDSQIR AAGGDMKKHLMLLSRAADSICDGDLVDSQI ADSICDGDLVDSQIRSKQNWSLLPAQAIYA R A A I R S 2 1 0 4 1 1 0 1 0 2 1 0 0 0 0 2 0 0 0 1 0 0 16 0 1733.789 P35251 P35251 911 926 RFC1 Replication factor C subunit 1 yes yes 2 3.6649E-10 133.32 4 0.62305 0.84115 16.344 3 Median 0.62305 0.84115 16.344 3 0 Median NaN NaN NaN 0 0 Median 12139000 8180900 3958000 12139000 8180900 3958000 0 0 0 26 1318 26 85;86;87;88 116;117;118;119;120;121 117 6 AADSLQQNLQR PASTIARPNMALGKKAADSLQQNLQRDYDR LGKKAADSLQQNLQRDYDRAMSWKYSRGAG K A A Q R D 2 1 1 1 0 3 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 11 0 1242.6317 Q1ED39;H3BNU8 Q1ED39 408 418 KNOP1 Lysine-rich nucleolar protein 1 yes no 2 0.0014172 106.6 1 2 0.92413 1.3919 7.9751 2 Median NaN NaN NaN 0 0 Median 0.92413 1.3919 7.9751 2 0 Median 35398000 16172000 19226000 2427200 0 2427200 32971000 16172000 16799000 27 1525 27 89;90;91 122;123;124 123 2 AAEAADLGLGAAVPVELR ______________________________ AADLGLGAAVPVELRRERRMVCVEYPGVVR M A A L R R 6 1 0 1 0 0 2 2 0 0 3 0 0 0 1 0 0 0 0 2 0 0 18 0 1721.9312 Q5T7U1;Q9Y5Q8 Q5T7U1 2 19 GTF3C5 General transcription factor 3C polypeptide 5 yes no 2 5.3767E-06 91.712 2 0.57721 0.781 NaN 1 Median 0.57721 0.781 NaN 1 0 Median NaN NaN NaN 0 0 Median 2512900 1909200 603700 2512900 1909200 603700 0 0 0 28 1572 28 92;93 125;126 125 1 AAEAADLGLGAAVPVELRR ______________________________ ADLGLGAAVPVELRRERRMVCVEYPGVVRD M A A R R E 6 2 0 1 0 0 2 2 0 0 3 0 0 0 1 0 0 0 0 2 0 0 19 1 1878.0323 Q5T7U1;Q9Y5Q8 Q5T7U1 2 20 GTF3C5 General transcription factor 3C polypeptide 5 yes no 2 0.00028816 89.44 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2043400 2043400 0 2043400 2043400 0 0 0 0 29 1572 29 94;95 127;128 128 2 AAEAFLR ETSGALKWKEDLSRKAAEAFLRQQQAAPNL WKEDLSRKAAEAFLRQQQAAPNLRKLIYGT K A A L R Q 3 1 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 776.41809 Q14692 Q14692 675 681 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.0042222 149.06 4 2 0.89585 1.2074 25.567 5 Median 0.97602 1.3023 22.639 3 0 Median 0.73083 1.029 17.605 2 0 Median 76991000 42945000 34046000 55992000 31577000 24415000 20999000 11369000 9630700 30 1495 30 96;97;98;99;100;101 129;130;131;132;133;134;135;136;137;138 133 10 AAECNIVVTQPR QVPQFILDDFIQNDRAAECNIVVTQPRRIS NDRAAECNIVVTQPRRISAVSVAERVAFER R A A P R R 2 1 1 0 1 1 1 0 0 1 0 0 0 0 1 0 1 0 0 2 0 0 12 0 1356.682 Q08211;Q58F26;Q6PJK6 Q08211 435 446 DHX9 ATP-dependent RNA helicase A yes no 2 1.2295E-15 167.12 4 2 0.66009 0.90901 10.659 6 Median 0.68038 0.93677 2.9559 4 0 Median 0.47574 0.76116 3.23 2 0 Median 568150000 338530000 229620000 483200000 281300000 201900000 84950000 57231000 27718000 31 1448 31 102;103;104;105;106;107 139;140;141;142;143;144;145;146;147;148;149;150;151;152;153 142 15 AAEFGEPTSEQTGTAAGK KVEVENVMKRKFSLRAAEFGEPTSEQTGTA FGEPTSEQTGTAAGKTIAQTTAPVSWKPQD R A A G K T 4 0 0 0 0 1 3 3 0 0 0 1 0 1 1 1 3 0 0 0 0 0 18 0 1750.801 O95425 O95425 1055 1072 SVIL Supervillin yes yes 2 1.3984E-50 199.13 5 1.1663 1.5025 9.76 3 Plateau 1.1663 1.5025 9.76 3 0 Plateau NaN NaN NaN 0 0 Median 15808000 6648600 9159800 15808000 6648600 9159800 0 0 0 32 1220 32 108;109;110;111;112 154;155;156;157;158;159;160;161 156 8 AAEISAMLK EIPKYITASTFAQARAAEISAMLKAVTQKS TFAQARAAEISAMLKAVTQKSSNSLVFQTL R A A L K A 3 0 0 0 0 0 1 0 0 1 1 1 1 0 0 1 0 0 0 0 0 0 9 0 932.5001 Q96F88;Q99575;E5RK39 Q96F88 112 120 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 0.012099 51.059 1 0.40292 0.55722 NaN 1 Median NaN NaN NaN 0 0 Median 0.40292 0.55722 NaN 1 0 Median 3708400 2780200 928190 0 0 0 3708400 2780200 928190 33 1685 33 113 162 162 760 1 AAELETDIR QAVRHLPQSVRIYIRAAELETDIRAKKRVL VRIYIRAAELETDIRAKKRVLRKALEHVPN R A A I R A 2 1 0 1 0 0 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 9 0 1016.5138 O94906 O94906 379 387 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.023874 49.715 1 0.4747 0.6325 NaN 1 Median 0.4747 0.6325 NaN 1 0 Median NaN NaN NaN 0 0 Median 7154100 4473400 2680700 7154100 4473400 2680700 0 0 0 34 1212 34 114 163 163 1 AAELIANSLATAGDGLIELR QQKKAAIISAEGDSKAAELIANSLATAGDG ANSLATAGDGLIELRKLEAAEDIAYQLSRS K A A L R K 5 1 1 1 0 0 2 2 0 2 4 0 0 0 0 1 1 0 0 0 0 0 20 0 1997.0793 Q6PUJ7;A8K401;P35232;Q6FHP5;C9JW96 Q6PUJ7 220 239 HEL-S-54e;PHB Prohibitin yes no 2 3.3793E-249 325.77 6 1 0.59266 0.80747 44.97 6 Median 0.56493 0.78424 7.1144 5 0 Median 1.4887 2.3727 NaN 1 0 Median 763940000 471640000 292300000 710730000 449640000 261080000 53211000 21992000 31218000 35 600 35 115;116;117;118;119;120;121 164;165;166;167;168;169;170;171;172;173 165 9 AAELIANSLATAGDGLIELRK QQKKAAIISAEGDSKAAELIANSLATAGDG NSLATAGDGLIELRKLEAAEDIAYQLSRSR K A A R K L 5 1 1 1 0 0 2 2 0 2 4 1 0 0 0 1 1 0 0 0 0 0 21 1 2125.1743 Q6PUJ7;A8K401;P35232;Q6FHP5;C9JW96 Q6PUJ7 220 240 HEL-S-54e;PHB Prohibitin yes no 2;3 3.3328E-23 130.06 5 2 0.54071 0.71586 39.307 5 Median 0.54071 0.71586 39.307 5 0 Median NaN NaN NaN 0 0 Median 64822000 35523000 29299000 58147000 35523000 22623000 6675700 0 6675700 36 600 36 122;123;124;125;126;127;128 174;175;176;177;178;179;180;181;182 180 9 AAESLADPTEYENLFPGLK VVKLWRENLSKVNQKAAESLADPTEYENLF LADPTEYENLFPGLKEAFVVEEWVKETHAD K A A L K E 3 0 1 1 0 0 3 1 0 0 3 1 0 1 2 1 1 0 1 0 0 0 19 0 2064.0052 P35606 P35606 784 802 COPB2 Coatomer subunit beta yes yes 2 8.7186E-13 87.001 1 0.64142 0.82147 NaN 1 Median 0.64142 0.82147 NaN 1 0 Median NaN NaN NaN 0 0 Median 4353000 2854800 1498100 4353000 2854800 1498100 0 0 0 37 1321 37 129 183 183 1 AAESLTAIPEPASPQLLETPIHASQIQK PKSQASRNQRWGAVRAAESLTAIPEPASPQ PQLLETPIHASQIQKVEPAGRSRFTPELQP R A A Q K V 5 0 0 0 0 3 3 0 1 3 3 1 0 0 4 3 2 0 0 0 0 0 28 0 2939.5604 Q14676;B4DYH4 Q14676 1763 1790 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 3 0.029797 44.304 2 0.64763 0.82017 NaN 1 Median 0.64763 0.82017 NaN 1 0 Median NaN NaN NaN 0 0 Median 8873100 6638900 2234200 8873100 6638900 2234200 0 0 0 38 1491 38 130;131 184;185 184 2 AAESSSDSSDSDSSEDDEAPSKPAGTTK AVVSKATTKPPPAKKAAESSSDSSDSDSSE SEDDEAPSKPAGTTKNSSNKPAVTTKSPAV K A A T K N 4 0 0 5 0 0 3 1 0 0 0 2 0 0 2 9 2 0 0 0 0 0 28 1 2757.122 B2RAU8;A0A0A0MRM9;Q14978;Q96J17 B2RAU8 358 385 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 3 1.6931E-12 82.381 2 2 0.30138 0.45251 0.41205 2 Median NaN NaN NaN 0 0 Median 0.30138 0.45251 0.41205 2 0 Median 10612000 8528400 2083100 1106900 1106900 0 9504700 7421600 2083100 39 388 39 132;133;134;135 186;187;188;189 189 4 AAFAHFPELYDFALSNVAEVDTR EMTTIHYDRITSLQRAAFAHFPELYDFALS LYDFALSNVAEVDTRESLVKFFGPLSSNTL R A A T R E 5 1 1 2 0 0 2 0 1 0 2 0 0 3 1 1 1 0 1 2 0 0 23 0 2582.2442 B0AZM4;A8K6F0;A0A024R9L1;O60306;H0YH15 B0AZM4 340 362 AQR Intron-binding protein aquarius yes no 3 0.0079285 42.813 1 0.62298 0.89798 NaN 1 Median 0.62298 0.89798 NaN 1 0 Median NaN NaN NaN 0 0 Median 2611900 1831400 780520 2611900 1831400 780520 0 0 0 40 226 40 136 190 190 1 AAFQLR SGQWPQDAEAVQRVRAAFQLRLAELLTQQH DAEAVQRVRAAFQLRLAELLTQQHGLQCRA R A A L R L 2 1 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 6 0 704.39696 Q9H6R4;A0A0A0MRW6;B4DF80;B3KPN5 Q9H6R4 759 764 NOL6 Nucleolar protein 6 yes no 2 0.034682 106.05 2 2 0.96385 1.507 16.319 4 Median 0.96361 1.2978 23.336 2 0 Median 0.96385 1.5174 3.1655 2 0 Median 101240000 50285000 50955000 37091000 18378000 18713000 64149000 31907000 32242000 41 1738 41 137;138;139;140 191;192;193;194 194 4 AAFQSLLDAQADEAVLDHPDLK DPRSFDSNAFTLLLRAAFQSLLDAQADEAV DAQADEAVLDHPDLKHIDPVVLKHCHAAAA R A A L K H 5 0 0 4 0 2 1 0 1 0 4 1 0 1 1 1 0 0 0 1 0 0 22 0 2366.1754 R4GMX3;R4GN54;B3KY73;R4GMW6;H0Y4W0;H0Y6Z9;Q9UBI1 R4GMX3 31 52 COMMD3-BMI1;COMMD3 COMM domain-containing protein 3 yes no 3 0.00016153 64.538 1 0.41503 0.52165 NaN 1 Median 0.41503 0.52165 NaN 1 0 Median NaN NaN NaN 0 0 Median 4410900 2663500 1747400 4410900 2663500 1747400 0 0 0 42 1835 42 141 195 195 1 AAFTVSLDPGPLEQFPHSMEPQLR FTKYTEMDYARAGNKAAFTVSLDPGPLEQF GPLEQFPHSMEPQLRQLGLPTALKRGVVTL K A A L R Q 2 1 0 1 0 2 2 1 1 0 3 0 1 2 4 2 1 0 0 1 0 0 24 0 2666.3163 A0A024RAE1;Q9UKD2 A0A024RAE1 131 154 C1orf33;MRTO4 mRNA turnover protein 4 homolog yes no 3 0.0072144 32.702 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3670000 3670000 0 3670000 3670000 0 0 0 0 43 240 43 142 196 196 1 AAGGFTHDELLK AVRKLRKYIVARTQRAAGGFTHDELLKVWK TQRAAGGFTHDELLKVWKGLFYCMWMQDKP R A A L K V 2 0 0 1 0 0 1 2 1 0 2 1 0 1 0 0 1 0 0 0 0 0 12 0 1257.6354 Q6PJJ2;P56182;B4DZM3;Q53FR7 Q6PJJ2 48 59 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 2;3 7.0589E-05 112.83 5 0.78775 1.0013 22.832 4 Median 0.78775 1.0013 22.832 4 0 Median NaN NaN NaN 0 0 Median 71124000 33976000 37148000 71124000 33976000 37148000 0 0 0 44 1381 44 143;144;145;146;147 197;198;199;200;201;202 200 6 AAGSPSSSDQDEKLPGQDESTAGTSEQNDILK SLRPPNVACWRDGGKAAGSPSSSDQDEKLP DESTAGTSEQNDILKVVEKRIACGPPQAKL K A A L K V 3 0 1 4 0 3 3 3 0 1 2 2 0 0 2 6 2 0 0 0 0 0 32 1 3261.4757 E7EPN9;Q9Y520 E7EPN9 186 217 PRRC2C Protein PRRC2C yes no 3 8.9925E-05 58.342 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1031700 0 1031700 1031700 0 1031700 0 0 0 45 1010 45 148 203 203 1 AAGTAAALAFLSQESR ______________________________ AGTAAALAFLSQESRTRAGGVGGLRVPAPV M A A S R T 6 1 0 0 0 1 1 1 0 0 2 0 0 1 0 2 1 0 0 0 0 0 16 0 1562.8053 O75607 O75607 2 17 NPM3 Nucleoplasmin-3 yes yes 2 3.2636E-13 142.91 4 0.77197 1.0631 25.04 3 Plateau 0.77197 1.0631 25.04 3 0 Plateau NaN NaN NaN 0 0 Median 8138000 2733400 5404600 8138000 2733400 5404600 0 0 0 46 1205 46 149;150;151;152 204;205;206;207;208 205 5 AAGVEAAAEVAATEIK ______________________________ AGVEAAAEVAATEIKMEEESGAPGVPSGNG M A A I K M 7 0 0 0 0 0 3 1 0 1 0 1 0 0 0 0 1 0 0 2 0 0 16 0 1499.7831 P52272;A0A087X0X3;M0R019;B4DEG4;M0R2T0;M0R0N3;M0QYQ7;M0R0Y6 P52272 2 17 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 5.6761E-60 222.79 4 0.32787 0.41039 12.011 4 Median 0.32787 0.41039 12.011 4 0 Median NaN NaN NaN 0 0 Median 60985000 44907000 16079000 60985000 44907000 16079000 0 0 0 47 1363 47 153;154;155;156 209;210;211;212;213;214;215;216;217 210 9 AAGYNFYGTER SEENSALEYFGEMLKAAGYNFYGTERLYSG EMLKAAGYNFYGTERLYSGISGLELEADIF K A A E R L 2 1 1 0 0 0 1 2 0 0 0 0 0 1 0 0 1 0 2 0 0 0 11 0 1247.5571 Q6DKI9;Q9BSR4;Q4QRK8;B7Z1W6;Q9H9Y6;Q9H6S8 Q6DKI9 393 403 POLR1B DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA2 yes no 2 0.047464 45.161 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 48 904 48 157 218 218 1 AAHGGSAASSALK ______________________________ ______________________________ M A A L K G 5 0 0 0 0 0 0 2 1 0 1 1 0 0 0 3 0 0 0 0 0 0 13 0 1126.5731 F8WB69;O94888 F8WB69 2 14 UBXN7 UBX domain-containing protein 7 yes no 2 0.0023761 51.445 1 0.66614 0.83509 NaN 1 Median 0.66614 0.83509 NaN 1 0 Median NaN NaN NaN 0 0 Median 2170500 1278800 891670 2170500 1278800 891670 0 0 0 49 1073 49 158 219 219 1 AAHIFNEALVCHQIR KNPNYIRCIKPNDKKAAHIFNEALVCHQIR AAHIFNEALVCHQIRYLGLLENVRVRRAGY K A A I R Y 3 1 1 0 1 1 1 0 2 2 1 0 0 1 0 0 0 0 0 1 0 0 15 0 1777.9046 E9PDF6;B0I1S9;O43795 E9PDF6 603 617 MYO1B Unconventional myosin-Ib yes no 4 0.00056394 44.457 1 0.88622 1.166 NaN 1 Median 0.88622 1.166 NaN 1 0 Median NaN NaN NaN 0 0 Median 8496600 3576700 4919900 8496600 3576700 4919900 0 0 0 50 665 50 159 220 220 1 AAIEEIK EYLTGFHKRKVERKKAAIEEIKQRLKEEQR KRKVERKKAAIEEIKQRLKEEQRKLREERH K A A I K Q 2 0 0 0 0 0 2 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 7 0 772.43307 B4DGP7;V9GYY5;B3KQ09;A0A024R1M6;Q9UGY1 B4DGP7 44 50 MGC3731;NOL12 Nucleolar protein 12 yes no 2 0.030956 62.717 1 1 0.89182 1.2092 20.516 2 Median 1.1009 1.398 NaN 1 0 Median 0.72248 1.0459 NaN 1 0 Median 19645000 9309400 10336000 13100000 5710800 7389100 6545400 3598700 2946700 51 60 51 160;161 221;222;223 221 3 AAIGLLAR FRDISPVLKDPASFRAAIGLLARHLKATHG KDPASFRAAIGLLARHLKATHGGRIDYIAG R A A A R H 3 1 0 0 0 0 0 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 8 0 783.49667 H3BQZ9;P07741;H3BQB1;H3BSW3;H3BQF1 H3BQZ9 41 48 APRT Adenine phosphoribosyltransferase yes no 2 0.00049454 94.163 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19773000 8324000 11449000 8324000 8324000 0 11449000 0 11449000 52 1106 52 162;163;164 224;225;226 224 3 AAIISAEGDSK ERARFVVEKAEQQKKAAIISAEGDSKAAEL QQKKAAIISAEGDSKAAELIANSLATAGDG K A A S K A 3 0 0 1 0 0 1 1 0 2 0 1 0 0 0 2 0 0 0 0 0 0 11 0 1060.5401 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0;C9JW96 Q6PUJ7 209 219 HEL-S-54e;PHB Prohibitin yes no 2 6.8793E-07 148.94 1 1 1.1128 1.608 74.669 2 Median 0.72795 0.94837 NaN 1 0 Median 1.7011 2.7264 NaN 1 0 Median 109140000 58662000 50473000 77411000 46749000 30662000 31725000 11913000 19811000 53 600 53 165;166 227;228;229 227 3 AAILPTSIFLTNK PSNHVIDRWLGEPIKAAILPTSIFLTNKKG IKAAILPTSIFLTNKKGFPVLSKMHQRLIF K A A N K K 2 0 1 0 0 0 0 0 0 2 2 1 0 1 1 1 2 0 0 0 0 0 13 0 1387.8075 B4DV00;B2RDD7;O14744;H0YJX6 B4DV00 122 134 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 2 0.0020468 91.937 1 2.1108 2.6619 NaN 1 Median 2.1108 2.6619 NaN 1 0 Median NaN NaN NaN 0 0 Median 3491900 1418300 2073500 3491900 1418300 2073500 0 0 0 54 734 54 167 230 230 1 AAITTLK SLLSGEGNVTFNGHKAAITTLKYDQLGGRL NVTFNGHKAAITTLKYDQLGGRLASGSKDT K A A L K Y 2 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 2 0 0 0 0 0 7 0 716.44324 Q5TDG3;Q9UNX4 Q5TDG3 108 114 WDR3 WD repeat-containing protein 3 yes no 2 0.047531 51.787 1 0.65228 0.99085 NaN 1 Median NaN NaN NaN 0 0 Median 0.65228 0.99085 NaN 1 0 Median 10574000 5971000 4602800 0 0 0 10574000 5971000 4602800 55 1576 55 168 231 231 1 AALAHSEEVTASQVAATK QRLREQLQLLEEQHRAALAHSEEVTASQVA AHSEEVTASQVAATKTLPNGRDALDGPAAE R A A T K T 6 0 0 0 0 1 2 0 1 0 1 1 0 0 0 2 2 0 0 2 0 0 18 0 1782.9112 Q15149;D3DWL0;H0YDN1 Q15149 2744 2761 PLEC;PLEC1 Plectin yes no 2;3 9.5866E-31 181.71 7 0.87549 1.0975 19.151 6 Median 0.87549 1.0975 19.151 6 0 Median NaN NaN NaN 0 0 Median 130070000 69524000 60549000 130070000 69524000 60549000 0 0 0 56 1507 56 169;170;171;172;173;174;175 232;233;234;235;236;237;238;239;240;241;242;243;244 236 13 AALEALLPYTER RREAPEELLAYEGVRAALEALLPYTERHFQ GVRAALEALLPYTERHFQRLSRTLQAAAFL R A A E R H 3 1 0 0 0 0 2 0 0 0 3 0 0 0 1 0 1 0 1 0 0 0 12 0 1345.7242 Q12788;J3KNP2;A0JLS5 Q12788 755 766 TBL3 Transducin beta-like protein 3 yes no 2 4.4551E-10 133.99 4 2 0.8706 1.2201 3.0395 6 Median 0.89648 1.22 3.7937 4 0 Median 0.75026 1.2201 1.7228 2 0 Median 304850000 169540000 135310000 154410000 82540000 71869000 150440000 87002000 63438000 57 1456 57 176;177;178;179;180;181 245;246;247;248;249;250;251;252;253 253 9 AALEEFSR LASVVDPRVASAAAKAALEEFSRVREEVPL VASAAAKAALEEFSRVREEVPLELVEAHVK K A A S R V 2 1 0 0 0 0 2 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 8 0 921.4556 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q05BW5;B4DYF9 Q58EY4 717 724 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 2 0.0050659 92.47 1 1.173 1.6904 NaN 1 Median NaN NaN NaN 0 0 Median 1.173 1.6904 NaN 1 0 Median 8698800 3810600 4888200 0 0 0 8698800 3810600 4888200 58 1549 58 182 254;255 255 2 AALEEVER QKSLAAEEEAARQRKAALEEVERLKAKVEE EAARQRKAALEEVERLKAKVEEARRLRERA K A A E R L 2 1 0 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 8 0 915.46616 Q15149 Q15149 2143 2150 PLEC Plectin yes yes 2 0.004223 104.37 3 0.8895 1.2061 1.6798 2 Median 0.8895 1.2061 1.6798 2 0 Median NaN NaN NaN 0 0 Median 19832000 9225400 10607000 19832000 9225400 10607000 0 0 0 59 1507 59 183;184;185 256;257;258;259 259 4 AALEEVYPDLTPEETRR QGVALLPFVDERRLRAALEEVYPDLTPEET LEEVYPDLTPEETRRNSLGGDVLFVGKHHP R A A R R N 2 2 0 1 0 0 4 0 0 0 2 0 0 0 2 0 2 0 1 1 0 0 17 1 1987.9851 B4E0B9;B4DZC3;B3KMC9;Q9H0D6 B4E0B9 584 600 XRN2 5-3 exoribonuclease 2 yes no 3 0.00018085 45.723 3 0.92617 1.2125 26.285 3 Plateau 0.92617 1.2125 26.285 3 0 Plateau NaN NaN NaN 0 0 Median 23581000 13115000 10466000 23581000 13115000 10466000 0 0 0 60 754 60 186;187;188 260;261;262;263;264 263 5 AALETDENLLLCAPTGAGK EGFKTLNRIQSKLYRAALETDENLLLCAPT TDENLLLCAPTGAGKTNVALMCMLREIGKH R A A G K T 4 0 1 1 1 0 2 2 0 0 4 1 0 0 1 0 2 0 0 0 0 0 19 0 1942.967 O75643;A4FU77 O75643 491 509 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 1.1801E-50 196.18 4 1 0.63195 0.79958 28.933 5 Median 0.6172 0.77814 6.6762 4 0 Median 0.97849 1.4855 NaN 1 0 Median 69899000 41137000 28762000 59738000 36519000 23220000 10161000 4618100 5542500 61 1206 61 189;190;191;192;193 265;266;267;268;269;270;271;272;273;274;275 269 11 AALGHLAGEAAAAPGPGTPCASR ______________________________ EAAAAPGPGTPCASRGARLPGPVSSARNPS M A A S R G 8 1 0 0 1 0 1 4 1 0 2 0 0 0 3 1 1 0 0 0 0 0 23 0 2102.0327 Q9H7E9 Q9H7E9 2 24 C8orf33 UPF0488 protein C8orf33 yes yes 2 1.528E-40 178.85 3 0.62861 0.86943 7.523 2 Median 0.62861 0.86943 7.523 2 0 Median NaN NaN NaN 0 0 Median 9378900 5572100 3806800 9378900 5572100 3806800 0 0 0 62 1741 62 194;195;196 276;277;278;279;280;281 277 6 AALGPLVTGLYDVQAFK ______________________________ LGPLVTGLYDVQAFKFGDFVLKSGLSSPIY R A A F K F 3 0 0 1 0 1 0 2 0 0 3 1 0 1 1 0 1 0 1 2 0 0 17 0 1761.9665 B5LY71;A8K5J1;P11172;E9PFD2;B5LY67;B5LY69;F2Z3P2;F2Z303;F8WDG4 B5LY71 6 22 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase yes no 2 1.4598E-13 143.42 4 0.28539 0.36431 16.221 4 Median 0.28539 0.36431 16.221 4 0 Median NaN NaN NaN 0 0 Median 29057000 22893000 6163900 29057000 22893000 6163900 0 0 0 63 617 63 197;198;199;200 282;283;284;285;286;287 284 6 AALHDPGFPSYCQSLK DSLGEVQDLLVRLLKAALHDPGFPSYCQSL ALHDPGFPSYCQSLKILGEKVSEIPLTRDN K A A L K I 2 0 0 1 1 1 0 1 1 0 2 1 0 1 2 2 0 0 1 0 0 0 16 0 1789.8458 J3QK86;J3KPG5;F8VU39;Q9UIF9 J3QK86 874 889 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 3 0.0018266 31.876 1 0.8338 1.0561 NaN 1 Median 0.8338 1.0561 NaN 1 0 Median NaN NaN NaN 0 0 Median 13750000 7378700 6371400 13750000 7378700 6371400 0 0 0 64 1062 64 201 288;289 289 2 AALLNQHYQVNFK FPPEASGYLHIGHAKAALLNQHYQVNFKGK AKAALLNQHYQVNFKGKLIMRFDDTNPEKE K A A F K G 2 0 2 0 0 2 0 0 1 0 2 1 0 1 0 0 0 0 1 1 0 0 13 0 1544.81 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 217 229 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 3 4.6037E-13 122.51 3 2 0.53249 0.65696 91.069 4 Median 0.51271 0.64688 6.8054 3 0 Median 2.8162 3.8946 NaN 1 0 Median 79913000 50109000 29803000 69661000 48720000 20941000 10252000 1389100 8862500 65 1242 65 202;203;204;205;206 290;291;292;293;294;295;296;297;298 292 9 AALLTER EEKDEAEDLLGRGSRAALLTERTRNEMTAE DLLGRGSRAALLTERTRNEMTAEEKRRAHQ R A A E R T 2 1 0 0 0 0 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 7 0 772.4443 Q9Y5B9 Q9Y5B9 457 463 SUPT16H FACT complex subunit SPT16 yes yes 2 0.0045979 138.48 3 0.77797 1.0641 6.4198 3 Median 0.77797 1.0641 6.4198 3 0 Median NaN NaN NaN 0 0 Median 209830000 109410000 100420000 209830000 109410000 100420000 0 0 0 66 1829 66 207;208;209 299;300;301;302;303 302 5 AALPGLDVLIYLK DAMHEMEEMIETKGRAALPGLDVLIYLKIT GRAALPGLDVLIYLKITGLLFPTSDFWHPV R A A L K I 2 0 0 1 0 0 0 1 0 1 4 1 0 0 1 0 0 0 1 1 0 0 13 0 1384.833 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 538 550 NOP14 Nucleolar protein 14 yes no 2 0.0038115 99.788 4 1.3215 1.598 NaN 1 Median 1.3215 1.598 NaN 1 0 Median NaN NaN NaN 0 0 Median 27299000 12459000 14840000 27299000 12459000 14840000 0 0 0 67 652 67 210;211;212;213 304;305;306;307 304 4 AALQEELQLCK FCFTPHTEEGCLSERAALQEELQLCKGLVQ LSERAALQEELQLCKGLVQALQTKVTQQGL R A A C K G 2 0 0 0 1 2 2 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1301.6649 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1132 1142 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.026428 46.462 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6518200 0 6518200 0 0 0 6518200 0 6518200 68 486 68 214;215 308;309 309 2 AALQELLSK AVVSERLKIRGSLARAALQELLSKGLIKLV RGSLARAALQELLSKGLIKLVSKHRAQVIY R A A S K G 2 0 0 0 0 1 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 9 0 971.56515 P62851 P62851 86 94 RPS25 40S ribosomal protein S25 yes yes 1;2 1.3327E-05 140.09 5 2 0.83952 1.1098 13.014 6 Median 0.83254 1.0763 5.1223 4 0 Median 0.86027 1.3527 6.2079 2 0 Median 362890000 167780000 195110000 296380000 133260000 163120000 66506000 34519000 31986000 69 1413 69 216;217;218;219;220;221;222 310;311;312;313;314;315;316;317;318;319;320;321 311 12 AALRPLVK ______________________________ ______________________________ M A A V K P 2 1 0 0 0 0 0 0 0 0 2 1 0 0 1 0 0 0 0 1 0 0 8 1 866.57017 D3YTB1;A0A024R2G7;F8W727;P62910;D3YTI8 D3YTB1 2 9 RPL32 60S ribosomal protein L32 yes no 2 9.8972E-05 138.85 3 2 0.70843 0.93777 4.7409 5 Median 0.71012 0.93777 0.45941 3 0 Median 0.52679 0.90767 8.8263 2 0 Median 667850000 381340000 286510000 566990000 314640000 252350000 100860000 66699000 34158000 70 85 70 223;224;225;226;227 322;323;324;325;326;327;328 323 7 AALRPLVKPK ______________________________ ______________________________ M A A P K I 2 1 0 0 0 0 0 0 0 0 2 2 0 0 2 0 0 0 0 1 0 0 10 2 1091.7179 D3YTB1;A0A024R2G7;F8W727;P62910;D3YTI8 D3YTB1 2 11 RPL32 60S ribosomal protein L32 yes no 2;3 0.0027611 113.5 4 1 0.74212 0.88488 24.928 5 Median 0.74849 0.88881 27.303 4 0 Median 0.48087 0.84346 NaN 1 0 Median 590990000 339820000 251170000 553830000 314800000 239030000 37157000 25013000 12144000 71 85 71 228;229;230;231;232 329;330;331;332;333;334;335 329 6 AALSALESFLK VLLKWCAHTNVELKKAALSALESFLKQVSN ELKKAALSALESFLKQVSNMVAKNAEMHKN K A A L K Q 3 0 0 0 0 0 1 0 0 0 3 1 0 1 0 2 0 0 0 0 0 0 11 0 1148.6441 P78527;B4DL41 P78527 311 321 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 1.3358E-19 204.42 4 2 0.46466 0.58212 36.373 6 Median 0.44225 0.55804 6.1022 4 0 Median 0.71941 1.1242 2.3898 2 0 Median 160250000 101770000 58477000 98442000 65481000 32961000 61807000 36291000 25516000 72 1427 72 233;234;235;236;237;238 336;337;338;339;340;341;342;343;344;345;346;347 339 12 AALSASEGEEVPQDK RISGLGLTPEQKQKKAALSASEGEEVPQDK AALSASEGEEVPQDKAPSHVPFLLIGGGTA K A A D K A 3 0 0 1 0 1 3 1 0 0 1 1 0 0 1 2 0 0 0 1 0 0 15 0 1529.7209 O95831;Q5RZA0 O95831 113 127 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 2 1.0554E-21 177.04 4 2 0.64469 0.81389 33.976 6 Median 0.61364 0.77979 9.8711 4 0 Median 0.95689 1.4432 2.1006 2 0 Median 68729000 37680000 31048000 45088000 25696000 19392000 23641000 11984000 11657000 73 1224 73 239;240;241;242;243;244 348;349;350;351;352;353;354;355;356;357;358;359;360 349 13 AALTGLLHR SGTSYKDLMPHDLARAALTGLLHRTSVPKE PHDLARAALTGLLHRTSVPKEVVDYIIFGT R A A H R T 2 1 0 0 0 0 0 1 1 0 3 0 0 0 0 0 1 0 0 0 0 0 9 0 950.56615 P55084;D6W539;B4DY96;B5MD38;C9JEY0;C9JE81 P55084 82 90 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 3 0.016093 37.191 1 0.53719 0.7018 NaN 1 Median 0.53719 0.7018 NaN 1 0 Median NaN NaN NaN 0 0 Median 7706500 4871400 2835200 7706500 4871400 2835200 0 0 0 74 1378 74 245 361;362 361 2 AAMEALVVEVTK LQISHEAAACITGLRAAMEALVVEVTKQPA GLRAAMEALVVEVTKQPAIISQLDPVNERM R A A T K Q 3 0 0 0 0 0 2 0 0 0 1 1 1 0 0 0 1 0 0 3 0 0 12 0 1259.6795 Q08211;B3KU66 Q08211 1105 1116 DHX9 ATP-dependent RNA helicase A yes no 2 0.00062375 107.11 4 1 0.61036 0.77416 39.219 5 Median 0.67217 0.85088 44.123 4 0 Median 0.38172 0.59366 NaN 1 0 Median 64436000 43083000 21353000 31968000 20267000 11701000 32468000 22815000 9652600 75 1448 75;76 246;247;248;249;250 363;364;365;366;367;368;369 363 653 7 AANAAENDFSVSQAEMSSR LKKQMEYERQVASLKAANAAENDFSVSQAE AENDFSVSQAEMSSRQAMLENASDIKLEKF K A A S R Q 5 1 2 1 0 1 2 0 0 0 0 0 1 1 0 4 0 0 0 1 0 0 19 0 1983.8592 Q8NE71;Q2L6I2;Q59F96;H0YGW7;B4DNU2;Q5STZ8 Q8NE71 276 294 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 2.7924E-13 90.725 2 0.55323 0.82902 5.7124 2 Median NaN NaN NaN 0 0 Median 0.55323 0.82902 5.7124 2 0 Median 31526000 19837000 11688000 0 0 0 31526000 19837000 11688000 76 1653 77 251;252 370;371;372 371 731 3 AANLEMFK ASSPRSSSRMEERLKAANLEMFKGKGIEER RMEERLKAANLEMFKGKGIEERQQLIKQLR K A A F K G 2 0 1 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 8 0 922.45824 A0A0U1RRM1;Q8WXI9;B3KSZ4;A0A0U1RR34 A0A0U1RRM1 148 155 GATAD2B Transcriptional repressor p66-beta yes no 2 0.013745 54.205 1 1.0497 1.4499 NaN 1 Median NaN NaN NaN 0 0 Median 1.0497 1.4499 NaN 1 0 Median 5468600 2897100 2571500 0 0 0 5468600 2897100 2571500 77 488 78 253 373 373 172 1 AANPVDFLSK DLTLYHRTSVTDFLRAANPVDFLSKASEIM TDFLRAANPVDFLSKASEIMVDDEELAQHP R A A S K A 2 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 0 0 0 1 0 0 10 0 1060.5553 Q8IY81;B4DKU3 Q8IY81 260 269 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 1;2 0.0026201 127.76 5 2 0.72427 0.98673 7.662 6 Median 0.78662 0.98673 9.6669 4 0 Median 0.63605 0.96747 3.6102 2 0 Median 131860000 77425000 54438000 90687000 52457000 38229000 41176000 24967000 16209000 78 1628 79 254;255;256;257;258;259;260 374;375;376;377;378;379;380;381;382 376 9 AANVLLSEQGDVK LDYLHSEKKIHRDIKAANVLLSEQGDVKLA IKAANVLLSEQGDVKLADFGVAGQLTDTQI K A A V K L 2 0 1 1 0 1 1 1 0 0 2 1 0 0 0 1 0 0 0 2 0 0 13 0 1342.7092 Q9NWX4;Q8NBY1;B4E0Y9;Q9P289;Q499L9;C9JDH9;C9J6L2;C9JCC0;C9J232;H7C279;Q5CZ67;B4E185;B4DMA5;B3KRS6;A0A0S2Z4Y2;B4DVS7;Q96BA2;A0A024R4B2;O00506;C9JJV0 Q9NWX4 24 36 STK26;MST4;STK25;DKFZp686J1430 Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 25 yes no 2 0.00018244 131.82 3 0.40749 0.52203 3.8623 2 Median 0.40749 0.52203 3.8623 2 0 Median NaN NaN NaN 0 0 Median 31740000 26261000 5479200 31740000 26261000 5479200 0 0 0 79 886 80 261;262;263 383;384;385;386 383 4 AANVTLLTSLVEGEAVHLAR KLDKIGLNLPAGRRKAANVTLLTSLVEGEA LLTSLVEGEAVHLARDFGYVCETEFPAKAV K A A A R D 4 1 1 0 0 0 2 1 1 0 4 0 0 0 0 1 2 0 0 3 0 0 20 0 2063.1375 Q96SH1;P05549;Q6VUC0;B2R9E2;A8K557;Q92481 Q96SH1 285 304 TFAP2A;TFAP2E;TFAP2B Transcription factor AP-2-alpha;Transcription factor AP-2-epsilon;Transcription factor AP-2-beta yes no 2;3 1.9203E-65 154.55 6 1 0.57959 0.77585 15.585 6 Median 0.53824 0.71468 14.448 5 0 Median 0.6241 0.90942 NaN 1 0 Median 87214000 55620000 31594000 74560000 47824000 26736000 12654000 7796000 4857900 80 1238 81 264;265;266;267;268;269;270 387;388;389;390;391;392;393;394;395;396;397 393 11 AAPDILIATPGR AVGGLDVKSQEAALRAAPDILIATPGRLID ALRAAPDILIATPGRLIDHLHNCPSFHLSS R A A G R L 3 1 0 1 0 0 0 1 0 2 1 0 0 0 2 0 1 0 0 0 0 0 12 0 1193.6768 B7Z6D5;B3GQE6;Q96GQ7;A0A087X059 B7Z6D5 307 318 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 1.6889E-12 141.91 3 2 0.75058 1.0269 7.0566 5 Median 0.80486 1.1089 4.563 3 0 Median 0.59406 0.96525 0.1003 2 0 Median 277240000 160340000 116900000 143280000 78385000 64892000 133960000 81950000 52013000 81 750 82 271;272;273;274;275 398;399;400;401;402;403;404;405;406;407 401 10 AAPDPVLEAGPVAHGPLPVPLVLDNGSFQVR ______________________________ LPVPLVLDNGSFQVRAGWACPGQDPGPEPR R A A V R A 4 1 1 2 0 1 1 3 1 0 4 0 0 1 6 1 0 0 0 5 0 0 31 0 3131.6768 Q9H9F9 Q9H9F9 13 43 ACTR5 Actin-related protein 5 yes yes 3 1.9356E-08 80.832 3 0.60735 0.82288 10.05 3 Median 0.60735 0.82288 10.05 3 0 Median NaN NaN NaN 0 0 Median 18608000 10828000 7780200 18608000 10828000 7780200 0 0 0 82 1745 83 276;277;278 408;409;410;411;412 408 5 AAPEEPQQRPPEAVAAAPAGTTSSR RPPEQQDQEGGEAAKAAPEEPQQRPPEAVA PEAVAAAPAGTTSSRVLRGGRDRGRAAAAA K A A S R V 7 2 0 0 0 2 3 1 0 0 0 0 0 0 5 2 2 0 0 1 0 0 25 1 2488.2306 A0A0A6YYC7;A0A024R4Z4;A0A024R4Z1;Q96JP5 A0A0A6YYC7 24 48 ZFP91-CNTF;hCG_2042749;ZFP91 E3 ubiquitin-protein ligase ZFP91 yes no 3 0.00026405 34.418 2 0.54923 0.73906 7.7015 2 Median NaN NaN NaN 0 0 Median 0.54923 0.73906 7.7015 2 0 Median 11459000 6323900 5135200 0 0 0 11459000 6323900 5135200 83 131 84 279;280 413;414;415 414 3 AAPEERDLTQEQTEK ______________________________ AAPEERDLTQEQTEKLLQFQDLTGIESMDQ M A A E K L 2 1 0 1 0 2 4 0 0 0 1 1 0 0 1 0 2 0 0 0 0 0 15 1 1743.8275 Q96CS3;B4E2M8 Q96CS3 2 16 FAF2 FAS-associated factor 2 yes no 2 0.0020003 109.44 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 961260 961260 0 961260 961260 0 0 0 0 84 1683 85 281 416 416 1 AAPLAAPPPAPAAPPAVAPPAGPR PPSPGPAQPGPRAQRAAPLAAPPPAPAAPP APAAPPAVAPPAGPRRAPPPAVAAREPPLP R A A P R R 10 1 0 0 0 0 0 1 0 0 1 0 0 0 10 0 0 0 0 1 0 0 24 0 2124.1844 Q6SPF0 Q6SPF0 174 197 SAMD1 Atherin yes yes 2 2.5545E-20 109.22 4 2 0.65403 0.89349 5.4667 6 Median 0.68683 0.91705 6.3113 4 0 Median 0.54817 0.88455 3.2402 2 0 Median 150450000 95829000 54622000 44545000 25167000 19378000 105910000 70661000 35245000 85 1599 86 282;283;284;285;286;287 417;418;419;420;421;422;423;424;425;426;427;428;429;430 424 14 AAPLDSIHSLAAYYIDCIR ASRLSIPTYGLQCTRAAPLDSIHSLAAYYI DSIHSLAAYYIDCIRQVQPEGPYRVAGYSY R A A I R Q 4 1 0 2 1 0 0 0 1 3 2 0 0 0 1 2 0 0 2 0 0 0 19 0 2148.0674 A0A0U1RQF0;P49327 A0A0U1RQF0 2274 2292 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 4.6021E-08 111.58 3 0.74236 1.0052 18.335 3 Median 0.74236 1.0052 18.335 3 0 Median NaN NaN NaN 0 0 Median 19476000 11662000 7813900 19476000 11662000 7813900 0 0 0 86 486 87 288;289;290 431;432;433;434;435;436 434 6 AAPQSPSVPK KCITDTLQELVNQSKAAPQSPSVPKKPGPP VNQSKAAPQSPSVPKKPGPPVLSSDPNMLS K A A P K K 2 0 0 0 0 1 0 0 0 0 0 1 0 0 3 2 0 0 0 1 0 0 10 0 980.5291 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 950 959 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.020823 53.968 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3698200 3698200 0 3698200 3698200 0 0 0 0 87 29 88 291 437 437 1 AAPSDGFKPR ______________________________ ______________________________ M A A P R E 2 1 0 1 0 0 0 1 0 0 0 1 0 1 2 1 0 0 0 0 0 0 10 1 1044.5352 A8K6D2;Q92979;B4DQC7;B4DP65 A8K6D2 2 11 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 2 6.7475E-05 102.51 3 0.99949 1.3085 3.0857 3 Plateau 0.99949 1.3085 3.0857 3 0 Plateau NaN NaN NaN 0 0 Median 85029000 40042000 44988000 85029000 40042000 44988000 0 0 0 88 623 89 292;293;294 438;439;440;441 439 4 AAQAETRISAGAESVASVVAESTPLK A A L K 7 1 0 0 0 1 3 1 0 1 1 1 0 0 1 4 2 0 0 3 0 0 26 1 2542.3239 REV__B4E278 yes yes 3 0.0010244 48.489 2 0.94349 1.2466 1.4708 2 Median 0.94349 1.2466 1.4708 2 0 Median NaN NaN NaN 0 0 Median 108070000 51660000 56414000 108070000 51660000 56414000 0 0 0 + 89 1849 90 295;296 442;443 442 2 AAQAPSSFQLLYDLK EGGKGALALAQAVQRAAQAPSSFQLLYDLK AAQAPSSFQLLYDLKLPVEDKIRIIAQKIY R A A L K L 3 0 0 1 0 2 0 0 0 0 3 1 0 1 1 2 0 0 1 0 0 0 15 0 1650.8617 A0A024R652;F5H2F4;B7Z809;P11586 A0A024R652 805 819 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.00051617 67.997 2 0.35827 0.45257 44.557 2 Median 0.35827 0.45257 44.557 2 0 Median NaN NaN NaN 0 0 Median 18979000 14868000 4110600 18979000 14868000 4110600 0 0 0 90 154 91 297;298 444;445 445 2 AAQDLCEEALR FMKSVKLEWVQDNIRAAQDLCEEALRHYED DNIRAAQDLCEEALRHYEDFPKLWMMKGQI R A A L R H 3 1 0 1 1 1 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1274.5925 O94906 O94906 693 703 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 1.5303E-05 109.42 4 0.58363 0.77203 NaN 1 Median 0.58363 0.77203 NaN 1 0 Median NaN NaN NaN 0 0 Median 15207000 11216000 3991100 15207000 11216000 3991100 0 0 0 91 1212 92 299;300;301;302 446;447;448;449;450 449 5 AAQDRDQIYR SRSYRGGGGGGGGWRAAQDRDQIYRRRSPS GGGWRAAQDRDQIYRRRSPSPYYSRGGYRS R A A Y R R 2 2 0 2 0 2 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 10 1 1234.6054 Q8N1H4;Q68DZ9;Q59GA1;B2RDQ3;P62995;H7C2L4 Q8N1H4 216 225 DKFZp686F18120;TRA2B Transformer-2 protein homolog beta yes no 3 0.0089745 42.336 1 0.74736 0.96252 NaN 1 Median 0.74736 0.96252 NaN 1 0 Median NaN NaN NaN 0 0 Median 6570000 3545200 3024800 6570000 3545200 3024800 0 0 0 92 740 93 303 451 451 1 AAQGEPQVQFK ______________________________ ______________________________ M A A F K L 2 0 0 0 0 3 1 1 0 0 0 1 0 1 1 0 0 0 0 1 0 0 11 0 1201.6091 B5MDF5;P62826;A0A087X0W0 B5MDF5 2 12 RAN GTP-binding nuclear protein Ran yes no 2 0.0090748 48.794 1 0.61498 0.7849 NaN 1 Median 0.61498 0.7849 NaN 1 0 Median NaN NaN NaN 0 0 Median 14181000 8330000 5850600 14181000 8330000 5850600 0 0 0 93 901 94 304 452 452 1 AAQIFITELTLR DVKMISAEAPVLFAKAAQIFITELTLRAWI FAKAAQIFITELTLRAWIHTEDNKRRTLQR K A A L R A 2 1 0 0 0 1 1 0 0 2 2 0 0 1 0 0 2 0 0 0 0 0 12 0 1374.7871 Q5T6K7;E9PI99;A0A0A0MT00;Q5T6K5;Q13952;E9PL11 Q5T6K7 72 83 NFYC Nuclear transcription factor Y subunit gamma yes no 2 0.013463 97.456 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1106000 1106000 0 1106000 1106000 0 0 0 0 94 402 95 305 453 453 1 AAQIPIVATTSTPGIVR ______________________________ QIPIVATTSTPGIVRNSKKRPASPSHNGSS M A A V R N 3 1 0 0 0 1 0 1 0 3 0 0 0 0 2 1 3 0 0 2 0 0 17 0 1693.9727 Q6PI98;K7EQ79;K7ELX9;K7ENM4;K7ENP7 Q6PI98 2 18 INO80C INO80 complex subunit C yes no 2 0.0020631 77.912 1 0.64978 0.91263 NaN 1 Median 0.64978 0.91263 NaN 1 0 Median NaN NaN NaN 0 0 Median 1377800 565130 812620 1377800 565130 812620 0 0 0 95 1595 96 306 454 454 1 AAQLAIR AHNVSSKNRKAIVERAAQLAIRVTNPNARL NRKAIVERAAQLAIRVTNPNARLRSEE___ R A A I R V 3 1 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 7 0 741.44972 D3YTB1;A0A024R2G7;F8W727;P62910 D3YTB1 115 121 RPL32 60S ribosomal protein L32 yes no 2 0.0036035 142.53 4 2 0.73386 1.017 3.7164 6 Median 0.75252 1.0336 1.8946 4 0 Median 0.59534 0.96729 0.21039 2 0 Median 1303300000 747860000 555450000 1169400000 663780000 505660000 133880000 84088000 49796000 96 85 97 307;308;309;310;311;312 455;456;457;458;459;460;461;462;463;464;465;466;467 460 13 AAQSLLNK STTAEKTDEEEKEDRAAQSLLNKLIRSNLV EEEKEDRAAQSLLNKLIRSNLVDNTNQVEV R A A N K L 2 0 1 0 0 1 0 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 8 0 843.48142 I3L0H8;Q9HBZ9;F6QDS0;Q9NUU7;B4DS24;Q2NL95;Q7Z4W5;A0A0U4B4U6;H3BQK0;Q9UMR2;Q53G16;H3BTB3;H3BMQ5;H3BN59 I3L0H8 56 63 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 2 0.016359 62.978 1 0.41281 0.53786 NaN 1 Median 0.41281 0.53786 NaN 1 0 Median NaN NaN NaN 0 0 Median 4952200 3486600 1465600 4952200 3486600 1465600 0 0 0 97 1058 98 313 468 468 1 AAQVLVQELEQYQLLPK YFLIARYLSAGPCRRAAQVLVQELEQYQLL QVLVQELEQYQLLPKRLDWEGNEHNRSYEE R A A P K R 2 0 0 0 0 4 2 0 0 0 4 1 0 0 1 0 0 0 1 2 0 0 17 0 1969.0884 Q9NSI6;A5PLN2 Q9NSI6 34 50 BRWD1 Bromodomain and WD repeat-containing protein 1 yes no 2 1.0771E-18 160.18 4 0.81882 1.0424 13.98 4 Median 0.81882 1.0424 13.98 4 0 Median NaN NaN NaN 0 0 Median 25514000 13849000 11665000 25514000 13849000 11665000 0 0 0 98 1758 99 314;315;316;317 469;470;471;472;473;474 471 6 AAREELLAEFGSGTLDLPALTR AVPVWDVLASGYVSRAAREELLAEFGSGTL AEFGSGTLDLPALTRRLTAIIEEAEEAPGA R A A T R R 4 2 0 1 0 0 3 2 0 0 5 0 0 1 1 1 2 0 0 0 0 0 22 1 2329.2278 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 2548 2569 EPPK1 Epiplakin no no 3 5.5378E-06 88.418 2 1 0.68895 0.95316 159.24 3 Median 0.67292 0.93102 3.3242 2 0 Median 9.9786 14.678 NaN 1 0 Median 26765000 6241000 20524000 8853800 5247300 3606600 17911000 993740 16918000 99 373;1386 100 318;319;320 475;476;477;478;479 478 5 AARPPPAASATPTAQPLPQPPAPR EEPRLALSLFRPGGRAARPPPAASATPTAQ ATPTAQPLPQPPAPRAPEGDDFLSLHAESD R A A P R A 7 2 0 0 0 2 0 0 0 0 1 0 0 0 9 1 2 0 0 0 0 0 24 1 2359.2761 A0A024QZH6 A0A024QZH6 416 439 SR-A1 yes yes 3 0.00030438 94.234 3 0.66632 0.86824 13.605 2 Median 0.66632 0.86824 13.605 2 0 Median NaN NaN NaN 0 0 Median 12981000 7395800 5585300 12981000 7395800 5585300 0 0 0 100 14 101 321;322;323 480;481;482;483 482 4 AASADSTTEGTPADGFTVLSTK KGARKSKKKQGEVSKAASADSTTEGTPADG TEGTPADGFTVLSTKSLFLGQKLNLIHSEI K A A T K S 4 0 0 2 0 0 1 2 0 0 1 1 0 1 1 3 5 0 0 1 0 0 22 0 2126.0015 O75367 O75367 168 189 H2AFY Core histone macro-H2A.1 yes yes 2;3 8.4174E-252 338.78 17 4 0.86201 1.1086 8.5598 20 Median 0.86373 1.1086 6.1607 16 0 Median 0.74401 1.1535 14.135 4 0 Median 3836600000 2094300000 1742300000 2669000000 1424000000 1245000000 1167600000 670310000 497250000 101 1198 102 324;325;326;327;328;329;330;331;332;333;334;335;336;337;338;339;340;341;342;343;344 484;485;486;487;488;489;490;491;492;493;494;495;496;497;498;499;500;501;502;503;504;505;506;507;508;509;510;511;512;513;514;515;516;517;518;519;520;521 518 38 AASDPLLSSVSPAVSK GVVGGLSGGALSPLRAASDPLLSSVSPAVS ASDPLLSSVSPAVSKASSRRSSFSMEEES_ R A A S K A 3 0 0 1 0 0 0 0 0 0 2 1 0 0 2 5 0 0 0 2 0 0 16 0 1527.8144 A0A024QZ23;P19532;B4DIA5 A0A024QZ23 546 561 TFE3 Transcription factor E3 yes no 2 4.684E-09 97.463 2 1.0269 1.3394 9.0521 2 Median 1.0269 1.3394 9.0521 2 0 Median NaN NaN NaN 0 0 Median 7435500 3403100 4032400 7435500 3403100 4032400 0 0 0 102 4 103 345;346 522;523;524 524 3 AASGLDHLK ______________________________ ______________________________ M A A L K N 2 0 0 1 0 0 0 1 1 0 2 1 0 0 0 1 0 0 0 0 0 0 9 0 910.48723 Q03188 Q03188 2 10 CENPC Centromere protein C yes yes 2 0.0089946 62.969 2 2 0.68271 0.92693 4.3672 4 Median 0.73018 0.9047 3.1519 2 0 Median 0.63152 0.95608 4.0953 2 0 Median 65721000 37160000 28560000 35971000 19396000 16575000 29750000 17765000 11985000 103 1439 104 347;348;349;350 525;526;527;528 528 4 AASITSEVFNK TIAVKEDGELNLMKKAASITSEVFNKFFKE LMKKAASITSEVFNKFFKERVMEIVDADEK K A A N K F 2 0 1 0 0 0 1 0 0 1 0 1 0 1 0 2 1 0 0 1 0 0 11 0 1165.5979 Q9Y5B9;Q0VGA3 Q9Y5B9 186 196 SUPT16H FACT complex subunit SPT16 yes no 2 1.1205E-06 133.13 5 2 0.76006 1.0834 6.4419 6 Median 0.7914 1.0278 6.112 4 0 Median 0.70923 1.1243 3.4063 2 0 Median 581040000 324140000 256900000 401380000 218990000 182390000 179660000 105150000 74504000 104 1829 105 351;352;353;354;355;356;357 529;530;531;532;533;534;535;536;537;538;539 535 11 AASVHTVGEDTEETPHR LIGPLSHSILTEAIKAASVHTVGEDTEETP SVHTVGEDTEETPHRWWIETCKKPDSVSLH K A A H R W 2 1 0 1 0 0 3 1 2 0 0 0 0 0 1 1 3 0 0 2 0 0 17 0 1834.8446 Q96F88;Q99575 Q96F88 449 465 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 3 1.3258E-06 127.2 2 1 0.39143 0.52298 22.302 2 Median 0.45555 0.61231 NaN 1 0 Median 0.33634 0.44668 NaN 1 0 Median 25358000 19377000 5980800 20651000 15897000 4754100 4706600 3479900 1226700 105 1685 106 358;359;360 540;541;542;543 543 4 AASVVQPQPLVVVK SPPQQNVQPKKQELRAASVVQPQPLVVVKE RAASVVQPQPLVVVKEEKIHSPIIRSEPFS R A A V K E 2 0 0 0 0 2 0 0 0 0 1 1 0 0 2 1 0 0 0 5 0 0 14 0 1433.8606 O60885 O60885 1098 1111 BRD4 Bromodomain-containing protein 4 yes yes 2 0.0052738 71.451 1 1.0895 1.4125 NaN 1 Median 1.0895 1.4125 NaN 1 0 Median NaN NaN NaN 0 0 Median 4807600 2007400 2800100 4807600 2007400 2800100 0 0 0 106 1194 107 361 544 544 0 AATAAADFTAK KGAVWGATLNKDATKAATAAADFTAKVWDA DATKAATAAADFTAKVWDAVSGDELMTLAH K A A A K V 6 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 2 0 0 0 0 0 11 0 1036.5189 Q9Y3F4 Q9Y3F4 74 84 STRAP Serine-threonine kinase receptor-associated protein yes yes 2 5.9752E-10 157.34 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8816300 8816300 0 8816300 8816300 0 0 0 0 107 1818 108 362 545 545 1 AATAGAQVLLRARRSPALLR ______________________________ AQVLLRARRSPALLRTPALRSTATFAQALQ R A A L R T 6 4 0 0 0 1 0 1 0 0 4 0 0 0 1 1 1 0 0 1 0 0 20 3 2090.2549 P31930 P31930 9 28 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 2 0.040687 69.229 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 108 1310 109 363 546 546 1 AATENIPVVR LLNNVHLSHPVYVRRAATENIPVVRRPDRK VYVRRAATENIPVVRRPDRKDLLGYLNGEA R A A V R R 2 1 1 0 0 0 1 0 0 1 0 0 0 0 1 0 1 0 0 2 0 0 10 0 1068.5928 Q6P1J9;A0A1B0GUB2;B4DV47 Q6P1J9 78 87 CDC73 Parafibromin yes no 2 4.4937E-05 137.13 3 1 0.91657 1.2244 86.922 3 Median 0.77486 1.0315 24.238 2 0 Median 3.2382 4.5133 NaN 1 0 Median 49284000 27581000 21703000 40392000 25596000 14796000 8891600 1985100 6906500 109 1590 110 364;365;366;367 547;548;549;550;551 547 5 AATFGLILDDVSLTHLTFGK RELVSRQVSDDLTERAATFGLILDDVSLTH LILDDVSLTHLTFGKEFTEAVEAKQVAQQE R A A G K E 2 0 0 2 0 0 0 2 1 1 4 1 0 2 0 1 3 0 0 1 0 0 20 0 2118.1361 Q6PUJ7;A8K401;P35232;Q53FV0;C9JW96;C9JZ20;E7ESE2;E9PCW0 Q6PUJ7 158 177 HEL-S-54e;PHB Prohibitin yes no 2;3 2.8156E-97 246.31 6 0.60666 0.79684 13.019 6 Median 0.60666 0.79684 13.019 6 0 Median NaN NaN NaN 0 0 Median 414490000 256280000 158210000 414490000 256280000 158210000 0 0 0 110 600 111 368;369;370;371;372;373 552;553;554;555;556;557;558;559;560;561;562 555 11 AATILTK FEDDIDFDVYFRKTKAATILTKSTLENQNW DVYFRKTKAATILTKSTLENQNWRATTLPT K A A T K S 2 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 2 0 0 0 0 0 7 0 716.44324 Q15003;B4DRG7;E9PHA2;A8K4T8;C9J470 Q15003 489 495 NCAPH Condensin complex subunit 2 yes no 2 0.023767 71.134 1 0.47982 0.6974 NaN 1 Median NaN NaN NaN 0 0 Median 0.47982 0.6974 NaN 1 0 Median 6669300 4346400 2322900 0 0 0 6669300 4346400 2322900 111 1500 112 374 563 563 1 AATMTAAGHHAEVVVDPEDER DGSDDEDEEWPTLEKAATMTAAGHHAEVVV AGHHAEVVVDPEDERAIEMFMNKNPPARRT K A A E R A 5 1 0 2 0 0 3 1 2 0 0 0 1 0 1 0 2 0 0 3 0 0 21 0 2205.012 Q13895;F8WBL2 Q13895 111 131 BYSL Bystin yes no 3 4.5534E-08 64.203 1 0.83206 1.2108 NaN 1 Median NaN NaN NaN 0 0 Median 0.83206 1.2108 NaN 1 0 Median 12482000 6805000 5676600 0 0 0 12482000 6805000 5676600 112 1480 113 375 564;565 565 666 2 AAVATFLQSVQVPEFTPK NLFAQTYGLTGSQDRAAVATFLQSVQVPEF ATFLQSVQVPEFTPKSGVKIHVSDQELQSA R A A P K S 3 0 0 0 0 2 1 0 0 0 1 1 0 2 2 1 2 0 0 3 0 0 18 0 1932.0357 A0A024R1A3;P22314;Q5JRR6;B3KUJ2;B4DDE4;B4DL67 A0A024R1A3 785 802 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 9.5164E-62 211.77 4 0.53926 0.68203 13.19 4 Median 0.53926 0.68203 13.19 4 0 Median NaN NaN NaN 0 0 Median 36092000 23105000 12987000 36092000 23105000 12987000 0 0 0 113 55 114 376;377;378;379 566;567;568;569;570;571;572;573;574;575 567 10 AAVAVVPLVSEDK PLSSSSVLQEPPAKKAAVAVVPLVSEDKSV KKAAVAVVPLVSEDKSVTVPEAENPRDSLV K A A D K S 3 0 0 1 0 0 1 0 0 0 1 1 0 0 1 1 0 0 0 4 0 0 13 0 1296.7289 B4DLG2;O75152 B4DLG2 646 658 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 2 4.1873E-05 81.338 2 1.4019 1.9572 NaN 1 Median NaN NaN NaN 0 0 Median 1.4019 1.9572 NaN 1 0 Median 5923500 1900700 4022800 0 0 0 5923500 1900700 4022800 114 826 115 380;381 576;577 577 2 AAVEEGIVLGGGCALLR NEKKDRVTDALNATRAAVEEGIVLGGGCAL VEEGIVLGGGCALLRCIPALDSLTPANEDQ R A A L R C 3 1 0 0 1 0 2 4 0 1 3 0 0 0 0 0 0 0 0 2 0 0 17 0 1683.8978 B7Z5E7;B7Z4F6;B7Z597;B3GQS7;A0A024R3X4;P10809 B7Z5E7 374 390 HSPD1 60 kDa heat shock protein, mitochondrial yes no 2 2.6681E-09 84.479 1 0.58466 0.79552 NaN 1 Median 0.58466 0.79552 NaN 1 0 Median NaN NaN NaN 0 0 Median 5262600 3562000 1700600 5262600 3562000 1700600 0 0 0 115 110 116 382 578 578 1 AAVELEEPEDAR RKALEHVPNSVRLWKAAVELEEPEDARIML LWKAAVELEEPEDARIMLSRAVECCPTSVE K A A A R I 3 1 0 1 0 0 4 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 12 0 1327.6256 O94906 O94906 409 420 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.02719 37.696 1 1.0938 1.5157 NaN 1 Median NaN NaN NaN 0 0 Median 1.0938 1.5157 NaN 1 0 Median 11250000 5134400 6115500 0 0 0 11250000 5134400 6115500 116 1212 117 383 579 579 1 AAVENLPTFLVELSR PDRLELEAAQKFLERAAVENLPTFLVELSR AAVENLPTFLVELSRVLANPGNSQVARVAA R A A S R V 2 1 1 0 0 0 2 0 0 0 3 0 0 1 1 1 1 0 0 2 0 0 15 0 1657.9039 B2RBR9;Q14974;J3QR48 B2RBR9 28 42 KPNB1 Importin subunit beta-1 yes no 2 1.4993E-09 137.4 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5491400 5491400 0 5491400 5491400 0 0 0 0 117 730 118 384;385;386 580;581;582 581 3 AAVESLGFILFR LLHVAVSDVNDDVRRAAVESLGFILFRTPE VRRAAVESLGFILFRTPEQCPSVVSLLSES R A A F R T 2 1 0 0 0 0 1 1 0 1 2 0 0 2 0 1 0 0 0 1 0 0 12 0 1321.7394 H7C378;Q05BX4;Q05CW6;B2R6D0;A0A087WW66;Q99460 H7C378 110 121 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 2 0.0019505 67.563 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1679100 1679100 0 1679100 1679100 0 0 0 0 118 354 119 387 583 583 1 AAVIGDVIR ITVEHLAIKCHWTQRAAVIGDVIRVYSGHQ CHWTQRAAVIGDVIRVYSGHQGRTIIFCET R A A I R V 2 1 0 1 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 2 0 0 9 0 912.53927 Q9NR30 Q9NR30 424 432 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.005548 98.458 3 1 0.65756 0.89315 2.443 4 Median 0.66751 0.90151 1.3363 3 0 Median 0.53065 0.85969 NaN 1 0 Median 151310000 92107000 59205000 109780000 65812000 43967000 41533000 26295000 15238000 119 1756 120 388;389;390;391 584;585;586;587;588;589 584 6 AAVIGPDVFAK DPKANKGHSVEEALRAAVIGPDVFAKLLSA EALRAAVIGPDVFAKLLSAERAVTGYTDPY R A A A K L 3 0 0 1 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 2 0 0 11 0 1086.6073 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 670 680 EPPK1 Epiplakin no no 2 0.014345 44.203 1 0.57701 0.73233 NaN 1 Median 0.57701 0.73233 NaN 1 0 Median NaN NaN NaN 0 0 Median 11816000 8114000 3702000 11816000 8114000 3702000 0 0 0 120 373;1386 121 392 590 590 1 AAVTSLFAK LATTQTDTMLSAEEKAAVTSLFAKVKVDEV LSAEEKAAVTSLFAKVKVDEVGGEALGRLL K A A A K V 3 0 0 0 0 0 0 0 0 0 1 1 0 1 0 1 1 0 0 1 0 0 9 0 906.51747 CON__Q3SX09 CON__Q3SX09 64 72 yes yes 2 2.2385E-06 147.34 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45127000 45127000 0 45127000 45127000 0 0 0 0 + 121 969 122 393;394;395 591;592;593 591 3 AAVYSGISLK ______________________________ ______________________________ M A A L K L 2 0 0 0 0 0 0 1 0 1 1 1 0 0 0 2 0 0 1 1 0 0 10 0 1007.5651 A8K4P8;Q14146;Q6PCC8 A8K4P8 2 11 URB2 Unhealthy ribosome biogenesis protein 2 homolog yes no 1 0.039699 52.786 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 191620 191620 0 191620 191620 0 0 0 0 122 606 123 396 594 594 1 AAYEAELGDAR TESEEVVSREVSGIKAAYEAELGDARKTLD SGIKAAYEAELGDARKTLDSVAKERARLQL K A A A R K 4 1 0 1 0 0 2 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 11 0 1164.5411 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;W5X314 P02545 79 89 LMNA Prelamin-A/C;Lamin-A/C yes no 2 0.00015506 87.806 2 2 1.0029 1.4635 68.382 4 Median 0.58498 0.7975 12.138 2 0 Median 1.6761 2.5856 6.7682 2 0 Median 114100000 56559000 57544000 70446000 40437000 30009000 43657000 16122000 27535000 123 1229 124 397;398;399;400 595;596;597;598;599;600 597 6 AAYEAELGDARK TESEEVVSREVSGIKAAYEAELGDARKTLD GIKAAYEAELGDARKTLDSVAKERARLQLE K A A R K T 4 1 0 1 0 0 2 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 12 1 1292.6361 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;W5X314 P02545 79 90 LMNA Prelamin-A/C;Lamin-A/C yes no 2;3 1.1056E-05 132.25 5 3 0.7263 0.96115 52.65 7 Median 0.70482 0.92582 4.5478 5 0 Median 1.6343 2.7321 8.8359 2 0 Median 567780000 325350000 242430000 505860000 294780000 211080000 61922000 30565000 31356000 124 1229 125 401;402;403;404;405;406;407;408 601;602;603;604;605;606;607;608;609;610;611;612;613 606 13 AAYFGIYDTAK YQGFNVSVQGIIIYRAAYFGIYDTAKGMLP IIYRAAYFGIYDTAKGMLPDPKNTHIVISW R A A A K G 3 0 0 1 0 0 0 1 0 1 0 1 0 1 0 0 1 0 2 0 0 0 11 0 1218.5921 Q6NVC0;P05141 Q6NVC0 214 224 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes no 2 0.0033017 60.398 2 3.9025 5.5806 22.363 2 Median NaN NaN NaN 0 0 Median 3.9025 5.5806 22.363 2 0 Median 12221000 2722000 9499400 0 0 0 12221000 2722000 9499400 125 1234 126 409;410 614;615 614 2 AAYLNMSEDPSHPSMALNTR KLLEQALVIEEQLRRAAYLNMSEDPSHPSM MSEDPSHPSMALNTRFAEVECLAESHQHLS R A A T R F 3 1 2 1 0 0 1 0 1 0 2 0 2 0 2 3 1 0 1 0 0 0 20 0 2203.999 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 1776 1795 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 0.0030928 43.955 1 1.0437 1.489 NaN 1 Median NaN NaN NaN 0 0 Median 1.0437 1.489 NaN 1 0 Median 9716700 4473100 5243600 0 0 0 9716700 4473100 5243600 126 428 127 411 616 616 139;140 1 AAYLSDPR TLKDLLLNTMSQEEKAAYLSDPRAPPCEYK TMSQEEKAAYLSDPRAPPCEYKDWLTKMSG K A A P R A 2 1 0 1 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 8 0 891.44503 P78527 P78527 3826 3833 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.013568 67.032 1 0.8576 1.2113 NaN 1 Median NaN NaN NaN 0 0 Median 0.8576 1.2113 NaN 1 0 Median 6040700 2903300 3137400 0 0 0 6040700 2903300 3137400 127 1427 128 412 617;618 618 2 AAYPDLENPPLLVTPSQQAK NIISRLQEVFGHAIKAAYPDLENPPLLVTP LENPPLLVTPSQQAKFGDYQCNSAMGISQM K A A A K F 3 0 1 1 0 2 1 0 0 0 3 1 0 0 4 1 1 0 1 1 0 0 20 0 2151.1212 P54136;E5RJM9 P54136 90 109 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 1.4013E-15 130.66 3 0.5083 0.63397 19.961 3 Median 0.5083 0.63397 19.961 3 0 Median NaN NaN NaN 0 0 Median 20317000 12446000 7871000 20317000 12446000 7871000 0 0 0 128 1373 129 413;414;415 619;620;621;622;623;624 622 6 ACARPLISVYSEK ______________________________ ______________________________ M A C E K G 2 1 0 0 1 0 1 0 0 1 1 1 0 0 1 2 0 0 1 1 0 0 13 1 1492.7708 P36578;B4DFI6;B4DMJ6;Q53G74;H3BTP7;H3BU31;B4DP82 P36578 2 14 RPL4 60S ribosomal protein L4 yes no 2 1.8927E-29 185.25 4 2 0.70649 0.9398 5.5283 6 Median 0.73797 0.97157 6.2656 4 0 Median 0.54784 0.92759 0.50051 2 0 Median 653290000 363200000 290090000 597890000 331310000 266580000 55400000 31889000 23511000 129 1325 130 416;417;418;419;420;421 625;626;627;628;629;630;631;632;633;634;635;636;637;638 631 14 ACAVETSVDLSEISSK GKVIGLQIFNIDTDRACAVETSVDLSEISS CAVETSVDLSEISSKLGSTQSGFLVEESLP R A C S K L 2 0 0 1 1 0 2 0 0 1 1 1 0 0 0 4 1 0 0 2 0 0 16 0 1694.8033 E9PEI0;Q69YH5;A8K8Z0;B7Z5Q5 E9PEI0 219 234 CDCA2 Cell division cycle-associated protein 2 yes no 2 7.5836E-16 140.45 3 0.72253 0.90781 5.8389 2 Median 0.72253 0.90781 5.8389 2 0 Median NaN NaN NaN 0 0 Median 12561000 7509700 5051500 12561000 7509700 5051500 0 0 0 130 1023 131 422;423;424 639;640;641 640 3 ACDELELHQR NIHRLHVKRSMGWKKACDELELHQRFLREG MGWKKACDELELHQRFLREGRFWKSKNEDR K A C Q R F 1 1 0 1 1 1 2 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1269.5772 Q5BJG6;B7Z3W2;J3QKD2;Q15326;Q6PJR5;A0A0A0MRY2;B0QZE2;B7Z2J6;E7ENI9;Q5UGI2;B7Z3Z1 Q5BJG6 252 261 ZMYND11 Zinc finger MYND domain-containing protein 11 yes no 2;3 0.00012405 131.22 6 1.0655 1.435 29.137 4 Median 1.0655 1.435 29.137 4 0 Median NaN NaN NaN 0 0 Median 40055000 20327000 19728000 40055000 20327000 19728000 0 0 0 131 906 132 425;426;427;428;429;430 642;643;644;645;646;647;648;649;650;651 642 10 ACFSANGEEVLATSTHSK PKIQSIYLERFPIFKACFSANGEEVLATST SANGEEVLATSTHSKVLYVYDMLAGKLIPV K A C S K V 3 0 1 0 1 0 2 1 1 0 1 1 0 1 0 3 2 0 0 1 0 0 18 0 1907.8683 Q9Y5J1;B2RAX6;J3KSR7 Q9Y5J1 301 318 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2;3 1.3254E-24 161.48 5 1.0149 1.2494 7.0394 4 Median 1.0149 1.2494 7.0394 4 0 Median NaN NaN NaN 0 0 Median 103470000 49711000 53763000 103470000 49711000 53763000 0 0 0 132 1830 133 431;432;433;434;435 652;653;654;655;656;657;658 652 7 ACGDSTLTQITAGLDPVGR QEAEQLRNQIRDARKACGDSTLTQITAGLD STLTQITAGLDPVGRIQMRTRRTLRGHLAK K A C G R I 2 1 0 2 1 1 0 3 0 1 2 0 0 0 1 1 3 0 0 1 0 0 19 0 1930.9418 C9JZN1;C9JIS1;C9JXA5;Q6FHM2;P62879 C9JZN1 24 42 GNB2 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 yes no 2 3.5392E-06 63.894 2 0.76435 1.0344 3.5043 2 Median 0.76435 1.0344 3.5043 2 0 Median NaN NaN NaN 0 0 Median 13111000 7466300 5644300 13111000 7466300 5644300 0 0 0 133 938 134 436;437 659;660 660 2 ACGLVASNLNLKPGECLR ______________________________ LVASNLNLKPGECLRVRGEVAPDAKSFVLN M A C L R V 2 1 2 0 2 0 1 2 0 0 4 1 0 0 1 1 0 0 0 1 0 0 18 1 1971.003 P09382;F8WEI7 P09382 2 19 LGALS1 Galectin-1 yes no 2 1.6227E-22 124.51 4 0.39627 0.50946 14.117 3 Plateau 0.39627 0.50946 14.117 3 0 Plateau NaN NaN NaN 0 0 Median 13034000 10781000 2253800 13034000 10781000 2253800 0 0 0 134 1247 135 438;439;440;441 661;662;663;664;665 664 5 ACGNFGIPCELR MGSTSDLGHCEKIKKACGNFGIPCELRVTS IKKACGNFGIPCELRVTSAHKGPDETLRIK K A C L R V 1 1 1 0 2 0 1 2 0 1 1 0 0 1 1 0 0 0 0 0 0 0 12 0 1392.6278 D6RF62;E9PBS1;A0A024RD93;P22234 D6RF62 195 206 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 2 0.0094915 43.308 1 0.4347 0.60155 NaN 1 Median 0.4347 0.60155 NaN 1 0 Median NaN NaN NaN 0 0 Median 4022900 2806800 1216100 4022900 2806800 1216100 0 0 0 135 313 136 442 666;667 666 2 ACGVLETIR FPFTFDEKRAVQQLRACGVLETIRISAAGF AVQQLRACGVLETIRISAAGFPSRWTYQEF R A C I R I 1 1 0 0 1 0 1 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 9 0 1017.5277 A8CDT9;A0A087WY00;G3V394;F8WE88;F8W6H6;Q9Y4I1;B4E147;Q59FF5;Q9NQX4;Q9ULV0;A0A024R269 A8CDT9 683 691 MYO5A;MYO5C;MYO5B;ACAA2 Unconventional myosin-Va;Unconventional myosin-Vc;Unconventional myosin-Vb yes no 2 0.024281 50.04 2 0.83379 1.1228 NaN 1 Median 0.83379 1.1228 NaN 1 0 Median NaN NaN NaN 0 0 Median 5714200 3139800 2574400 5714200 3139800 2574400 0 0 0 136 361 137 443;444 668;669 669 2 ACGVSRPVIACSVTIK NVPYVFVRSKQALGRACGVSRPVIACSVTI CGVSRPVIACSVTIKEGSQLKQQIQSIQQS R A C I K E 2 1 0 0 2 0 0 1 0 2 0 1 0 0 1 2 1 0 0 3 0 0 16 1 1716.9015 Q6FHM6;B1AHD1;P55769 Q6FHM6 92 107 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes no 2;3 2.4175E-59 190.34 8 2 0.66996 0.88777 23.698 10 Median 0.68647 0.91037 6.3258 8 0 Median 0.30954 0.53187 6.1937 2 0 Median 879290000 526620000 352670000 797630000 466050000 331580000 81663000 60571000 21092000 137 670 138 445;446;447;448;449;450;451;452;453;454 670;671;672;673;674;675;676;677;678;679;680;681;682;683;684;685 676 16 ACILCVHPR DPKKAGTYFSNQAVRACILCVHPRTRVVHL SNQAVRACILCVHPRTRVVHLSLRPIFLQP R A C P R T 1 1 0 0 2 0 0 0 1 1 1 0 0 0 1 0 0 0 0 1 0 0 9 0 1124.5583 Q14690;B4DH82;B4DES7 Q14690 329 337 PDCD11 Protein RRP5 homolog yes no 3 0.0074379 73.665 3 1.2718 1.7082 18.314 3 Plateau 1.2718 1.7082 18.314 3 0 Plateau NaN NaN NaN 0 0 Median 53055000 26581000 26474000 53055000 26581000 26474000 0 0 0 138 1494 139 455;456;457 686;687;688;689 686 4 ACIPVGLLGK AITAMGFKQPTPIQKACIPVGLLGKDICAC TPIQKACIPVGLLGKDICACAATGTGKTAA K A C G K D 1 0 0 0 1 0 0 2 0 1 2 1 0 0 1 0 0 0 0 1 0 0 10 0 1026.5896 B7Z6D5;B3GQE6;Q96GQ7;A0A087X059 B7Z6D5 216 225 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 0.0080835 55.676 2 0.91656 1.1652 14.164 2 Median 0.91656 1.1652 14.164 2 0 Median NaN NaN NaN 0 0 Median 26194000 12686000 13508000 26194000 12686000 13508000 0 0 0 139 750 140 458;459 690;691;692 691 3 ACISFNKK VLNQSPNNIPALLGKACISFNKKDYRGALA IPALLGKACISFNKKDYRGALAYYKKALRT K A C K K D 1 0 1 0 1 0 0 0 0 1 0 2 0 1 0 1 0 0 0 0 0 0 8 1 966.49569 A8K6X9;Q6PD62;H0YCE8 A8K6X9 170 177 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2 0.0085248 106.42 1 0.77127 0.94255 NaN 1 Median 0.77127 0.94255 NaN 1 0 Median NaN NaN NaN 0 0 Median 4394400 2166100 2228300 4394400 2166100 2228300 0 0 0 140 629 141 460 693 693 1 ACLIFFDEIDAIGGAR ARMVRELFEMARTKKACLIFFDEIDAIGGA CLIFFDEIDAIGGARFDDGAGGDNEVQRTM K A C A R F 3 1 0 2 1 0 1 2 0 3 1 0 0 2 0 0 0 0 0 0 0 0 16 0 1766.8662 A0A140VK70;P35998;Q75L23 A0A140VK70 269 284 PSMC2 26S protease regulatory subunit 7 yes no 2 5.2525E-07 120.96 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3334300 3334300 0 3334300 3334300 0 0 0 0 141 510 142 461;462 694;695 694 2 ACLISLGYDVENDRQGEAEFNR FDKDHGGALGPEEFKACLISLGYDVENDRQ YDVENDRQGEAEFNRIMSLVDPNHSGLVTF K A C N R I 2 2 2 2 1 1 3 2 0 1 2 0 0 1 0 1 0 0 1 1 0 0 22 1 2555.1711 A0A0S2Z3G9;O43707;Q96BG6;F5GXS2;A0A0S2Z3X3 A0A0S2Z3G9 792 813 ACTN4 Alpha-actinin-4 yes no 3 6.0791E-05 76.378 4 0.90656 1.2031 16.038 4 Median 0.90656 1.2031 16.038 4 0 Median NaN NaN NaN 0 0 Median 43439000 19564000 23875000 43439000 19564000 23875000 0 0 0 142 451 143 463;464;465;466 696;697;698;699 696 4 ACPQIVTALTLLNR LNCPLSGEKASLLWRACPQIVTALTLLNRE RACPQIVTALTLLNREASQEQPVSLTVVGP R A C N R E 2 1 1 0 1 1 0 0 0 1 3 0 0 0 1 0 2 0 0 1 0 0 14 0 1568.8708 A8K4P8;Q14146 A8K4P8 1293 1306 URB2 Unhealthy ribosome biogenesis protein 2 homolog yes no 2 0.00010533 77.062 2 0.27183 0.3725 NaN 1 Median 0.27183 0.3725 NaN 1 0 Median NaN NaN NaN 0 0 Median 2825000 2440200 384780 2825000 2440200 384780 0 0 0 143 606 144 467;468 700;701 701 2 ACQIFVR SFGGAGGHAPGVARKACQIFVRNLPFDFTW HAPGVARKACQIFVRNLPFDFTWKMLKDKF K A C V R N 1 1 0 0 1 1 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 7 0 892.45891 P52272;A0A087X0X3;Q59ES8;Q7KYM9;Q6P2D7;M0R2I7;M0QY96 P52272 652 658 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M yes no 2 0.020689 75.915 1 0.3199 0.44381 NaN 1 Median 0.3199 0.44381 NaN 1 0 Median NaN NaN NaN 0 0 Median 57389000 42386000 15003000 57389000 42386000 15003000 0 0 0 144 1363 145 469 702 702 1 ACQSIYPLHDVFVR VNKLIPDSIGKDIEKACQSIYPLHDVFVRK KACQSIYPLHDVFVRKVKMLKKPKFELGKL K A C V R K 1 1 0 1 1 1 0 0 1 1 1 0 0 1 1 1 0 0 1 2 0 0 14 0 1703.8454 Q6NXR8;P61247;A8K4W0;D6RG13;D6RAT0;H0Y9Y4;D6RB09;D6R9B6 Q6NXR8 200 213 RPS3A 40S ribosomal protein S3a yes no 2;3 1.1538E-09 135.6 8 3 0.7154 0.97188 11.696 11 Median 0.72212 0.99013 5.7544 8 0 Median 0.51027 0.79177 5.4237 3 0 Median 725570000 429120000 296450000 655020000 383140000 271880000 70543000 45976000 24567000 145 1393 146 470;471;472;473;474;475;476;477;478;479;480 703;704;705;706;707;708;709;710;711;712;713;714;715;716 708 13 ACQSIYPLHDVFVRK VNKLIPDSIGKDIEKACQSIYPLHDVFVRK ACQSIYPLHDVFVRKVKMLKKPKFELGKLM K A C R K V 1 1 0 1 1 1 0 0 1 1 1 1 0 1 1 1 0 0 1 2 0 0 15 1 1831.9403 Q6NXR8;P61247;A8K4W0;D6RG13;D6RAT0;H0Y9Y4;D6RB09;D6R9B6 Q6NXR8 200 214 RPS3A 40S ribosomal protein S3a yes no 3;4 0.0050946 69.258 4 0.90821 1.1968 7.1212 2 Median 0.90821 1.1968 7.1212 2 0 Median NaN NaN NaN 0 0 Median 51226000 29245000 21981000 51226000 29245000 21981000 0 0 0 146 1393 147 481;482;483;484 717;718;719;720;721 718 5 ACTQLVDNLVEHILK LLKSEEDSSYKPVKKACTQLVDNLVEHILK ACTQLVDNLVEHILKYEESLADSDNKGVNS K A C L K Y 1 0 1 1 1 1 1 0 1 1 3 1 0 0 0 0 1 0 0 2 0 0 15 0 1751.924 Q6IEH8;Q6KC79 Q6IEH8 1970 1984 NIPBL Nipped-B-like protein yes no 3 0.0028841 33.787 1 0.38711 0.49919 NaN 1 Median 0.38711 0.49919 NaN 1 0 Median NaN NaN NaN 0 0 Median 4626100 2908000 1718100 4626100 2908000 1718100 0 0 0 147 1586 148 485 722 722 1 ACVCQTLGISPEEK RPLQVGERSDYAGFRACVCQTLGISPEEKF RACVCQTLGISPEEKFVITTTSRKEITCDN R A C E K F 1 0 0 0 2 1 2 1 0 1 1 1 0 0 1 1 1 0 0 1 0 0 14 0 1590.7382 A6NHR9 A6NHR9 58 71 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.00014148 79.82 3 0.75699 0.9804 8.6586 2 Median 0.75699 0.9804 8.6586 2 0 Median NaN NaN NaN 0 0 Median 6511300 3674400 2836900 6511300 3674400 2836900 0 0 0 148 568 149 486;487;488 723;724;725 724 3 ACVQGECGVCHYCR VSGARRRRVRCRKCKACVQGECGVCHYCRD KACVQGECGVCHYCRDMKKFGGPGRMKQSC K A C C R D 1 1 0 0 4 1 1 2 1 0 0 0 0 0 0 0 0 0 1 2 0 0 14 0 1754.6745 I3VM54;I3VM53;Q9Y2K7;B4DSG1 I3VM54 559 572 KDM2A Lysine-specific demethylase 2A yes no 3 0.00071436 85.271 2 0.3142 0.42907 45.234 2 Median 0.3142 0.42907 45.234 2 0 Median NaN NaN NaN 0 0 Median 6365000 4489500 1875500 6365000 4489500 1875500 0 0 0 149 1128 150 489;490 726;727 727 2 ACYGVLR ESLRYKLLGGLAVRRACYGVLRFIMESGAK LGGLAVRRACYGVLRFIMESGAKGCEVVVS R A C L R F 1 1 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 7 0 837.41671 P23396;Q53G83;E9PL09;H0YEU2;A7E2S3;Q9NQS8 P23396 118 124 RPS3 40S ribosomal protein S3 yes no 2 0.021386 84.025 3 0.70187 0.94944 2.2162 2 Median 0.70187 0.94944 2.2162 2 0 Median NaN NaN NaN 0 0 Median 80411000 44434000 35978000 80411000 44434000 35978000 0 0 0 150 1293 151 491;492;493 728;729;730;731 730 4 ADAEVIILPK ______________________________ ______________________________ M A D P K K 2 0 0 1 0 0 1 0 0 2 1 1 0 0 1 0 0 0 0 1 0 0 10 0 1067.6227 O60832;C9IYT0;U5UA77;U5U7S7;U5U768 O60832 2 11 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 1;2 1.5986E-07 151.44 8 1 0.73813 0.93761 14.85 8 Median 0.74446 0.92846 16.04 7 0 Median 0.60205 0.94685 NaN 1 0 Median 97261000 59591000 37670000 58661000 34800000 23861000 38600000 24791000 13809000 151 1193 152 494;495;496;497;498;499;500;501;502 732;733;734;735;736;737;738;739;740;741;742 735 11 ADALQLSVEEFVER SFSLSPAAVADNVERADALQLSVEEFVERY RADALQLSVEEFVERYERPYKPVVLLNAQE R A D E R Y 2 1 0 1 0 1 3 0 0 0 2 0 0 1 0 1 0 0 0 2 0 0 14 0 1604.8046 B2WTI3;B2WTI4;K7EJU9;A0A0S2PZM4;Q6NYC1 B2WTI3 49 62 JMJD6 Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 yes no 2 1.0168E-09 147.71 1 0.43115 0.61323 NaN 1 Median 0.43115 0.61323 NaN 1 0 Median NaN NaN NaN 0 0 Median 1691000 1203100 487870 1691000 1203100 487870 0 0 0 152 446 153 503 743 743 1 ADAQLLLHNTVIFYGADSEQADIAR EKVNEGKYRSYEEFKADAQLLLHNTVIFYG VIFYGADSEQADIARMLYKDTCHELDELQL K A D A R M 5 1 1 3 0 2 1 1 1 2 3 0 0 1 0 1 1 0 1 1 0 0 25 0 2730.3613 Q5BJG6;B7Z3W2;J3QKD2;Q15326;Q6PJR5;A0A0A0MRY2;B0QZE2;E7ENI9 Q5BJG6 124 148 ZMYND11 Zinc finger MYND domain-containing protein 11 yes no 3 1.8676E-20 110.68 4 2 1.0815 1.4549 8.4464 5 Median 1.2111 1.4733 5.9407 3 0 Plateau 0.91052 1.326 1.4173 2 0 Median 65104000 33306000 31798000 35357000 17254000 18103000 29747000 16052000 13695000 153 906 154 504;505;506;507;508;509 744;745;746;747;748;749;750;751;752;753;754 749 11 ADARQEEDSYEIFICHANVIR DGARIEAAFRNYIHRADARQEEDSYEIFIC EDSYEIFICHANVIRYIVCRALQFPPEGWL R A D I R Y 3 2 1 2 1 1 3 0 1 3 0 0 0 1 0 1 0 0 1 1 0 0 21 1 2535.1812 Q96HS1;F5GXG4 Q96HS1 215 235 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 3 0.00070398 81.316 3 0.54061 0.73281 41.277 2 Median 0.54061 0.73281 41.277 2 0 Median NaN NaN NaN 0 0 Median 20533000 12540000 7992300 20533000 12540000 7992300 0 0 0 154 1688 155 510;511;512 755;756;757;758 755 4 ADAVQDSEMVELVELEIR ARQIGVEHVVVYVNKADAVQDSEMVELVEL VQDSEMVELVELEIRELLTEFGYKGEETPV K A D I R E 2 1 0 2 0 1 4 0 0 1 2 0 1 0 0 1 0 0 0 3 0 0 18 0 2044.9987 P49411 P49411 183 200 TUFM Elongation factor Tu, mitochondrial yes yes 2 9.8028E-18 159.41 3 0.394 0.55591 NaN 1 Median 0.394 0.55591 NaN 1 0 Median NaN NaN NaN 0 0 Median 9928600 9108000 820560 9928600 9108000 820560 0 0 0 155 1350 156 513;514;515 759;760;761 759 3 ADCILYYGFGDIFR NYYQESGRAGRDDMKADCILYYGFGDIFRI KADCILYYGFGDIFRISSMVVMENVGQQKL K A D F R I 1 1 0 2 1 0 0 2 0 2 1 0 0 2 0 0 0 0 2 0 0 0 14 0 1708.7919 A0A024RAV2;P46063 A0A024RAV2 412 425 RECQL ATP-dependent DNA helicase Q1 yes no 2 0.0092287 53.967 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2254300 2254300 0 2254300 2254300 0 0 0 0 156 250 157 516;517 762;763 762 2 ADDADEFGYSR AKSARLNLWRYGDFRADDADEFGYSR____ GDFRADDADEFGYSR_______________ R A D S R - 2 1 0 3 0 0 1 1 0 0 0 0 0 1 0 1 0 0 1 0 0 0 11 0 1244.4946 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B4E299;B3KU67 A0A140VK49 900 910 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.0085305 102.06 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 157 508 158 518 764 764 1 ADDLLPLGDQTQDGDFGSR RVKKIRKKEKEVVVRADDLLPLGDQTQDGD LPLGDQTQDGDFGSRLRGRGRRRVSEVEEE R A D S R L 1 1 0 5 0 2 0 3 0 0 3 0 0 1 1 1 1 0 0 0 0 0 19 0 2018.9181 O43290;B4DP43;B4DDH9 O43290 420 438 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes no 2 0.046684 45.33 1 0.84485 1.1592 NaN 1 Median 0.84485 1.1592 NaN 1 0 Median NaN NaN NaN 0 0 Median 1160000 616040 544000 1160000 616040 544000 0 0 0 158 1184 159 519 765 765 1 ADDPLRLDQELQQPQTQEK PVEQDSSQPSLPLVRADDPLRLDQELQQPQ LRLDQELQQPQTQEKTSNSLTEDSKMANAK R A D E K T 1 1 0 3 0 5 2 0 0 0 3 1 0 0 2 0 1 0 0 0 0 0 19 1 2251.1081 A6NNK5;Q12888;B7Z3E7;H7C3N7;C9JXV0;A8KA50 A6NNK5 845 863 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 3 0.0037925 55.907 2 0.85973 1.1292 19.785 2 Median 0.85973 1.1292 19.785 2 0 Median NaN NaN NaN 0 0 Median 7305700 3508800 3796800 7305700 3508800 3796800 0 0 0 159 572 160 520;521 766;767;768 766 3 ADDPYAHLSK EGEGEEEEEEGGESKADDPYAHLSKKEKKK GGESKADDPYAHLSKKEKKKLKKQMEYERQ K A D S K K 2 0 0 2 0 0 0 0 1 0 1 1 0 0 1 1 0 0 1 0 0 0 10 0 1115.5247 Q8NE71;B4DNU2;Q5STZ8 Q8NE71 246 255 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 0.0016936 64.04 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 160 1653 161 522 769 769 1 ADEASELACPTPK VRQLTLRKLQELSSKADEASELACPTPKED SKADEASELACPTPKEDGLAQQQTQLNLRS K A D P K E 3 0 0 1 1 0 2 0 0 0 1 1 0 0 2 1 1 0 0 0 0 0 13 0 1387.6289 A0A0U1RQF0;P49327 A0A0U1RQF0 2192 2204 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 1.1928E-12 126.71 5 0.69439 0.88898 25.438 2 Median 0.69439 0.88898 25.438 2 0 Median NaN NaN NaN 0 0 Median 19960000 9571100 10389000 19960000 9571100 10389000 0 0 0 161 486 162 523;524;525;526;527 770;771;772;773;774;775;776 776 7 ADEGISFR SDPKRTIAQDYGVLKADEGISFRGLFIIDD QDYGVLKADEGISFRGLFIIDDKGILRQIT K A D F R G 1 1 0 1 0 0 1 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 8 0 893.4243 A0A0A0MSI0;Q06830;B2R4P2 A0A0A0MSI0 121 128 PRDX1 Peroxiredoxin-1 yes no 2 0.0077352 79.809 2 2 0.63364 0.84425 86.689 3 Median 0.62153 0.84335 0.1503 2 0 Median 2.6155 3.7853 NaN 1 0 Median 92694000 44694000 48000000 72517000 41254000 31263000 20178000 3440100 16738000 162 397 163 528;529;530;531 777;778;779;780;781 778 5 ADEHVIDQGDDGDNFYVIER QLSQVLDAMFERIVKADEHVIDQGDDGDNF IDQGDDGDNFYVIERGTYDILVTKDNQTRS K A D E R G 1 1 1 5 0 1 2 2 1 2 0 0 0 1 0 0 0 0 1 2 0 0 20 0 2306.0087 A0A0S2Z472;A8KAH7;A0A024R2W3;P13861;H7C1L0 A0A0S2Z472 162 181 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 3 0.011349 60.621 2 0.49759 0.70482 NaN 1 Median 0.49759 0.70482 NaN 1 0 Median NaN NaN NaN 0 0 Median 3128200 2533300 594970 3128200 2533300 594970 0 0 0 163 94 164 532;533 782;783 783 2 ADELFTEYESK LRPARLPLNCCVFCKADELFTEYESKLFSN VFCKADELFTEYESKLFSNTVKGQTAIFEE K A D S K L 1 0 0 1 0 0 3 0 0 0 1 1 0 1 0 1 1 0 1 0 0 0 11 0 1330.5929 A0A0D9SFM0;Q149N8;B3KX98 A0A0D9SFM0 1250 1260 SHPRH E3 ubiquitin-protein ligase SHPRH yes no 2 0.014256 44.309 1 1.1939 1.5282 NaN 1 Median 1.1939 1.5282 NaN 1 0 Median NaN NaN NaN 0 0 Median 3677600 1472500 2205100 3677600 1472500 2205100 0 0 0 164 436 165 534 784 784 1 ADFAQACQDAGVR NVDAVHPGYGFLSERADFAQACQDAGVRFI ERADFAQACQDAGVRFIGPSPEVVRKMGDK R A D V R F 4 1 0 2 1 2 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 13 0 1407.6201 A0A024R5C5;P11498;E9PRE7 A0A024R5C5 125 137 PC Pyruvate carboxylase;Pyruvate carboxylase, mitochondrial yes no 2 0.0018862 113.47 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6687500 6687500 0 6687500 6687500 0 0 0 0 165 139 166 535;536 785;786 785 2 ADFCIIHYAGK GTHPKFQKPKQLKDKADFCIIHYAGKVDYK LKDKADFCIIHYAGKVDYKADEWLMKNMDP K A D G K V 2 0 0 1 1 0 0 1 1 2 0 1 0 1 0 0 0 0 1 0 0 0 11 0 1293.6176 A0A024R1N1;P35579;Q86XU5;B4E3S1;A0A0U4BW16;P35580 A0A024R1N1 566 576 MYH9;MYH10 Myosin-9;Myosin-10 no no 2;3 2.9505E-06 125.48 6 0.99301 1.2507 2.4761 6 Median 0.99301 1.2507 2.4761 6 0 Median NaN NaN NaN 0 0 Median 258190000 132170000 126020000 258190000 132170000 126020000 0 0 0 166 61;490;1320 167 537;538;539;540;541;542 787;788;789;790;791;792;793;794;795;796;797;798 797 12 ADFDDRVSDEEK ______________________________ ______________________________ M A D E K V 1 1 0 4 0 0 2 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 12 1 1424.6056 A8K0T9;A0A024R0E5;P52907 A8K0T9 2 13 CAPZA1 F-actin-capping protein subunit alpha-1 yes no 2 2.1112E-15 167.84 4 0.8502 1.108 13.486 4 Linear 0.8502 1.108 13.486 4 0 Linear NaN NaN NaN 0 0 Median 56384000 27645000 28740000 56384000 27645000 28740000 0 0 0 167 32 168 543;544;545;546 799;800;801;802;803;804;805 800 7 ADFPAGIPECGTDALR NLDPSEVEKAKEGQKADFPAGIPECGTDAL DFPAGIPECGTDALRFGLCAYMSQGRDINL K A D L R F 3 1 0 2 1 0 1 2 0 1 1 0 0 1 2 0 1 0 0 0 0 0 16 0 1688.7828 A0A024RCN6;P26640;A0A140T936;B4DT32;H0Y426 A0A024RCN6 908 923 VARS Valine--tRNA ligase yes no 2 0.023078 36.982 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4855700 4855700 0 4855700 4855700 0 0 0 0 168 297 169 547 806 806 1 ADFTVVAGDEGSSTTGGSSEENK NLPQLKELYQLSKEKADFTVVAGDEGSSTT DEGSSTTGGSSEENKGPSGSAVSRKAPSKP K A D N K G 2 0 1 2 0 0 3 4 0 0 0 1 0 1 0 4 3 0 0 2 0 0 23 0 2243.9666 P49916;B7Z6I3 P49916 836 858 LIG3 DNA ligase 3;DNA ligase yes no 2 5.53E-27 151.73 3 2 1.0332 1.4622 36.84 4 Median 0.77256 0.99582 42.792 2 0 Median 1.0659 1.5984 1.0573 2 0 Median 25489000 12790000 12700000 5145500 3137400 2008000 20344000 9652400 10692000 169 1356 170 548;549;550;551;552 807;808;809;810;811;812;813 807 7 ADFVCSTVQKPDAANYYYLIILK SKGSVTLSEIRLPLKADFVCSTVQKPDAAN QKPDAANYYYLIILKAGAENMVATPLASTS K A D L K A 3 0 1 2 1 1 0 0 0 2 2 2 0 1 1 1 1 0 3 2 0 0 23 1 2691.3618 B4DSL6;A8K5D9;A0A024RA49;Q9NQW6;H7C1K5;H7C1C2 B4DSL6 692 714 ANLN Actin-binding protein anillin yes no 3 0.0042128 27.61 1 0.61366 0.75119 NaN 1 Median 0.61366 0.75119 NaN 1 0 Median NaN NaN NaN 0 0 Median 4015300 2522600 1492600 4015300 2522600 1492600 0 0 0 170 235 171 553 814 814 1 ADFVLAANSYDLAIK LANRKRECGNAHYQRADFVLAANSYDLAIK ADFVLAANSYDLAIKAITSSAKVDMTFEEE R A D I K A 4 0 1 2 0 0 0 0 0 1 2 1 0 1 0 1 0 0 1 1 0 0 15 0 1609.8352 B2R8G6;A0A024R7P2;B7Z6M0;Q14318;U3KQ64;M0R2K9 B2R8G6 179 193 FKBP8 Peptidyl-prolyl cis-trans isomerase FKBP8;Peptidyl-prolyl cis-trans isomerase yes no 2 4.9962E-08 94.767 1 0.30758 0.38237 NaN 1 Median 0.30758 0.38237 NaN 1 0 Median NaN NaN NaN 0 0 Median 8222200 6062000 2160300 8222200 6062000 2160300 0 0 0 171 182 172 554 815;816 815 2 ADGELNVDSLITR ______________________________ ______________________________ M A D T R L 1 1 1 2 0 0 1 1 0 1 2 0 0 0 0 1 1 0 0 1 0 0 13 0 1401.71 V9HW04;P62140;C9J9S3;C9JP48 V9HW04 2 14 HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes no 2 0.0001012 116.74 4 0.80266 1.0613 NaN 1 Median 0.80266 1.0613 NaN 1 0 Median NaN NaN NaN 0 0 Median 17071000 5043500 12027000 17071000 5043500 12027000 0 0 0 172 1397 173 555;556;557;558 817;818;819;820 818 4 ADGTSLDFSTYR SRTPSSCSSSLDSIKADGTSLDFSTYRSSQ SIKADGTSLDFSTYRSSQMESQFLRDTICE K A D Y R S 1 1 0 2 0 0 0 1 0 0 1 0 0 1 0 2 2 0 1 0 0 0 12 0 1331.5994 Q8NG31;H0YCZ2;H0YEY7 Q8NG31 1856 1867 CASC5 Protein CASC5 yes no 2 0.0060056 49.5 1 2 0.46654 0.62188 9.358 3 Plateau 0.46654 0.62188 NaN 1 0 Median 0.41495 0.53847 6.0722 2 0 Median 15751000 10592000 5158800 7176800 4725800 2451000 8573800 5866000 2707800 173 1656 174 559;560;561 821;822;823 821 2 ADGYVLEGK KLLACIASRPGQCGRADGYVLEGKELEFYL PGQCGRADGYVLEGKELEFYLRKIKARKGK R A D G K E 1 0 0 1 0 0 1 2 0 0 1 1 0 0 0 0 0 0 1 1 0 0 9 0 950.47091 Q5JR94;P62241;Q5JR95;Q9BS10 Q5JR94 185 193 RPS8 40S ribosomal protein S8 yes no 1;2 0.0021686 101.46 5 3 0.81931 1.0697 46.248 8 Median 0.89251 1.1796 11.321 5 0 Median 0.29637 0.47453 10.321 3 0 Median 2469400000 1423700000 1045700000 1972700000 1036100000 936530000 496690000 387530000 109160000 174 1399 175 562;563;564;565;566;567;568;569 824;825;826;827;828;829;830;831;832;833;834;835;836;837;838;839 836 16 ADHQPLTEASYVNLPTIALCNTDSPLR AAFREPRLLVVTDPRADHQPLTEASYVNLP NLPTIALCNTDSPLRYVDIAIPCNNKGAHS R A D L R Y 3 1 2 2 1 1 1 0 1 1 4 0 0 0 3 2 3 0 1 1 0 0 27 0 2995.4709 C9J9K3;A0A024R2P0;A0A0C4DG17;P08865;A0A024R7P5 C9J9K3 129 155 RPSA;LOC388524 40S ribosomal protein SA yes no 3 2.1528E-29 137.85 4 2 0.83324 1.1502 69.082 6 Median 0.81336 1.1213 3.2809 4 0 Median 2.7008 4.2555 7.4992 2 0 Median 974000000 508800000 465190000 912990000 491990000 421000000 61010000 16816000 44194000 175 90 176 570;571;572;573;574;575 840;841;842;843;844;845;846;847;848;849;850;851;852 845 13 ADHSFSDGVPSDSVEAAK ______________________________ SFSDGVPSDSVEAAKNASNTEKLTDQVMQN M A D A K N 3 0 0 3 0 0 1 1 1 0 0 1 0 1 1 4 0 0 0 2 0 0 18 0 1817.8068 E9PNW0;E9PJJ2;E9PS34;E9PNJ7;C9J6D1;A0A024RCC9;B7ZAK9;B7ZB83;B4DS05;Q99733;E9PKT8;C9JZI7;B7ZAC7;E9PKI2;E9PP22;C9J1B1 E9PNW0 2 19 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 2 5.998E-10 127.79 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3752200 0 3752200 0 0 0 3752200 0 3752200 176 293 177 576;577;578 853;854;855 853 3 ADIDLTK IKGVGRRYAHVVLRKADIDLTKRAGELTED YAHVVLRKADIDLTKRAGELTEDEVERVIT K A D T K R 1 0 0 2 0 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 7 0 774.41233 P62269 P62269 48 54 RPS18 40S ribosomal protein S18 yes yes 2 0.031009 62.659 1 0.8093 1.0225 NaN 1 Median 0.8093 1.0225 NaN 1 0 Median NaN NaN NaN 0 0 Median 14298000 7912100 6385700 14298000 7912100 6385700 0 0 0 177 1402 178 579 856 856 1 ADILEMAVSYLK EQEFARHQPNSKLEKADILEMAVSYLKHSK LEKADILEMAVSYLKHSKGERARAPRAPSS K A D L K H 2 0 0 1 0 0 1 0 0 1 2 1 1 0 0 1 0 0 1 1 0 0 12 0 1351.7057 Q5M8T3;Q5TA89 Q5M8T3 33 44 HES5 Transcription factor HES-5 yes no 2 0.013015 68.626 3 1.1421 1.4693 27.376 3 Median 1.1421 1.4693 27.376 3 0 Median NaN NaN NaN 0 0 Median 84162000 46223000 37939000 84162000 46223000 37939000 0 0 0 178 1560 179 580;581;582 857;858;859;860 858 710 4 ADLEMQIESLK INGLRRVLDELTLARADLEMQIESLKEELA TLARADLEMQIESLKEELAYLKKNHEEEMN R A D L K E 1 0 0 1 0 1 2 0 0 1 2 1 1 0 0 1 0 0 0 0 0 0 11 0 1275.6381 CON__P02533;P02533;A0A024R1X6 CON__P02533 233 243 KRT14 Keratin, type I cytoskeletal 14 no no 2 0.0035094 73.887 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25851000 25851000 0 0 0 0 25851000 25851000 0 + 179 949 180 583;584;585 861;862;863 862 324 3 ADLEMQIESLTEELAYLKK INGLRRVLDELTLTKADLEMQIESLTEELA MQIESLTEELAYLKKNHEEEMKDLRNVSTG K A D K K N 2 0 0 1 0 1 4 0 0 1 4 2 1 0 0 1 1 0 1 0 0 0 19 1 2223.1345 CON__P13645;P13645 CON__P13645 267 285 KRT10 Keratin, type I cytoskeletal 10 yes no 3 2.1469E-11 130.01 6 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27371000 27371000 0 27371000 27371000 0 0 0 0 + 180 960 181;182 586;587;588;589;590;591 864;865;866;867;868;869;870 867 336 7 ADLESLLQTPGGK RKKLNHLLKALETSKADLESLLQTPGGKPR SKADLESLLQTPGGKPRGFSEAAAPRAFGL K A D G K P 1 0 0 1 0 1 1 2 0 0 3 1 0 0 1 1 1 0 0 0 0 0 13 0 1327.6983 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 797 809 NCAPG2 Condensin-2 complex subunit G2 yes no 2 0.0045259 46.524 1 0.98326 1.2024 NaN 1 Median 0.98326 1.2024 NaN 1 0 Median NaN NaN NaN 0 0 Median 22126000 8677000 13449000 22126000 8677000 13449000 0 0 0 181 1621 183 592 871;872 872 2 ADLESLLQTPGGKPR RKKLNHLLKALETSKADLESLLQTPGGKPR ADLESLLQTPGGKPRGFSEAAAPRAFGLHC K A D P R G 1 1 0 1 0 1 1 2 0 0 3 1 0 0 2 1 1 0 0 0 0 0 15 1 1580.8522 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 797 811 NCAPG2 Condensin-2 complex subunit G2 yes no 2;3 7.3158E-07 101.89 7 2 0.70384 0.91909 10.48 9 Median 0.70917 0.95191 8.4506 7 0 Median 0.49538 0.79939 2.1996 2 0 Median 175420000 106760000 68660000 138270000 83116000 55158000 37146000 23644000 13502000 182 1621 184 593;594;595;596;597;598;599;600;601 873;874;875;876;877;878;879;880;881;882;883;884 884 12 ADLINNLGTIAK ERTLTLVDTGIGMTKADLINNLGTIAKSGT MTKADLINNLGTIAKSGTKAFMEALQAGAD K A D A K S 2 0 2 1 0 0 0 1 0 2 2 1 0 0 0 0 1 0 0 0 0 0 12 0 1241.698 A0A024RD80;P08238;B4DMA2;B4DGL0;Q6PK50;O14942;Q58FF8;K9JA46;P07900;Q2VPJ6;Q8TBA7;B4DTA5;Q86SX1;Q14568 A0A024RD80 96 107 HSP90AB1;HSP90AB2P;EL52;HSP90AA1;HSP90AA2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 no no 2 8.6931E-08 104.82 1 2 4.409 6.9269 147.52 3 Median 0.42543 0.55716 NaN 1 0 Median 4.5118 7.1675 4.8305 2 0 Median 245220000 107160000 138060000 117640000 82125000 35513000 127580000 25034000 102550000 183 312;1155;1551 185 602;603;604 885;886;887;888;889 888 5 ADLIPYQDSPEGPDHSSASSGVPNPPK INVKRPVERRFPIYKADLIPYQDSPEGPDH PDHSSASSGVPNPPKARTYTETVNHHYLLF K A D P K A 2 0 1 3 0 1 1 2 1 1 1 1 0 0 6 5 0 0 1 1 0 0 27 0 2761.2831 Q8WUA4;Q53SY8;H0Y4Q6;H7C318 Q8WUA4 757 783 GTF3C2 General transcription factor 3C polypeptide 2 yes no 3 0.00061635 51.857 4 0.66901 0.84694 6.8233 4 Median 0.66901 0.84694 6.8233 4 0 Median NaN NaN NaN 0 0 Median 27263000 16758000 10504000 27263000 16758000 10504000 0 0 0 184 1663 186 605;606;607;608 890;891;892;893;894 890 5 ADLLLSTQPGREEGSPLELER LQASDLPASASLPAKADLLLSTQPGREEGS TQPGREEGSPLELERLKLEPHEGLLLRFPY K A D E R L 1 2 0 1 0 1 4 2 0 0 5 0 0 0 2 2 1 0 0 0 0 0 21 1 2309.1863 B4E2Z3;F5GZS6;J3KPF3;P08195;F5GZI0 B4E2Z3 474 494 SLC3A2 4F2 cell-surface antigen heavy chain yes no 3 2.3248E-05 59.502 3 2 1.2752 1.7741 118.98 5 Median 0.89896 1.2224 32.496 3 0 Median 7.1405 10.632 6.6839 2 0 Median 43806000 11448000 32358000 13030000 7062500 5967200 30776000 4385300 26391000 185 889 187 609;610;611;612;613 895;896;897;898;899 898 5 ADLLQREEEEEEEEDQEGDRETTIR TPPEGLRLKPPAGWKADLLQREEEEEEEED EEEEDQEGDRETTIRGKATPAEEEKTGKVK K A D I R G 1 3 0 3 0 2 10 1 0 1 2 0 0 0 0 0 2 0 0 0 0 0 25 2 3047.3439 Q15269;A0A0B4J2E5 Q15269 234 258 PWP2 Periodic tryptophan protein 2 homolog yes no 3;4 4.632E-14 95.122 7 3 0.74921 0.88733 18.553 10 Median 0.76281 0.92313 13.5 7 0 Median 0.64199 0.75204 11.986 3 0 Median 703810000 415900000 287910000 411740000 235280000 176460000 292070000 180620000 111450000 186 1508 188 614;615;616;617;618;619;620;621;622;623 900;901;902;903;904;905;906;907;908;909;910;911;912;913;914;915;916;917 917 18 ADLPEGVAVSGPSPAEFCR HYMDGQTPCLFVSSKADLPEGVAVSGPSPA EGVAVSGPSPAEFCRKHRLPAPVPFSCAGP K A D C R K 3 1 0 1 1 0 2 2 0 0 1 0 0 1 3 2 0 0 0 2 0 0 19 0 1957.9204 Q8IXI1;H3BU27 Q8IXI1 526 544 RHOT2 Mitochondrial Rho GTPase 2 yes no 2 0.017605 67.648 1 0.50879 0.72144 NaN 1 Median 0.50879 0.72144 NaN 1 0 Median NaN NaN NaN 0 0 Median 1548800 882350 666420 1548800 882350 666420 0 0 0 187 1626 189 624 918 918 0 ADLSLADALTEPSPDIEGEIKR ______________________________ ALTEPSPDIEGEIKRDFIATLEAEAFDDVV M A D K R D 3 1 0 3 0 0 3 1 0 2 3 1 0 0 2 2 1 0 0 0 0 0 22 1 2339.1856 E7EVA0;P27816;B4DM10;Q6NX68;A0A024R2V2;A0A024R2S1;Q05D06;A0A0J9YVV8;A0A0J9YW37;H7C456 E7EVA0 2 23 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 3.1214E-08 106.52 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 740320 740320 0 740320 740320 0 0 0 0 188 1017 190 625 919 919 1 ADLTALFLPR SGKVKRDAEKKDQMKADLTALFLPRQPPMS KDQMKADLTALFLPRQPPMSLAEAEQLMEE K A D P R Q 2 1 0 1 0 0 0 0 0 0 3 0 0 1 1 0 1 0 0 0 0 0 10 0 1115.6339 B4DIX0;Q13045;Q59H95 B4DIX0 844 853 FLII Protein flightless-1 homolog yes no 2 1.2943E-06 141.52 4 0.63065 0.8617 13.255 4 Median 0.63065 0.8617 13.255 4 0 Median NaN NaN NaN 0 0 Median 12230000 7172500 5057700 12230000 7172500 5057700 0 0 0 189 812 191 626;627;628;629 920;921;922;923;924;925;926 920 7 ADPAFGLESSGIAGTTSDEPERIEESGNDEAR AHVRKVEEAAKVTGKADPAFGLESSGIAGT DEPERIEESGNDEARVEGQATDEKKEPKEP K A D A R V 4 2 1 3 0 0 6 4 0 2 1 0 0 1 2 4 2 0 0 0 0 0 32 1 3306.476 Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;B4DF22 Q59G16 764 795 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 3 4.7704E-05 63.901 1 2 0.9146 1.3011 18.997 2 Median NaN NaN NaN 0 0 Median 0.9146 1.3011 18.997 2 0 Median 19396000 8584100 10812000 0 0 0 19396000 8584100 10812000 190 257 192 630;631;632 927;928;929;930 929 4 ADPAFGLESSGIAGTTSDEPERIEESGNDEARVEGQATDEK AHVRKVEEAAKVTGKADPAFGLESSGIAGT GNDEARVEGQATDEKKEPKEPREGGGAIEE K A D E K K 5 2 1 4 0 1 8 5 0 2 1 1 0 1 2 4 3 0 0 1 0 0 41 2 4263.9164 Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;B4DF22 Q59G16 764 804 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 4 3.5003E-05 37.172 2 0.77408 0.95468 NaN 1 Median 0.77408 0.95468 NaN 1 0 Median NaN NaN NaN 0 0 Median 21209000 14812000 6397400 21209000 14812000 6397400 0 0 0 191 257 193 633;634 931;932;933 933 3 ADPDGPEAQAEACSGER ______________________________ PDGPEAQAEACSGERTYQELLVNQNPIAQP K A D E R T 4 1 0 2 1 1 3 2 0 0 0 0 0 0 2 1 0 0 0 0 0 0 17 0 1758.7115 D6RC52;D6RCB9;Q9NX24;J3QSY4 D6RC52 6 22 NHP2 H/ACA ribonucleoprotein complex subunit 2 yes no 2 1.2606E-25 175.6 4 2 0.63972 0.8849 10.562 6 Median 0.71194 0.94942 11.778 4 0 Median 0.55355 0.82934 1.1717 2 0 Median 85557000 50781000 34776000 54113000 30546000 23567000 31444000 20235000 11209000 192 990 194 635;636;637;638;639;640 934;935;936;937;938;939;940;941;942;943;944;945;946 939 13 ADQLTEEQIAEFK ______________________________ ______________________________ M A D F K E 2 0 0 1 0 2 3 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 13 0 1520.7359 Q9BRL5;P0DP25;P0DP24;P0DP23;B4DJ51;B2RDW0;H0Y7A7;F8WBR5;M0QZ52;G3V479 Q9BRL5 2 14 CALM3;CALM2;CALM1 yes no 2 8.0595E-13 163.12 4 0.98582 1.2597 9.2016 4 Median 0.98582 1.2597 9.2016 4 0 Median NaN NaN NaN 0 0 Median 48596000 27104000 21492000 48596000 27104000 21492000 0 0 0 193 741 195 641;642;643;644 947;948;949;950;951;952 948 6 ADRDESSPYAAMLAAQDVAQR GKETICRVTGGMKVKADRDESSPYAAMLAA SPYAAMLAAQDVAQRCKELGITALHIKLRA K A D Q R C 6 2 0 3 0 2 1 0 0 0 1 0 1 0 1 2 0 0 1 1 0 0 21 1 2264.0492 P62263;E5RH77;H0YB22 P62263 64 84 RPS14 40S ribosomal protein S14 yes no 3 4.9422E-23 114.84 10 6 0.70527 0.97506 36.937 16 Median 0.76266 1.0502 6.5378 10 0 Median 0.31567 0.5229 10.904 6 0 Median 935420000 647670000 287750000 306600000 171570000 135030000 628810000 476100000 152720000 194 1401 196;197 645;646;647;648;649;650;651;652;653;654;655;656;657;658;659;660 953;954;955;956;957;958;959;960;961;962;963;964;965;966;967;968;969;970;971;972;973;974;975;976 972 612 24 ADSLLAVVK LDLASESTAHAQSSKADSLLAVVKREPAEQ HAQSSKADSLLAVVKREPAEQPGDGERTDC K A D V K R 2 0 0 1 0 0 0 0 0 0 2 1 0 0 0 1 0 0 0 2 0 0 9 0 914.54368 A0PJ47;B7Z1C7;B7Z2F6;B7Z2Z1;B7Z5X3;B7ZLP5;A8K329;Q15424;Q14151 A0PJ47 285 293 SAFB2;SAFB Scaffold attachment factor B1;Scaffold attachment factor B2 yes no 2 0.0024402 93.195 2 1 1.1396 1.5388 81.134 2 Median 0.66178 0.867 NaN 1 0 Median 1.9626 2.731 NaN 1 0 Median 11795000 7619800 4175000 7160200 6111300 1048800 4634600 1508500 3126200 195 531 198 661;662;663 977;978;979;980 979 4 ADSVVVLLCR CGCRNVFLLGFIPAKADSVVVLLCRQPCAS FIPAKADSVVVLLCRQPCASQSSLKDINWD K A D C R Q 1 1 0 1 1 0 0 0 0 0 2 0 0 0 0 1 0 0 0 3 0 0 10 0 1130.6118 A0A024R7L5;A0A024R7L8;Q92900 A0A024R7L5 201 210 UPF1 Regulator of nonsense transcripts 1 yes no 2 0.0030725 123.72 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 830670 830670 0 830670 830670 0 0 0 0 196 180 199 664 981 981 1 ADTEEEFLAFR TPTSSKPQPKRSLRKADTEEEFLAFRKQTP SLRKADTEEEFLAFRKQTPSAGKAMHTPKP K A D F R K 2 1 0 1 0 0 3 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 11 0 1326.6092 P46013 P46013 1762 1772 MKI67 Antigen KI-67 yes yes 2 5.3151E-12 143.37 4 1 0.84775 1.153 22.053 5 Median 0.83219 1.1368 3.3867 4 0 Median 1.1181 1.8514 NaN 1 0 Median 242670000 127330000 115340000 143090000 78076000 65013000 99579000 49252000 50327000 197 1342 200 665;666;667;668;669 982;983;984;985;986;987;988;989;990 986 9 ADTEEEFLAFRK TPTSSKPQPKRSLRKADTEEEFLAFRKQTP LRKADTEEEFLAFRKQTPSAGKAMHTPKPA K A D R K Q 2 1 0 1 0 0 3 0 0 0 1 1 0 2 0 0 1 0 0 0 0 0 12 1 1454.7042 P46013 P46013 1762 1773 MKI67 Antigen KI-67 yes yes 2;3 7.1563E-25 180.09 8 2 0.9185 1.2102 34.501 6 Median 0.85584 1.1281 15.819 4 0 Median 1.1815 2.0329 4.7511 2 0 Median 277060000 153090000 123970000 186870000 112220000 74656000 90185000 40873000 49312000 198 1342 201 670;671;672;673;674;675;676;677;678;679 991;992;993;994;995;996;997;998;999;1000;1001;1002;1003 991 13 ADTGLDDDIENEADISMYGK EHSLQVSPSLEKGAKADTGLDDDIENEADI DDDIENEADISMYGKEELLQVVEAMKTLLL K A D G K E 2 0 1 5 0 0 2 2 0 2 1 1 1 0 0 1 1 0 1 0 0 0 20 0 2170.9212 O95235 O95235 541 560 KIF20A Kinesin-like protein KIF20A yes yes 2 1.5749E-13 86.641 2 0.48127 0.75106 5.9196 2 Median NaN NaN NaN 0 0 Median 0.48127 0.75106 5.9196 2 0 Median 59419000 39401000 20017000 0 0 0 59419000 39401000 20017000 199 1215 202 680;681 1004;1005;1006 1005 449 3 ADTLTDEINFLR DVDAAYMNKVELQAKADTLTDEINFLRALY QAKADTLTDEINFLRALYDAELSQMQTHIS K A D L R A 1 1 1 2 0 0 1 0 0 1 2 0 0 1 0 0 2 0 0 0 0 0 12 0 1406.7042 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;CON__P48668;B2R853;P48668;B4DWU6;B4DRY0;CON__P04259 B4DRR0 259 270 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 9.4693E-05 123.88 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 126430000 126430000 0 9847200 9847200 0 116580000 116580000 0 + 200 459;953 203 682;683;684 1007;1008;1009 1007 3 ADTLTPEECQQFK KRLHEKVNIIPLIAKADTLTPEECQQFKKQ AKADTLTPEECQQFKKQIMKEIQEHKIKIY K A D F K K 1 0 0 1 1 2 2 0 0 0 1 1 0 1 1 0 2 0 0 0 0 0 13 0 1565.7032 Q3B7A3;Q59EY4;B4DUD6;Q8TC62;E7ES33;Q3LIE9;A4GYY8;A8K3D0;E7EPK1;Q16181;A0A0U1RRE1;B4DNE4;A0A024RA87;G3V1Q4;A0A023T695;B4DPQ6 Q3B7A3 195 207 SEPT7;Nbla02942;DKFZp686F17268 Septin-7 yes no 2 0.0046158 55.567 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 728000 0 728000 728000 0 728000 0 0 0 201 555 204 685 1010 1010 1 ADTQTYQPYNK DFIDDLADLSCLVYRADTQTYQPYNKDWIK LVYRADTQTYQPYNKDWIKEKIYVLLRRQA R A D N K D 1 0 1 1 0 2 0 0 0 0 0 1 0 0 1 0 2 0 2 0 0 0 11 0 1327.6044 A0A024R6D4;P84090 A0A024R6D4 74 84 ERH Enhancer of rudimentary homolog yes no 2 2.5691E-37 200.07 4 1 0.65909 0.82126 7.6879 4 Median 0.68877 0.86689 8.07 3 0 Median 0.50487 0.77804 NaN 1 0 Median 126440000 79199000 47237000 103730000 64322000 39408000 22706000 14877000 7829100 202 159 205 686;687;688;689;690 1011;1012;1013;1014;1015;1016;1017;1018;1019;1020 1016 10 ADTTSTVTPVPGQEK CGEESSKAKEVTIAKADTTSTVTPVPGQEK ADTTSTVTPVPGQEKGSALEGRADTTTGSA K A D E K G 1 0 0 1 0 1 1 1 0 0 0 1 0 0 2 1 4 0 0 2 0 0 15 0 1529.7573 A0A1B0GV09;Q9H9B1;A0A1B0GU48 A0A1B0GV09 614 628 EHMT1 Histone-lysine N-methyltransferase EHMT1 no no 2 0.0063661 96.604 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1452300 1452300 0 1452300 1452300 0 0 0 0 203 518 206 691 1021 1021 1 ADTTTGSAAGPPLSEDDK TPVPGQEKGSALEGRADTTTGSAAGPPLSE TTGSAAGPPLSEDDKLQGAASHVPEGFDPT R A D D K L 3 0 0 3 0 0 1 2 0 0 1 1 0 0 2 2 3 0 0 0 0 0 18 0 1731.7799 A0A1B0GV09;Q9H9B1;A0A1B0GU48 A0A1B0GV09 636 653 EHMT1 Histone-lysine N-methyltransferase EHMT1 no no 2 0.00015747 100.11 3 2 0.82557 1.5716 47.19 4 Linear 0.52626 0.68008 40.21 2 0 Median 0.9664 1.3849 2.4606 2 0 Median 18381000 10241000 8140300 5920900 4096300 1824600 12460000 6144700 6315700 204 518 207 692;693;694;695;696 1022;1023;1024;1025;1026;1027;1028;1029;1030;1031;1032;1033;1034 1027 13 ADVDVQPYAFTTK YPNVGKSSFINKVTRADVDVQPYAFTTKSL TRADVDVQPYAFTTKSLFVGHMDYKYLRWQ R A D T K S 2 0 0 2 0 1 0 0 0 0 0 1 0 1 1 0 2 0 1 2 0 0 13 0 1453.7089 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;B4DHR2;O60747 Q53GS0 191 203 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 1.2839E-25 199.68 4 2 0.61123 0.84242 13.31 6 Median 0.71326 0.93563 15.595 4 0 Median 0.51235 0.81067 1.0651 2 0 Median 764240000 466820000 297420000 552110000 325630000 226470000 212140000 141190000 70948000 205 975 208 697;698;699;700;701;702 1035;1036;1037;1038;1039;1040;1041 1036 7 ADVEEEFLAFR TPTNTKQRPKRSLKKADVEEEFLAFRKLTP SLKKADVEEEFLAFRKLTPSAGKAMHTPKA K A D F R K 2 1 0 1 0 0 3 0 0 0 1 0 0 2 0 0 0 0 0 1 0 0 11 0 1324.6299 P46013 P46013 1884 1894 MKI67 Antigen KI-67 yes yes 2 0.0004229 106.88 1 2 0.95132 1.4957 27.908 3 Plateau 0.68035 0.91778 NaN 1 0 Median 0.9418 1.4743 7.7278 2 0 Median 62589000 32386000 30203000 7867000 4609500 3257600 54722000 27777000 26946000 206 1342 209 703;704;705 1042;1043;1044;1045;1046 1046 5 ADVEEEFLAFRK TPTNTKQRPKRSLKKADVEEEFLAFRKLTP LKKADVEEEFLAFRKLTPSAGKAMHTPKAA K A D R K L 2 1 0 1 0 0 3 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 12 1 1452.7249 P46013 P46013 1884 1895 MKI67 Antigen KI-67 yes yes 2;3 0.0047197 100.48 2 1 1.1631 1.7003 7.17 2 Median 1.174 1.6163 NaN 1 0 Median 1.1522 1.7888 NaN 1 0 Median 10796000 5185500 5610500 2668500 1466200 1202300 8127500 3719300 4408200 207 1342 210 706;707;708 1047;1048;1049 1047 3 ADVEEEFLALR TPTSTKQWPKRSLRKADVEEEFLALRKLTP SLRKADVEEEFLALRKLTPSAGKAMLTPKP K A D L R K 2 1 0 1 0 0 3 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 11 0 1290.6456 P46013 P46013 1154 1164 MKI67 Antigen KI-67 yes no 2 3.994E-22 163.94 4 2 0.85093 1.1663 23.057 6 Median 0.81414 1.1088 6.181 4 0 Median 1.0532 1.7325 2.9325 2 0 Median 508440000 255910000 252530000 192410000 101170000 91238000 316040000 154740000 161290000 208 1342 211 709;710;711;712;713;714 1050;1051;1052;1053;1054;1055;1056;1057;1058;1059;1060 1060 11 ADVEEEFLALRK TPTSTKQWPKRSLRKADVEEEFLALRKLTP LRKADVEEEFLALRKLTPSAGKAMLTPKPA K A D R K L 2 1 0 1 0 0 3 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 12 1 1418.7405 P46013 P46013 1154 1165 MKI67 Antigen KI-67 yes no 2;3 5.2693E-16 154.24 6 3 0.91634 1.2133 27.563 9 Median 0.90654 1.2015 3.0899 6 0 Median 1.1756 2.1031 6.6453 3 0 Median 1413400000 721420000 691940000 1100200000 563860000 536300000 313210000 157560000 155650000 209 1342 212 715;716;717;718;719;720;721;722;723 1061;1062;1063;1064;1065;1066;1067;1068;1069;1070;1071;1072;1073;1074;1075;1076;1077;1078;1079 1067 19 ADVEEESLALR TPTIFKPQSKRSLRKADVEEESLALRKRTP SLRKADVEEESLALRKRTPSVGKAMDTPKP K A D L R K 2 1 0 1 0 0 3 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 11 0 1230.6092 P46013 P46013 2246 2256 MKI67 Antigen KI-67 yes yes 2 1.2057E-11 153.24 3 2 0.80871 1.101 22.341 5 Median 0.78236 1.0518 3.0142 3 0 Median 0.97934 1.5924 5.248 2 0 Median 172890000 89249000 83642000 36087000 19041000 17046000 136800000 70208000 66596000 210 1342 213 724;725;726;727;728 1080;1081;1082;1083;1084;1085;1086;1087;1088;1089 1088 10 ADVEEESLALRK TPTIFKPQSKRSLRKADVEEESLALRKRTP LRKADVEEESLALRKRTPSVGKAMDTPKPA K A D R K R 2 1 0 1 0 0 3 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 12 1 1358.7042 P46013 P46013 2246 2257 MKI67 Antigen KI-67 yes yes 2;3 1.5296E-15 166.66 8 4 0.93667 1.224 25.815 12 Median 0.88156 1.1677 5.9445 8 0 Median 1.131 1.9728 5.4161 4 0 Median 1242500000 600040000 642450000 722920000 358970000 363950000 519560000 241070000 278490000 211 1342 214 729;730;731;732;733;734;735;736;737;738;739;740 1090;1091;1092;1093;1094;1095;1096;1097;1098;1099;1100;1101;1102;1103;1104;1105;1106;1107;1108;1109;1110 1093 21 ADVEGELLACR TPTSTKQRPKRSIRKADVEGELLACRNLMP SIRKADVEGELLACRNLMPSAGKAMHTPKP K A D C R N 2 1 0 1 1 0 2 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1231.5867 P46013 P46013 1276 1286 MKI67 Antigen KI-67 yes yes 2 7.6628E-18 160.59 4 2 0.92045 1.2664 26.33 6 Median 0.89159 1.2098 7.6757 4 0 Median 1.2987 1.9791 1.9133 2 0 Median 208620000 111480000 97140000 172610000 94520000 78093000 36008000 16961000 19047000 212 1342 215 741;742;743;744;745;746 1111;1112;1113;1114;1115;1116;1117;1118;1119 1115 9 ADVIQATGDAICIFR GVDPVEAFAQNVLSKADVIQATGDAICIFR ADVIQATGDAICIFRELQCLTPRGRYDIRI K A D F R E 3 1 0 2 1 1 0 1 0 3 0 0 0 1 0 0 1 0 0 1 0 0 15 0 1648.8243 A0A024R4Z6;Q08945;E9PMD4 A0A024R4Z6 189 203 SSRP1 FACT complex subunit SSRP1 yes no 2 8.5005E-46 179.35 4 2 0.75733 1.0544 5.8453 6 Median 0.76428 1.0544 3.2547 4 0 Median 0.61942 1.0165 10.725 2 0 Median 1079800000 635740000 444110000 817270000 467270000 350000000 262580000 168470000 94106000 213 132 216 747;748;749;750;751;752 1120;1121;1122;1123;1124;1125;1126;1127;1128;1129;1130;1131;1132 1125 13 ADVQAVVSAVTLLR MQCILQGLDVSNMWKADVQAVVSAVTLLRL KADVQAVVSAVTLLRLLLNCPLSGEKASLL K A D L R L 3 1 0 1 0 1 0 0 0 0 2 0 0 0 0 1 1 0 0 4 0 0 14 0 1440.83 A8K4P8;Q14146 A8K4P8 1262 1275 URB2 Unhealthy ribosome biogenesis protein 2 homolog yes no 2 0.0012263 92.781 4 0.33747 0.47552 NaN 1 Median 0.33747 0.47552 NaN 1 0 Median NaN NaN NaN 0 0 Median 8805800 7965100 840710 8805800 7965100 840710 0 0 0 214 606 217 753;754;755;756 1133;1134;1135;1136;1137 1133 5 ADVQSIIGLQR VGRMFKQFNKLTEDKADVQSIIGLQRFFET TEDKADVQSIIGLQRFFETRMNEAFGDTKF K A D Q R F 1 1 0 1 0 2 0 1 0 2 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1198.667 B2R8R5;Q13263;M0R0K9 B2R8R5 780 790 TRIM28 Transcription intermediary factor 1-beta yes no 2 1.945E-15 171.33 4 2 0.45274 0.60532 118.62 5 Median 0.39233 0.52663 12.887 3 0 Median 2.9489 4.5949 1.851 2 0 Median 156100000 89560000 66540000 100710000 78264000 22443000 55394000 11297000 44097000 215 716 218 757;758;759;760;761;762 1138;1139;1140;1141;1142;1143;1144;1145 1139 8 AEAEAQAEELSFPR VGDLAQFMVQNGLSRAEAEAQAEELSFPRS RAEAEAQAEELSFPRSVVEFLQGYIGVPHG R A E P R S 4 1 0 0 0 1 4 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 14 0 1546.7264 A0A024R5C5;P11498;E9PS68 A0A024R5C5 929 942 PC Pyruvate carboxylase;Pyruvate carboxylase, mitochondrial yes no 2 7.4243E-06 134.56 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10781000 7878100 2903300 7878100 7878100 0 2903300 0 2903300 216 139 219 763;764;765;766 1146;1147;1148;1149;1150 1146 5 AEAELLQQQK LKEKMQAVQEATRLKAEAELLQQQKELAQE ATRLKAEAELLQQQKELAQEQARRLQEDKE K A E Q K E 2 0 0 0 0 3 2 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1156.6088 Q15149 Q15149 2464 2473 PLEC Plectin yes yes 2 1.209E-07 123.98 4 0.96847 1.2309 6.6109 4 Median 0.96847 1.2309 6.6109 4 0 Median NaN NaN NaN 0 0 Median 37447000 20290000 17157000 37447000 20290000 17157000 0 0 0 217 1507 220 767;768;769;770 1151;1152;1153;1154;1155;1156;1157;1158;1159 1157 9 AEAESLYQSK AEVKAQYEDIAQKSKAEAESLYQSKYEELQ AQKSKAEAESLYQSKYEELQITAGRHGDSV K A E S K Y 2 0 0 0 0 1 2 0 0 0 1 1 0 0 0 2 0 0 1 0 0 0 10 0 1124.535 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 367 376 KRT1 Keratin, type II cytoskeletal 1 no no 1;2 2.9204E-22 179.1 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 412390000 412390000 0 238820000 238820000 0 173570000 173570000 0 + 218 1113;1114 221 771;772;773;774 1160;1161;1162;1163 1161 4 AEAESLYQSKYEELQITAGR AEVKAQYEDIAQKSKAEAESLYQSKYEELQ LYQSKYEELQITAGRHGDSVRNSKIEISEL K A E G R H 3 1 0 0 0 2 4 1 0 1 2 1 0 0 0 2 1 0 2 0 0 0 20 1 2285.1176 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 367 386 KRT1 Keratin, type II cytoskeletal 1 no no 3 0.016326 64.346 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1004400 1004400 0 1004400 1004400 0 0 0 0 + 219 1113;1114 222 775 1164 1164 1 AEAESMYQIK AEVKAQYEDIANRSRAEAESMYQIKYEELQ ANRSRAEAESMYQIKYEELQSLAGKHGDDL R A E I K Y 2 0 0 0 0 1 2 0 0 1 0 1 1 0 0 1 0 0 1 0 0 0 10 0 1168.5434 CON__P05787;P05787;Q969I0;Q7L4M3;CON__H-INV:HIT000292931;CON__Q9H552 CON__P05787 276 285 KRT8 Keratin, type II cytoskeletal 8 yes no 2 0.0017379 68.016 1 2.4371 3.7035 NaN 1 Median NaN NaN NaN 0 0 Median 2.4371 3.7035 NaN 1 0 Median 10912000 3551300 7360400 0 0 0 10912000 3551300 7360400 + 220 955 223 776 1165 1165 327 1 AEAESWYQTK AEVKAQYEEIAQRSRAEAESWYQTKYEELQ AQRSRAEAESWYQTKYEELQVTAGRHGDDL R A E T K Y 2 0 0 0 0 1 2 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 10 0 1211.5459 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;B4DRY0;CON__P04259;B4DKV4;CON__O95678;O95678 B4DRR0 321 330 KRT6A;KRT6C;KRT75 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 75 no no 2 0.0052809 74.165 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14722000 14722000 0 0 0 0 14722000 14722000 0 + 221 459;953;946 224 777;778 1166;1167 1167 2 AEAETLPSLSITK IHELFVPENKLDHVRAEAETLPSLSITKLD VRAEAETLPSLSITKLDLQWVQVLSEGWAT R A E T K L 2 0 0 0 0 0 2 0 0 1 2 1 0 0 1 2 2 0 0 0 0 0 13 0 1358.7293 Q5TB52;B4DWB5;O95340 Q5TB52 239 251 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes no 2 0.001786 71.03 2 0.40484 0.51955 10.723 2 Median 0.40484 0.51955 10.723 2 0 Median NaN NaN NaN 0 0 Median 20437000 14965000 5471700 20437000 14965000 5471700 0 0 0 222 865 225 779;780 1168;1169 1169 2 AEAGAEAEAEEENTNPSSSGSAHSVAK KGEPEAPPASGLASRAEAGAEAEAEEENTN NTNPSSSGSAHSVAKEPAKGAAPNAPRTRK R A E A K E 7 0 2 0 0 0 6 2 1 0 0 1 0 0 1 5 1 0 0 1 0 0 27 0 2629.1376 O43248;J3KMZ0 O43248 193 219 HOXC11 Homeobox protein Hox-C11 yes no 3 1.4017E-17 122.44 4 2 0.57197 0.72384 26.712 5 Median 0.65007 0.81558 19.27 3 0 Median 0.37617 0.56476 7.6468 2 0 Median 47730000 30177000 17553000 26450000 14777000 11672000 21281000 15400000 5881000 223 1183 226 781;782;783;784;785;786 1170;1171;1172;1173;1174;1175;1176;1177;1178;1179;1180;1181;1182 1170 13 AEAGAGSATEFQFR DTYRRSAVPPGADKKAEAGAGSATEFQFRG KAEAGAGSATEFQFRGGFGRGRGQPPQ___ K A E F R G 4 1 0 0 0 1 2 2 0 0 0 0 0 2 0 1 1 0 0 0 0 0 14 0 1440.6634 P46783;Q59GE4;Q9NQ39 P46783 140 153 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 2 4.2439E-14 150.09 4 1 0.79556 1.0632 16.091 5 Median 0.78773 1.0559 4.4532 4 0 Median 0.963 1.5254 NaN 1 0 Median 145940000 75402000 70542000 102600000 54077000 48525000 43343000 21325000 22018000 224 1347 227 787;788;789;790;791 1183;1184;1185;1186;1187;1188;1189;1190;1191 1187 9 AEAGDNLGALVR TVVTGIEMFHKSLERAEAGDNLGALVRGLK LERAEAGDNLGALVRGLKREDLRRGLVMVK R A E V R G 3 1 1 1 0 0 1 2 0 0 2 0 0 0 0 0 0 0 0 1 0 0 12 0 1184.6149 P49411 P49411 316 327 TUFM Elongation factor Tu, mitochondrial yes yes 2 0.00057763 105.98 2 1 0.40886 0.55061 2.3606 2 Median 0.40886 0.55061 2.3606 2 0 Median NaN NaN NaN 0 0 Median 66999000 31283000 35717000 44240000 31283000 12957000 22760000 0 22760000 225 1350 228 792;793;794 1192;1193;1194;1195 1193 4 AEAGPEGVAPAPEGEK KENGDKSEAQKPSEKAEAGPEGVAPAPEGE EAGPEGVAPAPEGEKKQKPARKRRMVEEIG K A E E K K 4 0 0 0 0 0 4 3 0 0 0 1 0 0 3 0 0 0 0 1 0 0 16 0 1507.7155 B7Z766;A0A087X054;B7Z2N4;B3KXH0;Q9Y4L1;B7Z602 B7Z766 519 534 HYOU1 Hypoxia up-regulated protein 1 yes no 2 0.046944 40.577 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 226 369 229 795 1196 1196 1 AEALEDLVGFK NLPGSKRQPQTPKEKAEALEDLVGFKELFQ PKEKAEALEDLVGFKELFQTPGHTEESMTD K A E F K E 2 0 0 1 0 0 2 1 0 0 2 1 0 1 0 0 0 0 0 1 0 0 11 0 1190.6183 P46013 P46013 2431 2441 MKI67 Antigen KI-67 yes yes 2 0.0011461 72.643 2 2 0.96649 1.4011 17.145 4 Median 0.90213 1.1913 4.8434 2 0 Median 1.0102 1.5968 0.40613 2 0 Median 856190000 446090000 410090000 543400000 288350000 255050000 312780000 157740000 155040000 227 1342 230 796;797;798;799 1197;1198;1199;1200;1201 1198 4 AEAVVNTVDISER KKRRMLKRLEQTRKKAEAVVNTVDISEREK KKAEAVVNTVDISEREKVAQLRSLYKKAGL K A E E R E 2 1 1 1 0 0 2 0 0 1 0 0 0 0 0 1 1 0 0 3 0 0 13 0 1401.71 Q8IY81;B4DKU3 Q8IY81 764 776 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 1.8788E-10 134.13 4 2 0.55911 0.77039 34.032 6 Median 0.69815 0.95202 26.988 4 0 Median 0.40626 0.57447 0.80576 2 0 Median 45442000 28742000 16700000 23272000 14782000 8489700 22170000 13960000 8210000 228 1628 231 800;801;802;803;804;805 1202;1203;1204;1205;1206;1207;1208 1207 6 AEDELLDLQDK RRLDELEEATKNLQKAEDELLDLQDKVIQA NLQKAEDELLDLQDKVIQAEGSNSSMLAEI K A E D K V 1 0 0 3 0 1 2 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1287.6194 A0A024RAC0;Q86V48;E5RFK8;Q05DE3 A0A024RAC0 40 50 LUZP1 Leucine zipper protein 1 yes no 2 1.5108E-05 125.75 3 1.2126 1.538 9.3172 2 Median 1.2126 1.538 9.3172 2 0 Median NaN NaN NaN 0 0 Median 8996800 3848600 5148100 8996800 3848600 5148100 0 0 0 229 238 232 806;807;808 1209;1210;1211;1212 1209 4 AEDNADTLALVFEAPNQEK KILKCAGNEDIITLRAEDNADTLALVFEAP ADTLALVFEAPNQEKVSDYEMKLMDLDVEQ R A E E K V 4 0 2 2 0 1 3 0 0 0 2 1 0 1 1 0 1 0 0 1 0 0 19 0 2073.9855 Q6FI35;Q6FHF5;P12004 Q6FI35 92 110 PCNA Proliferating cell nuclear antigen yes no 2 7.7233E-29 162.88 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27348000 27348000 0 27348000 27348000 0 0 0 0 230 1259 233 809;810 1213;1214 1213 2 AEDYEENLQVMR DGEGKVRMIVCVNPKAEDYEENLQVMRFAE NPKAEDYEENLQVMRFAEVTQEVEVARPVD K A E M R F 1 1 1 1 0 1 3 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 12 0 1495.6613 H7BYN4;Q02241 H7BYN4 417 428 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 0.00096142 70.908 2 0.96983 1.2789 NaN 1 Median NaN NaN NaN 0 0 Median 0.96983 1.2789 NaN 1 0 Median 7211500 2183500 5028000 0 0 0 7211500 2183500 5028000 231 1117 234 811;812 1215;1216 1216 397 2 AEEDEILNR DGGTVSQEEEDRKPKAEEDEILNRSPRNRK EDRKPKAEEDEILNRSPRNRKPRRE_____ K A E N R S 1 1 1 1 0 0 3 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 9 0 1087.5146 P27824 P27824 574 582 CANX Calnexin yes yes 2 0.0055975 71.501 2 1.7737 2.5421 3.9859 2 Median NaN NaN NaN 0 0 Median 1.7737 2.5421 3.9859 2 0 Median 16069000 5468000 10601000 0 0 0 16069000 5468000 10601000 232 1303 235 813;814 1217;1218 1217 2 AEEDTQFNYHR ELAQEYDKRKKEMVKAEEDTQFNYHRKKNI EMVKAEEDTQFNYHRKKNIAAERKEAKQEK K A E H R K 1 1 1 1 0 1 2 0 1 0 0 0 0 1 0 0 1 0 1 0 0 0 11 0 1408.6008 Q14683;G8JLG1;Q6P2R1;Q6MZR8;A8K7A6;Q68EN4;H0Y7K8;Q5H934 Q14683 178 188 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.00018952 85.731 1 2 0.72448 1.0045 9.5196 3 Plateau 0.72448 1.0045 NaN 1 0 Median 0.7066 0.92024 11.407 2 0 Median 11290000 6199000 5091300 6245500 3319000 2926500 5044800 2880100 2164700 233 1492 236 815;816;817 1219;1220;1221 1220 3 AEEENEFQIPGR LRQMSDLRLQANWNRAEEENEFQIPGRTRP WNRAEEENEFQIPGRTRPSSDQLKEASGTD R A E G R T 1 1 1 0 0 1 4 1 0 1 0 0 0 1 1 0 0 0 0 0 0 0 12 0 1417.6474 B3KMI3;A8K6Q9;A0A024RDV9;Q8N0X7;B4DXT5;B3KML8 B3KMI3 342 353 SPG20 Spartin yes no 2 0.040355 75.652 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 691800 691800 0 691800 691800 0 0 0 0 234 323 237 818 1222 1222 1 AEEFVVLSQEPSVTETIAPK FEVYSPMDDAGFPVKAEEFVVLSQEPSVTE VLSQEPSVTETIAPKIARPFIEALKSIEYL K A E P K I 2 0 0 0 0 1 4 0 0 1 1 1 0 1 2 2 2 0 0 3 0 0 20 0 2173.1154 Q96L91 Q96L91 2079 2098 EP400 E1A-binding protein p400 yes yes 2 6.6008E-05 90.367 2 0.33447 0.41717 NaN 1 Median 0.33447 0.41717 NaN 1 0 Median NaN NaN NaN 0 0 Median 1549800 982530 567290 1549800 982530 567290 0 0 0 235 1692 238 819;820 1223;1224;1225 1223 3 AEEILEK RNEKIAVHCTVRGAKAEEILEKGLKVREYE HCTVRGAKAEEILEKGLKVREYELRKNNFS K A E E K G 1 0 0 0 0 0 3 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 7 0 830.43855 Q5VVD0;P62913;Q5VVC8;Q08ES8;Q5VVC9 Q5VVD0 79 85 RPL11 60S ribosomal protein L11 yes no 2 0.015292 91.626 1 1 0.71844 1.0461 24.535 2 Median 0.66865 0.87947 NaN 1 0 Median 0.77194 1.2443 NaN 1 0 Median 240000000 140340000 99655000 202210000 117800000 84405000 37790000 22540000 15251000 236 1416 239 821;822 1226;1227 1227 1 AEELGQELK ASENLRQELTSQAERAEELGQELKAWQEKF TSQAERAEELGQELKAWQEKFFQKEQALST R A E L K A 1 0 0 0 0 1 3 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1015.5186 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1322 1330 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 7.5652E-05 103.83 3 1 0.62887 0.79699 NaN 1 Median 0.62887 0.79699 NaN 1 0 Median NaN NaN NaN 0 0 Median 10604000 8044800 2558700 10604000 8044800 2558700 0 0 0 237 148;1499 240 823;824;825;826 1228;1229;1230;1231 1229 4 AEEPSDLIGPEAPK SQEEFLENPWKDRTKAEEPSDLIGPEAPKT KAEEPSDLIGPEAPKTLTSQDDKPLNYGHA K A E P K T 2 0 0 1 0 0 3 1 0 1 1 1 0 0 3 1 0 0 0 0 0 0 14 0 1451.7144 Q8N5F7 Q8N5F7 284 297 NKAP NF-kappa-B-activating protein yes yes 2 0.0021816 48.44 2 1 0.75408 1.0016 1.1081 2 Median 0.78724 1.0095 NaN 1 0 Median 0.72231 0.99377 NaN 1 0 Median 10813000 4967700 5845300 5763400 2249600 3513800 5049700 2718200 2331500 238 1640 241 827;828;829 1232;1233;1234 1232 3 AEEVATFFAK VKFYYDGKVMKLSPKAEEVATFFAKMLDHE KLSPKAEEVATFFAKMLDHEYTTKEIFRKN K A E A K M 3 0 0 0 0 0 2 0 0 0 0 1 0 2 0 0 1 0 0 1 0 0 10 0 1111.555 P11387;B9EG90 P11387 253 262 TOP1 DNA topoisomerase 1 yes no 1;2 1.8449E-08 155.07 5 2 0.77421 1.0225 24.634 7 Median 0.7736 1.0172 20.586 5 0 Median 0.85032 1.3416 1.8719 2 0 Median 1425600000 766120000 659460000 985520000 536710000 448810000 440070000 229420000 210650000 239 1255 242 830;831;832;833;834;835;836 1235;1236;1237;1238;1239;1240;1241;1242;1243;1244;1245;1246;1247;1248;1249 1235 15 AEEYTEETEEREESTTGFDK SRSSSSSSQSSHSYKAEEYTEETEEREEST EETEEREESTTGFDKSRLGTKDFVGPSERG K A E D K S 1 1 0 1 0 0 8 1 0 0 0 1 0 1 0 1 4 0 1 0 0 0 20 1 2378.9874 Q9Y2W1 Q9Y2W1 792 811 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 3 1.1115E-13 85.146 4 2 0.60079 0.80646 32.737 6 Median 0.57707 0.76226 21.361 4 0 Median 0.7747 1.2151 3.8054 2 0 Median 76685000 46421000 30263000 52686000 32749000 19937000 23999000 13672000 10327000 240 1809 243 837;838;839;840;841;842 1250;1251;1252;1253;1254;1255;1256;1257;1258;1259;1260;1261;1262;1263 1257 14 AEFAAPSTDAPDK ALVKLGNTTVICGVKAEFAAPSTDAPDKGY VKAEFAAPSTDAPDKGYVVPNVDLPPLCSS K A E D K G 4 0 0 2 0 0 1 0 0 0 0 1 0 1 2 1 1 0 0 0 0 0 13 0 1318.6041 Q96B26 Q96B26 64 76 EXOSC8 Exosome complex component RRP43 yes yes 2 0.0001811 88.134 4 0.83314 1.0523 16.148 2 Median 0.83314 1.0523 16.148 2 0 Median NaN NaN NaN 0 0 Median 30900000 12217000 18683000 30900000 12217000 18683000 0 0 0 241 1682 244 843;844;845;846 1264;1265;1266;1267 1267 4 AEFEDQDDEAR DDLKGEMQKQAQLNRAEFEDQDDEARVQYE QLNRAEFEDQDDEARVQYEGFRPGMYVRIE R A E A R V 2 1 0 3 0 1 3 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 11 0 1323.5215 Q14692 Q14692 864 874 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 2.0059E-05 96.143 1 1 0.91959 1.3197 6.0357 2 Median 1.0016 1.3773 NaN 1 0 Median 0.8443 1.2646 NaN 1 0 Median 13432000 7182100 6250400 6378800 3512300 2866500 7053700 3669800 3383900 242 1495 245 847;848 1268;1269;1270 1268 3 AEFGDFDIK MLFSSGTVQLTTTSRAEFGDFDIKTVLQEI LTTTSRAEFGDFDIKTVLQEIKRGKRMKCT R A E I K T 1 0 0 2 0 0 1 1 0 1 0 1 0 2 0 0 0 0 0 0 0 0 9 0 1040.4815 Q8IWS0;A0A0D9SGE8;Q5JRC6;B4E138 Q8IWS0 258 266 PHF6 PHD finger protein 6 yes no 2 0.0072223 76.064 3 0.95162 1.1787 4.9137 3 Median 0.95162 1.1787 4.9137 3 0 Median NaN NaN NaN 0 0 Median 93048000 49321000 43726000 93048000 49321000 43726000 0 0 0 243 1625 246 849;850;851 1271;1272;1273;1274;1275 1272 5 AEGDSAGTAGTPGGTPAGDK RKLRIYISNTFSPSKAEGDSAGTAGTPGGT AGTAGTPGGTPAGDKVASWELRVEGKLLDD K A E D K V 4 0 0 2 0 0 1 6 0 0 0 1 0 0 2 1 3 0 0 0 0 0 20 0 1715.7598 J3KMX2;B9EGA3;Q92925 J3KMX2 132 151 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes no 2 0.0056226 29.689 1 0.60826 0.77123 NaN 1 Median 0.60826 0.77123 NaN 1 0 Median NaN NaN NaN 0 0 Median 1521200 886450 634780 1521200 886450 634780 0 0 0 244 927 247 852 1276;1277 1276 2 AEGDVAALNR GLQRELDGERERREKAEGDVAALNRRIQLV ERREKAEGDVAALNRRIQLVEEELDRAQER K A E N R R 3 1 1 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1014.5094 B4DVY2;V9HW56;P67936;B4DTB1 B4DVY2 45 54 HEL-S-108;TPM4 Tropomyosin alpha-4 chain yes no 2 0.028499 49.715 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2148800 0 2148800 0 0 0 2148800 0 2148800 + 245 864 248 853 1278 1278 1 AEGYAEGDLTLYHR QAKTVTELVTKKKPKAEGYAEGDLTLYHRT KAEGYAEGDLTLYHRTSVTDFLRAANPVDF K A E H R T 2 1 0 1 0 0 2 2 1 0 2 0 0 0 0 0 1 0 2 0 0 0 14 0 1593.7423 Q8IY81;B4DKU3 Q8IY81 238 251 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2;3 3.5569E-07 136.96 7 4 0.70412 0.96294 9.952 9 Median 0.72278 0.95879 9.1911 6 0 Median 0.60863 0.96294 13.195 3 0 Median 187000000 103880000 83125000 97802000 54869000 42933000 89199000 49007000 40192000 246 1628 249 854;855;856;857;858;859;860;861;862;863;864 1279;1280;1281;1282;1283;1284;1285;1286;1287;1288;1289;1290;1291;1292;1293;1294;1295;1296;1297;1298;1299 1280 21 AEHDQLLLNYAK ARERAKLQIELGKCKAEHDQLLLNYAKKES KCKAEHDQLLLNYAKKESDLNGAQIKLREY K A E A K K 2 0 1 1 0 1 1 0 1 0 3 1 0 0 0 0 0 0 1 0 0 0 12 0 1413.7252 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;A0A0D9SFY5 P20700 112 123 LMNB1 Lamin-B1 yes no 3 0.0023152 40.725 2 1.5857 2.366 12.596 2 Median NaN NaN NaN 0 0 Median 1.5857 2.366 12.596 2 0 Median 16942000 6159000 10783000 0 0 0 16942000 6159000 10783000 247 1285 250 865;866 1300;1301;1302;1303 1301 4 AEHDSILAEK PEYIYTRLEMYNILKAEHDSILAEKAEKDS YNILKAEHDSILAEKAEKDSKPIKVTLPDG K A E E K A 2 0 0 1 0 0 2 0 1 1 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1111.551 Q5M7Z9;Q53GX7;P26639;B2RDX5;D6R9F8;D6RBR8;D6RCA5;D6RDJ6 Q5M7Z9 66 75 TARS Threonine--tRNA ligase, cytoplasmic yes no 2 0.0018994 128.6 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3490700 3490700 0 3490700 3490700 0 0 0 0 248 1298 251 867 1304 1304 1 AEIIDQDLYER FSGLRDTVTPGELLKAEIIDQDLYERLEHG ELLKAEIIDQDLYERLEHGQATAKDVGSLA K A E E R L 1 1 0 2 0 1 2 0 0 2 1 0 0 0 0 0 0 0 1 0 0 0 11 0 1363.662 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 575 585 EPPK1 Epiplakin no no 2 0.0011606 105.2 3 0.29047 0.40813 NaN 1 Median 0.29047 0.40813 NaN 1 0 Median NaN NaN NaN 0 0 Median 7268400 6785800 482670 7268400 6785800 482670 0 0 0 249 373;1386 252 868;869;870 1305;1306;1307 1306 3 AEIISLCK TCSLFMRNIAPNISRAEIISLCKRYPGFMR IAPNISRAEIISLCKRYPGFMRVALSEPQP R A E C K R 1 0 0 0 1 0 1 0 0 2 1 1 0 0 0 1 0 0 0 0 0 0 8 0 932.5001 Q9BXP5;H7C3A1;H7C1K0 Q9BXP5 435 442 SRRT Serrate RNA effector molecule homolog yes no 2 0.044424 45.081 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2195700 2195700 0 2195700 2195700 0 0 0 0 250 1722 253 871 1308 1308 1 AEIPCEDEQEQEHNGPLDNK SFSEQHISQLQESIRAEIPCEDEQEQEHNG EDEQEQEHNGPLDNKGKSTAGNFLVNPLEP R A E N K G 1 0 2 2 1 2 5 1 1 1 1 1 0 0 2 0 0 0 0 0 0 0 20 0 2350.9972 Q96SB4;A0A024RCU9;A8K8B2;H3BLV9;H0Y932 Q96SB4 451 470 SRPK1 SRSF protein kinase 1 yes no 3 6.9997E-05 78.225 3 2 1.003 1.2914 75.119 5 Median 0.88144 1.1007 19.835 3 0 Median 2.8784 4.0779 20.268 2 0 Median 41295000 16855000 24440000 30534000 14575000 15960000 10760000 2280000 8480400 251 1699 254 872;873;874;875;876 1309;1310;1311;1312;1313;1314;1315;1316;1317 1315 9 AEISFEDRK AGAGGLAIAVEGPSKAEISFEDRKDGSCGV VEGPSKAEISFEDRKDGSCGVAYVVQEPGD K A E R K D 1 1 0 1 0 0 2 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 9 1 1093.5404 P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5;Q2VP91;H0Y5C6 P21333 2281 2289 FLNA;FLJ00119 Filamin-A yes no 2 0.0010421 108.98 3 1 0.58355 0.77029 47.468 4 Median 0.791 1.0469 40.67 3 0 Median 0.29381 0.45601 NaN 1 0 Median 144170000 83276000 60894000 135980000 78233000 57751000 8185300 5042500 3142900 252 1287 255 877;878;879;880 1318;1319;1320;1321;1322 1321 5 AEITFDDHK AGAGGLSIAVEGPSKAEITFDDHKNGSCGV VEGPSKAEITFDDHKNGSCGVSYIAQEPGN K A E H K N 1 0 0 2 0 0 1 0 1 1 0 1 0 1 0 0 1 0 0 0 0 0 9 0 1074.4982 O75369;A0A024R321;Q68CT4;E7EN95 O75369 2236 2244 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.0018448 122.19 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4851800 4851800 0 4851800 4851800 0 0 0 0 253 1199 256 881;882;883 1323;1324;1325 1324 3 AELEAQAATVK A E V K 4 0 0 0 0 1 2 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 11 0 1129.5979 REV__F8WBJ0 yes no 2 0.00088135 114.89 1 0.67777 0.86396 NaN 1 Median 0.67777 0.86396 NaN 1 0 Median NaN NaN NaN 0 0 Median 26848000 15727000 11122000 26848000 15727000 11122000 0 0 0 + 254 1839 257 884 1326 1326 1 AELEIQK PVAASRALPPLRAPRAELEIQKDALEPGQR LPPLRAPRAELEIQKDALEPGQRVVVVDDL R A E Q K D 1 0 0 0 0 1 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 7 0 829.45453 H3BQZ9;P07741;H3BQB1 H3BQZ9 81 87 APRT Adenine phosphoribosyltransferase yes no 2 0.010544 81.297 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11642000 11642000 0 11642000 11642000 0 0 0 0 255 1106 258 885 1327 1327 1 AELELELGR ILALKASFEKAAAGKAELELELGRIRSNAE KAAAGKAELELELGRIRSNAEDTLRSKEQA K A E G R I 1 1 0 0 0 0 3 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1028.5502 Q15149 Q15149 2079 2087 PLEC Plectin yes yes 2 0.004032 101.64 2 0.88133 1.1901 20.67 2 Median 0.88133 1.1901 20.67 2 0 Median NaN NaN NaN 0 0 Median 33798000 18328000 15470000 33798000 18328000 15470000 0 0 0 256 1507 259 886;887 1328;1329;1330 1328 3 AELFQQEQQSADK SDALMSPPPKSSLPKAELFQQEQQSADKPA PKAELFQQEQQSADKPASLPPASQASNHRD K A E D K P 2 0 0 1 0 4 2 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 13 0 1520.7107 Q9BTC0 Q9BTC0 1532 1544 DIDO1 Death-inducer obliterator 1 yes yes 2 0.050057 78.548 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 257 1713 260 888 1331 1331 1 AELFTQSCADLDK STTQTKAQRLFDANKAELFTQSCADLDKWL NKAELFTQSCADLDKWLHGLESQIQSDDYG K A E D K W 2 0 0 2 1 1 1 0 0 0 2 1 0 1 0 1 1 0 0 0 0 0 13 0 1496.6817 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24 B2ZZ89 1382 1394 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 3.2275E-20 186.87 4 0.63749 0.808 39.615 4 Median 0.63749 0.808 39.615 4 0 Median NaN NaN NaN 0 0 Median 26613000 14780000 11833000 26613000 14780000 11833000 0 0 0 258 346 261 889;890;891;892 1332;1333;1334;1335;1336 1334 5 AELGTDLLSQLSLEDQK EASLHAMESTRESLKAELGTDLLSQLSLED LGTDLLSQLSLEDQKRVDALNDEIRQLQQE K A E Q K R 1 0 0 2 0 2 2 1 0 0 5 1 0 0 0 2 1 0 0 0 0 0 17 0 1858.9524 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 779 795 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 3.1161E-05 91.307 3 1 1.1298 1.6994 42.372 4 Linear 0.65144 0.82936 10.281 3 0 Plateau 1.198 1.8457 NaN 1 0 Median 56415000 30192000 26223000 33804000 19935000 13869000 22611000 10257000 12354000 259 663 262 893;894;895;896 1337;1338;1339;1340;1341 1340 4 AELIVQPELK TIQELLQNCSDCLMRAELIVQPELKYGDGI DCLMRAELIVQPELKYGDGIQLTRSRELDE R A E L K Y 1 0 0 0 0 1 2 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 10 0 1138.6598 P15924;Q4LE79;B4E2A0;G1UI31;Q6ZP16 P15924 85 94 DSP;DSP variant protein Desmoplakin yes no 2 0.00045667 85.676 1 2 0.43073 0.59486 34.626 3 Median 0.27019 0.33744 NaN 1 0 Median 0.44061 0.61327 4.3104 2 0 Median 15933000 11488000 4445500 7794900 5973900 1821000 8138200 5513700 2624400 260 1270 263 897;898;899 1342;1343;1344 1342 3 AELLLLK PLSTPMPKKRGRKSKAELLLLKLSKDLDRP KKRGRKSKAELLLLKLSKDLDRPESQSPKR K A E L K L 1 0 0 0 0 0 1 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 7 0 798.52149 Q8WUA4;Q53QN0;A0A087WZD8 Q8WUA4 149 155 GTF3C2 General transcription factor 3C polypeptide 2 yes no 2 0.012738 108.98 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 261 1663 264 900;901;902 1345;1346;1347 1346 3 AELNEFLTR QISKKRKFVADGIFKAELNEFLTRELAEDG ADGIFKAELNEFLTRELAEDGYSGVEVRVT K A E T R E 1 1 1 0 0 0 2 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 9 0 1091.5611 P23396;Q53G83;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;H0YEU2;H0YF32;E9PQ96;E9PJH4;E9PK82;E9PQX2;H0YES8 P23396 19 27 RPS3 40S ribosomal protein S3 yes no 2 4.6766E-06 166.52 4 2 0.74083 1.017 52.661 6 Median 0.73167 1.0097 2.2553 4 0 Median 1.7278 2.7791 0.9631 2 0 Median 652720000 360730000 291990000 557830000 325630000 232200000 94893000 35106000 59786000 262 1293 265 903;904;905;906;907;908 1348;1349;1350;1351;1352;1353;1354;1355;1356;1357;1358;1359 1351 12 AELNSTTEELHK TQQLQEVKAKLQQCKAELNSTTEELHKYQK QCKAELNSTTEELHKYQKMLEPPPSAKPFT K A E H K Y 1 0 1 0 0 0 3 0 1 0 2 1 0 0 0 1 2 0 0 0 0 0 12 0 1370.6678 O95235 O95235 701 712 KIF20A Kinesin-like protein KIF20A yes yes 2;3 1.9547E-19 185.33 7 3 0.94297 1.1803 31.711 9 Median 0.96261 1.2189 5.3285 6 0 Median 0.41657 0.64736 4.1919 3 0 Median 300690000 172400000 128290000 228290000 121820000 106460000 72399000 50571000 21827000 263 1215 266 909;910;911;912;913;914;915;916;917;918 1360;1361;1362;1363;1364;1365;1366;1367;1368;1369;1370;1371;1372;1373;1374;1375 1363 16 AELQQEVEK RVKRVTQKEELEKQKAELQQEVEKLASENA ELEKQKAELQQEVEKLASENASMKLELDAL K A E E K L 1 0 0 0 0 2 3 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1072.5401 A0A024R8X1;O15525;I3L2F8 A0A024R8X1 84 92 hCG_1991559;MAFG Transcription factor MafG yes no 2 0.00082375 109.71 3 2 1.1858 1.5008 23.603 4 Median 1.1935 1.5107 19.553 3 0 Plateau 1.2954 1.9064 NaN 1 0 Median 37041000 19319000 17722000 24779000 11509000 13270000 12262000 7810100 4452000 264 207 267 919;920;921;922;923 1376;1377;1378;1379;1380;1381 1377 6 AELYKEPTNEELNR EPPAKGLLQPVKLSRAELYKEPTNEELNRL RAELYKEPTNEELNRLRETEILFHSSLLRL R A E N R L 1 1 2 0 0 0 4 0 0 0 2 1 0 0 1 0 1 0 1 0 0 0 14 1 1704.8319 Q9H6R4;A0A0A0MRW6;B4DF80 Q9H6R4 58 71 NOL6 Nucleolar protein 6 yes no 2;3 1.7172E-05 124.6 2 3 0.99429 1.3766 13.862 5 Median 1.1289 1.5178 13.818 2 0 Median 0.87051 1.3119 11.52 3 0 Median 32743000 16760000 15983000 14327000 7741700 6584900 18416000 9017900 9398500 265 1738 268 924;925;926;927;928 1382;1383;1384;1385;1386;1387;1388 1382 7 AENFFILR EKILCHKFMRFMMMRAENFFILRRKPVEII MRFMMMRAENFFILRRKPVEIIL_______ R A E L R R 1 1 1 0 0 0 1 0 0 1 1 0 0 2 0 0 0 0 0 0 0 0 8 0 1008.5393 F8WDD7;F8WCF6;A0A0A6YYG9;P59998;R4GN08 F8WDD7 98 105 ARPC4;ARPC4-TTLL3 Actin-related protein 2/3 complex subunit 4 yes no 2 0.010275 101.28 2 1.162 1.5738 8.6319 2 Median 1.162 1.5738 8.6319 2 0 Median NaN NaN NaN 0 0 Median 10869000 4856300 6013100 10869000 4856300 6013100 0 0 0 266 407 269 929;930 1389;1390 1389 2 AENKVENETDEGDKAQDGENEK EEKMEADPDGQQPEKAENKVENETDEGDKA ETDEGDKAQDGENEKNSEKEQDSEVSEDTK K A E E K N 2 0 3 3 0 1 6 2 0 0 0 3 0 0 0 0 1 0 0 1 0 0 22 2 2448.0524 Q58EY4;Q92922;Q05CR1;B4DYQ1 Q58EY4 793 814 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 3 5.7487E-26 145.19 2 0.91755 1.0289 NaN 1 Median 0.91755 1.0289 NaN 1 0 Median NaN NaN NaN 0 0 Median 1157800 618280 539520 1157800 618280 539520 0 0 0 267 1549 270 931;932 1391;1392;1393 1392 3 AENLVLSTNLR SSKMSELQTYVDSLKAENLVLSTNLRNFQG DSLKAENLVLSTNLRNFQGDLVKEMQLGLE K A E L R N 1 1 2 0 0 0 1 0 0 0 3 0 0 0 0 1 1 0 0 1 0 0 11 0 1228.6776 P49454 P49454 1444 1454 CENPF Centromere protein F yes no 2 0.003655 58.676 2 0.97603 1.3877 1.2216 2 Median NaN NaN NaN 0 0 Median 0.97603 1.3877 1.2216 2 0 Median 16323000 8919600 7402900 0 0 0 16323000 8919600 7402900 268 1351 271 933;934 1394;1395;1396;1397 1394 4 AENNSEVGASGYGVPGPTWDR PTTMGGPLPPHLALKAENNSEVGASGYGVP VGASGYGVPGPTWDRGANLKDYYSRKEEQE K A E D R G 2 1 2 1 0 0 2 4 0 0 0 0 0 0 2 2 1 1 1 2 0 0 21 0 2161.9665 Q08211;Q58F26;Q6PJK6 Q08211 121 141 DHX9 ATP-dependent RNA helicase A yes no 2 0.00098638 39.629 2 0.43547 0.65334 6.105 2 Median NaN NaN NaN 0 0 Median 0.43547 0.65334 6.105 2 0 Median 40566000 27627000 12940000 0 0 0 40566000 27627000 12940000 269 1448 272 935;936 1398;1399;1400 1400 3 AENPYLFLR TGHGNLRPRKTRPLKAENPYLFLRGLPYLV KTRPLKAENPYLFLRGLPYLVNEDDVRVFF K A E L R G 1 1 1 0 0 0 1 0 0 0 2 0 0 1 1 0 0 0 1 0 0 0 9 0 1121.5869 B9ZVT1;Q8IXT5 B9ZVT1 152 160 RBM12B RNA-binding protein 12B yes no 2 0.0057112 61.999 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3093300 3093300 0 0 0 0 3093300 3093300 0 270 931 273 937;938;939 1401;1402;1403 1403 3 AENSSLNLIGK SVGLVVGNSQVAFEKAENSSLNLIGKAKTK AFEKAENSSLNLIGKAKTKENRQSIINPDW K A E G K A 1 0 2 0 0 0 1 1 0 1 2 1 0 0 0 2 0 0 0 0 0 0 11 0 1144.6088 B4DGR3;I3L0N3;B7Z5J7;P46459;B7Z9U2;B4DH19;B4DSK5 B4DGR3 146 156 NSF Vesicle-fusing ATPase yes no 2 0.020884 89.08 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 271 805 274 940 1404 1404 1 AENYDIPSADR SNFHMDFIVAASNLRAENYDIPSADRHKSK SNLRAENYDIPSADRHKSKLIAGKIIPAIA R A E D R H 2 1 1 2 0 0 1 0 0 1 0 0 0 0 1 1 0 0 1 0 0 0 11 0 1249.5575 A0A024R1A3;P22314;Q5JRR6;B3KUJ2;B4DDE4;B4DL67;Q8WY81 A0A024R1A3 870 880 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 0.0033017 60.398 1 0.64502 0.8758 NaN 1 Median 0.64502 0.8758 NaN 1 0 Median NaN NaN NaN 0 0 Median 5351800 2822500 2529300 5351800 2822500 2529300 0 0 0 272 55 275 941 1405 1405 1 AEPAAPPAAPSTPAPPPAVPK KRLDEKFGAPDKRLKAEPAAPPAAPSTPAP PAAPSTPAPPPAVPKELPAPPAPPPASAPT K A E P K E 7 0 0 0 0 0 1 0 0 0 0 1 0 0 9 1 1 0 0 1 0 0 21 0 1933.0309 P48634 P48634 506 526 PRRC2A Protein PRRC2A yes yes 2 0.0011324 80.706 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1505400 0 1505400 1505400 0 1505400 0 0 0 273 1348 276 942;943 1406;1407 1406 2 AEPEAGEEQAGDDRDSGGPVLQFDYEAVANR SQKRSEKPPAGSICRAEPEAGEEQAGDDRD GGPVLQFDYEAVANRLFEMASRQSTPSQNR R A E N R L 5 2 1 4 0 2 5 4 0 0 1 0 0 1 2 1 0 0 1 2 0 0 31 1 3291.4552 Q6PJJ2;P56182;B4DZM3;Q53FR7;Q96J73 Q6PJJ2 281 311 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 3 6.7169E-14 99.753 3 2 0.65736 0.95229 1.0077 4 Median 0.70248 0.95852 1.4926 2 0 Median 0.6146 0.95207 0.60288 2 0 Median 194350000 124780000 69577000 119450000 75782000 43666000 74905000 48994000 25912000 274 1381 277 944;945;946;947;948 1408;1409;1410;1411;1412;1413;1414;1415;1416;1417;1418 1410 11 AEPEDHYFLLTEPPLNTPENR LMERFMEQVIFKYLRAEPEDHYFLLTEPPL YFLLTEPPLNTPENREYTAEIMFESFNVPG R A E N R E 1 1 2 1 0 0 4 0 1 0 3 0 0 1 4 0 2 0 1 0 0 0 21 0 2481.1812 A0A024RAI1;P61158;B4DXW1;Q59FV6;B4DT29;F8WDR7 A0A024RAI1 103 123 ACTR3 Actin-related protein 3 yes no 3 7.0898E-05 77.357 4 1.1836 1.5843 5.6285 4 Median 1.1836 1.5843 5.6285 4 0 Median NaN NaN NaN 0 0 Median 58205000 27106000 31100000 58205000 27106000 31100000 0 0 0 275 243 278 949;950;951;952 1419;1420;1421;1422;1423;1424 1420 6 AEPGEGTRPATVGDSSAR SGEKPPAGSEQDGWKAEPGEGTRPATVGDS GEGTRPATVGDSSARPARRVLLPTPPCGAL K A E A R P 3 2 0 1 0 0 2 3 0 0 0 0 0 0 2 2 2 0 0 1 0 0 18 1 1756.834 Q9BTC0 Q9BTC0 1636 1653 DIDO1 Death-inducer obliterator 1 yes yes 3 0.00059873 40.349 1 2 0.51539 0.68406 27.146 3 Median 0.79721 1.0522 NaN 1 0 Median 0.48479 0.66015 5.0317 2 0 Median 17672000 11626000 6046300 5172700 2822500 2350200 12500000 8803500 3696100 276 1713 279 953;954;955 1425;1426;1427;1428;1429 1429 5 AEPGEGTRPATVGDSSARPAR SGEKPPAGSEQDGWKAEPGEGTRPATVGDS TRPATVGDSSARPARRVLLPTPPCGALQPG K A E A R R 4 3 0 1 0 0 2 3 0 0 0 0 0 0 3 2 2 0 0 1 0 0 21 2 2081.025 Q9BTC0 Q9BTC0 1636 1656 DIDO1 Death-inducer obliterator 1 yes yes 3 0.0059753 28.65 1 0.6183 0.72429 NaN 1 Median NaN NaN NaN 0 0 Median 0.6183 0.72429 NaN 1 0 Median 6753900 4678200 2075700 0 0 0 6753900 4678200 2075700 277 1713 280 956 1430 1430 1 AEPGFEPADCK LHPPPPPPPPPAELKAEPGFEPADCKRKEE AELKAEPGFEPADCKRKEEAGAPGGGAGMA K A E C K R 2 0 0 1 1 0 2 1 0 0 0 1 0 1 2 0 0 0 0 0 0 0 11 0 1219.5179 P17676 P17676 175 185 CEBPB CCAAT/enhancer-binding protein beta yes yes 2 0.04389 36.424 1 1.5875 2.2163 NaN 1 Median NaN NaN NaN 0 0 Median 1.5875 2.2163 NaN 1 0 Median 4511700 1917200 2594500 0 0 0 4511700 1917200 2594500 278 1277 281 957 1431 1431 1 AEPSFYPR TVIGDTVTGLLERCKAEPSFYPRNCLMQLI GLLERCKAEPSFYPRNCLMQLIQTHVLSYS K A E P R N 1 1 0 0 0 0 1 0 0 0 0 0 0 1 2 1 0 0 1 0 0 0 8 0 965.46068 Q9H8H0;J3QR28 Q9H8H0 446 453 NOL11 Nucleolar protein 11 yes no 2 0.0078201 79.597 3 0.84593 1.1401 3.6741 3 Median 0.84593 1.1401 3.6741 3 0 Median NaN NaN NaN 0 0 Median 77365000 39313000 38052000 77365000 39313000 38052000 0 0 0 279 1743 282 958;959;960 1432;1433;1434 1434 3 AEPTAAPHPVLK EQRLLQQGTAPAQAKAEPTAAPHPVLKQVI QAKAEPTAAPHPVLKQVIKPRRKLAFRSGE K A E L K Q 3 0 0 0 0 0 1 0 1 0 1 1 0 0 3 0 1 0 0 1 0 0 12 0 1229.6768 A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7;B4E0Q6 A0A024R7K7 488 499 GATAD2A Transcriptional repressor p66-alpha yes no 2;3 0.0012237 76.465 1 4 1.2334 1.8378 13.266 5 Plateau 1.0291 1.3537 NaN 1 0 Median 1.2351 1.8844 3.4008 4 0 Linear 35558000 16252000 19307000 5431100 2849400 2581700 30127000 13402000 16725000 280 179 283 961;962;963;964;965 1435;1436;1437;1438;1439;1440;1441 1439 7 AEPVEVVAPR LFLAHILSPWGAEVKAEPVEVVAPRGKSGA GAEVKAEPVEVVAPRGKSGAALSKKSKGQV K A E P R G 2 1 0 0 0 0 2 0 0 0 0 0 0 0 2 0 0 0 0 3 0 0 10 0 1065.5819 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 487 496 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 4.934E-05 108.74 3 3 1.0972 1.5143 2.7404 2 Median 1.0972 1.5143 2.7404 2 0 Median NaN NaN NaN 0 0 Median 574810000 411820000 162990000 413740000 250750000 162990000 161070000 161070000 0 281 107 284 966;967;968;969;970;971 1442;1443;1444;1445;1446;1447;1448;1449 1446 8 AEPYCSVLPGFTFIQHLPLSER VLVKNCAVEFNFGQRAEPYCSVLPGFTFIQ LPGFTFIQHLPLSERIRGTVGPKSKAECEI R A E E R I 1 1 0 0 1 1 2 1 1 1 3 0 0 2 3 2 1 0 1 1 0 0 22 0 2560.2784 M0R3F1;A8K3W4;A0A024R0J9;A0A0A0MRA5;B7Z4B8;A8K6U7;Q9BUJ2;A8K5K0;M0QYZ0 M0R3F1 236 257 HNRNPUL1;HNRPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 3 5.5217E-09 105.52 4 0.48477 0.65004 7.0121 4 Median 0.48477 0.65004 7.0121 4 0 Median NaN NaN NaN 0 0 Median 39512000 25475000 14038000 39512000 25475000 14038000 0 0 0 282 39 285 972;973;974;975 1450;1451;1452;1453;1454;1455;1456;1457;1458;1459;1460 1455 11 AEQAFQASQIK QLENNLEEFKQKLCRAEQAFQASQIKENEL KLCRAEQAFQASQIKENELRRSMEEMKKEN R A E I K E 3 0 0 0 0 3 1 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 11 0 1219.6197 P49454 P49454 463 473 CENPF Centromere protein F yes yes 2 4.3793E-14 188.91 4 2 1.0564 1.3983 17.526 6 Median 0.99557 1.2638 20.09 4 0 Median 1.0793 1.5261 8.9621 2 0 Median 32854000 15012000 17843000 22265000 10209000 12055000 10590000 4802600 5787200 283 1351 286 976;977;978;979;980;981 1461;1462;1463;1464;1465;1466;1467;1468;1469;1470 1463 10 AEQDITTLEQSISR DANRQISEYKFKLSKAEQDITTLEQSISRL KAEQDITTLEQSISRLEGQVLRYKTAAENA K A E S R L 1 1 0 1 0 2 2 0 0 2 1 0 0 0 0 2 2 0 0 0 0 0 14 0 1589.7897 A0A1S5UZ17;A0A024R2K4;Q9Y608 A0A1S5UZ17 353 366 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 yes no 2 7.6976E-06 122.39 1 0.91612 1.2846 NaN 1 Median 0.91612 1.2846 NaN 1 0 Median NaN NaN NaN 0 0 Median 2012900 947980 1064900 2012900 947980 1064900 0 0 0 284 87 287 982 1471 1471 1 AEQDVENDLLDYDEEEEPQAPQESTPAPPKK ______________________________ EPQAPQESTPAPPKKDIKGSYVSIHSSGFR M A E K K D 3 0 1 4 0 3 7 0 0 0 2 2 0 0 5 1 1 0 1 1 0 0 31 1 3510.5798 O00148;K7EQN7;A0A024R7H0;K7EN69;K7ENP6;K7EL56;K7EIL8;B4DF34 O00148 2 32 DDX39A;DDX39 ATP-dependent RNA helicase DDX39A yes no 3 0.00017883 51.234 1 0.40936 0.50973 NaN 1 Median 0.40936 0.50973 NaN 1 0 Median NaN NaN NaN 0 0 Median 2625900 2085700 540180 2625900 2085700 540180 0 0 0 285 1164 288 983 1472 1472 1 AEQEEYVQEGIR VNEKLQQIFIELTLKAEQEEYVQEGIRWTP TLKAEQEEYVQEGIRWTPIEYFNNKIVCDL K A E I R W 1 1 0 0 0 2 4 1 0 1 0 0 0 0 0 0 0 0 1 1 0 0 12 0 1449.6736 Q4KMR3;Q12965;H0YLE5;Q6ZNI9;O00160;M0QXU2 Q4KMR3 423 434 MYO1E;FLJ00395;MYO1F Unconventional myosin-Ie;Unconventional myosin-If yes no 2 9.2747E-16 164.66 4 1 0.51792 0.6884 90.286 3 Median 0.46907 0.62582 13.478 2 0 Median 2.2087 2.9635 NaN 1 0 Median 40749000 16532000 24217000 35217000 14285000 20932000 5532700 2247100 3285600 286 1459 289 984;985;986;987;988 1473;1474;1475;1476;1477;1478;1479;1480;1481 1480 9 AEQENNFPTSSIAFLGQNER GNWVRYCIFDLATGKAEQENNFPTSSIAFL NFPTSSIAFLGQNERNVAIFTAGQESPIIL K A E E R N 2 1 3 0 0 2 3 1 0 1 1 0 0 2 1 2 1 0 0 0 0 0 20 0 2251.0505 E7EMW7;O95071 E7EMW7 772 791 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 2 0.00010883 100.41 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 614180 614180 0 614180 614180 0 0 0 0 287 1008 290 989 1482 1482 1 AEQFYCGDTEGKK SHLEAADPVVMGKTKAEQFYCGDTEGKKVM TKAEQFYCGDTEGKKVMSILLHGDAAFAGQ K A E K K V 1 0 0 1 1 1 2 2 0 0 0 2 0 1 0 0 1 0 1 0 0 0 13 1 1531.6613 B4DF00;E9PDF2;E9PCR7;Q02218;A0A0D9SFS3;A0A140VJQ5;B4DZ95;B4E3E9;B4DH65;E9PFG7;B4DK55;A2VCT2;A2VCT3 B4DF00 341 353 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 2 0.034736 87.568 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 288 800 291 990 1483 1483 1 AEQINQAAGEASAVLAK EGKKQAQILASEAEKAEQINQAAGEASAVL QINQAAGEASAVLAKAKAKAEAIRILAAAL K A E A K A 6 0 1 0 0 2 2 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 17 0 1669.8635 A0A087WYB4;Q9UJZ1;F2Z2I8;Q6ZNW0 A0A087WYB4 188 204 STOML2 Stomatin-like protein 2, mitochondrial yes no 2 1.3594E-82 231.69 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7165300 7165300 0 7165300 7165300 0 0 0 0 289 362 292 991;992 1484;1485 1484 2 AERDSALETLQGQLEEK ADSLERSLEAERASRAERDSALETLQGQLE RDSALETLQGQLEEKAQELGHSQSALASAQ R A E E K A 2 1 0 1 0 2 4 1 0 0 3 1 0 0 0 1 1 0 0 0 0 0 17 1 1915.9487 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1158 1174 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 6.4609E-06 48.288 3 0.71925 0.94331 8.3815 3 Median 0.71925 0.94331 8.3815 3 0 Median NaN NaN NaN 0 0 Median 43361000 25736000 17625000 43361000 25736000 17625000 0 0 0 290 148;1499 293 993;994;995 1486;1487;1488;1489 1488 4 AERPEDLNLPNAVITR ______________________________ ERPEDLNLPNAVITRIIKEALPDGVNISKE M A E T R I 2 2 2 1 0 0 2 0 0 1 2 0 0 0 2 0 1 0 0 1 0 0 16 1 1806.9588 A0A024R829;Q9NRF9 A0A024R829 2 17 POLE3 DNA polymerase epsilon subunit 3 yes no 2 0.00011863 82.908 4 0.40966 0.54626 13.299 4 Median 0.40966 0.54626 13.299 4 0 Median NaN NaN NaN 0 0 Median 29351000 18442000 10909000 29351000 18442000 10909000 0 0 0 291 191 294 996;997;998;999 1490;1491;1492;1493 1492 4 AESCGSGNSTGYQIR RISAISVAERVAAERAESCGSGNSTGYQIR AESCGSGNSTGYQIRLQSRLPRKQGSILYC R A E I R L 1 1 1 0 1 1 1 3 0 1 0 0 0 0 0 3 1 0 1 0 0 0 15 0 1585.6791 E7EWK3;B7Z8P5;Q9H2U1 E7EWK3 195 209 DHX36 ATP-dependent RNA helicase DHX36 yes no 2 0.00015469 110.31 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 292 919 295 1000;1001 1494;1495 1494 2 AESEASLLNVSTPK KTSIPVKDIKLTQSKAESEASLLNVSTPKS KAESEASLLNVSTPKSTRRSGRISSTPTTE K A E P K S 2 0 1 0 0 0 2 0 0 0 2 1 0 0 1 3 1 0 0 1 0 0 14 0 1444.7409 Q96QE3;H0UIC2;A0A075B754 Q96QE3 579 592 ATAD5 ATPase family AAA domain-containing protein 5 yes no 2 1.7073E-10 111.63 4 1 1.2216 1.5643 37.875 4 Median 0.94415 1.1616 34.766 3 0 Median 1.5807 2.3285 NaN 1 0 Median 18679000 7898400 10781000 10130000 4437400 5692200 8549400 3461000 5088400 293 1698 296 1002;1003;1004;1005;1006 1496;1497;1498;1499;1500;1501;1502;1503 1501 8 AESGDSLGSEDRDLLYSIDAYR ESPKPGKFQRTRVPRAESGDSLGSEDRDLL GSEDRDLLYSIDAYRSQRFKETERPSIKQV R A E Y R S 2 2 0 4 0 0 2 2 0 1 3 0 0 0 0 4 0 0 2 0 0 0 22 1 2431.1139 B4DSL6;A8K5D9;A0A024RA49;Q9NQW6 B4DSL6 533 554 ANLN Actin-binding protein anillin yes no 3 3.2583E-05 72.21 3 0.87571 1.1996 25.328 3 Median 0.87571 1.1996 25.328 3 0 Median NaN NaN NaN 0 0 Median 29993000 17629000 12364000 29993000 17629000 12364000 0 0 0 294 235 297 1007;1008;1009 1504;1505;1506;1507 1506 4 AESISEEADSEPGR CNRTAGPSTSVQKLKAESISEEADSEPGRS KAESISEEADSEPGRSGGRKYNTFHKNASF K A E G R S 2 1 0 1 0 0 4 1 0 1 0 0 0 0 1 3 0 0 0 0 0 0 14 0 1475.6376 Q9NSI6 Q9NSI6 1784 1797 BRWD1 Bromodomain and WD repeat-containing protein 1 yes yes 2 0.0043761 53.08 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 926740 0 926740 926740 0 926740 0 0 0 295 1758 298 1010 1508 1508 1 AESLIGVYPEQGDCVISK FQAIVISLKEEFYTKAESLIGVYPEQGDCV LIGVYPEQGDCVISKVLTFDLTKYPDANPN K A E S K V 1 0 0 1 1 1 2 2 0 2 1 1 0 0 1 2 0 0 1 2 0 0 18 0 1963.9561 Q14683;G8JLG1 Q14683 1197 1214 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 6.0228E-13 150.11 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3082900 0 3082900 3082900 0 3082900 0 0 0 296 1492 299 1011;1012 1509;1510 1510 2 AESLQQEVEALK AIEMATLDKEMAEERAESLQQEVEALKERV EERAESLQQEVEALKERVDELTTDLEILKA R A E L K E 2 0 0 0 0 2 3 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 12 0 1343.6933 Q6AWB3;Q6AWB1;E7EX90;Q6MZZ3;Q14203;Q59F36 Q6AWB3 281 292 DKFZp686E191;DKFZp686E0752;DCTN1;DKFZp686I0746 Dynactin subunit 1 yes no 2 0.011778 51.276 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4700300 4700300 0 0 0 0 4700300 4700300 0 297 1018 300 1013 1511 1511 1 AESPESSAIESTQSTPQK SKSKQHRVSRRAQQRAESPESSAIESTQST PESSAIESTQSTPQKGRGRPSKTPSPSQPK R A E Q K G 2 0 0 0 0 2 3 0 0 1 0 1 0 0 2 5 2 0 0 0 0 0 18 0 1875.8698 Q9NTI5 Q9NTI5 1356 1373 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2 0.0057742 31.071 1 0.49207 0.65748 NaN 1 Median NaN NaN NaN 0 0 Median 0.49207 0.65748 NaN 1 0 Median 3341500 2173800 1167700 0 0 0 3341500 2173800 1167700 298 1759 301 1014 1512 1512 1 AESTLQNSSSAVHTESNK CRRIIPPKMKNTSSKAESTLQNSSSAVHTE TLQNSSSAVHTESNKLQPKRTADAMNLSVD K A E N K L 2 0 2 0 0 1 2 0 1 0 1 1 0 0 0 5 2 0 0 1 0 0 18 0 1888.8763 A0A0C4DFX7;Q9H967;C9JE56 A0A0C4DFX7 41 58 WDR76 WD repeat-containing protein 76 yes no 2;3 1.1178E-18 147.39 4 4 0.6524 0.92548 18.68 8 Median 0.79127 0.99956 25.287 4 0 Median 0.62128 0.90714 4.538 4 0 Median 47438000 29377000 18061000 21565000 12772000 8793400 25873000 16606000 9267500 299 421 302 1015;1016;1017;1018;1019;1020;1021;1022 1513;1514;1515;1516;1517;1518;1519;1520;1521;1522;1523;1524 1514 12 AETDHLFDLSR NKEYQLYLHDDAWTKAETDHLFDLSRRFDL AWTKAETDHLFDLSRRFDLRFVVIHDRYDH K A E S R R 1 1 0 2 0 0 1 0 1 0 2 0 0 1 0 1 1 0 0 0 0 0 11 0 1302.6204 B4DQG8;Q9NPF5;Q5TG40;Q5TG38;Q5TG39;Q5TG37 B4DQG8 145 155 DMAP1 DNA methyltransferase 1-associated protein 1 yes no 3 0.010943 64.224 1 0.62545 0.82755 NaN 1 Median 0.62545 0.82755 NaN 1 0 Median NaN NaN NaN 0 0 Median 3472200 2173000 1299200 3472200 2173000 1299200 0 0 0 300 850 303 1023 1525 1525 1 AETECQNTEYQQLLDIK QAQISALEEQLQQIRAETECQNTEYQQLLD TECQNTEYQQLLDIKIRLENEIQTYRSLLE R A E I K I 1 0 1 1 1 3 3 0 0 1 2 1 0 0 0 0 2 0 1 0 0 0 17 0 2081.9575 CON__P13645;P13645 CON__P13645 423 439 KRT10 Keratin, type I cytoskeletal 10 yes no 2 3.1996E-217 322.31 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 157230000 157230000 0 157230000 157230000 0 0 0 0 + 301 960 304 1024;1025;1026;1027 1526;1527;1528;1529 1528 4 AETLEFNDVYQEVK ______________________________ MAETLEFNDVYQEVKGSMNDGRLRLSRQGI M A E V K G 1 0 1 1 0 1 3 0 0 0 1 1 0 1 0 0 1 0 1 2 0 0 14 0 1683.7992 A0A024R4Z6;Q08945 A0A024R4Z6 2 15 SSRP1 FACT complex subunit SSRP1 yes no 2 1.0198E-60 234.65 4 2 0.80329 1.0426 9.6644 6 Median 0.8065 1.0223 3.5176 4 0 Median 0.75401 1.2061 6.5865 2 0 Median 296240000 163160000 133080000 202730000 111990000 90739000 93511000 51166000 42344000 302 132 305 1028;1029;1030;1031;1032;1033 1530;1531;1532;1533;1534;1535;1536;1537;1538;1539;1540;1541;1542 1530 13 AETQGANHTPVISAHQTR ERPGTRVSERLRGARAETQGANHTPVISAH QGANHTPVISAHQTRSTTTPPRCSPARERV R A E T R S 3 1 1 0 0 2 1 1 2 1 0 0 0 0 1 1 3 0 0 1 0 0 18 0 1916.9453 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2 A0A0A0MS59 2145 2162 SRCAP Helicase SRCAP yes no 3 0.00038478 38.417 2 0.58599 0.74205 7.8237 2 Median NaN NaN NaN 0 0 Median 0.58599 0.74205 7.8237 2 0 Median 3742300 2188300 1554000 0 0 0 3742300 2188300 1554000 303 394 306 1034;1035 1543;1544 1544 2 AETSEGSGSAPAVPEASASPK QPSAHHSAEPAEAGKAETSEGSGSAPAVPE SGSAPAVPEASASPKQRRSIIRDRGPMYDD K A E P K Q 5 0 0 0 0 0 3 2 0 0 0 1 0 0 3 5 1 0 0 1 0 0 21 0 1928.8963 A0A140VKC4;D9ZNA4;D5L9I5;D3YJ43;D0UU70;A8K079;E9LUH4;P51608;E1B2J3;E9LUH3;C6KG45;D6QZ43;A0A087X1U4;C6KG44;A0A087WVW7;B5MCB4;I6LM39;A0A0S2Z401;A0A0D9SFX7;D5L9I4;A0A0S2Z3U3;A0A075BPH5 A0A140VKC4 74 94 MECP2 Methyl-CpG-binding protein 2 yes no 2 0.008499 111.81 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 304 512 307 1036;1037 1545;1546 1546 2 AEVEQVELPDGK KRKAGSTSWTGFQTKAEVEQVELPDGKKRR QTKAEVEQVELPDGKKRRKVLALPSHRGPK K A E G K K 1 0 0 1 0 1 3 1 0 0 1 1 0 0 1 0 0 0 0 2 0 0 12 0 1312.6511 A0A024R753;Q9NW13 A0A024R753 654 665 RBM28 RNA-binding protein 28 yes no 2 0.031789 47.302 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6482300 6482300 0 0 0 0 6482300 6482300 0 305 169 308 1038;1039 1547;1548 1548 2 AEVEQVELPDGKK KRKAGSTSWTGFQTKAEVEQVELPDGKKRR TKAEVEQVELPDGKKRRKVLALPSHRGPKI K A E K K R 1 0 0 1 0 1 3 1 0 0 1 2 0 0 1 0 0 0 0 2 0 0 13 1 1440.746 A0A024R753;Q9NW13 A0A024R753 654 666 RBM28 RNA-binding protein 28 yes no 2 0.0034999 59.542 1 1.0026 1.2451 NaN 1 Median 1.0026 1.2451 NaN 1 0 Median NaN NaN NaN 0 0 Median 9103900 4669500 4434500 9103900 4669500 4434500 0 0 0 306 169 309 1040 1549;1550 1549 2 AEVLISTVGPEDCVVPFLTRPK GCLPVLAAAGRARGRAEVLISTVGPEDCVV VGPEDCVVPFLTRPKVPVLQLDSGNYLFST R A E P K V 1 1 0 1 1 0 2 1 0 1 2 1 0 1 3 1 2 0 0 4 0 0 22 1 2426.2879 A8K492;P56192;A0A024RBA2;F5H2V6;F8VS26;F8W0M7;F8W0S4;F8VZZ9 A8K492 26 47 MARS Methionine--tRNA ligase, cytoplasmic yes no 3 0.0031714 28.505 1 0.62982 0.81454 NaN 1 Median 0.62982 0.81454 NaN 1 0 Median NaN NaN NaN 0 0 Median 9170900 6030700 3140200 9170900 6030700 3140200 0 0 0 307 602 310 1041 1551 1551 1 AEVQVLVLDGR ______________________________ ______________________________ M A E G R G 1 1 0 1 0 1 1 1 0 0 2 0 0 0 0 0 0 0 0 3 0 0 11 0 1197.6717 Q53H34;P40429;Q5QTS3;B4DNC8;M0QZU1;A0A096LPE0 Q53H34 2 12 RPL13A 60S ribosomal protein L13a yes no 2 6.9164E-06 126.03 6 0.76447 1.0226 14.075 6 Median 0.76447 1.0226 14.075 6 0 Median NaN NaN NaN 0 0 Median 87884000 48549000 39334000 87884000 48549000 39334000 0 0 0 308 1332 311;312 1042;1043;1044;1045;1046;1047 1552;1553;1554;1555;1556;1557;1558;1559;1560 1555 9 AEVVETTQVYTEEETR PETGLRLLPLKGAEKAEVVETTQVYTEEET EVVETTQVYTEEETRRAFEETQIDIPGGGS K A E T R R 1 1 0 0 0 1 5 0 0 0 0 0 0 0 0 0 4 0 1 3 0 0 16 0 1882.8796 Q15149;D3DWL0;Q96IE3 Q15149 3686 3701 PLEC;PLEC1 Plectin yes no 2 6.3136E-06 141.58 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 697060 697060 0 697060 697060 0 0 0 0 309 1507 313 1048 1561 1561 1 AEVVETTQVYTEEETRR PETGLRLLPLKGAEKAEVVETTQVYTEEET VVETTQVYTEEETRRAFEETQIDIPGGGSH K A E R R A 1 2 0 0 0 1 5 0 0 0 0 0 0 0 0 0 4 0 1 3 0 0 17 1 2038.9807 Q15149;D3DWL0;Q96IE3 Q15149 3686 3702 PLEC;PLEC1 Plectin yes no 3 1.1699E-05 56.959 1 0.71096 0.95422 NaN 1 Median 0.71096 0.95422 NaN 1 0 Median NaN NaN NaN 0 0 Median 33872000 21007000 12865000 33872000 21007000 12865000 0 0 0 310 1507 314 1049 1562;1563 1563 2 AEVVQVIR RRAENLKRRLENERKAEVVQVIRNPAKLKR RLENERKAEVVQVIRNPAKLKRAKKKQLRS K A E I R N 1 1 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 3 0 0 8 0 912.53927 Q9H6F5 Q9H6F5 316 323 CCDC86 Coiled-coil domain-containing protein 86 yes yes 2 0.0026273 107.43 2 2 0.66071 0.96415 2.7523 4 Median 0.71559 0.96415 0.90759 2 0 Median 0.60642 0.95894 4.6485 2 0 Median 116130000 68311000 47815000 47253000 26992000 20261000 68873000 41319000 27554000 311 1737 315 1050;1051;1052;1053 1564;1565;1566;1567;1568;1569;1570 1569 7 AFAHITGGGLLENIPR YSHSLLPVLRSGHVKAFAHITGGGLLENIP FAHITGGGLLENIPRVLPEKLGVDLDAQTW K A F P R V 2 1 1 0 0 0 1 3 1 2 2 0 0 1 1 0 1 0 0 0 0 0 16 0 1664.8998 Q3B7A7;Q59HH3;P22102;B4DJ93 Q3B7A7 677 692 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 3 0.0086158 36.638 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8154700 0 8154700 0 0 0 8154700 0 8154700 312 1289 316 1054 1571 1571 1 AFALNDLDDYEK RLFVYDVFWLRFSNRAFALNDLDDYEKHFT SNRAFALNDLDDYEKHFTVMNYDPDVVLKQ R A F E K H 2 0 1 3 0 0 1 0 0 0 2 1 0 1 0 0 0 0 1 0 0 0 12 0 1412.646 A0A024R4U3;Q14166 A0A024R4U3 499 510 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes no 2 0.0017486 59.908 1 0.57553 0.74745 NaN 1 Median 0.57553 0.74745 NaN 1 0 Median NaN NaN NaN 0 0 Median 4856300 2472700 2383700 4856300 2472700 2383700 0 0 0 313 127 317 1055 1572 1572 1 AFANLRK ______________________________ ______________________________ M A F R K V 2 1 1 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 7 1 818.47627 O43175;V9HW79 O43175 2 8 PHGDH;HEL-S-113 D-3-phosphoglycerate dehydrogenase yes no 2 0.044151 44.611 1 0.6012 0.77697 NaN 1 Median 0.6012 0.77697 NaN 1 0 Median NaN NaN NaN 0 0 Median 8920800 5820200 3100500 8920800 5820200 3100500 0 0 0 314 1182 318 1056 1573 1573 0 AFASLR KEKARVITEEEKNFKAFASLRMARANARLF ITEEEKNFKAFASLRMARANARLFGIRAKR K A F L R M 2 1 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 6 0 663.37041 Q6NZ55;A8K4C8;P26373;O60250;H3BUK8;J3KS98 Q6NZ55 178 183 RPL13 60S ribosomal protein L13 yes no 2 0.027549 148.12 2 0.75285 1.0334 3.9461 2 Median 0.75285 1.0334 3.9461 2 0 Median NaN NaN NaN 0 0 Median 274740000 154090000 120650000 274740000 154090000 120650000 0 0 0 315 604 319 1057;1058 1574;1575 1574 2 AFAVGVQQVLLK NVSKEYNEFAEVFLKAFAVGVQQVLLKVLY FLKAFAVGVQQVLLKVLYQYKEKQYMAPRV K A F L K V 2 0 0 0 0 2 0 1 0 0 2 1 0 1 0 0 0 0 0 3 0 0 12 0 1271.7602 O95373 O95373 295 306 IPO7 Importin-7 yes yes 2 3.4232E-08 127.46 4 1 0.48545 0.62313 71.555 5 Median 0.47978 0.61984 8.797 4 0 Median 2.2667 3.0003 NaN 1 0 Median 27626000 16388000 11238000 24778000 15774000 9003800 2847700 614020 2233700 316 1219 320 1059;1060;1061;1062;1063 1576;1577;1578;1579;1580;1581;1582 1580 7 AFAVQSAVR LQLGDEEDARKRNPKAFAVQSAVRMARSFH RKRNPKAFAVQSAVRMARSFHRTQDLKTKK K A F V R M 3 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 9 0 947.51886 Q14692 Q14692 44 52 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 1.0417E-05 106.04 4 2 0.85585 1.2325 24.141 4 Median 1.1844 1.5859 25.94 2 0 Median 0.74067 1.1426 1.0021 2 0 Median 119740000 50300000 69437000 77150000 26231000 50920000 42586000 24069000 18517000 317 1495 321 1064;1065;1066;1067;1068;1069 1583;1584;1585;1586;1587;1588;1589;1590 1586 8 AFCGFEDPR LVDKIMVDRINLAQKAFCGFEDPRTKTKMS INLAQKAFCGFEDPRTKTKMSAAQALKKGW K A F P R T 1 1 0 1 1 0 1 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 9 0 1097.46 Q15149;D3DWL0;Q96IE3 Q15149 4492 4500 PLEC;PLEC1 Plectin yes no 2 0.0020709 87.696 3 0.61353 0.83312 2.6104 3 Median 0.61353 0.83312 2.6104 3 0 Median NaN NaN NaN 0 0 Median 57025000 32923000 24102000 57025000 32923000 24102000 0 0 0 318 1507 322 1070;1071;1072 1591;1592;1593;1594;1595 1594 5 AFDHVLHLRPLSR DGFHLLLMTPKPMIRAFDHVLHLRPLSRLQ IRAFDHVLHLRPLSRLQAACHRLKLWPELQ R A F S R L 1 2 0 1 0 0 0 0 2 0 3 0 0 1 1 1 0 0 0 1 0 0 13 1 1559.8685 Q9H6R4;A0A0A0MRW6;B4DF80;B3KPN5 Q9H6R4 469 481 NOL6 Nucleolar protein 6 yes no 4 0.0040952 70.488 2 0.87781 1.1948 9.681 2 Median 0.87781 1.1948 9.681 2 0 Median NaN NaN NaN 0 0 Median 24076000 12025000 12051000 24076000 12025000 12051000 0 0 0 319 1738 323 1073;1074 1596;1597 1596 2 AFDLFNPNFK RIRAKFYSVYGSGQRAFDLFNPNFKSTCQR GSGQRAFDLFNPNFKSTCQRFVEKYTELQK R A F F K S 1 0 2 1 0 0 0 0 0 0 1 1 0 3 1 0 0 0 0 0 0 0 10 0 1211.5975 J3QLR8;Q9Y3D9 J3QLR8 84 93 MRPS23 28S ribosomal protein S23, mitochondrial yes no 2 0.015211 96.711 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 320 1141 324 1075 1598 1598 1 AFDLHR TGYVVVTSSMDGTVRAFDLHRYRNFRTFTS TSSMDGTVRAFDLHRYRNFRTFTSPRPTQF R A F H R Y 1 1 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 6 0 757.38712 Q15269;A0A0B4J2E5;Q59FM2 Q15269 441 446 PWP2 Periodic tryptophan protein 2 homolog yes no 2 0.038716 105.42 1 1 0.754 1.0745 1.5485 2 Median 0.78077 1.0863 NaN 1 0 Median 0.72815 1.0628 NaN 1 0 Median 77512000 43473000 34039000 64654000 36224000 28430000 12858000 7248700 5609400 321 1508 325 1076;1077 1599;1600 1599 2 AFEDDAIQLVAR SQLQQILRSRLKHLKAFEDDAIQLVARKVA HLKAFEDDAIQLVARKVAALSGDARRCLDI K A F A R K 3 1 0 2 0 1 1 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 12 0 1346.683 B7Z8H0;Q96F82;A8K794;Q13415 B7Z8H0 694 705 ORC1L;ORC1 Origin recognition complex subunit 1 yes no 2 0.00052265 89.886 1 2 0.52804 0.76003 10.497 2 Median NaN NaN NaN 0 0 Median 0.52804 0.76003 10.497 2 0 Median 19046000 14266000 4779700 3252400 3252400 0 15794000 11014000 4779700 322 630 326 1078;1079;1080 1601;1602;1603 1603 2 AFEEDQVAGR LEQLRQQEEEKAEARAFEEDQVAGRLKEDV KAEARAFEEDQVAGRLKEDVLEQRGRLQKL R A F G R L 2 1 0 1 0 1 2 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 10 0 1120.5149 O43818 O43818 102 111 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 3.2707E-05 103.56 4 2 0.90137 1.2212 8.8426 4 Median 0.90137 1.2212 8.8426 4 0 Median NaN NaN NaN 0 0 Median 123700000 56581000 67116000 107680000 56581000 51102000 16015000 0 16015000 323 1188 327 1081;1082;1083;1084;1085;1086 1604;1605;1606;1607;1608;1609;1610;1611 1607 8 AFEGFNTCLFAYGQTGSGK QTTVYEKLAAPLLERAFEGFNTCLFAYGQT FNTCLFAYGQTGSGKSYTMMGFSEEPGIIP R A F G K S 2 0 1 0 1 1 1 4 0 0 1 1 0 3 0 1 2 0 1 0 0 0 19 0 2053.9204 Q15058 Q15058 435 453 KIF14 Kinesin-like protein KIF14 yes yes 2 0.00016219 101.36 3 0.88322 1.1326 9.6695 3 Median 0.88322 1.1326 9.6695 3 0 Median NaN NaN NaN 0 0 Median 7682700 4043200 3639500 7682700 4043200 3639500 0 0 0 324 1504 328 1087;1088;1089 1612;1613;1614;1615 1612 4 AFEVSENGNLVVSGK TGTVSLEVRLLEASRAFEVSENGNLVVSGK AFEVSENGNLVVSGKVYQWDDPDPRLFDHP R A F G K V 1 0 2 0 0 0 2 2 0 0 1 1 0 1 0 2 0 0 0 3 0 0 15 0 1548.7784 A0A0U1RQF0;P49327 A0A0U1RQF0 943 957 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 7.9875E-06 96.745 4 0.83349 1.0611 11.232 4 Median 0.83349 1.0611 11.232 4 0 Median NaN NaN NaN 0 0 Median 15887000 8877600 7009700 15887000 8877600 7009700 0 0 0 325 486 329 1090;1091;1092;1093 1616;1617;1618;1619;1620 1620 5 AFGIPIR DDKGTIKLADFGLARAFGIPIRVYTHEAIT LADFGLARAFGIPIRVYTHEAITLWYRSPE R A F I R V 1 1 0 0 0 0 0 1 0 2 0 0 0 1 1 0 0 0 0 0 0 0 7 0 772.45956 A0A024QZP7;P06493;Q5H9N4;A0A087WZZ9;I6L9I5;E5RIU6 A0A024QZP7 152 158 CDC2;CDK1;DKFZp686L20222 Cyclin-dependent kinase 1 yes no 2 0.015429 109.88 3 2 0.65564 0.878 37.829 5 Median 0.62202 0.8345 6.1737 3 0 Plateau 1.0409 1.6228 3.4069 2 0 Median 135630000 79523000 56107000 84416000 54007000 30409000 51213000 25516000 25698000 326 18 330 1094;1095;1096;1097;1098 1621;1622;1623;1624;1625;1626;1627;1628 1623 8 AFGIYLNK NLWEKMRHCSDKELKAFGIYLNKIKSCFTK CSDKELKAFGIYLNKIKSCFTKMTKVFTHQ K A F N K I 1 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 1 0 0 0 8 0 924.5069 Q8NG31;H0YCZ2;H0YEY7 Q8NG31 1992 1999 CASC5 Protein CASC5 yes no 2 0.043021 44.721 1 0.58228 0.74457 NaN 1 Median 0.58228 0.74457 NaN 1 0 Median NaN NaN NaN 0 0 Median 4280000 2415000 1865000 4280000 2415000 1865000 0 0 0 327 1656 331 1099 1629 1629 1 AFGLHCR PGGKPRGFSEAAAPRAFGLHCRLSIHLQHK FSEAAAPRAFGLHCRLSIHLQHKFCSEGKV R A F C R L 1 1 0 0 1 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 859.41229 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 821 827 NCAPG2 Condensin-2 complex subunit G2 yes no 2 0.022812 72.618 1 0.36432 0.47264 NaN 1 Median NaN NaN NaN 0 0 Median 0.36432 0.47264 NaN 1 0 Median 3954800 2912300 1042500 0 0 0 3954800 2912300 1042500 328 1621 332 1100 1630 1630 1 AFGPGLQGGSAGSPAR FPLEAVAPTKPSKVKAFGPGLQGGSAGSPA FGPGLQGGSAGSPARFTIDTKGAGTGGLGL K A F A R F 3 1 0 0 0 1 0 5 0 0 1 0 0 1 2 2 0 0 0 0 0 0 16 0 1428.711 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 1072 1087 FLNA Filamin-A yes no 2 5.9724E-23 155.97 4 1 1.3478 1.8369 NaN 1 Median 1.3478 1.8369 NaN 1 0 Median NaN NaN NaN 0 0 Median 53857000 4386000 49471000 50163000 4386000 45777000 3693600 0 3693600 329 1287 333 1101;1102;1103;1104;1105 1631;1632;1633;1634;1635 1633 5 AFGVPVR NTEGAIKLADFGLARAFGVPVRTYTHEVTR LADFGLARAFGVPVRTYTHEVTRRALFPGD R A F V R T 1 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 2 0 0 7 0 744.42826 E7ESI2;B4DDL9;A0A024RB10;A0A024RB77;G3V5T9;P24941 E7ESI2 125 131 CDK2 Cyclin-dependent kinase 2 yes no 2 0.016227 94.669 3 0.39034 0.53234 30.941 2 Median 0.39034 0.53234 30.941 2 0 Median NaN NaN NaN 0 0 Median 6499200 5020600 1478600 6499200 5020600 1478600 0 0 0 330 254 334 1106;1107;1108 1636;1637;1638 1638 3 AFGYYGPLR VGNLGNNGNKTELERAFGYYGPLRSVWVAR KTELERAFGYYGPLRSVWVARNPPGFAFVE R A F L R S 1 1 0 0 0 0 0 2 0 0 1 0 0 1 1 0 0 0 2 0 0 0 9 0 1042.5236 B2R6F3;P84103;A0A087X2D0 B2R6F3 29 37 SFRS3;SRSF3 Serine/arginine-rich splicing factor 3 yes no 2 1.4224E-08 139.92 3 2 0.52656 0.76667 63.765 4 Median 0.31956 0.43997 3.4477 2 0 Median 0.84358 1.3266 2.448 2 0 Median 222400000 169840000 52560000 159410000 136140000 23270000 62990000 33700000 29290000 331 698 335 1109;1110;1111;1112;1113 1639;1640;1641;1642;1643;1644;1645 1641 7 AFIPAIDSFGFETDLR TQDAPIPGSPLYTIKAFIPAIDSFGFETDL FIPAIDSFGFETDLRTHTQGQAFSLSVFHH K A F L R T 2 1 0 2 0 0 1 1 0 2 1 0 0 3 1 1 1 0 0 0 0 0 16 0 1797.8938 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3 B4DZB1 824 839 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 2.2411E-13 116.01 4 0.63169 0.85114 33.497 3 Median 0.63169 0.85114 33.497 3 0 Median NaN NaN NaN 0 0 Median 81635000 52038000 29597000 81635000 52038000 29597000 0 0 0 332 654 336 1114;1115;1116;1117 1646;1647;1648;1649;1650;1651;1652 1652 7 AFITNIPFDVK GNRFEPYANPTKRYRAFITNIPFDVKWQSL KRYRAFITNIPFDVKWQSLKDLVKEKVGEV R A F V K W 1 0 1 1 0 0 0 0 0 2 0 1 0 2 1 0 1 0 0 1 0 0 11 0 1263.6863 P52272;A0A087X0X3;M0R019;B4DEG4;M0R2T0;M0R0N3;M0QYQ7;M0R0Y6 P52272 73 83 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 6.9194E-23 189.18 7 2 0.34841 0.44601 116.14 5 Median 0.34069 0.44411 1.8902 3 0 Median 2.3634 3.669 1.2508 2 0 Median 317090000 193500000 123590000 258650000 174350000 84308000 58438000 19152000 39286000 333 1363 337 1118;1119;1120;1121;1122;1123;1124;1125;1126 1653;1654;1655;1656;1657;1658;1659;1660;1661;1662;1663;1664;1665 1656 13 AFIVTDEDIR KNPAVWLNTSQPLCKAFIVTDEDIRKQEER QPLCKAFIVTDEDIRKQEERVQQVRKKLEE K A F I R K 1 1 0 2 0 0 1 0 0 2 0 0 0 1 0 0 1 0 0 1 0 0 10 0 1177.5979 Q9UBB5;O60535;Q69YZ5 Q9UBB5 361 370 MBD2;NY-CO-41;DKFZp586O0821 Methyl-CpG-binding domain protein 2 yes no 2 0.0031692 90.906 3 2 0.8647 1.361 27.663 3 Median 0.65095 0.8862 NaN 1 0 Median 0.91745 1.4222 6.2236 2 0 Median 73180000 46862000 26318000 27279000 23460000 3819100 45901000 23402000 22499000 334 1781 338 1127;1128;1129;1130;1131 1666;1667;1668;1669;1670;1671;1672 1672 7 AFLDFHALPYQVVEVNPVR TLYQYKTCPFCSKVRAFLDFHALPYQVVEV FHALPYQVVEVNPVRRAEIKFSSYRKVPIL R A F V R R 2 1 1 1 0 1 1 0 1 0 2 0 0 2 2 0 0 0 1 4 0 0 19 0 2213.1633 Q9H7Z7 Q9H7Z7 118 136 PTGES2 Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form yes yes 3 2.161E-05 96.805 2 0.46679 0.64347 0.742 2 Median 0.46679 0.64347 0.742 2 0 Median NaN NaN NaN 0 0 Median 5153000 3020200 2132900 5153000 3020200 2132900 0 0 0 335 1742 339 1132;1133 1673;1674 1673 2 AFLGELK VHPSEMINNAENLFRAFLGELKTQMTSAVR NNAENLFRAFLGELKTQMTSAVREPKLPVL R A F L K T 1 0 0 0 0 0 1 1 0 0 2 1 0 1 0 0 0 0 0 0 0 0 7 0 776.44324 P78527;B4DL41 P78527 199 205 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.030959 95.793 3 0.43839 0.53819 12.701 3 Median 0.43839 0.53819 12.701 3 0 Median NaN NaN NaN 0 0 Median 41720000 27700000 14020000 41720000 27700000 14020000 0 0 0 336 1427 340 1134;1135;1136 1675;1676;1677;1678 1678 4 AFLGQVLVR LGLEFFDQPAVPLARAFLGQVLVRRLPNGT AVPLARAFLGQVLVRRLPNGTELRGRIVET R A F V R R 1 1 0 0 0 1 0 1 0 0 2 0 0 1 0 0 0 0 0 2 0 0 9 0 1001.6022 A2IDA3;Q1W6H1;P29372 A2IDA3 84 92 MPG DNA-3-methyladenine glycosylase yes no 2 0.025209 48.756 2 0.47335 0.67152 7.9499 2 Median NaN NaN NaN 0 0 Median 0.47335 0.67152 7.9499 2 0 Median 22426000 14739000 7687100 0 0 0 22426000 14739000 7687100 337 537 341 1137;1138 1679;1680 1680 2 AFLIEEQK GGSMCAKCVRDRIKRAFLIEEQKIVVKVLK VRDRIKRAFLIEEQKIVVKVLKAQAQSQKA R A F Q K I 1 0 0 0 0 1 2 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 8 0 976.52295 A0A024RDH8;P49207;Q5MK14 A0A024RDH8 94 101 RPL34 60S ribosomal protein L34 yes no 1;2 4.3861E-10 152.63 6 2 0.78172 1.0332 10.169 7 Median 0.80046 1.041 6.3108 5 0 Median 0.54828 0.87538 2.326 2 0 Median 931020000 532220000 398800000 798120000 448830000 349280000 132910000 83390000 49516000 338 316 342 1139;1140;1141;1142;1143;1144;1145;1146 1681;1682;1683;1684;1685;1686;1687;1688;1689;1690;1691;1692;1693 1686 13 AFLLESLLK KHNVHSPYKCTICGKAFLLESLLKNHVAAH CTICGKAFLLESLLKNHVAAHGQSLLKCPR K A F L K N 1 0 0 0 0 0 1 0 0 0 4 1 0 1 0 1 0 0 0 0 0 0 9 0 1032.6219 Q96JM3 Q96JM3 746 754 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 2 0.03531 71.379 1 0.83355 1.0124 NaN 1 Median 0.83355 1.0124 NaN 1 0 Median NaN NaN NaN 0 0 Median 740990 468290 272700 740990 468290 272700 0 0 0 339 1690 343 1147 1694 1694 1 AFLNAIMR GGNIEVLGFNARQRKAFLNAIMRYGMPPQD FNARQRKAFLNAIMRYGMPPQDAFTTQWLV K A F M R Y 2 1 1 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 8 0 934.50586 B3KY63;F5GWX5;A0A0C4DGG9;Q14839;Q8TDI0;K7EMY3;Q659F1;Q659D0;Q6ZU36;B3KRD4 B3KY63 1397 1404 CHD4;CHD5;DKFZp434K213;DKFZp434P202 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5 yes no 2 0.0061062 71.378 2 1.0813 1.6262 NaN 1 Median NaN NaN NaN 0 0 Median 1.0813 1.6262 NaN 1 0 Median 23301000 14699000 8601800 0 0 0 23301000 14699000 8601800 340 428 344 1148;1149 1695;1696;1697 1695 141 3 AFLPLLK EDHGYLVDIGVDGTRAFLPLLKAQEYIRQK DIGVDGTRAFLPLLKAQEYIRQKNKGAKLK R A F L K A 1 0 0 0 0 0 0 0 0 0 3 1 0 1 1 0 0 0 0 0 0 0 7 0 800.51601 Q14690;B4DH82;B4DES7 Q14690 213 219 PDCD11 Protein RRP5 homolog yes no 2 0.041035 54.525 1 1.0948 1.3864 NaN 1 Median 1.0948 1.3864 NaN 1 0 Median NaN NaN NaN 0 0 Median 16461000 8137500 8323200 16461000 8137500 8323200 0 0 0 341 1494 345 1150 1698 1698 1 AFLQGGQEATDIALLLR QSALDCMSVEVGRLRAFLQGGQEATDIALL LQGGQEATDIALLLRDLETSCSDIRQFCKK R A F L R D 3 1 0 1 0 2 1 2 0 1 4 0 0 1 0 0 1 0 0 0 0 0 17 0 1814.989 Q6AWB3;Q6AWB1;E7EX90;Q6MZZ3;Q14203;O95654 Q6AWB3 732 748 DKFZp686E191;DKFZp686E0752;DCTN1;DKFZp686I0746 Dynactin subunit 1 yes no 2 0.0016461 96.135 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1226100 1226100 0 1226100 1226100 0 0 0 0 342 1018 346 1151;1152 1699;1700 1700 2 AFLTLAEDILR RFFETSAKANINIEKAFLTLAEDILRKTPV NIEKAFLTLAEDILRKTPVKEPNSENVDIS K A F L R K 2 1 0 1 0 0 1 0 0 1 3 0 0 1 0 0 1 0 0 0 0 0 11 0 1260.7078 P61026;Q53T70 P61026 162 172 RAB10 Ras-related protein Rab-10 yes no 2 6.2382E-07 142.92 4 0.48971 0.67658 7.925 4 Median 0.48971 0.67658 7.925 4 0 Median NaN NaN NaN 0 0 Median 14133000 9166100 4967100 14133000 9166100 4967100 0 0 0 343 1391 347 1153;1154;1155;1156 1701;1702;1703;1704;1705;1706;1707;1708 1703 8 AFLTLAEDILRK RFFETSAKANINIEKAFLTLAEDILRKTPV IEKAFLTLAEDILRKTPVKEPNSENVDISS K A F R K T 2 1 0 1 0 0 1 0 0 1 3 1 0 1 0 0 1 0 0 0 0 0 12 1 1388.8028 P61026;Q53T70 P61026 162 173 RAB10 Ras-related protein Rab-10 yes no 3 0.037688 41.48 2 0.43524 0.55206 2.6528 2 Median 0.43524 0.55206 2.6528 2 0 Median NaN NaN NaN 0 0 Median 4996900 2924000 2072900 4996900 2924000 2072900 0 0 0 344 1391 348 1157;1158 1709;1710 1710 2 AFLYEPTTQASGR KSLTQARLLSQPPAKAFLYEPTTQASGRAS AKAFLYEPTTQASGRASAGAEQTPGPLSQS K A F G R A 2 1 0 0 0 1 1 1 0 0 1 0 0 1 1 1 2 0 1 0 0 0 13 0 1439.7045 B2RWP5;Q96L73;Q658U6;Q9H6B5;A0A1D8GZ55;A0A1D8GZ56;Q9H6H8 B2RWP5 2277 2289 NSD1;DKFZp666C163 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 2 0.0044985 60.064 2 1.0353 1.4322 22.87 2 Median 1.0353 1.4322 22.87 2 0 Median NaN NaN NaN 0 0 Median 11658000 5865700 5792200 11658000 5865700 5792200 0 0 0 345 749 349 1159;1160 1711;1712 1712 2 AFMGPLK SKFGHGRFQTMEEKKAFMGPLKKDRIAKEE FQTMEEKKAFMGPLKKDRIAKEEGA_____ K A F L K K 1 0 0 0 0 0 0 1 0 0 1 1 1 1 1 0 0 0 0 0 0 0 7 0 762.40983 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;B3KS36;Q49AJ9;Q9BT63 P39023 387 393 RPL3;rpl3 60S ribosomal protein L3 yes no 2 0.020103 56.51 2 1 0.67848 0.92377 10.902 3 Median 0.70631 0.88234 6.4893 2 0 Median 0.66725 1.0472 NaN 1 0 Median 122980000 74513000 48463000 48441000 28743000 19698000 74536000 45770000 28766000 346 1330 350;351 1161;1162;1163 1713;1714;1715;1716 1713 554 4 AFMGPLKK SKFGHGRFQTMEEKKAFMGPLKKDRIAKEE QTMEEKKAFMGPLKKDRIAKEEGA______ K A F K K D 1 0 0 0 0 0 0 1 0 0 1 2 1 1 1 0 0 0 0 0 0 0 8 1 890.50479 P39023;Q8TBW1;Q9NY85;G5E9G0;B3KS36;Q49AJ9;Q9BT63 P39023 387 394 RPL3;rpl3 60S ribosomal protein L3 yes no 2 0.034777 55.441 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14831000 0 14831000 0 0 0 14831000 0 14831000 347 1330 352 1164 1717 1717 554 1 AFMGTPVQK MLTPKPAGGDEKDIKAFMGTPVQKLDLAGT DEKDIKAFMGTPVQKLDLAGTLPGSKRQLQ K A F Q K L 1 0 0 0 0 1 0 1 0 0 0 1 1 1 1 0 1 0 0 1 0 0 9 0 977.50044 P46013 P46013 1189 1197 MKI67 Antigen KI-67 yes no 2 1.2038E-21 176.41 7 4 0.93516 1.367 13.107 11 Median 0.93516 1.1418 10.332 7 0 Median 0.96605 1.4604 2.477 4 0 Median 599110000 303070000 296050000 133820000 64647000 69170000 465300000 238420000 226880000 348 1342 353;354 1165;1166;1167;1168;1169;1170;1171;1172;1173;1174;1175 1718;1719;1720;1721;1722;1723;1724;1725;1726;1727;1728;1729;1730;1731;1732;1733 1724 566 16 AFMVTDEDIR KNPGVWLNTTQPLCKAFMVTDEDIRKQEEL QPLCKAFMVTDEDIRKQEELVQQVRKRLEE K A F I R K 1 1 0 2 0 0 1 0 0 1 0 0 1 1 0 0 1 0 0 1 0 0 10 0 1195.5543 O95983;B3KMA8;K7EIE8 O95983 217 226 MBD3 Methyl-CpG-binding domain protein 3 yes no 2 0.00055455 79.906 2 0.92362 1.3357 8.471 2 Median NaN NaN NaN 0 0 Median 0.92362 1.3357 8.471 2 0 Median 13305000 7339700 5965400 0 0 0 13305000 7339700 5965400 349 1225 355 1176;1177 1734;1735 1734 460 2 AFNSSSFNSNTFLTR VRMAVQDAVDALMQKAFNSSSFNSNTFLTR AFNSSSFNSNTFLTRLLVHMGLLKSEDKVK K A F T R L 1 1 3 0 0 0 0 0 0 0 1 0 0 3 0 4 2 0 0 0 0 0 15 0 1691.7903 B4DY16;A0A024R1U0;P46060;B4E0U0;Q9BSK3 B4DY16 446 460 RANGAP1 Ran GTPase-activating protein 1 yes no 2 0.0084548 49.423 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 350 70 356 1178 1736 1736 1 AFNSVDPTFDNSVPSK ITKAYEMLSDPVKRRAFNSVDPTFDNSVPS FNSVDPTFDNSVPSKSEAKDNFFEVFTPVF R A F S K S 1 0 2 2 0 0 0 0 0 0 0 1 0 2 2 3 1 0 0 2 0 0 16 0 1723.8053 Q99543;Q6P5S9;C9IZ83;H7C3L7 Q99543 156 171 DNAJC2 DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed yes no 2 0.018976 45.915 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2470700 2470700 0 2470700 2470700 0 0 0 0 351 1704 357 1179 1737 1737 1 AFPEHFTYEPNEADAAQGYR LGRYYMSARHMALSKAFPEHFTYEPNEADA FTYEPNEADAAQGYRYPRPASVPPSPSLSR K A F Y R Y 4 1 1 1 0 1 3 1 1 0 0 0 0 2 2 0 1 0 2 0 0 0 20 0 2312.0134 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6;B7Z255 P13807 616 635 GYS1 Glycogen [starch] synthase, muscle yes no 3 9.0563E-10 105.79 4 1 0.71131 0.96376 61.781 5 Median 0.7292 0.98278 4.6594 4 0 Median 0.15984 0.24699 NaN 1 0 Median 150270000 91136000 59129000 126140000 71575000 54567000 24123000 19561000 4562300 352 1265 358 1180;1181;1182;1183;1184 1738;1739;1740;1741;1742;1743;1744;1745;1746;1747 1743 10 AFQAAFR VQEVLSIKHLPPQLRAFQAAFRAQGPLAML KHLPPQLRAFQAAFRAQGPLAMLQHFDTIY R A F F R A 3 1 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 7 0 809.41842 B3KMS0;Q15021;B3KY03;E7EN77;Q6ZV00;A0PJ76;F5GZK7;F5H431 B3KMS0 43 49 NCAPD2 Condensin complex subunit 1 yes no 2 0.0099998 130.01 3 1 0.67585 0.91876 15.044 3 Median 0.69218 0.94359 3.7724 2 0 Median 0.4716 0.73015 NaN 1 0 Median 107980000 65722000 42263000 81563000 47538000 34025000 26421000 18183000 8238100 353 757 359 1185;1186;1187;1188 1748;1749;1750;1751;1752;1753 1750 6 AFQEGIAK AEEERIRKHKAAAEKAFQEGIAKAKLVMRR HKAAAEKAFQEGIAKAKLVMRRTPIGTDRN K A F A K A 2 0 0 0 0 1 1 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 8 0 862.45487 Q9UIG0 Q9UIG0 886 893 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.0078911 72.138 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23821000 0 23821000 0 0 0 23821000 0 23821000 354 1786 360 1189;1190 1754;1755 1754 2 AFQTDHIIK A F I K 1 0 0 1 0 1 0 0 1 2 0 1 0 1 0 0 1 0 0 0 0 0 9 0 1071.5713 REV__C0JYZ2 yes no 2 0.021734 79.469 1 0.66135 0.85309 NaN 1 Median 0.66135 0.85309 NaN 1 0 Median NaN NaN NaN 0 0 Median 10252000 5882300 4369700 10252000 5882300 4369700 0 0 0 + 355 1841 361 1191 1756 1756 1 AFREEAIK TNETPYFMKSIDCIRAFREEAIKFSEEQRF KSIDCIRAFREEAIKFSEEQRFNNFLKALQ R A F I K F 2 1 0 0 0 0 2 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 8 1 962.51853 P13010;Q53T09 P13010 641 648 XRCC5 X-ray repair cross-complementing protein 5 yes no 2;3 0.00023747 136.75 4 3 0.59468 0.80955 16.369 5 Median 0.59795 0.79043 16.241 4 0 Median 0.59468 0.99713 NaN 1 0 Median 353050000 233780000 119270000 244080000 149230000 94856000 108970000 84552000 24414000 356 1262 362 1192;1193;1194;1195;1196;1197;1198 1757;1758;1759;1760;1761;1762;1763;1764 1760 8 AFSAVDTDGNGTINAQELGAALK MAGELTPEEEAQYKKAFSAVDTDGNGTINA GNGTINAQELGAALKATGKNLSEAQLRKLI K A F L K A 5 0 2 2 0 1 1 3 0 1 2 1 0 1 0 1 2 0 0 1 0 0 23 0 2262.1128 Q9NZT1 Q9NZT1 16 38 CALML5 Calmodulin-like protein 5 yes yes 2 0.0014114 71.545 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 900500 900500 0 900500 900500 0 0 0 0 357 1773 363 1199 1765 1765 1 AFSEIQGLTDQADK LLHSSKVSKSLILTRAFSEIQGLTDQADKL RAFSEIQGLTDQADKLIGQKNLLTRKRNIL R A F D K L 2 0 0 2 0 2 1 1 0 1 1 1 0 1 0 1 1 0 0 0 0 0 14 0 1521.7311 B9EGR5;Q8IWI9;B4DVS1;H3BU53 B9EGR5 2258 2271 MGA MAX gene-associated protein yes no 2 3.2963E-08 128.08 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 358 930 364 1200 1766 1766 1 AFSQFVRPLIAAK HVFSEEDYRTLTNYKAFSQFVRPLIAAKNP YKAFSQFVRPLIAAKNPKIAVSKMMMVLGA K A F A K N 3 1 0 0 0 1 0 0 0 1 1 1 0 2 1 1 0 0 0 1 0 0 13 1 1446.8347 B3KY63;F5GWX5;A0A0C4DGG9;Q14839;F5H6N4;Q05CG6 B3KY63 154 166 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 0.040165 47.429 1 1 0.84274 1.2489 39.956 2 Median 0.70713 0.94148 NaN 1 0 Median 1.0044 1.6566 NaN 1 0 Median 31385000 16408000 14977000 13940000 7905900 6033900 17445000 8502000 8943200 359 428 365 1201;1202 1767;1768;1769 1767 3 AFSYYGPLR VGNLGTGAGKGELERAFSYYGPLRTVWIAR KGELERAFSYYGPLRTVWIARNPPGFAFVE R A F L R T 1 1 0 0 0 0 0 1 0 0 1 0 0 1 1 1 0 0 2 0 0 0 9 0 1072.5342 A0A0B4J1Z1;B4DEK2;C9JAB2;Q16629;Q8NB80 A0A0B4J1Z1 30 38 SRSF7 Serine/arginine-rich splicing factor 7 yes no 2 3.9688E-06 168.45 4 2 0.48584 0.6683 40.64 6 Median 0.47208 0.65132 2.6143 4 0 Median 0.90782 1.4394 3.9496 2 0 Median 289920000 188630000 101290000 218010000 149680000 68333000 71907000 38949000 32958000 360 414 366 1203;1204;1205;1206;1207;1208 1770;1771;1772;1773;1774;1775;1776;1777;1778;1779;1780;1781 1771 12 AFTGFIVEADTPGIQIGR LLARSDPDPKAPANKAFTGFIVEADTPGIQ GFIVEADTPGIQIGRKELNMGQRCSDTRGI K A F G R K 2 1 0 1 0 1 1 3 0 3 0 0 0 2 1 0 2 0 0 1 0 0 18 0 1890.984 A0A0S2Z366;Q5T4U5;Q5HYG7;P11310;B7Z9I1;B4DWX6;B4DJE7;B4DVB1;A0A0S2Z3A5;B4DVE0 A0A0S2Z366 218 235 ACADM;DKFZp686M24262 Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 4.9052E-25 219.74 5 0.28051 0.37743 NaN 1 Median 0.28051 0.37743 NaN 1 0 Median NaN NaN NaN 0 0 Median 32724000 29325000 3399000 32724000 29325000 3399000 0 0 0 361 449 367 1209;1210;1211;1212;1213 1782;1783;1784;1785;1786 1783 5 AFTKPEEACSFILSADFPALVVK KEFMDRHGIPTAQWKAFTKPEEACSFILSA CSFILSADFPALVVKASGLAAGKGVIVAKS K A F V K A 4 0 0 1 1 0 2 0 0 1 2 2 0 3 2 2 1 0 0 2 0 0 23 1 2539.3032 Q3B7A7;Q59HH3;P22102;Q15374;F8WD69;C9JBJ1;C9JTV6;H7C366 Q3B7A7 126 148 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 3 1.4157E-09 109.32 2 0.20635 0.2532 30.328 2 Median 0.20635 0.2532 30.328 2 0 Median NaN NaN NaN 0 0 Median 28213000 22442000 5770600 28213000 22442000 5770600 0 0 0 362 1289 368 1214;1215 1787;1788 1788 2 AFTQLSNLQSHR TGDRPYKCAHPGCEKAFTQLSNLQSHRRQH CEKAFTQLSNLQSHRRQHNKDKPFKCHNCH K A F H R R 1 1 1 0 0 2 0 0 1 0 2 0 0 1 0 2 1 0 0 0 0 0 12 0 1400.7161 D3DUR9;Q8TF68;B4DQU6 D3DUR9 383 394 ZNF384 Zinc finger protein 384 yes no 2;3 0.00057223 114.89 4 1 0.73319 0.99978 17.95 5 Median 0.79047 1.0556 19.859 4 0 Median 0.70601 0.99978 NaN 1 0 Median 51204000 30025000 21179000 44133000 26145000 17988000 7070900 3879900 3191000 363 983 369 1216;1217;1218;1219;1220 1789;1790;1791;1792;1793;1794 1789 6 AFVAGVLPFK INLTERGCVTKIYGRAFVAGVLPFKVAKDM KIYGRAFVAGVLPFKVAKDMAAAAVRCIRK R A F F K V 2 0 0 0 0 0 0 1 0 0 1 1 0 2 1 0 0 0 0 2 0 0 10 0 1047.6117 A8K8K1;O00442 A8K8K1 196 205 RTCA RNA 3-terminal phosphate cyclase yes no 2 0.0016383 75.854 1 0.35833 0.45879 NaN 1 Median 0.35833 0.45879 NaN 1 0 Median NaN NaN NaN 0 0 Median 3962200 3273100 689120 3962200 3273100 689120 0 0 0 364 641 370 1221 1795 1795 1 AFVAIGDYNGHVGLGVK PVQKQTRAGQRTRFKAFVAIGDYNGHVGLG VAIGDYNGHVGLGVKCSKEVATAIRGAIIL K A F V K C 2 0 1 1 0 0 0 4 1 1 1 1 0 1 0 0 0 0 1 3 0 0 17 0 1715.8995 P15880;Q8J014;Q8N5L9;Q6IPX5;Q3KQT6;H0YEN5;I3L404;E9PMM9;E9PPT0;Q8NI61;E9PM36 P15880 126 142 RPS2;rps2;OK/KNS-cl.7 40S ribosomal protein S2 yes no 2;3 2.2656E-30 145.55 8 2 0.76447 0.99879 23.349 10 Median 0.77475 1.0098 9.5914 8 0 Median 0.36194 0.57758 4.5129 2 0 Median 453040000 272640000 180400000 355450000 199420000 156030000 97591000 73218000 24374000 365 1269 371 1222;1223;1224;1225;1226;1227;1228;1229;1230;1231 1796;1797;1798;1799;1800;1801;1802;1803;1804;1805;1806;1807;1808;1809;1810;1811;1812 1807 17 AFVDFLSDEIK ACGCGCGSLHTDGDKAFVDFLSDEIKEERK DGDKAFVDFLSDEIKEERKIQKHKTLPKMS K A F I K E 1 0 0 2 0 0 1 0 0 1 1 1 0 2 0 1 0 0 0 1 0 0 11 0 1282.6445 A8K651;Q07021 A8K651 81 91 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes no 2 0.00036454 96.89 3 2 0.4671 0.59238 76.058 5 Median 0.43114 0.54747 11.178 3 0 Plateau 1.3629 2.0775 7.5696 2 0 Median 78545000 41665000 36880000 33040000 22300000 10740000 45505000 19365000 26141000 366 620 372 1232;1233;1234;1235;1236 1813;1814;1815;1816;1817;1818 1815 5 AFVDFLSDEIKEER ACGCGCGSLHTDGDKAFVDFLSDEIKEERK KAFVDFLSDEIKEERKIQKHKTLPKMSGGW K A F E R K 1 1 0 2 0 0 3 0 0 1 1 1 0 2 0 1 0 0 0 1 0 0 14 1 1696.8308 A8K651;Q07021 A8K651 81 94 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes no 3 4.9051E-07 101.2 3 0.58048 0.76807 19.205 2 Median 0.58048 0.76807 19.205 2 0 Median NaN NaN NaN 0 0 Median 9154200 6999700 2154400 9154200 6999700 2154400 0 0 0 367 620 373 1237;1238;1239 1819;1820;1821;1822;1823;1824 1823 6 AFVEDSEDEDGAGEGGSSLLQK QSYVEEQKQLKESFRAFVEDSEDEDGAGEG DEDGAGEGGSSLLQKRAKTRQEKAQEEADY R A F Q K R 2 0 0 3 0 1 4 4 0 0 2 1 0 1 0 3 0 0 0 1 0 0 22 0 2238.9764 Q8N9T8;A0A024R7C4;B4DUY9;B7ZLF4;H0YFD2;F8WFC1 Q8N9T8 166 187 KRI1;FLJ12949 Protein KRI1 homolog yes no 2 1.5167E-05 96.247 3 1 0.48324 0.6589 64.776 2 Median 0.82459 1.0417 NaN 1 0 Median 0.28319 0.41677 NaN 1 0 Median 11641000 7458900 4182000 3584300 2485500 1098800 8056600 4973400 3083200 368 1645 374 1240;1241;1242;1243 1825;1826;1827;1828 1825 4 AFVPQLR SVVKVSYKGSPAARRAFVPQLRSGKFNVLL KGSPAARRAFVPQLRSGKFNVLLTTYEYII R A F L R S 1 1 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 7 0 829.48102 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;Q59FZ6;B4E0F1;B4DSI8 A7E2E1 843 849 SMARCA4 Transcription activator BRG1 yes no 2 0.049549 51.036 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 369 403 375 1244 1829 1829 1 AFVYINEYR RITVENEVDLDGPPRAFVYINEYRVGEGIT LDGPPRAFVYINEYRVGEGITLNQVAVGCE R A F Y R V 1 1 1 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 2 1 0 0 9 0 1173.5819 O43463;B4DMP6;Q14828 O43463 159 167 SUV39H1;MG44 Histone-lysine N-methyltransferase SUV39H1 yes no 2 0.0013414 111.95 1 2 0.75797 1.0073 NaN 1 Median 0.75797 1.0073 NaN 1 0 Median NaN NaN NaN 0 0 Median 39252000 34987000 4265000 9879300 5614300 4265000 29372000 29372000 0 370 1185 376 1245;1246;1247 1830;1831;1832 1830 3 AFYPEEISSMVLTK GDKPKVQVSYKGETKAFYPEEISSMVLTKM KAFYPEEISSMVLTKMKEIAEAYLGYPVTN K A F T K M 1 0 0 0 0 0 2 0 0 1 1 1 1 1 1 2 1 0 1 1 0 0 14 0 1613.8011 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DI39;B4DWK5;B4DNT8;Q9UQC1;B4DXY3;Q53FA3;B4DI54;P34931;B2RCQ9 A8K5I0 113 126 HEL-S-103;HSPA1B;HSPA1A;HSP70-1;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like no no 2 9.493E-05 104.07 2 0.85919 1.0882 8.635 2 Median 0.85919 1.0882 8.635 2 0 Median NaN NaN NaN 0 0 Median 13005000 7087400 5917400 13005000 7087400 5917400 0 0 0 371 439;810 377 1248;1249 1833;1834;1835 1833 3 AGAAAASAAAYAAYGYNVSK RKSTAGSAAAMAGAKAGAAAASAAAYAAYG ASAAAYAAYGYNVSKGISASSPLQTSLVRP K A G S K G 10 0 1 0 0 0 0 2 0 0 0 1 0 0 0 2 0 0 3 1 0 0 20 0 1846.885 A0A024R9R7;Q9ULG1;Q9NUK2 A0A024R9R7 1465 1484 INOC1;INO80 DNA helicase INO80 yes no 2 4.8613E-10 92.039 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1639800 1639800 0 1639800 1639800 0 0 0 0 372 230 378 1250 1836 1836 1 AGAAGGASVGGSGLPR DQLWRPYYSYKPKRKAGAAGGASVGGSGLP GAAGGASVGGSGLPRGRRPPRWRQKLERRS K A G P R G 4 1 0 0 0 0 0 6 0 0 1 0 0 0 1 2 0 0 0 1 0 0 16 0 1283.6582 Q9P1Z0;B3KVD4 Q9P1Z0 676 691 ZBTB4 Zinc finger and BTB domain-containing protein 4 yes no 2 5.2634E-07 97.911 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 373 1778 379 1251;1252;1253;1254 1837;1838;1839;1840 1839 4 AGAANSQLSTSQPSLR AWGLEQRPHVAGKPRAGAANSQLSTSQPSL GAANSQLSTSQPSLRYYALWVQVSLIQQIL R A G L R Y 3 1 1 0 0 2 0 1 0 0 2 0 0 0 1 4 1 0 0 0 0 0 16 0 1586.8012 F5H7W8;Q96C57;G5EA44;B4DWJ9 F5H7W8 48 63 C12orf43 Uncharacterized protein C12orf43 yes no 2 8.1087E-05 67.997 2 0.39304 0.50974 NaN 1 Median NaN NaN NaN 0 0 Median 0.39304 0.50974 NaN 1 0 Median 6940100 5665700 1274400 0 0 0 6940100 5665700 1274400 374 1057 380 1255;1256 1841;1842;1843 1841 3 AGAGAPVVGSGSSGGGNAFTGLGPVSTLPSLHGK RPGLLKDPGVGGKARAGAGAPVVGSGSSGG TGLGPVSTLPSLHGKQGVTSVTCHGGYVYT R A G G K Q 4 0 1 0 0 0 0 10 1 0 3 1 0 1 3 5 2 0 0 3 0 0 34 0 2963.5101 A0A087X295;Q9NNW5;Q8NDH0;E9PDU5;B4E256 A0A087X295 566 599 WDR6;DKFZp434F1720 WD repeat-containing protein 6 yes no 3 5.6644E-07 69.77 4 0.45453 0.57014 14.124 4 Median 0.45453 0.57014 14.124 4 0 Median NaN NaN NaN 0 0 Median 35103000 24433000 10670000 35103000 24433000 10670000 0 0 0 375 376 381 1257;1258;1259;1260 1844;1845;1846;1847;1848;1849;1850;1851;1852 1847 9 AGAGPGGPPQKPAPSSQR GAKPKRKPGMRPDWKAGAGPGGPPQKPAPS GPGGPPQKPAPSSQRKPPARPSAAAAAIAV K A G Q R K 3 1 0 0 0 2 0 4 0 0 0 1 0 0 5 2 0 0 0 0 0 0 18 1 1658.8489 Q9Y5J1;B2RAX6 Q9Y5J1 31 48 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 3 3.0931E-15 128.74 4 2 0.85964 1.1658 5.4617 6 Median 0.92307 1.214 3.9427 4 0 Median 0.78362 1.1007 3.2691 2 0 Median 19375000 10232000 9143900 14631000 7547900 7083400 4744100 2683700 2060500 376 1830 382 1261;1262;1263;1264;1265;1266 1853;1854;1855;1856;1857;1858;1859;1860;1861;1862 1853 10 AGAIAPCEVTVPAQNTGLGPEK IRDMLLANKVPAAARAGAIAPCEVTVPAQN EVTVPAQNTGLGPEKTSFFQALGITTKISR R A G E K T 4 0 1 0 1 1 2 3 0 1 1 1 0 0 3 0 2 0 0 2 0 0 22 0 2179.0943 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VWS0;Q53HK9;F8VW21;F8VU65;Q6NSF2;B4E3D5;G3V210;Q8NHW5;F8VQY6;F8VPE8;F8VRK7 Q53HW2 113 134 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 6.19E-72 213.52 4 2 0.8051 1.0199 5.5125 6 Median 0.83984 1.0726 4.8901 4 0 Median 0.60878 0.97165 0.43749 2 0 Median 270510000 152550000 117960000 186970000 101980000 84988000 83539000 50569000 32970000 377 281 383 1267;1268;1269;1270;1271;1272 1863;1864;1865;1866;1867;1868;1869;1870;1871;1872;1873 1866 11 AGAISASGPELQGAGHSK GSGAASPTGSAVDIRAGAISASGPELQGAG ISASGPELQGAGHSKLQVTMPGIKVGGSGV R A G S K L 4 0 0 0 0 1 1 4 1 1 1 1 0 0 1 3 0 0 0 0 0 0 18 0 1636.8169 Q09666;B4DTV0 Q09666 226 243 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2;3 1.2483E-09 91.307 5 1 0.4562 0.57297 12.782 2 Median 0.4562 0.57297 12.782 2 0 Median NaN NaN NaN 0 0 Median 26883000 17654000 9228500 25226000 17654000 7572000 1656500 0 1656500 378 1453 384 1273;1274;1275;1276;1277;1278 1874;1875;1876;1877;1878;1879;1880 1879 7 AGAKPDQIGIITPYEGQR TEAANVEKITTKLLKAGAKPDQIGIITPYE KPDQIGIITPYEGQRSYLVQYMQFSGSLHT K A G Q R S 2 1 0 1 0 2 1 3 0 3 0 1 0 0 2 0 1 0 1 0 0 0 18 1 1913.0007 A0A024R7L5;A0A024R7L8;Q92900;B3KY55 A0A024R7L5 783 800 UPF1 Regulator of nonsense transcripts 1 yes no 3 7.3231E-11 120.99 3 0.40873 0.53338 5.8848 3 Plateau 0.40873 0.53338 5.8848 3 0 Plateau NaN NaN NaN 0 0 Median 29394000 20123000 9271700 29394000 20123000 9271700 0 0 0 379 180 385 1279;1280;1281 1881;1882;1883;1884;1885;1886 1881 6 AGALHAQVER HLCRARRYCHDLGERAGALHAQVERLVQQA DLGERAGALHAQVERLVQQAGRQPDSPTAL R A G E R L 3 1 0 0 0 1 1 1 1 0 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1050.557 Q9BQG0;I3L1L3 Q9BQG0 897 906 MYBBP1A Myb-binding protein 1A yes no 2;3 1.8373E-08 128.86 7 2 0.63958 0.91265 11.219 9 Median 0.67157 0.91265 11.2 7 0 Median 0.60062 0.86953 11.401 2 0 Median 162990000 98226000 64764000 135850000 81423000 54425000 27141000 16803000 10338000 380 1708 386 1282;1283;1284;1285;1286;1287;1288;1289;1290 1887;1888;1889;1890;1891;1892;1893;1894;1895;1896;1897;1898;1899;1900 1890 14 AGALNSNDAFVLK ANSAGATRAVEVLPKAGALNSNDAFVLKTP PKAGALNSNDAFVLKTPSAAYLWVGTGASE K A G L K T 3 0 2 1 0 0 0 1 0 0 2 1 0 1 0 1 0 0 0 1 0 0 13 0 1318.6881 B7Z4U6;B7Z992;A0A0A0MS51;B7Z9A0;B7Z6N2;A0A0A0MT01;CON__Q3SX14;P06396;B7Z2X4;B3KS49 B7Z4U6 551 563 GSN Gelsolin yes no 2 0.011253 46.844 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4806300 4806300 0 0 0 0 4806300 4806300 0 + 381 392 387 1291;1292 1901;1902 1902 2 AGAPPPSGSAVSTAPQQK AYVRRMAAEATEWQKAGAPPPSGSAVSTAP PPPSGSAVSTAPQQKPIGKISKNKKKKLKK K A G Q K P 4 0 0 0 0 2 0 2 0 0 0 1 0 0 4 3 1 0 0 1 0 0 18 0 1649.8373 A0A024R704;P78362 A0A024R704 242 259 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal yes no 2 0.014427 69.846 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2890200 2890200 0 2890200 2890200 0 0 0 0 382 166 388 1293;1294 1903;1904 1904 2 AGDEIDEPSER KYHVMANHNSLPILKAGDEIDEPSERERLR PILKAGDEIDEPSERERLRTVLKRLGKLRC K A G E R E 1 1 0 2 0 0 3 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 11 0 1216.5208 B4DES6;B7Z9P6;G3XAG1;Q96ME7;B4E0X7 B4DES6 123 133 ZNF512 Zinc finger protein 512 yes no 2 0.0085529 54.608 2 1 0.68784 0.95033 0.4717 2 Median 0.70316 0.94717 NaN 1 0 Median 0.67285 0.95351 NaN 1 0 Median 10101000 7496800 2604700 4027800 3737100 290730 6073600 3759600 2313900 383 799 389 1295;1296;1297 1905;1906;1907 1907 3 AGDEIDEPSERER KYHVMANHNSLPILKAGDEIDEPSERERLR LKAGDEIDEPSERERLRTVLKRLGKLRCMR K A G E R L 1 2 0 2 0 0 4 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 13 1 1501.6645 B4DES6;B7Z9P6;G3XAG1;Q96ME7;B4E0X7 B4DES6 123 135 ZNF512 Zinc finger protein 512 yes no 3 0.003703 72.531 1 0.58852 0.81333 NaN 1 Median 0.58852 0.81333 NaN 1 0 Median NaN NaN NaN 0 0 Median 6108900 3829500 2279300 6108900 3829500 2279300 0 0 0 384 799 390 1298 1908 1908 1 AGDTVIPLYIPQCGECK AGIVESVGEGVTKLKAGDTVIPLYIPQCGE DTVIPLYIPQCGECKFCLNPKTNLCQKIRV K A G C K F 1 0 0 1 2 1 1 2 0 2 1 1 0 0 2 0 1 0 1 1 0 0 17 0 1919.9121 Q6IRT1;Q6FI45;P11766;D6RFE4;Q2VIM7;Q5U043 Q6IRT1 85 101 ADH5 S-(hydroxymethyl)glutathione dehydrogenase;Alcohol dehydrogenase class-3 yes no 2 5.2024E-06 72.652 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2461000 2461000 0 2461000 2461000 0 0 0 0 385 1258 391 1299 1909 1909 1 AGEAAELQDAEVESSAK PGPSPAGPTRDEPAKAGEAAELQDAEVESS EAAELQDAEVESSAKSGKP___________ K A G A K S 5 0 0 1 0 1 4 1 0 0 1 1 0 0 0 2 0 0 0 1 0 0 17 0 1703.785 Q6PK21;A0A0A0MRN5;Q05BV5;Q9NZT2 Q6PK21 493 509 OGFR Opioid growth factor receptor yes no 2 0.00061826 111.31 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 855690 855690 0 855690 855690 0 0 0 0 386 389 392 1300 1910 1910 1 AGEARPGPTAESASGPSEDPSVNFLK WEMGPPGNWSPRPPRAGEARPGPTAESASG SASGPSEDPSVNFLKNVGESVAAALSPLGI R A G L K N 4 1 1 1 0 0 3 3 0 0 1 1 0 1 4 4 1 0 0 1 0 0 26 1 2570.2249 Q13501;E7EMC7;E3WH17;E9PFW8;B4E3V2 Q13501 213 238 SQSTM1;SQSTM1-ALK Sequestosome-1;Tyrosine-protein kinase receptor yes no 3 2.9733E-21 121.84 4 2 0.54227 0.70867 87.475 6 Median 0.49123 0.64825 9.462 4 0 Median 2.2262 3.5509 1.4437 2 0 Median 114690000 64186000 50503000 85789000 55635000 30154000 28900000 8551600 20349000 387 1471 393 1301;1302;1303;1304;1305;1306 1911;1912;1913;1914;1915;1916;1917;1918;1919;1920;1921;1922;1923 1918 13 AGEGTYALDSESCMEK HYPPKLEGQAQAEAKAGEGTYALDSESCME GEGTYALDSESCMEKLAALSASLARVVVPA K A G E K L 2 0 0 1 1 0 3 2 0 0 1 1 1 0 0 2 1 0 1 0 0 0 16 0 1746.7077 B5MCF9;B2RDF2;O00541;B3KXD6 B5MCF9 243 258 PES1 Pescadillo homolog yes no 2 0.036497 70.089 2 0.64527 0.82061 NaN 1 Median 0.64527 0.82061 NaN 1 0 Median NaN NaN NaN 0 0 Median 2495300 1076600 1418600 2495300 1076600 1418600 0 0 0 388 735 394 1307;1308 1924;1925 1924 1 AGELLSDTIYR GWVPIDSLEVVRAKRAGELLSDTIYRQRPE RAKRAGELLSDTIYRQRPETLKFTSITDTP R A G Y R Q 1 1 0 1 0 0 1 1 0 1 2 0 0 0 0 1 1 0 1 0 0 0 11 0 1236.635 A0A087X1N7;P20929 A0A087X1N7 3653 3663 NEB Nebulin yes no 2 0.023028 71.692 1 0.70313 0.96932 NaN 1 Median 0.70313 0.96932 NaN 1 0 Median NaN NaN NaN 0 0 Median 69232000 38859000 30373000 69232000 38859000 30373000 0 0 0 389 372 395 1309 1926 1926 1 AGELTEDEVER AHVVLRKADIDLTKRAGELTEDEVERVITI LTKRAGELTEDEVERVITIMQNPRQYKIPD R A G E R V 1 1 0 1 0 0 4 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 11 0 1246.5677 P62269 P62269 56 66 RPS18 40S ribosomal protein S18 yes yes 2 2.5362E-10 166.19 3 2 0.94364 1.2749 20.935 4 Median 0.85364 1.1457 13.927 3 0 Median 1.1394 1.7208 NaN 1 0 Median 109050000 50964000 58085000 84725000 43964000 40761000 24324000 6999900 17324000 390 1402 396 1310;1311;1312;1313;1314 1927;1928;1929;1930;1931;1932 1927 6 AGELTPEEEAQYKK ______________________________ MAGELTPEEEAQYKKAFSAVDTDGNGTINA M A G K K A 2 0 0 0 0 1 4 1 0 0 1 2 0 0 1 0 1 0 1 0 0 0 14 1 1591.773 Q9NZT1;Q53H37 Q9NZT1 2 15 CALML5 Calmodulin-like protein 5 yes no 2 6.0477E-05 110.84 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 391 1773 397 1315;1316 1933;1934 1933 2 AGEMELKPFNGEDYTCITFQPDLSK YKKMFKQTWMDNMGRAGEMELKPFNGEDYT GEDYTCITFQPDLSKFKMQSLDKDIVALMV R A G S K F 1 0 1 2 1 1 3 2 0 1 2 2 1 2 2 1 2 0 1 0 0 0 25 1 2889.3201 P11388 P11388 201 225 TOP2A DNA topoisomerase 2-alpha yes yes 3 4.3835E-23 134.62 8 1 0.87534 1.0802 11.747 9 Median 0.87825 1.0833 10.042 8 0 Median 0.52323 0.8524 NaN 1 0 Median 247620000 138610000 109020000 147090000 75407000 71685000 100530000 63200000 37332000 392 1256 398;399 1317;1318;1319;1320;1321;1322;1323;1324;1325 1935;1936;1937;1938;1939;1940;1941;1942;1943;1944;1945;1946;1947;1948;1949 1943 505 15 AGEPNSPDAEEANSPDVTAGCDPAGVHPPR ASTGQPDNDVTEGQRAGEPNSPDAEEANSP DVTAGCDPAGVHPPR_______________ R A G P R - 5 1 2 3 1 0 3 3 1 0 0 0 0 0 6 2 1 0 0 2 0 0 30 0 3013.3108 Q08J23 Q08J23 738 767 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 3 2.7888E-06 75.297 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11238000 11238000 0 11238000 11238000 0 0 0 0 393 1451 400 1326;1327 1950;1951 1951 2 AGEQLAPFLPQLVPR SRKGAAFGFNVIATRAGEQLAPFLPQLVPR AGEQLAPFLPQLVPRLYRYQFDPNLGIRQA R A G P R L 2 1 0 0 0 2 1 1 0 0 3 0 0 1 3 0 0 0 0 1 0 0 15 0 1634.9144 J3KN16;Q5VYK3;B3KXF2 J3KN16 1284 1298 KIAA0368;ECM29 Proteasome-associated protein ECM29 homolog yes no 2 0.011412 33.409 1 0.86518 1.1548 NaN 1 Median 0.86518 1.1548 NaN 1 0 Median NaN NaN NaN 0 0 Median 3078500 1735900 1342600 3078500 1735900 1342600 0 0 0 394 1130 401 1328 1952 1952 1 AGEVFIHK ITEEEMRKLFEKYGKAGEVFIHKDKGFGFI LFEKYGKAGEVFIHKDKGFGFIRLETRTLA K A G H K D 1 0 0 0 0 0 1 1 1 1 0 1 0 1 0 0 0 0 0 1 0 0 8 0 899.4865 A8K525;A0A0S2Z4Z9;Q15233;H7C367;C9IZL7;C9JYS8;A0A0S2Z4E7 A8K525 100 107 NONO Non-POU domain-containing octamer-binding protein yes no 2 0.0012654 117.93 6 2 1.0696 1.5001 141.07 4 Median 0.35366 0.46025 7.1719 2 0 Median 3.5105 5.2597 17.501 2 0 Median 229390000 148060000 81334000 205470000 142830000 62636000 23926000 5227500 18698000 395 473 402 1329;1330;1331;1332;1333;1334;1335;1336 1953;1954;1955;1956;1957;1958;1959;1960;1961;1962 1959 10 AGFAGDDAPR DIAALVVDNGSGMCKAGFAGDDAPRAVFPS SGMCKAGFAGDDAPRAVFPSIVGRPRHQGV K A G P R A 3 1 0 2 0 0 0 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 10 0 975.44101 B7Z6P1;P68133;P68032;A8K3K1;D2JYH4;P63267;P62736;B3KW67;Q13707;Q7Z7J6;A6NL76;C9JUM1;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1;F8WCH0;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KUD3;Q6S8J3;A5A3E0;G5E9R0;E7EVS6;P0CG38;C9JZR7;A1E282;C9JTX5;P0CG39;L0R5C4;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 Q53GK6 19 28 ACTA1;ACTC1;ACTA2;ACTG2;ACTB;PS1TP5BP1;POTEE;POTEF;POTEI;POTEJ;POTEM;ACTG1 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2 1.4549E-21 162.25 3 2 0.68124 0.92486 91.355 5 Median 0.65822 0.90968 4.0316 3 0 Median 2.8501 4.7445 6.0998 2 0 Median 4665300000 2420400000 2244900000 3837200000 2204900000 1632300000 828090000 215490000 612600000 396 1388;1420;914 403 1337;1338;1339;1340;1341 1963;1964;1965;1966;1967;1968;1969;1970;1971;1972 1967 10 AGFIQDTSLILYEEVKPNLTER ISCKIRDLLPVMCDRAGFIQDTSLILYEEV SLILYEEVKPNLTERIQDYDVSLDKALDEL R A G E R I 1 1 1 1 0 1 3 1 0 2 3 1 0 1 1 1 2 0 1 1 0 0 22 1 2535.3221 Q6U8A4;Q93009;B7ZAX6;B7Z855;H3BND8;B7Z7T5 Q6U8A4 734 755 USP7 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 7 yes no 3 3.1201E-08 89.604 4 1 0.51827 0.6754 42.766 5 Median 0.50547 0.6626 11.853 4 0 Median 1.0088 1.6784 NaN 1 0 Median 78666000 47854000 30813000 60049000 39661000 20388000 18617000 8192600 10424000 397 1600 404 1342;1343;1344;1345;1346 1973;1974;1975;1976;1977;1978;1979;1980 1976 8 AGFVPVYLR VSYGLTPRLLKFWKRAGFVPVYLRQTPNDL LKFWKRAGFVPVYLRQTPNDLTGEHSCIML R A G L R Q 1 1 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 1 2 0 0 9 0 1020.5757 Q9H0A0;A0A087WV29 Q9H0A0 726 734 NAT10 N-acetyltransferase 10 yes no 2 0.0016593 94.262 1 2 0.65789 1.0612 8.3727 3 Median 0.88416 1.2259 NaN 1 0 Median 0.65063 1.0604 0.10551 2 0 Median 209150000 120580000 88570000 55941000 30667000 25274000 153210000 89910000 63296000 398 1730 405 1347;1348;1349 1981;1982;1983 1981 3 AGGAAVVITEPEHTK ______________________________ AGGAAVVITEPEHTKERVKLEGSKCKGQLL K A G T K E 3 0 0 0 0 0 2 2 1 1 0 1 0 0 1 0 2 0 0 2 0 0 15 0 1478.7729 A5PLK7;A0A024RAC5;Q9P258 A5PLK7 13 27 RCC2 Protein RCC2 yes no 2 0.0091019 48.44 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 399 239 406 1350 1984 1984 1 AGGEAGVTLGQPHLSR ______________________________ GGEAGVTLGQPHLSRQDLTTLDVTKLTPLS M A G S R Q 2 1 0 0 0 1 1 4 1 0 2 0 0 0 1 1 1 0 0 1 0 0 16 0 1548.8009 P41091;Q2VIR3;F8W810 P41091 2 17 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 1.3234E-18 162.67 4 2 0.6317 0.84984 37.203 5 Median 0.6317 0.84984 11.498 3 0 Plateau 1.0262 1.4409 6.7892 2 0 Median 49871000 27159000 22711000 29385000 16593000 12792000 20486000 10566000 9919200 400 1333 407 1351;1352;1353;1354;1355;1356 1985;1986;1987;1988;1989;1990;1991;1992;1993 1986 9 AGGFVISDDK SPGDVLDHTYQELFRAGGFVISDDKILEAV QELFRAGGFVISDDKILEAVTLVQLKEIIK R A G D K I 1 0 0 2 0 0 0 2 0 1 0 1 0 1 0 1 0 0 0 1 0 0 10 0 1007.4924 Q5VWN6;Q6IPC8 Q5VWN6 2279 2288 FAM208B;C10orf18 Protein FAM208B yes no 2 0.045199 66.429 1 0.94978 1.2254 NaN 1 Median 0.94978 1.2254 NaN 1 0 Median NaN NaN NaN 0 0 Median 37702000 21623000 16079000 37702000 21623000 16079000 0 0 0 401 1579 408 1357 1994 1994 1 AGGGAGDPGLGAAAAPAPETR ______________________________ DPGLGAAAAPAPETREHLSKVLVIGELGVG M A G T R E 7 1 0 1 0 0 1 6 0 0 1 0 0 0 3 0 1 0 0 0 0 0 21 0 1762.8598 B2R5I8;Q13637 B2R5I8 2 22 RAB32 Ras-related protein Rab-32 yes no 2 0.0024981 75.316 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1540600 1540600 0 1540600 1540600 0 0 0 0 402 690 409 1358 1995 1995 1 AGGIETIANEFSDR GLDVGSQSCYIAVARAGGIETIANEFSDRC RAGGIETIANEFSDRCTPSVISFGSKNRTI R A G D R C 2 1 1 1 0 0 2 2 0 2 0 0 0 1 0 1 1 0 0 0 0 0 14 0 1478.7001 A0A024RDQ0;A0A024RDS1;Q92598;R4GN69 A0A024RDQ0 20 33 HSPH1 Heat shock protein 105 kDa yes no 2 4.7419E-06 124.42 4 0.30881 0.41357 8.7491 4 Median 0.30881 0.41357 8.7491 4 0 Median NaN NaN NaN 0 0 Median 29717000 21786000 7930800 29717000 21786000 7930800 0 0 0 403 320 410 1359;1360;1361;1362 1996;1997;1998;1999;2000 1997 5 AGGPPQVAGAQAACSEDR MQDADEPADSGGEGRAGGPPQVAGAQAACS PPQVAGAQAACSEDRMTLLLRLRAQTKQQL R A G D R M 5 1 0 1 1 2 1 3 0 0 0 0 0 0 2 1 0 0 0 1 0 0 18 0 1740.7849 B3KVZ3;A0A0S2Z5T0;Q9H3R5;D6RBJ6 B3KVZ3 22 39 CENPH Centromere protein H yes no 2 3.7154E-31 174.94 5 2 0.73115 0.98575 44.293 5 Median 0.76905 1.0233 47.148 4 0 Median 0.643 0.84786 NaN 1 0 Median 26448000 15134000 11313000 20923000 11036000 9886500 5524800 4098100 1426700 404 482 411 1363;1364;1365;1366;1367;1368;1369 2001;2002;2003;2004;2005;2006;2007;2008;2009;2010;2011;2012 2003 12 AGGPTTPLSPTR ______________________________ GSRAGGPTTPLSPTRLSRLQEKEELRELND R A G T R L 1 1 0 0 0 0 0 2 0 0 1 0 0 0 3 1 3 0 0 0 0 0 12 0 1153.6091 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;A0A0D9SFY5 P20700 15 26 LMNB1 Lamin-B1 yes no 2 2.9997E-07 141.91 3 1 1.4846 1.9776 11.669 3 Median 1.4846 1.9776 11.669 3 0 Median NaN NaN NaN 0 0 Median 73670000 22601000 51068000 63851000 22601000 41249000 9818800 0 9818800 405 1285 412 1370;1371;1372;1373 2013;2014;2015;2016 2013 4 AGGVGLNLSAASR NTEAGSPTIMLLSLKAGGVGLNLSAASRVF LKAGGVGLNLSAASRVFLMDPAWNPAAEDQ K A G S R V 3 1 1 0 0 0 0 3 0 0 2 0 0 0 0 2 0 0 0 1 0 0 13 0 1171.6309 Q59GQ7;A0A0C4DGA6;Q14527;A8K5B6;H7C5K0 Q59GQ7 914 926 HLTF Helicase-like transcription factor yes no 2 1.069E-16 142.83 3 0.54706 0.75196 10.712 3 Median 0.54706 0.75196 10.712 3 0 Median NaN NaN NaN 0 0 Median 23439000 15763000 7676200 23439000 15763000 7676200 0 0 0 406 425 413 1374;1375;1376 2017;2018;2019;2020 2020 4 AGIEAGNINITSGEVFEIEEHISER LAKGESGILGKDGLKAGIEAGNINITSGEV TSGEVFEIEEHISERQAEVLAEFERRKRAR K A G E R Q 2 1 2 0 0 0 6 3 1 5 0 0 0 1 0 2 1 0 0 1 0 0 25 0 2713.3195 Q6IAP9;Q5T1M7;B2R7V4;Q59EL4;O43172 Q6IAP9 57 81 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes no 3 4.5463E-05 67.877 1 0.66705 0.93224 NaN 1 Median 0.66705 0.93224 NaN 1 0 Median NaN NaN NaN 0 0 Median 3419500 2290800 1128700 3419500 2290800 1128700 0 0 0 407 708 414 1377 2021 2021 1 AGIEGPLLASDVGR RPLLPKDMERLTSLRAGIEGPLLASDVGRD RAGIEGPLLASDVGRDRSAASPVVSSMPER R A G G R D 2 1 0 1 0 0 1 3 0 1 2 0 0 0 1 1 0 0 0 1 0 0 14 0 1353.7252 P18583;H7C1M2 P18583 1750 1763 SON Protein SON yes no 2 0.00097785 68.536 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1736300 0 1736300 0 0 0 1736300 0 1736300 408 1282 415 1378;1379 2022;2023 2023 2 AGIFQPHVR GLSETILAVGLVKPKAGIFQPHVRHLLVLA GLVKPKAGIFQPHVRHLLVLATPVDIVILG K A G V R H 1 1 0 0 0 1 0 1 1 1 0 0 0 1 1 0 0 0 0 1 0 0 9 0 1023.5614 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 116 124 NUP155 Nuclear pore complex protein Nup155 yes no 3 0.01076 41.448 1 0.27983 0.3746 NaN 1 Median 0.27983 0.3746 NaN 1 0 Median NaN NaN NaN 0 0 Median 17009000 12731000 4278100 17009000 12731000 4278100 0 0 0 409 29 416 1380 2024 2024 1 AGIFQSVK YRNYDVMKDFEEMRKAGIFQSVK_______ DFEEMRKAGIFQSVK_______________ K A G V K - 1 0 0 0 0 1 0 1 0 1 0 1 0 1 0 1 0 0 0 1 0 0 8 0 848.4756 A0A024R9B7;P09669 A0A024R9B7 68 75 COX6C Cytochrome c oxidase subunit 6C yes no 2 0.005579 89.142 1 0.74458 0.92021 NaN 1 Median 0.74458 0.92021 NaN 1 0 Median NaN NaN NaN 0 0 Median 28101000 14947000 13154000 28101000 14947000 13154000 0 0 0 410 216 417 1381 2025 2025 1 AGIIASAR VDHGKSTLTDSLVCKAGIIASARAGETRFT TDSLVCKAGIIASARAGETRFTDTRKDEQE K A G A R A 3 1 0 0 0 0 0 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 8 0 757.44464 P13639;B4DPU3;Q6PK56;B4DRE8;B4DMC6 P13639 43 50 EEF2 Elongation factor 2 yes no 2 0.0063835 107.59 1 0.48945 0.65233 NaN 1 Median 0.48945 0.65233 NaN 1 0 Median NaN NaN NaN 0 0 Median 11929000 8035500 3893100 11929000 8035500 3893100 0 0 0 411 1264 418 1382 2026 2026 1 AGIICQLNAR VLHEVMEQQTLSIAKAGIICQLNARTSVLA LSIAKAGIICQLNARTSVLAAANPIESQWN K A G A R T 2 1 1 0 1 1 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 10 0 1114.5917 B4DLA6;B3KMX0;A0A024R7U6;P33991 B4DLA6 561 570 MCM4 DNA replication licensing factor MCM4 yes no 2 0.020481 54.157 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7007700 7007700 0 7007700 7007700 0 0 0 0 412 185 419 1383 2027 2027 1 AGILTTLNAR AIHEVMEQQTISIAKAGILTTLNARCSILA ISIAKAGILTTLNARCSILAAANPAYGRYN K A G A R C 2 1 1 0 0 0 0 1 0 1 2 0 0 0 0 0 2 0 0 0 0 0 10 0 1028.5978 B2RBA6;A0A0S2Z4A5;P33993;B3KUD7;B4DDF5;C6EMX8;Q9H4N9 B2RBA6 472 481 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 2 0.00024018 91.318 4 1 0.42445 0.56836 64.859 5 Median 0.387 0.52217 20.722 4 0 Median 1.5302 2.2007 NaN 1 0 Median 95830000 62487000 33343000 84696000 57921000 26775000 11134000 4565800 6568400 413 464 420 1384;1385;1386;1387;1388 2028;2029;2030;2031;2032;2033 2031 6 AGISFIIK ENYDLATLKWILENKAGISFIIKRPFLEPK KWILENKAGISFIIKRPFLEPKKHVGGRVM K A G I K R 1 0 0 0 0 0 0 1 0 3 0 1 0 1 0 1 0 0 0 0 0 0 8 0 847.51674 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;X5D7Q9;A0A0A0VEB4 X5D2J9 178 185 GTF2I;GTF2I-RARA General transcription factor II-I yes no 2 0.022203 55.676 1 0.44356 0.55179 NaN 1 Median 0.44356 0.55179 NaN 1 0 Median NaN NaN NaN 0 0 Median 7965600 5109200 2856400 7965600 5109200 2856400 0 0 0 414 651 421 1389 2034 2034 1 AGITTIEAVK ______________________________ ______________________________ M A G V K R 2 0 0 0 0 0 1 1 0 2 0 1 0 0 0 0 2 0 0 1 0 0 10 0 1001.5757 Q5HYB6;B2RDE1;A0A0S2Z4I4;A0A0S2Z4G8;A0A0S2Z4G4;A0A087WWU8;D6R904;Q8NAG3;B4DWT5;Q5VU61;D6RFM2 Q5HYB6 2 11 DKFZp686J1372;TPM3 yes no 1 4.8079E-05 135.71 2 0.75039 0.96543 11.575 2 Median 0.75039 0.96543 11.575 2 0 Median NaN NaN NaN 0 0 Median 5049000 2781400 2267500 5049000 2781400 2267500 0 0 0 415 465 422 1390;1391 2035;2036 2036 2 AGKLDPHLVLDQLR NPNFVRCIIPNHEKKAGKLDPHLVLDQLRC KAGKLDPHLVLDQLRCNGVLEGIRICRQGF K A G L R C 1 1 0 2 0 1 0 1 1 0 4 1 0 0 1 0 0 0 0 1 0 0 14 1 1573.894 A0A024R1N1;P35579;Q86XU5;B4E3S1;A0A0U4BW16;P35580 A0A024R1N1 680 693 MYH9;MYH10 Myosin-9;Myosin-10 no no 3 2.9924E-05 81.128 2 0.76134 1.0046 20.819 2 Median 0.76134 1.0046 20.819 2 0 Median NaN NaN NaN 0 0 Median 37747000 20901000 16846000 37747000 20901000 16846000 0 0 0 416 61;490;1320 423 1392;1393 2037;2038;2039 2039 3 AGLAYHLR MTLKCHHCGKPYRSKAGLAYHLRSEHGPIS GKPYRSKAGLAYHLRSEHGPISFFPESGQP K A G L R S 2 1 0 0 0 0 0 1 1 0 2 0 0 0 0 0 0 0 1 0 0 0 8 0 899.49774 B4DES6;B7Z9P6;G3XAG1;Q96ME7;Q658M0;B4E0X7 B4DES6 195 202 ZNF512;DKFZp666L156 Zinc finger protein 512 yes no 2 0.034209 49.358 2 0.68425 0.98453 6.9971 2 Median NaN NaN NaN 0 0 Median 0.68425 0.98453 6.9971 2 0 Median 13434000 7801700 5632800 0 0 0 13434000 7801700 5632800 417 799 424 1394;1395 2040;2041 2041 2 AGLESGAEPGDGDSDTTK IKKEKKKSKKDKKAKAGLESGAEPGDGDSD ESGAEPGDGDSDTTKKKKKKKKAKEVELVS K A G T K K 2 0 0 3 0 0 2 4 0 0 1 1 0 0 1 2 2 0 0 0 0 0 18 0 1705.7279 O60832 O60832 481 498 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2 1.5304E-50 198.52 5 2 0.73535 0.91222 10.835 6 Median 0.74917 0.95616 6.6083 4 0 Median 0.49674 0.79283 2.3201 2 0 Median 150200000 92397000 57804000 58265000 31600000 26665000 91935000 60796000 31139000 418 1193 425 1396;1397;1398;1399;1400;1401;1402 2042;2043;2044;2045;2046;2047;2048;2049;2050;2051;2052;2053;2054 2044 13 AGLESGAEPGDGDSDTTKK IKKEKKKSKKDKKAKAGLESGAEPGDGDSD SGAEPGDGDSDTTKKKKKKKKAKEVELVSE K A G K K K 2 0 0 3 0 0 2 4 0 0 1 2 0 0 1 2 2 0 0 0 0 0 19 1 1833.8228 O60832 O60832 481 499 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 3 8.076E-05 85.176 4 2 0.50581 0.68768 45.397 4 Median 0.69373 0.86413 48.478 3 0 Plateau 0.59365 0.89735 NaN 1 0 Median 20657000 14106000 6550700 13029000 8678100 4351100 7627400 5427900 2199600 419 1193 426 1403;1404;1405;1406;1407;1408 2055;2056;2057;2058;2059;2060;2061 2056 7 AGLGSGLSLSGLVHPELSR AGLLLGEAGKQLRRRAGLGSGLSLSGLVHP SGLSLSGLVHPELSRSGELAVRALEQFATV R A G S R S 1 1 0 0 0 0 1 4 1 0 5 0 0 0 1 4 0 0 0 1 0 0 19 0 1849.0058 B3KPA6;Q53HR2;B4DEA8;P49748;B3KPX1;G3V1M7 B3KPA6 437 455 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 3 3.7284E-07 135.57 3 3 1.2063 1.9129 32.074 4 Linear 0.83943 1.1165 14.327 2 0 Median 1.1906 1.9018 6.693 2 0 Median 141000000 63833000 77162000 44269000 26736000 17532000 96727000 37097000 59630000 420 763 427 1409;1410;1411;1412;1413;1414 2062;2063;2064;2065;2066;2067;2068;2069;2070 2068 9 AGLGSPERPPK PEETREPGSPPSVQRAGLGSPERPPKTSPG SVQRAGLGSPERPPKTSPGSPRLQQGAGLE R A G P K T 1 1 0 0 0 0 1 2 0 0 1 1 0 0 3 1 0 0 0 0 0 0 11 1 1107.6037 Q9H6F5;H0YG79;Q6ZW18 Q9H6F5 54 64 CCDC86 Coiled-coil domain-containing protein 86 yes no 3 0.046841 49.466 1 0.66902 0.89061 NaN 1 Median 0.66902 0.89061 NaN 1 0 Median NaN NaN NaN 0 0 Median 2070900 1032200 1038700 2070900 1032200 1038700 0 0 0 421 1737 428 1415 2071 2071 1 AGLLHNILPSQSTDLHHSVGTELLSLVYK SRLAAVVSACKQLHRAGLLHNILPSQSTDL LHHSVGTELLSLVYKGIAPGDERQCLPSLD R A G Y K G 1 0 1 1 0 1 1 2 3 1 7 1 0 0 1 4 2 0 1 2 0 0 29 0 3141.6822 P78527 P78527 1461 1489 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 4 0.050582 15.641 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33105000 33105000 0 0 0 0 33105000 33105000 0 422 1427 429 1416 2072 2072 1 AGLLQNNLEEGNDLK PSDQGVIATMKRNYRAGLLQNNLEEGNDLK AGLLQNNLEEGNDLKSFWKKLTLLDALYEI R A G L K S 1 0 3 1 0 1 2 2 0 0 4 1 0 0 0 0 0 0 0 0 0 0 15 0 1626.8213 Q9Y4A0 Q9Y4A0 340 354 JRKL Jerky protein homolog-like yes yes 2 3.9667E-06 116.74 4 0.69793 0.90586 23.626 2 Median 0.69793 0.90586 23.626 2 0 Median NaN NaN NaN 0 0 Median 9455000 6859600 2595400 9455000 6859600 2595400 0 0 0 423 1824 430 1417;1418;1419;1420 2073;2074;2075;2076 2074 4 AGLLQVYIHTQK THQSLLMLMDSPLNRAGLLQVYIHTQKNVL LNRAGLLQVYIHTQKNVLIEVNPQTRIPRT R A G Q K N 1 0 0 0 0 2 0 1 1 1 2 1 0 0 0 0 1 0 1 1 0 0 12 0 1369.7718 A8K6D2;Q92979;B4DQC7;V9GYP5;A0A087WWQ2;B4DP65;A0A087WVM7;A0A0U3B3H7 A8K6D2 103 114 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 2;3 9.3869E-16 169.99 5 2 1.0184 1.3044 13.021 6 Median 1.0393 1.3131 8.1556 5 0 Median 0.6946 1.0431 NaN 1 0 Median 166200000 84637000 81567000 137760000 64237000 73520000 28448000 20400000 8047100 424 623 431 1421;1422;1423;1424;1425;1426;1427 2077;2078;2079;2080;2081;2082;2083;2084;2085;2086;2087;2088 2081 12 AGLLSQAK PGTRDPTRLRPVYARAGLLSQAKGSAYLEA LRPVYARAGLLSQAKGSAYLEAGGTKVLCA R A G A K G 2 0 0 0 0 1 0 1 0 0 2 1 0 0 0 1 0 0 0 0 0 0 8 0 786.45995 Q5RKV6 Q5RKV6 43 50 EXOSC6 Exosome complex component MTR3 yes yes 2 0.041766 45.382 1 0.29225 0.40573 NaN 1 Median NaN NaN NaN 0 0 Median 0.29225 0.40573 NaN 1 0 Median 3762100 2285600 1476500 0 0 0 3762100 2285600 1476500 425 1562 432 1428 2089 2089 1 AGLLVLAVLSDGAGDHIR MLEEALRSESPYQRKAGLLVLAVLSDGAGD LVLAVLSDGAGDHIRQRLLPPLLQIVCKGL K A G I R Q 3 1 0 2 0 0 0 3 1 1 4 0 0 0 0 1 0 0 0 2 0 0 18 0 1775.9894 B3KPY9;Q6I9Y8;B3KSQ4;H0YN14;D3DS63;B3KTB3;B3KT38;B3KPS9;B3KQ33;Q59FI4;Q8TEX9 B3KPY9 33 50 IPO4 Importin-4 yes no 3 0.00042729 115.8 1 0.36557 0.5082 NaN 1 Median 0.36557 0.5082 NaN 1 0 Median NaN NaN NaN 0 0 Median 1893800 1467500 426270 1893800 1467500 426270 0 0 0 426 766 433 1429 2090 2090 1 AGLPIYECNSR LHKFAYNDQGQVRLRAGLPIYECNSRCRCG VRLRAGLPIYECNSRCRCGYDCPNRVVQKG R A G S R C 1 1 1 0 1 0 1 1 0 1 1 0 0 0 1 1 0 0 1 0 0 0 11 0 1278.6027 O43463;B4DMP6 O43463 215 225 SUV39H1 Histone-lysine N-methyltransferase SUV39H1 yes no 2 0.0030864 91.265 4 2 0.70836 1.0018 7.0427 5 Median 0.80361 1.078 9.9468 3 0 Plateau 0.70424 0.99669 0.71971 2 0 Median 105970000 70816000 35155000 83628000 57187000 26442000 22342000 13629000 8713300 427 1185 434 1430;1431;1432;1433;1434;1435 2091;2092;2093;2094;2095;2096 2093 6 AGLQFPVGR QGGKARAKAKTRSSRAGLQFPVGRVHRLLR KTRSSRAGLQFPVGRVHRLLRKGNYAERVG R A G G R V 1 1 0 0 0 1 0 2 0 0 1 0 0 1 1 0 0 0 0 1 0 0 9 0 943.52395 Q8IUE6;Q08AJ9;A0A024R017;Q93077;Q7L7L0;P04908;A3KPC7;A0A024RAS2;B2R5B3;A4FTV9;A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8;B2R5B6;Q71UI9;P0C0S5;C9J0D1;Q96QV6;P16104 A3KPC7 22 30 HIST2H2AB;HIST1H2AB;HIST1H2AC;HIST3H2A;HIST1H2AH;H2AFJ;HIST1H2AK;HIST1H2AJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFV;H2AFZ;HIST1H2AA;H2AFX Histone H2A type 2-B;Histone H2A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A.V;Histone H2A.Z;Histone H2A type 1-A;Histone H2AX no no 2;3 1.4058E-08 158.03 180 16 0.69275 0.96198 9.5329 81 Median 0.69865 0.96252 9.7685 72 0 Median 0.63321 1.0338 7.4869 9 0 Plateau 39716000000 38235000000 1480900000 32481000000 31139000000 1341900000 7235300000 7096300000 139040000 428 248;26;1622;689;1271;1249 435 1436;1437;1438;1439;1440;1441;1442;1443;1444;1445;1446;1447;1448;1449;1450;1451;1452;1453;1454;1455;1456;1457;1458;1459;1460;1461;1462;1463;1464;1465;1466;1467;1468;1469;1470;1471;1472;1473;1474;1475;1476;1477;1478;1479;1480;1481;1482;1483;1484;1485;1486;1487;1488;1489;1490;1491;1492;1493;1494;1495;1496;1497;1498;1499;1500;1501;1502;1503;1504;1505;1506;1507;1508;1509;1510;1511;1512;1513;1514;1515;1516;1517;1518;1519;1520;1521;1522;1523;1524;1525;1526;1527;1528;1529;1530;1531;1532;1533;1534;1535;1536;1537;1538;1539;1540;1541;1542;1543;1544;1545;1546;1547;1548;1549;1550;1551;1552;1553;1554;1555;1556;1557;1558;1559;1560;1561;1562;1563;1564;1565;1566;1567;1568;1569;1570;1571;1572;1573;1574;1575;1576;1577;1578;1579;1580;1581;1582;1583;1584;1585;1586;1587;1588;1589;1590;1591;1592;1593;1594;1595;1596;1597;1598;1599;1600;1601;1602;1603;1604;1605;1606;1607;1608;1609;1610;1611;1612;1613;1614;1615;1616;1617;1618;1619;1620;1621;1622;1623;1624;1625;1626;1627;1628;1629;1630;1631 2097;2098;2099;2100;2101;2102;2103;2104;2105;2106;2107;2108;2109;2110;2111;2112;2113;2114;2115;2116;2117;2118;2119;2120;2121;2122;2123;2124;2125;2126;2127;2128;2129;2130;2131;2132;2133;2134;2135;2136;2137;2138;2139;2140;2141;2142;2143;2144;2145;2146;2147;2148;2149;2150;2151;2152;2153;2154;2155;2156;2157;2158;2159;2160;2161;2162;2163;2164;2165;2166;2167;2168;2169;2170;2171;2172;2173;2174;2175;2176;2177;2178;2179;2180;2181;2182;2183;2184;2185;2186;2187;2188;2189;2190;2191;2192;2193;2194;2195;2196;2197;2198;2199;2200;2201;2202;2203;2204;2205;2206;2207;2208;2209;2210;2211;2212;2213;2214;2215;2216;2217;2218;2219;2220;2221;2222;2223;2224;2225;2226;2227;2228;2229;2230;2231;2232;2233;2234;2235;2236;2237;2238;2239;2240;2241;2242;2243;2244;2245;2246;2247;2248;2249;2250;2251;2252;2253;2254;2255;2256;2257;2258;2259;2260;2261;2262;2263;2264;2265;2266;2267;2268;2269;2270;2271;2272;2273;2274;2275;2276;2277;2278;2279;2280;2281;2282;2283;2284;2285;2286;2287;2288;2289;2290;2291;2292;2293;2294;2295;2296;2297;2298;2299;2300;2301;2302;2303;2304;2305;2306;2307;2308;2309;2310;2311;2312;2313;2314;2315;2316;2317;2318;2319;2320;2321;2322;2323;2324;2325;2326;2327;2328;2329;2330;2331;2332;2333;2334;2335;2336;2337;2338;2339;2340;2341;2342;2343;2344;2345;2346;2347;2348;2349;2350;2351;2352;2353;2354;2355;2356;2357;2358;2359;2360;2361;2362;2363;2364;2365;2366;2367;2368;2369;2370;2371;2372;2373;2374;2375;2376;2377;2378 2368 282 AGLSEEDDSLVDVYYR ESGSEQERVSKKPKKAGLSEEDDSLVDVYY GLSEEDDSLVDVYYREGKEEAEETNVLPKE K A G Y R E 1 1 0 3 0 0 2 1 0 0 2 0 0 0 0 2 0 0 2 2 0 0 16 0 1829.8319 Q14690 Q14690 1490 1505 PDCD11 Protein RRP5 homolog yes yes 2 1.6899E-06 110.15 4 2 0.84797 1.1471 20.397 6 Median 0.87847 1.1965 16.346 4 0 Median 0.66438 0.93411 4.9418 2 0 Median 40712000 23185000 17527000 20150000 10388000 9762200 20562000 12797000 7764500 429 1494 436 1632;1633;1634;1635;1636;1637 2379;2380;2381;2382;2383;2384;2385;2386;2387 2387 9 AGLSPANCQSDR EKGISGSKAAGEGSKAGLSPANCQSDRVNL GSKAGLSPANCQSDRVNLEKSLLMKKAALP K A G D R V 2 1 1 1 1 1 0 1 0 0 1 0 0 0 1 2 0 0 0 0 0 0 12 0 1274.5673 Q14692 Q14692 549 560 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.0077473 46.406 1 1.1267 1.5286 NaN 1 Median 1.1267 1.5286 NaN 1 0 Median NaN NaN NaN 0 0 Median 3203600 1422000 1781600 3203600 1422000 1781600 0 0 0 430 1495 437 1638 2388 2388 1 AGLSPANCQSDRVNLEK EKGISGSKAAGEGSKAGLSPANCQSDRVNL LSPANCQSDRVNLEKSLLMKKAALPTFDSG K A G E K S 2 1 2 1 1 1 1 1 0 0 2 1 0 0 1 2 0 0 0 1 0 0 17 1 1857.9003 Q14692 Q14692 549 565 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 0.00044631 85.988 2 1.0681 1.4121 3.7201 2 Median 1.0681 1.4121 3.7201 2 0 Median NaN NaN NaN 0 0 Median 17671000 9117700 8552800 17671000 9117700 8552800 0 0 0 431 1495 438 1639;1640 2389;2390;2391;2392 2389 4 AGLSQSLFER HCQLGPVVMCKKAAKAGLSQSLFERLVVLG KKAAKAGLSQSLFERLVVLGIRPIRLQVQY K A G E R L 1 1 0 0 0 1 1 1 0 0 2 0 0 1 0 2 0 0 0 0 0 0 10 0 1106.572 A0A024R7L5;A0A024R7L8;Q92900 A0A024R7L5 678 687 UPF1 Regulator of nonsense transcripts 1 yes no 2 0.0015461 83.783 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5309500 5309500 0 5309500 5309500 0 0 0 0 432 180 439 1641 2393 2393 1 AGLTEPVLIR LFSATLPKLLVEFARAGLTEPVLIRLDVDT VEFARAGLTEPVLIRLDVDTKLNEQLKTSF R A G I R L 1 1 0 0 0 0 1 1 0 1 2 0 0 0 1 0 1 0 0 1 0 0 10 0 1067.6339 Q8TDD1 Q8TDD1 291 300 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 2.59E-11 140.5 4 2 0.74992 1.0587 12.043 6 Median 0.84982 1.1497 13.24 4 0 Median 0.63375 0.97103 1.947 2 0 Median 147850000 85112000 62738000 108540000 60392000 48146000 39313000 24720000 14592000 433 1658 440 1642;1643;1644;1645;1646;1647 2394;2395;2396;2397;2398;2399;2400;2401;2402 2399 9 AGLVGPEFHEK DPATSARLTVDEAVRAGLVGPEFHEKLLSA EAVRAGLVGPEFHEKLLSAEKAVTGYRDPY R A G E K L 1 0 0 0 0 0 2 2 1 0 1 1 0 1 1 0 0 0 0 1 0 0 11 0 1182.6033 Q15149;D3DWL0 Q15149 3221 3231 PLEC;PLEC1 Plectin yes no 2;3 0.0037475 84.687 6 0.71541 0.91299 25.219 5 Median 0.71541 0.91299 25.219 5 0 Median NaN NaN NaN 0 0 Median 142230000 78959000 63275000 142230000 78959000 63275000 0 0 0 434 1507 441 1648;1649;1650;1651;1652;1653 2403;2404;2405;2406;2407;2408;2409;2410;2411 2410 9 AGMTHIVR DPSKPVHLTAFLGYKAGMTHIVREVDRPGS TAFLGYKAGMTHIVREVDRPGSKVNKKEVV K A G V R E 1 1 0 0 0 0 0 1 1 1 0 0 1 0 0 0 1 0 0 1 0 0 8 0 883.46981 P39023;Q8TBW1;Q96QL0;B3KS36;H7C422;H7C3M2;B4DN06;F8WCR1 P39023 51 58 RPL3 60S ribosomal protein L3 yes no 2 0.0020334 111.65 3 1 0.7257 0.96272 6.9238 4 Median 0.7253 0.98854 6.9661 3 0 Median 0.7261 0.92334 NaN 1 0 Median 58511000 31262000 27249000 53735000 28323000 25411000 4776100 2938900 1837200 435 1330 442 1654;1655;1656;1657 2412;2413;2414;2415;2416 2415 5 AGNEKEEGETADTVGCCSLR QRAVALYFIDKLALRAGNEKEEGETADTVG EEGETADTVGCCSLRVEHINLHPELDGQEY R A G L R V 2 1 1 1 2 0 4 3 0 0 1 1 0 0 0 1 2 0 0 1 0 0 20 1 2181.9267 P11387;B9EG90 P11387 489 508 TOP1 DNA topoisomerase 1 yes no 2;3 4.5301E-32 172.32 7 2 0.72589 0.95291 19.657 7 Median 0.74705 0.99469 22.535 5 0 Median 0.60063 0.92551 0.081674 2 0 Median 158460000 88700000 69755000 140100000 77119000 62981000 18356000 11582000 6774500 436 1255 443 1658;1659;1660;1661;1662;1663;1664;1665;1666 2417;2418;2419;2420;2421;2422;2423;2424;2425;2426;2427;2428;2429;2430;2431 2421 15 AGNFYVPAEPK QMYRTEIRMARMARKAGNFYVPAEPKLAFV MARKAGNFYVPAEPKLAFVIRIRGINGVSP K A G P K L 2 0 1 0 0 0 1 1 0 0 0 1 0 1 2 0 0 0 1 1 0 0 11 0 1191.5924 A0A024R814;P18124;A8MUD9;C9JIJ5;C9JZ88 A0A024R814 89 99 RPL7 60S ribosomal protein L7 yes no 2 0.0036555 92.239 3 1 0.75104 0.99317 2.686 4 Median 0.76338 1.0103 3.0941 3 0 Median 0.6243 0.97633 NaN 1 0 Median 996940000 574640000 422290000 910140000 522110000 388030000 86793000 52530000 34263000 437 189 444 1667;1668;1669;1670 2432;2433;2434;2435;2436;2437 2434 6 AGNLGGGVVTIER NFEQFLQERIKVNGKAGNLGGGVVTIERSK GKAGNLGGGVVTIERSKSKITVTSEVPFSK K A G E R S 1 1 1 0 0 0 1 4 0 1 1 0 0 0 0 0 1 0 0 2 0 0 13 0 1241.6728 K7ERI7;K7EJT5;K7EP65;K7EKS7;K7ELC4;K7EMH1;Q7Z4W8;P35268 Q7Z4W8 20 32 RPL22 60S ribosomal protein L22 no no 2 2.664E-08 125.23 3 2 0.80539 1.0957 27.347 5 Median 0.86771 1.2029 4.8026 3 0 Plateau 0.42338 0.70415 1.1699 2 0 Median 1649300000 1006400000 642810000 897300000 477000000 420300000 751960000 529450000 222510000 438 1153;1319 445 1671;1672;1673;1674;1675 2438;2439;2440;2441;2442;2443;2444;2445;2446;2447;2448;2449;2450;2451;2452 2446 15 AGPESDAQYQFTGIK ______________________________ AGPESDAQYQFTGIKKYFNSYTLTGRMNCV M A G I K K 2 0 0 1 0 2 1 2 0 1 0 1 0 1 1 1 1 0 1 0 0 0 15 0 1610.7577 Q96IX5 Q96IX5 2 16 USMG5 Up-regulated during skeletal muscle growth protein 5 yes yes 2 3.0645E-50 223.08 3 0.76944 0.97324 17.078 3 Median 0.76944 0.97324 17.078 3 0 Median NaN NaN NaN 0 0 Median 20753000 9960800 10793000 20753000 9960800 10793000 0 0 0 439 1689 446 1676;1677;1678 2453;2454;2455;2456;2457;2458;2459 2456 7 AGPGDRDPPTRGEESR TASETESEKREEPNRAGPGDRDPPTRGEES GPGDRDPPTRGEESRRRPTGGRGRGPPPAP R A G S R R 1 3 0 2 0 0 2 3 0 0 0 0 0 0 3 1 1 0 0 0 0 0 16 2 1695.7925 P51116 P51116 466 481 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 3 0.0042987 34.954 1 0.93934 1.1367 NaN 1 Median 0.93934 1.1367 NaN 1 0 Median NaN NaN NaN 0 0 Median 7175000 3986200 3188800 7175000 3986200 3188800 0 0 0 440 1360 447 1679 2460 2460 1 AGPGSEELTVTNAR TGTRKGQGGECEIRRAGPGSEELTVTNARY RAGPGSEELTVTNARYVPVSCEKEVDALLH R A G A R Y 2 1 1 0 0 0 2 2 0 0 1 0 0 0 1 1 2 0 0 1 0 0 14 0 1400.6896 A0A024RCS7;Q9BW19;B4DMA8;B4E063 A0A024RCS7 490 503 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 2.6109E-05 127.83 1 2 2.6016 3.3069 NaN 1 Median NaN NaN NaN 0 0 Median 2.6016 3.3069 NaN 1 0 Median 7374300 4201000 3173300 3075400 3075400 0 4298900 1125600 3173300 441 303 448 1680;1681;1682 2461;2462;2463 2461 3 AGPGSLELCGLPSQK SHTTLPQRRRLQKKKAGPGSLELCGLPSQK AGPGSLELCGLPSQKTASLKKRKKMRVMSN K A G Q K T 1 0 0 0 1 1 1 3 0 0 3 1 0 0 2 2 0 0 0 0 0 0 15 0 1512.7606 Q14684 Q14684 575 589 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 8.3904E-07 125.36 3 1 0.85381 1.0852 13.024 3 Median 0.82449 1.0394 6.0957 2 0 Median 0.85398 1.2859 NaN 1 0 Median 47407000 17977000 29430000 39420000 14017000 25403000 7987300 3960400 4026900 442 1493 449 1683;1684;1685;1686 2464;2465;2466;2467;2468;2469 2465 6 AGPGTLSVTIEGPSK GTTGIQSEFFINTTRAGPGTLSVTIEGPSK AGPGTLSVTIEGPSKVKMDCQETPEGYKVM R A G S K V 1 0 0 0 0 0 1 3 0 1 1 1 0 0 2 2 2 0 0 1 0 0 15 0 1412.7511 O75369;A0A024R321;Q68CT4;E7EN95 O75369 2412 2426 FLNB;DKFZp686A1668 Filamin-B yes no 2 1.7115E-05 74.46 1 0.62295 0.79045 NaN 1 Median 0.62295 0.79045 NaN 1 0 Median NaN NaN NaN 0 0 Median 5823300 3666100 2157300 5823300 3666100 2157300 0 0 0 443 1199 450 1687 2470 2470 1 AGPNASIISLK IIRGDDEEWNEVLNKAGPNASIISLKSDKK VLNKAGPNASIISLKSDKKRKLEAKQEPKQ K A G L K S 2 0 1 0 0 0 0 1 0 2 1 1 0 0 1 2 0 0 0 0 0 0 11 0 1069.6132 Q9H0A0 Q9H0A0 979 989 NAT10 N-acetyltransferase 10 yes yes 2 1.1582E-08 132.01 4 2 0.80106 1.073 3.2592 6 Median 0.82778 1.0805 4.1576 4 0 Median 0.679 1.073 0.48125 2 0 Median 797140000 459230000 337910000 476480000 265440000 211040000 320660000 193790000 126870000 444 1730 451 1688;1689;1690;1691;1692;1693 2471;2472;2473;2474;2475;2476;2477;2478 2478 8 AGPVAVQVK QAKPTSSPAKGPPQKAGPVAVQVKAEKPMD KGPPQKAGPVAVQVKAEKPMDNSESSEESS K A G V K A 2 0 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 3 0 0 9 0 867.5178 E7ETY2;B4DRA2;B4DLB1;J3KQ96;Q13428;Q59FZ2 E7ETY2 592 600 TCOF1 Treacle protein no no 2 0.00853 94.006 3 1 0.94111 1.2339 12.088 4 Median 1.056 1.2339 10.135 3 0 Plateau 0.95022 1.418 NaN 1 0 Median 78202000 37659000 40543000 66386000 31668000 34718000 11816000 5990700 5825400 445 1016;1135;1469 452 1694;1695;1696;1697 2479;2480;2481;2482;2483;2484;2485 2479 7 AGQAGLPCDYTANSK EKLPPLVAGKSAKPRAGQAGLPCDYTANSK AGQAGLPCDYTANSKGGVTTQALAKYLKAL R A G S K G 3 0 1 1 1 1 0 2 0 0 1 1 0 0 1 1 1 0 1 0 0 0 15 0 1551.6988 P07199 P07199 252 266 CENPB Major centromere autoantigen B yes yes 2 1.7032E-07 110.98 4 2 0.89402 1.1409 21.97 6 Median 0.94044 1.205 11.276 4 0 Median 0.5811 0.84015 1.748 2 0 Median 55900000 30241000 25659000 43308000 22289000 21019000 12592000 7951900 4640300 446 1239 453 1698;1699;1700;1701;1702;1703 2486;2487;2488;2489;2490;2491;2492;2493;2494 2491 9 AGQEPSPKPGTDVIPAAPR MPLPEPSEQEGESVKAGQEPSPKPGTDVIP PSPKPGTDVIPAAPRKPREFSKLVLLTASD K A G P R K 3 1 0 1 0 1 1 2 0 1 0 1 0 0 5 1 1 0 0 1 0 0 19 1 1886.985 Q4VC44;I3L0R3;I3L231 Q4VC44 16 34 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 3 0.017614 22.653 1 0.50391 0.64923 NaN 1 Median 0.50391 0.64923 NaN 1 0 Median NaN NaN NaN 0 0 Median 5221600 3518800 1702700 5221600 3518800 1702700 0 0 0 447 1536 454 1704 2495;2496 2495 2 AGQPHSSSDAAQAPAEQPHSSSDAAQAPCPR ______________________________ QPHSSSDAAQAPCPRERCLGPPTTPGPYRS R A G P R E 8 1 0 2 1 4 1 1 2 0 0 0 0 0 5 6 0 0 0 0 0 0 31 0 3112.3653 A2IDA3;Q1W6H1;P29372 A2IDA3 11 41 MPG DNA-3-methyladenine glycosylase yes no 3;4 9.4665E-06 67.463 2 1.1994 1.6615 NaN 1 Median 1.1994 1.6615 NaN 1 0 Median NaN NaN NaN 0 0 Median 3033400 1686200 1347100 3033400 1686200 1347100 0 0 0 448 537 455 1705;1706 2497;2498 2497 1 AGQSAAGAAPGGGVDTR ______________________________ QSAAGAAPGGGVDTRDAEMPATEKDLAEDA R A G T R D 5 1 0 1 0 1 0 5 0 0 0 0 0 0 1 1 1 0 0 1 0 0 17 0 1441.691 P21333;Q5HY54 P21333 8 24 FLNA Filamin-A yes no 2 3.782E-25 154.23 4 0.8253 1.1115 38.744 4 Median 0.8253 1.1115 38.744 4 0 Median NaN NaN NaN 0 0 Median 21330000 10545000 10785000 21330000 10545000 10785000 0 0 0 449 1287 456 1707;1708;1709;1710 2499;2500;2501;2502;2503;2504;2505;2506;2507 2507 9 AGQVVTIWAAGAGATHSPPTDLVWK DPLLTYRFPPKFTLKAGQVVTIWAAGAGAT GAGATHSPPTDLVWKAQNTWGCGNSLRTAL K A G W K A 5 0 0 1 0 1 0 3 1 1 1 1 0 0 2 1 3 2 0 3 0 0 25 0 2532.3125 P02545;W8QEH3;Q5TCI8;B4DFR3;A0A0C4DGC5 P02545 491 515 LMNA Prelamin-A/C;Lamin-A/C yes no 3 0.037671 12.346 1 1.2027 1.8221 NaN 1 Median NaN NaN NaN 0 0 Median 1.2027 1.8221 NaN 1 0 Median 14117000 4712700 9404500 0 0 0 14117000 4712700 9404500 450 1229 457 1711 2508 2508 1 AGSATVLSGSIAGLEGGSQLALR QDSQKKIISNLFLGRAGSATVLSGSIAGLE GSIAGLEGGSQLALRRATSMRKTFTTGMAA R A G L R R 4 1 0 0 0 1 1 5 0 1 4 0 0 0 0 4 1 0 0 1 0 0 23 0 2114.1331 A0A0D9SFK2;A0A024QZ63;Q92614;B4DYM1;B4E0T8 A0A0D9SFK2 977 999 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 2 0.0075494 57.936 2 0.41992 0.59497 NaN 1 Median 0.41992 0.59497 NaN 1 0 Median NaN NaN NaN 0 0 Median 3752600 2825500 927110 3752600 2825500 927110 0 0 0 451 6 458 1712;1713 2509;2510 2510 1 AGSLGINLVAANR DETNVRGRLFIISTKAGSLGINLVAANRVI TKAGSLGINLVAANRVIIFDASWNPSYDIQ K A G N R V 3 1 2 0 0 0 0 2 0 1 2 0 0 0 0 1 0 0 0 1 0 0 13 0 1254.7044 A4LAA3;P46100;B4DHH8;B4DLE1 A4LAA3 2119 2131 ATRX Transcriptional regulator ATRX yes no 2 8.2778E-05 79.148 1 2 0.67656 0.93712 35.075 3 Median 0.46087 0.61298 NaN 1 0 Median 0.74873 1.0733 19.194 2 0 Median 42755000 24057000 18698000 17071000 11666000 5404900 25684000 12391000 13293000 452 556 459 1714;1715;1716 2511;2512;2513;2514;2515;2516 2511 6 AGSQLGPGYQHHAQPK WTDVETRCSVAVEMRAGSQLGPGYQHHAQP GSQLGPGYQHHAQPKRKKP___________ R A G P K R 2 0 0 0 0 3 0 3 2 0 1 1 0 0 2 1 0 0 1 0 0 0 16 0 1674.8227 H7BYN4;Q02241 H7BYN4 933 948 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2;3 3.0613E-10 125.28 5 2 1.021 1.2888 19.654 6 Median 1.1236 1.4053 9.2006 4 0 Median 0.76433 1.0138 19.981 2 0 Median 30430000 14806000 15624000 26153000 12462000 13691000 4277500 2344200 1933300 453 1117 460 1717;1718;1719;1720;1721;1722;1723 2517;2518;2519;2520;2521;2522;2523;2524;2525;2526 2520 10 AGTDPSHMPTGPQAASCLDLNLVTR NTAEGCVHETQEKQKAGTDPSHMPTGPQAA GPQAASCLDLNLVTRVYSTALSSFLTKRNS K A G T R V 3 1 1 2 1 1 0 2 1 0 3 0 1 0 3 2 3 0 0 1 0 0 25 0 2608.2374 Q9BQG0;I3L1L3 Q9BQG0 952 976 MYBBP1A Myb-binding protein 1A yes no 3 0.0034333 57.768 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2470500 2470500 0 2470500 2470500 0 0 0 0 454 1708 461;462 1724;1725 2527;2528 2528 772 2 AGTDSPVSCASVTEER IPKAKNKSESENEPKAGTDSPVSCASVTEE GTDSPVSCASVTEERVASDSPKPALTLQQG K A G E R V 2 1 0 1 1 0 2 1 0 0 0 0 0 0 1 3 2 0 0 2 0 0 16 0 1664.7312 E9PEI0;Q69YH5 E9PEI0 691 706 CDCA2 Cell division cycle-associated protein 2 yes no 2 3.1655E-23 158.25 4 2 0.44244 0.61765 36.249 3 Median 0.86227 1.156 NaN 1 0 Median 0.43863 0.617 0.14833 2 0 Median 22611000 15758000 6853000 10305000 7576200 2728400 12307000 8182100 4124500 455 1023 463 1726;1727;1728;1729;1730;1731 2529;2530;2531;2532;2533;2534;2535 2530 7 AGTFQAFEQFGQQLLAHGHYASPEIK LLERHQEHRTEIDARAGTFQAFEQFGQQLL QQLLAHGHYASPEIKQKLDILDQERADLEK R A G I K Q 4 0 0 0 0 4 2 3 2 1 2 1 0 3 1 1 1 0 1 0 0 0 26 0 2874.4089 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16 Q13813 1392 1417 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 3;4 1.9197E-46 127.3 4 0.72784 0.92483 5.3532 4 Median 0.72784 0.92483 5.3532 4 0 Median NaN NaN NaN 0 0 Median 110640000 64200000 46439000 110640000 64200000 46439000 0 0 0 456 1476 464 1732;1733;1734;1735 2536;2537;2538;2539;2540;2541;2542 2540 7 AGTGVDNVDLEAATR ADVINAAEKLQVVGRAGTGVDNVDLEAATR AGTGVDNVDLEAATRKGILVMNTPNGNSLS R A G T R K 3 1 1 2 0 0 1 2 0 0 1 0 0 0 0 0 2 0 0 2 0 0 15 0 1487.7216 O43175;V9HW79;Q5SZU1;B3KSC3 O43175 76 90 PHGDH;HEL-S-113 D-3-phosphoglycerate dehydrogenase yes no 2 3.6719E-10 145.31 4 1 0.64321 0.86074 1.8196 4 Median 0.64321 0.86074 1.8196 4 0 Median NaN NaN NaN 0 0 Median 93586000 40136000 53450000 71466000 40136000 31330000 22119000 0 22119000 457 1182 465 1736;1737;1738;1739;1740 2543;2544;2545;2546;2547;2548;2549;2550;2551;2552;2553 2547 11 AGTGVDNVDLEAATRK ADVINAAEKLQVVGRAGTGVDNVDLEAATR GTGVDNVDLEAATRKGILVMNTPNGNSLSA R A G R K G 3 1 1 2 0 0 1 2 0 0 1 1 0 0 0 0 2 0 0 2 0 0 16 1 1615.8166 O43175;V9HW79;Q5SZU1;B3KSC3 O43175 76 91 PHGDH;HEL-S-113 D-3-phosphoglycerate dehydrogenase yes no 2;3 1.7545E-10 94.544 3 1 0.72592 0.959 106.66 4 Median 0.71901 0.94023 11.479 3 0 Median 5.1694 7.5221 NaN 1 0 Median 73366000 40461000 32904000 69958000 40024000 29934000 3407700 437020 2970700 458 1182 466 1741;1742;1743;1744 2554;2555;2556;2557;2558 2555 5 AGTLLPVIQFLQK THKLLMLHGQKLKSRAGTLLPVIQFLQKSI SRAGTLLPVIQFLQKSIQRHLDDLSKLCSW R A G Q K S 1 0 0 0 0 2 0 1 0 1 3 1 0 1 1 0 1 0 0 1 0 0 13 0 1426.8548 Q15269;A0A0B4J2E5;A0A096LPI6 Q15269 838 850 PWP2 Periodic tryptophan protein 2 homolog yes no 2 8.7901E-10 123.63 4 0.91594 1.189 2.4601 4 Median 0.91594 1.189 2.4601 4 0 Median NaN NaN NaN 0 0 Median 341150000 176340000 164810000 341150000 176340000 164810000 0 0 0 459 1508 467 1745;1746;1747;1748 2559;2560;2561;2562;2563;2564;2565;2566 2563 8 AGTQIENIDEDFRDGLK QRKTFTAWCNSHLRKAGTQIENIDEDFRDG TQIENIDEDFRDGLKLMLLLEVISGERLPK K A G L K L 1 1 1 3 0 1 2 2 0 2 1 1 0 1 0 0 1 0 0 0 0 0 17 1 1919.9225 A0A0S2Z3G9;O43707;F5GXS2;B4E337;A0A0S2Z3C0;B4DSX0;K7EP19;B3W6H4 A0A0S2Z3G9 67 83 ACTN4;MLL-ACTN4 Alpha-actinin-4 yes no 3 3.4968E-06 103.39 3 0.71157 0.93469 3.7786 3 Median 0.71157 0.93469 3.7786 3 0 Median NaN NaN NaN 0 0 Median 63647000 34462000 29184000 63647000 34462000 29184000 0 0 0 460 451 468 1749;1750;1751 2567;2568;2569;2570;2571;2572 2570 6 AGTYFSNQAVR FFTGVVDFMHLDPKKAGTYFSNQAVRACIL DPKKAGTYFSNQAVRACILCVHPRTRVVHL K A G V R A 2 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 1 0 1 1 0 0 11 0 1212.5887 Q14690;B4DH82;B4DES7 Q14690 318 328 PDCD11 Protein RRP5 homolog yes no 2 0.00054493 120.31 3 2 0.73301 1.0467 11.095 4 Median 0.85117 1.1522 13.841 2 0 Median 0.682 1.0162 4.4478 2 0 Median 72157000 36617000 35541000 41668000 18378000 23290000 30490000 18239000 12251000 461 1494 469 1752;1753;1754;1755;1756 2573;2574;2575;2576;2577;2578;2579;2580 2575 8 AGVAAPATQVAQVTLQSVQR ERLVAIRTEYNLRLKAGVAAPATQVAQVTL PATQVAQVTLQSVQRRPELEDSTLRYLQDL K A G Q R R 5 1 0 0 0 4 0 1 0 0 1 0 0 0 1 1 2 0 0 4 0 0 20 0 1994.0909 Q15149;E9PMV1 Q15149 631 650 PLEC Plectin yes no 2 1.6845E-40 186.29 4 0.94173 1.2689 5.791 4 Median 0.94173 1.2689 5.791 4 0 Median NaN NaN NaN 0 0 Median 69494000 34782000 34712000 69494000 34782000 34712000 0 0 0 462 1507 470 1757;1758;1759;1760 2581;2582;2583;2584;2585;2586;2587;2588;2589 2584 9 AGVAPLQVK VRANLPQSFQVDTSKAGVAPLQVKVQGPKG QVDTSKAGVAPLQVKVQGPKGLVEPVDVVD K A G V K V 2 0 0 0 0 1 0 1 0 0 1 1 0 0 1 0 0 0 0 2 0 0 9 0 881.53345 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1478 1486 FLNA;FLJ00119 Filamin-A yes no 2 0.0037197 89.369 4 0.92535 1.1516 11.947 2 Median 0.92535 1.1516 11.947 2 0 Median NaN NaN NaN 0 0 Median 82108000 27681000 54428000 82108000 27681000 54428000 0 0 0 463 1287 471 1761;1762;1763;1764 2590;2591;2592;2593 2592 4 AGVIFPVGR RGGKKKSTKTSRSAKAGVIFPVGRMLRYIK TSRSAKAGVIFPVGRMLRYIKKGHPKYRIG K A G G R M 1 1 0 0 0 0 0 2 0 1 0 0 0 1 1 0 0 0 0 2 0 0 9 0 914.53379 O75367;B4DJC3;D6RCF2;Q5SQT3 O75367 19 27 H2AFY;H2AFY2 Core histone macro-H2A.1;Histone H2A no no 2 0.0020732 87.284 4 1 0.7762 1.0954 6.9714 4 Median 0.78652 1.08 2.3554 3 0 Median 0.7363 1.2389 NaN 1 0 Median 2662600000 1513000000 1149500000 2278200000 1297000000 981220000 384360000 216050000 168310000 464 1198 472 1765;1766;1767;1768;1769 2594;2595;2596;2597;2598;2599;2600;2601;2602;2603 2601 10 AGVLAHLEEER DSNLYRIGQSKVFFRAGVLAHLEEERDLKI VFFRAGVLAHLEEERDLKITDVIIGFQACC R A G E R D 2 1 0 0 0 0 3 1 1 0 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1222.6306 A0A024R1N1;P35579;Q86XU5;B4E3S1;A0A0U4BW16;P35580 A0A024R1N1 765 775 MYH9;MYH10 Myosin-9;Myosin-10 no no 2;3 2.6131E-05 112.15 7 0.71145 0.95562 24.225 6 Median 0.71145 0.95562 24.225 6 0 Median NaN NaN NaN 0 0 Median 109640000 58198000 51438000 109640000 58198000 51438000 0 0 0 465 61;490;1320 473 1770;1771;1772;1773;1774;1775;1776 2604;2605;2606;2607;2608;2609;2610;2611;2612;2613 2611 10 AGVLAHLEEERDLK DSNLYRIGQSKVFFRAGVLAHLEEERDLKI RAGVLAHLEEERDLKITDVIIGFQACCRGY R A G L K I 2 1 0 1 0 0 3 1 1 0 3 1 0 0 0 0 0 0 0 1 0 0 14 1 1578.8366 A0A024R1N1;P35579;Q86XU5;B4E3S1;A0A0U4BW16;P35580 A0A024R1N1 765 778 MYH9;MYH10 Myosin-9;Myosin-10 no no 3;4 2.9772E-07 132.79 5 0.87194 1.171 5.4242 3 Median 0.87194 1.171 5.4242 3 0 Median NaN NaN NaN 0 0 Median 153740000 103070000 50675000 153740000 103070000 50675000 0 0 0 466 61;490;1320 474 1777;1778;1779;1780;1781 2614;2615;2616;2617;2618;2619 2614 6 AGVMALANLLQIQR AEPLINLDVNNPDFKAGVMALANLLQIQRH KAGVMALANLLQIQRHDDYLVMLKAIRILV K A G Q R H 3 1 1 0 0 2 0 1 0 1 3 0 1 0 0 0 0 0 0 1 0 0 14 0 1496.8497 Q5RLJ0;Q549M8;Q9Y224;G3V4C6;H0YJB9 Q5RLJ0 132 145 C14orf166 UPF0568 protein C14orf166 yes no 2 5.2525E-14 154.56 7 1 0.6417 0.89464 17.93 5 Median 0.64612 0.90316 17.204 4 0 Median 0.55856 0.75229 NaN 1 0 Median 17324000 10448000 6875400 11754000 6764400 4989700 5569300 3683600 1885700 467 1544 475;476 1782;1783;1784;1785;1786;1787;1788;1789 2620;2621;2622;2623;2624;2625;2626;2627;2628;2629 2621 708 8 AGVNTVTTLVENK AGKGDVPTKRPPVLRAGVNTVTTLVENKKA LRAGVNTVTTLVENKKAQLVVIAHDVDPIE R A G N K K 1 0 2 0 0 0 1 1 0 0 1 1 0 0 0 0 3 0 0 3 0 0 13 0 1344.7249 P62424;Q5T8U3;Q9BY74;Q5T8U2 P62424 138 150 RPL7A;RP-L7a 60S ribosomal protein L7a yes no 2 7.8438E-111 263.3 7 2 0.69003 0.91577 7.0314 6 Median 0.72635 0.96493 4.9657 4 0 Median 0.53528 0.8503 3.2092 2 0 Median 1744700000 1011500000 733190000 1574500000 904640000 669860000 170230000 106890000 63331000 468 1411 477 1790;1791;1792;1793;1794;1795;1796;1797;1798 2630;2631;2632;2633;2634;2635;2636;2637;2638;2639;2640;2641;2642 2639 13 AGVNTVTTLVENKK AGKGDVPTKRPPVLRAGVNTVTTLVENKKA RAGVNTVTTLVENKKAQLVVIAHDVDPIEL R A G K K A 1 0 2 0 0 0 1 1 0 0 1 2 0 0 0 0 3 0 0 3 0 0 14 1 1472.8199 P62424;Q5T8U3;Q9BY74;Q5T8U2 P62424 138 151 RPL7A;RP-L7a 60S ribosomal protein L7a yes no 2;3 2.0986E-10 177.57 7 4 0.70029 0.84771 9.0005 11 Median 0.71682 0.87454 5.0766 7 0 Median 0.47573 0.77001 4.5685 4 0 Median 1483800000 881180000 602600000 1304300000 760930000 543330000 179520000 120250000 59268000 469 1411 478 1799;1800;1801;1802;1803;1804;1805;1806;1807;1808;1809 2643;2644;2645;2646;2647;2648;2649;2650;2651;2652;2653;2654;2655;2656;2657;2658;2659;2660;2661;2662 2647 20 AGVPGVAAPGAPAAAPPAK VTAGKLARAPADPGKAGVPGVAAPGAPAAA GVAAPGAPAAAPPAKEIPEVLVDPRSRRRY K A G A K E 8 0 0 0 0 0 0 3 0 0 0 1 0 0 5 0 0 0 0 2 0 0 19 0 1568.8675 B2R841;P53350;Q58A51;I3L387 B2R841 20 38 PLK1;Plk-1 delta Serine/threonine-protein kinase PLK;Serine/threonine-protein kinase PLK1 yes no 2 2.2983E-06 93.839 4 2 0.82311 1.0299 20.421 6 Median 0.78769 0.96636 7.2765 4 0 Median 0.9021 1.4154 0.25077 2 0 Median 131580000 69394000 62188000 70924000 38251000 32673000 60658000 31142000 29515000 470 714 479 1810;1811;1812;1813;1814;1815 2663;2664;2665;2666;2667;2668;2669;2670;2671;2672;2673;2674;2675 2669 13 AGVQSGTNALLVVK NELETRVRLSKRRAKAGVQSGTNALLVVKH KAGVQSGTNALLVVKHRDMNEKELEAQEAR K A G V K H 2 0 1 0 0 1 0 2 0 0 2 1 0 0 0 1 1 0 0 3 0 0 14 0 1355.7773 A0A024R0H6;Q8N7H5 A0A024R0H6 339 352 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 2.4224E-14 160.77 4 2 0.81641 1.001 87.062 5 Median 0.81641 1.001 5.281 3 0 Plateau 3.1346 4.7398 8.0062 2 0 Median 112260000 60277000 51981000 81490000 52650000 28841000 30767000 7626800 23140000 471 36 480 1816;1817;1818;1819;1820;1821 2676;2677;2678;2679;2680;2681;2682;2683;2684;2685 2678 10 AGVSFSGHR ______________________________ ______________________________ M A G H R L 1 1 0 0 0 0 0 2 1 0 0 0 0 1 0 2 0 0 0 1 0 0 9 0 916.45151 Q16643;D6R9W4;D6RFI1 Q16643 2 10 DBN1 Drebrin yes no 2 0.014572 54.776 2 0.67615 0.90436 4.2067 2 Median 0.67615 0.90436 4.2067 2 0 Median NaN NaN NaN 0 0 Median 29782000 16720000 13062000 29782000 16720000 13062000 0 0 0 472 1523 481 1822;1823 2686;2687 2686 2 AGVVANDAGDRVTPAVVAYSENEEIVGLAAK LGCTSACVAVYKDGRAGVVANDAGDRVTPA VAYSENEEIVGLAAKQSRIRNISNTVMKVK R A G A K Q 7 1 2 2 0 0 3 3 0 1 1 1 0 0 1 1 1 0 1 6 0 0 31 1 3084.5728 Q0VDF9;B4DYI5;Q6P155;H7C2A1;B0YIZ1 Q0VDF9 23 53 HSPA14 Heat shock 70 kDa protein 14 yes no 3 0.0029559 27.337 1 0.33147 0.42763 NaN 1 Median 0.33147 0.42763 NaN 1 0 Median NaN NaN NaN 0 0 Median 4591400 3003400 1588000 4591400 3003400 1588000 0 0 0 473 1455 482 1824 2688 2688 1 AGVVGPELHEQLLSAEK DPVRNQRLYVHEAVKAGVVGPELHEQLLSA VVGPELHEQLLSAEKAVTGYRDPYSGSTIS K A G E K A 2 0 0 0 0 1 3 2 1 0 3 1 0 0 1 1 0 0 0 2 0 0 17 0 1775.9418 Q15149;D3DWL0 Q15149 3552 3568 PLEC;PLEC1 Plectin yes no 2;3 5.0502E-06 86.411 6 2 0.71489 0.90939 65.425 7 Median 0.68973 0.88533 36.149 5 0 Median 2.2569 3.3893 3.2114 2 0 Median 260360000 150510000 109850000 237790000 144760000 93030000 22567000 5747600 16820000 474 1507 483 1825;1826;1827;1828;1829;1830;1831;1832 2689;2690;2691;2692;2693;2694;2695;2696;2697;2698;2699;2700;2701 2696 13 AGYKPVAIQTYPILGEK ______________________________ YKPVAIQTYPILGEKITQDTLYWNNYKTPV M A G E K I 2 0 0 0 0 1 1 2 0 2 1 2 0 0 2 0 1 0 2 1 0 0 17 1 1847.0193 Q8TED0;D6RF65 Q8TED0 2 18 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 2.9509E-18 157.23 4 0.96617 1.1875 6.4808 4 Median 0.96617 1.1875 6.4808 4 0 Median NaN NaN NaN 0 0 Median 121100000 63951000 57154000 121100000 63951000 57154000 0 0 0 475 1660 484 1833;1834;1835;1836 2702;2703;2704;2705;2706;2707;2708 2702 7 AGYPQYVSEILEK LMDRDLLQIIFSFSKAGYPQYVSEILEKVT SKAGYPQYVSEILEKVTCERRYIPDAMNLI K A G E K V 1 0 0 0 0 1 2 1 0 1 1 1 0 0 1 1 0 0 2 1 0 0 13 0 1495.7559 E5KNY5;P42704;B4DSR0;B8ZZ38;A0A0C4DG06;C9JCA9 E5KNY5 315 327 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.00043594 79.693 5 0.29273 0.3754 11.422 2 Median 0.29273 0.3754 11.422 2 0 Median NaN NaN NaN 0 0 Median 26862000 21097000 5764300 26862000 21097000 5764300 0 0 0 476 1001 485 1837;1838;1839;1840;1841 2709;2710;2711;2712;2713;2714 2712 6 AGYSTDESSSSSLHATR FRPPGSGRGSGGSDKAGYSTDESSSSSLHA YSTDESSSSSLHATRTYGGSYGGRGRGRRT K A G T R T 2 1 0 1 0 0 1 1 1 0 1 0 0 0 0 6 2 0 1 0 0 0 17 0 1754.7707 P51116 P51116 407 423 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 2;3 8.9277E-17 134.68 6 4 0.77438 1.0896 13.304 6 Median 0.89487 1.2279 12.085 2 0 Median 0.75488 1.0916 8.7779 4 0 Linear 39202000 19407000 19795000 12962000 5666200 7295800 26240000 13741000 12499000 477 1360 486 1842;1843;1844;1845;1846;1847;1848;1849;1850;1851 2715;2716;2717;2718;2719;2720;2721;2722;2723;2724;2725;2726;2727;2728 2716 14 AHAAIRENPVYEK KNSVTPDMMEEMYKKAHAAIRENPVYEKKP KKAHAAIRENPVYEKKPKKEVKKKRWNRPK K A H E K K 3 1 1 0 0 0 2 0 1 1 0 1 0 0 1 0 0 0 1 1 0 0 13 1 1496.7736 A2RUM7;P46777;B3KTM6;Q59GX9;Q8WYP1 A2RUM7 243 255 RPL5 60S ribosomal protein L5 yes no 3 0.0047538 56.551 2 0.63189 0.83196 20.121 2 Median 0.63189 0.83196 20.121 2 0 Median NaN NaN NaN 0 0 Median 12868000 7287100 5580500 12868000 7287100 5580500 0 0 0 478 540 487 1852;1853 2729;2730 2730 2 AHAFAVQQK LAQEAAQKRLQAEEKAHAFAVQQKEQELQQ LQAEEKAHAFAVQQKEQELQQTLQQEQSVL K A H Q K E 3 0 0 0 0 2 0 0 1 0 0 1 0 1 0 0 0 0 0 1 0 0 9 0 998.52976 Q15149 Q15149 2190 2198 PLEC Plectin yes yes 2 7.6031E-05 103.29 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1547900 0 1547900 1547900 0 1547900 0 0 0 479 1507 488 1854 2731 2731 1 AHAIITLGK PPPQVRGSVMPSVIRAHAIITLGKLCLQHE MPSVIRAHAIITLGKLCLQHEDLAKKSIPA R A H G K L 2 0 0 0 0 0 0 1 1 2 1 1 0 0 0 0 1 0 0 0 0 0 9 0 922.56 P42695;G3V1A9 P42695 921 929 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.0018021 103.83 4 2 0.66494 0.83375 17.731 6 Median 0.71952 0.89423 9.3727 4 0 Median 0.43456 0.65665 0.8901 2 0 Median 114120000 69024000 45099000 81846000 47016000 34830000 32277000 22007000 10269000 480 1338 489 1855;1856;1857;1858;1859;1860 2732;2733;2734;2735;2736;2737;2738;2739;2740;2741 2735 10 AHAYGDPNAGLNSQLHYK PNSETLASAYHANTRAHAYGDPNAGLNSQL YGDPNAGLNSQLHYKRQMYQQQPEEYKDWS R A H Y K R 3 0 2 1 0 1 0 2 2 0 2 1 0 0 1 1 0 0 2 0 0 0 18 0 1954.9286 W5ZR30;Q9UGU0 W5ZR30 1069 1086 TCF20 Transcription factor 20 yes no 3 1.0289E-06 65.107 1 0.86065 1.0696 NaN 1 Median 0.86065 1.0696 NaN 1 0 Median NaN NaN NaN 0 0 Median 8361000 3868000 4493000 8361000 3868000 4493000 0 0 0 481 1783 490 1861 2742;2743 2742 2 AHEEQDEESQDNLFSSDR NSFLKIYNGLFAISKAHEEQDEESQDNLFS EQDEESQDNLFSSDRAIQSLTIQTACAFEQ K A H D R A 1 1 1 3 0 2 4 0 1 0 1 0 0 1 0 3 0 0 0 0 0 0 18 0 2134.8675 Q15058 Q15058 1284 1301 KIF14 Kinesin-like protein KIF14 yes yes 2;3 0.00058296 106.13 4 0.66735 0.92155 NaN 1 Median 0.66735 0.92155 NaN 1 0 Median NaN NaN NaN 0 0 Median 14558000 9656800 4900900 14558000 9656800 4900900 0 0 0 482 1504 491 1862;1863;1864;1865 2744;2745;2746;2747 2745 4 AHEPTYFTVDCAEAGQGDVSIGIK KVKVYGPGVAKTGLKAHEPTYFTVDCAEAG DCAEAGQGDVSIGIKCAPGVVGPAEADIDF K A H I K C 3 0 0 2 1 1 2 3 1 2 0 1 0 1 1 1 2 0 1 2 0 0 24 0 2564.1853 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 786 809 FLNA Filamin-A yes no 3 3.3449E-16 117.35 5 0.87409 1.0863 7.1003 4 Median 0.87409 1.0863 7.1003 4 0 Median NaN NaN NaN 0 0 Median 135930000 70148000 65784000 135930000 70148000 65784000 0 0 0 483 1287 492 1866;1867;1868;1869;1870 2748;2749;2750;2751;2752;2753;2754;2755;2756 2750 9 AHEVGAQGGPPVAQVEQDLPISR DAGAEWAAAVLKQERAHEVGAQGGPPVAQV GPPVAQVEQDLPISRENLTDLVVDTDTLGE R A H S R E 3 1 0 1 0 3 2 3 1 1 1 0 0 0 3 1 0 0 0 3 0 0 23 0 2354.1979 Q14676;B4DYH4 Q14676 620 642 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 3 0.00022181 46.065 2 1 0.69762 0.97823 2.3823 2 Median 0.71187 0.96189 NaN 1 0 Median 0.68366 0.99484 NaN 1 0 Median 15573000 10565000 5007300 7250700 5795200 1455500 8322000 4770200 3551800 484 1491 493 1871;1872;1873 2757;2758;2759 2758 3 AHGLLAEENR AEKASYAEQLSMLKKAHGLLAEENRGLGER SMLKKAHGLLAEENRGLGERANLGRQFLEV K A H N R G 2 1 1 0 0 0 2 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1108.5625 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q7Z757;Q96HN5;H0YFY6;K4DIE0;Q4LE64;Q14980 Q4LE64 1443 1452 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2;3 1.6521E-05 124.23 4 2 0.49073 0.6717 39.761 5 Median 0.79763 1.0737 25.055 3 0 Plateau 0.29874 0.45945 2.8785 2 0 Median 84137000 49796000 34341000 43064000 19492000 23572000 41073000 30304000 10769000 485 148;1499 494 1874;1875;1876;1877;1878;1879 2760;2761;2762;2763;2764;2765;2766;2767 2764 8 AHIANPSGASTECFVTDNADGTYQVEYTPFEK VDSRPLTQVGGDHIKAHIANPSGASTECFV NADGTYQVEYTPFEKGLHVVEVTYDDVPIP K A H E K G 4 0 2 2 1 1 3 2 1 1 0 1 0 2 2 2 4 0 2 2 0 0 32 0 3518.5572 O75369;A0A024R321;Q68CT4;E7EN95 O75369 1268 1299 FLNB;DKFZp686A1668 Filamin-B yes no 3 6.4924E-28 122.57 4 0.88159 1.1595 15.224 3 Median 0.88159 1.1595 15.224 3 0 Median NaN NaN NaN 0 0 Median 14776000 7937700 6838100 14776000 7937700 6838100 0 0 0 486 1199 495 1880;1881;1882;1883 2768;2769;2770;2771;2772;2773;2774;2775;2776 2773 9 AHILACAPSNSGADLLCQR TLVEAIKQVVKHLPKAHILACAPSNSGADL ACAPSNSGADLLCQRLRVHLPSSIYRLLAP K A H Q R L 4 1 1 1 2 1 0 1 1 1 3 0 0 0 1 2 0 0 0 0 0 0 19 0 2052.9833 B7Z700;Q5JR04;Q9HCE1 B7Z700 486 504 MOV10 Putative helicase MOV-10 yes no 3 7.4412E-06 108.96 2 0.6811 0.94284 NaN 1 Median 0.6811 0.94284 NaN 1 0 Median NaN NaN NaN 0 0 Median 11403000 7243100 4160100 11403000 7243100 4160100 0 0 0 487 916 496 1884;1885 2777;2778 2777 2 AHINLVR NDLQPLLAWLKVMEKAHINLVRLQWDLGLG AWLKVMEKAHINLVRLQWDLGLGHLPRFFG K A H V R L 1 1 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 7 0 821.48717 B3KMR5;Q5JTH9;B3KY97 B3KMR5 397 403 RRP12 RRP12-like protein yes no 2 0.0081448 132.8 3 2 0.83032 1.1401 6.2435 4 Median 0.89969 1.2169 4.8773 2 0 Median 0.78097 1.1049 0.083354 2 0 Median 87565000 46356000 41208000 69818000 36742000 33076000 17746000 9614000 8132100 488 756 497 1886;1887;1888;1889;1890 2779;2780;2781;2782;2783 2780 5 AHLALEEDLNSEFR RQLKAFKSVLADIKKAHLALEEDLNSEFRA KAHLALEEDLNSEFRAMDAVNKEKNTKEHK K A H F R A 2 1 1 1 0 0 3 0 1 0 3 0 0 1 0 1 0 0 0 0 0 0 14 0 1642.7951 A4LAA3;P46100;A0A096LNL9;A0A096LNW1;A0A096LNN3 A4LAA3 405 418 ATRX Transcriptional regulator ATRX yes no 3 8.3652E-09 139.48 4 1 0.6287 0.85164 12.761 5 Median 0.60246 0.80928 8.7303 4 0 Median 0.6672 1.0035 NaN 1 0 Median 102520000 62234000 40284000 86392000 53624000 32768000 16127000 8610400 7516400 489 556 498 1891;1892;1893;1894;1895 2784;2785;2786;2787;2788;2789;2790;2791;2792 2787 8 AHLFDLNCK DVFSSMLKDTTSQHRAHLFDLNCKICTGQV TTSQHRAHLFDLNCKICTGQVPSAEDEPAP R A H C K I 1 0 1 1 1 0 0 0 1 0 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1116.5386 Q9BTC0 Q9BTC0 846 854 DIDO1 Death-inducer obliterator 1 yes yes 2 0.001668 94.114 3 1 0.71776 1.0189 14.248 3 Median 0.7208 0.91082 15.863 2 0 Median 0.71776 1.0605 NaN 1 0 Median 28863000 17180000 11682000 22248000 13715000 8532700 6614900 3465200 3149700 490 1713 499 1896;1897;1898;1899 2793;2794;2795;2796 2794 4 AHLGSCTLGNFVAGK NQGCEAVYSSVSGLKAHLGSCTLGNFVAGK AHLGSCTLGNFVAGKYKCLLCQKEFVSESG K A H G K Y 2 0 1 0 1 0 0 3 1 0 2 1 0 1 0 1 1 0 0 1 0 0 15 0 1530.7613 B4DES6;B7Z9P6;G3XAG1;Q96ME7;Q658M0;B4E0X7 B4DES6 320 334 ZNF512;DKFZp666L156 Zinc finger protein 512 yes no 3 6.6127E-06 86.738 3 0.67986 0.84114 3.1678 3 Median 0.67986 0.84114 3.1678 3 0 Median NaN NaN NaN 0 0 Median 40233000 23563000 16670000 40233000 23563000 16670000 0 0 0 491 799 500 1900;1901;1902 2797;2798;2799 2799 3 AHLGTALK SHRRDQKWHDKQYKKAHLGTALKANPFGGA HDKQYKKAHLGTALKANPFGGASHAKGIVL K A H L K A 2 0 0 0 0 0 0 1 1 0 2 1 0 0 0 0 1 0 0 0 0 0 8 0 809.47594 A8K517;P62266;D6RD47;D6RDJ2;D6RIX0;D6R9I7 A8K517 30 37 RPS23 40S ribosomal protein S23 yes no 1;2 3.9784E-11 168.45 6 1 0.97395 1.2429 10.832 7 Median 0.98715 1.2523 10.331 6 0 Median 0.6867 1.0981 NaN 1 0 Median 5666300000 2776400000 2889900000 5152900000 2489400000 2663500000 513440000 287020000 226420000 492 611 501 1903;1904;1905;1906;1907;1908;1909 2800;2801;2802;2803;2804;2805;2806;2807;2808 2802 8 AHLMEIQVNGGTVAEK IAHTQMRLLPLRQKKAHLMEIQVNGGTVAE HLMEIQVNGGTVAEKLDWARERLEQQVPVN K A H E K L 2 0 1 0 0 1 2 2 1 1 1 1 1 0 0 0 1 0 0 2 0 0 16 0 1695.8614 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;B3KS36;Q49AJ9;Q9BT63;H7C422;H7C3M2;B5MCW2 P39023 178 193 RPL3;rpl3 60S ribosomal protein L3 yes no 2;3 8.6022E-43 187.74 10 4 0.67201 0.90967 11.547 11 Median 0.75129 0.91153 13.69 7 0 Median 0.57567 0.89943 4.3318 4 0 Median 199030000 123600000 75432000 90684000 51238000 39446000 108350000 72365000 35985000 493 1330 502;503 1910;1911;1912;1913;1914;1915;1916;1917;1918;1919;1920;1921;1922;1923 2809;2810;2811;2812;2813;2814;2815;2816;2817;2818;2819;2820;2821;2822;2823;2824;2825;2826;2827 2812 555 19 AHNAASEPAGGVAER VLHKGKGRGGPARGRAHNAASEPAGGVAER AHNAASEPAGGVAERHEGGRDPPASHAVPN R A H E R H 5 1 1 0 0 0 2 2 1 0 0 0 0 0 1 1 0 0 0 1 0 0 15 0 1435.6804 H7C0J3 H7C0J3 203 217 CHD3 yes yes 2;3 0.00023865 105.03 2 0.90919 1.1925 NaN 1 Median NaN NaN NaN 0 0 Median 0.90919 1.1925 NaN 1 0 Median 3694700 2550600 1144100 0 0 0 3694700 2550600 1144100 494 1121 504 1924;1925 2828;2829 2829 2 AHQANQLYPFAISLIESVR LKWLGFRVPLAIVNKAHQANQLYPFAISLI NQLYPFAISLIESVRTYERTCEKVEERNTI K A H V R T 3 1 1 0 0 2 1 0 1 2 2 0 0 1 1 2 0 0 1 1 0 0 19 0 2156.1378 Q14204 Q14204 768 786 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 3.0946E-05 80.596 4 0.74857 1.0589 29.092 3 Median 0.74857 1.0589 29.092 3 0 Median NaN NaN NaN 0 0 Median 11455000 7169800 4284700 11455000 7169800 4284700 0 0 0 495 1483 505 1926;1927;1928;1929 2830;2831;2832;2833;2834;2835 2832 6 AHQILVLQEGK ______________________________ AVQRAHQILVLQEGKLQKLAQLQEGQDLYS R A H G K L 1 0 0 0 0 2 1 1 1 1 2 1 0 0 0 0 0 0 0 1 0 0 11 0 1234.7034 Q96P38;Q9UMW6;Q9UQ60;Q5JNW1;A0A0G2JLV0;A0A087WYD6;X5CMH5;Q59H06;Q03519 Q96P38 15 25 TAP2;TAP2-G Antigen peptide transporter 2 yes no 2 0.0030447 89.029 3 0.97506 1.2514 0.49151 2 Median 0.97506 1.2514 0.49151 2 0 Median NaN NaN NaN 0 0 Median 13293000 7845600 5447400 13293000 7845600 5447400 0 0 0 496 363 506 1930;1931;1932 2836;2837;2838 2837 3 AHQNTLEVYPPFLFFLAVGGVYHPR STDPENGHIFNCIQRAHQNTLEVYPPFLFF PFLFFLAVGGVYHPRIASGLGLAWIVGRVL R A H P R I 2 1 1 0 0 1 1 2 2 0 3 0 0 3 3 0 1 0 2 3 0 0 25 0 2871.4861 Q53GB9;A0A024R8Z1;Q5VV89;O14880;Q5VV87 Q53GB9 60 84 MGST3 Microsomal glutathione S-transferase 3 yes no 4 2.9289E-15 105.38 2 0.66941 0.91689 NaN 1 Median 0.66941 0.91689 NaN 1 0 Median NaN NaN NaN 0 0 Median 78547000 49925000 28622000 78547000 49925000 28622000 0 0 0 497 208 507 1933;1934 2839;2840 2840 1 AHQVVEDGYEFFAK VAKFLHKHDLDLICRAHQVVEDGYEFFAKR RAHQVVEDGYEFFAKRQLVTLFSAPNYCGE R A H A K R 2 0 0 1 0 1 2 1 1 0 0 1 0 2 0 0 0 0 1 2 0 0 14 0 1638.7678 A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;B4DNE3;C4TNW6;P62136;A0A140VJS9;B3KXM2;E9PMD7;V9HW04;P62140;B4DJ75;B7ZB67 V9HW04 247 260 PPP1CC;PPP1CA;HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 2;3 4.5435E-45 184.34 10 4 0.91895 1.2503 6.1865 11 Median 0.95257 1.2503 6.7119 7 0 Median 0.78577 1.2548 5.8204 4 0 Median 988420000 508060000 480360000 736500000 368340000 368160000 251920000 139720000 112200000 498 1396;1397;279 508 1935;1936;1937;1938;1939;1940;1941;1942;1943;1944;1945;1946;1947;1948 2841;2842;2843;2844;2845;2846;2847;2848;2849;2850;2851;2852;2853;2854;2855;2856;2857;2858;2859;2860;2861;2862;2863;2864;2865;2866 2853 26 AHSIQIMK VTQCYRDMGARHRARAHSIQIMKVEEIAAS GARHRARAHSIQIMKVEEIAASKCRRPAVK R A H M K V 1 0 0 0 0 1 0 0 1 2 0 1 1 0 0 1 0 0 0 0 0 0 8 0 926.50077 Q02543;M0R3D6;M0R1A7;B2R4C0;M0R0P7;B4DM94;M0R117;B4DM74;B4DUV3;Q53HD3;Q76N54 Q02543 121 128 RPL18A 60S ribosomal protein L18a yes no 2 3.4346E-06 160.54 5 5 0.74658 0.95141 8.3313 5 Median 0.74658 0.95141 8.3313 5 0 Median NaN NaN NaN 0 0 Median 263180000 196550000 66626000 152020000 88538000 63486000 111160000 108020000 3139800 499 1436 509;510 1949;1950;1951;1952;1953;1954;1955;1956;1957;1958 2867;2868;2869;2870;2871;2872;2873;2874;2875;2876;2877;2878;2879;2880 2871 640 14 AHSVYNFEK FQMVYNEFQKFVQRKAHSVYNFEKPVVMKA KFVQRKAHSVYNFEKPVVMKAFEHLQQLEL K A H E K P 1 0 1 0 0 0 1 0 1 0 0 1 0 1 0 1 0 0 1 1 0 0 9 0 1093.5193 A8K7H4;O43929;Q53TH5;Q96B14;CON__Q2YDI2;B7Z632 A8K7H4 361 369 ORC4;ORC4L Origin recognition complex subunit 4 yes no 2 0.016011 55.37 2 0.54242 0.76144 NaN 1 Median NaN NaN NaN 0 0 Median 0.54242 0.76144 NaN 1 0 Median 6957300 4811900 2145500 0 0 0 6957300 4811900 2145500 + 500 636 511 1959;1960 2881;2882 2881 2 AHVFECNLESSVESIISPK AKIWLAAHWDKKLTKAHVFECNLESSVESI ECNLESSVESIISPKVKMALRTSGHLLLGV K A H P K V 1 0 1 0 1 0 3 0 1 2 1 1 0 1 1 4 0 0 0 2 0 0 19 0 2145.0412 A0A024R9J0;O60216;B3KUT8;E5RJW1;E5RJK5;E5RFV8;E5RIN7 A0A024R9J0 30 48 RAD21 Double-strand-break repair protein rad21 homolog yes no 3 3.9138E-05 51.819 1 0.63028 0.79864 NaN 1 Median 0.63028 0.79864 NaN 1 0 Median NaN NaN NaN 0 0 Median 6152800 3671200 2481600 6152800 3671200 2481600 0 0 0 501 223 512 1961 2883 2883 1 AHVTHPELK KYERFIRPMGLRFKKAHVTHPELKATFCLP GLRFKKAHVTHPELKATFCLPILGVKKNPS K A H L K A 1 0 0 0 0 0 1 0 2 0 1 1 0 0 1 0 1 0 0 1 0 0 9 0 1030.556 Q5J7U2;O95478 Q5J7U2 181 189 CDK105;NSA2 Ribosome biogenesis protein NSA2 homolog yes no 2;3 9.6364E-05 114.89 5 0.75881 0.94439 6.9329 5 Median 0.75881 0.94439 6.9329 5 0 Median NaN NaN NaN 0 0 Median 130940000 74537000 56408000 130940000 74537000 56408000 0 0 0 502 1221 513 1962;1963;1964;1965;1966 2884;2885;2886;2887;2888;2889 2884 6 AHVVPCFDASK NILFADTHIPGSPFKAHVVPCFDASKVKCS SPFKAHVVPCFDASKVKCSGPGLERATAGE K A H S K V 2 0 0 1 1 0 0 0 1 0 0 1 0 1 1 1 0 0 0 2 0 0 11 0 1229.5863 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 1152 1162 FLNA Filamin-A yes no 2 6.7013E-05 99.788 3 0.93175 1.1599 14.214 3 Median 0.93175 1.1599 14.214 3 0 Median NaN NaN NaN 0 0 Median 94172000 49842000 44330000 94172000 49842000 44330000 0 0 0 503 1287 514 1967;1968;1969 2890;2891;2892 2892 3 AHYNFK ______________________________ ______________________________ M A H F K K 1 0 1 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 1 0 0 0 6 0 778.37622 Q53GS0;D2CFK9;Q9BZE4 Q53GS0 2 7 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.030091 88.627 2 1 0.75625 0.98129 2.5553 3 Plateau 0.75419 0.98283 3.6114 2 0 Median 0.64821 0.98129 NaN 1 0 Median 251060000 144440000 106620000 232410000 133130000 99288000 18645000 11316000 7329000 504 975 515 1970;1971;1972 2893;2894;2895;2896 2895 4 AHYNFKK ______________________________ ______________________________ M A H K K I 1 0 1 0 0 0 0 0 1 0 0 2 0 1 0 0 0 0 1 0 0 0 7 1 906.47119 Q53GS0;D2CFK9;Q9BZE4 Q53GS0 2 8 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.023111 62.978 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1858500 0 1858500 1858500 0 1858500 0 0 0 505 975 516 1973;1974 2897;2898 2898 2 AIACVVTACSAELEK GLAGRTWAGKEELLKAIACVVTACSAELEK AIACVVTACSAELEKSVPNQPSTNEILQAV K A I E K S 4 0 0 0 2 0 2 0 0 1 1 1 0 0 0 1 1 0 0 2 0 0 15 0 1620.7851 J3KN16;Q5VYK3;B3KXF2;F6XAQ5 J3KN16 1763 1777 KIAA0368;ECM29 Proteasome-associated protein ECM29 homolog yes no 3 0.013279 24.558 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8693700 8693700 0 8693700 8693700 0 0 0 0 506 1130 517 1975 2899 2899 1 AIADTGANVVVTGGK NFSKGEENLMDAQVKAIADTGANVVVTGGK AIADTGANVVVTGGKVADMALHYANKYNIM K A I G K V 3 0 1 1 0 0 0 3 0 1 0 1 0 0 0 0 2 0 0 3 0 0 15 0 1371.7358 Q7Z759;Q53HU0;P50990;H7C4C8 Q7Z759 231 245 CCT8 T-complex protein 1 subunit theta yes no 2 5.6928E-21 167.2 3 0.28585 0.36337 18.691 3 Median 0.28585 0.36337 18.691 3 0 Median NaN NaN NaN 0 0 Median 21019000 14437000 6581800 21019000 14437000 6581800 0 0 0 507 1359 518 1976;1977;1978 2900;2901;2902;2903;2904 2901 5 AIAELGIYPAVDPLDSTSR ATTFAHLDATTVLSRAIAELGIYPAVDPLD LGIYPAVDPLDSTSRIMDPNIVGSEHYDVA R A I S R I 3 1 0 2 0 0 1 1 0 2 2 0 0 0 2 2 1 0 1 1 0 0 19 0 1987.0262 H0YH81;Q0QEN7;V9HW31;P06576 H0YH81 325 343 ATP5B;HEL-S-271 ATP synthase subunit beta;ATP synthase subunit beta, mitochondrial yes no 2 0.00072159 47.201 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11089000 0 11089000 0 0 0 11089000 0 11089000 508 1100 519 1979 2905 2905 1 AIAFLQQPR IKFEGAIYRKDIGFRAIAFLQQPRSLTYKE KDIGFRAIAFLQQPRSLTYKESGVDIAAGN R A I P R S 2 1 0 0 0 2 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 9 0 1042.5924 Q3B7A7;Q59HH3;P22102;Q15374;O14660 Q3B7A7 425 433 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 0.0026861 94.407 3 1 0.24513 0.33313 5.5892 2 Median 0.24513 0.33313 5.5892 2 0 Median NaN NaN NaN 0 0 Median 36887000 26976000 9910800 34582000 26976000 7606200 2304600 0 2304600 509 1289 520 1980;1981;1982;1983 2906;2907;2908;2909;2910 2907 5 AIAHPYSQALIQYVCGLGPR EFINRVNEVGVDVNRAIAHPYSQALIQYVC YSQALIQYVCGLGPRKGTHLLKILKQNNTR R A I P R K 3 1 0 0 1 2 0 2 1 2 2 0 0 0 2 1 0 0 2 1 0 0 20 0 2213.1415 Q7KZ85 Q7KZ85 976 995 SUPT6H Transcription elongation factor SPT6 yes yes 3 1.6263E-16 135.69 2 0.54738 0.74656 7.4695 2 Median 0.54738 0.74656 7.4695 2 0 Median NaN NaN NaN 0 0 Median 10633000 6451300 4181600 10633000 6451300 4181600 0 0 0 510 1609 521 1984;1985 2911;2912;2913 2911 3 AIANECQANFISIK LFYGPPGCGKTLLAKAIANECQANFISIKG KAIANECQANFISIKGPELLTMWFGESEAN K A I I K G 3 0 2 0 1 1 1 0 0 3 0 1 0 1 0 1 0 0 0 0 0 0 14 0 1577.7872 V9HW80;P55072;Q96IF9;Q9NTC4;Q0IIN5;Q9HAP0 V9HW80 530 543 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 2 0.0023521 47.559 1 0.56633 0.74143 NaN 1 Median 0.56633 0.74143 NaN 1 0 Median NaN NaN NaN 0 0 Median 5523500 3511600 2012000 5523500 3511600 2012000 0 0 0 511 1376 522 1986 2914 2914 1 AIAVLTSGGDAQGMNAAVR THEEHHAAKTLGIGKAIAVLTSGGDAQGMN LTSGGDAQGMNAAVRAVVRVGIFTGARVFF K A I V R A 5 1 1 1 0 1 0 3 0 1 1 0 1 0 0 1 1 0 0 2 0 0 19 0 1800.9152 A0A024R0Y5;P08237;A0A0S2Z4A1;Q96I60;A0A0S2Z4I1;A0A0S2Z4A8;F8VSL1;F8VX13;F8VNX2;F8VZQ1;F8VP00;F8W1J8;F8VSF7;F8VW30;F8VUB8;F8VYK8;F8VTQ3;F8VZI0;F8VVE3 A0A024R0Y5 17 35 PFKM ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type yes no 2 0.049634 70.438 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 512 44 523 1987 2915 2915 1 AIAYLFPSGLFEK ______________________________ DRAIAYLFPSGLFEKRARPVMKHPEQIFPR R A I E K R 2 0 0 0 0 0 1 1 0 1 2 1 0 2 1 1 0 0 1 0 0 0 13 0 1454.781 Q86WV4;P82933 Q86WV4 13 25 MRPS9 28S ribosomal protein S9, mitochondrial yes no 2 0.00055819 71.349 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8294700 8294700 0 8294700 8294700 0 0 0 0 513 1431 524 1988 2916 2916 1 AIDDSSASISLAQLTK TYVISRTEPAMATTKAIDDSSASISLAQLT IDDSSASISLAQLTKTANLAEANASEEDKI K A I T K T 3 0 0 2 0 1 0 0 0 2 2 1 0 0 0 4 1 0 0 0 0 0 16 0 1618.8414 I3L3Y2;H3BUN0;Q7Z6E9 I3L3Y2 101 116 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 2 0.00064453 94.688 1 0.41135 0.50831 NaN 1 Median 0.41135 0.50831 NaN 1 0 Median NaN NaN NaN 0 0 Median 1304000 1055900 248050 1304000 1055900 248050 0 0 0 514 1110 525 1989 2917 2917 0 AIEALHGHELRPGR QFAFVHMRENAGALRAIEALHGHELRPGRA RAIEALHGHELRPGRALVVEMSRPRPLNTW R A I G R A 2 2 0 0 0 0 2 2 2 1 2 0 0 0 1 0 0 0 0 0 0 0 14 1 1554.8379 A0A0S2Z4Z0;Q96PK6;A0A0S2Z567;A0A0A6YYI9;A0A0S2Z5V2;F8WDX3;A0A0A0MSL8;B8ZZ74 A0A0S2Z4Z0 51 64 RBM14;RBM14-RBM4 RNA-binding protein 14 yes no 3;4 6.506E-07 84.566 4 0.33951 0.45548 21.075 4 Median 0.33951 0.45548 21.075 4 0 Median NaN NaN NaN 0 0 Median 106710000 77001000 29712000 106710000 77001000 29712000 0 0 0 515 472 526 1990;1991;1992;1993 2918;2919;2920;2921;2922 2920 5 AIEEGTLEEIEEEVR EVDYSDSLTEKQWLKAIEEGTLEEIEEEVR AIEEGTLEEIEEEVRQKKSSRKRKRDSDAG K A I V R Q 1 1 0 0 0 0 7 1 0 2 1 0 0 0 0 0 1 0 0 1 0 0 15 0 1744.8367 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;B4E0F1;B4DSI8;B3KNW7;K7EP28 A7E2E1 1391 1405 SMARCA4 Transcription activator BRG1 yes no 2 1.9462E-22 170.4 4 3 0.97564 1.398 30.346 6 Median 0.78079 1.0481 16.403 3 0 Median 1.04 1.701 17.007 3 0 Median 139810000 68194000 71619000 35845000 16813000 19032000 103970000 51381000 52587000 516 403 527 1994;1995;1996;1997;1998;1999;2000 2923;2924;2925;2926;2927;2928;2929;2930;2931;2932;2933;2934 2929 12 AIEEQMVAAK IIRKVVKLFNEVQEKAIEEQMVAAKDVVME EVQEKAIEEQMVAAKDVVMEPTMKTLSDDL K A I A K D 3 0 0 0 0 1 2 0 0 1 0 1 1 0 0 0 0 0 0 1 0 0 10 0 1088.5536 Q9H0A0;A0A087WV29 Q9H0A0 913 922 NAT10 N-acetyltransferase 10 yes no 2 0.00012077 91.853 1 0.7409 1.04 NaN 1 Median NaN NaN NaN 0 0 Median 0.7409 1.04 NaN 1 0 Median 4069100 2538700 1530400 0 0 0 4069100 2538700 1530400 517 1730 528 2001 2935;2936 2936 785 2 AIEIVESDVK AVSGDVRKALDVCRRAIEIVESDVKSQTIL DVCRRAIEIVESDVKSQTILKPLSECKSPS R A I V K S 1 0 0 1 0 0 2 0 0 2 0 1 0 0 0 1 0 0 0 2 0 0 10 0 1101.5918 B2R935;A0A024R1S2;Q99741 B2R935 397 406 CDC6 Cell division control protein 6 homolog yes no 2 0.012582 56.258 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 518 64 529 2002 2937 2937 1 AIELLQEFSDQHPENAAEIK LIQAAQLCREKQHTKAIELLQEFSDQHPEN QEFSDQHPENAAEIKLTMAQLKISQGNISK K A I I K L 3 0 1 1 0 2 4 0 1 2 2 1 0 1 1 1 0 0 0 0 0 0 20 0 2281.1226 V9HWK0;O76094;Q86X80;A0PJJ5;Q71V07;Q0D2M6;D6RDY6;O15302 V9HWK0 357 376 HEL103;SRP72 Signal recognition particle subunit SRP72 yes no 3 1.0215E-13 95.873 4 2 0.60763 0.7709 17.529 4 Median 0.60763 0.7709 17.529 4 0 Median NaN NaN NaN 0 0 Median 40634000 23177000 17457000 34219000 23177000 11042000 6414900 0 6414900 519 1211 530 2003;2004;2005;2006;2007;2008 2938;2939;2940;2941;2942;2943;2944;2945;2946 2942 9 AIEMFMNK AGHHAEVVVDPEDERAIEMFMNKNPPARRT VDPEDERAIEMFMNKNPPARRTLADIIMEK R A I N K N 1 0 1 0 0 0 1 0 0 1 0 1 2 1 0 0 0 0 0 0 0 0 8 0 982.46161 Q13895;F8WBL2;H7BY94 Q13895 132 139 BYSL Bystin yes no 2 0.020438 40.103 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 909440 0 909440 0 0 0 909440 0 909440 520 1480 531 2009 2947 2947 667;668 1 AIEPPPLDAVIEAEHTLR IKLLRLGGIGQFLAKAIEPPPLDAVIEAEH PPPLDAVIEAEHTLRELDALDANDELTPLG K A I L R E 3 1 0 1 0 0 3 0 1 2 2 0 0 0 3 0 1 0 0 1 0 0 18 0 1970.0473 Q08211;B3KU66 Q08211 820 837 DHX9 ATP-dependent RNA helicase A yes no 2;3 5.4216E-07 101.08 5 2 0.6702 0.92963 5.2751 6 Median 0.67482 0.92979 0.61467 4 0 Median 0.51252 0.84434 2.513 2 0 Median 879630000 543820000 335810000 515460000 302230000 213230000 364170000 241590000 122580000 521 1448 532 2010;2011;2012;2013;2014;2015;2016 2948;2949;2950;2951;2952;2953;2954;2955;2956;2957;2958 2950 11 AIETTDIISR LGLKFNKIVHSSMTRAIETTDIISRHLPGV SSMTRAIETTDIISRHLPGVCKVSTDLLRE R A I S R H 1 1 0 1 0 0 1 0 0 3 0 0 0 0 0 1 2 0 0 0 0 0 10 0 1117.5979 Q96HS1;F5GXG4 Q96HS1 153 162 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 2 0.0009598 123.35 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 522 1688 533 2017 2959 2959 1 AIEVLSDEHAR AEIYGVTHTRGIYQKAIEVLSDEHAREMCL IYQKAIEVLSDEHAREMCLRFADMECKLGE K A I A R E 2 1 0 1 0 0 2 0 1 1 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1238.6255 Q68CN2;Q71SV8;Q9HCS7 Q68CN2 506 516 DKFZp762C1015;XAB2 Pre-mRNA-splicing factor SYF1 yes no 2 0.014573 55.567 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 523 1582 534 2018 2960 2960 1 AIFAGYK ______________________________ MSGRLWSKAIFAGYKRGLRNQREHTALLKI K A I Y K R 2 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 1 0 0 0 7 0 768.41703 P18077;F8WBS5;F8WB72;C9K025 P18077 9 15 RPL35A 60S ribosomal protein L35a yes no 1;2 0.031949 120.76 5 2 0.71786 0.91649 4.8235 6 Median 0.71826 0.93075 5.1828 5 0 Median 0.58108 0.90246 NaN 1 0 Median 684180000 418300000 265880000 641230000 384600000 256630000 42953000 33704000 9248600 524 1280 535 2019;2020;2021;2022;2023;2024;2025 2961;2962;2963;2964;2965;2966;2967 2962 7 AIFAGYKR ______________________________ SGRLWSKAIFAGYKRGLRNQREHTALLKIE K A I K R G 2 1 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 1 0 0 0 8 1 924.51814 P18077;F8WBS5;F8WB72;C9K025 P18077 9 16 RPL35A 60S ribosomal protein L35a yes no 2;3 0.0017546 86.512 5 3 0.69429 0.94239 15.864 7 Median 0.75509 0.99469 8.0414 4 0 Median 0.49151 0.79162 19.15 3 0 Median 127700000 73853000 53842000 92637000 52370000 40267000 35059000 21483000 13576000 525 1280 536 2026;2027;2028;2029;2030;2031;2032;2033 2968;2969;2970;2971;2972;2973;2974;2975;2976;2977;2978 2972 11 AIFDQLMTFGIEPFK VLQIDDVTIKISALKAIFDQLMTFGIEPFK AIFDQLMTFGIEPFKTKKIKTLHCEGTEIN K A I F K T 1 0 0 1 0 1 1 1 0 2 1 1 1 3 1 0 1 0 0 0 0 0 15 0 1755.8906 H0Y9Z8;Q9BPX3 Q9BPX3 644 658 NCAPG Condensin complex subunit 3 no no 2 0.00014863 92.781 2 0.73336 0.967 NaN 1 Median 0.73336 0.967 NaN 1 0 Median NaN NaN NaN 0 0 Median 4203300 2983400 1220000 4203300 2983400 1220000 0 0 0 526 1706;1096 537 2034;2035 2979;2980 2980 391 1 AIFENTLSTYPK FAQLEFQLGDAERAKAIFENTLSTYPKRTD RAKAIFENTLSTYPKRTDVWSVYIDMTIKH K A I P K R 1 0 1 0 0 0 1 0 0 1 1 1 0 1 1 1 2 0 1 0 0 0 12 0 1382.7082 Q14690 Q14690 1782 1793 PDCD11 Protein RRP5 homolog yes yes 2 8.0875E-10 114.5 2 1.3433 1.6645 NaN 1 Median 1.3433 1.6645 NaN 1 0 Median NaN NaN NaN 0 0 Median 36236000 25656000 10579000 36236000 25656000 10579000 0 0 0 527 1494 538 2036;2037 2981;2982;2983 2983 3 AIFFNR YGVRESVFTVEGGHRAIFFNRIGGVQQDTI VFTVEGGHRAIFFNRIGGVQQDTILAEGLH R A I N R I 1 1 1 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 6 0 766.41261 J3KPX7;Q99623;F5GY37;B4DW05;F5GWA7;F5H3X6;F5H2D2;F5H0C5 J3KPX7 49 54 PHB2 Prohibitin-2 yes no 2 0.026663 120.78 3 0.55604 0.76825 16.032 3 Median 0.55604 0.76825 16.032 3 0 Median NaN NaN NaN 0 0 Median 222750000 135040000 87709000 222750000 135040000 87709000 0 0 0 528 1133 539 2038;2039;2040 2984;2985;2986 2984 3 AIFLADGNVFTTGFSR VAEKEKAHEGARPMRAIFLADGNVFTTGFS IFLADGNVFTTGFSRMSERQLALWNPKNMQ R A I S R M 2 1 1 1 0 0 0 2 0 1 1 0 0 3 0 1 2 0 0 1 0 0 16 0 1714.8679 B4DMH3;Q53G58;B3KN06;A0A024RBI5;Q59EA2;Q9ULV4;B7Z9V0;B4E3S0 B4DMH3 187 202 CORO1C Coronin;Coronin-1C yes no 2 1.9441E-42 198.97 4 2 1.3805 1.9072 32.502 6 Median 1.3388 1.8303 6.4705 4 0 Median 2.11 3.3513 12.936 2 0 Median 402590000 167510000 235080000 328620000 144560000 184070000 73971000 22955000 51015000 529 274 540 2041;2042;2043;2044;2045;2046 2987;2988;2989;2990;2991;2992;2993;2994;2995;2996;2997;2998;2999;3000 2989 14 AIFQTIQNR IDDEDNPVDEYQIFKAIFQTIQNRNPVWYQ EYQIFKAIFQTIQNRNPVWYQALTHGLNEE K A I N R N 1 1 1 0 0 2 0 0 0 2 0 0 0 1 0 0 1 0 0 0 0 0 9 0 1089.5931 O95373;B3KNG9;B3KQG6 O95373 964 972 IPO7 Importin-7 yes no 2 0.030508 57.177 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4462100 4462100 0 4462100 4462100 0 0 0 0 530 1219 541 2047 3001 3001 1 AIFTTGQGASAVGLTAYVQR AKSQFLKYIEKVSSRAIFTTGQGASAVGLT GQGASAVGLTAYVQRHPVSREWTLEAGALV R A I Q R H 4 1 0 0 0 2 0 3 0 1 1 0 0 1 0 1 3 0 1 2 0 0 20 0 2010.0534 B4DSV5;B3KXZ4;H0Y8E6;P49736;B7Z8Z6;Q9BWF4 B4DSV5 413 432 MCM2 DNA helicase;DNA replication licensing factor MCM2 yes no 2 0.00037672 81.128 3 0.37609 0.53984 18.232 3 Median 0.37609 0.53984 18.232 3 0 Median NaN NaN NaN 0 0 Median 12025000 8322300 3702900 12025000 8322300 3702900 0 0 0 531 790 542 2048;2049;2050 3002;3003;3004;3005 3004 4 AIGGGLSSVGGGSSTIK SGLGVGGGFSSSSGRAIGGGLSSVGGGSST GGGLSSVGGGSSTIKYTTTSSSSRKSYKH_ R A I I K Y 1 0 0 0 0 0 0 6 0 2 1 1 0 0 0 4 1 0 0 1 0 0 17 0 1446.7678 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;B4DRY0 B4DRR0 505 521 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C yes no 2 4.1249E-08 120.84 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25655000 25655000 0 0 0 0 25655000 25655000 0 + 532 459 543 2051;2052 3006;3007 3007 2 AIGNTELENK RRLEELLRQMCQAAKAIGNTELENKFAEGI CQAAKAIGNTELENKFAEGITKIKRDIVFA K A I N K F 1 0 2 0 0 0 2 1 0 1 1 1 0 0 0 0 1 0 0 0 0 0 10 0 1087.551 P42285;A8K6I4;B4E3M6;H0YAC4 P42285 1013 1022 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 0.0012247 91.867 3 0.59729 0.754 NaN 1 Median 0.59729 0.754 NaN 1 0 Median NaN NaN NaN 0 0 Median 10080000 7062000 3017900 10080000 7062000 3017900 0 0 0 533 1336 544 2053;2054;2055 3008;3009;3010;3011 3010 4 AIGPHDVLATLLNNLK AIRRATVNTFGYIAKAIGPHDVLATLLNNL IGPHDVLATLLNNLKVQERQNRVCTTVAIA K A I L K V 2 0 2 1 0 0 0 1 1 1 4 1 0 0 1 0 1 0 0 1 0 0 16 0 1687.9621 O75533;H7C341 O75533 1087 1102 SF3B1 Splicing factor 3B subunit 1 yes no 3 4.1136E-25 128.85 5 0.64494 0.80491 12.28 3 Median 0.64494 0.80491 12.28 3 0 Median NaN NaN NaN 0 0 Median 29774000 18841000 10933000 29774000 18841000 10933000 0 0 0 534 1204 545 2056;2057;2058;2059;2060 3012;3013;3014;3015;3016;3017;3018;3019 3016 8 AIGSASEGAQSSLQEVYHK FHMDPSGTFVQCDARAIGSASEGAQSSLQE ASEGAQSSLQEVYHKSMTLKEAIKSSLIIL R A I H K S 3 0 0 0 0 2 2 2 1 1 1 1 0 0 0 4 0 0 1 1 0 0 19 0 1960.949 Q5U0A0;A0A109NGN6;P28066 Q5U0A0 169 187 PSMA5 Proteasome subunit alpha type;Proteasome subunit alpha type-5 yes no 2;3 1.7186E-43 183 6 0.28 0.33103 4.7907 3 Plateau 0.28 0.33103 4.7907 3 0 Plateau NaN NaN NaN 0 0 Median 79945000 62814000 17131000 79945000 62814000 17131000 0 0 0 535 491 546 2061;2062;2063;2064;2065;2066 3020;3021;3022;3023;3024;3025;3026;3027;3028;3029 3022 10 AIGTDEDLAHSSIR SACTSASLEPSYVLRAIGTDEDLAHSSIRF RAIGTDEDLAHSSIRFGIGRFTTEEEVDYT R A I I R F 2 1 0 2 0 0 1 1 1 2 1 0 0 0 0 2 1 0 0 0 0 0 14 0 1483.7267 Q5QP19;Q53FP3;B2R5S3;Q9Y697;H7C0I5;H0YGN5;B4DNL7 Q5QP19 334 347 NFS1 Cysteine desulfurase, mitochondrial yes no 3 0.0058057 21.666 1 2 1.1791 1.5615 34.852 3 Median 0.66198 0.88378 NaN 1 0 Median 1.2426 1.6122 4.514 2 0 Median 16110000 8047800 8062100 7262900 4126900 3136000 8847000 3920900 4926100 536 691 547 2067;2068;2069 3030;3031;3032 3032 3 AIGVLTSGGDAQGMNAAVR GSLRKFLEHLSGAGKAIGVLTSGGDAQGMN LTSGGDAQGMNAAVRAVVRMGIYVGAKVYF K A I V R A 4 1 1 1 0 1 0 4 0 1 1 0 1 0 0 1 1 0 0 2 0 0 19 0 1786.8996 P17858;Q01813 Q01813 26 44 PFKL;PFKP ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, platelet type no no 2 5.966E-07 67.519 1 2 6.127 8.7353 18.534 2 Median NaN NaN NaN 0 0 Median 6.127 8.7353 18.534 2 0 Median 23432000 5142500 18290000 1500600 1500600 0 21931000 3641900 18290000 537 1434;1279 548;549 2070;2071;2072 3033;3034;3035 3034 534 3 AIHTAPVATMAFDPTSTLLATGGCDGAVR AQWAWQEGSVTRLWKAIHTAPVATMAFDPT TSTLLATGGCDGAVRVWDIVRHYGTHHFRG K A I V R V 6 1 0 2 1 0 0 3 1 1 2 0 1 1 2 1 5 0 0 2 0 0 29 0 2900.4161 Q12788;J3KNP2 Q12788 106 134 TBL3 Transducin beta-like protein 3 yes no 3 0.0015335 45.125 1 0.84554 1.1783 NaN 1 Median 0.84554 1.1783 NaN 1 0 Median NaN NaN NaN 0 0 Median 1985600 948460 1037100 1985600 948460 1037100 0 0 0 538 1456 550 2073 3036 3036 659 1 AIHVLDVEQGQLER FSEDGQKLITVSKDKAIHVLDVEQGQLERR KAIHVLDVEQGQLERRVSKAHGAPINSLLL K A I E R R 1 1 0 1 0 2 2 1 1 1 2 0 0 0 0 0 0 0 0 2 0 0 14 0 1605.8475 Q9H6Y2 Q9H6Y2 107 120 WDR55 WD repeat-containing protein 55 yes yes 3 0.0051835 71.976 2 0.72981 0.97885 11.442 2 Median 0.72981 0.97885 11.442 2 0 Median NaN NaN NaN 0 0 Median 22748000 12145000 10603000 22748000 12145000 10603000 0 0 0 539 1740 551 2074;2075 3037;3038 3038 1 AIIAVLSTEEQSAGLQQPSGIGQRPR APSKPWSQVDEATIRAIIAVLSTEEQSAGL SAGLQQPSGIGQRPRPMSSEELPLASSWRS R A I P R P 3 2 0 0 0 4 2 3 0 3 2 0 0 0 2 3 1 0 0 1 0 0 26 1 2705.446 Q6ZMY0;Q9H6S0 Q6ZMY0 1065 1090 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 yes no 3 0.0016213 46.833 2 0.24259 0.33578 NaN 1 Median 0.24259 0.33578 NaN 1 0 Median NaN NaN NaN 0 0 Median 6101100 5636300 464800 6101100 5636300 464800 0 0 0 540 1602 552 2076;2077 3039;3040 3039 2 AIIDEFEQK SVVGKLRRGAKPEGKAIIDEFEQKLRACHT AKPEGKAIIDEFEQKLRACHTRGLDGIKEL K A I Q K L 1 0 0 1 0 1 2 0 0 2 0 1 0 1 0 0 0 0 0 0 0 0 9 0 1091.5499 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1280 1288 NCAPD2 Condensin complex subunit 1 yes no 1;2 6.148E-10 166.68 5 2 0.72052 0.93465 22.534 6 Median 0.73816 0.95589 19.263 4 0 Median 0.47336 0.75151 1.6257 2 0 Median 458210000 276470000 181740000 292770000 162900000 129870000 165440000 113570000 51868000 541 757 553 2078;2079;2080;2081;2082;2083;2084 3041;3042;3043;3044;3045;3046;3047;3048;3049;3050;3051;3052 3044 12 AIIEADPLTTTR ERSGRPSEVDNDQLRAIIEADPLTTTREVA QLRAIIEADPLTTTREVAEELNVNHSTVVR R A I T R E 2 1 0 1 0 0 1 0 0 2 1 0 0 0 1 0 3 0 0 0 0 0 12 0 1299.7034 B9ZVV8;B4DND2;Q96H41;Q53H47 B9ZVV8 183 194 SETMAR Histone-lysine N-methyltransferase SETMAR;Histone-lysine N-methyltransferase;Transposon Hsmar1 transposase yes no 2 0.0041542 52.79 1 0.71625 1.0127 NaN 1 Median 0.71625 1.0127 NaN 1 0 Median NaN NaN NaN 0 0 Median 5488300 3591800 1896500 5488300 3591800 1896500 0 0 0 542 836 554 2085 3053;3054 3053 2 AIIIFVPVPQLK NITAAKEIEVGGGRKAIIIFVPVPQLKSFQ GRKAIIIFVPVPQLKSFQKIQVRLVRELEK K A I L K S 1 0 0 0 0 1 0 0 0 3 1 1 0 1 2 0 0 0 0 2 0 0 12 0 1336.8482 P62081;B5MCP9 P62081 59 70 RPS7 40S ribosomal protein S7 yes no 2 7.4597E-12 123.92 7 2 0.89606 1.1407 34.125 7 Median 0.90259 1.1587 6.6617 5 0 Median 0.37565 0.59655 2.2978 2 0 Median 2367900000 1236600000 1131200000 2288200000 1179600000 1108600000 79698000 57050000 22649000 543 1395 555 2086;2087;2088;2089;2090;2091;2092;2093;2094 3055;3056;3057;3058;3059;3060;3061;3062;3063;3064;3065;3066;3067;3068;3069;3070;3071;3072;3073;3074;3075 3064 21 AIILAAAPGEK VLQAGQYGVAQTRRRAIILAAAPGEKLPLF TRRRAIILAAAPGEKLPLFPEPLHVFAPRA R A I E K L 4 0 0 0 0 0 1 1 0 2 1 1 0 0 1 0 0 0 0 0 0 0 11 0 1052.623 A0A024R7E3;P26358;Q59FP7;B3KVA0;K7ENW7;I6L9H2 A0A024R7E3 1375 1385 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 no no 2 0.014345 44.203 1 0.99011 1.3286 NaN 1 Median NaN NaN NaN 0 0 Median 0.99011 1.3286 NaN 1 0 Median 3575600 2105000 1470600 0 0 0 3575600 2105000 1470600 544 176;1129 556 2095 3076 3076 1 AIILTR KGRIYQLLAKASYKKAIILTREATGHFQES LLAKASYKKAIILTREATGHFQESEPFSHI K A I T R E 1 1 0 0 0 0 0 0 0 2 1 0 0 0 0 0 1 0 0 0 0 0 6 0 685.44866 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 532 537 NCAPD2 Condensin complex subunit 1 yes no 2 0.0325 116 3 2 0.57342 0.77367 14.597 5 Median 0.63391 0.86335 9.2875 3 0 Median 0.44104 0.67419 3.5845 2 0 Median 139610000 84868000 54747000 102100000 59279000 42822000 37514000 25588000 11925000 545 757 557 2096;2097;2098;2099;2100 3077;3078;3079;3080;3081 3077 5 AIIRENEFSFEDNAIR PDMYVVTYVGDKDSRAIIRENEFSFEDNAI IIRENEFSFEDNAIRGGKKASRMKKEASVK R A I I R G 2 2 2 1 0 0 3 0 0 3 0 0 0 2 0 1 0 0 0 0 0 0 16 1 1922.9486 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 788 803 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 8.4246E-06 102.39 4 0.7063 0.96726 10.293 4 Median 0.7063 0.96726 10.293 4 0 Median NaN NaN NaN 0 0 Median 63658000 37125000 26533000 63658000 37125000 26533000 0 0 0 546 428 558 2101;2102;2103;2104 3082;3083;3084;3085;3086;3087;3088;3089 3084 8 AILAGAQPIEEMR PITSPIENIIAIYEKAILAGAQPIEEMRHT EKAILAGAQPIEEMRHTIVDILTMKSQEKA K A I M R H 3 1 0 0 0 1 2 1 0 2 1 0 1 0 1 0 0 0 0 0 0 0 13 0 1397.7337 B2RMQ4;Q8WWK9 B2RMQ4 486 498 CKAP2 Cytoskeleton-associated protein 2 yes no 2 0.0018484 49.5 2 0.70916 1.0407 6.021 2 Median NaN NaN NaN 0 0 Median 0.70916 1.0407 6.021 2 0 Median 27074000 16083000 10992000 0 0 0 27074000 16083000 10992000 547 745 559 2105;2106 3090;3091 3091 257 2 AILCLLLGGVER KSLAPSIHGHDYVKKAILCLLLGGVERDLE VKKAILCLLLGGVERDLENGSHIRGDINIL K A I E R D 1 1 0 0 1 0 1 2 0 1 4 0 0 0 0 0 0 0 0 1 0 0 12 0 1312.7537 Q8NHX6;Q53HJ4;B2R7C5;A0A0S2Z4T1;A0A0S2Z492;P25205;B4DUQ9;J3KQ69;B4DS46 Q8NHX6 316 327 HCC5;MCM3 DNA helicase;DNA replication licensing factor MCM3 yes no 2 1.901E-07 99.653 2 0.31038 0.41542 13.679 2 Median 0.31038 0.41542 13.679 2 0 Median NaN NaN NaN 0 0 Median 14955000 11113000 3842700 14955000 11113000 3842700 0 0 0 548 463 560 2107;2108 3092;3093;3094;3095 3092 4 AILLPDLSEPNNEPLFSPASEVPRK SFTKSSRSSRTRSSKAILLPDLSEPNNEPL NNEPLFSPASEVPRKAKAKKIEVPAQLKEL K A I R K A 2 1 2 1 0 0 3 0 0 1 4 1 0 1 5 3 0 0 0 1 0 0 25 1 2732.4385 Q8WYP5;B3KRD0;H7C4S1 Q8WYP5 2104 2128 AHCTF1 Protein ELYS yes no 3 4.0524E-23 132.65 4 2 0.68533 0.90152 12.794 6 Median 0.7056 0.92614 2.9528 4 0 Median 0.42311 0.73364 8.9063 2 0 Median 300470000 189720000 110750000 141460000 82309000 59150000 159010000 107410000 51602000 549 1670 561 2109;2110;2111;2112;2113;2114 3096;3097;3098;3099;3100;3101;3102;3103;3104;3105;3106;3107 3096 12 AILMALR PGRVREALRQQDFTRAILMALRLNESKLVQ LRQQDFTRAILMALRLNESKLVQEALEAVP R A I L R L 2 1 0 0 0 0 0 0 0 1 2 0 1 0 0 0 0 0 0 0 0 0 7 0 786.47858 Q15269;A0A0B4J2E5 Q15269 762 768 PWP2 Periodic tryptophan protein 2 homolog yes no 2 0.035496 44.611 2 0.58074 0.8231 1.149 2 Median NaN NaN NaN 0 0 Median 0.58074 0.8231 1.149 2 0 Median 17199000 10387000 6812500 0 0 0 17199000 10387000 6812500 550 1508 562 2115;2116 3108;3109 3108 2 AILNGIDSINK DLEKKQQLLRAATGKAILNGIDSINKVLDH ATGKAILNGIDSINKVLDHFRRKGINQHVQ K A I N K V 1 0 2 1 0 0 0 1 0 3 1 1 0 0 0 1 0 0 0 0 0 0 11 0 1156.6452 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 504 514 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.036649 66.299 1 0.49968 0.63702 NaN 1 Median 0.49968 0.63702 NaN 1 0 Median NaN NaN NaN 0 0 Median 1643700 892600 751060 1643700 892600 751060 0 0 0 551 663 563 2117 3110 3110 1 AILPCIK IYAYGFEKPSAIQQRAILPCIKGYDVIAQA KPSAIQQRAILPCIKGYDVIAQAQSGTGKT R A I I K G 1 0 0 0 1 0 0 0 0 2 1 1 0 0 1 0 0 0 0 0 0 0 7 0 813.47825 A8K7F6;P60842;A8K088;J3KT12;J3KTB5;Q59F68;J3QS69;J3QR64;J3QL43;J3QLN6;J3QKZ9;B4E047;J3KS25;B4E102;J3KS93;J3KT04;J3QQP0 A8K7F6 62 68 EIF4A1 Eukaryotic initiation factor 4A-I yes no 2 0.041035 85.306 2 0.31458 0.39483 3.9515 2 Median 0.31458 0.39483 3.9515 2 0 Median NaN NaN NaN 0 0 Median 97868000 73883000 23986000 97868000 73883000 23986000 0 0 0 552 634 564 2118;2119 3111;3112 3112 2 AILVDLEPGTMDSVR SVYYNEATGGKYVPRAILVDLEPGTMDSVR AILVDLEPGTMDSVRSGPFGQIFRPDNFVF R A I V R S 1 1 0 2 0 0 1 1 0 1 2 0 1 0 1 1 1 0 0 2 0 0 15 0 1614.8287 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;B4DMJ5;G3V5W4;G3V2R8;G3V3R4;G3V2N6;Q9BVA1;Q13885;B2R6L0;A5D907;A5D906;Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q53G92 Q5JP53 45 59 TUBB;TUBB3;TUBB2B;TUBB2A Tubulin beta chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain no no 2 5.4412E-14 159.94 7 3 3.2245 5.2706 138.8 3 Median 0.36316 0.48301 NaN 1 0 Median 3.2368 5.3457 1.9994 2 0 Median 506110000 156510000 349600000 73608000 51231000 22377000 432510000 105280000 327220000 553 1241;1479;416 565;566 2120;2121;2122;2123;2124;2125;2126;2127;2128;2129 3113;3114;3115;3116;3117;3118;3119;3120;3121;3122;3123;3124;3125;3126 3114 133 14 AILVVFANK KSELVAMLEEEELRKAILVVFANKQDMEQA EEELRKAILVVFANKQDMEQAMTSSEMANS K A I N K Q 2 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 2 0 0 9 0 973.59605 F8VYN9;P40616;B4DZG7 F8VYN9 119 127 ARL1 ADP-ribosylation factor-like protein 1 yes no 2 0.0026609 81.635 2 0.28948 0.36317 NaN 1 Median 0.28948 0.36317 NaN 1 0 Median NaN NaN NaN 0 0 Median 12683000 9658900 3024300 12683000 9658900 3024300 0 0 0 554 1063 567 2130;2131 3127;3128 3127 2 AINCATSGVVGLVNCLR GILADEDSSRPVWLKAINCATSGVVGLVNC NCATSGVVGLVNCLRREPGGNRLRCVLLSN K A I L R R 2 1 2 0 2 0 0 2 0 1 2 0 0 0 0 1 1 0 0 3 0 0 17 0 1802.9131 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1443 1459 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00097185 65.234 2 0.77824 1.0844 NaN 1 Median 0.77824 1.0844 NaN 1 0 Median NaN NaN NaN 0 0 Median 6525300 5249200 1276200 6525300 5249200 1276200 0 0 0 555 486 568 2132;2133 3129;3130;3131 3130 3 AINIGQLVDVK EPKKEPAGHSQKKGKAINIGQLVDVKVLEK KKGKAINIGQLVDVKVLEKTKDGLEVAVLP K A I V K V 1 0 1 1 0 1 0 1 0 2 1 1 0 0 0 0 0 0 0 2 0 0 11 0 1168.6816 Q14690;B4DH82;B4DES7 Q14690 632 642 PDCD11 Protein RRP5 homolog yes no 2 1.5072E-06 116.3 4 2 0.85115 1.3683 10.097 4 Linear 0.96347 1.2045 15.483 2 0 Median 0.81149 1.2956 3.5943 2 0 Median 171180000 91172000 80008000 81380000 41947000 39433000 89800000 49225000 40575000 556 1494 569 2134;2135;2136;2137;2138;2139 3132;3133;3134;3135;3136;3137;3138;3139 3135 8 AINQQTGAFVEISR HKCGLVIGRGGENVKAINQQTGAFVEISRQ KAINQQTGAFVEISRQLPPNGDPNFKLFII K A I S R Q 2 1 1 0 0 2 1 1 0 2 0 0 0 1 0 1 1 0 0 1 0 0 14 0 1532.7947 A0A087WTP3;Q92945;M0R3J3 A0A087WTP3 449 462 KHSRP Far upstream element-binding protein 2 yes no 2 2.8003E-05 116.84 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 557 335 570 2140 3140 3140 1 AIPLALEGK VTDLGWSRPTLIQEKAIPLALEGKDLLARA TLIQEKAIPLALEGKDLLARARTGSGKTAA K A I G K D 2 0 0 0 0 0 1 1 0 1 2 1 0 0 1 0 0 0 0 0 0 0 9 0 910.54877 Q9NY93;Q53HB9;G3V0G3;F8WDT8;F8WEI3 Q9NY93 37 45 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 0.043905 40.882 1 0.77913 1.1801 NaN 1 Median NaN NaN NaN 0 0 Median 0.77913 1.1801 NaN 1 0 Median 14252000 8478500 5773300 0 0 0 14252000 8478500 5773300 558 1768 571 2141 3141 3141 1 AIPQLQGYLR IDQKAVDSQILPKIKAIPQLQGYLRSVFAL LPKIKAIPQLQGYLRSVFALTNGIYPHKLV K A I L R S 1 1 0 0 0 2 0 1 0 1 2 0 0 0 1 0 0 0 1 0 0 0 10 0 1157.6557 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7 Q8TBK5 263 272 RPL6 60S ribosomal protein L6 yes no 2 6.0784E-06 139.28 4 2 0.72346 0.99653 5.9319 6 Median 0.74219 1.0243 5.0789 4 0 Median 0.57737 0.95497 4.4535 2 0 Median 2812200000 1653900000 1158300000 2325400000 1341100000 984320000 486780000 312790000 173990000 559 277 572 2142;2143;2144;2145;2146;2147 3142;3143;3144;3145;3146;3147;3148;3149;3150;3151;3152;3153;3154;3155;3156;3157;3158;3159;3160;3161 3148 20 AIPTVNHSGTFSPQAPVPTTVPVVDVR QMNINIATWGRLVRRAIPTVNHSGTFSPQA PQAPVPTTVPVVDVRIPQLAPPASDSTVTK R A I V R I 2 1 1 1 0 1 0 1 1 1 0 0 0 1 5 2 4 0 0 6 0 0 27 0 2785.4763 Q16513;B1AL79 Q16513 524 550 PKN2 Serine/threonine-protein kinase N2 yes no 3 0.0015653 46.145 4 0.34205 0.47501 12.7 4 Median 0.34205 0.47501 12.7 4 0 Median NaN NaN NaN 0 0 Median 26118000 19538000 6580300 26118000 19538000 6580300 0 0 0 560 1519 573 2148;2149;2150;2151 3162;3163;3164;3165;3166 3162 5 AIPVSPSAVEEDEDEDGHTVVATAR EKPKYQINNISTVPKAIPVSPSAVEEDEDE EDEDEDGHTVVATARGIFNSNGGVLSSIET K A I A R G 4 1 0 3 0 0 4 1 1 1 0 0 0 0 2 2 2 0 0 4 0 0 25 0 2593.2144 A0A087X0K9;Q6MZU1;G5E9E7;A9CQZ8;G3V1L9;Q07157;Q68DX9;B4DZK4;H0Y3R8 A0A087X0K9 1521 1545 TJP1;DKFZp686A1195;DKFZp686M05161 Tight junction protein ZO-1 yes no 3 0.0037299 57.227 1 1.3576 1.921 NaN 1 Median 1.3576 1.921 NaN 1 0 Median NaN NaN NaN 0 0 Median 1798200 815750 982450 1798200 815750 982450 0 0 0 561 371 574 2152 3167 3167 0 AIQGGTSHHLGQNFSK DYTTTIEAFISASGRAIQGGTSHHLGQNFS IQGGTSHHLGQNFSKMFEIVFEDPKIPGEK R A I S K M 1 0 1 0 0 2 0 3 2 1 1 1 0 1 0 2 1 0 0 0 0 0 16 0 1680.8332 P07814;B4DP50 P07814 1235 1250 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2;3 1.8458E-06 92.65 4 2 2.4526 3.1395 87.924 5 Median 0.58734 0.73326 84.299 3 0 Median 2.7438 3.851 8.2312 2 0 Median 49893000 35778000 14115000 41274000 33701000 7572800 8619000 2076900 6542200 562 1242 575 2153;2154;2155;2156;2157;2158 3168;3169;3170;3171;3172;3173 3171 6 AIQPQAAQGPAAVQQK QQLLKLKQQAVQQQKAIQPQAAQGPAAVQQ IQPQAAQGPAAVQQKITAQQITTPGAQQKV K A I Q K I 5 0 0 0 0 5 0 1 0 1 0 1 0 0 2 0 0 0 0 1 0 0 16 0 1604.8635 Q96L91;A0A0A0MR70 Q96L91 2979 2994 EP400 E1A-binding protein p400 yes no 2 0.0043591 117.52 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 563 1692 576 2159 3174 3174 1 AIQTGEELFFDYR MMVNGDHRIGIFAKRAIQTGEELFFDYRYS KRAIQTGEELFFDYRYSQADALKYVGIERE R A I Y R Y 1 1 0 1 0 1 2 1 0 1 1 0 0 2 0 0 1 0 1 0 0 0 13 0 1587.7569 A0A090N8E9;Q15910;S4S3R8;Q75MP9;Q75MQ0;F2YMM1 A0A090N8E9 720 732 EZH2 Histone-lysine N-methyltransferase EZH2 yes no 2 3.2022E-09 135.66 3 2 0.70898 1.0427 10.826 3 Plateau 0.6213 0.85891 NaN 1 0 Median 0.72283 1.0357 0.95476 2 0 Median 31075000 17292000 13783000 5756700 2731200 3025500 25318000 14560000 10758000 564 381 577 2160;2161;2162;2163;2164 3175;3176;3177;3178;3179;3180 3178 6 AIRPQIDLK EDPQTSREIFNFVLKAIRPQIDLKRYAVPS FNFVLKAIRPQIDLKRYAVPSAGLRLFALH K A I L K R 1 1 0 1 0 1 0 0 0 2 1 1 0 0 1 0 0 0 0 0 0 0 9 1 1052.6342 P78527;B4DL41 P78527 255 263 PRKDC DNA-dependent protein kinase catalytic subunit yes no 3 0.031134 24.222 1 0.49134 0.64052 NaN 1 Median 0.49134 0.64052 NaN 1 0 Median NaN NaN NaN 0 0 Median 28006000 18093000 9913200 28006000 18093000 9913200 0 0 0 565 1427 578 2165 3181 3181 1 AISAANLHLR YETQTFSSKTEWRVRAISAANLHLRTNHIY EWRVRAISAANLHLRTNHIYVSSDDIKETG R A I L R T 3 1 1 0 0 0 0 0 1 1 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1064.6091 Q6P2Q9;B4DK16;Q53GM6 Q6P2Q9 2077 2086 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 0.00024641 116.37 3 1 0.59943 0.79938 41.998 4 Median 0.58663 0.78073 3.6573 3 0 Median 1.2984 1.8181 NaN 1 0 Median 88903000 51683000 37220000 80442000 47903000 32540000 8460800 3780400 4680400 566 1592 579 2166;2167;2168;2169 3182;3183;3184;3185;3186;3187 3182 6 AISGVHTVR GTIGHVAHGKSTVVKAISGVHTVRFKNELE KSTVVKAISGVHTVRFKNELERNITIKLGY K A I V R F 1 1 0 0 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 2 0 0 9 0 938.52976 P41091;Q2VIR3;F8W810;H7BZU1 P41091 60 68 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 3 0.00051884 109.48 2 0.61112 0.852 NaN 1 Median 0.61112 0.852 NaN 1 0 Median NaN NaN NaN 0 0 Median 6886000 4874200 2011800 6886000 4874200 2011800 0 0 0 567 1333 580 2170;2171 3188;3189 3188 2 AISSYFVSTMSSSIK RNGFPKQTAAQLILKAISSYFVSTMSSSIK AISSYFVSTMSSSIKTVYFVLFDSESIGIY K A I I K T 1 0 0 0 0 0 0 0 0 2 0 1 1 1 0 6 1 0 1 1 0 0 15 0 1606.7913 O75367;Q59FH0;B4DJC3 O75367 333 347 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2 1.4121E-14 153.54 11 4 0.82153 1.0673 9.3802 15 Median 0.82658 1.0673 4.7741 11 0 Median 0.63788 0.98908 17.355 4 0 Median 1091700000 644220000 447490000 514260000 279070000 235200000 577450000 365160000 212300000 568 1198 581;582 2172;2173;2174;2175;2176;2177;2178;2179;2180;2181;2182;2183;2184;2185;2186 3190;3191;3192;3193;3194;3195;3196;3197;3198;3199;3200;3201;3202;3203;3204;3205;3206;3207;3208;3209;3210;3211;3212;3213;3214;3215;3216 3208 436 27 AISVHSTPEGCSSACK KIDVHRKENAGAAEKAISVHSTPEGCSSAC ISVHSTPEGCSSACKMILEIMHKEAKDTKT K A I C K M 2 0 0 0 2 0 1 1 1 1 0 1 0 0 1 4 1 0 0 1 0 0 16 0 1689.7451 Q9NZI8;D3DTW3 Q9NZI8 243 258 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 3 0.048395 38.661 1 0.75544 0.94648 NaN 1 Median 0.75544 0.94648 NaN 1 0 Median NaN NaN NaN 0 0 Median 3851000 1607900 2243100 3851000 1607900 2243100 0 0 0 569 1772 583 2187 3217 3217 1 AITAMGFK NLSFQDMNLSRPLLKAITAMGFKQPTPIQK LSRPLLKAITAMGFKQPTPIQKACIPVGLL K A I F K Q 2 0 0 0 0 0 0 1 0 1 0 1 1 1 0 0 1 0 0 0 0 0 8 0 837.44186 B7Z6D5;B3GQE6;Q96GQ7;A0A087X059 B7Z6D5 201 208 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 0.025914 42.914 1 0.48115 0.7152 NaN 1 Median NaN NaN NaN 0 0 Median 0.48115 0.7152 NaN 1 0 Median 11159000 7590900 3568300 0 0 0 11159000 7590900 3568300 570 750 584 2188 3218 3218 1 AITFFTEDDKPLLR IHRIGRTGRAGNKGKAITFFTEDDKPLLRS KAITFFTEDDKPLLRSVANVIQQAGCPVPE K A I L R S 1 1 0 2 0 0 1 0 0 1 2 1 0 2 1 0 2 0 0 0 0 0 14 1 1664.8774 Q9Y2R4;B3KM65;A0A087X121 Q9Y2R4 512 525 DDX52 Probable ATP-dependent RNA helicase DDX52 yes no 3 0.0047026 68.171 1 2 0.77912 1.1159 8.5067 3 Median 0.77912 1.043 NaN 1 0 Median 0.77639 1.174 7.1783 2 0 Median 12510000 6553000 5957100 2804900 1194700 1610200 9705300 5358300 4347000 571 1807 585 2189;2190;2191 3219;3220;3221;3222 3219 4 AITFVTQYDVELFQR IHRVGRTARAGRSGKAITFVTQYDVELFQR AITFVTQYDVELFQRIEHLIGKKLPGFPTQ K A I Q R I 1 1 0 1 0 2 1 0 0 1 1 0 0 2 0 0 2 0 1 2 0 0 15 0 1828.9359 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;Q7Z4B1 Q53GJ1 356 370 hCG_27698;DDX47;E4-DBP;MST162 Probable ATP-dependent RNA helicase DDX47 yes no 2 2.1387E-50 225.79 4 0.88073 1.1787 4.2453 4 Median 0.88073 1.1787 4.2453 4 0 Median NaN NaN NaN 0 0 Median 47825000 26058000 21767000 47825000 26058000 21767000 0 0 0 572 249 586 2192;2193;2194;2195 3223;3224;3225;3226;3227;3228;3229;3230;3231 3226 9 AITGASLADIMAK EIQKKRTRRAVKFQRAITGASLADIMAKRN QRAITGASLADIMAKRNQKPEVRKAQREQA R A I A K R 4 0 0 1 0 0 0 1 0 2 1 1 1 0 0 1 1 0 0 0 0 0 13 0 1260.6748 C9JXB8;C9JNW5;V9HW01;P83731 C9JXB8 81 93 RPL24;HEL-S-310 60S ribosomal protein L24 yes no 2 1.4248E-10 152.04 11 6 1.0027 1.2887 23.46 17 Median 1.0269 1.3239 6.6037 11 0 Median 0.71565 1.1317 29.548 6 0 Median 2863500000 1781400000 1082100000 942110000 470060000 472060000 1921400000 1311300000 610090000 573 942 587;588 2196;2197;2198;2199;2200;2201;2202;2203;2204;2205;2206;2207;2208;2209;2210;2211;2212 3232;3233;3234;3235;3236;3237;3238;3239;3240;3241;3242;3243;3244;3245;3246;3247;3248;3249;3250;3251;3252;3253;3254;3255;3256;3257;3258;3259;3260;3261;3262;3263;3264;3265;3266;3267 3252 319 36 AITIAGIPQSIIECVK QVQVAGDMLPNSTERAITIAGIPQSIIECV ITIAGIPQSIIECVKQICVVMLETLSQSPP R A I V K Q 2 0 0 0 1 1 1 1 0 5 0 1 0 0 1 1 1 0 0 1 0 0 16 0 1711.9542 Q15366;B4DLC0;F8VXH9;F8VRH0;H3BRU6;F8VZX2;B4DRD7 Q15366 145 160 PCBP2 Poly(rC)-binding protein 2 no no 2 1.7049E-24 160.86 4 1 0.34309 0.43059 4.4583 4 Median 0.34309 0.43059 4.4583 4 0 Median NaN NaN NaN 0 0 Median 179120000 114850000 64265000 155630000 114850000 40779000 23486000 0 23486000 574 1510;1064 589 2213;2214;2215;2216;2217 3268;3269;3270;3271;3272;3273;3274;3275 3274 8 AITIAGVPQSVTECVK QVQVAGDMLPNSTERAITIAGVPQSVTECV ITIAGVPQSVTECVKQICLVMLETLSQSPQ R A I V K Q 2 0 0 0 1 1 1 1 0 2 0 1 0 0 1 1 2 0 0 3 0 0 16 0 1671.8866 Q53SS8;Q15365 Q53SS8 145 160 PCBP1 Poly(rC)-binding protein 1 yes no 2 3.9692E-10 132.79 4 0.30775 0.36767 4.5488 4 Linear 0.30775 0.36767 4.5488 4 0 Linear NaN NaN NaN 0 0 Median 99732000 74881000 24851000 99732000 74881000 24851000 0 0 0 575 1509 590 2218;2219;2220;2221 3276;3277;3278;3279;3280;3281;3282;3283 3277 8 AIVAESLNNTSIK VELNASDTRSKSSLKAIVAESLNNTSIKGF LKAIVAESLNNTSIKGFYSNGAASSVSTKH K A I I K G 2 0 2 0 0 0 1 0 0 2 1 1 0 0 0 2 1 0 0 1 0 0 13 0 1358.7405 P35251;H0Y8U4 P35251 688 700 RFC1 Replication factor C subunit 1 yes no 2 2.0833E-05 128.03 2 2 0.83148 1.1249 34.325 4 Median 1.2338 1.5881 17.206 2 0 Median 0.61723 0.89891 0.15765 2 0 Median 25252000 12812000 12441000 12824000 5613800 7210400 12428000 7197900 5230400 576 1318 591 2222;2223;2224;2225 3284;3285;3286;3287 3285 4 AIVAIENPADVSVISSR INLKRTWEKLLLAARAIVAIENPADVSVIS VAIENPADVSVISSRNTGQRAVLKFAAATG R A I S R N 3 1 1 1 0 0 1 0 0 3 0 0 0 0 1 3 0 0 0 3 0 0 17 0 1739.9418 C9J9K3;A0A024R2P0;A0A0C4DG17;P08865;A0A024R7P5;Q96RS2;F8WD59 C9J9K3 64 80 RPSA;LOC388524 40S ribosomal protein SA yes no 2 4.0989E-55 201.09 4 2 0.8462 1.1631 64.895 6 Median 0.82208 1.1406 2.287 4 0 Median 2.4547 4.028 0.83238 2 0 Median 891220000 418180000 473040000 629990000 346400000 283580000 261230000 71781000 189450000 577 90 592 2226;2227;2228;2229;2230;2231 3288;3289;3290;3291;3292;3293;3294;3295;3296;3297;3298;3299 3295 12 AIVFVVDSAAFQR SLRLQFLERFKSSARAIVFVVDSAAFQREV ARAIVFVVDSAAFQREVKDVAEFLYQVLID R A I Q R E 3 1 0 1 0 1 0 0 0 1 0 0 0 2 0 1 0 0 0 3 0 0 13 0 1421.7667 Q549N5;Q9Y5M8;H7C4H2 Q549N5 138 150 SRPRB Signal recognition particle receptor subunit beta yes no 2 4.4736E-08 98.943 1 0.39725 0.54091 NaN 1 Median 0.39725 0.54091 NaN 1 0 Median NaN NaN NaN 0 0 Median 12942000 8999500 3942000 12942000 8999500 3942000 0 0 0 578 1545 593 2232 3300;3301 3301 2 AIVHAVGQELQVTGPFNLQLIAK TPPQDITAKTLERIKAIVHAVGQELQVTGP ELQVTGPFNLQLIAKDDQLKVIECNVRVSR K A I A K D 3 0 1 0 0 3 1 2 1 2 3 1 0 1 1 0 1 0 0 3 0 0 23 0 2445.3744 Q53SY7;F8VPD4;P27708 Q53SY7 1110 1132 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 3 0.0087734 22.996 1 0.39036 0.49442 NaN 1 Median 0.39036 0.49442 NaN 1 0 Median NaN NaN NaN 0 0 Median 10523000 8039800 2482900 10523000 8039800 2482900 0 0 0 579 1060 594 2233 3302 3302 1 AIVICPTDEDLK AQRRKMRPFEGFQRKAIVICPTDEDLKDRT QRKAIVICPTDEDLKDRTIKRTDEEGKDVP K A I L K D 1 0 0 2 1 0 1 0 0 2 1 1 0 0 1 0 1 0 0 1 0 0 12 0 1372.6908 M0R3F1;A8K3W4;A0A024R0J9;A0A0A0MRA5;B7Z4B8;A8K6U7;Q9BUJ2;A8K5K0;B3KM60 M0R3F1 377 388 HNRNPUL1;HNRPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 2 4.0253E-05 102.61 2 1 0.60183 0.75925 42.024 3 Median 0.53988 0.68511 14.531 2 0 Median 1.0364 1.3876 NaN 1 0 Median 25017000 15456000 9561000 21472000 13660000 7812000 3545400 1796400 1749000 580 39 595 2234;2235;2236 3303;3304;3305;3306;3307 3305 5 AIVLAAIFR GQRLAHISTDPRLAKAIVLAAIFRCLHPLL DPRLAKAIVLAAIFRCLHPLLVVVSCLTRD K A I F R C 3 1 0 0 0 0 0 0 0 2 1 0 0 1 0 0 0 0 0 1 0 0 9 0 972.61204 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 858 866 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.0059549 94.407 3 0.79979 1.0743 18.33 3 Plateau 0.79979 1.0743 18.33 3 0 Plateau NaN NaN NaN 0 0 Median 14816000 8408500 6407500 14816000 8408500 6407500 0 0 0 581 93 596 2237;2238;2239 3308;3309;3310;3311 3311 4 AIVPLEAR KEAAMEAEIKAARERAIVPLEARMKQFKDM IKAARERAIVPLEARMKQFKDMLLERGVSA R A I A R M 2 1 0 0 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 8 0 867.5178 G3V220;O14776 G3V220 655 662 TCERG1 Transcription elongation regulator 1 yes no 2 0.018127 58.917 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 582 1079 597 2240 3312 3312 1 AIVPQALSGIIK CDKRLWTKIDLSRCKAIVPQALSGIIKRQP RCKAIVPQALSGIIKRQPVSLDLSWTNISK K A I I K R 2 0 0 0 0 1 0 1 0 3 1 1 0 0 1 1 0 0 0 1 0 0 12 0 1208.7493 I3VM54;I3VM53;Q9Y2K7 I3VM54 923 934 KDM2A Lysine-specific demethylase 2A yes no 2 0.0012295 75.509 1 2 0.3845 0.53586 73.041 2 Median 0.70646 0.89816 NaN 1 0 Median 0.20927 0.3197 NaN 1 0 Median 51133000 38903000 12230000 12887000 7771500 5115600 38246000 31132000 7114400 583 1128 598 2241;2242;2243 3313;3314;3315 3314 3 AIVSSGTLGDR SKTNSQKGASSTWMKAIVSSGTLGDRMAAM TWMKAIVSSGTLGDRMAAMILLIQDDAVHT K A I D R M 1 1 0 1 0 0 0 2 0 1 1 0 0 0 0 2 1 0 0 1 0 0 11 0 1074.5669 B2R5U7;Q03701 B2R5U7 237 247 CEBPZ CCAAT/enhancer-binding protein zeta no no 2 0.0057574 54.416 1 0.70771 0.95129 NaN 1 Median 0.70771 0.95129 NaN 1 0 Median NaN NaN NaN 0 0 Median 15422000 8923100 6498600 15422000 8923100 6498600 0 0 0 584 693;1441 599 2244 3316 3316 1 AIYAYALQVFPSK DADSCVAHNALECARAIYAYALQVFPSKKS ARAIYAYALQVFPSKKSVWLRAAYFEKNHG R A I S K K 3 0 0 0 0 1 0 0 0 1 1 1 0 1 1 1 0 0 2 1 0 0 13 0 1469.7919 O94906 O94906 561 573 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.00088953 74.962 2 0.66275 0.84187 14.042 2 Median 0.66275 0.84187 14.042 2 0 Median NaN NaN NaN 0 0 Median 10591000 6426400 4164300 10591000 6426400 4164300 0 0 0 585 1212 600 2245;2246 3317;3318 3318 2 AIYDTPCIQAESEK DQHEGSYLSICKHYRAIYDTPCIQAESEKW RAIYDTPCIQAESEKWQQALKSVVLYVILA R A I E K W 2 0 0 1 1 1 2 0 0 2 0 1 0 0 1 1 1 0 1 0 0 0 14 0 1623.745 A0A0S2Z489;O00232;A0A0S2Z476 A0A0S2Z489 249 262 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 2 1.2595E-05 119.03 3 0.33093 0.43769 NaN 1 Median 0.33093 0.43769 NaN 1 0 Median NaN NaN NaN 0 0 Median 7358800 7047700 311130 7358800 7047700 311130 0 0 0 586 461 601 2247;2248;2249 3319;3320;3321;3322 3320 4 AIYELAISQPR FAELETILGDIDRARAIYELAISQPRLDMP DRARAIYELAISQPRLDMPEVLWKSYIDFE R A I P R L 2 1 0 0 0 1 1 0 0 2 1 0 0 0 1 1 0 0 1 0 0 0 11 0 1259.6874 Q69YP1;Q5JY65;Q9BZJ0;Q8IXG0 Q69YP1 541 551 DKFZp762M013;CRNKL1;crn Crooked neck-like protein 1 yes no 2 0.015303 94.692 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 727240 727240 0 727240 727240 0 0 0 0 587 1559 602 2250 3323 3323 1 AIYEVLFR ______________________________ MPRDQLRAIYEVLFREGVMVAKKDRRPRSL R A I F R E 1 1 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 1 1 0 0 8 0 1009.5597 Q15149 Q15149 14 21 PLEC Plectin yes yes 2 0.045824 43.246 1 1.2481 1.6856 NaN 1 Median 1.2481 1.6856 NaN 1 0 Median NaN NaN NaN 0 0 Median 3682300 1613600 2068700 3682300 1613600 2068700 0 0 0 588 1507 603 2251 3324 3324 1 AIYFDGDFGQIVR LEGNFKGIVDLIEERAIYFDGDFGQIVRYG ERAIYFDGDFGQIVRYGEIPAELRAAATDH R A I V R Y 1 1 0 2 0 1 0 2 0 2 0 0 0 2 0 0 0 0 1 1 0 0 13 0 1499.7409 D3DNL3;F8WAU4;C9IZ01;E5KND7;E5KND5;Q96RP9 D3DNL3 222 234 GFM1 Elongation factor G, mitochondrial yes no 2 0.020205 44.318 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1293800 1293800 0 1293800 1293800 0 0 0 0 589 933 604 2252 3325 3325 1 AKEEEGVPDEEGWVK FMEAYDQKIAEEEAKAKEEEGVPDEEGWVK AKEEEGVPDEEGWVKVTRRGRRPVLPRTEA K A K V K V 1 0 0 1 0 0 5 2 0 0 0 2 0 0 1 0 0 1 0 2 0 0 15 1 1700.7893 Q9Y3A4;Q9NSQ0 Q9Y3A4 191 205 RRP7A;RRP7BP Ribosomal RNA-processing protein 7 homolog A;Putative ribosomal RNA-processing protein 7 homolog B yes no 3 0.036778 14.959 1 0.65506 1.002 NaN 1 Median NaN NaN NaN 0 0 Median 0.65506 1.002 NaN 1 0 Median 5303400 2406800 2896500 0 0 0 5303400 2406800 2896500 590 1815 605 2253 3326 3326 1 AKEELIFHCGFR NMVVRRDPGNTEPVKAKEELIFHCGFRRFR PVKAKEELIFHCGFRRFRASPLFSQHTAAD K A K F R R 1 1 0 0 1 0 2 1 1 1 1 1 0 2 0 0 0 0 0 0 0 0 12 1 1505.7449 Q2NL82 Q2NL82 610 621 TSR1 Pre-rRNA-processing protein TSR1 homolog yes yes 3 0.004108 74.962 1 0.77483 1.0397 NaN 1 Median 0.77483 1.0397 NaN 1 0 Median NaN NaN NaN 0 0 Median 4211900 2247900 1964000 4211900 2247900 1964000 0 0 0 591 1529 606 2254 3327;3328 3328 2 AKFENLCK LPEDEEEKKKMEESKAKFENLCKLMKEILD KKMEESKAKFENLCKLMKEILDKKVEKVTI K A K C K L 1 0 1 0 1 0 1 0 0 0 1 2 0 1 0 0 0 0 0 0 0 0 8 1 1008.5063 A0A024RD80;P08238;B4DMA2;B4DGL0;Q9H6X9;A8K3W9;Q58FF8 A0A024RD80 558 565 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 2 0.0009756 139.97 2 0.45311 0.55408 NaN 1 Median 0.45311 0.55408 NaN 1 0 Median NaN NaN NaN 0 0 Median 49353000 21578000 27775000 49353000 21578000 27775000 0 0 0 592 312;598;1551 607 2255;2256 3329;3330;3331 3329 3 AKLEAAIAEAEERGELALK IQRLQAEIDNIKNQRAKLEAAIAEAEERGE AAIAEAEERGELALKDARAKQEELEAALQR R A K L K D 6 1 0 0 0 0 5 1 0 1 3 2 0 0 0 0 0 0 0 0 0 0 19 2 2011.095 CON__P08729;Q96GE1;CON__Q3KNV1;P08729;B3KY79 CON__Q3KNV1 330 348 KRT7 Keratin, type II cytoskeletal 7 no no 3 0.00061184 78.166 1 0.20009 0.25241 NaN 1 Median 0.20009 0.25241 NaN 1 0 Median NaN NaN NaN 0 0 Median 12520000 9388100 3131400 12520000 9388100 3131400 0 0 0 + 593 968;957 608 2257 3332 3332 1 AKLEQLFQDEVAK KDSLLQRERFIEQEKAKLEQLFQDEVAKAQ EKAKLEQLFQDEVAKAQQLREEQQRQQQQM K A K A K A 2 0 0 1 0 2 2 0 0 0 2 2 0 1 0 0 0 0 0 1 0 0 13 1 1517.809 Q15149;D3DWL0;H0YDN1 Q15149 2651 2663 PLEC;PLEC1 Plectin yes no 2 0.00052314 115.57 2 1.3569 1.6203 NaN 1 Median 1.3569 1.6203 NaN 1 0 Median NaN NaN NaN 0 0 Median 5883400 1193100 4690300 5883400 1193100 4690300 0 0 0 594 1507 609 2258;2259 3333;3334 3333 2 AKPTGARPSALDR KVRQSLQQQHHKEAKAKPTGARPSALDRFV AKAKPTGARPSALDRFVR____________ K A K D R F 3 2 0 1 0 0 0 1 0 0 1 1 0 0 2 1 1 0 0 0 0 0 13 2 1338.7368 B0UZZ8;B4DNI0;O15213;B4DP15;A8K9A1;A8K806 B0UZZ8 595 607 C6orf11;WDR46 WD repeat-containing protein 46 yes no 3 0.0064574 40.725 1 0.61607 0.97569 NaN 1 Median NaN NaN NaN 0 0 Median 0.61607 0.97569 NaN 1 0 Median 8639400 5308900 3330600 0 0 0 8639400 5308900 3330600 595 668 610 2260 3335;3336 3336 2 AKPYHLSTSSVFR GKILPRVHRKLAIERAKPYHLSTSSVFRLV ERAKPYHLSTSSVFRLVSRPKPLSAVPKQV R A K F R L 1 1 0 0 0 0 0 0 1 0 1 1 0 1 1 3 1 0 1 1 0 0 13 1 1491.7834 Q8WYP5 Q8WYP5 1016 1028 AHCTF1 Protein ELYS yes yes 3 0.0025909 50.659 3 0.79188 1.043 7.649 3 Median 0.79188 1.043 7.649 3 0 Median NaN NaN NaN 0 0 Median 90501000 47850000 42652000 90501000 47850000 42652000 0 0 0 596 1670 611 2261;2262;2263 3337;3338;3339 3338 3 AKQEELEAALQR AEAEERGELALKDARAKQEELEAALQRGKQ DARAKQEELEAALQRGKQDMARQLREYQEL R A K Q R G 3 1 0 0 0 2 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1384.731 CON__P08729;Q96GE1;CON__Q3KNV1;P08729;B3KY79 CON__Q3KNV1 352 363 KRT7 Keratin, type II cytoskeletal 7 no no 2;3 2.8949E-11 160.91 4 4 1.2611 1.9298 90.184 7 Median 0.33686 0.44072 13.959 3 0 Plateau 1.3187 2.0261 4.2609 4 0 Median 108250000 71491000 36755000 76927000 58209000 18718000 31319000 13282000 18037000 + 597 968;957 612 2264;2265;2266;2267;2268;2269;2270;2271 3340;3341;3342;3343;3344;3345;3346;3347;3348;3349;3350;3351 3341 12 AKVDEFPLCGHMVSDEYEQLSSEALEAAR VPDAKIRIFDLGRKKAKVDEFPLCGHMVSD DEYEQLSSEALEAARICANKYMVKSCGKDG K A K A R I 4 1 0 2 1 1 5 1 1 0 3 1 1 1 1 3 0 0 1 2 0 0 29 1 3280.5016 P27635;X1WI28;X5D2T3;B8A6G2;X5D2W5;A6QRI9 P27635 41 69 RPL10 60S ribosomal protein L10 yes no 4 1.3816E-11 63.291 4 0.68154 0.90412 6.8897 4 Median 0.68154 0.90412 6.8897 4 0 Median NaN NaN NaN 0 0 Median 129060000 71930000 57127000 129060000 71930000 57127000 0 0 0 598 1301 613;614 2272;2273;2274;2275 3352;3353;3354;3355;3356;3357;3358 3355 547 7 ALAAAGYDVEK ASKERSGVSLAALKKALAAAGYDVEKNNSR ALKKALAAAGYDVEKNNSRIKLGLKSLVSK K A L E K N 4 0 0 1 0 0 1 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 11 0 1106.5608 B2R984;A3R0T8;P10412;Q4VB24;A3R0T7;P16402;Q02539;A1L407;P16403 P16403 65 75 HIST1H1E;HIST1H1D;HIST1H1A;HIST1H1T;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.1;Histone H1.2 no no 1;2 6.7013E-05 114.86 18 6 0.8509 1.1168 20.548 8 Median 0.8509 1.1168 19.788 6 0 Median 0.80306 1.0954 31.582 2 0 Median 9309000000 8896500000 412550000 6317000000 5908700000 408370000 2992000000 2987800000 4180400 599 542;1274 615 2276;2277;2278;2279;2280;2281;2282;2283;2284;2285;2286;2287;2288;2289;2290;2291;2292;2293;2294;2295;2296;2297;2298;2299 3359;3360;3361;3362;3363;3364;3365;3366;3367;3368;3369;3370;3371;3372;3373;3374;3375;3376;3377;3378;3379;3380;3381;3382;3383;3384;3385;3386;3387;3388;3389;3390;3391;3392;3393 3369 34 ALAAAGYDVEKNNSR ASKERSGVSLAALKKALAAAGYDVEKNNSR ALAAAGYDVEKNNSRIKLGLKSLVSKGTLV K A L S R I 4 1 2 1 0 0 1 1 0 0 1 1 0 0 0 1 0 0 1 1 0 0 15 1 1577.7798 B2R984;A3R0T8;P10412;Q4VB24;A3R0T7;P16402;Q02539;A1L407;P16403 P16403 65 79 HIST1H1E;HIST1H1D;HIST1H1A;HIST1H1T;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.1;Histone H1.2 no no 2 0.020478 39.581 1 1.1487 1.6481 NaN 1 Median NaN NaN NaN 0 0 Median 1.1487 1.6481 NaN 1 0 Median 3093900 1426800 1667100 0 0 0 3093900 1426800 1667100 600 542;1274 616 2300 3394;3395 3394 2 ALAAFLK PGVTVKDVNQQEFVRALAAFLKKSGKLKVP VNQQEFVRALAAFLKKSGKLKVPEWVDTVK R A L L K K 3 0 0 0 0 0 0 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 7 0 732.45341 B0ZBD0;Q8WVX7;P39019;M0R2L9;M0QXK4;M0QYF7;M0R140 B0ZBD0 17 23 RPS19 40S ribosomal protein S19 yes no 2 0.027093 66.994 2 2 0.99248 1.1586 5.5925 4 Linear 0.92678 1.188 6.307 2 0 Median 0.72768 1.1345 5.7245 2 0 Median 259500000 138060000 121440000 203830000 107060000 96771000 55673000 31006000 24667000 601 669 617 2301;2302;2303;2304 3396;3397;3398;3399;3400;3401;3402 3399 7 ALAAGGYDVEK ASKERNGLSLAALKKALAAGGYDVEKNNSR ALKKALAAGGYDVEKNNSRIKLGLKSLVSK K A L E K N 3 0 0 1 0 0 1 2 0 0 1 1 0 0 0 0 0 0 1 1 0 0 11 0 1092.5451 P16401 P16401 68 78 HIST1H1B Histone H1.5 yes yes 1;2 4.6793E-10 173.37 6 2 0.50145 0.77647 2.4282 3 Median 0.59923 0.77647 NaN 1 0 Median 0.49897 0.78139 3.3951 2 0 Median 10534000000 9470600000 1063500000 7606700000 7525200000 81522000 2927400000 1945400000 981970000 602 1273 618 2305;2306;2307;2308;2309;2310;2311;2312 3403;3404;3405;3406;3407;3408;3409;3410;3411;3412;3413;3414;3415;3416;3417;3418;3419;3420;3421;3422;3423;3424;3425 3403 23 ALAAGGYDVEKNNSR ASKERNGLSLAALKKALAAGGYDVEKNNSR ALAAGGYDVEKNNSRIKLGLKSLVSKGTLV K A L S R I 3 1 2 1 0 0 1 2 0 0 1 1 0 0 0 1 0 0 1 1 0 0 15 1 1563.7641 P16401 P16401 68 82 HIST1H1B Histone H1.5 yes yes 2 0.032741 47.062 2 0.48899 0.73117 NaN 1 Median NaN NaN NaN 0 0 Median 0.48899 0.73117 NaN 1 0 Median 6864200 5456400 1407800 0 0 0 6864200 5456400 1407800 603 1273 619 2313;2314 3426;3427 3427 2 ALADDDFLTVTGK SDIAITKDMFEEALRALADDDFLTVTGKTV LRALADDDFLTVTGKTVRLL__________ R A L G K T 2 0 0 3 0 0 0 1 0 0 2 1 0 1 0 0 2 0 0 1 0 0 13 0 1364.6824 B4DLA6;B3KMX0;A0A024R7U6;P33991;A4FS09 B4DLA6 806 818 MCM4 DNA replication licensing factor MCM4 yes no 2 0.012999 39.58 1 0.41873 0.53182 NaN 1 Median 0.41873 0.53182 NaN 1 0 Median NaN NaN NaN 0 0 Median 10152000 7035700 3116500 10152000 7035700 3116500 0 0 0 604 185 620 2315 3428 3428 1 ALADENEFVR KFTPYVGPIIPCILKALADENEFVRDTALR PCILKALADENEFVRDTALRAGQRVISMYA K A L V R D 2 1 1 1 0 0 2 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 10 0 1162.5619 E1NZA1;Q92616;A0A024RBS1 E1NZA1 1785 1794 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.016635 48.283 1 0.44704 0.61975 NaN 1 Median 0.44704 0.61975 NaN 1 0 Median NaN NaN NaN 0 0 Median 4334000 2506800 1827300 4334000 2506800 1827300 0 0 0 605 1000 621 2316 3429 3429 1 ALAESWNAAFLESSAK KDLHMERVISYEEGKALAESWNAAFLESSA LAESWNAAFLESSAKENQTAVDVFRRIILE K A L A K E 5 0 1 0 0 0 2 0 0 0 2 1 0 1 0 3 0 1 0 0 0 0 16 0 1693.8312 Q6NZ61;A8K005;A0A090N900;Q15382;C9J931 Q6NZ61 136 151 RHEB GTP-binding protein Rheb yes no 2 0.04576 32.478 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5317500 0 5317500 0 0 0 5317500 0 5317500 606 383 622 2317 3430 3430 1 ALAEVDVISLEQGK LLEKVPAELICLDPRALAEVDVISLEQGKK RALAEVDVISLEQGKKEQIERLGYDPQAKA R A L G K K 2 0 0 1 0 1 2 1 0 1 2 1 0 0 0 1 0 0 0 2 0 0 14 0 1470.793 B0UZZ8;B4DNI0;O15213;B4DP15;A8K9A1 B0UZZ8 520 533 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2 1.5746E-17 155.33 2 2 0.8501 1.2629 12.218 4 Median 0.91979 1.1592 17.49 2 0 Median 0.84783 1.277 6.9438 2 0 Median 50835000 25616000 25219000 12041000 6580700 5460700 38794000 19036000 19758000 607 668 623 2318;2319;2320;2321 3431;3432;3433;3434;3435;3436;3437 3432 7 ALAEVDVISLEQGKK LLEKVPAELICLDPRALAEVDVISLEQGKK ALAEVDVISLEQGKKEQIERLGYDPQAKAP R A L K K E 2 0 0 1 0 1 2 1 0 1 2 2 0 0 0 1 0 0 0 2 0 0 15 1 1598.8879 B0UZZ8;B4DNI0;O15213;B4DP15;A8K9A1 B0UZZ8 520 534 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2;3 4.526E-10 146.16 7 4 0.81239 1.1055 9.2298 10 Median 0.95068 1.1691 10.562 6 0 Median 0.66716 1.0723 7.2797 4 0 Median 227700000 119730000 107970000 153540000 77451000 76084000 74167000 42276000 31891000 608 668 624 2322;2323;2324;2325;2326;2327;2328;2329;2330;2331;2332 3438;3439;3440;3441;3442;3443;3444;3445;3446;3447;3448;3449;3450;3451;3452;3453;3454;3455;3456 3438 19 ALAGGVTLGLAIEPK SLELELTEVKESLKKALAGGVTLGLAIEPK ALAGGVTLGLAIEPKSGTSSPQSPVFRHRT K A L P K S 3 0 0 0 0 0 1 3 0 1 3 1 0 0 1 0 1 0 0 1 0 0 15 0 1408.829 Q8N556;Q6ZRV0 Q8N556 646 660 AFAP1 Actin filament-associated protein 1 yes no 2 0.012282 78.903 2 0.53258 0.64868 NaN 1 Median 0.53258 0.64868 NaN 1 0 Median NaN NaN NaN 0 0 Median 4187300 2577300 1610000 4187300 2577300 1610000 0 0 0 609 1639 625 2333;2334 3457;3458 3458 2 ALAILSQPTPSLVVDHER RRSQVEQQQLITVEKALAILSQPTPSLVVD ILSQPTPSLVVDHERLKNLLKTVVKKSQNY K A L E R L 2 1 0 1 0 1 1 0 1 1 3 0 0 0 2 2 1 0 0 2 0 0 18 0 1945.0633 A0A024R9G7;Q6PL18;A0A0B4J211 A0A024R9G7 1315 1332 ATAD2 ATPase family AAA domain-containing protein 2 yes no 3 0.00083615 90.714 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1758200 0 1758200 1758200 0 1758200 0 0 0 610 221 626 2335 3459 3459 1 ALALNCFAPINDQEGAEAK TAEQSCDQKLTNTNRALALNCFAPINDQEG NCFAPINDQEGAEAKDWRSGKPVRVVRNVK R A L A K D 5 0 2 1 1 1 2 1 0 1 2 1 0 1 1 0 0 0 0 0 0 0 19 0 2030.9731 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9;B4E0F9 A0A087WVR3 520 538 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 0.00015779 105 4 1.1528 1.4646 10.46 2 Median 1.1528 1.4646 10.46 2 0 Median NaN NaN NaN 0 0 Median 17748000 6021600 11726000 17748000 6021600 11726000 0 0 0 611 337 627 2336;2337;2338;2339 3460;3461;3462;3463;3464;3465 3461 6 ALAPLLLAFVTKPNSALESCSFAR LMALNHMVQQDYFPKALAPLLLAFVTKPNS VTKPNSALESCSFARHSLLQTLYKV_____ K A L A R H 5 1 1 0 1 0 1 0 0 0 5 1 0 2 2 3 1 0 0 1 0 0 24 1 2575.3832 B4DY16;A0A024R1U0;P46060;B4E0U0;Q9BSK3;Q8WUS7 B4DY16 499 522 RANGAP1 Ran GTPase-activating protein 1 yes no 3 0.0064635 25.935 1 0.53914 0.68348 NaN 1 Median 0.53914 0.68348 NaN 1 0 Median NaN NaN NaN 0 0 Median 4974500 2987500 1987000 4974500 2987500 1987000 0 0 0 612 70 628 2340 3466;3467 3466 2 ALAQALSR NNSSIFKISLKHNNRALAQALSREKENSRR SLKHNNRALAQALSREKENSRRITTEKMLL R A L S R E 3 1 0 0 0 1 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 8 0 828.48175 Q562F6;B7Z7S9;C9JW92 Q562F6 60 67 SGOL2 Shugoshin-like 2 yes no 2 0.036599 51.066 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 613 1546 629 2341 3468 3468 1 ALASNTSFFSGCSPIEEEAH TEYQENKAPGKKKKRALASNTSFFSGCSPI TSFFSGCSPIEEEAH_______________ R A L A H - 3 0 1 0 1 0 3 1 1 1 1 0 0 2 1 4 1 0 0 0 0 0 20 0 2152.9371 Q59HG1;O95239;B4DYE2;Q2VIQ3;B3KNC0 Q59HG1 1216 1235 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 8.3288E-07 70.488 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2127400 0 0 2127400 0 0 0 0 0 614 1216 630 2342 3469 3469 1 ALATHPGISFYEEPR FPLPLEPCTQEFLWRALATHPGISFYEEPR ALATHPGISFYEEPRERPDLQLQDRYEEID R A L P R E 2 1 0 0 0 0 2 1 1 1 1 0 0 1 2 1 1 0 1 0 0 0 15 0 1686.8366 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 50 64 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 3 0.0024884 58.817 2 2 0.7787 1.0924 46.17 4 Median 0.50113 0.67544 34.917 2 0 Median 0.97263 1.3868 0.65868 2 0 Median 39595000 23043000 16552000 23382000 14918000 8464500 16213000 8125600 8087300 615 1457 631 2343;2344;2345;2346 3470;3471;3472;3473;3474 3474 5 ALAVGGLGSIIR PTENSSAVLLQWHEKALAVGGLGSIIRVLT HEKALAVGGLGSIIRVLTARKTV_______ K A L I R V 2 1 0 0 0 0 0 3 0 2 2 0 0 0 0 1 0 0 0 1 0 0 12 0 1125.687 B3KPC7;A0A024R897;Q9BPX5 B3KPC7 134 145 ARPC5L Actin-related protein 2/3 complex subunit 5;Actin-related protein 2/3 complex subunit 5-like protein yes no 2 0.013386 71.221 2 1.3148 1.7835 13.253 2 Median 1.3148 1.7835 13.253 2 0 Median NaN NaN NaN 0 0 Median 12026000 4938200 7087900 12026000 4938200 7087900 0 0 0 616 193 632 2347;2348 3475;3476 3476 1 ALCAEADRLQQSHPLSATQIQVK EGLERDLAALEDKVKALCAEADRLQQSHPL LQQSHPLSATQIQVKREELITNWEQIRTLA K A L V K R 4 1 0 1 1 4 1 0 1 1 3 1 0 0 1 2 1 0 0 1 0 0 23 1 2563.3177 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 313 335 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 3;4 0.0014671 48.567 3 0.97622 1.3259 17.375 3 Median 0.97622 1.3259 17.375 3 0 Median NaN NaN NaN 0 0 Median 32169000 16574000 15595000 32169000 16574000 15595000 0 0 0 617 1476 633 2349;2350;2351 3477;3478;3479 3477 3 ALDCSSSIR DQFLVVARAVGTFARALDCSSSIRQPSLHM VGTFARALDCSSSIRQPSLHMSAAAASRDI R A L I R Q 1 1 0 1 1 0 0 0 0 1 1 0 0 0 0 3 0 0 0 0 0 0 9 0 1007.4706 A0A024R534;O94776 A0A024R534 206 214 MTA2 Metastasis-associated protein MTA2 yes no 2 0.00019138 79.474 3 1 1.0662 1.568 NaN 1 Median NaN NaN NaN 0 0 Median 1.0662 1.568 NaN 1 0 Median 7946800 3773700 4173200 0 0 0 7946800 3773700 4173200 618 133 634 2352;2353;2354;2355 3480;3481;3482;3483 3480 4 ALDEGDIALLK QRKTKEDEKDDKPIRALDEGDIALLKTYGQ KPIRALDEGDIALLKTYGQSTYSRQIKQVE R A L L K T 2 0 0 2 0 0 1 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1156.634 A0A140VK70;P35998;C9JLS9 A0A140VK70 24 34 PSMC2 26S protease regulatory subunit 7 yes no 2 0.0029336 97.565 4 2 0.49306 0.62702 16.987 2 Median 0.49306 0.62702 16.987 2 0 Median NaN NaN NaN 0 0 Median 33166000 17132000 16034000 21663000 17132000 4531100 11503000 0 11503000 619 510 635 2356;2357;2358;2359;2360;2361 3484;3485;3486;3487;3488;3489 3487 6 ALDELMDGDIIVFQK NLTERIQDYDVSLDKALDELMDGDIIVFQK ALDELMDGDIIVFQKDDPENDNSELPTAKE K A L Q K D 1 0 0 3 0 1 1 1 0 2 2 1 1 1 0 0 0 0 0 1 0 0 15 0 1705.8597 Q6U8A4;Q93009;B7ZAX6;B7Z855;H3BND8;B7Z7T5 Q6U8A4 766 780 USP7 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 7 yes no 2 0.00012379 59.198 2 0.77295 1.1676 52.425 2 Median NaN NaN NaN 0 0 Median 0.77295 1.1676 52.425 2 0 Median 31851000 16364000 15487000 0 0 0 31851000 16364000 15487000 620 1600 636 2362;2363 3490;3491 3491 722 2 ALDEPPYLTVGTDVSAK ______________________________ DEPPYLTVGTDVSAKYRGAFCEAKIKTAKR K A L A K Y 2 0 0 2 0 0 1 1 0 0 2 1 0 0 2 1 2 0 1 2 0 0 17 0 1774.8989 A0A024R3R1;Q4LE39;X6RCR8 A0A024R3R1 3 19 ARID4B AT-rich interactive domain-containing protein 4B yes no 2 0.0013078 55.452 1 6.1783 7.8335 NaN 1 Median 6.1783 7.8335 NaN 1 0 Median NaN NaN NaN 0 0 Median 11504000 1285300 10219000 11504000 1285300 10219000 0 0 0 621 105 637 2364 3492 3492 1 ALDLLNNK IRGLVGNPLPSVRRKALDLLNNKLQQNISW LPSVRRKALDLLNNKLQQNISWKKTIVTRF K A L N K L 1 0 2 1 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 0 899.50763 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8;Q8N7L7 B2RWN5 1619 1626 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.013728 66.799 1 1.4428 1.7619 NaN 1 Median 1.4428 1.7619 NaN 1 0 Median NaN NaN NaN 0 0 Median 21007000 6983000 14023000 21007000 6983000 14023000 0 0 0 622 748 638 2365 3493 3493 1 ALDQFVNFSEQK QCNTELKKYSHVNKKALDQFVNFSEQKEKL NKKALDQFVNFSEQKEKLIKRQEELDRGYK K A L Q K E 1 0 1 1 0 2 1 0 0 0 1 1 0 2 0 1 0 0 0 1 0 0 12 0 1424.6936 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 986 997 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.0069381 47.844 2 0.82906 1.2346 6.8716 2 Median NaN NaN NaN 0 0 Median 0.82906 1.2346 6.8716 2 0 Median 16348000 8127000 8220500 0 0 0 16348000 8127000 8220500 623 663 639 2366;2367 3494;3495 3494 2 ALDQSDNDMSAVYR TPMAAAANEVYKRAKALDQSDNDMSAVYRA KALDQSDNDMSAVYRAYIH___________ K A L Y R A 2 1 1 3 0 1 0 0 0 0 1 0 1 0 0 2 0 0 1 1 0 0 14 0 1583.6886 K7EMM8;D3DUE6;Q49A26;D3DUE7 Q49A26 507 520 GLYR1;N-PAC Putative oxidoreductase GLYR1 no no 2 1.0617E-06 120.03 4 2 0.68801 1.0904 5.6682 3 Median 0.86592 1.1705 NaN 1 0 Median 0.66428 1.0682 2.9076 2 0 Median 102170000 57514000 44658000 8264900 1998900 6266000 93907000 55515000 38392000 624 982;1533 640;641 2368;2369;2370;2371;2372;2373 3496;3497;3498;3499;3500;3501;3502;3503;3504 3504 355 9 ALDTMNFDVIK GYAYVNFQQPADAERALDTMNFDVIKGKPI DAERALDTMNFDVIKGKPIRIMWSQRDPSL R A L I K G 1 0 1 2 0 0 0 0 0 1 1 1 1 1 0 0 1 0 0 1 0 0 11 0 1265.6326 A0A087WTT1;A0A024R9C1;P11940;A0A024R9E2;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;B3KT93;H0YBN4;E5RGH3;E5RJB9;E5RH24;B1ANR0;Q6IQ30;Q13310;B1ANR1;H0YEQ8 B1ANR0 68 78 PABPC1;PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 no no 2 0.00071589 70.908 1 1 2.1177 3.2011 NaN 1 Median NaN NaN NaN 0 0 Median 2.1177 3.2011 NaN 1 0 Median 18115000 8364100 9751300 2893400 2893400 0 15222000 5470700 9751300 625 676;217 642;643 2374;2375 3505;3506;3507 3507 93 3 ALEAVFGK GKLFIGGLNTETNEKALEAVFGKYGRIVEV NTETNEKALEAVFGKYGRIVEVLLMKDRET K A L G K Y 2 0 0 0 0 0 1 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 8 0 833.4647 H0Y6E7;H3BT71;P38159;H3BR27;H3BNC1 H0Y6E7 25 32 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 1;2 0.0069459 99.375 5 2 0.75689 0.96149 44.207 7 Median 0.78228 0.99749 8.0581 5 0 Median 0.27093 0.41514 7.518 2 0 Median 173710000 104350000 69364000 126050000 66409000 59637000 47668000 37941000 9726900 626 1091 644 2376;2377;2378;2379;2380;2381;2382 3508;3509;3510;3511;3512;3513;3514;3515 3510 8 ALECFCQAASEVGKEEFLDR FMLGRCYLVTGEGQKALECFCQAASEVGKE CQAASEVGKEEFLDRLIRSEDGEIVSTPRL K A L D R L 3 1 0 1 2 1 4 1 0 0 2 1 0 2 0 1 0 0 0 1 0 0 20 1 2358.062 G3V198;Q12769;E9PR16 G3V198 891 910 NUP160 Nuclear pore complex protein Nup160 yes no 3 0.010182 25.198 1 0.54408 0.70143 NaN 1 Median 0.54408 0.70143 NaN 1 0 Median NaN NaN NaN 0 0 Median 4906900 2528400 2378500 4906900 2528400 2378500 0 0 0 627 1077 645 2383 3516 3516 1 ALECLPSK LRRSQAAASHRVLQRALECLPSKEHVDVIA SHRVLQRALECLPSKEHVDVIAKFAQLEFQ R A L S K E 1 0 0 0 1 0 1 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 8 0 916.4688 Q14690 Q14690 1751 1758 PDCD11 Protein RRP5 homolog yes yes 2 0.017059 75.213 2 1.1117 1.397 3.9764 2 Median 1.1117 1.397 3.9764 2 0 Median NaN NaN NaN 0 0 Median 26886000 13450000 13435000 26886000 13450000 13435000 0 0 0 628 1494 646 2384;2385 3517;3518 3518 2 ALEDLAGFK PGSKRQLQTPKEKAQALEDLAGFKELFQTP PKEKAQALEDLAGFKELFQTPGHTEELVAA Q A L F K E 2 0 0 1 0 0 1 1 0 0 2 1 0 1 0 0 0 0 0 0 0 0 9 0 962.5073 P46013 P46013 1220 1228 MKI67 Antigen KI-67 yes yes 1;2 0.00038184 121.99 7 2 0.94039 1.2183 14.27 9 Median 0.93132 1.1902 6.0469 7 0 Median 1.006 1.5919 0.11745 2 0 Median 672660000 347050000 325600000 465620000 243810000 221810000 207040000 103240000 103800000 629 1342 647 2386;2387;2388;2389;2390;2391;2392;2393;2394 3519;3520;3521;3522;3523;3524;3525;3526;3527;3528;3529;3530;3531;3532;3533 3519 13 ALEDLVDFK TGSRRQLRTRKEKARALEDLVDFKELFSAP RKEKARALEDLVDFKELFSAPGHTEESMTI R A L F K E 1 0 0 2 0 0 1 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 9 0 1048.5441 P46013 P46013 2555 2563 MKI67 Antigen KI-67 yes yes 1;2 7.3841E-05 149.82 7 2 0.95358 1.2693 15.435 7 Median 0.90543 1.1947 6.8504 5 0 Median 1.013 1.6014 10.504 2 0 Median 843020000 418530000 424490000 578680000 284260000 294420000 264340000 134270000 130070000 630 1342 648 2395;2396;2397;2398;2399;2400;2401;2402;2403 3534;3535;3536;3537;3538;3539;3540;3541;3542;3543;3544;3545;3546;3547;3548;3549;3550 3535 17 ALEEAAVTGVLSLSGR GPGFGPGSWSRSLDRALEEAAVTGVLSLSG LEEAAVTGVLSLSGRKLREFPRGAANHDLT R A L G R K 3 1 0 0 0 0 2 2 0 0 3 0 0 0 0 2 1 0 0 2 0 0 16 0 1571.8519 F8WFB5;E9PD99;B4DU23;B4DEQ7;Q96II8 F8WFB5 52 67 LRCH3 Leucine-rich repeat and calponin homology domain-containing protein 3 yes no 2 4.7974E-05 79.744 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 729710 729710 0 729710 729710 0 0 0 0 631 798 649 2404;2405 3551;3552 3552 2 ALEEANADLEVK QNLNDRLASYLDKVRALEEANADLEVKIRD KVRALEEANADLEVKIRDWYQRQRPAEIKD R A L V K I 3 0 1 1 0 0 3 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 12 0 1300.6511 CON__P02533;P02533;CON__P08779;P08779;B4DWU0;B4E2J5 CON__P02533 135 146 KRT14;KRT16 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16 no no 2 0.00032557 132.25 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37136000 37136000 0 37136000 37136000 0 0 0 0 + 632 949;958 650 2406;2407 3553;3554 3553 2 ALEEANTELEVK QNLNDRLASYLDKVRALEEANTELEVKIRD KVRALEEANTELEVKIRDWYQRQAPGPARD R A L V K I 2 0 1 0 0 0 4 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 12 0 1344.6773 CON__Q04695;Q04695;CON__Q9QWL7;K7EPJ9;B4E2P9 CON__Q04695 104 115 KRT17 Keratin, type I cytoskeletal 17 yes no 2 4.5391E-23 174.41 3 1 0.5651 0.71193 31.724 4 Median 0.57609 0.72401 5.8135 3 0 Plateau 0.85746 1.291 NaN 1 0 Median 44720000 26388000 18332000 31161000 18942000 12219000 13559000 7445900 6113400 + 633 965 651 2408;2409;2410;2411 3555;3556;3557;3558;3559 3556 4 ALEEEEDDRPYDPEEEYDPER LDPIVQQFGQFSKDKALEEEEDDRPYDPEE DDRPYDPEEEYDPERAFDTQLVERGRRHEV K A L E R A 1 2 0 4 0 0 8 0 0 0 1 0 0 0 3 0 0 0 2 0 0 0 21 1 2624.0674 Q9BTC0 Q9BTC0 1375 1395 DIDO1 Death-inducer obliterator 1 yes yes 3 3.8892E-17 108.71 4 2 0.71705 1.0342 9.3488 6 Median 0.78707 1.0682 11.452 4 0 Median 0.6809 1.0305 5.1896 2 0 Median 81448000 44593000 36854000 37975000 20198000 17777000 43472000 24396000 19077000 634 1713 652 2412;2413;2414;2415;2416;2417 3560;3561;3562;3563;3564;3565;3566;3567;3568;3569;3570;3571;3572 3564 13 ALEEEEDDRPYDPEEEYDPERAFDTQLVER LDPIVQQFGQFSKDKALEEEEDDRPYDPEE EYDPERAFDTQLVERGRRHEVERAPEAAAA K A L E R G 2 3 0 5 0 1 9 0 0 0 2 0 0 1 3 0 1 0 2 1 0 0 30 2 3683.6023 Q9BTC0 Q9BTC0 1375 1404 DIDO1 Death-inducer obliterator 1 yes yes 4 0.01533 15.641 1 0.73443 0.88878 NaN 1 Median 0.73443 0.88878 NaN 1 0 Median NaN NaN NaN 0 0 Median 9130800 4785100 4345700 9130800 4785100 4345700 0 0 0 635 1713 653 2418 3573 3573 1 ALEEELAGLK KDVQDELRIKENELRALEEELAGLKNTAEK ENELRALEEELAGLKNTAEKYRQLKQQWEM R A L L K N 2 0 0 0 0 0 3 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1071.5812 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;B3KM27 A0A024R158 697 706 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 1;2 1.2166E-10 163.15 5 2 0.6954 0.97533 5.0036 6 Median 0.73591 0.96204 5.271 4 0 Median 0.63081 0.99649 0.12898 2 0 Median 728980000 439280000 289700000 395520000 231990000 163530000 333460000 207290000 126170000 636 50 654 2419;2420;2421;2422;2423;2424;2425 3574;3575;3576;3577;3578;3579;3580;3581;3582;3583;3584;3585;3586;3587 3578 14 ALEEGLTPQEICDK YLCGTDEYGTATETKALEEGLTPQEICDKY KALEEGLTPQEICDKYHIIHADIYRWFNIS K A L D K Y 1 0 0 1 1 1 3 1 0 1 2 1 0 0 1 0 1 0 0 0 0 0 14 0 1601.7607 A8K492;P56192;B4DF61;B4E0E9;A0A024RBA2;H0YHV5 A8K492 322 335 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 5.0147E-13 152.96 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9680900 2184700 7496200 4412200 2184700 2227500 5268700 0 5268700 637 602 655 2426;2427;2428;2429;2430 3588;3589;3590;3591;3592 3588 5 ALEEQNELLSAELGGLR WELNRRLEAYLARVKALEEQNELLSAELGG EEQNELLSAELGGLRAQSADTSWRAHADDE K A L L R A 2 1 1 0 0 1 4 2 0 0 5 0 0 0 0 1 0 0 0 0 0 0 17 0 1840.9531 D3DVC4;P48681;Q05BW3;A5PKT9 D3DVC4 28 44 NES Nestin yes no 2 1.5388E-06 111.72 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4294400 4294400 0 4294400 4294400 0 0 0 0 638 986 656 2431 3593 3593 1 ALEESNYELEGK QNLNDRLASYLDKVRALEESNYELEGKIKE KVRALEESNYELEGKIKEWYEKHGNSHQGE R A L G K I 1 0 1 0 0 0 4 1 0 0 2 1 0 0 0 1 0 0 1 0 0 0 12 0 1380.6409 CON__P13645;P13645;CON__P02535-1 CON__P13645 166 177 KRT10 Keratin, type I cytoskeletal 10 yes no 2 1.1372E-24 172.27 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 906580000 906580000 0 416490000 416490000 0 490090000 490090000 0 + 639 960 657 2432;2433;2434;2435;2436 3594;3595;3596;3597;3598 3595 5 ALEFLDQLLLQNIR VVPVVMDCESTVQEKALEFLDQLLLQNIRH KALEFLDQLLLQNIRHHSHFHSGDDSQVLA K A L I R H 1 1 1 1 0 2 1 0 0 1 5 0 0 1 0 0 0 0 0 0 0 0 14 0 1684.9512 P42695;G3V1A9;E9PKK4 P42695 639 652 NCAPD3 Condensin-2 complex subunit D3 yes no 2 2.0425E-10 123.01 2 1.3566 1.8458 NaN 1 Median 1.3566 1.8458 NaN 1 0 Median NaN NaN NaN 0 0 Median 30425000 20770000 9654400 30425000 20770000 9654400 0 0 0 640 1338 658 2437;2438 3599;3600 3599 1 ALEFVTNPDIAAK QKQANEKRALRKKRKALEFVTNPDIAAKKK RKALEFVTNPDIAAKKKMKKHKNKSEAKKR K A L A K K 3 0 1 1 0 0 1 0 0 1 1 1 0 1 1 0 1 0 0 1 0 0 13 0 1387.7347 O75691;B4DN27 O75691 2732 2744 UTP20 Small subunit processome component 20 homolog yes no 2 0.00012145 120.09 3 1 0.98411 1.2805 6.8293 4 Median 0.98549 1.2647 1.811 3 0 Median 0.98273 1.4521 NaN 1 0 Median 38278000 19645000 18633000 31675000 17030000 14644000 6603400 2614900 3988500 641 1207 659 2439;2440;2441;2442 3601;3602;3603;3604;3605;3606 3604 6 ALEHSALAINHK GKYTKFSDSYASVIKALEHSALAINHKLEI VIKALEHSALAINHKLEIKYIDSADLEPIT K A L H K L 3 0 1 0 0 0 1 0 2 1 2 1 0 0 0 1 0 0 0 0 0 0 12 0 1302.7044 P17812;B4E1E0;B4DMB5 P17812 320 331 CTPS1 CTP synthase 1;CTP synthase no no 2 0.0051619 128.27 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1249600 1249600 0 1249600 1249600 0 0 0 0 642 1278 660 2443 3607 3607 1 ALEIIPR TIPGKQQLLIGAYAKALEIIPRQLCDNAGF LLIGAYAKALEIIPRQLCDNAGFDATNILN K A L P R Q 1 1 0 0 0 0 1 0 0 2 1 0 0 0 1 0 0 0 0 0 0 0 7 0 810.49634 B7Z1C9;B7Z7I4;Q6IBT3;Q53HV2;Q99832 B7Z1C9 313 319 CCT7 T-complex protein 1 subunit eta yes no 2 0.01646 83.614 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2932100 2932100 0 2932100 2932100 0 0 0 0 643 903 661 2444;2445 3608;3609 3609 2 ALEIITDFSGIVLEK NIAAELYISNKQYDKALEIITDFSGIVLEK ALEIITDFSGIVLEKKTSEEGTSEENKAPE K A L E K K 1 0 0 1 0 0 2 1 0 3 2 1 0 1 0 1 1 0 0 1 0 0 15 0 1646.9131 Q9Y5Q9;H7C143 Q9Y5Q9 345 359 GTF3C3 General transcription factor 3C polypeptide 3 yes no 2 4.5898E-05 105.17 2 0.66212 0.8274 NaN 1 Median 0.66212 0.8274 NaN 1 0 Median NaN NaN NaN 0 0 Median 3378700 2307000 1071700 3378700 2307000 1071700 0 0 0 644 1831 662 2446;2447 3610;3611 3611 2 ALELALK MDDKPGVSGQLPKGKALELALKRPRPPVLS SGQLPKGKALELALKRPRPPVLSVCSSSET K A L L K R 2 0 0 0 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 756.47454 Q9ULJ3;Q5H9S0;B4DTN6 Q9ULJ3 267 273 ZBTB21;DKFZp781N1974 Zinc finger and BTB domain-containing protein 21 yes no 2 0.022472 95.793 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 574750 574750 0 574750 574750 0 0 0 0 645 1790 663 2448;2449;2450 3612;3613;3614 3614 3 ALELDSNLYR KGFMDGKQACVLMIKALELDSNLYRIGQSK VLMIKALELDSNLYRIGQSKVFFRAGVLAH K A L Y R I 1 1 1 1 0 0 1 0 0 0 3 0 0 0 0 1 0 0 1 0 0 0 10 0 1192.6088 A0A024R1N1;P35579;Q86XU5;B4E3S1;A0A0U4BW16 A0A024R1N1 746 755 MYH9 Myosin-9 no no 2 3.3963E-11 171.53 4 2 0.99792 1.3772 72.709 6 Median 0.98254 1.3858 1.6324 4 0 Linear 3.5652 5.5553 3.7955 2 0 Median 579210000 284320000 294890000 530280000 274170000 256110000 48933000 10146000 38787000 646 61;490 664 2451;2452;2453;2454;2455;2456 3615;3616;3617;3618;3619;3620;3621;3622;3623;3624;3625 3620 11 ALELFVK LDVALEIRQAANIVRALELFVKADVLSGEN RQAANIVRALELFVKADVLSGENAYMCAKC R A L V K A 1 0 0 0 0 0 1 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 7 0 818.49019 A0A024R8V6;Q9P275;A0A075B784;Q9H9C5;E9PEW0;K7EMM6 A0A024R8V6 284 290 USP36;DUB1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 2 0.027093 76.847 2 1.0572 1.3851 8.9781 2 Median 1.0572 1.3851 8.9781 2 0 Median NaN NaN NaN 0 0 Median 8091400 3559100 4532300 8091400 3559100 4532300 0 0 0 647 205 665 2457;2458 3626;3627;3628;3629 3628 4 ALELTGLK KFGYVDFESAEDLEKALELTGLKVFGNEIK SAEDLEKALELTGLKVFGNEIKLEKPKGKD K A L L K V 1 0 0 0 0 0 1 1 0 0 3 1 0 0 0 0 1 0 0 0 0 0 8 0 843.50657 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99 B3KTP9 286 293 NCL Nucleolin yes no 2 0.005793 104.45 4 2 0.92347 1.1634 4.6561 6 Median 0.95359 1.2014 3.8376 4 0 Median 0.71047 1.1263 2.9868 2 0 Median 222700000 119550000 103150000 153280000 79879000 73405000 69418000 39671000 29748000 648 119 666 2459;2460;2461;2462;2463;2464 3630;3631;3632;3633;3634;3635;3636;3637 3633 8 ALEQFATVVEAK LVHPELSRSGELAVRALEQFATVVEAKLIK AVRALEQFATVVEAKLIKHKKGIVNEQFLL R A L A K L 3 0 0 0 0 1 2 0 0 0 1 1 0 1 0 0 1 0 0 2 0 0 12 0 1304.6976 B3KPA6;Q53HR2;B4DEA8;P49748;B3KPX1;G3V1M7;J3QRJ8;K7EMF8 B3KPA6 463 474 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.0018809 99.283 1 0.74606 0.97237 NaN 1 Median 0.74606 0.97237 NaN 1 0 Median NaN NaN NaN 0 0 Median 4647500 2873300 1774200 4647500 2873300 1774200 0 0 0 649 763 667 2465 3638 3638 1 ALEQQVEEMK DDVGKSVHELEKSKRALEQQVEEMKTQLEE EKSKRALEQQVEEMKTQLEELEDELQATED R A L M K T 1 0 0 0 0 2 3 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 10 0 1203.5805 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1529 1538 MYH9;FLJ00279 Myosin-9 no no 2 0.0042967 55.908 1 2.215 2.9669 NaN 1 Median NaN NaN NaN 0 0 Median 2.215 2.9669 NaN 1 0 Median 1356200 374710 981530 0 0 0 1356200 374710 981530 650 61;490 668 2466 3639 3639 15 1 ALESDMAPVLIMATNR EVHMLDIESFSFLNRALESDMAPVLIMATN LESDMAPVLIMATNRGITRIRGTSYQSPHG R A L N R G 3 1 1 1 0 0 1 0 0 1 2 0 2 0 1 1 1 0 0 1 0 0 16 0 1730.8695 Q9Y230;B3KNL2;M0R0Y3 Q9Y230 315 330 RUVBL2 RuvB-like 2 yes no 2 7.1354E-06 68.44 2 0.75712 1.1031 NaN 1 Median NaN NaN NaN 0 0 Median 0.75712 1.1031 NaN 1 0 Median 21306000 15448000 5858200 0 0 0 21306000 15448000 5858200 651 1801 669 2467;2468 3640;3641 3641 831;832 2 ALESSIAPIVIFASNR EVHMLDIECFTYLHRALESSIAPIVIFASN LESSIAPIVIFASNRGNCVIRGTEDITSPH R A L N R G 3 1 1 0 0 0 1 0 0 3 1 0 0 1 1 3 0 0 0 1 0 0 16 0 1686.9305 B5BUB1;Q9Y265;E7ETR0;B3KRS7;H7C4G5;H7C4I3;J3QLR1 B5BUB1 318 333 RUVBL1 RuvB-like 1 yes no 2 6.6885E-25 171.32 4 2 0.59251 0.8069 36.725 6 Median 0.57616 0.78505 4.5182 4 0 Median 0.97466 1.5723 8.8948 2 0 Median 252500000 144100000 108390000 148090000 93473000 54615000 104410000 50629000 53779000 652 896 670 2469;2470;2471;2472;2473;2474 3642;3643;3644;3645;3646;3647;3648;3649;3650;3651;3652;3653 3642 12 ALETDSVSGVSK NGTANGFSEINSKEKALETDSVSGVSKQSK KEKALETDSVSGVSKQSKKQKL________ K A L S K Q 1 0 0 1 0 0 1 1 0 0 1 1 0 0 0 3 1 0 0 2 0 0 12 0 1191.5983 J3QQW9;Q15022;A8K1U9 J3QQW9 698 709 SUZ12 Polycomb protein SUZ12 yes no 2 1.8541E-07 146.11 3 2 1.1362 1.3155 13.616 4 Linear 1.0856 1.3483 14.417 3 0 Plateau 0.92579 1.3896 NaN 1 0 Median 96411000 52284000 44127000 66985000 32329000 34656000 29426000 19954000 9471400 653 1143 671 2475;2476;2477;2478;2479 3654;3655;3656;3657;3658;3659;3660 3655 7 ALETLTGALFQRPPLIAAVK VRLHNAIEGGTQLSRALETLTGALFQRPPL TGALFQRPPLIAAVKRQLRVRTIYESKMIE R A L V K R 4 1 0 0 0 1 1 1 0 1 4 1 0 1 2 0 2 0 0 1 0 0 20 1 2108.2358 O60832;C9IYT0;U5UA77;H7C0M1;H7BZF2 O60832 172 191 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2;3 8.4197E-104 236.92 8 2 0.68152 0.90982 7.0825 10 Median 0.68596 0.90982 4.6896 8 0 Median 0.55814 0.96389 15.56 2 0 Median 634120000 370650000 263460000 514930000 294900000 220030000 119190000 75756000 43433000 654 1193 672 2480;2481;2482;2483;2484;2485;2486;2487;2488;2489 3661;3662;3663;3664;3665;3666;3667;3668;3669;3670;3671;3672;3673;3674;3675;3676;3677;3678;3679;3680;3681;3682 3675 22 ALEYTIYNQELNETR KEELAQYQKWDKMRRALEYTIYNQELNETR ALEYTIYNQELNETRAKLDELSAKRETSGE R A L T R A 1 1 2 0 0 1 3 0 0 1 2 0 0 0 0 0 2 0 2 0 0 0 15 0 1855.8952 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 222 236 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 7.2652E-19 160.15 4 0.52903 0.72429 12.218 4 Median 0.52903 0.72429 12.218 4 0 Median NaN NaN NaN 0 0 Median 26448000 16101000 10347000 26448000 16101000 10347000 0 0 0 655 663 673 2490;2491;2492;2493 3683;3684;3685;3686;3687;3688;3689;3690;3691 3689 9 ALEYVEAK KQHGTEKDVQAVKAKALEYVEAKSSVLED_ VQAVKAKALEYVEAKSSVLED_________ K A L A K S 2 0 0 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 8 0 921.48075 Q14690 Q14690 1858 1865 PDCD11 Protein RRP5 homolog yes yes 2 0.014793 65.252 2 2 0.82958 1.2351 15.152 3 Median 1.2245 1.5558 NaN 1 0 Median 0.79874 1.2018 3.8591 2 0 Median 35550000 18891000 16659000 12571000 6133900 6437600 22978000 12757000 10221000 656 1494 674 2494;2495;2496;2497 3692;3693;3694;3695 3692 4 ALFATETFAMGINMPAR LKETIEILFSEGLIKALFATETFAMGINMP FATETFAMGINMPARTVLFTNARKFDGKDF K A L A R T 4 1 1 0 0 0 1 1 0 1 1 0 2 2 1 0 2 0 0 0 0 0 17 0 1839.9012 P42285;A8K6I4;B4E3M6 P42285 478 494 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 0.00020161 57.175 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5055200 5055200 0 0 0 0 5055200 5055200 0 657 1336 675 2498 3696 3696 559;560 1 ALFAVPK PKEHKKLFLVQLQEKALFAVPKNYKLVAAP FLVQLQEKALFAVPKNYKLVAAPLFELYDN K A L P K N 2 0 0 0 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 1 0 0 7 0 744.45341 H3BND3;B2R6U8;A0A024R6W2;O43809 H3BND3 117 123 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes no 2 0.019186 69.39 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2894200 2894200 0 2894200 2894200 0 0 0 0 658 165 676 2499 3697 3697 1 ALFEEVPELLTEAEKK VTGTIGEDEDLIKWKALFEEVPELLTEAEK LFEEVPELLTEAEKKEWVEKLTEVSISSDA K A L K K E 2 0 0 0 0 0 5 0 0 0 3 2 0 1 1 0 1 0 0 1 0 0 16 1 1844.9771 B4DP06;V9HWH7;B2R7P8;P31939;H7C1S2 B4DP06 451 466 HEL-S-70p;ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 3 0.014289 53.168 3 0.52101 0.58889 14.911 3 Plateau 0.52101 0.58889 14.911 3 0 Plateau NaN NaN NaN 0 0 Median 10856000 7831000 3024500 10856000 7831000 3024500 0 0 0 659 707 677 2500;2501;2502 3698;3699;3700 3698 3 ALFPGDSEIDQLFR FGVPVRTYTHEVTRRALFPGDSEIDQLFRI RALFPGDSEIDQLFRIFRTLGTPDEVVWPG R A L F R I 1 1 0 2 0 1 1 1 0 1 2 0 0 2 1 1 0 0 0 0 0 0 14 0 1606.7991 E7ESI2;B4DDL9;A0A024RB10;A0A024RB77;G3V5T9;P24941;A0A024R8R3;Q00526;K7EJ83 E7ESI2 141 154 CDK2;CDK3 Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 yes no 2 0.0019763 49.5 1 1.1267 1.4718 NaN 1 Median 1.1267 1.4718 NaN 1 0 Median NaN NaN NaN 0 0 Median 7546100 3741300 3804800 7546100 3741300 3804800 0 0 0 660 254 678 2503 3701 3701 1 ALFREPDLVLR WAFSDEWVACLGSNRALFREPDLVLRLLET GSNRALFREPDLVLRLLETVIDVSTADRAI R A L L R L 1 2 0 1 0 0 1 0 0 0 3 0 0 1 1 0 0 0 0 1 0 0 11 1 1327.7612 Q9HBB9;Q8WUM5;Q9HC39 Q9HBB9 435 445 GEMIN4 yes no 3 2.8905E-05 91.937 1 0.36911 0.47611 NaN 1 Median 0.36911 0.47611 NaN 1 0 Median NaN NaN NaN 0 0 Median 6822700 4888800 1933900 6822700 4888800 1933900 0 0 0 661 1667 679 2504 3702 3702 1 ALGEPITLFGEGPAER INVSTDDSEVKACLRALGEPITLFGEGPAE LGEPITLFGEGPAERRERLRNILSVVGTDA R A L E R R 2 1 0 0 0 0 3 3 0 1 2 0 0 1 2 0 1 0 0 0 0 0 16 0 1655.8519 Q6IAP9;Q5T1M7;B2R7V4;Q59EL4;O43172 Q6IAP9 113 128 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes no 2 9.3934E-05 67.153 1 2 0.43715 0.61428 5.1174 2 Median NaN NaN NaN 0 0 Median 0.43715 0.61428 5.1174 2 0 Median 24325000 16516000 7809700 3691600 3691600 0 20634000 12824000 7809700 662 708 680 2505;2506;2507 3703;3704;3705 3703 3 ALGFPEGLVIQAYFACEK IQVTPQEKEAIERLKALGFPEGLVIQAYFA FPEGLVIQAYFACEKNENLAANFLLQQNFD K A L E K N 3 0 0 0 1 1 2 2 0 1 2 1 0 2 1 0 0 0 1 1 0 0 18 0 2012.0077 P54727;Q53F10;B7Z4W4;B7ZA74 P54727 375 392 RAD23B UV excision repair protein RAD23 homolog B yes no 2 6.9866E-23 112.51 3 0.66243 0.83628 14.502 3 Median 0.66243 0.83628 14.502 3 0 Median NaN NaN NaN 0 0 Median 15018000 8503300 6514900 15018000 8503300 6514900 0 0 0 663 1374 681 2508;2509;2510 3706;3707;3708;3709;3710;3711;3712;3713;3714 3714 9 ALGLFSNDIPHVVR ASERRTASALFAGFRALGLFSNDIPHVVRF RALGLFSNDIPHVVRFSALKRRFYVTTCVG R A L V R F 1 1 1 1 0 0 0 1 1 1 2 0 0 1 1 1 0 0 0 2 0 0 14 0 1536.8413 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 19 32 WDR36 WD repeat-containing protein 36 yes no 2;3 1.7226E-10 128.57 7 4 0.79056 1.0799 25.336 10 Median 0.80312 1.1007 28.109 7 0 Median 0.61785 1.0061 6.7682 3 0 Median 308550000 179100000 129450000 202500000 111500000 91002000 106050000 67604000 38447000 664 404 682 2511;2512;2513;2514;2515;2516;2517;2518;2519;2520;2521 3715;3716;3717;3718;3719;3720;3721;3722;3723;3724;3725;3726;3727;3728;3729;3730;3731;3732 3723 18 ALGLSTDDAYEELR NARHSDASLTDTVNKALGLSTDDAYEELRQ KALGLSTDDAYEELRQKHEYELNSTPDKKD K A L L R Q 2 1 0 2 0 0 2 1 0 0 3 0 0 0 0 1 1 0 1 0 0 0 14 0 1551.7417 Q9UK61;A0A024R363;A0A087X0F1 Q9UK61 796 809 FAM208A;C3orf63 Protein FAM208A yes no 2 0.012191 52.247 1 0.67503 0.93931 NaN 1 Median 0.67503 0.93931 NaN 1 0 Median NaN NaN NaN 0 0 Median 5074300 3168800 1905500 5074300 3168800 1905500 0 0 0 665 1787 683 2522 3733 3733 0 ALGLVIR GVLTGSPEQKEEAAKALGLVIRLTSADALR EQKEEAAKALGLVIRLTSADALRPSVVSIT K A L I R L 1 1 0 0 0 0 0 1 0 1 2 0 0 0 0 0 0 0 0 1 0 0 7 0 740.49086 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2286 2292 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.040375 54.525 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 666 1000 684 2523 3734 3734 1 ALGLVTPAGVLLAGPPGCGK TMAILAPVRNPDQFKALGLVTPAGVLLAGP TPAGVLLAGPPGCGKTLLAKAVANESGLNF K A L G K T 3 0 0 0 1 0 0 5 0 0 4 1 0 0 3 0 1 0 0 2 0 0 20 0 1847.0339 B4DLM8;O15381;B4DQJ4 B4DLM8 609 628 NVL Nuclear valosin-containing protein-like yes no 2 3.7049E-07 102.87 2 0.50586 0.63626 24.989 2 Median 0.50586 0.63626 24.989 2 0 Median NaN NaN NaN 0 0 Median 3035000 1992900 1042200 3035000 1992900 1042200 0 0 0 667 827 685 2524;2525 3735;3736;3737;3738;3739;3740 3740 6 ALGQNPTNAEVLK GDGKILYSQCGDVMRALGQNPTNAEVLKVL MRALGQNPTNAEVLKVLGNPKSDEMNVKVL R A L L K V 2 0 2 0 0 1 1 1 0 0 2 1 0 0 1 0 1 0 0 1 0 0 13 0 1353.7252 F8W1R7;J3KND3;G8JLA2;G3V1V0;B7Z6Z4;P60660;Q6IBG5;F8VPF3;F8W1I5;A0A024RB31;B4E368;P14649 F8W1R7 38 50 MYL6;MYL6B Myosin light polypeptide 6;Myosin light chain 6B yes no 2 4.652E-22 150.04 3 2 0.99108 1.2154 77.977 5 Median 0.72191 0.92137 24.83 3 0 Median 2.3041 3.6067 37.075 2 0 Median 195620000 94918000 100700000 134090000 77982000 56110000 61532000 16937000 44595000 668 915 686 2526;2527;2528;2529;2530 3741;3742;3743;3744;3745;3746 3743 6 ALGSAQYEDPR ERDPFTCPGFASQDKALGSAQYEDPRNLHS SQDKALGSAQYEDPRNLHSAGRSSSPAGET K A L P R N 2 1 0 1 0 1 1 1 0 0 1 0 0 0 1 1 0 0 1 0 0 0 11 0 1205.5677 Q9BTC0 Q9BTC0 1694 1704 DIDO1 Death-inducer obliterator 1 yes yes 2 0.011713 47.334 2 0.60533 0.86353 3.9407 2 Median NaN NaN NaN 0 0 Median 0.60533 0.86353 3.9407 2 0 Median 17348000 11215000 6132500 0 0 0 17348000 11215000 6132500 669 1713 687 2531;2532 3747;3748;3749 3747 3 ALGTEVIQLFPEK FLGSELACALGRKARALGTEVIQLFPEKGN ARALGTEVIQLFPEKGNMGKILPEYLSNWT R A L E K G 1 0 0 0 0 1 2 1 0 1 2 1 0 1 1 0 1 0 0 1 0 0 13 0 1443.7973 O95831 O95831 325 337 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes yes 2 1.8045E-41 222.18 4 1 0.63024 0.77655 35.57 5 Median 0.62128 0.77207 5.7554 4 0 Median 1.1303 1.7085 NaN 1 0 Median 94422000 58691000 35731000 79794000 51157000 28637000 14628000 7533400 7094300 670 1224 688 2533;2534;2535;2536;2537 3750;3751;3752;3753;3754;3755;3756;3757;3758 3750 9 ALHASALK WSTWRQRLGQVRVSRALHASALKHRALSLQ GQVRVSRALHASALKHRALSLQVQAWSQWR R A L L K H 3 0 0 0 0 0 0 0 1 0 2 1 0 0 0 1 0 0 0 0 0 0 8 0 809.47594 E5RJU6;D3YTJ2;A0A024R1K2;A8K8P3 E5RJU6 239 246 SFI1 Protein SFI1 homolog yes no 2 0.00085639 94.539 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 671 59 689 2538 3759 3759 1 ALIAAQLDNAIEK LSKKVERREKRREEKALIAAQLDNAIEKEL EKALIAAQLDNAIEKELLERLKQDTYGDIY K A L E K E 4 0 1 1 0 1 1 0 0 2 2 1 0 0 0 0 0 0 0 0 0 0 13 0 1368.7613 Q9BXY0 Q9BXY0 152 164 MAK16 Protein MAK16 homolog yes yes 2 3.0113E-12 156.48 4 2 0.73952 0.98767 4.623 6 Median 0.77407 0.97568 5.9663 4 0 Median 0.61813 0.98963 0.27138 2 0 Median 313260000 180250000 133000000 202480000 114890000 87587000 110780000 65362000 45418000 672 1724 690 2539;2540;2541;2542;2543;2544 3760;3761;3762;3763;3764;3765;3766;3767;3768;3769;3770;3771 3762 12 ALIAAQYSGAQVR AGTLYTYPENWRAFKALIAAQYSGAQVRVL FKALIAAQYSGAQVRVLSAPPHFHFGQTNR K A L V R V 4 1 0 0 0 2 0 1 0 1 1 0 0 0 0 1 0 0 1 1 0 0 13 0 1346.7306 Q53YD7;P26641;B4DUK7;B4DSR4;Q2F838 Q53YD7 18 30 EEF1G Elongation factor 1-gamma yes no 2 2.7031E-20 197.79 4 2 0.33227 0.4539 91.64 5 Median 0.33227 0.4539 14.858 3 0 Plateau 1.3692 2.0967 3.4454 2 0 Median 168590000 117150000 51441000 129640000 100810000 28827000 38955000 16341000 22614000 673 1299 691 2545;2546;2547;2548;2549;2550 3772;3773;3774;3775;3776;3777;3778;3779;3780;3781;3782;3783 3774 12 ALIAGGGAPEIELALR IHDALCVIRCLVKKRALIAGGGAPEIELAL LIAGGGAPEIELALRLTEYSRTLSGMESYC R A L L R L 4 1 0 0 0 0 2 3 0 2 3 0 0 0 1 0 0 0 0 0 0 0 16 0 1549.8828 B7Z9L0;B7Z2Z8;A8K3C3;P50991;B7Z2F4 B7Z9L0 364 379 CCT4 T-complex protein 1 subunit delta yes no 2 0.00066149 116.54 2 1 0.2431 0.3218 NaN 1 Median 0.2431 0.3218 NaN 1 0 Median NaN NaN NaN 0 0 Median 29165000 26491000 2674400 25469000 22795000 2674400 3695700 3695700 0 674 593 692 2551;2552;2553 3784;3785;3786 3785 3 ALIETYQK EINSSDSINIETEEKALIETYQKEISPYEN NIETEEKALIETYQKEISPYENKMGKTCNS K A L Q K E 1 0 0 0 0 1 1 0 0 1 1 1 0 0 0 0 1 0 1 0 0 0 8 0 964.52295 Q8NG31;H0YCZ2 Q8NG31 1763 1770 CASC5 Protein CASC5 yes no 2 0.013202 66.682 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6640800 6640800 0 3913600 3913600 0 2727200 2727200 0 675 1656 693 2554;2555 3787;3788 3787 2 ALIGQEGDPDLK GKKLIIVASQAMRYRALIGQEGDPDLKLPD RYRALIGQEGDPDLKLPDFSYCILERLGRS R A L L K L 1 0 0 2 0 1 1 2 0 1 2 1 0 0 1 0 0 0 0 0 0 0 12 0 1254.6456 Q6AHZ7;Q12789 Q6AHZ7 161 172 DKFZp686A111;GTF3C1 General transcription factor 3C polypeptide 1 yes no 2 0.0046399 51.927 2 0.85184 1.2705 2.2138 2 Median NaN NaN NaN 0 0 Median 0.85184 1.2705 2.2138 2 0 Median 16899000 9308300 7591200 0 0 0 16899000 9308300 7591200 676 1457 694 2556;2557 3789;3790 3789 2 ALIGQEGDPDLKLPDFSYCILER GKKLIIVASQAMRYRALIGQEGDPDLKLPD PDLKLPDFSYCILERLGRSRWQGELQRDLH R A L E R L 1 1 0 3 1 1 2 2 0 2 4 1 0 1 2 1 0 0 1 0 0 0 23 1 2648.3156 Q6AHZ7;Q12789 Q6AHZ7 161 183 DKFZp686A111;GTF3C1 General transcription factor 3C polypeptide 1 yes no 3 0.0038728 101.05 2 0.93447 1.1856 NaN 1 Median 0.93447 1.1856 NaN 1 0 Median NaN NaN NaN 0 0 Median 3471900 1783200 1688700 3471900 1783200 1688700 0 0 0 677 1457 695 2558;2559 3791;3792 3791 2 ALILSPTR MFERLKTHSAQTGARALILSPTRELALQTL SAQTGARALILSPTRELALQTLKFTKELGK R A L T R E 1 1 0 0 0 0 0 0 0 1 2 0 0 0 1 1 1 0 0 0 0 0 8 0 869.53345 Q8TDD1;F8VRX4 Q8TDD1 169 176 DDX54 ATP-dependent RNA helicase DDX54 yes no 2 0.0046543 98.418 3 0.84257 1.1322 3.55 2 Median 0.84257 1.1322 3.55 2 0 Median NaN NaN NaN 0 0 Median 25590000 12704000 12886000 25590000 12704000 12886000 0 0 0 678 1658 696 2560;2561;2562 3793;3794;3795 3794 3 ALIPLALEGTDVGQTK EVEDRGTVVAQGGGRALIPLALEGTDVGQT LIPLALEGTDVGQTKAAQALAKLTITSNPE R A L T K A 2 0 0 1 0 1 1 2 0 1 3 1 0 0 1 0 2 0 0 1 0 0 16 0 1624.9036 Q9H3U1 Q9H3U1 692 707 UNC45A Protein unc-45 homolog A yes yes 2 0.024311 77.597 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2292200 2292200 0 2292200 2292200 0 0 0 0 679 1731 697 2563;2564 3796;3797 3797 2 ALIVEPSRELAEQTLNNIK NAQVTQTKFLPNAPKALIVEPSRELAEQTL EPSRELAEQTLNNIKQFKKYIDNPKLRELL K A L I K Q 2 1 2 0 0 1 3 0 0 2 3 1 0 0 1 1 1 0 0 1 0 0 19 1 2137.1743 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 208 226 DDX1 ATP-dependent RNA helicase DDX1 yes no 3 3.8443E-09 89.982 4 2 0.67726 0.9377 8.2453 6 Median 0.71085 0.9377 5.1862 4 0 Median 0.59542 0.91808 15.921 2 0 Median 87385000 53331000 34054000 67483000 40271000 27212000 19902000 13060000 6841800 680 378 698 2565;2566;2567;2568;2569;2570 3798;3799;3800;3801;3802;3803;3804;3805;3806;3807;3808 3807 11 ALIVLAHSER ______________________________ MVGRRALIVLAHSERTSFNYAMKEAAAAAL R A L E R T 2 1 0 0 0 0 1 0 1 1 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1107.64 B4DLR8;Q3B792;P15559;H3BRK3;Q53G81 B4DLR8 6 15 NQO1 NAD(P)H dehydrogenase [quinone] 1 yes no 2;3 0.0095901 60.59 2 0.47079 0.65266 NaN 1 Median 0.47079 0.65266 NaN 1 0 Median NaN NaN NaN 0 0 Median 9147400 7176700 1970700 9147400 7176700 1970700 0 0 0 681 829 699 2571;2572 3809;3810 3810 2 ALIVVPYAEGVIPDEAK AVVAQHLTNTVFVDRALIVVPYAEGVIPDE IVVPYAEGVIPDEAKALSLLAPANAVAGLL R A L A K A 3 0 0 1 0 0 2 1 0 2 1 1 0 0 2 0 0 0 1 3 0 0 17 0 1782.9768 Q05BU6;Q6PJY9;Q6PKC9;Q5T760;Q6PJB9;Q05519 Q05BU6 104 120 SFRS11;SRSF11 Serine/arginine-rich splicing factor 11 yes no 2 0.00036034 62.891 4 1 0.49289 0.64028 45.395 5 Median 0.45807 0.59159 13.694 4 0 Median 1.0851 1.5959 NaN 1 0 Median 22389000 13177000 9211700 16601000 11198000 5402600 5788000 1978900 3809100 682 1442 700 2573;2574;2575;2576;2577 3811;3812;3813;3814;3815;3816;3817 3814 7 ALLAEGVILR LGETDEEKLFVETGKALLAEGVILRRVGEA VETGKALLAEGVILRRVGEARTVSISLLKL K A L L R R 2 1 0 0 0 0 1 1 0 1 3 0 0 0 0 0 0 0 0 1 0 0 10 0 1053.6546 J3QLR8;Q9Y3D9 J3QLR8 124 133 MRPS23 28S ribosomal protein S23, mitochondrial yes no 2 0.0062767 81.296 3 0.5318 0.73742 17.974 2 Median 0.5318 0.73742 17.974 2 0 Median NaN NaN NaN 0 0 Median 7498000 5382300 2115700 7498000 5382300 2115700 0 0 0 683 1141 701 2578;2579;2580 3818;3819;3820;3821 3819 4 ALLAVIGADSVTLK EGAKSQEDTEAVFKKALLAVIGADSVTLKN KALLAVIGADSVTLKNKYLDWAYRSGGYKK K A L L K N 3 0 0 1 0 0 0 1 0 1 3 1 0 0 0 1 1 0 0 2 0 0 14 0 1369.8181 B3KQ21;Q9NYH9;B3KX32;Q9P1J8 B3KQ21 464 477 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 3.2988E-14 135.99 3 2 1.0074 1.2659 11.31 5 Median 1.0074 1.3084 4.9838 3 0 Plateau 0.88738 1.3847 18.473 2 0 Median 219390000 114930000 104460000 150410000 76761000 73654000 68977000 38166000 30811000 684 768 702 2581;2582;2583;2584;2585 3822;3823;3824;3825;3826;3827;3828;3829;3830;3831 3826 10 ALLDASETTSTR NRKVEQLQQEYTEMKALLDASETTSTRKIK EMKALLDASETTSTRKIKEEEKRVNSKFDT K A L T R K 2 1 0 1 0 0 1 0 0 0 2 0 0 0 0 2 3 0 0 0 0 0 12 0 1263.6307 Q14258 Q14258 250 261 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 no no 2 0.0033017 59.542 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2912100 0 2912100 0 0 0 2912100 0 2912100 685 1485 703 2586;2587 3832;3833 3833 2 ALLDYLDENTETDPSLVFSR KQVSGGEDEIQQLQKALLDYLDENTETDPS LDENTETDPSLVFSRKFYIAQWFRDTTLET K A L S R K 1 1 1 3 0 0 2 0 0 0 4 0 0 1 1 2 2 0 1 1 0 0 20 0 2297.1063 Q6IEH8;Q6KC79 Q6IEH8 1654 1673 NIPBL Nipped-B-like protein yes no 2 6.029E-09 102.9 2 0.57174 0.78784 26.095 2 Median 0.57174 0.78784 26.095 2 0 Median NaN NaN NaN 0 0 Median 5636300 3546100 2090200 5636300 3546100 2090200 0 0 0 686 1586 704 2588;2589 3834;3835 3834 1 ALLEAGALPNAPNSYGR WLATAAARGRVEEVRALLEAGALPNAPNSY LEAGALPNAPNSYGRRPIQVMMMGSARVAE R A L G R R 4 1 2 0 0 0 1 2 0 0 3 0 0 0 2 1 0 0 1 0 0 0 17 0 1712.8846 J3QRG6;K7PML8;P42771;D1LYX3;Q2MJK0;Q208B5;G3XAG3;R9S252 J3QRG6 30 46 CDKN2A;p16ink4a Cyclin-dependent kinase inhibitor 2A yes no 2 2.39E-09 112.08 5 1 0.45538 0.6073 NaN 1 Median 0.45538 0.6073 NaN 1 0 Median NaN NaN NaN 0 0 Median 17307000 10282000 7025100 13709000 10282000 3426500 3598700 0 3598700 687 1146 705 2590;2591;2592;2593;2594;2595 3836;3837;3838;3839;3840;3841;3842 3840 7 ALLELQLEPEELYQTFQR AERIKPVLMMNKMDRALLELQLEPEELYQT ELQLEPEELYQTFQRIVENVNVIISTYGEG R A L Q R I 1 1 0 0 0 3 4 0 0 0 5 0 0 1 1 0 1 0 1 0 0 0 18 0 2219.1474 P13639;B4DPU3;Q6PK56;B4DRE8;B4DMC6 P13639 163 180 EEF2 Elongation factor 2 yes no 2 9.889E-31 167.73 4 0.56264 0.76607 9.215 3 Median 0.56264 0.76607 9.215 3 0 Median NaN NaN NaN 0 0 Median 102080000 72826000 29254000 102080000 72826000 29254000 0 0 0 688 1264 706 2596;2597;2598;2599 3843;3844;3845;3846;3847;3848;3849;3850 3843 8 ALLFIPR LAVKHFSVEGQLEFRALLFIPRRAPFDLFE VEGQLEFRALLFIPRRAPFDLFENKKKKNN R A L P R R 1 1 0 0 0 0 0 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 7 0 828.52216 A0A024RD80;P08238;B4DMA2;B4DGL0;Q6PK50 A0A024RD80 331 337 HSP90AB1 Heat shock protein HSP 90-beta yes no 2 0.0078198 120.76 2 1 0.43306 0.59481 141.71 3 Median 0.42323 0.57466 4.8749 2 0 Median 4.2156 6.6841 NaN 1 0 Median 165420000 92709000 72713000 121090000 84489000 36597000 44337000 8220300 36117000 689 312 707 2600;2601;2602 3851;3852;3853 3851 3 ALLFVPR LAVKHFSVEGQLEFRALLFVPRRAPFDLFE VEGQLEFRALLFVPRRAPFDLFENRKKKNN R A L P R R 1 1 0 0 0 0 0 0 0 0 2 0 0 1 1 0 0 0 0 1 0 0 7 0 814.50651 K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q96HX7 K9JA46 339 345 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 2 0.0045112 137.2 2 0.37953 0.51469 17.625 2 Median 0.37953 0.51469 17.625 2 0 Median NaN NaN NaN 0 0 Median 14458000 10674000 3784400 14458000 10674000 3784400 0 0 0 690 1155 708 2603;2604 3854;3855 3854 2 ALLGPALK PPGTGKTTSILCLARALLGPALKDAMLELN SILCLARALLGPALKDAMLELNASNDSMTD R A L L K D 2 0 0 0 0 0 0 1 0 0 3 1 0 0 1 0 0 0 0 0 0 0 8 0 781.50617 Q75MT5;B5BUD2;P35250 Q75MT5 92 99 RFC2 Replication factor C subunit 2 yes no 2 0.027891 52.683 1 0.38207 0.48587 NaN 1 Median 0.38207 0.48587 NaN 1 0 Median NaN NaN NaN 0 0 Median 5511600 3829300 1682300 5511600 3829300 1682300 0 0 0 691 898 709 2605 3856 3856 1 ALLLLLVGGVDQSPR ASIAPEIYGHEDVKKALLLLLVGGVDQSPR ALLLLLVGGVDQSPRGMKIRGNINICLMGD K A L P R G 1 1 0 1 0 1 0 2 0 0 5 0 0 0 1 1 0 0 0 2 0 0 15 0 1549.9192 B2RBA6;A0A0S2Z4A5;P33993;B3KUD7;B4DDF5;C6EMX8 B2RBA6 353 367 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 2 1.9883E-08 129.82 3 0.25196 0.35481 NaN 1 Median 0.25196 0.35481 NaN 1 0 Median NaN NaN NaN 0 0 Median 13245000 12822000 422900 13245000 12822000 422900 0 0 0 692 464 710 2606;2607;2608 3857;3858;3859 3859 3 ALLQDSAPQPALPQVQIPFPR YPFPPNPDMNPELRKALLQDSAPQPALPQV APQPALPQVQIPFPRRSRRLSKEGILPPSA K A L P R R 3 1 0 1 0 4 0 0 0 1 3 0 0 1 5 1 0 0 0 1 0 0 21 0 2285.2532 A0A1C7CYX1;A0A0A0MSU2;A0PJD3;A0A024R689;Q6PJG2;H7C1L3 A0A1C7CYX1 324 344 ELMSAN1;C14orf43 ELM2 and SANT domain-containing protein 1 yes no 2 9.1394E-19 131.66 4 0.64178 0.89146 18.15 4 Median 0.64178 0.89146 18.15 4 0 Median NaN NaN NaN 0 0 Median 10896000 6497200 4398500 10896000 6497200 4398500 0 0 0 693 523 711 2609;2610;2611;2612 3860;3861;3862;3863;3864;3865 3861 6 ALLQEFDNAVLSK QMMIDEFNKQSNAFKALLQEFDNAVLSKEN FKALLQEFDNAVLSKENHMQGKLNEKEKMI K A L S K E 2 0 1 1 0 1 1 0 0 0 3 1 0 1 0 1 0 0 0 1 0 0 13 0 1446.7718 H7BYN4;Q02241 H7BYN4 524 536 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 2.1945E-12 159.09 3 1 0.92034 1.1703 14.586 3 Median 0.884 1.1206 6.1369 2 0 Median 0.94433 1.4263 NaN 1 0 Median 57004000 39087000 17917000 42744000 30988000 11757000 14260000 8099300 6160500 694 1117 712 2613;2614;2615;2616 3866;3867;3868;3869;3870;3871 3866 6 ALLQEQFR GGGVTRVEGGFDQYRALLQEQFRREGFL__ GGFDQYRALLQEQFRREGFL__________ R A L F R R 1 1 0 0 0 2 1 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 1003.5451 B4DRU9;A0A0S2Z5L1;Q9NUQ8 B4DRU9 656 663 ABCF3 ATP-binding cassette sub-family F member 3 yes no 2 0.02639 54.157 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1026300 0 1026300 0 0 0 1026300 0 1026300 695 481 713 2617 3872 3872 1 ALLQQQPEDDSK TAIKRNENMAKGLQRALLQQQPEDDSKRSP LQRALLQQQPEDDSKRSPRPQDLIRLYDII R A L S K R 1 0 0 2 0 3 1 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 12 0 1370.6678 Q9UHB9;B4DVI7;Q96K98;Q96K97 Q9UHB9 405 416 SRP68 Signal recognition particle subunit SRP68 yes no 2 3.247E-05 89.029 1 1 1.0346 1.3826 60.1 2 Median 0.70626 0.90395 NaN 1 0 Median 1.5155 2.1148 NaN 1 0 Median 10389000 5182000 5206700 4579300 2681500 1897800 5809400 2500500 3308900 696 1784 714 2618;2619 3873;3874 3873 2 ALLQSSASR DLYKSEMEVQDAELKALLQSSASRKTQ___ QDAELKALLQSSASRKTQ____________ K A L S R K 2 1 0 0 0 1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 0 0 9 0 931.50869 A8K6Y1;Q6PIN5;A0A024RB85;Q9UQ80;Q05D08 A8K6Y1 356 364 PA2G4 Proliferation-associated protein 2G4 yes no 2 0.034375 42.869 1 0.89464 1.1899 NaN 1 Median 0.89464 1.1899 NaN 1 0 Median NaN NaN NaN 0 0 Median 2726600 1430700 1295900 2726600 1430700 1295900 0 0 0 697 264 715 2620 3875 3875 1 ALLSALELK EQLNDKLSKTEKESKALLSALELKKKEYEE TEKESKALLSALELKKKEYEELKEEKTLFS K A L L K K 2 0 0 0 0 0 1 0 0 0 4 1 0 0 0 1 0 0 0 0 0 0 9 0 956.59063 P49454 P49454 597 605 CENPF Centromere protein F yes yes 2 0.020027 52.482 1 1.1672 1.4812 NaN 1 Median 1.1672 1.4812 NaN 1 0 Median NaN NaN NaN 0 0 Median 7041300 3428700 3612700 7041300 3428700 3612700 0 0 0 698 1351 716 2621 3876 3876 1 ALLSASPEVVVAVGFPGAGK RTVSRSGPLCLPESRALLSASPEVVVAVGF SPEVVVAVGFPGAGKSTFL___________ R A L G K S 4 0 0 0 0 0 1 3 0 0 2 1 0 1 2 2 0 0 0 4 0 0 20 0 1868.0407 A0A0D9SFD6;M0R3C8;A0A0D9SFL2;M0QYH2;A0A1S5RA93;Q96T60 A0A0D9SFD6 233 252 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes no 2 1.1013E-11 125.03 2 0.71967 0.88644 18.46 2 Median 0.71967 0.88644 18.46 2 0 Median NaN NaN NaN 0 0 Median 2799900 1322100 1477800 2799900 1322100 1477800 0 0 0 699 435 717 2622;2623 3877;3878 3877 2 ALLTTNQLPQPDVFPLFK ALWDQLLEGRIKLQKALLTTNQLPQPDVFP TTNQLPQPDVFPLFKDKGGPEFSSALKNSH K A L F K D 1 0 1 1 0 2 0 0 0 0 4 1 0 2 3 0 2 0 0 1 0 0 18 0 2041.1248 Q9NY61 Q9NY61 247 264 AATF Protein AATF yes yes 2 7.9679E-40 184.31 4 0.94712 1.182 4.3894 3 Median 0.94712 1.182 4.3894 3 0 Median NaN NaN NaN 0 0 Median 155160000 85101000 70061000 155160000 85101000 70061000 0 0 0 700 1767 718 2624;2625;2626;2627 3879;3880;3881;3882;3883;3884;3885 3880 7 ALLVQVVNK TVAHELLCNKPEEEKALLVQVVNKLGDPQN KPEEEKALLVQVVNKLGDPQNRIATKASHL K A L N K L 1 0 1 0 0 1 0 0 0 0 2 1 0 0 0 0 0 0 0 3 0 0 9 0 982.61752 B2R5U7;Q03701 B2R5U7 382 390 CEBPZ CCAAT/enhancer-binding protein zeta no no 1;2 0.0016507 111.82 2 2 0.73588 0.9461 26.769 3 Median 0.94211 1.1694 33.671 2 0 Median 0.64188 0.9461 NaN 1 0 Median 26722000 16120000 10602000 16744000 9096500 7647300 9978100 7023200 2955000 701 693;1441 719 2628;2629;2630;2631 3886;3887;3888;3889 3887 4 ALLVTASQCQQPAENK QKHAEMVHTGLKLERALLVTASQCQQPAEN LLVTASQCQQPAENKLSDLLAPISEQIKEV R A L N K L 3 0 1 0 1 3 1 0 0 0 2 1 0 0 1 1 1 0 0 1 0 0 16 0 1756.8778 Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R1;Q5T0R9;B4DNY3;B4DNW7;B4DI38;D3DPU2;B2RDY9;Q01518 Q5T0R7 85 100 CAP1 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 1 yes no 2 6.5658E-05 105.65 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1264300 1264300 0 1264300 1264300 0 0 0 0 702 743 720 2632;2633 3890;3891 3891 2 ALMDLLQLTR HTMLGSPEQPGVIPRALMDLLQLTREEGAE GVIPRALMDLLQLTREEGAEGRPWALSVTM R A L T R E 1 1 0 1 0 1 0 0 0 0 4 0 1 0 0 0 1 0 0 0 0 0 10 0 1172.6587 Q14807;A0A024R632;B7Z9T5;H3BRB3;H3BTH5 Q14807 150 159 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 2.8705E-06 115.71 2 2 0.50167 0.72707 20.037 4 Median 0.55622 0.77178 18.012 2 0 Median 0.44465 0.6538 24.593 2 0 Median 40638000 25482000 15156000 8071600 4901800 3169800 32566000 20580000 11986000 703 1497 721;722 2634;2635;2636;2637 3892;3893;3894;3895;3896;3897;3898 3897 678 7 ALNFGLGRPLPLHFLR YTKHQIRQMEMKILRALNFGLGRPLPLHFL LNFGLGRPLPLHFLRRASKIGEVDVEQHTL R A L L R R 1 2 1 0 0 0 0 2 1 0 5 0 0 2 2 0 0 0 0 0 0 0 16 1 1820.0573 P14635;E9PC90;H1UBN2;Q9BWU8;Q9BWV0;Q9BWU9;Q9BPX9;H0YA62 P14635 292 307 CCNB1;CCNB1V G2/mitotic-specific cyclin-B1 yes no 3;4 6.5829E-06 67.115 7 3 0.84065 1.1272 14.229 8 Median 0.84065 1.1066 8.9358 6 0 Median 0.8101 1.3327 24.852 2 0 Median 381160000 208140000 173020000 85918000 44925000 40994000 295240000 163220000 132030000 704 1268 723 2638;2639;2640;2641;2642;2643;2644;2645;2646;2647 3899;3900;3901;3902;3903;3904;3905;3906;3907;3908;3909;3910;3911;3912 3905 14 ALNHEIEELEK IKLQEELSENDKKIKALNHEIEELEKRKDK KKIKALNHEIEELEKRKDKETGGILRSLED K A L E K R 1 0 1 0 0 0 4 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1323.667 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q7Z2X1;Q5T821 A0A024R158 276 286 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2;3 1.1519E-17 159.94 8 4 0.68751 0.95995 6.7556 12 Median 0.69876 0.91378 4.3775 8 0 Median 0.65725 1.0424 2.4881 4 0 Median 1261500000 746060000 515480000 860600000 497560000 363040000 400940000 248490000 152440000 705 50 724 2648;2649;2650;2651;2652;2653;2654;2655;2656;2657;2658;2659 3913;3914;3915;3916;3917;3918;3919;3920;3921;3922;3923;3924;3925;3926;3927;3928;3929;3930;3931;3932;3933;3934;3935 3926 23 ALNLAFR ENRRHPASYLVHGGKALNLAFRAWTRKEAL SYLVHGGKALNLAFRAWTRKEALPDHEDEI K A L F R A 2 1 1 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 7 0 803.46537 H0Y3N9;Q9UPP1;A0A024R9Y4;H0Y589;H0Y7M8;H7BZB7 H0Y3N9 303 309 PHF8 Histone lysine demethylase PHF8 yes no 2 0.00013634 106.29 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 706 1088 725 2660 3936 3936 1 ALNTLSSPGQSSFSHGTR IPGKTILENSVKHSKALNTLSSPGQSSFSH TLSSPGQSSFSHGTRNNSAKENMEKEKPVK K A L T R N 1 1 1 0 0 1 0 2 1 0 2 0 0 1 1 5 2 0 0 0 0 0 18 0 1845.8969 Q8WWQ0;Q9NWP3 Q8WWQ0 1554 1571 PHIP PH-interacting protein yes no 2;3 2.7384E-39 156.29 6 3 0.68276 1.0212 24.42 8 Median 0.87401 1.177 24.57 5 0 Median 0.54505 0.8701 9.6109 3 0 Plateau 245450000 139680000 105770000 159320000 86085000 73240000 86125000 53591000 32534000 707 1668 726 2661;2662;2663;2664;2665;2666;2667;2668;2669 3937;3938;3939;3940;3941;3942;3943;3944;3945;3946;3947;3948;3949;3950;3951;3952 3941 16 ALNVVQSVLQINLSNSTNR KKTAEEEELAEEKKKALNVVQSVLQINLSN VQSVLQINLSNSTNRGSVAAKKFKDIIHYD K A L N R G 1 1 4 0 0 2 0 0 0 1 3 0 0 0 0 3 1 0 0 3 0 0 19 0 2069.1229 F5H101;A0A024R250;Q76FK4;F8WE42;B4DM91;Q6AI50;A6H8Z4 F5H101 915 933 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 2 5.7347E-111 266.77 4 0.68848 0.93168 11.973 4 Median 0.68848 0.93168 11.973 4 0 Median NaN NaN NaN 0 0 Median 25452000 14405000 11047000 25452000 14405000 11047000 0 0 0 708 80 727 2670;2671;2672;2673 3953;3954;3955;3956;3957;3958;3959 3956 7 ALPASETPK AKSPNPSTPRGKKRKALPASETPKAAESET RGKKRKALPASETPKAAESETPGKSPEKKP K A L P K A 2 0 0 0 0 0 1 0 0 0 1 1 0 0 2 1 1 0 0 0 0 0 9 0 912.49165 O76021;Q32Q62;J3QSV6;A0PJ61 O76021 409 417 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 0.0020999 91.9 3 2 0.64225 0.83447 23.726 5 Median 0.69643 0.9126 5.2228 3 0 Median 0.36858 0.57854 3.6514 2 0 Median 460180000 289510000 170670000 321400000 188090000 133310000 138780000 101420000 37357000 709 1210 728 2674;2675;2676;2677;2678 3960;3961;3962;3963;3964;3965;3966;3967;3968;3969 3962 10 ALPAVQQNNLDEDLIRK DAAELVALAQAVNARALPAVQQNNLDEDLI PAVQQNNLDEDLIRKLAYVAAGDLAPINAF R A L R K L 2 1 2 2 0 2 1 0 0 1 3 1 0 0 1 0 0 0 0 1 0 0 17 1 1936.0378 A0A024R1A3;P22314 A0A024R1A3 369 385 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 3 0.0021162 60.541 1 0.75871 1.0299 NaN 1 Median 0.75871 1.0299 NaN 1 0 Median NaN NaN NaN 0 0 Median 4921500 2495100 2426400 4921500 2495100 2426400 0 0 0 710 55 729 2679 3970 3970 1 ALPCIVDVRDEQQISAAVEK TIYTAAEEIEAVGGKALPCIVDVRDEQQIS VDVRDEQQISAAVEKAVKKFGAYTIAKYGM K A L E K A 3 1 0 2 1 2 2 0 0 2 1 1 0 0 1 1 0 0 0 3 0 0 20 1 2240.1471 B2R923;A0A024R159;Q6YN16 B2R923 68 87 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 3 3.7379E-05 86.479 3 0.34064 0.4571 17.874 2 Median 0.34064 0.4571 17.874 2 0 Median NaN NaN NaN 0 0 Median 23370000 18795000 4575900 23370000 18795000 4575900 0 0 0 711 51 730 2680;2681;2682 3971;3972;3973 3971 3 ALPLIVGAQLIHADK ______________________________ ALPLIVGAQLIHADKLGEKVEDSTMPIRRT K A L D K L 3 0 0 1 0 1 0 1 1 2 3 1 0 0 1 0 0 0 0 1 0 0 15 0 1557.9243 Q5SSJ5;X6RGJ2;B0QZK9;B0QZK8 Q5SSJ5 15 29 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2;3 8.7614E-15 158.3 8 2 0.51837 0.64397 5.847 9 Median 0.51849 0.6479 5.7241 8 0 Median 0.37284 0.60316 NaN 1 0 Median 393950000 256170000 137780000 313720000 205770000 107960000 80233000 50406000 29826000 712 1565 731 2683;2684;2685;2686;2687;2688;2689;2690;2691;2692 3974;3975;3976;3977;3978;3979;3980;3981;3982;3983;3984;3985;3986;3987;3988;3989;3990;3991;3992 3977 19 ALPLPHFDTINLPEK KKIKELQKGEVPKFKALPLPHFDTINLPEK ALPLPHFDTINLPEKKVKNVTQIEPFCLET K A L E K K 1 0 1 1 0 0 1 0 1 1 3 1 0 1 3 0 1 0 0 0 0 0 15 0 1703.9247 Q643R0;Q9ULW0;B3KM90;Q96FC3 Q643R0 568 582 HCTP4;TPX2 Targeting protein for Xklp2 yes no 3 5.3753E-05 62.69 4 2 0.84346 1.0878 5.6805 6 Median 0.85006 1.1028 1.4346 4 0 Median 0.62269 0.98643 0.81433 2 0 Median 445780000 257740000 188040000 251630000 136270000 115360000 194150000 121470000 72681000 713 1581 732 2693;2694;2695;2696;2697;2698 3993;3994;3995;3996;3997;3998;3999;4000;4001;4002;4003 4001 11 ALPTQQGLQGR TAAAVAADKYHRGSKALPTQQGLQGRPAFP RGSKALPTQQGLQGRPAFPGYGVQDSSPYP K A L G R P 1 1 0 0 0 3 0 2 0 0 2 0 0 0 1 0 1 0 0 0 0 0 11 0 1167.636 Q7Z5J4;A8MXE8 Q7Z5J4 84 94 RAI1 Retinoic acid-induced protein 1 yes no 2 0.031628 39.305 1 0.86517 1.1033 NaN 1 Median NaN NaN NaN 0 0 Median 0.86517 1.1033 NaN 1 0 Median 3782500 2106100 1676400 0 0 0 3782500 2106100 1676400 714 1617 733 2699 4004 4004 1 ALQAAIQQLAEAQPEATAK FCLTLHRYRDAASRRALQAAIQQLAEAQPE AIQQLAEAQPEATAKNLLHSLQSSGIGSKA R A L A K N 7 0 0 0 0 4 2 0 0 1 2 1 0 0 1 0 1 0 0 0 0 0 19 0 1951.0375 E1NZA1;Q92616;B4DM32 E1NZA1 69 87 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 7.3888E-62 209.39 4 1 0.46742 0.59372 102.73 5 Median 0.44712 0.57801 18.129 4 0 Median 4.1327 5.7033 NaN 1 0 Median 25670000 12997000 12673000 20287000 12117000 8170300 5382700 879850 4502900 715 1000 734 2700;2701;2702;2703;2704 4005;4006;4007;4008;4009;4010;4011;4012;4013;4014;4015;4016;4017;4018 4012 14 ALQALEELR SRVKAEAEAAREKQRALQALEELRLQAEEA AREKQRALQALEELRLQAEEAERRLRQAEV R A L L R L 2 1 0 0 0 1 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1041.5819 Q15149 Q15149 1671 1679 PLEC Plectin yes yes 2 0.00017039 109.11 2 1 0.81341 1.0878 NaN 1 Median 0.81341 1.0878 NaN 1 0 Median NaN NaN NaN 0 0 Median 10543000 4364200 6178300 8697400 4364200 4333100 1845200 0 1845200 716 1507 735 2705;2706;2707 4019;4020;4021 4020 3 ALQDSAPDRPSPVER ASLNSQVWSALQMSKALQDSAPDRPSPVER ALQDSAPDRPSPVERIVSRDIARGYERIPI K A L E R I 2 2 0 2 0 1 1 0 0 0 1 0 0 0 3 2 0 0 0 1 0 0 15 1 1636.8169 A0A1B0GV09;Q9H9B1;A0A1B0GU48 A0A1B0GV09 963 977 EHMT1 Histone-lysine N-methyltransferase EHMT1 no no 3 0.0038612 33.265 2 0.88865 1.1801 2.1819 2 Median NaN NaN NaN 0 0 Median 0.88865 1.1801 2.1819 2 0 Median 8530100 4345600 4184500 0 0 0 8530100 4345600 4184500 717 518 736 2708;2709 4022;4023 4022 2 ALQEEIDRESGK KGNMDEAHIDQVRRKALQEEIDRESGKTEA RRKALQEEIDRESGKTEASETRKWTGTQFG K A L G K T 1 1 0 1 0 1 3 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 12 1 1373.6787 Q1ED39;H3BNU8;H3BPL4 Q1ED39 334 345 KNOP1 Lysine-rich nucleolar protein 1 yes no 2;3 6.2006E-11 155 2 2 0.89889 1.3823 34.695 4 Median 0.83655 1.1459 57.092 2 0 Median 0.89889 1.3823 0.11578 2 0 Median 18851000 9178000 9673500 5651400 2703800 2947600 13200000 6474200 6725900 718 1525 737 2710;2711;2712;2713 4024;4025;4026;4027 4024 4 ALQEFDLALR WFQTKEERKKEKIAKALQEFDLALRGKKKR EKIAKALQEFDLALRGKKKRKKFMKDAKKK K A L L R G 2 1 0 1 0 1 1 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 10 0 1174.6346 B7Z6D5;B3GQE6;Q96GQ7;Q53G15 B7Z6D5 636 645 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 7.4361E-06 134.77 5 2 0.77247 1.0507 6.8973 6 Median 0.77888 1.0507 5.4878 4 0 Median 0.62773 1.0086 9.5319 2 0 Median 231270000 125110000 106150000 124860000 61750000 63112000 106400000 63363000 43040000 719 750 738 2714;2715;2716;2717;2718;2719;2720 4028;4029;4030;4031;4032;4033;4034;4035;4036;4037 4032 10 ALQFLK TKGRMRIHCLENVDKALQFLKEQRVHLENM IHCLENVDKALQFLKEQRVHLENMGSHDIV K A L L K E 1 0 0 0 0 1 0 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 6 0 718.43776 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;F8W6C1;O15020;A4QPE4;B2RMN7;A0A024R674;Q59FP5;P11277 B2ZZ89 119 124 SPTBN1;SPTBN2;SPTB Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2;Spectrin beta chain, erythrocytic no no 2 0.034616 84.609 1 0.91866 1.1626 NaN 1 Median 0.91866 1.1626 NaN 1 0 Median NaN NaN NaN 0 0 Median 13936000 6691300 7244800 13936000 6691300 7244800 0 0 0 720 346 739 2721 4038 4038 1 ALQLEVDRLEELK AVATIMSGSKAKVRKALQLEVDRLEELKMQ RKALQLEVDRLEELKMQNMKKVIEAIRVEL K A L L K M 1 1 0 1 0 1 3 0 0 0 4 1 0 0 0 0 0 0 0 1 0 0 13 1 1554.8617 A0A024RC67;O43663 A0A024RC67 274 286 PRC1 Protein regulator of cytokinesis 1 yes no 2;3 0.0016411 105.2 2 2 0.6462 0.94405 21.453 2 Median 0.62388 0.81118 NaN 1 0 Median 0.66932 1.0987 NaN 1 0 Median 52324000 38148000 14176000 22176000 14147000 8029300 30148000 24002000 6146600 721 288 740 2722;2723;2724;2725 4039;4040;4041;4042;4043;4044 4042 6 ALQLILDVLNPETSEDENDRVVVTDDSDER ARSVFGHICSHLTPRALQLILDVLNPETSE DENDRVVVTDDSDERRLKGAEDKSEEGEDN R A L E R R 1 2 2 6 0 1 4 0 0 1 4 0 0 0 1 2 2 0 0 4 0 0 30 1 3398.6325 Q9BQG0;I3L1L3 Q9BQG0 685 714 MYBBP1A Myb-binding protein 1A yes no 3 4.4543E-12 90.836 3 0.8375 1.1372 4.7116 2 Median 0.8375 1.1372 4.7116 2 0 Median NaN NaN NaN 0 0 Median 15959000 8034600 7924800 15959000 8034600 7924800 0 0 0 722 1708 741 2726;2727;2728 4045;4046;4047;4048;4049;4050 4046 6 ALQLLQMYYEGR IAVHPDYQGMGYGSRALQLLQMYYEGRFPC GSRALQLLQMYYEGRFPCLEEKVLETPQEI R A L G R F 1 1 0 0 0 2 1 1 0 0 3 0 1 0 0 0 0 0 2 0 0 0 12 0 1483.7493 Q9H0A0;A0A087WV29 Q9H0A0 644 655 NAT10 N-acetyltransferase 10 yes no 2 7.12E-09 129.89 3 4 0.57786 0.90133 13.953 5 Median 0.83834 1.1713 NaN 1 0 Median 0.56258 0.87599 5.6188 4 0 Median 127990000 83462000 44532000 3658000 1131400 2526700 124340000 82331000 42005000 723 1730 742;743 2729;2730;2731;2732;2733;2734;2735 4051;4052;4053;4054;4055;4056;4057;4058;4059;4060;4061;4062 4056 786 12 ALQLLQMYYEGRFPCLEEK IAVHPDYQGMGYGSRALQLLQMYYEGRFPC LQMYYEGRFPCLEEKVLETPQEIHTVSSEA R A L E K V 1 1 0 0 1 2 3 1 0 0 4 1 1 1 1 0 0 0 2 0 0 0 19 1 2387.1654 Q9H0A0;A0A087WV29 Q9H0A0 644 662 NAT10 N-acetyltransferase 10 yes no 3 0.00011181 47.568 1 0.50062 0.7907 NaN 1 Median NaN NaN NaN 0 0 Median 0.50062 0.7907 NaN 1 0 Median 14012000 9465300 4546500 0 0 0 14012000 9465300 4546500 724 1730 744 2736 4063 4063 786 1 ALQQEQEIEQR LKVEHTSRLKAAFVKALQQEQEIEQRLLQQ AFVKALQQEQEIEQRLLQQGTAPAQAKAEP K A L Q R L 1 1 0 0 0 4 3 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 11 0 1370.679 A0A0U1RRM1;Q8WXI9;B3KSZ4;A0A0U1RR30;A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7;B4E0Q6 A0A024R7K7 465 475 GATAD2B;GATAD2A Transcriptional repressor p66-beta;Transcriptional repressor p66-alpha no no 2 2.0189E-46 208.25 4 4 0.76407 1.0317 29.116 6 Median 0.74926 1.0188 11.03 4 0 Median 1.1676 1.6397 13.759 2 0 Median 136640000 68429000 68214000 102850000 59721000 43131000 33790000 8707700 25083000 725 179;488 745 2737;2738;2739;2740;2741;2742;2743;2744 4064;4065;4066;4067;4068;4069;4070;4071;4072;4073;4074;4075;4076;4077;4078;4079;4080;4081;4082 4073 19 ALQQGLVGLELK GLVDLARGQLLPVSKALQQGLVGLELKEKL VSKALQQGLVGLELKEKLLAAERATTGYPD K A L L K E 1 0 0 0 0 2 1 2 0 0 4 1 0 0 0 0 0 0 0 1 0 0 12 0 1267.75 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 98 109 EPPK1 Epiplakin no no 2 9.1923E-14 103.7 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 726 373;1386 746 2745 4083 4083 1 ALQQYTLEPSEK YILNGLTVSIPGLERALQQYTLEPSEKPFD LERALQQYTLEPSEKPFDLKSVPLATAPMA R A L E K P 1 0 0 0 0 2 2 0 0 0 2 1 0 0 1 1 1 0 1 0 0 0 12 0 1405.7089 Q9Y678;B3KW21;Q8WUI6 Q9Y678 561 572 COPG1;COPG Coatomer subunit gamma-1 yes no 2 0.0025932 61.353 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1900700 0 1900700 0 0 0 1900700 0 1900700 727 1832 747 2746 4084 4084 1 ALQRPSAAAPQAENGPAAAPAVAAPAATEAPK GARGKGRTQLSLLPRALQRPSAAAPQAENG AAPAVAAPAATEAPKMSNADFAKLFLRK__ R A L P K M 14 1 1 0 0 2 2 1 0 0 1 1 0 0 6 1 1 0 0 1 0 0 32 1 2964.5417 Q15020;B4DYA2 Q15020 919 950 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 3 0.026855 14.374 1 0.87129 1.0983 NaN 1 Median 0.87129 1.0983 NaN 1 0 Median NaN NaN NaN 0 0 Median 3222300 1912100 1310300 3222300 1912100 1310300 0 0 0 728 1501 748 2747 4085 4085 1 ALQSGQCAGAALDVFTEEPPRDR NCARGGIVDEGALLRALQSGQCAGAALDVF GAALDVFTEEPPRDRALVDHENVISCPHLG R A L D R A 4 2 0 2 1 2 2 2 0 0 2 0 0 1 2 1 1 0 0 1 0 0 23 1 2487.1812 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2;Q8N5M8 O43175 248 270 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 3 1.2332E-23 131.48 4 0.60908 0.81904 6.9903 4 Median 0.60908 0.81904 6.9903 4 0 Median NaN NaN NaN 0 0 Median 91288000 47467000 43821000 91288000 47467000 43821000 0 0 0 729 1182 749 2748;2749;2750;2751 4086;4087;4088;4089;4090;4091;4092;4093;4094 4091 9 ALQSVGQIVGEVLK KELTKQYEKSENDLKALQSVGQIVGEVLKQ KALQSVGQIVGEVLKQLTEEKFIVKATNGP K A L L K Q 1 0 0 0 0 2 1 2 0 1 2 1 0 0 0 1 0 0 0 3 0 0 14 0 1439.8348 V9HW24;A0A087X2I1;P62333;H0YJC0;H0YJE9;H0YJT1 V9HW24 49 62 HEL-S-73;PSMC6 26S protease regulatory subunit 10B yes no 2 0.0084571 39.58 1 0.37335 0.47642 NaN 1 Median 0.37335 0.47642 NaN 1 0 Median NaN NaN NaN 0 0 Median 14748000 10864000 3884400 14748000 10864000 3884400 0 0 0 730 379 750 2752 4095 4095 1 ALQSYYEAK LEEAKMRRAELQRARALQSYYEAKARREKK ELQRARALQSYYEAKARREKKIKSKKYHKV R A L A K A 2 0 0 0 0 1 1 0 0 0 1 1 0 0 0 1 0 0 2 0 0 0 9 0 1071.5237 Q9BVJ6;B4E343;X6RJY0;Q08E77;A0A024RDV0;Q5TAP6 Q9BVJ6 232 240 UTP14A;UTP14C;hCG_1811699 U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C yes no 2 0.00010884 83.265 3 1 0.94092 1.1876 NaN 1 Median 0.94092 1.1876 NaN 1 0 Median NaN NaN NaN 0 0 Median 17308000 5403000 11905000 11173000 5403000 5770500 6134700 0 6134700 731 1719 751 2753;2754;2755;2756 4096;4097;4098;4099 4096 4 ALQTQNSEIVK AIPHLRRRRGRLPRRALQTQNSEIVKDDEG LPRRALQTQNSEIVKDDEGKEDYQFDELNT R A L V K D 1 0 1 0 0 2 1 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 11 0 1229.6616 B4DZG1;Q9Y483;Q96G26 B4DZG1 405 415 MTF2 Metal-response element-binding transcription factor 2 yes no 2 0.023871 47.187 2 0.50509 0.66993 NaN 1 Median NaN NaN NaN 0 0 Median 0.50509 0.66993 NaN 1 0 Median 4543400 1439500 3103900 0 0 0 4543400 1439500 3103900 732 878 752 2757;2758 4100;4101 4100 2 ALQYACGNALVCDNVEDARR LVIDVIRYEPPHIKKALQYACGNALVCDNV CGNALVCDNVEDARRIAFGGHQRHKTVALD K A L R R I 4 2 2 2 2 1 1 1 0 0 2 0 0 0 0 0 0 0 1 2 0 0 20 1 2294.0532 Q14683;G8JLG1;Q6P2R1;Q6MZR8;A8K7A6;B7Z709 Q14683 608 627 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3 9.8671E-19 125.52 4 0.50463 0.67244 10.261 4 Median 0.50463 0.67244 10.261 4 0 Median NaN NaN NaN 0 0 Median 45960000 29899000 16061000 45960000 29899000 16061000 0 0 0 733 1492 753 2759;2760;2761;2762 4102;4103;4104;4105;4106;4107;4108;4109;4110 4107 9 ALQYFHPK TGKIVVGHAIHNDFKALQYFHPKSLTRDTS AIHNDFKALQYFHPKSLTRDTSHIPPLNRK K A L P K S 1 0 0 0 0 1 0 0 1 0 1 1 0 1 1 0 0 0 1 0 0 0 8 0 1002.5287 Q9H9L3 Q9H9L3 270 277 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 2 0.01155 70.268 1 1.5382 1.9558 NaN 1 Median 1.5382 1.9558 NaN 1 0 Median NaN NaN NaN 0 0 Median 12912000 4652300 8259200 12912000 4652300 8259200 0 0 0 734 1746 754 2763 4111 4111 1 ALRPPTSPGVFGALQNFK KFSFSFSNKKLLGSKALRPPTSPGVFGALQ PPTSPGVFGALQNFKEDKPKPVRDEYEYVS K A L F K E 2 1 1 0 0 1 0 2 0 0 2 1 0 2 3 1 1 0 0 1 0 0 18 1 1899.0367 O75151;Q8N359;B4DH04 O75151 649 666 PHF2 Lysine-specific demethylase PHF2 yes no 3 0.00036255 96.435 5 1 1.3437 1.6986 43.809 3 Median 1.4162 1.8577 12.656 2 0 Median 0.56598 0.88384 NaN 1 0 Median 23531000 15230000 8300500 17148000 11756000 5391100 6383400 3474000 2909400 735 1196 755 2764;2765;2766;2767;2768;2769 4112;4113;4114;4115;4116;4117 4115 6 ALRTDYNASVSVPDSSGPER KNAGAVIGKGGKNIKALRTDYNASVSVPDS YNASVSVPDSSGPERILSISADIETIGEIL K A L E R I 2 2 1 2 0 0 1 1 0 0 1 0 0 0 2 4 1 0 1 2 0 0 20 1 2120.0134 A0A024R228;P61978;B4DUQ1;Q5EC54;Q5T6W2 A0A024R228 67 86 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 3 0.0023547 48.968 1 0.51639 0.69875 NaN 1 Median 0.51639 0.69875 NaN 1 0 Median NaN NaN NaN 0 0 Median 2474900 1587100 887750 2474900 1587100 887750 0 0 0 736 77 756 2770 4118 4118 1 ALRYPMAVGLNK ______________________________ ______________________________ M A L N K G 2 1 1 0 0 0 0 1 0 0 2 1 1 0 1 0 0 0 1 1 0 0 12 1 1331.7384 Q9Y3U8;J3QSB5;J3KTD3 Q9Y3U8 2 13 RPL36 60S ribosomal protein L36 yes no 3 0.029806 17.587 1 0.73623 0.95723 NaN 1 Median 0.73623 0.95723 NaN 1 0 Median NaN NaN NaN 0 0 Median 10898000 4965500 5932600 10898000 4965500 5932600 0 0 0 737 1821 757 2771 4119 4119 1 ALSAIADLLTNEHER WTYGRYIRSALRQEKALSAIADLLTNEHER ALSAIADLLTNEHERVVKAASGALRNLAVD K A L E R V 3 1 1 1 0 0 2 0 1 1 3 0 0 0 0 1 1 0 0 0 0 0 15 0 1651.8529 Q7KZJ3;A0A024R4Z0;A0A024R4Y7;Q96FS1;Q68DU0;C9JZR2;O60716 Q7KZJ3 382 396 CTNND1;DKFZp781O2021 Catenin delta-1 yes no 3 0.012758 63.754 2 0.38188 0.51679 NaN 1 Median 0.38188 0.51679 NaN 1 0 Median NaN NaN NaN 0 0 Median 9314000 7012900 2301200 9314000 7012900 2301200 0 0 0 738 130 758 2772;2773 4120;4121 4120 2 ALSLAR ERDRAEAEAREKETKALSLARALEEAMEQK AEAREKETKALSLARALEEAMEQKAELERL K A L A R A 2 1 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 6 0 629.38606 A0A024R1N1;P35579;Q7Z7R0;O14729;O14794;Q68D89;Q66K75;Q2PS10;A0A0U4BW16;P35580 A0A024R1N1 1478 1483 MYH9;DKFZp686D10126;MYH11;MYH10 Myosin-9;Myosin-10 no no 2 0.019652 168.62 4 0.9461 1.2884 9.2696 4 Median 0.9461 1.2884 9.2696 4 0 Median NaN NaN NaN 0 0 Median 130610000 64266000 66349000 130610000 64266000 66349000 0 0 0 739 61;490;1320 759 2774;2775;2776;2777 4122;4123;4124;4125 4123 4 ALSLLSLPPK LVLSKPALEEEEAPRALSLLSLPPKKRSIL EEAPRALSLLSLPPKKRSILGLGQARPLEF R A L P K K 1 0 0 0 0 0 0 0 0 0 4 1 0 0 2 2 0 0 0 0 0 0 10 0 1037.6485 Q4VC44;I3L188 Q4VC44 249 258 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 2 0.013719 82.645 2 1 0.26786 0.36726 NaN 1 Median NaN NaN NaN 0 0 Median 0.26786 0.36726 NaN 1 0 Median 3591300 2355200 1236100 0 0 0 3591300 2355200 1236100 740 1536 760 2778;2779;2780 4126;4127;4128 4128 3 ALSLLTLLNVYQK KFQKKLKELGRLNAKALSLLTLLNVYQKKH AKALSLLTLLNVYQKKHLVEILSYHNCDSQ K A L Q K K 1 0 1 0 0 1 0 0 0 0 5 1 0 0 0 1 1 0 1 1 0 0 13 0 1474.8759 Q9UK61;A0A024R363;A0A087X0F1 Q9UK61 1385 1397 FAM208A;C3orf63 Protein FAM208A yes no 2 4.3119E-37 200.6 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1986300 1986300 0 1986300 1986300 0 0 0 0 741 1787 761 2781;2782 4129;4130 4129 2 ALSSDSILSPAPDAR TPDWVSEGPQPGLRRALSSDSILSPAPDAR ALSSDSILSPAPDARAADPAPEVRKVNRIP R A L A R A 3 1 0 2 0 0 0 0 0 1 2 0 0 0 2 4 0 0 0 0 0 0 15 0 1498.7627 Q8IVT2 Q8IVT2 392 406 MISP Mitotic interactor and substrate of PLK1 yes yes 2 1.1096E-07 104.87 3 0.62817 0.87547 12.326 3 Median 0.62817 0.87547 12.326 3 0 Median NaN NaN NaN 0 0 Median 12193000 6990400 5203000 12193000 6990400 5203000 0 0 0 742 1624 762 2783;2784;2785 4131;4132;4133;4134;4135;4136;4137;4138;4139;4140;4141;4142 4140 12 ALSSLELSSHLAK ILTSPCSPEIRVYTKALSSLELSSHLAKDL TKALSSLELSSHLAKDLLVLLNEILEQVKD K A L A K D 2 0 0 0 0 0 1 0 1 0 4 1 0 0 0 4 0 0 0 0 0 0 13 0 1354.7456 Q9BPX3;Q6NUR1 Q9BPX3 853 865 NCAPG Condensin complex subunit 3 yes no 2;3 2.0498E-16 169.65 7 4 0.69427 0.88795 7.365 10 Median 0.71854 0.9207 2.9393 6 0 Median 0.50773 0.80012 4.7271 4 0 Median 459550000 271370000 188180000 293970000 161190000 132780000 165580000 110180000 55403000 743 1706 763 2786;2787;2788;2789;2790;2791;2792;2793;2794;2795;2796 4143;4144;4145;4146;4147;4148;4149;4150;4151;4152;4153;4154;4155;4156;4157 4144 15 ALSSSADDASLVNASISSSVK ATFCSQRDGDASLNKALSSSADDASLVNAS DDASLVNASISSSVKATSPVKSTTSITDAK K A L V K A 4 0 1 2 0 0 0 0 0 1 2 1 0 0 0 8 0 0 0 2 0 0 21 0 2007.996 B4DSL6;A8K5D9;A0A024RA49;Q9NQW6 B4DSL6 149 169 ANLN Actin-binding protein anillin yes no 2 5.8771E-07 109.48 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 748870 0 748870 748870 0 748870 0 0 0 744 235 764 2797 4158 4158 1 ALSSSVIR EAEREKKRLERAKRRALSSSVIRELKEQYS LERAKRRALSSSVIRELKEQYSDAPEEIRD R A L I R E 1 1 0 0 0 0 0 0 0 1 1 0 0 0 0 3 0 0 0 1 0 0 8 0 831.48142 Q8NEJ9;H0YJ17 Q8NEJ9 200 207 NGDN Neuroguidin yes no 2 0.044757 43.808 1 0.72263 0.98369 NaN 1 Median 0.72263 0.98369 NaN 1 0 Median NaN NaN NaN 0 0 Median 12961000 7010900 5950600 12961000 7010900 5950600 0 0 0 745 1654 765 2798 4159 4159 1 ALSTIVSQR ______________________________ ______________________________ M A L Q R K 1 1 0 0 0 1 0 0 0 1 1 0 0 0 0 2 1 0 0 1 0 0 9 0 973.55564 H0UI56;Q5EE01;A0A0A0MRK5 H0UI56 2 10 C6orf173;CENPW Centromere protein W yes no 2 0.024288 49.418 1 0.63494 0.84142 NaN 1 Median 0.63494 0.84142 NaN 1 0 Median NaN NaN NaN 0 0 Median 12454000 7291000 5162800 12454000 7291000 5162800 0 0 0 746 1086 766 2799 4160 4160 1 ALSTSCLVCCLCQNPANFK LPLSSTMHLGPVVSKALSTSCLVCCLCQNP SCLVCCLCQNPANFKDLGDLCGPYYPEHCL K A L F K D 2 0 2 0 4 1 0 0 0 0 3 1 0 1 1 2 1 0 0 1 0 0 19 0 2242.0003 Q7Z5J4 Q7Z5J4 1679 1697 RAI1 Retinoic acid-induced protein 1 yes yes 2 5.2805E-62 212.09 2 0.72192 0.92317 NaN 1 Median 0.72192 0.92317 NaN 1 0 Median NaN NaN NaN 0 0 Median 3691100 3148700 542370 3691100 3148700 542370 0 0 0 747 1617 767 2800;2801 4161;4162;4163 4162 3 ALSVGNIDDALQCYSEAIK ______________________________ GNIDDALQCYSEAIKLDPHNHVLYSNRSAA K A L I K L 3 0 1 2 1 1 1 1 0 2 2 1 0 0 0 2 0 0 1 1 0 0 19 0 2065.999 V9HW72;A8K690;P31948;F5GXD8;F5H783 V9HW72 14 32 HEL-S-94n;STIP1 Stress-induced-phosphoprotein 1 yes no 2 1.2393E-18 142.38 4 0.64126 0.82049 3.2304 3 Plateau 0.64126 0.82049 3.2304 3 0 Plateau NaN NaN NaN 0 0 Median 8315200 5404000 2911200 8315200 5404000 2911200 0 0 0 748 622 768 2802;2803;2804;2805 4164;4165;4166;4167;4168;4169;4170;4171 4167 8 ALSVYGLPIR FIHDSLPPVLTDRERALSVYGLPIRWEAGE TDRERALSVYGLPIRWEAGEPVNVGAQLTT R A L I R W 1 1 0 0 0 0 0 1 0 1 2 0 0 0 1 1 0 0 1 1 0 0 10 0 1087.639 A0A0A8K8C0;Q9H6W3 A0A0A8K8C0 520 529 URLC2;NO66 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 yes no 2 0.02689 50.607 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1385500 1385500 0 0 0 0 1385500 1385500 0 749 411 769 2806 4172 4172 1 ALTALFK GVMVPAPIQDLEALRALTALFKEQRNRETA IQDLEALRALTALFKEQRNRETAPRTIFQR R A L F K E 2 0 0 0 0 0 0 0 0 0 2 1 0 1 0 0 1 0 0 0 0 0 7 0 762.46398 Q9UBB4;Q7Z524 Q9UBB4 28 34 ATXN10 Ataxin-10 yes no 2 0.050048 92.191 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 618120 618120 0 618120 618120 0 0 0 0 750 1780 770 2807 4173 4173 1 ALTALGLAVPR DSLRELLRLPLRYPRALTALGLAVPRGVLL RYPRALTALGLAVPRGVLLAGPPGVGKTQL R A L P R G 3 1 0 0 0 0 0 1 0 0 3 0 0 0 1 0 1 0 0 1 0 0 11 0 1080.6655 Q9BVQ7 Q9BVQ7 225 235 SPATA5L1 Spermatogenesis-associated protein 5-like protein 1 yes yes 2 1.3066E-05 105.52 2 1 0.47493 0.64737 NaN 1 Median 0.47493 0.64737 NaN 1 0 Median NaN NaN NaN 0 0 Median 4882300 1602000 3280300 3104000 1602000 1502000 1778300 0 1778300 751 1720 771 2808;2809;2810 4174;4175;4176;4177 4175 4 ALTHIDHSLSR VQGKKGEDVLGSVRRALTHIDHSLSRQNCP SVRRALTHIDHSLSRQNCPFLAGETESLAD R A L S R Q 1 1 0 1 0 0 0 0 2 1 2 0 0 0 0 2 1 0 0 0 0 0 11 0 1248.6575 A8K492;P56192;A0A024RBA2;F5H2V6 A8K492 120 130 MARS Methionine--tRNA ligase, cytoplasmic yes no 3 0.014677 87.568 1 0.55024 0.75523 NaN 1 Median 0.55024 0.75523 NaN 1 0 Median NaN NaN NaN 0 0 Median 7361700 4703200 2658500 7361700 4703200 2658500 0 0 0 752 602 772 2811 4178 4178 1 ALTLGALTLPLAR PQSQELDVQVKDDSRALTLGALTLPLARLL SRALTLGALTLPLARLLTAPELILDQWFQL R A L A R L 3 1 0 0 0 0 0 1 0 0 5 0 0 0 1 0 2 0 0 0 0 0 13 0 1308.8129 B3KY56;B3KMV5;A0A024RB17;A0A024RB16;Q9BSJ8 B3KY56 505 517 FAM62A;ESYT1 Extended synaptotagmin-1 yes no 2 1.4489E-08 123.51 4 0.60499 0.83323 13.143 4 Median 0.60499 0.83323 13.143 4 0 Median NaN NaN NaN 0 0 Median 19362000 11580000 7781900 19362000 11580000 7781900 0 0 0 753 256 773 2812;2813;2814;2815 4179;4180;4181;4182;4183;4184;4185;4186;4187 4184 9 ALTQTGGPHVK GVFREATTEFSVDARALTQTGGPHVKARVA VDARALTQTGGPHVKARVANPSGNLTETYV R A L V K A 1 0 0 0 0 1 0 2 1 0 1 1 0 0 1 0 2 0 0 1 0 0 11 0 1107.6037 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1284 1294 FLNA;FLJ00119 Filamin-A yes no 2;3 1.0841E-09 164.46 5 2 0.92301 1.1454 48.625 7 Median 0.8764 1.1065 11.644 5 0 Median 2.1061 2.7863 7.6447 2 0 Median 183700000 100850000 82852000 178020000 98948000 79072000 5678100 1898700 3779500 754 1287 774 2816;2817;2818;2819;2820;2821;2822 4188;4189;4190;4191;4192;4193;4194;4195;4196;4197 4190 10 ALTSEIALLQSR STLNSGKKSLETEHKALTSEIALLQSRLKT EHKALTSEIALLQSRLKTEGSDLCDRVSEM K A L S R L 2 1 0 0 0 1 1 0 0 1 3 0 0 0 0 2 1 0 0 0 0 0 12 0 1300.7351 Q96HX3;Q6IBR0;Q53EP4;P04843;B7Z4L4;B4DL99;B4DNJ5 Q96HX3 486 497 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 0.00013305 125.74 3 0.56589 0.77296 NaN 1 Median 0.56589 0.77296 NaN 1 0 Median NaN NaN NaN 0 0 Median 10527000 9117300 1410000 10527000 9117300 1410000 0 0 0 755 1233 775 2823;2824;2825 4198;4199;4200;4201 4199 4 ALTVAHELLCNKPEEEK LETLSHDTLVTTKTRALTVAHELLCNKPEE TVAHELLCNKPEEEKALLVQVVNKLGDPQN R A L E K A 2 0 1 0 1 0 4 0 1 0 3 2 0 0 1 0 1 0 0 1 0 0 17 1 1979.9986 B2R5U7;Q03701 B2R5U7 365 381 CEBPZ CCAAT/enhancer-binding protein zeta no no 3 2.0344E-25 117.13 3 0.7906 0.98152 25.844 3 Median 0.7906 0.98152 25.844 3 0 Median NaN NaN NaN 0 0 Median 49344000 26047000 23297000 49344000 26047000 23297000 0 0 0 756 693;1441 776 2826;2827;2828 4202;4203;4204;4205 4204 4 ALTVPELTQQMFDAK PGFAPLTSRGSQQYRALTVPELTQQMFDAK ALTVPELTQQMFDAKNMMAACDPRHGRYLT R A L A K N 2 0 0 1 0 2 1 0 0 0 2 1 1 1 1 0 2 0 0 1 0 0 15 0 1690.86 Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;Q96HX0;B4DFH6;Q2NKY5;P04350;B4DJ43;B4DE77;Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q53G92;Q3ZCR3 Q8IZ29 283 297 TUBB2C;TUBB4B;TUBB6;TUBB4A;TUBB3 Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain no no 2 3.6105E-07 128.36 3 1 1.1975 0.55151 127.02 3 Plateau 0.44145 0.55032 0.30328 2 0 Median 3.222 4.9666 NaN 1 0 Median 52699000 27523000 25177000 29919000 21172000 8746900 22781000 6350800 16430000 757 1423;1230;416;1528 777;778 2829;2830;2831;2832 4206;4207;4208;4209;4210 4207 134 5 ALTVPELTQQMFDSK PGFAPLTSRGSQQYRALTVPELTQQMFDSK ALTVPELTQQMFDSKNMMAACDPRHGRYLT R A L S K N 1 0 0 1 0 2 1 0 0 0 2 1 1 1 1 1 2 0 0 1 0 0 15 0 1706.8549 Q9BVA1;Q13885;A0A024QZU2;O43209;B7Z4N1;Q9UGA2 Q9BVA1 283 297 TUBB2B;TUBB2A;DKFZp566F223 Tubulin beta-2B chain;Tubulin beta-2A chain yes no 2 0.0011764 48.741 1 2.9519 4.4323 NaN 1 Median NaN NaN NaN 0 0 Median 2.9519 4.4323 NaN 1 0 Median 19767000 5187700 14580000 0 0 0 19767000 5187700 14580000 758 1479 779 2833 4211 4211 1 ALTVPELTQQVFDAK PGFAPLTSRGSQQYRALTVPELTQQVFDAK ALTVPELTQQVFDAKNMMAACDPRHGRYLT R A L A K N 2 0 0 1 0 2 1 0 0 0 2 1 0 1 1 0 2 0 0 2 0 0 15 0 1658.8879 Q5JP53;Q5SU16;P07437;B7ZAF0;B4DY90;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;B4DMU8;Q96B85;B4DXZ5;Q1KSF8 Q5JP53 265 279 TUBB;XTP3TPATP1 Tubulin beta chain yes no 2 3.9461E-50 220.5 6 2 0.41175 0.54501 120.49 7 Median 0.41135 0.5437 13.519 5 0 Median 3.9387 6.1905 8.41 2 0 Median 2509800000 1248900000 1260800000 1478800000 1042400000 436450000 1031000000 206590000 824390000 759 1241 780 2834;2835;2836;2837;2838;2839;2840;2841 4212;4213;4214;4215;4216;4217;4218;4219;4220;4221;4222;4223 4212 11 ALVADSHPESER EDYAETVHQLSKTSRALVADSHPESERISM TSRALVADSHPESERISMRQSKVDKLYAGL R A L E R I 2 1 0 1 0 0 2 0 1 0 1 0 0 0 1 2 0 0 0 1 0 0 12 0 1309.6262 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24 B2ZZ89 1657 1668 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 1.4192E-08 139.38 6 0.80743 1.0788 9.8983 6 Median 0.80743 1.0788 9.8983 6 0 Median NaN NaN NaN 0 0 Median 74029000 42188000 31841000 74029000 42188000 31841000 0 0 0 760 346 781 2842;2843;2844;2845;2846;2847 4224;4225;4226;4227;4228;4229;4230;4231;4232;4233 4231 10 ALVATPGK KAVTTPGKKGATPGKALVATPGKKGAAIPA KGATPGKALVATPGKKGAAIPAKGAKNGKN K A L G K K 2 0 0 0 0 0 0 1 0 0 1 1 0 0 1 0 1 0 0 1 0 0 8 0 755.45414 B3KTP9;A0A024R4A0;P19338;Q9BQ02;C9JYW2;C9JLB1;C9J1H7;C9JWL1 B3KTP9 40 47 NCL Nucleolin yes no 2 0.0092442 102.71 3 1 0.94639 1.1831 14.173 4 Median 1.0029 1.271 11.153 3 0 Median 0.67923 1.0002 NaN 1 0 Median 62016000 32887000 29128000 53655000 27710000 25945000 8360500 5176600 3183900 761 119 782 2848;2849;2850;2851 4234;4235;4236;4237 4236 4 ALVATPGKK KAVTTPGKKGATPGKALVATPGKKGAAIPA GATPGKALVATPGKKGAAIPAKGAKNGKNA K A L K K G 2 0 0 0 0 0 0 1 0 0 1 2 0 0 1 0 1 0 0 1 0 0 9 1 883.5491 B3KTP9;A0A024R4A0;P19338;Q9BQ02;C9JYW2;C9JLB1;C9J1H7;C9JWL1 B3KTP9 40 48 NCL Nucleolin yes no 2 0.0033587 106.36 2 2 0.78099 1.0962 9.928 4 Median 0.96927 1.1904 8.3589 2 0 Median 0.64445 1.0333 5.0523 2 0 Median 109410000 58917000 50489000 60752000 29725000 31027000 48654000 29192000 19462000 762 119 783 2852;2853;2854;2855 4238;4239;4240;4241;4242 4238 4 ALVAVLLSR HPHRLTGNKVQQYHRALVAVLLSRTWHVRR VQQYHRALVAVLLSRTWHVRRQAQQTVRKL R A L S R T 2 1 0 0 0 0 0 0 0 0 3 0 0 0 0 1 0 0 0 2 0 0 9 0 940.60695 E1NZA1;Q92616;A0A024RBS1;B4DM32 E1NZA1 568 576 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 3.7454E-06 169.06 4 0.36538 0.51224 34.355 3 Median 0.36538 0.51224 34.355 3 0 Median NaN NaN NaN 0 0 Median 19451000 14554000 4897700 19451000 14554000 4897700 0 0 0 763 1000 784 2856;2857;2858;2859 4243;4244;4245;4246 4244 4 ALVAYYQK GHVAQIYAIRQSISKALVAYYQKYVDEASK IRQSISKALVAYYQKYVDEASKKEIKDILI K A L Q K Y 2 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 2 1 0 0 8 0 954.51747 P62249;M0R210;M0R3H0;A0A087WZ27;M0R1M5;M0QX76 P62249 91 98 RPS16;ZNF90 40S ribosomal protein S16 yes no 2 0.00047933 127.66 3 2 0.83994 1.115 13.234 5 Median 0.83994 1.1102 3.0127 3 0 Median 0.86499 1.3769 6.6912 2 0 Median 730810000 396940000 333860000 653900000 356040000 297860000 76902000 40903000 35999000 764 1400 785 2860;2861;2862;2863;2864 4247;4248;4249;4250;4251;4252;4253 4249 7 ALVDGPCTQVR AGKLVAIVDVIDQNRALVDGPCTQVRRQAM DQNRALVDGPCTQVRRQAMPFKCMQLTDFI R A L V R R 1 1 0 1 1 1 0 1 0 0 1 0 0 0 1 0 1 0 0 2 0 0 11 0 1214.6078 A8K3Q9;E7EPB3;A0PJ62;B7Z6S8;A8K7N0;Q6IPH7;P50914 A8K3Q9 36 46 RPL14 60S ribosomal protein L14 no no 2 2.7211E-14 172.98 6 4 0.68395 0.94686 5.7384 9 Median 0.68742 0.95205 6.9766 5 0 Median 0.60887 0.89665 4.5098 4 0 Median 2543900000 1535800000 1008100000 2284700000 1367500000 917190000 259130000 168240000 90891000 765 596;532 786 2865;2866;2867;2868;2869;2870;2871;2872;2873;2874 4254;4255;4256;4257;4258;4259;4260;4261;4262;4263;4264;4265;4266;4267;4268;4269 4255 16 ALVDHENVISCPHLGASTK GAALDVFTEEPPRDRALVDHENVISCPHLG HENVISCPHLGASTKEAQSRCGEEIAVQFV R A L T K E 2 0 1 1 1 0 1 1 2 1 2 1 0 0 1 2 1 0 0 2 0 0 19 0 2047.0157 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2;Q8N5M8 O43175 271 289 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 3;4 6.5292E-05 50.397 3 0.67077 0.8473 12.224 3 Median 0.67077 0.8473 12.224 3 0 Median NaN NaN NaN 0 0 Median 120500000 66012000 54487000 120500000 66012000 54487000 0 0 0 766 1182 787 2875;2876;2877 4270;4271;4272;4273;4274 4273 5 ALVDILSEVSK ALAQYQNHLQEQPRKALVDILSEVSKATLQ QPRKALVDILSEVSKATLQEILPEVLKADL K A L S K A 1 0 0 1 0 0 1 0 0 1 2 1 0 0 0 2 0 0 0 2 0 0 11 0 1172.6653 Q9BQG0;I3L1L3;B4DZZ1 Q9BQG0 180 190 MYBBP1A Myb-binding protein 1A yes no 2 1.9482E-06 128.86 4 2 0.71814 0.95606 11.068 6 Median 0.76931 0.91488 5.3033 4 0 Linear 0.71285 1.1108 4.3935 2 0 Median 165940000 94551000 71384000 110530000 61308000 49226000 55402000 33243000 22159000 767 1708 788 2878;2879;2880;2881;2882;2883 4275;4276;4277;4278;4279;4280;4281;4282;4283;4284;4285;4286 4280 12 ALVDPGPDFVVCDEGHILK GRNVKSRKLKEIFNKALVDPGPDFVVCDEG PGPDFVVCDEGHILKNEASAVSKAMNSIRS K A L L K N 1 0 0 3 1 0 1 2 1 1 2 1 0 1 2 0 0 0 0 3 0 0 19 0 2080.0299 A4LAA3;P46100;B4DHH8;H0Y3T0 A4LAA3 1707 1725 ATRX Transcriptional regulator ATRX yes no 3 0.00024514 78.848 3 2 0.58958 0.74279 33.851 4 Median 0.57183 0.70861 6.8723 3 0 Median 0.92614 1.4069 NaN 1 0 Median 47586000 30938000 16648000 32784000 20520000 12265000 14801000 10419000 4382800 768 556 789 2884;2885;2886;2887;2888 4287;4288;4289;4290;4291;4292;4293;4294;4295 4290 9 ALVEFESNPEETREPGSPPSVQR PESPESLTSVSRTRRALVEFESNPEETREP PEETREPGSPPSVQRAGLGSPERPPKTSPG R A L Q R A 1 2 1 0 0 1 5 1 0 0 1 0 0 1 4 3 1 0 0 2 0 0 23 1 2554.23 Q9H6F5;H0YG79 Q9H6F5 31 53 CCDC86 Coiled-coil domain-containing protein 86 yes no 3 5.0963E-24 104.63 3 2 0.3663 0.5236 31.157 4 Median 0.49473 0.65778 20.049 2 0 Median 0.27799 0.41605 20.299 2 0 Median 64693000 43645000 21048000 30914000 18494000 12420000 33778000 25150000 8628100 769 1737 790 2889;2890;2891;2892;2893 4296;4297;4298;4299;4300;4301;4302;4303;4304;4305;4306 4300 11 ALVFQPVAELK ANTPDSGCVLGMRKRALVFQPVAELKDQTD MRKRALVFQPVAELKDQTDFEHRIPKEQWW R A L L K D 2 0 0 0 0 1 1 0 0 0 2 1 0 1 1 0 0 0 0 2 0 0 11 0 1213.7071 A0A024R0Y5;P08237;A0A0S2Z4A1;Q96I60;A0A0S2Z4I1;B4E162;A0A0S2Z4A8;Q7KYX9;Q7Z683 A0A024R0Y5 717 727 PFKM;DKFZp779O048 ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type yes no 2 0.0036197 105.4 2 2 0.53101 0.69839 NaN 1 Median 0.53101 0.69839 NaN 1 0 Median NaN NaN NaN 0 0 Median 35327000 2017000 33310000 4588900 2017000 2571900 30738000 0 30738000 770 44 791 2894;2895;2896;2897 4307;4308;4309;4310;4311 4311 5 ALVIQESER AVGLPLGPGREALEKALVIQESERRKKLRF REALEKALVIQESERRKKLRFHPRQLYLSV K A L E R R 1 1 0 0 0 1 2 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 9 0 1043.5611 Q59FM7;A0A0G2JIS2;A0A024RCN9;B7Z852;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7;A0A0G2JRR0;A0A0G2JRN8 Q59FM7 449 457 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 2 0.0051903 72.485 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5151900 3025700 2126300 3025700 3025700 0 2126300 0 2126300 771 298 792 2898;2899 4312;4313 4312 2 ALVLDCHYPEDEVGQEDEAESDIFSIR PNFVVEVIKNDDGKRALVLDCHYPEDEVGQ VGQEDEAESDIFSIREVSFQSTGESEWKDT R A L I R E 2 1 0 4 1 1 5 1 1 2 2 0 0 1 1 2 0 0 1 2 0 0 27 0 3135.3979 A8K651;Q07021;I3L3Q7;I3L3B0 A8K651 181 207 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes no 3 1.8612E-21 117.36 4 1 0.42561 0.56813 73.422 5 Median 0.40834 0.55059 14.449 4 0 Median 1.8461 2.6869 NaN 1 0 Median 92137000 58389000 33748000 79626000 55137000 24489000 12511000 3252200 9258900 772 620 793 2900;2901;2902;2903;2904 4314;4315;4316;4317;4318;4319;4320;4321;4322;4323 4320 10 ALVNCQYSSATFSTGER LFQIRGSRARALPDRALVNCQYSSATFSTG VNCQYSSATFSTGERKRRPHGDRKSCEMGL R A L E R K 2 1 1 0 1 1 1 1 0 0 1 0 0 1 0 3 2 0 1 1 0 0 17 0 1889.8578 E9PI41;Q9NPD3 E9PI41 93 109 EXOSC4 Exosome complex component RRP41 yes no 2 1.6763E-25 174.39 4 2 0.55462 0.76277 20.967 6 Median 0.60785 0.82191 11.248 4 0 Median 0.39487 0.57084 2.727 2 0 Median 36399000 22856000 13543000 21715000 12974000 8741400 14684000 9882700 4801600 773 1033 794 2905;2906;2907;2908;2909;2910 4324;4325;4326;4327;4328;4329;4330;4331;4332;4333;4334 4326 11 ALVQNDTLLQVK FDQQNGRTYLKYSIKALVQNDTLLQVKGTG SIKALVQNDTLLQVKGTGANGSFKLNRKKL K A L V K G 1 0 1 1 0 2 0 0 0 0 3 1 0 0 0 0 1 0 0 2 0 0 12 0 1340.7664 Q92522 Q92522 95 106 H1FX Histone H1x yes yes 2 6.4746E-29 166.16 5 2 0.7107 0.92061 9.0782 7 Median 0.73821 0.97571 6.9821 5 0 Median 0.52816 0.83299 3.6275 2 0 Median 1999900000 1174900000 824930000 1454600000 836600000 618020000 545260000 338350000 206910000 774 1671 795 2911;2912;2913;2914;2915;2916;2917 4335;4336;4337;4338;4339;4340;4341;4342;4343;4344;4345;4346;4347 4341 13 ALVTGYFMQVAHLER STDFTSRDYYINIRKALVTGYFMQVAHLER ALVTGYFMQVAHLERTGHYLTVKDNQVVQL K A L E R T 2 1 0 0 0 1 1 1 1 0 2 0 1 1 0 0 1 0 1 2 0 0 15 0 1733.8923 O43143;B4E0S6 O43143 692 706 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 3 0.00014431 66.059 2 2 0.54091 0.67889 14.062 4 Linear 0.4859 0.67889 13.366 2 0 Median 0.48992 0.68743 20.322 2 0 Median 19712000 12846000 6866700 7201300 4720200 2481100 12511000 8125500 4385700 775 1180 796;797 2918;2919;2920;2921 4348;4349;4350;4351 4350 425 4 ALYDTFSAFGNILSCK GNVFIKNLDKSIDNKALYDTFSAFGNILSC LYDTFSAFGNILSCKVVCDENGSKGYAFVH K A L C K V 2 0 1 1 1 0 0 1 0 1 2 1 0 2 0 2 1 0 1 0 0 0 16 0 1805.8658 A0A087WTT1;A0A024R9C1;P11940;A0A024R9E2;E7EQV3;B4DZW4;B3KT93;E5RGH3;E5RJB9;B1ANR0;Q6IQ30;Q13310;H0Y5F5;B1ANR1;H0YEQ8 B1ANR0 114 129 PABPC1;PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 no no 2 2.5052E-50 248.19 4 0.26065 0.32114 7.5267 4 Median 0.26065 0.32114 7.5267 4 0 Median NaN NaN NaN 0 0 Median 101260000 79869000 21389000 101260000 79869000 21389000 0 0 0 776 676;217 798 2922;2923;2924;2925 4352;4353;4354;4355;4356;4357;4358;4359;4360;4361 4352 10 ALYEDVILQPGTQEALK KYEHVLKCRLSNRQKALYEDVILQPGTQEA YEDVILQPGTQEALKSGHFVNVLSILVRLQ K A L L K S 2 0 0 1 0 2 2 1 0 1 3 1 0 0 1 0 1 0 1 1 0 0 17 0 1886.9989 Q96L91;A7E2D7 Q96L91 1334 1350 EP400 E1A-binding protein p400 yes no 2 3.7224E-05 68.536 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1719800 1719800 0 1719800 1719800 0 0 0 0 777 1692 799 2926 4362 4362 1 ALYEHLTAK LMKSYVSEKDVTSAKALYEHLTAKNTKLDD DVTSAKALYEHLTAKNTKLDDLFLKRYASL K A L A K N 2 0 0 0 0 0 1 0 1 0 2 1 0 0 0 0 1 0 1 0 0 0 9 0 1044.5604 E5KNY5;P42704 E5KNY5 1339 1347 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.0050942 99.136 3 0.31464 0.39573 14.092 3 Median 0.31464 0.39573 14.092 3 0 Median NaN NaN NaN 0 0 Median 18563000 13020000 5542700 18563000 13020000 5542700 0 0 0 778 1001 800 2927;2928;2929 4363;4364;4365;4366 4363 4 ALYETELADAR TEREEVRGRELTGLKALYETELADARRALD TGLKALYETELADARRALDDTARERAKLQI K A L A R R 3 1 0 1 0 0 2 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 11 0 1250.6143 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;A0A0D9SFY5 P20700 80 90 LMNB1 Lamin-B1 yes no 2 0.0028578 75.294 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2460100 2460100 0 2460100 2460100 0 0 0 0 779 1285 801 2930;2931 4367;4368 4367 2 ALYLIATNGTPELQNPEK MVEGEPPYLNENPLRALYLIATNGTPELQN LIATNGTPELQNPEKLSPIFRDFLNRCLEM R A L E K L 2 0 2 0 0 1 2 1 0 1 3 1 0 0 2 0 2 0 1 0 0 0 18 0 1971.0313 A8K5M4;Q13177;H0YCG5;B7Z302;E9PM17;B7Z3K0;B3KNX7;Q9Y6B5;A0A024R5P0;A8KAN3;Q13153 A8K5M4 451 468 PAK2;PAK1 Non-specific serine/threonine protein kinase;Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Serine/threonine-protein kinase PAK 1 yes no 2 5.9555E-05 113.52 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1880900 1880900 0 1880900 1880900 0 0 0 0 780 618 802 2932;2933 4369;4370 4369 2 ALYPSSVGQPFQGAYLEINK YEEKLEASELFKDKKALYPSSVGQPFQGAY SVGQPFQGAYLEINKNPKYKKLKDAIEEKI K A L N K N 2 0 1 0 0 2 1 2 0 1 2 1 0 1 2 2 0 0 2 1 0 0 20 0 2181.1106 E9PDF6;B0I1S9;O43795;H7C2Y7;B3KQI2 E9PDF6 924 943 MYO1B Unconventional myosin-Ib yes no 2 3.2417E-19 144.18 4 1.3972 1.7624 12.72 4 Median 1.3972 1.7624 12.72 4 0 Median NaN NaN NaN 0 0 Median 38105000 15704000 22402000 38105000 15704000 22402000 0 0 0 781 665 803 2934;2935;2936;2937 4371;4372;4373;4374;4375 4372 5 ALYYLQIHPQELR VASCNSSQVVVAVGRALYYLQIHPQELRQI GRALYYLQIHPQELRQISHTEMEHEVACLD R A L L R Q 1 1 0 0 0 2 1 0 1 1 3 0 0 0 1 0 0 0 2 0 0 0 13 0 1642.8831 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 515 527 DDB1 DNA damage-binding protein 1 yes no 2;3 3.7101E-07 145.23 9 4 0.81604 1.1353 12.555 11 Median 0.81604 1.066 8.6922 7 0 Median 0.81292 1.3177 9.3231 4 0 Median 475670000 259820000 215850000 298210000 164430000 133780000 177460000 95388000 82070000 782 1520 804 2938;2939;2940;2941;2942;2943;2944;2945;2946;2947;2948;2949;2950 4376;4377;4378;4379;4380;4381;4382;4383;4384;4385;4386;4387;4388;4389;4390;4391;4392;4393;4394;4395;4396 4382 21 AMDLAQAGSTVESK FTTYFLPLANTLKSKAMDLAQAGSTVESKI KAMDLAQAGSTVESKIYDTLQWQMWTLLPG K A M S K I 3 0 0 1 0 1 1 1 0 0 1 1 1 0 0 2 1 0 0 1 0 0 14 0 1406.6711 B3KMR5;Q5JTH9;B3KY97 B3KMR5 600 613 RRP12 RRP12-like protein yes no 2 0.026721 41.383 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5165900 0 5165900 0 0 0 5165900 0 5165900 783 756 805 2951 4397 4397 1 AMDTPKPAVSDEK EEFLALRKRTPSAGKAMDTPKPAVSDEKNI GKAMDTPKPAVSDEKNINTFVETPVQKLDL K A M E K N 2 0 0 2 0 0 1 0 0 0 0 2 1 0 2 1 1 0 0 1 0 0 13 1 1387.6653 P46013 P46013 2386 2398 MKI67 Antigen KI-67 yes yes 2;3 0.00010871 84.169 3 0.87334 1.4063 3.3175 3 Median NaN NaN NaN 0 0 Median 0.87334 1.4063 3.3175 3 0 Median 48923000 25625000 23298000 0 0 0 48923000 25625000 23298000 784 1342 806 2952;2953;2954 4398;4399;4400;4401;4402 4402 567 5 AMGIMNSFVNDIFER KVLKQVHPDTGISSKAMGIMNSFVNDIFER AMGIMNSFVNDIFERIAGEASRLAHYNKRS K A M E R I 1 1 2 1 0 0 1 1 0 2 0 0 2 2 0 1 0 0 0 1 0 0 15 0 1742.812 B2R4S9;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;B4DR52;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;O60814;Q0D2M2;A8K9J7;P57053;A0A024RCJ2;Q16778;P33778;P23527;P06899;Q8N257 B2R4S9 59 73 HIST1H2BI;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;H2BFS;HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B no no 2 1.0656E-156 317.4 61 21 0.71248 0.98291 26.022 50 Median 0.7297 1.0037 22.457 35 0 Median 0.47937 0.91197 24.696 15 0 Plateau 35357000000 27867000000 7489900000 11457000000 6688300000 4768500000 23900000000 21179000000 2721300000 785 25;295 807;808;809 2955;2956;2957;2958;2959;2960;2961;2962;2963;2964;2965;2966;2967;2968;2969;2970;2971;2972;2973;2974;2975;2976;2977;2978;2979;2980;2981;2982;2983;2984;2985;2986;2987;2988;2989;2990;2991;2992;2993;2994;2995;2996;2997;2998;2999;3000;3001;3002;3003;3004;3005;3006;3007;3008;3009;3010;3011;3012;3013;3014;3015;3016;3017;3018;3019;3020;3021;3022;3023;3024;3025;3026;3027;3028;3029;3030;3031;3032;3033;3034;3035;3036 4403;4404;4405;4406;4407;4408;4409;4410;4411;4412;4413;4414;4415;4416;4417;4418;4419;4420;4421;4422;4423;4424;4425;4426;4427;4428;4429;4430;4431;4432;4433;4434;4435;4436;4437;4438;4439;4440;4441;4442;4443;4444;4445;4446;4447;4448;4449;4450;4451;4452;4453;4454;4455;4456;4457;4458;4459;4460;4461;4462;4463;4464;4465;4466;4467;4468;4469;4470;4471;4472;4473;4474;4475;4476;4477;4478;4479;4480;4481;4482;4483;4484;4485;4486;4487;4488;4489;4490;4491;4492;4493;4494;4495;4496;4497;4498;4499;4500;4501;4502;4503;4504;4505;4506;4507;4508;4509;4510;4511;4512;4513;4514;4515;4516;4517;4518;4519;4520;4521;4522;4523;4524;4525;4526;4527;4528;4529;4530;4531;4532;4533;4534;4535;4536;4537;4538;4539 4528 2;3 131 AMHTPKPSVGEEK GELLACRNLMPSAGKAMHTPKPSVGEEKDI GKAMHTPKPSVGEEKDIIIFVGTPVQKLDL K A M E K D 1 0 0 0 0 0 2 1 1 0 0 2 1 0 2 1 1 0 0 1 0 0 13 1 1409.6973 P46013 P46013 1295 1307 MKI67 Antigen KI-67 yes yes 3 2.4041E-05 80.312 1 2 0.90661 1.4387 28.786 3 Median 0.74838 0.89481 NaN 1 0 Median 0.92027 1.471 3.139 2 0 Median 39541000 21704000 17837000 2342500 1420700 921760 37199000 20283000 16916000 786 1342 810 3037;3038;3039 4540;4541;4542;4543 4542 568 4 AMNVLTEAEER LQEMKEKLGRNVNMRAMNVLTEAEERYNDL VNMRAMNVLTEAEERYNDLMKKKRIVENDK R A M E R Y 2 1 1 0 0 0 3 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 11 0 1261.5973 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27;A0A0C4DGE5 A0A024R158 987 997 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 9.6046E-05 96.342 5 4 0.60184 0.91261 23.671 7 Median 0.66837 0.89313 38.045 3 0 Median 0.5685 0.91571 3.9594 4 0 Median 274510000 173740000 100780000 16009000 7301400 8707300 258510000 166430000 92072000 787 50 811;812 3040;3041;3042;3043;3044;3045;3046;3047;3048 4544;4545;4546;4547;4548;4549;4550;4551;4552;4553;4554;4555;4556;4557;4558;4559 4555 8 16 AMPEEEPVRGPAK AERLAKRNRRAKRARAMPEEEPVRGPAKKQ ARAMPEEEPVRGPAKKQKQGKKSVFDEELT R A M A K K 2 1 0 0 0 0 3 1 0 0 0 1 1 0 3 0 0 0 0 1 0 0 13 1 1409.6973 B7Z6D5;B3GQE6;Q96GQ7;Q53G15 B7Z6D5 695 707 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 0.029763 58.37 1 0.5698 0.93318 NaN 1 Median NaN NaN NaN 0 0 Median 0.5698 0.93318 NaN 1 0 Median 19061000 12062000 6999100 0 0 0 19061000 12062000 6999100 788 750 813 3049 4560 4560 1 AMVEYEIDLQK QDLIKMIFDVESMKKAMVEYEIDLQKMPLG SMKKAMVEYEIDLQKMPLGKLSKRQIQAAY K A M Q K M 1 0 0 1 0 1 2 0 0 1 1 1 1 0 0 0 0 0 1 1 0 0 11 0 1337.6537 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 685 695 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.00075939 70.028 1 1 0.63777 0.91127 48.571 2 Median 1.014 1.2847 NaN 1 0 Median 0.40112 0.64638 NaN 1 0 Median 48577000 31964000 16612000 11282000 5492000 5790300 37295000 26472000 10822000 789 107 814;815 3050;3051 4561;4562 4562 59 2 ANAPSCDRLEDLASLVYLNESSVLHTLR HDGAILDVDEDDVEKANAPSCDRLEDLASL SLVYLNESSVLHTLRQRYGASLLHTYAGPS K A N L R Q 3 2 2 2 1 0 2 0 1 0 6 0 0 0 1 4 1 0 1 2 0 0 28 1 3142.5717 A0A0D9SFK2;A0A024QZ63;Q92614;B4E0T8;H0YEV9 A0A0D9SFK2 399 426 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 4 0.028172 30.855 1 0.56951 0.77782 NaN 1 Median 0.56951 0.77782 NaN 1 0 Median NaN NaN NaN 0 0 Median 1859400 1233900 625480 1859400 1233900 625480 0 0 0 790 6 816 3052 4563 4563 1 ANATVDGLEQGYVVCPSEK SLKKEPLYVGVDDDKANATVDGLEQGYVVC VDGLEQGYVVCPSEKRFLLLFTFLKKNRKK K A N E K R 2 0 1 1 1 1 2 2 0 0 1 1 0 0 1 1 1 0 1 3 0 0 19 0 2035.9521 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254;Q59FR7 Q4ZG72 269 287 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 3.5854E-162 299.64 4 3 0.92461 1.148 29.076 7 Median 0.99407 1.2572 5.9593 4 0 Median 0.43754 0.67585 23.352 3 0 Median 212330000 118610000 93713000 146500000 72505000 73994000 65827000 46109000 19719000 791 242 817 3053;3054;3055;3056;3057;3058;3059 4564;4565;4566;4567;4568;4569;4570;4571;4572;4573;4574;4575 4566 12 ANATVDGLEQGYVVCPSEKR SLKKEPLYVGVDDDKANATVDGLEQGYVVC DGLEQGYVVCPSEKRFLLLFTFLKKNRKKK K A N K R F 2 1 1 1 1 1 2 2 0 0 1 1 0 0 1 1 1 0 1 3 0 0 20 1 2192.0532 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254;Q59FR7 Q4ZG72 269 288 DDX18 ATP-dependent RNA helicase DDX18 yes no 3 4.2715E-16 127.32 4 2 1.0441 1.4104 40.576 5 Median 1.1456 1.4909 4.5571 3 0 Median 0.46887 0.70924 6.5373 2 0 Median 37481000 18319000 19161000 27767000 11530000 16237000 9713200 6789200 2924000 792 242 818 3060;3061;3062;3063;3064;3065 4576;4577;4578;4579;4580;4581;4582;4583;4584;4585 4576 10 ANCIDSTASAEAVFASEVK HTFLRNGGHFVISIKANCIDSTASAEAVFA DSTASAEAVFASEVKKMQQENMKPQEQLTL K A N V K K 5 0 1 1 1 0 2 0 0 1 0 1 0 1 0 3 1 0 0 2 0 0 19 0 1968.9099 Q96BS4;P22087;M0R299;M0QXL5;M0R2Q4;B4DLD4 Q96BS4 205 223 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2 5.2226E-72 225.21 4 2 0.70752 0.92195 22.646 6 Median 0.74315 0.97265 5.3521 4 0 Median 0.39579 0.62628 0.25368 2 0 Median 635170000 389300000 245870000 430200000 244670000 185540000 204970000 144640000 60335000 793 1288 819 3066;3067;3068;3069;3070;3071 4586;4587;4588;4589;4590;4591;4592;4593;4594;4595;4596 4586 11 ANCIDSTASAEAVFASEVKK HTFLRNGGHFVISIKANCIDSTASAEAVFA STASAEAVFASEVKKMQQENMKPQEQLTLE K A N K K M 5 0 1 1 1 0 2 0 0 1 0 2 0 1 0 3 1 0 0 2 0 0 20 1 2097.0048 Q96BS4;P22087;M0R299;M0QXL5;M0R2Q4;B4DLD4 Q96BS4 205 224 FBL rRNA 2-O-methyltransferase fibrillarin yes no 3 1.8237E-14 114.99 2 2 0.39205 0.55056 58.236 4 Median 0.74988 0.9172 6.3745 2 0 Median 0.20909 0.33548 4.2499 2 0 Median 121020000 85709000 35309000 66840000 40793000 26047000 54177000 44915000 9261500 794 1288 820 3072;3073;3074;3075 4597;4598;4599;4600;4601 4599 5 ANCYTAFHVTCAQK LCKQKGVGACIQCHKANCYTAFHVTCAQKA KANCYTAFHVTCAQKAGLYMKMEPVKELTG K A N Q K A 3 0 1 0 2 1 0 0 1 0 0 1 0 1 0 0 2 0 1 1 0 0 14 0 1669.7341 Q86X06;A0A024R4V5;B4E3L9;A0A024R4W4;O95696 Q86X06 344 357 BRD1 Bromodomain-containing protein 1 yes no 3 0.005302 63.181 1 1.0509 1.3182 NaN 1 Median 1.0509 1.3182 NaN 1 0 Median NaN NaN NaN 0 0 Median 3785900 1947500 1838400 3785900 1947500 1838400 0 0 0 795 128 821 3076 4602 4602 1 ANEEGLALLQEEIDK TNVSSLLNMERARDKANEEGLALLQEEIDK ANEEGLALLQEEIDKMVETTELMTGNIQSL K A N D K M 2 0 1 1 0 1 4 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 15 0 1670.8363 A0A024RD28;Q7L2Z9 A0A024RD28 150 164 C6orf139;CENPQ Centromere protein Q yes no 2 1.9109E-07 133.71 1 0.47935 0.62455 NaN 1 Median 0.47935 0.62455 NaN 1 0 Median NaN NaN NaN 0 0 Median 4783100 3076500 1706600 4783100 3076500 1706600 0 0 0 796 309 822 3077 4603 4603 1 ANEHQGIGFLNDPR FQGREKDFIILSCVRANEHQGIGFLNDPRR RANEHQGIGFLNDPRRLNVALTRARYGVII R A N P R R 1 1 2 1 0 1 1 2 1 1 1 0 0 1 1 0 0 0 0 0 0 0 14 0 1566.7539 A0A024R7L5;A0A024R7L8;Q92900;B3KY55 A0A024R7L5 844 857 UPF1 Regulator of nonsense transcripts 1 yes no 3 0.00017625 45.864 1 0.48044 0.65074 NaN 1 Median 0.48044 0.65074 NaN 1 0 Median NaN NaN NaN 0 0 Median 8528900 6462100 2066700 8528900 6462100 2066700 0 0 0 797 180 823 3078 4604;4605 4605 2 ANELPQPPVPEPANAGK PAEDDDYSPPSKRPKANELPQPPVPEPANA ELPQPPVPEPANAGKRKVREFNFEKWNARI K A N G K R 3 0 2 0 0 1 2 1 0 0 1 1 0 0 5 0 0 0 0 1 0 0 17 0 1727.8842 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347 X5D2J9 286 302 GTF2I General transcription factor II-I yes no 2 0.0016586 51.774 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1470000 0 1470000 1470000 0 1470000 0 0 0 798 651 824 3079 4606 4606 1 ANEPTHFTVDCTEAGEGDVSVGIK KVKVFGPGVERSGLKANEPTHFTVDCTEAG DCTEAGEGDVSVGIKCDARVLSEDEEDVDF K A N I K C 2 0 1 2 1 0 3 3 1 1 0 1 0 1 1 1 3 0 0 3 0 0 24 0 2532.1438 O75369;A0A024R321;Q68CT4;E7EN95 O75369 759 782 FLNB;DKFZp686A1668 Filamin-B yes no 3 7.4519E-09 97.152 3 0.83241 1.043 17.985 3 Median 0.83241 1.043 17.985 3 0 Median NaN NaN NaN 0 0 Median 22459000 11187000 11271000 22459000 11187000 11271000 0 0 0 799 1199 825 3080;3081;3082 4607;4608;4609;4610;4611;4612 4609 6 ANGTTVHVGIHPSK RKKYVIYIERVQREKANGTTVHVGIHPSKV KANGTTVHVGIHPSKVVITRLKLDKDRKKI K A N S K V 1 0 1 0 0 0 0 2 2 1 0 1 0 0 1 1 2 0 0 2 0 0 14 0 1416.7474 Q9UNX3;E5RIT6;J3KS10;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;Q6IBH6;P61254 Q9UNX3 90 103 RPL26L1;RPL26 60S ribosomal protein L26-like 1;60S ribosomal protein L26 no no 2;3 9.4617E-50 193.15 5 4 0.81575 1.0242 46.352 9 Median 0.82145 1.0748 6.2831 5 0 Median 0.31454 0.45252 19.605 4 0 Median 590000000 334180000 255830000 538980000 294980000 244010000 51016000 39197000 11819000 800 1797;1142 826 3083;3084;3085;3086;3087;3088;3089;3090;3091 4613;4614;4615;4616;4617;4618;4619;4620;4621;4622;4623;4624;4625;4626;4627;4628 4615 15 ANILGLAAGQR RVEGITGKQMESFLKANILGLAAGQRCGAS SFLKANILGLAAGQRCGAS___________ K A N Q R C 3 1 1 0 0 1 0 2 0 1 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1082.6196 Q14807;A0A024R632;B7Z9T5;H3BRB3;Q14985;O60846;Q14984 Q14807 651 661 KIF22;OBP-2;A-328A3.5;OBP-1 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 0.0014489 98.033 3 2 0.87224 1.1695 24.715 5 Median 0.91585 1.23 3.1919 3 0 Median 0.52877 0.77567 4.924 2 0 Median 66273000 39214000 27059000 37795000 20930000 16865000 28478000 18284000 10194000 801 1497 827 3092;3093;3094;3095;3096 4629;4630;4631;4632;4633;4634;4635 4631 7 ANINVENAFFTLAR LALDYGIKFMETSAKANINVENAFFTLARD KANINVENAFFTLARDIKAKMDKKLEGNSP K A N A R D 3 1 3 0 0 0 1 0 0 1 1 0 0 2 0 0 1 0 0 1 0 0 14 0 1578.8154 A0A024R7I3;P61006 A0A024R7I3 154 167 RAB8A Ras-related protein Rab-8A yes no 2 4.274E-21 177.04 2 2 0.51109 0.69579 0.13163 2 Median 0.51109 0.69579 0.13163 2 0 Median NaN NaN NaN 0 0 Median 14596000 4252800 10343000 5651300 3546700 2104600 8944400 706070 8238400 802 178 828 3097;3098;3099;3100 4636;4637;4638;4639 4636 4 ANITLSGK LITRHHLKKRASSARANITLSGKKRRKLLQ KRASSARANITLSGKKRRKLLQQIRLAQKE R A N G K K 1 0 1 0 0 0 0 1 0 1 1 1 0 0 0 1 1 0 0 0 0 0 8 0 802.45487 A0A0B4J220;L0R588;E9PLD3;E9PRG8 A0A0B4J220 60 67 C11orf98;C11orf48 Uncharacterized protein C11orf98 yes no 2 0.0071408 81.296 1 0.81899 1.0187 NaN 1 Median 0.81899 1.0187 NaN 1 0 Median NaN NaN NaN 0 0 Median 31954000 15903000 16051000 31954000 15903000 16051000 0 0 0 803 415 829 3101 4640 4640 1 ANITLSGKK LITRHHLKKRASSARANITLSGKKRRKLLQ RASSARANITLSGKKRRKLLQQIRLAQKEK R A N K K R 1 0 1 0 0 0 0 1 0 1 1 2 0 0 0 1 1 0 0 0 0 0 9 1 930.54983 A0A0B4J220;L0R588;E9PLD3;E9PRG8 A0A0B4J220 60 68 C11orf98;C11orf48 Uncharacterized protein C11orf98 yes no 2 0.006104 73.248 1 0.84055 1.0333 NaN 1 Median 0.84055 1.0333 NaN 1 0 Median NaN NaN NaN 0 0 Median 8320200 4258000 4062300 8320200 4258000 4062300 0 0 0 804 415 830 3102 4641 4641 1 ANLEESFPR ______________________________ ______________________________ M A N P R G 1 1 1 0 0 0 2 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 9 0 1061.5142 Q14690;B4DH82;B4DES7;S4R3Q4 Q14690 2 10 PDCD11 Protein RRP5 homolog yes no 1 0.014328 85.67 2 0.9199 1.3052 10.147 2 Median 0.9199 1.3052 10.147 2 0 Median NaN NaN NaN 0 0 Median 4263200 1666000 2597200 4263200 1666000 2597200 0 0 0 805 1494 831 3103;3104 4642;4643;4644 4643 3 ANLGVFSVFAPR LMPSNQQHKTDEKGRANLGVFSVFAPRGEH KGRANLGVFSVFAPRGEHTLQVKAIYNKSI R A N P R G 2 1 1 0 0 0 0 1 0 0 1 0 0 2 1 1 0 0 0 2 0 0 12 0 1276.6928 A6NHR9;J3KTL8 A6NHR9 1325 1336 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 2.0427E-07 125.97 4 2 0.78532 1.0536 37.597 5 Median 0.74183 1.0288 12.85 3 0 Median 1.338 1.8797 4.7376 2 0 Median 60066000 33310000 26756000 39342000 23918000 15424000 20724000 9391500 11332000 806 568 832 3105;3106;3107;3108;3109;3110 4645;4646;4647;4648;4649;4650;4651;4652;4653;4654;4655;4656 4649 12 ANLPQSFQVDTSK KVKCSGPGLSPGMVRANLPQSFQVDTSKAG VRANLPQSFQVDTSKAGVAPLQVKVQGPKG R A N S K A 1 0 1 1 0 2 0 0 0 0 1 1 0 1 1 2 1 0 0 1 0 0 13 0 1433.7151 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1465 1477 FLNA;FLJ00119 Filamin-A yes no 2 0.0012882 108.31 3 0.94612 1.1679 11.437 3 Median 0.94612 1.1679 11.437 3 0 Median NaN NaN NaN 0 0 Median 86988000 43304000 43684000 86988000 43304000 43684000 0 0 0 807 1287 833 3111;3112;3113 4657;4658;4659 4657 1 ANLQIDQINTDLNLER EEQGNTELINDRLKKANLQIDQINTDLNLE NLQIDQINTDLNLERSHAQKNENARQQLER K A N E R S 1 1 3 2 0 2 1 0 0 2 3 0 0 0 0 0 1 0 0 0 0 0 16 0 1868.9592 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1755 1770 MYH9;FLJ00279 Myosin-9 no no 2 2.6275E-130 295.29 4 2 0.97923 1.3446 84.477 6 Median 0.95376 1.3231 3.9428 4 0 Median 4.1491 6.6862 11.123 2 0 Median 600960000 272510000 328450000 484830000 251930000 232900000 116140000 20583000 95555000 808 61;490 834 3114;3115;3116;3117;3118;3119 4660;4661;4662;4663;4664;4665;4666;4667;4668;4669;4670;4671;4672 4662 13 ANLQQAIVTPLK NGTGGLFQGKTPLRKANLQQAIVTPLKPVD LRKANLQQAIVTPLKPVDNTYYKEAEKENL K A N L K P 2 0 1 0 0 2 0 0 0 1 2 1 0 0 1 0 1 0 0 1 0 0 12 0 1294.7609 Q643R0;Q9ULW0 Q643R0 64 75 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 1.4623E-12 133.23 1 0.73306 0.92647 NaN 1 Median 0.73306 0.92647 NaN 1 0 Median NaN NaN NaN 0 0 Median 11768000 6619700 5147900 11768000 6619700 5147900 0 0 0 809 1581 835 3120 4673 4673 1 ANLQQAIVTPLKPVDNTYYK NGTGGLFQGKTPLRKANLQQAIVTPLKPVD AIVTPLKPVDNTYYKEAEKENLVEQSIPSN K A N Y K E 2 0 2 1 0 2 0 0 0 1 2 2 0 0 2 0 2 0 2 2 0 0 20 1 2275.2212 Q643R0;Q9ULW0 Q643R0 64 83 HCTP4;TPX2 Targeting protein for Xklp2 yes no 3 6.3491E-41 181.86 4 2 0.72775 0.88796 11.062 6 Median 0.7818 0.95441 9.8112 4 0 Median 0.51409 0.82741 3.4005 2 0 Median 279860000 154320000 125540000 192540000 96249000 96294000 87316000 58066000 29249000 810 1581 836 3121;3122;3123;3124;3125;3126 4674;4675;4676;4677;4678;4679;4680;4681;4682;4683;4684;4685;4686;4687;4688 4675 15 ANLSLLR GGRSEEKISDSEGFKANLSLLRRPGEKTYT ISDSEGFKANLSLLRRPGEKTYTQRCRLFV K A N L R R 1 1 1 0 0 0 0 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 7 0 785.47594 Q9BSV4;Q86VG2;P23246;Q6PIX2 Q9BSV4 207 213 SFPQ Splicing factor, proline- and glutamine-rich yes no 2 0.0056837 114.02 5 1 0.49846 0.68317 NaN 1 Median 0.49846 0.68317 NaN 1 0 Median NaN NaN NaN 0 0 Median 16956000 14844000 2112600 16956000 14844000 2112600 0 0 0 811 1292 837 3127;3128;3129;3130;3131;3132 4689;4690;4691;4692;4693;4694;4695 4694 7 ANNPGIVLTFVLPTEQFHLGK PTPEAYIHRAGRTARANNPGIVLTFVLPTE VLTFVLPTEQFHLGKIEELLSGENRGPILL R A N G K I 1 0 2 0 0 1 1 2 1 1 3 1 0 2 2 0 2 0 0 2 0 0 21 0 2294.2423 Q9NY93;Q53HB9;H7C3E9 Q9NY93 379 399 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 3 1.7994E-32 164.5 4 1.1044 1.3634 3.8727 4 Median 1.1044 1.3634 3.8727 4 0 Median NaN NaN NaN 0 0 Median 83821000 40567000 43254000 83821000 40567000 43254000 0 0 0 812 1768 838 3133;3134;3135;3136 4696;4697;4698;4699;4700;4701;4702;4703;4704;4705 4698 10 ANPALYVLR GSKPLIQQAMAKIMKANPALYVLRERIRKG MAKIMKANPALYVLRERIRKGLQLYSSEPT K A N L R E 2 1 1 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 1 1 0 0 9 0 1015.5815 Q6P2Q9;B4DK16;Q6JH02;Q6JH03 Q6P2Q9 1736 1744 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0099409 91.9 2 1 0.61514 0.85216 41.264 3 Median 0.59084 0.81472 6.3536 2 0 Median 1.1981 1.6579 NaN 1 0 Median 28467000 16083000 12384000 17756000 11572000 6184100 10710000 4510900 6199500 813 1592 839 3137;3138;3139 4706;4707;4708;4709;4710 4706 5 ANPDPNCCLGVFGLSLYTTER SHSPMSTRRRHVGNRANPDPNCCLGVFGLS CCLGVFGLSLYTTERDLREVFSKYGPIADV R A N E R D 1 1 2 1 2 0 1 2 0 0 3 0 0 1 2 1 2 0 1 1 0 0 21 0 2383.0937 Q8N1H4;Q68DZ9;Q59GA1;B2RDQ3;P62995 Q8N1H4 76 96 DKFZp686F18120;TRA2B Transformer-2 protein homolog beta yes no 2 1.279E-18 128.45 4 0.27679 0.36974 6.9772 4 Median 0.27679 0.36974 6.9772 4 0 Median NaN NaN NaN 0 0 Median 84167000 67117000 17050000 84167000 67117000 17050000 0 0 0 814 740 840 3140;3141;3142;3143 4711;4712;4713;4714;4715;4716;4717;4718;4719;4720 4714 10 ANPDPNTCLGVFGLSLYTTER SHSPMSNRRRHTGSRANPDPNTCLGVFGLS TCLGVFGLSLYTTERDLREVFSRYGPLSGV R A N E R D 1 1 2 1 1 0 1 2 0 0 3 0 0 1 2 1 3 0 1 1 0 0 21 0 2324.1107 Q549U1;Q13595 Q549U1 113 133 HSU53209;TRA2A Transformer-2 protein homolog alpha yes no 2 3.4272E-31 158.17 3 0.41021 0.56486 13.101 3 Median 0.41021 0.56486 13.101 3 0 Median NaN NaN NaN 0 0 Median 27853000 18947000 8905700 27853000 18947000 8905700 0 0 0 815 1472 841 3144;3145;3146 4721;4722;4723;4724;4725;4726;4727;4728 4725 8 ANPFGGASHAK HDKQYKKAHLGTALKANPFGGASHAKGIVL TALKANPFGGASHAKGIVLEKVGVEAKQPN K A N A K G 3 0 1 0 0 0 0 2 1 0 0 1 0 1 1 1 0 0 0 0 0 0 11 0 1055.5148 A8K517;P62266;D6RD47;D6RDJ2;D6RIX0;D6R9I7 A8K517 38 48 RPS23 40S ribosomal protein S23 yes no 2;3 1.1232E-11 137.46 10 3 0.97521 1.2889 17.825 10 Median 1.0033 1.3043 11.721 7 0 Median 0.64035 0.99259 5.0867 3 0 Median 7567200000 3598500000 3968700000 7076800000 3301300000 3775400000 490450000 297170000 193280000 816 611 842 3147;3148;3149;3150;3151;3152;3153;3154;3155;3156;3157;3158;3159 4729;4730;4731;4732;4733;4734;4735;4736;4737;4738;4739;4740;4741;4742;4743;4744;4745;4746;4747;4748;4749;4750 4748 22 ANPQVGVAFPHIK DLDMVAIVRYAYDKRANPQVGVAFPHIKHN KRANPQVGVAFPHIKHNYECLVYVQLPFME R A N I K H 2 0 1 0 0 1 0 1 1 1 0 1 0 1 2 0 0 0 0 2 0 0 13 0 1376.7565 P13010;Q53T09 P13010 401 413 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 0.0040825 89.08 1 0.58675 0.74519 NaN 1 Median 0.58675 0.74519 NaN 1 0 Median NaN NaN NaN 0 0 Median 5107500 3283300 1824300 5107500 3283300 1824300 0 0 0 817 1262 843 3160 4751 4751 1 ANRFEYLLK QEPDPTYEEKMQTDRANRFEYLLKQTELFA KMQTDRANRFEYLLKQTELFAHFIQPAAQK R A N L K Q 1 1 1 0 0 0 1 0 0 0 2 1 0 1 0 0 0 0 1 0 0 0 9 1 1152.6291 O60264;B7ZAX9;B4DZC0;Q4W5G3 O60264 89 97 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 3 0.0035399 69.812 2 2.2953 3.0159 9.4398 2 Median 2.2953 3.0159 9.4398 2 0 Median NaN NaN NaN 0 0 Median 45634000 13996000 31638000 45634000 13996000 31638000 0 0 0 818 1189 844 3161;3162 4752;4753;4754 4753 3 ANSNLVLQADR ______________________________ YEYKANSNLVLQADRSLIDRTRRDEPTGEV K A N D R S 2 1 2 1 0 1 0 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 11 0 1199.6258 O75643 O75643 15 25 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.0031055 70.488 2 2 0.84173 1.1577 33.641 4 Median 0.62052 0.82651 17.485 2 0 Median 1.0241 1.4408 0.77392 2 0 Median 53367000 29628000 23739000 32716000 19965000 12751000 20651000 9663300 10988000 819 1206 845 3163;3164;3165;3166 4755;4756;4757;4758;4759;4760 4756 6 ANSNPFEVK KASGAPAGARGGPAKANSNPFEVKVNRQKF RGGPAKANSNPFEVKVNRQKFQILGRKTRH K A N V K V 1 0 2 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 1 0 0 9 0 1004.4927 A8KA74;P78316;E9PFK5 A8KA74 27 35 NOP14 Nucleolar protein 14 yes no 2 0.026668 56.81 1 0.96485 1.1707 NaN 1 Median 0.96485 1.1707 NaN 1 0 Median NaN NaN NaN 0 0 Median 28589000 14371000 14218000 28589000 14371000 14218000 0 0 0 820 652 846 3167 4761;4762 4762 2 ANTVTPAVGR TQSIQGKGKGKRSSRANTVTPAVGRLEVSM KRSSRANTVTPAVGRLEVSMVKPTPGLTPR R A N G R L 2 1 1 0 0 0 0 1 0 0 0 0 0 0 1 0 2 0 0 2 0 0 10 0 984.53524 A8K7A2;Q53HL2;B4DXT3 A8K7A2 167 176 CDCA8 Borealin yes no 2 4.4377E-06 116.73 4 2 0.94335 1.293 15.54 6 Median 1.0006 1.379 8.4156 4 0 Median 0.65487 1.0388 4.6602 2 0 Median 250300000 132070000 118230000 176850000 88710000 88137000 73456000 43359000 30096000 821 632 847 3168;3169;3170;3171;3172;3173 4763;4764;4765;4766;4767;4768;4769;4770;4771;4772;4773;4774 4769 12 ANVNEILDFFHGYR SGRVTPIKIMNLPFKANVNEILDFFHGYRI KANVNEILDFFHGYRIIPDSVSIQYNEQGL K A N Y R I 1 1 2 1 0 0 1 1 1 1 1 0 0 2 0 0 0 0 1 1 0 0 14 0 1693.8213 B9ZVT1;Q8IXT5 B9ZVT1 816 829 RBM12B RNA-binding protein 12B yes no 3 0.0041672 93.649 5 1 0.477 0.65217 24.119 5 Median 0.49504 0.67522 12.482 4 0 Median 0.30195 0.42185 NaN 1 0 Median 42466000 31942000 10523000 30813000 23626000 7186500 11653000 8316300 3336900 822 931 848 3174;3175;3176;3177;3178;3179 4775;4776;4777;4778;4779;4780;4781;4782 4777 7 ANYAVDAYFR IAFTEWIEPPKRERKANYAVDAYFREALRV KRERKANYAVDAYFREALRVSEPKAPKAPR K A N F R E 3 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 1 0 0 10 0 1188.5564 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370;D7EZH4 O60264 740 749 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 2 5.7455E-05 123.35 3 2 2.0674 3.0485 19.443 4 Median 1.9406 2.6634 0.36242 2 0 Median 2.2826 3.691 8.3139 2 0 Median 230440000 64912000 165520000 117130000 32125000 85000000 113310000 32787000 80523000 823 1189 849 3180;3181;3182;3183;3184 4783;4784;4785;4786;4787;4788;4789;4790 4786 8 APAHHPAAISTAK GVCSVLKGSEFMFEKAPAHHPAAISTAKFC EKAPAHHPAAISTAKFCIQEIEKSGGSKEA K A P A K F 5 0 0 0 0 0 0 0 2 1 0 1 0 0 2 1 1 0 0 0 0 0 13 0 1270.6782 B3KMR5;Q5JTH9 B3KMR5 274 286 RRP12 RRP12-like protein yes no 2;3 4.4271E-17 171.32 7 4 0.87706 1.1425 10.312 10 Median 0.89235 1.1121 10.635 6 0 Median 0.86899 1.1857 8.1709 4 0 Median 72475000 37714000 34761000 53367000 27556000 25812000 19108000 10159000 8949000 824 756 850 3185;3186;3187;3188;3189;3190;3191;3192;3193;3194;3195 4791;4792;4793;4794;4795;4796;4797;4798;4799;4800;4801;4802;4803;4804;4805;4806;4807;4808 4795 17 APAMFNIR KVVDPFSKKDWYDVKAPAMFNIRNIGKTLV KDWYDVKAPAMFNIRNIGKTLVTRTQGTKI K A P I R N 2 1 1 0 0 0 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 8 0 918.47456 Q6NXR8;P61247;A8K4W0;B7Z3M5;H0Y8L7;E9PFI5;D6RG13;H0Y9Y4;D6RI02 Q6NXR8 35 42 RPS3A 40S ribosomal protein S3a yes no 2 0.010424 59.205 1 5 0.54689 0.87865 15.858 4 Median 0.8635 1.1481 NaN 1 0 Median 0.54695 0.87627 5.9579 3 0 Plateau 154860000 104640000 50228000 16396000 7812400 8584000 138470000 96823000 41644000 825 1393 851;852 3196;3197;3198;3199;3200;3201 4809;4810;4811;4812;4813;4814 4811 606 6 APDEETLIALLAHAK LKQWEYCGQPKVVVKAPDEETLIALLAHAK APDEETLIALLAHAKMLGLTVSLIQDAGRT K A P A K M 4 0 0 1 0 0 2 0 1 1 3 1 0 0 1 0 1 0 0 0 0 0 15 0 1590.8617 Q96ME4;J3KQ48;Q9Y3E5 Q96ME4 120 134 PTRH2 Peptidyl-tRNA hydrolase 2, mitochondrial yes no 3 8.473E-07 118.73 4 0.46995 0.60222 19.914 3 Median 0.46995 0.60222 19.914 3 0 Median NaN NaN NaN 0 0 Median 47427000 33104000 14323000 47427000 33104000 14323000 0 0 0 826 1134 853 3202;3203;3204;3205 4815;4816;4817;4818;4819;4820;4821 4815 7 APDVEQAIEVLTR SSANHSLQLASQIQKAPDVEQAIEVLTRSS QKAPDVEQAIEVLTRSSLEVELAAKEREIA K A P T R S 2 1 0 1 0 1 2 0 0 1 1 0 0 0 1 0 1 0 0 2 0 0 13 0 1439.762 P39880;Q13948;Q3LIA3 P39880 273 285 CUX1;Nbla10317 Homeobox protein cut-like 1;Protein CASP yes no 2 9.9221E-11 131.42 2 1 0.59198 0.84258 31.666 3 Median 0.5823 0.8227 3.3752 2 0 Median 0.9884 1.4216 NaN 1 0 Median 13929000 7897600 6031500 7705300 4949600 2755700 6223800 2948100 3275800 827 1331 854 3206;3207;3208 4822;4823;4824 4823 3 APEAAAAEREEVAYDPEDETILEEAK DTQLVERGRRHEVERAPEAAAAEREEVAYD VAYDPEDETILEEAKVTVDDLPNRMCADVR R A P A K V 7 1 0 2 0 0 8 0 0 1 1 1 0 0 2 0 1 0 1 1 0 0 26 1 2845.3141 Q9BTC0 Q9BTC0 1413 1438 DIDO1 Death-inducer obliterator 1 yes yes 3 2.1636E-06 111.99 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8960300 0 8960300 8960300 0 8960300 0 0 0 828 1713 855 3209;3210 4825;4826 4826 2 APENVTCTIPDGVPIDITVK LEKKTSEEGTSEENKAPENVTCTIPDGVPI TCTIPDGVPIDITVKLMVCLVHLNILEPLN K A P V K L 1 0 1 2 1 0 1 1 0 3 0 1 0 0 3 0 3 0 0 3 0 0 20 0 2138.0929 Q9Y5Q9;H7C143 Q9Y5Q9 372 391 GTF3C3 General transcription factor 3C polypeptide 3 yes no 2 2.0963E-06 78.244 3 0.48421 0.64022 11.568 3 Median 0.48421 0.64022 11.568 3 0 Median NaN NaN NaN 0 0 Median 8879200 5625500 3253600 8879200 5625500 3253600 0 0 0 829 1831 856 3211;3212;3213 4827;4828;4829;4830 4830 4 APEPTPQQVAQQQ LQMSERNILSRLANRAPEPTPQQVAQQQ__ NRAPEPTPQQVAQQQ_______________ R A P Q Q - 2 0 0 0 0 5 1 0 0 0 0 0 0 0 3 0 1 0 0 1 0 0 13 0 1420.6947 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 1874 1886 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.01022 47.971 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35522000 0 0 0 0 0 35522000 0 0 830 428 857 3214;3215 4831;4832 4831 2 APEQRPAPNAAPVDPTLR IFAILQSVKAREEGRAPEQRPAPNAAPVDP QRPAPNAAPVDPTLRTKQPIPAAYNRYDQE R A P L R T 4 2 1 1 0 1 1 0 0 0 1 0 0 0 5 0 1 0 0 1 0 0 18 1 1898.9963 Q6P1J9;B4DV47;A0A0S2Z5M9;A0A0S2Z5N1 Q6P1J9 264 281 CDC73 Parafibromin yes no 3 9.8646E-11 119.08 3 2 0.64983 0.87074 90.465 5 Median 0.63711 0.86237 4.998 3 0 Median 3.0976 4.3861 0.38369 2 0 Median 82741000 40122000 42619000 65254000 36135000 29119000 17487000 3986800 13500000 831 1590 858 3216;3217;3218;3219;3220 4833;4834;4835;4836;4837;4838;4839;4840;4841 4834 9 APFHQLR ISIKKALDTKIGRYKAPFHQLRISYGTNKG DTKIGRYKAPFHQLRISYGTNKGKNYTEEE K A P L R I 1 1 0 0 0 1 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 7 0 867.47152 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370 O60264 930 936 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 2 0.0041144 126.05 4 1 2.1388 2.9307 32.343 3 Plateau 2.1388 2.9307 32.343 3 0 Plateau NaN NaN NaN 0 0 Median 123170000 50244000 72922000 116430000 43508000 72922000 6736300 6736300 0 832 1189 859 3221;3222;3223;3224;3225 4842;4843;4844;4845;4846;4847 4844 6 APGAEEYAQQDVLK PGVLHCTTKFCDYGKAPGAEEYAQQDVLKK KAPGAEEYAQQDVLKKSYSKAFTLTISALF K A P L K K 3 0 0 1 0 2 2 1 0 0 1 1 0 0 1 0 0 0 1 1 0 0 14 0 1517.7362 B4DFN6;B4DI06;A0A024R1T5;P09543 B4DFN6 27 40 CNP 2,3-cyclic-nucleotide 3-phosphodiesterase yes no 2 4.393E-05 73.781 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1614600 1614600 0 1614600 1614600 0 0 0 0 833 68 860 3226 4848;4849 4849 2 APGASPGNPLSPSLSDK VQKITSPSLKKFACKAPGASPGNPLSPSLS GASPGNPLSPSLSDKDRGLKGAGGSPVGVE K A P D K D 2 0 1 1 0 0 0 2 0 0 2 1 0 0 4 4 0 0 0 0 0 0 17 0 1593.7999 Q7Z5J4 Q7Z5J4 1348 1364 RAI1 Retinoic acid-induced protein 1 yes yes 2 0.0065549 44.299 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1380200 1380200 0 1380200 1380200 0 0 0 0 834 1617 861 3227 4850 4850 1 APGEQTVPALNLQNAFR ATFVKEITYRASNIKAPGEQTVPALNLQNA GEQTVPALNLQNAFRIIKEVQKRYKTREAE K A P F R I 3 1 2 0 0 2 1 1 0 0 2 0 0 1 2 0 1 0 0 1 0 0 17 0 1824.9482 Q9Y5B9 Q9Y5B9 607 623 SUPT16H FACT complex subunit SPT16 yes yes 2 7.9353E-43 198.97 5 2 0.80356 1.1898 14.41 6 Median 0.79718 1.0957 9.3118 4 0 Median 0.83316 1.3894 8.032 2 0 Median 1651500000 914110000 737400000 722990000 408580000 314410000 928520000 505520000 422990000 835 1829 862 3228;3229;3230;3231;3232;3233;3234 4851;4852;4853;4854;4855;4856;4857;4858;4859;4860;4861 4851 11 APGIIPR KGPIGSKTRRRVGLKAPGIIPRISVREPMQ TRRRVGLKAPGIIPRISVREPMQTGIKAVD K A P P R I 1 1 0 0 0 0 0 1 0 2 0 0 0 0 2 0 0 0 0 0 0 0 7 0 722.44391 K7ERX7;V9HW26;P25705;B4DGW3;K7EK77;K7EJP1;K7ENJ4 K7ERX7 176 182 ATP5A1;HEL-S-123m ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 2 0.039437 54.525 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3561300 0 3561300 0 0 0 3561300 0 3561300 836 1154 863 3235 4862 4862 1 APGLGAFR EKMYERMYAALGDPKAPGLGAFRRKFIQTF AALGDPKAPGLGAFRRKFIQTFGKEFDKHF K A P F R R 2 1 0 0 0 0 0 2 0 0 1 0 0 1 1 0 0 0 0 0 0 0 8 0 787.43407 P78527 P78527 3622 3629 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0069139 107.74 3 2 0.63106 0.85536 36.279 4 Median 0.46899 0.62584 6.9136 2 0 Median 0.82131 1.1649 6.4036 2 0 Median 57440000 36212000 21229000 39309000 26547000 12762000 18131000 9665100 8466200 837 1427 864 3236;3237;3238;3239;3240 4863;4864;4865;4866;4867;4868 4864 6 APGSGLALLPLK LERLTYHQLLERCVRAPGSGLALLPLKITF CVRAPGSGLALLPLKITFRSMGGAVSAAEL R A P L K I 2 0 0 0 0 0 0 2 0 0 4 1 0 0 2 1 0 0 0 0 0 0 12 0 1135.6965 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 221 232 EPPK1 Epiplakin no no 2 0.0035667 99.815 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10730000 3645600 7084100 3645600 3645600 0 7084100 0 7084100 838 373;1386 865 3241;3242;3243 4869;4870;4871 4869 3 APIDTPTQQLIQDIK ATRWSSAIQNVTDTKAPIDTPTQQLIQDIK APIDTPTQQLIQDIKENCLNSDVVEQIYKR K A P I K E 1 0 0 2 0 3 0 0 0 3 1 1 0 0 2 0 2 0 0 0 0 0 15 0 1679.9094 Q69YP8;A0A0A0MQX1;Q9HD67;B4E0P0;B4DIJ5;Q8NCI3;E9PEW5;B7ZA23;B7Z3D4 Q69YP8 1140 1154 DKFZp762A083;MYO10 Unconventional myosin-X yes no 2 0.011247 83.081 1 0.51956 0.66953 NaN 1 Median 0.51956 0.66953 NaN 1 0 Median NaN NaN NaN 0 0 Median 910240 581250 329000 910240 581250 329000 0 0 0 839 385 866 3244 4872 4872 1 APIDTSDVEEK ESIANQRITAFKMEKAPIDTSDVEEKAEEI KMEKAPIDTSDVEEKAEEIIAEAEPPSEVV K A P E K A 1 0 0 2 0 0 2 0 0 1 0 1 0 0 1 1 1 0 0 1 0 0 11 0 1202.5667 B4DXG8;D6RIY6;A5PLM5;Q06265 B4DXG8 301 311 EXOSC9 Exosome complex component RRP45 yes no 2 2.4986E-05 114.97 1 2 0.49591 0.71643 6.939 3 Plateau 0.52127 0.65376 NaN 1 0 Median 0.47402 0.71643 6.3586 2 0 Median 33879000 22884000 10995000 3795300 2424400 1371000 30084000 20459000 9624300 840 559 867 3245;3246;3247 4873;4874;4875;4876;4877 4874 5 APIIAVTR KSGRSAHQVARYRPRAPIIAVTRNPQTARQ VARYRPRAPIIAVTRNPQTARQAHLYRGIF R A P T R N 2 1 0 0 0 0 0 0 0 2 0 0 0 0 1 0 1 0 0 1 0 0 8 0 839.52289 V9HWB8;P14618;B4DNK4;H3BTN5;A0A024R5Z9;B4DRT3;Q8WUW7;Q504U3;H3BR70 V9HWB8 448 455 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 2 0.038746 73.26 1 0.85261 1.131 NaN 1 Median 0.85261 1.131 NaN 1 0 Median NaN NaN NaN 0 0 Median 10445000 5355000 5090300 10445000 5355000 5090300 0 0 0 841 1267 868 3248 4878 4878 1 APILIATDVASR QQERDWVLNEFKHGKAPILIATDVASRGLD HGKAPILIATDVASRGLDVEDVKFVINYDY K A P S R G 3 1 0 1 0 0 0 0 0 2 1 0 0 0 1 1 1 0 0 1 0 0 12 0 1225.703 Q59F66;Q92841;B4DZQ7;A0A0U1RQJ0;B4DN41;J3KTA4;B5BUE6;P17844;B4DNG2;Q7Z2V5;Q59E92 B4DN41 381 392 DDX17;DDX5;DKFZp686J01190 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 no no 2 3.2753E-12 142.36 5 2 0.47529 0.65308 68.426 5 Median 0.47035 0.65265 3.9823 3 0 Plateau 1.3922 2.2131 7.4632 2 0 Median 240660000 145630000 95027000 165510000 115620000 49898000 75146000 30017000 45129000 842 833;1554 869 3249;3250;3251;3252;3253;3254;3255 4879;4880;4881;4882;4883;4884;4885;4886;4887;4888;4889;4890;4891;4892 4886 14 APIRPDIVNFVHTNLR GESSGKNVTLPAVFKAPIRPDIVNFVHTNL PIRPDIVNFVHTNLRKNNRQPYAVSELAGH K A P L R K 1 2 2 1 0 0 0 0 1 2 1 0 0 1 2 0 1 0 0 2 0 0 16 1 1861.0323 P36578;Q59GY2;B4DFI6;B4DMJ6;H3BTP7;H3BU31;B4DP82 P36578 30 45 RPL4 60S ribosomal protein L4 yes no 3;4 5.4327E-07 60.541 6 4 0.65579 0.94167 10.975 10 Median 0.66791 0.90292 5.6469 6 0 Median 0.64847 1.0411 7.5707 4 0 Median 1302600000 758680000 543910000 650680000 390920000 259770000 651900000 367760000 284140000 843 1325 870 3256;3257;3258;3259;3260;3261;3262;3263;3264;3265 4893;4894;4895;4896;4897;4898;4899;4900;4901;4902;4903;4904;4905;4906;4907;4908;4909;4910 4905 18 APIRPDIVNFVHTNLRK GESSGKNVTLPAVFKAPIRPDIVNFVHTNL IRPDIVNFVHTNLRKNNRQPYAVSELAGHQ K A P R K N 1 2 2 1 0 0 0 0 1 2 1 1 0 1 2 0 1 0 0 2 0 0 17 2 1989.1272 P36578;Q59GY2;B4DFI6;B4DMJ6;H3BTP7;H3BU31;B4DP82 P36578 30 46 RPL4 60S ribosomal protein L4 yes no 4 1.2849E-13 96.208 4 2 0.66781 0.9357 14.727 6 Median 0.68385 0.84515 10.203 4 0 Median 0.592 1.1144 2.3781 2 0 Median 2116400000 1263200000 853200000 1830700000 1083600000 747110000 285720000 179630000 106090000 844 1325 871 3266;3267;3268;3269;3270;3271 4911;4912;4913;4914;4915;4916;4917;4918;4919;4920;4921;4922;4923 4920 13 APIVTVGVNNDPADVR NKRTQIVTEIISEIRAPIVTVGVNNDPADV PIVTVGVNNDPADVRKKELKMAEIKVKLIE R A P V R K 2 1 2 2 0 0 0 1 0 1 0 0 0 0 2 0 1 0 0 4 0 0 16 0 1635.858 H0Y9Z8;Q9BPX3;Q6NUR1 Q9BPX3 471 486 NCAPG Condensin complex subunit 3 no no 2 4.492E-50 207.34 4 2 0.62018 0.85049 5.6195 6 Median 0.67651 0.93442 6.0088 4 0 Linear 0.51065 0.83787 1.621 2 0 Median 512720000 327670000 185050000 253490000 153840000 99656000 259220000 173830000 85390000 845 1706;1096 872 3272;3273;3274;3275;3276;3277 4924;4925;4926;4927;4928;4929;4930;4931;4932;4933;4934;4935;4936 4925 13 APLAVTSQVINCR LSVILMLEVGEGSHRAPLAVTSQVINCRNQ HRAPLAVTSQVINCRNQAVQFISALVDELK R A P C R N 2 1 1 0 1 1 0 0 0 1 1 0 0 0 1 1 1 0 0 2 0 0 13 0 1427.7555 P42695;G3V1A9;E9PKK4 P42695 319 331 NCAPD3 Condensin-2 complex subunit D3 yes no 2 6.4317E-37 175.65 4 2 0.57963 0.77993 34.057 6 Median 0.67333 0.90352 25.468 4 0 Median 0.38781 0.55493 4.9419 2 0 Median 61025000 38699000 22327000 39798000 23864000 15933000 21228000 14834000 6393200 846 1338 873 3278;3279;3280;3281;3282;3283 4937;4938;4939;4940;4941;4942;4943;4944;4945;4946 4943 10 APLNIPGTPVLEDFPQNDDEK SSPSERVFPMPLPRKAPLNIPGTPVLEDFP GTPVLEDFPQNDDEKERLQRRRSRVFDLQF K A P E K E 1 0 2 3 0 1 2 1 0 1 2 1 0 1 4 0 1 0 0 1 0 0 21 0 2308.1223 Q15003;B4DRG7;E9PHA2;A8K4T8;C9J470;C9JZP1 Q15003 42 62 NCAPH Condensin complex subunit 2 yes no 2 1.1027E-58 194.67 4 2 0.73176 0.94556 3.4982 6 Median 0.75322 0.95307 2.914 4 0 Median 0.57914 0.91441 3.9102 2 0 Median 539080000 327840000 211230000 199600000 113960000 85640000 339480000 213890000 125590000 847 1500 874 3284;3285;3286;3287;3288;3289 4947;4948;4949;4950;4951;4952;4953;4954;4955;4956 4948 10 APLNVQFNSPLPGDAVK GKPTHFTVYTKGAGKAPLNVQFNSPLPGDA LNVQFNSPLPGDAVKDLDIIDNYDYSHTVK K A P V K D 2 0 2 1 0 1 0 1 0 0 2 1 0 1 3 1 0 0 0 2 0 0 17 0 1765.9363 O75369;A0A024R321;Q68CT4;E7EN95 O75369 878 894 FLNB;DKFZp686A1668 Filamin-B yes no 2 3.9928E-36 183.89 4 0.74442 0.95616 8.4118 4 Median 0.74442 0.95616 8.4118 4 0 Median NaN NaN NaN 0 0 Median 28727000 15060000 13667000 28727000 15060000 13667000 0 0 0 848 1199 875 3290;3291;3292;3293 4957;4958;4959;4960;4961;4962;4963;4964;4965 4965 9 APLQGDHNHLFIR SMSLHLGNEVFDVYKAPLQGDHNHLFIRQG YKAPLQGDHNHLFIRQGTGLQGQAVFKTKL K A P I R Q 1 1 1 1 0 1 0 1 2 1 2 0 0 1 1 0 0 0 0 0 0 0 13 0 1516.7899 B4DNM0;Q8WVC0 B4DNM0 440 452 LEO1 RNA polymerase-associated protein LEO1 yes no 3;4 1.3802E-07 128.85 6 0.66917 0.90981 13.848 3 Median 0.66917 0.90981 13.848 3 0 Median NaN NaN NaN 0 0 Median 94639000 56694000 37945000 94639000 56694000 37945000 0 0 0 849 838 876 3294;3295;3296;3297;3298;3299 4966;4967;4968;4969;4970;4971;4972 4971 7 APLYDLAAHEDK SLDNIVKLWDTRSCKAPLYDLAAHEDKVLS SCKAPLYDLAAHEDKVLSVDWTDTGLLLSG K A P D K V 3 0 0 2 0 0 1 0 1 0 2 1 0 0 1 0 0 0 1 0 0 0 12 0 1341.6565 Q53T99;Q9GZL7;B4DRY7 Q53T99 377 388 WDR12 Ribosome biogenesis protein WDR12 yes no 3 0.048355 20.124 1 0.64106 0.94571 NaN 1 Median NaN NaN NaN 0 0 Median 0.64106 0.94571 NaN 1 0 Median 9101400 5656700 3444700 0 0 0 9101400 5656700 3444700 850 1543 877 3300 4973 4973 1 APNTPASGANGDGSMSQTQSGSTVK ASIVVYWNYQNSTCRAPNTPASGANGDGSM GDGSMSQTQSGSTVKATYATSDFTLLELNN R A P V K A 3 0 2 1 0 2 0 4 0 0 0 1 1 0 2 5 3 0 0 1 0 0 25 0 2349.0503 CON__P15636 CON__P15636 287 311 yes yes 2;3 2.1146E-181 290.18 14 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 248460000 248460000 0 248460000 248460000 0 0 0 0 + 851 962 878;879 3301;3302;3303;3304;3305;3306;3307;3308;3309;3310;3311;3312;3313;3314 4974;4975;4976;4977;4978;4979;4980;4981;4982;4983;4984;4985;4986;4987;4988 4979 338 15 APNTPDILEIEFK QAPPGLYTKTQDPAKAPNTPDILEIEFKKG AKAPNTPDILEIEFKKGVPVKVTNVKDGTT K A P F K K 1 0 1 1 0 0 2 0 0 2 1 1 0 1 2 0 1 0 0 0 0 0 13 0 1485.7715 Q5T6L4;A8KAP9;P00966;B4E395 Q5T6L4 216 228 ASS;ASS1 Argininosuccinate synthase yes no 2 0.0011868 95.618 2 1 1.3146 1.832 32.465 2 Median 1.1208 1.4562 NaN 1 0 Median 1.542 2.3048 NaN 1 0 Median 16975000 7752100 9222700 4869500 2065100 2804400 12105000 5687000 6418300 852 655 880 3315;3316;3317 4989;4990;4991 4990 3 APNTPDILEIEFKK QAPPGLYTKTQDPAKAPNTPDILEIEFKKG KAPNTPDILEIEFKKGVPVKVTNVKDGTTH K A P K K G 1 0 1 1 0 0 2 0 0 2 1 2 0 1 2 0 1 0 0 0 0 0 14 1 1613.8665 Q5T6L4;A8KAP9;P00966;B4E395 Q5T6L4 216 229 ASS;ASS1 Argininosuccinate synthase yes no 3 0.03134 14.5 2 0.66855 0.83439 4.7791 2 Median 0.66855 0.83439 4.7791 2 0 Median NaN NaN NaN 0 0 Median 17277000 9747900 7528800 17277000 9747900 7528800 0 0 0 853 655 881 3318;3319 4992;4993 4992 2 APPAPGPASGGSGEVDELFDVK ______________________________ ASGGSGEVDELFDVKNAFYIGSYQQCINEA M A P V K N 3 0 0 2 0 0 2 4 0 0 1 1 0 1 4 2 0 0 0 2 0 0 22 0 2096.0062 M0QXB4;O14579;Q53HJ6;M0R061 M0QXB4 2 23 COPE Coatomer subunit epsilon yes no 2 9.4058E-13 116.79 5 0.75059 0.95518 6.8228 3 Median 0.75059 0.95518 6.8228 3 0 Median NaN NaN NaN 0 0 Median 13977000 7794400 6182500 13977000 7794400 6182500 0 0 0 854 1158 882 3320;3321;3322;3323;3324 4994;4995;4996;4997;4998;4999;5000 4997 7 APPTACYAGAAPAPSQVK SSSSPPGTPSPADAKAPPTACYAGAAPAPS TACYAGAAPAPSQVKSKAKKTVDKHSDEYK K A P V K S 6 0 0 0 1 1 0 1 0 0 0 1 0 0 4 1 1 0 1 1 0 0 18 0 1755.8614 P17676;Q99557;Q9BSC0 P17676 243 260 CEBPB CCAAT/enhancer-binding protein beta yes no 2 1.2206E-38 190.57 3 1 1.0853 1.369 20.952 4 Median 1.0048 1.2768 15.877 3 0 Median 1.2352 1.7523 NaN 1 0 Median 30226000 14359000 15867000 24050000 11453000 12597000 6176200 2906300 3269900 855 1277 883 3325;3326;3327;3328 5001;5002;5003;5004;5005;5006;5007;5008;5009 5007 9 APPVDDAEVDELVLQTK RPGKKPHSTRRSQPKAPPVDDAEVDELVLQ PVDDAEVDELVLQTKRSSRRQSLELQKCEE K A P T K R 2 0 0 3 0 1 2 0 0 0 2 1 0 0 2 0 1 0 0 3 0 0 17 0 1837.9309 Q9UIG0 Q9UIG0 1319 1335 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 2.6768E-32 172.57 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 221620000 0 221620000 101490000 0 101490000 120130000 0 120130000 856 1786 884 3329;3330;3331;3332 5010;5011;5012;5013 5010 4 APQETYADIGGLDNQIQEIK MDDTDPLVTVMKVEKAPQETYADIGGLDNQ YADIGGLDNQIQEIKESVELPLTHPEYYEE K A P I K E 2 0 1 2 0 3 2 2 0 3 1 1 0 0 1 0 1 0 1 0 0 0 20 0 2202.0804 Q53XL8;Q53HB3;P62191;G3V4X1 Q53XL8 179 198 PSMC1 26S protease regulatory subunit 4 yes no 2 9.0445E-127 279.71 4 0.36349 0.46247 7.8522 4 Median 0.36349 0.46247 7.8522 4 0 Median NaN NaN NaN 0 0 Median 30724000 23267000 7457000 30724000 23267000 7457000 0 0 0 857 1398 885 3333;3334;3335;3336 5014;5015;5016;5017;5018;5019 5017 6 APQMYEFHLPLSPEELLK ______________________________ MYEFHLPLSPEELLKSGGVNQYVVQEVLSI M A P L K S 1 0 0 0 0 1 3 0 1 0 4 1 1 1 3 1 0 0 1 0 0 0 18 0 2141.0867 B3KMS0;Q15021;B3KY03;E7EN77;Q6ZV00;A0PJ76;F5GZK7;F5H431 B3KMS0 2 19 NCAPD2 Condensin complex subunit 1 yes no 3 0.0029943 57.788 1 0.55992 0.7415 NaN 1 Median 0.55992 0.7415 NaN 1 0 Median NaN NaN NaN 0 0 Median 2629100 1808000 821140 2629100 1808000 821140 0 0 0 858 757 886 3337 5020 5020 265 1 APQVLVLAPTR IEKLHGELQDRKRGRAPQVLVLAPTRELAN KRGRAPQVLVLAPTRELANQVSKDFSDITK R A P T R E 2 1 0 0 0 1 0 0 0 0 2 0 0 0 2 0 1 0 0 2 0 0 11 0 1163.7026 Q9NR30 Q9NR30 260 270 DDX21 Nucleolar RNA helicase 2 yes yes 2 1.5946E-07 130.41 4 2 0.63091 0.92216 5.7984 5 Median 0.70062 0.95304 6.0728 3 0 Median 0.5397 0.885 5.8159 2 0 Median 460800000 291740000 169060000 213230000 134570000 78652000 247580000 157160000 90412000 859 1756 887 3338;3339;3340;3341;3342;3343 5021;5022;5023;5024;5025;5026;5027;5028;5029;5030;5031;5032 5031 12 APQVVAEAAK YSESAKKEVVAEVVKAPQVVAEAAKTAKRK AEVVKAPQVVAEAAKTAKRKRESESESDET K A P A K T 4 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 0 2 0 0 10 0 982.54475 O60832 O60832 434 443 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2 3.6628E-08 150.27 3 2 0.73308 0.94483 8.2242 5 Median 0.76295 0.94853 4.3033 3 0 Median 0.53296 0.84478 1.6258 2 0 Median 194060000 115640000 78423000 125760000 70858000 54900000 68305000 44783000 23523000 860 1193 888 3344;3345;3346;3347;3348 5033;5034;5035;5036;5037;5038;5039;5040;5041;5042 5040 10 APSHVPFLLIGGGTAAFAAAR AALSASEGEEVPQDKAPSHVPFLLIGGGTA FLLIGGGTAAFAAARSIRARDPGARVLIVS K A P A R S 6 1 0 0 0 0 0 3 1 1 2 0 0 2 2 1 1 0 0 1 0 0 21 0 2023.1003 O95831;Q5RZA0 O95831 128 148 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 3 1.0782E-07 91.64 4 1 0.58289 0.79365 29.861 5 Median 0.57158 0.7697 6.4476 4 0 Median 0.96941 1.4773 NaN 1 0 Median 91544000 53906000 37638000 73908000 46982000 26927000 17636000 6924400 10712000 861 1224 889 3349;3350;3351;3352;3353 5043;5044;5045;5046;5047;5048;5049;5050 5046 8 APSIIFIDELDAIGTK GAKLVRDAFALAKEKAPSIIFIDELDAIGT PSIIFIDELDAIGTKRFDSEKAGDREVQRT K A P T K R 2 0 0 2 0 0 1 1 0 4 1 1 0 1 1 1 1 0 0 0 0 0 16 0 1701.9189 E9PKD5;E9PM69;R4GNH3;A8K781;A0A140VK42;P17980;E9PMD8;E9PN50 E9PKD5 240 255 PSMC3 26S protease regulatory subunit 6A yes no 2 2.9792E-50 211.22 2 0.37132 0.46439 11.159 2 Median 0.37132 0.46439 11.159 2 0 Median NaN NaN NaN 0 0 Median 37168000 25632000 11537000 37168000 25632000 11537000 0 0 0 862 507 890 3354;3355 5051;5052;5053;5054 5051 4 APSQLPLSGSR LEVKGNIELKRPLIKAPSQLPLSGSRLKRR PLIKAPSQLPLSGSRLKRRPDQMEDGLEPE K A P S R L 1 1 0 0 0 1 0 1 0 0 2 0 0 0 2 3 0 0 0 0 0 0 11 0 1111.5986 A0A024RCS7;Q9BW19;B4E063;A2AB20;A0A140T9E6 A0A024RCS7 24 34 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 0.019341 42.19 1 0.99944 1.3542 NaN 1 Median 0.99944 1.3542 NaN 1 0 Median NaN NaN NaN 0 0 Median 8299400 4042700 4256700 8299400 4042700 4256700 0 0 0 863 303 891 3356 5055 5055 1 APSTYGGGLSVSSR GSSRISSVLAGGSCRAPSTYGGGLSVSSRF RAPSTYGGGLSVSSRFSSGGACGLGGGYGG R A P S R F 1 1 0 0 0 0 0 3 0 0 1 0 0 0 1 4 1 0 1 1 0 0 14 0 1337.6575 CON__P08779;P08779 CON__P08779 42 55 KRT16 Keratin, type I cytoskeletal 16 yes no 2 0.00049029 106.67 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29311000 29311000 0 11112000 11112000 0 18199000 18199000 0 + 864 958 892 3357;3358;3359;3360 5056;5057;5058;5059 5057 4 APSTYGGGLSVSSSR GSSRISSVLAGGSCRAPSTYGGGLSVSSSR APSTYGGGLSVSSSRFSSGGAYGLGGGYGG R A P S R F 1 1 0 0 0 0 0 3 0 0 1 0 0 0 1 5 1 0 1 1 0 0 15 0 1424.6896 CON__P02533;P02533 CON__P02533 42 56 KRT14 Keratin, type I cytoskeletal 14 yes no 2 0.0055228 47.915 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62167000 62167000 0 0 0 0 62167000 62167000 0 + 865 949 893 3361;3362 5060;5061;5062 5060 3 APSVATVGSICDLNLK SGEGRVKESITRTSRAPSVATVGSICDLNL PSVATVGSICDLNLKIPEINSSDMSAHVTS R A P L K I 2 0 1 1 1 0 0 1 0 1 2 1 0 0 1 2 1 0 0 2 0 0 16 0 1643.8553 O75369;A0A024R321;Q68CT4;E7EN95;A0A0C4DGA1 O75369 2105 2120 FLNB;DKFZp686A1668 Filamin-B yes no 2 2.1699E-82 234.79 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3212300 3212300 0 3212300 3212300 0 0 0 0 866 1199 894 3363;3364 5063;5064 5063 2 APTSTEANHIR WQQSSLSLRWASRLRAPTSTEANHIRLSCL SRLRAPTSTEANHIRLSCLAVGLALLKRCV R A P I R L 2 1 1 0 0 0 1 0 1 1 0 0 0 0 1 1 2 0 0 0 0 0 11 0 1195.5945 A8KA74;P78316;E9PFK5 A8KA74 674 684 NOP14 Nucleolar protein 14 yes no 2 0.034767 38.567 1 0.71443 0.8794 NaN 1 Median NaN NaN NaN 0 0 Median 0.71443 0.8794 NaN 1 0 Median 1115800 633820 482000 0 0 0 1115800 633820 482000 867 652 895 3365 5065 5065 1 APVIDIGIANTGK YTFTATPEDFPKKHKAPVIDIGIANTGKFI HKAPVIDIGIANTGKFIMTASSDTTVLIWS K A P G K F 2 0 1 1 0 0 0 2 0 3 0 1 0 0 1 0 1 0 0 1 0 0 13 0 1267.7136 B4DY59;E9PF19;A0A0S2Z5F3;Q8N2L6;B2RB52;Q9Y4P3;B4DY50;Q96E41;A0A0S2Z5C1 B4DY59 60 72 TBL2 Transducin beta-like protein 2 yes no 2 5.1279E-05 82.171 2 0.84363 1.0718 3.9238 2 Median 0.84363 1.0718 3.9238 2 0 Median NaN NaN NaN 0 0 Median 10900000 5598500 5301300 10900000 5598500 5301300 0 0 0 868 480 896 3366;3367 5066;5067;5068;5069 5068 4 APVNTAELTDLLIQQNHIGSVIK DYDGIKKLLQQLFLKAPVNTAELTDLLIQQ TDLLIQQNHIGSVIKQTDVSEDSNDDMDED K A P I K Q 2 0 2 1 0 2 1 1 1 3 3 1 0 0 1 1 2 0 0 2 0 0 23 0 2473.354 Q9P287;B4DUS0;B4E318 Q9P287 85 107 BCCIP BRCA2 and CDKN1A-interacting protein yes no 3 1.1311E-39 168.83 3 1 1.9551 1.5368 40.601 4 Linear 1.2292 1.5353 1.2264 3 0 Plateau 2.1775 3.4365 NaN 1 0 Median 123850000 47194000 76652000 65187000 29046000 36141000 58659000 18149000 40510000 869 1779 897 3368;3369;3370;3371 5070;5071;5072;5073;5074;5075;5076 5070 7 APVPASELLASGVLSR VETLRQERLSFSGLRAPVPASELLASGVLS PVPASELLASGVLSRAQFEQLKDGKTTVKD R A P S R A 3 1 0 0 0 0 1 1 0 0 3 0 0 0 2 3 0 0 0 2 0 0 16 0 1565.8777 Q15149;D3DWL0 Q15149 3447 3462 PLEC;PLEC1 Plectin yes no 2 2.1217E-18 156 4 2 0.67441 0.91404 69.686 6 Median 0.64138 0.8715 4.9264 4 0 Median 2.1733 3.391 6.6265 2 0 Median 175850000 89600000 86254000 121310000 73450000 47864000 54541000 16150000 38391000 870 1507 898 3372;3373;3374;3375;3376;3377 5077;5078;5079;5080;5081;5082;5083;5084;5085 5084 9 APVPGTPDSLSSGSSR SMVAQAMGVYGALTKAPVPGTPDSLSSGSS PVPGTPDSLSSGSSRDVQGTDASLDEELDR K A P S R D 1 1 0 1 0 0 0 2 0 0 1 0 0 0 3 5 1 0 0 1 0 0 16 0 1513.7372 A0A087WYB4;Q9UJZ1 A0A087WYB4 276 291 STOML2 Stomatin-like protein 2, mitochondrial yes no 2 0.038713 42.041 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 871 362 899 3378 5086 5086 1 APVPTGEVYFADSFDR PDTTAPPSSPKVTYKAPVPTGEVYFADSFD PVPTGEVYFADSFDRGTLSGWILSKAKKDD K A P D R G 2 1 0 2 0 0 1 1 0 0 0 0 0 2 2 1 1 0 1 2 0 0 16 0 1769.8261 P27824;D6RHJ3;D6RD16;D6RAQ8;D6RAU8;D6RB85;D6RDP7;H0Y9Q7;Q16094 P27824 62 77 CANX Calnexin yes no 2 1.7705E-05 105.65 4 1 0.47949 0.64706 67.571 4 Median 0.45266 0.60577 8.1746 3 0 Median 1.73 2.4147 NaN 1 0 Median 34637000 20292000 14344000 23029000 16396000 6633800 11607000 3896800 7710500 872 1303 900 3379;3380;3381;3382;3383 5087;5088;5089;5090;5091;5092;5093;5094 5090 8 APVQPQQSPAAAPGGTDEK ______________________________ PQQSPAAAPGGTDEKPSGKERRDAGDKDKE K A P E K P 4 0 0 1 0 3 1 2 0 0 0 1 0 0 4 1 1 0 0 1 0 0 19 0 1847.9014 Q59EG8;Q13200;B4DM22;Q9NSM5;C9JPC0;F8WBS8 Q59EG8 14 32 PSMD2;DKFZp564A2282 26S proteasome non-ATPase regulatory subunit 2 yes no 2 0.0024893 45.28 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2232100 2232100 0 2232100 2232100 0 0 0 0 873 1465 901 3384 5095 5095 1 APVQPQQSPAAAPGGTDEKPSGK ______________________________ PAAAPGGTDEKPSGKERRDAGDKDKEQELS K A P G K E 4 0 0 1 0 3 1 3 0 0 0 2 0 0 5 2 1 0 0 1 0 0 23 1 2217.1026 Q59EG8;Q13200;B4DM22;Q9NSM5;C9JPC0;F8WBS8 Q59EG8 14 36 PSMD2;DKFZp564A2282 26S proteasome non-ATPase regulatory subunit 2 yes no 3 1.6116E-13 113.71 4 2 0.33761 0.42452 151.94 6 Median 0.27642 0.34813 20.757 4 0 Median 4.4564 6.9262 22.901 2 0 Median 42510000 23451000 19058000 28848000 21286000 7562300 13662000 2165800 11496000 874 1465 902 3385;3386;3387;3388;3389;3390 5096;5097;5098;5099;5100;5101;5102;5103;5104;5105;5106;5107 5098 12 AQAAAPASVPAQAPK LCRPKAKAKAKDQTKAQAAAPASVPAQAPK AQAAAPASVPAQAPKRTQAPTKASE_____ K A Q P K R 7 0 0 0 0 2 0 0 0 0 0 1 0 0 3 1 0 0 0 1 0 0 15 0 1376.7412 A0A024R326;Q6IPI1;P47914 A0A024R326 133 147 RPL29 60S ribosomal protein L29 yes no 2;3 3.5003E-15 124.6 7 2 0.7361 0.9729 10.946 7 Median 0.74734 1.0014 5.2767 5 0 Median 0.52196 0.82056 2.1816 2 0 Median 3840700000 2242600000 1598200000 2758700000 1545400000 1213300000 1082000000 697160000 384850000 875 97 903 3391;3392;3393;3394;3395;3396;3397;3398;3399 5108;5109;5110;5111;5112;5113;5114;5115;5116;5117;5118;5119;5120;5121;5122;5123;5124;5125;5126;5127;5128 5115 21 AQAALAVNISAAR ______________________________ ARAQAALAVNISAARGLQDVLRTNLGPKGT R A Q A R G 6 1 1 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 13 0 1254.7044 Q59ET3;B2R9K8;A0A024RDL1;P40227 Q59ET3 14 26 CCT6A T-complex protein 1 subunit zeta yes no 2 0.00043727 80.014 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14346000 5694500 8651800 5694500 5694500 0 8651800 0 8651800 876 319 904 3400;3401;3402;3403 5129;5130;5131;5132 5130 4 AQAALQAQQVNR GSLGPLLCSQVVKARAQAALQAQQVNRTTL KARAQAALQAQQVNRTTLTITQPRPTLTLS R A Q N R T 4 1 1 0 0 4 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 12 0 1296.6898 B3KUR4;A4D299;J3KR72;P49848 B3KUR4 392 403 TAF6 Transcription initiation factor TFIID subunit 6 yes no 2 0.0073589 100.02 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 877 553 905 3404 5133 5133 1 AQADLALEK QQEREVARLTQERGRAQADLALEKAARAEL TQERGRAQADLALEKAARAELEMRLQNALN R A Q E K A 3 0 0 1 0 1 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 0 957.51311 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q7Z757;Q9UPG3;Q4LE64;Q14980 Q4LE64 1016 1024 NUMA1;NuMA;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.045373 68.016 1 0.6998 0.87653 NaN 1 Median 0.6998 0.87653 NaN 1 0 Median NaN NaN NaN 0 0 Median 7291500 4134800 3156700 7291500 4134800 3156700 0 0 0 878 148;1499 906 3405 5134 5134 1 AQAEAQQPTFDALRDELR LPELEATKASLKKLRAQAEAQQPTFDALRD EAQQPTFDALRDELRGAQEVGERLQQRHGE R A Q L R G 4 2 0 2 0 3 2 0 0 0 2 0 0 1 1 0 1 0 0 0 0 0 18 1 2058.013 Q15149 Q15149 1274 1291 PLEC Plectin yes yes 3 1.5156E-11 116.58 4 2 0.93049 1.2585 20.661 6 Median 0.89851 1.2322 2.3211 4 0 Median 1.2684 1.8246 11.496 2 0 Median 137660000 69708000 67948000 114830000 59802000 55029000 22825000 9906200 12919000 879 1507 907 3406;3407;3408;3409;3410;3411 5135;5136;5137;5138;5139;5140;5141;5142;5143;5144;5145 5141 11 AQAEVEGLGK EPARECAQRIAEQQKAQAEVEGLGKGVARL AEQQKAQAEVEGLGKGVARLSAEAEKVLAL K A Q G K G 2 0 0 0 0 1 2 2 0 0 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1000.5189 Q15149 Q15149 1166 1175 PLEC Plectin yes yes 2 4.0454E-05 101.64 3 0.91592 1.1607 13.872 3 Median 0.91592 1.1607 13.872 3 0 Median NaN NaN NaN 0 0 Median 28317000 13835000 14482000 28317000 13835000 14482000 0 0 0 880 1507 908 3412;3413;3414 5146;5147;5148;5149 5149 4 AQALEDLAGFK TLPGSKRQLQTPKEKAQALEDLAGFKELFQ PKEKAQALEDLAGFKELFQTPGHTEELVAA K A Q F K E 3 0 0 1 0 1 1 1 0 0 2 1 0 1 0 0 0 0 0 0 0 0 11 0 1161.603 P46013 P46013 1218 1228 MKI67 Antigen KI-67 yes no 2 3.906E-07 146.69 5 3 0.98573 1.4708 20.139 6 Median 0.90015 1.1624 19.473 3 0 Median 1.0026 1.5496 0.25395 3 0 Median 3791700000 1946700000 1844900000 2734000000 1411900000 1322200000 1057600000 534860000 522770000 881 1342 909 3415;3416;3417;3418;3419;3420;3421;3422 5150;5151;5152;5153;5154;5155;5156;5157;5158;5159;5160;5161;5162;5163 5150 14 AQALEELTGFR NLPGSNRRLQTRKEKAQALEELTGFRELFQ RKEKAQALEELTGFRELFQTPCTDNPTTDE K A Q F R E 2 1 0 0 0 1 2 1 0 0 2 0 0 1 0 0 1 0 0 0 0 0 11 0 1233.6354 P46013 P46013 1826 1836 MKI67 Antigen KI-67 yes yes 2 4.1717E-17 154.85 4 2 0.89791 1.2397 14.205 5 Median 0.89463 1.2236 3.7782 3 0 Median 0.94444 1.5551 0.23845 2 0 Median 526260000 283900000 242360000 184090000 102330000 81756000 342170000 181570000 160600000 882 1342 910 3423;3424;3425;3426;3427;3428 5164;5165;5166;5167;5168;5169;5170;5171;5172;5173;5174;5175;5176;5177 5174 14 AQALEELTGFRELFQTPCTDNPTTDEK NLPGSNRRLQTRKEKAQALEELTGFRELFQ LFQTPCTDNPTTDEKTTKKILCKSPQSDPA K A Q E K T 2 1 1 2 1 2 4 1 0 0 3 1 0 2 2 0 5 0 0 0 0 0 27 1 3110.4503 P46013 P46013 1826 1852 MKI67 Antigen KI-67 yes yes 3 6.8063E-70 194.68 4 0.97016 1.2808 7.6433 4 Median 0.97016 1.2808 7.6433 4 0 Median NaN NaN NaN 0 0 Median 126380000 58316000 68066000 126380000 58316000 68066000 0 0 0 883 1342 911 3429;3430;3431;3432 5178;5179;5180;5181;5182;5183;5184;5185 5179 8 AQAQAQDAELVR LAEIFSLKTQLRGSRAQAQAQDAELVRLRE GSRAQAQAQDAELVRLREAVRSLQEQAPRE R A Q V R L 4 1 0 1 0 3 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 12 0 1298.6579 O15049 O15049 410 421 N4BP3 NEDD4-binding protein 3 yes yes 2 0.0019688 57.96 1 1.023 1.4517 NaN 1 Median 1.023 1.4517 NaN 1 0 Median NaN NaN NaN 0 0 Median 5582900 2486400 3096500 5582900 2486400 3096500 0 0 0 884 1176 912 3433 5186;5187 5186 2 AQCPIVER LPHSAGRYAAKRFRKAQCPIVERLTNSMMM AAKRFRKAQCPIVERLTNSMMMHGRNNGKK K A Q E R L 1 1 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 8 0 971.48585 M0R0F0;Q53G25;A0A024R4Q8;M0R0R2;P46782;Q59EK8 M0R0F0 64 71 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 2 0.00015312 125.25 3 0.71949 1.0136 4.8186 3 Plateau 0.71949 1.0136 4.8186 3 0 Plateau NaN NaN NaN 0 0 Median 317000000 179240000 137760000 317000000 179240000 137760000 0 0 0 885 126 913 3434;3435;3436 5188;5189;5190;5191;5192 5191 5 AQDEAFALQDVPLSSVVR GLVTLKHVYEIARIKAQDEAFALQDVPLSS EAFALQDVPLSSVVRSIIGSARSLGIRVVK K A Q V R S 3 1 0 2 0 2 1 0 0 0 2 0 0 1 1 2 0 0 0 3 0 0 18 0 1943.9953 Q53G19;Q9Y3B7;H0YCD5 Q53G19 125 142 MRPL11 39S ribosomal protein L11, mitochondrial yes no 2 4.4806E-15 134.4 2 0.86335 1.223 2.0189 2 Median 0.86335 1.223 2.0189 2 0 Median NaN NaN NaN 0 0 Median 6315100 3451400 2863600 6315100 3451400 2863600 0 0 0 886 1540 914 3437;3438 5193;5194 5194 2 AQDEGLLSDVVPFK EQDEYALRSHSLAKKAQDEGLLSDVVPFKV KAQDEGLLSDVVPFKVPGKDTVTKDNGIRP K A Q F K V 1 0 0 2 0 1 1 1 0 0 2 1 0 1 1 1 0 0 0 2 0 0 14 0 1516.7773 P55084;D6W539;B4DY96;F5GZQ3;B4DDC9 P55084 255 268 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 6.8013E-07 126.34 4 2 0.66523 0.8562 23.667 6 Median 0.60469 0.76511 15.62 4 0 Median 0.74723 1.1213 8.4929 2 0 Median 51266000 29907000 21359000 30408000 18464000 11944000 20857000 11443000 9414800 887 1378 915 3439;3440;3441;3442;3443;3444 5195;5196;5197;5198;5199;5200;5201;5202;5203;5204;5205 5200 11 AQDITLPHLCSVLLAFAR EPLMNRLEDKHVLNRAQDITLPHLCSVLLA ITLPHLCSVLLAFARLNFHPDQEDQFFSLV R A Q A R L 3 1 0 1 1 1 0 0 1 1 4 0 0 1 1 1 1 0 0 1 0 0 18 0 2024.0877 B3KM73;D3DVL7;B4DU42;Q969Z0;B3KRS4;B3KMT3;H7C4R5 B3KM73 251 268 TBRG4 Protein TBRG4 yes no 3 0.0036484 39.338 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1665700 1665700 0 1665700 1665700 0 0 0 0 888 752 916 3445 5206 5206 1 AQDTQPSDATSAPGAEGLEPPAAR PVRATGARAKKAPQRAQDTQPSDATSAPGA TSAPGAEGLEPPAAREPALSRAGSCRQRGA R A Q A R E 6 1 0 2 0 2 2 2 0 0 1 0 0 0 4 2 2 0 0 0 0 0 24 0 2336.088 Q8N884 Q8N884 88 111 MB21D1 Cyclic GMP-AMP synthase yes yes 2 1.4341E-47 166.52 3 2 1.0839 1.4738 5.3465 5 Median 1.1117 1.4972 1.1419 3 0 Median 0.82899 1.3553 0.23674 2 0 Median 289530000 151380000 138150000 93071000 43849000 49221000 196460000 107540000 88928000 889 1643 917 3446;3447;3448;3449;3450 5207;5208;5209;5210;5211;5212;5213;5214;5215;5216;5217 5212 11 AQDTQPSDATSAPGAEGLEPPAAREPALSR PVRATGARAKKAPQRAQDTQPSDATSAPGA EGLEPPAAREPALSRAGSCRQRGARCSTKP R A Q S R A 7 2 0 2 0 2 3 2 0 0 2 0 0 0 5 3 2 0 0 0 0 0 30 1 2989.4377 Q8N884 Q8N884 88 117 MB21D1 Cyclic GMP-AMP synthase yes yes 3 4.547E-05 77.445 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4105900 4105900 0 4105900 4105900 0 0 0 0 890 1643 918 3451;3452 5218;5219 5219 2 AQEEYEQIQAK FTIPKKNKKKTSNQKAQEEYEQIQAKRAAK SNQKAQEEYEQIQAKRAAKKQEFERRKQER K A Q A K R 2 0 0 0 0 3 3 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 11 0 1335.6307 Q9P031 Q9P031 172 182 CCDC59 Thyroid transcription factor 1-associated protein 26 yes yes 2 0.0013812 91.636 3 0.99964 1.2504 38.518 2 Median 0.99964 1.2504 38.518 2 0 Median NaN NaN NaN 0 0 Median 23100000 13504000 9596000 23100000 13504000 9596000 0 0 0 891 1774 919 3453;3454;3455 5220;5221;5222 5222 3 AQEGGGSEVFQELK LEAARMLCVNAPPKKAQEGGGSEVFQELKG KAQEGGGSEVFQELKGICIALGMSKPPANI K A Q L K G 1 0 0 0 0 2 3 3 0 0 1 1 0 1 0 1 0 0 0 1 0 0 14 0 1477.7049 E9PH82;I6L9E8;Q8NCA5;Q05CT2;B3KTW4 E9PH82 134 147 FAM98A Protein FAM98A yes no 2 1.6563E-18 160.22 3 2 0.74123 1.0228 6.5268 5 Median 0.76748 0.94957 8.5414 3 0 Median 0.67879 1.024 0.16366 2 0 Median 98227000 56095000 42132000 64420000 35230000 29190000 33808000 20865000 12943000 892 1028 920 3456;3457;3458;3459;3460 5223;5224;5225;5226;5227;5228;5229;5230 5226 8 AQEGPDAEIIGGER KVALELPASKFLWLKAQEGPDAEIIGGERS KAQEGPDAEIIGGERSVFYLLMKMFVTSSH K A Q E R S 2 1 0 1 0 1 3 3 0 2 0 0 0 0 1 0 0 0 0 0 0 0 14 0 1440.6845 O60287 O60287 622 635 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.00034656 99.539 3 0.74155 1.0424 NaN 1 Median 0.74155 1.0424 NaN 1 0 Median NaN NaN NaN 0 0 Median 10546000 8949600 1596700 10546000 8949600 1596700 0 0 0 893 1190 921 3461;3462;3463 5231;5232;5233 5233 3 AQEIDGQALLLLK IHSLPGCQDIADEFRAQEIDGQALLLLKED FRAQEIDGQALLLLKEDHLMSAMNIKLGPA R A Q L K E 2 0 0 1 0 2 1 1 0 1 4 1 0 0 0 0 0 0 0 0 0 0 13 0 1410.8082 A5YM43;Q8NDX5 A5YM43 943 955 PHC3 Polyhomeotic-like protein 3 no no 2 5.1232E-08 117.67 4 2 1.0133 1.3053 17.502 5 Median 1.0142 1.3107 12.88 4 0 Median 0.64247 0.96008 NaN 1 0 Median 69329000 40202000 29127000 48713000 23320000 25392000 20616000 16882000 3734500 894 561 922 3464;3465;3466;3467;3468;3469 5234;5235;5236;5237;5238;5239;5240;5241;5242;5243 5238 10 AQELGHSQSALASAQR RDSALETLQGQLEEKAQELGHSQSALASAQ QELGHSQSALASAQRELAAFRTKVQDHSKA K A Q Q R E 4 1 0 0 0 3 1 1 1 0 2 0 0 0 0 3 0 0 0 0 0 0 16 0 1652.823 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1175 1190 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2;3 3.3782E-50 217.19 7 4 0.69685 0.95254 18.302 7 Median 0.69685 0.95254 18.302 7 0 Median NaN NaN NaN 0 0 Median 190900000 112680000 78222000 161540000 94488000 67050000 29365000 18193000 11172000 895 148;1499 923 3470;3471;3472;3473;3474;3475;3476;3477;3478;3479;3480 5244;5245;5246;5247;5248;5249;5250;5251;5252;5253;5254;5255;5256;5257;5258;5259;5260 5247 17 AQEPESGLSEETQVK DYVAVARGSKDHNIRAQEPESGLSEETQVK AQEPESGLSEETQVKCLMDQATDPNILGRT R A Q V K C 1 0 0 0 0 2 4 1 0 0 1 1 0 0 1 2 1 0 0 1 0 0 15 0 1630.7686 P78527 P78527 4091 4105 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 4.0517E-15 162.49 5 2 0.5207 0.67114 48.918 5 Median 0.43769 0.55333 15.001 3 0 Median 0.86581 1.3633 2.6934 2 0 Median 120500000 77135000 43361000 57044000 42694000 14350000 63451000 34441000 29010000 896 1427 924 3481;3482;3483;3484;3485;3486;3487 5261;5262;5263;5264;5265;5266;5267;5268;5269;5270;5271 5262 11 AQEVAELK EEEEEQLNQTLAEMKAQEVAELKRKKKKLL QTLAEMKAQEVAELKRKKKKLLREQRKQRE K A Q L K R 2 0 0 0 0 1 2 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 8 0 886.476 Q8IY81;B4DKU3 Q8IY81 377 384 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 0.031653 50.703 1 0.67623 0.8531 NaN 1 Median 0.67623 0.8531 NaN 1 0 Median NaN NaN NaN 0 0 Median 14650000 8764200 5885400 14650000 8764200 5885400 0 0 0 897 1628 925 3488 5272 5272 1 AQFEGIVTDLIR MDSSGPKHLNMKLTRAQFEGIVTDLIRRTI LTRAQFEGIVTDLIRRTIAPCQKAMQDAEV R A Q I R R 1 1 0 1 0 1 1 1 0 2 1 0 0 1 0 0 1 0 0 1 0 0 12 0 1360.7351 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;B7Z4T3;A1XP52;H0YBG6 B7Z4V2 335 346 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 1.6565E-07 117.52 4 2 0.49527 0.66819 122.78 6 Median 0.47944 0.64803 8.8429 4 0 Median 4.3395 6.7667 7.8312 2 0 Median 173640000 89782000 83856000 117940000 78545000 39400000 55694000 11237000 44457000 898 910 926 3489;3490;3491;3492;3493;3494 5273;5274;5275;5276;5277;5278;5279;5280;5281 5277 9 AQFEQLK PVPASELLASGVLSRAQFEQLKDGKTTVKD LASGVLSRAQFEQLKDGKTTVKDLSELGSV R A Q L K D 1 0 0 0 0 2 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 7 0 862.45487 Q15149;D3DWL0 Q15149 3463 3469 PLEC;PLEC1 Plectin yes no 2 0.011705 104.11 2 0.74754 0.94305 10.676 2 Median 0.74754 0.94305 10.676 2 0 Median NaN NaN NaN 0 0 Median 56938000 32027000 24911000 56938000 32027000 24911000 0 0 0 899 1507 927 3495;3496 5282;5283 5283 2 AQFLVEFESQNK DVVEESHYIQQRVQKAQFLVEFESQNKEFL VQKAQFLVEFESQNKEFLMEQQRTRNEGAW K A Q N K E 1 0 1 0 0 2 2 0 0 0 1 1 0 2 0 1 0 0 0 1 0 0 12 0 1438.7092 B5MDQ0;Q2NKX8 B5MDQ0 581 592 ERCC6L DNA excision repair protein ERCC-6-like yes no 2 0.0013808 73.067 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3102700 0 3102700 3102700 0 3102700 0 0 0 900 902 928 3497 5284 5284 1 AQFLVEK AAVEAKQVAQQEAQRAQFLVEKAKQEQRQK VAQQEAQRAQFLVEKAKQEQRQKIVQAEGE R A Q E K A 1 0 0 0 0 1 1 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 7 0 833.4647 J3KPX7;Q99623;F5GY37;F5GWA7 J3KPX7 210 216 PHB2 Prohibitin-2 yes no 2 0.0053073 124.34 4 0.60184 0.75847 6.2116 4 Median 0.60184 0.75847 6.2116 4 0 Median NaN NaN NaN 0 0 Median 299130000 186860000 112270000 299130000 186860000 112270000 0 0 0 901 1133 929 3498;3499;3500;3501 5285;5286;5287;5288;5289;5290 5285 6 AQGPQQQPGSEGPSYAK APDQAAEIGSRGSTKAQGPQQQPGSEGPSY GPQQQPGSEGPSYAKKVALWLAGLLGAGGT K A Q A K K 2 0 0 0 0 4 1 3 0 0 0 1 0 0 3 2 0 0 1 0 0 0 17 0 1728.8067 Q0VAB1;A0A024R0M6;Q3ZCQ8;M0R047;M0R003;M0QXC3;M0R2Z3;M0R303;M0R2D2;M0R1Y4 Q0VAB1 151 167 TIMM50 Mitochondrial import inner membrane translocase subunit TIM50 yes no 2 1.8773E-10 131.69 2 1 0.33077 0.41363 82.658 2 Median 0.33077 0.41363 82.658 2 0 Median NaN NaN NaN 0 0 Median 4150100 1965300 2184800 2819100 1965300 853730 1331100 0 1331100 902 40 930 3502;3503;3504 5291;5292;5293 5291 3 AQHLADILSSK IPFNQALVFSNLHSRAQHLADILSSKGFPA LHSRAQHLADILSSKGFPAECILGNMNQNQ R A Q S K G 2 0 0 1 0 1 0 0 1 1 2 1 0 0 0 2 0 0 0 0 0 0 11 0 1181.6404 Q8TDR3;Q8NEH0;Q8IYV2;Q9UHI6 Q8TDR3 322 332 DDX20 Probable ATP-dependent RNA helicase DDX20 yes no 3 0.028647 28.764 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3006600 3006600 0 3006600 3006600 0 0 0 0 903 1630 931 3505 5294 5294 1 AQHQQALSSLELLNVLFR KVTENLRVLGEAQTKAQHQQALSSLELLNV QQALSSLELLNVLFRTCKHEKLTLDLTVLL K A Q F R T 2 1 1 0 0 3 1 0 1 0 5 0 0 1 0 2 0 0 0 1 0 0 18 0 2066.1273 Q9BQG0;I3L1L3;B4DE42 Q9BQG0 1077 1094 MYBBP1A Myb-binding protein 1A yes no 3 5.8462E-41 190.18 5 0.66679 0.90615 7.2875 2 Median 0.66679 0.90615 7.2875 2 0 Median NaN NaN NaN 0 0 Median 102200000 66332000 35867000 102200000 66332000 35867000 0 0 0 904 1708 932 3506;3507;3508;3509;3510 5295;5296;5297;5298;5299;5300;5301;5302;5303;5304 5298 10 AQHSENDLEEVGK QSQLTAFFLEALDFRAQHSENDLEEVGKTE FRAQHSENDLEEVGKTENCIIDCLVAMVVK R A Q G K T 1 0 1 1 0 1 3 1 1 0 1 1 0 0 0 1 0 0 0 1 0 0 13 0 1454.6638 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8;Q8N7L7;Q96ES5 B2RWN5 1879 1891 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.00047359 66.538 2 0.65673 0.86912 15.133 2 Median NaN NaN NaN 0 0 Median 0.65673 0.86912 15.133 2 0 Median 5772400 3083700 2688700 0 0 0 5772400 3083700 2688700 905 748 933 3511;3512 5305;5306;5307 5306 3 AQIAGYLYGVSPPDNPQVK PKNVLKKFICISDLRAQIAGYLYGVSPPDN GYLYGVSPPDNPQVKEIRCIVMVPQWGTHQ R A Q V K E 2 0 1 1 0 2 0 2 0 1 1 1 0 0 3 1 0 0 2 2 0 0 19 0 2016.0316 Q6P2Q9;B4DK16;Q53GM6 Q6P2Q9 2122 2140 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 1.1584E-08 112.02 4 1 0.60088 0.76845 33.211 5 Median 0.59544 0.75838 9.7212 4 0 Median 1.0348 1.5297 NaN 1 0 Median 48560000 29832000 18728000 38837000 25203000 13634000 9723500 4629200 5094300 906 1592 934 3513;3514;3515;3516;3517 5308;5309;5310;5311;5312;5313;5314;5315 5311 8 AQIAIDIK NDPNLETVYTLCEKKAQIAIDIKSAKRELK YTLCEKKAQIAIDIKSAKRELKKARTVLQM K A Q I K S 2 0 0 1 0 1 0 0 0 3 0 1 0 0 0 0 0 0 0 0 0 0 8 0 870.51747 P42285;A8K6I4;B4E3M6 P42285 826 833 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 0.036725 74.255 1 0.59817 0.75241 NaN 1 Median 0.59817 0.75241 NaN 1 0 Median NaN NaN NaN 0 0 Median 6110600 3496200 2614400 6110600 3496200 2614400 0 0 0 907 1336 935 3518 5316 5316 1 AQIFANTVDNAR VRDWSHYFKIIEDLRAQIFANTVDNARIVL DLRAQIFANTVDNARIVLQIDNARLAADDF R A Q A R I 3 1 2 1 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 12 0 1318.663 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965 F8VZY9 138 149 KRT18 Keratin, type I cytoskeletal 18 yes no 2 1.9299E-30 174.8 3 2 0.70503 1.0476 126.26 4 Median 0.25361 0.34988 3.2149 2 0 Median 1.9075 3.1153 2.2556 2 0 Median 632720000 436080000 196640000 450550000 374810000 75734000 182180000 61270000 120910000 908 252 936 3519;3520;3521;3522;3523 5317;5318;5319;5320;5321;5322;5323;5324;5325;5326;5327;5328;5329 5322 13 AQIHALEGGEVK EEAAFTCEYKYDGQRAQIHALEGGEVKIFS GQRAQIHALEGGEVKIFSRNQEDNTGKYPD R A Q V K I 2 0 0 0 0 1 2 2 1 1 1 1 0 0 0 0 0 0 0 1 0 0 12 0 1250.6619 M0R0Q7;Q59HG7;F5GZ28;B4DM52;P18858;B4DUE1 M0R0Q7 573 584 LIG1 DNA ligase;DNA ligase 1 yes no 2 0.028393 84.507 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 909 830 937 3524 5330 5330 1 AQIHDLVLVGGSTR LEPVEKALRDAKLDKAQIHDLVLVGGSTRI KAQIHDLVLVGGSTRIPKVQKLLQDFFNGR K A Q T R I 1 1 0 1 0 1 0 2 1 1 2 0 0 0 0 1 1 0 0 2 0 0 14 0 1464.8049 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DI39;B4DWK5;B4DNT8;B4DFN9;B4DVU9;B4E1S9;B4E388;V9GZ37;B3KTT5 A8K5I0 329 342 HEL-S-103;HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2;3 0.00011132 71.031 5 4 0.75416 1.0193 48.853 8 Median 0.69519 0.94806 6.6982 5 0 Median 1.6212 2.5417 8.3854 3 0 Plateau 343390000 183160000 160230000 265680000 156020000 109650000 77719000 27138000 50581000 910 439 938 3525;3526;3527;3528;3529;3530;3531;3532;3533 5331;5332;5333;5334;5335;5336;5337;5338;5339;5340;5341;5342;5343;5344;5345;5346 5340 16 AQINIR YNEEILDLLCPSREKAQINIREDPKEGIKI DLLCPSREKAQINIREDPKEGIKIVGLTEK K A Q I R E 1 1 1 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 6 0 713.41842 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 162 167 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.046641 118.18 1 0.72688 0.9728 NaN 1 Median 0.72688 0.9728 NaN 1 0 Median NaN NaN NaN 0 0 Median 17127000 9511900 7614800 17127000 9511900 7614800 0 0 0 911 1216 939 3534 5347 5347 1 AQIQQFHSQIAAQTSASVLAEELHK QMQVQDILEQNEALKAQIQQFHSQIAAQTS AAQTSASVLAEELHKVIAEKDKQIKQTEDS K A Q H K V 5 0 0 0 0 5 2 0 2 2 2 1 0 1 0 3 1 0 0 1 0 0 25 0 2734.4038 A0A024R663;Q86UP2 A0A024R663 583 607 KTN1 Kinectin yes no 4 0.0050746 26.422 2 0.3053 0.45963 9.7489 2 Median NaN NaN NaN 0 0 Median 0.3053 0.45963 9.7489 2 0 Median 31115000 23370000 7745000 0 0 0 31115000 23370000 7745000 912 155 940 3535;3536 5348;5349 5348 2 AQLADSFHLQQFFR LSRRNALHERAMRRRAQLADSFHLQQFFRD RAQLADSFHLQQFFRDSDELKSWVNEKMKT R A Q F R D 2 1 0 1 0 3 0 0 1 0 2 0 0 3 0 1 0 0 0 0 0 0 14 0 1706.8529 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 567 580 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 3 1.4431E-18 128.57 5 0.77921 1.0379 17.915 5 Median 0.77921 1.0379 17.915 5 0 Median NaN NaN NaN 0 0 Median 93644000 50982000 42661000 93644000 50982000 42661000 0 0 0 913 1476 941 3537;3538;3539;3540;3541 5350;5351;5352;5353;5354;5355 5353 6 AQLDQTGQHLFCVCGTR YAVERKIEPFYKGGKAQLDQTGQHLFCVCG LDQTGQHLFCVCGTRVNILEVASGAVLRSL K A Q T R V 1 1 0 1 2 3 0 2 1 0 2 0 0 1 0 0 2 0 0 1 0 0 17 0 1989.9149 Q12788 Q12788 30 46 TBL3 Transducin beta-like protein 3 yes yes 2;3 1.1657E-10 121.32 5 2 0.89238 1.1992 59.538 5 Median 0.9134 1.2224 4.4759 3 0 Median 0.29144 0.41988 5.6225 2 0 Median 96183000 51225000 44958000 83248000 41770000 41477000 12935000 9454100 3480900 914 1456 942 3542;3543;3544;3545;3546;3547;3548 5356;5357;5358;5359;5360;5361;5362;5363;5364 5360 9 AQLEEEAAAAEERPLVFLCSGCR WSSMSEDASVADMERAQLEEEAAAAEERPL AAEERPLVFLCSGCRRPLGDSLSWVASQED R A Q C R R 5 2 0 0 2 1 5 1 0 0 3 0 0 1 1 1 0 0 0 1 0 0 23 1 2605.2265 Q9NYP9 Q9NYP9 67 89 MIS18A Protein Mis18-alpha yes yes 3 0.0002318 59.342 2 0.64339 0.84247 12.965 2 Median 0.64339 0.84247 12.965 2 0 Median NaN NaN NaN 0 0 Median 8322400 5145200 3177200 8322400 5145200 3177200 0 0 0 915 1770 943 3549;3550 5365;5366;5367 5367 3 AQLENHEPEEEEEEEMETEEK RDMNEKELEAQEARKAQLENHEPEEEEEEE EPEEEEEEEMETEEKEAGGSDEEQEKGSSS K A Q E K E 1 0 1 0 0 1 12 0 1 0 1 1 1 0 1 0 1 0 0 0 0 0 21 0 2587.0392 A0A024R0H6;Q8N7H5;M0QYC7 A0A024R0H6 369 389 PAF1 RNA polymerase II-associated factor 1 homolog yes no 3 9.2273E-06 53.454 1 3.3988 5.0023 NaN 1 Median NaN NaN NaN 0 0 Median 3.3988 5.0023 NaN 1 0 Median 7934600 1445600 6489000 0 0 0 7934600 1445600 6489000 916 36 944 3551 5368 5368 4 1 AQLEPVASPAK INAIKDYELQLVTYKAQLEPVASPAKKPKV VTYKAQLEPVASPAKKPKVQSGSESVIQEY K A Q A K K 3 0 0 0 0 1 1 0 0 0 1 1 0 0 2 1 0 0 0 1 0 0 11 0 1109.6081 Q15149 Q15149 1428 1438 PLEC Plectin yes yes 2 0.00090023 106.18 3 1.4009 1.7752 3.1503 3 Median 1.4009 1.7752 3.1503 3 0 Median NaN NaN NaN 0 0 Median 23896000 9641100 14255000 23896000 9641100 14255000 0 0 0 917 1507 945 3552;3553;3554 5369;5370;5371;5372;5373;5374 5373 6 AQLGLGHSYSR FHNLVKGLTDLSACKAQLGLGHSYSRAKVK SACKAQLGLGHSYSRAKVKFNVNRVDNMII K A Q S R A 1 1 0 0 0 1 0 2 1 0 2 0 0 0 0 2 0 0 1 0 0 0 11 0 1187.6047 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 144 154 NOP56 Nucleolar protein 56 yes no 2;3 5.1216E-23 173.64 6 4 0.517 0.84016 15.202 9 Median 0.61786 0.84575 20.775 5 0 Median 0.49143 0.78984 4.3532 4 0 Median 923670000 591940000 331730000 631610000 395750000 235860000 292050000 196190000 95865000 918 647 946 3555;3556;3557;3558;3559;3560;3561;3562;3563;3564 5375;5376;5377;5378;5379;5380;5381;5382;5383;5384;5385;5386;5387;5388;5389;5390;5391 5384 17 AQLLQGLDEAK EQNLSSQVECLELEKAQLLQGLDEAKNNYI ELEKAQLLQGLDEAKNNYIVLQSSVNGLIQ K A Q A K N 2 0 0 1 0 2 1 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1184.6401 P49454 P49454 2579 2589 CENPF Centromere protein F yes yes 2 0.0013747 70.1 1 0.91668 1.3489 NaN 1 Median NaN NaN NaN 0 0 Median 0.91668 1.3489 NaN 1 0 Median 8003300 4010100 3993100 0 0 0 8003300 4010100 3993100 919 1351 947 3565 5392 5392 1 AQLMADFQAGR LWEVMQSDLIPEEQRAQLMADFQAGRVTKE EEQRAQLMADFQAGRVTKERMIIIIIEIIE R A Q G R V 3 1 0 1 0 2 0 1 0 0 1 0 1 1 0 0 0 0 0 0 0 0 11 0 1206.5815 Q15149;D3DWL0;Q96IE3 Q15149 3739 3749 PLEC;PLEC1 Plectin yes no 2 0.014383 40.589 1 2.2767 3.0334 NaN 1 Median NaN NaN NaN 0 0 Median 2.2767 3.0334 NaN 1 0 Median 4946900 1443000 3503900 0 0 0 4946900 1443000 3503900 920 1507 948 3566 5393 5393 688 1 AQLNIGNVLPVGTMPEGTIVCCLEEKPGDR AEGIHTGQFVYCGKKAQLNIGNVLPVGTMP EGTIVCCLEEKPGDRGKLARASGNYATVIS K A Q D R G 1 1 2 1 2 1 3 4 0 2 3 1 1 0 3 0 2 0 0 3 0 0 30 1 3266.6098 P62917;B4DVG7;E9PKZ0;E9PKU4;G3V1A1 P62917 94 123 RPL8 60S ribosomal protein L8 yes no 3 4.4105E-79 154.14 7 0.7685 1.0263 20.698 7 Median 0.7685 1.0263 20.698 7 0 Median NaN NaN NaN 0 0 Median 170520000 95192000 75332000 170520000 95192000 75332000 0 0 0 921 1417 949;950 3567;3568;3569;3570;3571;3572;3573 5394;5395;5396;5397;5398;5399;5400;5401;5402;5403;5404 5403 620 11 AQLPVMVIVTPQDR VEEQVEIRSGFLAARAQLPVMVIVTPQDRK RAQLPVMVIVTPQDRKNSVWTQDGPSAQIL R A Q D R K 1 1 0 1 0 2 0 0 0 1 1 0 1 0 2 0 1 0 0 3 0 0 14 0 1565.8599 Q9H6R4;A0A0A0MRW6;B4DF80;B3KPN5 Q9H6R4 942 955 NOL6 Nucleolar protein 6 yes no 2 2.203E-05 91.914 3 3 0.7557 1.1189 20.571 4 Median 0.94391 1.3164 2.1206 2 0 Median 0.60039 0.92677 5.7691 2 0 Median 56622000 32653000 23969000 10284000 3102200 7181400 46339000 29551000 16788000 922 1738 951;952 3574;3575;3576;3577;3578;3579 5405;5406;5407;5408;5409;5410;5411;5412;5413 5412 790 9 AQLSDYSDIVTTLDLAPPTK LIVDSVKELDSKTIRAQLSDYSDIVTTLDL YSDIVTTLDLAPPTKKLMMWKETGGVEKLF R A Q T K K 2 0 0 3 0 1 0 0 0 1 3 1 0 0 2 2 3 0 1 1 0 0 20 0 2147.0998 A0A024R9J0;O60216 A0A024R9J0 339 358 RAD21 Double-strand-break repair protein rad21 homolog yes no 2 7.6668E-26 168.69 3 0.48086 0.60829 0.00027022 2 Median 0.48086 0.60829 0.00027022 2 0 Median NaN NaN NaN 0 0 Median 14856000 10615000 4240700 14856000 10615000 4240700 0 0 0 923 223 953 3580;3581;3582 5414;5415;5416;5417;5418 5415 5 AQLSDYSDIVTTLDLAPPTKK LIVDSVKELDSKTIRAQLSDYSDIVTTLDL SDIVTTLDLAPPTKKLMMWKETGGVEKLFS R A Q K K L 2 0 0 3 0 1 0 0 0 1 3 2 0 0 2 2 3 0 1 1 0 0 21 1 2275.1947 A0A024R9J0;O60216 A0A024R9J0 339 359 RAD21 Double-strand-break repair protein rad21 homolog yes no 3 0.0016506 56.327 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1090600 633120 457450 1090600 633120 457450 0 0 0 924 223 954 3583 5419 5419 1 AQLSGLQLQPCLYK LFDFQKTGPPLVGPKAQLSGLQLQPCLYKR KAQLSGLQLQPCLYKRR_____________ K A Q Y K R 1 0 0 0 1 3 0 1 0 0 4 1 0 0 1 1 0 0 1 0 0 0 14 0 1617.8549 O43159;E9PPP6 O43159 441 454 RRP8 Ribosomal RNA-processing protein 8 yes no 2 1.3775E-06 129 4 0.6466 0.81309 13.574 4 Median 0.6466 0.81309 13.574 4 0 Median NaN NaN NaN 0 0 Median 23940000 13812000 10128000 23940000 13812000 10128000 0 0 0 925 1181 955 3584;3585;3586;3587 5420;5421;5422;5423;5424;5425;5426;5427 5424 8 AQLSSSLQEGVMQK PSCEVNRECSVFLSKAQLSSSLQEGVMQKF KAQLSSSLQEGVMQKFNGHDALPFIPADKL K A Q Q K F 1 0 0 0 0 3 1 1 0 0 2 1 1 0 0 3 0 0 0 1 0 0 14 0 1504.7555 O96028;D6R9V2;D6RIS1 O96028 51 64 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 2 7.8148E-05 68.536 3 1.0771 1.6363 17.544 3 Plateau NaN NaN NaN 0 0 Median 1.0771 1.6363 17.544 3 0 Plateau 29850000 14540000 15309000 0 0 0 29850000 14540000 15309000 926 1228 956 3588;3589;3590 5428;5429;5430;5431;5432 5428 468 5 AQLVLVGATFPEGVGQLLNK IAEGPADLEDPFNPKAQLVLVGATFPEGVG VGATFPEGVGQLLNKVASPDAVTTITSSKL K A Q N K V 2 0 1 0 0 2 1 3 0 0 4 1 0 1 1 0 1 0 0 3 0 0 20 0 2053.1572 Q9NUL7 Q9NUL7 324 343 DDX28 Probable ATP-dependent RNA helicase DDX28 yes yes 2 3.8886E-06 105.14 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5474800 5474800 0 5474800 5474800 0 0 0 0 927 1761 957 3591;3592 5433;5434 5434 2 AQLVVIAHDVDPIELVVFLPALCR RAGVNTVTTLVENKKAQLVVIAHDVDPIEL VDPIELVVFLPALCRKMGVPYCIIKGKARL K A Q C R K 3 1 0 2 1 1 1 0 1 2 4 0 0 1 2 0 0 0 0 5 0 0 24 0 2686.488 P62424;Q9BY74;Q5T8U2 P62424 152 175 RPL7A;RP-L7a 60S ribosomal protein L7a yes no 3 1.5819E-16 122.18 4 0.71493 0.99089 10.323 4 Median 0.71493 0.99089 10.323 4 0 Median NaN NaN NaN 0 0 Median 1046000000 587790000 458190000 1046000000 587790000 458190000 0 0 0 928 1411 958 3593;3594;3595;3596 5435;5436;5437;5438;5439;5440 5435 6 AQLYTTNTVK STAQKSKKGKRNFFKAQLYTTNTVKTDLPP RNFFKAQLYTTNTVKTDLPPPSSESEQIDL K A Q V K T 1 0 1 0 0 1 0 0 0 0 1 1 0 0 0 0 3 0 1 1 0 0 10 0 1137.603 H0YNU5;B2RAN0;P54132;Q3B7X0;H0YLV8 H0YNU5 196 205 BLM Bloom syndrome protein yes no 2 0.022533 43.185 1 0.97044 1.3383 NaN 1 Median NaN NaN NaN 0 0 Median 0.97044 1.3383 NaN 1 0 Median 4127200 2122300 2005000 0 0 0 4127200 2122300 2005000 929 725 959 3597 5441 5441 1 AQNDLIWNIKDELK KKEKDKDSKLEKALKAQNDLIWNIKDELKK KAQNDLIWNIKDELKKVCSTNDLKELLIFN K A Q L K K 1 0 2 2 0 1 1 0 0 2 2 2 0 0 0 0 0 1 0 0 0 0 14 1 1698.8941 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 240 253 PARP1 Poly [ADP-ribose] polymerase 1 yes no 3 0.00070433 48.823 2 0.28927 0.46231 6.5568 2 Median NaN NaN NaN 0 0 Median 0.28927 0.46231 6.5568 2 0 Median 36683000 26683000 9999500 0 0 0 36683000 26683000 9999500 930 107 960 3598;3599 5442;5443;5444;5445 5444 4 AQNTWGCGNSLR GAGATHSPPTDLVWKAQNTWGCGNSLRTAL VWKAQNTWGCGNSLRTALINSTGEEVAMRK K A Q L R T 1 1 2 0 1 1 0 2 0 0 1 0 0 0 0 1 1 1 0 0 0 0 12 0 1362.6099 P02545;W8QEH3;Q5TCI8;B4DFR3;A0A0C4DGC5 P02545 516 527 LMNA Prelamin-A/C;Lamin-A/C yes no 2 0.00010539 81.771 2 1.0868 1.5422 2.6078 2 Median NaN NaN NaN 0 0 Median 1.0868 1.5422 2.6078 2 0 Median 17087000 8079500 9007300 0 0 0 17087000 8079500 9007300 931 1229 961 3600;3601 5446;5447;5448;5449 5446 4 AQPLEDLAGFTELSETSGHTQESLTAGK EEEPSRRRPRAPKEKAQPLEDLAGFTELSE SETSGHTQESLTAGKATKIPCESPPLEVVD K A Q G K A 3 0 0 1 0 2 4 3 1 0 4 1 0 1 1 3 4 0 0 0 0 0 28 0 2916.3989 P46013 P46013 2673 2700 MKI67 Antigen KI-67 yes yes 3 4.7904E-43 144.73 4 2 0.91797 1.2052 11.264 6 Median 0.9095 1.1977 0.78584 4 0 Median 0.94783 1.489 0.15081 2 0 Median 3202200000 1635700000 1566500000 1851300000 949520000 901790000 1350900000 686200000 664710000 932 1342 962 3602;3603;3604;3605;3606;3607 5450;5451;5452;5453;5454;5455;5456;5457;5458;5459;5460;5461;5462;5463;5464 5462 15 AQPLEDLAGLK ASVTGSKRHPKTKEKAQPLEDLAGLKELFQ TKEKAQPLEDLAGLKELFQTPVCTDKPTTH K A Q L K E 2 0 0 1 0 1 1 1 0 0 3 1 0 0 1 0 0 0 0 0 0 0 11 0 1153.6343 P46013 P46013 1461 1471 MKI67 Antigen KI-67 yes no 2 0.0010931 89.886 4 4 0.93922 1.2441 19.506 8 Median 0.93994 1.2441 2.9994 4 0 Median 0.84283 1.3003 29.57 4 0 Median 1326100000 654960000 671180000 865880000 421800000 444080000 460260000 233160000 227110000 933 1342 963 3608;3609;3610;3611;3612;3613;3614;3615 5465;5466;5467;5468;5469;5470;5471;5472;5473;5474;5475;5476;5477;5478;5479;5480;5481;5482;5483 5474 19 AQPLSLEELLAK SKKDEEDEHGDKKPKAQPLSLEELLAKKKA KPKAQPLSLEELLAKKKAEEEAEAKPKFLS K A Q A K K 2 0 0 0 0 1 2 0 0 0 4 1 0 0 1 1 0 0 0 0 0 0 12 0 1310.7446 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56;F8VVA2 B3KY11 119 130 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.00035656 76.228 1 2 0.90925 1.3767 44.595 3 Median 0.52183 0.64696 NaN 1 0 Median 0.92507 1.3999 2.3652 2 0 Median 47986000 27068000 20918000 17114000 11872000 5242200 30872000 15196000 15676000 934 45 964 3616;3617;3618 5484;5485;5486;5487 5484 4 AQPSASLGVGYR TYRAQPSVSLGAAYRAQPSASLGVGYRTQP AYRAQPSASLGVGYRTQPMTAQAASYRAQP R A Q Y R T 2 1 0 0 0 1 0 2 0 0 1 0 0 0 1 2 0 0 1 1 0 0 12 0 1204.62 A0A0S2Z4Z0;Q96PK6;Q59GV2 A0A0S2Z4Z0 251 262 RBM14 RNA-binding protein 14 yes no 2 0.0028382 96.342 1 2 0.99775 1.4334 4.6136 2 Median NaN NaN NaN 0 0 Median 0.99775 1.4334 4.6136 2 0 Median 45475000 36819000 8655700 28602000 28602000 0 16872000 8216500 8655700 935 472 965 3619;3620;3621 5488;5489;5490;5491;5492 5488 5 AQPSVSLGAAYR ASYVAPLTAQPATYRAQPSVSLGAAYRAQP TYRAQPSVSLGAAYRAQPSASLGVGYRTQP R A Q Y R A 3 1 0 0 0 1 0 1 0 0 1 0 0 0 1 2 0 0 1 1 0 0 12 0 1218.6357 A0A0S2Z4Z0;Q96PK6;Q59GV2 A0A0S2Z4Z0 239 250 RBM14 RNA-binding protein 14 yes no 2 0.00034582 76.465 3 2 0.40124 0.54421 57.797 5 Median 0.39138 0.51761 4.8377 3 0 Median 1.0424 1.4854 2.8072 2 0 Median 59828000 36743000 23085000 36367000 25306000 11061000 23460000 11437000 12023000 936 472 966 3622;3623;3624;3625;3626 5493;5494;5495;5496;5497;5498;5499;5500;5501;5502;5503 5498 11 AQPSVSLGAPYR GYRTQPMTAQAASYRAQPSVSLGAPYRGQL SYRAQPSVSLGAPYRGQLASPSSQSAAASS R A Q Y R G 2 1 0 0 0 1 0 1 0 0 1 0 0 0 2 2 0 0 1 1 0 0 12 0 1244.6513 A0A0S2Z4Z0;Q96PK6;Q59GV2 A0A0S2Z4Z0 275 286 RBM14 RNA-binding protein 14 yes no 2 3.145E-05 89.247 3 2 0.4858 0.64595 47.964 5 Median 0.48286 0.6447 2.4271 3 0 Plateau 1.0718 1.5216 3.5539 2 0 Median 60256000 37068000 23188000 37185000 25099000 12086000 23071000 11969000 11101000 937 472 967 3627;3628;3629;3630;3631 5504;5505;5506;5507;5508;5509;5510;5511;5512;5513 5509 10 AQPTPSSSATQSKPTPVK ______________________________ TPSSSATQSKPTPVKPNYALKFTLAGHTKA R A Q V K P 2 0 0 0 0 2 0 0 0 0 0 2 0 0 4 4 3 0 0 1 0 0 18 1 1810.9425 P61964;V9GYQ5;V9GZ59 P61964 15 32 WDR5 WD repeat-containing protein 5 yes no 2;3 0.0011819 41.871 1 3 0.91694 1.3449 11.179 4 Median 0.86374 1.0962 NaN 1 0 Median 0.94898 1.3686 2.9625 3 0 Median 15815000 8047300 7767800 5638600 2658100 2980500 10176000 5389100 4787300 938 1394 968 3632;3633;3634;3635 5514;5515;5516;5517;5518 5514 5 AQPTPSSSATQSKPTPVKPNYALK ______________________________ TQSKPTPVKPNYALKFTLAGHTKAVSSVKF R A Q L K F 3 0 1 0 0 2 0 0 0 0 1 3 0 0 5 4 3 0 1 1 0 0 24 2 2497.3177 P61964;V9GYQ5;V9GZ59 P61964 15 38 WDR5 WD repeat-containing protein 5 yes no 3;4 0.00011886 54.008 4 4 0.94014 1.2504 25.472 8 Median 0.89891 1.0321 8.7955 4 0 Median 0.94665 1.6658 9.8728 4 0 Median 77653000 40603000 37050000 49660000 25664000 23995000 27993000 14939000 13055000 939 1394 969 3636;3637;3638;3639;3640;3641;3642;3643 5519;5520;5521;5522;5523;5524;5525;5526;5527;5528;5529;5530 5525 12 AQPVPHYGVPFKPQIPEAR PTKEDEEEDEPVVIKAQPVPHYGVPFKPQI PHYGVPFKPQIPEARTVEICPFSFDSRDKE K A Q A R T 2 1 0 0 0 2 1 1 1 1 0 1 0 1 5 0 0 0 1 2 0 0 19 1 2130.1374 Q643R0;Q9ULW0;B3KM90 Q643R0 513 531 HCTP4;TPX2 Targeting protein for Xklp2 yes no 4 3.2375E-07 70.942 4 2 0.81461 1.081 6.3684 6 Median 0.8384 1.1077 4.3315 4 0 Median 0.57974 1.0002 0.11105 2 0 Median 254980000 146700000 108270000 145420000 77824000 67593000 109560000 68877000 40682000 940 1581 970 3644;3645;3646;3647;3648;3649 5531;5532;5533;5534;5535;5536;5537;5538;5539;5540 5540 9 AQQIHSQTSQQYPLYDLDLGK LKKSLLATMKTELQKAQQIHSQTSQQYPLY QTSQQYPLYDLDLGKFGEKVTQLTDRWQRI K A Q G K F 1 0 0 2 0 5 0 1 1 1 3 1 0 0 1 2 1 0 2 0 0 0 21 0 2432.1972 P15924;Q4LE79;B4E2A0;B4DKX6 P15924 835 855 DSP;DSP variant protein Desmoplakin yes no 3 0.00090023 44.238 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13953000 13953000 0 13953000 13953000 0 0 0 0 941 1270 971 3650 5541 5541 1 AQQQEEQGSVNDVKEEEK WSVKPASSSFGSEAKAQQQEEQGSVNDVKE QEEQGSVNDVKEEEKEEKEVLPDQVEEEEE K A Q E K E 1 0 1 1 0 4 5 1 0 0 0 2 0 0 0 1 0 0 0 2 0 0 18 1 2073.9451 Q9Y4W2;B3KNR6 Q9Y4W2 552 569 LAS1L Ribosomal biogenesis protein LAS1L yes no 3 0.00034593 118.71 2 2 1.6653 2.4878 129.54 3 Plateau 0.21494 0.26221 NaN 1 0 Median 1.6935 2.4722 0.8889 2 0 Median 9582500 4356700 5225800 2546100 2102400 443690 7036400 2254300 4782100 942 1826 972 3651;3652;3653;3654 5542;5543;5544;5545 5542 3 AQQSLELIQSK TEQNERQKVAGDLHKAQQSLELIQSKIVKA DLHKAQQSLELIQSKIVKAAGDTTVIENSD K A Q S K I 1 0 0 0 0 3 1 0 0 1 2 1 0 0 0 2 0 0 0 0 0 0 11 0 1243.6772 A0A024R663;Q86UP2;G3V4Y7;B3KP76;B3KWP6;B7Z6P3;H0YJP2 A0A024R663 1286 1296 KTN1 Kinectin yes no 2 0.04437 42.718 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1866200 1866200 0 1866200 1866200 0 0 0 0 943 155 973 3655 5546 5546 1 AQSLAEQTSDTAGLESSTR WQKLRNEKHHIRVKKAQSLAEQTSDTAGLE AEQTSDTAGLESSTRSESGTDLREHSPSES K A Q T R S 3 1 0 1 0 2 2 1 0 0 2 0 0 0 0 4 3 0 0 0 0 0 19 0 1950.913 Q12986;A0JLR2 Q12986 121 139 NFX1 Transcriptional repressor NF-X1 yes no 2 0.00046665 69.716 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1459300 1459300 0 1459300 1459300 0 0 0 0 944 1460 974 3656 5547 5547 1 AQSLTTCEVCGACFETR AEVPHGSKQELQDLKAQSLTTCEVCGACFE SLTTCEVCGACFETRKGLSSHARSHLRQLG K A Q T R K 2 1 0 0 3 1 2 1 0 0 1 0 0 1 0 1 3 0 0 1 0 0 17 0 1988.839 B9EGQ5;M0QXA7 B9EGQ5 47 63 WIZ yes no 2 3.6091E-06 116.63 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 803310 0 803310 803310 0 803310 0 0 0 945 929 975 3657;3658 5548;5549 5549 2 AQSLVISPPAPSPR SGKQESGSEIHVEVKAQSLVISPPAPSPRK KAQSLVISPPAPSPRKTPVASDQRRRSCKT K A Q P R K 2 1 0 0 0 1 0 0 0 1 1 0 0 0 4 3 0 0 0 1 0 0 14 0 1418.7882 P46013;Q70L73 P46013 573 586 MKI67 Antigen KI-67 no no 2 8.6952E-22 139.76 4 2 0.82376 1.243 6.7615 6 Linear 0.87612 1.1789 3.6966 4 0 Linear 0.79343 1.2571 6.765 2 0 Median 178720000 97801000 80919000 107620000 57945000 49674000 71100000 39856000 31244000 946 1342;1604 976 3659;3660;3661;3662;3663;3664 5550;5551;5552;5553;5554;5555;5556;5557;5558;5559;5560;5561 5554 12 AQTEGINISEEALNHLGEIGTK MLYTPQEMKQIIKIRAQTEGINISEEALNH ISEEALNHLGEIGTKTTLRYSVQLLTPANL R A Q T K T 2 0 2 0 0 1 4 3 1 3 2 1 0 0 0 1 2 0 0 0 0 0 22 0 2323.1656 B5BUB1;Q9Y265;H7C4G5;J3QLR1 B5BUB1 379 400 RUVBL1 RuvB-like 1 yes no 3 1.4994E-26 148.19 3 2 0.64308 0.84019 38.182 5 Median 0.60876 0.79571 8.8577 3 0 Median 0.9753 1.5491 0.11432 2 0 Median 426540000 241280000 185260000 250120000 153330000 96792000 176420000 87954000 88464000 947 896 977 3665;3666;3667;3668;3669 5562;5563;5564;5565;5566;5567;5568;5569;5570;5571 5565 10 AQTGAPCLSFDIVR EELVMDEEAYVLYHRAQTGAPCLSFDIVRD RAQTGAPCLSFDIVRDHLGDNRTELPLTLY R A Q V R D 2 1 0 1 1 1 0 1 0 1 1 0 0 1 1 1 1 0 0 1 0 0 14 0 1533.761 Q8TCJ8;Q8NCK5;B2RDP6;Q9BQ67 Q8TCJ8 60 73 DKFZp564C172;GRWD1 Glutamate-rich WD repeat-containing protein 1 yes no 2 4.4852E-06 124.6 3 2 0.57813 0.81558 11.304 4 Median 0.65002 0.87527 16.103 2 0 Median 0.54414 0.80696 7.616 2 0 Median 60367000 41368000 18999000 30038000 23147000 6891200 30329000 18221000 12108000 948 739 978 3670;3671;3672;3673;3674 5572;5573;5574;5575;5576;5577;5578;5579 5574 8 AQTLPTSVVTITSESSPGKR HEVSASTQSTPASSRAQTLPTSVVTITSES TSVVTITSESSPGKREKDKEKDKEKRFSLF R A Q K R E 1 1 0 0 0 1 1 1 0 1 1 1 0 0 2 4 4 0 0 2 0 0 20 1 2058.0957 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;B4DIF8 B2ZZ89 2326 2345 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 0.00074983 62.002 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12799000 0 12799000 12799000 0 12799000 0 0 0 949 346 979 3675;3676;3677 5580;5581;5582 5582 3 AQTSLESQFTDRYPDNLK KIQQSYKKLLRKEKKAQTSLESQFTDRYPD SLESQFTDRYPDNLKHLYLAEEERHRKQAR K A Q L K H 1 1 1 2 0 2 1 0 0 0 2 1 0 1 1 2 2 0 1 0 0 0 18 1 2112.0124 Q9P031;F8VNY5 Q9P031 77 94 CCDC59 Thyroid transcription factor 1-associated protein 26 yes no 3 0.00011016 49.049 2 1.2121 1.5776 3.0237 2 Median 1.2121 1.5776 3.0237 2 0 Median NaN NaN NaN 0 0 Median 27953000 11983000 15970000 27953000 11983000 15970000 0 0 0 950 1774 980 3678;3679 5583;5584;5585 5584 3 AQTTAQASTPGQPPPQPQAPSHAAGQSALPQR ASSTAASPAHPAKLRAQTTAQASTPGQPPP QAPSHAAGQSALPQRLVLPSQAQARLPSGE R A Q Q R L 7 1 0 0 0 7 0 2 1 0 1 0 0 0 7 3 3 0 0 0 0 0 32 0 3175.5759 Q96L91 Q96L91 1556 1587 EP400 E1A-binding protein p400 yes yes 3 0.0063908 21.822 1 1 0.70808 1.0169 74.466 2 Median 0.43647 0.6006 NaN 1 0 Median 1.1487 1.7217 NaN 1 0 Median 11716000 6367600 5348300 4624100 3137000 1487100 7091800 3230600 3861200 951 1692 981 3680;3681 5586;5587 5587 2 AQVADVVVSR DPATHRQKLYTLQDKAQVADVVVSRWLRVT TLQDKAQVADVVVSRWLRVTVAGGVHISGL K A Q S R W 2 1 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 4 0 0 10 0 1042.5771 A0A0U1RQF0;P49327 A0A0U1RQF0 1073 1082 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0021374 72.643 1 0.7657 1.044 NaN 1 Median 0.7657 1.044 NaN 1 0 Median NaN NaN NaN 0 0 Median 9432600 4855800 4576700 9432600 4855800 4576700 0 0 0 952 486 982 3682 5588;5589 5589 2 AQVEQELTTLR MEKHKKFAEQTLRQKAQVEQELTTLRLQLE LRQKAQVEQELTTLRLQLEETDHQKNLLDE K A Q L R L 1 1 0 0 0 2 2 0 0 0 2 0 0 0 0 0 2 0 0 1 0 0 11 0 1286.683 Q15149 Q15149 2319 2329 PLEC Plectin yes yes 2 0.00019538 85.377 4 0.89873 1.2039 2.3596 4 Median 0.89873 1.2039 2.3596 4 0 Median NaN NaN NaN 0 0 Median 92033000 46960000 45073000 92033000 46960000 45073000 0 0 0 953 1507 983 3683;3684;3685;3686 5590;5591;5592;5593;5594 5594 5 AQVFSCPACR CQHNVCKDCLDRSFRAQVFSCPACRYDLGR DRSFRAQVFSCPACRYDLGRSYAMQVNQPL R A Q C R Y 2 1 0 0 2 1 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 10 0 1194.5274 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9;B4E0F9;Q96PU4 A0A087WVR3 767 776 UHRF1;UHRF2 E3 ubiquitin-protein ligase UHRF1;E3 ubiquitin-protein ligase UHRF2 no no 2 0.036723 46.891 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 954 337;1697 984 3687 5595 5595 1 AQVIYTR ELLSKGLIKLVSKHRAQVIYTRNTKGGDAP IKLVSKHRAQVIYTRNTKGGDAPAAGEDA_ R A Q T R N 1 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 1 1 0 0 7 0 849.47085 P62851 P62851 105 111 RPS25 40S ribosomal protein S25 yes yes 2 0.010338 117.16 4 0.77735 1.0616 6.6006 4 Median 0.77735 1.0616 6.6006 4 0 Median NaN NaN NaN 0 0 Median 179650000 97680000 81966000 179650000 97680000 81966000 0 0 0 955 1413 985 3688;3689;3690;3691 5596;5597;5598;5599 5596 4 AQVQLQLFK EEADRYQRLKDEVVRAQVQLQLFKLYHNEV KDEVVRAQVQLQLFKLYHNEVEIEKLNKEL R A Q F K L 1 0 0 0 0 3 0 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 9 0 1073.6233 Q14683;G8JLG1;Q6P2R1;Q6MZR8;A8K7A6;Q68EN4;H0Y7K8;Q5H934 Q14683 219 227 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.034428 48.756 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 956 1492 986 3692 5600 5600 1 AQVSLLIR SVVAKFNASQLITQRAQVSLLIRRELTERA SQLITQRAQVSLLIRRELTERAKDFSLILD R A Q I R R 1 1 0 0 0 1 0 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 8 0 898.56 J3KPX7;Q99623;F5GY37;B4DW05;F5GWA7;F5H3X6 J3KPX7 158 165 PHB2 Prohibitin-2 yes no 1;2 0.0012175 166.68 6 2 0.57776 0.7874 54.013 7 Median 0.57635 0.7713 5.1295 5 0 Median 1.513 2.3066 8.0254 2 0 Median 272790000 162400000 110390000 236560000 149310000 87247000 36226000 13087000 23140000 957 1133 987 3693;3694;3695;3696;3697;3698;3699;3700 5601;5602;5603;5604;5605;5606;5607;5608;5609;5610;5611;5612;5613;5614;5615 5602 15 AQYDELAR APKSQDLAKIMADIRAQYDELARKNREELD KIMADIRAQYDELARKNREELDKYWSQQIE R A Q A R K 2 1 0 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 8 0 964.46141 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965 F8VZY9 254 261 KRT18 Keratin, type I cytoskeletal 18 yes no 2 8.3912E-08 157.9 4 2 0.22822 0.31331 105.11 6 Median 0.21721 0.29657 7.9236 4 0 Median 1.4351 2.2464 4.4775 2 0 Median 504100000 388750000 115350000 446400000 364580000 81825000 57696000 24173000 33524000 958 252 988 3701;3702;3703;3704;3705;3706 5616;5617;5618;5619;5620;5621;5622;5623;5624;5625 5619 10 AQYDELARK APKSQDLAKIMADIRAQYDELARKNREELD IMADIRAQYDELARKNREELDKYWSQQIEE R A Q R K N 2 1 0 1 0 1 1 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 9 1 1092.5564 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965 F8VZY9 254 262 KRT18 Keratin, type I cytoskeletal 18 yes no 3 0.0013311 90.601 4 0.25177 0.32935 2.1744 2 Median 0.25177 0.32935 2.1744 2 0 Median NaN NaN NaN 0 0 Median 48948000 40440000 8508400 48948000 40440000 8508400 0 0 0 959 252 989 3707;3708;3709;3710 5626;5627;5628;5629 5627 4 AQYEDIANR NSRSLDMDSIIAEVKAQYEDIANRSRAEAE IIAEVKAQYEDIANRSRAEAESMYQIKYEE K A Q N R S 2 1 1 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 9 0 1078.5043 CON__P05787;P05787;Q969I0;F8VUG2;Q7L4M3;CON__O95678;O95678 CON__P05787 265 273 KRT8;KRT75 Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 75 no no 2 1.3142E-11 178.99 3 2 0.23976 0.32615 128.76 5 Median 0.21799 0.30291 5.2191 3 0 Median 1.9805 3.2254 2.6707 2 0 Median 752670000 535740000 216930000 598570000 484510000 114060000 154100000 51227000 102870000 + 960 955;946 990 3711;3712;3713;3714;3715 5630;5631;5632;5633;5634;5635;5636;5637 5631 8 AQYEDIAQK NNRSLDLDSIIAEVKAQYEDIAQKSKAEAE IIAEVKAQYEDIAQKSKAEAESLYQSKYEE K A Q Q K S 2 0 0 1 0 2 1 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 9 0 1064.5138 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;H6VRF9;H6VRG2 H6VRG3 356 364 KRT1 Keratin, type II cytoskeletal 1 no no 1;2 4.2909E-06 145.72 4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 708880000 708880000 0 455130000 455130000 0 253760000 253760000 0 + 961 1113;1114 991 3716;3717;3718;3719;3720;3721 5638;5639;5640;5641;5642;5643 5638 6 AQYEEIANR NNRNLDLDSIIAEVKAQYEEIANRSRTEAE IIAEVKAQYEEIANRSRTEAESWYQTKYEE K A Q N R S 2 1 1 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 9 0 1092.52 CON__P13647;P13647;B4E1T1;B4DL32;H0YI76;H0YIN9 CON__P13647 344 352 KRT5 Keratin, type II cytoskeletal 5 yes no 2 7.4286E-05 105.81 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 87545000 87545000 0 47613000 47613000 0 39932000 39932000 0 + 962 961 992 3722;3723;3724 5644;5645;5646 5645 3 AQYEEIAQR NNRNLDLDSIIAEVKAQYEEIAQRSRAEAE IIAEVKAQYEEIAQRSRAEAESWYQTKYEE K A Q Q R S 2 1 0 0 0 2 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 9 0 1106.5356 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;B4DRY0;CON__P04259;B4DKV4;CON__P35908;P35908;Q01546 B4DRR0 310 318 KRT6A;KRT6C;KRT2;KRT76 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral no no 2 0.00012439 130.27 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80675000 80675000 0 16113000 16113000 0 64562000 64562000 0 + 963 459;953;964 993 3725;3726;3727 5647;5648;5649 5647 3 ARDINTEQGQNVLEILQDCFEEK HLKNGYRRRFCRPSRARDINTEQGQNVLEI GQNVLEILQDCFEEKSLANDFSTNSTKSVP R A R E K S 1 1 2 2 1 3 4 1 0 2 2 1 0 1 0 0 1 0 0 1 0 0 23 1 2748.3025 Q03188 Q03188 23 45 CENPC Centromere protein C yes yes 3 1.4917E-13 114.66 4 0.72422 0.96238 9.7753 4 Median 0.72422 0.96238 9.7753 4 0 Median NaN NaN NaN 0 0 Median 36022000 20469000 15553000 36022000 20469000 15553000 0 0 0 964 1439 994 3728;3729;3730;3731 5650;5651;5652;5653;5654;5655;5656;5657 5652 8 ARDSLIQSLATQLELDGFER GRLQLQADRHQEHIRARDSLIQSLATQLEL IQSLATQLELDGFERGPFSERQIKNFHKLV R A R E R G 2 2 0 2 0 2 2 1 0 1 4 0 0 1 0 2 1 0 0 0 0 0 20 1 2261.1652 Q92878;E7EN38;Q32P42;E7ESD9;A8K3I2 Q92878 366 385 RAD50 DNA repair protein RAD50 yes no 3 5.8272E-05 111.4 2 0.52663 0.66815 NaN 1 Median 0.52663 0.66815 NaN 1 0 Median NaN NaN NaN 0 0 Median 5426100 3604200 1821900 5426100 3604200 1821900 0 0 0 965 1676 995 3732;3733 5658;5659;5660 5660 3 ARENPSEEAQNLVEFTDEEGYGR EICVPMSVEFEELLKARENPSEEAQNLVEF AQNLVEFTDEEGYGRYLDLHDCYLKYINLK K A R G R Y 2 2 2 1 0 1 6 2 0 0 1 0 0 1 1 1 1 0 1 1 0 0 23 1 2639.1736 Q53HM6;B3KY12;A8K7V1;A8K566;Q12874;B4DW90 Q53HM6 116 138 SF3A3 Splicing factor 3A subunit 3 yes no 3 0.00055544 69.913 3 0.55957 0.75732 62.218 2 Median 0.55957 0.75732 62.218 2 0 Median NaN NaN NaN 0 0 Median 16164000 10970000 5194200 16164000 10970000 5194200 0 0 0 966 614 996 3734;3735;3736 5661;5662;5663;5664 5664 3 ARFEELCSDLFR DSLFEGIDFYTSITRARFEELCSDLFRSTL ITRARFEELCSDLFRSTLEPVEKALRDAKL R A R F R S 1 2 0 1 1 0 2 0 0 0 2 0 0 2 0 1 0 0 0 0 0 0 12 1 1541.7297 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DI39;B4DWK5;B4DNT8;B4DFN9;B4DVU9;B4E1S9;B4E388;V9GZ37;B3KTT5;B4DNV4;Q53FC7;B3KSM6;B2R6X5;P17066;B4DHP5;P48741 A8K5I0 300 311 HEL-S-103;HSPA1B;HSPA1A;HSPA6;HSPA7 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 no no 2;3 9.5664E-05 136.5 4 1 0.74527 1.0277 13.295 5 Median 0.73184 0.99547 11.008 4 0 Median 0.92902 1.2669 NaN 1 0 Median 74893000 40844000 34049000 68827000 37365000 31462000 6065700 3479600 2586100 967 439;701 997 3737;3738;3739;3740;3741 5665;5666;5667;5668;5669;5670;5671;5672;5673 5667 9 ARFEELNADLFR DSLYEGIDFYTSITRARFEELNADLFRGTL ITRARFEELNADLFRGTLDPVEKALRDAKL R A R F R G 2 2 1 1 0 0 2 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 12 1 1479.747 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;Q53HF2;E9PN89;E9PNE6;B4E1Q1;A8K7Q2 V9HW22 300 311 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein no no 2;3 2.6E-12 139.46 3 2 0.56931 0.78931 59.794 5 Median 0.53001 0.73464 6.733 3 0 Median 1.4044 2.1877 0.30243 2 0 Median 149410000 77818000 71589000 65940000 42303000 23637000 83467000 35515000 47952000 968 1253 998 3742;3743;3744;3745;3746 5674;5675;5676;5677;5678;5679;5680 5679 7 ARLPEELR CVISKTARLLSSEDRARLPEELRSLVQKRY LLSSEDRARLPEELRSLVQKRYELLEHKKR R A R L R S 1 2 0 0 0 0 2 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 8 1 982.55598 Q9UIG0 Q9UIG0 512 519 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 0.031985 45.081 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8137600 0 8137600 8137600 0 8137600 0 0 0 969 1786 999 3747 5681 5681 1 ARPFPDGLAEDIDKGEVSAR CLSKSPNKHNRLYMKARPFPDGLAEDIDKG DGLAEDIDKGEVSARQELKQRARYLAEKYE K A R A R Q 3 2 0 3 0 0 2 2 0 1 1 1 0 1 2 1 0 0 0 1 0 0 20 2 2142.0705 P13639;Q8TA90;B4DPU3;Q6W6M8 P13639 606 625 EEF2 Elongation factor 2 yes no 3;4 6.6462E-06 70.121 6 4 0.57929 0.70755 134.67 8 Median 0.55497 0.66958 13.678 6 0 Median 7.3174 12.382 18.199 2 0 Median 130940000 53446000 77495000 77540000 49191000 28350000 53400000 4255400 49145000 970 1264 1000 3748;3749;3750;3751;3752;3753;3754;3755;3756;3757 5682;5683;5684;5685;5686;5687;5688;5689;5690;5691;5692;5693;5694 5694 13 ARPNTVISQEPFVPK LEEELRQQKEAACFKARPNTVISQEPFVPK ARPNTVISQEPFVPKKEKKSVAEGLSGSLV K A R P K K 1 1 1 0 0 1 1 0 0 1 0 1 0 1 3 1 1 0 0 2 0 0 15 1 1681.9152 Q643R0;Q9ULW0;B3KM90;Q96FC3 Q643R0 627 641 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2;3 1.0143E-18 137.73 7 3 0.81348 1.0769 9.1208 10 Median 0.82254 1.1154 9.6195 7 0 Median 0.61262 1.0476 7.8388 3 0 Median 242050000 146190000 95865000 123710000 70279000 53432000 118340000 75912000 42433000 971 1581 1001 3758;3759;3760;3761;3762;3763;3764;3765;3766;3767 5695;5696;5697;5698;5699;5700;5701;5702;5703;5704;5705;5706;5707;5708;5709;5710;5711 5709 17 ARPPEDLPSEIVDFVLK PGVVRAGVLGAAGDRARPPEDLPSEIVDFV PPEDLPSEIVDFVLKNLGGPGDGGAGPREE R A R L K N 1 1 0 2 0 0 2 0 0 1 2 1 0 1 3 1 0 0 0 2 0 0 17 1 1924.0306 Q9UMN6 Q9UMN6 2103 2119 KMT2B Histone-lysine N-methyltransferase 2B yes yes 3 0.015356 25.586 1 0.75352 0.97184 NaN 1 Median 0.75352 0.97184 NaN 1 0 Median NaN NaN NaN 0 0 Median 4717300 2268500 2448700 4717300 2268500 2448700 0 0 0 972 1794 1002 3768 5712 5712 1 ARPSQFPEQSSSAQQNAR NDPPSRDNRVVGSARARPSQFPEQSSSAQQ SQFPEQSSSAQQNARRKSNCVKEVEKLQEK R A R A R R 3 2 1 0 0 4 1 0 0 0 0 0 0 1 2 4 0 0 0 0 0 0 18 1 1987.946 B0AZS5;D6R9M0 B0AZS5 91 108 KIF2A Kinesin-like protein yes no 3 1.5008E-10 115.2 3 2 0.89345 1.2161 14.386 5 Median 0.98378 1.2557 2.547 3 0 Plateau 0.77999 1.037 19.909 2 0 Median 20491000 10514000 9977300 11821000 5639400 6181200 8670400 4874300 3796100 973 664 1003 3769;3770;3771;3772;3773 5713;5714;5715;5716;5717;5718;5719;5720;5721;5722;5723 5716 10 ARQEELYSELQAR LTGLSLLPLSEKAARARQEELYSELQARET ARARQEELYSELQARETFEKTPVEVPVGGF R A R A R E 2 2 0 0 0 2 3 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 13 1 1591.7954 Q15149;D3DWL0 Q15149 3356 3368 PLEC;PLEC1 Plectin yes no 3 0.00025405 49.298 1 0.65838 0.87952 NaN 1 Median 0.65838 0.87952 NaN 1 0 Median NaN NaN NaN 0 0 Median 15332000 8464900 6866800 15332000 8464900 6866800 0 0 0 974 1507 1004 3774 5724 5724 1 ARSDEGQLSPATR GLHQSIEEFRAKIERARSDEGQLSPATRGA ERARSDEGQLSPATRGAYRDCLGRLDLQYA R A R T R G 2 2 0 1 0 1 1 1 0 0 1 0 0 0 1 2 1 0 0 0 0 0 13 1 1386.6852 Q15149;E9PMV1 Q15149 712 724 PLEC Plectin yes no 3 0.0092128 57.267 2 1.0668 1.4365 32.835 2 Median 1.0668 1.4365 32.835 2 0 Median NaN NaN NaN 0 0 Median 3403400 1584000 1819400 3403400 1584000 1819400 0 0 0 975 1507 1005 3775;3776 5725;5726 5725 2 ARTPLEQEIFNLLHK EPAIAPIEHVLSGWKARTPLEQEIFNLLHK ARTPLEQEIFNLLHKNKQPVTDPLLTPVEK K A R H K N 1 1 1 0 0 1 2 0 1 1 3 1 0 1 1 0 1 0 0 0 0 0 15 1 1807.9945 Q9BVJ6;B4E343;Q08E77;A0A024RDV0;Q5TAP6 Q9BVJ6 180 194 UTP14A;UTP14C;hCG_1811699 U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C yes no 3;4 9.0518E-07 120.21 4 2 0.92419 1.3723 84.128 4 Median 1.0726 1.4084 16.616 2 0 Median 0.36905 0.63824 121.21 2 0 Median 195350000 103930000 91419000 35150000 19978000 15172000 160200000 83954000 76247000 976 1719 1006 3777;3778;3779;3780;3781;3782 5727;5728;5729;5730;5731;5732 5727 6 ARVEELDRK LEQYNKLDQDLNEVKARVEELDRKYYEVKN DLNEVKARVEELDRKYYEVKNKKDELQSER K A R R K Y 1 2 0 1 0 0 2 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 9 2 1114.6095 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 446 454 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 3 0.04482 34.755 1 0.5438 0.67267 NaN 1 Median 0.5438 0.67267 NaN 1 0 Median NaN NaN NaN 0 0 Median 10446000 6569900 3876100 10446000 6569900 3876100 0 0 0 977 663 1007 3783 5733 5733 1 ASAALLDK RRLRDLPERDQFRVRASAALLDKLYALGLV RDQFRVRASAALLDKLYALGLVPTRGSLEL R A S D K L 3 0 0 1 0 0 0 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 8 0 787.44397 Q9NV31 Q9NV31 75 82 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 2 0.018072 60.118 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8655400 8655400 0 8655400 8655400 0 0 0 0 978 1762 1008 3784 5734 5734 1 ASAEGPLLGPEAAPSGEGAGSK KVPEVTEKKNKKLKKASAEGPLLGPEAAPS LGPEAAPSGEGAGSKGEAVLRPGLDAEPEL K A S S K G 5 0 0 0 0 0 3 5 0 0 2 1 0 0 3 3 0 0 0 0 0 0 22 0 1951.9487 C9JQV0;Q9BRJ6 C9JQV0 22 43 C7orf50 Uncharacterized protein C7orf50 yes no 2 0.02614 69.379 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 979 944 1009 3785 5735 5735 1 ASAETPAEEQELLTQVCGDVLSTCEHR EVISSAVDALQRLCRASAETPAEEQELLTQ LTQVCGDVLSTCEHRLSNIVLKENGTGNMD R A S H R L 3 1 0 1 2 2 5 1 1 0 3 0 0 0 1 2 3 0 0 2 0 0 27 0 3029.3706 P42695;G3V1A9 P42695 808 834 NCAPD3 Condensin-2 complex subunit D3 yes no 3 3.1555E-32 147.08 4 1 0.7471 1.012 8.6517 4 Median 0.7471 1.012 8.6517 4 0 Median NaN NaN NaN 0 0 Median 99304000 61643000 37661000 86455000 48795000 37661000 12849000 12849000 0 980 1338 1010 3786;3787;3788;3789;3790 5736;5737;5738;5739;5740;5741;5742;5743;5744;5745;5746 5737 11 ASAFALQEQPVVNAVIDDTTK KKHNLKLGFMSAFVKASAFALQEQPVVNAV QEQPVVNAVIDDTTKEVVYRDYIDISVAVA K A S T K E 4 0 1 2 0 2 1 0 0 1 1 1 0 1 1 1 2 0 0 3 0 0 21 0 2216.1325 Q6IBS5;A0A024R6C9;P36957;Q86TW7;Q86TQ8 Q6IBS5 287 307 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes no 2 4.99E-08 113.47 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1128400 1128400 0 1128400 1128400 0 0 0 0 981 158 1011 3791 5747 5747 1 ASAGAEQTPGPLSQSPGLVK AKAFLYEPTTQASGRASAGAEQTPGPLSQS EQTPGPLSQSPGLVKQAKQMVGGQQLPALA R A S V K Q 3 0 0 0 0 2 1 3 0 0 2 1 0 0 3 3 1 0 0 1 0 0 20 0 1893.9796 B2RWP5;Q96L73;Q658U6;Q9H6B5;A0A1D8GZ55;A0A1D8GZ56;Q9H6H8 B2RWP5 2290 2309 NSD1;DKFZp666C163 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 2 1.6906E-15 160.84 1 0.73062 0.93806 NaN 1 Median 0.73062 0.93806 NaN 1 0 Median NaN NaN NaN 0 0 Median 1792200 942030 850160 1792200 942030 850160 0 0 0 982 749 1012 3792 5748;5749 5749 2 ASAISVTVLNVIEGPVFRPGSK KAEFHHSIMSQYKLKASAISVTVLNVIEGP VLNVIEGPVFRPGSKTYVVTGNMGSNDKVG K A S S K T 2 1 1 0 0 0 1 2 0 2 1 1 0 1 2 3 1 0 0 4 0 0 22 1 2240.2529 Q02413 Q02413 369 390 DSG1 Desmoglein-1 yes yes 3 7.0756E-08 110.6 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3463100 3463100 0 3463100 3463100 0 0 0 0 983 1435 1013 3793;3794;3795 5750;5751;5752 5751 3 ASASGSGAQVGGPISSGSSASSVTVTR SRTVLCGTCGQPADKASASGSGAQVGGPIS PISSGSSASSVTVTRSYRSVGGSGGGSFGD K A S T R S 4 1 0 0 0 1 0 5 0 1 0 0 0 0 1 9 2 0 0 3 0 0 27 0 2364.1517 P02545;A0A0C4DGC5 P02545 598 624 LMNA Prelamin-A/C;Lamin-A/C yes no 2 7.1048E-127 254.71 4 2 0.67532 0.91291 56.605 6 Median 0.63027 0.85499 7.5495 4 0 Median 1.5792 2.5724 2.8555 2 0 Median 291710000 145800000 145910000 142500000 87560000 54937000 149210000 58241000 90973000 984 1229 1014 3796;3797;3798;3799;3800;3801 5753;5754;5755;5756;5757;5758;5759;5760;5761;5762;5763;5764 5757 12 ASAVSELSPR KPWPDATYGTGSASRASAVSELSPRERSPA GSASRASAVSELSPRERSPALKSPLQSVVV R A S P R E 2 1 0 0 0 0 1 0 0 0 1 0 0 0 1 3 0 0 0 1 0 0 10 0 1015.5298 Q9Y2W1;Q7Z5U1;Q05D20;Q6P0P7;Q6PJV4 Q9Y2W1 236 245 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 2 0.0095406 54.416 1 0.40314 0.53624 NaN 1 Median 0.40314 0.53624 NaN 1 0 Median NaN NaN NaN 0 0 Median 17208000 11443000 5765200 17208000 11443000 5765200 0 0 0 985 1809 1015 3802 5765 5765 1 ASCASIDIEDATQHLR ______________________________ SCASIDIEDATQHLRDILKLDRPAGGPSAE M A S L R D 3 1 0 2 1 1 1 0 1 2 1 0 0 0 0 2 1 0 0 0 0 0 16 0 1785.8316 Q6P2E9 Q6P2E9 2 17 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 2 4.4927E-05 99.844 1 0.52274 0.73705 NaN 1 Median 0.52274 0.73705 NaN 1 0 Median NaN NaN NaN 0 0 Median 1854500 1234600 619940 1854500 1234600 619940 0 0 0 986 1591 1016 3803 5766 5766 1 ASDPGLPAEEPK GLPDGRFHLPPRIHRASDPGLPAEEPKEKS IHRASDPGLPAEEPKEKSSRKVAEPELMGT R A S P K E 2 0 0 1 0 0 2 1 0 0 1 1 0 0 3 1 0 0 0 0 0 0 12 0 1209.5877 Q53SY7;F8VPD4;P27708 Q53SY7 1784 1795 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.014263 41.704 1 0.18633 0.23611 NaN 1 Median 0.18633 0.23611 NaN 1 0 Median NaN NaN NaN 0 0 Median 6136600 5188400 948130 6136600 5188400 948130 0 0 0 987 1060 1017 3804 5767 5767 1 ASDQLQVGVEFEASTR VTLGQAGMHATYYHKASDQLQVGVEFEAST SDQLQVGVEFEASTRMQDTSVSFGYQLDLP K A S T R M 2 1 0 1 0 2 2 1 0 0 1 0 0 1 0 2 1 0 0 2 0 0 16 0 1735.8377 O96008;K7EKG4 O96008 278 293 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes no 2 1.4869E-13 148.96 4 0.65586 0.87556 7.4723 3 Median 0.65586 0.87556 7.4723 3 0 Median NaN NaN NaN 0 0 Median 18516000 10820000 7695400 18516000 10820000 7695400 0 0 0 988 1226 1018 3805;3806;3807;3808 5768;5769;5770;5771;5772;5773;5774;5775;5776 5769 9 ASDSAEAIEAFQLTPQQQHLIR PISDDDCPSASKVYKASDSAEAIEAFQLTP IEAFQLTPQQQHLIREDCQNQKLWDEVLSH K A S I R E 4 1 0 1 0 4 2 0 1 2 2 0 0 1 1 2 1 0 0 0 0 0 22 0 2452.2347 Q96PU4 Q96PU4 680 701 UHRF2 E3 ubiquitin-protein ligase UHRF2 yes yes 3 1.0267E-06 99.413 2 0.58716 0.80588 NaN 1 Median 0.58716 0.80588 NaN 1 0 Median NaN NaN NaN 0 0 Median 4760000 3315500 1444500 4760000 3315500 1444500 0 0 0 989 1697 1019 3809;3810 5777;5778 5777 2 ASDTSSETVFGK THGSVPSDPLGRADKASDTSSETVFGKRGH ADKASDTSSETVFGKRGHVLGNGSQVTQAA K A S G K R 1 0 0 1 0 0 1 1 0 0 0 1 0 1 0 3 2 0 0 1 0 0 12 0 1227.5619 A0A024RAC0;Q86V48 A0A024RAC0 530 541 LUZP1 Leucine zipper protein 1 yes no 2 7.1759E-05 130.41 3 1.0779 1.3598 21.364 2 Median 1.0779 1.3598 21.364 2 0 Median NaN NaN NaN 0 0 Median 14655000 5760400 8894500 14655000 5760400 8894500 0 0 0 990 238 1020 3811;3812;3813 5779;5780;5781 5780 3 ASEIMVDDEELAQHPATTEDIR TDFLRAANPVDFLSKASEIMVDDEELAQHP DEELAQHPATTEDIRVCCQDIRVLGRKELR K A S I R V 3 1 0 3 0 1 4 0 1 2 1 0 1 0 1 1 2 0 0 1 0 0 22 0 2469.1329 Q8IY81;B4DKU3 Q8IY81 270 291 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 3 3.7675E-17 106.73 7 2 0.6547 0.97194 17.843 7 Median 0.66806 0.88417 18.816 5 0 Median 0.64694 1.0546 0.053145 2 0 Median 180550000 105860000 74687000 24625000 15049000 9576100 155930000 90815000 65110000 991 1628 1021;1022 3814;3815;3816;3817;3818;3819;3820;3821;3822 5782;5783;5784;5785;5786;5787;5788;5789;5790;5791;5792;5793;5794 5794 727 13 ASELATLIQTK FLWVGEFANVIEKAKASELATLIQTKRELG EKAKASELATLIQTKRELGCRATYIQTIEE K A S T K R 2 0 0 0 0 1 1 0 0 1 2 1 0 0 0 1 2 0 0 0 0 0 11 0 1173.6605 O95425;B4E3N7;B4E3H1;A0A0J9YWY6;Q659E9;B4DXQ4 O95425 1496 1506 SVIL;DKFZp586H1823 Supervillin yes no 2 0.010017 66.056 2 1.2662 1.6343 6.7065 2 Median 1.2662 1.6343 6.7065 2 0 Median NaN NaN NaN 0 0 Median 8353800 4095100 4258700 8353800 4095100 4258700 0 0 0 992 1220 1023 3823;3824 5795;5796 5796 2 ASELHLLETPLVVK PSSSQLKGSPQAISRASELHLLETPLVVKK RASELHLLETPLVVKKAKSLAMSVTTSGFS R A S V K K 1 0 0 0 0 0 2 0 1 0 4 1 0 0 1 1 1 0 0 2 0 0 14 0 1547.8923 Q8WYP5;B3KVE5;B3KTD2 Q8WYP5 1167 1180 AHCTF1 Protein ELYS yes no 2;3 9.6848E-10 101.93 6 4 0.75592 0.93619 18.707 9 Median 0.87612 1.0891 14.701 5 0 Median 0.52342 0.80476 12.891 4 0 Median 250120000 144500000 105620000 128590000 67751000 60840000 121530000 76750000 44782000 993 1670 1024 3825;3826;3827;3828;3829;3830;3831;3832;3833;3834 5797;5798;5799;5800;5801;5802;5803;5804;5805;5806;5807;5808;5809 5809 13 ASEVEEILDGNDEK DHGYTTLATSVTLLKASEVEEILDGNDEKY KASEVEEILDGNDEKYKAVSISTEPPTYLR K A S E K Y 1 0 1 2 0 0 4 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 14 0 1546.6999 Q9H836;G5E975;Q12824;B5MCL5;Q86WI8;A0A0U1RQQ2;Q86WI7;A0A0U1RRB8;C9JTA6;A0A0G2JSE9;B4E117;B4DRT1 Q9H836 84 97 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 yes no 2 1.5517E-17 139.32 4 2 0.70401 0.90191 44.017 6 Median 0.63258 0.80802 13.222 4 0 Median 1.2218 1.8436 2.6814 2 0 Median 67566000 35158000 32408000 28910000 17663000 11247000 38656000 17495000 21161000 994 1081 1025 3835;3836;3837;3838;3839;3840 5810;5811;5812;5813;5814;5815;5816;5817;5818;5819 5814 10 ASEVFLQR ELYYVNRDTLFCYHKASEVFLQRLMALYVA TLFCYHKASEVFLQRLMALYVASHYKNSPN K A S Q R L 1 1 0 0 0 1 1 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 8 0 948.50288 Q05CW7;Q9H0A0;A0A087WV29 Q9H0A0 521 528 NAT10 N-acetyltransferase 10 no no 2 3.5267E-33 207.86 4 2 0.76486 1.0603 6.543 6 Median 0.81073 1.1214 6.6829 4 0 Median 0.62788 1.0083 0.51412 2 0 Median 424280000 238780000 185500000 334770000 184400000 150370000 89511000 54383000 35128000 995 1730;1443 1026 3841;3842;3843;3844;3845;3846 5820;5821;5822;5823;5824;5825;5826;5827 5822 8 ASEVQEFTAEFLEK ERFRAYQDYILADCKASEVQEFTAEFLEKV KASEVQEFTAEFLEKVLEPSGWRAVWHTNV K A S E K V 2 0 0 0 0 1 4 0 0 0 1 1 0 2 0 1 1 0 0 1 0 0 14 0 1626.7777 B2RDX0;A8K7Z9;A0A024R6R1;Q8NEM2 B2RDX0 95 108 SHCBP1 SHC SH2 domain-binding protein 1 yes no 2 0.00035615 63.408 1 0.44206 0.5603 NaN 1 Median 0.44206 0.5603 NaN 1 0 Median NaN NaN NaN 0 0 Median 6073800 3585700 2488100 6073800 3585700 2488100 0 0 0 996 163 1027 3847 5828 5828 1 ASFASASAEVGKK SEEEEEERKKKCPKKASFASASAEVGKKGK KKASFASASAEVGKKGKKKCQKQGPPCSDS K A S K K G 4 0 0 0 0 0 1 1 0 0 0 2 0 1 0 3 0 0 0 1 0 0 13 1 1251.6459 O43159;E9PPY3 O43159 79 91 RRP8 Ribosomal RNA-processing protein 8 yes no 2 0.039607 30.182 1 0.47974 0.71005 NaN 1 Median NaN NaN NaN 0 0 Median 0.47974 0.71005 NaN 1 0 Median 4509200 3132200 1377000 0 0 0 4509200 3132200 1377000 997 1181 1028 3848 5829 5829 1 ASFENNCEIGCFAK ______________________________ RASFENNCEIGCFAKLTNTYCLVAIGGSEN R A S A K L 2 0 2 0 2 0 2 1 0 1 0 1 0 2 0 1 0 0 0 0 0 0 14 0 1645.6865 P56537;B7ZBH1;F8WD20;B4DJH0;A0A0B4J1Y7;F8WDS6 P56537 5 18 EIF6 Eukaryotic translation initiation factor 6 yes no 2 1.347E-50 231.07 4 1 0.82593 1.0984 30.015 5 Plateau 0.83397 1.121 2.4095 4 0 Linear 0.37005 0.5587 NaN 1 0 Median 502880000 279690000 223190000 481010000 262830000 218180000 21875000 16861000 5013300 998 1382 1029 3849;3850;3851;3852;3853 5830;5831;5832;5833;5834;5835;5836;5837;5838 5831 9 ASFNHFDK RDAKGISQEQMQEFRASFNHFDKDHGGALG EQMQEFRASFNHFDKDHGGALGPEEFKACL R A S D K D 1 0 1 1 0 0 0 0 1 0 0 1 0 2 0 1 0 0 0 0 0 0 8 0 964.44028 A0A0S2Z3G9;O43707;Q96BG6;F5GXS2;H7C144;A0A0S2Z3X3;A0A0S2Z3C0 A0A0S2Z3G9 772 779 ACTN4 Alpha-actinin-4 yes no 2 0.0065678 107.29 2 0.99519 1.2601 4.671 2 Median 0.99519 1.2601 4.671 2 0 Median NaN NaN NaN 0 0 Median 10580000 5088500 5491800 10580000 5088500 5491800 0 0 0 999 451 1030 3854;3855 5839;5840 5839 2 ASGADSKGDDLSTAILK ______________________________ GADSKGDDLSTAILKQKNRPNRLIVDEAIN M A S L K Q 3 0 0 3 0 0 0 2 0 1 2 2 0 0 0 3 1 0 0 0 0 0 17 1 1647.8315 V9HW80;P55072 V9HW80 2 18 HEL-S-70;VCP Transitional endoplasmic reticulum ATPase yes no 2 2.2575E-13 144.88 2 0.61957 0.74522 NaN 1 Median 0.61957 0.74522 NaN 1 0 Median NaN NaN NaN 0 0 Median 6008400 4969500 1038900 6008400 4969500 1038900 0 0 0 1000 1376 1031 3856;3857 5841;5842;5843 5841 3 ASGDLYEVER ______________________________ ______________________________ M A S E R I 1 1 0 1 0 0 2 1 0 0 1 0 0 0 0 1 0 0 1 1 0 0 10 0 1137.5302 A0A0B4J291;Q8N8U2 A0A0B4J291 2 11 CDYL2 Chromodomain Y-like protein 2 yes no 1 0.0037666 87.308 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 477690 477690 0 477690 477690 0 0 0 0 1001 417 1032 3858 5844 5844 1 ASGGLPQFGDEYDFYR SFVKFALGSVVAVTKASGGLPQFGDEYDFY SGGLPQFGDEYDFYRSFPGFQAFCETQGDR K A S Y R S 1 1 0 2 0 1 1 3 0 0 1 0 0 2 1 1 0 0 2 0 0 0 16 0 1820.8006 Q01780;B4DKG8;B4DFE4;Q59G73;K7EJ37 Q01780 49 64 EXOSC10 Exosome component 10 yes no 2 3.0762E-08 117.03 2 1 0.69274 0.95901 31.034 3 Median 0.71351 0.98951 4.4286 2 0 Median 0.39545 0.57966 NaN 1 0 Median 29842000 17783000 12058000 16437000 8306100 8130600 13405000 9477100 3927700 1002 1433 1033 3859;3860;3861 5845;5846;5847;5848;5849 5846 5 ASGGSLQGHDAVLR LLMYLMDLTHLILDKASGGSLQGHDAVLRL KASGGSLQGHDAVLRLVEIRTVLEKLRPLD K A S L R L 2 1 0 1 0 1 0 3 1 0 2 0 0 0 0 2 0 0 0 1 0 0 14 0 1366.6953 Q8NEJ9;H0YJ17;G3V4G1 Q8NEJ9 75 88 NGDN Neuroguidin yes no 2;3 8.5499E-28 160.18 5 2 0.86053 1.1665 37.095 6 Median 0.88018 1.1971 20.951 5 0 Median 0.351 0.54554 NaN 1 0 Median 141990000 85513000 56481000 104670000 53519000 51155000 37320000 31994000 5325700 1003 1654 1034 3862;3863;3864;3865;3866;3867;3868 5850;5851;5852;5853;5854;5855;5856;5857;5858;5859;5860;5861 5851 12 ASGKFELLDR LGFTGGIVQGLDLYRASGKFELLDRILPKL LDLYRASGKFELLDRILPKLRATNHKVLLF R A S D R I 1 1 0 1 0 0 1 1 0 0 2 1 0 1 0 1 0 0 0 0 0 0 10 1 1134.6033 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;Q59FZ6;B4E0F1;B4DSI8;B3KNW7;P51531;A0A0U1RQZ9;F6VDE0;B4DK35;B4DSC8 A7E2E1 1078 1087 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 3 0.022053 60.167 2 0.67367 0.89442 13.133 2 Median 0.67367 0.89442 13.133 2 0 Median NaN NaN NaN 0 0 Median 23481000 14317000 9164600 23481000 14317000 9164600 0 0 0 1004 403;1362 1035 3869;3870 5862;5863 5862 2 ASGLACSQEAEYHSQSR EAVQSEGVMIQEWYKASGLACSQEAEYHSQ GLACSQEAEYHSQSRAAVTIQKAFCRMVTR K A S S R A 3 1 0 0 1 2 2 1 1 0 1 0 0 0 0 4 0 0 1 0 0 0 17 0 1879.8119 Q8IZT6;Q4G1H2;Q4G1H0;A0A087WV76 Q8IZT6 2800 2816 ASPM Abnormal spindle-like microcephaly-associated protein yes no 3 0.031221 57.973 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 652730 0 652730 652730 0 652730 0 0 0 1005 1631 1036 3871 5864 5864 1 ASGLVPNVVVLVATVR GADIGMEKFFNIKCRASGLVPNVVVLVATV SGLVPNVVVLVATVRALKMHGGGPSVTAGV R A S V R A 2 1 1 0 0 0 0 1 0 0 2 0 0 0 1 1 1 0 0 6 0 0 16 0 1592.9614 A0A087WVM4;B7ZM99;Q6UB35;B2RD24 A0A087WVM4 665 680 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 2 5.0839E-06 89.629 4 0.47971 0.67034 24.996 2 Median 0.47971 0.67034 24.996 2 0 Median NaN NaN NaN 0 0 Median 10109000 8003300 2105300 10109000 8003300 2105300 0 0 0 1006 348 1037 3872;3873;3874;3875 5865;5866;5867;5868;5869 5867 5 ASGNYATVISHNPETK CCLEEKPGDRGKLARASGNYATVISHNPET SGNYATVISHNPETKKTRVKLPSGSKKVIS R A S T K K 2 0 2 0 0 0 1 1 1 1 0 1 0 0 1 2 2 0 1 1 0 0 16 0 1687.8166 P62917;B4DVG7;E9PKZ0;G3V1A1 P62917 129 144 RPL8 60S ribosomal protein L8 yes no 2;3 2.4722E-98 295.29 7 2 0.75085 0.98611 14.685 8 Median 0.76558 1.0124 7.167 6 0 Median 0.47785 0.75631 0.38562 2 0 Median 1547500000 882600000 664870000 1332900000 741750000 591170000 214550000 140850000 73696000 1007 1417 1038 3876;3877;3878;3879;3880;3881;3882;3883;3884 5870;5871;5872;5873;5874;5875;5876;5877;5878;5879;5880;5881;5882;5883;5884;5885;5886;5887;5888;5889 5875 20 ASGNYATVISHNPETKK CCLEEKPGDRGKLARASGNYATVISHNPET GNYATVISHNPETKKTRVKLPSGSKKVISS R A S K K T 2 0 2 0 0 0 1 1 1 1 0 2 0 0 1 2 2 0 1 1 0 0 17 1 1815.9115 P62917;B4DVG7;E9PKZ0;G3V1A1 P62917 129 145 RPL8 60S ribosomal protein L8 yes no 2;3;4 1.5689E-45 233.52 10 3 0.78111 0.95088 16.011 11 Median 0.7904 0.95805 6.6362 8 0 Median 0.45629 0.72178 5.9512 3 0 Median 1120900000 644680000 476270000 1036900000 588160000 448750000 84038000 56520000 27518000 1008 1417 1039 3885;3886;3887;3888;3889;3890;3891;3892;3893;3894;3895;3896;3897 5890;5891;5892;5893;5894;5895;5896;5897;5898;5899;5900;5901;5902;5903;5904;5905;5906;5907;5908;5909;5910;5911;5912;5913 5904 24 ASGPGLNTTGVPASLPVEFTIDAK FKVKVLPTHDASKVKASGPGLNTTGVPASL GVPASLPVEFTIDAKDAGEGLLAVQITDPE K A S A K D 3 0 1 1 0 0 1 3 0 1 2 1 0 1 3 2 3 0 0 2 0 0 24 0 2341.2165 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1550 1573 FLNA;FLJ00119 Filamin-A yes no 2 5.2925E-37 147.09 4 1.0442 1.3342 14.348 4 Median 1.0442 1.3342 14.348 4 0 Median NaN NaN NaN 0 0 Median 39934000 19771000 20163000 39934000 19771000 20163000 0 0 0 1009 1287 1040 3898;3899;3900;3901 5914;5915;5916;5917;5918;5919;5920;5921;5922 5920 9 ASGPPVSELITK VKKKARKSAGAAKRKASGPPVSELITKAVA KRKASGPPVSELITKAVAASKERSGVSLAA K A S T K A 1 0 0 0 0 0 1 1 0 1 1 1 0 0 2 2 1 0 0 1 0 0 12 0 1197.6605 B2R984;A3R0T8;P10412;Q4VB24;A3R0T7;P16402;P16403 P16403 35 46 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 2 1.1339E-44 199.33 15 5 0.84105 1.1103 7.803 16 Median 0.86051 1.0942 6.9201 12 0 Median 0.74268 1.1711 8.8139 4 0 Median 20789000000 13850000000 6938800000 15871000000 10992000000 4879000000 4918300000 2858500000 2059800000 1010 542;1274 1041 3902;3903;3904;3905;3906;3907;3908;3909;3910;3911;3912;3913;3914;3915;3916;3917;3918;3919;3920;3921 5923;5924;5925;5926;5927;5928;5929;5930;5931;5932;5933;5934;5935;5936;5937;5938;5939;5940;5941;5942;5943;5944;5945;5946;5947;5948;5949;5950;5951;5952;5953;5954;5955;5956;5957;5958;5959;5960;5961;5962;5963;5964;5965;5966;5967;5968 5960 46 ASGPPVSELITKAVAASK VKKKARKSAGAAKRKASGPPVSELITKAVA PPVSELITKAVAASKERSGVSLAALKKALA K A S S K E 4 0 0 0 0 0 1 1 0 1 1 2 0 0 2 3 1 0 0 2 0 0 18 1 1724.9672 B2R984;A3R0T8;P10412;P16402;P16403 P16403 35 52 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 3 0.037024 16.487 1 0.7093 1.1294 NaN 1 Median NaN NaN NaN 0 0 Median 0.7093 1.1294 NaN 1 0 Median 10753000 6175600 4577500 0 0 0 10753000 6175600 4577500 1011 542;1274 1042 3922 5969 5969 1 ASGSGGGSAALGPSGFGPSGGSGTK GPRAPRPPQPKKSKKASGSGGGSAALGPSG LGPSGFGPSGGSGTKLPKKATKTAPPALPT K A S T K L 3 0 0 0 0 0 0 10 0 0 1 1 0 1 2 6 1 0 0 0 0 0 25 0 2006.9294 A0A024RCR5;A0A0G2JK44;P25440;H0Y6K2;A0A140T9E9;X5CF57;A0A0G2JHN8;A0A140T9I1;A0A140T9V2 A0A024RCR5 590 614 BRD2 Bromodomain-containing protein 2 yes no 2 9.7207E-48 166.67 4 0.81888 1.0146 27.214 4 Median 0.81888 1.0146 27.214 4 0 Median NaN NaN NaN 0 0 Median 16175000 8558100 7616800 16175000 8558100 7616800 0 0 0 1012 300 1043 3923;3924;3925;3926 5970;5971;5972;5973;5974;5975;5976 5972 7 ASHLLETLLCK VVNKLGDPQNRIATKASHLLETLLCKHPNM IATKASHLLETLLCKHPNMKGVVSGEVERL K A S C K H 1 0 0 0 1 0 1 0 1 0 4 1 0 0 0 1 1 0 0 0 0 0 11 0 1283.6908 B2R5U7;Q03701 B2R5U7 402 412 CEBPZ CCAAT/enhancer-binding protein zeta no no 3 0.00063866 103.34 1 0.91075 1.1526 NaN 1 Median 0.91075 1.1526 NaN 1 0 Median NaN NaN NaN 0 0 Median 3979400 1668500 2310900 3979400 1668500 2310900 0 0 0 1013 693;1441 1044 3927 5977 5977 1 ASHNNTQIQVVSASNEPLAFASCGTEGFR WAGKKFEEIPIAHIKASHNNTQIQVVSASN NEPLAFASCGTEGFRNAKKGTGIAAQTAGI K A S F R N 4 1 3 0 1 2 2 2 1 1 1 0 0 2 1 4 2 0 0 2 0 0 29 0 3091.4418 Q53GJ8;Q53FX9;P82912 Q53GJ8 90 118 MRPS11 28S ribosomal protein S11, mitochondrial yes no 3 9.1405E-08 62.295 3 0.7619 1.0602 43.593 3 Median 0.7619 1.0602 43.593 3 0 Median NaN NaN NaN 0 0 Median 10308000 6277800 4030500 10308000 6277800 4030500 0 0 0 1014 1430 1045 3928;3929;3930 5978;5979;5980;5981;5982;5983;5984 5983 7 ASINMLR RLRQIFNGTFVKLNKASINMLRIVEPYIAW GTFVKLNKASINMLRIVEPYIAWGYPNLKS K A S L R I 1 1 1 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 7 0 803.43236 A0A024R814;P18124;A8MUD9;C9JIJ5 A0A024R814 139 145 RPL7 60S ribosomal protein L7 yes no 2 6.7641E-08 124.37 3 1 0.58547 0.84015 23.541 2 Median 0.74279 0.99232 NaN 1 0 Median 0.46147 0.71132 NaN 1 0 Median 28109000 17979000 10130000 8805500 5572500 3233000 19303000 12406000 6897300 1015 189 1046;1047 3931;3932;3933;3934 5985;5986;5987;5988;5989 5987 85 5 ASIPATSAVQNVLINPSLIGSK RFTVQMPTSQSPAVKASIPATSAVQNVLIN AVQNVLINPSLIGSKNILITTNMMSSQNTA K A S S K N 3 0 2 0 0 1 0 1 0 3 2 1 0 0 2 4 1 0 0 2 0 0 22 0 2179.2212 Q16594 Q16594 201 222 TAF9 Transcription initiation factor TFIID subunit 9 yes yes 2 0.0028303 56.339 1 0.31002 0.38685 NaN 1 Median 0.31002 0.38685 NaN 1 0 Median NaN NaN NaN 0 0 Median 1137600 700820 436740 1137600 700820 436740 0 0 0 1016 1522 1048 3935 5990 5990 1 ASITALEAK VKLQEMEGTVKSKYKASITALEAKIAQLEE VKSKYKASITALEAKIAQLEEQLDNETKER K A S A K I 3 0 0 0 0 0 1 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 9 0 902.5073 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1807 1815 MYH9;FLJ00279 Myosin-9 no no 1;2 0.00042162 121.05 4 1.0181 1.3039 8.2588 4 Median 1.0181 1.3039 8.2588 4 0 Median NaN NaN NaN 0 0 Median 208560000 106980000 101570000 208560000 106980000 101570000 0 0 0 1017 61;490 1049 3936;3937;3938;3939 5991;5992;5993;5994;5995;5996 5994 6 ASITPGTILIILTGR SHGKKPFSQHVRKLRASITPGTILIILTGR ASITPGTILIILTGRHRGKRVVFLKQLASG R A S G R H 1 1 0 0 0 0 0 2 0 4 2 0 0 0 1 1 3 0 0 0 0 0 15 0 1524.9239 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3;F8VZ45;U3KQR5;F8VR69 Q8TBK5 142 156 RPL6 60S ribosomal protein L6 yes no 2 1.5592E-62 216.84 6 0.78048 1.082 10.185 5 Median 0.78048 1.082 10.185 5 0 Median NaN NaN NaN 0 0 Median 2024700000 1203200000 821580000 2024700000 1203200000 821580000 0 0 0 1018 277 1050 3940;3941;3942;3943;3944;3945 5997;5998;5999;6000;6001;6002;6003;6004;6005;6006;6007 6003 11 ASLCISTK MIEKLGGKLTGTANKASLCISTKKEVEKMN LTGTANKASLCISTKKEVEKMNKKMEEVKE K A S T K K 1 0 0 0 1 0 0 0 0 1 1 1 0 0 0 2 1 0 0 0 0 0 8 0 878.45315 A0A024R3T8;P09874;B4E0E1 A0A024R3T8 426 433 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.012741 98.523 2 1.1376 1.4522 5.6413 2 Median 1.1376 1.4522 5.6413 2 0 Median NaN NaN NaN 0 0 Median 104910000 48300000 56607000 104910000 48300000 56607000 0 0 0 1019 107 1051 3946;3947 6008;6009;6010;6011 6008 4 ASLCISTKK MIEKLGGKLTGTANKASLCISTKKEVEKMN TGTANKASLCISTKKEVEKMNKKMEEVKEA K A S K K E 1 0 0 0 1 0 0 0 0 1 1 2 0 0 0 2 1 0 0 0 0 0 9 1 1006.5481 A0A024R3T8;P09874;B4E0E1 A0A024R3T8 426 434 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.018321 85.161 1 1.2003 1.4817 NaN 1 Median 1.2003 1.4817 NaN 1 0 Median NaN NaN NaN 0 0 Median 7659800 3210500 4449300 7659800 3210500 4449300 0 0 0 1020 107 1052 3948 6012 6012 1 ASLEAAIADAEQR ISRLQAEIEGLKGQRASLEAAIADAEQRGE QRASLEAAIADAEQRGELAIKDANAKLSEL R A S Q R G 5 1 0 1 0 1 2 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 13 0 1343.6681 CON__P05787;P05787;Q969I0;Q7L4M3;CON__H-INV:HIT000292931 CON__P05787 329 341 KRT8 Keratin, type II cytoskeletal 8 yes no 2 1.5666E-16 171.92 4 2 0.21947 0.30286 7.3751 3 Plateau 0.21947 0.30286 7.3751 3 0 Plateau NaN NaN NaN 0 0 Median 461400000 387040000 74362000 405020000 330660000 74362000 56384000 56384000 0 + 1021 955 1053 3949;3950;3951;3952;3953;3954 6013;6014;6015;6016;6017;6018;6019;6020 6013 8 ASLEAAIADAEQRGELAIK ISRLQAEIEGLKGQRASLEAAIADAEQRGE AAIADAEQRGELAIKDANAKLSELEAALQR R A S I K D 6 1 0 1 0 1 3 1 0 2 2 1 0 0 0 1 0 0 0 0 0 0 19 1 1955.0324 CON__P05787;P05787;Q969I0;Q7L4M3;CON__H-INV:HIT000292931 CON__P05787 329 347 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 2.4532E-110 266.2 9 3 0.23263 0.30465 115.91 11 Median 0.22195 0.29325 9.7622 8 0 Median 1.9847 3.4569 4.8888 3 0 Median 1268800000 958540000 310270000 1070700000 891760000 178950000 198100000 66785000 131320000 + 1022 955 1054 3955;3956;3957;3958;3959;3960;3961;3962;3963;3964;3965;3966 6021;6022;6023;6024;6025;6026;6027;6028;6029;6030;6031;6032;6033;6034;6035;6036;6037;6038 6028 18 ASLEDAPVDDLTR AERSCTPSPDQISHRASLEDAPVDDLTRKF HRASLEDAPVDDLTRKFTYLGSQDRARPPS R A S T R K 2 1 0 3 0 0 1 0 0 0 2 0 0 0 1 1 1 0 0 1 0 0 13 0 1400.6783 Q7Z2W4;A8K9U6;C9J6P4 Q7Z2W4 283 295 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 0.0045464 65.695 2 1 0.91996 0.71112 68.787 3 Plateau 0.50843 0.70934 0.35444 2 0 Median 1.658 2.335 NaN 1 0 Median 13091000 6010900 7079700 6358700 3910100 2448600 6731900 2100800 4631100 1023 1613 1055 3967;3968;3969 6039;6040;6041 6041 3 ASLEGNLAETENR MQALEIELQSQLSMKASLEGNLAETENRYC MKASLEGNLAETENRYCVQLSQIQGLIGSV K A S N R Y 2 1 2 0 0 0 3 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 13 0 1402.6688 CON__Q04695;Q04695;F5GWP8;Q14666 CON__Q04695 322 334 KRT17 Keratin, type I cytoskeletal 17 yes no 2 8.7645E-05 97.957 4 0.69876 0.98324 26.398 4 Median 0.69876 0.98324 26.398 4 0 Median NaN NaN NaN 0 0 Median 22344000 13261000 9083000 22344000 13261000 9083000 0 0 0 + 1024 965 1056 3970;3971;3972;3973 6042;6043;6044;6045 6045 4 ASLENSLEETK MQNLEIELQSQLSMKASLENSLEETKGRYC LSMKASLENSLEETKGRYCMQLAQIQEMIG K A S T K G 1 0 1 0 0 0 3 0 0 0 2 1 0 0 0 2 1 0 0 0 0 0 11 0 1219.5932 CON__P02533;P02533;A0A024R1X6;Q13092;CON__P08779;P08779;Q16195;CON__Q9Z2K1;CON__Q3ZAW8;K7ENW6 CON__P02533 353 363 KRT14;K14;KRT16;keratin Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16 no no 2 9.6453E-19 173.37 2 2 0.39434 0.49566 NaN 1 Median 0.39434 0.49566 NaN 1 0 Median NaN NaN NaN 0 0 Median 136090000 117920000 18174000 52788000 34614000 18174000 83306000 83306000 0 + 1025 949;958 1057 3974;3975;3976;3977 6046;6047;6048;6049 6047 4 ASLENSLR VQSLEIDLDSMRNLKASLENSLREVEARYA DSMRNLKASLENSLREVEARYALQMEQLNG K A S L R E 1 1 1 0 0 0 1 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 8 0 888.46649 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__H-INV:HIT000015463 F8VZY9 318 325 KRT18 Keratin, type I cytoskeletal 18 yes no 2 2.2372E-05 118.74 5 1 0.21119 0.28858 8.7853 3 Median 0.21119 0.28858 8.7853 3 0 Median NaN NaN NaN 0 0 Median 132440000 109310000 23130000 122640000 99505000 23130000 9802100 9802100 0 1026 252 1058 3978;3979;3980;3981;3982;3983 6050;6051;6052;6053;6054;6055 6053 6 ASLGPLQSK KELEGLPPGAKVTIRASLGPLQSKLPTAPF AKVTIRASLGPLQSKLPTAPFGCAPGTSFL R A S S K L 1 0 0 0 0 1 0 1 0 0 2 1 0 0 1 2 0 0 0 0 0 0 9 0 899.50763 Q8ND82;Q9UJJ2 Q8ND82 514 522 ZNF280C Zinc finger protein 280C yes no 2 0.02687 47.561 1 0.75233 1.1135 NaN 1 Median NaN NaN NaN 0 0 Median 0.75233 1.1135 NaN 1 0 Median 10094000 5708300 4385800 0 0 0 10094000 5708300 4385800 1027 1652 1059 3984 6056 6056 1 ASLIEEDEPAEK LEAFIQNLNLAKYTKASLIEEDEPAEKENS YTKASLIEEDEPAEKENSSRKEVKIPKINN K A S E K E 2 0 0 1 0 0 4 0 0 1 1 1 0 0 1 1 0 0 0 0 0 0 12 0 1329.63 B2R5U7 B2R5U7 99 110 yes yes 2 1.6328E-12 164.97 4 2 0.65973 0.92749 14.205 6 Median 0.78711 0.97348 18.324 4 0 Median 0.6011 0.92749 1.1042 2 0 Median 129290000 74539000 54752000 77464000 42072000 35392000 51827000 32467000 19360000 1028 693 1060 3985;3986;3987;3988;3989;3990 6057;6058;6059;6060;6061;6062;6063;6064;6065;6066;6067 6059 11 ASLLDDYQLPEILR RVQPGHCYHLYNGLRASLLDDYQLPEILRT RASLLDDYQLPEILRTPLEELCLQIKILRL R A S L R T 1 1 0 2 0 1 1 0 0 1 4 0 0 0 1 1 0 0 1 0 0 0 14 0 1644.8723 E7EWK3;B7Z8P5;Q9H2U1;H7C5F5 E7EWK3 534 547 DHX36 ATP-dependent RNA helicase DHX36 yes no 2 0.00010394 69.451 2 0.47564 0.6415 NaN 1 Median 0.47564 0.6415 NaN 1 0 Median NaN NaN NaN 0 0 Median 10035000 8266100 1768600 10035000 8266100 1768600 0 0 0 1029 919 1061 3991;3992 6068;6069 6068 2 ASLLQLTR EAGLQEAGEEDTRLKASLLQLTRELEELKE EEDTRLKASLLQLTRELEELKEIEADLERQ K A S T R E 1 1 0 0 0 1 0 0 0 0 3 0 0 0 0 1 1 0 0 0 0 0 8 0 900.53927 B4E086;K7EJH0;K7EMX1;K7EJV2;K7ESQ2 B4E086 42 49 SPC24 yes no 2 0.00099089 117.4 3 3 0.51089 0.67648 1.5263 2 Median 0.4956 0.68382 NaN 1 0 Median 0.52665 0.66922 NaN 1 0 Median 13261000 9421000 3839800 4713800 3143200 1570600 8547100 6277800 2269200 1030 884 1062 3993;3994;3995;3996;3997;3998 6070;6071;6072;6073;6074;6075;6076;6077 6073 8 ASLLSFQDEEEENEEVFK LKPRKRPRENKEVPRASLLSFQDEEEENEE LSFQDEEEENEEVFKVKKSSYSKKIVKLLK R A S F K V 1 0 1 1 0 1 6 0 0 0 2 1 0 2 0 2 0 0 0 1 0 0 18 0 2141.9641 Q9Y5B6;Q5XGA1;Q8N6E6 Q9Y5B6 104 121 PAXBP1;C21orf66 PAX3- and PAX7-binding protein 1 yes no 2 0.0088374 79.089 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 557660 557660 0 557660 557660 0 0 0 0 1031 1828 1063 3999 6078 6078 1 ASLNGADIYSGCCTLK AMVEFDSVQSAQRAKASLNGADIYSGCCTL SLNGADIYSGCCTLKIEYAKPTRLNVFKND K A S L K I 2 0 1 1 2 0 0 2 0 1 2 1 0 0 0 2 1 0 1 0 0 0 16 0 1728.7811 B2R959;Q6NTA2;P14866;M0QXS5;M0R1W6;B4DVF8;B4DPK8 B2R959 218 233 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 2 6.5841E-08 109.16 3 0.54394 0.69333 NaN 1 Median 0.54394 0.69333 NaN 1 0 Median NaN NaN NaN 0 0 Median 13522000 10529000 2993400 13522000 10529000 2993400 0 0 0 1032 719 1064 4000;4001;4002 6079;6080;6081 6080 3 ASLNPSDTPPSVVNEDFLHDLK PKYPWSKCGDKTTSKASLNPSDTPPSVVNE TPPSVVNEDFLHDLKETNISYSQEADDRVF K A S L K E 1 0 2 3 0 0 1 0 1 0 3 1 0 1 3 3 1 0 0 2 0 0 22 0 2394.1703 B7ZAC5;Q53SG6;A0A1B0GWA2;B7Z3Q4;O00116 B7ZAC5 18 39 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes no 3 0.041336 47.603 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1451400 1451400 0 1451400 1451400 0 0 0 0 1033 522 1065 4003 6082 6082 1 ASLSLIEK KIEALQNHENESVYKASLSLIEKYFSVEEE ENESVYKASLSLIEKYFSVEEEEDQNVVPE K A S E K Y 1 0 0 0 0 0 1 0 0 1 2 1 0 0 0 2 0 0 0 0 0 0 8 0 859.50148 Q7Z726;A8K7D9;P52292 Q7Z726 487 494 KPNA2 Importin subunit alpha;Importin subunit alpha-1 yes no 2 0.014798 89.752 2 1 0.45334 0.58041 4.4697 3 Median 0.46232 0.57305 1.8055 2 0 Median 0.4104 0.61718 NaN 1 0 Median 59589000 41951000 17639000 39240000 27559000 11680000 20349000 14391000 5958100 1034 633 1066 4004;4005;4006 6083;6084;6085 6084 3 ASLVSEEEEDEEEDK PEVMVVESDLSDDGKASLVSEEEEDEEEDK ASLVSEEEEDEEEDKATPRRSRSRRSSIGL K A S D K A 1 0 0 2 0 0 7 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 15 0 1736.7112 A8K8X5;A0A024RA51;Q96GN5;C9IZR6;C9JFL7;C9J8L0 A8K8X5 113 127 CDCA7L Cell division cycle-associated 7-like protein yes no 2 0.00078383 52.071 1 0.38649 0.55409 NaN 1 Median NaN NaN NaN 0 0 Median 0.38649 0.55409 NaN 1 0 Median 4855100 3121200 1734000 0 0 0 4855100 3121200 1734000 1035 236 1067 4007 6086 6086 1 ASMQPIQIAEGTGITTR DEEMKTGDPQETLRRASMQPIQIAEGTGIT MQPIQIAEGTGITTRQQRKRVSLEPHQGPG R A S T R Q 2 1 0 0 0 2 1 2 0 3 0 0 1 0 1 1 3 0 0 0 0 0 17 0 1772.9091 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q9UNL7;Q4LE64;Q14980 Q4LE64 1954 1970 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 5.051E-19 118.13 2 0.31251 0.50118 0.70007 2 Median NaN NaN NaN 0 0 Median 0.31251 0.50118 0.70007 2 0 Median 89449000 68314000 21135000 0 0 0 89449000 68314000 21135000 1036 148;1499 1068 4008;4009 6087;6088 6087 73 2 ASMQQQQQLASAR ______________________________ IRASMQQQQQLASARNRRLAQQMENRPSVQ R A S A R N 3 1 0 0 0 5 0 0 0 0 1 0 1 0 0 2 0 0 0 0 0 0 13 0 1445.7045 X6R700;Q9Y3Y2;A0A087X1B7 X6R700 14 26 CHTOP Chromatin target of PRMT1 protein yes no 2 0.01367 39.266 1 0.59278 0.79056 NaN 1 Median 0.59278 0.79056 NaN 1 0 Median NaN NaN NaN 0 0 Median 2054400 1044900 1009400 2054400 1044900 1009400 0 0 0 1037 1822 1069 4010 6089 6089 1 ASMSEFLESEDGEVEQQR TPITHILVCRPKRTKASMSEFLESEDGEVE SEFLESEDGEVEQQRTYSSGHNRLYFHSDT K A S Q R T 1 1 0 1 0 2 5 1 0 0 1 0 1 1 0 3 0 0 0 1 0 0 18 0 2069.8848 J3QQW9;Q15022;A8K1U9 J3QQW9 515 532 SUZ12 Polycomb protein SUZ12 yes no 2 0.00052064 42.317 1 0.76375 1.1455 NaN 1 Median NaN NaN NaN 0 0 Median 0.76375 1.1455 NaN 1 0 Median 15647000 9040600 6606700 0 0 0 15647000 9040600 6606700 1038 1143 1070 4011 6090 6090 409 1 ASNLENSTYDLYTIPK MSYNPAENAVLLCTRASNLENSTYDLYTIP SNLENSTYDLYTIPKDADSQNPDAPEGKRS R A S P K D 1 0 2 1 0 0 1 0 0 1 2 1 0 0 1 2 2 0 2 0 0 0 16 0 1827.8891 P53621 P53621 383 398 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 4.4316E-05 115.8 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4992700 0 4992700 4992700 0 4992700 0 0 0 1039 1371 1071 4012;4013 6091;6092 6092 2 ASNLLLNYK LEYIHEHEYVHGDIKASNLLLNYKNPDQVY VHGDIKASNLLLNYKNPDQVYLVDYGLAYR K A S Y K N 1 0 2 0 0 0 0 0 0 0 3 1 0 0 0 1 0 0 1 0 0 0 9 0 1034.576 A8K245;Q99986;H0YJ50 A8K245 180 188 VRK1 Serine/threonine-protein kinase VRK1 yes no 2 0.0011417 103.83 4 2 1.0561 1.336 31.355 6 Median 1.075 1.3675 11.057 4 0 Median 0.52833 0.79723 0.13744 2 0 Median 102350000 55293000 47055000 69050000 33528000 35521000 33298000 21764000 11534000 1040 582 1072 4014;4015;4016;4017;4018;4019 6093;6094;6095;6096;6097;6098;6099;6100;6101 6097 9 ASPITNDGEDEFVPSDGLDKDEYTFSPGK DDDDDNNDLEELKVKASPITNDGEDEFVPS SDGLDKDEYTFSPGKSKASPEKSLHDKKSQ K A S G K S 1 0 1 5 0 0 3 3 0 1 1 2 0 2 3 3 2 0 1 1 0 0 29 1 3129.3938 Q71UH4;Q02880;Q59H80;B4DLV2;Q8WTY5;B7ZB27 Q71UH4 1371 1399 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 3 6.2272E-16 103.53 2 0.69587 0.86007 2.2184 2 Median 0.69587 0.86007 2.2184 2 0 Median NaN NaN NaN 0 0 Median 17767000 9634800 8132400 17767000 9634800 8132400 0 0 0 1041 1437 1073 4020;4021 6102;6103;6104;6105 6102 4 ASPLFSQHTAADK AKEELIFHCGFRRFRASPLFSQHTAADKHK FRASPLFSQHTAADKHKLQRFLTADMALVA R A S D K H 3 0 0 1 0 1 0 0 1 0 1 1 0 1 1 2 1 0 0 0 0 0 13 0 1371.6783 Q2NL82 Q2NL82 625 637 TSR1 Pre-rRNA-processing protein TSR1 homolog yes yes 2 7.1394E-05 122.18 4 0.69959 0.89336 27.527 2 Median 0.69959 0.89336 27.527 2 0 Median NaN NaN NaN 0 0 Median 19005000 10991000 8013400 19005000 10991000 8013400 0 0 0 1042 1529 1074 4022;4023;4024;4025 6106;6107;6108;6109;6110;6111 6108 6 ASPPSLEQPYLTHR AGMGDVVNIWAGQGKASPPSLEQPYLTHRL KASPPSLEQPYLTHRLSGPVHGLQFCPFED K A S H R L 1 1 0 0 0 1 1 0 1 0 2 0 0 0 3 2 1 0 1 0 0 0 14 0 1594.8104 B0UZZ8;B4DNI0;O15213;B4DP15;A8K9A1;A8K806 B0UZZ8 432 445 C6orf11;WDR46 WD repeat-containing protein 46 yes no 3 0.00045025 81.904 4 2 0.91973 1.2563 7.8225 6 Median 0.94835 1.299 6.1636 4 0 Median 0.75423 1.1628 0.42452 2 0 Median 235580000 121110000 114470000 192850000 96975000 95874000 42732000 24133000 18599000 1043 668 1075 4026;4027;4028;4029;4030;4031 6112;6113;6114;6115;6116;6117;6118;6119;6120;6121;6122 6119 11 ASPSLERPEK ______________________________ ______________________________ M A S E K G 1 1 0 0 0 0 2 0 0 0 1 1 0 0 2 2 0 0 0 0 0 0 10 1 1112.5826 Q13601;B4DMS5 Q13601 2 11 KRR1 KRR1 small subunit processome component homolog yes no 2 0.010933 60.064 1 1.0666 1.4057 NaN 1 Median 1.0666 1.4057 NaN 1 0 Median NaN NaN NaN 0 0 Median 17958000 8018000 9939700 17958000 8018000 9939700 0 0 0 1044 1473 1076 4032 6123 6123 1 ASPSPTDPVVPAVPIGPPPAGFR GHVMVNGPTTPIPVKASPSPTDPVVPAVPI VVPAVPIGPPPAGFRDILLREGPEGFARAV K A S F R D 3 1 0 1 0 0 0 2 0 1 0 0 0 1 8 2 1 0 0 3 0 0 23 0 2225.1845 A0A024R5C5;P11498 A0A024R5C5 520 542 PC Pyruvate carboxylase;Pyruvate carboxylase, mitochondrial yes no 2 3.7003E-08 86.944 4 0.27963 0.38122 2.5421 2 Median 0.27963 0.38122 2.5421 2 0 Median NaN NaN NaN 0 0 Median 14418000 12154000 2265000 14418000 12154000 2265000 0 0 0 1045 139 1077 4033;4034;4035;4036 6124;6125;6126;6127;6128;6129 6128 6 ASQDPFPAAIILK GGEKSLNDLIEERYKASQDPFPAAIILKVA YKASQDPFPAAIILKVALNMARGLKYLHQE K A S L K V 3 0 0 1 0 1 0 0 0 2 1 1 0 1 2 1 0 0 0 0 0 0 13 0 1369.7606 V9HWH0;Q96KB5;E5RFX4 V9HWH0 133 145 HEL164;PBK Lymphokine-activated killer T-cell-originated protein kinase yes no 2 0.014443 70.412 2 0.28206 0.3549 9.8592 2 Median 0.28206 0.3549 9.8592 2 0 Median NaN NaN NaN 0 0 Median 26362000 19189000 7173200 26362000 19189000 7173200 0 0 0 1046 1691 1078 4037;4038 6130;6131;6132;6133 6130 4 ASQGSTLVHPFR INFLLGILYIATPNKASQGSTLVHPFRALG PNKASQGSTLVHPFRALGKNSELLVVSARE K A S F R A 1 1 0 0 0 1 0 1 1 0 1 0 0 1 1 2 1 0 0 1 0 0 12 0 1298.6731 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 628 639 NOP14 Nucleolar protein 14 yes no 2 0.0052197 62.466 1 2 0.75039 1.3743 17.667 3 Plateau 1.0068 1.3911 NaN 1 0 Median 0.71836 1.0244 0.14026 2 0 Median 24143000 13469000 10674000 11712000 5805800 5905800 12431000 7663100 4767900 1047 652 1079 4039;4040;4041 6134;6135;6136;6137 6137 4 ASQPDLVDTPTSSK KESMTNEKTTKVSYRASQPDLVDTPTSSKP RASQPDLVDTPTSSKPQPKRSLRKADTEEE R A S S K P 1 0 0 2 0 1 0 0 0 0 1 1 0 0 2 3 2 0 0 1 0 0 14 0 1444.7046 P46013 P46013 1739 1752 MKI67 Antigen KI-67 yes yes 2 0.0026994 45.764 2 2 0.93696 1.3026 18.765 4 Median 0.86743 1.1014 3.2073 2 0 Median 1.0105 1.5215 1.4434 2 0 Median 40809000 19742000 21067000 14895000 7502900 7392300 25914000 12239000 13675000 1048 1342 1080 4042;4043;4044;4045 6138;6139;6140;6141;6142;6143 6139 6 ASQPDLVDTPTSSKPQPK KESMTNEKTTKVSYRASQPDLVDTPTSSKP PDLVDTPTSSKPQPKRSLRKADTEEEFLAF R A S P K R 1 0 0 2 0 2 0 0 0 0 1 2 0 0 4 3 2 0 0 1 0 0 18 1 1894.9636 P46013 P46013 1739 1756 MKI67 Antigen KI-67 yes yes 2;3 3.4383E-39 183.28 8 4 0.95459 1.1979 15.83 12 Median 0.94169 1.1427 5.7498 8 0 Median 0.95978 1.5543 2.5396 4 0 Median 1968800000 1006700000 962190000 1201500000 627470000 574020000 767360000 379180000 388170000 1049 1342 1081 4046;4047;4048;4049;4050;4051;4052;4053;4054;4055;4056;4057 6144;6145;6146;6147;6148;6149;6150;6151;6152;6153;6154;6155;6156;6157;6158;6159;6160;6161;6162;6163;6164;6165;6166;6167 6150 24 ASQTLSFQEIALLK GFSSSTTSTSWEGNRASQTLSFQEIALLKA RASQTLSFQEIALLKAVLVAGLYDNVGKII R A S L K A 2 0 0 0 0 2 1 0 0 1 3 1 0 1 0 2 1 0 0 0 0 0 14 0 1547.8559 A0A087WYN9;Q7Z478 A0A087WYN9 1204 1217 DHX29 ATP-dependent RNA helicase DHX29 yes no 2 0.019444 63.864 1 1.0733 1.3504 NaN 1 Median 1.0733 1.3504 NaN 1 0 Median NaN NaN NaN 0 0 Median 1562700 691330 871330 1562700 691330 871330 0 0 0 1050 364 1082 4058 6168 6168 1 ASREEILAQAK QAQMKDCMRELDDTRASREEILAQAKENEK DDTRASREEILAQAKENEKKLKSMEAEMIQ R A S A K E 3 1 0 0 0 1 2 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 11 1 1214.6619 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1659 1669 MYH9;FLJ00279 Myosin-9 no no 2;3 9.7461E-08 150.15 8 2 0.98153 1.302 55.96 9 Median 0.95396 1.264 8.5872 8 0 Median 4.1853 6.5807 NaN 1 0 Median 589870000 290300000 299570000 562370000 287570000 274800000 27497000 2731200 24766000 1051 61;490 1083 4059;4060;4061;4062;4063;4064;4065;4066;4067;4068 6169;6170;6171;6172;6173;6174;6175;6176;6177;6178;6179;6180;6181;6182 6175 14 ASSAAAAAALSR ______________________________ STRASSAAAAAALSRRGRRGRCDETAAAKT R A S S R R 7 1 0 0 0 0 0 0 0 0 1 0 0 0 0 3 0 0 0 0 0 0 12 0 1045.5516 Q8NCN4 Q8NCN4 10 21 RNF169 E3 ubiquitin-protein ligase RNF169 yes yes 2 0.015793 47.361 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3392700 3392700 0 0 0 0 3392700 3392700 0 1052 1651 1084 4069 6183 6183 1 ASSAQSGGSSGGPAVPTVQR ______________________________ SGGSSGGPAVPTVQRGIIKMVLSGCAIIVR M A S Q R G 3 1 0 0 0 2 0 4 0 0 0 0 0 0 2 5 1 0 0 2 0 0 20 0 1799.8762 A0A140VK49;Q7KZF4;B4E299;I6TRR8 A0A140VK49 2 21 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 7.336E-05 52.265 1 0.76327 1.071 NaN 1 Median 0.76327 1.071 NaN 1 0 Median NaN NaN NaN 0 0 Median 6030500 3373400 2657100 6030500 3373400 2657100 0 0 0 1053 508 1085 4070 6184 6184 1 ASSASAPSSTPTGTTVVK HVTSNPVHAADSPAKASSASAPSSTPTGTT ASAPSSTPTGTTVVKVTPDLKPTEASSSAF K A S V K V 3 0 0 0 0 0 0 1 0 0 0 1 0 0 2 5 4 0 0 2 0 0 18 0 1647.8315 A0A024R3K9;A0A024R3N2;Q6P4R8 A0A024R3K9 1026 1043 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2 8.3108E-06 101.39 3 1 0.7942 1.0003 4.0282 3 Median 0.81431 1.0337 4.6361 2 0 Median 0.67625 0.99261 NaN 1 0 Median 12908000 6948200 5959700 5870700 2924700 2946000 7037300 4023600 3013700 1054 101 1086 4071;4072;4073;4074 6185;6186;6187;6188;6189 6188 5 ASSEGTIPQVQR LSQKLKENHQSRKQKASSEGTIPQVQREEP KQKASSEGTIPQVQREEPAPEEEEPLLLQR K A S Q R E 1 1 0 0 0 2 1 1 0 1 0 0 0 0 1 2 1 0 0 1 0 0 12 0 1271.647 Q9BVJ6;B4E343 Q9BVJ6 478 489 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 0.0021413 65.719 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12087000 0 12087000 0 0 0 12087000 0 12087000 1055 1719 1087 4075;4076 6190;6191 6190 2 ASSEGTIPQVQREEPAPEEEEPLLLQRPER LSQKLKENHQSRKQKASSEGTIPQVQREEP APEEEEPLLLQRPERVQTLEELEELGKEEC K A S E R V 2 3 0 0 0 3 8 1 0 1 3 0 0 0 5 2 1 0 0 1 0 0 30 2 3413.7063 Q9BVJ6;B4E343 Q9BVJ6 478 507 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 4 6.6993E-12 57.299 4 2 0.88001 1.0747 21.087 6 Median 0.91764 1.1321 8.7025 4 0 Median 0.67071 0.77507 3.3337 2 0 Median 391630000 210430000 181200000 195420000 100990000 94432000 196210000 109440000 86768000 1056 1719 1088 4077;4078;4079;4080;4081;4082 6192;6193;6194;6195;6196;6197;6198;6199;6200;6201;6202;6203;6204;6205;6206;6207;6208;6209 6198 18 ASSGDVPAAAASAVAEPASDVNRR TQSALVSGRPPEPTRASSGDVPAAAASAVA AASAVAEPASDVNRRTSVLFCKSKSVSPPK R A S R R T 8 2 1 2 0 0 1 1 0 0 0 0 0 0 2 4 0 0 0 3 0 0 24 1 2268.1095 Q86X06;A0A024R4V5;B4E3L9;B7Z926;Q9Y4Q3;B4DZC2 Q86X06 857 880 BRD1;DKFZp434B094 yes no 3 0.0066886 41.256 2 1.1357 1.5571 NaN 1 Median 1.1357 1.5571 NaN 1 0 Median NaN NaN NaN 0 0 Median 5717900 4892900 825010 5717900 4892900 825010 0 0 0 1057 128 1089 4083;4084 6210;6211 6210 2 ASSGLLYPLER FQGHSGAQCITCSYKASSGLLYPLERGFIY CSYKASSGLLYPLERGFIYVHKPPVHIRFD K A S E R G 1 1 0 0 0 0 1 1 0 0 3 0 0 0 1 2 0 0 1 0 0 0 11 0 1204.6452 A0A024R4Z6;Q08945 A0A024R4Z6 347 357 SSRP1 FACT complex subunit SSRP1 yes no 2 1.0895E-18 195.57 4 2 0.76734 1.1334 6.3388 6 Median 0.78471 1.0829 4.3529 4 0 Median 0.74037 1.2187 0.20212 2 0 Median 1197500000 656670000 540850000 864040000 474380000 389660000 333480000 182290000 151190000 1058 132 1090 4085;4086;4087;4088;4089;4090 6212;6213;6214;6215;6216;6217;6218;6219;6220;6221;6222;6223;6224;6225;6226 6213 15 ASSLGEIDESSELR LDFDLEPEPPPAPPRASSLGEIDESSELRV RASSLGEIDESSELRVLDIPGQDSETVFDI R A S L R V 1 1 0 1 0 0 3 1 0 1 2 0 0 0 0 4 0 0 0 0 0 0 14 0 1491.7053 Q16513 Q16513 581 594 PKN2 Serine/threonine-protein kinase N2 yes yes 2 0.024341 41.242 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8642700 0 8642700 0 0 0 8642700 0 8642700 1059 1519 1091 4091;4092 6227;6228 6227 2 ASSLISLLK VIILSLDRSDEDKEKASSLISLLKQEGIAT DEDKEKASSLISLLKQEGIATSDNFMQAFL K A S L K Q 1 0 0 0 0 0 0 0 0 1 3 1 0 0 0 3 0 0 0 0 0 0 9 0 930.57498 D3DQV9;Q59G42;B4DZF2;P78344;H0Y3P2;Q2TU89 D3DQV9 600 608 EIF4G2;AAG1 Eukaryotic translation initiation factor 4 gamma 2 no no 2 0.0030322 90.657 4 1 0.30811 0.38765 13.345 3 Median 0.30811 0.38765 13.345 3 0 Median NaN NaN NaN 0 0 Median 19053000 12622000 6430900 16875000 12622000 4253200 2177800 0 2177800 1060 877 1092 4093;4094;4095;4096;4097 6229;6230;6231;6232;6233;6234 6234 6 ASSSLGLQDFDLLR VGEEKEAMNTRESGKASSSLGLQDFDLLRV KASSSLGLQDFDLLRVIGRGSYAKVLLVRL K A S L R V 1 1 0 2 0 1 0 1 0 0 4 0 0 1 0 3 0 0 0 0 0 0 14 0 1520.7835 B5BUK7;B2RCZ4;P41743 B5BUK7 236 249 PRKCI Protein kinase C;Protein kinase C iota type yes no 2 1.4775E-06 134.98 1 0.30421 0.42723 NaN 1 Median 0.30421 0.42723 NaN 1 0 Median NaN NaN NaN 0 0 Median 2207000 1534800 672230 2207000 1534800 672230 0 0 0 1061 733 1093 4098 6235 6235 1 ASTAASSALGFSK KNLSDACKPLKKRNRASTAASSALGFSKSS NRASTAASSALGFSKSSSPSASLTENEVSD R A S S K S 4 0 0 0 0 0 0 1 0 0 1 1 0 1 0 4 1 0 0 0 0 0 13 0 1196.6037 O96028;Q05CW4;H0Y9U6 O96028 603 615 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 2 3.4025E-08 109.39 2 2 0.76467 1.6144 19.26 3 Plateau 1.3008 1.6229 NaN 1 0 Median 0.76286 1.1631 1.393 2 0 Median 79314000 44039000 35276000 35256000 19064000 16192000 44059000 24975000 19084000 1062 1228 1094 4099;4100;4101;4102 6236;6237;6238;6239;6240;6241 6239 6 ASTEGVAIQGQQGTR KNPPKNVQQHEKVQKASTEGVAIQGQQGTR ASTEGVAIQGQQGTRLLPEQLIKEAFILSD K A S T R L 2 1 0 0 0 3 1 3 0 1 0 0 0 0 0 1 2 0 0 1 0 0 15 0 1501.7485 Q92621 Q92621 70 84 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.00029066 97.957 3 1 1.1749 1.5555 179.56 2 Median 0.31992 0.43696 NaN 1 0 Median 4.3145 5.5371 NaN 1 0 Median 17977000 13972000 4004700 14401000 13150000 1250900 3575600 821750 2753800 1063 1673 1095 4103;4104;4105;4106 6242;6243;6244;6245;6246 6243 5 ASTNAMLISAGLPPLK DREREREKEKEKELRASTNAMLISAGLPPL STNAMLISAGLPPLKASHSAHSTHSAHSTH R A S L K A 3 0 1 0 0 0 0 1 0 1 3 1 1 0 2 2 1 0 0 0 0 0 16 0 1582.8753 O43143 O43143 63 78 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.00078638 42.789 1 1 0.59489 0.82136 20.41 2 Median 0.57449 0.71098 NaN 1 0 Median 0.61602 0.94888 NaN 1 0 Median 25286000 15336000 9949500 2711300 1470600 1240700 22574000 13866000 8708700 1064 1180 1096;1097 4107;4108 6247;6248 6248 426 1 ASTNIQDTEGNTPLHLACDEERVEEAK AKGNLKMIHILLYYKASTNIQDTEGNTPLH PLHLACDEERVEEAKLLVSQGASIYIENKE K A S A K L 3 1 2 2 1 1 5 1 1 1 2 1 0 0 1 1 3 0 0 1 0 0 27 1 3026.3887 B1AJY5;B1AJY7;O75832 B1AJY5 122 148 PSMD10 26S proteasome non-ATPase regulatory subunit 10 yes no 4 7.1908E-07 45.546 3 0.37253 0.49503 14.525 2 Median 0.37253 0.49503 14.525 2 0 Median NaN NaN NaN 0 0 Median 23122000 18632000 4490500 23122000 18632000 4490500 0 0 0 1065 671 1098 4109;4110;4111 6249;6250;6251;6252 6251 4 ASVITQVFHVPLEER QEPAGAWGNKIRPIKASVITQVFHVPLEER ASVITQVFHVPLEERKYKDMNQFGEGEQAK K A S E R K 1 1 0 0 0 1 2 0 1 1 1 0 0 1 1 1 1 0 0 3 0 0 15 0 1723.9257 B2R5V9;A0A024R4E5;Q00341;C9JT62;C9JHS7;C9JK79;C9JHZ8;C9JZI8;C9J5E5;C9JIZ1 B2R5V9 73 87 HDLBP Vigilin no no 3 0.00012384 90.689 4 0.51193 0.6861 5.7776 2 Median 0.51193 0.6861 5.7776 2 0 Median NaN NaN NaN 0 0 Median 27256000 18606000 8650100 27256000 18606000 8650100 0 0 0 1066 122 1099 4112;4113;4114;4115 6253;6254;6255;6256;6257;6258 6256 6 ASVPSVQIQGQR QHSSTGPPPLLLAPRASVPSVQIQGQRIIQ APRASVPSVQIQGQRIIQQGLIRVANVPNT R A S Q R I 1 1 0 0 0 3 0 1 0 1 0 0 0 0 1 2 0 0 0 2 0 0 12 0 1268.6837 A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7 A0A024R7K7 274 285 GATAD2A Transcriptional repressor p66-alpha yes no 2 0.001419 83.647 2 2.6635 3.7046 7.0359 2 Median 2.6635 3.7046 7.0359 2 0 Median NaN NaN NaN 0 0 Median 7576800 2184300 5392500 7576800 2184300 5392500 0 0 0 1067 179 1100 4116;4117 6259;6260;6261 6261 3 ASVQGVPLESSNNDIFLPVK KENNKSFQSDDSSLRASVQGVPLESSNNDI VPLESSNNDIFLPVKQKIQCQQEKKAPLHN R A S V K Q 1 0 2 1 0 1 1 1 0 1 2 1 0 1 2 3 0 0 0 3 0 0 20 0 2113.1055 Q6P0N0;G5E9K5 Q6P0N0 182 201 MIS18BP1 Mis18-binding protein 1 yes no 2 1.5436E-07 108.97 4 0.68211 0.86413 8.9785 4 Median 0.68211 0.86413 8.9785 4 0 Median NaN NaN NaN 0 0 Median 31961000 18865000 13095000 31961000 18865000 13095000 0 0 0 1068 1588 1101 4118;4119;4120;4121 6262;6263;6264;6265;6266;6267;6268;6269;6270 6262 9 ASVSITFDNSDK LQDLVYKNGQAGITKASVSITFDNSDKKQS ITKASVSITFDNSDKKQSPLGFEVHDEITV K A S D K K 1 0 1 2 0 0 0 0 0 1 0 1 0 1 0 3 1 0 0 1 0 0 12 0 1282.6041 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q6P712 A0A024R158 77 88 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 8.6457E-22 183.72 4 2 0.66811 1.0011 10.099 6 Linear 0.6828 0.85341 6.7858 4 0 Median 0.62321 0.99594 4.8704 2 0 Median 246680000 149890000 96798000 118320000 70401000 47915000 128370000 79485000 48883000 1069 50 1102 4122;4123;4124;4125;4126;4127 6271;6272;6273;6274;6275;6276;6277;6278;6279;6280;6281 6276 11 ASVSITFDNSDKK LQDLVYKNGQAGITKASVSITFDNSDKKQS TKASVSITFDNSDKKQSPLGFEVHDEITVT K A S K K Q 1 0 1 2 0 0 0 0 0 1 0 2 0 1 0 3 1 0 0 1 0 0 13 1 1410.6991 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q6P712 A0A024R158 77 89 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2;3 7.0639E-17 163.9 6 3 0.62605 0.8421 11.881 7 Median 0.65181 0.80018 4.3867 4 0 Median 0.61415 0.98387 2.2642 3 0 Median 368310000 221150000 147160000 232120000 139890000 92230000 136190000 81265000 54929000 1070 50 1103 4128;4129;4130;4131;4132;4133;4134;4135;4136 6282;6283;6284;6285;6286;6287;6288;6289;6290;6291;6292;6293;6294 6287 13 ASVSQVEADLK PQDFLDRLSSLDNLKASVSQVEADLKMLRT DNLKASVSQVEADLKMLRTAVDSLVAYSVK K A S L K M 2 0 0 1 0 1 1 0 0 0 1 1 0 0 0 2 0 0 0 2 0 0 11 0 1145.5928 B3KVX6;Q8TB01;Q6NWZ1;A0A024RBH2;Q07065 B3KVX6 460 470 CKAP4 Cytoskeleton-associated protein 4 yes no 2 0.019126 90.827 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1071 272 1104 4137 6295 6295 1 ASVVTLPVYLNFTR LTQLRWVKQTNTEKKASVVTLPVYLNFTRA KASVVTLPVYLNFTRADLIFTVDFEIATKE K A S T R A 1 1 1 0 0 0 0 0 0 0 2 0 0 1 1 1 2 0 1 3 0 0 14 0 1578.877 Q14204 Q14204 4602 4615 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00017862 89.548 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12798000 12798000 0 12798000 12798000 0 0 0 0 1072 1483 1105 4138;4139;4140;4141 6296;6297;6298;6299;6300 6299 5 ASYAEQLSMLK VAEQERTAQQLRAEKASYAEQLSMLKKAHG RAEKASYAEQLSMLKKAHGLLAEENRGLGE K A S L K K 2 0 0 0 0 1 1 0 0 0 2 1 1 0 0 2 0 0 1 0 0 0 11 0 1239.6169 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q7Z757;Q96HN5;H0YFY6;K4DIE0;Q4LE64;Q14980 Q4LE64 1431 1441 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.0051577 52.705 2 0.30459 0.44899 NaN 1 Median NaN NaN NaN 0 0 Median 0.30459 0.44899 NaN 1 0 Median 11153000 9002300 2151200 0 0 0 11153000 9002300 2151200 1073 148;1499 1106 4142;4143 6301;6302 6302 74 2 ASYVAPLTAQPATYR FFGRDRSPLRRSPPRASYVAPLTAQPATYR ASYVAPLTAQPATYRAQPSVSLGAAYRAQP R A S Y R A 4 1 0 0 0 1 0 0 0 0 1 0 0 0 2 1 2 0 2 1 0 0 15 0 1607.8308 A0A0S2Z4Z0;Q96PK6;Q59GV2 A0A0S2Z4Z0 224 238 RBM14 RNA-binding protein 14 yes no 2 4.9125E-07 110.38 3 2 0.46103 0.61463 55.218 5 Median 0.44992 0.6132 6.6234 3 0 Median 1.03 1.6038 11.989 2 0 Median 108140000 62377000 45766000 59916000 37902000 22014000 48227000 24475000 23752000 1074 472 1107 4144;4145;4146;4147;4148 6303;6304;6305;6306;6307;6308;6309;6310;6311 6307 9 ATAAPAGAPPQPQDLEFTK SFSRFYSLKVAPKVKATAAPAGAPPQPQDL PAGAPPQPQDLEFTKLPNGLVIASLENYSP K A T T K L 5 0 0 1 0 2 1 1 0 0 1 1 0 1 4 0 2 0 0 0 0 0 19 0 1908.9581 H3BSJ9;H3BRG4;P22695;H3BUE4;H3BUI9 H3BSJ9 24 42 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes no 2 0.0021177 51.875 2 0.66289 0.99618 6.7893 2 Median NaN NaN NaN 0 0 Median 0.66289 0.99618 6.7893 2 0 Median 21550000 12333000 9216400 0 0 0 21550000 12333000 9216400 1075 1108 1108 4149;4150 6312;6313 6312 2 ATAEALLALPVLR RSVLVMMLEPDPKLRATAEALLALPVLRQP LRATAEALLALPVLRQPRAWGVLWCMAAEA R A T L R Q 4 1 0 0 0 0 1 0 0 0 4 0 0 0 1 0 1 0 0 1 0 0 13 0 1336.8078 A6NHV6;Q0IJ49;B4DZM6;Q99640 A6NHV6 339 351 PKMYT1 Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase yes no 2 0.0020126 53.756 1 0.3918 0.52728 NaN 1 Median 0.3918 0.52728 NaN 1 0 Median NaN NaN NaN 0 0 Median 5741300 3916400 1824900 5741300 3916400 1824900 0 0 0 1076 569 1109 4151 6314 6314 1 ATAENNFEVELNYGLR ETDRTFSSESTLAQKATAENNFEVELNYGL TAENNFEVELNYGLRRWNGRRLRTYGKAPF K A T L R R 2 1 3 0 0 0 3 1 0 0 2 0 0 1 0 0 1 0 1 1 0 0 16 0 1838.8799 Q9NSI6 Q9NSI6 2079 2094 BRWD1 Bromodomain and WD repeat-containing protein 1 yes yes 2 8.8156E-06 100.73 1 0.55787 0.78293 NaN 1 Median 0.55787 0.78293 NaN 1 0 Median NaN NaN NaN 0 0 Median 2228700 1168400 1060300 2228700 1168400 1060300 0 0 0 1077 1758 1110 4152 6315 6315 0 ATAFNEQVDK KLFSLELVDESGEIRATAFNEQVDKFFPLI SGEIRATAFNEQVDKFFPLIEVNKVYYFSK R A T D K F 2 0 1 1 0 1 1 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 10 0 1121.5353 P27694 P27694 235 244 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 2 0.012122 100.02 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1078 1302 1111 4153 6316 6316 1 ATAGDTHLGGEDFDNR DVSILTIDDGIFEVKATAGDTHLGGEDFDN TAGDTHLGGEDFDNRLVNHFVEEFKRKHKK K A T N R L 2 1 1 3 0 0 1 3 1 0 1 0 0 1 0 0 2 0 0 0 0 0 16 0 1674.7234 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DI39;B4DWK5;B4DNT8;B4DFN9;B4DVU9;B4E1S9;B4E388;V9GZ37;B3KTT5;B4DNV4;Q9UQC1;Q53FC7;B3KSM6;B2R6X5;P17066;B4DHP5;P48741;B4DXY3;Q53FA3;B4DI54;P34931;B2RCQ9 A8K5I0 221 236 HEL-S-103;HSPA1B;HSPA1A;HSP70-1;HSPA6;HSPA7;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1-like no no 2;3 1.5042E-60 225.79 6 4 0.84835 1.1499 44.946 10 Median 0.71537 0.97402 10.028 6 0 Median 1.5249 2.5203 5.2771 4 0 Linear 441390000 230540000 210850000 283030000 164650000 118380000 158360000 65887000 92473000 1079 439;701;810 1112 4154;4155;4156;4157;4158;4159;4160;4161;4162;4163 6317;6318;6319;6320;6321;6322;6323;6324;6325;6326;6327;6328;6329;6330;6331;6332;6333;6334;6335 6318 19 ATALPLLK GVTNDQVDPSVDVLKATALPLLKQFGIDGE PSVDVLKATALPLLKQFGIDGESFELKIVR K A T L K Q 2 0 0 0 0 0 0 0 0 0 3 1 0 0 1 0 1 0 0 0 0 0 8 0 825.53239 Q9Y2P8 Q9Y2P8 134 141 RCL1 RNA 3-terminal phosphate cyclase-like protein yes yes 2 0.032376 79.116 3 2 0.95915 1.2431 5.7815 5 Median 0.97206 1.2622 6.4042 3 0 Median 0.81085 1.2018 4.7815 2 0 Median 56230000 30900000 25330000 42693000 22789000 19905000 13537000 8111400 5425200 1080 1806 1113 4164;4165;4166;4167;4168 6336;6337;6338;6339;6340 6336 5 ATANHAAELLAK HQVCVQILQKLTGQKATANHAAELLAKQFC GQKATANHAAELLAKQFCTRGSPQETTVLL K A T A K Q 5 0 1 0 0 0 1 0 1 0 2 1 0 0 0 0 1 0 0 0 0 0 12 0 1208.6513 B7Z8H0;Q96F82;A8K794;Q13415 B7Z8H0 587 598 ORC1L;ORC1 Origin recognition complex subunit 1 yes no 2 1.7055E-07 136.81 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1081 630 1114 4169 6341 6341 1 ATAPVPTVGEGYGYGHESELSQASAAAR ASTSYYGRDRSPLRRATAPVPTVGEGYGYG YGHESELSQASAAARNSLYDMARYEREQYA R A T A R N 6 1 0 0 0 1 3 4 1 0 1 0 0 0 2 3 2 0 2 2 0 0 28 0 2775.31 A8K9U0;Q9BWF3;E9PB51 A8K9U0 314 341 RBM4 RNA-binding protein 4 yes no 3 8.3565E-12 90.545 4 0.36461 0.50905 13.743 4 Median 0.36461 0.50905 13.743 4 0 Median NaN NaN NaN 0 0 Median 25777000 17295000 8482100 25777000 17295000 8482100 0 0 0 1082 650 1115 4170;4171;4172;4173 6342;6343;6344;6345;6346;6347;6348;6349;6350;6351 6343 10 ATATHTDVLK RLAELLTQQHGLQCRATATHTDVLKDGFVF GLQCRATATHTDVLKDGFVFRIRVAYQREP R A T L K D 2 0 0 1 0 0 0 0 1 0 1 1 0 0 0 0 3 0 0 1 0 0 10 0 1055.5611 Q9H6R4;A0A0A0MRW6;B4DF80;B3KPN5 Q9H6R4 779 788 NOL6 Nucleolar protein 6 yes no 2 3.0587E-11 139.02 2 2 1.1565 1.4526 20.29 3 Median 1.1565 1.4526 NaN 1 0 Median 1.0507 1.4983 28.582 2 0 Median 58673000 18425000 40248000 37972000 7703000 30269000 20701000 10722000 9979400 1083 1738 1116 4174;4175;4176;4177 6352;6353;6354;6355;6356;6357 6356 6 ATCAPQHGAPGPGPADASK SLHETSSVFVDSLTKATCAPQHGAPGPGPA PQHGAPGPGPADASKVVAKGLGLSKAYVGQ K A T S K V 5 0 0 1 1 1 0 3 1 0 0 1 0 0 4 1 1 0 0 0 0 0 19 0 1788.8213 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;Q86TQ3 P21333 2541 2559 FLNA;FLJ00119 Filamin-A yes no 2;3 2.8908E-62 215.15 6 0.9035 1.1128 15.863 6 Median 0.9035 1.1128 15.863 6 0 Median NaN NaN NaN 0 0 Median 85362000 44797000 40565000 85362000 44797000 40565000 0 0 0 1084 1287 1117 4178;4179;4180;4181;4182;4183 6358;6359;6360;6361;6362;6363;6364;6365;6366;6367;6368 6361 11 ATCFAYGQTGSGK FTARPLVQTIFEGGKATCFAYGQTGSGKTH GKATCFAYGQTGSGKTHTMGGDLSGKAQNA K A T G K T 2 0 0 0 1 1 0 3 0 0 0 1 0 1 0 1 2 0 1 0 0 0 13 0 1346.5925 A8K3S3;A0A140VKF1;Q99661;B7Z7M6;B7Z6Q6;Q8N5N1;Q5JR91 A8K3S3 342 354 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 2 1.2853E-12 126.03 2 2 0.73441 0.99268 13.554 2 Median 0.71263 0.90196 NaN 1 0 Median 0.75686 1.0925 NaN 1 0 Median 24111000 12332000 11779000 16561000 9366100 7194700 7549800 2965500 4584300 1085 514 1118 4184;4185;4186;4187 6369;6370;6371;6372;6373;6374 6371 6 ATDENPCGIDSECINR IFTADLSEIPRCNCKATDENPCGIDSECIN TDENPCGIDSECINRMLLYECHPTVCPAGG K A T N R M 1 1 2 2 2 0 2 1 0 2 0 0 0 0 1 1 1 0 0 0 0 0 16 0 1849.7571 B2RWP5;Q96L73;Q658U6;Q9H6B5;A0A1D8GZ55;A0A1D8GZ56;Q96DQ7 B2RWP5 1630 1645 NSD1;DKFZp666C163 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 2 3.206E-13 157.56 3 0.8635 1.1886 1.5093 3 Median 0.8635 1.1886 1.5093 3 0 Median NaN NaN NaN 0 0 Median 6579900 3386600 3193300 6579900 3386600 3193300 0 0 0 1086 749 1119 4188;4189;4190 6375;6376;6377;6378;6379;6380;6381 6379 7 ATDTLPASIPHVIAR IIVIHPGSTTLRIGRATDTLPASIPHVIAR ATDTLPASIPHVIARRHKQQGQPLYKDSWL R A T A R R 3 1 0 1 0 0 0 0 1 2 1 0 0 0 2 1 2 0 0 1 0 0 15 0 1560.8624 Q9H981 Q9H981 63 77 ACTR8 Actin-related protein 8 yes yes 3 0.027698 21.666 2 0.76902 1.097 4.2567 2 Median NaN NaN NaN 0 0 Median 0.76902 1.097 4.2567 2 0 Median 22434000 11983000 10451000 0 0 0 22434000 11983000 10451000 1087 1744 1120 4191;4192 6382;6383 6383 2 ATDTSQGELVHPK ______________________________ ______________________________ M A T P K A 1 0 0 1 0 1 1 1 1 0 1 1 0 0 1 1 2 0 0 1 0 0 13 0 1381.6838 Q5SSJ5;X6RGJ2;B0QZK9;B0QZK8 Q5SSJ5 2 14 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 4.0916E-23 171.92 4 2 0.49656 0.64626 9.1629 6 Median 0.50354 0.65244 2.1398 4 0 Median 0.34923 0.55155 1.3945 2 0 Median 707270000 487300000 219960000 338400000 214230000 124170000 368870000 273080000 95791000 1088 1565 1121 4193;4194;4195;4196;4197;4198 6384;6385;6386;6387;6388;6389;6390;6391;6392;6393 6389 10 ATDVHPLQR ITPGICFSTASLVLRATDVHPLQRIDMGRF ASLVLRATDVHPLQRIDMGRFDLIGLEGRV R A T Q R I 1 1 0 1 0 1 0 0 1 0 1 0 0 0 1 0 1 0 0 1 0 0 9 0 1035.5461 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2;G1UI29;A0A087X0E3;B3KN63 A0A0A0MS59 735 743 SRCAP Helicase SRCAP yes no 2 0.0036179 66.682 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1089 394 1122 4199 6394 6394 1 ATEALCWAEGQR ANYFQEKFFPGHESRATEALCWAEGQRLFS ESRATEALCWAEGQRLFSAGLNGEIMEYDL R A T Q R L 3 1 0 0 1 1 2 1 0 0 1 0 0 0 0 0 1 1 0 0 0 0 12 0 1390.6299 Q969X6;H3BSH7;H3BPD7;I3L4T9;J3KSI1 Q969X6 62 73 CIRH1A Cirhin yes no 2 0.0013553 73.327 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5793200 5793200 0 0 0 0 5793200 5793200 0 1090 1680 1123 4200 6395 6395 1 ATEMVEVGADDDEGGAERGEAGDLR FHVKKIREGQVEVLKATEMVEVGADDDEGG DDEGGAERGEAGDLRRGSSPDVHALLEITE K A T L R R 4 2 0 4 0 0 5 5 0 0 1 0 1 0 0 0 1 0 0 2 0 0 25 1 2548.0984 B4DPZ5;B4DNU9;Q6NZI2;B3KRY5 B4DPZ5 311 335 PTRF Polymerase I and transcript release factor yes no 3 9.2357E-05 40.682 1 0.99733 1.3626 NaN 1 Median NaN NaN NaN 0 0 Median 0.99733 1.3626 NaN 1 0 Median 6914200 2943000 3971200 0 0 0 6914200 2943000 3971200 1091 842 1124 4201 6396 6396 296 1 ATENDIANFFSPLNPIR FHGGHFVHMRGLPFRATENDIANFFSPLNP ENDIANFFSPLNPIRVHIDIGADGRATGEA R A T I R V 2 1 3 1 0 0 1 0 0 2 1 0 0 2 2 1 1 0 0 0 0 0 17 0 1917.9585 Q53F48;A0A024QZK8;P31942;B4DHY1;A0A024QZP1 Q53F48 206 222 HNRPH3;HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 2 6.4611E-32 215.34 4 0.26834 0.35819 8.6389 2 Median 0.26834 0.35819 8.6389 2 0 Median NaN NaN NaN 0 0 Median 71005000 61260000 9745300 71005000 61260000 9745300 0 0 0 1092 15 1125 4202;4203;4204;4205 6397;6398;6399;6400;6401 6398 5 ATENDIYNFFSPLNPMR STTGHCVHMRGLPYRATENDIYNFFSPLNP ENDIYNFFSPLNPMRVHIEIGPDGRVTGEA R A T M R V 1 1 3 1 0 0 1 0 0 1 1 0 1 2 2 1 1 0 1 0 0 0 17 0 2027.9411 P55795;B4DFK9;B4DP00 P55795 300 316 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes no 2 0.0057277 84.365 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1646700 1646700 0 1646700 1646700 0 0 0 0 1093 1380 1126 4206;4207 6402;6403 6402 2 ATENDIYNFFSPLNPVR STTGHCVHMRGLPYRATENDIYNFFSPLNP ENDIYNFFSPLNPVRVHIEIGPDGRVTGEA R A T V R V 1 1 3 1 0 0 1 0 0 1 1 0 0 2 2 1 1 0 1 1 0 0 17 0 1995.969 A0A024R7T3;P52597;B4DKS8;B4DP51;G8JLB6;P31943;E9PCY7;H0YB39;H0YBG7;Q68DG4;H0YBD7 G8JLB6 300 316 HNRPF;HNRNPF;HNRNPH1;DKFZp686A15170 Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed no no 2 9.6855E-61 228.7 4 0.30744 0.42378 3.8307 4 Median 0.30744 0.42378 3.8307 4 0 Median NaN NaN NaN 0 0 Median 420080000 320640000 99437000 420080000 320640000 99437000 0 0 0 1094 1084;184 1127 4208;4209;4210;4211 6404;6405;6406;6407;6408;6409;6410;6411 6405 8 ATENPEQVASEGLPEPVLR TGSQGLSSLAEEAARATENPEQVASEGLPE PEQVASEGLPEPVLRKVELPVPTHRRPVQA R A T L R K 2 1 1 0 0 1 4 1 0 0 2 0 0 0 3 1 1 0 0 2 0 0 19 0 2035.0222 K7ES61;A0A024R7C5;Q9BYD3;K7EKI4;K7ELF1;K7ELQ0;X6RAY8 K7ES61 31 49 MRPL4 39S ribosomal protein L4, mitochondrial yes no 2 1.9371E-07 130.47 2 0.5179 0.72273 6.8496 2 Median 0.5179 0.72273 6.8496 2 0 Median NaN NaN NaN 0 0 Median 9403300 5992600 3410700 9403300 5992600 3410700 0 0 0 1095 174 1128 4212;4213 6412;6413;6414;6415 6413 3 ATEQSLDPPIEEEHQLR NEAVAALCGDQEIMKATEQSLDPPIEEEHQ EQSLDPPIEEEHQLRNSIEKLRARLEADEK K A T L R N 1 1 0 1 0 2 4 0 1 1 2 0 0 0 2 1 1 0 0 0 0 0 17 0 1990.9596 P49454 P49454 2380 2396 CENPF Centromere protein F yes yes 3 1.1881E-05 90.259 4 0.69148 0.93207 25.077 4 Median 0.69148 0.93207 25.077 4 0 Median NaN NaN NaN 0 0 Median 38319000 24698000 13620000 38319000 24698000 13620000 0 0 0 1096 1351 1129 4214;4215;4216;4217 6416;6417;6418;6419 6418 4 ATFAFGAQTSTTADQGAAK SMTKPSEKESEQPAKATFAFGAQTSTTADQ FGAQTSTTADQGAAKPVFSFLNNSSSSSST K A T A K P 6 0 0 1 0 2 0 2 0 0 0 1 0 2 0 1 4 0 0 0 0 0 19 0 1842.8748 A0A024QZW7;P49790 A0A024QZW7 1169 1187 NUP153 Nuclear pore complex protein Nup153 yes no 2 0.00027739 97.273 1 1 1.0817 1.5184 NaN 1 Median NaN NaN NaN 0 0 Median 1.0817 1.5184 NaN 1 0 Median 4070900 1921600 2149300 0 0 0 4070900 1921600 2149300 1097 22 1130 4218;4219 6420;6421 6421 2 ATFCLPILGVK GLRFKKAHVTHPELKATFCLPILGVKKNPS PELKATFCLPILGVKKNPSSPLYTTLGVIT K A T V K K 1 0 0 0 1 0 0 1 0 1 2 1 0 1 1 0 1 0 0 1 0 0 11 0 1217.6842 Q5J7U2;O95478 Q5J7U2 190 200 CDK105;NSA2 Ribosome biogenesis protein NSA2 homolog yes no 2 0.00013656 128.38 3 1 0.73732 0.92511 9.6212 4 Median 0.74139 0.9333 1.5232 3 0 Median 0.50831 0.76992 NaN 1 0 Median 96904000 57203000 39701000 73691000 41695000 31996000 23213000 15508000 7705100 1098 1221 1131 4220;4221;4222;4223 6422;6423;6424;6425;6426;6427 6422 6 ATFDAISK TSARGCTATLGNFAKATFDAISKTYSYLTP TLGNFAKATFDAISKTYSYLTPDLWKETVF K A T S K T 2 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 8 0 851.43888 P15880;Q8N5L9;Q6IPX5;H0YEN5;E9PQD7;Q9BSW5;O60249;Q6ZNN8;Q8NI62 P15880 239 246 RPS2;OK/KNS-cl.6 40S ribosomal protein S2 no no 1;2 0.0040249 150.05 5 2 0.72298 0.90571 12.759 7 Median 0.74746 0.94204 9.1574 5 0 Median 0.47055 0.75103 3.1697 2 0 Median 372430000 227230000 145190000 237570000 135280000 102290000 134850000 91950000 42903000 1099 1269;1657 1132 4224;4225;4226;4227;4228;4229;4230 6428;6429;6430;6431;6432;6433;6434 6428 7 ATFYGEQVDYYK ELVKLQQTYAALNSKATFYGEQVDYYKSYI NSKATFYGEQVDYYKSYIKTCLDNLASKGK K A T Y K S 1 0 0 1 0 1 1 1 0 0 0 1 0 1 0 0 1 0 3 1 0 0 12 0 1482.6667 A4QPB0;A0A024RC65;P46940;H0YLE8;B4E2M0;B4DNP4 A4QPB0 1517 1528 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.014132 74.962 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7327500 7327500 0 7327500 7327500 0 0 0 0 1100 287 1133 4231;4232;4233 6435;6436;6437 6437 3 ATGAQDFSDCCGQKPTGPGGPLIQNVHASK APSDLGLSRPMPEPKATGAQDFSDCCGQKP TGPGGPLIQNVHASKRILFSIVHDKSEKWD K A T S K R 3 0 1 2 2 3 0 5 1 1 1 2 0 1 3 2 2 0 0 1 0 0 30 1 3097.4346 Q75MX6;E9PFE2;Q59FS0;Q9UHL9 Q75MX6 295 324 GTF2IRD1 General transcription factor II-I repeat domain-containing protein 1 yes no 4 0.00020414 62.364 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2043300 0 2043300 2043300 0 2043300 0 0 0 1101 1024 1134 4234 6438 6438 1 ATGGGLSSVGGGSSTIK SGLGVGGGFSSSSGRATGGGLSSVGGGSST GGGLSSVGGGSSTIKYTTTSSSSRKSYKH_ R A T I K Y 1 0 0 0 0 0 0 6 0 1 1 1 0 0 0 4 2 0 0 1 0 0 17 0 1434.7314 CON__P04259;B4DKV4 CON__P04259 534 550 no no 2 2.1452E-05 70.563 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9871100 9871100 0 0 0 0 9871100 9871100 0 + 1102 953 1135 4235 6439 6439 1 ATGILLYGLASR AATQAQQTLGSTIDKATGILLYGLASRLRD IDKATGILLYGLASRLRDTRRLSFLVSYIA K A T S R L 2 1 0 0 0 0 0 2 0 1 3 0 0 0 0 1 1 0 1 0 0 0 12 0 1233.7081 B4DNN3;Q53HS0;A8K3A8;P47897;F2Z2V6;I3QNU8;B4DTH6;A0A0U1RQM8;A0A0U1RQU2;B7Z840;C9J165;A0A0U1RQT0;A0A0U1RRI9;A0A0U1RQE9;A0A0U1RQL2 B4DNN3 51 62 QARS Glutamine--tRNA ligase yes no 2 0.0026554 55.452 1 2 1.7077 2.3785 75.287 3 Median 0.48162 0.64871 NaN 1 0 Median 1.7209 2.3898 0.67328 2 0 Median 24129000 11463000 12666000 6788500 4737200 2051300 17340000 6725800 10614000 1103 591 1136 4236;4237;4238 6440;6441;6442 6441 3 ATGPPVSELITK KATKKAAGAGAAKRKATGPPVSELITKAVA KRKATGPPVSELITKAVAASKERNGLSLAA K A T T K A 1 0 0 0 0 0 1 1 0 1 1 1 0 0 2 1 2 0 0 1 0 0 12 0 1211.6762 P16401 P16401 38 49 HIST1H1B Histone H1.5 yes yes 2 5.0436E-12 162.64 12 2 0.59903 0.75804 37.993 5 Median 0.59903 0.75804 37.993 5 0 Median NaN NaN NaN 0 0 Median 10318000000 10298000000 19751000 6364500000 6344700000 19751000 3953500000 3953500000 0 1104 1273 1137 4239;4240;4241;4242;4243;4244;4245;4246;4247;4248;4249;4250;4251;4252 6443;6444;6445;6446;6447;6448;6449;6450;6451;6452;6453;6454;6455;6456;6457;6458;6459;6460;6461 6446 19 ATGPVVEQAVR AAYAIPMLQLLLHRKATGPVVEQAVRGLVL LHRKATGPVVEQAVRGLVLVPTKELARQAQ K A T V R G 2 1 0 0 0 1 1 1 0 0 0 0 0 0 1 0 1 0 0 3 0 0 11 0 1125.6142 Q9NY93;Q53HB9;H7C3E9;G3V0G3;F8WDT8 Q9NY93 74 84 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 0.00022891 94.409 3 2 0.99235 1.3336 12.443 5 Median 1.0544 1.4065 13.244 3 0 Median 0.83282 1.2781 6.0126 2 0 Median 108510000 53348000 55159000 68815000 32518000 36297000 39692000 20830000 18862000 1105 1768 1138 4253;4254;4255;4256;4257 6462;6463;6464;6465;6466;6467;6468;6469;6470 6467 9 ATGRPECFLTIQEGLASK WRRRTLERCLTEVGKATGRPECFLTIQEGL RPECFLTIQEGLASKFTSLTKVLYDFNKIL K A T S K F 2 1 0 0 1 1 2 2 0 1 2 1 0 1 1 1 2 0 0 0 0 0 18 1 1976.999 B3KPV5;O00566;U3KQ48 B3KPV5 21 38 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 3 0.021186 22.375 1 2 0.88488 1.1617 9.312 3 Plateau 0.88488 1.1617 NaN 1 0 Median 0.6683 1.0528 10.43 2 0 Median 46869000 22359000 24510000 21729000 9073000 12656000 25140000 13287000 11854000 1106 767 1139 4258;4259;4260 6471;6472;6473 6473 3 ATHGQTCARPMCIPPSYADLGK ______________________________ ARPMCIPPSYADLGKAARDIFNKGFGFGLV M A T G K A 3 1 0 1 2 1 0 2 1 1 1 1 1 0 3 1 2 0 1 0 0 0 22 1 2430.1243 A0A024QZT0;P45880;A0A0A0MR02;Q5JSD2;Q5JSD1 A0A024QZT0 2 23 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 3 0.028866 43.37 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 454280 0 454280 454280 0 454280 0 0 0 1107 20 1140 4261 6474 6474 1 ATIAGGGVIPHIHK QLAIRGDEELDSLIKATIAGGGVIPHIHKS KATIAGGGVIPHIHKSLIGKKGQQKTA___ K A T H K S 2 0 0 0 0 0 0 3 2 3 0 1 0 0 1 0 1 0 0 1 0 0 14 0 1369.783 Q71UI9;P0C0S5 Q71UI9 103 116 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z yes no 2;3;4 1.5808E-17 161.51 9 4 0.71277 0.9569 7.5886 8 Median 0.73817 0.97316 7.9938 5 0 Median 0.57543 0.90782 4.8411 3 0 Median 1991800000 1401400000 590390000 617760000 348860000 268900000 1374000000 1052500000 321490000 1108 1249 1141 4262;4263;4264;4265;4266;4267;4268;4269;4270;4271;4272;4273;4274 6475;6476;6477;6478;6479;6480;6481;6482;6483;6484;6485;6486;6487;6488;6489;6490;6491;6492;6493;6494;6495;6496;6497 6487 23 ATIGADFLTK LMNQYVNKKFSNQYKATIGADFLTKEVMVD SNQYKATIGADFLTKEVMVDDRLVTMQIWD K A T T K E 2 0 0 1 0 0 0 1 0 1 1 1 0 1 0 0 2 0 0 0 0 0 10 0 1035.5601 A0A158RFU6;P51149;C9J592;C9J4S4;C9J4V0;C9J8S3;B4DPH9;C9J7D1;C9IZZ0 A0A158RFU6 39 48 RAB7A Ras-related protein Rab-7a yes no 2 0.033471 70.399 1 0.69914 0.8764 NaN 1 Median 0.69914 0.8764 NaN 1 0 Median NaN NaN NaN 0 0 Median 7339700 4092400 3247300 7339700 4092400 3247300 0 0 0 1109 515 1142 4275 6498;6499 6499 2 ATILCTSYVQFK EISGIVEVVGRVTAKATILCTSYVQFKEDS TAKATILCTSYVQFKEDSHPFDLGLYNEAV K A T F K E 1 0 0 0 1 1 0 0 0 1 1 1 0 1 0 1 2 0 1 1 0 0 12 0 1429.7275 B5MC59;A4D105;P35244 B5MC59 38 49 RPA3 Replication protein A 14 kDa subunit yes no 2 0.0018436 77.533 3 0.63074 0.8244 18.746 3 Median 0.63074 0.8244 18.746 3 0 Median NaN NaN NaN 0 0 Median 16652000 11240000 5412000 16652000 11240000 5412000 0 0 0 1110 546 1143 4276;4277;4278 6500;6501;6502 6502 3 ATILDLSCNK DLNEVPVKELAALPKATILDLSCNKLTTLP AALPKATILDLSCNKLTTLPSDFCGLTHLV K A T N K L 1 0 1 1 1 0 0 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 10 0 1133.5751 Q96AG4 Q96AG4 41 50 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2 0.00024371 125.82 1 0.7703 0.97412 NaN 1 Median 0.7703 0.97412 NaN 1 0 Median NaN NaN NaN 0 0 Median 16851000 7615400 9235900 16851000 7615400 9235900 0 0 0 1111 1681 1144 4279 6503 6503 1 ATISLSDSDLLR LLTDGDVHIRDDGRRATISLSDSDLLRLEG GRRATISLSDSDLLRLEGDSRTVRLLKELR R A T L R L 1 1 0 2 0 0 0 0 0 1 3 0 0 0 0 3 1 0 0 0 0 0 12 0 1289.6827 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 1088 1099 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.0013661 68.893 2 1 0.72053 1.0145 20.106 2 Median 0.67156 0.88009 NaN 1 0 Median 0.77307 1.1695 NaN 1 0 Median 25034000 13218000 11816000 7174400 4275200 2899200 17859000 8942400 8917100 1112 93 1145 4280;4281;4282 6504;6505;6506 6504 3 ATKPQPVNTSSVTVK ESSAATKKLSATIPKATKPQPVNTSSVTVK ATKPQPVNTSSVTVKSNRSSNMTATTKFVS K A T V K S 1 0 1 0 0 1 0 0 0 0 0 2 0 0 2 2 3 0 0 3 0 0 15 1 1555.857 B2RMQ4;Q8WWK9 B2RMQ4 214 228 CKAP2 Cytoskeleton-associated protein 2 yes no 2;3 2.8356E-07 126.5 3 2 1.1935 1.4698 28.251 5 Median 1.225 1.5058 4.7794 3 0 Median 0.57481 0.91679 3.9863 2 0 Median 76190000 38187000 38003000 44070000 18834000 25236000 32121000 19353000 12767000 1113 745 1146 4283;4284;4285;4286;4287 6507;6508;6509;6510;6511;6512 6507 6 ATLEVILRPK YGPAEVKVSKEIFNKATLEVILRPKIGLPG EIFNKATLEVILRPKIGLPGVAEKSRERLI K A T P K I 1 1 0 0 0 0 1 0 0 1 2 1 0 0 1 0 1 0 0 1 0 0 10 1 1138.7074 Q9NQT4;B2RC50;M0R102 Q9NQT4 74 83 EXOSC5 Exosome complex component RRP46 yes no 2;3 0.034024 54.982 3 0.5087 0.65734 14.313 2 Median 0.5087 0.65734 14.313 2 0 Median NaN NaN NaN 0 0 Median 18781000 11307000 7474300 18781000 11307000 7474300 0 0 0 1114 1753 1147 4288;4289;4290 6513;6514;6515 6515 3 ATLLQQR TNTEIVECILKRGQKATLLQQRREGEMKEI CILKRGQKATLLQQRREGEMKEIERPFETY K A T Q R R 1 1 0 0 0 2 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 7 0 828.48175 P46013 P46013 911 917 MKI67 Antigen KI-67 yes yes 2 0.0037972 126.68 5 2 0.93919 1.2923 17.554 6 Median 0.91172 1.2393 4.2304 4 0 Median 1.0656 1.7428 3.0658 2 0 Median 578620000 311210000 267410000 371680000 204690000 166990000 206940000 106520000 100410000 1115 1342 1148 4291;4292;4293;4294;4295;4296;4297 6516;6517;6518;6519;6520;6521;6522;6523;6524;6525;6526;6527 6516 12 ATLNAFLYR FLRKRATEKISEDLRATLNAFLYRTGQHSN ISEDLRATLNAFLYRTGQHSNKFMLVLASN R A T Y R T 2 1 1 0 0 0 0 0 0 0 2 0 0 1 0 0 1 0 1 0 0 0 9 0 1067.5764 Q9NVI7 Q9NVI7 479 487 ATAD3A ATPase family AAA domain-containing protein 3A no no 2 0.0018503 91.041 1 0.41757 0.56058 NaN 1 Median 0.41757 0.56058 NaN 1 0 Median NaN NaN NaN 0 0 Median 14402000 9262300 5140000 14402000 9262300 5140000 0 0 0 1116 1763 1149 4298 6528 6528 1 ATLQAALCLENFSSQVVER ______________________________ AALCLENFSSQVVERHNKPEVEVRSSKELL R A T E R H 3 1 1 0 1 2 2 0 0 0 3 0 0 1 0 2 1 0 0 2 0 0 19 0 2135.0681 F8WDD7;F8WCF6;A0A0A6YYG9;P59998;Q9H7Z5;H7C0A3;F8WE39;F8WDW3 F8WDD7 14 32 ARPC4;ARPC4-TTLL3 Actin-related protein 2/3 complex subunit 4 yes no 2 2.2782E-35 186.77 4 1.288 1.6924 22.441 3 Median 1.288 1.6924 22.441 3 0 Median NaN NaN NaN 0 0 Median 25679000 11019000 14659000 25679000 11019000 14659000 0 0 0 1117 407 1150 4299;4300;4301;4302 6529;6530;6531;6532;6533;6534;6535 6530 7 ATLQEILPEVLK QPRKALVDILSEVSKATLQEILPEVLKADL VSKATLQEILPEVLKADLNIILSSPEQLEL K A T L K A 1 0 0 0 0 1 2 0 0 1 3 1 0 0 1 0 1 0 0 1 0 0 12 0 1352.7915 Q9BQG0;I3L1L3;B4DZZ1 Q9BQG0 191 202 MYBBP1A Myb-binding protein 1A yes no 2 1.9666E-24 184.71 4 2 0.22772 0.28642 NaN 1 Median 0.22772 0.28642 NaN 1 0 Median NaN NaN NaN 0 0 Median 167170000 162880000 4293600 104680000 100380000 4293600 62493000 62493000 0 1118 1708 1151 4303;4304;4305;4306;4307;4308 6536;6537;6538;6539;6540;6541 6537 6 ATLSAEVYR RIWNNEDVNLDKVFKATLSAEVYRILSVQG LDKVFKATLSAEVYRILSVQGTEPLVLFKE K A T Y R I 2 1 0 0 0 0 1 0 0 0 1 0 0 0 0 1 1 0 1 1 0 0 9 0 1008.524 Q9H8H0;J3QLQ6 Q9H8H0 103 111 NOL11 Nucleolar protein 11 yes no 2 5.6483E-05 153.04 4 2 0.78033 1.0449 6.5448 6 Median 0.79566 1.0721 4.3998 4 0 Median 0.65177 0.98577 6.3684 2 0 Median 134600000 76418000 58182000 99963000 55196000 44767000 34636000 21222000 13414000 1119 1743 1152 4309;4310;4311;4312;4313;4314 6542;6543;6544;6545;6546;6547;6548;6549;6550;6551;6552 6542 11 ATLSSIR PATSYVRTTINKNARATLSSIRHMIRKNKY TTINKNARATLSSIRHMIRKNKYRPDLRMA R A T I R H 1 1 0 0 0 0 0 0 0 1 1 0 0 0 0 2 1 0 0 0 0 0 7 0 746.42865 P46779;H0YKD8;O60251 P46779 88 94 RPL28 60S ribosomal protein L28 yes no 2 6.1773E-05 154.11 4 2 0.69513 0.96855 9.0261 6 Median 0.7527 1.0312 10.335 4 0 Median 0.58964 0.96532 1.7639 2 0 Median 1079900000 627970000 451920000 856230000 490260000 365970000 223660000 137700000 85955000 1120 1346 1153 4315;4316;4317;4318;4319;4320 6553;6554;6555;6556;6557;6558;6559;6560;6561;6562;6563;6564 6559 12 ATNESEDEIPQLVPIGK EHGKKKRGRGKAQVKATNESEDEIPQLVPI NESEDEIPQLVPIGKKTPANEKVEIQKHAT K A T G K K 1 0 1 1 0 1 3 1 0 2 1 1 0 0 2 1 1 0 0 1 0 0 17 0 1838.9262 O76021;Q32Q62;J3QSV6;A0PJ61 O76021 357 373 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 1.1638E-34 191.19 5 2 0.65531 0.86616 20.939 6 Median 0.66249 0.86797 1.3123 4 0 Median 0.37056 0.58244 3.0694 2 0 Median 2030300000 1357900000 672390000 938490000 563940000 374550000 1091800000 793960000 297850000 1121 1210 1154 4321;4322;4323;4324;4325;4326;4327 6565;6566;6567;6568;6569;6570;6571;6572;6573;6574;6575;6576;6577;6578;6579 6568 15 ATNFLAHEK ______________________________ ______________________________ M A T E K I 2 0 1 0 0 0 1 0 1 0 1 1 0 1 0 0 1 0 0 0 0 0 9 0 1029.5243 E9PK01;P29692;E9PMW7;E9PPR1;E9PL12;E9PQ49;E9PI39;E9PN91;E9PL71;E9PQZ1;E9PK06;E9PNW6;E9PKK3;E9PK72;E9PJD0 E9PK01 2 10 EEF1D Elongation factor 1-delta yes no 2 0.0073645 99.013 2 0.55016 0.69275 NaN 1 Median 0.55016 0.69275 NaN 1 0 Median NaN NaN NaN 0 0 Median 3583400 2316400 1267000 3583400 2316400 1267000 0 0 0 1122 1035 1155 4328;4329 6580;6581;6582 6580 3 ATNIEVLSNTFQFTNEAR VRFNISTDRRDKLERATNIEVLSNTFQFTN IEVLSNTFQFTNEAREMGVIAAMRDGFGFI R A T A R E 2 1 3 0 0 1 2 0 0 1 1 0 0 2 0 1 3 0 0 1 0 0 18 0 2054.0069 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0 Q9GZV0 300 317 CSDE1;UNR Cold shock domain-containing protein E1 yes no 2 2.514E-110 259.27 4 0.3616 0.49008 16.721 2 Median 0.3616 0.49008 16.721 2 0 Median NaN NaN NaN 0 0 Median 33107000 26807000 6299700 33107000 26807000 6299700 0 0 0 1123 31 1156 4330;4331;4332;4333 6583;6584;6585;6586;6587;6588 6585 6 ATQAHSLSYAGCNFLR ______________________________ TQAHSLSYAGCNFLRQRLVLSTLSGRPVKI M A T L R Q 3 1 1 0 1 1 0 1 1 0 2 0 0 1 0 2 1 0 1 0 0 0 16 0 1794.8472 Q9Y2P8;Q5VYW8 Q9Y2P8 2 17 RCL1 RNA 3-terminal phosphate cyclase-like protein yes no 2 3.3236E-18 157.5 3 1 1.0487 1.4228 36.783 3 Median 1.0931 1.4675 4.3788 2 0 Median 0.54486 0.77783 NaN 1 0 Median 57214000 20820000 36395000 44418000 12222000 32196000 12797000 8597800 4198800 1124 1806 1157 4334;4335;4336;4337 6589;6590;6591;6592;6593 6591 5 ATQALVLAPTR TFAISILQQIELDLKATQALVLAPTRELAQ LDLKATQALVLAPTRELAQQIQKVVMALGD K A T T R E 3 1 0 0 0 1 0 0 0 0 2 0 0 0 1 0 2 0 0 1 0 0 11 0 1139.6663 A8K7F6;P60842;A8K088;J3KT12;J3KTB5;Q59F68;J3QS69;J3QR64;J3QL43;J3QLN6;J3QKZ9;B4E047;J3KS25;B4E102 A8K7F6 100 110 EIF4A1 Eukaryotic initiation factor 4A-I yes no 2 1.2468E-18 194.12 4 1 0.33115 0.45428 103.68 5 Median 0.31771 0.43573 8.6883 4 0 Median 2.7353 4.2943 NaN 1 0 Median 195140000 138380000 56756000 170960000 131810000 39151000 24177000 6572600 17605000 1125 634 1158 4338;4339;4340;4341;4342 6594;6595;6596;6597;6598;6599;6600;6601;6602;6603;6604 6595 11 ATQEWLEK QLQDALNELTEEHSKATQEWLEKQAQLEKE LTEEHSKATQEWLEKQAQLEKELSAALQDK K A T E K Q 1 0 0 0 0 1 2 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 8 0 1003.4975 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 351 358 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.014228 66.073 1 0.24536 0.34997 NaN 1 Median NaN NaN NaN 0 0 Median 0.24536 0.34997 NaN 1 0 Median 4704600 3787600 916920 0 0 0 4704600 3787600 916920 1126 148;1499;590 1159 4343 6605 6605 1 ATQQQHDFTLTQTADGR EGSLSARWPVAGQIRATQQQHDFTLTQTAD QQQHDFTLTQTADGRSSFDWLTGSSTDPLV R A T G R S 2 1 0 2 0 4 0 1 1 0 1 0 0 1 0 0 4 0 0 0 0 0 17 0 1916.8977 P78527 P78527 2637 2653 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 6.0946E-16 153.92 5 1 0.70015 1.0513 NaN 1 Median NaN NaN NaN 0 0 Median 0.70015 1.0513 NaN 1 0 Median 44163000 12805000 31358000 28404000 3893700 24510000 15759000 8911600 6847700 1127 1427 1160 4344;4345;4346;4347;4348;4349 6606;6607;6608;6609;6610;6611 6606 6 ATQTLQANESASDILILR QEEGRERSRRAAAVKATQTLQANESASDIL TLQANESASDILILRSHESNAPGSAGGQAS K A T L R S 3 1 1 1 0 2 1 0 0 2 3 0 0 0 0 2 2 0 0 0 0 0 18 0 1943.0324 A0A1C7CYX1;A0A0A0MSU2;A0PJD3;A0A024R689;Q6PJG2 A0A1C7CYX1 970 987 ELMSAN1;C14orf43 ELM2 and SANT domain-containing protein 1 yes no 2 3.4858E-73 250.81 3 0.56429 0.78142 13.081 2 Median 0.56429 0.78142 13.081 2 0 Median NaN NaN NaN 0 0 Median 6740300 4493300 2247000 6740300 4493300 2247000 0 0 0 1128 523 1161 4350;4351;4352 6612;6613;6614;6615 6614 4 ATRDELPYTFAAPESYEELR TPGKGLISGKERAGKATRDELPYTFAAPES LPYTFAAPESYEELRSLLLGRSMEEQLLVV K A T L R S 3 2 0 1 0 0 4 0 0 0 2 0 0 1 2 1 2 0 2 0 0 0 20 1 2357.1176 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 417 436 NOP14 Nucleolar protein 14 yes no 3 1.2042E-09 109.42 3 2 0.90598 1.2504 7.9933 5 Median 1.0016 1.3479 5.6085 3 0 Median 0.75446 1.1746 2.7889 2 0 Median 195490000 101950000 93539000 113230000 57635000 55598000 82256000 44315000 37941000 1129 652 1162 4353;4354;4355;4356;4357 6616;6617;6618;6619;6620;6621;6622;6623;6624 6619 9 ATSELILLPVTGLECVGDR SRIDMDALEDYVWPRATSELILLPVTGLEC LILLPVTGLECVGDRLLAGEGPDVLVYSLD R A T D R L 1 1 0 1 1 0 2 2 0 1 4 0 0 0 1 1 2 0 0 2 0 0 19 0 2042.0718 A0A087X295;Q9NNW5;B3KRR8;B4DK45;Q9NW86;E9PBK6;B4DLP3;E5RFX3;F8WE36;C9K020 A0A087X295 42 60 WDR6 WD repeat-containing protein 6 yes no 2 0.0051347 42.809 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15970000 15970000 0 15970000 15970000 0 0 0 0 1130 376 1163 4358;4359 6625;6626 6625 2 ATSEVPGSQASPNPVPGDGLHR LEMGIKAARPEIADRATSEVPGSQASPNPV SQASPNPVPGDGLHRAGFDAFMTGYVMAYV R A T H R A 2 1 1 1 0 1 1 3 1 0 1 0 0 0 4 3 1 0 0 2 0 0 22 0 2172.056 B3KSC7;Q96GM8 B3KSC7 142 163 TOE1 Target of EGR1 protein 1 yes no 3 0.035904 39.288 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3176700 3176700 0 3176700 3176700 0 0 0 0 1131 774 1164 4360;4361 6627;6628 6628 2 ATSFLLALEPELEAR AEVVLAHLGGGSTSRATSFLLALEPELEAR ATSFLLALEPELEARLAHLGVQVKGEDEEE R A T A R L 3 1 0 0 0 0 3 0 0 0 4 0 0 1 1 1 1 0 0 0 0 0 15 0 1658.8879 Q96HX3;Q6IBR0;Q53EP4;P04843;F8WF32 Q96HX3 27 41 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 2.0096E-22 137.89 3 0.46502 0.64253 3.5416 3 Plateau 0.46502 0.64253 3.5416 3 0 Plateau NaN NaN NaN 0 0 Median 26914000 17971000 8942800 26914000 17971000 8942800 0 0 0 1132 1233 1165 4362;4363;4364 6629;6630;6631;6632;6633;6634 6633 6 ATSGAATPVIASTK HMPMLRNNRDKDLIRATSGAATPVIASTKS RATSGAATPVIASTKSNLALTSPGRPPMGF R A T T K S 4 0 0 0 0 0 0 1 0 1 0 1 0 0 1 2 3 0 0 1 0 0 14 0 1273.6878 B4E3J2;F5H586;Q5H9S4;H0Y6W5;D3DRJ1;B4DR27;B1APH0;Q6ZN30 B4E3J2 339 352 BNC2;DKFZp686A01127;hCG_27250 Zinc finger protein basonuclin-2 yes no 2 0.0019913 49.423 2 2.1942 2.9047 NaN 1 Median NaN NaN NaN 0 0 Median 2.1942 2.9047 NaN 1 0 Median 4572000 867900 3704100 0 0 0 4572000 867900 3704100 1133 677 1166 4365;4366 6635;6636 6636 2 ATSILEFYR ATLSVGGKTVSRFRKATSILEFYRELGLPP VSRFRKATSILEFYRELGLPPKQTVKIFNI K A T Y R E 1 1 0 0 0 0 1 0 0 1 1 0 0 1 0 1 1 0 1 0 0 0 9 0 1098.571 D6RC14;B4DW56;H0Y9G6;E7ETU7;B4DKM0;P09001;E9PF06 D6RC14 53 61 MRPL3 39S ribosomal protein L3, mitochondrial yes no 2 0.040351 77.318 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1415500 1415500 0 1415500 1415500 0 0 0 0 1134 821 1167 4367 6637 6637 1 ATTLPTDFNYNVDTLVQLHLK ATILTKSTLENQNWRATTLPTDFNYNVDTL DFNYNVDTLVQLHLKPGTRLLKMAQGHRVE R A T L K P 1 0 2 2 0 1 0 0 1 0 4 1 0 1 1 0 4 0 1 2 0 0 21 0 2402.2482 Q15003;B4DRG7;E9PHA2;A8K4T8;C9J470 Q15003 505 525 NCAPH Condensin complex subunit 2 yes no 3 1.0032E-19 136.33 4 2 0.72845 0.95829 17.171 6 Median 0.74551 0.95829 4.4201 4 0 Median 0.56115 0.88945 36.953 2 0 Median 575180000 338490000 236680000 337090000 191750000 145340000 238080000 146750000 91336000 1135 1500 1168 4368;4369;4370;4371;4372;4373 6638;6639;6640;6641;6642;6643;6644;6645;6646;6647;6648 6639 11 ATTLPTDFNYNVDTLVQLHLKPGTR ATILTKSTLENQNWRATTLPTDFNYNVDTL NVDTLVQLHLKPGTRLLKMAQGHRVETEHY R A T T R L 1 1 2 2 0 1 0 1 1 0 4 1 0 1 2 0 5 0 1 2 0 0 25 1 2813.4712 Q15003;B4DRG7;E9PHA2;A8K4T8;C9J470 Q15003 505 529 NCAPH Condensin complex subunit 2 yes no 3;4 8.5237E-47 133.1 6 4 0.66053 0.88959 6.9468 9 Median 0.68486 0.90385 7.0118 6 0 Median 0.49834 0.82824 6.7089 3 0 Median 1036700000 588060000 448660000 657770000 383160000 274600000 378950000 204890000 174060000 1136 1500 1169 4374;4375;4376;4377;4378;4379;4380;4381;4382;4383 6649;6650;6651;6652;6653;6654;6655;6656;6657;6658;6659;6660;6661;6662;6663;6664;6665;6666 6656 18 ATTTYDFDCDNLELK MKNDARENQTDTAQRATTTYDFDCDNLELK ATTTYDFDCDNLELKSNKHSESPGATELNM R A T L K S 1 0 1 3 1 0 1 0 0 0 2 1 0 1 0 0 3 0 1 0 0 0 15 0 1804.7825 Q6P0N0 Q6P0N0 520 534 MIS18BP1 Mis18-binding protein 1 yes yes 2 1.8589E-06 122.55 4 0.69518 0.86484 23.609 3 Median 0.69518 0.86484 23.609 3 0 Median NaN NaN NaN 0 0 Median 20138000 12675000 7462800 20138000 12675000 7462800 0 0 0 1137 1588 1170 4384;4385;4386;4387 6667;6668;6669;6670;6671;6672 6667 5 ATVFENAAICDEIAR EKYRLKYLRLRKAAKATVFENAAICDEIAR ATVFENAAICDEIARLEEKFLKAKEERRSS K A T A R L 4 1 1 1 1 0 2 0 0 2 0 0 0 1 0 0 1 0 0 1 0 0 15 0 1678.7985 E9PI10;Q6GPH2;Q05BL0;F8W6N5;Q3YBR2 E9PI10 47 61 TBRG1 Transforming growth factor beta regulator 1 yes no 2 0.0007316 100.93 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1138 1032 1171 4388;4389 6673;6674 6673 2 ATVLQTVFEDYVHSSER AQKSHAVGPQEIRERATVLQTVFEDYVHSS VLQTVFEDYVHSSERRVSWAKKALQSFIQA R A T E R R 1 1 0 1 0 1 2 0 1 0 1 0 0 1 0 2 2 0 1 3 0 0 17 0 1979.9589 B4DYZ1;F8WAJ0;Q9H8H2 B4DYZ1 561 577 DDX31 Probable ATP-dependent RNA helicase DDX31 yes no 3 0.00016075 87.138 2 0.99842 1.3901 45.613 2 Median 0.99842 1.3901 45.613 2 0 Median NaN NaN NaN 0 0 Median 3902400 2175600 1726800 3902400 2175600 1726800 0 0 0 1139 875 1172 4390;4391 6675;6676;6677;6678;6679 6678 5 ATVLTTER LVGMTPEIIQKLQDKATVLTTERKKRGKTV IQKLQDKATVLTTERKKRGKTVPEELVKPE K A T E R K 1 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 3 0 0 1 0 0 8 0 889.4869 Q9UMS4;F5GY56;H0YGF3;F5H2I0 Q9UMS4 180 187 PRPF19 Pre-mRNA-processing factor 19 yes no 2 0.012076 69.198 1 1 0.9635 1.2467 26.584 2 Median 0.78402 1.0331 NaN 1 0 Median 1.1841 1.5046 NaN 1 0 Median 11526000 5613600 5912300 6762900 3369600 3393300 4762900 2244000 2519000 1140 1795 1173 4392;4393 6680;6681 6680 2 ATVSAPFGK ELVYTDSEARDVFEKATVSAPFGKFQGKTV RDVFEKATVSAPFGKFQGKTVTIWEIINSE K A T G K F 2 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 0 0 9 0 876.47052 Q15149;D3DWL0 Q15149 3045 3053 PLEC;PLEC1 Plectin yes no 2 0.010009 63.565 1 0.71392 0.87761 NaN 1 Median 0.71392 0.87761 NaN 1 0 Median NaN NaN NaN 0 0 Median 34514000 18685000 15829000 34514000 18685000 15829000 0 0 0 1141 1507 1174 4394 6682;6683 6683 2 AVAFHPR TKPYRMLRHHKKALRAVAFHPRYPLFASGS RHHKKALRAVAFHPRYPLFASGSDDGSVIV R A V P R Y 2 1 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 1 0 0 7 0 796.43441 B2RDN4;Q14137;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 B2RDN4 668 674 BOP1 Ribosome biogenesis protein BOP1 yes no 2 0.0045112 137.2 3 2 0.74946 1.0122 10.761 5 Median 0.87025 1.1832 9.0811 3 0 Median 0.64594 0.96642 4.8977 2 0 Median 123140000 71052000 52089000 86451000 48540000 37911000 36690000 22512000 14179000 1142 738 1175 4395;4396;4397;4398;4399 6684;6685;6686;6687;6688;6689 6684 6 AVAHHTDCTFIR LLYGPPGTGKTLLARAVAHHTDCTFIRVSG LARAVAHHTDCTFIRVSGSELVQKFIGEGA R A V I R V 2 1 0 1 1 0 0 0 2 1 0 0 0 1 0 0 2 0 0 1 0 0 12 0 1426.6776 Q59GS3;A0A140VJS3;P62195;J3QLH6;J3KRP2;J3QSA9;J3QRW1;J3QQM1;J3QRR3 Q59GS3 198 209 PSMC5 26S protease regulatory subunit 8 yes no 3 0.0043245 36.447 1 0.42454 0.56174 NaN 1 Median 0.42454 0.56174 NaN 1 0 Median NaN NaN NaN 0 0 Median 9400700 4595200 4805500 9400700 4595200 4805500 0 0 0 1143 503 1176 4400 6690;6691 6691 2 AVAILCNHQR ENIPAKILSYNRANRAVAILCNHQRAPPKT NRANRAVAILCNHQRAPPKTFEKSMMNLQT R A V Q R A 2 1 1 0 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1180.6135 P11387;B9EG90;Q9BVT2 P11387 625 634 TOP1 DNA topoisomerase 1 yes no 2;3 6.0473E-46 208.59 7 4 0.77119 1.1026 8.5762 11 Median 0.77119 1.0574 4.7784 7 0 Median 0.79768 1.299 7.5614 4 0 Linear 1635000000 908910000 726080000 1343600000 741500000 602140000 291350000 167420000 123940000 1144 1255 1177 4401;4402;4403;4404;4405;4406;4407;4408;4409;4410;4411 6692;6693;6694;6695;6696;6697;6698;6699;6700;6701;6702;6703;6704;6705;6706;6707;6708;6709;6710 6708 19 AVALYFIDK YREDWKSKEMKVRQRAVALYFIDKLALRAG MKVRQRAVALYFIDKLALRAGNEKEEGETA R A V D K L 2 0 0 1 0 0 0 0 0 1 1 1 0 1 0 0 0 0 1 1 0 0 9 0 1038.575 P11387;B9EG90;B7Z9E8;B4DYD2;E5KMK7;E5KMK6;E5KMK5;Q969P6;E5RIC7;B4E061;D3DWJ7 P11387 476 484 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 1;2 0.0036387 119.27 6 2 0.88582 1.2893 40.309 4 Median 0.65729 0.85706 42.108 2 0 Median 0.94526 1.4924 5.0507 2 0 Median 854510000 608400000 246100000 509520000 420340000 89178000 344990000 188060000 156930000 1145 1255 1178 4412;4413;4414;4415;4416;4417;4418;4419 6711;6712;6713;6714;6715;6716;6717;6718;6719;6720;6721;6722 6714 12 AVANEVGAYVSVINGPEIISK LLYGPPGTGKTMIARAVANEVGAYVSVING GAYVSVINGPEIISKFYGETEAKLRQIFAE R A V S K F 3 0 2 0 0 0 2 2 0 3 0 1 0 0 1 2 0 0 1 4 0 0 21 0 2129.1368 Q8NB90 Q8NB90 406 426 SPATA5 Spermatogenesis-associated protein 5 yes yes 2 2.2057E-16 147.24 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1146 1648 1179 4420 6723 6723 1 AVANQTSATFLR ILYGPPGTGKTLLAKAVANQTSATFLRVVG LAKAVANQTSATFLRVVGSELIQKYLGDGP K A V L R V 3 1 1 0 0 1 0 0 0 0 1 0 0 1 0 1 2 0 0 1 0 0 12 0 1277.6728 Q53XL8;Q53HB3;P62191 Q53XL8 238 249 PSMC1 26S protease regulatory subunit 4 yes no 2 6.1376E-12 125.97 2 2 0.37906 0.50026 147.26 3 Median 0.35481 0.48138 5.4425 2 0 Median 4.5739 6.1636 NaN 1 0 Median 20540000 8954900 11585000 11086000 7664600 3421800 9453800 1290300 8163400 1147 1398 1180 4421;4422;4423;4424 6724;6725;6726;6727;6728 6726 5 AVAPPTPASK TMPTDTSKSEKLASRAVAPPTPASKRDCVK KLASRAVAPPTPASKRDCVKGSATPSGQES R A V S K R 3 0 0 0 0 0 0 0 0 0 0 1 0 0 3 1 1 0 0 1 0 0 10 0 937.52328 Q14781 Q14781 418 427 CBX2 Chromobox protein homolog 2 yes yes 2 0.0024053 70.919 1 0.96801 1.2094 NaN 1 Median 0.96801 1.2094 NaN 1 0 Median NaN NaN NaN 0 0 Median 2326500 1110500 1216000 2326500 1110500 1216000 0 0 0 1148 1496 1181 4425 6729;6730 6730 2 AVATEANNSTFFSVSSSDLMSK LLFGPPGTGKSYLAKAVATEANNSTFFSVS NSTFFSVSSSDLMSKWLGESEKLVKNLFEL K A V S K W 3 0 2 1 0 0 1 0 0 0 1 1 1 2 0 6 2 0 0 2 0 0 22 0 2292.058 I3L4J1;A0A024R705;Q9UN37;Q9UF30 I3L4J1 203 224 VPS4A;DKFZp434E0418 Vacuolar protein sorting-associated protein 4A yes no 3 0.043676 7.4461 1 0.45361 0.57573 NaN 1 Median 0.45361 0.57573 NaN 1 0 Median NaN NaN NaN 0 0 Median 6745300 4197900 2547400 6745300 4197900 2547400 0 0 0 1149 167 1182 4426 6731 6731 1 AVAVDSTGTYMATSGLDHQLK KEPLAKILCHRGGVRAVAVDSTGTYMATSG TGTYMATSGLDHQLKIFDLRGTYQPLSTRT R A V L K I 3 0 0 2 0 1 0 2 1 0 2 1 1 0 0 2 3 0 1 2 0 0 21 0 2164.047 B0UZZ8;B4DNI0;O15213;B4DP15;A8K9A1;A8K806;A0A140T9L0;A0A0G2JJL1;H0Y6G3 B0UZZ8 364 384 C6orf11;WDR46 WD repeat-containing protein 46 yes no 3 5.7732E-12 77.08 1 2 0.56548 0.88694 3.7109 3 Plateau 0.64346 0.8351 NaN 1 0 Median 0.56383 0.88694 1.8316 2 0 Median 63164000 38102000 25062000 1779900 1041600 738340 61384000 37060000 24324000 1150 668 1183 4427;4428;4429 6732;6733;6734;6735;6736 6736 233 5 AVDALLTHCK APTARKQLDKEQVRKAVDALLTHCKSRKNN EQVRKAVDALLTHCKSRKNNYGLLLNENES K A V C K S 2 0 0 1 1 0 0 0 1 0 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1126.5805 O76021;Q32Q62;J3QSV6;A0PJ61;A0PJ87;I3L3U9;I3L3C4;I3L1A3 O76021 39 48 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2;3 8.0793E-06 112.01 8 2 0.70349 0.9159 26.342 10 Plateau 0.69889 0.90674 8.1874 8 0 Median 0.30778 0.48477 8.0517 2 0 Median 837810000 505480000 332330000 776200000 458510000 317690000 61614000 46978000 14636000 1151 1210 1184 4430;4431;4432;4433;4434;4435;4436;4437;4438;4439 6737;6738;6739;6740;6741;6742;6743;6744;6745;6746;6747;6748;6749;6750;6751;6752 6745 16 AVDEAADALLK AQWRTVEGALKERRKAVDEAADALLKAKEE ERRKAVDEAADALLKAKEELEKMKSVIENA K A V L K A 4 0 0 2 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 11 0 1114.587 B4DS66;C9J406;H7C463;Q16891;B9A067;B4DQY2;B4DKR1;B4DT20;Q05DN3;B4E2B5 Q16891 287 297 IMMT MICOS complex subunit MIC60 no no 2 0.0063169 53.751 1 1 0.47685 0.60834 NaN 1 Median 0.47685 0.60834 NaN 1 0 Median NaN NaN NaN 0 0 Median 19020000 9333000 9687200 13620000 9333000 4286600 5400600 0 5400600 1152 1524;854 1185 4440;4441 6753;6754 6753 2 AVDFAER FRAHVKHRKGAARLRAVDFAERHGYIKGIV RKGAARLRAVDFAERHGYIKGIVKDIIHDP R A V E R H 2 1 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 7 0 806.39227 P62917;B4DVG7;E9PKZ0;E9PKU4;G3V1A1;E9PP36 P62917 31 37 RPL8 60S ribosomal protein L8 yes no 2 0.0074439 121.29 4 1 0.72569 0.99593 14.48 5 Median 0.73898 1.0199 5.4537 4 0 Median 0.4588 0.74271 NaN 1 0 Median 1049600000 605130000 444520000 930960000 523480000 407480000 118690000 81648000 37045000 1153 1417 1186 4442;4443;4444;4445;4446 6755;6756;6757;6758;6759;6760;6761;6762 6755 8 AVDIPHMDIEALK SVCVLGDQQHCDEAKAVDIPHMDIEALKKL AKAVDIPHMDIEALKKLNKNKKLVKKLAKK K A V L K K 2 0 0 2 0 0 1 0 1 2 1 1 1 0 1 0 0 0 0 1 0 0 13 0 1450.749 P62906;Q1JQ76 P62906 79 91 RPL10A 60S ribosomal protein L10a;Ribosomal protein yes no 3 0.00058535 96.866 3 1 0.76183 1.0368 8.4446 4 Median 0.79094 0.99459 8.7752 3 0 Median 0.7338 1.0843 NaN 1 0 Median 129900000 72298000 57606000 123310000 68481000 54833000 6590700 3817400 2773300 1154 1415 1187 4447;4448;4449;4450 6763;6764;6765;6766;6767 6764 5 AVDIPHMDIEALKK SVCVLGDQQHCDEAKAVDIPHMDIEALKKL KAVDIPHMDIEALKKLNKNKKLVKKLAKKY K A V K K L 2 0 0 2 0 0 1 0 1 2 1 2 1 0 1 0 0 0 0 1 0 0 14 1 1578.844 P62906;Q1JQ76 P62906 79 92 RPL10A 60S ribosomal protein L10a;Ribosomal protein yes no 3;4 0.0083736 58.21 4 1 0.76162 0.93989 8.5156 5 Median 0.76386 0.93431 4.6111 4 0 Median 0.75389 1.1111 NaN 1 0 Median 58543000 31189000 27353000 54846000 29067000 25779000 3697000 2122700 1574300 1155 1415 1188 4451;4452;4453;4454;4455 6768;6769;6770;6771;6772;6773 6769 6 AVDITTPK DTDHEEKASNEDVTKAVDITTPKAARRGRK SNEDVTKAVDITTPKAARRGRKRKAEKQVE K A V P K A 1 0 0 1 0 0 0 0 0 1 0 1 0 0 1 0 2 0 0 1 0 0 8 0 843.47018 O75475;Q05CM9 O75475 136 143 PSIP1 PC4 and SFRS1-interacting protein yes no 2 0.025449 53.968 1 0.91044 1.1359 NaN 1 Median 0.91044 1.1359 NaN 1 0 Median NaN NaN NaN 0 0 Median 42503000 22355000 20148000 42503000 22355000 20148000 0 0 0 1156 1201 1189 4456 6774;6775 6775 2 AVDPEDDFQR IGGSEAPAPQNKDQKAVDPEDDFQREMSFY NKDQKAVDPEDDFQREMSFYRQAQAAVLAV K A V Q R E 1 1 0 3 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 10 0 1190.5204 Q6IB29;H7C2Q8;Q99848;B4DHA6 Q6IB29 95 104 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 1.1069E-06 121.05 5 2 0.94546 1.312 7.2806 5 Median 0.98546 1.3409 2.3119 3 0 Median 0.72079 1.1801 1.6833 2 0 Median 889020000 447300000 441720000 669630000 322770000 346860000 219390000 124530000 94869000 1157 1123 1190 4457;4458;4459;4460;4461;4462;4463 6776;6777;6778;6779;6780;6781;6782;6783;6784;6785 6782 10 AVDPEDDFQREMSFYR IGGSEAPAPQNKDQKAVDPEDDFQREMSFY VDPEDDFQREMSFYRQAQAAVLAVLPRLHQ K A V Y R Q 1 2 0 3 0 1 2 0 0 0 0 0 1 2 1 1 0 0 1 1 0 0 16 1 2003.8683 Q6IB29;H7C2Q8;Q99848 Q6IB29 95 110 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 3 0.0012815 40.237 1 0.61186 0.98243 NaN 1 Median NaN NaN NaN 0 0 Median 0.61186 0.98243 NaN 1 0 Median 46325000 26360000 19965000 0 0 0 46325000 26360000 19965000 1158 1123 1191 4464 6786 6786 399 1 AVDPSSVALVTLGSSK HLSAKITIAAYLPLKAVDPSSVALVTLGSS VDPSSVALVTLGSSKEMLFEGGPRPWILEP K A V S K E 2 0 0 1 0 0 0 1 0 0 2 1 0 0 1 4 1 0 0 3 0 0 16 0 1529.8301 Q8TEM1 Q8TEM1 645 660 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 3.5364E-08 115.57 2 0.85985 1.0775 NaN 1 Median 0.85985 1.0775 NaN 1 0 Median NaN NaN NaN 0 0 Median 7893400 6426600 1466700 7893400 6426600 1466700 0 0 0 1159 1661 1192 4465;4466 6787;6788 6787 2 AVDPTSGQLYGLAR LGRVKGRTGLRVVVKAVDPTSGQLYGLARE KAVDPTSGQLYGLARELSDEIQVQVFEKLQ K A V A R E 2 1 0 1 0 1 0 2 0 0 2 0 0 0 1 1 1 0 1 1 0 0 14 0 1446.7467 Q8TEM1 Q8TEM1 1259 1272 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.0050408 79.201 1 0.61328 0.86232 NaN 1 Median 0.61328 0.86232 NaN 1 0 Median NaN NaN NaN 0 0 Median 3624700 2237800 1386800 3624700 2237800 1386800 0 0 0 1160 1661 1193 4467 6789 6789 1 AVDQHNAEAQDIFGK TKDVSGLHSKLDRKKAVDQHNAEAQDIFGK AVDQHNAEAQDIFGKNLNSLFNNMEELIKD K A V G K N 3 0 1 2 0 2 1 1 1 1 0 1 0 1 0 0 0 0 0 1 0 0 15 0 1641.7747 P52732;B2RAM6 P52732 522 536 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 2;3 0.009372 92.792 2 0.424 0.53598 NaN 1 Median 0.424 0.53598 NaN 1 0 Median NaN NaN NaN 0 0 Median 14177000 9836300 4340600 14177000 9836300 4340600 0 0 0 1161 1366 1194 4468;4469 6790;6791 6790 2 AVDSLVPIGR IPRISVREPMQTGIKAVDSLVPIGRG____ QTGIKAVDSLVPIGRG______________ K A V G R G 1 1 0 1 0 0 0 1 0 1 1 0 0 0 1 1 0 0 0 2 0 0 10 0 1025.5869 K7ERX7;V9HW26;P25705;B4DGW3;K7EK77;K7ENJ4 K7ERX7 195 204 ATP5A1;HEL-S-123m ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 2 0.0068649 57.59 1 8.6906 11.54 NaN 1 Median NaN NaN NaN 0 0 Median 8.6906 11.54 NaN 1 0 Median 2567400 329410 2238000 0 0 0 2567400 329410 2238000 1162 1154 1195 4470 6792 6792 1 AVDSQILPK KEKYEITEQRKIDQKAVDSQILPKIKAIPQ RKIDQKAVDSQILPKIKAIPQLQGYLRSVF K A V P K I 1 0 0 1 0 1 0 0 0 1 1 1 0 0 1 1 0 0 0 1 0 0 9 0 969.5495 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3 Q8TBK5 252 260 RPL6 60S ribosomal protein L6 yes no 1;2 4.1704E-05 132.76 5 2 0.7454 0.98201 2.0076 6 Median 0.75795 0.98201 1.5946 4 0 Median 0.6123 0.96836 2.7177 2 0 Median 998580000 573970000 424610000 752840000 423780000 329060000 245740000 150190000 95554000 1163 277 1196 4471;4472;4473;4474;4475;4476;4477 6793;6794;6795;6796;6797;6798;6799;6800;6801;6802 6797 10 AVDVGAFLR SVQRPGLARRPPARRAVDVGAFLRDLRDTS RPPARRAVDVGAFLRDLRDTSLAPPNIVLE R A V L R D 2 1 0 1 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 2 0 0 9 0 946.52362 H3BUW2;H3BTR4;B3KPB2;Q96BT3;B4DMP9;A8K662 H3BUW2 158 166 CENPT Centromere protein T yes no 2 0.018831 65.038 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1820300 1820300 0 0 0 0 1820300 1820300 0 1164 764 1197 4478 6803 6803 1 AVDVLAK PVPSDIEISRGQTPKAVDVLAKEIGLLADE ISRGQTPKAVDVLAKEIGLLADEIEIYGKS K A V A K E 2 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 7 0 714.42759 A0A087WVM4;B7ZM99;Q6UB35;B2RD24 A0A087WVM4 308 314 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 2 0.033087 60.358 1 0.33632 0.41512 NaN 1 Median 0.33632 0.41512 NaN 1 0 Median NaN NaN NaN 0 0 Median 36775000 28456000 8319200 36775000 28456000 8319200 0 0 0 1165 348 1198 4479 6804 6804 1 AVEEGLTYK SSASGPAQSVAKMFRAVEEGLTYKFHAAWS VAKMFRAVEEGLTYKFHAAWSSVLQLLCVF R A V Y K F 1 0 0 0 0 0 2 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 9 0 1008.5128 B3KMR5;Q5JTH9;B3KY97 B3KMR5 474 482 RRP12 RRP12-like protein yes no 2 0.019702 52.716 1 0.92097 1.1671 NaN 1 Median 0.92097 1.1671 NaN 1 0 Median NaN NaN NaN 0 0 Median 6136900 3580600 2556300 6136900 3580600 2556300 0 0 0 1166 756 1199 4480 6805 6805 1 AVEHLDDLPGALSELSDLHAHK QVKGHGAKVAAALTKAVEHLDDLPGALSEL LPGALSELSDLHAHKLRVDPVNFKLLSHSL K A V H K L 3 0 0 3 0 0 2 1 3 0 5 1 0 0 1 2 0 0 0 1 0 0 22 0 2366.1866 CON__P01966 CON__P01966 70 91 yes yes 4 0.0048535 49.592 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57513000 57513000 0 49682000 49682000 0 7830900 7830900 0 + 1167 948 1200 4481;4482;4483 6806;6807;6808 6807 3 AVEIVTSTSAAK KVSASTLKRDADASKAVEIVTSTSAAKTGQ ASKAVEIVTSTSAAKTGQAKASVAKVNKST K A V A K T 3 0 0 0 0 0 1 0 0 1 0 1 0 0 0 2 2 0 0 2 0 0 12 0 1175.6398 Q14966;D6W5H1;A8K583;B4E187 Q14966 783 794 ZNF638 Zinc finger protein 638 yes no 2 0.009506 43.282 1 0.63984 0.77911 NaN 1 Median 0.63984 0.77911 NaN 1 0 Median NaN NaN NaN 0 0 Median 3424300 1740000 1684300 3424300 1740000 1684300 0 0 0 1168 1498 1201 4484 6809;6810 6810 2 AVELASLQNAK RRASQEANLLTLAQKAVELASLQNAKDGSG LAQKAVELASLQNAKDGSGSEEKRKSVLAS K A V A K D 3 0 1 0 0 1 1 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 11 0 1142.6295 A0A1C7CYX1;A0A0A0MSU2;A0PJD3;A0A024R689;Q6PJG2;H7C1L3 A0A1C7CYX1 473 483 ELMSAN1;C14orf43 ELM2 and SANT domain-containing protein 1 yes no 2 0.013104 101.9 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1058700 1058700 0 1058700 1058700 0 0 0 0 1169 523 1202 4485 6811 6811 1 AVELGDELQIDAIDDQK FPELPKSALFSESQKAVELGDELQIDAIDD ELGDELQIDAIDDQKCDILVQEELLASPKK K A V Q K C 2 0 0 4 0 2 2 1 0 2 2 1 0 0 0 0 0 0 0 1 0 0 17 0 1870.916 Q96JM3 Q96JM3 575 591 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 2 0.0045935 88.282 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 508800 0 508800 508800 0 508800 0 0 0 1170 1690 1203 4486 6812 6812 1 AVESGQLVSVHEK MVLDKPSPKTIAFVKAVESGQLVSVHEKES VKAVESGQLVSVHEKESIKHLKEEQGLVKN K A V E K E 1 0 0 0 0 1 2 1 1 0 1 1 0 0 0 2 0 0 0 3 0 0 13 0 1381.7201 Q9BRU9 Q9BRU9 160 172 UTP23 rRNA-processing protein UTP23 homolog yes yes 2 0.0030477 102.53 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1171 1709 1204 4487 6813 6813 1 AVESGVPQPPDPPVQRDEEEEK ______________________________ QPPDPPVQRDEEEEKEVENEDEDDDDSDKE R A V E K E 1 1 0 2 0 2 5 1 0 0 0 1 0 0 5 1 0 0 0 3 0 0 22 1 2431.1503 Q9P287;B4DUS0;B4E318 Q9P287 9 30 BCCIP BRCA2 and CDKN1A-interacting protein yes no 3 0.0001997 65.022 2 0.86437 1.1584 2.9435 2 Median 0.86437 1.1584 2.9435 2 0 Median NaN NaN NaN 0 0 Median 3537200 1989400 1547800 3537200 1989400 1547800 0 0 0 1172 1779 1205 4488;4489 6814;6815;6816 6814 3 AVETLQAGQDGPGSQVDTLLR QPDMEGLEARRQQEKAVETLQAGQDGPGSQ AGQDGPGSQVDTLLRGVDSLLYRRGPGPLT K A V L R G 2 1 0 2 0 3 1 3 0 0 3 0 0 0 1 1 2 0 0 2 0 0 21 0 2154.0917 Q4VC44;I3L188;J3KNW1;B3KRZ0 Q4VC44 347 367 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 2 3.9697E-97 233.28 5 2 0.6277 0.85131 19.515 6 Median 0.68939 0.91813 8.0181 4 0 Median 0.40047 0.6355 2.1111 2 0 Median 116220000 76977000 39245000 42364000 24127000 18237000 73857000 52849000 21008000 1173 1536 1206 4490;4491;4492;4493;4494;4495;4496 6817;6818;6819;6820;6821;6822;6823;6824;6825;6826;6827 6820 11 AVEVQGPSLESGDHGK VQVPAVDISSSLGGRAVEVQGPSLESGDHG VEVQGPSLESGDHGKIKFPTMKVPKFGVST R A V G K I 1 0 0 1 0 1 2 3 1 0 1 1 0 0 1 2 0 0 0 2 0 0 16 0 1608.7744 Q09666;B4DTV0 Q09666 288 303 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.0031994 50.284 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4909300 1432100 3477200 1432100 1432100 0 3477200 0 3477200 1174 1453 1207 4497;4498;4499 6828;6829;6830 6828 3 AVEYLLMGIPGDR QVIAALRASFNNPDRAVEYLLMGIPGDRES DRAVEYLLMGIPGDRESQAVVDPPQAASTG R A V D R E 1 1 0 1 0 0 1 2 0 1 2 0 1 0 1 0 0 0 1 1 0 0 13 0 1432.7384 P54727;B7Z4W4;B4DEA3;B7ZA74 P54727 221 233 RAD23B UV excision repair protein RAD23 homolog B yes no 2 0.00030053 65.5 2 0.46245 0.67526 12.683 2 Median NaN NaN NaN 0 0 Median 0.46245 0.67526 12.683 2 0 Median 27326000 17754000 9572400 0 0 0 27326000 17754000 9572400 1175 1374 1208 4500;4501 6831;6832 6831 596 2 AVFDETYPDPVR QDCPLAAAKAIQGLRAVFDETYPDPVRVVS GLRAVFDETYPDPVRVVSIGVPVSELLDDP R A V V R V 1 1 0 2 0 0 1 0 0 0 0 0 0 1 2 0 1 0 1 2 0 0 12 0 1407.667 P49588;H3BPK7 P49588 684 695 AARS Alanine--tRNA ligase, cytoplasmic yes no 2 0.0036515 91.265 2 0.71988 0.98661 NaN 1 Median 0.71988 0.98661 NaN 1 0 Median NaN NaN NaN 0 0 Median 7294400 5381300 1913000 7294400 5381300 1913000 0 0 0 1176 1352 1209 4502;4503 6833;6834;6835;6836 6834 4 AVFPSIVGR SGMCKAGFAGDDAPRAVFPSIVGRPRHQGV GDDAPRAVFPSIVGRPRHQGVMVGMGQKDS R A V G R P 1 1 0 0 0 0 0 1 0 1 0 0 0 1 1 1 0 0 0 2 0 0 9 0 944.54435 B7Z6P1;P68133;P68032;A8K3K1;D2JYH4;P63267;P62736;B3KW67;Q13707;Q7Z7J6;A6NL76;C9JUM1;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1;F8WCH0;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KUD3;Q6S8J3;A5A3E0;G5E9R0;E7EVS6;P0CG38;C9JZR7;A1E282;C9JTX5;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 Q53GK6 29 37 ACTA1;ACTC1;ACTA2;ACTG2;ACTB;PS1TP5BP1;POTEE;POTEF;POTEI;ACTG1 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2 4.8264E-05 129.68 7 2 0.7404 1.0254 85.824 6 Median 0.70758 0.97568 6.3293 4 0 Median 3.112 5.1249 3.484 2 0 Median 2567200000 1425100000 1142100000 2219200000 1341100000 878090000 348020000 84040000 263980000 1177 1388;1420;914 1210 4504;4505;4506;4507;4508;4509;4510;4511;4512 6837;6838;6839;6840;6841;6842;6843;6844;6845;6846;6847;6848;6849;6850;6851;6852 6838 16 AVFPSIVGRPR SGMCKAGFAGDDAPRAVFPSIVGRPRHQGV DAPRAVFPSIVGRPRHQGVMVGMGQKDSYV R A V P R H 1 2 0 0 0 0 0 1 0 1 0 0 0 1 2 1 0 0 0 2 0 0 11 1 1197.6982 B7Z6P1;P68133;P68032;A8K3K1;D2JYH4;P63267;P62736;B3KW67;Q13707;Q7Z7J6;A6NL76;C9JUM1;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1;F8WCH0;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KUD3;Q6S8J3;A5A3E0;G5E9R0;E7EVS6;P0CG38;C9JZR7;A1E282;C9JTX5;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 Q53GK6 29 39 ACTA1;ACTC1;ACTA2;ACTG2;ACTB;PS1TP5BP1;POTEE;POTEF;POTEI;ACTG1 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2;3 5.6905E-09 146.69 9 3 0.76488 1.0591 75.488 12 Median 0.72147 0.9981 14.661 9 0 Median 3.1096 5.1072 6.8457 3 0 Median 7548500000 3620300000 3928200000 6351200000 3346300000 3004900000 1197300000 274010000 923270000 1178 1388;1420;914 1211 4513;4514;4515;4516;4517;4518;4519;4520;4521;4522;4523;4524 6853;6854;6855;6856;6857;6858;6859;6860;6861;6862;6863;6864;6865;6866;6867;6868;6869;6870;6871;6872;6873;6874;6875;6876;6877;6878;6879;6880;6881;6882;6883;6884;6885;6886 6857 34 AVFVDLEPTVIDEIR TTFFCETGAGKHVPRAVFVDLEPTVIDEIR AVFVDLEPTVIDEIRNGPYRQLFHPEQLIT R A V I R N 1 1 0 2 0 0 2 0 0 2 1 0 0 1 1 0 1 0 0 3 0 0 15 0 1714.9142 P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2 P68366 65 79 TUBA4A Tubulin alpha-4A chain yes no 2 2.2044E-07 104.94 5 0.42735 0.57506 9.1119 4 Median 0.42735 0.57506 9.1119 4 0 Median NaN NaN NaN 0 0 Median 107430000 74125000 33304000 107430000 74125000 33304000 0 0 0 1179 1422 1212 4525;4526;4527;4528;4529 6887;6888;6889;6890;6891;6892;6893 6891 7 AVFVDLEPTVIDEVR NTFFSETGAGKHVPRAVFVDLEPTVIDEVR AVFVDLEPTVIDEVRTGTYRQLFHPEQLIT R A V V R T 1 1 0 2 0 0 2 0 0 1 1 0 0 1 1 0 1 0 0 4 0 0 15 0 1700.8985 B3KT06;P68363;B3KPS3;A8JZY9;F8VVB9;B4DN58;F8VRZ4;F8VS66;F8VX09;F8VWV9;F8VRK0;Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;Q8N532;Q71U36;F8VQQ4 B3KT06 30 44 TUBA1B;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1C chain;Tubulin alpha-1A chain no no 2 6.6763E-77 229.68 5 2 0.39474 0.54664 131.34 5 Median 0.38895 0.53635 11.874 3 0 Plateau 3.2881 5.4707 1.5745 2 0 Median 2390600000 1261800000 1128800000 1601400000 1080300000 521060000 789220000 181450000 607770000 1180 777;1607;1056 1213 4530;4531;4532;4533;4534;4535;4536 6894;6895;6896;6897;6898;6899;6900;6901;6902;6903;6904 6894 11 AVGASFPLYEPAK KGKGRDVESVQTPSKAVGASFPLYEPAKMK SKAVGASFPLYEPAKMKTPVQYSQQQNSPQ K A V A K M 3 0 0 0 0 0 1 1 0 0 1 1 0 1 2 1 0 0 1 1 0 0 13 0 1348.7027 P46013 P46013 332 344 MKI67 Antigen KI-67 yes yes 2 2.8005E-10 133.75 4 2 1.0048 1.2683 20.174 6 Median 0.9389 1.1748 8.895 4 0 Median 1.083 1.7342 3.1092 2 0 Median 266750000 124710000 142040000 156980000 73157000 83826000 109770000 51550000 58215000 1181 1342 1214 4537;4538;4539;4540;4541;4542 6905;6906;6907;6908;6909;6910;6911;6912;6913;6914;6915;6916;6917 6912 13 AVGSISSTAFDIR TADPRSREVIRNACKAVGSISSTAFDIRFN CKAVGSISSTAFDIRFNPDIFSPGVRFPES K A V I R F 2 1 0 1 0 0 0 1 0 2 0 0 0 1 0 3 1 0 0 1 0 0 13 0 1322.683 I3L2B0;K7EIG1;O75153 I3L2B0 743 755 CLUH Clustered mitochondria protein homolog yes no 2 0.0076636 51.436 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1818200 1818200 0 1818200 1818200 0 0 0 0 1182 1126 1215 4543 6918 6918 1 AVHEQLAALSQAPVNKPK EERATRLAELQEQLKAVHEQLAALSQAPVN EQLAALSQAPVNKPKKKKEKKEKEKKKKDK K A V P K K 4 0 1 0 0 2 1 0 1 0 2 2 0 0 2 1 0 0 0 2 0 0 18 1 1900.053 A0A024R8H6;Q15059;B4DS09;A0A140F1N4 A0A024R8H6 472 489 BRD3 Bromodomain-containing protein 3 yes no 3 0.030107 12.06 1 0.51738 0.74055 NaN 1 Median NaN NaN NaN 0 0 Median 0.51738 0.74055 NaN 1 0 Median 2966300 1858600 1107700 0 0 0 2966300 1858600 1107700 1183 198 1216 4544 6919 6919 1 AVHTVDFTADK ISGRAPLRQFEGHTKAVHTVDFTADKYHVV GHTKAVHTVDFTADKYHVVSGADDYTVKLW K A V D K Y 2 0 0 2 0 0 0 0 1 0 0 1 0 1 0 0 2 0 0 2 0 0 11 0 1202.5932 Q8TED0;H0Y8P4 Q8TED0 124 134 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 0.00065413 86.18 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8602800 8602800 0 0 0 0 8602800 8602800 0 1184 1660 1217 4545 6920 6920 1 AVIDLNNR GNVYVKFRREEDAEKAVIDLNNRWFNGQPI REEDAEKAVIDLNNRWFNGQPIHAELSPVT K A V N R W 1 1 2 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 913.49813 P0DN76;B5BU08;Q01081;Q7Z780 P0DN76 126 133 U2AF1 Splicing factor U2AF 35 kDa subunit yes no 2 0.010024 101.69 2 0.47134 0.64535 61.694 2 Median 0.47134 0.64535 61.694 2 0 Median NaN NaN NaN 0 0 Median 50283000 32802000 17482000 50283000 32802000 17482000 0 0 0 1185 892 1218 4546;4547 6921;6922 6921 2 AVIFDR GVVNSALYNVDAGHRAVIFDRFRGVQDIVV LYNVDAGHRAVIFDRFRGVQDIVVGEGTHF R A V D R F 1 1 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 6 0 719.39662 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0;C9JW96;C9JZ20;E7ESE2;E9PCW0;D6RBK0 Q6PUJ7 36 41 HEL-S-54e;PHB Prohibitin yes no 2 0.035937 110.54 2 0.54742 0.7544 4.9166 2 Median 0.54742 0.7544 4.9166 2 0 Median NaN NaN NaN 0 0 Median 192150000 121730000 70424000 192150000 121730000 70424000 0 0 0 1186 600 1219 4548;4549 6923;6924 6924 2 AVIGIGIEEEDRK CDRAGSVATCQAVMRAVIGIGIEEEDRKHT MRAVIGIGIEEEDRKHTWMEDADSCVAHNA R A V R K H 1 1 0 1 0 0 3 2 0 3 0 1 0 0 0 0 0 0 0 1 0 0 13 1 1427.762 O94906 O94906 528 540 PRPF6 Pre-mRNA-processing factor 6 yes yes 3 0.051234 15.387 1 1.1243 1.7569 NaN 1 Median NaN NaN NaN 0 0 Median 1.1243 1.7569 NaN 1 0 Median 6074700 3484400 2590200 0 0 0 6074700 3484400 2590200 1187 1212 1220 4550 6925 6925 1 AVITPDFEK LTQIKEKKKNELLQKAVITPDFEKNHCVPP NELLQKAVITPDFEKNHCVPPYSESKYQLQ K A V E K N 1 0 0 1 0 0 1 0 0 1 0 1 0 1 1 0 1 0 0 1 0 0 9 0 1018.5335 Q5QJE6 Q5QJE6 607 615 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 2 0.0057662 88.37 3 2 0.95911 1.1638 7.6058 5 Median 0.96451 1.1896 3.5919 3 0 Median 0.70293 1.0613 4.9485 2 0 Median 98546000 51293000 47253000 65909000 32887000 33022000 32638000 18406000 14231000 1188 1561 1221 4551;4552;4553;4554;4555 6926;6927;6928;6929;6930;6931;6932 6930 7 AVKDELLGEKPEVK YFKKHEKRMSKDEERAVKDELLGEKPEVKQ RAVKDELLGEKPEVKQKWASRLLAKLRKDI R A V V K Q 1 0 0 1 0 0 3 1 0 0 2 3 0 0 1 0 0 0 0 2 0 0 14 2 1553.8665 Q6FI30;B7Z4T6;P08651 Q6FI30 47 60 NFIC Nuclear factor 1;Nuclear factor 1 C-type yes no 3 0.00096286 116.9 4 1 0.63324 0.71321 44.991 4 Median 0.55914 0.627 14.952 3 0 Median 0.92424 1.623 NaN 1 0 Median 49842000 25757000 24085000 42822000 22547000 20275000 7020100 3210700 3809400 1189 909 1222 4556;4557;4558;4559;4560 6933;6934;6935;6936;6937 6933 5 AVLALGGSLAGSAAEASHLVTDR PKVLFTGVVDARGERAVLALGGSLAGSAAE LAGSAAEASHLVTDRIRRTVKFLCALGRGI R A V D R I 6 1 0 1 0 0 1 3 1 0 4 0 0 0 0 3 1 0 0 2 0 0 23 0 2165.144 Q14676;B4DYH4 Q14676 1908 1930 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 3 2.3989E-58 158.89 3 3 0.70447 0.99384 13.531 5 Median 0.6924 0.94184 4.0694 3 0 Median 0.7568 1.1969 7.8677 2 0 Median 97536000 56324000 41212000 28441000 16915000 11526000 69095000 39409000 29686000 1190 1491 1223 4561;4562;4563;4564;4565;4566 6938;6939;6940;6941;6942;6943;6944;6945;6946;6947 6945 10 AVLDGLDVLLAQEVR GVLMKGQHLHLETFKAVLDGLDVLLAQEVR AVLDGLDVLLAQEVRP______________ K A V V R P 2 1 0 2 0 1 1 1 0 0 4 0 0 0 0 0 0 0 0 3 0 0 15 0 1609.9039 A0A0G2JRX8;B5MCY4;A0A0G2JRX7;E7EMH2;H7C2P3;E7EW99;B7Z986;B7ZAT0;K9MSY5;K9MRS9;A0A024R1E6;P78395 A0A0G2JRX8 99 113 PRAME Melanoma antigen preferentially expressed in tumors yes no 2 0.00044357 96.604 1 1.0681 1.4995 NaN 1 Median 1.0681 1.4995 NaN 1 0 Median NaN NaN NaN 0 0 Median 1944900 1137800 807080 1944900 1137800 807080 0 0 0 1191 57 1224 4567 6948 6948 1 AVLDSYEYFAVLAAK ILYKRLSVLVKGHDKAVLDSYEYFAVLAAK AVLDSYEYFAVLAAKELGISIKA_______ K A V A K E 4 0 0 1 0 0 1 0 0 0 2 1 0 1 0 1 0 0 2 2 0 0 15 0 1658.8556 Q9BZS5;B4DP77;A0A024RD03;P82664 Q9BZS5 86 100 MRPS10 28S ribosomal protein S10, mitochondrial yes no 2 0.0011088 117.09 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1066700 1066700 0 1066700 1066700 0 0 0 0 1192 306 1225 4568 6949 6949 1 AVLIAGQPGTGK GVVLEMIREGKIAGRAVLIAGQPGTGKTAI AGRAVLIAGQPGTGKTAIAMGMAQALGPDT R A V G K T 2 0 0 0 0 1 0 3 0 1 1 1 0 0 1 0 1 0 0 1 0 0 12 0 1110.6397 Q9Y230;B3KNL2;M0R0Y3;B4DW30;X6R2L4;M0QXI6 Q9Y230 72 83 RUVBL2 RuvB-like 2 yes no 2 0.0020379 57.348 2 0.98611 1.5112 2.0407 2 Median NaN NaN NaN 0 0 Median 0.98611 1.5112 2.0407 2 0 Median 47767000 24247000 23520000 0 0 0 47767000 24247000 23520000 1193 1801 1226 4569;4570 6950;6951;6952 6952 3 AVLICLAQLGEPELR AIRHTPLPQQRHVSKAVLICLAQLGEPELR AVLICLAQLGEPELRDSRDELLASMMAGVK K A V L R D 2 1 0 0 1 1 2 1 0 1 4 0 0 0 1 0 0 0 0 1 0 0 15 0 1680.9233 H3BRS3;B4DXS2;B4DFV7;Q9Y4R8 H3BRS3 363 377 TELO2 Telomere length regulation protein TEL2 homolog yes no 2 5.9231E-05 100.93 1 0.41964 0.55513 NaN 1 Median 0.41964 0.55513 NaN 1 0 Median NaN NaN NaN 0 0 Median 877270 666780 210500 877270 666780 210500 0 0 0 1194 803 1227 4571 6953 6953 1 AVLIDPMHDTLK A V L K 1 0 0 2 0 0 0 0 1 1 2 1 1 0 1 0 1 0 0 1 0 0 12 0 1351.717 REV__B3KRA0 yes yes 2 0.019929 62.546 1 0.68984 0.88963 NaN 1 Median 0.68984 0.88963 NaN 1 0 Median NaN NaN NaN 0 0 Median 5191500 3137100 2054400 5191500 3137100 2054400 0 0 0 + 1195 1848 1228 4572 6954 6954 865 1 AVLLAGPPGTGK GVIVELIKSKKMAGRAVLLAGPPGTGKTAL AGRAVLLAGPPGTGKTALALAIAQELGSKV R A V G K T 2 0 0 0 0 0 0 3 0 0 2 1 0 0 2 0 1 0 0 1 0 0 12 0 1079.6339 B5BUB1;Q9Y265;E7ETR0;B3KRS7 B5BUB1 65 76 RUVBL1 RuvB-like 1 yes no 2 0.00013416 125.71 4 2 0.60849 0.72747 3.1806 4 Linear 0.60849 0.72747 3.1806 4 0 Linear NaN NaN NaN 0 0 Median 147060000 63651000 83410000 105360000 63651000 41710000 41700000 0 41700000 1196 896 1229 4573;4574;4575;4576;4577;4578 6955;6956;6957;6958;6959;6960;6961;6962;6963;6964 6958 10 AVLLQVICLYQK CDAHQCDDAETILLKAVLLQVICLYQKVVP LLKAVLLQVICLYQKVVPHVVMQYNFDFSK K A V Q K V 1 0 0 0 1 2 0 0 0 1 3 1 0 0 0 0 0 0 1 2 0 0 12 0 1446.8269 O60287 O60287 556 567 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 5.3744E-05 120.07 4 0.7568 0.97043 10.725 2 Median 0.7568 0.97043 10.725 2 0 Median NaN NaN NaN 0 0 Median 9199300 5723300 3476000 9199300 5723300 3476000 0 0 0 1197 1190 1230 4579;4580;4581;4582 6965;6966;6967;6968 6967 3 AVLMEKPDVVVGTPSR RVANVSAAEDSVSQRAVLMEKPDVVVGTPS VLMEKPDVVVGTPSRILSHLQQDSLKLRDS R A V S R I 1 1 0 1 0 0 1 1 0 0 1 1 1 0 2 1 1 0 0 4 0 0 16 1 1696.9182 Q9NY93;Q53HB9;H7C3E9;G3V0G3;F8WDT8 Q9NY93 129 144 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 3 4.1268E-07 76.151 3 0.71118 1.1126 6.4334 3 Median NaN NaN NaN 0 0 Median 0.71118 1.1126 6.4334 3 0 Median 28471000 16508000 11963000 0 0 0 28471000 16508000 11963000 1198 1768 1231 4583;4584;4585 6969;6970;6971 6971 819 3 AVLQALEVLPVAPPPEPR LILKQAAKPPISKKKAVLQALEVLPVAPPP QALEVLPVAPPPEPRSLTAEEVKRLEEQEE K A V P R S 3 1 0 0 0 1 2 0 0 0 3 0 0 0 5 0 0 0 0 3 0 0 18 0 1895.088 A0A024R9G7;Q6PL18;A0A0B4J211 A0A024R9G7 951 968 ATAD2 ATPase family AAA domain-containing protein 2 yes no 2 4.6859E-10 114.7 3 1.3278 1.8627 20.011 3 Plateau 1.3278 1.8627 20.011 3 0 Plateau NaN NaN NaN 0 0 Median 9807500 4585700 5221800 9807500 4585700 5221800 0 0 0 1199 221 1232 4586;4587;4588 6972;6973;6974;6975;6976;6977 6972 6 AVLQEEQANLWFSK EEEEENPLLVPLEEKAVLQEEQANLWFSKG KAVLQEEQANLWFSKGSFAGIEDDADEALE K A V S K G 2 0 1 0 0 2 2 0 0 0 2 1 0 1 0 1 0 1 0 1 0 0 14 0 1661.8413 Q8IY81;B4DKU3 Q8IY81 519 532 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 6.8338E-05 91.961 2 0.42548 0.63905 9.5189 2 Median NaN NaN NaN 0 0 Median 0.42548 0.63905 9.5189 2 0 Median 21891000 15435000 6455300 0 0 0 21891000 15435000 6455300 1200 1628 1233 4589;4590 6978;6979;6980 6978 3 AVLQPSINEEIQTVFNK TTSFTDPAISMDLLRAVLQPSINEEIQTVF LQPSINEEIQTVFNKYMKFFQKAALNVRDN R A V N K Y 1 0 2 0 0 2 2 0 0 2 1 1 0 1 1 1 1 0 0 2 0 0 17 0 1929.0207 F2Z2A4;H0Y501;Q9H147;H7C1M5 F2Z2A4 32 48 DNTTIP1 Deoxynucleotidyltransferase terminal-interacting protein 1 yes no 2 6.1393E-07 73.435 1 1 0.71337 0.98898 34.272 2 Median 0.61133 0.77614 NaN 1 0 Median 0.83243 1.2602 NaN 1 0 Median 14887000 7463400 7423700 5729700 3271100 2458500 9157400 4192200 4965100 1201 1049 1234 4591;4592 6981;6982;6983 6981 3 AVLREEDTSNTTFGPADLK EQCTLMAEMHVVLLKAVLREEDTSNTTFGP EEDTSNTTFGPADLKDSVNSTLYFIDGMTW K A V L K D 2 1 1 2 0 0 2 1 0 0 2 1 0 1 1 1 3 0 0 1 0 0 19 1 2063.0171 E7ETD6;Q12830;F5GXF5;A0A0A0MR81;B4DDK2;B4DM40 E7ETD6 154 172 BPTF Nucleosome-remodeling factor subunit BPTF yes no 3 1.4989E-05 97.271 3 2 0.75131 0.97574 37.553 5 Median 0.75131 0.97574 22.585 3 0 Plateau 1.0319 1.5826 0.95545 2 0 Median 47846000 26074000 21772000 28640000 16778000 11862000 19206000 9296300 9909600 1202 1015 1235 4593;4594;4595;4596;4597 6984;6985;6986;6987;6988;6989;6990 6984 7 AVLSCIAPSAK YATLIENDSNPEVRRAVLSCIAPSAKTLPK EVRRAVLSCIAPSAKTLPKIVGRTKDVKEA R A V A K T 3 0 0 0 1 0 0 0 0 1 1 1 0 0 1 2 0 0 0 1 0 0 11 0 1115.6009 Q9BPX3;Q6NUR1;D6RA93 Q9BPX3 198 208 NCAPG Condensin complex subunit 3 yes no 2 0.00023901 89.047 4 2 0.70076 0.87664 17.476 6 Median 0.73916 0.93667 7.5464 4 0 Median 0.44284 0.6712 1.1375 2 0 Median 129960000 73853000 56105000 101490000 53866000 47623000 28469000 19987000 8482000 1203 1706 1236 4598;4599;4600;4601;4602;4603 6991;6992;6993;6994;6995;6996;6997;6998;6999;7000 6995 10 AVLTFALDSVER TLVLDPTSKQEKEARAVLTFALDSVERKLL EARAVLTFALDSVERKLLMSSTKGLYSDTE R A V E R K 2 1 0 1 0 0 1 0 0 0 2 0 0 1 0 1 1 0 0 2 0 0 12 0 1319.7085 Q9NQT4;B2RC50;M0R050 Q9NQT4 179 190 EXOSC5 Exosome complex component RRP46 yes no 2 0.0003044 113.93 4 2 0.44951 0.7311 41.816 3 Median 0.97669 1.3312 NaN 1 0 Median 0.41322 0.6597 14.532 2 0 Median 95299000 65886000 29413000 13627000 9110400 4517100 81671000 56776000 24896000 1204 1753 1237 4604;4605;4606;4607;4608;4609 7001;7002;7003;7004;7005;7006;7007;7008 7005 8 AVLVALK VPPPFLGLPRFEARKAVLVALKERGLFRGI LPRFEARKAVLVALKERGLFRGIEDNPMVV K A V L K E 2 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 2 0 0 7 0 712.48471 A0A024RCN6;P26640;A0A140T936;B4DT32 A0A024RCN6 639 645 VARS Valine--tRNA ligase yes no 2 0.019186 69.39 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2741300 2741300 0 2741300 2741300 0 0 0 0 1205 297 1238 4610 7009 7009 1 AVLVDLEPGTMDSVR NVYYNEATGGKYVPRAVLVDLEPGTMDSVR AVLVDLEPGTMDSVRSGPFGQIFRPDNFVF R A V V R S 1 1 0 2 0 0 1 1 0 0 2 0 1 0 1 1 1 0 0 3 0 0 15 0 1600.8131 Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;M0QY85;B4DNW1;M0R0X0;M0QY37;M0QX14;M0QZL7;A0A075B724;Q3ZCM7;A0A183YE00;P04350;B4DJ43;B4DE77;M0R278 Q8IZ29 63 77 TUBB2C;TUBB4B;TUBB4A;TUBB8 Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-4A chain no no 2 0.00022511 99.539 7 1 0.33449 0.46958 122.88 4 Median 0.29806 0.41597 16.203 3 0 Median 3.1985 5.0805 NaN 1 0 Median 71879000 32613000 39266000 24695000 21198000 3497600 47184000 11415000 35768000 1206 1423;1230;1532 1239;1240 4611;4612;4613;4614;4615;4616;4617;4618 7010;7011;7012;7013;7014;7015;7016;7017;7018 7017 473 9 AVLYADYR GYYNVRAHEDRPSSRAVLYADYRAPGPARF EDRPSSRAVLYADYRAPGPARFDGRPSSRL R A V Y R A 2 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 2 1 0 0 8 0 969.49198 Q5W0G0;Q5W0F9;B4DN67;Q96J84 Q5W0G0 433 440 KIRREL Kin of IRRE-like protein 1 yes no 2 0.0030846 81.381 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1207 835 1241 4619 7019 7019 1 AVNPFLADVDK AFEALGTALKVVGEKAVNPFLADVDKLKLD VGEKAVNPFLADVDKLKLDKIKECSEKVEL K A V D K L 2 0 1 2 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 2 0 0 11 0 1187.6186 Q14008 Q14008 474 484 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0063125 53.756 1 1 0.97597 1.1956 NaN 1 Median 0.97597 1.1956 NaN 1 0 Median NaN NaN NaN 0 0 Median 5248200 2009900 3238200 3774700 2009900 1764800 1473500 0 1473500 1208 1481 1242 4620;4621 7020;7021 7020 2 AVPGTEVPGHK ANLLEKTGGVDFHMKAVPGTEVPGHKNWVV FHMKAVPGTEVPGHKNWVVSKFGRVLPVLH K A V H K N 1 0 0 0 0 0 1 2 1 0 0 1 0 0 2 0 1 0 0 2 0 0 11 0 1090.5771 F5H101;A0A024R250;Q76FK4;F8WE42;B4DM91;Q6AI50;A6H8Z4;F5GWN9;A0A0A0MSJ1;F5H8B8;F5H797;F5H692;Q7Z607 F5H101 129 139 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 2 0.031416 68.371 1 0.99091 1.2543 NaN 1 Median 0.99091 1.2543 NaN 1 0 Median NaN NaN NaN 0 0 Median 3961100 1753100 2208000 3961100 1753100 2208000 0 0 0 1209 80 1243 4622 7022 7022 1 AVPLALALISVSNPR TFGHLLRYGEPTLRRAVPLALALISVSNPR AVPLALALISVSNPRLNILDTLSKFSHDAD R A V P R L 3 1 1 0 0 0 0 0 0 1 3 0 0 0 2 2 0 0 0 2 0 0 15 0 1519.9086 Q59EG8;Q13200;B4DM22;Q13041;H7C1H2 Q59EG8 694 708 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 2 2.7327E-10 139.76 4 0.32751 0.44237 7.9253 4 Median 0.32751 0.44237 7.9253 4 0 Median NaN NaN NaN 0 0 Median 52782000 38114000 14668000 52782000 38114000 14668000 0 0 0 1210 1465 1244 4623;4624;4625;4626 7023;7024;7025;7026;7027;7028;7029;7030;7031 7029 9 AVPLTVAK PWLPECHNKVYLSGKAVPLTVAKSQFSRSS KVYLSGKAVPLTVAKSQFSRSSKAHNQKMK K A V A K S 2 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 1 0 0 2 0 0 8 0 797.50109 B3KSC7;Q96GM8 B3KSC7 206 213 TOE1 Target of EGR1 protein 1 yes no 2 0.043076 44.692 1 0.69944 0.8744 NaN 1 Median 0.69944 0.8744 NaN 1 0 Median NaN NaN NaN 0 0 Median 8623200 4415800 4207400 8623200 4415800 4207400 0 0 0 1211 774 1245 4627 7032 7032 1 AVPPTYADLGK ______________________________ ______________________________ M A V G K S 2 0 0 1 0 0 0 1 0 0 1 1 0 0 2 0 1 0 1 1 0 0 11 0 1130.5972 A0A1L1UHR1;P21796;B3KTS5;B4DEI3;C9JI87 A0A1L1UHR1 2 12 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 1 9.6464E-05 131.52 4 0.58993 0.73184 3.8237 4 Median 0.58993 0.73184 3.8237 4 0 Median NaN NaN NaN 0 0 Median 49340000 29841000 19499000 49340000 29841000 19499000 0 0 0 1212 524 1246 4628;4629;4630;4631 7033;7034;7035;7036 7034 4 AVPSSFSPFVEFK ELVLPALQYLAGESRAVPSSFSPFVEFKEK SRAVPSSFSPFVEFKEKTQQWKLLGQSQDN R A V F K E 1 0 0 0 0 0 1 0 0 0 0 1 0 3 2 3 0 0 0 2 0 0 13 0 1440.7289 A0A024R3K9;A0A024R3N2;Q6P4R8;E9PQ59;B4DSL1 A0A024R3K9 440 452 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2 0.0091319 73.781 1 0.79042 0.99931 NaN 1 Median 0.79042 0.99931 NaN 1 0 Median NaN NaN NaN 0 0 Median 3279100 1870000 1409100 3279100 1870000 1409100 0 0 0 1213 101 1247 4632 7037 7037 1 AVPVWDVLASGYVSGAAR RAATMEVKVGRLRGRAVPVWDVLASGYVSG VWDVLASGYVSGAAREELLAEFGSGTLDLP R A V A R E 4 1 0 1 0 0 0 2 0 0 1 0 0 0 1 2 0 1 1 4 0 0 18 0 1816.9472 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 4670 4687 EPPK1 Epiplakin no no 2 0.035811 32.275 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5151400 0 5151400 0 0 0 5151400 0 5151400 1214 373;1386 1248 4633 7038 7038 1 AVPVWDVLASGYVSR RAATMEVKVGRLRGRAVPVWDVLASGYVSR AVPVWDVLASGYVSRAAREELLAEFGSGTL R A V S R A 2 1 0 1 0 0 0 1 0 0 1 0 0 0 1 2 0 1 1 4 0 0 15 0 1617.8515 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 2533 2547 EPPK1 Epiplakin no no 2 0.032374 35.737 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2390000 0 2390000 0 0 0 2390000 0 2390000 1215 373;1386 1249 4634 7039 7039 1 AVQAFVDGSAIQVLK EIVLVLQQFDFNVDKAVQAFVDGSAIQVLK AVQAFVDGSAIQVLKEWNMTGKKKNNKRKR K A V L K E 3 0 0 1 0 2 0 1 0 1 1 1 0 1 0 1 0 0 0 3 0 0 15 0 1544.8562 C9IZC3;C9J8M7;F2Z2S1;C9JKE4;F8VZ02;F8VT91;C9JGM8;C9JW67;F8W6C2;A0A024R3V0;Q9NUQ6 C9IZC3 43 57 SPATS2L;DNAPTP6 SPATS2-like protein yes no 2 0.00012679 99.539 1 1.4541 1.895 NaN 1 Median 1.4541 1.895 NaN 1 0 Median NaN NaN NaN 0 0 Median 1834500 605310 1229200 1834500 605310 1229200 0 0 0 1216 108 1250 4635 7040 7040 1 AVQFGTGELCDAISAVEEK LRKKELDEEESIRKKAVQFGTGELCDAISA GTGELCDAISAVEEKVSYLRPLDFEEAREL K A V E K V 3 0 0 1 1 1 3 2 0 1 1 1 0 1 0 1 1 0 0 2 0 0 19 0 2022.9568 A0A1B0GUA3;Q96EK5 A0A1B0GUA3 387 405 KIAA1279 KIF1-binding protein yes no 2 2.8255E-05 115.82 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1013200 1013200 0 1013200 1013200 0 0 0 0 1217 516 1251 4636;4637 7041;7042 7041 2 AVQGAQQPSLYQIR SHFKRKFIIHRGKRKAVQGAQQPSLYQIRT KAVQGAQQPSLYQIRTNGSALCTRCIQINT K A V I R T 2 1 0 0 0 4 0 1 0 1 1 0 0 0 1 1 0 0 1 1 0 0 14 0 1557.8263 B4DIX0;Q13045;Q59H95 B4DIX0 1016 1029 FLII Protein flightless-1 homolog yes no 2 4.8312E-14 155.48 4 0.59526 0.83414 9.1584 3 Median 0.59526 0.83414 9.1584 3 0 Median NaN NaN NaN 0 0 Median 10911000 7287100 3624300 10911000 7287100 3624300 0 0 0 1218 812 1252 4638;4639;4640;4641 7043;7044;7045;7046 7044 4 AVQHCLALLNLTLQK LDTYAPFPGKKHLEKAVQHCLALLNLTLQK AVQHCLALLNLTLQKENLFMDLLRESQLAL K A V Q K E 2 0 1 0 1 2 0 0 1 0 5 1 0 0 0 0 1 0 0 1 0 0 15 0 1720.9658 Q92621 Q92621 845 859 NUP205 Nuclear pore complex protein Nup205 yes yes 3 0.0098389 26.771 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4423500 4423500 0 4423500 4423500 0 0 0 0 1219 1673 1253 4642 7047 7047 1 AVQYNEPLK NMYGSQESLTKVFERAVQYNEPLKVFLHLA TKVFERAVQYNEPLKVFLHLADIYAKSEKF R A V L K V 1 0 1 0 0 1 1 0 0 0 1 1 0 0 1 0 0 0 1 1 0 0 9 0 1060.5553 Q14690 Q14690 1684 1692 PDCD11 Protein RRP5 homolog yes yes 2 0.0039873 77.923 2 2 0.76242 1.137 11.399 4 Median 0.80623 1.0156 15.312 2 0 Median 0.76242 1.15 0.96759 2 0 Median 59116000 33357000 25759000 28035000 15871000 12164000 31081000 17486000 13595000 1220 1494 1254 4643;4644;4645;4646 7048;7049;7050;7051;7052;7053 7050 6 AVREPPEDEEEEDGREK LIHVIRHCLNACIQRAVREPPEDEEEEDGR REPPEDEEEEDGREKENVTVLDKTLSVNDV R A V E K E 1 2 0 2 0 0 7 1 0 0 0 1 0 0 2 0 0 0 0 1 0 0 17 2 2012.8923 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 585 601 NCAPG2 Condensin-2 complex subunit G2 yes no 3;4 5.5346E-52 218.28 6 2 0.64867 0.80831 9.3522 8 Median 0.66262 0.80831 10.847 6 0 Median 0.52263 0.80859 4.6991 2 0 Median 116020000 70379000 45642000 104960000 62991000 41972000 11058000 7387400 3670300 1221 1621 1255 4647;4648;4649;4650;4651;4652;4653;4654 7054;7055;7056;7057;7058;7059;7060;7061;7062;7063;7064;7065 7060 12 AVSEEQQPALK HPPKPAKPEKNRINKAVSEEQQPALKGKKG RINKAVSEEQQPALKGKKGKEEKSKGKAKP K A V L K G 2 0 0 0 0 2 2 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 11 0 1198.6194 Q8NE71;Q2L6I2;B4DNU2;Q5STZ8;F5GYK6;A0PJ72 Q8NE71 164 174 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 4.4053E-09 157.91 3 2 0.76311 0.9675 18.396 3 Median 0.78448 0.99562 4.0512 2 0 Median 0.4815 0.72678 NaN 1 0 Median 39032000 27223000 11809000 14935000 7903200 7031600 24098000 19320000 4777600 1222 1653 1256 4655;4656;4657;4658;4659 7066;7067;7068;7069;7070;7071 7067 6 AVSELELLGFIK TSEEMNEIIHARFIRAVSELELLGFIKPTK FIRAVSELELLGFIKPTKQKTDHVARLTWG R A V I K P 1 0 0 0 0 0 2 1 0 1 3 1 0 1 0 1 0 0 0 1 0 0 12 0 1317.7544 B4E014;Q9UBD5 B4E014 621 632 ORC3 Origin recognition complex subunit 3 yes no 2 2.6751E-06 140.83 4 0.55669 0.69948 7.5437 2 Median 0.55669 0.69948 7.5437 2 0 Median NaN NaN NaN 0 0 Median 4729700 3773700 955950 4729700 3773700 955950 0 0 0 1223 882 1257 4660;4661;4662;4663 7072;7073;7074;7075 7073 4 AVSGYSDQVVHQR SCPLLKSLVFSSHCKAVSGYSDQVVHQRRS CKAVSGYSDQVVHQRRSATSSLRRCLLTEL K A V Q R R 1 1 0 1 0 2 0 1 1 0 0 0 0 0 0 2 0 0 1 3 0 0 13 0 1444.7059 A0A024R9R7;Q9ULG1;A8K2V6;H0YMN5 A0A024R9R7 979 991 INOC1;INO80 DNA helicase INO80 yes no 2 0.004718 98.754 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1224 230 1258 4664 7076 7076 1 AVSISTEPPTYLR SEVEEILDGNDEKYKAVSISTEPPTYLREQ YKAVSISTEPPTYLREQKAKRNSQWVPTLP K A V L R E 1 1 0 0 0 0 1 0 0 1 1 0 0 0 2 2 2 0 1 1 0 0 13 0 1432.7562 Q9H836;G5E975;Q12824;Q86WI8;A0A0U1RQQ2;Q86WI7;A0A0U1RRB8;C9JTA6;A0A0G2JSE9;B4E117;B4DRT1 Q9H836 100 112 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 yes no 2 0.00024874 109.83 1 1 0.7393 1.0725 63.724 2 Median 0.49304 0.68345 NaN 1 0 Median 1.1086 1.683 NaN 1 0 Median 22627000 11971000 10655000 5384700 3529300 1855400 17242000 8442000 8800000 1225 1081 1259 4665;4666 7077;7078;7079;7080 7077 4 AVSTVVVTTAPSPK PASHLQQGTASGSSKAVSTVVVTTAPSPKQ KAVSTVVVTTAPSPKQAPEQQ_________ K A V P K Q 2 0 0 0 0 0 0 0 0 0 0 1 0 0 2 2 3 0 0 4 0 0 14 0 1355.766 A0A024R3K9;A0A024R3N2;Q6P4R8 A0A024R3K9 1280 1293 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2 3.834E-06 112.94 1 0.81474 1.0166 NaN 1 Median 0.81474 1.0166 NaN 1 0 Median NaN NaN NaN 0 0 Median 1142500 707140 435320 1142500 707140 435320 0 0 0 1226 101 1260 4667 7081 7081 0 AVSVMWPR A V P R 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 1 0 2 0 0 8 0 944.49021 REV__B3KUP4 yes no 2 0.021625 46.663 1 1.2883 1.7369 NaN 1 Median NaN NaN NaN 0 0 Median 1.2883 1.7369 NaN 1 0 Median 5578700 2298500 3280100 0 0 0 5578700 2298500 3280100 + 1227 1842 1261 4668 7082 7082 861 1 AVTDFVIPECQK EQRCMRYNLSAGTIKAVTDFVIPECQKKSP TIKAVTDFVIPECQKKSPISKSMGTLENTF K A V Q K K 1 0 0 1 1 1 1 0 0 1 0 1 0 1 1 0 1 0 0 2 0 0 12 0 1405.6912 Q6P0N0 Q6P0N0 677 688 MIS18BP1 Mis18-binding protein 1 yes yes 2 0.0025932 61.353 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5089600 5089600 0 5089600 5089600 0 0 0 0 1228 1588 1262 4669 7083 7083 1 AVTEQGAELSNEER AEQAERYDDMATCMKAVTEQGAELSNEERN KAVTEQGAELSNEERNLLSVAYKNVVGGRR K A V E R N 2 1 1 0 0 1 4 1 0 0 1 0 0 0 0 1 1 0 0 1 0 0 14 0 1531.7114 P27348;E9PG15;Q53RR5 P27348 28 41 YWHAQ 14-3-3 protein theta yes no 2 5.6337E-15 134.13 3 2 2.1703 3.0827 110.17 3 Median 0.34664 0.45893 NaN 1 0 Median 2.2485 3.0937 0.50182 2 0 Median 22978000 11653000 11325000 11913000 8227000 3685900 11065000 3426400 7638900 1229 1300 1263 4670;4671;4672;4673;4674 7084;7085;7086;7087;7088;7089;7090;7091 7089 8 AVTEQGHELSNEER AEQAERYDDMAAAMKAVTEQGHELSNEERN KAVTEQGHELSNEERNLLSVAYKNVVGARR K A V E R N 1 1 1 0 0 1 4 1 1 0 1 0 0 0 0 1 1 0 0 1 0 0 14 0 1597.7332 V9HWD6;P31946;B5BU24;Q4VY20;A0A0J9YWZ2;Q4VY19;A0A0J9YWE8;Q59EQ2 V9HWD6 30 43 HEL-S-1;YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 2;3 0.0050576 96.745 1 2 1.2096 1.5206 13.205 2 Median NaN NaN NaN 0 0 Median 1.2096 1.5206 13.205 2 0 Median 3469500 1587700 1881800 0 0 0 3469500 1587700 1881800 1230 1311 1264 4675;4676;4677 7092;7093;7094 7092 3 AVTGYRDPYTGQSVSLFQALK LVGPEFHEKLLSAEKAVTGYRDPYTGQSVS DPYTGQSVSLFQALKKGLIPREQGLRLLDA K A V L K K 2 1 0 1 0 2 0 2 0 0 2 1 0 1 1 2 2 0 2 2 0 0 21 1 2300.1801 Q15149;D3DWL0 Q15149 3238 3258 PLEC;PLEC1 Plectin yes no 3 7.3355E-09 108.37 3 0.76299 0.99548 7.7647 3 Plateau 0.76299 0.99548 7.7647 3 0 Plateau NaN NaN NaN 0 0 Median 56320000 32648000 23672000 56320000 32648000 23672000 0 0 0 1231 1507 1265 4678;4679;4680 7095;7096;7097;7098 7096 4 AVTLDK ______________________________ ______________________________ M A V D K D 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 6 0 645.36974 Q9Y5B9;Q0VGA3;G3V5A4;G3V401;G3V2X0 Q9Y5B9 2 7 SUPT16H FACT complex subunit SPT16 yes no 1 0.0087012 81.381 1 1 0.7623 1.0379 11.359 2 Median 0.77973 0.95783 NaN 1 0 Median 0.74527 1.1248 NaN 1 0 Median 45831000 25218000 20613000 24113000 12984000 11129000 21718000 12234000 9483800 1232 1829 1266 4681;4682 7099;7100 7100 0 AVTLGALK A V L K 2 0 0 0 0 0 0 1 0 0 2 1 0 0 0 0 1 0 0 1 0 0 8 0 771.48544 REV__C0JYZ2 yes no 2 0.016541 62.714 2 0.33107 0.40592 2.0176 2 Median 0.33107 0.40592 2.0176 2 0 Median NaN NaN NaN 0 0 Median 79292000 57509000 21783000 79292000 57509000 21783000 0 0 0 + 1233 1841 1267 4683;4684 7101;7102;7103;7104 7103 4 AVVGVVAGGGR KLPSGSKKVISSANRAVVGVVAGGGRIDKP SANRAVVGVVAGGGRIDKPILKAGRAYHKY R A V G R I 2 1 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 4 0 0 11 0 940.54541 P62917;E9PKZ0;E9PKU4;E9PP36 P62917 164 174 RPL8 60S ribosomal protein L8 yes no 2 5.5819E-12 143.11 6 2 0.76348 1.0181 15.367 7 Plateau 0.74951 1.038 2.8353 5 0 Median 0.46159 0.76469 0.051942 2 0 Median 3752200000 2156800000 1595400000 3199600000 1781900000 1417700000 552540000 374840000 177710000 1234 1417 1268 4685;4686;4687;4688;4689;4690;4691;4692 7105;7106;7107;7108;7109;7110;7111;7112;7113;7114;7115;7116;7117;7118;7119;7120;7121;7122;7123 7109 19 AVVIVDDR ELLEEAFSVFGQVERAVVIVDDRGRPSGKG VFGQVERAVVIVDDRGRPSGKGIVEFSGKP R A V D R G 1 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 3 0 0 8 0 885.49198 Q9BSV4;Q86VG2;P23246;Q6PIX2;A8K525;A0A0S2Z4Z9;Q15233;H7C367;C9IZL7 A8K525 177 184 SFPQ;NONO Splicing factor, proline- and glutamine-rich;Non-POU domain-containing octamer-binding protein no no 2 0.0088352 101.28 4 2 0.38009 0.52274 4.8149 4 Median 0.38009 0.52274 4.8149 4 0 Median NaN NaN NaN 0 0 Median 497300000 348990000 148300000 484810000 348990000 135820000 12486000 0 12486000 1235 473;1292 1269 4693;4694;4695;4696;4697;4698 7124;7125;7126;7127;7128;7129;7130;7131;7132;7133 7130 10 AVVLPGR SVLCLYDLGISKVVKAVVLPGRVTAIEPII LGISKVVKAVVLPGRVTAIEPIINHGGASA K A V G R V 1 1 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 2 0 0 7 0 710.44391 Q8WYP5;Q96M44 Q8WYP5 119 125 AHCTF1 Protein ELYS yes no 2 0.016954 97.64 3 2 0.61644 0.8439 19.533 4 Median 0.74165 1.0033 4.3749 2 0 Median 0.51125 0.71814 2.7336 2 0 Median 30240000 19457000 10782000 18333000 11699000 6634000 11906000 7758000 4148200 1236 1670 1270 4699;4700;4701;4702;4703 7134;7135;7136;7137;7138 7136 5 AVVMPLQLIQEQAASPNAEIHILK PLSHRTVTGAKPLKKAVVMPLQLIQEQAAS QEQAASPNAEIHILKNKGRKRKLESLDALE K A V L K N 4 0 1 0 0 3 2 0 1 3 3 1 1 0 2 1 0 0 0 2 0 0 24 0 2612.436 Q14807;A0A024R632;B7Z9T5;H3BRB3;Q14985;O60846;Q7LE35;I3L306 Q14807 529 552 KIF22;OBP-2;A-328A3.5 Kinesin-like protein KIF22;Kinesin-like protein yes no 3 0.012674 19.378 1 0.75216 0.94855 NaN 1 Median 0.75216 0.94855 NaN 1 0 Median NaN NaN NaN 0 0 Median 2277300 1246500 1030800 2277300 1246500 1030800 0 0 0 1237 1497 1271 4704 7139;7140 7140 2 AVVVCPK AQRRKMCLFAGFQRKAVVVCPKDEDYKQRT LFAGFQRKAVVVCPKDEDYKQRTQKKAEVE K A V P K D 1 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 3 0 0 7 0 771.4313 Q96BA7;B3KX72;B4DLR3;Q00839;Q7Z4Q5 Q96BA7 500 506 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 2 0.028657 65.263 1 0.33703 0.42041 NaN 1 Median 0.33703 0.42041 NaN 1 0 Median NaN NaN NaN 0 0 Median 34929000 26737000 8192200 34929000 26737000 8192200 0 0 0 1238 788 1272 4705 7141 7141 1 AVVVCPKDEDYK AQRRKMCLFAGFQRKAVVVCPKDEDYKQRT QRKAVVVCPKDEDYKQRTQKKAEVEGKDLP K A V Y K Q 1 0 0 2 1 0 1 0 0 0 0 2 0 0 1 0 0 0 1 3 0 0 12 1 1421.6861 Q96BA7;B3KX72;B4DLR3;Q00839;Q7Z4Q5 Q96BA7 500 511 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 3 0.0034333 84.821 1 0.28091 0.3453 NaN 1 Median 0.28091 0.3453 NaN 1 0 Median NaN NaN NaN 0 0 Median 10207000 7452400 2754400 10207000 7452400 2754400 0 0 0 1239 788 1273 4706 7142 7142 1 AVVVPAR HKRPAPEKKETTVKKAVVVPARSEALGKEA KKETTVKKAVVVPARSEALGKEAACESSTP K A V A R S 2 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 3 0 0 7 0 710.44391 Q9BTC0 Q9BTC0 482 488 DIDO1 Death-inducer obliterator 1 yes yes 2 0.03156 58.661 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3076900 3076900 0 0 0 0 3076900 3076900 0 1240 1713 1274 4707 7143 7143 1 AVYTQDCPLAAAK KKAEEIANEMIEAAKAVYTQDCPLAAAKAI AKAVYTQDCPLAAAKAIQGLRAVFDETYPD K A V A K A 4 0 0 1 1 1 0 0 0 0 1 1 0 0 1 0 1 0 1 1 0 0 13 0 1406.6864 P49588;H3BPK7 P49588 665 677 AARS Alanine--tRNA ligase, cytoplasmic yes no 2 0.0003078 68.893 1 0.82771 1.0512 NaN 1 Median 0.82771 1.0512 NaN 1 0 Median NaN NaN NaN 0 0 Median 5667900 3249600 2418300 5667900 3249600 2418300 0 0 0 1241 1352 1275 4708 7144 7144 1 AWIPSENIQDITVNIHR DNQVDVRFFGHHHQRAWIPSENIQDITVNI IPSENIQDITVNIHRLHVKRSMGWKKACDE R A W H R L 1 1 2 1 0 1 1 0 1 4 0 0 0 0 1 1 1 1 0 1 0 0 17 0 2005.0381 Q5BJG6;B7Z3W2;J3QKD2;Q15326;Q6PJR5;A0A0A0MRY2;B0QZE2;B7Z2J6;E7ENI9;Q5UGI2;B7Z3Z1 Q5BJG6 224 240 ZMYND11 Zinc finger MYND domain-containing protein 11 yes no 3 0.00059447 51.888 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8321800 0 8321800 0 0 0 8321800 0 8321800 1242 906 1276 4709 7145 7145 1 AWNDIKK YKKTKEAVLLLKKLKAWNDIKKVYASQRMR VLLLKKLKAWNDIKKVYASQRMRAGKGKMR K A W K K V 1 0 1 1 0 0 0 0 0 1 0 2 0 0 0 0 0 1 0 0 0 0 7 1 873.47085 P36578;Q59GY2;B4DFI6;H3BM89;B4DMJ6;Q53G74;B4DMJ2;H3BTP7 P36578 176 182 RPL4 60S ribosomal protein L4 yes no 2 0.038246 60.788 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9909900 9909900 0 0 0 0 9909900 9909900 0 1243 1325 1277 4710 7146 7146 1 AWNPFR KRVSISEGDDKIEYRAWNPFRSKLAAAILG EGDDKIEYRAWNPFRSKLAAAILGGVDQIH R A W F R S 1 1 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 6 0 789.39221 Q96BS4;P22087;M0R299;M0QXL5;M0R2Q4;B4DLD4;M0R0P1;M0R2U2;M0R1H0;M0R2B0 Q96BS4 75 80 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2 0.044875 74.849 1 0.5778 0.78267 NaN 1 Median 0.5778 0.78267 NaN 1 0 Median NaN NaN NaN 0 0 Median 3460500 1725600 1734900 3460500 1725600 1734900 0 0 0 1244 1288 1278 4711 7147 7147 1 AYAALAALEK GQKFQGAGSNKKVAKAYAALAALEKLFPDT KKVAKAYAALAALEKLFPDTPLALDANKKK K A Y E K L 5 0 0 0 0 0 1 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 10 0 1019.5651 F4ZW64;A8K590;F4ZW65;A0A024R7C7;F4ZW66;Q12906;B4DFG4;B4DDF3 F4ZW64 578 587 ILF3 Interleukin enhancer-binding factor 3 yes no 2 0.0048098 75.378 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7722500 7722500 0 7722500 7722500 0 0 0 0 1245 175 1279 4712;4713 7148;7149 7149 2 AYADFYR VAALYKFRVADQRKKAYADFYRNYDVMKDF RVADQRKKAYADFYRNYDVMKDFEEMRKAG K A Y Y R N 2 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 7 0 904.40792 A0A024R9B7;P09669 A0A024R9B7 48 54 COX6C Cytochrome c oxidase subunit 6C yes no 2 0.032699 60.788 2 0.65673 0.87555 4.0847 2 Median 0.65673 0.87555 4.0847 2 0 Median NaN NaN NaN 0 0 Median 46459000 27877000 18582000 46459000 27877000 18582000 0 0 0 1246 216 1280 4714;4715 7150;7151 7151 2 AYAPGGPAYQPVVEAFGTDILHK GLGAFVIDSDHLGHRAYAPGGPAYQPVVEA YQPVVEAFGTDILHKDGIINRKVLGSRVFG R A Y H K D 4 0 0 1 0 1 1 3 1 1 1 1 0 1 3 0 1 0 2 2 0 0 23 0 2400.2114 Q13057 Q13057 395 417 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes yes 3 4.816E-09 87.496 3 2 0.37056 0.46606 176.35 3 Median 0.31622 0.39579 23.112 2 0 Median 5.6279 8.285 NaN 1 0 Median 41421000 23282000 18139000 28242000 22029000 6213100 13179000 1253200 11926000 1247 1462 1281 4716;4717;4718;4719;4720 7152;7153;7154;7155;7156 7154 5 AYDGTTYLPGIVGLNNIK KQQIANLDKQAKLSRAYDGTTYLPGIVGLN GTTYLPGIVGLNNIKANDYANAVLQALSNV R A Y I K A 1 0 2 1 0 0 0 3 0 2 2 1 0 0 1 0 2 0 2 1 0 0 18 0 1907.9993 B9A018;Q53GS9;B7Z7L9;A0A087X1B2;A0A087WW31 B9A018 214 231 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 2 1.7047E-05 97.957 4 0.66345 0.87025 17.08 3 Median 0.66345 0.87025 17.08 3 0 Median NaN NaN NaN 0 0 Median 18413000 11671000 6742300 18413000 11671000 6742300 0 0 0 1248 926 1282 4721;4722;4723;4724 7157;7158;7159;7160;7161;7162;7163;7164 7162 8 AYDIAGSTK MQSLDKDIVALMVRRAYDIAGSTKDVKVFL ALMVRRAYDIAGSTKDVKVFLNGNKLPVKG R A Y T K D 2 0 0 1 0 0 0 1 0 1 0 1 0 0 0 1 1 0 1 0 0 0 9 0 924.45526 P11388 P11388 243 251 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0037417 76.064 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17571000 17571000 0 17571000 17571000 0 0 0 0 1249 1256 1283 4725 7165 7165 1 AYEAAASALQIATHTAFVAK STESCNQQLDLALCRAYEAAASALQIATHT ASALQIATHTAFVAKAMQADISQAAQILSS R A Y A K A 8 0 0 0 0 1 1 0 1 1 1 1 0 1 0 1 2 0 1 1 0 0 20 0 2033.0582 P42166 P42166 572 591 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2;3 4.2666E-06 99.566 4 0.48005 0.60092 2.88 2 Median 0.48005 0.60092 2.88 2 0 Median NaN NaN NaN 0 0 Median 25510000 21423000 4087800 25510000 21423000 4087800 0 0 0 1250 1335 1284 4726;4727;4728;4729 7166;7167;7168;7169 7168 4 AYHEQLSVAEITNACFEPANQMVK HFPLATYAPVISAEKAYHEQLSVAEITNAC EITNACFEPANQMVKCDPRHGKYMACCLLY K A Y V K C 4 0 2 0 1 2 3 0 1 1 1 1 1 1 1 1 1 0 1 2 0 0 24 0 2749.284 B3KT06;P68363;B3KPS3;A8JZY9;B4DDU2;C9JDS9;P68366;Q71U36;B4DQK4;Q1ZYQ1;Q13748;Q9UQM3;Q6PEY2 B3KT06 246 269 TUBA1B;TUBA4A;TUBA1A;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 3 1.9119E-48 172.77 7 0.40546 0.50947 9.1665 6 Median 0.40546 0.50947 9.1665 6 0 Median NaN NaN NaN 0 0 Median 118030000 81475000 36556000 118030000 81475000 36556000 0 0 0 1251 777;1422;1607 1285;1286 4730;4731;4732;4733;4734;4735;4736 7170;7171;7172;7173;7174;7175;7176;7177;7178;7179;7180;7181;7182 7178 282 13 AYHEQLTVAEITNACFEPANQMVK HFPLATYAPVISAEKAYHEQLTVAEITNAC EITNACFEPANQMVKCDPRHGKYMACCLLY K A Y V K C 4 0 2 0 1 2 3 0 1 1 1 1 1 1 1 0 2 0 1 2 0 0 24 0 2763.2996 Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;Q8N532 Q53GA7 281 304 TUBA1C Tubulin alpha-1C chain yes no 3 2.5101E-08 89.622 4 0.4656 0.59848 21.132 2 Median 0.4656 0.59848 21.132 2 0 Median NaN NaN NaN 0 0 Median 8738000 6177000 2561100 8738000 6177000 2561100 0 0 0 1252 1056 1287;1288 4737;4738;4739;4740 7183;7184;7185;7186;7187 7187 377 5 AYIQENLELVEK HGGGPTVTAGLPLPKAYIQENLELVEKGFS LPKAYIQENLELVEKGFSNLKKQIENARMF K A Y E K G 1 0 1 0 0 1 3 0 0 1 2 1 0 0 0 0 0 0 1 1 0 0 12 0 1447.7559 A0A024R652;F5H2F4;B7Z809;P11586 A0A024R652 722 733 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.0013071 107.55 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3579900 3579900 0 3579900 3579900 0 0 0 0 1253 154 1289 4741;4742;4743 7188;7189;7190 7190 3 AYLFAHAVDFVPSEENNLVGTLK LANQKQQHLAFRDRRAYLFAHAVDFVPSEE DFVPSEENNLVGTLKISGYVRGQTLNVNRL R A Y L K I 3 0 2 1 0 0 2 1 1 0 3 1 0 2 1 1 1 0 1 3 0 0 23 0 2533.2853 Q2NL82;I3L1Q5 Q2NL82 251 273 TSR1 Pre-rRNA-processing protein TSR1 homolog yes no 3 5.0627E-20 132.52 3 1 0.65291 0.85286 5.8237 4 Median 0.68657 0.85516 3.2248 3 0 Plateau 0.61777 0.92884 NaN 1 0 Median 86751000 51276000 35475000 66482000 39229000 27254000 20268000 12047000 8221600 1254 1529 1290 4744;4745;4746;4747 7191;7192;7193;7194;7195;7196;7197;7198 7191 8 AYLPVNESFGFTADLR FEESQVAGTPMFVVKAYLPVNESFGFTADL YLPVNESFGFTADLRSNTGGQAFPQCVFDH K A Y L R S 2 1 1 1 0 0 1 1 0 0 2 0 0 2 1 1 1 0 1 1 0 0 16 0 1798.889 P13639;Q8TA90;B4DPU3 P13639 786 801 EEF2 Elongation factor 2 yes no 2 2.3194E-29 158.34 4 2 0.59194 0.80777 132.27 6 Median 0.58295 0.7901 2.6642 4 0 Median 6.3215 10.278 6.3911 2 0 Median 320430000 133600000 186830000 182590000 115270000 67317000 137840000 18326000 119510000 1255 1264 1291 4748;4749;4750;4751;4752;4753 7199;7200;7201;7202;7203;7204;7205;7206;7207;7208;7209;7210;7211 7207 13 AYLQQLR IYAKPANKQEDEVMRAYLQQLRQETGLRLC KQEDEVMRAYLQQLRQETGLRLCEKVFDPQ R A Y L R Q 1 1 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 7 0 890.4974 Q2LE71;B2R4D5;O15145;B4DM63 Q2LE71 131 137 ARPC3 Actin-related protein 2/3 complex subunit 3 yes no 2 0.0041441 120.76 3 1.1766 1.5802 NaN 1 Median 1.1766 1.5802 NaN 1 0 Median NaN NaN NaN 0 0 Median 22847000 15135000 7712000 22847000 15135000 7712000 0 0 0 1256 683 1292 4754;4755;4756 7212;7213;7214 7214 3 AYPLADAHLTK ______________________________ VNPKAYPLADAHLTKKLLDLVQQSCNYKQL K A Y T K K 3 0 0 1 0 0 0 0 1 0 2 1 0 0 1 0 1 0 1 0 0 0 11 0 1198.6346 Q6FHM6;B1AHD1;P55769 Q6FHM6 10 20 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes no 2;3 0.00012054 91.265 7 4 0.67034 0.86303 12.298 11 Median 0.71793 0.94598 8.3059 7 0 Median 0.47527 0.75498 3.4064 4 0 Median 1287500000 784290000 503190000 941300000 554280000 387010000 346180000 230010000 116180000 1257 670 1293 4757;4758;4759;4760;4761;4762;4763;4764;4765;4766;4767 7215;7216;7217;7218;7219;7220;7221;7222;7223;7224;7225;7226;7227;7228;7229;7230;7231 7218 17 AYPVSGCFDYLSEDLPDTIHIGGR KGFINMQSVAKFVTKAYPVSGCFDYLSEDL YLSEDLPDTIHIGGRIAPKTVWDYVGKLKS K A Y G R I 1 1 0 3 1 0 1 3 1 2 2 0 0 1 2 2 1 0 2 1 0 0 24 0 2681.2432 Q9BTC0 Q9BTC0 1073 1096 DIDO1 Death-inducer obliterator 1 yes yes 3 2.0684E-14 102.48 4 0.91252 1.2126 8.3076 4 Median 0.91252 1.2126 8.3076 4 0 Median NaN NaN NaN 0 0 Median 57254000 33834000 23420000 57254000 33834000 23420000 0 0 0 1258 1713 1294 4768;4769;4770;4771 7232;7233;7234;7235;7236 7235 5 AYQHGGVTGLSQY IDVALSQDSTYQGERAYQHGGVTGLSQY__ ERAYQHGGVTGLSQY_______________ R A Y Q Y - 1 0 0 0 0 2 0 3 1 0 1 0 0 0 0 1 1 0 2 1 0 0 13 0 1379.647 A0A024R7L5;A0A024R7L8;Q92900;B3KY55;A0A059XG73;A0A059XBJ6;A0A059XAM1 A0A024R7L5 1106 1118 UPF1 Regulator of nonsense transcripts 1 yes no 2 0.00021704 126.39 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5321000 0 0 5321000 0 0 0 0 0 1259 180 1295 4772;4773;4774 7237;7238;7239 7238 3 AYSDPSTGEPATYGELQQR EETSRALSAPRADAKAYSDPSTGEPATYGE PSTGEPATYGELQQRCRPDQLTGLSLLPLS K A Y Q R C 2 1 0 1 0 2 2 2 0 0 1 0 0 0 2 2 2 0 2 0 0 0 19 0 2068.9338 Q15149;D3DWL0 Q15149 3317 3335 PLEC;PLEC1 Plectin yes no 2 1.3503E-62 217.12 4 1 0.69036 0.91635 55.304 5 Median 0.67679 0.90273 6.3704 4 0 Median 2.1642 3.0446 NaN 1 0 Median 62822000 34084000 28738000 54777000 31792000 22985000 8045200 2291900 5753300 1260 1507 1296 4775;4776;4777;4778;4779 7240;7241;7242;7243;7244;7245;7246;7247;7248;7249;7250;7251;7252;7253 7241 14 AYSDQAIVNLLK KALLDNTKDKNTVVRAYSDQAIVNLLKMRQ VVRAYSDQAIVNLLKMRQGEEVFQSLSKIL R A Y L K M 2 0 1 1 0 1 0 0 0 1 2 1 0 0 0 1 0 0 1 1 0 0 12 0 1333.7242 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2610 2621 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 2.5637E-07 99.653 3 2 1.1821 1.5018 43.835 3 Plateau 1.1821 1.5018 43.835 3 0 Plateau NaN NaN NaN 0 0 Median 28557000 10492000 18066000 22113000 10492000 11621000 6444800 0 6444800 1261 1000 1297 4780;4781;4782;4783;4784 7254;7255;7256;7257;7258;7259;7260;7261 7256 8 AYTDAASLEVHLSTHTVK QHNKDKPFKCHNCHRAYTDAASLEVHLSTH DAASLEVHLSTHTVKHAKVYTCTICSRAYT R A Y V K H 3 0 0 1 0 0 1 0 2 0 2 1 0 0 0 2 3 0 1 2 0 0 18 0 1941.9796 D3DUR9;Q8TF68;R4GMR4 D3DUR9 411 428 ZNF384 Zinc finger protein 384 yes no 3 0.046345 34.87 1 0.86366 1.115 NaN 1 Median 0.86366 1.115 NaN 1 0 Median NaN NaN NaN 0 0 Median 8199500 4651300 3548200 8199500 4651300 3548200 0 0 0 1262 983 1298 4785 7262;7263 7262 2 AYTNFDAERDALNIETAIK EGDHSTPPSAYGSVKAYTNFDAERDALNIE FDAERDALNIETAIKTKGVDEVTIVNILTN K A Y I K T 4 1 2 2 0 0 2 0 0 2 1 1 0 1 0 0 2 0 1 0 0 0 19 1 2154.0593 H0YKS4;H0YMD0;H0YMU9;H0YN42;V9HW65;A0A024R5Z7;P07355;H0YMM1;B4DNH8;A6NMY6;H0YKL9;H0YKZ7;H0YLV6;H0YMT9;H0YKX9;H0YMW4;H0YKV8;H0YMD9;H0YNB8;H0YKN4 H0YKS4 29 47 ANXA2;HEL-S-270;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 3 0.001453 50.178 3 0.41704 0.54201 10.863 3 Plateau 0.41704 0.54201 10.863 3 0 Plateau NaN NaN NaN 0 0 Median 32658000 23818000 8840400 32658000 23818000 8840400 0 0 0 1263 153 1299 4786;4787;4788 7264;7265;7266;7267 7267 4 AYVDDTPAEQMK ETIMKYAEKLIQEGKAYVDDTPAEQMKAER EGKAYVDDTPAEQMKAEREQRIDSKHRKNP K A Y M K A 2 0 0 2 0 1 1 0 0 0 0 1 1 0 1 0 1 0 1 1 0 0 12 0 1366.6075 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 289 300 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.00025438 73.887 2 2.7201 4.1184 0.48226 2 Median NaN NaN NaN 0 0 Median 2.7201 4.1184 0.48226 2 0 Median 25337000 7299400 18038000 0 0 0 25337000 7299400 18038000 1264 1242 1300 4789;4790 7268;7269;7270;7271 7270 484 4 AYVEIEYEQETEPVAK HKGKMPLRGPLQRKRAYVEIEYEQETEPVA YVEIEYEQETEPVAKAKTT___________ R A Y A K A 2 0 0 0 0 1 5 0 0 1 0 1 0 0 1 0 1 0 2 2 0 0 16 0 1896.8993 Q9BXY0 Q9BXY0 281 296 MAK16 Protein MAK16 homolog yes yes 2 2.762E-42 196.16 4 2 0.7135 0.91904 30.372 5 Median 0.74704 0.95275 23.114 4 0 Median 0.40517 0.61253 NaN 1 0 Median 38463000 21642000 16822000 18182000 10541000 7641600 20281000 11101000 9180100 1265 1724 1301 4791;4792;4793;4794;4795;4796 7272;7273;7274;7275;7276;7277;7278;7279;7280;7281 7272 10 AYVRLAPDYDALDVANK VAKVNTLIRPDGEKKAYVRLAPDYDALDVA VRLAPDYDALDVANKIGII___________ K A Y N K I 4 1 1 3 0 0 0 0 0 0 2 1 0 0 1 0 0 0 2 2 0 0 17 1 1892.9632 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7 H7BY10 138 154 RPL23A 60S ribosomal protein L23a yes no 3 0.00071338 40.856 1 0.92889 1.2098 NaN 1 Median 0.92889 1.2098 NaN 1 0 Median NaN NaN NaN 0 0 Median 23097000 12676000 10421000 23097000 12676000 10421000 0 0 0 1266 658 1302 4797 7282 7282 1 AYVSLFMR WLVRDLRGKSEKEFKAYVSLFMRHLCEPGA KSEKEFKAYVSLFMRHLCEPGADGAETFAD K A Y M R H 1 1 0 0 0 0 0 0 0 0 1 0 1 1 0 1 0 0 1 1 0 0 8 0 985.50552 B3KY63;F5GWX5;A0A0C4DGG9;Q14839;Q8TDI0;K7EMY3;Q659F1;Q659D0;Q6ZU36;Q12873;B4DLC6;B4DKV1;Q2TAZ1;B3KWV4 B3KY63 1432 1439 CHD4;CHD5;DKFZp434K213;DKFZp434P202;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 no no 2 0.018809 49.358 2 1.007 1.4332 1.586 2 Median NaN NaN NaN 0 0 Median 1.007 1.4332 1.586 2 0 Median 24169000 11369000 12800000 0 0 0 24169000 11369000 12800000 1267 428;1458 1303 4798;4799 7283;7284 7283 142 2 AYVVLGQFLVLK GEVLGKKLEERGFDKAYVVLGQFLVLKKDE FDKAYVVLGQFLVLKKDEDLFREWLKDTCG K A Y L K K 1 0 0 0 0 1 0 1 0 0 3 1 0 1 0 0 0 0 1 3 0 0 12 0 1348.8119 A0A024R5H0;O75531;B2R4V4 A0A024R5H0 42 53 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 2 1.0117E-15 141.52 20 2 0.98766 1.2445 13.778 16 Median 0.99071 1.2974 13.199 14 0 Median 0.69256 1.0947 9.8277 2 0 Median 5685000000 2865100000 2819900000 5406700000 2704400000 2702400000 278300000 160800000 117510000 1268 143 1304 4800;4801;4802;4803;4804;4805;4806;4807;4808;4809;4810;4811;4812;4813;4814;4815;4816;4817;4818;4819;4820;4821 7285;7286;7287;7288;7289;7290;7291;7292;7293;7294;7295;7296;7297;7298;7299;7300;7301;7302;7303;7304;7305;7306;7307;7308;7309;7310;7311;7312;7313;7314;7315;7316;7317;7318;7319;7320;7321 7304 37 AYVVLGQFLVLKK GEVLGKKLEERGFDKAYVVLGQFLVLKKDE DKAYVVLGQFLVLKKDEDLFREWLKDTCGA K A Y K K D 1 0 0 0 0 1 0 1 0 0 3 2 0 1 0 0 0 0 1 3 0 0 13 1 1476.9068 A0A024R5H0;O75531;B2R4V4 A0A024R5H0 42 54 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 2;3 1.619E-06 140.11 9 3 1.0389 1.2792 26.386 12 Median 1.061 1.2954 16.94 9 0 Median 0.65103 1.0466 18.392 3 0 Plateau 344480000 167720000 176760000 310270000 144310000 165960000 34218000 23414000 10803000 1269 143 1305 4822;4823;4824;4825;4826;4827;4828;4829;4830;4831;4832;4833 7322;7323;7324;7325;7326;7327;7328;7329;7330;7331;7332;7333;7334;7335;7336;7337;7338;7339 7327 18 CAARDPEDRIPSPLGYAAIPIK ______________________________ DRIPSPLGYAAIPIKFSEKQQASHYLYVRA K C A I K F 4 2 0 2 1 0 1 1 0 3 1 1 0 0 4 1 0 0 1 0 0 0 22 2 2409.2475 Q9Y3A4 Q9Y3A4 8 29 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 4 0.00031898 35.973 2 0.83064 1.0105 2.3546 2 Median 0.83064 1.0105 2.3546 2 0 Median NaN NaN NaN 0 0 Median 18040000 10020000 8019600 18040000 10020000 8019600 0 0 0 1270 1815 1306 4834;4835 7340;7341;7342 7341 3 CAGCTNPISGLGGTK FAYCLNCFCDLYAKKCAGCTNPISGLGGTK CAGCTNPISGLGGTKYISFEERQWHNDCFN K C A T K Y 1 0 1 0 2 0 0 4 0 1 1 1 0 0 1 1 2 0 0 0 0 0 15 0 1491.681 I0CE67;Q6I9R8;Q2XQU9;J3KNW4;A0A0A0MSG2;Q14192;Q2TSB7;Q53T40 I0CE67 211 225 FHL2;AAG11 Four and a half LIM domains protein 2 yes no 2 0.00026346 63.408 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1945800 1945800 0 1945800 1945800 0 0 0 0 1271 396 1307 4836 7343 7343 1 CAGPTPEAELQALAR GNLLASDRNPPTGLRCAGPTPEAELQALAR CAGPTPEAELQALARDNTQLLINQLWQLPT R C A A R D 4 1 0 0 1 1 2 1 0 0 2 0 0 0 2 0 1 0 0 0 0 0 15 0 1582.7773 Q15050 Q15050 52 66 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 1.4752E-13 147.91 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58652000 58652000 0 58652000 58652000 0 0 0 0 1272 1503 1308 4837;4838;4839 7344;7345;7346 7346 3 CAPGVGLVR STCPAACHCPLEAPKCAPGVGLVRDGCGCC PLEAPKCAPGVGLVRDGCGCCKVCAKQLNE K C A V R D 1 1 0 0 1 0 0 2 0 0 1 0 0 0 1 0 0 0 0 2 0 0 9 0 927.49602 Q6FI18;O00622;Q53FA4 Q6FI18 39 47 CYR61 Protein CYR61 yes no 2 0.02437 49.358 1 1.4445 1.9938 NaN 1 Median 1.4445 1.9938 NaN 1 0 Median NaN NaN NaN 0 0 Median 10348000 4222800 6125400 10348000 4222800 6125400 0 0 0 1273 1168 1309 4840 7347 7347 1 CAPGVVGPAEADIDFDIIRNDNDTFTVK DCAEAGQGDVSIGIKCAPGVVGPAEADIDF DFDIIRNDNDTFTVKYTPRGAGSYTIMVLF K C A V K Y 3 1 2 5 1 0 1 2 0 3 0 1 0 2 2 0 2 0 0 3 0 0 28 1 3048.4499 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 810 837 FLNA Filamin-A yes no 3 0.015628 19.655 1 1.2922 1.6332 NaN 1 Median 1.2922 1.6332 NaN 1 0 Median NaN NaN NaN 0 0 Median 6869800 3501800 3368000 6869800 3501800 3368000 0 0 0 1274 1287 1310 4841 7348 7348 1 CCAVYEEAVK TKQAKAVEVGRKEERCCAVYEEAVKTLPTE RKEERCCAVYEEAVKTLPTEAMWKCYITFC R C C V K T 2 0 0 0 2 0 2 0 0 0 0 1 0 0 0 0 0 0 1 2 0 0 10 0 1227.5264 B3KQ21;Q9NYH9;B3KX32;B4DSL9;B7Z9G4 B3KQ21 309 318 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 0.013634 82.426 2 1.2697 1.6256 NaN 1 Median 1.2697 1.6256 NaN 1 0 Median NaN NaN NaN 0 0 Median 3140200 1542700 1597400 3140200 1542700 1597400 0 0 0 1275 768 1311 4842;4843 7349;7350 7350 2 CCLTYCFNKPEDK GVFMASHFDRHYCGKCCLTYCFNKPEDK__ GKCCLTYCFNKPEDK_______________ K C C D K - 0 0 1 1 3 0 1 0 0 0 1 2 0 1 1 0 1 0 1 0 0 0 13 1 1733.7211 Q5RKT7;B2RDW1;P62979;Q8WYN9 Q5RKT7 144 156 RPS27A;HEL112 Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a yes no 2;3 2.4504E-42 238.92 7 0.76485 0.93483 6.8141 7 Median 0.76485 0.93483 6.8141 7 0 Median NaN NaN NaN 0 0 Median 266190000 142720000 123470000 266190000 142720000 123470000 0 0 0 1276 742 1312 4844;4845;4846;4847;4848;4849;4850 7351;7352;7353;7354;7355;7356;7357;7358;7359;7360;7361;7362;7363 7353 13 CCTPQLTR KKYRPKYCGSCVDGRCCTPQLTRTVKMRFR GSCVDGRCCTPQLTRTVKMRFRCEDGETFS R C C T R T 0 1 0 0 2 1 0 0 0 0 1 0 0 0 1 0 2 0 0 0 0 0 8 0 1034.4637 Q6FI18;O00622;B4DI61;Q53FA4;Q9UID7 Q6FI18 322 329 CYR61 Protein CYR61 yes no 2 0.0021963 84.568 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8578600 0 8578600 8578600 0 8578600 0 0 0 1277 1168 1313 4851 7364 7364 1 CDFTQMSQYFK EMTNEEKNIITNLSKCDFTQMSQYFKAQTE NLSKCDFTQMSQYFKAQTEARKQMSKEEKL K C D F K A 0 0 0 1 1 2 0 0 0 0 0 1 1 2 0 1 1 0 1 0 0 0 11 0 1453.6006 P11387;B9EG90 P11387 300 310 TOP1 DNA topoisomerase 1 yes no 2 6.1708E-05 130.41 6 2 0.75771 0.96379 14.682 7 Median 0.76412 0.96907 11.741 5 0 Median 0.52739 0.78923 3.294 2 0 Median 41397000 24406000 16991000 21946000 11462000 10484000 19451000 12945000 6506800 1278 1255 1314;1315 4852;4853;4854;4855;4856;4857;4858;4859 7365;7366;7367;7368;7369;7370;7371;7372;7373;7374 7365 498 10 CDLFIQEGAR KMGHTVTVWNRTAEKCDLFIQEGARLGRTP RTAEKCDLFIQEGARLGRTPAEVVSTCDIT K C D A R L 1 1 0 1 1 1 1 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 10 0 1207.5656 K7EMM8;D3DUE6;Q49A26 Q49A26 274 283 GLYR1;N-PAC Putative oxidoreductase GLYR1 no no 2 0.0053933 94.692 2 0.82789 1.1431 11.717 2 Median 0.82789 1.1431 11.717 2 0 Median NaN NaN NaN 0 0 Median 10659000 5937300 4721300 10659000 5937300 4721300 0 0 0 1279 982;1533 1316 4860;4861 7375;7376;7377 7375 3 CDTYATEFDLEAEEYVPLPK IYIEANSGAVKRQGRCDTYATEFDLEAEEY TEFDLEAEEYVPLPKGDVHKKKEIIQDVTL R C D P K G 2 0 0 2 1 0 4 0 0 0 2 1 0 1 2 0 2 0 2 1 0 0 20 0 2389.0672 B5BUB1;Q9Y265;E7ETR0;H7C4G5;H7C4I3 B5BUB1 206 225 RUVBL1 RuvB-like 1 yes no 2 1.8322E-19 163.27 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1467000 1467000 0 1467000 1467000 0 0 0 0 1280 896 1317 4862;4863 7378;7379 7378 2 CDVDIRK ESCGIHETTFNSIMKCDVDIRKDLYANTVL TTFNSIMKCDVDIRKDLYANTVLSGGTTMY K C D R K D 0 1 0 2 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 7 1 904.44365 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;Q96DE1;Q96FU6;A4UCT3;F1BXA6;A5GZ75;Q9UE89;P63261;B4E3A4;B4DVQ0;Q562R1;V9HVZ7 Q53GK6 285 291 PS1TP5BP1;ACTB;ACTG1;ACTBL2;HEL-176 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Beta-actin-like protein 2 no no 2 0.00014129 147.83 2 0.82663 1.0738 NaN 1 Median 0.82663 1.0738 NaN 1 0 Median NaN NaN NaN 0 0 Median 21144000 13149000 7994500 21144000 13149000 7994500 0 0 0 1281 1388;1420;1859;1547 1318 4864;4865 7380;7381;7382 7380 3 CEELLEK KFVIHCNSPVWGADKCEELLEKTVKNCLAL SPVWGADKCEELLEKTVKNCLALADDKKLK K C E E K T 0 0 0 0 1 0 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 7 0 919.43208 O75367;Q59FH0;B4DJC3 O75367 286 292 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2 0.0033322 163.34 6 2 0.85006 1.1112 9.1593 7 Median 0.85375 1.1125 5.6068 5 0 Median 0.60644 0.96616 0.45148 2 0 Median 538080000 292710000 245380000 452840000 242280000 210560000 85241000 50426000 34815000 1282 1198 1319 4866;4867;4868;4869;4870;4871;4872;4873 7383;7384;7385;7386;7387;7388;7389;7390;7391;7392;7393;7394 7386 12 CEETGNAYEDLSQK LSDQYKQEKLILLQRCEETGNAYEDLSQKY RCEETGNAYEDLSQKYKAAQEKNSKLECLL R C E Q K Y 1 0 1 1 1 1 3 1 0 0 1 1 0 0 0 1 1 0 1 0 0 0 14 0 1642.6781 P49454 P49454 1029 1042 CENPF Centromere protein F yes yes 2 4.7386E-05 76.655 1 0.95667 1.2209 NaN 1 Median 0.95667 1.2209 NaN 1 0 Median NaN NaN NaN 0 0 Median 2990700 1562500 1428300 2990700 1562500 1428300 0 0 0 1283 1351 1320 4874 7395;7396 7395 2 CEGINISGNFYR VAKQVLLGRKVVVVRCEGINISGNFYRNKL VVRCEGINISGNFYRNKLKYLAFLRKRMNT R C E Y R N 0 1 2 0 1 0 1 2 0 2 0 0 0 1 0 1 0 0 1 0 0 0 12 0 1428.6456 Q53H34;P40429;Q5QTS3;M0QYS1;B4DNC8;Q9BSQ6 Q53H34 38 49 RPL13A 60S ribosomal protein L13a no no 2 1.2979E-66 215.06 4 1 0.68849 0.93667 13.066 5 Median 0.6992 0.96191 4.1399 4 0 Median 0.50326 0.72676 NaN 1 0 Median 524860000 293280000 231580000 513270000 284870000 228400000 11588000 8412600 3175600 1284 1332;1712 1321 4875;4876;4877;4878;4879 7397;7398;7399;7400;7401;7402;7403;7404;7405 7402 9 CENPCHAGSCQPCPR CQLPCGQKLLCGQHKCENPCHAGSCQPCPR CENPCHAGSCQPCPRVSRQKCVCGKKVAER K C E P R V 1 1 1 0 4 1 1 1 1 0 0 0 0 0 3 1 0 0 0 0 0 0 15 0 1828.6862 B1Q2B0;Q6ZNB6 B1Q2B0 323 337 URCC5;NFXL1 NF-X1-type zinc finger protein NFXL1 yes no 3 0.022879 66.784 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 233830 233830 0 233830 233830 0 0 0 0 1285 679 1322 4880 7406 7406 1 CESAFLSK YARTDGKVFQFLNAKCESAFLSKRNPRQIN FQFLNAKCESAFLSKRNPRQINWTVLYRRK K C E S K R 1 0 0 0 1 0 1 0 0 0 1 1 0 1 0 2 0 0 0 0 0 0 8 0 940.43242 C9JXB8;C9JNW5;V9HW01;P83731 C9JXB8 36 43 RPL24;HEL-S-310 60S ribosomal protein L24 yes no 1;2 0.00013036 153.71 7 2 0.94168 1.207 28.421 8 Median 0.96448 1.2627 11.406 6 0 Median 0.43876 0.70254 3.5563 2 0 Median 1262600000 662110000 600500000 1152800000 586320000 566470000 109820000 75788000 34032000 1286 942 1323 4881;4882;4883;4884;4885;4886;4887;4888;4889 7407;7408;7409;7410;7411;7412;7413;7414;7415;7416;7417;7418 7411 12 CEVSSLAGALGK LFMLHGKSLTVIPYKCEVSSLAGALGKLKH PYKCEVSSLAGALGKLKHSQDPGTHVVSHF K C E G K L 2 0 0 0 1 0 1 2 0 0 2 1 0 0 0 2 0 0 0 1 0 0 12 0 1190.5965 Q9H8H0 Q9H8H0 333 344 NOL11 Nucleolar protein 11 yes yes 2 0.021327 53.597 1 0.92771 1.1777 NaN 1 Median 0.92771 1.1777 NaN 1 0 Median NaN NaN NaN 0 0 Median 10214000 4846100 5367600 10214000 4846100 5367600 0 0 0 1287 1743 1324 4890 7419 7419 0 CFEISDADTK RYVRGRFLGKGGFAKCFEISDADTKEVFAG GGFAKCFEISDADTKEVFAGKIVPKSLLLK K C F T K E 1 0 0 2 1 0 1 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 10 0 1184.502 B2R841;P53350;Q58A51;I3L387 B2R841 67 76 PLK1;Plk-1 delta Serine/threonine-protein kinase PLK;Serine/threonine-protein kinase PLK1 yes no 2 0.0058672 60.398 2 0.85772 1.074 NaN 1 Median 0.85772 1.074 NaN 1 0 Median NaN NaN NaN 0 0 Median 6590900 4596700 1994200 6590900 4596700 1994200 0 0 0 1288 714 1325 4891;4892 7420;7421;7422 7421 3 CFIVGADNVGSK NYFLKIIQLLDDYPKCFIVGADNVGSKQMQ YPKCFIVGADNVGSKQMQQIRMSLRGKAVV K C F S K Q 1 0 1 1 1 0 0 2 0 1 0 1 0 1 0 1 0 0 0 2 0 0 12 0 1265.6074 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VWS0;Q53HK9;F8VU65;F8VZS0;Q6NSF2;G3V210;Q8NHW5;F8VQY6;F8VPE8;F8VRK7;F8VS58;F8VWV4 Q53HW2 27 38 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 0.00038913 75.509 2 1 0.77508 0.98903 NaN 1 Median 0.77508 0.98903 NaN 1 0 Median NaN NaN NaN 0 0 Median 18371000 12002000 6368800 14787000 8417900 6368800 3584100 3584100 0 1289 281 1326 4893;4894;4895 7423;7424;7425;7426 7425 4 CGDGGQLVLCDR AKGEGKRQSEDECFRCGDGGQLVLCDRKFC CFRCGDGGQLVLCDRKFCTKAYHLSCLGLG R C G D R K 0 1 0 2 2 1 0 3 0 0 2 0 0 0 0 0 0 0 0 1 0 0 12 0 1348.5864 O96028 O96028 1245 1256 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 2 0.0018007 69.01 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4617400 4617400 0 4617400 4617400 0 0 0 0 1290 1228 1327 4896 7427 7427 1 CGFCHVGEEENEAR DRSPHRSSPSDTRPKCGFCHVGEEENEARG KCGFCHVGEEENEARGKLHIFNAKKAAAHY K C G A R G 1 1 1 0 2 0 4 2 1 0 0 0 0 1 0 0 0 0 0 1 0 0 14 0 1692.6621 Q8IWS0;A0A0D9SGE8;Q5JRC6 Q8IWS0 212 225 PHF6 PHD finger protein 6 yes no 2;3 1.2692E-07 128.88 5 0.9061 1.2226 32.614 4 Median 0.9061 1.2226 32.614 4 0 Median NaN NaN NaN 0 0 Median 34408000 16391000 18017000 34408000 16391000 18017000 0 0 0 1291 1625 1328 4897;4898;4899;4900;4901 7428;7429;7430;7431;7432;7433;7434 7433 7 CGQCPGCQVPEDCGVCTNCLDKPK APQEPPVKKGRRSRRCGQCPGCQVPEDCGV PEDCGVCTNCLDKPKFGGRNIKKQCCKMRK R C G P K F 0 0 1 2 6 2 1 3 0 0 1 2 0 0 3 0 1 0 0 2 0 0 24 1 2838.1322 Q03164;E9PR05;Q9HB80;H7C5W4 Q03164 1155 1178 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 3 0.0034739 94.234 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4006200 1592700 2413600 4006200 1592700 2413600 0 0 0 1292 1438 1329 4902;4903 7435;7436 7435 2 CGSGPVHISGQHLVAVEEDAESEDEEEEDVK LGGFEITPPVVLRLKCGSGPVHISGQHLVA EEDAESEDEEEEDVKLLSISGKRSAPGGGS K C G V K L 2 0 0 3 1 1 8 3 2 1 1 1 0 0 1 3 0 0 0 4 0 0 31 0 3379.4634 A0A0S2Z4G7;A0A0S2Z491;P06748;A0A140VJQ2;A4ZU86;Q9BTI9;E5RI98;Q9NX34 A0A0S2Z4G7 104 134 NPM1 Nucleophosmin no no 4 9.2702E-44 121.59 4 2 0.70698 0.89196 8.6459 4 Median 0.70698 0.89196 8.6459 4 0 Median NaN NaN NaN 0 0 Median 184210000 97517000 86691000 171750000 97517000 74237000 12454000 0 12454000 1293 462;1765 1330 4904;4905;4906;4907;4908;4909 7437;7438;7439;7440;7441;7442;7443;7444;7445;7446;7447;7448;7449;7450 7447 14 CGSVLVR KIGKPHTVPCKVTGRCGSVLVRLIPAPRGT VPCKVTGRCGSVLVRLIPAPRGTGIVSAPV R C G V R L 0 1 0 0 1 0 0 1 0 0 1 0 0 0 0 1 0 0 0 2 0 0 7 0 789.41671 P15880;Q8J014;Q8N5L9;Q6IPX5;Q3KQT6;H0YEN5;E9PQD7;I3L404;E9PMM9;E9PM36 P15880 188 194 RPS2;rps2 40S ribosomal protein S2 yes no 2 0.0081169 132.94 1 1 0.57554 0.78264 27.787 2 Median 0.71344 0.95256 NaN 1 0 Median 0.4643 0.64303 NaN 1 0 Median 38366000 23027000 15339000 32522000 19137000 13384000 5844300 3889900 1954400 1294 1269 1331 4910;4911 7451;7452;7453 7452 3 CGVCEVCQQPECGK KDDREDKENAFKRRRCGVCEVCQQPECGKC RCGVCEVCQQPECGKCKACKDMVKFGGSGR R C G G K C 0 0 0 0 4 2 2 2 0 0 0 1 0 0 1 0 0 0 0 2 0 0 14 0 1709.663 A0A024R7E3;P26358;Q59FP7;I6L9H2 A0A024R7E3 715 728 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 no no 2 2.3608E-73 246.08 6 0.41776 0.53206 22.755 2 Median 0.41776 0.53206 22.755 2 0 Median NaN NaN NaN 0 0 Median 9264100 7330600 1933600 9264100 7330600 1933600 0 0 0 1295 176;1129 1332 4912;4913;4914;4915;4916;4917 7454;7455;7456;7457;7458;7459;7460;7461;7462;7463 7456 10 CGVQSFYTPR YTFNTHKAQHTFCKRCGVQSFYTPRSNPGG TFCKRCGVQSFYTPRSNPGGFGIAPHCLDE R C G P R S 0 1 0 0 1 1 0 1 0 0 0 0 0 1 1 1 1 0 1 1 0 0 10 0 1213.555 Q7Z7K6 Q7Z7K6 219 228 CENPV Centromere protein V yes yes 2 2.6501E-05 106.68 3 1 0.93681 1.2763 24.984 4 Median 1.0211 1.4043 13.085 3 0 Median 0.61691 0.85549 NaN 1 0 Median 26510000 14343000 12167000 20429000 10536000 9893300 6081300 3807200 2274100 1296 1619 1333 4918;4919;4920;4921 7464;7465;7466;7467;7468;7469 7469 6 CHTPPLYR LREYKVVGRCLPTPKCHTPPLYRMRIFAPN RCLPTPKCHTPPLYRMRIFAPNHVVAKSRF K C H Y R M 0 1 0 0 1 0 0 0 1 0 1 0 0 0 2 0 1 0 1 0 0 0 8 0 1042.5018 Q02543;B4DM94;M0R117;B4DM74;B4DUV3;Q53HD3;Q32XH3 Q02543 22 29 RPL18A 60S ribosomal protein L18a yes no 2;3 0.00047933 120.52 7 2 0.65593 0.94196 3.9421 9 Median 0.69009 0.94196 3.8738 7 0 Median 0.61145 0.93945 5.6053 2 0 Median 567120000 329670000 237450000 525410000 304190000 221220000 41715000 25486000 16230000 1297 1436 1334 4922;4923;4924;4925;4926;4927;4928;4929;4930 7470;7471;7472;7473;7474;7475;7476;7477;7478;7479;7480;7481;7482;7483;7484;7485;7486 7480 17 CHVQTIQLCR LSMCFLFSTFPRTGKCHVQTIQLCRRLTVE PRTGKCHVQTIQLCRRLTVEFMHYIIAARA K C H C R R 0 1 0 0 2 2 0 0 1 1 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1313.6333 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6;H7BYY8 B5MCF9 153 162 PES1 Pescadillo homolog yes no 2 0.00054918 104.01 2 0.8565 1.1692 0.61156 2 Median 0.8565 1.1692 0.61156 2 0 Median NaN NaN NaN 0 0 Median 18371000 9908400 8462900 18371000 9908400 8462900 0 0 0 1298 735 1335 4931;4932 7487;7488;7489 7489 3 CIAFGNEGVYVAAVR KELSFVLDYINQSPKCIAFGNEGVYVAAVR CIAFGNEGVYVAAVREFYLSVYFFKKKTTS K C I V R E 3 1 1 0 1 0 1 2 0 1 0 0 0 1 0 0 0 0 1 3 0 0 15 0 1624.8032 A8K330;Q8IWA0 A8K330 160 174 WDR75 WD repeat-containing protein 75 yes no 2 2.5229E-07 90.05 1 0.93536 1.2356 NaN 1 Median 0.93536 1.2356 NaN 1 0 Median NaN NaN NaN 0 0 Median 9031200 3480400 5550900 9031200 3480400 5550900 0 0 0 1299 588 1336 4933 7490;7491 7491 2 CIAPETLR KRRYTIIPLNKISARCIAPETLRVAQNLVG LNKISARCIAPETLRVAQNLVGPDNVHVAL R C I L R V 1 1 0 0 1 0 1 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 8 0 958.4906 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 585 592 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.013202 71.342 2 2 0.6879 0.9287 NaN 1 Median 0.6879 0.9287 NaN 1 0 Median NaN NaN NaN 0 0 Median 68420000 32505000 35915000 53096000 17182000 35915000 15323000 15323000 0 1300 50 1337 4934;4935;4936;4937 7492;7493;7494;7495 7493 4 CIGPGCCHVAQPDSVYCSNDCILK LKIFQPVIEAPGASKCIGPGCCHVAQPDSV AQPDSVYCSNDCILKHAAATMKFLSSGKEQ K C I L K H 1 0 1 2 5 1 0 2 1 2 1 1 0 0 2 2 0 0 1 2 0 0 24 0 2809.175 Q9BTC0 Q9BTC0 397 420 DIDO1 Death-inducer obliterator 1 yes yes 3 1.997E-07 90.729 3 1.1092 1.4092 61.01 2 Median 1.1092 1.4092 61.01 2 0 Median NaN NaN NaN 0 0 Median 6291700 3392900 2898800 6291700 3392900 2898800 0 0 0 1301 1713 1338 4938;4939;4940 7496;7497;7498;7499;7500 7498 5 CIIPNHEK KLMATLRNTNPNFVRCIIPNHEKKAGKLDP TNPNFVRCIIPNHEKKAGKLDPHLVLDQLR R C I E K K 0 0 1 0 1 0 1 0 1 2 0 1 0 0 1 0 0 0 0 0 0 0 8 0 1009.5015 A0A024R1N1;P35579;Q86XU5;B4E3S1;A0A0U4BW16;P35580 A0A024R1N1 671 678 MYH9;MYH10 Myosin-9;Myosin-10 no no 2;3 0.00078678 110.12 3 1.0027 1.2681 0.08547 2 Median 1.0027 1.2681 0.08547 2 0 Median NaN NaN NaN 0 0 Median 96810000 56648000 40162000 96810000 56648000 40162000 0 0 0 1302 61;490;1320 1339 4941;4942;4943 7501;7502;7503;7504 7504 4 CIQCGQYLDDPDLK ARAKTVMNSKTHPPKCIQCGQYLDDPDLKY KCIQCGQYLDDPDLKYGQHPPDAVDEPQML K C I L K Y 0 0 0 3 2 2 0 1 0 1 2 1 0 0 1 0 0 0 1 0 0 0 14 0 1723.7546 A0A024R7E3;P26358;Q59FP7;I6L9H2 A0A024R7E3 415 428 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 no no 2 0.0020467 57.348 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1926500 1926500 0 1926500 1926500 0 0 0 0 1303 176;1129 1340 4944 7505 7505 1 CITDPQTGLCLLPLK PNTEENLTYLQLMERCITDPQTGLCLLPLK CITDPQTGLCLLPLKEKKRERKTSSKSSVR R C I L K E 0 0 0 1 2 1 0 1 0 1 4 1 0 0 2 0 2 0 0 0 0 0 15 0 1727.895 Q15149;D3DWL0;Q96IE3 Q15149 4245 4259 PLEC;PLEC1 Plectin yes no 2 3.3701E-07 118.61 4 0.52443 0.66713 4.2172 3 Median 0.52443 0.66713 4.2172 3 0 Median NaN NaN NaN 0 0 Median 24421000 16568000 7852700 24421000 16568000 7852700 0 0 0 1304 1507 1341 4945;4946;4947;4948 7506;7507;7508;7509;7510;7511;7512 7510 7 CITDTLQELVNQSK IVGLQAFQERLNSYKCITDTLQELVNQSKA KCITDTLQELVNQSKAAPQSPSVPKKPGPP K C I S K A 0 0 1 1 1 2 1 0 0 1 2 1 0 0 0 1 2 0 0 1 0 0 14 0 1647.8138 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 936 949 NUP155 Nuclear pore complex protein Nup155 yes no 2 1.5348E-05 120.86 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1305 29 1342 4949 7513 7513 1 CIYFEAK LFVINEVCEMKNCNKCIYFEAKKKQDLYMW CEMKNCNKCIYFEAKKKQDLYMWLSNSPHG K C I A K K 1 0 0 0 1 0 1 0 0 1 0 1 0 1 0 0 0 0 1 0 0 0 7 0 929.43169 Q8TDN6;A0JLQ5;B4E0B8;Q9NUW4 Q8TDN6 115 121 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 2 0.01895 100.74 4 1 0.98401 1.2347 23.262 5 Median 0.99614 1.2524 7.7451 4 0 Median 0.52502 0.74131 NaN 1 0 Median 196440000 97485000 98950000 190340000 93944000 96399000 6093400 3541800 2551600 1306 1659 1343 4950;4951;4952;4953;4954 7514;7515;7516;7517;7518 7516 5 CLASGQILYEGLEYCEER VLSLHLLQLAFGNRKCLASGQILYEGLEYC SGQILYEGLEYCEERYTLDLTGGMFPLRGQ K C L E R Y 1 1 0 0 2 1 4 2 0 1 3 0 0 0 0 1 0 0 2 0 0 0 18 0 2188.9769 Q8WYP5 Q8WYP5 313 330 AHCTF1 Protein ELYS yes yes 2 1.9048E-08 125.61 5 0.91856 1.2781 33.584 4 Median 0.91856 1.2781 33.584 4 0 Median NaN NaN NaN 0 0 Median 10891000 5930100 4961200 10891000 5930100 4961200 0 0 0 1307 1670 1344 4955;4956;4957;4958;4959 7519;7520;7521;7522;7523;7524;7525;7526 7522 8 CLATGPGIASTVK SPYRIRATQTGDASKCLATGPGIASTVKTG SKCLATGPGIASTVKTGEEVGFVVDAKTAG K C L V K T 2 0 0 0 1 0 0 2 0 1 1 1 0 0 1 1 2 0 0 1 0 0 13 0 1273.67 O75369;A0A024R321;Q68CT4;E7EN95 O75369 1617 1629 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.0066649 52.79 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1303100 1303100 0 1303100 1303100 0 0 0 0 1308 1199 1345 4960 7527 7527 1 CLATGPGIASTVKTGEEVGFVVDAK SPYRIRATQTGDASKCLATGPGIASTVKTG TVKTGEEVGFVVDAKTAGKGKVTCTVLTPD K C L A K T 3 0 0 1 1 0 2 4 0 1 1 2 0 1 1 1 3 0 0 4 0 0 25 1 2505.2785 O75369;A0A024R321;Q68CT4;E7EN95 O75369 1617 1641 FLNB;DKFZp686A1668 Filamin-B yes no 3 0.029693 32.337 1 0.61965 0.75809 NaN 1 Median 0.61965 0.75809 NaN 1 0 Median NaN NaN NaN 0 0 Median 18540000 11099000 7441800 18540000 11099000 7441800 0 0 0 1309 1199 1346 4961 7528;7529 7528 2 CLDLYLCPR AVPTYGRFIQERFERCLDLYLCPRQRKMRV QERFERCLDLYLCPRQRKMRVNVDPEDLIP R C L P R Q 0 1 0 1 2 0 0 0 0 0 3 0 0 0 1 0 0 0 1 0 0 0 9 0 1208.5682 B2RDN4;Q14137;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 B2RDN4 367 375 BOP1 Ribosome biogenesis protein BOP1 yes no 2 0.019129 86.011 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2427300 2427300 0 2427300 2427300 0 0 0 0 1310 738 1347 4962 7530 7530 1 CLILCYELLK KEVHIEKNDAETLQKCLILCYELLKQMSIS ETLQKCLILCYELLKQMSISTGLSATMNGI K C L L K Q 0 0 0 0 2 0 1 0 0 1 4 1 0 0 0 0 0 0 1 0 0 0 10 0 1323.6931 H0Y9Z8;Q9BPX3;Q6NUR1 Q9BPX3 560 569 NCAPG Condensin complex subunit 3 no no 2 0.00079259 81.296 2 0.65818 0.83263 8.2574 2 Median 0.65818 0.83263 8.2574 2 0 Median NaN NaN NaN 0 0 Median 15181000 9621600 5559000 15181000 9621600 5559000 0 0 0 1311 1706;1096 1348 4963;4964 7531;7532;7533 7532 3 CLLAASPENEAGGLK GCAFAQFMTQEAAQKCLLAASPENEAGGLK CLLAASPENEAGGLKLDGRQLKVDLAVTRD K C L L K L 3 0 1 0 1 0 2 2 0 0 3 1 0 0 1 1 0 0 0 0 0 0 15 0 1528.7555 A0A024R753;Q9NW13;B4DJ90 A0A024R753 392 406 RBM28 RNA-binding protein 28 yes no 2 4.9171E-07 106.29 5 1.1719 1.4795 8.9164 3 Median 1.1719 1.4795 8.9164 3 0 Median NaN NaN NaN 0 0 Median 20641000 9353100 11288000 20641000 9353100 11288000 0 0 0 1312 169 1349 4965;4966;4967;4968;4969 7534;7535;7536;7537;7538;7539;7540;7541;7542 7540 9 CLLIDYNPDSQELDFR PSINVHKVNLNTIKRCLLIDYNPDSQELDF LLIDYNPDSQELDFRHYSIKVVPVGASRGM R C L F R H 0 1 1 3 1 1 1 0 0 1 3 0 0 1 1 1 0 0 1 0 0 0 16 0 1996.92 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;C9J3W3 A0A0A6YYI3 180 195 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 1.7457E-19 165.7 3 0.71055 0.97933 6.9839 2 Median 0.71055 0.97933 6.9839 2 0 Median NaN NaN NaN 0 0 Median 15486000 7656000 7830000 15486000 7656000 7830000 0 0 0 1313 408 1350 4970;4971;4972 7543;7544;7545;7546;7547 7543 5 CLQNPSSDIR GGGQLPAKLSSLFVKCLQNPSSDIRLVAEK SLFVKCLQNPSSDIRLVAEKMIWWANKDPL K C L I R L 0 1 1 1 1 1 0 0 0 1 1 0 0 0 1 2 0 0 0 0 0 0 10 0 1188.5557 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2558 2567 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.021171 53.775 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2354300 2354300 0 2354300 2354300 0 0 0 0 1314 1000 1351 4973 7548 7548 1 CLYASVLTAQPR AIHRGGGQIIPTARRCLYASVLTAQPRLME ARRCLYASVLTAQPRLMEPIYLVEIQCPEQ R C L P R L 2 1 0 0 1 1 0 0 0 0 2 0 0 0 1 1 1 0 1 1 0 0 12 0 1377.7075 P13639;Q8TA90;B4DPU3 P13639 728 739 EEF2 Elongation factor 2 yes no 2 0.0013779 75.294 2 1 0.41621 0.54417 NaN 1 Median 0.41621 0.54417 NaN 1 0 Median NaN NaN NaN 0 0 Median 14545000 11722000 2823600 14545000 11722000 2823600 0 0 0 1315 1264 1352 4974;4975;4976 7549;7550;7551 7551 3 CMPAPEEIVEELPASK GGGKDGSVTGTKRLRCMPAPEEIVEELPAS MPAPEEIVEELPASKKQRVAPRARGKSSEP R C M S K K 2 0 0 0 1 0 4 0 0 1 1 1 1 0 3 1 0 0 0 1 0 0 16 0 1798.8481 P46013 P46013 3014 3029 MKI67 Antigen KI-67 yes yes 2 0.0053912 66.326 1 0.93287 1.1645 NaN 1 Median 0.93287 1.1645 NaN 1 0 Median NaN NaN NaN 0 0 Median 1068700 492510 576160 1068700 492510 576160 0 0 0 1316 1342 1353 4977 7552 7552 569 1 CMQLTDFILK DGPCTQVRRQAMPFKCMQLTDFILKFPHSA AMPFKCMQLTDFILKFPHSAHQKYVRQAWQ K C M L K F 0 0 0 1 1 1 0 0 0 1 2 1 1 1 0 0 1 0 0 0 0 0 10 0 1267.6305 A8K3Q9;E7EPB3;A0PJ62;B7Z6S8;A8K7N0;Q6IPH7;P50914 A8K3Q9 54 63 RPL14 60S ribosomal protein L14 no no 2 0.0010758 102.07 3 0.65369 0.83998 4.6234 3 Median 0.65369 0.83998 4.6234 3 0 Median NaN NaN NaN 0 0 Median 16271000 9613100 6658100 16271000 9613100 6658100 0 0 0 1317 596;532 1354 4978;4979;4980 7553;7554;7555;7556 7555 4 CNCKPTDENPCGFDSECLNR GKVQIYTADISEIPKCNCKPTDENPCGFDS TDENPCGFDSECLNRMLMFECHPQVCPAGE K C N N R M 0 1 3 2 4 0 2 1 0 0 1 1 0 1 2 1 1 0 0 0 0 0 20 1 2471.9563 O96028 O96028 1016 1035 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 3 3.9282E-20 149.74 4 0.89487 1.17 13.986 4 Median 0.89487 1.17 13.986 4 0 Median NaN NaN NaN 0 0 Median 24908000 12975000 11933000 24908000 12975000 11933000 0 0 0 1318 1228 1355 4981;4982;4983;4984 7557;7558;7559;7560;7561;7562;7563;7564;7565 7558 9 CNELQDIEK TPEEVIEYSAVFWERCNELQDIEKIMAQIE AVFWERCNELQDIEKIMAQIERGEARIQRR R C N E K I 0 0 1 1 1 1 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 9 0 1147.5179 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370 O60264 891 899 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 2 2.3389E-05 158.76 4 2.3403 2.8808 10.581 3 Median 2.3403 2.8808 10.581 3 0 Median NaN NaN NaN 0 0 Median 55692000 17853000 37839000 55692000 17853000 37839000 0 0 0 1319 1189 1356 4985;4986;4987;4988 7566;7567;7568;7569;7570;7571;7572 7568 7 CNNVLYIR IDGALSGHLGEVLIRCNNVLYIRGVEEEEE LGEVLIRCNNVLYIRGVEEEEEDGEMRE__ R C N I R G 0 1 2 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 8 0 1050.528 P62306 P62306 66 73 SNRPF Small nuclear ribonucleoprotein F yes yes 2 0.000353 121.29 2 0.73105 0.99714 NaN 1 Median 0.73105 0.99714 NaN 1 0 Median NaN NaN NaN 0 0 Median 16308000 12022000 4285900 16308000 12022000 4285900 0 0 0 1320 1406 1357 4989;4990 7573;7574 7573 2 CNTLITLIER DWFLKSRTAMELQRRCNTLITLIERENMEL ELQRRCNTLITLIERENMELEEKEKAEKKK R C N E R E 0 1 1 0 1 0 1 0 0 2 2 0 0 0 0 0 2 0 0 0 0 0 10 0 1231.6595 O60264;B7ZAX9;B4DZC0 O60264 1001 1010 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 0.00020698 126.31 5 2.7862 3.858 106.4 3 Plateau 2.7862 3.858 106.4 3 0 Plateau NaN NaN NaN 0 0 Median 24324000 7032900 17291000 24324000 7032900 17291000 0 0 0 1321 1189 1358 4991;4992;4993;4994;4995 7575;7576;7577;7578;7579 7575 5 CNYNCPHANEAAFPFYR GETFSKNVMMIQSCKCNYNCPHANEAAFPF YNCPHANEAAFPFYRLFNDIHKFRD_____ K C N Y R L 3 1 3 0 2 0 1 0 1 0 0 0 0 2 2 0 0 0 2 0 0 0 17 0 2129.8836 Q6FI18;O00622;B4DI61;Q53FA4;Q9UID7 Q6FI18 355 371 CYR61 Protein CYR61 yes no 3 8.2475E-05 91.592 3 1.6854 2.3132 4.2124 3 Median 1.6854 2.3132 4.2124 3 0 Median NaN NaN NaN 0 0 Median 33851000 13001000 20850000 33851000 13001000 20850000 0 0 0 1322 1168 1359 4996;4997;4998 7580;7581;7582 7581 3 CPEALFQPSFLGMESCGIHETTFNSIMK LPDGQVITIGNERFRCPEALFQPSFLGMES ESCGIHETTFNSIMKCDVDIRKDLYANTVL R C P M K C 1 0 1 0 2 1 3 2 1 2 2 1 2 3 2 3 2 0 0 0 0 0 28 0 3230.4545 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;Q96DE1;Q96FU6;A4UCT3;F1BXA6;A5GZ75;P63261;B4E3A4;B4DVQ0;V9HVZ7 Q53GK6 257 284 PS1TP5BP1;ACTB;ACTG1;HEL-176 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 3 0.00069923 63.906 3 0.68594 0.85465 9.9432 2 Median 0.68594 0.85465 9.9432 2 0 Median NaN NaN NaN 0 0 Median 10300000 5982800 4317300 10300000 5982800 4317300 0 0 0 1323 1388;1420;1859 1360;1361;1362 4999;5000;5001 7583;7584;7585 7584 601;602 3 CPENAFFLDHVR IRRLIRGFVLRHAPRCPENAFFLDHVRTSF APRCPENAFFLDHVRTSFLLNLRRQLPQNV R C P V R T 1 1 1 1 1 0 1 0 1 0 1 0 0 2 1 0 0 0 0 1 0 0 12 0 1503.6929 F5H6E2;B7Z3E5;O00159;D3DTH7 F5H6E2 778 789 MYO1C Unconventional myosin-Ic yes no 3 0.014596 29.689 1 0.6767 0.88531 NaN 1 Median 0.6767 0.88531 NaN 1 0 Median NaN NaN NaN 0 0 Median 7369300 3691000 3678300 7369300 3691000 3678300 0 0 0 1324 905 1363 5002 7586 7586 1 CPLCTYETR ELHTDGNNIYVKFYKCPLCTYETRRKRDVI YVKFYKCPLCTYETRRKRDVIRHITVVHKK K C P T R R 0 1 0 0 2 0 1 0 0 0 1 0 0 0 1 0 2 0 1 0 0 0 9 0 1198.5111 Q2TB10;B7Z4V7 Q2TB10 521 529 ZNF800 Zinc finger protein 800 yes no 2 0.021607 51.346 1 1.0183 1.3733 NaN 1 Median 1.0183 1.3733 NaN 1 0 Median NaN NaN NaN 0 0 Median 5646700 3025700 2621100 5646700 3025700 2621100 0 0 0 1325 1530 1364 5003 7587 7587 1 CPLHSCVSCHASNPSNPRPSK VKKYPLTVFESRGFRCPLHSCVSCHASNPS VSCHASNPSNPRPSKGKMMRCVRCPVAYHS R C P S K G 1 1 2 0 3 0 0 0 2 0 1 1 0 0 4 5 0 0 0 1 0 0 21 1 2391.0631 O96028 O96028 759 779 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 3 0.0033723 47.32 1 0.92296 1.2383 NaN 1 Median 0.92296 1.2383 NaN 1 0 Median NaN NaN NaN 0 0 Median 3373500 1901900 1471600 3373500 1901900 1471600 0 0 0 1326 1228 1365 5004 7588;7589 7588 2 CPNLTYLNLSGNK SDNIISGGLEVLAEKCPNLTYLNLSGNKIK EKCPNLTYLNLSGNKIKDLSTVEALQNLKN K C P N K I 0 0 3 0 1 0 0 1 0 0 3 1 0 0 1 1 1 0 1 0 0 0 13 0 1492.7344 Q53F20;Q9BTT0;E9PPH5;Q5TB19;B4E0D5;E9PLC4 Q53F20 87 99 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 2 0.0096518 48.741 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3816900 3816900 0 3816900 3816900 0 0 0 0 1327 1538 1366 5005 7590 7590 1 CPQELSRDPSGTK MKSIVGEIVREIGQKCPQELSRDPSGTKGF QKCPQELSRDPSGTKGFAAFLTELAERVPA K C P T K G 0 1 0 1 1 1 1 1 0 0 1 1 0 0 2 2 1 0 0 0 0 0 13 1 1473.6882 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00;A0PJ76 B3KMS0 286 298 NCAPD2 Condensin complex subunit 1 yes no 2;3 1.0801E-11 178.95 7 0.73433 0.96295 15.543 6 Median 0.73433 0.96295 15.543 6 0 Median NaN NaN NaN 0 0 Median 36948000 22099000 14849000 36948000 22099000 14849000 0 0 0 1328 757 1367 5006;5007;5008;5009;5010;5011;5012 7591;7592;7593;7594;7595;7596;7597;7598;7599;7600;7601 7595 11 CPQIVIAFYEER TDEADLVLAKEANVKCPQIVIAFYEERLTW NVKCPQIVIAFYEERLTWHAYPEDAENKEK K C P E R L 1 1 0 0 1 1 2 0 0 2 0 0 0 1 1 0 0 0 1 1 0 0 12 0 1523.7442 V9HWG0;P45973;Q6I9T7;A4D177;Q13185 V9HWG0 160 171 HEL25;CBX5;CBX3 Chromobox protein homolog 5;Chromobox protein homolog 3 no no 2 5.6248E-12 136.48 5 2 0.77393 1.0203 30.899 4 Linear 0.62628 0.86022 6.2576 3 0 Plateau 0.28735 0.45101 NaN 1 0 Median 231660000 148600000 83052000 197680000 121160000 76523000 33974000 27446000 6528200 1329 1341;547 1368 5013;5014;5015;5016;5017;5018;5019 7602;7603;7604;7605;7606;7607;7608;7609;7610;7611;7612;7613;7614;7615 7611 14 CPQVEEAIVQSGQK VVLEVLDARDPLGCRCPQVEEAIVQSGQKK RCPQVEEAIVQSGQKKLVLILNKSDLVPKE R C P Q K K 1 0 0 0 1 3 2 1 0 1 0 1 0 0 1 1 0 0 0 2 0 0 14 0 1571.7614 A0A024R2Z6;Q9BVP2 A0A024R2Z6 146 159 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 1.5751E-77 218.02 4 2 0.63461 0.82228 23.612 5 Median 0.65324 0.82361 15.605 4 0 Median 0.41003 0.57214 NaN 1 0 Median 54173000 33657000 20517000 45340000 26451000 18889000 8833100 7205900 1627200 1330 95 1369 5020;5021;5022;5023;5024;5025 7616;7617;7618;7619;7620;7621;7622;7623;7624 7621 9 CPQVVISFYEER SDEADLVPAKEANVKCPQVVISFYEERLTW NVKCPQVVISFYEERLTWHSY_________ K C P E R L 0 1 0 0 1 1 2 0 0 1 0 0 0 1 1 1 0 0 1 2 0 0 12 0 1525.7235 J3KS05;Q6IBN6;P83916;Q9Y654 J3KS05 156 167 CBX1 Chromobox protein homolog 1 yes no 2 5.4261E-05 100.88 4 0.90477 1.2102 12.61 2 Median 0.90477 1.2102 12.61 2 0 Median NaN NaN NaN 0 0 Median 23106000 8721500 14385000 23106000 8721500 14385000 0 0 0 1331 1137 1370 5026;5027;5028;5029 7625;7626;7627;7628;7629 7628 5 CPSIAAAIAAVNALHGR IYVDKNSAQGNVYVKCPSIAAAIAAVNALH SIAAAIAAVNALHGRWFAGKMITAAYVPLP K C P G R W 6 1 1 0 1 0 0 1 1 2 1 0 0 0 1 1 0 0 0 1 0 0 17 0 1690.8937 B4DRA0;B4DLM0;B3KWX7;Q68DD9;B4E1M7;Q14498;B7Z4L7;Q6N037;E1P5S2;Q7Z3L0;Q6MZY7 B4DRA0 450 466 DKFZp781C0423;RBM39;DKFZp686A11192;RNPC2;DKFZp781I1140;DKFZp686C17209 RNA-binding protein 39 yes no 3 5.0539E-06 112.62 3 0.31677 0.43783 33.117 2 Median 0.31677 0.43783 33.117 2 0 Median NaN NaN NaN 0 0 Median 10056000 6097400 3958700 10056000 6097400 3958700 0 0 0 1332 786 1371 5030;5031;5032 7630;7631;7632 7630 1 CPTDELSLTNCAVVNEK ______________________________ TDELSLTNCAVVNEKDFQSGQHVIVRTSPN R C P E K D 1 0 2 1 2 0 2 0 0 0 2 1 0 0 1 1 2 0 0 2 0 0 17 0 1948.887 B4DGR3;I3L0N3;B7Z5J7;P46459;I3L0L3;I3L338;I3L4Q9 B4DGR3 11 27 NSF Vesicle-fusing ATPase yes no 2 0.0064364 92.65 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1333 805 1372 5033 7633 7633 1 CQLEINFNTLQTK RDYRRVHKPPKVQEKCQLEINFNTLQTKLR EKCQLEINFNTLQTKLRLSNRPAFMPSEGK K C Q T K L 0 0 2 0 1 2 1 0 0 1 2 1 0 1 0 0 2 0 0 0 0 0 13 0 1607.7977 A0A0S2Z3G9;O43707;Q96BG6;B4E337;B4DSX0;K7EJH8;B2R8Y4;B4DZQ2;A0A087WSZ2;Q08043;Q4VAM3;B7Z4P6;Q59FD9;B7Z4K1;F6THM6;H9KV75;B7Z565;A0A024R694;P12814;Q86TX4;B7Z2N5;P35609 A0A0S2Z3G9 351 363 ACTN4;ACTN3;ACTN2;ACTN1 Alpha-actinin-4;Alpha-actinin-3;Alpha-actinin-1;Alpha-actinin-2 no no 2 4.4888E-17 169.65 4 0.82844 1.0612 17.984 2 Median 0.82844 1.0612 17.984 2 0 Median NaN NaN NaN 0 0 Median 10151000 6561900 3588800 10151000 6561900 3588800 0 0 0 1334 451;157 1373 5034;5035;5036;5037 7634;7635;7636;7637;7638 7634 5 CQNILQGNFKPDFYLK ILNQGQLASIFLDQKCQNILQGNFKPDFYL QNILQGNFKPDFYLKYIQKDLRLAIALGDA K C Q L K Y 0 0 2 1 1 2 0 1 0 1 2 2 0 2 1 0 0 0 1 0 0 0 16 1 1983.9877 K7EMM8;D3DUE6;Q49A26;D3DUE7 Q49A26 457 472 GLYR1;N-PAC Putative oxidoreductase GLYR1 no no 3 9.0825E-09 118.16 4 0.83486 1.0287 11.339 3 Median 0.83486 1.0287 11.339 3 0 Median NaN NaN NaN 0 0 Median 49215000 30066000 19149000 49215000 30066000 19149000 0 0 0 1335 982;1533 1374 5038;5039;5040;5041 7639;7640;7641;7642;7643;7644 7640 6 CQNIYLTTGYAGSK KNKKLLTDGYACEVRCQNIYLTTGYAGSKN RCQNIYLTTGYAGSKNGSRDRATELAVKLL R C Q S K N 1 0 1 0 1 1 0 2 0 1 1 1 0 0 0 1 2 0 2 0 0 0 14 0 1574.7399 Q6NUN2;A3F769;A3F768;O15226;A2I829;A2I831 Q6NUN2 246 259 NKRF;NRF NF-kappa-B-repressing factor yes no 2 0.017013 88.338 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1336 541 1375 5042 7645 7645 1 CQSFNQLVYHQNEIVQSLK LTEHFGKFYKEVIDKCQSFNQLVYHQNEIV NQLVYHQNEIVQSLKTHLQVKNSFAYQPLL K C Q L K T 0 0 2 0 1 4 1 0 1 1 2 1 0 1 0 2 0 0 1 2 0 0 19 0 2334.1427 O75691 O75691 75 93 UTP20 Small subunit processome component 20 homolog yes yes 3 0.0012332 31.138 2 1.0212 1.329 3.8083 2 Median 1.0212 1.329 3.8083 2 0 Median NaN NaN NaN 0 0 Median 9782200 4473100 5309100 9782200 4473100 5309100 0 0 0 1337 1207 1376 5043;5044 7646;7647 7647 2 CQSLTEDLEFRK QLADETLLKVDLENRCQSLTEDLEFRKSMY ENRCQSLTEDLEFRKSMYEEEINETRRKHE R C Q R K S 0 1 0 1 1 1 2 0 0 0 2 1 0 1 0 1 1 0 0 0 0 0 12 1 1524.7242 P20700;E9PBF6;A0A0D9SFE5;Q6DC98 P20700 198 209 LMNB1 Lamin-B1 yes no 3 0.0025485 84.605 2 1.4064 1.8991 5.8983 2 Median 1.4064 1.8991 5.8983 2 0 Median NaN NaN NaN 0 0 Median 10004000 3867500 6136800 10004000 3867500 6136800 0 0 0 1338 1285 1377 5045;5046 7648;7649 7649 2 CRPDQLTGLSLLPLSEK PSTGEPATYGELQQRCRPDQLTGLSLLPLS PDQLTGLSLLPLSEKAARARQEELYSELQA R C R E K A 0 1 0 1 1 1 1 1 0 0 5 1 0 0 2 2 1 0 0 0 0 0 17 1 1926.0244 Q15149;D3DWL0 Q15149 3336 3352 PLEC;PLEC1 Plectin yes no 3 0.013131 36.637 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3861500 0 3861500 3861500 0 3861500 0 0 0 1339 1507 1378 5047 7650 7650 1 CSASPPLRR VFFSAQNAAKQPSDKCSASPPLRRQCIREN KQPSDKCSASPPLRRQCIRENGNVAKTPRN K C S R R Q 1 2 0 0 1 0 0 0 0 0 1 0 0 0 2 2 0 0 0 0 0 0 9 1 1042.5342 P46013;Q70L73 P46013 824 832 MKI67 Antigen KI-67 no no 3 0.018369 55.37 3 0.8013 1.0675 3.4059 2 Median 0.8013 1.0675 3.4059 2 0 Median NaN NaN NaN 0 0 Median 31199000 15324000 15875000 31199000 15324000 15875000 0 0 0 1340 1342;1604 1379 5048;5049;5050 7651;7652;7653 7652 3 CSEGSFLLTTFPR VEFSGKPAARKALDRCSEGSFLLTTFPRPV DRCSEGSFLLTTFPRPVTVEPMDQLDDEEG R C S P R P 0 1 0 0 1 0 1 1 0 0 2 0 0 2 1 2 2 0 0 0 0 0 13 0 1513.7235 A8K525;A0A0S2Z4Z9;Q15233;H7C367 A8K525 208 220 NONO Non-POU domain-containing octamer-binding protein yes no 2 0.0011574 91.936 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1238000 1238000 0 1238000 1238000 0 0 0 0 1341 473 1380 5051 7654 7654 1 CSEQPSISDIK NTSEKADGLSKDASRCSEQPSISDIKEKSK DASRCSEQPSISDIKEKSKFRMSELSSSRP R C S I K E 0 0 0 1 1 1 1 0 0 2 0 1 0 0 1 3 0 0 0 0 0 0 11 0 1262.5813 Q59GQ7;A0A0C4DGA6;Q14527;A8K5B6;Q05DF7;Q05DQ5;Q05BZ6 Q59GQ7 360 370 HLTF Helicase-like transcription factor yes no 2 0.0021449 78.816 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3660500 3660500 0 3660500 3660500 0 0 0 0 1342 425 1381 5052;5053 7655;7656 7655 2 CSLPAEEDSVLEK TFMISPETVTGTGKKCSLPAEEDSVLEKLG KKCSLPAEEDSVLEKLGERKPCNSQPSELS K C S E K L 1 0 0 1 1 0 3 0 0 0 2 1 0 0 1 2 0 0 0 1 0 0 13 0 1475.6814 E7EVA0;P27816;A0A024R2V0;B4DM10 E7EVA0 652 664 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 0.031667 30.824 1 0.83358 1.0672 NaN 1 Median 0.83358 1.0672 NaN 1 0 Median NaN NaN NaN 0 0 Median 3795800 2751600 1044200 3795800 2751600 1044200 0 0 0 1343 1017 1382 5054 7657 7657 1 CSQDQGVLASELAQNK ESPRCQPKPSEEAPKCSQDQGVLASELAQN SQDQGVLASELAQNKEELTPGAPQHQLPPV K C S N K E 2 0 1 1 1 3 1 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 16 0 1746.8207 Q9H6F5 Q9H6F5 127 142 CCDC86 Coiled-coil domain-containing protein 86 yes yes 2 1.1117E-129 286.53 4 0.75542 0.9367 8.337 4 Median 0.75542 0.9367 8.337 4 0 Median NaN NaN NaN 0 0 Median 60337000 33514000 26823000 60337000 33514000 26823000 0 0 0 1344 1737 1383 5055;5056;5057;5058 7658;7659;7660;7661;7662;7663;7664;7665 7661 8 CSSVMLLGMMAR WERATEKVACCPLERCSSVMLLGMMARGKP LERCSSVMLLGMMARGKPEIVGSNLDTLVS R C S A R G 1 1 0 0 1 0 0 1 0 0 2 0 3 0 0 2 0 0 0 1 0 0 12 0 1354.623 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 772 783 NCAPD2 Condensin complex subunit 1 yes no 2 0.0038912 45.161 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1666200 1666200 0 0 0 0 1666200 1666200 0 1345 757 1384 5059 7666 7666 266;267;268 1 CSVCPDYDLCSVCEGK ICDGCNGPVVGTRYKCSVCPDYDLCSVCEG SVCPDYDLCSVCEGKGLHRGHTKLAFPSPF K C S G K G 0 0 0 2 4 0 1 1 0 0 1 1 0 0 1 2 0 0 1 2 0 0 16 0 1947.7471 Q13501;E7EMC7;E3WH17;E9PFW8;E3W990;B4DE82;C9JRJ8 Q13501 142 157 SQSTM1;SQSTM1-ALK Sequestosome-1;Tyrosine-protein kinase receptor yes no 2 0.00012399 92.781 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2752000 2752000 0 2752000 2752000 0 0 0 0 1346 1471 1385 5060;5061 7667;7668 7668 2 CTGGEVGATSALAPK PPKFDPNEIKVVYLRCTGGEVGATSALAPK CTGGEVGATSALAPKIGPLGLSPKKVGDDI R C T P K I 3 0 0 0 1 0 1 3 0 0 1 1 0 0 1 1 2 0 0 1 0 0 15 0 1417.6871 P30050;Q59FI9;D3DS95 P30050 17 31 RPL12;hCG_21173 60S ribosomal protein L12 yes no 2 9.0345E-41 206.1 4 1 0.78401 0.99261 4.5643 4 Median 0.78401 0.99261 4.5643 4 0 Median NaN NaN NaN 0 0 Median 223100000 132390000 90702000 208890000 118190000 90702000 14204000 14204000 0 1347 1307 1386 5062;5063;5064;5065;5066 7669;7670;7671;7672;7673;7674;7675;7676;7677 7672 9 CTLCSQPGATIGCEIK IKTVLQEIKRGKRMKCTLCSQPGATIGCEI TLCSQPGATIGCEIKACVKTYHYHCGVQDK K C T I K A 1 0 0 0 3 1 1 2 0 2 1 1 0 0 1 1 2 0 0 0 0 0 16 0 1793.811 Q8IWS0;A0A0D9SGE8;Q5JRC6;B4E138 Q8IWS0 280 295 PHF6 PHD finger protein 6 yes no 2 2.6923E-10 135.02 4 1.03 1.306 13.048 3 Median 1.03 1.306 13.048 3 0 Median NaN NaN NaN 0 0 Median 21167000 10855000 10312000 21167000 10855000 10312000 0 0 0 1348 1625 1387 5067;5068;5069;5070 7678;7679;7680;7681;7682;7683;7684 7678 7 CTTDENKVPYFNAPVYLENK LGEFLHPCEDDIVCKCTTDENKVPYFNAPV NKVPYFNAPVYLENKEQIGKVDEIFGQLRD K C T N K E 1 0 3 1 1 0 2 0 0 0 1 2 0 1 2 0 2 0 2 2 0 0 20 1 2401.126 A0A024RDJ3;Q9NY12 A0A024RDJ3 88 107 NOLA1;GAR1 H/ACA ribonucleoprotein complex subunit 1 yes no 3 0.014462 65.47 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1002500 1002500 0 1002500 1002500 0 0 0 0 1349 317 1388 5071 7685 7685 1 CTVDVPEDLREACANENAHK PVNQNKTVKKNTFFKCTVDVPEDLREACAN PEDLREACANENAHKDFKKAVGACRIFYHP K C T H K D 3 1 2 2 2 0 3 0 1 0 1 1 0 0 1 0 1 0 0 2 0 0 20 1 2327.027 A0A0F7KYT8;A0A0F7L0Q8;B4DXZ6;A0A0F7L1S3;P51114;E7EU85;B4DGH9;E9PFF5;B4DM21;C9J5B4;C9IZ22;C9JZE0;C9JY20 A0A0F7KYT8 129 148 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 4 0.012344 22.902 1 0.70629 0.93121 NaN 1 Median 0.70629 0.93121 NaN 1 0 Median NaN NaN NaN 0 0 Median 17211000 9110100 8101400 17211000 9110100 8101400 0 0 0 1350 438 1389 5072 7686;7687 7686 2 CVACECDLGGSSSGAEVR IIESLGLCYHLHCFKCVACECDLGGSSSGA CECDLGGSSSGAEVRIRNHQLYCNDCYLRF K C V V R I 2 1 0 1 3 0 2 3 0 0 1 0 0 0 0 3 0 0 0 2 0 0 18 0 1912.7713 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;E9PMT2 A0A1P7ZIM8 1257 1274 LMO7 LIM domain only protein 7 yes no 2 3.1293E-23 141.46 4 0.52112 0.72963 6.6279 2 Median 0.52112 0.72963 6.6279 2 0 Median NaN NaN NaN 0 0 Median 8879000 6774200 2104800 8879000 6774200 2104800 0 0 0 1351 525 1390 5073;5074;5075;5076 7688;7689;7690;7691;7692;7693 7692 6 CVANNQVETLEK GIRARSARLQWFCDRCVANNQVETLEKLVE CDRCVANNQVETLEKLVELTQKLFECDRDQ R C V E K L 1 0 2 0 1 1 2 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 12 0 1403.6715 E5KNY5;P42704 E5KNY5 930 941 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.00022322 131.09 5 0.34222 0.4282 22.2 3 Median 0.34222 0.4282 22.2 3 0 Median NaN NaN NaN 0 0 Median 17847000 14094000 3753300 17847000 14094000 3753300 0 0 0 1352 1001 1391 5077;5078;5079;5080;5081 7694;7695;7696;7697;7698;7699;7700 7697 7 CVEDPETGLCLLPLTDK PNTHENLTYLQLLERCVEDPETGLCLLPLT EDPETGLCLLPLTDKAAKGGELVYTDSEAR R C V D K A 0 0 0 2 2 0 2 1 0 0 4 1 0 0 2 0 2 0 0 1 0 0 17 0 1958.9329 Q15149;D3DWL0 Q15149 3008 3024 PLEC;PLEC1 Plectin yes no 2 2.3164E-18 153.39 3 0.54525 0.69265 8.0294 3 Median 0.54525 0.69265 8.0294 3 0 Median NaN NaN NaN 0 0 Median 14968000 9205400 5762900 14968000 9205400 5762900 0 0 0 1353 1507 1392 5082;5083;5084 7701;7702;7703;7704 7702 3 CVEDPETGLR PNTHENLTYRQLLERCVEDPETGLRLLPLK QLLERCVEDPETGLRLLPLKGAEKAEVVET R C V L R L 0 1 0 1 1 0 2 1 0 0 1 0 0 0 1 0 1 0 0 1 0 0 10 0 1174.5288 Q15149;D3DWL0;Q96IE3 Q15149 3667 3676 PLEC;PLEC1 Plectin yes no 2 5.5024E-05 112.84 4 0.72454 0.96848 12.899 4 Median 0.72454 0.96848 12.899 4 0 Median NaN NaN NaN 0 0 Median 41480000 24076000 17404000 41480000 24076000 17404000 0 0 0 1354 1507 1393 5085;5086;5087;5088 7705;7706;7707;7708;7709;7710 7708 6 CVEVETDVVSNTSGSAR QEDLRVDGRGREDYRCVEVETDVVSNTSGS EVETDVVSNTSGSARVKLGHTDILVGVKAE R C V A R V 1 1 1 1 1 0 2 1 0 0 0 0 0 0 0 3 2 0 0 4 0 0 17 0 1808.8211 B2RDZ9;A0A024R2P7;Q15024;B4DIU0 B2RDZ9 34 50 EXOSC7 Exosome complex component RRP42 yes no 2 7.5377E-05 77.305 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1075400 1075400 0 1075400 1075400 0 0 0 0 1355 91 1394 5089 7711 7711 1 CVLPEEDSGELAK RLWQTVVGKTYGLWKCVLPEEDSGELAKPK WKCVLPEEDSGELAKPKIGFPETTEEELEE K C V A K P 1 0 0 1 1 0 3 1 0 0 2 1 0 0 1 1 0 0 0 1 0 0 13 0 1445.6708 Q9Y3F4;B0AZV0 Q9Y3F4 305 317 STRAP Serine-threonine kinase receptor-associated protein yes no 2 0.011088 90.149 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1200200 1200200 0 1200200 1200200 0 0 0 0 1356 1818 1395 5090 7712 7712 1 CVVSSLGITDR LLHLPELFSPGMLVRCVVSSLGITDRGKKS MLVRCVVSSLGITDRGKKSVKLSLNPKNVN R C V D R G 0 1 0 1 1 0 0 1 0 1 1 0 0 0 0 2 1 0 0 2 0 0 11 0 1205.6074 Q14690;B4DH82;B4DES7 Q14690 151 161 PDCD11 Protein RRP5 homolog yes no 2 0.010673 56.563 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15925000 10809000 5115800 15925000 10809000 5115800 0 0 0 1357 1494 1396 5091;5092;5093 7713;7714;7715 7713 3 CYDTYQLSLK GQYILATGTYKPRVRCYDTYQLSLKFERCL KPRVRCYDTYQLSLKFERCLDSEVVTFEIL R C Y L K F 0 0 0 1 1 1 0 0 0 0 2 1 0 0 0 1 1 0 2 0 0 0 10 0 1289.5962 Q9BSC4;B4DS83 Q9BSC4 79 88 NOL10 Nucleolar protein 10 yes no 2 0.03233 47.603 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2672400 0 2672400 2672400 0 2672400 0 0 0 1358 1710 1397 5094;5095 7716;7717 7717 2 CYIVATVDR TYADDCLVQRVTQHKCYIVATVDRDLKRRI RVTQHKCYIVATVDRDLKRRIRKIPGVPIM K C Y D R D 1 1 0 1 1 0 0 0 0 1 0 0 0 0 0 0 1 0 1 2 0 0 9 0 1095.5383 Q66K47;G3V5S9;G3V1S4;Q4FZ45;Q9Y324 Q66K47 65 73 FCF1;DKFZp686O2396 rRNA-processing protein FCF1 homolog yes no 2 0.011716 81.548 2 1.1536 1.5059 NaN 1 Median 1.1536 1.5059 NaN 1 0 Median NaN NaN NaN 0 0 Median 7622600 3429800 4192800 7622600 3429800 4192800 0 0 0 1359 1078 1398 5096;5097 7718;7719;7720 7719 3 DAAFQNVLTHVCLD QQDLHRAIEKMKKSKDAAFQNVLTHVCLD_ KDAAFQNVLTHVCLD_______________ K D A L D - 2 0 1 2 1 1 0 0 1 0 2 0 0 1 0 0 1 0 0 2 0 0 14 0 1601.7508 Q8NBU5;B4E2J1 Q8NBU5 348 361 ATAD1 ATPase family AAA domain-containing protein 1 yes no 2 0.017699 43.512 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12745000 0 0 12745000 0 0 0 0 0 1360 1649 1399 5098;5099 7721;7722 7721 2 DAAGIAMEAIAFAR GGRTMVQLFEKGYGKDAAGIAMEAIAFARN KDAAGIAMEAIAFARNQGFDVVLVDTAGRM K D A A R N 6 1 0 1 0 0 1 1 0 2 0 0 1 1 0 0 0 0 0 0 0 0 14 0 1405.7024 A0A024R3M0;P08240;Q6IAX9 A0A024R3M0 273 286 SRPR Signal recognition particle receptor subunit alpha yes no 2 0.021347 62.338 1 0.45503 0.59065 NaN 1 Median 0.45503 0.59065 NaN 1 0 Median NaN NaN NaN 0 0 Median 651250 384600 266650 651250 384600 266650 0 0 0 1361 102 1400 5100 7723 7723 1 DAALATALGDKK AQIKLREYEAALNSKDAALATALGDKKSLE NSKDAALATALGDKKSLEGDLEDLKDQIAQ K D A K K S 4 0 0 2 0 0 0 1 0 0 2 2 0 0 0 0 1 0 0 0 0 0 12 1 1172.6401 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;A0A0D9SFY5 P20700 146 157 LMNB1 Lamin-B1 yes no 2 4.9068E-16 143.96 4 2 1.6001 2.0642 14.603 6 Median 1.6244 1.9902 6.8714 4 0 Median 1.6001 2.5551 0.44296 2 0 Median 138120000 54126000 83996000 102770000 41300000 61467000 35355000 12826000 22529000 1362 1285 1401 5101;5102;5103;5104;5105;5106 7724;7725;7726;7727;7728;7729;7730;7731;7732;7733;7734;7735 7729 12 DAANFEQFLQER ______________________________ ______________________________ M D A E R I 2 1 1 1 0 2 2 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 12 0 1466.679 K7ERI7;K7EJT5;K7EP65;K7EKS7;K7ELC4;K7EMH1 K7ERI7 2 13 RPL22 yes no 2 8.1934E-07 128.81 2 0.89773 1.2639 NaN 1 Median 0.89773 1.2639 NaN 1 0 Median NaN NaN NaN 0 0 Median 5378800 2408400 2970300 5378800 2408400 2970300 0 0 0 1363 1153 1402 5107;5108 7736;7737 7736 2 DAAPLPRPGAVLK SSPMEAELVRRILSRDAAPLPRPGAVLKDF SRDAAPLPRPGAVLKDFTVSGNLLFIRLTA R D A L K D 3 1 0 1 0 0 0 1 0 0 2 1 0 0 3 0 0 0 0 1 0 0 13 1 1303.7612 A4FUI5;O75638 A4FUI5 54 66 CTAG2 Cancer/testis antigen 2 yes no 2 0.0099264 77.192 2 0.46735 0.62126 17.452 2 Median 0.46735 0.62126 17.452 2 0 Median NaN NaN NaN 0 0 Median 6158400 3793300 2365100 6158400 3793300 2365100 0 0 0 1364 554 1403 5109;5110 7738;7739 7739 2 DAASAGLGSIGVK AVLIREGVSSTTPAKDAASAGLGSIGVKFS AKDAASAGLGSIGVKFSRDRESRSPFLKPD K D A V K F 3 0 0 1 0 0 0 3 0 1 1 1 0 0 0 2 0 0 0 1 0 0 13 0 1144.6088 A0A024QZH6;Q9H7N4 A0A024QZH6 853 865 SR-A1;SCAF1 Splicing factor, arginine/serine-rich 19 yes no 2 0.0011886 61.344 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6473900 6473900 0 6473900 6473900 0 0 0 0 1365 14 1404 5111;5112 7740;7741 7740 2 DADPHFHHFLLSQTEK MAAFKWQPTASEPVKDADPHFHHFLLSQTE ADPHFHHFLLSQTEKETGSTSIQAADSTAV K D A E K E 1 0 0 2 0 1 1 0 3 0 2 1 0 2 1 1 1 0 0 0 0 0 16 0 1920.9119 K7EMM8;D3DUE6;K7EQB2;Q49A26;D3DUE7;K7EPU6 Q49A26 200 215 GLYR1;N-PAC Putative oxidoreductase GLYR1 no no 3 2.8855E-19 163.62 2 0.87448 1.0911 9.3258 2 Median 0.87448 1.0911 9.3258 2 0 Median NaN NaN NaN 0 0 Median 41970000 21596000 20374000 41970000 21596000 20374000 0 0 0 1366 982;1533;1151 1405 5113;5114 7742;7743;7744;7745 7743 4 DADPILISLR GPEAALEAEEWVSGRDADPILISLREAYVP WVSGRDADPILISLREAYVPSKQRDLKISR R D A L R E 1 1 0 2 0 0 0 0 0 2 2 0 0 0 1 1 0 0 0 0 0 0 10 0 1111.6237 A0A024R5K1;Q9BR76;Q9NSK3 A0A024R5K1 384 393 CORO1B;DKFZp762I166 Coronin;Coronin-1B yes no 2 0.00051281 111.06 4 0.8346 1.1158 10.537 4 Median 0.8346 1.1158 10.537 4 0 Median NaN NaN NaN 0 0 Median 40721000 22157000 18564000 40721000 22157000 18564000 0 0 0 1367 145 1406 5115;5116;5117;5118 7746;7747;7748;7749;7750;7751;7752;7753;7754;7755 7752 10 DADSITLFDVQQK CDEIFYAGTGNLLLRDADSITLFDVQQKRT LRDADSITLFDVQQKRTLASVKISKVKYVI R D A Q K R 1 0 0 3 0 2 0 0 0 1 1 1 0 1 0 1 1 0 0 1 0 0 13 0 1478.7253 P53621 P53621 468 480 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 2.0084E-20 188.99 2 1.0445 1.3331 108.15 2 Median 1.0445 1.3331 108.15 2 0 Median NaN NaN NaN 0 0 Median 18637000 8066200 10571000 18637000 8066200 10571000 0 0 0 1368 1371 1407 5119;5120 7756;7757;7758 7756 3 DADSSISVLEIHSQK MKTGELEKETAPLRKDADSSISVLEIHSQK DADSSISVLEIHSQKAQIEEPDPPEMETSL K D A Q K A 1 0 0 2 0 1 1 0 1 2 1 1 0 0 0 4 0 0 0 1 0 0 15 0 1627.8053 Q96T23;H0YER1;H0YCN2 Q96T23 512 526 RSF1 Remodeling and spacing factor 1 yes no 2 9.3699E-24 150.51 2 2 0.91699 1.395 30.41 3 Plateau 0.64303 0.81393 NaN 1 0 Median 0.90866 1.3777 1.7688 2 0 Median 50587000 26672000 23915000 16633000 7994200 8638800 33954000 18678000 15276000 1369 1702 1408 5121;5122;5123;5124 7759;7760;7761;7762;7763;7764;7765;7766 7760 8 DAEAWFNEK NMRSQYEQLAEQNRKDAEAWFNEKSKELTT AEQNRKDAEAWFNEKSKELTTEIDNNIEQI K D A E K S 2 0 1 1 0 0 2 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 9 0 1108.4825 CON__P13645;P13645;CON__Q148H6;CON__Q7Z3Y7;Q7Z3Y7;CON__Q7Z3Z0;CON__Q7Z3Y8;Q7Z3Z0;Q7Z3Y8 CON__P13645 335 343 KRT10;KRT28;KRT25;KRT27 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 27 yes no 2 0.017455 57.708 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42522000 42522000 0 0 0 0 42522000 42522000 0 + 1370 960 1409 5125;5126 7767;7768 7767 2 DAEDALHNLDRK RRPRGFAYVQFEDVRDAEDALHNLDRKWIC DVRDAEDALHNLDRKWICGRQIEIQFAQGD R D A R K W 2 1 1 3 0 0 1 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1395.6743 Q5JRI1;Q53GD7;A0A0S2Z504;O75494 Q5JRI1 63 74 SRSF10 Serine/arginine-rich splicing factor 10 yes no 3 0.00060881 81.92 2 0.37482 0.49305 9.0615 2 Median 0.37482 0.49305 9.0615 2 0 Median NaN NaN NaN 0 0 Median 12038000 7016300 5021600 12038000 7016300 5021600 0 0 0 1371 474 1410 5127;5128 7769;7770 7770 2 DAEEDDDTGGINLHK ELVQQWPQMQKSAIKDAEEDDDTGGINLHK DAEEDDDTGGINLHKAKERLQEEDKFDKEE K D A H K A 1 0 1 4 0 0 2 2 1 1 1 1 0 0 0 0 1 0 0 0 0 0 15 0 1627.6962 Q13206;Q86VR6;E9PIF2;Q59EC7;B4DKX3 Q13206 710 724 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 2 0.00016825 100.55 2 2 0.81618 1.1391 2.1103 2 Median NaN NaN NaN 0 0 Median 0.81618 1.1391 2.1103 2 0 Median 10982000 4480700 6501800 2685700 0 2685700 8296700 4480700 3816100 1372 1466 1411 5129;5130;5131;5132 7771;7772;7773;7774;7775 7772 5 DAEEWFFTK EMRDQYEKMAEKNRKDAEEWFFTKTEELNR AEKNRKDAEEWFFTKTEELNREVATNSELV K D A T K T 1 0 0 1 0 0 2 0 0 0 0 1 0 2 0 0 1 1 0 0 0 0 9 0 1171.5186 CON__P02533;P02533;A0A024R1X6 CON__P02533 301 309 KRT14 Keratin, type I cytoskeletal 14 no no 2 0.0094026 66.621 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11905000 11905000 0 0 0 0 11905000 11905000 0 + 1373 949 1412 5133;5134 7776;7777 7777 2 DAEGSTCLHLAAK AVKYLIKAGALVDPKDAEGSTCLHLAAKKG PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ K D A A K K 3 0 0 1 1 0 1 1 1 0 2 1 0 0 0 1 1 0 0 0 0 0 13 0 1371.6453 A0A1B0GV09;Q9H9B1;A0A1B0GU48 A0A1B0GV09 805 817 EHMT1 Histone-lysine N-methyltransferase EHMT1 no no 2 7.1792E-11 151.22 5 0.71195 0.87248 5.3327 2 Median 0.71195 0.87248 5.3327 2 0 Median NaN NaN NaN 0 0 Median 8811400 5659800 3151500 8811400 5659800 3151500 0 0 0 1374 518 1413 5135;5136;5137;5138;5139 7778;7779;7780;7781;7782;7783 7780 6 DAEQEGEGGGIITR EDTEKPSVNERPSEKDAEQEGEGGGIITRQ KDAEQEGEGGGIITRQTLKNMLDKEVKELR K D A T R Q 1 1 0 1 0 1 3 4 0 2 0 0 0 0 0 0 1 0 0 0 0 0 14 0 1430.6638 A0A1B0GUH9;A0A1P0AZG4;A0PJI9 A0A1B0GUH9 868 881 C10orf12 yes no 2 2.0906E-22 145.91 3 0.84906 1.1372 32.942 2 Median 0.84906 1.1372 32.942 2 0 Median NaN NaN NaN 0 0 Median 16710000 7356400 9354000 16710000 7356400 9354000 0 0 0 1375 517 1414 5140;5141;5142 7784;7785;7786;7787 7785 4 DAFLGSFLYEYSR FAEDKDVCKNYQEAKDAFLGSFLYEYSRRH AKDAFLGSFLYEYSRRHPEYAVSVLLRLAK K D A S R R 1 1 0 1 0 0 1 1 0 0 2 0 0 2 0 2 0 0 2 0 0 0 13 0 1566.7355 CON__P02769 CON__P02769 347 359 yes yes 2 0.00043594 112.94 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14830000 14830000 0 14830000 14830000 0 0 0 0 + 1376 952 1415 5143;5144;5145 7788;7789;7790 7790 3 DAFPVAGQK TVKALKEKIESEKGKDAFPVAGQKLIYAGK ESEKGKDAFPVAGQKLIYAGKILNDDTALK K D A Q K L 2 0 0 1 0 1 0 1 0 0 0 1 0 1 1 0 0 0 0 1 0 0 9 0 931.47633 P54727;Q53F10;B7Z4W4;B4DEA3;B7ZA74;Q5W0S5;Q5W0S4;K7ENJ0;K7ELW1;A8K1J3;A0A024R7G8;P54725 P54727 37 45 RAD23B;RAD23A UV excision repair protein RAD23 homolog B;UV excision repair protein RAD23 homolog A yes no 2 0.014051 57.281 1 1 0.64486 0.89591 10.581 2 Median 0.65458 0.83133 NaN 1 0 Median 0.63528 0.96552 NaN 1 0 Median 24469000 14569000 9900300 12031000 7288100 4742600 12438000 7280400 5157700 1377 1374 1416 5146;5147 7791;7792 7791 2 DAGEGGLSLAIEGPSK HGVVNKPATFTVNTKDAGEGGLSLAIEGPS AGEGGLSLAIEGPSKAEISCTDNQDGTCSV K D A S K A 2 0 0 1 0 0 2 4 0 1 2 1 0 0 1 2 0 0 0 0 0 0 16 0 1499.7468 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4DTD5 P21333 1892 1907 FLNA;FLJ00119 Filamin-A yes no 2 1.5385E-24 157.5 5 1.0038 1.2803 8.3199 3 Median 1.0038 1.2803 8.3199 3 0 Median NaN NaN NaN 0 0 Median 72196000 24961000 47235000 72196000 24961000 47235000 0 0 0 1378 1287 1417 5148;5149;5150;5151;5152 7793;7794;7795;7796;7797;7798;7799 7798 7 DAGEGLLAVQITDPEGKPK GVPASLPVEFTIDAKDAGEGLLAVQITDPE GLLAVQITDPEGKPKKTHIQDNHDGTYTVA K D A P K K 2 0 0 2 0 1 2 3 0 1 2 2 0 0 2 0 1 0 0 1 0 0 19 1 1937.0106 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1574 1592 FLNA;FLJ00119 Filamin-A yes no 2;3 2.42E-23 156.2 6 0.85472 1.0513 20.807 5 Median 0.85472 1.0513 20.807 5 0 Median NaN NaN NaN 0 0 Median 34831000 18765000 16065000 34831000 18765000 16065000 0 0 0 1379 1287 1418 5153;5154;5155;5156;5157;5158 7800;7801;7802;7803;7804;7805;7806;7807;7808 7800 9 DAGEGLLAVQITDQEGKPK GVPASLPVDFAIDARDAGEGLLAVQITDQE GLLAVQITDQEGKPKRAIVHDNKDGTYAVT R D A P K R 2 0 0 2 0 2 2 3 0 1 2 2 0 0 1 0 1 0 0 1 0 0 19 1 1968.0164 O75369;A0A024R321;Q68CT4;E7EN95 O75369 1546 1564 FLNB;DKFZp686A1668 Filamin-B yes no 2 4.9597E-83 234.9 6 0.81177 0.99016 15.038 2 Median 0.81177 0.99016 15.038 2 0 Median NaN NaN NaN 0 0 Median 13266000 6550500 6715100 13266000 6550500 6715100 0 0 0 1380 1199 1419 5159;5160;5161;5162;5163;5164 7809;7810;7811;7812;7813;7814;7815;7816 7810 8 DAGQISGLNVLR TVPAYFNDSQRQATKDAGQISGLNVLRVIN ATKDAGQISGLNVLRVINEPTAAALAYGLD K D A L R V 1 1 1 1 0 1 0 2 0 1 2 0 0 0 0 1 0 0 0 1 0 0 12 0 1241.6728 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;B7Z4T3 B7Z4V2 193 204 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 0.045658 73.841 1 1 4.7396 7.3228 NaN 1 Median NaN NaN NaN 0 0 Median 4.7396 7.3228 NaN 1 0 Median 22507000 3734100 18773000 2680200 0 2680200 19827000 3734100 16093000 1381 910 1420 5165;5166 7817;7818 7817 2 DAGTIAGLNVLR TVPAYFNDSQRQATKDAGTIAGLNVLRIIN ATKDAGTIAGLNVLRIINEPTAAAIAYGLD K D A L R I 2 1 1 1 0 0 0 2 0 1 2 0 0 0 0 0 1 0 0 1 0 0 12 0 1198.667 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;Q53HF2;E9PN89;B4E1Q1;B4DTX2;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PI65;A4D111 V9HW22 160 171 HEL-S-72p;HSPA8;LOC401308 Heat shock cognate 71 kDa protein yes no 2 4.812E-30 174.41 1 2 0.9035 1.2567 NaN 1 Median 0.9035 1.2567 NaN 1 0 Median NaN NaN NaN 0 0 Median 198520000 141020000 57497000 117540000 60043000 57497000 80977000 80977000 0 1382 1253 1421 5167;5168;5169 7819;7820;7821 7819 3 DAGVIAGLNVLR TVPAYFNDSQRQATKDAGVIAGLNVLRIIN ATKDAGVIAGLNVLRIINEPTAAAIAYGLD K D A L R I 2 1 1 1 0 0 0 2 0 1 2 0 0 0 0 0 0 0 0 2 0 0 12 0 1196.6877 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DI39;B4DWK5;B4DNT8;B4DVU9;B4E1S9;Q9UQC1;B4DXY3;Q53FA3;B4DI54;P34931;B2RCQ9 A8K5I0 160 171 HEL-S-103;HSPA1B;HSPA1A;HSP70-1;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like no no 2 1.1204E-09 143.04 4 2 0.7572 1.0323 48.048 5 Median 0.72959 0.99703 3.1647 3 0 Median 1.4639 2.3935 7.468 2 0 Median 411150000 186340000 224810000 212390000 108850000 103540000 198760000 77494000 121270000 1383 439;810 1422 5170;5171;5172;5173;5174;5175 7822;7823;7824;7825;7826;7827;7828;7829;7830 7830 9 DAHALIYK DEWMPTKENLRSFTKDAHALIYKDLPFETL NLRSFTKDAHALIYKDLPFETLEVEAKVAL K D A Y K D 2 0 0 1 0 0 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 8 0 929.49707 C9JG87;Q9NYK5 C9JG87 195 202 MRPL39 39S ribosomal protein L39, mitochondrial yes no 2 0.024188 88.029 1 0.50718 0.643 NaN 1 Median 0.50718 0.643 NaN 1 0 Median NaN NaN NaN 0 0 Median 3820400 2604500 1215900 3820400 2604500 1215900 0 0 0 1384 937 1423 5176 7831 7831 1 DAHLLVESK IRNLLESYHVPELIKDAHLLVESKNLDFQK VPELIKDAHLLVESKNLDFQKTVQLTSSEL K D A S K N 1 0 0 1 0 0 1 0 1 0 2 1 0 0 0 1 0 0 0 1 0 0 9 0 1010.5397 E5KNY5;P42704;B4DSR0 E5KNY5 641 649 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 5.2067E-05 151.44 2 1 0.4024 0.50976 NaN 1 Median 0.4024 0.50976 NaN 1 0 Median NaN NaN NaN 0 0 Median 16541000 5810600 10731000 14295000 5810600 8484000 2246700 0 2246700 1385 1001 1424 5177;5178;5179 7832;7833;7834;7835 7832 4 DAHSIHGTNPQYLVEK ______________________________ AHSIHGTNPQYLVEKIIRTRIYESKYWKEE K D A E K I 1 0 1 1 0 1 1 1 2 1 1 1 0 0 1 1 1 0 1 1 0 0 16 0 1807.8853 Q8NAV1;B2RDP2 Q8NAV1 8 23 PRPF38A Pre-mRNA-splicing factor 38A yes no 3 0.00012312 51.888 3 0.58848 0.76344 18.664 3 Median 0.58848 0.76344 18.664 3 0 Median NaN NaN NaN 0 0 Median 53647000 36139000 17507000 53647000 36139000 17507000 0 0 0 1386 1647 1425 5180;5181;5182 7836;7837;7838;7839;7840 7838 5 DAIGISLLK YVSGDQKEIISYDVKDAIGISLLKKSGIEV ISYDVKDAIGISLLKKSGIEVRLISERACS K D A L K K 1 0 0 1 0 0 0 1 0 2 2 1 0 0 0 1 0 0 0 0 0 0 9 0 928.55933 Q53GF0;Q8NFW8 Q53GF0 307 315 CMAS N-acylneuraminate cytidylyltransferase yes no 2 0.025866 48.283 1 1.4283 1.799 NaN 1 Median 1.4283 1.799 NaN 1 0 Median NaN NaN NaN 0 0 Median 2518000 970160 1547800 2518000 970160 1547800 0 0 0 1387 1542 1426 5183 7841 7841 1 DAIPENLPPLTADFAEDK KPLLEKSHCIAEVEKDAIPENLPPLTADFA PENLPPLTADFAEDKDVCKNYQEAKDAFLG K D A D K D 3 0 1 3 0 0 2 0 0 1 2 1 0 1 3 0 1 0 0 0 0 0 18 0 1954.9524 CON__P02769 CON__P02769 319 336 yes yes 2 0.0030206 87.863 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4296400 4296400 0 4296400 4296400 0 0 0 0 + 1388 952 1427 5184 7842 7842 1 DAITQALFLR DVINESGLYRLKGHKDAITQALFLREKNLL LKGHKDAITQALFLREKNLLVTSGKDTMVK K D A L R E 2 1 0 1 0 1 0 0 0 1 2 0 0 1 0 0 1 0 0 0 0 0 10 0 1146.6397 Q5TDG3;Q9UNX4 Q5TDG3 150 159 WDR3 WD repeat-containing protein 3 yes no 2 2.2952E-16 149.65 4 2 0.76803 1.076 5.1043 6 Median 0.79523 1.079 5.3137 4 0 Median 0.70313 1.042 5.8455 2 0 Median 116570000 65230000 51339000 75793000 41773000 34020000 40776000 23457000 17319000 1389 1576 1428 5185;5186;5187;5188;5189;5190 7843;7844;7845;7846;7847;7848;7849;7850;7851;7852;7853;7854 7850 12 DALDGPAAEAEPEHSFDGLRR TASQVAATKTLPNGRDALDGPAAEAEPEHS AAEAEPEHSFDGLRRKVSAQRLQEAGILSA R D A R R K 4 2 0 3 0 0 3 2 1 0 2 0 0 1 2 1 0 0 0 0 0 0 21 1 2252.0458 Q15149;D3DWL0 Q15149 2768 2788 PLEC;PLEC1 Plectin yes no 3 5.0664E-12 74.953 2 1.0465 1.3958 12.906 2 Median 1.0465 1.3958 12.906 2 0 Median NaN NaN NaN 0 0 Median 33351000 17039000 16312000 33351000 17039000 16312000 0 0 0 1390 1507 1429 5191;5192 7855;7856;7857;7858 7857 4 DALLSALSIQNYHLECNETK NTRWSQFRELVDRKKDALLSALSIQNYHLE ALSIQNYHLECNETKSWIREKTKVIESTQD K D A T K S 2 0 2 1 1 1 2 0 1 1 4 1 0 0 0 2 1 0 1 0 0 0 20 0 2318.1213 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0 B2ZZ89 949 968 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 3.5044E-35 196.8 6 0.83437 1.0708 15.616 4 Median 0.83437 1.0708 15.616 4 0 Median NaN NaN NaN 0 0 Median 71776000 33955000 37821000 71776000 33955000 37821000 0 0 0 1391 346 1430 5193;5194;5195;5196;5197;5198 7859;7860;7861;7862;7863;7864;7865;7866;7867;7868;7869 7865 11 DALNQATSQVESK NTQLARLQQENSILRDALNQATSQVESKQN LRDALNQATSQVESKQNAELAKLRQELSKV R D A S K Q 2 0 1 1 0 2 1 0 0 0 1 1 0 0 0 2 1 0 0 1 0 0 13 0 1389.6736 A0A0A0MRV0;A7BI36;Q9P2E9;F8W7S5;A1A5C4;A0A087WVV2;A1A5C5 A0A0A0MRV0 807 819 RRBP1 Ribosome-binding protein 1 yes no 2 0.00048371 92.112 1 2 1.2396 1.7574 NaN 1 Median NaN NaN NaN 0 0 Median 1.2396 1.7574 NaN 1 0 Median 9356600 1927100 7429400 1659000 0 1659000 7697500 1927100 5770400 1392 390 1431 5199;5200;5201 7870;7871;7872 7871 3 DALQGFK AFVEFENDGQAGAARDALQGFKITPSHAMK DGQAGAARDALQGFKITPSHAMKITYAKK_ R D A F K I 1 0 0 1 0 1 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 7 0 777.4021 B5BTZ8;P08579;B4DDC7;M0R268;B2R802;P09012 B5BTZ8 205 211 SNRPB2;SNRPA U2 small nuclear ribonucleoprotein B;U1 small nuclear ribonucleoprotein A yes no 2 0.019142 69.432 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4800100 4800100 0 3764000 3764000 0 1036100 1036100 0 1393 890 1432 5202;5203 7873;7874 7873 2 DALSDLALHFLNK KTGCNVLLIQKSILRDALSDLALHFLNKMK LRDALSDLALHFLNKMKIMVIKDIEREDIE R D A N K M 2 0 1 2 0 0 0 0 1 0 4 1 0 1 0 1 0 0 0 0 0 0 13 0 1455.7722 B7Z9L0;B7Z2Z8;A8K3C3;P50991;B7Z2F4 B7Z9L0 251 263 CCT4 T-complex protein 1 subunit delta yes no 2;3 2.1512E-09 152.54 6 0.24921 0.31036 14.27 3 Median 0.24921 0.31036 14.27 3 0 Median NaN NaN NaN 0 0 Median 51300000 42422000 8878400 51300000 42422000 8878400 0 0 0 1394 593 1433 5204;5205;5206;5207;5208;5209 7875;7876;7877;7878;7879;7880;7881;7882 7878 8 DALTLSLSEQVAAALK PGAPPTAAAGSMMKKDALTLSLSEQVAAAL ALTLSLSEQVAAALKPAAAPPPTPLRADGA K D A L K P 4 0 0 1 0 1 1 0 0 0 4 1 0 0 0 2 1 0 0 1 0 0 16 0 1628.8985 P17535 P17535 48 63 JUND Transcription factor jun-D yes yes 2 0.047289 40.516 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1395 1276 1434 5210 7883 7883 1 DANSSFFDNSSSPHLLDQLK QEVTPSRSTLQIGKRDANSSFFDNSSSPHL FFDNSSSPHLLDQLKAQNQELRNKINELEL R D A L K A 1 0 2 3 0 1 0 0 1 0 3 1 0 2 1 5 0 0 0 0 0 0 20 0 2221.0287 P49454 P49454 265 284 CENPF Centromere protein F yes yes 3 4.0458E-05 85.61 4 1.0291 1.305 17.436 4 Median 1.0291 1.305 17.436 4 0 Median NaN NaN NaN 0 0 Median 23955000 12440000 11514000 23955000 12440000 11514000 0 0 0 1396 1351 1435 5211;5212;5213;5214 7884;7885;7886;7887 7885 4 DAPAESVAYHAQNNPPVPPKPQPK SHTNIHLLVTTYNLRDAPAESVAYHAQNNP HAQNNPPVPPKPQPKVQEKADIPVKSSPQA R D A P K V 4 0 2 1 0 2 1 0 1 0 0 2 0 0 7 1 0 0 1 2 0 0 24 1 2551.2819 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 573 596 ADNP Activity-dependent neuroprotector homeobox protein yes no 3 9.5092E-07 78.674 6 2 0.82163 1.0264 26.421 6 Median 0.77806 0.9731 10.136 4 0 Median 0.98317 1.5517 2.6979 2 0 Median 52709000 27272000 25436000 32520000 16741000 15780000 20189000 10532000 9656800 1397 729 1436 5215;5216;5217;5218;5219;5220;5221;5222 7888;7889;7890;7891;7892;7893;7894;7895;7896;7897 7890 9 DAPPLLPSDTGQGYR GMHREVYALLYSDKKDAPPLLPSDTGQGYR DAPPLLPSDTGQGYRTVKAKLGSKKVRPWK K D A Y R T 1 1 0 2 0 1 0 2 0 0 2 0 0 0 3 1 1 0 1 0 0 0 15 0 1585.7736 B4DQG8;Q9NPF5;Q5TG40;Q5TG38;Q5TG37;B4DTH3;B4DEF2;B4DTU6 B4DQG8 67 81 DMAP1 DNA methyltransferase 1-associated protein 1 yes no 2 0.0024256 42.556 1 2 0.5988 0.92321 4.9639 3 Plateau 0.68156 0.92321 NaN 1 0 Median 0.58914 0.85187 2.483 2 0 Median 21827000 12195000 9632000 8487000 4528500 3958500 13340000 7666900 5673500 1398 850 1437 5223;5224;5225 7898;7899;7900;7901 7901 4 DAPQDFHPDR NSEDIRLSPFMADIRDAPQDFHPDRVKARG MADIRDAPQDFHPDRVKARGPGLEKTGVAV R D A D R V 1 1 0 3 0 1 0 0 1 0 0 0 0 1 2 0 0 0 0 0 0 0 10 0 1196.521 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 665 674 FLNA Filamin-A yes no 2;3 0.00088706 93.598 7 2 0.81374 1.0841 45.111 9 Median 0.79643 1.0781 7.8924 7 0 Median 2.1756 2.9 5.108 2 0 Median 132490000 67288000 65200000 122190000 63887000 58304000 10298000 3400900 6896700 1399 1287 1438 5226;5227;5228;5229;5230;5231;5232;5233;5234 7902;7903;7904;7905;7906;7907;7908;7909;7910;7911;7912;7913 7905 12 DAPSLEEVEGHVADGSATEMGTTK AVHADVYRVLGGLGKDAPSLEEVEGHVADG GHVADGSATEMGTTKKAVKPKKKHLHRTIE K D A T K K 3 0 0 2 0 0 4 3 1 0 1 1 1 0 1 2 3 0 0 2 0 0 24 0 2430.0857 Q15003;B4DRG7;E9PHA2;A8K4T8;C9J470 Q15003 186 209 NCAPH Condensin complex subunit 2 yes no 3 5.2892E-06 50.873 7 1 0.70527 0.90287 15.411 6 Median 0.77224 0.99696 14.198 5 0 Median 0.51474 0.7609 NaN 1 0 Median 35361000 20514000 14847000 29292000 16887000 12405000 6068500 3626500 2442000 1400 1500 1439;1440 5235;5236;5237;5238;5239;5240;5241;5242 7914;7915;7916;7917;7918;7919;7920;7921;7922;7923 7923 680 10 DAPVDHLGTEHCYDSSAPPK WQQQLVNIRAMRNKKDAPVDHLGTEHCYDS HLGTEHCYDSSAPPKVRRYQVLLSLMLSSQ K D A P K V 2 0 0 3 1 0 1 1 2 0 1 1 0 0 3 2 1 0 1 1 0 0 20 0 2194.9589 H3BRL9;E5KTI5;P78549;H3BPD5 H3BRL9 73 92 NTHL1 Endonuclease III-like protein 1 yes no 3 0.0099266 45.094 2 0.85483 1.1017 2.9711 2 Median 0.85483 1.1017 2.9711 2 0 Median NaN NaN NaN 0 0 Median 8590800 4905100 3685700 8590800 4905100 3685700 0 0 0 1401 1003 1441 5243;5244 7924;7925;7926;7927 7924 4 DAPVGEEEAPAK LKHGILTHLKVSFSRDAPVGEEEAPAKYVQ FSRDAPVGEEEAPAKYVQDNIQLHGQQVAR R D A A K Y 3 0 0 1 0 0 3 1 0 0 0 1 0 0 2 0 0 0 0 1 0 0 12 0 1211.567 Q9UBK8 Q9UBK8 639 650 MTRR Methionine synthase reductase yes yes 2 0.0084619 45.137 1 0.41366 0.52702 NaN 1 Median 0.41366 0.52702 NaN 1 0 Median NaN NaN NaN 0 0 Median 1257200 1002200 255010 1257200 1002200 255010 0 0 0 1402 1782 1442 5245 7928 7928 1 DAQDVQASQAEADQQQTR RIRSIEALLEAGQARDAQDVQASQAEADQQ DVQASQAEADQQQTRLKELESQVSGLEKEA R D A T R L 4 1 0 3 0 6 1 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 18 0 1987.8831 A0A0A0MRV0;A7BI36;Q9P2E9;F8W7S5;A1A5C4;A0A087WVV2;A1A5C5 A0A0A0MRV0 971 988 RRBP1 Ribosome-binding protein 1 yes no 2 1.1208E-96 249.58 4 2 1.2393 1.6445 24.09 6 Median 1.2498 1.7037 29.732 4 0 Median 1.2393 1.612 2.6312 2 0 Median 17550000 7573400 9976400 8547600 3778000 4769600 9002200 3795400 5206800 1403 390 1443 5246;5247;5248;5249;5250;5251 7929;7930;7931;7932;7933;7934;7935;7936;7937;7938;7939;7940;7941 7933 13 DAQEFAADVR DLSTVKRKMENRDYRDAQEFAADVRLMFSN NRDYRDAQEFAADVRLMFSNCYKYNPPDHD R D A V R L 3 1 0 2 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 10 0 1120.5149 A0A024RCR5;A0A0G2JK44;P25440;H0Y6K2;A0A140T9E9;X5CF57;A0A140T9V2;U3KQA6;A0A0G2JHL0;A0A140T9F7 A0A024RCR5 410 419 BRD2 Bromodomain-containing protein 2 yes no 2 0.0058223 72.643 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2647000 2647000 0 0 0 0 2647000 2647000 0 1404 300 1444 5252 7942 7942 1 DAQPSFSAEDIAK FRTVLIACNVKQMSKDAQPSFSAEDIAKIK SKDAQPSFSAEDIAKIKKFSKTRSKDIFDQ K D A A K I 3 0 0 2 0 1 1 0 0 1 0 1 0 1 1 2 0 0 0 0 0 0 13 0 1377.6412 Q8NHX6;Q53HJ4;B2R7C5;A0A0S2Z4T1;A0A0S2Z492;P25205;B4DUQ9;J3KQ69;B4DS46 Q8NHX6 271 283 HCC5;MCM3 DNA helicase;DNA replication licensing factor MCM3 yes no 2 0.01846 67.879 1 0.41255 0.53483 NaN 1 Median 0.41255 0.53483 NaN 1 0 Median NaN NaN NaN 0 0 Median 5018600 3062400 1956200 5018600 3062400 1956200 0 0 0 1405 463 1445 5253 7943 7943 1 DAQQDLNLDIEK TERTPKHDVHQICDKDAQQDLNLDIEKITE CDKDAQQDLNLDIEKITETGAVKPTGECSG K D A E K I 1 0 1 3 0 2 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 12 0 1400.6783 P49454 P49454 1793 1804 CENPF Centromere protein F yes yes 2 2.4731E-05 90.685 4 0.78683 0.98501 20.686 3 Median 0.78683 0.98501 20.686 3 0 Median NaN NaN NaN 0 0 Median 17835000 8320000 9514600 17835000 8320000 9514600 0 0 0 1406 1351 1446 5254;5255;5256;5257 7944;7945;7946;7947;7948 7947 5 DASDDLDDLNFFNQK EDKDLEADEEDTRKKDASDDLDDLNFFNQK DASDDLDDLNFFNQKKKKKKTKKIFDIDEA K D A Q K K 1 0 2 5 0 1 0 0 0 0 2 1 0 2 0 1 0 0 0 0 0 0 15 0 1755.7588 Q6IBR8;B5BU01;P20042;Q3B7I9 Q6IBR8 65 79 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes no 2 0.00014446 63.408 2 0.67661 0.87471 23.298 2 Median 0.67661 0.87471 23.298 2 0 Median NaN NaN NaN 0 0 Median 11093000 6223400 4869800 11093000 6223400 4869800 0 0 0 1407 891 1447 5258;5259 7949;7950;7951 7950 3 DASGQPIFNASAK PPALKQPEDLVVLGKDASGQPIFNASAKHW GKDASGQPIFNASAKHWTNFVITENANDAI K D A A K H 3 0 1 1 0 1 0 1 0 1 0 1 0 1 1 2 0 0 0 0 0 0 13 0 1304.6361 Q6NUN2;A3F769;A3F768;O15226;A2I829;A2I832 Q6NUN2 323 335 NKRF;NRF NF-kappa-B-repressing factor yes no 2 3.7154E-06 92.866 1 0.40891 0.51989 NaN 1 Median 0.40891 0.51989 NaN 1 0 Median NaN NaN NaN 0 0 Median 12894000 9585200 3308900 12894000 9585200 3308900 0 0 0 1408 541 1448 5260 7952;7953 7953 2 DASLVTNEDHQR LHAEYESLRDLLKSKDASLVTNEDHQRSLL KSKDASLVTNEDHQRSLLAFDQQPAMHHSF K D A Q R S 1 1 1 2 0 1 1 0 1 0 1 0 0 0 0 1 1 0 0 1 0 0 12 0 1383.6379 P49454 P49454 771 782 CENPF Centromere protein F yes yes 2 1.5588E-44 205.18 4 2 1.0077 1.3737 12.899 4 Median 0.91089 1.2444 11.532 2 0 Median 1.0329 1.48 8.1036 2 0 Median 37861000 22701000 15160000 21522000 14264000 7257900 16339000 8436300 7902200 1409 1351 1449 5261;5262;5263;5264;5265;5266 7954;7955;7956;7957;7958;7959;7960;7961;7962;7963 7954 10 DASLVVTTSGDHK YRGHTAEILDFALSKDASLVVTTSGDHKAK SKDASLVVTTSGDHKAKVFCVQRPDR____ K D A H K A 1 0 0 2 0 0 0 1 1 0 1 1 0 0 0 2 2 0 0 2 0 0 13 0 1328.6572 H7C0R2;C9JG97;A0A024R410;C9JEH3;Q13685 H7C0R2 166 178 AAMP Angio-associated migratory cell protein yes no 2 0.0014937 74.841 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1410 113 1450 5267 7964 7964 1 DASSTYSQVENLNR KVSFLLPTLRKVNGKDASSTYSQVENLNRE KDASSTYSQVENLNRELTSRVTAHWEKFMA K D A N R E 1 1 2 1 0 1 1 0 0 0 1 0 0 0 0 3 1 0 1 1 0 0 14 0 1582.7223 A0A140VJD0;Q9UFC0;H7C5S6;Q59FT0 A0A140VJD0 126 139 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes no 2 3.5514E-05 111.5 4 2 0.51215 0.71875 6.0907 2 Median 0.51215 0.71875 6.0907 2 0 Median NaN NaN NaN 0 0 Median 16483000 13777000 2705600 7058200 4352500 2705600 9425000 9425000 0 1411 493 1451 5268;5269;5270;5271;5272;5273 7965;7966;7967;7968;7969;7970 7965 6 DATNVAAAFEEAVR CRDNGDYPYFETSAKDATNVAAAFEEAVRR KDATNVAAAFEEAVRRVLATEDRSDHLIQT K D A V R R 5 1 1 1 0 0 2 0 0 0 0 0 0 1 0 0 1 0 0 2 0 0 14 0 1462.7052 A0A024RBV5;P51151 A0A024RBV5 157 170 RAB9A Ras-related protein Rab-9A yes no 2 4.2392E-05 110.64 2 0.42088 0.59407 36.011 2 Median 0.42088 0.59407 36.011 2 0 Median NaN NaN NaN 0 0 Median 6141800 3328000 2813800 6141800 3328000 2813800 0 0 0 1412 283 1452 5274;5275 7971;7972 7972 2 DAVEDLESVGK DGAKKAVGGLGKLGKDAVEDLESVGKGAVH KLGKDAVEDLESVGKGAVHDVKDVLDSVL_ K D A G K G 1 0 0 2 0 0 2 1 0 0 1 1 0 0 0 1 0 0 0 2 0 0 11 0 1160.5561 P81605 P81605 86 96 DCD Dermcidin;Survival-promoting peptide;DCD-1 yes yes 2 0.0038491 70.1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8507800 8507800 0 0 0 0 8507800 8507800 0 1413 1428 1453 5276;5277 7973;7974 7973 2 DAVLLLFANK VADELQKMLLVDELRDAVLLLFANKQDLPN VDELRDAVLLLFANKQDLPNAMAISEMTDK R D A N K Q 2 0 1 1 0 0 0 0 0 0 3 1 0 1 0 0 0 0 0 1 0 0 10 0 1102.6386 P18085;C9JPM4;C9JAK5;U3KQF2 P18085 118 127 ARF4 ADP-ribosylation factor 4 yes no 2 1.6157E-05 119.27 4 0.40982 0.52464 17.094 3 Median 0.40982 0.52464 17.094 3 0 Median NaN NaN NaN 0 0 Median 10089000 7392000 2697100 10089000 7392000 2697100 0 0 0 1414 1281 1454 5278;5279;5280;5281 7975;7976;7977;7978;7979;7980;7981 7979 7 DAVLYFSESLVPTAR GVCIGLSEIMKSTSRDAVLYFSESLVPTAR DAVLYFSESLVPTARKALCDPLEEVREAAA R D A A R K 2 1 0 1 0 0 1 0 0 0 2 0 0 1 1 2 1 0 1 2 0 0 15 0 1666.8566 E1NZA1;Q92616;A0A024RBS1 E1NZA1 1997 2011 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 8.7545E-11 134.75 4 0.49182 1.226 35.716 3 Plateau 0.49182 1.226 35.716 3 0 Plateau NaN NaN NaN 0 0 Median 25863000 15755000 10108000 25863000 15755000 10108000 0 0 0 1415 1000 1455 5282;5283;5284;5285 7982;7983;7984;7985;7986;7987;7988;7989 7986 8 DAVSGLAFR EAQSCQHLYTFTGHRDAVSGLAFRRGTHQL TFTGHRDAVSGLAFRRGTHQLYSTSHDRSV R D A F R R 2 1 0 1 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 1 0 0 9 0 934.48723 O43818 O43818 242 250 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 4.047E-05 148.04 3 2 0.83691 1.1467 52.887 5 Median 0.87008 1.1841 57.962 3 0 Median 0.55343 0.88447 0.29843 2 0 Median 167620000 92589000 75034000 85950000 41403000 44546000 81674000 51186000 30487000 1416 1188 1456 5286;5287;5288;5289;5290 7990;7991;7992;7993;7994;7995 7990 6 DAVSNTTNQLESK EAEIAHLKQENGILRDAVSNTTNQLESKQS LRDAVSNTTNQLESKQSAELNKLRQDYARL R D A S K Q 1 0 2 1 0 1 1 0 0 0 1 1 0 0 0 2 2 0 0 1 0 0 13 0 1405.6685 A0A024R663;Q86UP2 A0A024R663 431 443 KTN1 Kinectin yes no 2 1.372E-05 100.82 1 2 0.37368 0.55749 4.937 2 Median NaN NaN NaN 0 0 Median 0.37368 0.55749 4.937 2 0 Median 17903000 13017000 4886600 781550 781550 0 17122000 12235000 4886600 1417 155 1457 5291;5292;5293 7996;7997;7998;7999;8000 8000 5 DAVTYTEHAK ETRGVLKVFLENVIRDAVTYTEHAKRKTVT ENVIRDAVTYTEHAKRKTVTAMDVVYALKR R D A A K R 2 0 0 1 0 0 1 0 1 0 0 1 0 0 0 0 2 0 1 1 0 0 10 0 1133.5353 B2R4R0;P62805;Q0VAS5 B2R4R0 69 78 HIST1H4H;HIST1H4A Histone H4 yes no 2;3 1.0795E-35 176.44 14 9 0.62582 0.92343 10.114 10 Median 0.81708 1.0238 8.0207 4 0 Median 0.58837 0.88861 8.1811 6 0 Median 4439900000 4020700000 419120000 3438400000 3138700000 299640000 1001500000 881990000 119480000 1418 686 1458 5294;5295;5296;5297;5298;5299;5300;5301;5302;5303;5304;5305;5306;5307;5308;5309;5310;5311;5312;5313;5314;5315;5316 8001;8002;8003;8004;8005;8006;8007;8008;8009;8010;8011;8012;8013;8014;8015;8016;8017;8018;8019;8020;8021;8022;8023;8024;8025;8026;8027;8028;8029;8030;8031;8032;8033;8034;8035;8036;8037;8038;8039;8040;8041 8014 41 DAVTYTEHAKR ETRGVLKVFLENVIRDAVTYTEHAKRKTVT NVIRDAVTYTEHAKRKTVTAMDVVYALKRQ R D A K R K 2 1 0 1 0 0 1 0 1 0 0 1 0 0 0 0 2 0 1 1 0 0 11 1 1289.6364 B2R4R0;P62805 B2R4R0 69 79 HIST1H4H;HIST1H4A Histone H4 yes no 2;3 2.6799E-28 190.96 8 3 0.73473 0.97931 11.934 10 Median 0.76427 1.0246 7.1455 8 0 Median 0.53424 0.81875 9.8154 2 0 Median 594030000 321080000 272960000 567900000 305690000 262210000 26132000 15389000 10743000 1419 686 1459 5317;5318;5319;5320;5321;5322;5323;5324;5325;5326;5327 8042;8043;8044;8045;8046;8047;8048;8049;8050;8051;8052;8053;8054;8055;8056;8057;8058 8052 17 DAYELEVLLR DGGGEATGSPLAQGKDAYELEVLLRVKESE LAQGKDAYELEVLLRVKESEIQYLKQEISS K D A L R V 1 1 0 1 0 0 2 0 0 0 3 0 0 0 0 0 0 0 1 1 0 0 10 0 1219.6449 B9EGI2;U6FSN9;Q6WCQ1;J3KSW8;H0Y2S9;H0Y7E2;Q9Y6X7;Q5ZEZ6;Q96EE5;J3QRL2 B9EGI2 897 906 MPRIP;Mprip-Ntrk1 fusion gene;KIAA0864;M-RIP Tyrosine-protein kinase receptor;Myosin phosphatase Rho-interacting protein yes no 2 0.018182 93.598 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1420 928 1460 5328 8059 8059 1 DCDLQEDACYNCGR PDICYRCGESGHLAKDCDLQEDACYNCGRG KDCDLQEDACYNCGRGGHIAKDCKEPKRER K D C G R G 1 1 1 3 3 1 1 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 14 0 1774.6345 A0A0S2Z4Q3;A0A0S2Z4K2;P62633 A0A0S2Z4Q3 59 72 CNBP Cellular nucleic acid-binding protein yes no 2 0.00033344 87.298 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1708500 1708500 0 1708500 1708500 0 0 0 0 1421 466 1461 5329 8060 8060 1 DCEECIQLEPTFIK AACYTKLLEFQLALKDCEECIQLEPTFIKG KDCEECIQLEPTFIKGYTRKAAALEAMKDY K D C I K G 0 0 0 1 2 1 3 0 0 2 1 1 0 1 1 0 1 0 0 0 0 0 14 0 1780.8012 V9HW72;A8K690;P31948;H0YGI8 V9HW72 416 429 HEL-S-94n;STIP1 Stress-induced-phosphoprotein 1 yes no 2 0.0088388 94.538 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1467900 1467900 0 1467900 1467900 0 0 0 0 1422 622 1462 5330 8061 8061 1 DCFGCLR EWLKDTCGANAKQSRDCFGCLREWCDAFL_ GANAKQSRDCFGCLREWCDAFL________ R D C L R E 0 1 0 1 2 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 926.37386 A0A024R5H0;O75531;B2R4V4 A0A024R5H0 76 82 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 2 0.012604 101.33 3 0.93999 1.2912 3.8522 3 Median 0.93999 1.2912 3.8522 3 0 Median NaN NaN NaN 0 0 Median 2600700000 1351300000 1249400000 2600700000 1351300000 1249400000 0 0 0 1423 143 1463 5331;5332;5333 8062;8063;8064;8065;8066 8064 5 DCHCLGDVLIENTK EGKLQCNRLMPNSQKDCHCLGDVLIENTKE KDCHCLGDVLIENTKESKSQSEDLGRKPME K D C T K E 0 0 1 2 2 0 1 1 1 1 2 1 0 0 0 0 1 0 0 1 0 0 14 0 1672.7549 E9PEI0;Q69YH5;A8K8Z0;B3KRS8 E9PEI0 774 787 CDCA2 Cell division cycle-associated protein 2 yes no 3 0.0049909 23.831 1 0.87086 1.1049 NaN 1 Median 0.87086 1.1049 NaN 1 0 Median NaN NaN NaN 0 0 Median 6687000 3671000 3016000 6687000 3671000 3016000 0 0 0 1424 1023 1464 5334 8067 8067 1 DCLSIPYR RHNLEIIKTLVECWKDCLSIPYRLIFEKFS TLVECWKDCLSIPYRLIFEKFSGKDPNSKD K D C Y R L 0 1 0 1 1 0 0 0 0 1 1 0 0 0 1 1 0 0 1 0 0 0 8 0 1022.4855 P78527 P78527 2247 2254 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.011139 71.296 2 0.41732 0.55618 20.832 2 Median 0.41732 0.55618 20.832 2 0 Median NaN NaN NaN 0 0 Median 16957000 10563000 6393300 16957000 10563000 6393300 0 0 0 1425 1427 1465 5335;5336 8068;8069;8070 8069 3 DCQLLEHK QLKLYCETCDKLTCRDCQLLEHKEHRYQFI CDKLTCRDCQLLEHKEHRYQFIEEAFQNQK R D C H K E 0 0 0 1 1 1 1 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 8 0 1041.4913 A0A024R784;O15164;B4DYZ9;Q6ZSA6;H0Y612;A0A024R0F6;Q9UPN9 A0A024R784 245 252 TRIM24;TRIM33 Transcription intermediary factor 1-alpha;E3 ubiquitin-protein ligase TRIM33 no no 2 0.00030596 98.458 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1426 171;34 1466 5337 8071 8071 1 DCTSALALVPFSIK AACHLKDGNCRDCIKDCTSALALVPFSIKP KDCTSALALVPFSIKPLLRRASAYEALEKY K D C I K P 2 0 0 1 1 0 0 0 0 1 2 1 0 1 1 2 1 0 0 1 0 0 14 0 1520.7909 Q15785;B4DXU3;Q6ZPD0 Q15785 73 86 TOMM34 Mitochondrial import receptor subunit TOM34 yes no 2 0.0090157 91.123 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1119600 1119600 0 1119600 1119600 0 0 0 0 1427 1516 1467 5338 8072 8072 1 DCVAVAGPLGVTHFLILSK LTASRLQVRKKNSLKDCVAVAGPLGVTHFL VAGPLGVTHFLILSKTETNVYFKLMRLPGG K D C S K T 2 0 0 1 1 0 0 2 1 1 3 1 0 1 1 1 1 0 0 3 0 0 19 0 1996.0816 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;C9J3W3;C9JHF7 A0A0A6YYI3 72 90 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2;3 1.4385E-50 201.72 8 0.77081 0.96736 6.2827 8 Median 0.77081 0.96736 6.2827 8 0 Median NaN NaN NaN 0 0 Median 265900000 147970000 117930000 265900000 147970000 117930000 0 0 0 1428 408 1468 5339;5340;5341;5342;5343;5344;5345;5346 8073;8074;8075;8076;8077;8078;8079;8080;8081;8082;8083;8084;8085;8086;8087 8078 14 DDAEVERLTCEEEEEK PRLMEEDELPSWIIKDDAEVERLTCEEEEE DAEVERLTCEEEEEKMFGRGSRHRKEVDYS K D D E K M 1 1 0 2 1 0 7 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 16 1 1979.8266 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;B4E0F1;B4DSI8;B3KNW7;A0A0U1RRG6;P51531;A0A0U1RQZ9;F6VDE0;B4DK35 A7E2E1 1350 1365 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 6.4536E-06 115.34 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1429 403;1362 1469 5347 8088 8088 1 DDAQSVETLGK QKNTSNKNKLEDELKDDAQSVETLGKPKAK DELKDDAQSVETLGKPKAKRIRTSKTKQAS K D D G K P 1 0 0 2 0 1 1 1 0 0 1 1 0 0 0 1 1 0 0 1 0 0 11 0 1161.5513 Q8WYP5;B3KRD0 Q8WYP5 2177 2187 AHCTF1 Protein ELYS yes no 2 0.00083425 85.29 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18693000 18693000 0 0 0 0 18693000 18693000 0 1430 1670 1470 5348;5349;5350 8089;8090;8091 8090 3 DDAQSVETLGKPK QKNTSNKNKLEDELKDDAQSVETLGKPKAK LKDDAQSVETLGKPKAKRIRTSKTKQASKN K D D P K A 1 0 0 2 0 1 1 1 0 0 1 2 0 0 1 1 1 0 0 1 0 0 13 1 1386.6991 Q8WYP5;B3KRD0 Q8WYP5 2177 2189 AHCTF1 Protein ELYS yes no 2 1.0347E-21 194.48 4 2 0.73016 1.0212 15.496 6 Median 0.84308 1.0383 19.711 4 0 Median 0.61516 0.98831 5.0055 2 0 Median 132830000 76939000 55892000 67383000 36682000 30702000 65448000 40257000 25191000 1431 1670 1471 5351;5352;5353;5354;5355;5356 8092;8093;8094;8095;8096;8097;8098;8099;8100;8101;8102;8103;8104 8100 13 DDDIAALVVDNGSGMCK ______________________________ DIAALVVDNGSGMCKAGFAGDDAPRAVFPS M D D C K A 2 0 1 4 1 0 0 2 0 1 1 1 1 0 0 1 0 0 0 2 0 0 17 0 1778.7815 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;B4DW52;G5E9R0;E7EVS6;C9JZR7;C9JTX5 Q53GK6 2 18 PS1TP5BP1;ACTB Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed yes no 2 6.2319E-61 229.56 8 2 0.8363 1.0297 61.779 10 Median 0.79164 0.99524 13.175 8 0 Median 2.8657 4.3908 3.0807 2 0 Median 196630000 87834000 108790000 148980000 76975000 72000000 47652000 10858000 36793000 1432 1388 1472;1473 5357;5358;5359;5360;5361;5362;5363;5364;5365;5366 8105;8106;8107;8108;8109;8110;8111;8112;8113;8114;8115;8116;8117;8118;8119 8114 603 15 DDEENYLDLFSHK LTAEIEKIQKGDSKKDDEENYLDLFSHKNM KKDDEENYLDLFSHKNMKLKERVLIPVKQY K D D H K N 0 0 1 3 0 0 2 0 1 0 2 1 0 1 0 1 0 0 1 0 0 0 13 0 1623.7053 B4DDX2;B2R7B5;Q07666;B4E043 B4DDX2 120 132 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 2 0.022658 65.234 1 0.72442 0.89367 NaN 1 Median 0.72442 0.89367 NaN 1 0 Median NaN NaN NaN 0 0 Median 1334000 737140 596820 1334000 737140 596820 0 0 0 1433 704 1474 5367 8120 8120 1 DDEVQVVR ELRQKYNVRSMPIRKDDEVQVVRGHYKGQQ RSMPIRKDDEVQVVRGHYKGQQIGKVVQVY K D D V R G 0 1 0 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 8 0 958.47197 Q9UNX3;E5RIT6;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;Q6IBH6;P61254;J3KTJ8;A0A024RBF6 Q9UNX3 52 59 RPL26L1;RPL26;hCG_26523 60S ribosomal protein L26-like 1;60S ribosomal protein L26 no no 1;2 1.641E-07 154.09 5 2 0.78114 1.0703 30.321 7 Median 0.80678 1.0985 8.9981 5 0 Median 0.38607 0.62198 1.9263 2 0 Median 673780000 389960000 283820000 572810000 316880000 255930000 100970000 73079000 27890000 1434 1797;1142 1475 5368;5369;5370;5371;5372;5373;5374 8121;8122;8123;8124;8125;8126;8127;8128;8129;8130;8131;8132;8133;8134 8127 14 DDFAYCLNCFCDLYAK TACRKQLSGQRFTARDDFAYCLNCFCDLYA DFAYCLNCFCDLYAKKCAGCTNPISGLGGT R D D A K K 2 0 1 3 3 0 0 0 0 0 2 1 0 2 0 0 0 0 2 0 0 0 16 0 2073.8271 I0CE67;Q6I9R8;Q2XQU9;J3KNW4;A0A0A0MSG2;Q14192;Q2TSB7;Q53T40 I0CE67 194 209 FHL2;AAG11 Four and a half LIM domains protein 2 yes no 2 0.0094574 83.314 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1065900 1065900 0 1065900 1065900 0 0 0 0 1435 396 1476 5375 8135 8135 1 DDGTGQLLLPLSDAR DERLSYTQLLRRCRRDDGTGQLLLPLSDAR DDGTGQLLLPLSDARKLTFRGLRKQITMEE R D D A R K 1 1 0 3 0 1 0 2 0 0 4 0 0 0 1 1 1 0 0 0 0 0 15 0 1569.7999 Q15149;D3DWL0;Q96IE3 Q15149 4004 4018 PLEC;PLEC1 Plectin yes no 2 0.0047471 96.334 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1436 1507 1477 5376 8136 8136 1 DDGVFVQEVTQNSPAAR NWQGSGSHGLTIAQRDDGVFVQEVTQNSPA GVFVQEVTQNSPAARTGVVKEGDQIVGATI R D D A R T 2 1 1 2 0 2 1 1 0 0 0 0 0 1 1 1 1 0 0 3 0 0 17 0 1831.8701 Q09666;B4DTV0;E9PQE3;E9PJZ0;E9PKR9;E9PJC6;E9PLK4;Q96EC4;Q9BVU3 Q09666 29 45 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 1.5003E-18 157.86 4 1 0.31841 0.43017 20.489 4 Median 0.31841 0.43017 20.489 4 0 Median NaN NaN NaN 0 0 Median 27022000 18124000 8897500 24719000 18124000 6595100 2302400 0 2302400 1437 1453 1478 5377;5378;5379;5380;5381 8137;8138;8139;8140;8141;8142;8143;8144;8145;8146 8137 10 DDGVSIPGEYTSFLAPISSSK ELSPECLDGAQHFLKDDGVSIPGEYTSFLA PGEYTSFLAPISSSKLYNEVRACREKDRDP K D D S K L 1 0 0 2 0 0 1 2 0 2 1 1 0 1 2 5 1 0 1 1 0 0 21 0 2169.0477 B4DV00;B2RDD7;O14744;H0YJD3 B4DV00 353 373 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 2 0.0079087 50.077 1 0.33909 0.44305 NaN 1 Median 0.33909 0.44305 NaN 1 0 Median NaN NaN NaN 0 0 Median 2066200 1501000 565280 2066200 1501000 565280 0 0 0 1438 734 1479 5382 8147 8147 1 DDIAQVDYVEPSQNTISLK LKPKSWVRLKRGIYKDDIAQVDYVEPSQNT QVDYVEPSQNTISLKMIPRIDYDRIKARMS K D D L K M 1 0 1 3 0 2 1 0 0 2 1 1 0 0 1 2 1 0 1 2 0 0 19 0 2134.043 B4DZJ7;O00267;B4E0Q4;B4DJK4 B4DZJ7 266 284 SUPT5H Transcription elongation factor SPT5 yes no 2 0.00018945 109.55 3 0.86811 1.1102 NaN 1 Median 0.86811 1.1102 NaN 1 0 Median NaN NaN NaN 0 0 Median 5348500 2686100 2662400 5348500 2686100 2662400 0 0 0 1439 879 1480 5383;5384;5385 8148;8149;8150;8151 8150 4 DDIIICEIGDVFK VVVQHVHFDGLGRTKDDIIICEIGDVFKAK TKDDIIICEIGDVFKAKNLIEVMRKSHEAR K D D F K A 0 0 0 3 1 0 1 1 0 4 0 1 0 1 0 0 0 0 0 1 0 0 13 0 1535.7541 Q9Y512 Q9Y512 60 72 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 2 0.00066079 69.721 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1580600 1372000 208570 1580600 1372000 208570 0 0 0 1440 1827 1481 5386;5387 8152;8153 8153 2 DDILINRPAK AYRTFIKGKNYMKQRDDILINRPAKKHLEL YMKQRDDILINRPAKKHLELYDRDLKHFRI R D D A K K 1 1 1 2 0 0 0 0 0 2 1 1 0 0 1 0 0 0 0 0 0 0 10 1 1153.6455 Q8TED0;H0Y8P4 Q8TED0 349 358 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 3.1113E-05 111.95 2 0.66541 1.0219 5.1421 2 Median NaN NaN NaN 0 0 Median 0.66541 1.0219 5.1421 2 0 Median 18489000 10760000 7729400 0 0 0 18489000 10760000 7729400 1441 1660 1482 5388;5389 8154;8155 8154 2 DDINLLPSK FHKRTPNRYHLRSKKDDINLLPSKSSVTKI HLRSKKDDINLLPSKSSVTKICRDPQTPVL K D D S K S 0 0 1 2 0 0 0 0 0 1 2 1 0 0 1 1 0 0 0 0 0 0 9 0 1013.5393 Q643R0;Q9ULW0;B3KM90 Q643R0 349 357 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 0.0054408 96.034 1 2 0.52657 0.78981 6.683 2 Median NaN NaN NaN 0 0 Median 0.52657 0.78981 6.683 2 0 Median 27004000 18415000 8589400 4659500 4659500 0 22345000 13755000 8589400 1442 1581 1483 5390;5391;5392 8156;8157;8158;8159 8157 4 DDLGNTLEK VEAIINPTNADIDLKDDLGNTLEKKGGKEF ADIDLKDDLGNTLEKKGGKEFVEAVLELRK K D D E K K 0 0 1 2 0 0 1 1 0 0 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1003.4822 O75367;Q59FH0 O75367 227 235 H2AFY Core histone macro-H2A.1 yes no 1;2 1.2775E-08 186.78 8 2 0.8188 1.0824 9.1043 9 Median 0.82018 1.0735 8.2775 7 0 Median 0.74879 1.181 1.7348 2 0 Median 994660000 559430000 435230000 489580000 269780000 219800000 505080000 289650000 215430000 1443 1198 1484 5393;5394;5395;5396;5397;5398;5399;5400;5401;5402 8160;8161;8162;8163;8164;8165;8166;8167;8168;8169;8170;8171;8172;8173;8174;8175;8176;8177;8178;8179;8180 8166 21 DDNMFQIGK TSRALSSSKQSSSSRDDNMFQIGKMRYVSV QSSSSRDDNMFQIGKMRYVSVRDFKGKVLI R D D G K M 0 0 1 2 0 1 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 0 9 0 1066.4753 Q6IBA2;Q59G24;P53999;B7Z1Z0;Q6E433 Q6IBA2 60 68 PC4;SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes no 2 0.0016537 80.438 3 0.52026 0.7908 4.3743 3 Median NaN NaN NaN 0 0 Median 0.52026 0.7908 4.3743 3 0 Median 39839000 26304000 13535000 0 0 0 39839000 26304000 13535000 1444 1372 1485 5403;5404;5405 8181;8182;8183;8184;8185 8183 595 5 DDNPGLRDFEASFIR TLSGRPVKIRKIRARDDNPGLRDFEASFIR DDNPGLRDFEASFIRLLDKITNGSRIEINQ R D D I R L 1 2 1 3 0 0 1 1 0 1 1 0 0 2 1 1 0 0 0 0 0 0 15 1 1750.8275 Q9Y2P8;Q5VYW8 Q9Y2P8 39 53 RCL1 RNA 3-terminal phosphate cyclase-like protein yes no 3 0.0037549 24.053 2 2 0.81295 1.0887 8.0909 4 Median 0.76418 1.0094 8.3839 2 0 Median 0.82822 1.1262 2.483 2 0 Median 34298000 17216000 17083000 21781000 10634000 11146000 12518000 6581300 5936300 1445 1806 1486 5406;5407;5408;5409 8186;8187;8188;8189 8188 4 DDPALATYYGSLFK FFKEFWEQKPLLIQRDDPALATYYGSLFKL RDDPALATYYGSLFKLTDLKSLCSRGMYYG R D D F K L 2 0 0 2 0 0 0 1 0 0 2 1 0 1 1 1 1 0 2 0 0 0 14 0 1559.7508 Q8IUF8;D6RCB6 Q8IUF8 69 82 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA yes no 2 0.00026967 92.247 3 1 0.659 0.83491 10.942 2 Median 0.659 0.83491 10.942 2 0 Median NaN NaN NaN 0 0 Median 12838000 10586000 2252000 9106500 6854500 2252000 3732000 3732000 0 1446 1623 1487 5410;5411;5412;5413 8190;8191;8192;8193 8191 4 DDPLTNLNTAFDVAEK HRHRPELIDYGKLRKDDPLTNLNTAFDVAE DPLTNLNTAFDVAEKYLDIPKMLDAEDIVG K D D E K Y 2 0 2 3 0 0 1 0 0 0 2 1 0 1 1 0 2 0 0 1 0 0 16 0 1761.8421 H9KV75;B7Z565;A0A024R694;P12814;Q86TX4;G3V2W4;B4DRP5;G3V2N5 H9KV75 134 149 ACTN1 Alpha-actinin-1 yes no 2 0.0028776 79.886 1 0.80394 1.0625 NaN 1 Median 0.80394 1.0625 NaN 1 0 Median NaN NaN NaN 0 0 Median 2299300 1401200 898070 2299300 1401200 898070 0 0 0 1447 157 1488 5414 8194 8194 1 DDPSKPVHLTAFLGYK KRSSRHRGKVKSFPKDDPSKPVHLTAFLGY DPSKPVHLTAFLGYKAGMTHIVREVDRPGS K D D Y K A 1 0 0 2 0 0 0 1 1 0 2 2 0 1 2 1 1 0 1 1 0 0 16 1 1786.9254 P39023;Q8TBW1;Q96QL0;B3KS36;H7C422;H7C3M2;B4DN06;F8WCR1 P39023 35 50 RPL3 60S ribosomal protein L3 yes no 2;3 2.7283E-25 128.74 9 2 0.73125 0.90562 9.9793 9 Median 0.74046 0.89688 7.882 7 0 Median 0.66187 1.0761 2.5897 2 0 Median 2287500000 1353900000 933680000 1819800000 1076000000 743780000 467720000 277820000 189900000 1448 1330 1489 5415;5416;5417;5418;5419;5420;5421;5422;5423;5424;5425 8195;8196;8197;8198;8199;8200;8201;8202;8203;8204;8205;8206;8207;8208;8209;8210;8211;8212;8213;8214;8215;8216;8217;8218;8219;8220;8221 8214 26 DDPVTNLNNAFEVAEK HRHRPELIEYDKLRKDDPVTNLNNAFEVAE DPVTNLNNAFEVAEKYLDIPKMLDAEDIVN K D D E K Y 2 0 3 2 0 0 2 0 0 0 1 1 0 1 1 0 1 0 0 2 0 0 16 0 1774.8374 A0A0S2Z3G9;O43707;B4E337;B4DSX0;K7EJH8 A0A0S2Z3G9 218 233 ACTN4 Alpha-actinin-4 yes no 2 9.8115E-13 137.81 4 0.84326 1.067 4.1396 4 Median 0.84326 1.067 4.1396 4 0 Median NaN NaN NaN 0 0 Median 40261000 21090000 19171000 40261000 21090000 19171000 0 0 0 1449 451 1490 5426;5427;5428;5429 8222;8223;8224;8225;8226;8227;8228 8228 7 DDSIEGIYDTLK TNRPQLSSCFLLSMKDDSIEGIYDTLKQCA SMKDDSIEGIYDTLKQCALISKSAGGIGVA K D D L K Q 0 0 0 3 0 0 1 1 0 2 1 1 0 0 0 1 1 0 1 0 0 0 12 0 1367.6456 B4E0I8;B4DNN4;P23921;B4DS95;Q53GZ5;E9PL69;B4DXB0;E9PP77;H0YCY7 B4E0I8 128 139 RRM1 Ribonucleoside-diphosphate reductase;Ribonucleoside-diphosphate reductase large subunit yes no 2 0.0093764 43.512 1 0.33453 0.42869 NaN 1 Median 0.33453 0.42869 NaN 1 0 Median NaN NaN NaN 0 0 Median 3233900 2450400 783460 3233900 2450400 783460 0 0 0 1450 839 1491 5430 8229 8229 1 DDTHYLLYIYDK WRIRPLPEEMLSYARDDTHYLLYIYDKMRL YARDDTHYLLYIYDKMRLEMWERGNGQPVQ R D D D K M 0 0 0 3 0 0 0 0 1 1 2 1 0 0 0 0 1 0 3 0 0 0 12 0 1557.7351 Q01780;B4DKG8;B4DFE4 Q01780 439 450 EXOSC10 Exosome component 10 yes no 2 0.0075653 46.73 2 0.41392 0.61505 6.1384 2 Median NaN NaN NaN 0 0 Median 0.41392 0.61505 6.1384 2 0 Median 15873000 10951000 4922400 0 0 0 15873000 10951000 4922400 1451 1433 1492 5431;5432 8230;8231;8232;8233 8230 4 DDVAPESGDTTVK KKRQQARKTASVLSKDDVAPESGDTTVKKP SKDDVAPESGDTTVKKPESKKEQTPEHGKK K D D V K K 1 0 0 3 0 0 1 1 0 0 0 1 0 0 1 1 2 0 0 2 0 0 13 0 1332.6045 O76021;Q32Q62;J3QSV6;A0PJ61 O76021 319 331 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 4.7516E-07 123.62 4 2 0.64454 0.84098 21.39 6 Median 0.65398 0.85412 2.966 4 0 Median 0.36213 0.57063 3.1071 2 0 Median 1024300000 707280000 316990000 430720000 263770000 166950000 593550000 443510000 150040000 1452 1210 1493 5433;5434;5435;5436;5437;5438 8234;8235;8236;8237;8238;8239;8240;8241;8242;8243;8244 8242 11 DDVAPESGDTTVKKPESK KKRQQARKTASVLSKDDVAPESGDTTVKKP APESGDTTVKKPESKKEQTPEHGKKKRGRG K D D S K K 1 0 0 3 0 0 2 1 0 0 0 3 0 0 2 2 2 0 0 2 0 0 18 2 1901.9218 O76021;Q32Q62;J3QSV6;A0PJ61 O76021 319 336 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 3 0.013476 53.255 1 0.36617 0.4106 NaN 1 Median 0.36617 0.4106 NaN 1 0 Median NaN NaN NaN 0 0 Median 1681700 1088400 593270 1681700 1088400 593270 0 0 0 1453 1210 1494 5439 8245 8245 1 DDVIQICGPADGIR LFTNFSGADLLKLTRDDVIQICGPADGIRL RDDVIQICGPADGIRLFNALKGRMVRPRLT R D D I R L 1 1 0 3 1 1 0 2 0 3 0 0 0 0 1 0 0 0 0 1 0 0 14 0 1527.7351 A0A024R120;Q12800;F8VWL0 A0A024R120 363 376 TFCP2 Alpha-globin transcription factor CP2 yes no 2 0.036541 44.188 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1454 48 1495 5440 8246 8246 1 DDVSISVEEGK GDPPLGALLAVEHVKDDVSISVEEGKENIL EHVKDDVSISVEEGKENILHVSENVIFTDV K D D G K E 0 0 0 2 0 0 2 1 0 1 0 1 0 0 0 2 0 0 0 2 0 0 11 0 1176.551 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5;V9GZ76 P07814 26 36 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.021621 48.785 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4059800 0 4059800 0 0 0 4059800 0 4059800 1455 1242 1496 5441 8247 8247 1 DEAEDYYDVITHPMDFQTVQNK VKYRFSWPFREPVTRDEAEDYYDVITHPMD DVITHPMDFQTVQNKCSCGSYRSVQEFLTD R D E N K C 1 0 1 4 0 2 2 0 1 1 0 1 1 1 1 0 2 0 2 2 0 0 22 0 2657.1592 Q9UIG0 Q9UIG0 1371 1392 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 0.005671 61.102 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1917500 0 1917500 1917500 0 1917500 0 0 0 1456 1786 1497 5442 8248 8248 1 DEATDGGGDNKEGEDSSVIHYDDK ELDDILKFGTEELFKDEATDGGGDNKEGED NKEGEDSSVIHYDDKAIERLLDRNQDETED K D E D K A 1 0 1 6 0 0 3 4 1 1 0 2 0 0 0 2 1 0 1 1 0 0 24 1 2552.0423 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 1203 1226 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 0.00028342 109.85 3 0.92089 1.1375 NaN 1 Median 0.92089 1.1375 NaN 1 0 Median NaN NaN NaN 0 0 Median 10995000 3805900 7189300 10995000 3805900 7189300 0 0 0 1457 428 1498 5443;5444;5445 8249;8250;8251 8250 3 DECNVVEVVAR HVLALTMLCLTEGAKDECNVVEVVARNHDH EGAKDECNVVEVVARNHDHQEIAVPVANLK K D E A R N 1 1 1 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 11 0 1288.6082 O75607 O75607 77 87 NPM3 Nucleoplasmin-3 yes yes 2 0.019746 51.276 2 0.67763 0.93311 NaN 1 Median 0.67763 0.93311 NaN 1 0 Median NaN NaN NaN 0 0 Median 10170000 6417200 3753000 10170000 6417200 3753000 0 0 0 1458 1205 1499 5446;5447 8252;8253 8252 2 DEDIPLFPVQTK EDVINFKKIYKTLKKDEDIPLFPVQTKYMD LKKDEDIPLFPVQTKYMDVVKERIRLARQI K D E T K Y 0 0 0 2 0 1 1 0 0 1 1 1 0 1 2 0 1 0 0 1 0 0 12 0 1400.7187 B4DKV2;G3V529;Q9GZR7;F5GYL3;B4E300;B4DM03;A0A087WXU8;Q7Z4X3;Q7Z4W0;B4DGI6 B4DKV2 616 627 DDX24 ATP-dependent RNA helicase DDX24 yes no 2 0.025556 80.706 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1581800 1581800 0 1581800 1581800 0 0 0 0 1459 822 1500 5448;5449 8254;8255 8254 2 DEDISLTLNMNEEEVEK QGQTRYHFLILLFSKDEDISLTLNMNEEEV DISLTLNMNEEEVEKRFEGRLTKNMSGSLY K D E E K R 0 0 2 2 0 0 5 0 0 1 2 1 1 0 0 1 1 0 0 1 0 0 17 0 2006.899 A0A024R4Z6;Q08945 A0A024R4Z6 280 296 SSRP1 FACT complex subunit SSRP1 yes no 2 4.7434E-06 117.7 1 1 0.71898 1.1304 NaN 1 Median NaN NaN NaN 0 0 Median 0.71898 1.1304 NaN 1 0 Median 27557000 15869000 11689000 0 0 0 27557000 15869000 11689000 1460 132 1501 5450;5451 8256;8257;8258;8259 8256 67 4 DEDLFR DKAYVVLGQFLVLKKDEDLFREWLKDTCGA LGQFLVLKKDEDLFREWLKDTCGANAKQSR K D E F R E 0 1 0 2 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 6 0 793.36063 A0A024R5H0;O75531;B2R4V4;A0A0C4DFW4;B2RC94;A0A024RDZ1;Q5JUR7 A0A024R5H0 55 60 BANF1;TEX30;RP11-484I6.3 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed;Testis-expressed sequence 30 protein yes no 2 0.0325 116 3 0.95201 1.3139 6.2233 3 Median 0.95201 1.3139 6.2233 3 0 Median NaN NaN NaN 0 0 Median 103290000 52950000 50338000 103290000 52950000 50338000 0 0 0 1461 143 1502 5452;5453;5454 8260;8261;8262 8260 3 DEENNPLETEYGLSVYK TTLVAFPSSSVYPTKDEENNPLETEYGLSV ENNPLETEYGLSVYKDHQTITIQEMPEKAP K D E Y K D 0 0 2 1 0 0 4 1 0 0 2 1 0 0 1 1 1 0 2 1 0 0 17 0 1998.9058 Q8NHX6;Q53HJ4;B2R7C5;A0A0S2Z4T1;A0A0S2Z492;P25205;B4DUQ9;J3KQ69;B4DS46 Q8NHX6 178 194 HCC5;MCM3 DNA helicase;DNA replication licensing factor MCM3 yes no 2 3.6754E-07 129.71 4 0.26325 0.33271 10.017 2 Median 0.26325 0.33271 10.017 2 0 Median NaN NaN NaN 0 0 Median 15358000 13005000 2353100 15358000 13005000 2353100 0 0 0 1462 463 1503 5455;5456;5457;5458 8263;8264;8265;8266;8267 8266 5 DEIALVLFGTDGTDNPLSGGDQYQNITVHR VITMFVQRQVFAENKDEIALVLFGTDGTDN PLSGGDQYQNITVHRHLMLPDFDLLEDIES K D E H R H 1 1 2 4 0 2 1 4 1 2 3 0 0 1 1 1 3 0 1 2 0 0 30 0 3244.5636 P13010;Q53TC2;C9JZ81 P13010 52 81 XRCC5 X-ray repair cross-complementing protein 5 yes no 3 4.3963E-12 88.394 4 0.442 0.60576 21.157 4 Median 0.442 0.60576 21.157 4 0 Median NaN NaN NaN 0 0 Median 28631000 18600000 10031000 28631000 18600000 10031000 0 0 0 1463 1262 1504 5459;5460;5461;5462 8268;8269;8270;8271;8272;8273 8269 6 DEIENSIVHR LIRRRRTRIGYSFKKDEIENSIVHRVQGVF YSFKKDEIENSIVHRVQGVFQRASAKWKDD K D E H R V 0 1 1 1 0 0 2 0 1 2 0 0 0 0 0 1 0 0 0 1 0 0 10 0 1210.5942 B3KQ21;Q9NYH9;B4DSL9;B7Z9G4 B3KQ21 82 91 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 0.0030349 68.371 1 0.90923 1.1706 NaN 1 Median NaN NaN NaN 0 0 Median 0.90923 1.1706 NaN 1 0 Median 3752500 2045000 1707500 0 0 0 3752500 2045000 1707500 1464 768 1505 5463 8274 8274 1 DEILPTTPISEQK PKKPLPDHVSIVEPKDEILPTTPISEQKGG PKDEILPTTPISEQKGGKPEPPAMPQPVPT K D E Q K G 0 0 0 1 0 1 2 0 0 2 1 1 0 0 2 1 2 0 0 0 0 0 13 0 1469.7613 P23396;Q53G83;E9PL09;E9PPU1;H0YEU2;Q9NQS8;E9PSF4 P23396 215 227 RPS3 40S ribosomal protein S3 yes no 2 2.8005E-10 111.52 3 2 0.81592 1.0592 53.679 5 Median 0.80965 1.0411 9.2175 3 0 Median 1.6569 2.6342 1.6879 2 0 Median 419710000 197500000 222220000 262750000 139520000 123230000 156960000 57978000 98987000 1465 1293 1506 5464;5465;5466;5467;5468 8275;8276;8277;8278;8279;8280;8281;8282;8283;8284 8277 10 DEKIEELEALLQEAR KESLTSFYQEEIQERDEKIEELEALLQEAR DEKIEELEALLQEARQQSVAHQQSGSELAL R D E A R Q 2 1 0 1 0 1 5 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 15 1 1784.9156 O95235 O95235 645 659 KIF20A Kinesin-like protein KIF20A yes yes 3 1.206E-07 87.519 2 1 0.91251 1.167 26.564 3 Median 0.92392 1.2087 4.9699 2 0 Median 0.45631 0.76607 NaN 1 0 Median 26575000 17975000 8600200 6580200 3718600 2861600 19995000 14257000 5738600 1466 1215 1507 5469;5470;5471 8285;8286;8287 8286 3 DELADEIANSSGK LAAAERAKRQAQQERDELADEIANSSGKGA ERDELADEIANSSGKGALALEEKRRLEARI R D E G K G 2 0 1 2 0 0 2 1 0 1 1 1 0 0 0 2 0 0 0 0 0 0 13 0 1347.6154 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1704 1716 MYH9;FLJ00279 Myosin-9 no no 2 0.023007 48.44 1 0.73104 0.93764 NaN 1 Median 0.73104 0.93764 NaN 1 0 Median NaN NaN NaN 0 0 Median 3322100 1825100 1497000 3322100 1825100 1497000 0 0 0 1467 61;490 1508 5472 8288 8288 0 DELHIVEAEAMNYEGSPIK HQLSLRTVSLGAGAKDELHIVEAEAMNYEG IVEAEAMNYEGSPIKVTLATLKMSVQPTVS K D E I K V 2 0 1 1 0 0 4 1 1 2 1 1 1 0 1 1 0 0 1 1 0 0 19 0 2144.0096 A0A0S2Z4G7;A0A0S2Z491;P06748;A0A140VJQ2;A4ZU86 A0A0S2Z4G7 55 73 NPM1 Nucleophosmin yes no 2;3 1.634E-18 135.29 4 3 0.83867 1.0621 27.588 7 Median 0.67023 0.82802 18.324 4 0 Median 0.84539 1.3542 1.9143 3 0 Median 302690000 170860000 131830000 63734000 40205000 23529000 238960000 130660000 108300000 1468 462 1509;1510 5473;5474;5475;5476;5477;5478;5479 8289;8290;8291;8292;8293;8294;8295;8296;8297;8298;8299;8300;8301;8302 8301 163 14 DELKPAVTQLLWER TIQCLEEILCEFVQKDELKPAVTQLLWERA KDELKPAVTQLLWERATEKVACCPLERCSS K D E E R A 1 1 0 1 0 1 2 0 0 0 3 1 0 0 1 0 1 1 0 1 0 0 14 1 1696.9148 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 746 759 NCAPD2 Condensin complex subunit 1 yes no 3 0.027683 25.054 2 0.30651 0.46156 NaN 1 Median NaN NaN NaN 0 0 Median 0.30651 0.46156 NaN 1 0 Median 10735000 7624800 3110100 0 0 0 10735000 7624800 3110100 1469 757 1511 5480;5481 8303;8304 8303 2 DELLGEKPEVK KHEKRMSKDEERAVKDELLGEKPEVKQKWA RAVKDELLGEKPEVKQKWASRLLAKLRKDI K D E V K Q 0 0 0 1 0 0 3 1 0 0 2 2 0 0 1 0 0 0 0 1 0 0 11 1 1255.666 Q6FI30;B7Z4T6;P08651 Q6FI30 50 60 NFIC Nuclear factor 1;Nuclear factor 1 C-type yes no 2 0.00086744 118.03 3 1 1.0257 1.5587 32.809 3 Median 0.95341 1.1752 39.933 2 0 Median 1.0257 1.5696 NaN 1 0 Median 45326000 26018000 19308000 39996000 23640000 16356000 5329800 2377600 2952200 1470 909 1512 5482;5483;5484;5485 8305;8306;8307;8308 8307 4 DELLSEKPEVK ______________________________ RAVKDELLSEKPEVKQKWASRLLAKLRKDI K D E V K Q 0 0 0 1 0 0 3 0 0 0 2 2 0 0 1 1 0 0 0 1 0 0 11 1 1285.6765 S4R3K4;B1AKN6;B1AKN7;B1AKN5;B4DRN9;B1AKN8;Q12857 S4R3K4 11 21 NFIA Nuclear factor 1;Nuclear factor 1 A-type yes no 2 0.035933 60.434 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2774600 0 2774600 0 0 0 2774600 0 2774600 1471 674 1513 5486 8309 8309 1 DELPYTFAAPESYEELR KGLISGKERAGKATRDELPYTFAAPESYEE LPYTFAAPESYEELRSLLLGRSMEEQLLVV R D E L R S 2 1 0 1 0 0 4 0 0 0 2 0 0 1 2 1 1 0 2 0 0 0 17 0 2028.9317 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 420 436 NOP14 Nucleolar protein 14 yes no 2 0.00065137 86.803 2 0.93234 1.2823 2.9885 2 Median 0.93234 1.2823 2.9885 2 0 Median NaN NaN NaN 0 0 Median 6552500 3279800 3272700 6552500 3279800 3272700 0 0 0 1472 652 1514 5487;5488 8310;8311;8312;8313;8314 8311 5 DELTDLDQSNVTEETPEGEEHHPVADTENK DKRGGSGSHNWGTVKDELTDLDQSNVTEET PEGEEHHPVADTENKENEVEEVKEEGPKEM K D E N K E 1 0 2 4 0 1 7 1 2 0 2 1 0 0 2 1 4 0 0 2 0 0 30 0 3377.4655 Q63HR1;Q5VU21;D3DQ69 Q63HR1 223 252 DKFZp686P17171;SERBP1 yes no 3;4 4.3403E-08 82.849 4 3 0.97233 1.2464 61.945 6 Median 0.82853 1.0541 18.229 4 0 Median 2.4754 3.5994 5.1903 2 0 Median 59883000 24914000 34969000 40239000 20557000 19682000 19644000 4357100 15287000 1473 1578 1515 5489;5490;5491;5492;5493;5494;5495 8315;8316;8317;8318;8319;8320;8321;8322;8323;8324;8325;8326 8316 12 DENIHTSHITQDEFQR MAKPAEEQLDVGQSKDENIHTSHITQDEFQ ENIHTSHITQDEFQRNSDRNMEEHEEMGND K D E Q R N 0 1 1 2 0 2 2 0 2 2 0 0 0 1 0 1 2 0 0 0 0 0 16 0 1968.8926 Q03188;H0Y8J2 Q03188 441 456 CENPC Centromere protein C yes no 3 6.1395E-11 135.61 3 0.65191 0.86818 12.969 3 Median 0.65191 0.86818 12.969 3 0 Median NaN NaN NaN 0 0 Median 44752000 27054000 17698000 44752000 27054000 17698000 0 0 0 1474 1439 1516 5496;5497;5498 8327;8328;8329;8330;8331;8332;8333 8328 7 DEPEDDGYFVPPK KKEKENGFSSPPQIKDEPEDDGYFVPPKED IKDEPEDDGYFVPPKEDIKPLKRPRDEDDA K D E P K E 0 0 0 3 0 0 2 1 0 0 0 1 0 1 3 0 0 0 1 1 0 0 13 0 1506.6515 P11387;B9EG90;Q6PK95;Q6NWZ5 P11387 118 130 TOP1 DNA topoisomerase 1 yes no 2 0.0040442 84.687 2 2 0.77496 1.1467 15.756 4 Median 0.77662 0.98243 20.951 2 0 Median 0.77496 1.1691 1.8127 2 0 Median 32721000 17889000 14833000 7304100 3544900 3759200 25417000 14344000 11073000 1475 1255 1517 5499;5500;5501;5502 8334;8335;8336;8337;8338;8339;8340 8335 7 DEPTGEVLSLVGK LVLQADRSLIDRTRRDEPTGEVLSLVGKLE RRDEPTGEVLSLVGKLEGTRMGDKAQRTKP R D E G K L 0 0 0 1 0 0 2 2 0 0 2 1 0 0 1 1 1 0 0 2 0 0 13 0 1342.698 O75643 O75643 34 46 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.00029955 97.813 3 2 0.95145 1.3199 36.835 4 Median 0.76126 0.96503 2.1591 2 0 Median 1.2059 1.824 3.613 2 0 Median 41090000 23944000 17146000 16905000 11138000 5766800 24185000 12806000 11379000 1476 1206 1518 5503;5504;5505;5506;5507 8341;8342;8343;8344;8345;8346 8342 5 DEREGNSPSFFNPEEAATVTSYLK PRQGFPIIFHGVMGKDEREGNSPSFFNPEE FFNPEEAATVTSYLKLLLAPSSKKGKARLS K D E L K L 2 1 2 1 0 0 4 1 0 0 1 1 0 2 2 3 2 0 1 1 0 0 24 1 2687.2351 B7Z700;Q5JR04;Q9HCE1;B3KQ43 B7Z700 723 746 MOV10 Putative helicase MOV-10 yes no 3 0.00083039 50.891 1 0.95973 1.2409 NaN 1 Median 0.95973 1.2409 NaN 1 0 Median NaN NaN NaN 0 0 Median 1456100 654940 801190 1456100 654940 801190 0 0 0 1477 916 1519 5508 8347 8347 1 DETEFYLGK REHTALLKIEGVYARDETEFYLGKRCAYVY EGVYARDETEFYLGKRCAYVYKAKNNTVTP R D E G K R 0 0 0 1 0 0 2 1 0 0 1 1 0 1 0 0 1 0 1 0 0 0 9 0 1100.5026 P18077;F8WBS5;F8WB72;C9K025 P18077 37 45 RPL35A 60S ribosomal protein L35a yes no 1;2 0.0002 131.06 5 3 0.66458 0.89066 14.953 8 Median 0.70042 0.92464 6.3825 5 0 Median 0.4226 0.66727 14.596 3 0 Median 950440000 560560000 389880000 824940000 475300000 349640000 125500000 85263000 40238000 1478 1280 1520 5509;5510;5511;5512;5513;5514;5515;5516 8348;8349;8350;8351;8352;8353;8354;8355;8356;8357;8358;8359;8360;8361;8362 8348 15 DETEFYLGKR REHTALLKIEGVYARDETEFYLGKRCAYVY GVYARDETEFYLGKRCAYVYKAKNNTVTPG R D E K R C 0 1 0 1 0 0 2 1 0 0 1 1 0 1 0 0 1 0 1 0 0 0 10 1 1256.6037 P18077;F8WBS5;F8WB72;C9K025 P18077 37 46 RPL35A 60S ribosomal protein L35a yes no 2 8.6723E-23 187 5 1 0.72688 0.95977 16.196 5 Median 0.75932 1.0005 6.1497 4 0 Median 0.43034 0.71532 NaN 1 0 Median 234830000 158020000 76808000 202010000 133900000 68115000 32816000 24123000 8692900 1479 1280 1521 5517;5518;5519;5520;5521;5522 8363;8364;8365;8366;8367;8368;8369;8370;8371;8372 8363 9 DETIHIYDMK SAVAVNSRFVVTGSKDETIHIYDMKKKIEH VTGSKDETIHIYDMKKKIEHGALVHHSGTI K D E M K K 0 0 0 2 0 0 1 0 1 2 0 1 1 0 0 0 1 0 1 0 0 0 10 0 1263.5805 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 61 70 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 2 0.0012632 71.614 2 0.66746 0.99788 2.7074 2 Median NaN NaN NaN 0 0 Median 0.66746 0.99788 2.7074 2 0 Median 18500000 11564000 6936100 0 0 0 18500000 11564000 6936100 1480 478 1522 5523;5524 8373;8374;8375 8373 168 3 DETNYGIPQR SASRDKTIIMWKLTRDETNYGIPQRALRGH WKLTRDETNYGIPQRALRGHSHFVSDVVIS R D E Q R A 0 1 1 1 0 1 1 1 0 1 0 0 0 0 1 0 1 0 1 0 0 0 10 0 1191.552 E9KL35;P63244;D6R9Z1;D6R9L0;D6RFX4;B4DVD2;D6RHH4;D6RAC2;D6REE5;D6RFZ9;D6RAU2;E9PD14;B4E0C3;D6RBD0;D6RGK8;D6R909;B4DWC6 E9KL35 48 57 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 3.2091E-11 138.54 4 0.84564 1.1544 5.8132 4 Median 0.84564 1.1544 5.8132 4 0 Median NaN NaN NaN 0 0 Median 132350000 76350000 56002000 132350000 76350000 56002000 0 0 0 1481 1019 1523 5525;5526;5527;5528 8376;8377;8378;8379;8380;8381 8380 6 DETVSDCSPHIANIGR GTMNLGGSLTRQMEKDETVSDCSPHIANIG ETVSDCSPHIANIGRLVEDMENKIRSTLNE K D E G R L 1 1 1 2 1 0 1 1 1 2 0 0 0 0 1 2 1 0 0 1 0 0 16 0 1769.8003 B1AK87;B2R7T8;B1AK88;B4DWA6;P47756;B1AK85;Q7L4N0 B1AK87 188 203 CAPZB F-actin-capping protein subunit beta yes no 2;3 4.7906E-60 195.77 8 0.80158 1.1106 12.228 8 Median 0.80158 1.1106 12.228 8 0 Median NaN NaN NaN 0 0 Median 78405000 42905000 35500000 78405000 42905000 35500000 0 0 0 1482 672 1524 5529;5530;5531;5532;5533;5534;5535;5536 8382;8383;8384;8385;8386;8387;8388;8389;8390;8391;8392;8393;8394;8395;8396;8397;8398 8384 17 DEVASLLFDPK QRLALPQSDASLLSRDEVASLLFDPKEAAT LLSRDEVASLLFDPKEAATIDRDTAFAIGC R D E P K E 1 0 0 2 0 0 1 0 0 0 2 1 0 1 1 1 0 0 0 1 0 0 11 0 1232.6289 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;Q6P664 B2RWN5 24 34 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 1.2393E-05 112.3 4 2 0.87543 1.1016 7.2536 5 Median 0.89148 1.1175 3.6848 3 0 Median 0.65774 1.0017 1.2697 2 0 Median 95353000 50443000 44910000 51083000 27118000 23965000 44271000 23325000 20945000 1483 748 1525 5537;5538;5539;5540;5541;5542 8399;8400;8401;8402;8403;8404;8405;8406;8407;8408;8409 8408 11 DEYTFSPGK NDGEDEFVPSDGLDKDEYTFSPGKSKASPE SDGLDKDEYTFSPGKSKASPEKSLHDKKSQ K D E G K S 0 0 0 1 0 0 1 1 0 0 0 1 0 1 1 1 1 0 1 0 0 0 9 0 1042.4607 Q71UH4;Q02880;Q59H80;B4DLV2;Q8WTY5;B7ZB27 Q71UH4 1391 1399 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.027375 47.198 1 0.47379 0.63133 NaN 1 Median NaN NaN NaN 0 0 Median 0.47379 0.63133 NaN 1 0 Median 2474500 1414700 1059800 0 0 0 2474500 1414700 1059800 1484 1437 1526 5543 8410 8410 1 DFAAEVVHPGDLK WGGNKTYTAYVDLEKDFAAEVVHPGDLKNS EKDFAAEVVHPGDLKNSVEVALNKLLDPIR K D F L K N 2 0 0 2 0 0 1 1 1 0 1 1 0 1 1 0 0 0 0 2 0 0 13 0 1396.6987 A0A0S2Z4R1;P54577;A0A0C4DGZ5 A0A0S2Z4R1 298 310 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 8.5961E-17 148.28 3 1 0.32396 0.42225 10.823 3 Median 0.32396 0.42225 10.823 3 0 Median NaN NaN NaN 0 0 Median 29889000 17619000 12270000 24170000 17619000 6551500 5718900 0 5718900 1485 468 1527 5544;5545;5546;5547 8411;8412;8413;8414;8415;8416;8417;8418;8419 8417 9 DFDGLVQVIIPQDESAASVK GWIQCRRQNTFLVLRDFDGLVQVIIPQDES VQVIIPQDESAASVKKILCEAPVESVVQVS R D F V K K 2 0 0 3 0 2 1 1 0 2 1 1 0 1 1 2 0 0 0 3 0 0 20 0 2130.0845 A8K4A8;A0A024R8Z9;Q6PI48 A8K4A8 85 104 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 2 0.00012744 83.499 2 0.37458 0.4784 NaN 1 Median 0.37458 0.4784 NaN 1 0 Median NaN NaN NaN 0 0 Median 4010900 2780400 1230500 4010900 2780400 1230500 0 0 0 1486 209 1528 5548;5549 8420;8421;8422 8422 3 DFDREVEIR KTNSLRRRKLASFLKDFDREVEIRIKQIES LASFLKDFDREVEIRIKQIESDRQNLLKEV K D F I R I 0 2 0 2 0 0 2 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 9 1 1177.5728 A8K7A2;Q53HL2 A8K7A2 27 35 CDCA8 Borealin yes no 2;3 0.0016027 109.29 5 2 0.85592 1.1466 15.019 6 Median 0.9419 1.2678 9.8977 4 0 Median 0.63467 0.94338 3.3126 2 0 Median 253830000 124880000 128960000 223900000 107200000 116700000 29927000 17672000 12255000 1487 632 1529 5550;5551;5552;5553;5554;5555;5556 8423;8424;8425;8426;8427;8428;8429;8430;8431 8426 9 DFEASFIR KIRKIRARDDNPGLRDFEASFIRLLDKITN DDNPGLRDFEASFIRLLDKITNGSRIEINQ R D F I R L 1 1 0 1 0 0 1 0 0 1 0 0 0 2 0 1 0 0 0 0 0 0 8 0 983.47125 Q9Y2P8;Q5VYW8 Q9Y2P8 46 53 RCL1 RNA 3-terminal phosphate cyclase-like protein yes no 2 0.0088352 77.058 2 0.75452 1.0865 1.6861 2 Median NaN NaN NaN 0 0 Median 0.75452 1.0865 1.6861 2 0 Median 25764000 14243000 11521000 0 0 0 25764000 14243000 11521000 1488 1806 1530 5557;5558 8432;8433 8432 2 DFEPILEQQIHQDDFGESK VLLATGQQTLIMMTKDFEPILEQQIHQDDF ILEQQIHQDDFGESKFITVGWGRKETQFHG K D F S K F 0 0 0 3 0 3 3 1 1 2 1 1 0 2 1 1 0 0 0 0 0 0 19 0 2274.0441 Q4LE38;O95163;B4E3I9;Q8N516 Q4LE38 149 167 IKBKAP variant protein;IKBKAP Elongator complex protein 1 yes no 3 0.01097 24.3 1 0.38146 0.48579 NaN 1 Median 0.38146 0.48579 NaN 1 0 Median NaN NaN NaN 0 0 Median 6825800 4465000 2360700 6825800 4465000 2360700 0 0 0 1489 1213 1531 5559 8434;8435 8434 2 DFFELR VGCLKKYDTVLDILRDFFELRLKYYGLRKE YDTVLDILRDFFELRLKYYGLRKEWLLGML R D F L R L 0 1 0 1 0 0 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 6 0 825.4021 P11388 P11388 1021 1026 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.04521 74.597 1 0.89289 1.2031 NaN 1 Median 0.89289 1.2031 NaN 1 0 Median NaN NaN NaN 0 0 Median 40182000 21904000 18278000 40182000 21904000 18278000 0 0 0 1490 1256 1532 5560 8436 8436 1 DFFQSYGNVVELR FIGNLPHEVDKSELKDFFQSYGNVVELRIN LKDFFQSYGNVVELRINSGGKLPNFGFVVF K D F L R I 0 1 1 1 0 1 1 1 0 0 1 0 0 2 0 1 0 0 1 2 0 0 13 0 1572.7573 B7Z8K4;Q6FI03;Q5U0Q1;Q53HH4;Q13283;Q6ZP53;Q32P45 B7Z8K4 176 188 G3BP;DKFZp686L1159;G3BP1 Ras GTPase-activating protein-binding protein 1 yes no 2 0.00058163 95.401 4 1 0.46264 0.64818 NaN 1 Median 0.46264 0.64818 NaN 1 0 Median NaN NaN NaN 0 0 Median 11599000 7881300 3717800 8636800 7881300 755550 2962300 0 2962300 1491 918 1533 5561;5562;5563;5564;5565 8437;8438;8439;8440;8441;8442;8443 8442 7 DFGECVIALQASVIKK TSEFEARVISLEKLKDFGECVIALQASVIK FGECVIALQASVIKKFLQGFMAPKQKRRKL K D F K K F 2 0 0 1 1 1 1 1 0 2 1 2 0 1 0 1 0 0 0 2 0 0 16 1 1776.9444 Q9UIG0 Q9UIG0 1092 1107 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 7.5536E-06 117.93 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5913300 0 5913300 5913300 0 5913300 0 0 0 1492 1786 1534 5566;5567 8444;8445 8445 2 DFGEEHPFYDR QLLNTLTKKQKKHLRDFGEEHPFYDRVSRE KHLRDFGEEHPFYDRVSREEAKPQICQLSE R D F D R V 0 1 0 2 0 0 2 1 1 0 0 0 0 2 1 0 0 0 1 0 0 0 11 0 1410.584 A8K0P8;Q68CQ4 A8K0P8 26 36 DIEXF Digestive organ expansion factor homolog yes no 3 0.043765 22.917 1 0.38045 0.48703 NaN 1 Median NaN NaN NaN 0 0 Median 0.38045 0.48703 NaN 1 0 Median 2165000 1476800 688200 0 0 0 2165000 1476800 688200 1493 577 1535 5568 8446 8446 1 DFGLLVFVR SPAVLALQTSLVFSRDFGLLVFVRKSLNSI SLVFSRDFGLLVFVRKSLNSIEFRECREEI R D F V R K 0 1 0 1 0 0 0 1 0 0 2 0 0 2 0 0 0 0 0 2 0 0 9 0 1064.6019 P78527 P78527 62 70 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 2.1425E-05 102.72 5 0.42665 0.59016 5.0941 3 Median 0.42665 0.59016 5.0941 3 0 Median NaN NaN NaN 0 0 Median 26239000 20676000 5562800 26239000 20676000 5562800 0 0 0 1494 1427 1536 5569;5570;5571;5572;5573 8447;8448;8449;8450;8451;8452;8453;8454 8452 8 DFGYVCETEFPAK LLTSLVEGEAVHLARDFGYVCETEFPAKAV ARDFGYVCETEFPAKAVAEFLNRQHSDPNE R D F A K A 1 0 0 1 1 0 2 1 0 0 0 1 0 2 1 0 1 0 1 1 0 0 13 0 1561.6759 Q96SH1;P05549;Q6VUC0 Q96SH1 305 317 TFAP2A;TFAP2E Transcription factor AP-2-alpha;Transcription factor AP-2-epsilon yes no 2 0.00041372 103.34 4 0.65529 0.85366 4.5159 3 Median 0.65529 0.85366 4.5159 3 0 Median NaN NaN NaN 0 0 Median 21161000 14533000 6627700 21161000 14533000 6627700 0 0 0 1495 1238 1537 5574;5575;5576;5577 8455;8456;8457;8458;8459;8460;8461 8457 7 DFHLIQANK EECRNFEQGLKAYGKDFHLIQANKVRTRSV LKAYGKDFHLIQANKVRTRSVGECVAFYYM K D F N K V 1 0 1 1 0 1 0 0 1 1 1 1 0 1 0 0 0 0 0 0 0 0 9 0 1084.5665 Q8N108 Q8N108 306 314 MIER1 Mesoderm induction early response protein 1 yes yes 2 0.0018021 91.853 1 0.90723 1.1293 NaN 1 Median 0.90723 1.1293 NaN 1 0 Median NaN NaN NaN 0 0 Median 16566000 6054200 10512000 16566000 6054200 10512000 0 0 0 1496 1633 1538 5578 8462;8463;8464 8463 3 DFIDLTLSK AHYNFKKITVVPSAKDFIDLTLSKTQRKTP VVPSAKDFIDLTLSKTQRKTPTVIHKHYQI K D F S K T 0 0 0 2 0 0 0 0 0 1 2 1 0 1 0 1 1 0 0 0 0 0 9 0 1050.5597 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;O60747 Q53GS0 17 25 GTPBP4 Nucleolar GTP-binding protein 1 yes no 1;2 1.5439E-08 209.58 8 1 0.76325 1.011 19.074 8 Median 0.76889 0.97556 20.397 7 0 Median 0.6721 1.0513 NaN 1 0 Median 316090000 177400000 138690000 230180000 127220000 102960000 85907000 50181000 35726000 1497 975 1539 5579;5580;5581;5582;5583;5584;5585;5586;5587 8465;8466;8467;8468;8469;8470;8471;8472;8473;8474;8475;8476;8477;8478;8479 8465 15 DFIEDYVDILR LHALCGKLLTLVSTRDFIEDYVDILRQAKQ VSTRDFIEDYVDILRQAKQEFRELKAEQHR R D F L R Q 0 1 0 3 0 0 1 0 0 2 1 0 0 1 0 0 0 0 1 1 0 0 11 0 1396.6874 D3DS96;Q9NRL2;Q59G54;A0A087WWN7 D3DS96 631 641 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 1.5303E-05 114.4 5 0.45109 0.62311 15.182 3 Median 0.45109 0.62311 15.182 3 0 Median NaN NaN NaN 0 0 Median 25738000 18413000 7324400 25738000 18413000 7324400 0 0 0 1498 979 1540 5588;5589;5590;5591;5592 8480;8481;8482;8483;8484;8485;8486;8487 8484 8 DFIHDSLPPVLTDR GHFAPVDAVADQRAKDFIHDSLPPVLTDRE KDFIHDSLPPVLTDRERALSVYGLPIRWEA K D F D R E 0 1 0 3 0 0 0 0 1 1 2 0 0 1 2 1 1 0 0 1 0 0 14 0 1623.8257 A0A0A8K8C0;Q9H6W3 A0A0A8K8C0 504 517 URLC2;NO66 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 yes no 3 0.016597 53.869 2 0.5975 0.82834 15.634 2 Median 0.5975 0.82834 15.634 2 0 Median NaN NaN NaN 0 0 Median 6197600 3459300 2738300 6197600 3459300 2738300 0 0 0 1499 411 1541 5593;5594 8488;8489 8488 2 DFIHDSLPPVLTDRER GHFAPVDAVADQRAKDFIHDSLPPVLTDRE FIHDSLPPVLTDRERALSVYGLPIRWEAGE K D F E R A 0 2 0 3 0 0 1 0 1 1 2 0 0 1 2 1 1 0 0 1 0 0 16 1 1908.9694 A0A0A8K8C0;Q9H6W3 A0A0A8K8C0 504 519 URLC2;NO66 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 yes no 3 0.025846 23.138 1 0.70789 0.92137 NaN 1 Median 0.70789 0.92137 NaN 1 0 Median NaN NaN NaN 0 0 Median 8489800 5460100 3029700 8489800 5460100 3029700 0 0 0 1500 411 1542 5595 8490;8491 8491 2 DFIILSCVR EVEIASVDAFQGREKDFIILSCVRANEHQG FQGREKDFIILSCVRANEHQGIGFLNDPRR K D F V R A 0 1 0 1 1 0 0 0 0 2 1 0 0 1 0 1 0 0 0 1 0 0 9 0 1121.5903 A0A024R7L5;A0A024R7L8;Q92900;B3KY55 A0A024R7L5 835 843 UPF1 Regulator of nonsense transcripts 1 yes no 2 0.024802 52.482 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2057400 2057400 0 2057400 2057400 0 0 0 0 1501 180 1543 5596;5597 8492;8493 8492 2 DFILPISDVR HLSLSHQPDKKGVPRDFILPISDVRASIGA KGVPRDFILPISDVRASIGAGFIYPLVGTM R D F V R A 0 1 0 2 0 0 0 0 0 2 1 0 0 1 1 1 0 0 0 1 0 0 10 0 1173.6394 A0A087WVM4;B7ZM99;Q6UB35;B2RD24;Q4VXM1;Q4VXM0;Q8WX68 A0A087WVM4 861 870 MTHFD1L;bA251O17.4 Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 2 0.017422 84.615 2 0.40413 0.54927 NaN 1 Median 0.40413 0.54927 NaN 1 0 Median NaN NaN NaN 0 0 Median 4167900 2915900 1252000 4167900 2915900 1252000 0 0 0 1502 348 1544 5598;5599 8494;8495 8495 2 DFISVLR SMRKRAKLISTVSKKDFISVLRGMDGSTNE LISTVSKKDFISVLRGMDGSTNETASSRKK K D F L R G 0 1 0 1 0 0 0 0 0 1 1 0 0 1 0 1 0 0 0 1 0 0 7 0 848.4756 Q9Y3B9;A8K201 Q9Y3B9 209 215 RRP15 RRP15-like protein yes no 2 0.051714 50.025 1 0.55286 0.8398 NaN 1 Median NaN NaN NaN 0 0 Median 0.55286 0.8398 NaN 1 0 Median 19175000 11740000 7434900 0 0 0 19175000 11740000 7434900 1503 1816 1545 5600 8496 8496 1 DFKPGDLIFAK ______________________________ ______________________________ R D F A K M 1 0 0 2 0 0 0 1 0 1 1 2 0 2 1 0 0 0 0 0 0 0 11 1 1249.6707 O75475;Q05CM9;Q8N4N4 O75475 4 14 PSIP1 PC4 and SFRS1-interacting protein yes no 3 0.0095786 31.843 1 1 0.50886 0.66829 39.228 2 Median 0.75786 0.88193 NaN 1 0 Median 0.34167 0.50641 NaN 1 0 Median 6798300 4443700 2354600 2910500 1721500 1189100 3887700 2722200 1165600 1504 1201 1546 5601;5602 8497;8498 8497 2 DFLAGGIAAAISK ______________________________ AKDFLAGGIAAAISKTAVAPIERVKLLLQV K D F S K T 4 0 0 1 0 0 0 2 0 2 1 1 0 1 0 1 0 0 0 0 0 0 13 0 1232.6765 Q6I9V5;Q59EI9;P12236 Q6I9V5 11 23 SLC25A6 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed yes no 2 7.0223E-05 79.82 2 1 0.5921 0.74584 6.8155 2 Median 0.5921 0.74584 6.8155 2 0 Median NaN NaN NaN 0 0 Median 18162000 9257300 8904900 15409000 9257300 6151900 2753000 0 2753000 1505 1260 1547 5603;5604;5605 8499;8500;8501 8500 3 DFLAGGVAAAISK ASSFNMTDAAVSFAKDFLAGGVAAAISKTA AKDFLAGGVAAAISKTAVAPIERVKLLLQV K D F S K T 4 0 0 1 0 0 0 2 0 1 1 1 0 1 0 1 0 0 0 1 0 0 13 0 1218.6608 Q6NVC0;P05141 Q6NVC0 36 48 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes no 2 0.0093339 73.632 3 2 0.51764 0.65667 7.2463 3 Plateau 0.51764 0.65667 7.2463 3 0 Plateau NaN NaN NaN 0 0 Median 38384000 17429000 20955000 26905000 17429000 9475300 11480000 0 11480000 1506 1234 1548 5606;5607;5608;5609;5610 8502;8503;8504;8505;8506;8507 8504 5 DFLDEHYDIPK SDNGIHHCKEGILIKDFLDEHYDIPKISMV ILIKDFLDEHYDIPKISMVNNIIHNNEGYG K D F P K I 0 0 0 3 0 0 1 0 1 1 1 1 0 1 1 0 0 0 1 0 0 0 11 0 1390.6405 B2RDX0;A8K7Z9;A0A024R6R1;Q8NEM2 B2RDX0 518 528 SHCBP1 SHC SH2 domain-binding protein 1 yes no 2 0.0019252 106.88 1 0.32959 0.4298 NaN 1 Median 0.32959 0.4298 NaN 1 0 Median NaN NaN NaN 0 0 Median 2195000 1671500 523550 2195000 1671500 523550 0 0 0 1507 163 1549 5611 8508 8508 1 DFLDGVYAFEYYPSTPGR TMKGPKGLEELVKQKDFLDGVYAFEYYPST DGVYAFEYYPSTPGRYSIAITWGGHHIPKS K D F G R Y 1 1 0 2 0 0 1 2 0 0 1 0 0 2 2 1 1 0 3 1 0 0 18 0 2095.9527 O75369;A0A024R321;Q68CT4;E7EN95 O75369 505 522 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.0032937 95.428 2 1.1456 1.547 NaN 1 Median 1.1456 1.547 NaN 1 0 Median NaN NaN NaN 0 0 Median 3735400 2330800 1404600 3735400 2330800 1404600 0 0 0 1508 1199 1550 5612;5613 8509;8510 8509 2 DFLIPIGK MYGVPFEFPPEAQSKDFLIPIGKAKIERQG PPEAQSKDFLIPIGKAKIERQGRLPHSSAH K D F G K A 0 0 0 1 0 0 0 1 0 2 1 1 0 1 1 0 0 0 0 0 0 0 8 0 901.5273 F8WF02;P11177;C9J634;Q59G68 F8WF02 220 227 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 2 0.019112 58.981 1 0.36169 0.4649 NaN 1 Median 0.36169 0.4649 NaN 1 0 Median NaN NaN NaN 0 0 Median 4511800 2621200 1890600 4511800 2621200 1890600 0 0 0 1509 1074 1551 5614 8511;8512 8512 2 DFLLKPELLR DIKGSYVSIHSSGFRDFLLKPELLRAIVDC SSGFRDFLLKPELLRAIVDCGFEHPSEVQH R D F L R A 0 1 0 1 0 0 1 0 0 0 4 1 0 1 1 0 0 0 0 0 0 0 10 1 1242.7336 A0A024RCM3;Q13838;Q5STU3;F6WLT2;F6S4E6;A0A0A0MT12;F6TRA5;Q59G92;F6QYI9;A0A0G2JJL7;F6R6M7;Q7KYK3;A0A0G2JHN7;F6U6E2;F6S2B7;F6SXL5;B4DH55;O00148;B4DX78;K7EQN7;A0A024R7H0;K7EPJ3;K7EN69;K7ENP6;K7EL56;K7EIL8;B4DF34 O00148 48 57 hCG_2005638;DDX39B;BAT1;DDX39A;DDX39 Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A no no 2;3 0.00022744 96.948 2 1 0.41938 0.55055 130.89 3 Median 0.34624 0.45387 27.31 2 0 Median 2.6126 4.2728 NaN 1 0 Median 57506000 34174000 23332000 38661000 29067000 9594500 18844000 5106700 13737000 1510 1164;296 1552 5615;5616;5617 8513;8514;8515;8516 8515 4 DFLLNYPFSTSVK RQIYGYDSRFSIFGKDFLLNYPFSTSVKLS GKDFLLNYPFSTSVKLSTGCTGTLVAEKHV K D F V K L 0 0 1 1 0 0 0 0 0 0 2 1 0 2 1 2 1 0 1 1 0 0 13 0 1529.7766 B3KQQ9;O95084 B3KQQ9 143 155 PRSS23 Serine protease 23 yes no 2 0.010244 80.979 2 0.8751 1.1461 NaN 1 Median 0.8751 1.1461 NaN 1 0 Median NaN NaN NaN 0 0 Median 3368200 2564300 803930 3368200 2564300 803930 0 0 0 1511 771 1553 5618;5619 8517;8518 8518 2 DFLLTAR ______________________________ PRKIEEIKDFLLTARRKDAKSVKIKKNKDN K D F A R R 1 1 0 1 0 0 0 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 7 0 834.45995 A0A024R8P8;P63173;J3KT73;J3QL01;J3KSP2 A0A024R8P8 10 16 RPL38 60S ribosomal protein L38 yes no 2 0.0261 76.847 3 1 0.74607 0.99643 36.032 3 Median 0.73487 0.98717 1.3199 2 0 Median 1.2852 1.8422 NaN 1 0 Median 71124000 30743000 40382000 60346000 25959000 34387000 10779000 4784100 5994600 1512 201 1554 5620;5621;5622;5623 8519;8520;8521;8522 8520 4 DFLQEVCLRPSADPIFEPR GIREKALHKHLNKHRDFLQEVCLRPSADPI EVCLRPSADPIFEPRQLPAFQEGIMSWSPK R D F P R Q 1 2 0 2 1 1 2 0 0 1 2 0 0 2 3 1 0 0 0 1 0 0 19 1 2288.126 J3QK86;J3KPG5;F8VU39;Q9UIF9;A0A0C4DGI9;H0YHL2 J3QK86 1442 1460 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 3 0.0038698 22.01 1 1.2268 1.6384 NaN 1 Median NaN NaN NaN 0 0 Median 1.2268 1.6384 NaN 1 0 Median 4115500 1848200 2267300 0 0 0 4115500 1848200 2267300 1513 1062 1555 5624 8523 8523 1 DFLQGSSCIAGIYNETTK ESGQISYDEVGERIKDFLQGSSCIAGIYNE QGSSCIAGIYNETTKQKLGIYEAMKIGLVR K D F T K Q 1 0 1 1 1 1 1 2 0 2 1 1 0 1 0 2 2 0 1 0 0 0 18 0 2002.9306 P15924;Q4LE79 P15924 2252 2269 DSP;DSP variant protein Desmoplakin yes no 2 1.5695E-05 121.31 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7126000 7126000 0 7126000 7126000 0 0 0 0 1514 1270 1556 5625;5626;5627 8524;8525;8526;8527 8524 4 DFLQLVEPGGGGSANSLR EAAPAAPPGPKLWYRDFLQLVEPGGGGSAN QLVEPGGGGSANSLRMCRPQPALQSLPLES R D F L R M 1 1 1 1 0 1 1 4 0 0 3 0 0 1 1 2 0 0 0 1 0 0 18 0 1815.9115 A0A0C4DGV8;A0A1S5UZH6;Q13214;B4DEK9;Q59FY7;Q6PI51 A0A0C4DGV8 696 713 SEMA3B Semaphorin-3B yes no 2 0.0066448 42.209 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1834900 1834900 0 1834900 1834900 0 0 0 0 1515 430 1557 5628 8528 8528 1 DFLSCRPTEIPENDILLCESR PMTCILGKCAVLSFKDFLSCRPTEIPENDI PTEIPENDILLCESRYNESDKQMKKFKGLK K D F S R Y 0 2 1 2 2 0 3 0 0 2 3 0 0 1 2 2 1 0 0 0 0 0 21 1 2563.2047 Q86U86;E7EVG2;Q5EBM5 Q86U86 1240 1260 PBRM1;PB1 Protein polybromo-1 yes no 3 3.9551E-05 57.986 4 0.59716 0.78824 35.493 4 Median 0.59716 0.78824 35.493 4 0 Median NaN NaN NaN 0 0 Median 25777000 14659000 11118000 25777000 14659000 11118000 0 0 0 1516 1620 1558 5629;5630;5631;5632 8529;8530;8531;8532;8533;8534;8535 8534 7 DFNHINVELSLLGK GRTVIVKGPRGTLRRDFNHINVELSLLGKK RDFNHINVELSLLGKKKKRLRVDKWWGNRK R D F G K K 0 0 2 1 0 0 1 1 1 1 3 1 0 1 0 1 0 0 0 1 0 0 14 0 1597.8464 Q53Z07;P32969;H0Y9V9;D6RAN4;E7ESE0;B4E1M5;B4DLV8 Q53Z07 37 50 RPL9 60S ribosomal protein L9 yes no 2;3 1.127E-77 219.97 10 4 1.0783 0.98294 29.306 11 Linear 0.72934 1.5997 37.154 7 0 Linear 0.61632 0.98484 9.0943 4 0 Median 1296600000 736050000 560560000 1151000000 645800000 505220000 145590000 90245000 55342000 1517 1314 1559 5633;5634;5635;5636;5637;5638;5639;5640;5641;5642;5643;5644;5645;5646 8536;8537;8538;8539;8540;8541;8542;8543;8544;8545;8546;8547;8548;8549;8550;8551;8552;8553;8554;8555 8544 19 DFNHINVELSLLGKK GRTVIVKGPRGTLRRDFNHINVELSLLGKK DFNHINVELSLLGKKKKRLRVDKWWGNRKE R D F K K K 0 0 2 1 0 0 1 1 1 1 3 2 0 1 0 1 0 0 0 1 0 0 15 1 1725.9414 Q53Z07;P32969;H0Y9V9;D6RAN4;E7ESE0;B4E1M5;B4DLV8 Q53Z07 37 51 RPL9 60S ribosomal protein L9 yes no 3 4.2041E-05 95.755 4 0.87444 1.0782 10.049 3 Plateau 0.87444 1.0782 10.049 3 0 Plateau NaN NaN NaN 0 0 Median 56693000 30824000 25869000 56693000 30824000 25869000 0 0 0 1518 1314 1560 5647;5648;5649;5650 8556;8557;8558;8559;8560;8561 8558 6 DFPLSGYVELR RILTDYGFEGHPFRKDFPLSGYVELRYDDE PFRKDFPLSGYVELRYDDEVKRVVAEPVEL K D F L R Y 0 1 0 1 0 0 1 1 0 0 2 0 0 1 1 1 0 0 1 1 0 0 11 0 1294.6558 Q9UF24;Q53FM7;O75489 Q9UF24 127 137 DKFZp586K0821;NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes no 2 0.0057574 54.416 1 0.5028 0.68309 NaN 1 Median 0.5028 0.68309 NaN 1 0 Median NaN NaN NaN 0 0 Median 3543200 2442100 1101100 3543200 2442100 1101100 0 0 0 1519 1202 1561 5651 8562 8562 1 DFQAISDVIGNK EEQLLAVQAIRKYGRDFQAISDVIGNKSVV YGRDFQAISDVIGNKSVVQVKNFFVNYRRR R D F N K S 1 0 1 2 0 1 0 1 0 2 0 1 0 1 0 1 0 0 0 1 0 0 12 0 1305.6565 Q9UKL0 Q9UKL0 404 415 RCOR1 REST corepressor 1 yes yes 2 0.029962 79.201 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1549000 1549000 0 1549000 1549000 0 0 0 0 1520 1788 1562 5652 8563 8563 1 DFQSGQHVIVR TDELSLTNCAVVNEKDFQSGQHVIVRTSPN VNEKDFQSGQHVIVRTSPNHRYTFTLKTHP K D F V R T 0 1 0 1 0 2 0 1 1 1 0 0 0 1 0 1 0 0 0 2 0 0 11 0 1284.6575 B4DGR3;I3L0N3;B7Z5J7;P46459;I3L0L3;I3L338;I3L4Q9 B4DGR3 28 38 NSF Vesicle-fusing ATPase yes no 2 0.0094482 110.53 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1853600 1853600 0 1853600 1853600 0 0 0 0 1521 805 1563 5653;5654 8564;8565 8564 2 DFSALESQLQDTQELLQEENRQK GLLSQSDSKSSKLTKDFSALESQLQDTQEL LQDTQELLQEENRQKLSLSTKLKQVEDEKN K D F Q K L 1 1 1 2 0 5 4 0 0 0 4 1 0 1 0 2 1 0 0 0 0 0 23 1 2748.3202 A0A024R1N1;P35579;Q86XU5;A0A0U4BW16 A0A024R1N1 1302 1324 MYH9 Myosin-9 no no 3 4.2408E-48 159.06 4 1.1169 1.4562 13.698 4 Median 1.1169 1.4562 13.698 4 0 Median NaN NaN NaN 0 0 Median 117840000 55572000 62272000 117840000 55572000 62272000 0 0 0 1522 61;490 1564 5655;5656;5657;5658 8566;8567;8568;8569;8570;8571 8570 6 DFSAPTLEDHFNK RGAFFMDEDEEVYKRDFSAPTLEDHFNKTI KRDFSAPTLEDHFNKTILPKVMQVKNFGRS R D F N K T 1 0 1 2 0 0 1 0 1 0 1 1 0 2 1 1 1 0 0 0 0 0 13 0 1519.6943 P55081 P55081 359 371 MFAP1 Microfibrillar-associated protein 1 yes yes 2 0.014768 46.001 1 0.58094 0.71767 NaN 1 Median 0.58094 0.71767 NaN 1 0 Median NaN NaN NaN 0 0 Median 3911300 2340700 1570700 3911300 2340700 1570700 0 0 0 1523 1377 1565 5659 8572;8573 8573 2 DFSASYFSGEQEVTPSR PSHLSSNSQRTPIRRDFSASYFSGEQEVTP SASYFSGEQEVTPSRSTLQIGKRDANSSFF R D F S R S 1 1 0 1 0 1 2 1 0 0 0 0 0 2 1 4 1 0 1 1 0 0 17 0 1905.8381 P49454 P49454 240 256 CENPF Centromere protein F yes yes 2 0.0061215 50.145 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1524 1351 1566 5660;5661 8574;8575 8575 2 DFSDITK LVLAPTRELANQVSKDFSDITKKLSVACFY ELANQVSKDFSDITKKLSVACFYGGTPYGG K D F T K K 0 0 0 2 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 7 0 824.3916 Q9NR30 Q9NR30 279 285 DDX21 Nucleolar RNA helicase 2 yes yes 1;2 0.031125 87.323 2 0.81261 1.0482 22.014 2 Median 0.81261 1.0482 22.014 2 0 Median NaN NaN NaN 0 0 Median 19277000 10912000 8364900 19277000 10912000 8364900 0 0 0 1525 1756 1567 5662;5663 8576;8577 8577 1 DFSDITKK LVLAPTRELANQVSKDFSDITKKLSVACFY LANQVSKDFSDITKKLSVACFYGGTPYGGQ K D F K K L 0 0 0 2 0 0 0 0 0 1 0 2 0 1 0 1 1 0 0 0 0 0 8 1 952.48656 Q9NR30 Q9NR30 279 286 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.016829 66.351 1 1 0.53296 0.74 3.6339 2 Median 0.58661 0.72123 NaN 1 0 Median 0.48422 0.75926 NaN 1 0 Median 18698000 11360000 7337800 8162100 4620100 3542000 10535000 6739600 3795800 1526 1756 1568 5664;5665 8578;8579 8579 2 DFSIHR LTAQWLPDVTRPEGKDFSIHRLVLGTHTSD PDVTRPEGKDFSIHRLVLGTHTSDEQNHLV K D F H R L 0 1 0 1 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 0 6 0 773.38204 Q09028;E9PNS6;C9JPP3 Q09028 60 65 RBBP4 Histone-binding protein RBBP4 no no 2 0.03444 83.087 2 0.95938 1.5062 0.79569 2 Median NaN NaN NaN 0 0 Median 0.95938 1.5062 0.79569 2 0 Median 61652000 29623000 32029000 0 0 0 61652000 29623000 32029000 1527 1452 1569 5666;5667 8580;8581 8580 2 DFSPSGIFGAFQR LEVKLGELPSWILMRDFSPSGIFGAFQRGP MRDFSPSGIFGAFQRGPGGTGKPEMDFVRL R D F Q R G 1 1 0 1 0 1 0 2 0 1 0 0 0 3 1 2 0 0 0 0 0 0 13 0 1427.6834 G3V325;B4DJ38;C9JJT5;Q53FE1;P56134 G3V325 28 40 ATP5J2-PTCD1;ATP5J2 ATP synthase subunit f, mitochondrial no no 2 4.7768E-08 98.249 3 0.63798 0.8973 7.9525 3 Median 0.63798 0.8973 7.9525 3 0 Median NaN NaN NaN 0 0 Median 12555000 7436800 5118300 12555000 7436800 5118300 0 0 0 1528 814 1570 5668;5669;5670 8582;8583;8584;8585;8586;8587 8587 6 DFSYHYPSCDLYFVGASSEVYR QSGFYYKTRIPKFGRDFSYHYPSCDLYFVG SCDLYFVGASSEVYRLNLEQGRYLNPLQTD R D F Y R L 1 1 0 2 1 0 1 1 1 0 1 0 0 2 1 4 0 0 4 2 0 0 22 0 2661.1482 Q9BSC4;B4DS83;H7C1Z3 Q9BSC4 139 160 NOL10 Nucleolar protein 10 yes no 3 3.2384E-07 60.032 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6243600 0 6243600 6243600 0 6243600 0 0 0 1529 1710 1571 5671 8588 8588 1 DFTATFGPLDSLNTR VLSAAMYPDVFAHFKDFTATFGPLDSLNTR DFTATFGPLDSLNTRLFLQGPKIAEEFEVE K D F T R L 1 1 1 2 0 0 0 1 0 0 2 0 0 2 1 1 3 0 0 0 0 0 15 0 1653.7999 A0A024R5C5;P11498;E9PS68 A0A024R5C5 1022 1036 PC Pyruvate carboxylase;Pyruvate carboxylase, mitochondrial yes no 2 0.038007 71.176 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2786000 2786000 0 2786000 2786000 0 0 0 0 1530 139 1572 5672 8589 8589 1 DFTDLIVINEDR RGLALKKIIPQCIARDFTDLIVINEDRKTP IARDFTDLIVINEDRKTPNGLILSHLPNGP R D F D R K 0 1 1 3 0 0 1 0 0 2 1 0 0 1 0 0 1 0 0 1 0 0 12 0 1448.7147 Q9H9Y2 Q9H9Y2 191 202 RPF1 Ribosome production factor 1 yes yes 2 3.8648E-08 129.7 3 2 0.75294 1.041 6.9858 4 Median 0.76491 1.058 11.746 2 0 Median 0.75294 1.041 2.4121 2 0 Median 25712000 13982000 11730000 10016000 4505200 5511100 15696000 9476600 6219300 1531 1747 1573 5673;5674;5675;5676;5677 8590;8591;8592;8593;8594;8595;8596;8597 8593 8 DFTDLIVINEDRK RGLALKKIIPQCIARDFTDLIVINEDRKTP ARDFTDLIVINEDRKTPNGLILSHLPNGPT R D F R K T 0 1 1 3 0 0 1 0 0 2 1 1 0 1 0 0 1 0 0 1 0 0 13 1 1576.8097 Q9H9Y2 Q9H9Y2 191 203 RPF1 Ribosome production factor 1 yes yes 2;3 4.705E-17 177.44 5 2 0.74616 0.97731 11.925 7 Median 0.78709 1.0292 9.5178 5 0 Median 0.52001 0.86253 9.2702 2 0 Median 125720000 72839000 52886000 86101000 46777000 39324000 39623000 26061000 13562000 1532 1747 1574 5678;5679;5680;5681;5682;5683;5684 8598;8599;8600;8601;8602;8603;8604;8605;8606;8607;8608;8609;8610 8602 13 DFTQPFIHCTDDSPDPCIEYELVLR SDIFLLFKSSDFITRDFTQPFIHCTDDSPD DDSPDPCIEYELVLRKWCELIPGAEFRCFV R D F L R K 0 1 0 4 2 1 2 0 1 2 2 0 0 2 3 1 2 0 1 1 0 0 25 0 3066.3739 O75794;X6RF82;X6RA30 O75794 143 167 CDC123 Cell division cycle protein 123 homolog yes no 3 4.1148E-05 68.445 1 0.34725 0.48947 NaN 1 Median 0.34725 0.48947 NaN 1 0 Median NaN NaN NaN 0 0 Median 1859400 1358600 500830 1859400 1358600 500830 0 0 0 1533 1208 1575 5685 8611;8612 8612 2 DFTVASPAEFVTR LVKQGRDRKKIDSQRDFTVASPAEFVTRFG QRDFTVASPAEFVTRFGGNKVIEKVLIANN R D F T R F 2 1 0 1 0 0 1 0 0 0 0 0 0 2 1 1 2 0 0 2 0 0 13 0 1438.7092 A0A024R0Y2;B2ZZ90;Q13085;A2NX49;O00763;A0A087WVR6;A0A087X0W4;A0A0C4DGT1;S4R3S7 A0A024R0Y2 21 33 hCG_30204;ACACA;ACACB Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase yes no 2 0.042498 73.632 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1784400 1784400 0 1784400 1784400 0 0 0 0 1534 43 1576 5686 8613 8613 1 DFTVSAMHGDMDQK TRRKVDWLTEKMHARDFTVSAMHGDMDQKE RDFTVSAMHGDMDQKERDVIMREFRSGSSR R D F Q K E 1 0 0 3 0 1 0 1 1 0 0 1 2 1 0 1 1 0 0 1 0 0 14 0 1580.6599 A8K7F6;P60842;A8K088;J3KT12;B4DNH2;J3KSZ0;J3QL52 A8K7F6 296 309 EIF4A1 Eukaryotic initiation factor 4A-I yes no 2 4.1904E-07 91.961 2 2.6693 4.1301 0.41532 2 Median NaN NaN NaN 0 0 Median 2.6693 4.1301 0.41532 2 0 Median 53639000 14780000 38858000 0 0 0 53639000 14780000 38858000 1535 634 1577 5687;5688 8614;8615;8616 8615 213;214 3 DFTVSGNLLFIR SRDAAPLPRPGAVLKDFTVSGNLLFIRLTA VLKDFTVSGNLLFIRLTAADHRQLQLSISS K D F I R L 0 1 1 1 0 0 0 1 0 1 2 0 0 2 0 1 1 0 0 1 0 0 12 0 1380.7402 A4FUI5 A4FUI5 67 78 CTAG2 yes yes 2 2.0532E-12 164.68 4 0.44962 0.62165 2.9059 3 Median 0.44962 0.62165 2.9059 3 0 Median NaN NaN NaN 0 0 Median 25048000 18786000 6262000 25048000 18786000 6262000 0 0 0 1536 554 1578 5689;5690;5691;5692 8617;8618;8619;8620;8621;8622;8623;8624;8625 8619 9 DFVAEPMGEK ______________________________ SQKHRDFVAEPMGEKPVGSLAGIGEVLGKK R D F E K P 1 0 0 1 0 0 2 1 0 0 0 1 1 1 1 0 0 0 0 1 0 0 10 0 1121.5063 A0A024R5H0;O75531;E9PJJ8 A0A024R5H0 9 18 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 2 0.0038833 57.032 2 0.65067 1.0301 2.5499 2 Median NaN NaN NaN 0 0 Median 0.65067 1.0301 2.5499 2 0 Median 193320000 116060000 77261000 0 0 0 193320000 116060000 77261000 1537 143 1579 5693;5694 8626;8627;8628;8629 8627 72 4 DFVAEPMGEKPVGSLAGIGEVLGK ______________________________ KPVGSLAGIGEVLGKKLEERGFDKAYVVLG R D F G K K 2 0 0 1 0 0 3 5 0 1 2 2 1 1 2 1 0 0 0 3 0 0 24 1 2399.2406 A0A024R5H0;O75531 A0A024R5H0 9 32 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 3 1.097E-13 72.033 3 2 0.89721 1.1062 11.546 5 Median 1.0747 1.3286 9.4126 3 0 Plateau 0.6324 1.0272 1.3067 2 0 Median 417620000 249950000 167680000 18764000 9343400 9420900 398860000 240600000 158260000 1538 143 1580;1581 5695;5696;5697;5698;5699 8630;8631;8632;8633;8634;8635;8636 8633 72 7 DFVASIDATYAK NNAFEELVAFQRALKDFVASIDATYAKQYE ALKDFVASIDATYAKQYEEFYVGLEGSFGS K D F A K Q 3 0 0 2 0 0 0 0 0 1 0 1 0 1 0 1 1 0 1 1 0 0 12 0 1299.6347 Q8NHX6;Q53HJ4;B2R7C5;A0A0S2Z4T1;A0A0S2Z492;P25205;B4DUQ9;J3KQ69;B4DS46 Q8NHX6 82 93 HCC5;MCM3 DNA helicase;DNA replication licensing factor MCM3 yes no 2 0.0011163 107.83 3 0.40446 0.50317 NaN 1 Median 0.40446 0.50317 NaN 1 0 Median NaN NaN NaN 0 0 Median 9689100 7169100 2520000 9689100 7169100 2520000 0 0 0 1539 463 1582 5700;5701;5702 8637;8638;8639;8640 8640 4 DFVEDDTTHG NKVSHIDVITAEMAKDFVEDDTTHG_____ AEMAKDFVEDDTTHG_______________ K D F H G - 0 0 0 3 0 0 1 1 1 0 0 0 0 1 0 0 2 0 0 1 0 0 10 0 1134.4465 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 1208 1217 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.0086867 76.774 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5730800 0 0 1540100 0 0 4190600 0 0 1540 663 1583 5703;5704 8641;8642 8642 2 DFVNYLVR GNSTNKKDAQSNAARDFVNYLVRINEIKSE AQSNAARDFVNYLVRINEIKSEEVPAFGVA R D F V R I 0 1 1 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 2 0 0 8 0 1024.5342 Q08211;Q58F26;Q6PJK6 Q08211 64 71 DHX9 ATP-dependent RNA helicase A yes no 1;2 8.9311E-05 130.77 6 2 0.68884 0.91632 14.493 7 Median 0.71624 0.99092 6.6652 5 0 Median 0.47224 0.74471 1.7803 2 0 Median 247600000 141320000 106280000 181540000 96252000 85290000 66054000 45064000 20990000 1541 1448 1584 5705;5706;5707;5708;5709;5710;5711;5712 8643;8644;8645;8646;8647;8648;8649;8650;8651;8652;8653;8654 8650 12 DFVTDADAEVLEHSGK TSSSNPSSPAPDWYKDFVTDADAEVLEHSG FVTDADAEVLEHSGKMVLLFEILRMAEEIG K D F G K M 2 0 0 3 0 0 2 1 1 0 1 1 0 1 0 1 1 0 0 2 0 0 16 0 1731.7952 A4LAA3;P46100;B4DHH8;B4DLE1 A4LAA3 2004 2019 ATRX Transcriptional regulator ATRX yes no 2 1.3636E-11 139.48 4 1 0.71683 0.90662 45.681 3 Median 0.55639 0.70695 35.18 2 0 Median 0.90677 1.3728 NaN 1 0 Median 23953000 16992000 6961100 14790000 11580000 3209900 9163200 5412100 3751100 1542 556 1585 5713;5714;5715;5716;5717 8655;8656;8657;8658;8659;8660;8661 8655 7 DFYAAHPSADAANGSNEDRGEVADEDKR KLVPGLFKNEMKRRRDFYAAHPSADAANGS GSNEDRGEVADEDKRIITDDEIISLSIEFF R D F K R I 6 2 2 5 0 0 3 2 1 0 0 1 0 1 1 2 0 0 1 1 0 0 28 2 3006.2976 R4GMX3;Q5T8Z4;P35226 R4GMX3 239 266 COMMD3-BMI1;BMI1 Polycomb complex protein BMI-1 yes no 4 2.8283E-08 54.658 1 0.69246 0.85405 NaN 1 Median 0.69246 0.85405 NaN 1 0 Median NaN NaN NaN 0 0 Median 7586100 2482000 5104100 7586100 2482000 5104100 0 0 0 1543 1835 1586 5718 8662;8663 8662 2 DFYFSVK KEQIGKVDEIFGQLRDFYFSVKLSENMKAS DEIFGQLRDFYFSVKLSENMKASSFKKLQK R D F V K L 0 0 0 1 0 0 0 0 0 0 0 1 0 2 0 1 0 0 1 1 0 0 7 0 904.43307 A0A024RDJ3;Q9NY12 A0A024RDJ3 122 128 NOLA1;GAR1 H/ACA ribonucleoprotein complex subunit 1 yes no 1;2 0.025902 100.19 5 1 0.8588 0.89797 7.0521 4 Linear 0.81739 1.0213 7.7317 3 0 Plateau 0.57646 0.87997 NaN 1 0 Median 160770000 93382000 67384000 140470000 80568000 59900000 20298000 12814000 7484000 1544 317 1587 5719;5720;5721;5722;5723;5724 8664;8665;8666;8667;8668;8669;8670 8668 7 DFYVAFQDLPTR LKTFVKDRKEIPLAKDFYVAFQDLPTRHKI LAKDFYVAFQDLPTRHKIRELTSSRIGLLT K D F T R H 1 1 0 2 0 1 0 0 0 0 1 0 0 2 1 0 1 0 1 1 0 0 12 0 1470.7143 Q4ZG57;Q14566 Q4ZG57 73 84 MCM6 DNA replication licensing factor MCM6 yes no 2 1.3646E-05 116.77 3 0.39792 0.53885 9.901 3 Median 0.39792 0.53885 9.901 3 0 Median NaN NaN NaN 0 0 Median 15848000 10283000 5564800 15848000 10283000 5564800 0 0 0 1545 1488 1588 5725;5726;5727 8671;8672;8673;8674 8674 4 DGAAYFYGPIFIHPEETEHEPTK LVRPRVGRIEKVWVRDGAAYFYGPIFIHPE PIFIHPEETEHEPTKMFYKKEVFLSNLEET R D G T K M 2 0 0 1 0 0 4 2 2 2 0 1 0 2 3 0 2 0 2 0 0 0 23 0 2647.2231 Q86U86;E7EVG2 Q86U86 1186 1208 PBRM1 Protein polybromo-1 yes no 3 1.8693E-05 84.66 2 0.50588 0.63941 NaN 1 Median 0.50588 0.63941 NaN 1 0 Median NaN NaN NaN 0 0 Median 9252400 6785000 2467400 9252400 6785000 2467400 0 0 0 1546 1620 1589 5728;5729 8675;8676 8675 2 DGAGFLINLIDSPGHVDFSSEVTAALR YELSENDLNFIKQSKDGAGFLINLIDSPGH PGHVDFSSEVTAALRVTDGALVVVDCVSGV K D G L R V 3 1 1 3 0 0 1 3 1 2 3 0 0 2 1 3 1 0 0 2 0 0 27 0 2800.4032 P13639;B4DPU3;Q6PK56;B4DRE8;B4DMC6 P13639 94 120 EEF2 Elongation factor 2 yes no 3 0.0018406 57.694 1 0.65274 0.88842 NaN 1 Median 0.65274 0.88842 NaN 1 0 Median NaN NaN NaN 0 0 Median 27639000 17521000 10119000 27639000 17521000 10119000 0 0 0 1547 1264 1590 5730 8677 8677 0 DGALTQLNVAFSR DEDYLYREELAQFHRDGALTQLNVAFSREQ HRDGALTQLNVAFSREQSHKVYVQHLLKQD R D G S R E 2 1 1 1 0 1 0 1 0 0 2 0 0 1 0 1 1 0 0 1 0 0 13 0 1390.7205 B2R6E5;A8K3B4;Q59ED7;H0Y4R2;P16435;Q63HL4;B4DJI8;B4E305;B4DKM8;E7EMD0;B4DDH3 B2R6E5 588 600 POR;DKFZp686G04235 NADPH--cytochrome P450 reductase yes no 2 0.00011931 117.25 4 0.43655 0.60448 32.533 3 Median 0.43655 0.60448 32.533 3 0 Median NaN NaN NaN 0 0 Median 22144000 13882000 8262300 22144000 13882000 8262300 0 0 0 1548 592 1591 5731;5732;5733;5734 8678;8679;8680;8681;8682 8680 4 DGEDQTQDTELVETRPAGDGTFQK ALGFYPAEITLTWQRDGEDQTQDTELVETR ELVETRPAGDGTFQKWAAVVVPSGEEQRYT R D G Q K W 1 1 0 4 0 3 3 3 0 0 1 1 0 1 1 0 4 0 0 1 0 0 24 1 2636.1838 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Z0;V5NQY7;V5NQY2;V5NQX7;V5NQX2;V5NQX0;V5NQW5;V5NQV6;V5NQU7;V5NQU3;V5NQT2;V5NQR3;V5NQQ5;V5NQG2;V5NQE9;V5NQE5;V5NQE0;V5NQD6;V5NQD2;V5NQC9;V5NQ93;F6IQR8;F6IQR7;F6IQR6;F6IQR5;F6IQR3;F6IQR1;F6IQR0;F6IQQ9;F6IQQ8;F6IQQ7;F6IQQ6;F6IQP4;F6IQN9;F6IQN8;F6IQN7;F6IQN6;F6IQN5;F6IQN4;F6IQN3;F6IQN2;F6IQN1;F6IQN0;F6IQM9;F6IQM8;F6IQM7;F6IQM6;F6IQM5;F6IQM4;F6IQM3;F6IQM2;F6IQM1;F6IQL8;F6IQL7;F6IQL6;F6IQL5;F6IQL4;F6IQL3;F6IQL2;F6IQL1;F6IQL0;F6IQK9;F6IQK8;F6IQK7;F6IQK6;F6IQK5;F6IQK4;F6IQK3;F6IQK2;F6IQK1;F6IQK0;F6IQJ9;F6IQJ8;F6IQJ7;F6IQJ5;F6IQJ4;F6IQJ3;F6IQJ2;F6IQJ1;F6IQJ0;F6IQI9;F6IQI8;F6IQI7;F6IQI6;F6IQI5;F6IQI4;F6IQI3;F6IQI2;F6IQI1;F6IQI0;F6IQH9;F6IQH8;F6IQH7;F6IQH6;F6IQH5;F6IQH4;F6IQH3;F6IQH2;F6IQH1;F6IQH0;F6IQG9;F6IQG8;F6IQG7;F6IQB0;F6IQA9;F6IQA7;A0A140G0A5;D3VN25;B9WPN5;A0A0U5QLU5;V6DZ76;X5JRV1;W1I435;Q95HC2;Q95HA5;Q5C9P9;K7WT83;I4EPA6;I2GAE0;G9MCL5;G1FTT7;F6IQL9;E3WHS6;D9UB08;D7GN81;D7GN80;D0AB34;B5BLP2;B3WFP3;B2G4X0;B0JF23;B0BKZ5;A8YQF2;A7WPJ2;A6YS07;A6Q0R5;A6Q0R4;A6Q0R3;A6H581;A6H578;A0A1G4P1H9;A0A1D3TZM5;A0A1C3PHF2;A0A160YIT6;A0A125RL88;A0A0U5QLQ5;A0A0U5Q1V3;A0A0U5Q1R3;A0A0U5Q035;A0A0U5KJ66;A0A0S4XRI6;A0A0S4XRI5;A0A0S4XR60;A0A0S4XQV7;A0A0M7BFM3;A0A0D6K9L4;A0A0C7U0X1;A0A0B7NY95;A0A0B7NX62;A0A090MF30;A0A090KME2;A0A090KFT5;A0A090KEX7;V5NQV1;S6B6S2;Q860B0;Q85ZX8;Q7YQB2;Q7YQB1;Q6R742;Q6R739;Q6IVK0;Q64EU5;Q5RIP0;Q5QT33;Q546I7;Q53X46;Q52QV3;Q52QV2;Q3KT81;Q29987;Q27W00;Q0PHP6;Q001S2;O19617;M4QNN1;K7DWB0;K0P2X1;I3ZN89;I2G9F8;H8XVX3;H2B3H3;G9FZ34;F1CZ00;E3UPC4;D9UB04;D9UAZ9;D6CJC1;D3XQC3;D3K0R2;D3K0R1;D2EBJ4;C5IYE6;C4PKH3;C1K0Y5;C1K0Y1;C1K0Y0;C1K0X8;C1K0X7;C1K0X5;C1K0X4;C1K0X3;C0LNY0;B8YJM6;B6ZBY4;B2ZSE2;B1PWE4;A7UM82;A4Q9R6;A0A1D8MAL8;A0A1D3KYN4;A0A1D3KYM9;A0A1D0C403;A0A1C3PIA1;A0A1C3PI75;A0A1C3PI74;A0A1C3PI47;A0A1C3PI20;A0A1C3PI06;A0A1C3PHZ3;A0A1C3PHZ0;A0A1C3PHY4;A0A1C3PHY2;A0A1C3PHX9;A0A1C3PHX2;A0A1C3PHX0;A0A1C3PHW9;A0A1C3PHW5;A0A1C3PHW3;A0A1C3PHU4;A0A1C3PHU3;A0A1C3PHT8;A0A1C3PHT2;A0A1C3PHS8;A0A1C3PHS6;A0A1C3PHS4;A0A1C3PHR5;A0A1C3PHQ8;A0A1C3PHQ2;A0A1C3PHP4;A0A1C3PHN2;A0A1C3PHN1;A0A1B1FC03;A0A191XZC3;A0A173AD97;A0A173AD87;A0A173AD55;A0A173AD40;A0A173AD10;A0A142J2B0;A0A140DJD0;A0A125R6G5;A0A0U5QLT5;A0A0U5Q1X6;A0A0U5Q0Z5;A0A0U5Q0W6;A0A0U5Q0E7;A0A0U5Q0D3;A0A0U5Q0D1;A0A0U5PZB5;A0A0U5PZ41;A0A0U5PXQ9;A0A0U5PU85;A0A0U5KKC2;A0A0U5KJ72;A0A0U5IHU5;A0A0U5IHT2;A0A0S4T4X7;A0A0S4T4W1;A0A0S4T4S3;A0A0S4T4R3;A0A0S4T4P6;A0A0S4T4N4;A0A0S4T4M2;A0A0S4T4M1;A0A0S4T4K2;A0A0S4T4H1;A0A0S4T4F5;A0A0S4T4D4;A0A0S4T4A3;A0A0S4T489;A0A0S4T485;A0A0S4T476;A0A0S4T452;A0A0S4T432;A0A0S4T402;A0A0S4T400;A0A0S4T3Y6;A0A0S4T3W5;A0A0S4T3V2;A0A0S4T3U7;A0A0S4T3Q4;A0A0S4T3P9;A0A0S4T3N9;A0A0S4T3N7;A0A0S4T3I8;A0A0S4T3I7;A0A0S4T3I6;A0A0S4T3H1;A0A0S4T3G2;A0A0S4T3F5;A0A0S4T3C3;A0A0S4T3A1;A0A0S4T351;A0A0S4T322;A0A0S4T2Z1;A0A0S4T2U5;A0A0S4T2P1;A0A0S4T2L8;A0A0S4T2G2;A0A0S4T2C9;A0A0S4T2B8;A0A0S4T2A5;A0A0S4T295;A0A0S4T289;A0A0S4T273;A0A0S4T261;A0A0S4T219;A0A0S4T203;A0A0S4T1S9;A0A0S4T1S1;A0A0S4T1N7;A0A0S4T1L5;A0A0S4T1L3;A0A0S4T1K5;A0A0S4T1K1;A0A0S4T1J0;A0A0S4T1I6;A0A0S4T1I4;A0A0S4T1H9;A0A0S4T1H4;A0A0S4T1H1;A0A0S4T1G7;A0A0S4T1F0;A0A0S4T1E3;A0A0S4T1D1;A0A0S4T1B9;A0A0S4T197;A0A0S4T183;A0A0K8K5V0;A0A0B7NY93;A0A0B7NY91;A0A0B7NY86;A0A0B7NY81;A0A0B7NY70;A0A0B7NXX4;A0A0B7NXV1;A0A0B7NXU1;A0A0B7NXT1;A0A0B7NXS4;A0A0B7NX46;A0A0B7NX39;A0A0B7NX31;A0A0B7NS21;A0A0B7NS05;A0A0B7NRZ4;A0A0B7NRY9;A0A0B7NRY4;A0A0B7NRX1;A0A0B7NNN9;A0A0B7NNL2;A0A0B7NNK4;A0A0B7NNJ6;A0A0B7NNI9;A0A0B6VWU6;A0A0A8R5V5;A0A0A1IX96;A0A090MF27;A0A090MEZ8;A0A090MEY3;A0A090MEW2;A0A090KMD4;A0A090KM82;A0A090KM77;A0A090KKK1;A0A090KKF6;A0A090KKD3;A0A090KFY5;A0A090KFV0;A0A090KF65;A0A090KF14;A0A090KF09;A0A090KEZ4;A0A076FQ79;A0A060VHI5;A0A060VHI0;A0A060VHD5;A0A060VG30;A0A060VD27;A0A060VD21;A0A060VD03;A0A060VD00;A0A060VCY4;A0A060VCX7;A0A060VCV3;A0A140T962;A0A140T921;A0A0G2JIF0;Q6R743;B7U5E0;A2AEA2;A0A140T9J9;A0A140T9H5;A0A0G2JH50;Q2UVJ3;A2BF26;A0A140T9U8;A0A140T9B3;B4DVY0;P01893;Q31612;Q09160;Q9TNN7;Q29963;Q07000;P30505;P30501;P10321 A0A0F7W082 152 175 HLA-A;HLA-C;HLA;HLA-B;HLA-Cw;HLA-A*31;HLA A;MHC class I HLA-A;HLA-A*0226;HLA-A*33;HLA-A24AK;HLA-A*02;HLA-DQB1;HLA-A*0201V3;Cw;HLA-H HLA class I histocompatibility antigen, A-29 alpha chain;HLA class I histocompatibility antigen, A-74 alpha chain;HLA class I histocompatibility antigen, A-66 alpha chain;HLA class I histocompatibility antigen, A-43 alpha chain;HLA class I histocompatibility antigen, A-36 alpha chain;HLA class I histocompatibility antigen, A-34 alpha chain;HLA class I histocompatibility antigen, A-26 alpha chain;HLA class I histocompatibility antigen, A-23 alpha chain;HLA class I histocompatibility antigen, A-1 alpha chain;HLA class I histocompatibility antigen, A-25 alpha chain;HLA class I histocompatibility antigen, A-33 alpha chain;HLA class I histocompatibility antigen, A-31 alpha chain;HLA class I histocompatibility antigen, A-30 alpha chain;HLA class I histocompatibility antigen, A-11 alpha chain;HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-32 alpha chain;HLA class I histocompatibility antigen, A-24 alpha chain;HLA class I histocompatibility antigen, A-3 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain;HLA class I histocompatibility antigen, Cw-16 alpha chain;HLA class I histocompatibility antigen, Cw-12 alpha chain;HLA class I histocompatibility antigen, Cw-17 alpha chain;Beta-2-microglobulin;Putative HLA class I histocompatibility antigen, alpha chain H;HLA class I histocompatibility antigen, B-73 alpha chain;HLA class I histocompatibility antigen, A-80 alpha chain;HLA class I histocompatibility antigen, Cw-5 alpha chain;HLA class I histocompatibility antigen, Cw-6 alpha chain;HLA class I histocompatibility antigen, Cw-15 alpha chain;HLA class I histocompatibility antigen, Cw-8 alpha chain;HLA class I histocompatibility antigen, Cw-2 alpha chain;HLA class I histocompatibility antigen, Cw-7 alpha chain yes no 3 4.5566E-09 60.278 2 0.81347 1.0429 0.78016 2 Median 0.81347 1.0429 0.78016 2 0 Median NaN NaN NaN 0 0 Median 20191000 8568000 11623000 20191000 8568000 11623000 0 0 0 1549 325 1592 5735;5736 8683;8684;8685;8686 8683 4 DGELHIAEHPAGHLVLK AIASLAATGLHPGGKDGELHIAEHPAGHLV ELHIAEHPAGHLVLKWLIEQDKKMKENGRE K D G L K W 2 0 0 1 0 0 2 2 3 1 3 1 0 0 1 0 0 0 0 1 0 0 17 0 1834.969 Q15397;B2RDG4 Q15397 543 559 KIAA0020 Pumilio domain-containing protein KIAA0020 yes no 4 0.031417 20.048 1 0.76581 0.96845 NaN 1 Median 0.76581 0.96845 NaN 1 0 Median NaN NaN NaN 0 0 Median 11876000 7716700 4159800 11876000 7716700 4159800 0 0 0 1550 1511 1593 5737 8687;8688 8688 2 DGEQHEDLNEVAK WNIFNRMPIARKIIKDGEQHEDLNEVAKLF IKDGEQHEDLNEVAKLFNIHED________ K D G A K L 1 0 1 2 0 1 3 1 1 0 1 1 0 0 0 0 0 0 0 1 0 0 13 0 1482.6587 O95831;A0A140VK04;E9PMA0 O95831 594 606 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 2;3 1.3529E-34 199.8 5 2 0.80324 1.0981 47.718 4 Median 0.54663 0.68944 20.363 2 0 Median 1.0399 1.5356 1.9456 2 0 Median 54338000 37834000 16505000 39024000 29878000 9145800 15314000 7955500 7358900 1551 1224 1594 5738;5739;5740;5741;5742;5743;5744 8689;8690;8691;8692;8693;8694;8695;8696;8697;8698 8690 10 DGEVDATASSIPELER EEESIAAVPGRRGRRDGEVDATASSIPELE GEVDATASSIPELERQIEKLSKRQLFFRKK R D G E R Q 2 1 0 2 0 0 3 1 0 1 1 0 0 0 1 2 1 0 0 1 0 0 16 0 1687.7901 J3QK86;J3KPG5;F8VU39;Q9UIF9;A0A0C4DGI9 J3QK86 1041 1056 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 1.8099E-33 184.34 4 2 0.83374 1.1709 20.325 6 Median 0.79013 1.083 20.854 4 0 Median 0.88963 1.3028 1.9473 2 0 Median 56646000 29868000 26778000 29812000 16045000 13766000 26834000 13823000 13012000 1552 1062 1595 5745;5746;5747;5748;5749;5750 8699;8700;8701;8702;8703;8704;8705;8706;8707;8708;8709;8710;8711 8703 13 DGEVYCIDAR DVREEDSYLFDLDNKDGEVYCIDARFYGNV DLDNKDGEVYCIDARFYGNVSRFINHHCEP K D G A R F 1 1 0 2 1 0 1 1 0 1 0 0 0 0 0 0 0 0 1 1 0 0 10 0 1196.5132 A0A1B0GV09;Q9H9B1;Q71M33;Q59FM7;A0A0G2JIS2;A0A024RCN9;B7Z852;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7;A0A0G2JRR0;A0A0G2JRN8 A0A1B0GV09 1150 1159 EHMT1;FP13812;EHMT2 Histone-lysine N-methyltransferase EHMT1;Histone-lysine N-methyltransferase EHMT2 no no 2 0.034353 70.1 1 0.44534 0.62827 NaN 1 Median 0.44534 0.62827 NaN 1 0 Median NaN NaN NaN 0 0 Median 1845300 1284800 560530 1845300 1284800 560530 0 0 0 1553 518;298 1596 5751 8712 8712 1 DGGILPR VTNSGKTHTIQGTIKDGGILPRSLALIFNS HTIQGTIKDGGILPRSLALIFNSLQGQLHP K D G P R S 0 1 0 1 0 0 0 2 0 1 1 0 0 0 1 0 0 0 0 0 0 0 7 0 726.40244 O95235;D6RBN1 O95235 176 182 KIF20A Kinesin-like protein KIF20A;Kinesin-like protein yes no 2 0.011936 118.06 2 2 0.60587 0.85872 28.929 2 Median 0.76671 1.0536 NaN 1 0 Median 0.47877 0.69986 NaN 1 0 Median 23138000 17071000 6067400 10416000 7226900 3188800 12723000 9844100 2878600 1554 1215 1597 5752;5753;5754;5755 8713;8714;8715;8716 8713 4 DGHADAAQDTEQFVATVLQAASR FPRRAVMQVFTEWLRDGHADAAQDTEQFVA DTEQFVATVLQAASRDLDWEVRAQGLELAL R D G S R D 6 1 0 3 0 3 1 1 1 0 1 0 0 1 0 1 2 0 0 2 0 0 23 0 2400.1306 Q6PJG6 Q6PJG6 622 644 BRAT1 BRCA1-associated ATM activator 1 yes yes 3 0.04908 33.665 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1555 1596 1598 5756 8717 8717 1 DGHFNPEVVK FRFGNPLHIAQKLFRDGHFNPEVVKYRQLC QKLFRDGHFNPEVVKYRQLCFKSQYKRYLN R D G V K Y 0 0 1 1 0 0 1 1 1 0 0 1 0 1 1 0 0 0 0 2 0 0 10 0 1140.5564 A0A024R3K9;A0A024R3N2;Q6P4R8;E9PQ59;B4DSL1;E9PJU3;E9PJG2 A0A024R3K9 113 122 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2 0.016422 79.489 1 0.99507 1.2575 NaN 1 Median 0.99507 1.2575 NaN 1 0 Median NaN NaN NaN 0 0 Median 2781600 1248500 1533000 2781600 1248500 1533000 0 0 0 1556 101 1599 5757 8718 8718 1 DGIDDESYGQIFKPIISK GAGKGKYYAVNFPMRDGIDDESYGQIFKPI DDESYGQIFKPIISKVMEMYQPSAVVLQCG R D G S K V 0 0 0 3 0 1 1 2 0 4 0 2 0 1 1 2 0 0 1 0 0 0 18 1 2024.0102 Q92769;B3KUJ5 Q92769 231 248 HDAC2 Histone deacetylase 2;Histone deacetylase yes no 3 0.0001751 69.289 2 2 0.86677 1.2187 40.075 4 Median 0.68721 0.84273 25.035 2 0 Median 0.9968 1.5952 10.946 2 0 Median 66836000 34559000 32277000 25929000 16253000 9675400 40907000 18306000 22602000 1557 1675 1600 5758;5759;5760;5761 8719;8720;8721;8722;8723 8723 5 DGIQLSEYLPEVK SKDSIFVKILQKLLKDGIQLSEYLPEVKDL LKDGIQLSEYLPEVKDLLQADQLGSLKSNP K D G V K D 0 0 0 1 0 1 2 1 0 1 2 1 0 0 1 1 0 0 1 1 0 0 13 0 1489.7664 Q8WUM0;B4E206;A0A024R3R6;B4E3T7 Q8WUM0 1111 1123 NUP133 Nuclear pore complex protein Nup133 yes no 2 0.00036515 105.25 2 0.33223 0.42275 10.702 2 Median 0.33223 0.42275 10.702 2 0 Median NaN NaN NaN 0 0 Median 12864000 10067000 2797500 12864000 10067000 2797500 0 0 0 1558 1666 1601 5762;5763 8724;8725;8726 8724 3 DGLAALAYHAGLSDSARDEVQQK LSRRECDTMADTLQRDGLAALAYHAGLSDS HAGLSDSARDEVQQKWINQDGCQVICATIA R D G Q K W 5 1 0 3 0 2 1 2 1 0 3 1 0 0 0 2 0 0 1 1 0 0 23 1 2414.1826 H0YNU5;B2RAN0;P54132;B7ZKN7;B7Z8C1 H0YNU5 911 933 BLM Bloom syndrome protein yes no 3 3.9802E-09 102.07 4 2 0.65422 0.85701 21.781 6 Median 0.63332 0.82171 4.4325 4 0 Median 0.81204 1.2401 13.932 2 0 Median 47886000 28433000 19453000 31210000 19817000 11392000 16676000 8615400 8060500 1559 725 1602 5764;5765;5766;5767;5768;5769 8727;8728;8729;8730;8731;8732;8733;8734;8735;8736 8729 10 DGLAFNALIHR PYKNVNVQNFHISWKDGLAFNALIHRHRPE ISWKDGLAFNALIHRHRPELIEYDKLRKDD K D G H R H 2 1 1 1 0 0 0 1 1 1 2 0 0 1 0 0 0 0 0 0 0 0 11 0 1225.6568 A0A0S2Z3G9;O43707;B4E337;B4DSX0 A0A0S2Z3G9 194 204 ACTN4 Alpha-actinin-4 no no 2 0.00099431 113.22 1 0.82088 1.1446 NaN 1 Median 0.82088 1.1446 NaN 1 0 Median NaN NaN NaN 0 0 Median 4334100 2501800 1832300 4334100 2501800 1832300 0 0 0 1560 451 1603 5770 8737;8738 8738 2 DGLEVAVLPHNIR NIGQLVDVKVLEKTKDGLEVAVLPHNIRAF TKDGLEVAVLPHNIRAFLPTSHLSDHVANG K D G I R A 1 1 1 1 0 0 1 1 1 1 2 0 0 0 1 0 0 0 0 2 0 0 13 0 1431.7834 Q14690;B4DH82;B4DES7 Q14690 649 661 PDCD11 Protein RRP5 homolog yes no 2 8.4548E-09 110.54 4 2 0.969 1.2973 8.3124 4 Median 0.969 1.2973 8.3124 4 0 Median NaN NaN NaN 0 0 Median 123140000 83923000 39214000 81797000 42584000 39214000 41339000 41339000 0 1561 1494 1604 5771;5772;5773;5774;5775;5776 8739;8740;8741;8742;8743;8744;8745;8746 8743 8 DGLGGLPDIVR DVKIVILPDYLEIARDGLGGLPDIVRDRVT EIARDGLGGLPDIVRDRVTSAVEALLSADS R D G V R D 0 1 0 2 0 0 0 3 0 1 2 0 0 0 1 0 0 0 0 1 0 0 11 0 1110.6033 A0A140VJZ1;P45974 A0A140VJZ1 134 144 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 0.0060271 86.882 3 0.39224 0.52898 16.386 3 Median 0.39224 0.52898 16.386 3 0 Median NaN NaN NaN 0 0 Median 16399000 11555000 4844500 16399000 11555000 4844500 0 0 0 1562 505 1605 5777;5778;5779 8747;8748;8749 8747 3 DGLIVETLTVGCK MHPKETTRQLSLAVKDGLIVETLTVGCKGS VKDGLIVETLTVGCKGSKAGIEQEGYWLPG K D G C K G 0 0 0 1 1 0 1 2 0 1 2 1 0 0 0 0 2 0 0 2 0 0 13 0 1403.733 Q5BJG6;B7Z3W2;J3QKD2;Q15326;Q6PJR5;A0A0A0MRY2;B0QZE2;B7Z2J6;E7ENI9;Q5UGI2;E9PE09;E7EV75 Q5BJG6 22 34 ZMYND11 Zinc finger MYND domain-containing protein 11 yes no 2 3.486E-06 124.1 4 0.97882 1.4463 10.159 3 Plateau 0.97882 1.4463 10.159 3 0 Plateau NaN NaN NaN 0 0 Median 28095000 16045000 12049000 28095000 16045000 12049000 0 0 0 1563 906 1606 5780;5781;5782;5783 8750;8751;8752;8753;8754;8755;8756 8754 7 DGLLENQTPEFFQDVCKPK LGPVGGVFNLAVVLRDGLLENQTPEFFQDV ENQTPEFFQDVCKPKYSGTLNLDRVTREAC R D G P K Y 0 0 1 2 1 2 2 1 0 0 2 2 0 2 2 0 1 0 0 1 0 0 19 1 2264.0783 A0A0U1RQF0;P49327 A0A0U1RQF0 1975 1993 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 1.486E-15 130.64 4 0.79407 0.98446 14.518 4 Linear 0.79407 0.98446 14.518 4 0 Linear NaN NaN NaN 0 0 Median 38248000 22372000 15876000 38248000 22372000 15876000 0 0 0 1564 486 1607 5784;5785;5786;5787 8757;8758;8759;8760;8761;8762;8763 8757 7 DGLLPENTFIVGYAR LAKKKIYPTIWWLFRDGLLPENTFIVGYAR DGLLPENTFIVGYARSRLTVADIRKQSEPF R D G A R S 1 1 1 1 0 0 1 2 0 1 2 0 0 1 1 0 1 0 1 1 0 0 15 0 1663.857 E9PD92;E7EM57;E7EUI8;Q2VF42;Q2Q9H2;B4DYA7;A8K8D9;P11413 E9PD92 58 72 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 2 0.0015155 106.67 3 0.5094 0.67354 NaN 1 Median 0.5094 0.67354 NaN 1 0 Median NaN NaN NaN 0 0 Median 7893100 5299600 2593500 7893100 5299600 2593500 0 0 0 1565 640 1608 5788;5789;5790 8764;8765;8766;8767 8767 4 DGLSCLIVLLQR SQIIKTLTKIPSLIKDGLSCLIVLLQRQKP LIKDGLSCLIVLLQRQKPESLGKKPFPHLC K D G Q R Q 0 1 0 1 1 1 0 1 0 1 4 0 0 0 0 1 0 0 0 1 0 0 12 0 1385.7701 B2RWN5;Q9H583;Q5T3Q7 B2RWN5 299 310 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.0072707 111.06 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7832200 0 7832200 7832200 0 7832200 0 0 0 1566 748 1609 5791 8768 8768 1 DGNASGTTLLEALDCILPPTRPTDK SANMPWFKGWKVTRKDGNASGTTLLEALDC EALDCILPPTRPTDKPLRLPLQDVYKIGGI K D G D K P 2 1 1 3 1 0 1 2 0 1 4 1 0 0 3 1 4 0 0 0 0 0 25 1 2654.3221 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;P68104;A8K9C4;Q5VTE0;Q96RE1;A0A087WVQ9;Q53GE9;Q53GA1;Q53G85;B4DV42;Q8IUB0;Q504Z0;Q53HR1;B4DNE0;A0A087WV01;Q9H2I7;Q53G89;Q6P4C9;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q16577 Q6IPT9 220 244 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1 Elongation factor 1-alpha;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 3 1.0404E-28 126.62 3 0.40382 0.53205 0.029381 2 Median 0.40382 0.53205 0.029381 2 0 Median NaN NaN NaN 0 0 Median 1530700000 1089000000 441660000 1530700000 1089000000 441660000 0 0 0 1567 1421 1610 5792;5793;5794 8769;8770;8771;8772;8773;8774 8773 6 DGNASGTTLLEALDCILPPTRPTDKPLR SANMPWFKGWKVTRKDGNASGTTLLEALDC DCILPPTRPTDKPLRLPLQDVYKIGGIGTV K D G L R L 2 2 1 3 1 0 1 2 0 1 5 1 0 0 4 1 4 0 0 0 0 0 28 2 3020.5601 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;P68104;A8K9C4;Q5VTE0;Q96RE1;A0A087WVQ9;Q53GE9;Q53GA1;Q53G85;B4DV42;Q8IUB0;Q504Z0;Q53HR1;B4DNE0;A0A087WV01;Q9H2I7;Q53G89;Q6P4C9;Q96C29;Q8TBL1;Q6P082;Q96CD8 Q6IPT9 220 247 EEF1A1;EEF1A1P5;EEF1A1L14 Elongation factor 1-alpha;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 3 0.011697 45.099 2 0.3547 0.41768 23.422 2 Median 0.3547 0.41768 23.422 2 0 Median NaN NaN NaN 0 0 Median 6539700 4041400 2498300 6539700 4041400 2498300 0 0 0 1568 1421 1611 5795;5796 8775;8776;8777 8775 2 DGNGYISAAELR DSEEEIREAFRVFDKDGNGYISAAELRHVM FDKDGNGYISAAELRHVMTNLGEKLTDESL K D G L R H 2 1 1 1 0 0 1 2 0 1 1 0 0 0 0 1 0 0 1 0 0 0 12 0 1264.6048 Q9BRL5;P0DP25;P0DP24;P0DP23;B4DJ51;B2RDW0;H0Y7A7;E7ETZ0;E7EMB3;G3V361;Q96HY3 Q9BRL5 96 107 CALM3;CALM2;CALM1 yes no 2 2.5705E-05 100.69 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10694000 10694000 0 10694000 10694000 0 0 0 0 1569 741 1612 5797;5798;5799;5800 8778;8779;8780;8781 8781 4 DGNLHEGDIILK QIFVKEMTRTGLATKDGNLHEGDIILKING ATKDGNLHEGDIILKINGTVTENMSLTDAR K D G L K I 0 0 1 2 0 0 1 2 1 2 2 1 0 0 0 0 0 0 0 0 0 0 12 0 1322.683 B7Z954;A0A024R233;A0A1B0GTW1;Q9UDY2;B7Z2R3;A0A024R225 B7Z954 318 329 TJP2 Tight junction protein ZO-2 yes no 2 0.040835 80.737 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1570 78 1613 5801 8782 8782 1 DGNPDNETYLHR EQVSVVINFDLPVDKDGNPDNETYLHRIGR VDKDGNPDNETYLHRIGRTGRFGKRGLAVN K D G H R I 0 1 2 2 0 0 1 1 1 0 1 0 0 0 1 0 1 0 1 0 0 0 12 0 1429.6222 I3L0H8;Q9HBZ9;F6QDS0;Q9NUU7;Q2NL95;Q7Z4W5;A0A0U4B4U6;H3BQK0;Q9UMR2;Q53G16;Q68DY7;Q69YM2;I3L352;Q59FQ9;B4DL69;A0A024QZ90 I3L0H8 383 394 DDX19A;DDX19B;DKFZp686C21137;DKFZp762C1313;hCG_1998531 ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 2 1.4754E-21 153.97 3 2 4.483 5.8831 161.51 3 Median 0.26887 0.36941 NaN 1 0 Median 4.6814 6.0563 4.1049 2 0 Median 19103000 8407500 10696000 10000000 6725500 3274700 9103200 1681900 7421300 1571 1058 1614 5802;5803;5804;5805;5806 8783;8784;8785;8786;8787;8788 8785 6 DGPCIYNNLEFGIDLDTR PPVIMVQNVSFKYTKDGPCIYNNLEFGIDL CIYNNLEFGIDLDTRVALVGPNGAGKSTLL K D G T R V 0 1 2 3 1 0 1 2 0 2 2 0 0 1 1 0 1 0 1 0 0 0 18 0 2110.963 A0A090N7X1;A0A090N7Y2;Q9UG63 A0A090N7X1 408 425 ABCF2 ATP-binding cassette sub-family F member 2 yes no 2 1.8561E-17 155.66 3 0.42695 0.59627 NaN 1 Median 0.42695 0.59627 NaN 1 0 Median NaN NaN NaN 0 0 Median 4855600 4249200 606440 4855600 4249200 606440 0 0 0 1572 380 1615 5807;5808;5809 8789;8790;8791;8792 8790 4 DGPPHQVLVVPLHSR KKEAVLAEKRQLGGKDGPPHQVLVVPLHSR DGPPHQVLVVPLHSRISLPEAMQLLQDRDT K D G S R I 0 1 0 1 0 1 0 1 2 0 2 0 0 0 3 1 0 0 0 3 0 0 15 0 1649.9002 Q2NL82;I3L1Q5 Q2NL82 79 93 TSR1 Pre-rRNA-processing protein TSR1 homolog yes no 3 4.739E-05 69.069 4 2 0.69313 0.94077 6.7498 6 Median 0.68546 0.92909 3.2215 4 0 Median 0.73404 1.039 1.7847 2 0 Median 79243000 44481000 34761000 61345000 34426000 26919000 17897000 10055000 7842300 1573 1529 1616 5810;5811;5812;5813;5814;5815 8793;8794;8795;8796;8797;8798;8799;8800;8801;8802 8796 10 DGQAMLWDLNEGK VTVSPDGSLCASGGKDGQAMLWDLNEGKHL GKDGQAMLWDLNEGKHLYTLDGGDIINALC K D G G K H 1 0 1 2 0 1 1 2 0 0 2 1 1 0 0 0 0 1 0 0 0 0 13 0 1475.6715 E9KL35;P63244;D6R9Z1;D6R9L0;D6RFX4;J3KPE3;H0Y8W2;H0YAF8;H0YAM7;D6RAC2;D6REE5;H0Y8R5 E9KL35 213 225 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 0.0079845 52.132 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1663000 0 1663000 0 0 0 1663000 0 1663000 1574 1019 1617 5816 8803 8803 367 1 DGQILPVPNVVVR ELVPRRVAIFIEKTKDGQILPVPNVVVRDV TKDGQILPVPNVVVRDVACGANHTLVLDSQ K D G V R D 0 1 1 1 0 1 0 1 0 1 1 0 0 0 2 0 0 0 0 4 0 0 13 0 1404.8089 A5PLK7;A0A024RAC5;Q9P258 A5PLK7 256 268 RCC2 Protein RCC2 yes no 2 0.00015478 75.294 2 2 0.58622 0.77652 17.198 4 Median 0.51555 0.71313 12.063 2 0 Median 0.6847 0.87866 17.496 2 0 Median 18476000 11251000 7225700 10206000 6539900 3666500 8269900 4710700 3559200 1575 239 1618 5817;5818;5819;5820 8804;8805;8806;8807;8808;8809 8804 6 DGQVINETSQHHDDLE THSKRTLLIKTVETRDGQVINETSQHHDDL GQVINETSQHHDDLE_______________ R D G L E - 0 0 1 3 0 2 2 1 2 1 1 0 0 0 0 1 1 0 0 1 0 0 16 0 1835.7922 V9HWE1;P08670;Q53HU8 V9HWE1 451 466 HEL113;VIM Vimentin yes no 2;3 1.3177E-68 219.92 7 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 945420000 0 0 872340000 0 0 73082000 0 0 1576 1245 1619 5821;5822;5823;5824;5825;5826;5827;5828;5829;5830 8810;8811;8812;8813;8814;8815;8816;8817;8818;8819 8816 10 DGQYILATGTYKPR DFEMPTVCTTIKVSKDGQYILATGTYKPRV KDGQYILATGTYKPRVRCYDTYQLSLKFER K D G P R V 1 1 0 1 0 1 0 2 0 1 1 1 0 0 1 0 2 0 2 0 0 0 14 1 1581.8151 Q9BSC4;B4DS83 Q9BSC4 63 76 NOL10 Nucleolar protein 10 yes no 2 9.3564E-14 160.72 4 2 0.80279 1.0906 7.8257 6 Median 0.84923 1.1129 9.677 4 0 Median 0.64642 1.0906 0.023087 2 0 Median 112920000 60695000 52229000 63192000 30966000 32226000 49732000 29729000 20002000 1577 1710 1620 5831;5832;5833;5834;5835;5836 8820;8821;8822;8823;8824;8825;8826;8827;8828;8829;8830;8831;8832 8823 13 DGSCGVAYVVQEPGDYEVSVK VEGPSKAEISFEDRKDGSCGVAYVVQEPGD AYVVQEPGDYEVSVKFNEEHIPDSPFVVPV K D G V K F 1 0 0 2 1 1 2 3 0 0 0 1 0 0 1 2 0 0 2 5 0 0 21 0 2257.0209 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5;Q2VP91;H0Y5C6 P21333 2290 2310 FLNA;FLJ00119 Filamin-A yes no 2 1.7431E-25 180.85 4 0.92501 1.1652 7.6385 4 Median 0.92501 1.1652 7.6385 4 0 Median NaN NaN NaN 0 0 Median 64870000 31967000 32903000 64870000 31967000 32903000 0 0 0 1578 1287 1621 5837;5838;5839;5840 8833;8834;8835;8836;8837;8838;8839;8840 8833 8 DGSCSAEYIPFAPGDYDVNITYGGAHIPGSPFR VEGPSESKINCRDNKDGSCSAEYIPFAPGD NITYGGAHIPGSPFRVPVKDVVDPSKVKIA K D G F R V 3 1 1 3 1 0 1 5 1 3 0 0 0 2 4 3 1 0 3 1 0 0 33 0 3529.5885 O75369;A0A024R321;Q68CT4;E7EN95 O75369 1380 1412 FLNB;DKFZp686A1668 Filamin-B yes no 3 3.8788E-05 49.944 3 0.68597 0.91854 5.375 3 Plateau 0.68597 0.91854 5.375 3 0 Plateau NaN NaN NaN 0 0 Median 13786000 8338800 5447300 13786000 8338800 5447300 0 0 0 1579 1199 1622 5841;5842;5843 8841;8842;8843;8844;8845 8841 5 DGSCSVEYIPYEAGTYSLNVTYGGHQVPGSPFK VEGPSEAKMSCMDNKDGSCSVEYIPYEAGT NVTYGGHQVPGSPFKVPVHDVTDASKVKCS K D G F K V 1 0 1 1 1 1 2 5 1 1 1 1 0 1 3 4 2 0 4 3 0 0 33 0 3578.63 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1407 1439 FLNA;FLJ00119 Filamin-A yes no 3 6.4563E-28 121.38 4 0.55292 0.69707 9.9815 4 Median 0.55292 0.69707 9.9815 4 0 Median NaN NaN NaN 0 0 Median 86226000 53479000 32747000 86226000 53479000 32747000 0 0 0 1580 1287 1623 5844;5845;5846;5847 8846;8847;8848;8849;8850;8851;8852 8846 7 DGSLEDDEDEEDDLDEGVGGK DSSMVENEVIKSLGKDGSLEDDEDEEDDLD DEDEEDDLDEGVGGKRRSMEVKPAQASHTN K D G G K R 0 0 0 7 0 0 5 4 0 0 2 1 0 0 0 1 0 0 0 1 0 0 21 0 2236.8615 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 1609 1629 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 5.7323E-85 246.86 4 1 1.0567 1.5687 40.074 3 Plateau 0.64167 0.82566 21.577 2 0 Median 1.0567 1.5687 NaN 1 0 Median 17939000 11307000 6632100 10516000 7936500 2579300 7423600 3370800 4052800 1581 1457 1624 5848;5849;5850;5851;5852 8853;8854;8855;8856;8857;8858;8859 8856 7 DGSLIVSSSYDGLCR LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR DGSLIVSSSYDGLCRIWDTASGQCLKTLID R D G C R I 0 1 0 2 1 0 0 2 0 1 2 0 0 0 0 4 0 0 1 1 0 0 15 0 1627.7512 P61964 P61964 182 196 WDR5 WD repeat-containing protein 5 yes yes 2 1.3111E-27 172.17 5 1 0.83728 1.1008 22.784 3 Median 0.83728 1.1008 22.784 3 0 Median NaN NaN NaN 0 0 Median 26223000 15793000 10430000 23746000 13317000 10430000 2476300 2476300 0 1582 1394 1625 5853;5854;5855;5856;5857;5858 8860;8861;8862;8863;8864;8865;8866;8867;8868 8862 9 DGSSNHVYNYQPCDHPR HRLWAAHCRKIQLKKDGSSNHVYNYQPCDH SSNHVYNYQPCDHPRQPCDSSCPCVIAQNF K D G P R Q 0 1 2 2 1 1 0 1 2 0 0 0 0 0 2 2 0 0 2 1 0 0 17 0 2044.8446 A0A090N8E9;Q15910;S4S3R8;Q75MP9;Q75MQ0 A0A090N8E9 516 532 EZH2 Histone-lysine N-methyltransferase EZH2 yes no 3 6.2409E-26 172.32 4 0.78787 1.0648 16.958 4 Median 0.78787 1.0648 16.958 4 0 Median NaN NaN NaN 0 0 Median 50266000 26919000 23347000 50266000 26919000 23347000 0 0 0 1583 381 1626 5859;5860;5861;5862 8869;8870;8871;8872;8873;8874;8875;8876 8869 8 DGTGVVEFVR HMREAGDVCYADVYRDGTGVVEFVRKEDMT ADVYRDGTGVVEFVRKEDMTYAVRKLDNTK R D G V R K 0 1 0 1 0 0 1 2 0 0 0 0 0 1 0 0 1 0 0 3 0 0 10 0 1077.5455 J3KTL2;Q07955;Q59FA2;J3KSR8;B7Z570 J3KTL2 155 164 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 0.00051281 99.815 4 1 0.51325 0.69574 29.604 4 Median 0.50336 0.67871 6.0458 3 0 Median 0.77619 1.2082 NaN 1 0 Median 165940000 115180000 50760000 144330000 103030000 41300000 21604000 12144000 9460300 1584 1139 1627 5863;5864;5865;5866;5867 8877;8878;8879;8880;8881;8882;8883;8884 8884 8 DGTGVVEFVRK HMREAGDVCYADVYRDGTGVVEFVRKEDMT DVYRDGTGVVEFVRKEDMTYAVRKLDNTKF R D G R K E 0 1 0 1 0 0 1 2 0 0 0 1 0 1 0 0 1 0 0 3 0 0 11 1 1205.6404 J3KTL2;Q07955;Q59FA2;J3KSR8;B7Z570 J3KTL2 155 165 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 1.2874E-11 137.95 1 0.47628 0.6284 NaN 1 Median 0.47628 0.6284 NaN 1 0 Median NaN NaN NaN 0 0 Median 16011000 11109000 4902000 16011000 11109000 4902000 0 0 0 1585 1139 1628 5868 8885;8886 8885 2 DGTIDFTPGSELLITK NINQGSITFAGGPGRDGTIDFTPGSELLIT GTIDFTPGSELLITKAKNGHLAVVAPRLNS R D G T K A 0 0 0 2 0 0 1 2 0 2 2 1 0 1 1 1 3 0 0 0 0 0 16 0 1705.8774 F5H6E2;B7Z3E5;O00159;D3DTH7 F5H6E2 1008 1023 MYO1C Unconventional myosin-Ic yes no 2 2.8748E-42 195.77 2 0.76628 0.9521 16.471 2 Median 0.76628 0.9521 16.471 2 0 Median NaN NaN NaN 0 0 Median 47976000 28168000 19809000 47976000 28168000 19809000 0 0 0 1586 905 1629 5869;5870 8887;8888 8887 2 DGTSPEEEIEIER VKQIGINKKSVKSAKDGTSPEEEIEIERQK AKDGTSPEEEIEIERQKAEMALLMMDEDED K D G E R Q 0 1 0 1 0 0 5 1 0 2 0 0 0 0 1 1 1 0 0 0 0 0 13 0 1502.6736 Q9H501 Q9H501 691 703 ESF1 ESF1 homolog yes yes 2 0.00096599 60.255 2 0.95097 1.3078 NaN 1 Median 0.95097 1.3078 NaN 1 0 Median NaN NaN NaN 0 0 Median 12592000 2441300 10151000 12592000 2441300 10151000 0 0 0 1587 1734 1630 5871;5872 8889;8890;8891;8892;8893 8890 5 DGTYAVTYIPDK DQEGKPKRAIVHDNKDGTYAVTYIPDKTGR DNKDGTYAVTYIPDKTGRYMIGVTYGGDDI K D G D K T 1 0 0 2 0 0 0 1 0 1 0 1 0 0 1 0 2 0 2 1 0 0 12 0 1341.6452 O75369;A0A024R321;Q68CT4;E7EN95 O75369 1573 1584 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.0021446 56.404 1 0.73517 0.95013 NaN 1 Median 0.73517 0.95013 NaN 1 0 Median NaN NaN NaN 0 0 Median 5892300 3740200 2152100 5892300 3740200 2152100 0 0 0 1588 1199 1631 5873 8894;8895 8894 2 DGVFLYFEDNAGVIVNNK HPAVVIRQRKSYRRKDGVFLYFEDNAGVIV FLYFEDNAGVIVNNKGEMKGSAITGPVAKE K D G N K G 1 0 3 2 0 0 1 2 0 1 1 1 0 2 0 0 0 0 1 3 0 0 18 0 2012.9844 Q9BTQ7;A0A024R1Q8;P62829;J3KT29;J3KTJ3 Q9BTQ7 86 103 RPL23 60S ribosomal protein L23 yes no 2 4.0386E-97 255.24 13 0.96156 1.2246 14.486 4 Median 0.96156 1.2246 14.486 4 0 Median NaN NaN NaN 0 0 Median 188440000 58649000 129790000 188440000 58649000 129790000 0 0 0 1589 63 1632 5874;5875;5876;5877;5878;5879;5880;5881;5882;5883;5884;5885;5886 8896;8897;8898;8899;8900;8901;8902;8903;8904;8905;8906;8907;8908;8909;8910;8911;8912;8913;8914;8915;8916;8917 8906 22 DGVFLYFEDNAGVIVNNKGEMK HPAVVIRQRKSYRRKDGVFLYFEDNAGVIV EDNAGVIVNNKGEMKGSAITGPVAKECADL K D G M K G 1 0 3 2 0 0 2 3 0 1 1 2 1 2 0 0 0 0 1 3 0 0 22 1 2458.1839 Q9BTQ7;A0A024R1Q8;P62829;J3KT29;J3KTJ3 Q9BTQ7 86 107 RPL23 60S ribosomal protein L23 yes no 3 0.0016825 53.359 1 1.1578 1.4451 NaN 1 Median 1.1578 1.4451 NaN 1 0 Median NaN NaN NaN 0 0 Median 3053900 1575100 1478800 3053900 1575100 1478800 0 0 0 1590 63 1633 5887 8918;8919 8919 39 2 DGVLAYAR VQGFFKKAGATFRLKDGVLAYARLSHLSDS GATFRLKDGVLAYARLSHLSDSKNVFNPEA K D G A R L 2 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 8 0 863.45012 Q14690;B4DH82;B4DES7 Q14690 388 395 PDCD11 Protein RRP5 homolog yes no 2 0.0112 71.141 1 0.89097 1.1961 NaN 1 Median 0.89097 1.1961 NaN 1 0 Median NaN NaN NaN 0 0 Median 14372000 6458100 7913800 14372000 6458100 7913800 0 0 0 1591 1494 1634 5888 8920 8920 1 DGVPGLNIEELIEK HSFPTSIKCLTPHLKDGVPGLNIEELIEKL KDGVPGLNIEELIEKLQSGMVVKDQICDVR K D G E K L 0 0 1 1 0 0 3 2 0 2 2 1 0 0 1 0 0 0 0 1 0 0 14 0 1524.8035 A0A087X211;Q8TCG1 A0A087X211 591 604 KIAA1524 Protein CIP2A yes no 2 0.00051637 61.435 2 0.44953 0.57995 3.2311 2 Median 0.44953 0.57995 3.2311 2 0 Median NaN NaN NaN 0 0 Median 5328400 2925200 2403200 5328400 2925200 2403200 0 0 0 1592 375 1635 5889;5890 8921;8922 8922 2 DGVVEITGK DVNHFAPDELTVKTKDGVVEITGKHEERQD LTVKTKDGVVEITGKHEERQDEHGYISRCF K D G G K H 0 0 0 1 0 0 1 2 0 1 0 1 0 0 0 0 1 0 0 2 0 0 9 0 916.48656 V9HW43;P04792;B4DL87 V9HW43 115 123 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 1;2 0.001269 117.81 4 1 0.34054 0.43285 3.0815 3 Median 0.34054 0.43285 3.0815 3 0 Median NaN NaN NaN 0 0 Median 147250000 104810000 42441000 140080000 104810000 35264000 7176400 0 7176400 1593 1232 1636 5891;5892;5893;5894;5895 8923;8924;8925;8926;8927 8926 5 DGYDYDGYR EFEDPRDAEDAVYGRDGYDYDGYRLRVEFP DAVYGRDGYDYDGYRLRVEFPRSGRGTGRG R D G Y R L 0 1 0 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 3 0 0 0 9 0 1122.4254 J3KTL2;Q07955;Q59FA2;A8K1L8 J3KTL2 75 83 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 0.004571 85.161 3 1 0.53005 0.71909 23.431 4 Median 0.52538 0.72153 1.9622 3 0 Plateau 0.79051 1.135 NaN 1 0 Median 118480000 75072000 43406000 107530000 69086000 38444000 10947000 5985400 4961500 1594 1139 1637 5896;5897;5898;5899 8928;8929;8930;8931;8932;8933 8930 6 DHALLEEQSK INSKWEKVQQLVPKRDHALLEEQSKQQSNE LVPKRDHALLEEQSKQQSNEHLRRQFASQA R D H S K Q 1 0 0 1 0 1 2 0 1 0 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1168.5724 A0A0S2Z3G9;O43707;Q96BG6;F5GXS2;H7C144 A0A0S2Z3G9 634 643 ACTN4 Alpha-actinin-4 yes no 2 0.018025 47.082 1 0.58231 0.931 NaN 1 Median NaN NaN NaN 0 0 Median 0.58231 0.931 NaN 1 0 Median 563790000 354040000 209750000 0 0 0 563790000 354040000 209750000 1595 451 1638 5900 8934 8934 1 DHASIQMNVAEVDK VPRKCSASNRIIGAKDHASIQMNVAEVDKV KDHASIQMNVAEVDKVTGRFNGQFKTYAIC K D H D K V 2 0 1 2 0 1 1 0 1 1 0 1 1 0 0 1 0 0 0 2 0 0 14 0 1555.7301 Q8WVC2;Q6FGH5;Q9BYK1;P63220 Q8WVC2 28 41 RPS21 40S ribosomal protein S21 yes no 2;3 2.4369E-27 186.13 10 2 1.0904 1.4104 24.41 6 Median 1.0339 1.3206 7.4764 4 0 Median 1.3829 2.0916 3.6913 2 0 Median 63029000 28394000 34635000 22480000 10971000 11509000 40549000 17423000 23126000 1596 1419 1639;1640 5901;5902;5903;5904;5905;5906;5907;5908;5909;5910;5911;5912 8935;8936;8937;8938;8939;8940;8941;8942;8943;8944;8945;8946;8947;8948;8949;8950;8951;8952 8937 621 18 DHAVVVGVYRPPPK NMKPQEQLTLEPYERDHAVVVGVYRPPPKV RDHAVVVGVYRPPPKVKN____________ R D H P K V 1 1 0 1 0 0 0 1 1 0 0 1 0 0 3 0 0 0 1 4 0 0 14 1 1532.8463 Q96BS4;P22087 Q96BS4 244 257 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2;3 3.1652E-55 155.08 8 4 0.61767 0.84519 17.536 11 Median 0.64194 0.85065 13.401 7 0 Median 0.44868 0.7253 18.24 4 0 Median 944090000 586210000 357870000 682380000 409410000 272970000 261700000 176800000 84901000 1597 1288 1641 5913;5914;5915;5916;5917;5918;5919;5920;5921;5922;5923;5924 8953;8954;8955;8956;8957;8958;8959;8960;8961;8962;8963;8964;8965;8966;8967;8968;8969;8970;8971;8972;8973;8974;8975;8976;8977;8978;8979 8968 27 DHFYSDDDAIEADSEGDAEPCDK ATDTSDSEGSCGSEKDHFYSDDDAIEADSE AIEADSEGDAEPCDKENENDGESSVGTNMG K D H D K E 3 0 0 7 1 0 3 1 1 1 0 1 0 1 1 2 0 0 1 0 0 0 23 0 2599.9769 Q9Y3B9;A0JLN3 Q9Y3B9 54 76 RRP15 RRP15-like protein yes no 3 2.7323E-09 118.46 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12522000 0 12522000 12522000 0 12522000 0 0 0 1598 1816 1642 5925;5926;5927 8980;8981;8982;8983 8981 4 DHGGALGPEEFK EQMQEFRASFNHFDKDHGGALGPEEFKACL FDKDHGGALGPEEFKACLISLGYDVENDRQ K D H F K A 1 0 0 1 0 0 2 3 1 0 1 1 0 1 1 0 0 0 0 0 0 0 12 0 1255.5833 A0A0S2Z3G9;O43707;Q96BG6;F5GXS2;A0A0S2Z3X3 A0A0S2Z3G9 780 791 ACTN4 Alpha-actinin-4 yes no 2 9.3451E-16 137.89 3 0.80934 1.0235 6.6056 2 Median 0.80934 1.0235 6.6056 2 0 Median NaN NaN NaN 0 0 Median 27530000 19278000 8251800 27530000 19278000 8251800 0 0 0 1599 451 1643 5928;5929;5930 8984;8985;8986;8987 8986 4 DHIVLTVLPDQDQSDEAQEK GKLPRLDSVVRLQFKDHIVLTVLPDQDQSD TVLPDQDQSDEAQEKMVYIYHSLKNSRETH K D H E K M 1 0 0 4 0 3 2 0 1 1 2 1 0 0 1 1 1 0 0 2 0 0 20 0 2279.0917 Q8IUF8 Q8IUF8 370 389 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA yes yes 3 0.00022327 72.644 3 1 0.65247 0.88674 10.384 4 Median 0.70891 0.9388 12.394 3 0 Median 0.56757 0.83758 NaN 1 0 Median 21547000 12660000 8886300 14547000 9069500 5477700 6999300 3590700 3408600 1600 1623 1644 5931;5932;5933;5934 8988;8989;8990;8991 8988 4 DHLGDNRTELPLTLYLCAGTQAESAQSNR RAQTGAPCLSFDIVRDHLGDNRTELPLTLY YLCAGTQAESAQSNRLMMLRMHNLHGTKPP R D H N R L 3 2 2 2 1 2 2 2 1 0 5 0 0 0 1 2 3 0 1 0 0 0 29 1 3229.5422 Q8TCJ8;Q8NCK5;B2RDP6;Q9BQ67 Q8TCJ8 74 102 DKFZp564C172;GRWD1 Glutamate-rich WD repeat-containing protein 1 yes no 4 6.1295E-08 58.945 3 0.46437 0.64206 30.005 3 Median 0.46437 0.64206 30.005 3 0 Median NaN NaN NaN 0 0 Median 45098000 27999000 17099000 45098000 27999000 17099000 0 0 0 1601 739 1645 5935;5936;5937 8992;8993;8994;8995 8994 3 DHPLPEVAHVK VKSEDFSLPAYMDRRDHPLPEVAHVKHLSA MDRRDHPLPEVAHVKHLSASQKALKEKEKA R D H V K H 1 0 0 1 0 0 1 0 2 0 1 1 0 0 2 0 0 0 0 2 0 0 11 0 1240.6564 P13073;H3BPG0;Q86WV2;H3BN72;H3BNV9 P13073 43 53 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes no 2;3 4.9526E-08 149.94 3 1 0.79094 0.98959 31.441 3 Median 0.67084 0.85126 21.294 2 0 Median 0.93892 1.373 NaN 1 0 Median 99193000 59729000 39465000 92298000 56133000 36164000 6895600 3595500 3300200 1602 1263 1646 5938;5939;5940;5941 8996;8997;8998;8999;9000 8996 5 DHQTITIQEMPEK ENNPLETEYGLSVYKDHQTITIQEMPEKAP YKDHQTITIQEMPEKAPAGQLPRSVDVILD K D H E K A 0 0 0 1 0 2 2 0 1 2 0 1 1 0 1 0 2 0 0 0 0 0 13 0 1568.7505 Q8NHX6;Q53HJ4;B2R7C5;A0A0S2Z4T1;A0A0S2Z492;P25205;B4DUQ9;J3KQ69;B4DS46 Q8NHX6 195 207 HCC5;MCM3 DNA helicase;DNA replication licensing factor MCM3 yes no 2 0.0066371 40.015 1 2.2333 2.9441 NaN 1 Median NaN NaN NaN 0 0 Median 2.2333 2.9441 NaN 1 0 Median 2053400 630310 1423100 0 0 0 2053400 630310 1423100 1603 463 1647 5942 9001 9001 165 1 DHQYGLPIK VLLYDLRSDKPLLVKDHQYGLPIKSVHFQD KPLLVKDHQYGLPIKSVHFQDSLDLILSAD K D H I K S 0 0 0 1 0 1 0 1 1 1 1 1 0 0 1 0 0 0 1 0 0 0 9 0 1069.5556 Q9BSC4;B4DS83;H7C1Z3 Q9BSC4 268 276 NOL10 Nucleolar protein 10 yes no 2 1.6686E-08 163.15 4 0.8146 1.0047 14.295 4 Median 0.8146 1.0047 14.295 4 0 Median NaN NaN NaN 0 0 Median 130420000 68189000 62230000 130420000 68189000 62230000 0 0 0 1604 1710 1648 5943;5944;5945;5946 9002;9003;9004;9005;9006;9007 9007 6 DHQYQFLEDAVR CDTLTCRDCQLNAHKDHQYQFLEDAVRNQR AHKDHQYQFLEDAVRNQRKLLASLVKRLGD K D H V R N 1 1 0 2 0 2 1 0 1 0 1 0 0 1 0 0 0 0 1 1 0 0 12 0 1519.7056 B2R8R5;Q13263;M0R2I3;M0R3C0 B2R8R5 239 250 TRIM28 Transcription intermediary factor 1-beta yes no 2;3 2.1027E-21 150.61 5 2 0.32944 0.4388 100.75 7 Median 0.28626 0.38366 25.679 5 0 Median 1.8207 2.8299 0.91115 2 0 Median 167110000 108830000 58277000 119560000 91251000 28314000 47541000 17578000 29963000 1605 716 1649 5947;5948;5949;5950;5951;5952;5953 9008;9009;9010;9011;9012;9013;9014;9015;9016;9017;9018;9019;9020;9021 9017 14 DHRDNLEFFLAGIGR RGLKPSCTIIPLMKKDHRDNLEFFLAGIGR DHRDNLEFFLAGIGRLHLSGIDANPNALFP K D H G R L 1 2 1 2 0 0 1 2 1 1 2 0 0 2 0 0 0 0 0 0 0 0 15 1 1758.8802 A0A0U1RQF0;P49327 A0A0U1RQF0 788 802 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 0.047565 18.364 1 0.65624 0.86432 NaN 1 Median 0.65624 0.86432 NaN 1 0 Median NaN NaN NaN 0 0 Median 4376000 2304000 2072100 4376000 2304000 2072100 0 0 0 1606 486 1650 5954 9022 9022 1 DHRPPCAQEAPR DIFRIYIKEKKECRRDHRPPCAQEAPRNMV CRRDHRPPCAQEAPRNMVHPNVICDGCNGP R D H P R N 2 2 0 1 1 1 1 0 1 0 0 0 0 0 3 0 0 0 0 0 0 0 12 1 1432.663 Q13501;E7EMC7;E3WH17;E9PFW8;E3W990;B4DE82;C9JRJ8 Q13501 108 119 SQSTM1;SQSTM1-ALK Sequestosome-1;Tyrosine-protein kinase receptor yes no 3 0.0010556 106.79 1 0.55304 0.76956 NaN 1 Median 0.55304 0.76956 NaN 1 0 Median NaN NaN NaN 0 0 Median 2645300 1700300 945050 2645300 1700300 945050 0 0 0 1607 1471 1651 5955 9023;9024 9023 2 DHSFFIPDIEYLSDIK HHSSSLMKNVAHMTKDHSFFIPDIEYLSDI HSFFIPDIEYLSDIKGLIKYLGEKVGVGKI K D H I K G 0 0 0 3 0 0 1 0 1 3 1 1 0 2 1 2 0 0 1 0 0 0 16 0 1937.9411 Q969S3 Q969S3 274 289 ZNF622 Zinc finger protein 622 yes yes 3 1.8935E-10 127.07 2 0.66791 0.84551 10.852 2 Median 0.66791 0.84551 10.852 2 0 Median NaN NaN NaN 0 0 Median 10152000 5456100 4695800 10152000 5456100 4695800 0 0 0 1608 1679 1652 5956;5957 9025;9026;9027;9028 9025 4 DHTLVQTIAR LKFIDPFCKIAAKTKDHTLVQTIARGVFEA AAKTKDHTLVQTIARGVFEAIVDQSPFVPE K D H A R G 1 1 0 1 0 1 0 0 1 1 1 0 0 0 0 0 2 0 0 1 0 0 10 0 1152.6251 Q14684;Q6PJM8 Q14684 205 214 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 2 1.8237E-06 120.12 1 1 0.71014 0.99517 4.6574 2 Median 0.71728 0.96293 NaN 1 0 Median 0.70308 1.0285 NaN 1 0 Median 35035000 20531000 14505000 20827000 11952000 8874600 14209000 8578500 5630300 1609 1493 1653 5958;5959 9029;9030;9031 9031 3 DHTVSGDEDYCPR WVHDSIDYRFNHHCKDHTVSGDEDYCPRSK CKDHTVSGDEDYCPRSKKANLGKNASMNTQ K D H P R S 0 1 0 3 1 0 1 1 1 0 0 0 0 0 1 1 1 0 1 1 0 0 13 0 1549.6103 Q9UIG0 Q9UIG0 943 955 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2;3 1.3811E-104 265.67 7 3 8.1668 10.378 NaN 1 Median NaN NaN NaN 0 0 Median 8.1668 10.378 NaN 1 0 Median 112600000 256330 112340000 101510000 0 101510000 11092000 256330 10836000 1610 1786 1654 5960;5961;5962;5963;5964;5965;5966;5967;5968;5969 9032;9033;9034;9035;9036;9037;9038;9039;9040;9041;9042 9035 11 DHVVSDFSEHGSLK GLEGLLTTKWLLRGKDHVVSDFSEHGSLKY KDHVVSDFSEHGSLKYLHENLPIPQRNTN_ K D H L K Y 0 0 0 2 0 0 1 1 2 0 1 1 0 1 0 3 0 0 0 2 0 0 14 0 1555.7267 P54886 P54886 768 781 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 3 3.6227E-08 140.33 4 1.5293 1.9392 8.6804 3 Median 1.5293 1.9392 8.6804 3 0 Median NaN NaN NaN 0 0 Median 42521000 16066000 26455000 42521000 16066000 26455000 0 0 0 1611 1375 1655 5970;5971;5972;5973 9043;9044;9045;9046 9044 4 DHYPCVSSLEQLTELGR RRLQEKTSKLPDMLKDHYPCVSSLEQLTEL YPCVSSLEQLTELGRETDAFVCRPNAALCR K D H G R E 0 1 0 1 1 1 2 1 1 0 3 0 0 0 1 2 1 0 1 1 0 0 17 0 2002.9418 B2RMQ4;Q8WWK9 B2RMQ4 643 659 CKAP2 Cytoskeleton-associated protein 2 yes no 2;3 5.436E-16 110.37 5 1.2975 1.7283 11.607 3 Median 1.2975 1.7283 11.607 3 0 Median NaN NaN NaN 0 0 Median 66491000 29103000 37388000 66491000 29103000 37388000 0 0 0 1612 745 1656 5974;5975;5976;5977;5978 9047;9048;9049;9050;9051;9052;9053;9054;9055 9049 9 DIAAGEELLYDYGDR HDIDGVPHLILIASRDIAAGEELLYDYGDR DIAAGEELLYDYGDRSKASIEAHPWLKH__ R D I D R S 2 1 0 3 0 0 2 2 0 1 2 0 0 0 0 0 0 0 2 0 0 0 15 0 1698.7737 E3VVS3;A0A0C4DFR3;Q9NQR1 E3VVS3 295 309 SETD8 N-lysine methyltransferase SETD8 yes no 2 2.8127E-18 136.24 4 2 1.2897 1.7396 18.887 6 Median 1.1699 1.5631 12.427 4 0 Median 1.5553 2.2119 0.15407 2 0 Median 53760000 23580000 30180000 33614000 15551000 18063000 20145000 8028700 12117000 1613 419 1657 5979;5980;5981;5982;5983;5984 9056;9057;9058;9059;9060;9061;9062;9063;9064 9059 9 DIAAHIK VECATQALEKYNIEKDIAAHIKKEFDKKYN LEKYNIEKDIAAHIKKEFDKKYNPTWHCIV K D I I K K 2 0 0 1 0 0 0 0 1 2 0 1 0 0 0 0 0 0 0 0 0 0 7 0 766.43374 Q6FGH9;P63167;F8VXL2;F8VRV5 Q6FGH9 37 43 DNCL1;DYNLL1 Dynein light chain 1, cytoplasmic yes no 2 0.035388 57.811 1 0.61265 0.80062 NaN 1 Median 0.61265 0.80062 NaN 1 0 Median NaN NaN NaN 0 0 Median 140800000 87224000 53579000 140800000 87224000 53579000 0 0 0 1614 1418 1658 5985 9065 9065 1 DIAAHIKK VECATQALEKYNIEKDIAAHIKKEFDKKYN EKYNIEKDIAAHIKKEFDKKYNPTWHCIVG K D I K K E 2 0 0 1 0 0 0 0 1 2 0 2 0 0 0 0 0 0 0 0 0 0 8 1 894.5287 Q6FGH9;P63167;F8VXL2;F8VRV5 Q6FGH9 37 44 DNCL1;DYNLL1 Dynein light chain 1, cytoplasmic yes no 2 0.012413 87.754 3 0.70042 0.85746 0.62162 3 Plateau 0.70042 0.85746 0.62162 3 0 Plateau NaN NaN NaN 0 0 Median 115510000 67226000 48285000 115510000 67226000 48285000 0 0 0 1615 1418 1659 5986;5987;5988 9066;9067;9068 9068 3 DIALGVFDVVVTDPSCPASVLK GAASVKQHHSSAHNKDIALGVFDVVVTDPS DVVVTDPSCPASVLKCAEALQLPVVSQEWV K D I L K C 2 0 0 3 1 0 0 1 0 1 2 1 0 1 2 2 1 0 0 5 0 0 22 0 2301.1926 A6NNK5;Q12888;B3KVT9 A6NNK5 1866 1887 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 2 0.0068098 48.112 1 0.75282 0.95004 NaN 1 Median 0.75282 0.95004 NaN 1 0 Median NaN NaN NaN 0 0 Median 12161000 7002900 5158200 12161000 7002900 5158200 0 0 0 1616 572 1660 5989 9069 9069 1 DICACAATGTGK TPIQKACIPVGLLGKDICACAATGTGKTAA LGKDICACAATGTGKTAAFALPVLERLIYK K D I G K T 3 0 0 1 2 0 0 2 0 1 0 1 0 0 0 0 2 0 0 0 0 0 12 0 1223.5275 B7Z6D5;B3GQE6;Q96GQ7;A0A087X059 B7Z6D5 226 237 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 0.00058342 71.221 2 0.89689 1.1388 12.109 2 Median 0.89689 1.1388 12.109 2 0 Median NaN NaN NaN 0 0 Median 19721000 10429000 9291800 19721000 10429000 9291800 0 0 0 1617 750 1661 5990;5991 9070;9071;9072 9072 3 DICNDVLSLLEK QMAREYREKIETELRDICNDVLSLLEKFLI ELRDICNDVLSLLEKFLIPNASQAESKVFY R D I E K F 0 0 1 2 1 0 1 0 0 1 3 1 0 0 0 1 0 0 0 1 0 0 12 0 1417.7123 D0PNI1;P63104;E7EX29;B0AZS6;E7ESK7 D0PNI1 92 103 YWHAZ 14-3-3 protein zeta/delta yes no 2 0.0027465 108.56 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1509000 1509000 0 1509000 1509000 0 0 0 0 1618 974 1662 5992;5993;5994 9073;9074;9075 9073 3 DIDDDLEGEVTEECGK QESTVMVLRNMVDPKDIDDDLEGEVTEECG IDDDLEGEVTEECGKFGAVNRVIIYQEKQG K D I G K F 0 0 0 4 1 0 4 2 0 1 1 1 0 0 0 0 1 0 0 1 0 0 16 0 1822.7415 A0A0J9YYL3;A0A0J9YXJ8;A0A0J9YVP6;A0A0J9YXX5;Q9UHX1 A0A0J9YYL3 420 435 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 2 0.00012489 110.15 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 613250 613250 0 613250 613250 0 0 0 0 1619 442 1663 5995;5996 9076;9077 9077 2 DIDEVSSLLR EILPNLVCCSAKNLRDIDEVSSLLRTSIMS AKNLRDIDEVSSLLRTSIMSKQYGNEVFLA R D I L R T 0 1 0 2 0 0 1 0 0 1 2 0 0 0 0 2 0 0 0 1 0 0 10 0 1145.5928 Q7Z759;Q53HU0;P50990;H7C4C8 Q7Z759 105 114 CCT8 T-complex protein 1 subunit theta yes no 2 0.007276 85.862 4 0.19542 0.27492 NaN 1 Median 0.19542 0.27492 NaN 1 0 Median NaN NaN NaN 0 0 Median 3138100 2015500 1122600 3138100 2015500 1122600 0 0 0 1620 1359 1664 5997;5998;5999;6000 9078;9079;9080;9081 9080 4 DIDIHEVR MKVTEKIPVRHLYTKDIDIHEVRIGWSLTT VRHLYTKDIDIHEVRIGWSLTTSGMLLGEE K D I V R I 0 1 0 2 0 0 1 0 1 2 0 0 0 0 0 0 0 0 0 1 0 0 8 0 995.50361 Q96BA7;B3KX72;B4DLR3;Q00839;Q7Z4Q5 Q96BA7 250 257 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U no no 2;3 0.0018479 95.815 6 1 0.39414 0.54012 14.038 5 Median 0.39414 0.54012 14.038 5 0 Median NaN NaN NaN 0 0 Median 698540000 465060000 233490000 656250000 465060000 191190000 42294000 0 42294000 1621 788 1665 6001;6002;6003;6004;6005;6006;6007 9082;9083;9084;9085;9086;9087;9088;9089;9090 9090 9 DIDILNSAGK LSKMQREWYTRILMKDIDILNSAGKMDKMR RILMKDIDILNSAGKMDKMRLLNILMQLRK K D I G K M 1 0 1 2 0 0 0 1 0 2 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1044.5451 O60264;B7ZAX9;B4DZC0;Q4W5H1 O60264 431 440 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 0.00035177 98.033 3 2.0637 2.5772 6.1368 2 Median 2.0637 2.5772 6.1368 2 0 Median NaN NaN NaN 0 0 Median 46358000 11871000 34487000 46358000 11871000 34487000 0 0 0 1622 1189 1666 6008;6009;6010 9091;9092;9093;9094 9093 4 DIDISSPEFK VTAYTVDVTGREGAKDIDISSPEFKIKIPR REGAKDIDISSPEFKIKIPRHELTEISNVD K D I F K I 0 0 0 2 0 0 1 0 0 2 0 1 0 1 1 2 0 0 0 0 0 0 10 0 1149.5554 Q09666;B4DTV0 Q09666 172 181 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.00046458 88.948 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6169500 6169500 0 6169500 6169500 0 0 0 0 1623 1453 1667 6011 9095 9095 1 DIDNNLITSTPR KEERENPSKRSRIERDIDNNLITSTPRAGE IERDIDNNLITSTPRAGEKPNKQISRVRRK R D I P R A 0 1 2 2 0 0 0 0 0 2 1 0 0 0 1 1 2 0 0 0 0 0 12 0 1357.6838 A0A024R5Q8;Q05D32;H0YNU2;H0YNW9;H0YMH7 A0A024R5Q8 77 88 CTDSPL2 CTD small phosphatase-like protein 2 yes no 2 8.3189E-09 93.258 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1624 149 1668 6012 9096 9096 1 DIEAQIANNR VTEGEDGINWSISDKDIEAQIANNRTPGRW SISDKDIEAQIANNRTPGRWTQRYYSANKN K D I N R T 2 1 2 1 0 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 10 0 1142.568 Q05DN1;Q8N3Z6 Q05DN1 216 225 ZCCHC7 Zinc finger CCHC domain-containing protein 7 yes no 2 0.00055436 70.919 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1625 1444 1669 6013 9097 9097 1 DIEDVFYK CRIYVGNLPPDIRTKDIEDVFYKYGAIRDI PPDIRTKDIEDVFYKYGAIRDIDLKNRRGG K D I Y K Y 0 0 0 2 0 0 1 0 0 1 0 1 0 1 0 0 0 0 1 1 0 0 8 0 1027.4862 J3KTL2;Q07955;Q59FA2;A8K1L8;J3QQV5;J3KSW7 J3KTL2 31 38 SRSF1 Serine/arginine-rich splicing factor 1 yes no 1;2 0.0087144 116.73 6 2 0.54191 0.70432 28.631 5 Median 0.62742 0.7991 14.592 4 0 Linear 0.79461 1.2071 NaN 1 0 Median 204130000 137490000 66648000 193520000 132040000 61480000 10617000 5449200 5168100 1626 1139 1670 6014;6015;6016;6017;6018;6019;6020;6021 9098;9099;9100;9101;9102;9103;9104;9105;9106;9107;9108;9109;9110 9098 13 DIEGKLPQTEQELK IAASETLKERKAAIRDIEGKLPQTEQELKE RDIEGKLPQTEQELKEKEKELQKLTQEETN R D I L K E 0 0 0 1 0 2 3 1 0 1 2 2 0 0 1 0 1 0 0 0 0 0 14 1 1626.8465 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 543 556 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 4.2007E-32 188.15 8 4 0.70417 0.88176 7.2243 12 Median 0.71204 0.87504 5.0736 8 0 Median 0.60835 0.97612 1.6342 4 0 Median 300460000 179420000 121040000 206350000 121930000 84414000 94109000 57488000 36621000 1627 1760 1671 6022;6023;6024;6025;6026;6027;6028;6029;6030;6031;6032;6033 9111;9112;9113;9114;9115;9116;9117;9118;9119;9120;9121;9122;9123;9124;9125;9126 9114 16 DIELSDDPYDCIR RIPRVRVLEDEEGSKDIELSDDPYDCIRLS SKDIELSDDPYDCIRLSVENVPCIVTLCKI K D I I R L 0 1 0 4 1 0 1 0 0 2 1 0 0 0 1 1 0 0 1 0 0 0 13 0 1609.693 B2RDZ9;A0A024R2P7;Q15024 B2RDZ9 179 191 EXOSC7 Exosome complex component RRP42 yes no 2 1.0415E-05 133.89 6 0.622 0.86261 23.177 3 Median 0.622 0.86261 23.177 3 0 Median NaN NaN NaN 0 0 Median 13772000 8070000 5702300 13772000 8070000 5702300 0 0 0 1628 91 1672 6034;6035;6036;6037;6038;6039 9127;9128;9129;9130;9131;9132 9128 6 DIENQYETQITQIEHEVSSSGQEVQSSAK DMRQEYEQLIAKNRKDIENQYETQITQIEH HEVSSSGQEVQSSAKEVTQLRHGVQELEIE K D I A K E 1 0 1 1 0 5 5 1 1 3 0 1 0 0 0 5 2 0 1 2 0 0 29 0 3263.5066 CON__P35527;P35527;K7EQQ3 CON__P35527 340 368 KRT9 Keratin, type I cytoskeletal 9 yes no 3 1.7175E-28 148.89 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1647000000 1647000000 0 837060000 837060000 0 809890000 809890000 0 + 1629 963 1673 6040;6041;6042 9133;9134;9135 9133 3 DIEREDIEFICK LALHFLNKMKIMVIKDIEREDIEFICKTIG VIKDIEREDIEFICKTIGTKPVAHIDQFTA K D I C K T 0 1 0 2 1 0 3 0 0 3 0 1 0 1 0 0 0 0 0 0 0 0 12 1 1565.7396 B7Z9L0;B7Z2Z8;A8K3C3;P50991;B7Z2F4 B7Z9L0 271 282 CCT4 T-complex protein 1 subunit delta yes no 3 0.051371 28.976 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2418000 2418000 0 2418000 2418000 0 0 0 0 1630 593 1674 6043 9136 9136 1 DIFPYSENK IFFFGTHETAFLGPKDIFPYSENKEKYGKP AFLGPKDIFPYSENKEKYGKPNKRKGFNEG K D I N K E 0 0 1 1 0 0 1 0 0 1 0 1 0 1 1 1 0 0 1 0 0 0 9 0 1111.5186 O75475;Q05CM9 O75475 57 65 PSIP1 PC4 and SFRS1-interacting protein yes no 2 0.0016569 107.9 2 2 0.77301 1.0704 21.173 4 Median 1.0775 1.3363 23.72 2 0 Median 0.63337 1.0103 0.51353 2 0 Median 138820000 77658000 61165000 56574000 27796000 28778000 82249000 49862000 32387000 1631 1201 1675 6044;6045;6046;6047 9137;9138;9139;9140;9141;9142;9143 9139 7 DIGEGNLSTAAAAALAAAAVK EVVESEGERKTKVERDIGEGNLSTAAAAAL LSTAAAAALAAAAVKAKHLAAVEERKIKSL R D I V K A 9 0 1 1 0 0 1 2 0 1 2 1 0 0 0 1 1 0 0 1 0 0 21 0 1883.9953 Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;B4DF22 Q59G16 887 907 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 2 2.1835E-38 166.79 3 0.61575 0.77889 7.2786 3 Median 0.61575 0.77889 7.2786 3 0 Median NaN NaN NaN 0 0 Median 28319000 16655000 11663000 28319000 16655000 11663000 0 0 0 1632 257 1676 6048;6049;6050 9144;9145;9146;9147;9148 9144 5 DIGRLKETYEALLARFPNLR NKEESLLEKRRQLSRDIGRLKETYEALLAR KETYEALLARFPNLRFAYKDPEKNWNRNCV R D I L R F 2 3 1 1 0 0 2 1 0 1 4 1 0 1 1 0 1 0 1 0 0 0 20 3 2374.3121 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 488 507 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 4 4.4438E-05 51.348 2 2 0.59352 0.65881 32.706 4 Median 0.59352 0.65881 14.785 2 0 Median 0.65672 0.7288 53.746 2 0 Median 107340000 68485000 38853000 18288000 10343000 7945400 89049000 58142000 30908000 1633 50 1677 6051;6052;6053;6054 9149;9150;9151;9152;9153 9152 5 DIHEELPK LFQSSGLTNGIIEEKDIHEELPKRKERKQE NGIIEEKDIHEELPKRKERKQEEREDDKDS K D I P K R 0 0 0 1 0 0 2 0 1 1 1 1 0 0 1 0 0 0 0 0 0 0 8 0 979.49746 A0A024R2Z6;Q9BVP2 A0A024R2Z6 456 463 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.0074839 80.438 1 2 0.55414 0.8669 8.0457 3 Plateau 0.59476 0.76058 NaN 1 0 Median 0.5462 0.86571 4.2095 2 0 Median 78465000 51899000 26567000 8980700 6210500 2770200 69485000 45688000 23797000 1634 95 1678 6055;6056;6057 9154;9155;9156;9157;9158 9157 5 DIHELFVPENK ELLQEQNIVPYTIIKDIHELFVPENKLDHV TIIKDIHELFVPENKLDHVRAEAETLPSLS K D I N K L 0 0 1 1 0 0 2 0 1 1 1 1 0 1 1 0 0 0 0 1 0 0 11 0 1339.6772 Q5TB52;B4DWB5;O95340 Q5TB52 223 233 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes no 2 0.0049618 64.04 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1793400 0 1793400 0 0 0 1793400 0 1793400 1635 865 1679 6058 9159 9159 1 DIHTLAQLISAYSLVDPEK EAISDLQQLWKQNPKDIHTLAQLISAYSLV LAQLISAYSLVDPEKAKALSKHLPSSDSMS K D I E K A 2 0 0 2 0 1 1 0 1 2 3 1 0 0 1 2 1 0 1 1 0 0 19 0 2112.1103 V9HWK0;O76094;Q86X80;A0PJJ5;Q71V07;Q0D2M6;D6RDY6;O15302 V9HWK0 480 498 HEL103;SRP72 Signal recognition particle subunit SRP72 yes no 3 5.2385E-07 65.784 1 0.62742 0.79061 NaN 1 Median 0.62742 0.79061 NaN 1 0 Median NaN NaN NaN 0 0 Median 14933000 9030900 5901900 14933000 9030900 5901900 0 0 0 1636 1211 1680 6059 9160 9160 1 DIICQIAYAR YNTPKYRMIVRVTNRDIICQIAYARIEGDM RVTNRDIICQIAYARIEGDMIVCAAYAHEL R D I A R I 2 1 0 1 1 1 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 0 10 0 1221.6176 A2RUM7;P46777;B3KTM6;Q59GX9;Q9BUV4;Q5T7N0 A2RUM7 59 68 RPL5 60S ribosomal protein L5 yes no 2 1.5196E-05 127.68 4 1 0.72564 0.99434 18.63 5 Median 0.72753 1.0023 1.6908 4 0 Median 0.41787 0.6596 NaN 1 0 Median 529860000 288340000 241520000 503030000 269530000 233500000 26826000 18807000 8019500 1637 540 1681 6060;6061;6062;6063;6064 9161;9162;9163;9164;9165;9166;9167;9168;9169;9170;9171;9172;9173 9171 13 DIIDTPMDFATVR PFRQPVDLLEYPDYRDIIDTPMDFATVRET YRDIIDTPMDFATVRETLEAGNYESPMELC R D I V R E 1 1 0 3 0 0 0 0 0 2 0 0 1 1 1 0 2 0 0 1 0 0 13 0 1492.7232 Q8WWQ0;Q9NWP3 Q8WWQ0 1355 1367 PHIP PH-interacting protein yes no 2 0.00036077 63.944 4 0.77463 1.1793 11.137 4 Median NaN NaN NaN 0 0 Median 0.77463 1.1793 11.137 4 0 Median 64550000 35379000 29171000 0 0 0 64550000 35379000 29171000 1638 1668 1682 6065;6066;6067;6068 9174;9175;9176;9177;9178;9179 9179 741 6 DIIEHLNTSGAPADTSDPLQQICK ENIDAQLKRMAQDLKDIIEHLNTSGAPADT GAPADTSDPLQQICKILNAHMDSLQWIDQN K D I C K I 2 0 1 3 1 2 1 1 1 3 2 1 0 0 2 2 2 0 0 0 0 0 24 0 2622.2595 M0QXN5;A0A024QZF1;P37198 M0QXN5 377 400 NUP62;hCG_19665 Nuclear pore glycoprotein p62 yes no 3 7.6576E-07 77.675 3 0.36704 0.47524 30.652 3 Median 0.36704 0.47524 30.652 3 0 Median NaN NaN NaN 0 0 Median 12154000 9208000 2945600 12154000 9208000 2945600 0 0 0 1639 12 1683 6069;6070;6071 9180;9181;9182;9183;9184 9181 5 DIIGLAETGSGK TKIQIEAIPLALQGRDIIGLAETGSGKTGA QGRDIIGLAETGSGKTGAFALPILNALLET R D I G K T 1 0 0 1 0 0 1 3 0 2 1 1 0 0 0 1 1 0 0 0 0 0 12 0 1159.6085 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;A4UCU0;B4DYP6 Q53GJ1 56 67 hCG_27698;DDX47;E4-DBP Probable ATP-dependent RNA helicase DDX47 yes no 2 0.00015364 80.706 1 2 1.1776 1.4879 NaN 1 Median 1.1776 1.4879 NaN 1 0 Median NaN NaN NaN 0 0 Median 55640000 48027000 7612700 14274000 6661100 7612700 41366000 41366000 0 1640 249 1684 6072;6073;6074 9185;9186;9187;9188;9189 9186 5 DIIHDPGR VDFAERHGYIKGIVKDIIHDPGRGAPLAKV YIKGIVKDIIHDPGRGAPLAKVVFRDPYRF K D I G R G 0 1 0 2 0 0 0 1 1 2 0 0 0 0 1 0 0 0 0 0 0 0 8 0 921.46683 P62917;B4DVG7;E9PKZ0;E9PKU4;G3V1A1 P62917 47 54 RPL8 60S ribosomal protein L8 yes no 2 0.0078715 96.19 3 2 0.73017 1.0119 17.151 5 Median 0.73853 1.0228 3.5757 3 0 Median 0.46256 0.763 3.4262 2 0 Median 2386500000 1407900000 978630000 1993500000 1140900000 852650000 393030000 267060000 125970000 1641 1417 1685 6075;6076;6077;6078;6079 9190;9191;9192;9193;9194;9195;9196;9197 9193 8 DIIHYDPTK SNSTNRGSVAAKKFKDIIHYDPTKQDHATY AAKKFKDIIHYDPTKQDHATYERKRDDKPK K D I T K Q 0 0 0 2 0 0 0 0 1 2 0 1 0 0 1 0 1 0 1 0 0 0 9 0 1100.5502 F5H101;A0A024R250;Q76FK4;F8WE42;B4DM91;Q6AI50;A6H8Z4 F5H101 943 951 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 2 0.014206 76.221 1 2 0.6118 0.79265 NaN 1 Median 0.6118 0.79265 NaN 1 0 Median NaN NaN NaN 0 0 Median 10296000 2479100 7816700 5047900 2479100 2568800 5247900 0 5247900 1642 80 1686 6080;6081;6082 9198;9199;9200 9199 3 DIIIFVGTPVQK GKAMHTPKPSVGEEKDIIIFVGTPVQKLDL EEKDIIIFVGTPVQKLDLTENLTGSKRRPQ K D I Q K L 0 0 0 1 0 1 0 1 0 3 0 1 0 1 1 0 1 0 0 2 0 0 12 0 1328.7704 P46013 P46013 1308 1319 MKI67 Antigen KI-67 yes yes 2 2.0963E-22 160.75 5 3 0.9359 1.2339 43.176 7 Median 0.92585 1.2188 52.715 4 0 Median 1.0236 1.6398 18.451 3 0 Median 1160200000 582950000 577230000 869750000 442480000 427270000 290430000 140470000 149960000 1643 1342 1687 6083;6084;6085;6086;6087;6088;6089;6090 9201;9202;9203;9204;9205;9206;9207;9208;9209;9210;9211;9212 9204 10 DIILGMEISAPSQQR KNNVNVASLTQSEIRDIILGMEISAPSQQR DIILGMEISAPSQQRQQIAEIEKQTKEQSQ R D I Q R Q 1 1 0 1 0 2 1 1 0 3 1 0 1 0 1 2 0 0 0 0 0 0 15 0 1656.8505 Q6P2Q9;B4DK16;Q53GM6 Q6P2Q9 2009 2023 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.00054228 50.354 1 1.275 1.7858 NaN 1 Median NaN NaN NaN 0 0 Median 1.275 1.7858 NaN 1 0 Median 8428600 4249700 4178900 0 0 0 8428600 4249700 4178900 1644 1592 1688 6091 9213 9213 721 1 DIILQSNPLLEAFGNAK ISRVSGGGTKVQHVKDIILQSNPLLEAFGN ILQSNPLLEAFGNAKTVRNNNSSRFGKYFE K D I A K T 2 0 2 1 0 1 1 1 0 2 3 1 0 1 1 1 0 0 0 0 0 0 17 0 1841.9887 Q4KMR3;Q12965;Q6ZNI9;O00160;B0I1T1;Q4LE34;Q14779;B4DVP3;Q92827 Q4KMR3 144 160 MYO1E;FLJ00395;MYO1F;MYO1F variant protein Unconventional myosin-Ie;Unconventional myosin-If yes no 2 6.3446E-55 186.17 5 0.57136 0.7115 9.5497 5 Median 0.57136 0.7115 9.5497 5 0 Median NaN NaN NaN 0 0 Median 87048000 55164000 31884000 87048000 55164000 31884000 0 0 0 1645 1459 1689 6092;6093;6094;6095;6096 9214;9215;9216;9217;9218;9219;9220;9221 9218 8 DIILREDLEELQAR DPTQCFLLFANQTEKDIILREDLEELQARY KDIILREDLEELQARYPNRFKLWFTLDHPP K D I A R Y 1 2 0 2 0 1 3 0 0 2 3 0 0 0 0 0 0 0 0 0 0 0 14 1 1711.9105 H7C0R7;Q9UHQ9 H7C0R7 151 164 CYB5R1 NADH-cytochrome b5 reductase 1 yes no 3 0.0054447 40.941 1 0.49256 0.63889 NaN 1 Median 0.49256 0.63889 NaN 1 0 Median NaN NaN NaN 0 0 Median 7810400 5850200 1960200 7810400 5850200 1960200 0 0 0 1646 1122 1690 6097 9222 9222 0 DIINEEEVQFLK GDAFPELKKDPDMVKDIINEEEVQFLKTLS MVKDIINEEEVQFLKTLSRGRRILDRKIQS K D I L K T 0 0 1 1 0 1 3 0 0 2 1 1 0 1 0 0 0 0 0 1 0 0 12 0 1475.7508 P49588 P49588 373 384 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 0.00092968 109.66 2 0.67557 0.85782 NaN 1 Median 0.67557 0.85782 NaN 1 0 Median NaN NaN NaN 0 0 Median 8999000 7319900 1679100 8999000 7319900 1679100 0 0 0 1647 1352 1691 6098;6099 9223;9224;9225 9224 3 DIIPFIDK RTQDEHPKTMFSKDKDIIPFIDKYWECMTT TMFSKDKDIIPFIDKYWECMTTRQRPGKMT K D I D K Y 0 0 0 2 0 0 0 0 0 3 0 1 0 1 1 0 0 0 0 0 0 0 8 0 959.53278 A8K6T5;Q9UBL3;F5H8F7;B4DPT1 A8K6T5 196 203 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 2 0.031837 50.607 1 0.70585 0.93036 NaN 1 Median 0.70585 0.93036 NaN 1 0 Median NaN NaN NaN 0 0 Median 5394300 3065600 2328700 5394300 3065600 2328700 0 0 0 1648 627 1692 6100 9226 9226 1 DIISDTSGDFRK INRVYKEMYKTDLEKDIISDTSGDFRKLMV LEKDIISDTSGDFRKLMVALAK________ K D I R K L 0 1 0 3 0 0 0 1 0 2 0 1 0 1 0 2 1 0 0 0 0 0 12 1 1352.6572 H0YKS4;H0YMD0;H0YMU9;H0YN42;V9HW65;A0A024R5Z7;P07355;A6NMY6;H0YM50;H0YNP5;H0YN52;H0YNA0;H0YN28;H0YL33;B3KRQ1 H0YKS4 158 169 ANXA2;HEL-S-270;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 2 0.0034879 61.65 1 1 0.87574 1.3241 NaN 1 Median NaN NaN NaN 0 0 Median 0.87574 1.3241 NaN 1 0 Median 9027300 2638800 6388500 4394200 0 4394200 4633100 2638800 1994300 1649 153 1693 6101;6102 9227;9228 9227 1 DIISIAEDEDLR HLKKPGGFDISLFYRDIISIAEDEDLRVHF FYRDIISIAEDEDLRVHFEESSKLEDLLRK R D I L R V 1 1 0 3 0 0 2 0 0 3 1 0 0 0 0 1 0 0 0 0 0 0 12 0 1387.6831 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356 A0A024R1N4 219 230 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 1.759E-09 151.83 4 2 0.50552 0.67005 16.926 5 Median 0.47758 0.64176 2.9229 3 0 Median 0.56524 0.86888 10 2 0 Median 76732000 46718000 30014000 30675000 19457000 11218000 46057000 27262000 18795000 1650 62 1694 6103;6104;6105;6106;6107;6108 9229;9230;9231;9232;9233;9234;9235;9236 9233 8 DIISIAEDEDLRVHFEESSK HLKKPGGFDISLFYRDIISIAEDEDLRVHF AEDEDLRVHFEESSKLEDLLRKVRAKETRK R D I S K L 1 1 0 3 0 0 4 0 1 3 1 1 0 1 0 3 0 0 0 1 0 0 20 1 2331.123 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356 A0A024R1N4 219 238 XRCC6 X-ray repair cross-complementing protein 6 yes no 3 0.00040605 69.111 3 0.72939 0.93259 25.106 3 Plateau 0.72939 0.93259 25.106 3 0 Plateau NaN NaN NaN 0 0 Median 22010000 14463000 7547000 22010000 14463000 7547000 0 0 0 1651 62 1695 6109;6110;6111 9237;9238;9239;9240;9241 9239 5 DIIVEFIK FLCLTLKMLQIQPEKDIIVEFIKNEDFKYV LQIQPEKDIIVEFIKNEDFKYVRMLGALYM K D I I K N 0 0 0 1 0 0 1 0 0 3 0 1 0 1 0 0 0 0 0 1 0 0 8 0 975.56408 Q8NAV1 Q8NAV1 85 92 PRPF38A Pre-mRNA-splicing factor 38A yes yes 2 0.020355 57.177 2 0.56971 0.73595 7.2718 2 Median 0.56971 0.73595 7.2718 2 0 Median NaN NaN NaN 0 0 Median 11083000 6387900 4695500 11083000 6387900 4695500 0 0 0 1652 1647 1696 6112;6113 9242;9243;9244 9243 3 DIKPENLLLGLK ADALMYCHGKKVIHRDIKPENLLLGLKGEL IHRDIKPENLLLGLKGELKIADFGWSVHAP R D I L K G 0 0 1 1 0 0 1 1 0 1 4 2 0 0 1 0 0 0 0 0 0 0 12 1 1351.8075 B2RC06;J3KT86;Q96GD4;J3KTD6;J3QLN8;J3QR41 B2RC06 200 211 AURKB Aurora kinase B no no 2;3 0.00019024 132.25 8 2 0.90617 1.1276 6.7239 10 Median 0.92115 1.1276 5.4565 8 0 Median 0.73381 1.1101 14.083 2 0 Median 583870000 299410000 284460000 569100000 291250000 277850000 14773000 8156700 6615900 1653 731;1686 1697 6114;6115;6116;6117;6118;6119;6120;6121;6122;6123 9245;9246;9247;9248;9249;9250;9251;9252;9253;9254;9255;9256 9248 12 DIKPENLLLGSAGELK ANALSYCHSKRVIHRDIKPENLLLGSAGEL IKPENLLLGSAGELKIADFGWSVHAPSSRR R D I L K I 1 0 1 1 0 0 2 2 0 1 4 2 0 0 1 1 0 0 0 0 0 0 16 1 1695.9407 O14965;Q5QPD4;B4DX16;A3KFJ0;B2R6Z3 O14965 256 271 AURKA Aurora kinase A yes no 2;3 0.010797 68.463 4 0.74237 0.90524 14.465 4 Median 0.74237 0.90524 14.465 4 0 Median NaN NaN NaN 0 0 Median 21979000 11082000 10898000 21979000 11082000 10898000 0 0 0 1654 1172 1698 6124;6125;6126;6127 9257;9258;9259;9260;9261;9262 9258 6 DILDEEK NICQKLSPDGGKIPKDILDEEKFNVELIVQ PDGGKIPKDILDEEKFNVELIVQCIRLSEM K D I E K F 0 0 0 2 0 0 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 7 0 860.41273 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8;Q8N7L7 B2RWN5 1276 1282 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 1 0.05062 95.531 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 379040 0 379040 379040 0 379040 0 0 0 1655 748 1699 6128 9263 9263 1 DILELGGPEGDAASGTISK ______________________________ LGGPEGDAASGTISKKDIINPDKKKSKKSS R D I S K K 2 0 0 2 0 0 2 4 0 2 2 1 0 0 1 2 1 0 0 0 0 0 19 0 1828.9054 B4DQG8;Q9NPF5;Q5TG40;Q5TG38;Q5TG39;B4DTH3;B4DEF2;B4DTU6;Q5TG36;B4DU03 B4DQG8 9 27 DMAP1 DNA methyltransferase 1-associated protein 1 yes no 2 0.00057101 49.929 2 0.66441 0.98187 NaN 1 Median NaN NaN NaN 0 0 Median 0.66441 0.98187 NaN 1 0 Median 10496000 8097100 2399000 0 0 0 10496000 8097100 2399000 1656 850 1700 6129;6130 9264;9265 9264 2 DILETHLR VCVNLMKALKMSPYKDILETHLREKITAQS LKMSPYKDILETHLREKITAQSIEELCAVN K D I L R E 0 1 0 1 0 0 1 0 1 1 2 0 0 0 0 0 1 0 0 0 0 0 8 0 995.53999 P78527 P78527 1413 1420 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0095821 75.189 1 2 0.64258 0.97441 29.631 3 Median 0.44108 0.5876 NaN 1 0 Median 0.64939 0.98153 1.0288 2 0 Median 60017000 38567000 21449000 26301000 18966000 7334400 33716000 19601000 14115000 1657 1427 1701 6131;6132;6133 9266;9267;9268 9266 3 DILIQYDR YYQKYVDEASKKEIKDILIQYDRTLLVADP ASKKEIKDILIQYDRTLLVADPRRCESKKF K D I D R T 0 1 0 2 0 1 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 0 8 0 1034.5397 P62249;M0R210;A0A087WZ27 P62249 110 117 RPS16;ZNF90 40S ribosomal protein S16 yes no 1;2 0.0022076 116.37 6 2 0.7935 1.1008 19.313 7 Median 0.76415 1.0473 6.0779 5 0 Median 0.96916 1.5585 4.946 2 0 Median 478030000 272360000 205670000 383950000 224260000 159690000 94083000 48102000 45981000 1658 1400 1702 6134;6135;6136;6137;6138;6139;6140;6141 9269;9270;9271;9272;9273;9274;9275;9276;9277;9278;9279;9280;9281;9282;9283;9284;9285;9286;9287 9269 19 DILLQGLK KLLDYTEKPLYENLRDILLQGLKAIGSKDD PLYENLRDILLQGLKAIGSKDDGKLDLSVV R D I L K A 0 0 0 1 0 1 0 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 8 0 898.54877 A8K245;Q99986;H0YJ50;H0YJJ9 A8K245 322 329 VRK1 Serine/threonine-protein kinase VRK1 yes no 2 0.0099837 97.798 6 1 0.99151 1.2568 31.733 4 Median 1.0224 1.2987 13.01 3 0 Median 0.49955 0.7432 NaN 1 0 Median 36508000 17076000 19432000 25203000 9883400 15320000 11305000 7192400 4112500 1659 582 1703 6142;6143;6144;6145;6146;6147;6148 9288;9289;9290;9291;9292;9293;9294;9295;9296;9297 9295 10 DILLRPELEELR DHTVCHLLFANQTEKDILLRPELEELRNKH TEKDILLRPELEELRNKHSARFKLWYTLDR K D I L R N 0 2 0 1 0 0 3 0 0 1 4 0 0 0 1 0 0 0 0 0 0 0 12 1 1494.8406 A0A024R4X0;P00387;Q6ZVI6 A0A024R4X0 205 216 CYB5R3 NADH-cytochrome b5 reductase;NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 3 0.014617 32.567 1 1 1.83 2.4654 130.41 2 Median 0.73886 0.98045 NaN 1 0 Median 4.5324 6.1995 NaN 1 0 Median 22092000 10184000 11908000 15110000 8997300 6112300 6982100 1186900 5795300 1660 129 1704 6149;6150 9298;9299 9299 2 DILLVNDHLLNFVR IRHDVIVSIVTAAKKDILLVNDHLLNFVRE KDILLVNDHLLNFVRERTLDKRWRVRKEAM K D I V R E 0 1 2 2 0 0 0 0 1 1 4 0 0 1 0 0 0 0 0 2 0 0 14 0 1679.9359 Q9NTI5;B7Z5S1 Q9NTI5 381 394 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 3 0.00056977 78.964 2 0.95616 1.2543 NaN 1 Median 0.95616 1.2543 NaN 1 0 Median NaN NaN NaN 0 0 Median 2977000 2458100 518950 2977000 2458100 518950 0 0 0 1661 1759 1705 6151;6152 9300;9301;9302 9302 3 DILPCLDGYLK WSIYIDRHVMQPYYKDILPCLDGYLKTSAL PYYKDILPCLDGYLKTSALSDETKNNWEVS K D I L K T 0 0 0 2 1 0 0 1 0 1 3 1 0 0 1 0 0 0 1 0 0 0 11 0 1305.6639 P78527;B4DL41 P78527 791 801 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.0060271 86.882 3 0.41509 0.52785 0.70859 2 Median 0.41509 0.52785 0.70859 2 0 Median NaN NaN NaN 0 0 Median 40736000 34442000 6294700 40736000 34442000 6294700 0 0 0 1662 1427 1706 6153;6154;6155 9303;9304;9305 9303 3 DILQNVFK AAWNKEDFPWSGKVKDILQNVFKLEKFRPL PWSGKVKDILQNVFKLEKFRPLQLETINVT K D I F K L 0 0 1 1 0 1 0 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 8 0 975.53893 A0A024RAV2;P46063;F5H4P4;F5H3W0;F5H2L2;F8WA66;F8WD97 A0A024RAV2 81 88 RECQL ATP-dependent DNA helicase Q1 yes no 2 0.00088198 89.673 2 1 0.6492 0.85741 78.588 2 Median 0.38802 0.49187 NaN 1 0 Median 1.0862 1.4946 NaN 1 0 Median 13069000 6449600 6619300 9019700 4479000 4540700 4049200 1970700 2078600 1663 250 1707 6156;6157;6158 9306;9307;9308;9309;9310 9306 5 DILTAIAADLCK QQLEALRRMVQEREKDILTAIAADLCKSEF REKDILTAIAADLCKSEFNVYSQEVITVLG K D I C K S 3 0 0 2 1 0 0 0 0 2 2 1 0 0 0 0 1 0 0 0 0 0 12 0 1302.6853 J3QRD1;Q59H65;P51648;J3QKK9;K7EN73;J3KTG1;C9JGJ2;I3L0X1 J3QRD1 40 51 ALDH3A2 Fatty aldehyde dehydrogenase yes no 2 1.3122E-22 161.17 4 0.56262 0.70327 6.5029 4 Median 0.56262 0.70327 6.5029 4 0 Median NaN NaN NaN 0 0 Median 33893000 20934000 12960000 33893000 20934000 12960000 0 0 0 1664 1145 1708 6159;6160;6161;6162 9311;9312;9313;9314;9315;9316;9317;9318;9319 9317 9 DILVATDVAGR EQREFALSNLKAGAKDILVATDVAGRGIDI AGAKDILVATDVAGRGIDIQDVSMVVNYDM K D I G R G 2 1 0 2 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 2 0 0 11 0 1128.6139 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56 B3KY11 696 706 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.023986 51.276 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1665 45 1709 6163 9320 9320 1 DILVEVNHPFIVK ATLKVRDRVRTKMERDILVEVNHPFIVKLH ERDILVEVNHPFIVKLHYAFQTEGKLYLIL R D I V K L 0 0 1 1 0 0 1 0 1 2 1 1 0 1 1 0 0 0 0 3 0 0 13 0 1521.8555 B1AXG2;B1AXG1;B4DKZ2;B4DG22;B7ZB17;P51812;Q9UK32 B1AXG2 92 104 RPS6KA3;RPS6KA6 Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6 yes no 2 0.046904 28.958 1 0.6975 0.90958 NaN 1 Median 0.6975 0.90958 NaN 1 0 Median NaN NaN NaN 0 0 Median 4978400 2610700 2367600 4978400 2610700 2367600 0 0 0 1666 678 1710 6164 9321 9321 1 DINESDEVEVYSR PFHDVRFPPPVGYNKDINESDEVEVYSRAN NKDINESDEVEVYSRANEKEPCCWWLAKVR K D I S R A 0 1 1 2 0 0 3 0 0 1 0 0 0 0 0 2 0 0 1 2 0 0 13 0 1553.6845 X5DQX7;Q06787;W5ZQ92;R9WQY1;A8MQB8;G3V0J0;X5D907;R9WNI0;R9WPL0;A0A087WXI3;A0A0K0MJ24;Q8IXW7 X5DQX7 58 70 FMR1 Fragile X mental retardation protein 1 yes no 2 4.1622E-20 185.25 4 2 0.94996 1.2766 13.086 6 Median 0.91365 1.2139 7.8145 4 0 Median 1.0209 1.5156 3.4703 2 0 Median 85439000 44899000 40541000 55446000 29475000 25971000 29993000 15423000 14570000 1667 1447 1711 6165;6166;6167;6168;6169;6170 9322;9323;9324;9325;9326;9327;9328;9329 9324 8 DINSVAIAPNDK PILLQAQTTQRCHDKDINSVAIAPNDKLLA HDKDINSVAIAPNDKLLATGSQDRTAKLWA K D I D K L 2 0 2 2 0 0 0 0 0 2 0 1 0 0 1 1 0 0 0 1 0 0 12 0 1255.6408 Q12788;J3KNP2;A0JLS5 Q12788 481 492 TBL3 Transducin beta-like protein 3 no no 2 4.8197E-12 128.01 4 2 0.79346 1.0309 4.706 6 Median 0.84519 1.0481 5.8358 4 0 Median 0.67011 1.0115 1.6355 2 0 Median 109250000 59475000 49776000 75693000 40600000 35093000 33559000 18876000 14683000 1668 1456 1712 6171;6172;6173;6174;6175;6176 9330;9331;9332;9333;9334;9335;9336;9337;9338;9339 9335 10 DINTDFLLVVLR IRGISHVIVDEIHERDINTDFLLVVLRDVV HERDINTDFLLVVLRDVVQAYPEVRIVLMS R D I L R D 0 1 1 2 0 0 0 0 0 1 3 0 0 1 0 0 1 0 0 2 0 0 12 0 1416.7977 Q08211;Q58F26;Q6PJK6 Q08211 517 528 DHX9 ATP-dependent RNA helicase A yes no 2 0.019944 80.231 1 0.65045 0.8604 NaN 1 Median 0.65045 0.8604 NaN 1 0 Median NaN NaN NaN 0 0 Median 10901000 6416300 4484400 10901000 6416300 4484400 0 0 0 1669 1448 1713 6177 9340 9340 0 DINTFLGTPVQK GKAMHTPKPAVGEEKDINTFLGTPVQKLDQ EEKDINTFLGTPVQKLDQPGNLPGSNRRLQ K D I Q K L 0 0 1 1 0 1 0 1 0 1 1 1 0 1 1 0 2 0 0 1 0 0 12 0 1331.7085 P46013 P46013 1794 1805 MKI67 Antigen KI-67 yes yes 2 3.9433E-80 228.64 3 2 0.91266 1.2957 8.3468 5 Median 0.92815 1.2193 4.2755 3 0 Median 0.90118 1.4238 0.18996 2 0 Median 696610000 363640000 332970000 376610000 201450000 175170000 320000000 162190000 157800000 1670 1342 1714 6178;6179;6180;6181;6182 9341;9342;9343;9344;9345;9346;9347;9348 9346 8 DINTFSMR NMIIQSISLLDQLDKDINTFSMRVREWYGY LLDQLDKDINTFSMRVREWYGYHFPELVKI K D I M R V 0 1 1 1 0 0 0 0 0 1 0 0 1 1 0 1 1 0 0 0 0 0 8 0 982.45422 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 181 188 NOP56 Nucleolar protein 56 yes no 2 0.010409 59.245 1 0.46334 0.71183 NaN 1 Median NaN NaN NaN 0 0 Median 0.46334 0.71183 NaN 1 0 Median 18578000 12551000 6026800 0 0 0 18578000 12551000 6026800 1671 647 1715 6183 9349 9349 221 1 DINTFVGTPVEK GKAMHTPKAAVGEEKDINTFVGTPVEKLDL EEKDINTFVGTPVEKLDLLGNLPGSKRRPQ K D I E K L 0 0 1 1 0 0 1 1 0 1 0 1 0 1 1 0 2 0 0 2 0 0 12 0 1318.6769 P46013 P46013 1916 1927 MKI67 Antigen KI-67 yes yes 2 1.6461E-29 172.8 5 2 0.95579 1.259 30.436 7 Median 0.94019 1.2266 30.371 5 0 Median 0.97981 1.5467 3.5788 2 0 Median 896290000 441420000 454870000 490480000 239740000 250750000 405810000 201690000 204120000 1672 1342 1716 6184;6185;6186;6187;6188;6189;6190 9350;9351;9352;9353;9354;9355;9356;9357;9358;9359;9360;9361;9362;9363 9359 14 DIPGLTDTTVPR NLSVLNLVIVKKGEKDIPGLTDTTVPRRLG GEKDIPGLTDTTVPRRLGPKRASRIRKLFN K D I P R R 0 1 0 2 0 0 0 1 0 1 1 0 0 0 2 0 3 0 0 1 0 0 12 0 1283.6721 Q96DV6;A2A3R6;P62753;A2A3R5;Q9BZU1 Q96DV6 120 131 RPS6 40S ribosomal protein S6 yes no 2 6.2808E-12 147.4 25 7 0.89864 1.2195 20.573 23 Median 0.91838 1.2608 13.319 19 0 Median 0.51286 0.8034 3.1123 4 0 Median 12459000000 6977100000 5481700000 8943900000 4580400000 4363500000 3514900000 2396700000 1118200000 1673 535 1717 6191;6192;6193;6194;6195;6196;6197;6198;6199;6200;6201;6202;6203;6204;6205;6206;6207;6208;6209;6210;6211;6212;6213;6214;6215;6216;6217;6218;6219;6220;6221;6222 9364;9365;9366;9367;9368;9369;9370;9371;9372;9373;9374;9375;9376;9377;9378;9379;9380;9381;9382;9383;9384;9385;9386;9387;9388;9389;9390;9391;9392;9393;9394;9395;9396;9397;9398;9399;9400;9401;9402;9403;9404;9405;9406;9407;9408;9409;9410;9411;9412;9413;9414;9415;9416;9417;9418;9419;9420;9421;9422;9423;9424;9425;9426;9427;9428;9429;9430;9431;9432;9433;9434;9435;9436;9437 9404 74 DIPGLTDTTVPRR NLSVLNLVIVKKGEKDIPGLTDTTVPRRLG EKDIPGLTDTTVPRRLGPKRASRIRKLFNL K D I R R L 0 2 0 2 0 0 0 1 0 1 1 0 0 0 2 0 3 0 0 1 0 0 13 1 1439.7732 Q96DV6;A2A3R6;P62753;A2A3R5;Q9BZU1 Q96DV6 120 132 RPS6 40S ribosomal protein S6 yes no 2;3 3.123E-12 157.78 8 4 0.96104 1.3184 50.768 12 Median 1.0166 1.3882 6.4434 8 0 Median 0.31879 0.48633 4.1335 4 0 Median 739980000 402600000 337380000 575020000 279760000 295250000 164960000 122830000 42131000 1674 535 1718 6223;6224;6225;6226;6227;6228;6229;6230;6231;6232;6233;6234 9438;9439;9440;9441;9442;9443;9444;9445;9446;9447;9448;9449;9450;9451;9452;9453;9454;9455 9442 18 DIPGLTDTTVPRRLGPK NLSVLNLVIVKKGEKDIPGLTDTTVPRRLG PGLTDTTVPRRLGPKRASRIRKLFNLSKED K D I P K R 0 2 0 2 0 0 0 2 0 1 2 1 0 0 3 0 3 0 0 1 0 0 17 2 1835.0265 Q96DV6;A2A3R6;P62753;A2A3R5;Q9BZU1 Q96DV6 120 136 RPS6 40S ribosomal protein S6 yes no 3 0.00040359 47.545 3 0.90823 1.1016 1.4044 3 Median 0.90823 1.1016 1.4044 3 0 Median NaN NaN NaN 0 0 Median 67606000 36720000 30886000 67606000 36720000 30886000 0 0 0 1675 535 1719 6235;6236;6237 9456;9457;9458;9459 9459 4 DIQDSLTVSNEVQTAK VHYYEDGNVQLVSHKDIQDSLTVSNEVQTA IQDSLTVSNEVQTAKEFIKIVEAAENEYQT K D I A K E 1 0 1 2 0 2 1 0 0 1 1 1 0 0 0 2 2 0 0 2 0 0 16 0 1746.8636 Q53GE2;Q53GC7;A4D0V4;P47755;B4DE01 Q53GE2 211 226 CAPZA2 F-actin-capping protein subunit alpha-2 yes no 2 8.8434E-25 168.76 3 1.0113 1.2315 21.51 3 Plateau 1.0113 1.2315 21.51 3 0 Plateau NaN NaN NaN 0 0 Median 7261900 4203900 3058000 7261900 4203900 3058000 0 0 0 1676 545 1720 6238;6239;6240 9460;9461;9462;9463;9464;9465 9461 6 DIQEESTFSSR LLSPARLYAIAAKEKDIQEESTFSSRKISN AKEKDIQEESTFSSRKISNQFDWALMRLDL K D I S R K 0 1 0 1 0 1 2 0 0 1 0 0 0 1 0 3 1 0 0 0 0 0 11 0 1297.5786 E5KNY5;P42704;B8ZZ38;A0A0C4DG06;C9JCA9 E5KNY5 67 77 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 3.1867E-06 115.78 5 2 0.35526 0.48067 4.1918 3 Plateau 0.35526 0.48067 4.1918 3 0 Plateau NaN NaN NaN 0 0 Median 37614000 23210000 14404000 31267000 23210000 8057400 6346400 0 6346400 1677 1001 1721 6241;6242;6243;6244;6245;6246;6247 9466;9467;9468;9469;9470;9471;9472;9473;9474;9475 9472 10 DIQENDEEAVQVK DREASIDILHSIVKRDIQENDEEAVQVKEQ KRDIQENDEEAVQVKEQSILELGSLLAKTG R D I V K E 1 0 1 2 0 2 3 0 0 1 0 1 0 0 0 0 0 0 0 2 0 0 13 0 1515.7053 O00231;B4DTS5;J3QRY4 O00231 34 46 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 2 0.00044988 91.549 2 1 0.55631 0.72768 NaN 1 Median 0.55631 0.72768 NaN 1 0 Median NaN NaN NaN 0 0 Median 5121300 3145300 1976100 3997100 3145300 851820 1124200 0 1124200 1678 1165 1722 6248;6249;6250 9476;9477;9478;9479 9478 3 DIQLAR NLCAIHAKRVTIMPKDIQLARRIRGERA__ AKRVTIMPKDIQLARRIRGERA________ K D I A R R 1 1 0 1 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 6 0 714.40244 B2R4P9;P84243;B4E380;K7EK07;Q16695;Q6NXT2;A8K4Y7;P68431;Q71DI3 B2R4P9 124 129 H3F3A;H3F3B;HIST3H3;H3F3C;HIST1H3A;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.3C;Histone H3.1;Histone H3.2 no no 2 0.0086583 95.378 2 1 0.64975 0.9052 NaN 1 Median NaN NaN NaN 0 0 Median 0.64975 0.9052 NaN 1 0 Median 8932900 5442400 3490500 0 0 0 8932900 5442400 3490500 1679 685;1424;1605 1723 6251;6252;6253 9480;9481;9482 9480 3 DIQLARR NLCAIHAKRVTIMPKDIQLARRIRGERA__ KRVTIMPKDIQLARRIRGERA_________ K D I R R I 1 2 0 1 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 7 1 870.50355 B2R4P9;P84243;B4E380;K7EK07;Q16695;Q6NXT2;A8K4Y7;P68431;Q71DI3 B2R4P9 124 130 H3F3A;H3F3B;HIST3H3;H3F3C;HIST1H3A;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.3C;Histone H3.1;Histone H3.2 no no 2 0.012251 117.93 3 0.6512 0.88882 1.2112 3 Plateau 0.6512 0.88882 1.2112 3 0 Plateau NaN NaN NaN 0 0 Median 173530000 102390000 71134000 173530000 102390000 71134000 0 0 0 1680 685;1424;1605 1724 6254;6255;6256 9483;9484;9485;9486 9486 4 DIQLARRIRGERA NLCAIHAKRVTIMPKDIQLARRIRGERA__ PKDIQLARRIRGERA_______________ K D I R A - 2 4 0 1 0 1 1 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 13 4 1552.891 B2R4P9;P84243;B4E380;Q16695;Q6NXT2;A8K4Y7;P68431;Q71DI3 B2R4P9 124 136 H3F3A;HIST3H3;H3F3C;HIST1H3A;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.3C;Histone H3.1;Histone H3.2 no no 3;4 0.0043069 38.178 3 0.63693 0.76262 10.723 3 Median 0.63693 0.76262 10.723 3 0 Median NaN NaN NaN 0 0 Median 237240000 135600000 101640000 237240000 135600000 101640000 0 0 0 1681 685;1424;1605 1725 6257;6258;6259 9487;9488;9489;9490 9488 4 DIQNTQCLLNVEHLSAGCPHVTLQFADSK QDDDARTDAVDSVVRDIQNTQCLLNVEHLS SAGCPHVTLQFADSKGDVGLGLVKEGLVMV R D I S K G 2 0 2 2 2 3 1 1 2 1 4 1 0 1 1 2 2 0 0 2 0 0 29 0 3294.5761 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B4E299 A0A140VK49 820 848 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 4 0.0069108 37.118 1 0.49305 0.62545 NaN 1 Median 0.49305 0.62545 NaN 1 0 Median NaN NaN NaN 0 0 Median 5333500 3789100 1544400 5333500 3789100 1544400 0 0 0 1682 508 1726 6260 9491 9491 1 DIQSCTVEVHFQK SKKLSVLIHNSDEHKDIQSCTVEVHFQKII HKDIQSCTVEVHFQKIIDKEGDDYEVIPNS K D I Q K I 0 0 0 1 1 2 1 0 1 1 0 1 0 1 0 1 1 0 0 2 0 0 13 0 1589.7508 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9J578;C9JVD8;C9JWF0;C9IYK2;C9JJ64 Q9NTJ3 154 166 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 6.8095E-20 180.66 7 4 0.68038 0.85824 11.957 11 Median 0.68967 0.87327 4.0512 7 0 Median 0.46604 0.70293 3.2088 4 0 Median 402490000 238950000 163540000 333830000 193590000 140240000 68657000 45363000 23293000 1683 1760 1727 6261;6262;6263;6264;6265;6266;6267;6268;6269;6270;6271 9492;9493;9494;9495;9496;9497;9498;9499;9500;9501;9502;9503;9504;9505;9506;9507;9508;9509 9495 18 DIRPEYREDFVLTVTGK VKQKWASRLLAKLRKDIRPEYREDFVLTVT RPEYREDFVLTVTGKKPPCCVLSNPDQKGK K D I G K K 0 2 0 2 0 0 2 1 0 1 1 1 0 1 1 0 2 0 1 2 0 0 17 2 2037.0531 S4R3K4;B1AKN6;B1AKN7;B1AKN5;B4DRN9;B1AKN8;Q12857 S4R3K4 35 51 NFIA Nuclear factor 1;Nuclear factor 1 A-type yes no 3 0.014581 49.595 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9410700 5832000 3578700 9410700 5832000 3578700 0 0 0 1684 674 1728 6272;6273 9510;9511 9510 2 DISEASVFDAYVLPK KKFVIRNIVEAAAVRDISEASVFDAYVLPK DISEASVFDAYVLPKLYVKLHYCVSCAIHS R D I P K L 2 0 0 2 0 0 1 0 0 1 1 1 0 1 1 2 0 0 1 2 0 0 15 0 1652.8298 A0A024RB14;P62854;Q75MH1 A0A024RB14 52 66 RPS26 40S ribosomal protein S26 yes no 2 8.653E-46 190.15 6 2 0.9224 1.2036 26.529 6 Median 0.9399 1.236 2.9367 4 0 Median 0.46795 0.73431 1.4995 2 0 Median 9224300000 5434400000 3789800000 7629100000 4361700000 3267400000 1595200000 1072800000 522410000 1685 255 1729 6274;6275;6276;6277;6278;6279;6280;6281 9512;9513;9514;9515;9516;9517;9518;9519;9520;9521;9522;9523;9524;9525;9526;9527;9528;9529 9519 18 DISEVIALGVPNPR AAPDKRSKLQRNENRDISEVIALGVPNPRT RDISEVIALGVPNPRTSNEVQYDQRLFNQS R D I P R T 1 1 1 1 0 0 1 1 0 2 1 0 0 0 2 1 0 0 0 2 0 0 14 0 1478.8093 G3V4X8;B7Z9X2;B4DY36;A0A024R6E3;Q6I9S2;G3V3A4;B4DEG7;Q13573;Q9ULA6 G3V4X8 225 238 SNW1 SNW domain-containing protein 1 yes no 2 0.041393 35.414 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1040500 1040500 0 1040500 1040500 0 0 0 0 1686 161 1730 6282 9530 9530 1 DISLSDYK PNFKATAVMPDGQFKDISLSDYKGKYVVFF MPDGQFKDISLSDYKGKYVVFFFYPLDFTF K D I Y K G 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 2 0 0 1 0 0 0 8 0 939.45493 A0A0A0MSI0;Q06830 A0A0A0MSI0 28 35 PRDX1 Peroxiredoxin-1 yes no 2 0.026922 85.212 2 1 2.6706 4.0037 93.867 3 Plateau 0.65849 0.84457 11.15 2 0 Median 2.8093 4.268 NaN 1 0 Median 30484000 15067000 15417000 19809000 12002000 7806900 10675000 3065200 7609600 1687 397 1731 6283;6284;6285 9531;9532;9533 9532 3 DISQLQIDLTGALGK YYEYRKAKDQLDIAKDISQLQIDLTGALGK DISQLQIDLTGALGKRTRFQENYVAQLILD K D I G K R 1 0 0 2 0 2 0 2 0 2 3 1 0 0 0 1 1 0 0 0 0 0 15 0 1570.8566 B4DRC7;Q6P3X3 B4DRC7 209 223 TTC27 Tetratricopeptide repeat protein 27 yes no 2 0.0014569 114.87 2 0.64754 0.79535 NaN 1 Median 0.64754 0.79535 NaN 1 0 Median NaN NaN NaN 0 0 Median 3909700 2739500 1170200 3909700 2739500 1170200 0 0 0 1688 852 1732 6286;6287 9534;9535 9534 2 DISSSLNSLADSNAR NGNVEAKVVCLFRRRDISSSLNSLADSNAR DISSSLNSLADSNAREFEEESKQPGVSEQQ R D I A R E 2 1 2 2 0 0 0 0 0 1 2 0 0 0 0 5 0 0 0 0 0 0 15 0 1548.738 A0A024R534;O94776 A0A024R534 50 64 MTA2 Metastasis-associated protein MTA2 yes no 2 3.3996E-61 213.59 5 2 0.85102 1.2457 40.38 4 Median 0.63533 0.85471 10.633 2 0 Median 1.0572 1.7058 1.8182 2 0 Median 183310000 109670000 73644000 78024000 58992000 19033000 105290000 50677000 54611000 1689 133 1733 6288;6289;6290;6291;6292;6293;6294 9536;9537;9538;9539;9540;9541;9542;9543;9544;9545 9539 10 DISSSLNSLADSNAREFEEESK NGNVEAKVVCLFRRRDISSSLNSLADSNAR SLADSNAREFEEESKQPGVSEQQRHQLKHR R D I S K Q 2 1 2 2 0 0 4 0 0 1 2 1 0 1 0 6 0 0 0 0 0 0 22 1 2427.1038 A0A024R534;O94776 A0A024R534 50 71 MTA2 Metastasis-associated protein MTA2 yes no 3 0.00026317 60.602 2 0.68894 0.92906 NaN 1 Median 0.68894 0.92906 NaN 1 0 Median NaN NaN NaN 0 0 Median 7285500 1994100 5291400 7285500 1994100 5291400 0 0 0 1690 133 1734 6295;6296 9546;9547;9548 9547 3 DISSTLIALADK NGNVEAKVVCFYRRRDISSTLIALADKHAT RRRDISSTLIALADKHATLSVCYKAGPGAD R D I D K H 2 0 0 2 0 0 0 0 0 2 2 1 0 0 0 2 1 0 0 0 0 0 12 0 1245.6816 E7ESY4;Q13330;H7C3F3 E7ESY4 50 61 MTA1 Metastasis-associated protein MTA1 yes no 2 0.00019954 96.015 4 2 0.95338 1.2032 31.162 6 Median 0.93021 1.17 3.8975 4 0 Median 1.4231 2.112 11.109 2 0 Median 41990000 22517000 19473000 25177000 14147000 11031000 16812000 8369900 8442200 1691 1014 1735 6297;6298;6299;6300;6301;6302 9549;9550;9551;9552;9553;9554;9555;9556;9557 9553 9 DISTILDEERK GRGKDISTITGHRGKDISTILDEERKENKR HRGKDISTILDEERKENKRPQRAAAARRKK K D I R K E 0 1 0 2 0 0 2 0 0 2 1 1 0 0 0 1 1 0 0 0 0 0 11 1 1317.6776 Q96T23;H0YDG9 Q96T23 1062 1072 RSF1 Remodeling and spacing factor 1 yes no 2 0.00083553 76.465 1 2 0.61436 0.79818 NaN 1 Median 0.61436 0.79818 NaN 1 0 Median NaN NaN NaN 0 0 Median 31526000 28031000 3495400 10472000 6976500 3495400 21054000 21054000 0 1692 1702 1736 6303;6304;6305 9558;9559;9560;9561 9558 4 DISTITGHR DDIKEADGGGVGRGKDISTITGHRGKDIST GVGRGKDISTITGHRGKDISTILDEERKEN K D I H R G 0 1 0 1 0 0 0 1 1 2 0 0 0 0 0 1 2 0 0 0 0 0 9 0 998.51451 Q96T23;H0YDG9 Q96T23 1051 1059 RSF1 Remodeling and spacing factor 1 yes no 2 0.0054884 71.877 2 0.53243 0.71558 NaN 1 Median 0.53243 0.71558 NaN 1 0 Median NaN NaN NaN 0 0 Median 22359000 16706000 5653200 22359000 16706000 5653200 0 0 0 1693 1702 1737 6306;6307 9562;9563 9562 2 DISTTLNADEAVAR RIPAVKERIAKFFGKDISTTLNADEAVARG KDISTTLNADEAVARGCALQCAILSPAFKV K D I A R G 3 1 1 2 0 0 1 0 0 1 1 0 0 0 0 1 2 0 0 1 0 0 14 0 1474.7264 A0A024RDQ0;A0A024RDS1;Q92598;B4DF68;A0A0A0MSM0;B4DY72;D6RJ96;B3KNM0;E9PDE8;B4DXT2;Q53ZP9;A0A140VKE7;O95757;B4DZR0 A0A024RDQ0 361 374 HSPH1;HSPA4L Heat shock protein 105 kDa;Heat shock 70 kDa protein 4L no no 2 3.971E-14 110.08 3 0.29934 0.40227 9.8578 3 Median 0.29934 0.40227 9.8578 3 0 Median NaN NaN NaN 0 0 Median 32924000 24352000 8572700 32924000 24352000 8572700 0 0 0 1694 320;513 1738 6308;6309;6310 9564;9565;9566;9567;9568;9569 9569 6 DITDPLSLNTCTDEGHVVLASPLK LPAKGRDPVEILIPKDITDPLSLNTCTDEG TCTDEGHVVLASPLKTGRKRHRHRGQHHQQ K D I L K T 1 0 1 3 1 0 1 1 1 1 4 1 0 0 2 2 3 0 0 2 0 0 24 0 2594.2898 Q7L2J0;A8K5Q1 Q7L2J0 234 257 MEPCE 7SK snRNA methylphosphate capping enzyme yes no 3 0.01344 18.719 2 0.51574 0.65729 13.044 2 Median 0.51574 0.65729 13.044 2 0 Median NaN NaN NaN 0 0 Median 8723300 6294500 2428900 8723300 6294500 2428900 0 0 0 1695 1611 1739 6311;6312 9570;9571 9571 2 DITLFHAMDTLQR IRQPSLHMSAAAASRDITLFHAMDTLQRNG SRDITLFHAMDTLQRNGYDLAKAMSTLVPQ R D I Q R N 1 1 0 2 0 1 0 0 1 1 2 0 1 1 0 0 2 0 0 0 0 0 13 0 1559.7766 A0A024R534;O94776 A0A024R534 228 240 MTA2 Metastasis-associated protein MTA2 yes no 3 0.0030155 40.025 1 0.89476 1.2365 NaN 1 Median NaN NaN NaN 0 0 Median 0.89476 1.2365 NaN 1 0 Median 10173000 6548000 3625100 0 0 0 10173000 6548000 3625100 1696 133 1740 6313 9572 9572 71 1 DITNVSLYPVVK TTPPETQQSPHLSLKDITNVSLYPVVKIRR SLKDITNVSLYPVVKIRRLSLSPKKNKASP K D I V K I 0 0 1 1 0 0 0 0 0 1 1 1 0 0 1 1 1 0 1 3 0 0 12 0 1346.7446 B5BUA4;Q5FBB7;A0A024R2J4 B5BUA4 443 454 SGOL1 Shugoshin-like 1 yes no 2 1.1612E-09 111.06 4 2 0.88764 1.1166 25.845 5 Median 0.88864 1.1361 8.5714 4 0 Median 0.43351 0.65571 NaN 1 0 Median 62517000 40205000 22312000 38194000 20369000 17824000 24323000 19835000 4487500 1697 895 1741 6314;6315;6316;6317;6318;6319 9573;9574;9575;9576;9577;9578;9579;9580;9581 9577 9 DITSSIHFEAYR YLRDLLIRTHMQNIKDITSSIHFEAYRVKR NIKDITSSIHFEAYRVKRLNEGSSAMANGM K D I Y R V 1 1 0 1 0 0 1 0 1 2 0 0 0 1 0 2 1 0 1 0 0 0 12 0 1437.6888 A0A0S2Z5W9;A0A024R8Q0;A0A0S2Z5A5;A0A024R8V0;Q9UHD8;A2VCQ5 A0A0S2Z5W9 317 328 SEPT9;MAFK Septin-9 yes no 2 0.0056639 50.108 1 0.8433 1.1246 NaN 1 Median 0.8433 1.1246 NaN 1 0 Median NaN NaN NaN 0 0 Median 3010800 1276400 1734400 3010800 1276400 1734400 0 0 0 1698 202 1742 6320 9582;9583 9583 2 DIVALMVR FQPDLSKFKMQSLDKDIVALMVRRAYDIAG KMQSLDKDIVALMVRRAYDIAGSTKDVKVF K D I V R R 1 1 0 1 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 2 0 0 8 0 915.52117 P11388 P11388 234 241 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.00172 118.69 8 4 0.89284 1.2219 11.799 12 Median 0.8844 1.2017 5.6068 8 0 Median 0.94305 1.4475 17.494 4 0 Median 281710000 147710000 134000000 111840000 52884000 58957000 169860000 94826000 75038000 1699 1256 1743;1744 6321;6322;6323;6324;6325;6326;6327;6328;6329;6330;6331;6332 9584;9585;9586;9587;9588;9589;9590;9591;9592;9593;9594;9595;9596;9597;9598;9599;9600 9585 506 17 DIVEELSALK PTSTRRRPKTPLGKRDIVEELSALKQLTQT PLGKRDIVEELSALKQLTQTTHTDKVPGDE R D I L K Q 1 0 0 1 0 0 2 0 0 1 2 1 0 0 0 1 0 0 0 1 0 0 10 0 1115.6074 P46013 P46013 2129 2138 MKI67 Antigen KI-67 yes yes 1;2 7.4513E-11 142.92 9 3 0.85826 1.1755 16.698 9 Median 0.8521 1.0746 13.806 6 0 Median 0.89416 1.4115 10.912 3 0 Median 534930000 270850000 264080000 295920000 148010000 147910000 239010000 122840000 116170000 1700 1342 1745 6333;6334;6335;6336;6337;6338;6339;6340;6341;6342;6343;6344 9601;9602;9603;9604;9605;9606;9607;9608;9609;9610;9611;9612;9613;9614;9615 9610 13 DIVENICGR ASPSLIKETTTGYYKDIVENICGREKSGIQ TTGYYKDIVENICGREKSGIQPLCPERSHI K D I G R E 0 1 1 1 1 0 1 1 0 2 0 0 0 0 0 0 0 0 0 1 0 0 9 0 1074.5128 P42166 P42166 324 332 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2 0.02869 81.548 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 610160 610160 0 610160 610160 0 0 0 0 1701 1335 1746 6345 9616 9616 1 DIVENYFMR TVVDCPVCKQQCFSKDIVENYFMRDSGSKA QQCFSKDIVENYFMRDSGSKAATDAQDANQ K D I M R D 0 1 1 1 0 0 1 0 0 1 0 0 1 1 0 0 0 0 1 1 0 0 9 0 1185.5488 B2R8R5;Q13263;M0R2I3 B2R8R5 128 136 TRIM28 Transcription intermediary factor 1-beta yes no 2 0.019614 42.599 2 2.5597 3.5313 11.296 2 Median NaN NaN NaN 0 0 Median 2.5597 3.5313 11.296 2 0 Median 11349000 3575200 7773700 0 0 0 11349000 3575200 7773700 1702 716 1747 6346;6347 9617;9618 9617 249 2 DIVINANPASPPLSLLVLHR LDLNSVLGKDYGALKDIVINANPASPPLSL ANPASPPLSLLVLHRLLCEHFRVLSTVHTH K D I H R L 2 1 2 1 0 0 0 0 1 2 4 0 0 0 3 2 0 0 0 2 0 0 20 0 2138.2212 B2R7M3;A0A024QZY1;Q13155;A8MU58;F8W950 B2R7M3 121 140 JTV1;AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 yes no 3 8.009E-08 104.68 3 0.38817 0.53768 3.7225 3 Median 0.38817 0.53768 3.7225 3 0 Median NaN NaN NaN 0 0 Median 35278000 24532000 10746000 35278000 24532000 10746000 0 0 0 1703 23 1748 6348;6349;6350 9619;9620;9621;9622;9623;9624 9622 6 DIVISVGIYNLVQK TRKRALSRLKLKLNKDIVISVGIYNLVQKA KDIVISVGIYNLVQKALKPPPIKLYRETNE K D I Q K A 0 0 1 1 0 1 0 1 0 3 1 1 0 0 0 1 0 0 1 3 0 0 14 0 1559.8923 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356 A0A024R1N4 266 279 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 9.7556E-24 148.56 4 0.57353 0.72221 4.9937 4 Median 0.57353 0.72221 4.9937 4 0 Median NaN NaN NaN 0 0 Median 135620000 81023000 54601000 135620000 81023000 54601000 0 0 0 1704 62 1749 6351;6352;6353;6354 9625;9626;9627;9628;9629;9630 9628 6 DIVPGDIVEIAVGDK VYRQDRKSVQRIKAKDIVPGDIVEIAVGDK DIVPGDIVEIAVGDKVPADIRLTSIKSTTL K D I D K V 1 0 0 3 0 0 1 2 0 3 0 1 0 0 1 0 0 0 0 3 0 0 15 0 1538.8192 A0A0S2Z3L2;P16615 A0A0S2Z3L2 144 158 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 2 0.0092017 78.486 3 0.56207 0.71129 NaN 1 Median 0.56207 0.71129 NaN 1 0 Median NaN NaN NaN 0 0 Median 15864000 12703000 3161100 15864000 12703000 3161100 0 0 0 1705 456 1750 6355;6356;6357 9631;9632;9633;9634 9633 4 DIVQFVPFR DGGSLRSPLGEVAIRDIVQFVPFRQFQNAP GEVAIRDIVQFVPFRQFQNAPKEALAQCVL R D I F R Q 0 1 0 1 0 1 0 0 0 1 0 0 0 2 1 0 0 0 0 2 0 0 9 0 1119.6077 A0A024R994;O75131;Q4G168;B3KWK1;B2RD40;A8K8A4;E7ENV7;B7Z370;Q96FN4;Q8IYJ1;Q96A23;O95741;Q86YQ8;Q9HCH3;Q9UBL6 A0A024R994 485 493 CPNE3;CPNE4;CPNE6;CPNE8;CPNE2;CPNE9;CPNE5;CPNE7 Copine-3;Copine-2;Copine-9;Copine-4;Copine-6;Copine-8;Copine-5;Copine-7 yes no 2 0.0017674 110.12 5 2 0.40456 0.56243 28.033 2 Median 0.40456 0.56243 28.033 2 0 Median NaN NaN NaN 0 0 Median 13632000 10226000 3406400 12238000 10226000 2012700 1393800 0 1393800 1706 214 1751 6358;6359;6360;6361;6362;6363;6364 9635;9636;9637;9638;9639;9640;9641;9642 9638 8 DIYAYLR AEDGADPNLCSEYVKDIYAYLRQLEEEQAV NLCSEYVKDIYAYLRQLEEEQAVRPKYLLG K D I L R Q 1 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 0 7 0 912.47052 P14635;E9PC90;H1UBN2;D6RHI0 P14635 173 179 CCNB1;CCNB1V G2/mitotic-specific cyclin-B1 yes no 2 0.021163 64.776 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1707 1268 1752 6365 9643 9643 1 DKADFCIIHYAGK EQGTHPKFQKPKQLKDKADFCIIHYAGKVD LKDKADFCIIHYAGKVDYKADEWLMKNMDP K D K G K V 2 0 0 2 1 0 0 1 1 2 0 2 0 1 0 0 0 0 1 0 0 0 13 1 1536.7395 A0A024R1N1;P35579;Q86XU5;B4E3S1;A0A0U4BW16;P35580 A0A024R1N1 564 576 MYH9;MYH10 Myosin-9;Myosin-10 no no 3 1.8119E-06 91.441 4 1.0101 1.2443 9.4141 4 Median 1.0101 1.2443 9.4141 4 0 Median NaN NaN NaN 0 0 Median 101860000 54013000 47851000 101860000 54013000 47851000 0 0 0 1708 61;490;1320 1753 6366;6367;6368;6369 9644;9645;9646;9647;9648 9647 5 DKDDDEVFEK FRKLLLNRCQKEFEKDKDDDEVFEKKQKEM KEFEKDKDDDEVFEKKQKEMDEAATAEERG K D K E K K 0 0 0 4 0 0 2 0 0 0 0 2 0 1 0 0 0 0 0 1 0 0 10 1 1238.5303 E7EX73;B4DSI9;E9PGM1;E7EUU4;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637;C9JF13;C9J6B6 E7EX73 691 700 EIF4G1;EIF4G1 variant protein Eukaryotic translation initiation factor 4 gamma 1 yes no 2 0.00026379 122.51 2 0.29662 0.36413 NaN 1 Median 0.29662 0.36413 NaN 1 0 Median NaN NaN NaN 0 0 Median 17488000 14804000 2683900 17488000 14804000 2683900 0 0 0 1709 747 1754 6370;6371 9649;9650 9650 2 DKDSFNEINKR D K K R 0 1 2 2 0 0 1 0 0 1 0 2 0 1 0 1 0 0 0 0 0 0 11 2 1364.6684 REV__Q9NXA5 yes no 3 0.00079247 70.977 1 0.054123 0.06385 NaN 1 Median 0.054123 0.06385 NaN 1 0 Median NaN NaN NaN 0 0 Median 14106000 13010000 1096300 14106000 13010000 1096300 0 0 0 + 1710 1850 1755 6372 9651 9651 1 DKDTSSDPLLELR ITCVDSGILRVWHDKDKDTSSDPLLELRVG DKDKDTSSDPLLELRVGPGVCRMRQDPAHP K D K L R V 0 1 0 3 0 0 1 0 0 0 3 1 0 0 1 2 1 0 0 0 0 0 13 1 1487.7468 Q6RFH5;E9PS41;B4E018 Q6RFH5 116 128 WDR74 WD repeat-containing protein 74 yes no 2 0.0027913 74.611 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5136300 0 5136300 5136300 0 5136300 0 0 0 1711 1598 1756 6373;6374 9652;9653 9652 2 DKFPGEFMK IKESKNGKKIGVFSKDKFPGEFMKSWNDCL IGVFSKDKFPGEFMKSWNDCLNKEGFDKID K D K M K S 0 0 0 1 0 0 1 1 0 0 0 2 1 2 1 0 0 0 0 0 0 0 9 1 1097.5216 Q9Y5B9;Q0VGA3 Q9Y5B9 140 148 SUPT16H FACT complex subunit SPT16 yes no 2 0.024305 60.91 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1712 1829 1757 6375 9654 9654 851 1 DKGDEEEEGEEKLEEK QPDVKEEEEEKEEEKDKGDEEEEGEEKLEE KGDEEEEGEEKLEEKQKSDAEEDGGTVSQE K D K E K Q 0 0 0 2 0 0 8 2 0 0 1 3 0 0 0 0 0 0 0 0 0 0 16 2 1891.8171 P27824 P27824 536 551 CANX Calnexin yes yes 3 0.031591 95.822 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1056300 1056300 0 1056300 1056300 0 0 0 0 1713 1303 1758 6376 9655 9655 1 DKGEYTLVVK KHVGSRLYSVSYLLKDKGEYTLVVKWGDEH SYLLKDKGEYTLVVKWGDEHIPGSPYRVVV K D K V K W 0 0 0 1 0 0 1 1 0 0 1 2 0 0 0 0 1 0 1 2 0 0 10 1 1150.6234 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;Q86TQ3 P21333 2622 2631 FLNA;FLJ00119 Filamin-A yes no 2 0.0001973 112.83 4 1.0131 1.2456 5.7041 2 Median 1.0131 1.2456 5.7041 2 0 Median NaN NaN NaN 0 0 Median 65772000 37636000 28137000 65772000 37636000 28137000 0 0 0 1714 1287 1759 6377;6378;6379;6380 9656;9657;9658;9659 9658 4 DKHDYALLIK D K I K 1 0 0 2 0 0 0 0 1 1 2 2 0 0 0 0 0 0 1 0 0 0 10 1 1214.6659 REV__B9A063 yes no 3 0.019797 61.765 1 0.88634 1.0858 NaN 1 Median 0.88634 1.0858 NaN 1 0 Median NaN NaN NaN 0 0 Median 16144000 8218600 7925300 16144000 8218600 7925300 0 0 0 + 1715 1847 1760 6381 9660 9660 1 DKIPNVR DVFDKINKAMLIRLKDKIPNVRIQAVLALS KAMLIRLKDKIPNVRIQAVLALSRLQDPKD K D K V R I 0 1 1 1 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 0 7 1 840.48175 Q9BPX3;Q6NUR1;D6RA93 Q9BPX3 153 159 NCAPG Condensin complex subunit 3 yes no 2 0.024877 92.319 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1716 1706 1761 6382 9661 9661 1 DKLDETGNSLK LPVKGFRSYVDMYLKDKLDETGNSLKVIHE MYLKDKLDETGNSLKVIHEQVNHRWEVCLT K D K L K V 0 0 1 2 0 0 1 1 0 0 2 2 0 0 0 1 1 0 0 0 0 0 11 1 1218.6092 P11388 P11388 277 287 TOP2A DNA topoisomerase 2-alpha yes yes 2 3.7684E-135 289.96 4 3 0.86863 1.0893 10.983 7 Median 0.87338 1.0638 4.4142 4 0 Median 0.78926 1.2826 1.7805 3 0 Median 2678800000 1447500000 1231300000 1839100000 980250000 858860000 839690000 467250000 372430000 1717 1256 1762 6383;6384;6385;6386;6387;6388;6389 9662;9663;9664;9665;9666;9667;9668;9669;9670;9671;9672;9673 9667 11 DKLDETGVALK LPVNGFRSYVDLYVKDKLDETGVALKVIHE LYVKDKLDETGVALKVIHELANERWDVCLT K D K L K V 1 0 0 2 0 0 1 1 0 0 2 2 0 0 0 0 1 0 0 1 0 0 11 1 1187.6398 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 270 280 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 5.4123E-17 198.62 4 2 0.65433 0.83694 9.8596 5 Median 0.66184 0.81516 2.2126 3 0 Median 0.60703 0.97579 1.8354 2 0 Median 238590000 145940000 92646000 166890000 101340000 65546000 71700000 44600000 27100000 1718 1437 1763 6390;6391;6392;6393;6394;6395 9674;9675;9676;9677;9678;9679;9680;9681;9682;9683;9684 9678 11 DKLDGNELDLSLSDLNEVPVK ______________________________ ELDLSLSDLNEVPVKELAALPKATILDLSC R D K V K E 0 0 2 4 0 0 2 1 0 0 5 2 0 0 1 2 0 0 0 2 0 0 21 1 2312.1747 Q96AG4;I3L223 Q96AG4 13 33 LRRC59 Leucine-rich repeat-containing protein 59 yes no 3 3.607E-48 182.77 4 2 0.70198 0.86017 36.541 6 Median 0.56764 0.69631 20.779 4 0 Median 0.89525 1.4443 1.6686 2 0 Median 388680000 237690000 150990000 256410000 165320000 91088000 132270000 72372000 59897000 1719 1681 1764 6396;6397;6398;6399;6400;6401 9685;9686;9687;9688;9689;9690;9691;9692;9693;9694;9695;9696 9687 12 DKLDILGAAETGSGK KDPELEALTLAPAIRDKLDILGAAETGSGK DKLDILGAAETGSGKTLAFAIPMIHAVLQW R D K G K T 2 0 0 2 0 0 1 3 0 1 2 2 0 0 0 1 1 0 0 0 0 0 15 1 1473.7675 B4DKV2;G3V529;Q9GZR7;B4DM03;Q59FS7 B4DKV2 136 150 DDX24 ATP-dependent RNA helicase DDX24 yes no 2 2.7829E-05 79.466 1 1 0.72812 1.1294 NaN 1 Median NaN NaN NaN 0 0 Median 0.72812 1.1294 NaN 1 0 Median 6487100 3756700 2730500 0 0 0 6487100 3756700 2730500 1720 822 1765 6402;6403 9697;9698 9697 2 DKNEQAFEEVFQNANFR EAILGQNAAYLGELKDKNEQAFEEVFQNAN NEQAFEEVFQNANFRSFIFRVRVKVETYND K D K F R S 2 1 3 1 0 2 3 0 0 0 0 1 0 3 0 0 0 0 0 1 0 0 17 1 2084.9552 P27694;I3L4R8 P27694 552 568 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 3 0.00048224 65.511 2 0.57952 0.77006 22.903 2 Median 0.57952 0.77006 22.903 2 0 Median NaN NaN NaN 0 0 Median 14145000 8542000 5603500 14145000 8542000 5603500 0 0 0 1721 1302 1766 6404;6405 9699;9700;9701;9702 9702 4 DKYPNLQVIGGNVVTAAQAK QGNSIFQINMIKYIKDKYPNLQVIGGNVVT LQVIGGNVVTAAQAKNLIDAGVDALRVGMG K D K A K N 3 0 2 1 0 2 0 2 0 1 1 2 0 0 1 0 1 0 1 3 0 0 20 1 2085.1219 P12268;H0Y4R1;B7Z1G4 P12268 292 311 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2;3 8.7417E-14 124.46 8 0.38039 0.46513 5.2832 8 Median 0.38039 0.46513 5.2832 8 0 Median NaN NaN NaN 0 0 Median 275530000 202100000 73426000 275530000 202100000 73426000 0 0 0 1722 1261 1767 6406;6407;6408;6409;6410;6411;6412;6413 9703;9704;9705;9706;9707;9708;9709;9710;9711;9712;9713;9714;9715 9712 13 DLAALGDK ASVQALQRKHEGFERDLAALGDKVNSLGET KHEGFERDLAALGDKVNSLGETAERLIQSH R D L D K V 2 0 0 2 0 0 0 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 0 801.42323 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16 Q13813 1281 1288 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.041945 48.794 2 0.718 0.91173 NaN 1 Median 0.718 0.91173 NaN 1 0 Median NaN NaN NaN 0 0 Median 9771800 5626000 4145700 9771800 5626000 4145700 0 0 0 1723 1476 1768 6414;6415 9716;9717 9717 2 DLAIYYSYGDFLLGK EEGRSRSEYLNRLKKDLAIYYSYGDFLLGK DLAIYYSYGDFLLGKLMDLFPLSELVEFLE K D L G K L 1 0 0 2 0 0 0 2 0 1 3 1 0 1 0 1 0 0 3 0 0 0 15 0 1736.8661 P46087;F5GYR3 P46087 273 287 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2 3.5014E-18 140.14 4 0.73171 0.90222 1.961 3 Plateau 0.73171 0.90222 1.961 3 0 Plateau NaN NaN NaN 0 0 Median 85926000 49417000 36508000 85926000 49417000 36508000 0 0 0 1724 1343 1769 6416;6417;6418;6419 9718;9719;9720;9721;9722;9723 9721 6 DLALGLVPGDR CRRVVHFAEPGAGTKDLALGLVPGDRLVEI AGTKDLALGLVPGDRLVEINGHNVESKSRD K D L D R L 1 1 0 2 0 0 0 2 0 0 3 0 0 0 1 0 0 0 0 1 0 0 11 0 1124.619 A0A0D9SFK2;A0A024QZ63;Q92614 A0A0D9SFK2 265 275 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 2 0.024005 51.268 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1725 6 1770 6420 9724 9724 1 DLALVNDQLLGFVR IRHDVIVTIITAAKRDLALVNDQLLGFVRE RDLALVNDQLLGFVRERTLDKRWRVRKEAM R D L V R E 1 1 1 2 0 1 0 1 0 0 4 0 0 1 0 0 0 0 0 2 0 0 14 0 1571.8671 G1UI16;Q29RF7 G1UI16 391 404 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 4.9231E-07 93.058 2 0.6235 0.8646 NaN 1 Median 0.6235 0.8646 NaN 1 0 Median NaN NaN NaN 0 0 Median 7084800 5240100 1844700 7084800 5240100 1844700 0 0 0 1726 1076 1771 6421;6422 9725;9726;9727;9728 9727 4 DLANIAEVEVSIPAK ANCEAARSRILSIQKDLANIAEVEVSIPAK DLANIAEVEVSIPAKLHNSLIGTKGRLIRS K D L A K L 3 0 1 1 0 0 2 0 0 2 1 1 0 0 1 1 0 0 0 2 0 0 15 0 1567.8457 B2R5V9;A0A024R4E5;Q00341;Q6ZS03;Q96CF6;H0Y394;Q6ZN49;H7BZC3;H7C2D1 B2R5V9 649 663 HDLBP Vigilin yes no 2 1.0673E-05 117.95 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2806900 2806900 0 2806900 2806900 0 0 0 0 1727 122 1772 6423;6424;6425 9729;9730;9731 9730 3 DLANLEVPHELPTK EAMERLKMLALLKRKDLANLEVPHELPTKQ KDLANLEVPHELPTKQDGSGVKGYEEKLNG K D L T K Q 1 0 1 1 0 0 2 0 1 0 3 1 0 0 2 0 1 0 0 1 0 0 14 0 1574.8304 A0A0U1RRM1;Q8WXI9;B3KSZ4;A0A0U1RR34;A0A0U1RRK3 A0A0U1RRM1 53 66 GATAD2B Transcriptional repressor p66-beta yes no 2;3 3.8327E-08 126.32 4 4 1.2196 1.5703 36.615 7 Median 0.822 1.0221 32.979 3 0 Median 1.283 1.9189 13.726 4 0 Median 71092000 35095000 35996000 33837000 17051000 16786000 37255000 18045000 19210000 1728 488 1773 6426;6427;6428;6429;6430;6431;6432;6433 9732;9733;9734;9735;9736;9737;9738;9739;9740;9741;9742;9743 9732 12 DLAPYLPSVTPGLK AAQIIGNMYSLTDQKDLAPYLPSVTPGLKA KDLAPYLPSVTPGLKASLLDPVPEVRTVSA K D L L K A 1 0 0 1 0 0 0 1 0 0 3 1 0 0 3 1 1 0 1 1 0 0 14 0 1469.813 E1NZA1;Q92616;A0A024RBS1 E1NZA1 1650 1663 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.0021233 77.64 3 2 0.40312 0.50971 5.4153 3 Median 0.40312 0.50971 5.4153 3 0 Median NaN NaN NaN 0 0 Median 32783000 17386000 15397000 23691000 17386000 6305300 9092000 0 9092000 1729 1000 1774 6434;6435;6436;6437;6438 9744;9745;9746;9747;9748;9749 9745 6 DLAQALINR RPVTLRTNTLKTRRRDLAQALINRGVNLDP LKTRRRDLAQALINRGVNLDPLGKWSKTGL R D L N R G 2 1 1 1 0 1 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1012.5665 P46087;F5GYR3 P46087 323 331 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 1;2 5.7048E-06 132.29 6 2 0.61655 0.88158 10.251 8 Median 0.6378 0.87987 12.127 6 0 Median 0.55234 0.88158 0.39621 2 0 Median 261760000 155490000 106270000 179820000 105120000 74700000 81943000 50369000 31574000 1730 1343 1775 6439;6440;6441;6442;6443;6444;6445;6446 9750;9751;9752;9753;9754;9755;9756;9757;9758;9759;9760;9761;9762;9763;9764 9758 15 DLAQINDLQAQLEEANK ELMKKHKAAVAQASRDLAQINDLQAQLEEA AQINDLQAQLEEANKEKQELQEKLQALQSQ R D L N K E 3 0 2 2 0 3 2 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 17 0 1911.9538 A0A0D9SFK2;A0A024QZ63;Q92614;B4DYM1;B4DZ32;B3KVF8;B4DFN7 A0A0D9SFK2 1771 1787 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 2 1.0675E-54 206.49 4 0.49288 0.62099 10.783 2 Median 0.49288 0.62099 10.783 2 0 Median NaN NaN NaN 0 0 Median 8281600 5979300 2302300 8281600 5979300 2302300 0 0 0 1731 6 1776 6447;6448;6449;6450 9765;9766;9767;9768;9769 9765 5 DLASVNNLLK LSEVEALLASEDYGKDLASVNNLLKKHQLL EDYGKDLASVNNLLKKHQLLEADISAHEDR K D L L K K 1 0 2 1 0 0 0 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 10 0 1085.6081 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16 Q13813 1689 1698 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 6.7635E-05 95.815 3 0.7313 0.92905 4.297 3 Median 0.7313 0.92905 4.297 3 0 Median NaN NaN NaN 0 0 Median 32626000 19399000 13227000 32626000 19399000 13227000 0 0 0 1732 1476 1777 6451;6452;6453 9770;9771;9772;9773 9772 4 DLASVQALLR IKEKEQLMASDDFGRDLASVQALLRKHEGL DDFGRDLASVQALLRKHEGLERDLAALEDK R D L L R K 2 1 0 1 0 1 0 0 0 0 3 0 0 0 0 1 0 0 0 1 0 0 10 0 1084.6241 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 286 295 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 1.309E-06 141.39 4 0.77548 1.0437 19.958 4 Median 0.77548 1.0437 19.958 4 0 Median NaN NaN NaN 0 0 Median 30091000 15894000 14197000 30091000 15894000 14197000 0 0 0 1733 1476 1778 6454;6455;6456;6457 9774;9775;9776;9777 9775 4 DLATVAFCDAQSTQEIHEK LLDGRDCTVEMPILKDLATVAFCDAQSTQE VAFCDAQSTQEIHEKVLNEAVGAMMYHTIT K D L E K V 3 0 0 2 1 2 2 0 1 1 1 1 0 1 0 1 2 0 0 1 0 0 19 0 2161.995 Q5SQP8;P56545 Q5SQP8 121 139 CTBP2 C-terminal-binding protein 2 yes no 3 0.012453 53.536 2 0.56584 0.74675 NaN 1 Median 0.56584 0.74675 NaN 1 0 Median NaN NaN NaN 0 0 Median 3721100 2916300 804800 3721100 2916300 804800 0 0 0 1734 1383 1779 6458;6459 9778;9779 9778 2 DLAYCVSQLPLTER LCQRFRTSRTERQQRDLAYCVSQLPLTERG RDLAYCVSQLPLTERGLRKMLDNFDCFGDK R D L E R G 1 1 0 1 1 1 1 0 0 0 3 0 0 0 1 1 1 0 1 1 0 0 14 0 1663.824 B3KMS0;Q15021;B3KY03 B3KMS0 1225 1238 NCAPD2 Condensin complex subunit 1 yes no 2 3.12E-28 157.68 4 2 0.74795 1.0236 21.619 6 Median 0.79421 1.0854 7.3446 4 0 Median 0.44713 0.72644 0.41387 2 0 Median 350110000 218220000 131890000 217310000 123240000 94068000 132790000 94972000 37822000 1735 757 1780 6460;6461;6462;6463;6464;6465 9780;9781;9782;9783;9784;9785;9786;9787;9788;9789;9790 9784 11 DLDEDANGITDEGK QANVESLKETKQNCKDLDEDANGITDEGKE KDLDEDANGITDEGKEINEKSSQLKNLSEL K D L G K E 1 0 1 4 0 0 2 2 0 1 1 1 0 0 0 0 1 0 0 0 0 0 14 0 1490.6373 Q5QJE6;J3KP30 Q5QJE6 298 311 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2 2.0969E-09 142.19 5 2 0.90036 1.1386 11.867 5 Median 0.91735 1.1492 7.7508 3 0 Median 0.65409 0.98882 2.8759 2 0 Median 90111000 46594000 43517000 61484000 29245000 32239000 28626000 17349000 11278000 1736 1561 1781 6466;6467;6468;6469;6470;6471;6472 9791;9792;9793;9794;9795;9796;9797;9798;9799;9800;9801;9802;9803;9804 9793 14 DLDEDELLGNLSETELK ______________________________ DEDELLGNLSETELKQLETVLDDLDPENAL K D L L K Q 0 0 1 3 0 0 4 1 0 0 5 1 0 0 0 1 1 0 0 0 0 0 17 0 1931.9211 Q5HYL6;Q9NYL9;H0YNU8 Q5HYL6 14 30 DKFZp686E1899;TMOD3 Tropomodulin-3 yes no 2 1.7074E-11 180.61 1 1.0445 1.326 NaN 1 Median 1.0445 1.326 NaN 1 0 Median NaN NaN NaN 0 0 Median 5929600 3207300 2722300 5929600 3207300 2722300 0 0 0 1737 1558 1782 6473 9805;9806;9807 9807 3 DLDEEIFDDDDFYHQLLR EPEILPQAPANAHLKDLDEEIFDDDDFYHQ EEIFDDDDFYHQLLRELIERKTSSLDPNDQ K D L L R E 0 1 0 6 0 1 2 0 1 1 3 0 0 2 0 0 0 0 1 0 0 0 18 0 2297.0124 Q9NY61;A0A087WWS8;A0A087WTH8 Q9NY61 452 469 AATF Protein AATF yes no 2;3 2.5822E-40 182.35 8 2 0.82007 1.121 10.006 10 Median 0.83524 1.1362 7.4825 8 0 Median 0.67147 0.96742 8.4649 2 0 Median 196430000 106210000 90229000 171980000 91780000 80203000 24452000 14425000 10026000 1738 1767 1783 6474;6475;6476;6477;6478;6479;6480;6481;6482;6483 9808;9809;9810;9811;9812;9813;9814;9815;9816;9817;9818;9819;9820;9821;9822;9823;9824;9825;9826 9815 19 DLDELSRYPEDK DQASNILASFGLSARDLDELSRYPEDKITP SARDLDELSRYPEDKITPENLPQILLQLKR R D L D K I 0 1 0 3 0 0 2 0 0 0 2 1 0 0 1 1 0 0 1 0 0 0 12 1 1478.6889 A0A0R4J2E8;A8MXP9;P43243;D6REM6;Q68D11;D6R991 A0A0R4J2E8 121 132 MATR3;DKFZp686K23100 Matrin-3 yes no 2 6.3422E-07 100.88 3 1 0.41278 0.54569 113.55 4 Median 0.38956 0.51357 9.0235 3 0 Median 3.1981 5.0633 NaN 1 0 Median 72225000 46513000 25711000 59518000 43516000 16002000 12706000 2997200 9709300 1739 445 1784 6484;6485;6486;6487 9827;9828;9829;9830 9829 4 DLDFTIDLDFK IFGTIGMRPNAKNNRDLDFTIDLDFKGQLC KNNRDLDFTIDLDFKGQLCELSCSTDYRMR R D L F K G 0 0 0 4 0 0 0 0 0 1 2 1 0 2 0 0 1 0 0 0 0 0 11 0 1340.65 A0A087X1W2;E9PKG1;Q5U8W9;H7C2I1;Q99873 A0A087X1W2 260 270 PRMT1;HRMT1L2 Protein arginine N-methyltransferase 1 yes no 2 0.00011902 123.75 2 0.80734 1.0018 NaN 1 Median 0.80734 1.0018 NaN 1 0 Median NaN NaN NaN 0 0 Median 2614600 1387200 1227300 2614600 1387200 1227300 0 0 0 1740 374 1785 6488;6489 9831;9832 9831 2 DLDIIDNYDYSHTVK LNVQFNSPLPGDAVKDLDIIDNYDYSHTVK DLDIIDNYDYSHTVKYTPTQQGNMQVLVTY K D L V K Y 0 0 1 4 0 0 0 0 1 2 1 1 0 0 0 1 1 0 2 1 0 0 15 0 1809.8421 O75369;A0A024R321;Q68CT4;E7EN95 O75369 895 909 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.00013829 122.46 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1741 1199 1786 6490;6491 9833;9834 9833 2 DLDLDAFAEELER AGALEEILENPERLKDLDLDAFAEELERQG LKDLDLDAFAEELERQGYGDKHITLYDIRA K D L E R Q 2 1 0 3 0 0 3 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 13 0 1534.7151 Q7KZ85 Q7KZ85 1101 1113 SUPT6H Transcription elongation factor SPT6 yes yes 2 1.5461E-12 124.1 3 0.67084 0.88735 11.39 2 Median 0.67084 0.88735 11.39 2 0 Median NaN NaN NaN 0 0 Median 13880000 7879000 6001300 13880000 7879000 6001300 0 0 0 1742 1609 1787 6492;6493;6494 9835;9836;9837 9837 3 DLDPNNVIIEQEER KVSLSMKVVNQGTGKDLDPNNVIIEQEERR KDLDPNNVIIEQEERRRRSFQDYTGQKITL K D L E R R 0 1 2 2 0 1 3 0 0 2 1 0 0 0 1 0 0 0 0 1 0 0 14 0 1682.8111 A0A087WYV3;B4DYA9;A0A0D9SEW3;A0A087WXF8;Q9NP64;A0A087WXU5 A0A087WYV3 35 48 ZCCHC17 Nucleolar protein of 40 kDa yes no 2 0.013269 36.303 1 1 0.77042 1.0321 11.524 2 Median 0.80976 1.1198 NaN 1 0 Median 0.733 0.95137 NaN 1 0 Median 9133500 5089100 4044400 4003000 2302000 1701100 5130400 2787200 2343300 1743 357 1788 6495;6496 9838;9839 9839 2 DLDVITIPSK CVRKRPLNKKETQMKDLDVITIPSKDVVMV ETQMKDLDVITIPSKDVVMVHEPKQKVDLT K D L S K D 0 0 0 2 0 0 0 0 0 2 1 1 0 0 1 1 1 0 0 1 0 0 10 0 1099.6125 B0AZS5;D6R9M0;O00139;B4DM85 B0AZS5 196 205 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A no no 2 0.006167 91.265 2 1 0.7031 0.89198 NaN 1 Median 0.7031 0.89198 NaN 1 0 Median NaN NaN NaN 0 0 Median 6756300 4378400 2377900 4955300 2577400 2377900 1800900 1800900 0 1744 664;1163 1789 6497;6498;6499 9840;9841;9842 9841 3 DLDVVVVSVAGAFR DEKALASILLQDHIRDLDVVVVSVAGAFRK RDLDVVVVSVAGAFRKGKSFILDFMLRYLY R D L F R K 2 1 0 2 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 5 0 0 14 0 1445.7878 F5H6I7;B4DXC4;Q6DD88;F5GWF8 F5H6I7 39 52 ATL3 Atlastin-3 yes no 2 7.78E-10 103.34 4 0.62224 0.85734 NaN 1 Median 0.62224 0.85734 NaN 1 0 Median NaN NaN NaN 0 0 Median 6613100 4840200 1772900 6613100 4840200 1772900 0 0 0 1745 868 1790 6500;6501;6502;6503 9843;9844;9845;9846 9846 4 DLEAHIDSANK SMAVAARKKLEMDLKDLEAHIDSANKNRDE MDLKDLEAHIDSANKNRDEAIKQLRKLQAQ K D L N K N 2 0 1 2 0 0 1 0 1 1 1 1 0 0 0 1 0 0 0 0 0 0 11 0 1211.5782 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1621 1631 MYH9;FLJ00279 Myosin-9 no no 2 6.2863E-85 241.13 4 1 1.0198 1.3479 69.668 5 Median 1.0249 1.337 1.9652 4 0 Linear 3.9025 6.3199 NaN 1 0 Median 872310000 416590000 455720000 824060000 406970000 417090000 48249000 9616700 38632000 1746 61;490 1791 6504;6505;6506;6507;6508 9847;9848;9849;9850;9851;9852;9853 9852 6 DLEALLNSK TKKEGDLIAAQARLKDLEALLNSKEAALST AQARLKDLEALLNSKEAALSTALSEKRTLE K D L S K E 1 0 1 1 0 0 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 9 0 1001.5393 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;Q5TCI8;H0YAB0 P02545 136 144 LMNA Prelamin-A/C;Lamin-A/C yes no 2 0.0034018 104.06 2 0.657 0.82735 NaN 1 Median 0.657 0.82735 NaN 1 0 Median NaN NaN NaN 0 0 Median 41258000 15794000 25464000 41258000 15794000 25464000 0 0 0 1747 1229 1792 6509;6510 9854;9855 9854 2 DLEDGEVPQHAGK ARRESGGRPIKPPKKDLEDGEVPQHAGKKG KKDLEDGEVPQHAGKKGKLSEHLRYCDSIL K D L G K K 1 0 0 2 0 1 2 2 1 0 1 1 0 0 1 0 0 0 0 1 0 0 13 0 1393.6474 A0A024R8H6;Q15059;A0A140F1N4 A0A024R8H6 292 304 BRD3 Bromodomain-containing protein 3 yes no 2 0.00051682 86.014 2 2 0.87374 1.2266 15.256 3 Median 1.1509 1.4924 NaN 1 0 Median 0.85063 1.1642 7.3798 2 0 Median 12581000 7633600 4947800 4989800 3536500 1453300 7591600 4097100 3494500 1748 198 1793 6511;6512;6513;6514 9856;9857;9858;9859;9860;9861;9862 9858 7 DLEDLFYK GRIYVGNLPTDVREKDLEDLFYKYGRIREI PTDVREKDLEDLFYKYGRIREIELKNRHGL K D L Y K Y 0 0 0 2 0 0 1 0 0 0 2 1 0 1 0 0 0 0 1 0 0 0 8 0 1041.5019 Q13242;A8K3M9;H0YIB4;S4R3G0;B4DFT9 Q13242 29 36 SRSF9 Serine/arginine-rich splicing factor 9 yes no 2 0.0077423 105.39 3 0.69636 0.88464 10.603 3 Median 0.69636 0.88464 10.603 3 0 Median NaN NaN NaN 0 0 Median 12599000 7359800 5239600 12599000 7359800 5239600 0 0 0 1749 1467 1794 6515;6516;6517 9863;9864;9865;9866;9867;9868 9865 6 DLEDSLAR SQLQKQLAAKEAKLRDLEDSLARERDTSRR AKEAKLRDLEDSLARERDTSRRLLAEKERE R D L A R E 1 1 0 2 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 8 0 917.44543 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;Q5TCI8 P02545 322 329 LMNA Prelamin-A/C;Lamin-A/C yes no 2 0.01658 62.659 2 1.6074 2.2702 3.6919 2 Median NaN NaN NaN 0 0 Median 1.6074 2.2702 3.6919 2 0 Median 21514000 8709400 12805000 0 0 0 21514000 8709400 12805000 1750 1229 1795 6518;6519 9869;9870 9869 2 DLEEDHACIPIK IIAGAGELHLEICLKDLEEDHACIPIKKSD CLKDLEEDHACIPIKKSDPVVSYRETVSEE K D L I K K 1 0 0 2 1 0 2 0 1 2 1 1 0 0 1 0 0 0 0 0 0 0 12 0 1438.6762 P13639;Q8TA90;B4DPU3;Q6PK56 P13639 560 571 EEF2 Elongation factor 2 yes no 2 0.0015916 88.681 2 1 0.66907 0.84909 15.234 2 Median 0.66907 0.84909 15.234 2 0 Median NaN NaN NaN 0 0 Median 22219000 9888800 12330000 16600000 9888800 6711500 5618800 0 5618800 1751 1264 1796 6520;6521;6522 9871;9872;9873 9873 1 DLEEDHACIPIKK IIAGAGELHLEICLKDLEEDHACIPIKKSD LKDLEEDHACIPIKKSDPVVSYRETVSEES K D L K K S 1 0 0 2 1 0 2 0 1 2 1 2 0 0 1 0 0 0 0 0 0 0 13 1 1566.7712 P13639;Q8TA90;B4DPU3;Q6PK56 P13639 560 572 EEF2 Elongation factor 2 yes no 3 0.00057746 84.821 4 0.61686 0.75886 8.2589 4 Linear 0.61686 0.75886 8.2589 4 0 Linear NaN NaN NaN 0 0 Median 91091000 59518000 31574000 91091000 59518000 31574000 0 0 0 1752 1264 1797 6523;6524;6525;6526 9874;9875;9876;9877;9878;9879 9877 6 DLEEFFSTVGK RTVFCMQLAARIRPRDLEEFFSTVGKVRDV IRPRDLEEFFSTVGKVRDVRMISDRNSRRS R D L G K V 0 0 0 1 0 0 2 1 0 0 1 1 0 2 0 1 1 0 0 1 0 0 11 0 1270.6081 B4DRA0;B4DLM0;B3KWX7;Q68DD9;B4E1M7;Q14498;H0Y4X3;B7Z4L7;Q6N037;E1P5S2;Q7Z3L0;Q6MZY7;G3XAC6;A0A0U1RQH7;Q5QP23;Q5QP22 B4DRA0 146 156 DKFZp781C0423;RBM39;DKFZp686A11192;RNPC2;DKFZp781I1140;DKFZp686C17209 RNA-binding protein 39 yes no 2 0.00012458 129.38 3 2 0.49318 0.62936 41.795 5 Median 0.49239 0.62552 3.8357 3 0 Plateau 0.91112 1.307 0.3265 2 0 Median 52086000 31540000 20546000 36671000 24103000 12568000 15415000 7437100 7977900 1753 786 1798 6527;6528;6529;6530;6531 9880;9881;9882;9883;9884;9885;9886;9887 9880 8 DLEGENIEIVFAKPPDQK ERDGAVKAMEEMNGKDLEGENIEIVFAKPP GENIEIVFAKPPDQKKKKKK__________ K D L Q K K 1 0 1 2 0 1 3 1 0 2 1 2 0 1 2 0 0 0 0 1 0 0 18 1 2041.0368 Q05CK9;Q59GL1;B2R8Z8;O60506;B7Z645;B7Z213 Q05CK9 431 448 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 3 0.016155 37.698 2 0.68698 0.83443 8.7978 2 Median 0.68698 0.83443 8.7978 2 0 Median NaN NaN NaN 0 0 Median 6399500 4015600 2383800 6399500 4015600 2383800 0 0 0 1754 718 1799 6532;6533 9888;9889;9890 9888 3 DLEGLSQR GCLETAEEVKRKLQKDLEGLSQRHEEKVAA VKRKLQKDLEGLSQRHEEKVAAYDKLEKTK K D L Q R H 0 1 0 1 0 1 1 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 8 0 916.46141 A0A024R1N1;P35579;A0A0U4BW16 A0A024R1N1 1393 1400 MYH9 Myosin-9 no no 2 0.0084712 104.21 4 0.93364 1.2603 3.2374 4 Median 0.93364 1.2603 3.2374 4 0 Median NaN NaN NaN 0 0 Median 104060000 52430000 51631000 104060000 52430000 51631000 0 0 0 1755 61;490 1800 6534;6535;6536;6537 9891;9892;9893;9894;9895;9896 9892 6 DLEGLSQRHEEK GCLETAEEVKRKLQKDLEGLSQRHEEKVAA LQKDLEGLSQRHEEKVAAYDKLEKTKTRLQ K D L E K V 0 1 0 1 0 1 3 1 1 0 2 1 0 0 0 1 0 0 0 0 0 0 12 1 1439.7005 A0A024R1N1;P35579;A0A0U4BW16 A0A024R1N1 1393 1404 MYH9 Myosin-9 no no 2;3 4.382E-11 147.62 3 1.3485 1.7938 21.315 2 Median 1.3485 1.7938 21.315 2 0 Median NaN NaN NaN 0 0 Median 27790000 14955000 12835000 27790000 14955000 12835000 0 0 0 1756 61;490 1801 6538;6539;6540 9897;9898;9899;9900 9897 4 DLELEMGDDYILDLQK KKRMETEESRKKRERDLELEMGDDYILDLQ LELEMGDDYILDLQKYWDLMNLSEKHDKIP R D L Q K Y 0 0 0 4 0 1 2 1 0 1 4 1 1 0 0 0 0 0 1 0 0 0 16 0 1908.9027 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;B4DHR2;O60747 Q53GS0 400 415 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 3.123E-18 153.38 5 2 0.75126 1.038 9.1672 6 Median 0.82171 1.038 10.999 4 0 Median 0.65815 1.0448 7.4608 2 0 Median 225510000 127530000 97981000 25524000 14940000 10585000 199990000 112590000 87396000 1757 975 1802;1803 6541;6542;6543;6544;6545;6546;6547 9901;9902;9903;9904;9905;9906;9907;9908;9909;9910 9902 348 10 DLENLGLTHLIGSPFLR PESTVYDDYKFVTKKDLENLGLTHLIGSPF ENLGLTHLIGSPFLRAYMHGFFMDIRLYHK K D L L R A 0 1 1 1 0 0 1 2 1 1 5 0 0 1 1 1 1 0 0 0 0 0 17 0 1894.0312 Q9BSC4;B4DS83 Q9BSC4 380 396 NOL10 Nucleolar protein 10 yes no 3 1.6377E-25 123.97 4 1 0.81472 1.1095 4.4809 5 Median 0.82012 1.122 4.392 4 0 Median 0.71248 1.0613 NaN 1 0 Median 306970000 162470000 144500000 291600000 153460000 138140000 15377000 9016900 6359700 1758 1710 1804 6548;6549;6550;6551;6552 9911;9912;9913;9914;9915;9916;9917;9918;9919;9920 9916 10 DLEQGDVSETIR LFSRIFNCNPDDMARDLEQGDVSETIRVFF MARDLEQGDVSETIRVFFEQSKSFPPAAKS R D L I R V 0 1 0 2 0 1 2 1 0 1 1 0 0 0 0 1 1 0 0 1 0 0 12 0 1360.647 P49916;B7Z6I3;K7ERZ5;K7EQB6 P49916 344 355 LIG3 DNA ligase 3;DNA ligase yes no 2 3.5475E-05 90.827 1 2 0.91309 1.2614 NaN 1 Median NaN NaN NaN 0 0 Median 0.91309 1.2614 NaN 1 0 Median 15304000 10759000 4545800 0 0 0 15304000 10759000 4545800 1759 1356 1805 6553;6554;6555 9921;9922;9923;9924 9921 4 DLESLFHR KKREGELTVAQGRVKDLESLFHRSEVELAA VAQGRVKDLESLFHRSEVELAAALSDKRGL K D L H R S 0 1 0 1 0 0 1 0 1 0 2 0 0 1 0 1 0 0 0 0 0 0 8 0 1015.5087 Q03252 Q03252 151 158 LMNB2 Lamin-B2 yes yes 2 0.0069459 81.784 1 0.95415 1.2701 NaN 1 Median 0.95415 1.2701 NaN 1 0 Median NaN NaN NaN 0 0 Median 7100600 3766600 3334000 7100600 3766600 3334000 0 0 0 1760 1440 1806 6556 9925;9926 9925 2 DLETDEVEEFLENK HCQKTDLKLSLLDQRDLETDEVEEFLENKN RDLETDEVEEFLENKNVQTPQCKLRRYQGN R D L N K N 0 0 1 2 0 0 5 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 14 0 1708.7679 A8K4Q6;O14867;C9JMP6;C9IYR0 A8K4Q6 164 177 BACH1 Transcription regulator protein BACH1 yes no 2 1.5028E-09 145.23 3 1 0.99249 1.3045 15.944 3 Median 0.99249 1.3045 15.944 3 0 Median NaN NaN NaN 0 0 Median 16837000 5073800 11764000 10316000 5073800 5242600 6520900 0 6520900 1761 607 1807 6557;6558;6559;6560 9927;9928;9929;9930;9931;9932;9933 9929 7 DLEVWAPPSRMMGIPGAK D L A K 2 1 0 1 0 0 1 2 0 1 1 1 2 0 3 1 0 1 0 1 0 0 18 1 1953.9805 REV__A0A059V6Y7 yes no 2 0.05196 75.739 1 0.74997 0.99254 NaN 1 Median 0.74997 0.99254 NaN 1 0 Median NaN NaN NaN 0 0 Median 48802000 28193000 20609000 48802000 28193000 20609000 0 0 0 + 1762 1837 1808 6561 9934 9934 1 DLEWVER NDVNGLKQCLAEFKRDLEWVERLDVTLGPV QCLAEFKRDLEWVERLDVTLGPVPEIGGSE R D L E R L 0 1 0 1 0 0 2 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 7 0 945.4556 Q6IB29;H7C2Q8;Q99848;B4DHA6;B4DRX8 Q6IB29 63 69 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 0.034671 58.604 2 0.64054 0.89283 1.3221 2 Median NaN NaN NaN 0 0 Median 0.64054 0.89283 1.3221 2 0 Median 12004000 7028400 4975700 0 0 0 12004000 7028400 4975700 1763 1123 1809 6562;6563 9935;9936 9936 2 DLFDLNSSEEDDTEGFSER RKMADRKDEDRKQFKDLFDLNSSEEDDTEG LNSSEEDDTEGFSERGILRPLSTRHGVEDD K D L E R G 0 1 1 4 0 0 4 1 0 0 2 0 0 2 0 3 1 0 0 0 0 0 19 0 2203.9029 Q9Y3T9;Q9H9J5;Q8NAK7 Q9Y3T9 666 684 NOC2L Nucleolar complex protein 2 homolog yes no 2 1.9353E-07 125.53 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3397800 3397800 0 3397800 3397800 0 0 0 0 1764 1820 1810 6564;6565 9937;9938;9939 9938 3 DLFDPIIEDR VGCVAGDEESYEVFKDLFDPIIEDRHGGYK YEVFKDLFDPIIEDRHGGYKPSDEHKTDLN K D L D R H 0 1 0 3 0 0 1 0 0 2 1 0 0 1 1 0 0 0 0 0 0 0 10 0 1231.6085 V9HWH2;V9HW77;A0A0S2Z471;P12277;B4DP56;G3V4N7;G3V461 V9HWH2 87 96 HEL-S-29;HEL-211;CKB Creatine kinase B-type yes no 2 0.022391 43.308 1 0.86854 1.1805 NaN 1 Median 0.86854 1.1805 NaN 1 0 Median NaN NaN NaN 0 0 Median 3555300 2097500 1457700 3555300 2097500 1457700 0 0 0 1765 460 1811 6566 9940 9940 1 DLFLEHAHNLADNVQSISTENTTADGDNAGQ EAKIKLLTKELSVLKDLFLEHAHNLADNVQ ISTENTTADGDNAGQ_______________ K D L G Q - 4 0 4 4 0 2 2 2 2 1 3 0 0 1 0 2 3 0 0 1 0 0 31 0 3296.4818 P53567 P53567 120 150 CEBPG CCAAT/enhancer-binding protein gamma yes yes 3 3.5464E-12 89.882 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14443000 0 0 14443000 0 0 0 0 0 1766 1368 1812 6567;6568 9941;9942;9943 9943 3 DLFNVDAFK DSFDEMNAELQSKLKDLFNVDAFKLESLEA LQSKLKDLFNVDAFKLESLEAKNRALNEQI K D L F K L 1 0 1 2 0 0 0 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 9 0 1067.5288 A8K031;O14777;Q05DQ6 A8K031 256 264 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 0.010718 74.301 3 0.50572 0.66621 13.721 3 Median 0.50572 0.66621 13.721 3 0 Median NaN NaN NaN 0 0 Median 14341000 7950100 6391100 14341000 7950100 6391100 0 0 0 1767 574 1813 6569;6570;6571 9944;9945;9946;9947;9948;9949 9945 6 DLFQVAFNR KGVTDHTQRLSIITKDLFQVAFNRVARGML LSIITKDLFQVAFNRVARGMLHQDHITFAM K D L N R V 1 1 1 1 0 1 0 0 0 0 1 0 0 2 0 0 0 0 0 1 0 0 9 0 1108.5665 Q14204 Q14204 3862 3870 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0091075 67.032 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1666100 1666100 0 1666100 1666100 0 0 0 0 1768 1483 1814 6572 9950 9950 1 DLGDLCGPYYPEHCLPK SCLVCCLCQNPANFKDLGDLCGPYYPEHCL GDLCGPYYPEHCLPKKKPKLKEKVRPEGTC K D L P K K 0 0 0 2 2 0 1 2 1 0 3 1 0 0 3 0 0 0 2 0 0 0 17 0 2032.9023 Q7Z5J4 Q7Z5J4 1698 1714 RAI1 Retinoic acid-induced protein 1 yes yes 3 0.00021826 82.59 4 0.73566 0.94565 18.384 3 Median 0.73566 0.94565 18.384 3 0 Median NaN NaN NaN 0 0 Median 18333000 11053000 7280600 18333000 11053000 7280600 0 0 0 1769 1617 1815 6573;6574;6575;6576 9951;9952;9953;9954 9954 4 DLGEELEALK ESERASRNKAEKQKRDLGEELEALKTELED EKQKRDLGEELEALKTELEDTLDSTAAQQE R D L L K T 1 0 0 1 0 0 3 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1115.571 A0A024R1N1;P35579;Q86XU5;Q7Z7R0;A0A0U4BW16 A0A024R1N1 1136 1145 MYH9 Myosin-9 no no 2 4.7885E-05 126.24 4 2 1.0115 1.2862 72.994 5 Median 1.0027 1.2686 4.332 4 0 Median 4.2149 6.3773 NaN 1 0 Median 156550000 74486000 82061000 141800000 72049000 69747000 14751000 2437000 12314000 1770 61;490 1816 6577;6578;6579;6580;6581;6582 9955;9956;9957;9958;9959;9960;9961;9962;9963;9964 9959 10 DLGFNGAPYR EALTKEELEFEVPFRDLGFNGAPYRSTCLL EVPFRDLGFNGAPYRSTCLLQPTSSALVNA R D L Y R S 1 1 1 1 0 0 0 2 0 0 1 0 0 1 1 0 0 0 1 0 0 0 10 0 1108.5302 Q9Y5B9 Q9Y5B9 803 812 SUPT16H FACT complex subunit SPT16 yes yes 2 0.00015042 111.01 3 4 0.83174 1.203 17.029 4 Median 1.0266 1.375 7.0969 2 0 Median 0.67673 1.0449 8.1209 2 0 Median 98311000 51247000 47064000 44953000 15748000 29205000 53359000 35499000 17860000 1771 1829 1817 6583;6584;6585;6586;6587;6588;6589 9965;9966;9967;9968;9969;9970;9971;9972 9968 8 DLGVTDVLCEACDQLGWTKPTK ASQPIVEEEETKTFKDLGVTDVLCEACDQL LCEACDQLGWTKPTKIQIEAIPLALQGRDI K D L T K I 1 0 0 3 2 1 1 2 0 0 3 2 0 0 1 0 3 1 0 2 0 0 22 1 2505.188 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;A4UCU0;F5H1N9;B4DYP6 Q53GJ1 21 42 hCG_27698;DDX47;E4-DBP Probable ATP-dependent RNA helicase DDX47 yes no 3 0.017169 19.693 1 0.37638 0.60044 NaN 1 Median NaN NaN NaN 0 0 Median 0.37638 0.60044 NaN 1 0 Median 11476000 8709500 2766800 0 0 0 11476000 8709500 2766800 1772 249 1818 6590 9973 9973 1 DLGYIYFYQR IYNDQKVCASEKPPKDLGYIYFYQRVAS__ EKPPKDLGYIYFYQRVAS____________ K D L Q R V 0 1 0 1 0 1 0 1 0 1 1 0 0 1 0 0 0 0 3 0 0 0 10 0 1336.6452 A0A140VJZ1;P45974 A0A140VJZ1 846 855 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 0.023082 52.716 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1829700 0 1829700 0 0 0 1829700 0 1829700 1773 505 1819 6591 9974 9974 1 DLGYPFALSK LPDTKFEEEVPRIFKDLGYPFALSKSSMYT PRIFKDLGYPFALSKSSMYTVGAPHTWPHI K D L S K S 1 0 0 1 0 0 0 1 0 0 2 1 0 1 1 1 0 0 1 0 0 0 10 0 1109.5757 A8K031;O14777;Q05DQ6;V9GYM9 A8K031 157 166 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 0.037501 46.158 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2768600 2768600 0 2768600 2768600 0 0 0 0 1774 574 1820 6592 9975 9975 1 DLHTTAFK LERLGRSRWQGELQRDLHTTAFKVDAGKLH WQGELQRDLHTTAFKVDAGKLHYHRKILNK R D L F K V 1 0 0 1 0 0 0 0 1 0 1 1 0 1 0 0 2 0 0 0 0 0 8 0 931.47633 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 196 203 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.0018191 85.265 1 2 0.93771 1.3432 10.442 2 Median NaN NaN NaN 0 0 Median 0.93771 1.3432 10.442 2 0 Median 21840000 16064000 5776400 10294000 10294000 0 11546000 5769800 5776400 1775 1457 1821 6593;6594;6595 9976;9977;9978 9976 3 DLIDEGHAATQLVNQLHDVVVENNLSDK ACQSGSFDKLEAVVKDLIDEGHAATQLVNQ NQLHDVVVENNLSDKQKSIITEKLAEVDKC K D L D K Q 2 0 3 4 0 2 2 1 2 1 4 1 0 0 0 1 1 0 0 4 0 0 28 0 3085.5316 P35249;H7C1P0 P35249 295 322 RFC4 Replication factor C subunit 4 yes no 3 5.2721E-21 116.92 2 0.37426 0.47939 9.1853 2 Median 0.37426 0.47939 9.1853 2 0 Median NaN NaN NaN 0 0 Median 6412000 4060500 2351500 6412000 4060500 2351500 0 0 0 1776 1317 1822 6596;6597 9979;9980;9981;9982 9981 4 DLIDNSFNR LALGAVIASSKKAKRDLIDNSFNRYTFNED SKKAKRDLIDNSFNRYTFNEDEGELPEWFV R D L N R Y 0 1 2 2 0 0 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 9 0 1092.52 Q8IY81;B4DKU3 Q8IY81 683 691 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 6.3894E-05 127.56 4 1 0.75839 1.0123 6.0594 4 Median 0.75839 1.0123 6.0594 4 0 Median NaN NaN NaN 0 0 Median 71156000 43854000 27301000 60118000 32816000 27301000 11038000 11038000 0 1777 1628 1823 6598;6599;6600;6601;6602 9983;9984;9985;9986;9987 9984 5 DLIDYVR AEASLPEKKGNTLSRDLIDYVRYMVENHGE KKGNTLSRDLIDYVRYMVENHGEDYKAMAR R D L V R Y 0 1 0 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 7 0 892.46543 Q9Y3C1;D6RIC3;A0A0C4DGU5;A0A087X2G6;Q9P0T8 Q9Y3C1 114 120 NOP16 Nucleolar protein 16 yes no 2 0.027056 95.793 3 1 0.81793 1.0874 17.9 4 Median 0.84379 1.1207 5.0988 3 0 Median 0.51463 0.78614 NaN 1 0 Median 68929000 40254000 28676000 51038000 28798000 22240000 17891000 11456000 6435700 1778 1817 1824 6603;6604;6605;6606 9988;9989;9990;9991 9990 4 DLIGIDNLVVPGR MIKMENFQKLHELKKDLIGIDNLVVPGRPG KKDLIGIDNLVVPGRPGSFSLIRTPHLGQA K D L G R P 0 1 1 2 0 0 0 2 0 2 2 0 0 0 1 0 0 0 0 2 0 0 13 0 1379.7773 C9JME2;Q9Y4F1;H0Y783;M0QXT1 C9JME2 746 758 FARP1 FERM, RhoGEF and pleckstrin domain-containing protein 1 yes no 2 0.016076 63.283 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1779 941 1825 6607 9992 9992 1 DLIGVQNLLK IREKEPIAASTNRGKDLIGVQNLLKKHQAL TNRGKDLIGVQNLLKKHQALQAEIAGHEPR K D L L K K 0 0 1 1 0 1 0 1 0 1 3 1 0 0 0 0 0 0 0 1 0 0 10 0 1111.6601 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 815 824 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 2.1701E-08 153.04 4 0.89403 1.1262 5.2396 4 Median 0.89403 1.1262 5.2396 4 0 Median NaN NaN NaN 0 0 Median 65068000 34532000 30537000 65068000 34532000 30537000 0 0 0 1780 1476 1826 6608;6609;6610;6611 9993;9994;9995;9996;9997;9998;9999;10000 9994 8 DLIHGAPVGK VLGEKTSNLRVKTLRDLIHGAPVGKPAANR VKTLRDLIHGAPVGKPAANRAFVSMVYSEE R D L G K P 1 0 0 1 0 0 0 2 1 1 1 1 0 0 1 0 0 0 0 1 0 0 10 0 1005.5607 Q14683;G8JLG1;Q6P2R1;Q6MZR8;A8K7A6;B7Z709;Q68EN4;H0Y7K8;Q5H934;Q7Z4C6 Q14683 63 72 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0011692 82.426 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1781 1492 1827 6612 10001 10001 1 DLILADYGK TLTDEEWIKVEVQLKDLILADYGKKNNVNV VEVQLKDLILADYGKKNNVNVASLTQSEIR K D L G K K 1 0 0 2 0 0 0 1 0 1 2 1 0 0 0 0 0 0 1 0 0 0 9 0 1006.5335 Q6P2Q9;B4DK16;Q53GM6 Q6P2Q9 1985 1993 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.013614 57.96 2 0.55114 0.68876 2.9211 2 Median 0.55114 0.68876 2.9211 2 0 Median NaN NaN NaN 0 0 Median 30032000 19856000 10175000 30032000 19856000 10175000 0 0 0 1782 1592 1828 6613;6614 10002;10003;10004 10003 3 DLILPTIQK SCAPLLRYLSHSEFKDLILPTIQKSLLRSP SHSEFKDLILPTIQKSLLRSPENVIETISS K D L Q K S 0 0 0 1 0 1 0 0 0 2 2 1 0 0 1 0 1 0 0 0 0 0 9 0 1039.6277 E1NZA1;Q92616;A0A024RBS1;B4DM32 E1NZA1 260 268 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.02621 48.036 1 0.41853 0.54773 NaN 1 Median 0.41853 0.54773 NaN 1 0 Median NaN NaN NaN 0 0 Median 5088400 3536800 1551600 5088400 3536800 1551600 0 0 0 1783 1000 1829 6615 10005 10005 1 DLINLAK DGLVYAVEFSHRSGRDLINLAKKRTNIIPV EFSHRSGRDLINLAKKRTNIIPVIEDARHP R D L A K K 1 0 1 1 0 0 0 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 785.4647 Q96BS4;P22087;M0R299;M0QXL5;M0R2Q4;B4DLD4;M0R0P1 Q96BS4 138 144 FBL rRNA 2-O-methyltransferase fibrillarin yes no 1;2 0.024246 104.21 3 3 0.60414 0.86603 7.8995 6 Median 0.71393 0.93582 2.2052 3 0 Median 0.51426 0.82438 3.5694 3 0 Median 593800000 368880000 224920000 263920000 153440000 110480000 329890000 215450000 114440000 1784 1288 1830 6616;6617;6618;6619;6620;6621 10006;10007;10008;10009;10010;10011;10012;10013;10014 10007 9 DLIQMLVQR EKIQGKITIENRSKKDLIQMLVQRGYESDP ENRSKKDLIQMLVQRGYESDPVKAWKEAQE K D L Q R G 0 1 0 1 0 2 0 0 0 1 2 0 1 0 0 0 0 0 0 1 0 0 9 0 1114.6169 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80;Q6W6M6 Q71UH4 1065 1073 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.0019388 104.44 4 4 0.5599 0.85103 15.322 6 Median 0.59311 0.7947 19.304 2 0 Median 0.5599 0.85103 16.338 4 0 Median 93530000 62695000 30835000 7873100 6165900 1707200 85657000 56529000 29128000 1785 1437 1831;1832 6622;6623;6624;6625;6626;6627;6628;6629 10015;10016;10017;10018;10019;10020;10021;10022;10023;10024;10025;10026;10027 10020 641 13 DLITQATLLYTMADK YVQQARKEKNKDNKKDLITQATLLYTMADK DLITQATLLYTMADKIIMYDQNHLLGRACF K D L D K I 2 0 0 2 0 1 0 0 0 1 3 1 1 0 0 0 3 0 1 0 0 0 15 0 1695.8753 A8K6X9;Q6PD62;H0YCE8 A8K6X9 108 122 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2 0.0016998 90.731 2 0.65476 0.84021 NaN 1 Median 0.65476 0.84021 NaN 1 0 Median NaN NaN NaN 0 0 Median 3371300 2055200 1316100 3371300 2055200 1316100 0 0 0 1786 629 1833 6630;6631 10028;10029 10029 2 DLKPENLLLASK LESVNHIHQHDIVHRDLKPENLLLASKCKG VHRDLKPENLLLASKCKGAAVKLADFGLAI R D L S K C 1 0 1 1 0 0 1 0 0 0 4 2 0 0 1 1 0 0 0 0 0 0 12 1 1339.7711 Q5SWX3;A8K6N9;A0A0A0MS52;A0A0A0MT11;Q13555;Q8WU40;B3KY86;B3KTH7;D6RHX9;E9PBE8;E7EQE4;B7Z1Z6;Q4G1A8;H7BXS4;Q8IWE0;Q7LDD5;A8K161;D3DVK8;Q53H78;A4D2J9;Q9UQM7;Q13554 Q5SWX3 136 147 CAMK2G;CAMK2A;CAMK2B;CAMK2D Calcium/calmodulin-dependent protein kinase type II subunit gamma;Calcium/calmodulin-dependent protein kinase type II subunit alpha;Calcium/calmodulin-dependent protein kinase type II subunit beta no no 2 0.037021 79.036 1 0.59979 0.72393 NaN 1 Median 0.59979 0.72393 NaN 1 0 Median NaN NaN NaN 0 0 Median 3176800 1810000 1366700 3176800 1810000 1366700 0 0 0 1787 393 1834 6632 10030 10030 1 DLKPQNLLIDDK LQGIVFCHSRRVLHRDLKPQNLLIDDKGTI LHRDLKPQNLLIDDKGTIKLADFGLARAFG R D L D K G 0 0 1 3 0 1 0 0 0 1 3 2 0 0 1 0 0 0 0 0 0 0 12 1 1410.7718 A0A024QZP7;P06493;Q5H9N4;A0A087WZZ9;I6L9I5;E5RIU6 A0A024QZP7 128 139 CDC2;CDK1;DKFZp686L20222 Cyclin-dependent kinase 1 yes no 2 7.3438E-11 152.96 4 0.66311 0.81411 9.6384 4 Median 0.66311 0.81411 9.6384 4 0 Median NaN NaN NaN 0 0 Median 191120000 116860000 74258000 191120000 116860000 74258000 0 0 0 1788 18 1835 6633;6634;6635;6636 10031;10032;10033;10034;10035;10036 10032 6 DLLAAAK TEIQHKSIRPLLEGRDLLAAAKTGSGKTLA IRPLLEGRDLLAAAKTGSGKTLAFLIPAVE R D L A K T 3 0 0 1 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 7 0 700.41194 Q4ZG72;A0A024RAH8;Q9NVP1 Q4ZG72 94 100 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 0.040375 54.525 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1789 242 1836 6637 10037 10037 1 DLLADLIGCQR EREKVTVMSTINPTKDLLADLIGCQRLPED NPTKDLLADLIGCQRLPEDQRKKVHQLKDL K D L Q R L 1 1 0 2 1 1 0 1 0 1 3 0 0 0 0 0 0 0 0 0 0 0 11 0 1272.6496 B4DZQ5;A0A024QZY5;Q13523;H0YDJ3;D3DWH5 B4DZQ5 940 950 PRPF4B;hCG_1820375 Serine/threonine-protein kinase PRP4 homolog yes no 2 0.015446 93.649 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 792730 0 792730 792730 0 792730 0 0 0 1790 24 1837 6638 10038 10038 1 DLLALFNSFKPK RLAVCNMDWDRLKAKDLLALFNSFKPKGGV KAKDLLALFNSFKPKGGVIFSVKIYPSEFG K D L P K G 1 0 1 1 0 0 0 0 0 0 3 2 0 2 1 1 0 0 0 0 0 0 12 1 1391.7813 Q9H501;Q05C10;A0JLU5;A0A087WX71 Q9H501 364 375 ESF1 ESF1 homolog yes no 2 6.1775E-08 111.27 3 0.97462 1.1798 8.5686 3 Median 0.97462 1.1798 8.5686 3 0 Median NaN NaN NaN 0 0 Median 28610000 14494000 14115000 28610000 14494000 14115000 0 0 0 1791 1734 1838 6639;6640;6641 10039;10040;10041;10042;10043;10044 10044 6 DLLAVVFYGTEK CIQSVYISKIISSDRDLLAVVFYGTEKDKN SDRDLLAVVFYGTEKDKNSVNFKNIYVLQE R D L E K D 1 0 0 1 0 0 1 1 0 0 2 1 0 1 0 0 1 0 1 2 0 0 12 0 1353.718 A0A024R1N4;P12956;B1AHC9;B2RDN9 A0A024R1N4 81 92 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.0015851 84.198 3 0.47893 0.62304 11.21 2 Median 0.47893 0.62304 11.21 2 0 Median NaN NaN NaN 0 0 Median 6791000 4041800 2749200 6791000 4041800 2749200 0 0 0 1792 62 1839 6642;6643;6644 10045;10046;10047 10047 3 DLLDLLVEAK LATSFFNERNINITKDLLDLLVEAKQEVPS INITKDLLDLLVEAKQEVPSWLENMAYEHH K D L A K Q 1 0 0 2 0 0 1 0 0 0 4 1 0 0 0 0 0 0 0 1 0 0 10 0 1127.6438 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1;A0A024R9A4;O15523;B4DLU5;B4E132;A0A0J9YVQ7;A0A087WVZ1 A0A0D9SFB3 555 564 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 4.2621E-08 131.44 4 0.50233 0.61383 6.2603 2 Median 0.50233 0.61383 6.2603 2 0 Median NaN NaN NaN 0 0 Median 55479000 37177000 18302000 55479000 37177000 18302000 0 0 0 1793 432 1840 6645;6646;6647;6648 10048;10049;10050;10051;10052;10053 10050 6 DLLFILTAK KIAVMELFRPKGESKDLLFILTAKYNACIL PKGESKDLLFILTAKYNACILEYKQSGESI K D L A K Y 1 0 0 1 0 0 0 0 0 1 3 1 0 1 0 0 1 0 0 0 0 0 9 0 1032.6219 Q16531;F5GY55;B7Z2A1;B4DZP5;F5H2L3;F5GWI0;F5GZY8;F5GYG8 Q16531 75 83 DDB1 DNA damage-binding protein 1 yes no 1;2 0.0018487 108.74 5 0.84776 1.0871 17.321 5 Median 0.84776 1.0871 17.321 5 0 Median NaN NaN NaN 0 0 Median 93800000 49302000 44498000 93800000 49302000 44498000 0 0 0 1794 1520 1841 6649;6650;6651;6652;6653 10054;10055;10056;10057;10058;10059;10060;10061 10058 7 DLLGYLNGEASTSASIDR AATENIPVVRRPDRKDLLGYLNGEASTSAS GYLNGEASTSASIDRSAPLEIGLQRSTQVK K D L D R S 2 1 1 2 0 0 1 2 0 1 3 0 0 0 0 3 1 0 1 0 0 0 18 0 1880.9116 Q6P1J9;A0A1B0GUB2;B4DV47 Q6P1J9 93 110 CDC73 Parafibromin yes no 2 1.7711E-31 177.21 4 0.77976 1.0501 14.393 4 Median 0.77976 1.0501 14.393 4 0 Median NaN NaN NaN 0 0 Median 23650000 13020000 10630000 23650000 13020000 10630000 0 0 0 1795 1590 1842 6654;6655;6656;6657 10062;10063;10064;10065;10066;10067;10068 10062 7 DLLHLPELFSPGMLVR TKKLNEQVTQEQPLKDLLHLPELFSPGMLV LLHLPELFSPGMLVRCVVSSLGITDRGKKS K D L V R C 0 1 0 1 0 0 1 1 1 0 5 0 1 1 2 1 0 0 0 1 0 0 16 0 1835.9968 Q14690;B4DH82;B4DES7 Q14690 135 150 PDCD11 Protein RRP5 homolog yes no 3 0.0031636 62.357 1 0.58959 0.8345 NaN 1 Median 0.58959 0.8345 NaN 1 0 Median NaN NaN NaN 0 0 Median 2777500 1714000 1063500 2777500 1714000 1063500 0 0 0 1796 1494 1843 6658 10069 10069 671 1 DLLHPSLEEEK LKLIVIICFFVQLARDLLHPSLEEEKKKHK QLARDLLHPSLEEEKKKHKKKRLVQSPNSY R D L E K K 0 0 0 1 0 0 3 0 1 0 3 1 0 0 1 1 0 0 0 0 0 0 11 0 1308.6561 H0YMV8;Q71UM5;C9JLI6 H0YMV8 22 32 RPS27L 40S ribosomal protein S27;40S ribosomal protein S27-like yes no 2 3.2037E-17 156.48 4 0.86344 1.1231 5.7598 4 Median 0.86344 1.1231 5.7598 4 0 Median NaN NaN NaN 0 0 Median 373110000 199720000 173390000 373110000 199720000 173390000 0 0 0 1797 1103 1844 6659;6660;6661;6662 10070;10071;10072;10073;10074 10074 5 DLLHPSPEEEK ______________________________ PLAKDLLHPSPEEEKRKHKKKRLVQSPNSY K D L E K R 0 0 0 1 0 0 3 0 1 0 2 1 0 0 2 1 0 0 0 0 0 0 11 0 1292.6248 P42677;Q5T4L4 P42677 6 16 RPS27 40S ribosomal protein S27 yes no 2 2.5811E-12 160.75 6 1 0.87112 1.1563 15.1 6 Median 0.87122 1.1611 2.5849 5 0 Median 0.49909 0.79875 NaN 1 0 Median 2170900000 1175800000 995130000 1854500000 964040000 890470000 316390000 211730000 104660000 1798 1337 1845 6663;6664;6665;6666;6667;6668;6669 10075;10076;10077;10078;10079;10080;10081;10082;10083;10084;10085;10086;10087;10088;10089;10090 10081 16 DLLHPSPEEEKR ______________________________ LAKDLLHPSPEEEKRKHKKKRLVQSPNSYF K D L K R K 0 1 0 1 0 0 3 0 1 0 2 1 0 0 2 1 0 0 0 0 0 0 12 1 1448.726 P42677;Q5T4L4 P42677 6 17 RPS27 40S ribosomal protein S27 yes no 3 0.0012184 51.359 2 0.54454 0.83784 5.1107 2 Median NaN NaN NaN 0 0 Median 0.54454 0.83784 5.1107 2 0 Median 12577000 7433300 5144100 0 0 0 12577000 7433300 5144100 1799 1337 1846 6670;6671 10091;10092;10093;10094 10093 4 DLLPCFPEGLVK SKEATTTLHMLTLLKDLLPCFPEGLVKSCS LLKDLLPCFPEGLVKSCSETLLRVMTLSHV K D L V K S 0 0 0 1 1 0 1 1 0 0 3 1 0 1 2 0 0 0 0 1 0 0 12 0 1386.7217 B3KMR5;Q5JTH9 B3KMR5 313 324 RRP12 RRP12-like protein yes no 2 0.001803 84.817 4 1 0.91297 1.1328 8.695 5 Median 0.91586 1.144 2.5781 4 0 Median 0.68499 0.94102 NaN 1 0 Median 55816000 29548000 26268000 51824000 27616000 24208000 3992500 1932700 2059800 1800 756 1847 6672;6673;6674;6675;6676 10095;10096;10097;10098;10099;10100;10101;10102 10098 8 DLLPHPVLGRPPAPLGAPQGAVYTDIPAPEAAR SMDGLGSSCPASHCRDLLPHPVLGRPPAPL QGAVYTDIPAPEAARQCAPPPAPPTSSSAT R D L A R Q 6 2 0 2 0 1 1 3 1 1 4 0 0 0 8 0 1 0 1 2 0 0 33 1 3355.8041 P31276 P31276 71 103 HOXC13 Homeobox protein Hox-C13 yes yes 4 3.162E-05 42.181 3 2 0.32919 0.44529 25.639 4 Median 0.37439 0.49553 17.908 3 0 Median 0.2188 0.31749 NaN 1 0 Median 44344000 33838000 10506000 27906000 19776000 8130300 16438000 14062000 2376000 1801 1308 1848 6677;6678;6679;6680;6681 10103;10104;10105;10106;10107;10108;10109;10110 10105 8 DLLPSDMAVALLEAQAGTGHIIDPATSAR EEAGQKLSIYNALKKDLLPSDMAVALLEAQ QAGTGHIIDPATSARLTVDEAVRAGLVGPE K D L A R L 6 1 0 3 0 1 1 2 1 2 4 0 1 0 2 2 2 0 0 1 0 0 29 0 2932.4964 Q15149;D3DWL0 Q15149 3184 3212 PLEC;PLEC1 Plectin yes no 3 6.2146E-05 62.717 1 0.78934 1.0605 NaN 1 Median 0.78934 1.0605 NaN 1 0 Median NaN NaN NaN 0 0 Median 3212900 1736600 1476400 3212900 1736600 1476400 0 0 0 1802 1507 1849 6682 10111;10112 10111 689 2 DLLPVAVEILPVSEK VASSETSSLSLVPPKDLLPVAVEILPVSEK DLLPVAVEILPVSEKNLSLTPSAPSLTLEA K D L E K N 1 0 0 1 0 0 2 0 0 1 3 1 0 0 2 1 0 0 0 3 0 0 15 0 1620.9338 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2 A0A0A0MS59 2325 2339 SRCAP Helicase SRCAP yes no 2 2.5062E-05 79.633 3 0.52766 0.67661 15.734 3 Median 0.52766 0.67661 15.734 3 0 Median NaN NaN NaN 0 0 Median 13758000 9570500 4187400 13758000 9570500 4187400 0 0 0 1803 394 1850 6683;6684;6685 10113;10114;10115;10116;10117 10117 5 DLLQADQLGSLK LKDGIQLSEYLPEVKDLLQADQLGSLKSNP EVKDLLQADQLGSLKSNPYFEFVLKANYEY K D L L K S 1 0 0 2 0 2 0 1 0 0 4 1 0 0 0 1 0 0 0 0 0 0 12 0 1299.7034 Q8WUM0;B4E206;A0A024R3R6;B4E3T7 Q8WUM0 1124 1135 NUP133 Nuclear pore complex protein Nup133 yes no 2 0.0075486 80.763 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5689900 5689900 0 5689900 5689900 0 0 0 0 1804 1666 1851 6686;6687 10118;10119 10119 2 DLLQDLK IPAATTSLITMLNAKDLLQDLKFVPSDEKK LITMLNAKDLLQDLKFVPSDEKKKQGCQRE K D L L K F 0 0 0 2 0 1 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 843.47018 Q6P1J9;A0A1B0GUB2;A0A0S2Z5M9 Q6P1J9 379 385 CDC73 Parafibromin yes no 2 0.0097962 117.93 4 0.67003 0.86457 17.19 4 Median 0.67003 0.86457 17.19 4 0 Median NaN NaN NaN 0 0 Median 45954000 26336000 19618000 45954000 26336000 19618000 0 0 0 1805 1590 1852 6688;6689;6690;6691 10120;10121;10122;10123;10124;10125 10120 6 DLLTPPADKPGQDNR LDLRWAVGIKDPQIRDLLTPPADKPGQDNR DLLTPPADKPGQDNRSKLRNMTDFRLAGLD R D L N R S 1 1 1 3 0 1 0 1 0 0 2 1 0 0 3 0 1 0 0 0 0 0 15 1 1635.8216 I3VM54;I3VM53;Q9Y2K7 I3VM54 1004 1018 KDM2A Lysine-specific demethylase 2A yes no 3 9.5795E-06 54.501 2 0.44108 0.67417 2.5352 2 Median NaN NaN NaN 0 0 Median 0.44108 0.67417 2.5352 2 0 Median 18334000 12024000 6310500 0 0 0 18334000 12024000 6310500 1806 1128 1853 6692;6693 10126;10127 10126 1 DLLVLLNEILEQVK TKALSSLELSSHLAKDLLVLLNEILEQVKD KDLLVLLNEILEQVKDRTCLRALEKIKIQL K D L V K D 0 0 1 1 0 1 2 0 0 1 5 1 0 0 0 0 0 0 0 2 0 0 14 0 1637.9604 Q9BPX3;Q6NUR1 Q9BPX3 866 879 NCAPG Condensin complex subunit 3 yes no 2 7.0782E-05 107.09 1 0.72069 0.91443 NaN 1 Median 0.72069 0.91443 NaN 1 0 Median NaN NaN NaN 0 0 Median 3748800 2137100 1611700 3748800 2137100 1611700 0 0 0 1807 1706 1854 6694 10128 10128 1 DLNILGR LFREHCVCVQGNYIKDLNILGRDLSKTIII CVQGNYIKDLNILGRDLSKTIIIDNSPQAF K D L G R D 0 1 1 1 0 0 0 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 7 0 799.4552 A0A024R5Q8;Q05D32 A0A024R5Q8 389 395 CTDSPL2 CTD small phosphatase-like protein 2 yes no 2 0.049735 50.966 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1808 149 1855 6695 10129 10129 1 DLNQEIEK SENEKNRNQEDNKVKDLNQEIEKLKTQIKH QEDNKVKDLNQEIEKLKTQIKHFESLEEEL K D L E K L 0 0 1 1 0 1 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 8 0 987.48729 A0A024RAC0;Q86V48 A0A024RAC0 290 297 LUZP1 Leucine zipper protein 1 yes no 2 0.041233 49.097 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1809 238 1856 6696 10130 10130 1 DLNSDMDSILASLK SGKGFYIYQEGVKRKDLNSDMDSILASLKL KDLNSDMDSILASLKLPPKSEVSSDEDIQF K D L L K L 1 0 1 3 0 0 0 0 0 1 3 1 1 0 0 3 0 0 0 0 0 0 14 0 1520.7392 B4DDZ5;H0YFD6;E9KL44;P40939;B4DRH6 E9KL44 647 660 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase no no 2 0.013119 45.077 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1526100 1526100 0 1526100 1526100 0 0 0 0 1810 1020;797 1857 6697 10131 10131 1 DLNSQLEYLR QQYRSAVCKLDSVNKDLNSQLEYLRTPDMR DSVNKDLNSQLEYLRTPDMRKKKQELDEHE K D L L R T 0 1 1 1 0 1 1 0 0 0 3 0 0 0 0 1 0 0 1 0 0 0 10 0 1249.6303 A6NHR9 A6NHR9 1925 1934 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.00045457 85.731 2 1.4158 1.8363 6.4081 2 Median NaN NaN NaN 0 0 Median 1.4158 1.8363 6.4081 2 0 Median 9079100 3107000 5972100 0 0 0 9079100 3107000 5972100 1811 568 1858 6698;6699 10132;10133;10134 10134 3 DLNSYLEDK VDGHSSKNDIHTLLKDLNSYLEDKVYLTGY IHTLLKDLNSYLEDKVYLTGYNFTLADILL K D L D K V 0 0 1 2 0 0 1 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 9 0 1095.5084 H0YAL7;D6RBD7;C9J1V9;O43324 H0YAL7 84 92 EEF1E1;EEF1E1-BLOC1S5 Eukaryotic translation elongation factor 1 epsilon-1 yes no 2 0.015294 59.245 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2475200 2475200 0 2475200 2475200 0 0 0 0 1812 934 1859 6700 10135 10135 1 DLNWIHVQDAEEAWK TLRLCEDQNGNPYVKDLNWIHVQDAEEAWK DLNWIHVQDAEEAWKLLKVGRKNQSFASTH K D L W K L 2 0 1 2 0 1 2 0 1 1 1 1 0 0 0 0 0 2 0 1 0 0 15 0 1852.8744 O95235 O95235 343 357 KIF20A Kinesin-like protein KIF20A yes yes 3 0.0017791 38.093 2 0.42914 0.5914 NaN 1 Median NaN NaN NaN 0 0 Median 0.42914 0.5914 NaN 1 0 Median 7621800 5862500 1759300 0 0 0 7621800 5862500 1759300 1813 1215 1860 6701;6702 10136;10137 10136 2 DLNYCFSGMSDHR GYNDGYGFGSDRFGRDLNYCFSGMSDHRYG GRDLNYCFSGMSDHRYGDGGSTFQSTTGHC R D L H R Y 0 1 1 2 1 0 0 1 1 0 1 0 1 1 0 2 0 0 1 0 0 0 13 0 1600.6399 G8JLB6;P31943;E9PCY7;H0YB39;H0YBG7;Q68DG4;H0YBD7;P55795;B4DFK9;B4DP00 G8JLB6 263 275 HNRNPH1;DKFZp686A15170;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 2 0.00018306 68.536 1 2.6278 3.4871 NaN 1 Median NaN NaN NaN 0 0 Median 2.6278 3.4871 NaN 1 0 Median 4650800 1152700 3498100 0 0 0 4650800 1152700 3498100 1814 1084;1380 1861 6703 10138 10138 385 1 DLPAHLQHDCPK VIPCPNRCPMKLSRRDLPAHLQHDCPKRRL SRRDLPAHLQHDCPKRRLKCEFCGCDFSGE R D L P K R 1 0 0 2 1 1 0 0 2 0 2 1 0 0 2 0 0 0 0 0 0 0 12 0 1429.6772 A0A0C4DFM9;B4DUU9;F6SA91;A0A024QZ59;Q9BUZ4;J9JIG0;C9JJ10;A0A024QZ19;K7EJG7;K7ER49 A0A0C4DFM9 125 136 TRAF4 TNF receptor-associated factor 4 yes no 3 0.0068489 60.301 2 1.2279 1.5622 2.2539 2 Median 1.2279 1.5622 2.2539 2 0 Median NaN NaN NaN 0 0 Median 8409200 4083400 4325800 8409200 4083400 4325800 0 0 0 1815 5 1862 6704;6705 10139;10140 10140 2 DLPDVQELITQVR NEVNSDAGAFKNSLKDLPDVQELITQVRSE LKDLPDVQELITQVRSEKCSLQAAAILDAN K D L V R S 0 1 0 2 0 2 1 0 0 1 2 0 0 0 1 0 1 0 0 2 0 0 13 0 1524.8148 Q9UHB9;B4DVI7;Q96K98;Q96K97 Q9UHB9 509 521 SRP68 Signal recognition particle subunit SRP68 yes no 2 2.7661E-16 166.29 3 1 0.92858 1.2774 83.996 2 Median 0.51768 0.70531 NaN 1 0 Median 1.6656 2.3135 NaN 1 0 Median 23125000 11410000 11715000 13898000 8232400 5665100 9227800 3177700 6050200 1816 1784 1863 6706;6707;6708;6709 10141;10142;10143;10144;10145 10142 5 DLPEHAVLK DYKQRTQKKAEVEGKDLPEHAVLKMKGNFT AEVEGKDLPEHAVLKMKGNFTLPEVAECFD K D L L K M 1 0 0 1 0 0 1 0 1 0 2 1 0 0 1 0 0 0 0 1 0 0 9 0 1020.5604 Q96BA7;B3KX72;B4DLR3;Q00839;Q7Z4Q5 Q96BA7 524 532 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 2 0.0013439 100.02 3 2 0.40031 0.52325 106.4 5 Median 0.38665 0.49677 3.0219 3 0 Median 2.2879 3.5237 1.162 2 0 Median 475160000 327200000 147960000 424460000 311210000 113250000 50700000 15988000 34712000 1817 788 1864 6710;6711;6712;6713;6714 10146;10147;10148;10149;10150;10151;10152;10153 10151 8 DLPERDQFR NQLSRAVRELARRLRDLPERDQFRVRASAA LARRLRDLPERDQFRVRASAALLDKLYALG R D L F R V 0 2 0 2 0 1 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 9 1 1174.5731 Q9NV31 Q9NV31 64 72 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 2 0.023305 69.812 1 0.86466 1.1702 NaN 1 Median 0.86466 1.1702 NaN 1 0 Median NaN NaN NaN 0 0 Median 28879000 15689000 13190000 28879000 15689000 13190000 0 0 0 1818 1762 1865 6715 10154;10155 10155 2 DLPFVEEIK LCKTQKQSTTTLNKKDLPFVEEIKEGECQV TTLNKKDLPFVEEIKEGECQVKKVNKMTSK K D L I K E 0 0 0 1 0 0 2 0 0 1 1 1 0 1 1 0 0 0 0 1 0 0 9 0 1088.5754 Q562F6;B7Z7S9 Q562F6 1055 1063 SGOL2 Shugoshin-like 2 yes no 2 0.007161 91.069 3 0.84483 1.0728 0.77613 3 Median 0.84483 1.0728 0.77613 3 0 Median NaN NaN NaN 0 0 Median 25650000 14927000 10723000 25650000 14927000 10723000 0 0 0 1819 1546 1866 6716;6717;6718 10156;10157;10158;10159;10160 10159 5 DLPLLLFR GLNGAVFRPEVPLRRDLPLLLFRTQTSDPA PEVPLRRDLPLLLFRTQTSDPAMLPTMIGL R D L F R T 0 1 0 1 0 0 0 0 0 0 4 0 0 1 1 0 0 0 0 0 0 0 8 0 985.59605 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2;Q8N5M8;Q9UMY3;Q96RV7;Q96RV6 O43175 462 469 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 2 0.0011161 143.37 4 0.80863 0.92183 10.507 3 Plateau 0.80863 0.92183 10.507 3 0 Plateau NaN NaN NaN 0 0 Median 32514000 18394000 14120000 32514000 18394000 14120000 0 0 0 1820 1182 1867 6719;6720;6721;6722 10161;10162;10163;10164;10165 10161 5 DLPPLLLK SEAVSLLEEVITPRKDLPPLLLKLNERPAE EVITPRKDLPPLLLKLNERPAERLDYLGVS K D L L K L 0 0 0 1 0 0 0 0 0 0 4 1 0 0 2 0 0 0 0 0 0 0 8 0 907.57425 Q9H0A0;A0A087WV29 Q9H0A0 690 697 NAT10 N-acetyltransferase 10 yes no 1 0.027903 94.662 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2087700 0 2087700 2087700 0 2087700 0 0 0 1821 1730 1868 6723 10166 10166 1 DLPSADSVQYR HFFHSLMLYHEHLRKDLPSADSVQYRHLPS HLRKDLPSADSVQYRHLPSRGITQKEQDGL K D L Y R H 1 1 0 2 0 1 0 0 0 0 1 0 0 0 1 2 0 0 1 1 0 0 11 0 1249.5939 Q92621 Q92621 572 582 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.0017242 76.465 2 0.29219 0.41115 NaN 1 Median 0.29219 0.41115 NaN 1 0 Median NaN NaN NaN 0 0 Median 5364100 3631000 1733100 5364100 3631000 1733100 0 0 0 1822 1673 1869 6724;6725 10167;10168;10169 10169 3 DLPVTEAVFSALVTGHAR DIEGASKILGFMKTKDLPVTEAVFSALVTG VTEAVFSALVTGHARAGDMENAENILTVMR K D L A R A 3 1 0 1 0 0 1 1 1 0 2 0 0 1 1 1 2 0 0 3 0 0 18 0 1881.9949 E5KNY5;P42704;B4DSR0;B8ZZ38;A0A0C4DG06;C9JCA9 E5KNY5 227 244 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 3 0.00041111 82.865 3 0.34849 0.47198 11.68 2 Median 0.34849 0.47198 11.68 2 0 Median NaN NaN NaN 0 0 Median 46098000 32224000 13875000 46098000 32224000 13875000 0 0 0 1823 1001 1870 6726;6727;6728 10170;10171;10172;10173;10174 10172 5 DLQANVEHLVQK GADAAYIFEEPFTIRDLQANVEHLVQKMKT TIRDLQANVEHLVQKMKTTVKRGLVLRNEK R D L Q K M 1 0 1 1 0 2 1 0 1 0 2 1 0 0 0 0 0 0 0 2 0 0 12 0 1392.7361 A0A024R0Y5;P08237;Q96I60;A0A0S2Z4I1;B4E162;A0A0S2Z4A8;Q7KYX9 A0A024R0Y5 604 615 PFKM ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type yes no 2 8.3884E-05 135.99 3 0.48448 0.61138 4.3014 2 Median 0.48448 0.61138 4.3014 2 0 Median NaN NaN NaN 0 0 Median 26020000 17693000 8327100 26020000 17693000 8327100 0 0 0 1824 44 1871 6729;6730;6731 10175;10176;10177 10175 3 DLQDELAGNSEQR QEQIKQRTKLELKAKDLQDELAGNSEQRKR AKDLQDELAGNSEQRKRLLKERQKLLEKIE K D L Q R K 1 1 1 2 0 2 2 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 13 0 1473.6696 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 311 323 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.0091302 49.448 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2739400 0 2739400 0 0 0 2739400 0 2739400 1825 663 1872 6732 10178 10178 1 DLQDELAGNSEQRK QEQIKQRTKLELKAKDLQDELAGNSEQRKR KDLQDELAGNSEQRKRLLKERQKLLEKIEE K D L R K R 1 1 1 2 0 2 2 1 0 0 2 1 0 0 0 1 0 0 0 0 0 0 14 1 1601.7645 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 311 324 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 2.6923E-27 178.95 4 0.64253 0.82517 NaN 1 Median 0.64253 0.82517 NaN 1 0 Median NaN NaN NaN 0 0 Median 12401000 9632900 2768100 12401000 9632900 2768100 0 0 0 1826 663 1873 6733;6734;6735;6736 10179;10180;10181;10182;10183;10184 10179 6 DLQHPNEFIR RLLHEMILVCDAYRKDLQHPNEFIRGSTLR DAYRKDLQHPNEFIRGSTLRFLCKLKEAEL K D L I R G 0 1 1 1 0 1 1 0 1 1 1 0 0 1 1 0 0 0 0 0 0 0 10 0 1267.6309 P53618;E9PP73;E9PP63;E9PKQ1 P53618 108 117 COPB1 Coatomer subunit beta yes no 2 0.0068617 57.598 1 0.68317 0.93543 NaN 1 Median 0.68317 0.93543 NaN 1 0 Median NaN NaN NaN 0 0 Median 4317100 2442700 1874300 4317100 2442700 1874300 0 0 0 1827 1370 1874 6737 10185 10185 1 DLQIEVQEELKR QLRAEILKKRALLDKDLQIEVQEELKRDLK LDKDLQIEVQEELKRDLKIKKEKDLMQLAQ K D L K R D 0 1 0 1 0 2 3 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 12 1 1498.7991 E7ETD6;Q12830;Q9H5E0;J3KSK9;E9PE19;B4DJV8;J3QQQ8 E7ETD6 2480 2491 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.0015268 77.379 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6653600 6653600 0 6653600 6653600 0 0 0 0 1828 1015 1875 6738 10186 10186 1 DLQMVNISLR IRARPRKISSPTGSKDLQMVNISLRVLSRP PTGSKDLQMVNISLRVLSRPNAQELPSMYQ K D L L R V 0 1 1 1 0 1 0 0 0 1 2 0 1 0 0 1 0 0 0 1 0 0 10 0 1187.6332 J3KPX7;Q99623;F5GY37;B4DW05;F5GWA7 J3KPX7 98 107 PHB2 Prohibitin-2 yes no 2 0.00046628 125.75 6 3 0.88595 1.2873 59.336 6 Median 0.50902 0.70558 9.6893 3 0 Median 1.3893 2.0879 1.4787 3 0 Median 78345000 35162000 43184000 26347000 13702000 12645000 51998000 21459000 30538000 1829 1133 1876;1877 6739;6740;6741;6742;6743;6744;6745;6746;6747 10187;10188;10189;10190;10191;10192;10193;10194;10195;10196;10197 10196 402 10 DLQNVNITLR CRSRPRNVPVITGSKDLQNVNITLRILFRP ITGSKDLQNVNITLRILFRPVASQLPRIFT K D L L R I 0 1 2 1 0 1 0 0 0 1 2 0 0 0 0 0 1 0 0 1 0 0 10 0 1184.6513 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0;C9JW96;C9JZ20;E7ESE2;E9PCW0;D6RBK0;A8K9G2 Q6PUJ7 84 93 HEL-S-54e;PHB Prohibitin yes no 2 1.0971E-07 152.11 4 2 0.58889 0.8175 66.307 6 Median 0.58563 0.80408 2.8208 4 0 Median 1.8237 2.8846 2.4413 2 0 Median 527710000 312860000 214850000 457320000 286100000 171220000 70390000 26762000 43628000 1830 600 1878 6748;6749;6750;6751;6752;6753 10198;10199;10200;10201;10202;10203;10204;10205;10206;10207;10208;10209;10210 10201 13 DLQPFPTCQALVYR NVDPEDLIPKLPRPRDLQPFPTCQALVYRG RDLQPFPTCQALVYRGHSDLVRCLSVSPGG R D L Y R G 1 1 0 1 1 2 0 0 0 0 2 0 0 1 2 0 1 0 1 1 0 0 14 0 1706.845 B2RDN4;Q14137;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 B2RDN4 397 410 BOP1 Ribosome biogenesis protein BOP1 yes no 2 1.5028E-09 145.23 4 2 0.81432 1.0995 15.797 6 Median 0.86757 1.1569 2.7709 4 0 Linear 0.53246 0.82733 4.0988 2 0 Median 131180000 75208000 55974000 84609000 45653000 38956000 46573000 29554000 17019000 1831 738 1879 6754;6755;6756;6757;6758;6759 10211;10212;10213;10214;10215;10216;10217 10212 7 DLQSNVEHLTEK GADAAYIFEEPFDIRDLQSNVEHLTEKMKT DIRDLQSNVEHLTEKMKTTIQRGLVLRNES R D L E K M 0 0 1 1 0 1 2 0 1 0 2 1 0 0 0 1 1 0 0 1 0 0 12 0 1411.6943 Q01813;O14943;Q8WTZ9;B1APP8 Q01813 614 625 PFKP;PFK-P ATP-dependent 6-phosphofructokinase, platelet type yes no 2 7.3624E-12 132.32 2 1 0.70467 0.85303 NaN 1 Median 0.70467 0.85303 NaN 1 0 Median NaN NaN NaN 0 0 Median 40277000 13349000 26929000 22447000 13349000 9098800 17830000 0 17830000 1832 1434 1880 6760;6761;6762 10218;10219;10220;10221 10220 4 DLRPSALPFVASLIR FEQALTGAFMSAVIKDLRPSALPFVASLIR DLRPSALPFVASLIRHYTMVAVAQQCGPFL K D L I R H 2 2 0 1 0 0 0 0 0 1 3 0 0 1 2 2 0 0 0 1 0 0 15 1 1653.9566 Q59FH1;H0Y4W2;F2Z2U4;Q9Y4A5 Q59FH1 747 761 TRRAP Transformation/transcription domain-associated protein yes no 3 0.0031836 53.169 3 0.44421 0.55799 60.729 3 Median 0.44421 0.55799 60.729 3 0 Median NaN NaN NaN 0 0 Median 6497700 4266300 2231400 6497700 4266300 2231400 0 0 0 1833 1050 1881 6763;6764;6765 10222;10223;10224 10223 3 DLSDAIEQTFQR GSSVEISLENSELFKDLSDAIEQTFQRRNS LFKDLSDAIEQTFQRRNSETKVRRSTRLQK K D L Q R R 1 1 0 2 0 2 1 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 12 0 1421.6787 E9PEI0;Q69YH5;A8K8Z0;B3KRS8 E9PEI0 857 868 CDCA2 Cell division cycle-associated protein 2 yes no 2 8.6457E-22 172.88 4 2 0.6961 0.93069 14.582 5 Median 0.70624 0.9401 16.633 4 0 Median 0.53139 0.84235 NaN 1 0 Median 89514000 47663000 41851000 49020000 29686000 19335000 40494000 17978000 22517000 1834 1023 1882 6766;6767;6768;6769;6770;6771 10225;10226;10227;10228;10229;10230;10231;10232;10233 10227 9 DLSELGSVR RAQFEQLKDGKTTVKDLSELGSVRTLLQGS GKTTVKDLSELGSVRTLLQGSGCLAGIYLE K D L V R T 0 1 0 1 0 0 1 1 0 0 2 0 0 0 0 2 0 0 0 1 0 0 9 0 974.50327 Q15149;D3DWL0 Q15149 3477 3485 PLEC;PLEC1 Plectin yes no 2 0.0071013 69.825 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7754700 7754700 0 7754700 7754700 0 0 0 0 1835 1507 1883 6772 10234 10234 1 DLSGGLGGQEEEEEQR AWLDEDSNLSPSPLRDLSGGLGGQEEEEEQ LSGGLGGQEEEEEQRWLDALEKGELDDNGD R D L Q R W 0 1 0 1 0 2 5 4 0 0 2 0 0 0 0 1 0 0 0 0 0 0 16 0 1731.7548 J3KQ70;B4DJ31;Q9C086;B8ZZ93;B8ZZH7;F8WCL7 J3KQ70 136 151 INO80B-WBP1;INO80B INO80 complex subunit B yes no 2 5.4684E-05 111.12 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1836 813 1884 6773 10235 10235 1 DLSHIGDAVVISCAK CVVKMPSGEFACICRDLSHIGDAVVISCAK DLSHIGDAVVISCAKDGVKFSASGELGNGN R D L A K D 2 0 0 2 1 0 0 1 1 2 1 1 0 0 0 2 0 0 0 2 0 0 15 0 1583.7977 Q6FI35;Q6FHF5;P12004 Q6FI35 150 164 PCNA Proliferating cell nuclear antigen yes no 2;3 3.7738E-05 98.902 5 0.46765 0.57277 NaN 1 Median 0.46765 0.57277 NaN 1 0 Median NaN NaN NaN 0 0 Median 31426000 23175000 8251000 31426000 23175000 8251000 0 0 0 1837 1259 1885 6774;6775;6776;6777;6778 10236;10237;10238;10239;10240;10241 10238 6 DLSSEELAAFQK SIIGSARSLGIRVVKDLSSEELAAFQKERA VVKDLSSEELAAFQKERAIFLAAQKEADLA K D L Q K E 2 0 0 1 0 1 2 0 0 0 2 1 0 1 0 2 0 0 0 0 0 0 12 0 1336.6511 Q53G19;Q9Y3B7 Q53G19 158 169 MRPL11 39S ribosomal protein L11, mitochondrial yes no 2 0.002495 96.665 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1589000 1589000 0 1589000 1589000 0 0 0 0 1838 1540 1886 6779;6780 10242;10243 10243 2 DLSSGLVPK LFDQKKEQKPEMMEKDLSSGLVPKKKQSVV PEMMEKDLSSGLVPKKKQSVVQEKKQEEGA K D L P K K 0 0 0 1 0 0 0 1 0 0 2 1 0 0 1 2 0 0 0 1 0 0 9 0 914.5073 A0A024R0F1;Q9UNY4 A0A024R0F1 177 185 TTF2 Transcription termination factor 2 yes no 2 0.027536 47.082 1 0.95375 1.1864 NaN 1 Median 0.95375 1.1864 NaN 1 0 Median NaN NaN NaN 0 0 Median 7989500 4631700 3357800 7989500 4631700 3357800 0 0 0 1839 33 1887 6781 10244 10244 1 DLSSSEPVHAK QLMKDLGQRVSFLTRDLSSSEPVHAKKRKH FLTRDLSSSEPVHAKKRKHERIIDKYEKIP R D L A K K 1 0 0 1 0 0 1 0 1 0 1 1 0 0 1 3 0 0 0 1 0 0 11 0 1168.5724 A8K905;Q8WTT2 A8K905 113 123 NOC3L Nucleolar complex protein 3 homolog yes no 2 2.69E-06 111.46 2 2 0.72288 1.0361 10.951 4 Median 0.86448 1.1075 17.492 2 0 Median 0.68781 1.0361 3.0567 2 0 Median 191720000 108830000 82888000 156570000 88210000 68356000 35155000 20623000 14532000 1840 643 1888 6782;6783;6784;6785 10245;10246;10247;10248;10249 10248 5 DLSSVQTLLTK IGEKENSLKTDDYGRDLSSVQTLLTKQETF DYGRDLSSVQTLLTKQETFDAGLQAFQQEG R D L T K Q 0 0 0 1 0 1 0 0 0 0 3 1 0 0 0 2 2 0 0 1 0 0 11 0 1203.6711 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16;Q14917 Q13813 2007 2017 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 4.05E-07 140.78 2 0.85958 1.0507 NaN 1 Median 0.85958 1.0507 NaN 1 0 Median NaN NaN NaN 0 0 Median 21775000 12798000 8976700 21775000 12798000 8976700 0 0 0 1841 1476 1889 6786;6787 10250;10251;10252;10253 10250 4 DLSTVEALQNLK CPNLTYLNLSGNKIKDLSTVEALQNLKNLK KIKDLSTVEALQNLKNLKSLDLFNCEITNL K D L L K N 1 0 1 1 0 1 1 0 0 0 3 1 0 0 0 1 1 0 0 1 0 0 12 0 1329.714 Q53F20;Q9BTT0;E9PPH5 Q53F20 102 113 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 2 1.683E-21 152.86 4 2 0.5845 0.71694 91.632 6 Median 0.48206 0.60927 16.439 4 0 Median 2.4416 3.6869 5.6341 2 0 Median 112030000 59167000 52863000 80531000 50195000 30336000 31499000 8971900 22527000 1842 1538 1890 6788;6789;6790;6791;6792;6793 10254;10255;10256;10257;10258;10259;10260;10261;10262;10263;10264;10265 10262 11 DLSYCLSGMYDHR GLSDGYGFTTDLFGRDLSYCLSGMYDHRYG GRDLSYCLSGMYDHRYGDSEFTVQSTTGHC R D L H R Y 0 1 0 2 1 0 0 1 1 0 2 0 1 0 0 2 0 0 2 0 0 0 13 0 1615.6759 A0A024R7T3;P52597;B4DKS8 A0A024R7T3 263 275 HNRPF;HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 2 0.0013767 60.641 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2616000 0 2616000 0 0 0 2616000 0 2616000 1843 184 1891 6794 10266 10266 82 1 DLTDYLMK YALPHAILRLDLAGRDLTDYLMKILTERGY RLDLAGRDLTDYLMKILTERGYSFTTTAER R D L M K I 0 0 0 2 0 0 0 0 0 0 2 1 1 0 0 0 1 0 1 0 0 0 8 0 997.47903 B7Z6P1;P68133;P68032;A8K3K1;D2JYH4;P63267;P62736;B3KW67;Q13707;B4DUI8;K4EQ44;K4EP00;K4ENJ5;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;B3KUD3;A0AUL6;P63261;B4E3A4;I3L3I0;I3L1U9;I3L4N8;Q562R1;V9HVZ7 Q53GK6 184 191 ACTA1;ACTC1;ACTA2;ACTG2;PS1TP5BP1;ACTB;ACTG1;ACTBL2;HEL-176 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Beta-actin-like protein 2 no no 1;2 0.00027941 176.41 15 4 0.76916 0.98362 72.648 18 Median 0.75446 0.96178 6.9209 14 0 Median 3.2667 5.0086 20.892 4 0 Median 903520000 410690000 492830000 541630000 311160000 230470000 361890000 99532000 262360000 1844 1388;1420;914;1859;1547 1892;1893 6795;6796;6797;6798;6799;6800;6801;6802;6803;6804;6805;6806;6807;6808;6809;6810;6811;6812;6813 10267;10268;10269;10270;10271;10272;10273;10274;10275;10276;10277;10278;10279;10280;10281;10282;10283;10284;10285;10286;10287;10288;10289;10290;10291;10292;10293 10270 312 27 DLTEALDEDADPTK EEEVAKEQLTDADTKDLTEALDEDADPTKS KDLTEALDEDADPTKSALSAVASLAAAWPQ K D L T K S 2 0 0 4 0 0 2 0 0 0 2 1 0 0 1 0 2 0 0 0 0 0 14 0 1531.689 D3DS96;Q9NRL2 D3DS96 503 516 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 9.1095E-07 119.74 4 2 0.75505 1.1454 28.586 3 Median 0.60817 0.76781 NaN 1 0 Median 0.82735 1.237 10.873 2 0 Median 26162000 15694000 10467000 8997300 6304600 2692700 17164000 9389700 7774800 1845 979 1894 6814;6815;6816;6817;6818;6819 10294;10295;10296;10297;10298;10299;10300;10301;10302 10300 9 DLTGVQNLR IKEKKLLVGSEDYGRDLTGVQNLRKKHKRL SEDYGRDLTGVQNLRKKHKRLEAELAAHEP R D L L R K 0 1 1 1 0 1 0 1 0 0 2 0 0 0 0 0 1 0 0 1 0 0 9 0 1014.5458 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16;Q14917 Q13813 1795 1803 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.0021023 86.794 1 0.77012 1.0191 NaN 1 Median 0.77012 1.0191 NaN 1 0 Median NaN NaN NaN 0 0 Median 9322500 6005700 3316700 9322500 6005700 3316700 0 0 0 1846 1476 1895 6820 10303;10304 10303 2 DLTIPESSTVK EQSPRKRGRPPKDEKDLTIPESSTVKGMMA KDEKDLTIPESSTVKGMMAGPMAAFKWQPT K D L V K G 0 0 0 1 0 0 1 0 0 1 1 1 0 0 1 2 2 0 0 1 0 0 11 0 1188.6238 K7EMM8;D3DUE6;Q49A26;D3DUE7;K7EPU6 Q49A26 168 178 GLYR1;N-PAC Putative oxidoreductase GLYR1 no no 2 0.0099115 109.44 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20425000 0 20425000 20425000 0 20425000 0 0 0 1847 982;1533 1896 6821 10305 10305 1 DLTLEENQVK EFEERMEEESQSQGRDLTLEENQVKKYHRL QSQGRDLTLEENQVKKYHRLKEEASKRAAT R D L V K K 0 0 1 1 0 1 2 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1187.6034 Q14683;G8JLG1;Q6P2R1;Q6MZR8;A8K7A6;Q68EN4 Q14683 364 373 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0002677 114.89 4 1 0.62681 0.79356 42.029 4 Median 0.64138 0.81253 37.588 3 0 Plateau 0.76844 1.1348 NaN 1 0 Median 31663000 19963000 11700000 22236000 15121000 7114900 9427000 4842200 4584800 1848 1492 1897 6822;6823;6824;6825;6826 10306;10307;10308;10309;10310;10311 10310 6 DLTLEENQVKK EFEERMEEESQSQGRDLTLEENQVKKYHRL SQGRDLTLEENQVKKYHRLKEEASKRAATL R D L K K Y 0 0 1 1 0 1 2 0 0 0 2 2 0 0 0 0 1 0 0 1 0 0 11 1 1315.6983 Q14683;G8JLG1;Q6P2R1;Q6MZR8;A8K7A6;Q68EN4 Q14683 364 374 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.001034 114.86 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4223400 4223400 0 4223400 4223400 0 0 0 0 1849 1492 1898 6827;6828;6829 10312;10313;10314 10313 3 DLTNSHFFLFDFQK FLRAVTKLGFKIVSKDLTNSHFFLFDFQKT KDLTNSHFFLFDFQKTGPPLVGPKAQLSGL K D L Q K T 0 0 1 2 0 1 0 0 1 0 2 1 0 4 0 1 1 0 0 0 0 0 14 0 1757.8413 O43159;E9PPP6 O43159 418 431 RRP8 Ribosomal RNA-processing protein 8 yes no 3 3.0894E-05 83.877 4 0.71183 0.89483 3.9771 3 Plateau 0.71183 0.89483 3.9771 3 0 Plateau NaN NaN NaN 0 0 Median 26820000 14924000 11896000 26820000 14924000 11896000 0 0 0 1850 1181 1899 6830;6831;6832;6833 10315;10316;10317;10318;10319;10320 10318 6 DLTNVQNLQK LYEVEGHLASDDYGKDLTNVQNLQKKHALL DDYGKDLTNVQNLQKKHALLEADVAAHQDR K D L Q K K 0 0 2 1 0 2 0 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1171.6197 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 709 718 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 4.8074E-06 116.25 1 0.89894 1.0974 NaN 1 Median 0.89894 1.0974 NaN 1 0 Median NaN NaN NaN 0 0 Median 31041000 16772000 14268000 31041000 16772000 14268000 0 0 0 1851 1476 1900 6834 10321;10322 10322 2 DLTQNTVVSINFK ILPDQIVCSPVPMLRDLTQNTVVSINFKDP LRDLTQNTVVSINFKDPQFAEDYIFKAVML R D L F K D 0 0 2 1 0 1 0 0 0 1 1 1 0 1 0 1 2 0 0 2 0 0 13 0 1477.7777 B4E0B9;B4DZC3;B3KMC9;Q9H0D6 B4E0B9 668 680 XRN2 5-3 exoribonuclease 2 yes no 2 0.00012983 116.23 1 0.69243 0.85071 NaN 1 Median 0.69243 0.85071 NaN 1 0 Median NaN NaN NaN 0 0 Median 1384100 705890 678190 1384100 705890 678190 0 0 0 1852 754 1901 6835 10323 10323 1 DLTSVNILLK LHGLESQIQSDDYGKDLTSVNILLKKQQML DDYGKDLTSVNILLKKQQMLENQMEVRKKE K D L L K K 0 0 1 1 0 0 0 0 0 1 3 1 0 0 0 1 1 0 0 1 0 0 10 0 1114.6598 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;O15020 B2ZZ89 1411 1420 SPTBN1;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2 yes no 1;2 0.00019716 116.73 5 0.89485 1.0925 12.564 3 Median 0.89485 1.0925 12.564 3 0 Median NaN NaN NaN 0 0 Median 37836000 21121000 16715000 37836000 21121000 16715000 0 0 0 1853 346 1902 6836;6837;6838;6839;6840 10324;10325;10326;10327;10328;10329;10330 10328 7 DLTTAGAVTQCYR YDSRSGTHNMYREYRDLTTAGAVTQCYRDM YRDLTTAGAVTQCYRDMGARHRARAHSIQI R D L Y R D 2 1 0 1 1 1 0 1 0 0 1 0 0 0 0 0 3 0 1 1 0 0 13 0 1454.6824 Q02543;M0R3D6;M0R1A7;B2R4C0;M0R0P7;M0R117;B4DM74;Q32XH3 Q02543 99 111 RPL18A 60S ribosomal protein L18a yes no 2 2.6248E-65 256.24 4 2 0.70974 0.96953 15.01 6 Median 0.69424 0.95695 1.7634 4 0 Median 0.78463 1.2759 0.2617 2 0 Median 1318600000 793380000 525170000 1178200000 711830000 466360000 140360000 81549000 58807000 1854 1436 1903 6841;6842;6843;6844;6845;6846 10331;10332;10333;10334;10335;10336;10337;10338;10339;10340;10341;10342;10343;10344;10345;10346;10347 10331 17 DLVAQAPLKPK KIHPLVRLPLATIVKDLVAQAPLKPKTPRG TIVKDLVAQAPLKPKTPRGTKTPINRNQLS K D L P K T 2 0 0 1 0 1 0 0 0 0 2 2 0 0 2 0 0 0 0 1 0 0 11 1 1178.7023 A0A024R534;O94776 A0A024R534 523 533 MTA2 Metastasis-associated protein MTA2 yes no 2 0.00029923 98.033 3 2 0.85669 1.0533 32.054 5 Median 0.7397 0.9052 9.4939 3 0 Median 1.0369 1.6715 4.7328 2 0 Median 274470000 144550000 129910000 161350000 89126000 72225000 113120000 55429000 57687000 1855 133 1904 6847;6848;6849;6850;6851 10348;10349;10350;10351;10352;10353;10354;10355 10351 8 DLVEGFTDAEIRR DKKPKRRGRPRSVRKDLVEGFTDAEIRRFI RKDLVEGFTDAEIRRFIKAYKKFGLPLERL K D L R R F 1 2 0 2 0 0 2 1 0 1 1 0 0 1 0 0 1 0 0 1 0 0 13 1 1519.7631 A0A024RC75;O14647;A0A1B0GTM9 A0A024RC75 1126 1138 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 2 0.0087901 77.64 2 0.67309 0.92745 19.278 2 Median 0.67309 0.92745 19.278 2 0 Median NaN NaN NaN 0 0 Median 5637300 2908900 2728400 5637300 2908900 2728400 0 0 0 1856 289 1905 6852;6853 10356;10357 10356 2 DLVLGPSGVLQGIRPGK CDITFACVSDPKAAKDLVLGPSGVLQGIRP VLGPSGVLQGIRPGKCYVDMSTVDADTVTE K D L G K C 0 1 0 1 0 1 0 4 0 1 3 1 0 0 2 1 0 0 0 2 0 0 17 1 1704.9887 K7EMM8;D3DUE6;Q49A26;D3DUE7 Q49A26 310 326 GLYR1;N-PAC Putative oxidoreductase GLYR1 no no 2;3 4.2707E-18 129.71 8 4 0.80877 1.0955 6.8256 12 Median 0.85278 1.128 7.708 8 0 Median 0.63031 1.0702 3.0728 4 0 Median 479730000 267380000 212350000 249270000 130970000 118300000 230460000 136410000 94055000 1857 982;1533 1906 6854;6855;6856;6857;6858;6859;6860;6861;6862;6863;6864;6865 10358;10359;10360;10361;10362;10363;10364;10365;10366;10367;10368;10369;10370;10371;10372;10373;10374;10375;10376;10377;10378;10379;10380;10381 10366 24 DLVLPTQALPASPALK GAQDSEAAFAKLDQKDLVLPTQALPASPAL LVLPTQALPASPALKNKRPRKDENESSAPA K D L L K N 3 0 0 1 0 1 0 0 0 0 4 1 0 0 3 1 1 0 0 1 0 0 16 0 1632.9451 Q15554;H3BR06;U3KQ35;J3KSZ6 Q15554 354 369 TERF2 Telomeric repeat-binding factor 2 yes no 2 0.0071252 59.57 2 0.69813 0.88798 3.4302 2 Median 0.69813 0.88798 3.4302 2 0 Median NaN NaN NaN 0 0 Median 4907800 3266800 1641000 4907800 3266800 1641000 0 0 0 1858 1513 1907 6866;6867 10382;10383 10383 2 DLVWLEEIQEEAER CDQKLMEFLCNMDNKDLVWLEEIQEEAERM KDLVWLEEIQEEAERMFTREFSKEPELMPK K D L E R M 1 1 0 1 0 1 5 0 0 1 2 0 0 0 0 0 0 1 0 1 0 0 14 0 1757.8472 Q9NQS7;B3KPD3;E9PM67 Q9NQS7 30 43 INCENP Inner centromere protein yes no 2 3.0631E-08 128.85 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1189300 0 1189300 1189300 0 1189300 0 0 0 1859 1752 1908 6868;6869 10384;10385 10384 2 DLYANTVLSGGTTMYPGIADR TTFNSIMKCDVDIRKDLYANTVLSGGTTMY VLSGGTTMYPGIADRMQKEITALAPSTMKI K D L D R M 2 1 1 2 0 0 0 3 0 1 2 0 1 0 1 1 3 0 2 1 0 0 21 0 2214.0627 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;Q96DE1;Q96FU6;A4UCT3;F1BXA6;A5GZ75;Q9UE89;P63261;B4E3A4;B4DVQ0;V9HVZ7 Q53GK6 292 312 PS1TP5BP1;ACTB;ACTG1;HEL-176 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2 2.7414E-140 276.34 12 2 0.73324 1.0156 61.304 11 Median 0.73129 1.0151 2.2758 9 0 Median 2.7432 4.5929 4.1498 2 0 Median 2390900000 976230000 1414700000 1093900000 615950000 477920000 1297100000 360280000 936770000 1860 1388;1420;1859 1909;1910 6870;6871;6872;6873;6874;6875;6876;6877;6878;6879;6880;6881;6882;6883 10386;10387;10388;10389;10390;10391;10392;10393;10394;10395;10396;10397;10398;10399;10400;10401;10402;10403;10404;10405;10406;10407;10408;10409;10410;10411;10412;10413;10414;10415;10416 10407 604 31 DLYEDELVPLFEK QPGIGTEVFVGKIPRDLYEDELVPLFEKAG PRDLYEDELVPLFEKAGPIWDLRLMMDPLS R D L E K A 0 0 0 2 0 0 3 0 0 0 3 1 0 1 1 0 0 0 1 1 0 0 13 0 1608.7923 Q0VGD6;Q6MZS5;B2R7W4;O43390;B4DT28;B4DMB1 Q0VGD6 149 161 HNRPR;DKFZp686A13234;HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 2 1.5352E-12 161.19 4 0.6137 0.79259 1.9569 3 Median 0.6137 0.79259 1.9569 3 0 Median NaN NaN NaN 0 0 Median 37946000 25612000 12334000 37946000 25612000 12334000 0 0 0 1861 711 1911 6884;6885;6886;6887 10417;10418;10419;10420;10421 10418 5 DLYIRPNIAQK DSLVINLNRSNPKLKDLYIRPNIAQKRMQG PKLKDLYIRPNIAQKRMQGSLEAHVNGFRF K D L Q K R 1 1 1 1 0 1 0 0 0 2 1 1 0 0 1 0 0 0 1 0 0 0 11 1 1329.7405 Q9Y5B9 Q9Y5B9 664 674 SUPT16H FACT complex subunit SPT16 yes yes 2;3 2.535E-11 161.63 3 3 0.7187 1.0516 14.644 6 Median 0.72417 0.95457 7.4751 3 0 Median 0.72201 1.2597 9.2086 3 0 Plateau 336380000 193750000 142630000 145970000 83499000 62472000 190410000 110250000 80158000 1862 1829 1912 6888;6889;6890;6891;6892;6893 10422;10423;10424;10425;10426;10427;10428;10429;10430;10431;10432;10433;10434 10434 13 DLYLIPLSAQDPVPSK RGRFGVVANNNRHVKDLYLIPLSAQDPVPS LYLIPLSAQDPVPSKLLPFEGPGLESPRPN K D L S K L 1 0 0 2 0 1 0 0 0 1 3 1 0 0 3 2 0 0 1 1 0 0 16 0 1754.9455 Q9BTC0 Q9BTC0 1158 1173 DIDO1 Death-inducer obliterator 1 yes yes 2 0.0001928 97.957 4 1 0.95547 1.2101 9.3324 5 Median 0.98372 1.2452 7.0534 4 0 Median 0.69494 1.0551 NaN 1 0 Median 46846000 24696000 22150000 36646000 18957000 17689000 10200000 5738800 4461100 1863 1713 1913 6894;6895;6896;6897;6898 10435;10436;10437;10438;10439;10440;10441 10437 7 DMFQETMEAMR FLSNGHVTIPGQQDKDMFQETMEAMRIMGI QQDKDMFQETMEAMRIMGIPEEEQMGLLRV K D M M R I 1 1 0 1 0 1 2 0 0 0 0 0 3 1 0 0 1 0 0 0 0 0 11 0 1387.557 A0A024R1N1;P35579;Q86XU5;B4E3S1 A0A024R1N1 317 327 MYH9 Myosin-9 yes no 2 0.0011359 57.174 1 3.3173 4.9833 NaN 1 Median NaN NaN NaN 0 0 Median 3.3173 4.9833 NaN 1 0 Median 7228000 1605000 5623000 0 0 0 7228000 1605000 5623000 1864 61 1914 6899 10442 10442 16;17;18 1 DMFSFEIPEHHVIVSASSDGFIK LVCLCEFKAHENRVKDMFSFEIPEHHVIVS EHHVIVSASSDGFIKMWKLKQDKKVPPSLL K D M I K M 1 0 0 2 0 0 2 1 2 3 0 1 1 3 1 4 0 0 0 2 0 0 23 0 2591.2366 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 250 272 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 3 8.3868E-06 48.641 1 0.75225 1.1458 NaN 1 Median NaN NaN NaN 0 0 Median 0.75225 1.1458 NaN 1 0 Median 24889000 16385000 8503900 0 0 0 24889000 16385000 8503900 1865 478 1915 6900 10443 10443 169 1 DMPIQAFLLYQEPVLGPVR KVLPVPQKAVPYPQRDMPIQAFLLYQEPVL QAFLLYQEPVLGPVRGPFPIIV________ R D M V R G 1 1 0 1 0 2 1 1 0 1 3 0 1 1 3 0 0 0 1 2 0 0 19 0 2185.1605 CON__P02666 CON__P02666 184 202 yes yes 2 0.0003528 98.694 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1489000 1489000 0 1489000 1489000 0 0 0 0 + 1866 951 1916 6901;6902 10444;10445 10444 326 2 DNAAVDGISLHLQDICPLLYSTDDAICSK LTGALIASLINCYIRDNAAVDGISLHLQDI ICPLLYSTDDAICSKANELLQRSRQVQNKT R D N S K A 3 0 1 5 2 1 0 1 1 3 4 1 0 0 1 3 1 0 1 1 0 0 29 0 3203.5115 B4DLT2;A0A024R071;O75694 B4DLT2 810 838 NUP155 Nuclear pore complex protein Nup155 yes no 3 0.04541 22.56 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4796200 4796200 0 4796200 4796200 0 0 0 0 1867 29 1917 6903 10446 10446 1 DNALLSAIEESR PVKDTDIQGFLKNEKDNALLSAIEESRKRT NEKDNALLSAIEESRKRTFGMAEEYHRESM K D N S R K 2 1 1 1 0 0 2 0 0 1 2 0 0 0 0 2 0 0 0 0 0 0 12 0 1316.6572 H3BVG0;Q8N1F7;A8K897;H3BV11;H3BRI8;H3BM93;H3BNN5 H3BVG0 107 118 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.024943 49.934 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1868 1111 1918 6904 10447 10447 1 DNCPNLPNSGQEDYDK EDLLCVANATYHCRKDNCPNLPNSGQEDYD NCPNLPNSGQEDYDKDGIGDACDDDDDNDK K D N D K D 0 0 3 3 1 1 1 1 0 0 1 1 0 0 2 1 0 0 1 0 0 0 16 0 1864.7534 CON__Q28194;A0A024R9Q1;P07996 CON__Q28194 716 731 THBS1 Thrombospondin-1 yes no 2 0.0056886 91.202 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 700310 700310 0 700310 700310 0 0 0 0 + 1869 229 1919 6905 10448 10448 1 DNEEVVLSENK KKNAQQLKRNPKRKKDNEEVVLSENKVRNT KRKKDNEEVVLSENKVRNTVKKNKNHLKDL K D N N K V 0 0 2 1 0 0 3 0 0 0 1 1 0 0 0 1 0 0 0 2 0 0 11 0 1274.599 A0A024RD28;Q7L2Z9 A0A024RD28 24 34 C6orf139;CENPQ Centromere protein Q yes no 2 0.010017 50.194 2 0.85836 1.0504 NaN 1 Median 0.85836 1.0504 NaN 1 0 Median NaN NaN NaN 0 0 Median 3127600 1865700 1261900 3127600 1865700 1261900 0 0 0 1870 309 1920 6906;6907 10449;10450;10451 10450 3 DNEQALYELVK DEKGVEAIPEGSHIKDNEQALYELVKCNFD SHIKDNEQALYELVKCNFDTEEALRRLRFN K D N V K C 1 0 1 1 0 1 2 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 11 0 1320.6561 Q8N108 Q8N108 252 262 MIER1 Mesoderm induction early response protein 1 yes yes 2 0.00011865 129.88 3 0.65876 0.83586 NaN 1 Median 0.65876 0.83586 NaN 1 0 Median NaN NaN NaN 0 0 Median 14669000 13146000 1522700 14669000 13146000 1522700 0 0 0 1871 1633 1921 6908;6909;6910 10452;10453;10454;10455 10452 4 DNFGFIETANHDK NSNSKRLLGYVATLKDNFGFIETANHDKEI LKDNFGFIETANHDKEIFFHYSEFSGDVDS K D N D K E 1 0 2 2 0 0 1 1 1 1 0 1 0 2 0 0 1 0 0 0 0 0 13 0 1506.6739 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0;Q9UG93 Q9GZV0 497 509 CSDE1;UNR;DKFZp586J0620 Cold shock domain-containing protein E1 yes no 2 1.6131E-20 166.11 3 2 0.4594 0.56097 NaN 1 Median 0.4594 0.56097 NaN 1 0 Median NaN NaN NaN 0 0 Median 34409000 14069000 20340000 24385000 14069000 10316000 10024000 0 10024000 1872 31 1922 6911;6912;6913;6914;6915 10456;10457;10458;10459;10460;10461 10457 6 DNGNGTYSCSYVPR QVQDNEGCPVEALVKDNGNGTYSCSYVPRK KDNGNGTYSCSYVPRKPVKHTAMVSWGGVS K D N P R K 0 1 2 1 1 0 0 2 0 0 0 0 0 0 1 2 1 0 2 1 0 0 14 0 1588.6576 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 725 738 FLNA Filamin-A yes no 2 0.024251 78.763 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 637250 637250 0 637250 637250 0 0 0 0 1873 1287 1923 6916 10462 10462 1 DNGNLCDYDTQNILELK LQVTNEFQTVDLLIKDNGNLCDYDTQNILE GNLCDYDTQNILELKKYVTDRKSAEQNESK K D N L K K 0 0 3 3 1 1 1 1 0 1 3 1 0 0 0 0 1 0 1 0 0 0 17 0 2023.9157 Q562F6;B7Z7S9 Q562F6 871 887 SGOL2 Shugoshin-like 2 yes no 2 0.017233 75.589 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 714430 714430 0 714430 714430 0 0 0 0 1874 1546 1924 6917 10463;10464 10464 2 DNHLLGTFDLTGIPPAPR TVTIKVYEGERPLTKDNHLLGTFDLTGIPP LLGTFDLTGIPPAPRGVPQIEVTFEIDVNG K D N P R G 1 1 1 2 0 0 0 2 1 1 3 0 0 1 3 0 2 0 0 0 0 0 18 0 1933.0058 V9HWB4;P11021 V9HWB4 475 492 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 3 0.011333 22.313 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2815000 2815000 0 2815000 2815000 0 0 0 0 1875 1252 1925 6918 10465 10465 1 DNIDITLQWLIQHSK QDREICCYSISCKEKDNIDITLQWLIQHSK DNIDITLQWLIQHSKSRRS___________ K D N S K S 0 0 1 2 0 2 0 0 1 3 2 1 0 0 0 1 1 1 0 0 0 0 15 0 1822.9577 B4DQT8;A0A024R977;A0A024R2D4;B4E1J8;Q9NVJ2;Q96BM9;B2R7U5 B4DQT8 159 173 ARL8A;ARL8B ADP-ribosylation factor-like protein 8B;ADP-ribosylation factor-like protein 8A yes no 2 1.1445E-22 166.7 2 0.70509 0.91908 17.176 2 Median 0.70509 0.91908 17.176 2 0 Median NaN NaN NaN 0 0 Median 6820300 4122500 2697800 6820300 4122500 2697800 0 0 0 1876 82 1926 6919;6920 10466;10467 10467 2 DNIQGITK GLGKGGAKRHRKVLRDNIQGITKPAIRRLA RHRKVLRDNIQGITKPAIRRLARRGGVKRI R D N T K P 0 0 1 1 0 1 0 1 0 2 0 1 0 0 0 0 1 0 0 0 0 0 8 0 887.47125 B2R4R0;P62805;Q0VAS5 B2R4R0 25 32 HIST1H4H;HIST1H4A Histone H4 yes no 1;2 2.2624E-05 177.3 9 2 0.74644 0.95332 5.1287 9 Median 0.75059 0.95332 5.7238 7 0 Median 0.62406 0.97026 3.7122 2 0 Median 3695100000 2948000000 747140000 2950100000 2484300000 465800000 745060000 463720000 281340000 1877 686 1927 6921;6922;6923;6924;6925;6926;6927;6928;6929;6930;6931 10468;10469;10470;10471;10472;10473;10474;10475;10476;10477;10478;10479;10480;10481;10482;10483;10484;10485;10486 10484 19 DNIQGITKPAIR GLGKGGAKRHRKVLRDNIQGITKPAIRRLA VLRDNIQGITKPAIRRLARRGGVKRISGLI R D N I R R 1 1 1 1 0 1 0 1 0 3 0 1 0 0 1 0 1 0 0 0 0 0 12 1 1324.7463 B2R4R0;P62805;Q0VAS5 B2R4R0 25 36 HIST1H4H;HIST1H4A Histone H4 yes no 2;3 5.132E-66 214.64 26 8 0.74688 0.99635 16.109 24 Median 0.74688 0.99331 8.0558 16 0 Median 0.67927 1.1892 19.077 8 0 Median 26920000000 15141000000 11779000000 22263000000 12257000000 10006000000 4657800000 2884500000 1773300000 1878 686 1928 6932;6933;6934;6935;6936;6937;6938;6939;6940;6941;6942;6943;6944;6945;6946;6947;6948;6949;6950;6951;6952;6953;6954;6955;6956;6957;6958;6959;6960;6961;6962;6963;6964;6965 10487;10488;10489;10490;10491;10492;10493;10494;10495;10496;10497;10498;10499;10500;10501;10502;10503;10504;10505;10506;10507;10508;10509;10510;10511;10512;10513;10514;10515;10516;10517;10518;10519;10520;10521;10522;10523;10524;10525;10526;10527;10528;10529;10530;10531;10532;10533;10534;10535;10536;10537;10538;10539;10540;10541;10542;10543;10544;10545;10546;10547;10548;10549;10550;10551 10511 64 DNIQGITKPAIRR GLGKGGAKRHRKVLRDNIQGITKPAIRRLA LRDNIQGITKPAIRRLARRGGVKRISGLIY R D N R R L 1 2 1 1 0 1 0 1 0 3 0 1 0 0 1 0 1 0 0 0 0 0 13 2 1480.8474 B2R4R0;P62805;Q0VAS5 B2R4R0 25 37 HIST1H4H;HIST1H4A Histone H4 yes no 2;3 5.8189E-06 110.84 7 2 0.72085 0.96187 15.665 8 Median 0.74189 0.89379 17.944 6 0 Median 0.58206 1.0436 1.7938 2 0 Median 1419400000 780210000 639150000 1306300000 706880000 599470000 113010000 73324000 39687000 1879 686 1929 6966;6967;6968;6969;6970;6971;6972;6973;6974 10552;10553;10554;10555;10556;10557;10558;10559;10560;10561;10562;10563;10564;10565;10566;10567 10564 16 DNLAEDIMR VDQLTNDKARVEVERDNLAEDIMRLREKLQ RVEVERDNLAEDIMRLREKLQEEMLQREEA R D N M R L 1 1 1 2 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 9 0 1075.4968 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8 V9HWE1 176 184 HEL113;VIM Vimentin yes no 2 0.014318 48.157 1 0.9286 1.3531 NaN 1 Median NaN NaN NaN 0 0 Median 0.9286 1.3531 NaN 1 0 Median 12655000 5846100 6809100 0 0 0 12655000 5846100 6809100 1880 1245 1930 6975 10568 10568 485 1 DNLEFFLAGIGR KPSCTIIPLMKKDHRDNLEFFLAGIGRLHL DHRDNLEFFLAGIGRLHLSGIDANPNALFP R D N G R L 1 1 1 1 0 0 1 2 0 1 2 0 0 2 0 0 0 0 0 0 0 0 12 0 1350.6932 A0A0U1RQF0;P49327 A0A0U1RQF0 791 802 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0015401 102.06 2 0.58814 0.82599 27.584 2 Median 0.58814 0.82599 27.584 2 0 Median NaN NaN NaN 0 0 Median 4458600 2731500 1727100 4458600 2731500 1727100 0 0 0 1881 486 1931 6976;6977 10569;10570;10571;10572 10572 4 DNLFGGVVNPNEVFCSVPGR SKSNSNAVSAIPINKDNLFGGVVNPNEVFC GVVNPNEVFCSVPGRLSLLSSTSKYKVTVA K D N G R L 0 1 3 1 1 0 1 3 0 0 1 0 0 2 2 1 0 0 0 4 0 0 20 0 2176.0371 Q96SH1;P05549;C9JXZ2;H7C5E5;C1K3N0 Q96SH1 200 219 TFAP2A Transcription factor AP-2-alpha yes no 2 1.3801E-31 170.49 4 0.61889 0.82048 7.5847 4 Linear 0.61889 0.82048 7.5847 4 0 Linear NaN NaN NaN 0 0 Median 37370000 22319000 15051000 37370000 22319000 15051000 0 0 0 1882 1238 1932 6978;6979;6980;6981 10573;10574;10575;10576;10577;10578;10579 10573 7 DNLPLQENVTIQK AINPELLQLLPLHPKDNLPLQENVTIQKQK PKDNLPLQENVTIQKQKRRSVNSKIPAPKE K D N Q K Q 0 0 2 1 0 2 1 0 0 1 2 1 0 0 1 0 1 0 0 1 0 0 13 0 1510.7991 A8K3S3;A0A140VKF1;Q99661;B7Z6Q6;Q5JR91;Q5JR89 A8K3S3 78 90 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 2 4.0863E-34 218.55 4 0.81959 1.0381 17.359 3 Median 0.81959 1.0381 17.359 3 0 Median NaN NaN NaN 0 0 Median 103180000 65119000 38064000 103180000 65119000 38064000 0 0 0 1883 514 1933 6982;6983;6984;6985 10580;10581;10582;10583;10584;10585 10582 6 DNNQFASASLDR EGHTHYVMQIVINPKDNNQFASASLDRTIK NPKDNNQFASASLDRTIKVWQLGSSSPNFT K D N D R T 2 1 2 2 0 1 0 0 0 0 1 0 0 1 0 2 0 0 0 0 0 0 12 0 1336.6008 P35606;D6R997;B4E2C9 P35606 154 165 COPB2 Coatomer subunit beta yes no 2 0.017037 46.73 1 1 0.39296 0.54469 NaN 1 Median 0.39296 0.54469 NaN 1 0 Median NaN NaN NaN 0 0 Median 6603100 2735400 3867700 4457000 2735400 1721700 2146100 0 2146100 1884 1321 1934 6986;6987 10586;10587 10587 2 DNPGVVTCLDEAR NGEQPLSAMVSMVTKDNPGVVTCLDEARHG TKDNPGVVTCLDEARHGFESGDFVSFSEVQ K D N A R H 1 1 1 2 1 0 1 1 0 0 1 0 0 0 1 0 1 0 0 2 0 0 13 0 1444.6616 A0A024R1A3;P22314;Q5JRR9;Q5JRS0 A0A024R1A3 227 239 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 0.00044663 102.05 2 0.59518 0.84519 NaN 1 Median 0.59518 0.84519 NaN 1 0 Median NaN NaN NaN 0 0 Median 6046200 1493900 4552300 6046200 1493900 4552300 0 0 0 1885 55 1935 6988;6989 10588;10589;10590 10588 3 DNPLDPVLAK VSFAQLKNLKWLDLKDNPLDPVLAKVAGDC WLDLKDNPLDPVLAKVAGDCLDEKQCKQCA K D N A K V 1 0 1 2 0 0 0 0 0 0 2 1 0 0 2 0 0 0 0 1 0 0 10 0 1080.5815 Q96AG4 Q96AG4 117 126 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2 0.0026961 106.6 3 1 0.5351 0.67316 48.342 3 Median 0.53316 0.66645 1.4181 2 0 Median 0.96392 1.5393 NaN 1 0 Median 134670000 92107000 42559000 103770000 76570000 27201000 30895000 15537000 15358000 1886 1681 1936 6990;6991;6992;6993 10591;10592;10593;10594;10595 10591 5 DNQESSDAELSSSEYIK LLEDTLFPSSKKLKKDNQESSDAELSSSEY QESSDAELSSSEYIKTDLDAMDIKGQESSS K D N I K T 1 0 1 2 0 1 3 0 0 1 1 1 0 0 0 5 0 0 1 0 0 0 17 0 1900.8174 Q96JM3 Q96JM3 622 638 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 2 5.0539E-10 130.2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1887 1690 1937 6994 10596 10596 1 DNQFLAR KHKREFKGAVREIRKDNQFLARMQLSEIME GAVREIRKDNQFLARMQLSEIMERDAERKR K D N A R M 1 1 1 1 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 862.42972 A8KA74;P78316 A8KA74 810 816 NOP14 Nucleolar protein 14 yes no 2 0.022541 89.673 3 0.99686 1.2488 8.9353 3 Plateau 0.99686 1.2488 8.9353 3 0 Plateau NaN NaN NaN 0 0 Median 20293000 11901000 8392300 20293000 11901000 8392300 0 0 0 1888 652 1938 6995;6996;6997 10597;10598;10599 10598 3 DNQLSEVANK VVPSDLYPLVLGFLRDNQLSEVANKFAKAT LGFLRDNQLSEVANKFAKATGATQQDANAS R D N N K F 1 0 2 1 0 1 1 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 10 0 1116.5411 B2RAU8;A0A0A0MRM9;Q14978;S4R349;S4R402;S4R341 B2RAU8 24 33 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 2 0.00021205 92.051 2 2 0.63032 0.85152 24.277 4 Median 0.8754 1.0848 15.14 2 0 Median 0.48773 0.73319 2.0556 2 0 Median 68371000 40654000 27718000 39350000 21594000 17756000 29021000 19059000 9962000 1889 388 1939 6998;6999;7000;7001 10600;10601;10602;10603;10604 10603 5 DNQNFCVPCYEK HRCQQPIGTKSFIPKDNQNFCVPCYEKQHA IPKDNQNFCVPCYEKQHAMQCVQCKKPITT K D N E K Q 0 0 2 1 2 1 1 0 0 0 0 1 0 1 1 0 0 0 1 1 0 0 12 0 1572.6337 I0CE67;Q6I9R8;Q2XQU9;J3KNW4;A0A0A0MSG2;Q14192;Q2TSB7;Q53T40 I0CE67 135 146 FHL2;AAG11 Four and a half LIM domains protein 2 yes no 2 7.1418E-16 172.21 3 0.43236 0.56405 8.7783 3 Median 0.43236 0.56405 8.7783 3 0 Median NaN NaN NaN 0 0 Median 10336000 7674300 2661300 10336000 7674300 2661300 0 0 0 1890 396 1940 7002;7003;7004 10605;10606;10607;10608;10609;10610 10607 6 DNSCVQEIAEK FGIGKGKNLGVSFPKDNSCVQEIAEKQALA SFPKDNSCVQEIAEKQALAVGNKIVLHTEQ K D N E K Q 1 0 1 1 1 1 2 0 0 1 0 1 0 0 0 1 0 0 0 1 0 0 11 0 1291.5714 Q8NG31;H0YCZ2;E9PPJ1 Q8NG31 1230 1240 CASC5 Protein CASC5 yes no 2 0.0041214 56.404 2 0.93873 1.1997 NaN 1 Median 0.93873 1.1997 NaN 1 0 Median NaN NaN NaN 0 0 Median 5285800 2558000 2727800 5285800 2558000 2727800 0 0 0 1891 1656 1941 7005;7006 10611;10612 10612 2 DNSLVLTPSHIK ______________________________ IIKDNSLVLTPSHIKAYMLMTLQGLEYLHQ K D N I K A 0 0 1 1 0 0 0 0 1 1 2 1 0 0 1 2 1 0 0 1 0 0 12 0 1322.7194 D6REC6;D6R9G1;A0A0S2Z3F9;P50613 D6REC6 11 22 CDK7 Cyclin-dependent kinase 7 yes no 2 0.0010483 96.113 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3169000 3169000 0 3169000 3169000 0 0 0 0 1892 450 1942 7007 10613;10614 10614 2 DNSQPVHLESTIAHEIYQK ELELVTCLSSDMFMKDNSQPVHLESTIAHE PVHLESTIAHEIYQKILSPDSFIKDNYGLN K D N Q K I 1 0 1 1 0 2 2 0 2 2 1 1 0 0 1 2 1 0 1 1 0 0 19 0 2208.0811 Q8IZT6;B3KWI2 Q8IZT6 346 364 ASPM Abnormal spindle-like microcephaly-associated protein yes no 3 2.4169E-13 90.379 2 0.96023 1.2356 7.3744 2 Median 0.96023 1.2356 7.3744 2 0 Median NaN NaN NaN 0 0 Median 17598000 8450800 9147400 17598000 8450800 9147400 0 0 0 1893 1631 1943 7008;7009 10615;10616;10617;10618 10617 4 DNTINLIHTFR ITFVLFPRHTNASARDNTINLIHTFRDYLH ASARDNTINLIHTFRDYLHYHIKCSKAYIH R D N F R D 0 1 2 1 0 0 0 0 1 2 1 0 0 1 0 0 2 0 0 0 0 0 11 0 1342.6993 Q53R19;O15144;A0A024R408;H7C3F9 Q53R19 238 248 ARPC2 Actin-related protein 2/3 complex subunit 2 yes no 2 0.01293 79.201 2 1.2559 1.7335 7.4479 2 Median 1.2559 1.7335 7.4479 2 0 Median NaN NaN NaN 0 0 Median 17221000 7935200 9286100 17221000 7935200 9286100 0 0 0 1894 1177 1944 7010;7011 10619;10620 10619 2 DNTSVYHISGK VIPNSNFYVSRTACRDNTSVYHISGKKKTF TACRDNTSVYHISGKKKTFKDVGNLLRSHG R D N G K K 0 0 1 1 0 0 0 1 1 1 0 1 0 0 0 2 1 0 1 1 0 0 11 0 1219.5833 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9J578;C9JVD8 Q9NTJ3 192 202 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 3.2528E-86 253.54 2 2 0.6846 0.99139 3.6331 4 Median 0.73448 0.96016 1.5189 2 0 Median 0.64428 1.0198 0.98833 2 0 Median 493310000 285460000 207850000 294090000 166460000 127630000 199220000 119010000 80215000 1895 1760 1945 7012;7013;7014;7015 10621;10622;10623;10624;10625;10626 10625 6 DNTSVYHISGKK VIPNSNFYVSRTACRDNTSVYHISGKKKTF ACRDNTSVYHISGKKKTFKDVGNLLRSHGI R D N K K K 0 0 1 1 0 0 0 1 1 1 0 2 0 0 0 2 1 0 1 1 0 0 12 1 1347.6783 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9J578;C9JVD8 Q9NTJ3 192 203 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.00049808 118.77 1 0.86036 1.0672 NaN 1 Median 0.86036 1.0672 NaN 1 0 Median NaN NaN NaN 0 0 Median 2266700 1235700 1030900 2266700 1235700 1030900 0 0 0 1896 1760 1946 7016 10627 10627 1 DNVGEEVDAEQLIQEACR NKYMKFFQKAALNVRDNVGEEVDAEQLIQE GEEVDAEQLIQEACRSCLEQAKLLFSDGEK R D N C R S 2 1 1 2 1 2 4 1 0 1 1 0 0 0 0 0 0 0 0 2 0 0 18 0 2073.9273 F2Z2A4;H0Y501;Q9H147;H7C1J2 F2Z2A4 62 79 DNTTIP1 Deoxynucleotidyltransferase terminal-interacting protein 1 yes no 2 1.822E-10 121.92 4 0.52834 0.73121 10.353 2 Median 0.52834 0.73121 10.353 2 0 Median NaN NaN NaN 0 0 Median 8048400 5697100 2351300 8048400 5697100 2351300 0 0 0 1897 1049 1947 7017;7018;7019;7020 10628;10629;10630;10631;10632;10633;10634 10630 7 DNVSSPGGATIHALHVLESGGFR AKMLLHSEQHPGQLKDNVSSPGGATIHALH ATIHALHVLESGGFRSLLINAVEASCIRTR K D N F R S 2 1 1 1 0 0 1 4 2 1 2 0 0 1 1 3 1 0 0 2 0 0 23 0 2320.156 E7D7X9;A0A024R8U9;P32322;Q2TU78;B7Z8T1;J3QKT4;J3KQ22;E2QRB3;Q8TBX0 E7D7X9 229 251 PYCR1;PIG45 Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 1, mitochondrial yes no 3 0.0049559 26.21 1 0.81287 1.0655 NaN 1 Median 0.81287 1.0655 NaN 1 0 Median NaN NaN NaN 0 0 Median 7150700 3268800 3881900 7150700 3268800 3881900 0 0 0 1898 204 1948 7021 10635;10636;10637 10635 3 DNYPQSVPR LQQKAVASEIFKGKKDNYPQSVPRLFISTR IFKGKKDNYPQSVPRLFISTRLGTDEISPR K D N P R L 0 1 1 1 0 1 0 0 0 0 0 0 0 0 2 1 0 0 1 1 0 0 9 0 1074.5094 F5H6E2;B7Z3E5;O00159;D3DTH7 F5H6E2 862 870 MYO1C Unconventional myosin-Ic yes no 2 0.012226 60.118 2 0.72569 0.97914 4.6272 2 Median 0.72569 0.97914 4.6272 2 0 Median NaN NaN NaN 0 0 Median 24213000 14180000 10034000 24213000 14180000 10034000 0 0 0 1899 905 1949 7022;7023 10638;10639;10640 10638 3 DPALNSGVSQKPDPAK TTGAKKRAAPKGTKRDPALNSGVSQKPDPA PALNSGVSQKPDPAKTKNRRKRKPSTSDDS R D P A K T 2 0 1 2 0 1 0 1 0 0 1 2 0 0 3 2 0 0 0 1 0 0 16 1 1622.8264 P11388 P11388 1444 1459 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 3.2263E-53 176.91 8 4 0.88342 1.1662 17.029 12 Median 0.95608 1.1858 19.264 8 0 Median 0.69635 1.102 8.6128 4 0 Median 125610000 62690000 62920000 81912000 38417000 43495000 43698000 24273000 19424000 1900 1256 1950 7024;7025;7026;7027;7028;7029;7030;7031;7032;7033;7034;7035 10641;10642;10643;10644;10645;10646;10647;10648;10649;10650;10651;10652;10653;10654;10655;10656;10657;10658 10648 17 DPANFQYPAESVLAYK FNPIISRKDITGKLKDPANFQYPAESVLAY PANFQYPAESVLAYKEGHLSPDIVAEQKKL K D P Y K E 3 0 1 1 0 1 1 0 0 0 1 1 0 1 2 1 0 0 2 1 0 0 16 0 1811.873 B4DLR8;Q3B792;P15559;H3BNV2;H3BRK3;Q53G81 B4DLR8 62 77 NQO1 NAD(P)H dehydrogenase [quinone] 1 yes no 2 0.0026607 104.24 3 0.30882 0.39717 NaN 1 Median 0.30882 0.39717 NaN 1 0 Median NaN NaN NaN 0 0 Median 6816000 6233800 582250 6816000 6233800 582250 0 0 0 1901 829 1951 7036;7037;7038 10659;10660;10661 10660 2 DPEAFLVQIVSK KVIFSTLLGMKGTQRDPEAFLVQIVSKSQL TQRDPEAFLVQIVSKSQLPSENREGKVLWT R D P S K S 1 0 0 1 0 1 1 0 0 1 1 1 0 1 1 1 0 0 0 2 0 0 12 0 1344.7289 A0A024R932;Q8N0S6 A0A024R932 133 144 C1orf155;CENPL Centromere protein L yes no 2 9.1649E-10 123.8 4 0.61083 0.76604 3.2552 3 Median 0.61083 0.76604 3.2552 3 0 Median NaN NaN NaN 0 0 Median 12129000 9104900 3024500 12129000 9104900 3024500 0 0 0 1902 212 1952 7039;7040;7041;7042 10662;10663;10664;10665;10666 10665 5 DPEDRIPSPLGYAAIPIK ______________________________ DRIPSPLGYAAIPIKFSEKQQASHYLYVRA R D P I K F 2 1 0 2 0 0 1 1 0 3 1 1 0 0 4 1 0 0 1 0 0 0 18 1 1951.0415 Q9Y3A4 Q9Y3A4 12 29 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 3 2.2538E-09 128.45 4 1 0.99334 1.3169 13.429 4 Median 0.93301 1.2574 6.2784 3 0 Median 1.0621 1.647 NaN 1 0 Median 71523000 38133000 33389000 63146000 34172000 28974000 8376500 3961500 4415000 1903 1815 1953 7043;7044;7045;7046;7047 10667;10668;10669;10670;10671 10670 5 DPENFPFVVLGNK LDSWRDEFLIQASPRDPENFPFVVLGNKID PRDPENFPFVVLGNKIDLENRQVATKRAQA R D P N K I 0 0 2 1 0 0 1 1 0 0 1 1 0 2 2 0 0 0 0 2 0 0 13 0 1474.7456 A0A158RFU6;P51149;C9J592 A0A158RFU6 114 126 RAB7A Ras-related protein Rab-7a yes no 2 0.00045637 101.66 1 1 2.0449 2.8251 138 2 Median 0.82123 1.0647 NaN 1 0 Median 5.0919 7.496 NaN 1 0 Median 15455000 5846500 9608300 7611200 4550200 3061000 7843600 1296300 6547200 1904 515 1954 7048;7049 10672;10673;10674 10672 3 DPFAHLPK MDECEQALAAEPKAKDPFAHLPKSTFVLDE AAEPKAKDPFAHLPKSTFVLDEFKRKYSNE K D P P K S 1 0 0 1 0 0 0 0 1 0 1 1 0 1 2 0 0 0 0 0 0 0 8 0 923.4865 Q53YD7;P26641;B4DUP0 Q53YD7 278 285 EEF1G Elongation factor 1-gamma yes no 2 0.0032224 82.671 2 1 0.29907 0.37401 NaN 1 Median 0.29907 0.37401 NaN 1 0 Median NaN NaN NaN 0 0 Median 17588000 14072000 3516600 12259000 8742200 3516600 5329500 5329500 0 1905 1299 1955 7050;7051;7052 10675;10676;10677 10677 3 DPGGGAGAITVASHSK TKVAELLEKYKGPARDPGGGAGAITVASHS PGGGAGAITVASHSKAVVSQAWREEVAAPG R D P S K A 3 0 0 1 0 0 0 4 1 1 0 1 0 0 1 2 1 0 0 1 0 0 16 0 1423.7056 Q6ZRV2;J3KPS2 Q6ZRV2 747 762 FAM83H Protein FAM83H yes no 2 0.00028594 105.03 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1906 1603 1956 7053;7054 10678;10679 10678 2 DPGVPNSAPFK LRKEAKKRGHKKPRKDPGVPNSAPFKEALL KPRKDPGVPNSAPFKEALLREAELRKQRLE K D P F K E 1 0 1 1 0 0 0 1 0 0 0 1 0 1 3 1 0 0 0 1 0 0 11 0 1127.5611 A0A024R2Z6;Q9BVP2;C9JZT7;B4DMU5;C9JYH9 A0A024R2Z6 35 45 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.019341 78.098 2 1 0.67685 0.90139 3.1213 2 Median 0.72366 0.9215 NaN 1 0 Median 0.63307 0.88171 NaN 1 0 Median 13346000 6563200 6782400 9032600 3811200 5221400 4313100 2752100 1561000 1907 95 1957 7055;7056;7057 10680;10681;10682 10682 3 DPIDVNYEK VAYSLLRGGSDDSSKDPIDVNYEKLKTDIK SDDSSKDPIDVNYEKLKTDIKVVDRDSEEA K D P E K L 0 0 1 2 0 0 1 0 0 1 0 1 0 0 1 0 0 0 1 1 0 0 9 0 1091.5135 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 788 796 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.0044739 99.013 3 2 1.0474 1.2798 39.016 5 Median 1.0545 1.2905 3.4119 3 0 Median 0.4265 0.64371 0.83741 2 0 Median 89432000 49681000 39751000 55833000 27251000 28582000 33600000 22431000 11169000 1908 107 1958 7058;7059;7060;7061;7062 10683;10684;10685;10686;10687;10688;10689;10690;10691;10692 10685 10 DPLLASGTDGVGTK GGFAGLFDLKAAGFKDPLLASGTDGVGTKL KDPLLASGTDGVGTKLKIAQLCNKHDTIGQ K D P T K L 1 0 0 2 0 0 0 3 0 0 2 1 0 0 1 1 2 0 0 1 0 0 14 0 1329.6776 Q3B7A7;Q59HH3;P22102;B4DJ93;O14660;Q71VH3 Q3B7A7 486 499 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 0.033131 38.238 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3520700 0 3520700 0 0 0 3520700 0 3520700 1909 1289 1959 7063;7064 10693;10694 10693 2 DPLLLAIIPK ______________________________ EILSRDPLLLAIIPKYLRASMTNLVKMGFP R D P P K Y 1 0 0 1 0 0 0 0 0 2 3 1 0 0 2 0 0 0 0 0 0 0 10 0 1091.6954 B3KPQ5;A8K5Y7;Q9HAV4;H0Y9I3 B3KPQ5 15 24 XPO5 Exportin-5 yes no 2 0.019496 53.166 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1910 619 1960 7065 10695 10695 1 DPLPPLDPQAIKPILK DIRLVAEKMIWWANKDPLPPLDPQAIKPIL PLPPLDPQAIKPILKALLDNTKDKNTVVRA K D P L K A 1 0 0 2 0 1 0 0 0 2 3 2 0 0 5 0 0 0 0 0 0 0 16 1 1754.0342 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2580 2595 PRIC295;GCN1L1 Translational activator GCN1 yes no 3 4.8117E-13 87.363 4 1 0.42208 0.53225 13.535 3 Median 0.42208 0.53225 13.535 3 0 Median NaN NaN NaN 0 0 Median 30351000 20507000 9843800 28137000 20507000 7629300 2214500 0 2214500 1911 1000 1961 7066;7067;7068;7069;7070 10696;10697;10698;10699;10700;10701;10702;10703;10704 10701 9 DPNFVHSGHGGAVAGK STGPVEKAAKPLPFKDPNFVHSGHGGAVAG PNFVHSGHGGAVAGKKNRTWKNLKQILASE K D P G K K 2 0 1 1 0 0 0 4 2 0 0 1 0 1 1 1 0 0 0 2 0 0 16 0 1548.7433 Q6PI98;K7EIY8;M0R3E2 Q6PI98 85 100 INO80C INO80 complex subunit C yes no 3 0.00010018 59.862 2 0.7001 0.87345 NaN 1 Median 0.7001 0.87345 NaN 1 0 Median NaN NaN NaN 0 0 Median 7165500 2696400 4469100 7165500 2696400 4469100 0 0 0 1912 1595 1962 7071;7072 10705;10706;10707 10707 3 DPNLLLSVSK VGHGNAINELKFHPRDPNLLLSVSKDHALR KFHPRDPNLLLSVSKDHALRLWNIQTDTLV R D P S K D 0 0 1 1 0 0 0 0 0 0 3 1 0 0 1 2 0 0 0 1 0 0 10 0 1084.6128 O75530;B4DVW7;E9PJK2 O75530 202 211 EED Polycomb protein EED yes no 2 0.00044584 85.958 3 2 0.99381 1.27 20.906 3 Median 0.99381 1.27 20.906 3 0 Median NaN NaN NaN 0 0 Median 25836000 13852000 11985000 23329000 11345000 11985000 2507100 2507100 0 1913 1203 1963 7073;7074;7075;7076;7077 10708;10709;10710;10711;10712;10713;10714 10711 7 DPNTYFIVGTAMVYPEEAEPK QNEYALSLVSCKLGKDPNTYFIVGTAMVYP IVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ K D P P K Q 2 0 1 1 0 0 3 1 0 1 0 1 1 1 3 0 2 0 2 2 0 0 21 0 2370.109 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5;F5H198 Q16531 824 844 DDB1 DNA damage-binding protein 1 yes no 2 0.00037467 40.941 1 0.71922 1.0937 NaN 1 Median NaN NaN NaN 0 0 Median 0.71922 1.0937 NaN 1 0 Median 19513000 10407000 9105500 0 0 0 19513000 10407000 9105500 1914 1520 1964 7078 10715 10715 694 1 DPPASASQVTGIR TPRRSKSDGEAKRSRDPPASASQVTGIRAE SRDPPASASQVTGIRAEPSPSPRITRKSTR R D P I R A 2 1 0 1 0 1 0 1 0 1 0 0 0 0 2 2 1 0 0 1 0 0 13 0 1297.6626 I6L9H2;K7ER10;K7ELB1 I6L9H2 31 43 DNMT1 DNA (cytosine-5)-methyltransferase yes no 2 0.0063633 58.676 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1915 1129 1965 7079 10716 10716 1 DPPLLSQFSGGQYPLNGILGGSR NYSQYPSANPGSNLKDPPLLSQFSGGQYPL SGGQYPLNGILGGSRQPSSPSHNTNLRAGS K D P S R Q 0 1 1 1 0 2 0 5 0 1 4 0 0 1 3 3 0 0 1 0 0 0 23 0 2372.2125 J3QK86;J3KPG5;F8VU39;Q9UIF9;F8VWQ3;B7Z8F7 J3QK86 107 129 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 2.3679E-05 131.72 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 470600 470600 0 470600 470600 0 0 0 0 1916 1062 1966 7080 10717 10717 1 DPQFAEDYIFK LRDLTQNTVVSINFKDPQFAEDYIFKAVML INFKDPQFAEDYIFKAVMLPGARKPAAVLK K D P F K A 1 0 0 2 0 1 1 0 0 1 0 1 0 2 1 0 0 0 1 0 0 0 11 0 1371.6347 B4E0B9;B4DZC3;B3KMC9;Q9H0D6 B4E0B9 681 691 XRN2 5-3 exoribonuclease 2 yes no 2 0.021635 82.029 2 0.67691 0.88734 NaN 1 Median 0.67691 0.88734 NaN 1 0 Median NaN NaN NaN 0 0 Median 2816500 2023400 793060 2816500 2023400 793060 0 0 0 1917 754 1967 7081;7082 10718;10719 10718 2 DPQGPGPGLEAFVSAAK RKEELTGVRFKAQLKDPQGPGPGLEAFVSA QGPGPGLEAFVSAAKKLPREDVYDVVEGYI K D P A K K 3 0 0 1 0 1 1 3 0 0 1 1 0 1 3 1 0 0 0 1 0 0 17 0 1639.8206 O60287 O60287 41 57 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.005231 46.481 1 0.67339 0.85398 NaN 1 Median 0.67339 0.85398 NaN 1 0 Median NaN NaN NaN 0 0 Median 5922000 3803000 2119000 5922000 3803000 2119000 0 0 0 1918 1190 1968 7083 10720 10720 1 DPSFRPTAK FTKSFKEFIDACLNKDPSFRPTAKELLKHK DACLNKDPSFRPTAKELLKHKFIVKNSKKT K D P A K E 1 1 0 1 0 0 0 0 0 0 0 1 0 1 2 1 1 0 0 0 0 0 9 1 1017.5243 Q9NWX4;Q8NBY1;B4E0Y9;Q9P289;Q499L9;Q96SR7 Q9NWX4 135 143 STK26;MST4 Serine/threonine-protein kinase 26 yes no 2 0.037673 92.051 1 0.26748 0.36313 NaN 1 Median 0.26748 0.36313 NaN 1 0 Median NaN NaN NaN 0 0 Median 5353200 3855000 1498200 5353200 3855000 1498200 0 0 0 1919 886 1969 7084 10721 10721 1 DPSLPVASSSSSSSK GSKSASRTHRGSHRKDPSLPVASSSSSSSK DPSLPVASSSSSSSKRGKKMCSDGEKAEKR K D P S K R 1 0 0 1 0 0 0 0 0 0 1 1 0 0 2 8 0 0 0 1 0 0 15 0 1434.6838 D2CPI8 D2CPI8 164 178 yes yes 2 1.3578E-05 76.228 2 2 0.71728 1.2348 11.421 4 Linear 0.86037 1.0907 17.668 2 0 Median 0.67137 1.0027 2.9015 2 0 Median 38608000 19632000 18976000 20796000 9197600 11598000 17812000 10435000 7377200 1920 976 1970 7085;7086;7087;7088 10722;10723;10724;10725;10726;10727;10728 10724 7 DPSLSDSSTVGLQR FSINSVASTYSEFAKDPSLSDSSTVGLQRE KDPSLSDSSTVGLQRELSKASKSDATSGIL K D P Q R E 0 1 0 2 0 1 0 1 0 0 2 0 0 0 1 4 1 0 0 1 0 0 14 0 1460.7107 A0A024RC67;O43663 A0A024RC67 585 598 PRC1 Protein regulator of cytokinesis 1 yes no 2 0.00010931 111.86 1 2 0.58887 0.77271 2.6366 2 Median NaN NaN NaN 0 0 Median 0.58887 0.77271 2.6366 2 0 Median 10113000 5813200 4300200 0 0 0 10113000 5813200 4300200 1921 288 1971 7089;7090;7091 10729;10730;10731 10729 3 DPSQQELPR LKMVVPGLDGAQIPRDPSQQELPRLLSAAC GAQIPRDPSQQELPRLLSAACRLQLNGNLQ R D P P R L 0 1 0 1 0 2 1 0 0 0 1 0 0 0 2 1 0 0 0 0 0 0 9 0 1068.52 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1172 1180 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 5.0792E-05 136.21 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2792800 0 2792800 0 0 0 2792800 0 2792800 1922 486 1972 7092 10732 10732 1 DPTEHIPEIILNNFTTR MSSVRLRKEIKRRGKDPTEHIPEIILNNFT TEHIPEIILNNFTTRLGHSIGRMFASLFPH K D P T R L 0 1 2 1 0 0 2 0 1 3 1 0 0 1 2 0 3 0 0 0 0 0 17 0 2009.0218 Q9H9Y2 Q9H9Y2 238 254 RPF1 Ribosome production factor 1 yes yes 3 3.0567E-05 97.904 3 0.76035 1.0155 6.4038 3 Median 0.76035 1.0155 6.4038 3 0 Median NaN NaN NaN 0 0 Median 35658000 20344000 15314000 35658000 20344000 15314000 0 0 0 1923 1747 1973 7093;7094;7095 10733;10734;10735;10736;10737 10735 5 DPVLAPAVGADLLDYCLAR AVDELDTVLLHTLQRDPVLAPAVGADLLDY APAVGADLLDYCLARRTQAALSIAALLLQE R D P A R R 4 1 0 3 1 0 0 1 0 0 4 0 0 0 2 0 0 0 1 2 0 0 19 0 2028.035 O60287 O60287 1207 1225 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.048291 42.789 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2015000 2015000 0 2015000 2015000 0 0 0 0 1924 1190 1974 7096 10738 10738 1 DPVTTGTPQPPQR FRKEAGDFYYMAGNKDPVTTGTPQPPQRRP NKDPVTTGTPQPPQRRPSGPVQSYGPPQGS K D P Q R R 0 1 0 1 0 2 0 1 0 0 0 0 0 0 4 0 3 0 0 1 0 0 13 0 1392.6997 W5ZR30;Q9UGU0;I3L1M7 W5ZR30 97 109 TCF20 Transcription factor 20 yes no 2 0.0038924 56.548 2 1.4734 1.8925 NaN 1 Median NaN NaN NaN 0 0 Median 1.4734 1.8925 NaN 1 0 Median 3469800 1062800 2407000 0 0 0 3469800 1062800 2407000 1925 1783 1975 7097;7098 10739;10740 10739 2 DPYTGQQISLFQAMQK HHKLLSAERAVTGYKDPYTGQQISLFQAMQ PYTGQQISLFQAMQKGLIVREHGIRLLEAQ K D P Q K G 1 0 0 1 0 4 0 1 0 1 1 1 1 1 1 1 1 0 1 0 0 0 16 0 1853.8982 Q15149;D3DWL0 Q15149 2916 2931 PLEC;PLEC1 Plectin yes no 2 0.051257 76.326 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1926 1507 1976 7099 10741 10741 1 DQAEEEPNRIPSR KEEDVVTPKPGKRKRDQAEEEPNRIPSRSL KRDQAEEEPNRIPSRSLRRTKLNQESTAPK R D Q S R S 1 2 1 1 0 1 3 0 0 1 0 0 0 0 2 1 0 0 0 0 0 0 13 1 1539.7277 Q14676;B4DYH4 Q14676 1867 1879 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 3 0.0045685 31.827 2 0.74904 0.99407 6.3198 2 Median NaN NaN NaN 0 0 Median 0.74904 0.99407 6.3198 2 0 Median 8372500 4930800 3441800 0 0 0 8372500 4930800 3441800 1927 1491 1977 7100;7101 10742;10743;10744;10745 10744 4 DQCILITGESGAGK ALSDEAYRSLRDQDKDQCILITGESGAGKT KDQCILITGESGAGKTEASKLVMSYVAAVC K D Q G K T 1 0 0 1 1 1 1 3 0 2 1 1 0 0 0 1 1 0 0 0 0 0 14 0 1447.6977 E9PDF6;B0I1S9;O43795;E7EQD9;Q05CR5;C9JYW1;C9JUP5 E9PDF6 101 114 MYO1B Unconventional myosin-Ib yes no 2 0.042213 71.888 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1588300 0 1588300 1588300 0 1588300 0 0 0 1928 665 1978 7102 10746 10746 1 DQDLTIPESSTVK AVDAVEEFLRRAKGKDQDLTIPESSTVKGM GKDQDLTIPESSTVKGMMAGPMAAFKWQPT K D Q V K G 0 0 0 2 0 1 1 0 0 1 1 1 0 0 1 2 2 0 0 1 0 0 13 0 1431.7093 K7EQB2 K7EQB2 97 109 GLYR1 yes yes 2 0.046535 40.154 1 0.44092 0.61372 NaN 1 Median NaN NaN NaN 0 0 Median 0.44092 0.61372 NaN 1 0 Median 5730700 3874000 1856600 0 0 0 5730700 3874000 1856600 1929 1151 1979 7103 10747 10747 1 DQEALEAVK NKQAEVKKMDSGYRKDQEALEAVKRLKEKL DSGYRKDQEALEAVKRLKEKLEAEMKKLNY K D Q V K R 2 0 0 1 0 1 2 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1001.5029 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 447 455 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 1;2 8.199E-05 133.23 7 2 0.63132 0.97247 11.823 5 Median 0.64127 0.83655 12.427 3 0 Median 0.62363 0.99609 3.393 2 0 Median 292760000 207500000 85264000 202220000 151360000 50857000 90548000 56141000 34407000 1930 50 1980 7104;7105;7106;7107;7108;7109;7110;7111;7112 10748;10749;10750;10751;10752;10753;10754;10755;10756;10757;10758;10759;10760 10751 13 DQEALEAVKR NKQAEVKKMDSGYRKDQEALEAVKRLKEKL SGYRKDQEALEAVKRLKEKLEAEMKKLNYE K D Q K R L 2 1 0 1 0 1 2 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 10 1 1157.6041 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 447 456 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 1.5313E-11 162.49 3 2 0.60911 0.80187 32.985 4 Median 0.63311 0.84266 14.046 3 0 Median 0.29275 0.46604 NaN 1 0 Median 67106000 44260000 22847000 42108000 23046000 19062000 24999000 21214000 3785100 1931 50 1981 7113;7114;7115;7116;7117 10761;10762;10763;10764;10765;10766;10767 10763 7 DQELYFFHELSPGSCFFLPK FQEEAKNRDHRKIGRDQELYFFHELSPGSC FFHELSPGSCFFLPKGAYIYNALIEFIRSE R D Q P K G 0 0 0 1 1 1 2 1 1 0 3 1 0 4 2 2 0 0 1 0 0 0 20 0 2460.146 Q5M7Z9;Q53GX7;P26639;B4DKZ9;B3KTN2;B2RDX5 Q5M7Z9 329 348 TARS Threonine--tRNA ligase, cytoplasmic yes no 3 1.5011E-05 91.64 3 0.51162 0.63938 16.29 3 Median 0.51162 0.63938 16.29 3 0 Median NaN NaN NaN 0 0 Median 5624600 3814300 1810300 5624600 3814300 1810300 0 0 0 1932 1298 1982 7118;7119;7120 10768;10769;10770;10771;10772 10771 5 DQFGFINYEVGDSK YNITPLRRATVECVKDQFGFINYEVGDSKK KDQFGFINYEVGDSKKLFFHVKEVQDGIEL K D Q S K K 0 0 1 2 0 1 1 2 0 1 0 1 0 2 0 1 0 0 1 1 0 0 14 0 1617.7311 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0;Q9UG93;Q8WU01;Q9UG12 Q9GZV0 652 665 CSDE1;UNR;DKFZp586J0620;DKFZp566C233 Cold shock domain-containing protein E1 yes no 2 0.031418 79.283 1 0.48961 0.61569 NaN 1 Median 0.48961 0.61569 NaN 1 0 Median NaN NaN NaN 0 0 Median 6171900 3956500 2215500 6171900 3956500 2215500 0 0 0 1933 31 1983 7121 10773 10773 0 DQFLDTLQAHGHDVNSFVR VLSGDQLEAAARDTRDQFLDTLQAHGHDVN DTLQAHGHDVNSFVRSRVLQLFTRIVQQKA R D Q V R S 1 1 1 3 0 2 0 1 2 0 2 0 0 2 0 1 1 0 0 2 0 0 19 0 2198.0505 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 363 381 NCAPD2 Condensin complex subunit 1 yes no 3;4 3.6583E-77 195.27 6 2 0.66479 0.90466 10.722 8 Median 0.66972 0.91402 8.772 6 0 Median 0.46454 0.76323 0.67731 2 0 Median 749140000 474480000 274670000 457080000 274940000 182140000 292070000 199540000 92528000 1934 757 1984 7122;7123;7124;7125;7126;7127;7128;7129 10774;10775;10776;10777;10778;10779;10780;10781;10782;10783;10784;10785;10786;10787;10788;10789 10785 16 DQGTYEDYVEGLR FEHFLPMLQTVAKNKDQGTYEDYVEGLRVF NKDQGTYEDYVEGLRVFDKEGNGTVMGAEI K D Q L R V 0 1 0 2 0 1 2 2 0 0 1 0 0 0 0 0 1 0 2 1 0 0 13 0 1543.6791 F8W1R7;J3KND3;G8JLA2;G3V1V0;B7Z6Z4;P60660;G3V1Y7;Q6IBG5;F8VPF3;F8VZU9;F8W180;H0YI43 F8W1R7 82 94 MYL6 Myosin light polypeptide 6 yes no 2 2.9753E-20 187.31 4 2 0.97531 1.3138 71.674 6 Median 0.89506 1.1955 10.783 4 0 Median 3.4599 4.8613 3.6194 2 0 Median 98388000 45722000 52667000 77990000 40908000 37081000 20399000 4813200 15586000 1935 915 1985 7130;7131;7132;7133;7134;7135 10790;10791;10792;10793;10794;10795;10796;10797 10792 8 DQIAQLEASLAAAK LGDKKSLEGDLEDLKDQIAQLEASLAAAKK KDQIAQLEASLAAAKKQLADETLLKVDLEN K D Q A K K 5 0 0 1 0 2 1 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 14 0 1427.762 P20700;E9PBF6;A0A0D9SFE5 P20700 168 181 LMNB1 Lamin-B1 yes no 2 1.2824E-06 129.74 3 1 1.5456 2.0063 15.32 3 Median 1.4899 1.9069 7.1839 2 0 Median 1.6547 2.4493 NaN 1 0 Median 39942000 23111000 16831000 29816000 18185000 11631000 10127000 4926500 5200100 1936 1285 1986 7136;7137;7138;7139 10798;10799;10800;10801;10802;10803 10799 6 DQIVDLTVGNNK QKNYSPYYNTIDDLKDQIVDLTVGNNKTLL DLKDQIVDLTVGNNKTLLDIDNTRMTLDDF K D Q N K T 0 0 2 2 0 1 0 1 0 1 1 1 0 0 0 0 1 0 0 2 0 0 12 0 1314.6779 CON__P35527;P35527 CON__P35527 213 224 KRT9 Keratin, type I cytoskeletal 9 yes no 2 1.2106E-87 252.16 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 571390000 571390000 0 197610000 197610000 0 373780000 373780000 0 + 1937 963 1987 7140;7141;7142;7143 10804;10805;10806;10807;10808 10804 5 DQIYDIFQK FVLDEADEMLSRGFKDQIYDIFQKLNSNTQ LSRGFKDQIYDIFQKLNSNTQVVLLSATMP K D Q Q K L 0 0 0 2 0 2 0 0 0 2 0 1 0 1 0 0 0 0 1 0 0 0 9 0 1168.5764 A8K7F6;P60842;A8K088;J3KT12;J3KTB5;Q59F68;J3QS69;B4DNH2;J3QR64;J3QL43;J3KSZ0;J3KTN0;B4DKP9 A8K7F6 194 202 EIF4A1 Eukaryotic initiation factor 4A-I yes no 2 9.3596E-06 162.49 4 1 0.31384 0.39139 111 5 Median 0.30939 0.39092 7.8875 4 0 Median 3.1741 4.792 NaN 1 0 Median 176590000 126500000 50089000 160730000 122250000 38481000 15861000 4252700 11608000 1938 634 1988 7144;7145;7146;7147;7148 10809;10810;10811;10812;10813;10814;10815;10816;10817 10813 9 DQLALAIGK LSGLPAGPDREGSLKDQLALAIGKLGENMI REGSLKDQLALAIGKLGENMILKRAAWVKV K D Q G K L 2 0 0 1 0 1 0 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 9 0 927.53893 B4DHY8;E5KS95;P43897;C9JT21 B4DHY8 144 152 TSFM Elongation factor Ts, mitochondrial;Elongation factor Ts yes no 2 0.022517 53.878 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1939 809 1989 7149 10818 10818 1 DQLLLGPTYATPK KAYLRDFMYVSQDPKDQLLLGPTYATPKVL PKDQLLLGPTYATPKVLEKAGLTMNDIDAF K D Q P K V 1 0 0 1 0 1 0 1 0 0 3 1 0 0 2 0 2 0 1 0 0 0 13 0 1415.766 P55084;B4DY96;B5MD38;F5GZQ3;B4DDC9 P55084 349 361 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 0.00046326 101.39 3 2 0.6467 0.82796 24.566 5 Median 0.63968 0.81613 5.2413 3 0 Median 0.82652 1.2358 7.7462 2 0 Median 47791000 28877000 18914000 29335000 18060000 11276000 18455000 10817000 7638100 1940 1378 1990 7150;7151;7152;7153;7154 10819;10820;10821;10822;10823;10824;10825 10819 7 DQLLPEK VSGQIENTMFINKMKDQLLPEKGCGLAPPH TMFINKMKDQLLPEKGCGLAPPHYPTLLTV K D Q E K G 0 0 0 1 0 1 1 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 7 0 841.45453 D3DUR9;Q8TF68;B4DQU6;F5H8L7;E9PHB3;F5H105;F5H0D6;F5H3Z9;A5Z1Y2;F5GYZ1;F5H6N8;B1NY96 D3DUR9 34 40 ZNF384;TCF3-ZNF384 fusion Zinc finger protein 384 yes no 2 0.019854 101.28 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1941 983 1991 7155 10826 10826 1 DQLQEQLQALK EQQKATEKERVAQEKDQLQEQLQALKESLK AQEKDQLQEQLQALKESLKVTKGSLEEEKR K D Q L K E 1 0 0 1 0 4 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1312.6987 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;F5H4J1;A8K394;Q4LE64;Q14980 Q4LE64 698 708 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 4.1933E-17 191.45 4 2 0.67281 0.84302 27.528 6 Median 0.71298 0.87823 5.1635 4 0 Median 0.32688 0.51435 3.961 2 0 Median 154080000 99396000 54682000 93249000 55288000 37961000 60829000 44108000 16721000 1942 148;1499;590 1992 7156;7157;7158;7159;7160;7161 10827;10828;10829;10830;10831;10832;10833;10834;10835;10836;10837;10838;10839;10840 10835 14 DQLQTFSEEHPVLLTEAPLNPR DWNDMERIWQYVYSKDQLQTFSEEHPVLLT EEHPVLLTEAPLNPRKNRERAAEVFFETFN K D Q P R K 1 1 1 1 0 2 3 0 1 0 4 0 0 1 3 1 2 0 0 1 0 0 22 0 2533.2813 B4DMT4;B4DXP9;R4GMT0;B4DM97;P61163;A0A1B0GVS3 B4DMT4 23 44 ACTR1A Alpha-centractin yes no 3 1.8214E-05 79.383 4 0.68623 0.91954 4.2836 3 Plateau 0.68623 0.91954 4.2836 3 0 Plateau NaN NaN NaN 0 0 Median 37074000 25364000 11711000 37074000 25364000 11711000 0 0 0 1943 831 1993 7162;7163;7164;7165 10841;10842;10843;10844;10845 10845 5 DQLSVLENGVDIVVGTPGR PKLRELLIIGGVAARDQLSVLENGVDIVVG VLENGVDIVVGTPGRLDDLVSTGKLNLSQV R D Q G R L 0 1 1 2 0 1 1 3 0 1 2 0 0 0 1 1 1 0 0 4 0 0 19 0 1967.0324 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 250 268 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 1.0096E-23 142.54 3 0.80747 1.0621 15.319 3 Median 0.80747 1.0621 15.319 3 0 Median NaN NaN NaN 0 0 Median 18314000 10699000 7615100 18314000 10699000 7615100 0 0 0 1944 378 1994 7166;7167;7168 10846;10847;10848;10849 10848 4 DQLVYPLLAFTR ANIYKDLQKLSRLFKDQLVYPLLAFTRQAL LFKDQLVYPLLAFTRQALNLPDVFGLVILP K D Q T R Q 1 1 0 1 0 1 0 0 0 0 3 0 0 1 1 0 1 0 1 1 0 0 12 0 1434.7871 Q5HYB3;A8K7F7;Q9Y3I1 Q5HYB3 21 32 DKFZp686B08113;FBXO7 F-box only protein 7 yes no 2 0.0023935 63.283 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3150800 3150800 0 3150800 3150800 0 0 0 0 1945 635 1995 7169;7170 10850;10851 10850 2 DQMQQQLNDYEQLLDVK RRMLTDKEREMAEIRDQMQQQLNDYEQLLD MQQQLNDYEQLLDVKLALDMEISAYRKLLE R D Q V K L 0 0 1 3 0 5 1 0 0 0 3 1 1 0 0 0 0 0 1 1 0 0 17 0 2106.9892 P20700;E9PBF6;B4DZT3 P20700 351 367 LMNB1 Lamin-B1 yes no 2 0.037072 92.151 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 345930 345930 0 345930 345930 0 0 0 0 1946 1285 1996 7171 10852 10852 1 DQNIFVSR AKRERFELLKHQKLKDQNIFVSRTRLCLHN LKHQKLKDQNIFVSRTRLCLHNLPKAVDDK K D Q S R T 0 1 1 1 0 1 0 0 0 1 0 0 0 1 0 1 0 0 0 1 0 0 8 0 977.49304 A0A024R753;Q9NW13 A0A024R753 479 486 RBM28 RNA-binding protein 28 yes no 2 0.0065047 120.46 3 2 0.69193 0.97287 5.0193 2 Median NaN NaN NaN 0 0 Median 0.69193 0.97287 5.0193 2 0 Median 32611000 24053000 8557600 13051000 13051000 0 19559000 11002000 8557600 1947 169 1997 7172;7173;7174;7175;7176 10853;10854;10855;10856;10857 10855 5 DQNILLGTTYR NNVSSYLSKNILAFRDQNILLGTTYRIIAN LAFRDQNILLGTTYRIIANALSSEPACLAE R D Q Y R I 0 1 1 1 0 1 0 1 0 1 2 0 0 0 0 0 2 0 1 0 0 0 11 0 1292.6725 P78527 P78527 3325 3335 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 2.5324E-07 148.91 3 2 0.48178 0.654 43.46 5 Median 0.44088 0.58741 8.5741 3 0 Median 0.8544 1.3082 1.2511 2 0 Median 81876000 51161000 30715000 43006000 30134000 12872000 38869000 21027000 17843000 1948 1427 1998 7177;7178;7179;7180;7181 10858;10859;10860;10861;10862;10863;10864 10859 7 DQNYPGAIAIHHPNVAEK ANPAFNLFWAGWDRRDQNYPGAIAIHHPNV YPGAIAIHHPNVAEKRISNSTSPTSFVAWG R D Q E K R 3 0 2 1 0 1 1 1 2 2 0 1 0 0 2 0 0 0 1 1 0 0 18 0 1972.9755 CON__P15636 CON__P15636 343 360 yes yes 2;3;4 1.088E-73 221.34 13 5 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9914800000 9914800000 0 8934100000 8934100000 0 980650000 980650000 0 + 1949 962 1999 7182;7183;7184;7185;7186;7187;7188;7189;7190;7191;7192;7193;7194;7195;7196;7197;7198;7199 10865;10866;10867;10868;10869;10870;10871;10872;10873;10874;10875;10876;10877;10878;10879;10880;10881;10882;10883;10884;10885;10886;10887;10888;10889;10890;10891 10872 27 DQNYPGAIAIHHPNVAEKR ANPAFNLFWAGWDRRDQNYPGAIAIHHPNV PGAIAIHHPNVAEKRISNSTSPTSFVAWGG R D Q K R I 3 1 2 1 0 1 1 1 2 2 0 1 0 0 2 0 0 0 1 1 0 0 19 1 2129.0766 CON__P15636 CON__P15636 343 361 yes yes 3;4 4.8125E-16 128.26 5 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 314530000 314530000 0 314530000 314530000 0 0 0 0 + 1950 962 2000 7200;7201;7202;7203;7204 10892;10893;10894;10895;10896 10896 5 DQSAVVVQGLPEGVAFK GKSTVVPVPYEKMLRDQSAVVVQGLPEGVA SAVVVQGLPEGVAFKHPENYDLATLKWILE R D Q F K H 2 0 0 1 0 2 1 2 0 0 1 1 0 1 1 1 0 0 0 4 0 0 17 0 1742.9203 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;X5D7Q9;A0A0A0VEB4 X5D2J9 144 160 GTF2I;GTF2I-RARA General transcription factor II-I yes no 2 6.7922E-10 93.011 1 2 1.7142 2.5226 55.113 3 Median 0.80365 1.016 NaN 1 0 Median 1.7614 2.6318 5.9916 2 0 Median 29742000 11647000 18095000 8223800 4326900 3897000 21519000 7320500 14198000 1951 651 2001 7205;7206;7207 10897;10898;10899 10897 3 DQTKPTPLILDEQGR NLHAMGIAPPKVELKDQTKPTPLILDEQGR DQTKPTPLILDEQGRTVDATGKEIELTHRM K D Q G R T 0 1 0 2 0 2 1 1 0 1 2 1 0 0 2 0 2 0 0 0 0 0 15 1 1709.8948 B4DLS8;Q53GV6;B2R791;O43395;B4DM28 B4DLS8 235 249 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes no 3 0.049196 43.042 1 0.77532 1.0743 NaN 1 Median 0.77532 1.0743 NaN 1 0 Median NaN NaN NaN 0 0 Median 2481100 1403100 1078000 2481100 1403100 1078000 0 0 0 1952 703 2002 7208 10900 10900 1 DQTPDENDQVIVK NELQNLTAAEVVVPRDQTPDENDQVIVKII PRDQTPDENDQVIVKIIGHFYASQMAQRKI R D Q V K I 0 0 1 3 0 2 1 0 0 1 0 1 0 0 1 0 1 0 0 2 0 0 13 0 1499.7104 Q9NZI8;D3DTW3 Q9NZI8 526 538 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 2 3.7092E-08 146.71 2 1 0.69681 0.88905 0.69518 2 Median 0.69681 0.88905 0.69518 2 0 Median NaN NaN NaN 0 0 Median 14306000 4445000 9861400 8973600 4445000 4528600 5332800 0 5332800 1953 1772 2003 7209;7210;7211 10901;10902;10903;10904;10905 10904 5 DQTPDENDQVVVK NELQNLSSAEVVVPRDQTPDENDQVVVKIT PRDQTPDENDQVVVKITGHFYACQVAQRKI R D Q V K I 0 0 1 3 0 2 1 0 0 0 0 1 0 0 1 0 1 0 0 3 0 0 13 0 1485.6947 O00425 O00425 526 538 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 0.00020822 77.64 3 1 0.6516 0.82609 116.39 3 Median 0.57487 0.72863 17.753 2 0 Median 3.6582 5.4065 NaN 1 0 Median 26838000 16935000 9902200 20459000 15488000 4971600 6378200 1447600 4930600 1954 1167 2004 7212;7213;7214;7215 10906;10907;10908;10909 10908 4 DQVANSAFVER KENQKHIYYITGETKDQVANSAFVERLRKH GETKDQVANSAFVERLRKHGLEVIYMIEPI K D Q E R L 2 1 1 1 0 1 1 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 11 0 1234.5942 K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q96HX7 K9JA46 500 510 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 2 0.00013143 128.81 2 0.32345 0.44788 4.9065 2 Median 0.32345 0.44788 4.9065 2 0 Median NaN NaN NaN 0 0 Median 11289000 7915500 3373300 11289000 7915500 3373300 0 0 0 1955 1155 2005 7216;7217 10910;10911 10911 2 DQVDIAVQELLQLK QGEVVRKLKTEKAPKDQVDIAVQELLQLKA KDQVDIAVQELLQLKAQYKSLIGVEYKPVS K D Q L K A 1 0 0 2 0 3 1 0 0 1 3 1 0 0 0 0 0 0 0 2 0 0 14 0 1610.8879 P07814;V9GYZ6;Q3KQZ8;B4DKX5 P07814 926 939 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 1.6364E-45 184.03 4 0.63534 0.82354 14.596 4 Median 0.63534 0.82354 14.596 4 0 Median NaN NaN NaN 0 0 Median 43903000 26090000 17813000 43903000 26090000 17813000 0 0 0 1956 1242 2006 7218;7219;7220;7221 10912;10913;10914;10915;10916;10917;10918 10918 7 DQVFIFLK MGLLQFGPTEKFQDKDQVFIFLKKNAVIVD TEKFQDKDQVFIFLKKNAVIVDTTICDPHY K D Q L K K 0 0 0 1 0 1 0 0 0 1 1 1 0 2 0 0 0 0 0 1 0 0 8 0 1008.5644 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 990 997 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.029523 82.305 3 0.81472 1.0357 14.078 3 Median 0.81472 1.0357 14.078 3 0 Median NaN NaN NaN 0 0 Median 14539000 7533500 7005900 14539000 7533500 7005900 0 0 0 1957 1457 2007 7222;7223;7224 10919;10920;10921;10922 10919 4 DQVTAQEIFQDNHEDGPTAK SKIKTLFPLIEAKKKDQVTAQEIFQDNHED QEIFQDNHEDGPTAKKLKTEQGGAHFSVSS K D Q A K K 2 0 1 3 0 3 2 1 1 1 0 1 0 1 1 0 2 0 0 1 0 0 20 0 2242.0138 P13010;Q53T09 P13010 546 565 XRCC5 X-ray repair cross-complementing protein 5 yes no 2;3 1.2512E-162 321.82 10 3 0.56391 0.74506 10.662 12 Median 0.56473 0.73572 7.0282 9 0 Median 0.55961 0.89116 1.5787 3 0 Plateau 723300000 456490000 266810000 526770000 335330000 191440000 196530000 121160000 75363000 1958 1262 2008 7225;7226;7227;7228;7229;7230;7231;7232;7233;7234;7235;7236;7237 10923;10924;10925;10926;10927;10928;10929;10930;10931;10932;10933;10934;10935;10936;10937;10938;10939;10940;10941;10942;10943;10944;10945;10946;10947 10932 25 DQVTAQEIFQDNHEDGPTAKK SKIKTLFPLIEAKKKDQVTAQEIFQDNHED EIFQDNHEDGPTAKKLKTEQGGAHFSVSSL K D Q K K L 2 0 1 3 0 3 2 1 1 1 0 2 0 1 1 0 2 0 0 1 0 0 21 1 2370.1088 P13010;Q53T09 P13010 546 566 XRCC5 X-ray repair cross-complementing protein 5 yes no 3 5.0319E-26 141.6 4 1 0.53275 0.77195 21.717 5 Median 0.71381 0.88209 24.505 4 0 Linear 0.53275 0.77195 NaN 1 0 Median 40615000 25387000 15229000 37120000 23153000 13967000 3495200 2233900 1261300 1959 1262 2009 7238;7239;7240;7241;7242 10948;10949;10950;10951;10952;10953;10954;10955;10956 10951 9 DQVVILHHMLSK ERQRSLFVVVGDRGKDQVVILHHMLSKATV RGKDQVVILHHMLSKATVKARPSVLWCYKK K D Q S K A 0 0 0 1 0 1 0 0 2 1 2 1 1 0 0 1 0 0 0 2 0 0 12 0 1418.7704 Q05CW7;E9PMU0;E9PJN6;Q9H0A0 Q9H0A0 35 46 NAT10 N-acetyltransferase 10 no no 3 0.0027685 77.593 4 0.75465 0.94391 19.948 4 Median 0.75465 0.94391 19.948 4 0 Median NaN NaN NaN 0 0 Median 46684000 25860000 20823000 46684000 25860000 20823000 0 0 0 1960 1730;1443 2010;2011 7243;7244;7245;7246 10957;10958;10959;10960;10961 10960 650 5 DQVYPQYVIEYTEDK VDTRSNPSVFVIFQKDQVYPQYVIEYTEDK DQVYPQYVIEYTEDKACVIS__________ K D Q D K A 0 0 0 2 0 2 2 0 0 1 0 1 0 0 1 0 1 0 3 2 0 0 15 0 1888.8731 Q7Z2W4;A8K9U6;C9J6P4 Q7Z2W4 883 897 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 0.019369 29.55 1 0.70314 0.87449 NaN 1 Median 0.70314 0.87449 NaN 1 0 Median NaN NaN NaN 0 0 Median 8062900 4676900 3386000 8062900 4676900 3386000 0 0 0 1961 1613 2012 7247 10962 10962 1 DQYLGHLQQYVAAYQQLTSEK VELKSQEAQSLQQQRDQYLGHLQQYVAAYQ LQQYVAAYQQLTSEKEVLHNQLLLQTQLVD R D Q E K E 2 0 0 1 0 5 1 1 1 0 3 1 0 0 0 1 1 0 3 1 0 0 21 0 2482.2129 Q08379 Q08379 613 633 GOLGA2 Golgin subfamily A member 2 yes yes 3 0.0053527 64.349 2 0.70052 0.90352 NaN 1 Median 0.70052 0.90352 NaN 1 0 Median NaN NaN NaN 0 0 Median 6007600 4071800 1935800 6007600 4071800 1935800 0 0 0 1962 1449 2013 7248;7249 10963;10964 10963 2 DRCPLPCIPTLIGTPVK LKCRDCRVVSHPECRDRCPLPCIPTLIGTP CPLPCIPTLIGTPVKIGEGMLADFVSQTSP R D R V K I 0 1 0 1 2 0 0 1 0 2 2 1 0 0 4 0 2 0 0 1 0 0 17 1 1936.0274 B2RE34;A0A024R136;Q9H0H5 B2RE34 329 345 RACGAP1 Rac GTPase-activating protein 1 yes no 3 0.0033866 60.334 1 1.3664 1.8828 NaN 1 Median 1.3664 1.8828 NaN 1 0 Median NaN NaN NaN 0 0 Median 2640700 1002300 1638400 2640700 1002300 1638400 0 0 0 1963 49 2014 7250 10965 10965 1 DRDLVTEDTGVRNEAQEEIYK IENAEMSTESYDQGKDRDLVTEDTGVRNEA EDTGVRNEAQEEIYKKGQSKRIWGELYKVI K D R Y K K 1 2 1 3 0 1 4 1 0 1 1 1 0 0 0 0 2 0 1 2 0 0 21 2 2479.1827 Q5T0F3;Q13823;B4DPI9 Q5T0F3 179 199 GNL2 Nucleolar GTP-binding protein 2 yes no 3 6.7046E-08 66.325 4 1 0.75902 0.91235 14.069 5 Median 0.76489 0.92865 11.029 4 0 Median 0.47095 0.73814 NaN 1 0 Median 50637000 27382000 23255000 43336000 22764000 20572000 7301200 4618500 2682600 1964 1477 2015 7251;7252;7253;7254;7255 10966;10967;10968;10969;10970;10971;10972;10973 10969 8 DRDLVTEDTGVRNEAQEEIYKK IENAEMSTESYDQGKDRDLVTEDTGVRNEA DTGVRNEAQEEIYKKGQSKRIWGELYKVID K D R K K G 1 2 1 3 0 1 4 1 0 1 1 2 0 0 0 0 2 0 1 2 0 0 22 3 2607.2776 Q5T0F3;Q13823;B4DPI9 Q5T0F3 179 200 GNL2 Nucleolar GTP-binding protein 2 yes no 4 0.00097901 43.198 2 0.78372 0.84473 NaN 1 Median 0.78372 0.84473 NaN 1 0 Median NaN NaN NaN 0 0 Median 36848000 27451000 9396600 36848000 27451000 9396600 0 0 0 1965 1477 2016 7256;7257 10974;10975 10974 2 DRDPEFYK KGRASEHKDQLSRLKDRDPEFYKFLQENDQ DQLSRLKDRDPEFYKFLQENDQSLLNFSDS K D R Y K F 0 1 0 2 0 0 1 0 0 0 0 1 0 1 1 0 0 0 1 0 0 0 8 1 1068.4876 Q9Y3T9;B3KNC3 Q9Y3T9 78 85 NOC2L Nucleolar complex protein 2 homolog yes no 2 0.023406 85.676 2 0.68694 0.89286 2.5625 2 Median 0.68694 0.89286 2.5625 2 0 Median NaN NaN NaN 0 0 Median 33278000 17271000 16007000 33278000 17271000 16007000 0 0 0 1966 1820 2017 7258;7259 10976;10977 10977 2 DRDSQITAIEK GVSVKQQFTEEEIYKDRDSQITAIEKTFED EIYKDRDSQITAIEKTFEDAQKSISQHYSK K D R E K T 1 1 0 2 0 1 1 0 0 2 0 1 0 0 0 1 1 0 0 0 0 0 11 1 1274.6466 A0A024R0H6;Q8N7H5;B4DGJ5 A0A024R0H6 171 181 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 6.1563E-05 99.215 2 0.71789 0.94685 6.8552 2 Median 0.71789 0.94685 6.8552 2 0 Median NaN NaN NaN 0 0 Median 70321000 42194000 28127000 70321000 42194000 28127000 0 0 0 1967 36 2018 7260;7261 10978;10979;10980 10980 3 DRDYSDHPSGGSYR DYPSRGYSDRDGYGRDRDYSDHPSGGSYRD RDRDYSDHPSGGSYRDSYESYGW_______ R D R Y R D 0 2 0 3 0 0 0 2 1 0 0 0 0 0 1 3 0 0 2 0 0 0 14 1 1610.671 H0Y6E7;H3BT71;P38159;B4E352;B3KRG5;H3BUY5;Q2VIN3;Q96E39 H0Y6E7 271 284 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 3 0.00031134 88.092 3 0.8169 1.095 5.6052 3 Median 0.8169 1.095 5.6052 3 0 Median NaN NaN NaN 0 0 Median 72060000 39520000 32540000 72060000 39520000 32540000 0 0 0 1968 1091;1531 2019 7262;7263;7264 10981;10982;10983;10984;10985 10983 5 DREDYVPYTGEK EHLLSYLEKEALEHKDREDYVPYTGEKKGK EHKDREDYVPYTGEKKGKTFIPKQKPVQTF K D R E K K 0 1 0 2 0 0 2 1 0 0 0 1 0 0 1 0 1 0 2 1 0 0 12 1 1470.6627 Q5HYL6;Q9NYL9 Q5HYL6 82 93 DKFZp686E1899;TMOD3 Tropomodulin-3 yes no 2 3.5895E-09 113.24 4 1.0037 1.3128 14.208 4 Median 1.0037 1.3128 14.208 4 0 Median NaN NaN NaN 0 0 Median 45243000 20673000 24571000 45243000 20673000 24571000 0 0 0 1969 1558 2020 7265;7266;7267;7268 10986;10987;10988;10989;10990;10991;10992 10989 7 DREEALHQFR EGYACTSIHGDRSQRDREEALHQFRSGKSP DRSQRDREEALHQFRSGKSPILVATAVAAR R D R F R S 1 2 0 1 0 1 2 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 10 1 1299.632 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1;A0A024R9A4;O15523;B4E132 A0A0D9SFB3 479 488 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 3 0.011856 69.721 3 0.53613 0.74096 NaN 1 Median 0.53613 0.74096 NaN 1 0 Median NaN NaN NaN 0 0 Median 59986000 41628000 18358000 59986000 41628000 18358000 0 0 0 1970 432 2021 7269;7270;7271 10993;10994;10995 10993 3 DREIQLEISGK GTPLTLYYSHWRKLRDREIQLEISGKERLE RKLRDREIQLEISGKERLEDLNFPEIKRRK R D R G K E 0 1 0 1 0 1 2 1 0 2 1 1 0 0 0 1 0 0 0 0 0 0 11 1 1286.683 Q9Y3T9;B3KNC3;Q9H9J5;Q8NAK7 Q9Y3T9 627 637 NOC2L Nucleolar complex protein 2 homolog yes no 2 0.0019734 101.3 3 0.78385 1.0492 11.719 3 Median 0.78385 1.0492 11.719 3 0 Median NaN NaN NaN 0 0 Median 19530000 10784000 8745600 19530000 10784000 8745600 0 0 0 1971 1820 2022 7272;7273;7274 10996;10997;10998;10999;11000 11000 5 DRFTDILVR DILKKRLQLPVWEYKDRFTDILVRHQSFVL PVWEYKDRFTDILVRHQSFVLVGETGSGKT K D R V R H 0 2 0 2 0 0 0 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 9 1 1133.6193 O43143;B4E0S6 O43143 144 152 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 0.0011789 78.655 1 1 0.84809 1.2442 NaN 1 Median NaN NaN NaN 0 0 Median 0.84809 1.2442 NaN 1 0 Median 16734000 9265700 7467900 0 0 0 16734000 9265700 7467900 1972 1180 2023 7275;7276 11001;11002 11001 2 DRFVNDYDK DPTANEDPEWILVEKDRFVNDYDKDNDGRL WILVEKDRFVNDYDKDNDGRLDPQELLPWV K D R D K D 0 1 1 3 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 1 0 0 9 1 1170.5306 Q14257;A8MXP8 Q14257 233 241 RCN2 Reticulocalbin-2 yes no 2 0.051037 86.882 1 1.1767 1.5718 NaN 1 Median 1.1767 1.5718 NaN 1 0 Median NaN NaN NaN 0 0 Median 9203000 3306700 5896300 9203000 3306700 5896300 0 0 0 1973 1484 2024 7277 11003 11003 1 DRIDAFLR VEELLKEVRLSEKKKDRIDAFLREVNQRVV RLSEKKKDRIDAFLREVNQRVVRVPSVPET K D R L R E 1 2 0 2 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 8 1 1004.5403 Q9H6R4;A0A0A0MRW6;B4DF80 Q9H6R4 103 110 NOL6 Nucleolar protein 6 yes no 2 0.013064 112.41 1 0.83611 1.1553 NaN 1 Median 0.83611 1.1553 NaN 1 0 Median NaN NaN NaN 0 0 Median 6323500 3469200 2854300 6323500 3469200 2854300 0 0 0 1974 1738 2025 7278 11004 11004 1 DRLLASTLVHSVK PVPLDDSNRPASLTKDRLLASTLVHSVKKE TKDRLLASTLVHSVKKEQEFRSIFDHIKLP K D R V K K 1 1 0 1 0 0 0 0 1 0 3 1 0 0 0 2 1 0 0 2 0 0 13 1 1437.8304 Q6DCA8;E9PK09;E9PQN2;E9PKI6;E9PK91;Q9NYF8;E9PJA7 Q6DCA8 568 580 BCLAF1 Bcl-2-associated transcription factor 1 yes no 3 0.00095551 87.647 2 0.51472 0.6784 9.6416 2 Median 0.51472 0.6784 9.6416 2 0 Median NaN NaN NaN 0 0 Median 25551000 16197000 9353800 25551000 16197000 9353800 0 0 0 1975 1036 2026 7279;7280 11005;11006;11007;11008 11006 4 DRPASGSPFQLFLSK KSNAKLWNEVLASLKDRPASGSPFQLFLSK DRPASGSPFQLFLSKVEETFQCICCQELVF K D R S K V 1 1 0 1 0 1 0 1 0 0 2 1 0 2 2 3 0 0 0 0 0 0 15 1 1648.8573 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9;B4E0F9 A0A087WVR3 716 730 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 0.030255 36.982 1 0.6859 0.87337 NaN 1 Median 0.6859 0.87337 NaN 1 0 Median NaN NaN NaN 0 0 Median 3700600 1940800 1759800 3700600 1940800 1759800 0 0 0 1976 337 2027 7281 11009 11009 1 DRPSAAHIVEALETDV KVIELFSVCTNEDPKDRPSAAHIVEALETD RPSAAHIVEALETDV_______________ K D R D V - 3 1 0 2 0 0 2 0 1 1 1 0 0 0 1 1 1 0 0 2 0 0 16 1 1721.8584 V9HWH0;Q96KB5 V9HWH0 307 322 HEL164;PBK Lymphokine-activated killer T-cell-originated protein kinase yes no 2;3 8.3254E-11 135.37 5 2 0.34293 0.45694 122.56 6 Median 0.47546 0.63174 51.948 4 0 Linear 2.24 3.158 6.1611 2 0 Median 65247000 42795000 22452000 49954000 38997000 10957000 15293000 3798100 11494000 1977 1691 2028 7282;7283;7284;7285;7286;7287;7288 11010;11011;11012;11013;11014;11015;11016;11017;11018;11019 11010 10 DRTLTPLGR LIRHSQYHVDGSLEKDRTLTPLGREQAELT DGSLEKDRTLTPLGREQAELTGLRLASLGL K D R G R E 0 2 0 1 0 0 0 1 0 0 2 0 0 0 1 0 2 0 0 0 0 0 9 1 1027.5774 Q96HS1 Q96HS1 117 125 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.020924 98.582 1 0.65023 0.89777 NaN 1 Median 0.65023 0.89777 NaN 1 0 Median NaN NaN NaN 0 0 Median 19181000 10639000 8542900 19181000 10639000 8542900 0 0 0 1978 1688 2029 7289 11020 11020 1 DRVNDVCTNGQDLIK LKKHEAFETDFTVHKDRVNDVCTNGQDLIK DRVNDVCTNGQDLIKKNNHHEENISSKMKG K D R I K K 0 1 2 3 1 1 0 1 0 1 1 1 0 0 0 0 1 0 0 2 0 0 15 1 1745.8366 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16;Q14917 Q13813 1924 1938 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 3.5146E-05 121.18 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 1979 1476 2030 7290 11021 11021 1 DRVVNLAVDK ILSCRKAGSIMREGRDRVVNLAVDKTGRIL MREGRDRVVNLAVDKTGRILACHGTDSVLE R D R D K T 1 1 1 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 3 0 0 10 1 1127.6299 Q5TDG3;Q9UNX4 Q5TDG3 280 289 WDR3 WD repeat-containing protein 3 yes no 2 0.020761 61.65 1 0.82957 1.0776 NaN 1 Median 0.82957 1.0776 NaN 1 0 Median NaN NaN NaN 0 0 Median 15431000 8168800 7262400 15431000 8168800 7262400 0 0 0 1980 1576 2031 7291 11022 11022 1 DRYLPDTLLLEECGLLR YDVDTLDMVFLDHWKDRYLPDTLLLEECGL YLPDTLLLEECGLLRKGTVLLADNVICPGA K D R L R K 0 2 0 2 1 0 2 1 0 0 6 0 0 0 1 0 1 0 1 0 0 0 17 1 2075.0721 A0A140VJG8;P21964;B8XPJ7;E7EMS6;B8XPJ8 A0A140VJG8 195 211 COMT Catechol O-methyltransferase yes no 3 0.017773 71.402 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2616300 2616300 0 2616300 2616300 0 0 0 0 1981 495 2032 7292 11023 11023 1 DSAAFEDNEVQDEFLEK DVQEESEGSDTDDNKDSAAFEDNEVQDEFL AAFEDNEVQDEFLEKLETSEFFELTSEEKL K D S E K L 2 0 1 3 0 1 4 0 0 0 1 1 0 2 0 1 0 0 0 1 0 0 17 0 1984.8538 Q9UIG0 Q9UIG0 715 731 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 1.612E-116 267.37 4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75839000 0 75839000 28749000 0 28749000 47090000 0 47090000 1982 1786 2033 7293;7294;7295;7296;7297;7298 11024;11025;11026;11027;11028;11029;11030 11025 7 DSALEFLTQLSR PVLQKRLCHPCWEVRDSALEFLTQLSRHWG EVRDSALEFLTQLSRHWGGQADFRCALLAS R D S S R H 1 1 0 1 0 1 1 0 0 0 3 0 0 1 0 2 1 0 0 0 0 0 12 0 1378.7092 Q6PJG6 Q6PJG6 518 529 BRAT1 BRCA1-associated ATM activator 1 yes yes 2 0.00032109 132.32 3 0.34813 0.46243 NaN 1 Median 0.34813 0.46243 NaN 1 0 Median NaN NaN NaN 0 0 Median 3492100 3011300 480750 3492100 3011300 480750 0 0 0 1983 1596 2034 7299;7300;7301 11031;11032;11033 11032 3 DSALETLQGQLEEK LERSLEAERASRAERDSALETLQGQLEEKA RDSALETLQGQLEEKAQELGHSQSALASAQ R D S E K A 1 0 0 1 0 2 3 1 0 0 3 1 0 0 0 1 1 0 0 0 0 0 14 0 1559.7679 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1161 1174 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 4.284E-61 241.39 5 2 0.67749 0.84545 27.206 5 Median 0.71058 0.89631 3.8964 3 0 Median 0.35541 0.54603 12.269 2 0 Median 160230000 103490000 56745000 106460000 65303000 41156000 53774000 38185000 15589000 1984 148;1499 2035 7302;7303;7304;7305;7306;7307;7308 11034;11035;11036;11037;11038;11039;11040;11041;11042;11043;11044;11045;11046 11036 13 DSAVNAICYGAK PLEKLLTSHKRLVMKDSAVNAICYGAKIML VMKDSAVNAICYGAKIMLPGVLRYEDGIEV K D S A K I 3 0 1 1 1 0 0 1 0 1 0 1 0 0 0 1 0 0 1 1 0 0 12 0 1267.5867 O60832;H7C2Q2 O60832 303 314 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 4.2782E-12 163.16 4 2 0.73342 0.90848 4.8705 4 Median 0.73342 0.90848 4.8705 4 0 Median NaN NaN NaN 0 0 Median 92052000 50818000 41234000 87170000 45935000 41234000 4882300 4882300 0 1985 1193 2036 7309;7310;7311;7312;7313;7314 11047;11048;11049;11050;11051;11052;11053;11054;11055;11056;11057;11058 11051 12 DSAYQSITHYRPVSASR SEEECKDRERPMYGRDSAYQSITHYRPVSA AYQSITHYRPVSASRSSLDLSYYPTSSSTS R D S S R S 2 2 0 1 0 1 0 0 1 1 0 0 0 0 1 4 1 0 2 1 0 0 17 1 1936.9391 P50402;Q5HY57 P50402 158 174 EMD Emerin yes no 3 1.6257E-06 108.71 2 2 0.63015 0.89013 46.262 4 Median 0.40159 0.54957 42.883 2 0 Median 0.75017 1.081 2.1667 2 0 Median 82332000 51900000 30432000 62036000 40680000 21356000 20296000 11220000 9076200 1986 1357 2037 7315;7316;7317;7318 11059;11060;11061;11062;11063;11064;11065;11066 11059 8 DSCDELIPEYLNFIR ______________________________ DSCDELIPEYLNFIRGVVDSEDLPLNISRE M D S I R G 0 1 1 2 1 0 2 0 0 2 2 0 0 1 1 1 0 0 1 0 0 0 15 0 1882.8771 Q9H6X9;A8K3W9 Q9H6X9 2 16 yes no 2 0.01708 62.166 1 0.3168 0.40042 NaN 1 Median 0.3168 0.40042 NaN 1 0 Median NaN NaN NaN 0 0 Median 672740 442230 230500 672740 442230 230500 0 0 0 1987 598 2038 7319 11067 11067 1 DSDEADLVLAK ATDSSGELMFLMKWKDSDEADLVLAKEANM MKWKDSDEADLVLAKEANMKCPQIVIAFYE K D S A K E 2 0 0 3 0 0 1 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 11 0 1174.5717 A4D177;Q13185 A4D177 144 154 CBX3 Chromobox protein homolog 3 yes no 1;2 6.9447E-70 240.13 5 2 0.76695 0.98441 4.0113 5 Median 0.82383 1.0182 4.1919 3 0 Median 0.6045 0.96792 2.3891 2 0 Median 171820000 101400000 70418000 62242000 35185000 27058000 109580000 66216000 43360000 1988 547 2039 7320;7321;7322;7323;7324;7325;7326 11068;11069;11070;11071;11072;11073;11074;11075 11070 8 DSDPFIRK IMVDKYIPNISMCLKDSDPFIRKQTLILLT NISMCLKDSDPFIRKQTLILLTNLLQEEFV K D S R K Q 0 1 0 2 0 0 0 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 8 1 976.49779 P42695;G3V1A9;Q96FA6;E9PLE0 P42695 989 996 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.003414 86.953 3 0.67938 0.89708 3.7684 2 Median 0.67938 0.89708 3.7684 2 0 Median NaN NaN NaN 0 0 Median 39867000 23829000 16038000 39867000 23829000 16038000 0 0 0 1989 1338 2040 7327;7328;7329 11076;11077;11078 11077 3 DSEADRFSDSHNALR FSTLAGLVFEWTIVKDSEADRFSDSHNALR DSEADRFSDSHNALRILTFLESTYIPPSYI K D S L R I 2 2 1 3 0 0 1 0 1 0 1 0 0 1 0 3 0 0 0 0 0 0 15 1 1718.7608 Q8TEM1 Q8TEM1 164 178 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 3 0.028051 27.263 1 0.60027 0.79436 NaN 1 Median 0.60027 0.79436 NaN 1 0 Median NaN NaN NaN 0 0 Median 13278000 8683700 4594000 13278000 8683700 4594000 0 0 0 1990 1661 2041 7330 11079 11079 1 DSEQVTVSLQNLGIHAGAYHANLEPEDK RYKGQSGIIYCFSQKDSEQVTVSLQNLGIH IHAGAYHANLEPEDKTTVHRKWSANEIQVV K D S D K T 3 0 2 2 0 2 3 2 2 1 3 1 0 0 1 2 1 0 1 2 0 0 28 0 3034.4632 A0A024RAV2;P46063 A0A024RAV2 326 353 RECQL ATP-dependent DNA helicase Q1 yes no 3 4.634E-21 118.08 3 1 0.4962 0.61991 79.768 3 Median 0.4061 0.51063 27.426 2 0 Median 1.2834 1.9505 NaN 1 0 Median 38481000 25416000 13065000 27464000 21259000 6205100 11017000 4157600 6859600 1991 250 2042 7331;7332;7333;7334 11080;11081;11082;11083;11084 11081 5 DSETVDEDEEVDPALTVGTIK VEGPAAKRTMRPTQKDSETVDEDEEVDPAL EDEEVDPALTVGTIKKHTLSIGDMVTGTVK K D S I K K 1 0 0 4 0 0 4 1 0 1 1 1 0 0 1 1 3 0 0 3 0 0 21 0 2261.0434 Q14690;B4DH82 Q14690 1009 1029 PDCD11 Protein RRP5 homolog yes no 2 8.8123E-39 174.24 4 1 1.0607 1.339 8.3052 5 Median 1.0662 1.3412 1.8779 4 0 Median 0.74812 1.1274 NaN 1 0 Median 64007000 34746000 29262000 46235000 24282000 21953000 17772000 10464000 7308100 1992 1494 2043 7335;7336;7337;7338;7339 11085;11086;11087;11088;11089;11090;11091;11092 11086 8 DSETVDEDEEVDPALTVGTIKK VEGPAAKRTMRPTQKDSETVDEDEEVDPAL DEEVDPALTVGTIKKHTLSIGDMVTGTVKS K D S K K H 1 0 0 4 0 0 4 1 0 1 1 2 0 0 1 1 3 0 0 3 0 0 22 1 2389.1384 Q14690;B4DH82 Q14690 1009 1030 PDCD11 Protein RRP5 homolog yes no 3 6.7887E-09 102.07 4 1 1.0147 1.2371 13.978 4 Median 1.0193 1.2404 11.379 3 0 Median 0.69538 1.072 NaN 1 0 Median 27430000 15305000 12124000 20817000 11637000 9180300 6612800 3668700 2944100 1993 1494 2044 7340;7341;7342;7343;7344 11093;11094;11095;11096;11097;11098;11099;11100;11101;11102 11094 10 DSFDDRGPSLNPVLDYDHGSR RVPRDDWEEKRHFRRDSFDDRGPSLNPVLD GPSLNPVLDYDHGSRSQESGYYDRMDYEDD R D S S R S 0 2 1 5 0 0 0 2 1 0 2 0 0 1 2 3 0 0 1 1 0 0 21 1 2361.0622 A0A0R4J2E8;A8MXP9;P43243;D6REM6;D6R991 A0A0R4J2E8 187 207 MATR3 Matrin-3 yes no 3;4 0.00076617 34.009 3 0.41039 0.54986 67.651 3 Median 0.41039 0.54986 67.651 3 0 Median NaN NaN NaN 0 0 Median 57069000 36188000 20881000 57069000 36188000 20881000 0 0 0 1994 445 2045 7345;7346;7347 11103;11104;11105;11106 11106 4 DSFIGENSR PHTPFRASKLTQVLRDSFIGENSRTCMIAT LTQVLRDSFIGENSRTCMIATISPGMASCE R D S S R T 0 1 1 1 0 0 1 1 0 1 0 0 0 1 0 2 0 0 0 0 0 0 9 0 1023.4621 B0AZS5;H0Y5Z9;O00139;A8K3S3;A0A140VKF1;Q99661;B7Z7M6;B7Z6Q6;Q8N5N1 A8K3S3 469 477 KIF2C;KIF2A Kinesin-like protein;Kinesin-like protein KIF2A;Kinesin-like protein KIF2C no no 2 0.025155 48.794 1 0.79882 1.0638 NaN 1 Median 0.79882 1.0638 NaN 1 0 Median NaN NaN NaN 0 0 Median 19982000 10422000 9560000 19982000 10422000 9560000 0 0 0 1995 664;1163;514 2046 7348 11107 11107 1 DSFTAVVITGVQPEHIQYLK DERFLHHLIIEEKEKDSFTAVVITGVQPEH VVITGVQPEHIQYLKNYFHLWTRQLAHIYH K D S L K N 1 0 0 1 0 2 1 1 1 2 1 1 0 1 1 1 2 0 1 3 0 0 20 0 2244.179 A6NHR9 A6NHR9 317 336 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 1.6638E-15 128.96 5 0.95264 1.2037 18.293 4 Median 0.95264 1.2037 18.293 4 0 Median NaN NaN NaN 0 0 Median 17459000 7713300 9745900 17459000 7713300 9745900 0 0 0 1996 568 2047 7349;7350;7351;7352;7353 11108;11109;11110;11111;11112;11113;11114 11108 7 DSGDGVTHTVPIYEGYALPHAILR ______________________________ VPIYEGYALPHAILRLDLAGRDLTDYLMKI M D S L R L 2 1 0 2 0 0 1 3 2 2 2 0 0 0 2 1 2 0 2 2 0 0 24 0 2580.2973 V9HVZ7 V9HVZ7 2 25 HEL-176 yes yes 3;4 9.1418E-58 183.21 7 2 0.74194 1.017 48.86 7 Median 0.7384 1.0143 10.052 5 0 Median 1.6351 2.5234 26.739 2 0 Median 572710000 305660000 267050000 529890000 291450000 238430000 42821000 14207000 28614000 1997 1859 2048 7354;7355;7356;7357;7358;7359;7360;7361;7362 11115;11116;11117;11118;11119;11120;11121;11122;11123;11124;11125;11126;11127 11118 13 DSGNLYDSEIQNVLGVK LEDPSEFETPALSTKDSGNLYDSEIQNVLG GNLYDSEIQNVLGVKHGHDMQPACQNDSKI K D S V K H 0 0 2 2 0 1 1 2 0 1 2 1 0 0 0 2 0 0 1 2 0 0 17 0 1849.9058 Q562F6;B7Z7S9 Q562F6 773 789 SGOL2 Shugoshin-like 2 yes no 2 6.66E-23 168.98 7 2 0.80976 1.0127 8.1869 6 Median 0.85492 1.0643 6.3241 4 0 Median 0.61829 0.93208 0.62578 2 0 Median 100050000 58983000 41071000 61691000 34587000 27104000 38362000 24396000 13966000 1998 1546 2049 7363;7364;7365;7366;7367;7368;7369;7370;7371 11128;11129;11130;11131;11132;11133;11134;11135;11136;11137 11129 10 DSGPLFNTDYDILK TASIHVYSIQKAMLKDSGPLFNTDYDILKS KDSGPLFNTDYDILKSNLQNCSKFSAIQCA K D S L K S 0 0 1 3 0 0 0 1 0 1 2 1 0 1 1 1 1 0 1 0 0 0 14 0 1596.7672 Q569I8;E9PM91;E9PNC0;E9PRK3;Q05BV7;B7ZAQ5;B4DYZ7;A0A024R5M8;Q15054 Q569I8 110 123 POLD3 DNA polymerase delta subunit 3 yes no 2 0.0092182 87.216 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1090300 1090300 0 1090300 1090300 0 0 0 0 1999 1548 2050 7372 11138 11138 1 DSGPLSDPITGKPYVPLLEAEEVR PELRLQSDDILPLGKDSGPLSDPITGKPYV TGKPYVPLLEAEEVRLSQSLLELWRRRGPV K D S V R L 1 1 0 2 0 0 3 2 0 1 3 1 0 0 4 2 1 0 1 2 0 0 24 1 2581.3275 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 361 384 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 3 1.2474E-16 123.84 3 0.76437 1.0197 19.011 3 Median 0.76437 1.0197 19.011 3 0 Median NaN NaN NaN 0 0 Median 43149000 24390000 18759000 43149000 24390000 18759000 0 0 0 2000 93 2051 7373;7374;7375 11139;11140;11141;11142 11139 4 DSGSQEVLSELR ELSQDAEPAGSQETKDSGSQEVLSELRVLS ETKDSGSQEVLSELRVLSQKLKENHQSRKQ K D S L R V 0 1 0 1 0 1 2 1 0 0 2 0 0 0 0 3 0 0 0 1 0 0 12 0 1318.6365 Q9BVJ6;B4E343;X6RJY0 Q9BVJ6 450 461 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 2.1794E-47 211.37 4 1.0106 1.3693 2.4774 3 Median 1.0106 1.3693 2.4774 3 0 Median NaN NaN NaN 0 0 Median 78634000 38336000 40298000 78634000 38336000 40298000 0 0 0 2001 1719 2052 7376;7377;7378;7379 11143;11144;11145;11146;11147;11148 11143 6 DSGYPETLVNLIVLSQHLGKPPEVTNR RWEAAEGLLQEALDKDSGYPETLVNLIVLS VLSQHLGKPPEVTNRYLSQLKDAHRSHPFI K D S N R Y 0 1 2 1 0 1 2 2 1 1 4 1 0 0 3 2 2 0 1 3 0 0 27 1 2975.5716 M0QXB4;O14579;Q7Z4Z1 M0QXB4 269 295 COPE Coatomer subunit epsilon yes no 3;4 0.00014897 54.559 3 0.80313 1.0448 22.159 3 Plateau 0.80313 1.0448 22.159 3 0 Plateau NaN NaN NaN 0 0 Median 17836000 10699000 7136900 17836000 10699000 7136900 0 0 0 2002 1158 2053 7380;7381;7382 11149;11150;11151;11152 11152 4 DSIANATVLLDYHLNYLK KAWQGMVPFVFVGTKDSIANATVLLDYHLN ANATVLLDYHLNYLKEVDQLRLERLQIDEQ K D S L K E 2 0 2 2 0 0 0 0 1 1 4 1 0 0 0 1 1 0 2 1 0 0 18 0 2062.0735 X5DQX7;Q06787;W5ZQ92;R9WQY1;A8MQB8;G3V0J0;X5D907;R9WNI0;Q59GC1;R9WPL0;A0A087WXI3;B4DFH8;B4DZ17 X5DQX7 408 425 FMR1 Fragile X mental retardation protein 1 yes no 2;3 2.2007E-110 260.81 7 0.9569 1.2059 12.878 6 Median 0.9569 1.2059 12.878 6 0 Median NaN NaN NaN 0 0 Median 77483000 35324000 42159000 77483000 35324000 42159000 0 0 0 2003 1447 2054 7383;7384;7385;7386;7387;7388;7389 11153;11154;11155;11156;11157;11158;11159;11160;11161;11162 11157 10 DSIFSNLTGQLDYQGFEK LNDKVKKKALTSFERDSIFSNLTGQLDYQG FSNLTGQLDYQGFEKADMVIEAVFEDLSLK R D S E K A 0 0 1 2 0 2 1 2 0 1 2 1 0 2 0 2 1 0 1 0 0 0 18 0 2060.9691 B4DDZ5;E9KL44;P40939;B4DRH6 E9KL44 423 440 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase no no 2 4.6411E-17 178.67 4 0.65832 0.83001 3.041 3 Median 0.65832 0.83001 3.041 3 0 Median NaN NaN NaN 0 0 Median 53420000 28045000 25375000 53420000 28045000 25375000 0 0 0 2004 1020;797 2055 7390;7391;7392;7393 11163;11164;11165;11166;11167;11168;11169;11170 11170 8 DSITPDIATKPGQPLFLDSISPK NVRRHFDEVHRGLRRDSITPDIATKPGQPL TKPGQPLFLDSISPKKSFKTRKQKSSSKAE R D S P K K 1 0 0 3 0 1 0 1 0 3 2 2 0 1 4 3 2 0 0 0 0 0 23 1 2439.2897 Q2TB10;B7Z4V7;Q49A13 Q2TB10 316 338 ZNF800 Zinc finger protein 800 yes no 3 1.291E-06 93.196 3 0.8997 1.1117 8.767 3 Median 0.8997 1.1117 8.767 3 0 Median NaN NaN NaN 0 0 Median 23412000 12525000 10886000 23412000 12525000 10886000 0 0 0 2005 1530 2056 7394;7395;7396 11171;11172;11173 11171 3 DSLDPSFTHAMQLLTAEIEK MEPENKYLPELMAEKDSLDPSFTHAMQLLT SFTHAMQLLTAEIEKIQKGDSKKDDEENYL K D S E K I 2 0 0 2 0 1 2 0 1 1 3 1 1 1 1 2 2 0 0 0 0 0 20 0 2245.0936 B4DDX2;B2R7B5;Q07666;B4E043 B4DDX2 92 111 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 3 8.7899E-40 136.04 2 0.81438 1.0171 NaN 1 Median 0.81438 1.0171 NaN 1 0 Median NaN NaN NaN 0 0 Median 39551000 21832000 17718000 39551000 21832000 17718000 0 0 0 2006 704 2057 7397;7398 11174;11175;11176 11175 3 DSLGAYSETHSDDVTQVR FWDARMNSQNLSTTKDSLGAYSETHSDDVT GAYSETHSDDVTQVRFHPSNPNMVVSGSSD K D S V R F 1 1 0 3 0 1 1 1 1 0 1 0 0 0 0 3 2 0 1 2 0 0 18 0 1978.8868 G3V4B8;A0A024R667;Q96FK6 G3V4B8 160 177 WDR89;C14orf150 WD repeat-containing protein 89 yes no 3 9.1214E-05 44.382 2 0.54547 0.71791 NaN 1 Median NaN NaN NaN 0 0 Median 0.54547 0.71791 NaN 1 0 Median 7646300 6080200 1566100 0 0 0 7646300 6080200 1566100 2007 156 2058 7399;7400 11177;11178 11177 2 DSLIDSLT KLNEAQPSTIATSMRDSLIDSLT_______ TIATSMRDSLIDSLT_______________ R D S L T - 0 0 0 2 0 0 0 0 0 1 2 0 0 0 0 2 1 0 0 0 0 0 8 0 862.42838 P56537 P56537 238 245 EIF6 Eukaryotic translation initiation factor 6 yes yes 1 6.651E-05 100.07 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30767000 0 0 30767000 0 0 0 0 0 2008 1382 2059 7401;7402 11179;11180;11181 11181 3 DSLIFLVDASK EENLEASGDYKYSGRDSLIFLVDASKAMFE YSGRDSLIFLVDASKAMFESQSEDELTPFD R D S S K A 1 0 0 2 0 0 0 0 0 1 2 1 0 1 0 2 0 0 0 1 0 0 11 0 1206.6496 A0A024R1N4;P12956;B2RDN9 A0A024R1N4 36 46 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 6.3841E-09 154.01 3 2 0.55417 0.7655 10.841 5 Median 0.5578 0.72669 5.1608 3 0 Median 0.54427 0.87162 4.6078 2 0 Median 366900000 242220000 124670000 262570000 171520000 91049000 104320000 70696000 33626000 2009 62 2060 7403;7404;7405;7406;7407 11182;11183;11184;11185;11186;11187;11188;11189 11182 8 DSLIIIDELGR AEMLETASILRSATKDSLIIIDELGRGTST SATKDSLIIIDELGRGTSTYDGFGLAWAIS K D S G R G 0 1 0 2 0 0 1 1 0 3 2 0 0 0 0 1 0 0 0 0 0 0 11 0 1242.682 V9H019;Q53GS1;Q53FK0;E9PHA6;P43246;B4DL39;B4DSB9;B4DN49 V9H019 742 752 MSH2 DNA mismatch repair protein Msh2 yes no 2 0.00058058 78.934 2 1 0.34689 0.4809 104.92 3 Median 0.33884 0.46301 5.3619 2 0 Median 2.1544 2.8465 NaN 1 0 Median 14573000 9716100 4856800 12124000 9195600 2928600 2448700 520430 1928200 2010 1029 2061 7408;7409;7410 11190;11191;11192;11193;11194;11195 11190 6 DSLISQSHTSHNLHPQK GGKKPFRPEASGSSRDSLISQSHTSHNLHP LISQSHTSHNLHPQKPHLPASHGPQMHGHP R D S Q K P 0 0 1 1 0 2 0 0 3 1 2 1 0 0 1 4 1 0 0 0 0 0 17 0 1927.95 A0A024RC75;O14647 A0A024RC75 1589 1605 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 3 5.5741E-05 95.822 3 0.80482 1.0164 15.002 3 Median 0.80482 1.0164 15.002 3 0 Median NaN NaN NaN 0 0 Median 22604000 12231000 10373000 22604000 12231000 10373000 0 0 0 2011 289 2062 7411;7412;7413 11196;11197;11198;11199 11196 4 DSLTLVFVETK DKRSFLLDLLNATGKDSLTLVFVETKKGAD ATGKDSLTLVFVETKKGADSLEDFLYHEGY K D S T K K 0 0 0 1 0 0 1 0 0 0 2 1 0 1 0 1 2 0 0 2 0 0 11 0 1250.6758 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1 A0A0D9SFB3 441 451 DDX3X ATP-dependent RNA helicase DDX3X yes no 2 1.2393E-05 102.06 4 0.49519 0.62045 4.5694 4 Median 0.49519 0.62045 4.5694 4 0 Median NaN NaN NaN 0 0 Median 51865000 33779000 18086000 51865000 33779000 18086000 0 0 0 2012 432 2063 7414;7415;7416;7417 11200;11201;11202;11203;11204;11205 11205 6 DSLVDIIGICK QFDFTGIDDLENKSKDSLVDIIGICKSYED NKSKDSLVDIIGICKSYEDATKITVRSNNR K D S C K S 0 0 0 2 1 0 0 1 0 3 1 1 0 0 0 1 0 0 0 1 0 0 11 0 1231.6482 P27694;I3L4R8 P27694 314 324 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 2 9.5765E-06 138.98 4 0.66248 0.84087 2.768 4 Median 0.66248 0.84087 2.768 4 0 Median NaN NaN NaN 0 0 Median 19466000 11559000 7907100 19466000 11559000 7907100 0 0 0 2013 1302 2064 7418;7419;7420;7421 11206;11207;11208;11209;11210;11211 11206 6 DSLVLNNITR LKFIDPFCRIAARTKDSLVLNNITRGIFET AARTKDSLVLNNITRGIFETIVEQAPLAIE K D S T R G 0 1 2 1 0 0 0 0 0 1 2 0 0 0 0 1 1 0 0 1 0 0 10 0 1143.6248 Q6PJJ2;P56182;B4DZM3;Q53FR7;Q96J73 Q6PJJ2 211 220 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 2 3.6507E-05 102.62 3 2 0.75657 1.0841 19.221 5 Median 0.7972 1.0651 26.554 3 0 Median 0.73622 1.1208 4.7085 2 0 Median 109490000 58907000 50586000 71208000 36829000 34378000 38286000 22078000 16208000 2014 1381 2065 7422;7423;7424;7425;7426 11212;11213;11214;11215;11216;11217 11214 6 DSLVQSCPGSLSLCAGVK SLSGSKSPCPQEKSKDSLVQSCPGSLSLCA VQSCPGSLSLCAGVKSSTPPGESYFGVSSL K D S V K S 1 0 0 1 2 1 0 2 0 0 3 1 0 0 1 4 0 0 0 2 0 0 18 0 1876.9023 A0A140VK53;Q9UQ35;O60382 A0A140VK53 1023 1040 SRRM2;KIAA0324 Serine/arginine repetitive matrix protein 2 yes no 2 0.00098535 91.076 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3044100 3044100 0 3044100 3044100 0 0 0 0 2015 509 2066 7427;7428 11218;11219 11219 2 DSLYKPILR GQLRLAHGVRLKANKDSLYKPILRQKKHFN RLKANKDSLYKPILRQKKHFNSLHIPKALQ K D S L R Q 0 1 0 1 0 0 0 0 0 1 2 1 0 0 1 1 0 0 1 0 0 0 9 1 1103.6339 Q14692 Q14692 1148 1156 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.034166 90.37 1 1 0.82467 1.2245 7.4205 2 Median 0.86383 1.1619 NaN 1 0 Median 0.78728 1.2905 NaN 1 0 Median 28218000 14639000 13579000 9014400 3811700 5202700 19204000 10827000 8376600 2016 1495 2067 7429;7430 11220;11221 11221 2 DSNELSDSAGEEDSADLK ERCKRGRFVVKEEKKDSNELSDSAGEEDSA ELSDSAGEEDSADLKRAQKDKGLHVEVRVN K D S L K R 2 0 1 4 0 0 3 1 0 0 2 1 0 0 0 4 0 0 0 0 0 0 18 0 1880.7759 Q9Y6X9 Q9Y6X9 772 789 MORC2 MORC family CW-type zinc finger protein 2 yes yes 2 0.0051088 92.039 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2017 1834 2068 7431 11222 11222 1 DSNNLCLHFNPR EVAPDAKSFVLNLGKDSNNLCLHFNPRFNA LGKDSNNLCLHFNPRFNAHGDANTIVCNSK K D S P R F 0 1 3 1 1 0 0 0 1 0 2 0 0 1 1 1 0 0 0 0 0 0 12 0 1485.6783 P09382 P09382 38 49 LGALS1 Galectin-1 yes yes 3 0.00058004 69.451 2 0.36359 0.50308 12.112 2 Median 0.36359 0.50308 12.112 2 0 Median NaN NaN NaN 0 0 Median 14813000 11028000 3784500 14813000 11028000 3784500 0 0 0 2018 1247 2069 7432;7433 11223;11224 11224 2 DSNPEEIEIDFETLKPSTLR GRVVHIIQAREPSLRDSNPEEIEIDFETLK EIEIDFETLKPSTLRELERYVLSCLRKKPR R D S L R E 0 1 1 2 0 0 4 0 0 2 2 1 0 1 2 2 2 0 0 0 0 0 20 1 2332.1434 A0A024RCR5;A0A0G2JK44;P25440;H0Y6K2;A0A140T9E9;X5CF57;A0A0G2JHN8;A0A140T9I1 A0A024RCR5 678 697 BRD2 Bromodomain-containing protein 2 yes no 3 0.00023243 42.172 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6929900 6929900 0 0 0 0 6929900 6929900 0 2019 300 2070 7434 11225 11225 1 DSPAFPDSPWR SASKLRIAQVSPGPRDSPAFPDSPWRERVL PGPRDSPAFPDSPWRERVLAPILPDNFSTP R D S W R E 1 1 0 2 0 0 0 0 0 0 0 0 0 1 3 2 0 1 0 0 0 0 11 0 1273.5728 Q9NQS7;B3KPD3 Q9NQS7 268 278 INCENP Inner centromere protein yes no 2 0.0057444 60.064 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9822100 9822100 0 0 0 0 9822100 9822100 0 2020 1752 2071 7435;7436 11226;11227 11227 2 DSPFGLSFVR RWDRVKIVCSQPYSKDSPFGLSFVRFHSPP QPYSKDSPFGLSFVRFHSPPDKDEAEAPSQ K D S V R F 0 1 0 1 0 0 0 1 0 0 1 0 0 2 1 2 0 0 0 1 0 0 10 0 1123.5662 A0A024R0S8;Q59HH7;P18887;F5H8D7;B4DEB2;B2RCY5;B4DTD3;M0R0D2;M0QYS5;M0QZ96;M0R1U8 A0A024R0S8 139 148 XRCC1 DNA repair protein XRCC1 yes no 2 0.0010526 114.89 3 1 0.69178 0.95448 26.294 4 Median 0.68072 0.94259 4.9597 3 0 Median 1.1045 1.561 NaN 1 0 Median 28606000 16059000 12548000 21140000 12603000 8536900 7466700 3455800 4010900 2021 42 2072 7437;7438;7439;7440 11228;11229;11230;11231;11232 11230 5 DSPQSADCNQEIATSHNIVYCGGVLDK KDKDWVLKILPYLDKDSPQSADCNQEIATS ATSHNIVYCGGVLDKQITNRNTVSWEQSLF K D S D K Q 2 0 2 3 2 2 1 2 1 2 1 1 0 0 1 3 1 0 1 2 0 0 27 0 2977.3182 Q8NG31;E9PPJ1 Q8NG31 681 707 CASC5 Protein CASC5 yes no 3 0.00052187 65.023 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1037800 1037800 0 1037800 1037800 0 0 0 0 2022 1656 2073 7441 11233 11233 1 DSQALSLTK KDKTHLQEKLQSLEKDSQALSLTKCELENQ LQSLEKDSQALSLTKCELENQIAQLNKEKE K D S T K C 1 0 0 1 0 1 0 0 0 0 2 1 0 0 0 2 1 0 0 0 0 0 9 0 961.50803 P49454 P49454 2139 2147 CENPF Centromere protein F yes yes 2 0.036808 47.732 1 1 0.784 0.97439 NaN 1 Median 0.784 0.97439 NaN 1 0 Median NaN NaN NaN 0 0 Median 8323800 5558200 2765600 8323800 5558200 2765600 0 0 0 2023 1351 2074 7442;7443 11234;11235 11235 2 DSQDAGGFGPEDR QALHSLELHYQAFLRDSQDAGGFGPEDRLM LRDSQDAGGFGPEDRLMAEREYGSCSHHYQ R D S D R L 1 1 0 3 0 1 1 3 0 0 0 0 0 1 1 1 0 0 0 0 0 0 13 0 1349.5484 Q15149 Q15149 1076 1088 PLEC Plectin yes yes 2 6.5927E-33 214.04 4 1.0581 1.4421 16.029 3 Median 1.0581 1.4421 16.029 3 0 Median NaN NaN NaN 0 0 Median 53042000 29760000 23282000 53042000 29760000 23282000 0 0 0 2024 1507 2075 7444;7445;7446;7447 11236;11237;11238;11239;11240;11241;11242 11239 7 DSQFLVSSVTDDDFGKK CFCIFHMPCIQKWAKDSQFLVSSVTDDDFG QFLVSSVTDDDFGKKDCPWPCPKCRFEYKR K D S K K D 0 0 0 4 0 1 0 1 0 0 1 2 0 2 0 3 1 0 0 2 0 0 17 1 1886.8898 B1Q2B0;Q6ZNB6 B1Q2B0 194 210 URCC5;NFXL1 NF-X1-type zinc finger protein NFXL1 yes no 2 2.8E-07 124.07 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1111600 1111600 0 1111600 1111600 0 0 0 0 2025 679 2076 7448;7449;7450 11243;11244;11245 11245 3 DSSDPNELYVNHK FRLQVRCTRNPHAAKDSSDPNELYVNHKVY AKDSSDPNELYVNHKVYTRHMTWIPLGNQA K D S H K V 0 0 2 2 0 0 1 0 1 0 1 1 0 0 1 2 0 0 1 1 0 0 13 0 1516.6794 Q96HT3;O15160;D6RDJ3;E7EQB9 Q96HT3 147 159 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 2 7.2507E-18 175.65 5 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6809500 6809500 0 6809500 6809500 0 0 0 0 2026 1178 2077 7451;7452;7453;7454;7455 11246;11247;11248;11249;11250 11246 5 DSSGQEDETQSSNDDPSQSVASQDAQEIIRPR DNSGCSGENKEENIKDSSGQEDETQSSNDD QSVASQDAQEIIRPRRCKYFDTNSEVEEES K D S P R R 2 2 1 5 0 5 3 1 0 2 0 0 0 0 2 7 1 0 0 1 0 0 32 1 3475.5207 Q8N108 Q8N108 120 151 MIER1 Mesoderm induction early response protein 1 yes yes 3 0.010008 19.985 2 0.66765 0.93358 15.857 2 Median NaN NaN NaN 0 0 Median 0.66765 0.93358 15.857 2 0 Median 16137000 10706000 5431400 0 0 0 16137000 10706000 5431400 2027 1633 2078 7456;7457 11251;11252;11253;11254;11255;11256 11252 6 DSSLVNEQSQITR IHKERPQKHSHEIFRDSSLVNEQSQITRRK FRDSSLVNEQSQITRRKKRKKDFQHLISSP R D S T R R 0 1 1 1 0 2 1 0 0 1 1 0 0 0 0 3 1 0 0 1 0 0 13 0 1475.7216 B4DZG2;A0A024R8C1;Q15361 B4DZG2 39 51 TTF1 Transcription termination factor 1 yes no 2 1.284E-25 199.68 4 1 0.73129 0.97484 17.65 4 Median 0.67017 0.90238 9.931 3 0 Median 0.9191 1.2866 NaN 1 0 Median 35725000 20526000 15199000 27243000 16194000 11050000 8482200 4332700 4149500 2028 195 2079 7458;7459;7460;7461;7462 11257;11258;11259;11260;11261;11262;11263;11264 11257 8 DSSQILSASFDQTIR ERAHSKGVTCLSFSKDSSQILSASFDQTIR DSSQILSASFDQTIRIHGLKSGKTLKEFRG K D S I R I 1 1 0 2 0 2 0 0 0 2 1 0 0 1 0 4 1 0 0 0 0 0 15 0 1666.8162 A0MNN4;Q2TAY7 A0MNN4 318 332 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes no 2 2.779E-05 90.731 2 0.32593 0.45523 NaN 1 Median 0.32593 0.45523 NaN 1 0 Median NaN NaN NaN 0 0 Median 5614200 4676000 938220 5614200 4676000 938220 0 0 0 2029 529 2080 7463;7464 11265;11266 11266 2 DSSQVHPLAVLLLTDGDVHIR TYFMAVKSNGSVFVRDSSQVHPLAVLLLTD PLAVLLLTDGDVHIRDDGRRATISLSDSDL R D S I R D 1 1 0 3 0 1 0 1 2 1 4 0 0 0 1 2 1 0 0 3 0 0 21 0 2284.2175 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 1062 1082 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 3 5.8733E-06 75.646 2 2 0.80784 1.0995 14.754 4 Median 0.80822 1.074 14.838 2 0 Median 0.80784 1.1616 19.271 2 0 Median 51354000 26422000 24932000 25483000 14248000 11235000 25871000 12174000 13697000 2030 93 2081 7465;7466;7467;7468 11267;11268;11269;11270;11271;11272;11273 11272 7 DSSRLPSEGPRPAHVVVGDVLQAADVDK AQAVQAGYEVTVLVRDSSRLPSEGPRPAHV HVVVGDVLQAADVDKTVAGQDAVIVLLGTR R D S D K T 3 2 0 4 0 1 1 2 1 0 2 1 0 0 3 3 0 0 0 5 0 0 28 2 2913.4944 V9HWI1;P30043;M0QZL1;M0R192 V9HWI1 36 63 HEL-S-10;BLVRB Flavin reductase (NADPH) yes no 4 0.034251 25.726 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9029900 9029900 0 9029900 9029900 0 0 0 0 2031 1305 2082 7469 11274 11274 1 DSTEYFIVFEPR AEIMSLVLAESSPGRDSTEYFIVFEPRLPL PGRDSTEYFIVFEPRLPLLSRTLEPYILPF R D S P R L 0 1 0 1 0 0 2 0 0 1 0 0 0 2 1 1 1 0 1 1 0 0 12 0 1501.7089 A6NHR9;J3KTL8 A6NHR9 1585 1596 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 2.4529E-06 139.43 3 2 0.86064 1.2168 39.603 5 Median 0.85538 1.2062 13.597 3 0 Median 1.5832 2.2325 13.966 2 0 Median 26954000 13391000 13563000 15180000 8871800 6308300 11774000 4519200 7254500 2032 568 2083 7470;7471;7472;7473;7474 11275;11276;11277;11278;11279 11276 5 DSTHLICAFANTPK KALELGAKYRPDWTRDSTHLICAFANTPKY RDSTHLICAFANTPKYSQVLGLGGRIVRKE R D S P K Y 2 0 1 1 1 0 0 0 1 1 1 1 0 1 1 1 2 0 0 0 0 0 14 0 1573.7559 A0A024R0S8;Q59HH7;P18887;F5H8D7;B4DEB2;B2RCY5;B4DTD3 A0A024R0S8 356 369 XRCC1 DNA repair protein XRCC1 yes no 3 0.0023631 28.089 2 0.70717 0.89737 10.705 2 Median 0.70717 0.89737 10.705 2 0 Median NaN NaN NaN 0 0 Median 17638000 10035000 7603200 17638000 10035000 7603200 0 0 0 2033 42 2084 7475;7476 11280;11281;11282 11282 3 DSTLIMQLLR EAIAELDTLSEESYKDSTLIMQLLRDNLTL EESYKDSTLIMQLLRDNLTLWTSDTQGDEA K D S L R D 0 1 0 1 0 1 0 0 0 1 3 0 1 0 0 1 1 0 0 0 0 0 10 0 1188.6536 D0PNI1;P63104;E7EX29;B0AZS6;B7Z2E6;H0YB80;Q2F831;B2R6N6;A0A024R1K7;Q04917;Q9H4N8;V9HW98;G9K389;G9K388;P62258;B7ZA86;K7EM20;B4DE78;B4DHC4;B3KNB4;P61981;P27348;B4DMT8;Q53S41;B4DY04;V9HWD6;P31946;B5BU24;P31947 D0PNI1 213 222 YWHAZ;YWHAH;HEL2;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion;YWHAE;YWHAG;YWHAQ;HEL-S-1;YWHAB;SFN 14-3-3 protein zeta/delta;14-3-3 protein eta;14-3-3 protein epsilon;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein sigma no no 2 4.4409E-06 124.98 6 2 0.62415 0.85463 23.172 6 Median 0.59636 0.81784 19.14 5 0 Median 0.76354 1.1386 NaN 1 0 Median 36245000 21180000 15065000 21203000 14195000 7007100 15042000 6984600 8057800 2034 974;1085;1300;758;1311;1312 2085;2086 7477;7478;7479;7480;7481;7482;7483;7484 11283;11284;11285;11286;11287;11288;11289;11290;11291;11292;11293;11294 11288 278 12 DSVAQGTTNVHSSEHAGR HIKNVKEDSTADDSKDSVAQGTTNVHSSEH AQGTTNVHSSEHAGRNGRNAADPISGDFKE K D S G R N 2 1 1 1 0 1 1 2 2 0 0 0 0 0 0 3 2 0 0 2 0 0 18 0 1851.846 P46013 P46013 173 190 MKI67 Antigen KI-67 yes yes 2;3 2.6312E-54 182.37 7 3 0.96558 1.3455 9.9486 10 Median 0.9333 1.272 8.0488 7 0 Median 0.97572 1.5909 8.8377 3 0 Plateau 533870000 267270000 266610000 470390000 234940000 235450000 63485000 32327000 31158000 2035 1342 2087 7485;7486;7487;7488;7489;7490;7491;7492;7493;7494 11295;11296;11297;11298;11299;11300;11301;11302;11303;11304;11305;11306;11307;11308;11309;11310;11311;11312 11304 18 DSVVAGFQWATK LTDITKGVQYLNEIKDSVVAGFQWATKEGA EIKDSVVAGFQWATKEGALCEENMRGVRFD K D S T K E 2 0 0 1 0 1 0 1 0 0 0 1 0 1 0 1 1 1 0 2 0 0 12 0 1307.651 P13639;Q8TA90;B4DPU3;Q6W6M8 P13639 677 688 EEF2 Elongation factor 2 yes no 2 0.045845 39.917 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5917000 0 5917000 0 0 0 5917000 0 5917000 2036 1264 2088 7495 11313 11313 1 DSYLILETLPTEYDSR DAEKLKPGDLVGVNKDSYLILETLPTEYDS SYLILETLPTEYDSRVKAMELVEAIVLPMN K D S S R V 0 1 0 2 0 0 2 0 0 1 3 0 0 0 1 2 2 0 2 0 0 0 16 0 1913.9258 E9PKD5;E9PM69;R4GNH3;A8K781;A0A140VK42;P17980;E9PMD8;E9PLG2;E9PN50 E9PKD5 138 153 PSMC3 26S protease regulatory subunit 6A yes no 2 8.1408E-14 150.09 4 0.41349 0.58408 19.031 3 Median 0.41349 0.58408 19.031 3 0 Median NaN NaN NaN 0 0 Median 18483000 11182000 7300900 18483000 11182000 7300900 0 0 0 2037 507 2089 7496;7497;7498;7499 11314;11315;11316;11317;11318;11319;11320 11319 7 DSYVGDEAQSKR GRPRHQGVMVGMGQKDSYVGDEAQSKRGIL GQKDSYVGDEAQSKRGILTLKYPIEHGIVT K D S K R G 1 1 0 2 0 1 1 1 0 0 0 1 0 0 0 2 0 0 1 1 0 0 12 1 1353.6161 B7Z6P1;P68133;P68032;A8K3K1;D2JYH4;P63267;P62736;B3KW67;Q7Z7J6;A6NL76;B4DUI8;C9JUM1;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B3KUD3;G5E9R0;E7EVS6;C9JZR7;A1E282;C9JTX5;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65 Q53GK6 51 62 ACTA1;ACTC1;ACTA2;ACTG2;ACTB;PS1TP5BP1;ACTG1 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2 0.0029259 67.726 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2038 1388;1420;914 2090 7500;7501 11321;11322 11322 2 DTAEGVSQELISAGLVDGR KKELNDIRFEFTPGRDTAEGVSQELISAGL GVSQELISAGLVDGRDLVIVAANLQKIVEE R D T G R D 2 1 0 2 0 1 2 3 0 1 2 0 0 0 0 2 1 0 0 2 0 0 19 0 1915.9487 A0A024R2M7;O95747 A0A024R2M7 459 477 OXSR1 Serine/threonine-protein kinase OSR1 yes no 2 0.00049766 83.692 1 0.41122 0.55317 NaN 1 Median 0.41122 0.55317 NaN 1 0 Median NaN NaN NaN 0 0 Median 1011100 662620 348440 1011100 662620 348440 0 0 0 2039 88 2091 7502 11323 11323 1 DTALETALNAK FQRQLRQEVVVCMRRDTALETALNAKAYKR CMRRDTALETALNAKAYKRSKRQSLREARI R D T A K A 3 0 1 1 0 0 1 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 11 0 1145.5928 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;Q59FZ6;A5D6X0 A7E2E1 427 437 SMARCA4 Transcription activator BRG1 yes no 2 1.3157E-06 86.67 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2040 403 2092 7503;7504 11324;11325 11325 2 DTCHELDELQLCK GADSEQADIARMLYKDTCHELDELQLCKNC YKDTCHELDELQLCKNCFYLSNARPDNWFC K D T C K N 0 0 0 2 2 1 2 0 1 0 3 1 0 0 0 0 1 0 0 0 0 0 13 0 1659.7233 Q5BJG6;B7Z3W2;J3QKD2;Q15326;Q6PJR5;B7Z2J6;E7ENI9 Q5BJG6 153 165 ZMYND11 Zinc finger MYND domain-containing protein 11 yes no 2;3 2.3169E-05 134.08 5 1.1566 1.4447 0.23577 2 Median 1.1566 1.4447 0.23577 2 0 Median NaN NaN NaN 0 0 Median 32983000 11726000 21257000 32983000 11726000 21257000 0 0 0 2041 906 2093 7505;7506;7507;7508;7509 11326;11327;11328;11329;11330 11326 5 DTDEADLVLAK ATDSCGDLMFLMKWKDTDEADLVLAKEANV MKWKDTDEADLVLAKEANVKCPQIVIAFYE K D T A K E 2 0 0 3 0 0 1 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 11 0 1188.5874 V9HWG0;P45973 V9HWG0 144 154 HEL25;CBX5 Chromobox protein homolog 5 yes no 2 1.0504E-06 118.18 1 2 0.31045 0.49614 0.11847 2 Median NaN NaN NaN 0 0 Median 0.31045 0.49614 0.11847 2 0 Median 96730000 71668000 25062000 3389500 0 3389500 93341000 71668000 21673000 2042 1341 2094 7510;7511;7512 11331;11332;11333;11334;11335 11335 5 DTDIQGFLK SLSAATTFEPLEPVKDTDIQGFLKNEKDNA PLEPVKDTDIQGFLKNEKDNALLSAIEESR K D T L K N 0 0 0 2 0 1 0 1 0 1 1 1 0 1 0 0 1 0 0 0 0 0 9 0 1035.5237 H3BVG0;Q8N1F7;A8K897;H3BV11;H3BRI8;H3BM93;H3BNN5 H3BVG0 95 103 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.00067734 73.26 1 1 0.33432 0.42533 NaN 1 Median 0.33432 0.42533 NaN 1 0 Median NaN NaN NaN 0 0 Median 6917300 5284500 1632900 6917300 5284500 1632900 0 0 0 2043 1111 2095 7513;7514 11336;11337 11337 2 DTDIVDEAIYYFK PIRSQFKGPAPRETKDTDIVDEAIYYFKAN TKDTDIVDEAIYYFKANVFFKNYEIKNEAD K D T F K A 1 0 0 3 0 0 1 0 0 2 0 1 0 1 0 0 1 0 2 1 0 0 13 0 1590.7454 Q2LE71;B2R4D5;O15145;B4DM63;F8VR50;C9JZD1 Q2LE71 38 50 ARPC3 Actin-related protein 2/3 complex subunit 3 yes no 2 7.4278E-17 164.97 5 1.0288 1.2877 15.47 3 Median 1.0288 1.2877 15.47 3 0 Median NaN NaN NaN 0 0 Median 37632000 14342000 23290000 37632000 14342000 23290000 0 0 0 2044 683 2096 7515;7516;7517;7518;7519 11338;11339;11340;11341;11342;11343;11344;11345 11340 8 DTDSEEEIREAFR IDFPEFLTMMARKMKDTDSEEEIREAFRVF MKDTDSEEEIREAFRVFDKDGNGYISAAEL K D T F R V 1 2 0 2 0 0 4 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 13 1 1595.7063 Q9BRL5;P0DP25;P0DP24;P0DP23;B4DJ51;B2RDW0;H0Y7A7;E7ETZ0;E7EMB3;G3V361;Q96HY3;A8K1M2;G3V226 Q9BRL5 79 91 CALM3;CALM2;CALM1 yes no 2;3 0.00025206 88.134 5 0.82887 1.1191 3.3053 5 Median 0.82887 1.1191 3.3053 5 0 Median NaN NaN NaN 0 0 Median 92252000 49156000 43095000 92252000 49156000 43095000 0 0 0 2045 741 2097 7520;7521;7522;7523;7524 11346;11347;11348;11349;11350;11351;11352 11348 7 DTEAGETFSSVQANLSK LAMLDEEPKTKKARKDTEAGETFSSVQANL EAGETFSSVQANLSKAEKHKYPHKVKTAQV K D T S K A 2 0 1 1 0 1 2 1 0 0 1 1 0 1 0 3 2 0 0 1 0 0 17 0 1782.8272 P35251;Q14756 P35251 244 260 RFC1;LLDBP Replication factor C subunit 1 yes no 2 8.6587E-62 231.74 6 1 0.72794 0.92181 19.125 4 Median 0.72794 0.92181 19.125 4 0 Median NaN NaN NaN 0 0 Median 26625000 16937000 9688000 21921000 12233000 9688000 4703400 4703400 0 2046 1318 2098 7525;7526;7527;7528;7529;7530;7531 11353;11354;11355;11356;11357;11358;11359;11360;11361;11362;11363;11364;11365 11358 13 DTEQYEREDFLIK TVYGSNDQDPYVTLKDTEQYEREDFLIKPS LKDTEQYEREDFLIKPSDNLIVCGRAEQDQ K D T I K P 0 1 0 2 0 1 3 0 0 1 1 1 0 1 0 0 1 0 1 0 0 0 13 1 1684.7944 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DJV5;Q86X79;Q05BL3;Q6PKI5;Q6PIN4;F8VZ56 Q9BV37 134 146 PWP1 Periodic tryptophan protein 1 homolog yes no 2 2.9101E-06 116.84 3 0.47614 0.63408 NaN 1 Median 0.47614 0.63408 NaN 1 0 Median NaN NaN NaN 0 0 Median 39703000 19102000 20602000 39703000 19102000 20602000 0 0 0 2047 273 2099 7532;7533;7534 11366;11367;11368;11369 11368 4 DTEQYEREDFLIKPSDNLIVCGR TVYGSNDQDPYVTLKDTEQYEREDFLIKPS DFLIKPSDNLIVCGRAEQDQCNLDVHVYNQ K D T G R A 0 2 1 3 1 1 3 1 0 2 2 1 0 1 1 1 1 0 1 1 0 0 23 2 2796.3389 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DJV5;Q86X79;Q05BL3;Q6PKI5;Q6PIN4;F8VZ56 Q9BV37 134 156 PWP1 Periodic tryptophan protein 1 homolog yes no 3 0.031526 19.044 1 0.58875 0.72552 NaN 1 Median 0.58875 0.72552 NaN 1 0 Median NaN NaN NaN 0 0 Median 7330700 4244300 3086300 7330700 4244300 3086300 0 0 0 2048 273 2100 7535 11370 11370 1 DTFEHDPSESIDEFNK QEESPLKSKSQEEPKDTFEHDPSESIDEFN TFEHDPSESIDEFNKSSATSGDIWPGLSAY K D T N K S 0 0 1 3 0 0 3 0 1 1 0 1 0 2 1 2 1 0 0 0 0 0 16 0 1908.8014 Q6DCA8;E9PK09;E9PQN2;E9PKI6;E9PK91;Q9NYF8;E9PJA7 Q6DCA8 189 204 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2 1.0646E-05 108.72 1 0.72565 0.89185 NaN 1 Median 0.72565 0.89185 NaN 1 0 Median NaN NaN NaN 0 0 Median 1378000 801780 576240 1378000 801780 576240 0 0 0 2049 1036 2101 7536 11371;11372 11372 2 DTFYDNFENEPILYGR ______________________________ TFYDNFENEPILYGRSYTWLCYEVKIKRGR R D T G R S 0 1 2 2 0 0 2 1 0 1 1 0 0 2 1 0 1 0 2 0 0 0 16 0 1991.8901 Q6ICH2;B2CML4;Q96AK3 Q6ICH2 15 30 bK150C2.9;APOBEC3DE;APOBEC3D DNA dC->dU-editing enzyme APOBEC-3D no no 2 2.8639E-13 145.31 4 0.72298 0.97271 14.253 3 Plateau 0.72298 0.97271 14.253 3 0 Plateau NaN NaN NaN 0 0 Median 16778000 9648400 7129300 16778000 9648400 7129300 0 0 0 2050 680 2102 7537;7538;7539;7540 11373;11374;11375;11376;11377;11378 11376 6 DTGIFLDLMHLK SAKASRARTKAGDLRDTGIFLDLMHLKKPG DLRDTGIFLDLMHLKKPGGFDISLFYRDII R D T L K K 0 0 0 2 0 0 0 1 1 1 3 1 1 1 0 0 1 0 0 0 0 0 12 0 1401.7326 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356 A0A024R1N4 195 206 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 1.9181E-11 141.91 6 2 0.56393 0.77075 7.9228 7 Median 0.59346 0.72688 7.4137 5 0 Median 0.51058 0.81439 7.7884 2 0 Median 197340000 123540000 73806000 66822000 42170000 24652000 130520000 81367000 49154000 2051 62 2103;2104 7541;7542;7543;7544;7545;7546;7547;7548 11379;11380;11381;11382;11383;11384;11385;11386;11387;11388;11389;11390;11391 11380 34 13 DTGKTPVEPEVAIHR ______________________________ DTGKTPVEPEVAIHRIRITLTSRNVKSLEK K D T H R I 1 1 0 1 0 0 2 1 1 1 0 1 0 0 2 0 2 0 0 2 0 0 15 1 1647.858 P60866;E5RJX2;E5RIP1 P60866 5 19 RPS20 40S ribosomal protein S20 yes no 3 2.1093E-08 103.66 3 0.82996 1.0954 19.759 2 Median 0.82996 1.0954 19.759 2 0 Median NaN NaN NaN 0 0 Median 44807000 25703000 19104000 44807000 25703000 19104000 0 0 0 2052 1389 2105 7549;7550;7551 11392;11393;11394;11395 11395 4 DTGNIFSEPVPLSEVPDYLDHIK FLILLRKTLEQLQEKDTGNIFSEPVPLSEV PVPLSEVPDYLDHIKKPMDFFTMKQNLEAY K D T I K K 0 0 1 3 0 0 2 1 1 2 2 1 0 1 3 2 1 0 1 2 0 0 23 0 2584.2697 P55201 P55201 648 670 BRPF1 Peregrin yes yes 3 8.8204E-14 117.55 4 0.83023 1.0388 8.6238 4 Median 0.83023 1.0388 8.6238 4 0 Median NaN NaN NaN 0 0 Median 51830000 28748000 23082000 51830000 28748000 23082000 0 0 0 2053 1379 2106 7552;7553;7554;7555 11396;11397;11398;11399;11400;11401;11402;11403;11404;11405;11406 11397 11 DTHDQLSEPSEVR HLPLEVAYQRGYLNKDTHDQLSEPSEVRSY NKDTHDQLSEPSEVRSYVDPSTDERLSYTQ K D T V R S 0 1 0 2 0 1 2 0 1 0 1 0 0 0 1 2 1 0 0 1 0 0 13 0 1511.6852 Q15149;D3DWL0;Q96IE3 Q15149 3969 3981 PLEC;PLEC1 Plectin yes no 2;3 2.4215E-20 188.27 8 2 0.61792 0.84707 41.265 9 Median 0.60634 0.82618 7.5829 8 0 Median 2.1812 2.8266 NaN 1 0 Median 253550000 154970000 98574000 246710000 153770000 92940000 6840800 1206600 5634200 2054 1507 2107 7556;7557;7558;7559;7560;7561;7562;7563;7564;7565 11407;11408;11409;11410;11411;11412;11413;11414;11415;11416;11417;11418;11419;11420 11407 14 DTIIDVVGAPLTPNSR AEPAVTEPGLGPDPKDTIIDVVGAPLTPNS TIIDVVGAPLTPNSRKRRESASSSSSVKKA K D T S R K 1 1 1 2 0 0 0 1 0 2 1 0 0 0 2 1 2 0 0 2 0 0 16 0 1666.889 B4DQG8;Q9NPF5 B4DQG8 424 439 DMAP1 DNA methyltransferase 1-associated protein 1 yes no 2 0.0010865 113.24 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3363900 3363900 0 3363900 3363900 0 0 0 0 2055 850 2108 7566 11421 11421 1 DTILAELLQIHK NSEKKKKRDTPMLPKDTILAELLQIHKEHI LPKDTILAELLQIHKEHIVGYHEHDSLLDH K D T H K E 1 0 0 1 0 1 1 0 1 2 3 1 0 0 0 0 1 0 0 0 0 0 12 0 1392.7977 A4LAA3;P46100;B4DHH8;B4DLE1;B4DLW1 A4LAA3 2234 2245 ATRX Transcriptional regulator ATRX yes no 2 7.7531E-33 217.66 4 2 0.65506 0.83327 31.257 6 Median 0.61649 0.76886 7.8978 4 0 Median 0.95318 1.4416 6.0998 2 0 Median 74593000 42295000 32298000 43722000 25358000 18364000 30871000 16937000 13934000 2056 556 2109 7567;7568;7569;7570;7571;7572 11422;11423;11424;11425;11426;11427;11428;11429;11430 11423 9 DTLAFLMIHLQR AAMYQAVGELPQANRDTLAFLMIHLQRVAQ ANRDTLAFLMIHLQRVAQSPHTKMDVANLA R D T Q R V 1 1 0 1 0 1 0 0 1 1 3 0 1 1 0 0 1 0 0 0 0 0 12 0 1456.7861 B2RE34;A0A024R136;Q9H0H5;Q9H9L9;H0YIK5 B2RE34 471 482 RACGAP1 Rac GTPase-activating protein 1 yes no 2 0.0026746 51.528 1 0.92091 1.1819 NaN 1 Median NaN NaN NaN 0 0 Median 0.92091 1.1819 NaN 1 0 Median 3645800 1780300 1865500 0 0 0 3645800 1780300 1865500 2057 49 2110 7573 11431 11431 7 1 DTLALLQK LKRAKKKQLRSIEKRDTLALLQKQPPQQPA LRSIEKRDTLALLQKQPPQQPAAKI_____ R D T Q K Q 1 0 0 1 0 1 0 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 8 0 900.52803 Q9H6F5 Q9H6F5 343 350 CCDC86 Coiled-coil domain-containing protein 86 yes yes 2 0.020152 57.471 1 0.29646 0.41808 NaN 1 Median NaN NaN NaN 0 0 Median 0.29646 0.41808 NaN 1 0 Median 4490600 3479900 1010700 0 0 0 4490600 3479900 1010700 2058 1737 2111 7574 11432 11432 1 DTLFCYHK GCPLPEACELYYVNRDTLFCYHKASEVFLQ ELYYVNRDTLFCYHKASEVFLQRLMALYVA R D T H K A 0 0 0 1 1 0 0 0 1 0 1 1 0 1 0 0 1 0 1 0 0 0 8 0 1082.4855 Q05CW7;Q9H0A0;A0A087WV29 Q9H0A0 513 520 NAT10 N-acetyltransferase 10 no no 2 0.0004142 124.89 3 0.83708 1.0763 5.9361 3 Median 0.83708 1.0763 5.9361 3 0 Median NaN NaN NaN 0 0 Median 241130000 129690000 111440000 241130000 129690000 111440000 0 0 0 2059 1730;1443 2112 7575;7576;7577 11433;11434;11435;11436;11437;11438 11434 6 DTLGLFLR TGKTARAIRDMCLEKDTLGLFLREGSASTE RDMCLEKDTLGLFLREGSASTEVLRTEAEQ K D T L R E 0 1 0 1 0 0 0 1 0 0 3 0 0 1 0 0 1 0 0 0 0 0 8 0 933.52837 O75643;A4FU77;Q9H8B9 O75643 746 753 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.004805 133.47 4 1 0.55871 0.75133 56.764 4 Median 0.49334 0.67001 23.623 3 0 Median 1.3043 1.9397 NaN 1 0 Median 39428000 24973000 14456000 32779000 21442000 11337000 6649100 3531100 3118100 2060 1206 2113 7578;7579;7580;7581;7582 11439;11440;11441;11442;11443;11444 11441 6 DTLVADNLDQATR VKDEKIRQAFYFALRDTLVADNLDQATRVA LRDTLVADNLDQATRVAYQKDRRWRVVTLQ R D T T R V 2 1 1 3 0 1 0 0 0 0 2 0 0 0 0 0 2 0 0 1 0 0 13 0 1430.7001 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 714 726 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.8069E-45 193.96 4 2 0.66995 0.96206 7.6371 6 Median 0.67693 0.93904 3.7045 4 0 Median 0.65126 1.0769 1.4769 2 0 Median 957110000 567680000 389430000 482850000 283360000 199500000 474260000 284330000 189940000 2061 1760 2114 7583;7584;7585;7586;7587;7588 11445;11446;11447;11448;11449;11450;11451;11452;11453;11454;11455 11450 11 DTLYEAVR ______________________________ MSSKVSRDTLYEAVREVLHGNQRKRRKFLE R D T V R E 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 8 0 965.48181 P62906 P62906 8 15 RPL10A 60S ribosomal protein L10a yes yes 2 8.1105E-05 143.02 4 2 0.77571 1.0593 5.9987 6 Median 0.80312 1.1023 4.8258 4 0 Median 0.61633 1.0066 3.2568 2 0 Median 1095400000 617780000 477630000 914100000 505390000 408710000 181310000 112390000 68921000 2062 1415 2115 7589;7590;7591;7592;7593;7594 11456;11457;11458;11459;11460;11461;11462;11463;11464;11465 11457 10 DTMSDLPEVR ITRLSSGPFRTITVRDTMSDLPEVRNGASA TITVRDTMSDLPEVRNGASALEISYNGEPQ R D T V R N 0 1 0 2 0 0 1 0 0 0 1 0 1 0 1 1 1 0 0 1 0 0 10 0 1161.5336 A0A024R7E3;P26358;Q59FP7;B3KVA0;K7ENW7;I6L9H2 A0A024R7E3 1431 1440 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 no no 2 0.011247 44.98 2 0.96756 1.2694 5.6855 2 Median NaN NaN NaN 0 0 Median 0.96756 1.2694 5.6855 2 0 Median 10141000 4745800 5395200 0 0 0 10141000 4745800 5395200 2063 176;1129 2116 7595;7596 11466;11467 11466 78 2 DTNGENIAESLVAEGLATR KTPQGREYGMIYLGKDTNGENIAESLVAEG ENIAESLVAEGLATRREGMRANNPEQNRLS K D T T R R 3 1 2 1 0 0 3 2 0 1 2 0 0 0 0 1 2 0 0 1 0 0 19 0 1958.9545 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B3KU67;I6TRR8 A0A140VK49 117 135 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 2.1429E-05 100.68 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2064 508 2117 7597;7598 11468;11469 11469 2 DTNIDHGQPRPPSNR IDCSSTIMLDNIVRKDTNIDHGQPRPPSNR DTNIDHGQPRPPSNRTVQSPNSSVPSPGLA K D T N R T 0 2 2 2 0 1 0 1 1 1 0 0 0 0 3 1 1 0 0 0 0 0 15 1 1702.8135 A0A024R784;O15164;B4DYZ9 A0A024R784 608 622 TRIM24 Transcription intermediary factor 1-alpha yes no 3 0.018622 53.136 1 0.50908 0.6785 NaN 1 Median 0.50908 0.6785 NaN 1 0 Median NaN NaN NaN 0 0 Median 1830700 1195100 635620 1830700 1195100 635620 0 0 0 2065 171 2118 7599 11470 11470 1 DTPITHISFHPK RTVQKQGFHHLWLQRDTPITHISFHPKRPM LQRDTPITHISFHPKRPMHILLHDAYMFCI R D T P K R 0 0 0 1 0 0 0 0 2 2 0 1 0 1 2 1 2 0 0 0 0 0 12 0 1391.7197 Q969X6;H3BSH7;A0A0J9YWM9;A0A0J9YXV4;A0A0J9YWK2 Q969X6 580 591 CIRH1A Cirhin yes no 2;3 0.0039827 75.695 6 2 0.89818 1.126 10.673 8 Median 0.9322 1.1779 6.8987 6 0 Median 0.6597 0.98761 12.296 2 0 Median 163830000 85047000 78785000 143470000 72094000 71371000 20367000 12953000 7413700 2066 1680 2119 7600;7601;7602;7603;7604;7605;7606;7607 11471;11472;11473;11474;11475;11476;11477;11478;11479;11480;11481;11482;11483 11480 13 DTQSVSAIGEEK RTVAVDWAVAKDKYKDTQSVSAIGEEKSHE KYKDTQSVSAIGEEKSHESKHQESVKKKGR K D T E K S 1 0 0 1 0 1 2 1 0 1 0 1 0 0 0 2 1 0 0 1 0 0 12 0 1262.599 A0A024R753;Q9NW13;B4DJ90;C9JAA9;H7C5G8 A0A024R753 197 208 RBM28 RNA-binding protein 28 yes no 2 5.0461E-21 150.1 4 2 0.8178 1.2353 2.1595 3 Median 0.99774 1.2593 NaN 1 0 Median 0.8077 1.2206 1.6898 2 0 Median 43927000 20218000 23709000 12954000 5343600 7610200 30973000 14874000 16098000 2067 169 2120 7608;7609;7610;7611;7612;7613 11484;11485;11486;11487;11488;11489;11490;11491;11492 11486 9 DTQTSITDSCAVYR GKTLLFVRLLTGLYRDTQTSITDSCAVYRV RDTQTSITDSCAVYRVNNNRGNSLTLIDLP R D T Y R V 1 1 0 2 1 1 0 0 0 1 0 0 0 0 0 2 3 0 1 1 0 0 14 0 1615.7148 Q549N5;Q9Y5M8 Q549N5 91 104 SRPRB Signal recognition particle receptor subunit beta yes no 2 3.1779E-13 144.7 4 1 3.321 4.3808 NaN 1 Median NaN NaN NaN 0 0 Median 3.321 4.3808 NaN 1 0 Median 10197000 8490500 1706800 7770900 7770900 0 2426400 719580 1706800 2068 1545 2121 7614;7615;7616;7617;7618 11493;11494;11495;11496;11497 11493 5 DTRDQFLDTLQAHGHDVNSFVR VLQVLSGDQLEAAARDTRDQFLDTLQAHGH DTLQAHGHDVNSFVRSRVLQLFTRIVQQKA R D T V R S 1 2 1 4 0 2 0 1 2 0 2 0 0 2 0 1 2 0 0 2 0 0 22 1 2570.2262 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 360 381 NCAPD2 Condensin complex subunit 1 yes no 4 0.00042071 56.404 4 0.72065 0.98071 4.9973 4 Median 0.72065 0.98071 4.9973 4 0 Median NaN NaN NaN 0 0 Median 90387000 49154000 41233000 90387000 49154000 41233000 0 0 0 2069 757 2122 7619;7620;7621;7622 11498;11499;11500;11501;11502;11503;11504 11504 7 DTSASAVAVGLK KMQLLEIITTEKTSKDTSASAVAVGLKQGK TSKDTSASAVAVGLKQGKVIIVVKDGPGFY K D T L K Q 3 0 0 1 0 0 0 1 0 0 1 1 0 0 0 2 1 0 0 2 0 0 12 0 1117.5979 B4DDZ5;H0YFD6;E9KL44;P40939;B4DRH6 E9KL44 520 531 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase no no 2 0.00057303 96.331 2 1 0.58101 0.7369 27.087 3 Median 0.57448 0.72646 2.0166 2 0 Median 0.8685 1.1606 NaN 1 0 Median 20810000 12874000 7936000 17482000 10831000 6651800 3327800 2043600 1284200 2070 1020;797 2123 7623;7624;7625 11505;11506;11507 11506 3 DTSATTALELVAGER RNCVKGLVASLISVKDTSATTALELVAGER DTSATTALELVAGERLYNVVVDTEVTGKKL K D T E R L 3 1 0 1 0 0 2 1 0 0 2 0 0 0 0 1 3 0 0 1 0 0 15 0 1532.7682 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 534 548 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 1.4229E-74 255.41 5 2 0.66834 0.92956 7.6655 5 Median 0.67487 0.92864 2.709 4 0 Median 0.66089 1.0961 NaN 1 0 Median 719720000 454330000 265400000 519840000 301500000 218340000 199880000 152820000 47056000 2071 50 2124 7626;7627;7628;7629;7630;7631;7632 11508;11509;11510;11511;11512;11513;11514;11515;11516;11517;11518;11519;11520;11521 11509 14 DTSFLGSDDIGNIDVREPELEDLTR QSALYDALFSSQSPKDTSFLGSDDIGNIDV GNIDVREPELEDLTRYDVGAIRAHNGSLQH K D T T R Y 0 2 1 5 0 0 3 2 0 2 3 0 0 1 1 2 2 0 0 1 0 0 25 1 2805.3305 D3DX73;P49792 D3DX73 397 421 hCG_1994636;RANBP2 E3 SUMO-protein ligase RanBP2 yes no 3 2.7969E-08 87.352 2 0.50577 0.68735 5.973 2 Median 0.50577 0.68735 5.973 2 0 Median NaN NaN NaN 0 0 Median 11733000 7754200 3978900 11733000 7754200 3978900 0 0 0 2072 987 2125 7633;7634 11522;11523;11524 11523 3 DTSLYRPALEELRR LQDELEMLVERLGEKDTSLYRPALEELRRQ KDTSLYRPALEELRRQIRSSTTSMTSVPKP K D T R R Q 1 3 0 1 0 0 2 0 0 0 3 0 0 0 1 1 1 0 1 0 0 0 14 2 1717.9111 Q59EG8;Q13200;B4DM22;Q9NSM5;C9JPC0;H7C2Q3 Q59EG8 72 85 PSMD2;DKFZp564A2282 26S proteasome non-ATPase regulatory subunit 2 yes no 3 0.046682 51.726 1 0.24599 0.3324 NaN 1 Median 0.24599 0.3324 NaN 1 0 Median NaN NaN NaN 0 0 Median 20030000 17250000 2780300 20030000 17250000 2780300 0 0 0 2073 1465 2126 7635 11525 11525 1 DTSSDPLLELR CVDSGILRVWHDKDKDTSSDPLLELRVGPG DKDKDTSSDPLLELRVGPGVCRMRQDPAHP K D T L R V 0 1 0 2 0 0 1 0 0 0 3 0 0 0 1 2 1 0 0 0 0 0 11 0 1244.6248 Q6RFH5;E9PS41;B4E018 Q6RFH5 118 128 WDR74 WD repeat-containing protein 74 yes no 2 0.00017469 105.98 3 2 0.74604 1.0292 6.7462 5 Median 0.74604 0.99395 3.5906 3 0 Median 0.72359 1.0886 7.9264 2 0 Median 78643000 42039000 36603000 46249000 24672000 21576000 32394000 17367000 15027000 2074 1598 2127 7636;7637;7638;7639;7640 11526;11527;11528;11529;11530;11531;11532;11533 11530 8 DTSVEGSEMVPGK QVYSFGCNDEGALGRDTSVEGSEMVPGKVE GRDTSVEGSEMVPGKVELQEKVVQVSAGDS R D T G K V 0 0 0 1 0 0 2 2 0 0 0 1 1 0 1 2 1 0 0 2 0 0 13 0 1334.6024 Q5T081;A0A0S2Z3I4;A0A0S2Z404;P18754;C9JW69;C9JRH2;C9JMJ4;C9J3R0;C9JQZ4 Q5T081 102 114 RCC1 Regulator of chromosome condensation yes no 2 2.3042E-22 151.22 2 0.4486 0.68591 1.5434 2 Median NaN NaN NaN 0 0 Median 0.4486 0.68591 1.5434 2 0 Median 39662000 27957000 11705000 0 0 0 39662000 27957000 11705000 2075 453 2128 7641;7642 11534;11535;11536;11537 11536 156 4 DTSVEGSEMVPGKVELQEK QVYSFGCNDEGALGRDTSVEGSEMVPGKVE EGSEMVPGKVELQEKVVQVSAGDSHTAALT R D T E K V 0 0 0 1 0 1 4 2 0 0 1 2 1 0 1 2 1 0 0 3 0 0 19 1 2060.9936 Q5T081;A0A0S2Z3I4;A0A0S2Z404;P18754;C9JW69;C9JRH2;C9JMJ4;C9J3R0;C9JQZ4 Q5T081 102 120 RCC1 Regulator of chromosome condensation yes no 3 4.1151E-13 85.231 2 0.43675 0.69266 NaN 1 Median NaN NaN NaN 0 0 Median 0.43675 0.69266 NaN 1 0 Median 32987000 28034000 4952700 0 0 0 32987000 28034000 4952700 2076 453 2129 7643;7644 11538;11539 11538 156 2 DTTIMELR QERETFSSAEGTVDKDTTIMELRDRLPKKQ AEGTVDKDTTIMELRDRLPKKQQASASTDG K D T L R D 0 1 0 1 0 0 1 0 0 1 1 0 1 0 0 0 2 0 0 0 0 0 8 0 977.48518 A4LAA3;P46100;A0A096LNL9;A0A096LNW1;B7Z1D8 A4LAA3 898 905 ATRX Transcriptional regulator ATRX yes no 2 0.027531 42.287 1 0.84867 1.2142 NaN 1 Median NaN NaN NaN 0 0 Median 0.84867 1.2142 NaN 1 0 Median 8985400 4686500 4299000 0 0 0 8985400 4686500 4299000 2077 556 2130 7645 11540 11540 1 DTVILPIK WSDIAGLDDVITDLKDTVILPIKKKHLFEN DVITDLKDTVILPIKKKHLFENSRLLQPPK K D T I K K 0 0 0 1 0 0 0 0 0 2 1 1 0 0 1 0 1 0 0 1 0 0 8 0 897.55352 Q8NBU5;B4E2J1 Q8NBU5 105 112 ATAD1 ATPase family AAA domain-containing protein 1 yes no 2 0.029378 52.018 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1708500 1708500 0 1708500 1708500 0 0 0 0 2078 1649 2131 7646 11541 11541 1 DTVTISGPQAPVFEFVEQLRK QRCPPGVVPACHNSKDTVTISGPQAPVFEF GPQAPVFEFVEQLRKEGVFAKEVRTGGMAF K D T R K E 1 1 0 1 0 2 2 1 0 1 1 1 0 2 2 1 2 0 0 3 0 0 21 1 2360.2376 A0A0U1RQF0;P49327 A0A0U1RQF0 647 667 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 1.2398E-13 123 4 0.54343 0.71461 25.691 4 Median 0.54343 0.71461 25.691 4 0 Median NaN NaN NaN 0 0 Median 75104000 44259000 30844000 75104000 44259000 30844000 0 0 0 2079 486 2132 7647;7648;7649;7650 11542;11543;11544;11545;11546;11547;11548;11549 11542 8 DVACGANHTLVLDSQKR TKDGQILPVPNVVVRDVACGANHTLVLDSQ ACGANHTLVLDSQKRVFSWGFGGYGRLGHA R D V K R V 2 1 1 2 1 1 0 1 1 0 2 1 0 0 0 1 1 0 0 2 0 0 17 1 1882.9319 A5PLK7;A0A024RAC5;Q9P258 A5PLK7 269 285 RCC2 Protein RCC2 yes no 3 0.0014559 33.308 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1333600 1333600 0 1333600 1333600 0 0 0 0 2080 239 2133 7651 11550 11550 1 DVAEEIANYRPTLDTLHEQASALPQEHAESPDVR GHDEYSTQSLVKKHKDVAEEIANYRPTLDT ASALPQEHAESPDVRGRLSGIEERYKEVAE K D V V R G 5 2 1 3 0 2 5 0 2 1 3 0 0 0 3 2 2 0 1 2 0 0 34 1 3800.8242 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24 B2ZZ89 788 821 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 4;5 6.1616E-14 66.399 3 0.76774 1.0342 3.7638 3 Plateau 0.76774 1.0342 3.7638 3 0 Plateau NaN NaN NaN 0 0 Median 111510000 59106000 52400000 111510000 59106000 52400000 0 0 0 2081 346 2134 7652;7653;7654 11551;11552;11553;11554;11555 11554 5 DVAENAGLFIDFVQR LTPHARRAVAHTLPKDVAENAGLFIDFVQR DVAENAGLFIDFVQRQIHNQDLPLSMIVAI K D V Q R Q 2 1 1 2 0 1 1 1 0 1 1 0 0 2 0 0 0 0 0 2 0 0 15 0 1692.8471 Q7Z3K3;B4DSK8 Q7Z3K3 1096 1110 POGZ Pogo transposable element with ZNF domain yes no 2 3.9249E-07 127.37 4 0.86342 1.1674 15.049 4 Median 0.86342 1.1674 15.049 4 0 Median NaN NaN NaN 0 0 Median 19525000 10343000 9182300 19525000 10343000 9182300 0 0 0 2082 1614 2135 7655;7656;7657;7658 11556;11557;11558;11559;11560;11561;11562 11556 7 DVAEVDTVRR RELYQQLQRGERSVRDVAEVDTVRRALRGA ERSVRDVAEVDTVRRALRGANVIAGVWLEE R D V R R A 1 2 0 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 3 0 0 10 1 1158.5993 Q15149;D3DWL0 Q15149 3146 3155 PLEC;PLEC1 Plectin yes no 2 6.597E-05 124.92 3 0.91673 1.2415 39.531 3 Plateau 0.91673 1.2415 39.531 3 0 Plateau NaN NaN NaN 0 0 Median 64090000 40458000 23633000 64090000 40458000 23633000 0 0 0 2083 1507 2136 7659;7660;7661 11563;11564;11565;11566 11566 4 DVAIIELNENEENQVTR QKHLDYITQACLKNKDVAIIELNENEENQV AIIELNENEENQVTRDIVENWSVEEQAMEM K D V T R D 1 1 3 1 0 1 4 0 0 2 1 0 0 0 0 0 1 0 0 2 0 0 17 0 1984.9702 Q9UIF8;Q8NC87 Q9UIF8 1764 1780 BAZ2B Bromodomain adjacent to zinc finger domain protein 2B yes no 2 5.1122E-10 130.1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2084 1785 2137 7662 11567 11567 1 DVASEVNLTAYKPK LRFIPDDITFDDEPKDVASEVNLTAYKPKY KDVASEVNLTAYKPKYFTSAAMGTSTVEIT K D V P K Y 2 0 1 1 0 0 1 0 0 0 1 2 0 0 1 1 1 0 1 2 0 0 14 1 1533.8039 Q9H501;Q05C10;A0JLU5;A0A087WX71 Q9H501 482 495 ESF1 ESF1 homolog yes no 2 9.4357E-44 202.05 3 1 0.96913 1.1737 24.062 3 Plateau 0.81097 0.99636 23.168 2 0 Median 0.88134 1.352 NaN 1 0 Median 16080000 7261800 8818600 10595000 5032500 5562200 5485700 2229300 3256400 2085 1734 2138 7663;7664;7665;7666 11568;11569;11570;11571;11572 11568 5 DVAYQYVK KTTWHRISVFRPGLRDVAYQYVKKRSRIYL VFRPGLRDVAYQYVKKRSRIYLEGKIDYGE R D V V K K 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 2 2 0 0 8 0 984.49165 Q567R6;A4D1U3;Q04837;C9K0U8;A0A0G2JLD8;E7EUY5;B7Z268 Q567R6 96 103 SSBP1 Single-stranded DNA-binding protein;Single-stranded DNA-binding protein, mitochondrial yes no 2 0.02369 56.091 1 2 0.88077 1.3265 6.3056 2 Median NaN NaN NaN 0 0 Median 0.88077 1.3265 6.3056 2 0 Median 29650000 17743000 11907000 6751000 6751000 0 22899000 10992000 11907000 2086 550 2139 7667;7668;7669 11573;11574;11575 11573 3 DVDEAHYAYSFK ERAKLNITPTKKGRKDVDEAHYAYSFKYLK GRKDVDEAHYAYSFKYLKNKPVKELRDDQF K D V F K Y 2 0 0 2 0 0 1 0 1 0 0 1 0 1 0 1 0 0 2 1 0 0 12 0 1443.6307 Q7KZ85 Q7KZ85 627 638 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.00013957 81.017 1 1 0.76516 0.98067 NaN 1 Median 0.76516 0.98067 NaN 1 0 Median NaN NaN NaN 0 0 Median 7298100 2993500 4304700 5160500 2993500 2167100 2137600 0 2137600 2087 1609 2140 7670;7671 11576;11577;11578 11576 3 DVDFEGTDEPIFGK GKLQSESTNNGKNKRDVDFEGTDEPIFGKK RDVDFEGTDEPIFGKKPRIEESITEDLSLA R D V G K K 0 0 0 3 0 0 2 2 0 1 0 1 0 2 1 0 1 0 0 1 0 0 14 0 1567.7042 P42285;A8K6I4;H0Y8U3 P42285 65 78 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 5.2514E-07 124.42 4 2 0.68362 0.86172 22.707 6 Median 0.74497 0.94306 11.403 4 0 Median 0.42797 0.64255 13.196 2 0 Median 47957000 30672000 17284000 26147000 14672000 11475000 21810000 16000000 5809700 2088 1336 2141 7672;7673;7674;7675;7676;7677 11579;11580;11581;11582;11583;11584;11585;11586;11587 11586 8 DVDFMYVELIQR GYGLFAGPCKVINAKDVDFMYVELIQRCKQ NAKDVDFMYVELIQRCKQMFLTQTDTGDDR K D V Q R C 0 1 0 2 0 1 1 0 0 1 1 0 1 1 0 0 0 0 1 2 0 0 12 0 1526.7439 P78527;B4DL41 P78527 380 391 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.0079546 109.59 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1263600 1263600 0 1263600 1263600 0 0 0 0 2089 1427 2142 7678;7679 11588;11589 11588 2 DVDGAYMTK NKRTNAENEFVTIKKDVDGAYMTKVDLQAK FVTIKKDVDGAYMTKVDLQAKLDNLQQEID K D V T K V 1 0 0 2 0 0 0 1 0 0 0 1 1 0 0 0 1 0 1 1 0 0 9 0 998.4379 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 290 298 KRT1 Keratin, type II cytoskeletal 1 no no 2 0.030508 48.423 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6449900 6449900 0 0 0 0 6449900 6449900 0 + 2090 1113;1114 2143 7680 11590 11590 1 DVDIIDHHDNTYTVK LDVQFSGLTKGDAVRDVDIIDHHDNTYTVK DVDIIDHHDNTYTVKYTPVQQGPVGVNVTY R D V V K Y 0 0 1 4 0 0 0 0 2 2 0 1 0 0 0 0 2 0 1 2 0 0 15 0 1783.8377 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 922 936 FLNA Filamin-A yes no 3 5.1474E-11 128.96 3 0.89204 1.1177 4.7418 3 Median 0.89204 1.1177 4.7418 3 0 Median NaN NaN NaN 0 0 Median 127610000 67478000 60130000 127610000 67478000 60130000 0 0 0 2091 1287 2144 7681;7682;7683 11591;11592;11593;11594;11595;11596 11595 6 DVDLEFLAK VAILKANLRKSPVAKDVDLEFLAKMTNGFS KSPVAKDVDLEFLAKMTNGFSGADLTEICQ K D V A K M 1 0 0 2 0 0 1 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 9 0 1048.5441 V9HW80;P55072;Q96IF9;Q9NTC4;Q0IIN5 V9HW80 669 677 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 2 0.012021 60.436 1 0.74085 0.94831 NaN 1 Median 0.74085 0.94831 NaN 1 0 Median NaN NaN NaN 0 0 Median 3123600 1901700 1221900 3123600 1901700 1221900 0 0 0 2092 1376 2145 7684 11597 11597 1 DVDSEISDLENEVENK RYYSSENTRPKFLSRDVDSEISDLENEVEN VDSEISDLENEVENKTAQILNLQQHLSALE R D V N K T 0 0 2 3 0 0 4 0 0 1 1 1 0 0 0 2 0 0 0 2 0 0 16 0 1833.8116 Q96SB8;C9JMN1 Q96SB8 663 678 SMC6 Structural maintenance of chromosomes protein 6 yes no 2 1.2817E-06 75.89 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7545100 0 7545100 0 0 0 7545100 0 7545100 2093 1700 2146 7685 11598 11598 1 DVDTIFECK CFRSGTKQLKHILLKDVDTIFECKLCRSLF KHILLKDVDTIFECKLCRSLFRGLPNLITH K D V C K L 0 0 0 2 1 0 1 0 0 1 0 1 0 1 0 0 1 0 0 1 0 0 9 0 1125.5012 Q2TB10;C9JHX9;A0A087WXB4;C9K0M9;C9JLY3 Q2TB10 64 72 ZNF800 Zinc finger protein 800 yes no 2 0.00091573 114.28 3 0.84552 1.0646 9.8765 3 Median 0.84552 1.0646 9.8765 3 0 Median NaN NaN NaN 0 0 Median 12788000 6518800 6269500 12788000 6518800 6269500 0 0 0 2094 1530 2147 7686;7687;7688 11599;11600;11601;11602 11601 4 DVDTQEFNLEK HNKNTKQANPSVLERDVDTQEFNLEKARLE VLERDVDTQEFNLEKARLEVHRFGITGYGK R D V E K A 0 0 1 2 0 1 2 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 11 0 1336.6147 Q5TBH9;Q8NDD1;B4E0F7 Q5TBH9 160 170 C1orf131 Uncharacterized protein C1orf131 yes no 2 2.4986E-05 112.36 1 2 0.83184 1.271 6.3758 3 Median 1.0948 1.3847 NaN 1 0 Median 0.81998 1.2465 2.7531 2 0 Median 46735000 23471000 23264000 10048000 4880600 5167100 36687000 18590000 18097000 2095 1574 2148 7689;7690;7691 11603;11604;11605;11606;11607 11607 5 DVDTYYLSNLVK GLSIIPARFTRVLPRDVDTYYLSNLVKWFI LPRDVDTYYLSNLVKWFIGTFTVNAELSAS R D V V K W 0 0 1 2 0 0 0 0 0 0 2 1 0 0 0 1 1 0 2 2 0 0 12 0 1428.7137 A0A024R2M8;X5DRB1;A8K146;Q01831;D9I4E1;D2CPI9;D2CPJ0 A0A024R2M8 248 259 XPC DNA repair protein complementing XP-C cells yes no 2 2.9777E-16 145.25 2 2 0.73004 1.0018 7.6828 4 Median 0.7705 0.96851 1.6084 2 0 Median 0.69377 1.08 7.4658 2 0 Median 85987000 47517000 38471000 29424000 15715000 13709000 56564000 31802000 24762000 2096 89 2149 7692;7693;7694;7695 11608;11609;11610;11611;11612;11613 11610 6 DVEDFLSPLLGK TVIRKVEGDIWALQKDVEDFLSPLLGKTPV LQKDVEDFLSPLLGKTPVTQVNEVTGTLRI K D V G K T 0 0 0 2 0 0 1 1 0 0 3 1 0 1 1 1 0 0 0 1 0 0 12 0 1331.6973 A0A024R578;Q13405;H0YDP7;Q59GE9 A0A024R578 123 134 MRPL49 39S ribosomal protein L49, mitochondrial yes no 2 1.3261E-11 123.86 3 0.48128 0.62083 15.402 3 Median 0.48128 0.62083 15.402 3 0 Median NaN NaN NaN 0 0 Median 10797000 7180300 3616600 10797000 7180300 3616600 0 0 0 2097 136 2150 7696;7697;7698 11614;11615;11616;11617;11618;11619 11616 6 DVEDVPITVE LSPEIRRELQSAVPRDVEDVPITVE_____ SAVPRDVEDVPITVE_______________ R D V V E - 0 0 0 2 0 0 2 0 0 1 0 0 0 0 1 0 1 0 0 3 0 0 10 0 1114.5394 Q13895 Q13895 428 437 BYSL Bystin yes yes 1 0.010654 114.28 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1656300 0 0 1656300 0 0 0 0 0 2098 1480 2151 7699;7700 11620;11621 11621 2 DVEGSTSPQIGDK YDDCGVKLTIAFQAKDVEGSTSPQIGDKVE AKDVEGSTSPQIGDKVEFSISDKQRPGQQV K D V D K V 0 0 0 2 0 1 1 2 0 1 0 1 0 0 1 2 1 0 0 1 0 0 13 0 1331.6205 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0;Q9UG93 Q9GZV0 445 457 CSDE1;UNR;DKFZp586J0620 Cold shock domain-containing protein E1 yes no 2 0.0004484 84.658 2 0.47475 0.57814 NaN 1 Median 0.47475 0.57814 NaN 1 0 Median NaN NaN NaN 0 0 Median 5468500 4189500 1279000 5468500 4189500 1279000 0 0 0 2099 31 2152 7701;7702 11622;11623;11624;11625 11623 4 DVEGSTSPQIGDKVEFSISDK YDDCGVKLTIAFQAKDVEGSTSPQIGDKVE SPQIGDKVEFSISDKQRPGQQVATCVRLLG K D V D K Q 0 0 0 3 0 1 2 2 0 2 0 2 0 1 1 4 1 0 0 2 0 0 21 1 2237.0699 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0;Q9UG93 Q9GZV0 445 465 CSDE1;UNR;DKFZp586J0620 Cold shock domain-containing protein E1 yes no 3 9.9576E-12 80.277 3 2 0.60127 0.74209 24.493 3 Median 0.60127 0.74209 24.493 3 0 Median NaN NaN NaN 0 0 Median 49864000 25751000 24114000 42785000 25751000 17034000 7079800 0 7079800 2100 31 2153 7703;7704;7705;7706;7707 11626;11627;11628;11629;11630;11631;11632 11628 7 DVESYIHR DIPEVDLVIQSSPPKDVESYIHRSGRTGRA IQSSPPKDVESYIHRSGRTGRAGRTGVCIC K D V H R S 0 1 0 1 0 0 1 0 1 1 0 0 0 0 0 1 0 0 1 1 0 0 8 0 1017.488 Q9NR30 Q9NR30 517 524 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.0013406 120.49 4 2 0.57476 0.85801 10.51 6 Median 0.66125 0.91064 13.18 4 0 Median 0.50484 0.82206 1.0719 2 0 Median 425790000 269130000 156660000 279660000 173770000 105880000 146130000 95358000 50774000 2101 1756 2154 7708;7709;7710;7711;7712;7713 11633;11634;11635;11636;11637;11638;11639;11640;11641;11642 11633 10 DVFAQVR IGAVLAHKGYFREARDVFAQVREATADISD KGYFREARDVFAQVREATADISDVWLNLAH R D V V R E 1 1 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 7 0 833.43955 A8K6X9;Q6PD62 A8K6X9 668 674 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2 0.037687 91.093 1 0.52687 0.70824 NaN 1 Median 0.52687 0.70824 NaN 1 0 Median NaN NaN NaN 0 0 Median 8194100 4451400 3742700 8194100 4451400 3742700 0 0 0 2102 629 2155 7714 11643 11643 1 DVFASEVTPSDLQK LTTNVTEQTEKDGDKDVFASEVTPSDLQKQ KDVFASEVTPSDLQKQMGNLEDAETKDLLV K D V Q K Q 1 0 0 2 0 1 1 0 0 0 1 1 0 1 1 2 1 0 0 2 0 0 14 0 1534.7515 Q8WYP5;B3KVE5;B3KTD2 Q8WYP5 1362 1375 AHCTF1 Protein ELYS yes no 2 7.545E-21 175.33 4 2 0.74149 0.9447 12.784 6 Median 0.82162 1.0253 14.005 4 0 Median 0.54969 0.87595 1.7387 2 0 Median 176120000 106050000 70075000 94841000 54628000 40213000 81282000 51419000 29862000 2103 1670 2156 7715;7716;7717;7718;7719;7720 11644;11645;11646;11647;11648;11649;11650 11645 6 DVFRDPALK RYSVDIPLDKTVVNKDVFRDPALKRKLKKK KTVVNKDVFRDPALKRKLKKKSAYGLSLKN K D V L K R 1 1 0 2 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 1 0 0 9 1 1059.5713 E4W6B6;B2R4D8;A0A024R1V4;P61353;K7ELC7;K7EQQ9;Q6LCU2 E4W6B6 99 107 RPL27 60S ribosomal protein L27 yes no 2 2.4374E-08 144.77 4 2 0.73575 0.98741 13.387 6 Median 0.77036 1.0194 15.679 4 0 Median 0.55367 0.97411 4.2298 2 0 Median 3031800000 1820200000 1211600000 2580400000 1514200000 1066100000 451400000 305940000 145460000 2104 72 2157 7721;7722;7723;7724;7725;7726 11651;11652;11653;11654;11655;11656;11657;11658;11659;11660;11661 11653 11 DVFRDPALKR RYSVDIPLDKTVVNKDVFRDPALKRKLKKK TVVNKDVFRDPALKRKLKKKSAYGLSLKNW K D V K R K 1 2 0 2 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 1 0 0 10 2 1215.6724 E4W6B6;B2R4D8;A0A024R1V4;P61353;K7ELC7;K7EQQ9;Q6LCU2 E4W6B6 99 108 RPL27 60S ribosomal protein L27 yes no 3 0.010655 72.2 2 0.79813 1.0023 1.1537 2 Median 0.79813 1.0023 1.1537 2 0 Median NaN NaN NaN 0 0 Median 25128000 13755000 11373000 25128000 13755000 11373000 0 0 0 2105 72 2158 7727;7728 11662;11663 11663 2 DVGNLLR NTSVYHISGKKKTFKDVGNLLRSHGIDLDH SGKKKTFKDVGNLLRSHGIDLDHNRFLILQ K D V L R S 0 1 1 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 785.43955 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9J578;C9JVD8 Q9NTJ3 208 214 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.027093 91.584 4 2 0.66868 1.1097 9.4895 6 Plateau 0.73121 1.0071 12.137 4 0 Median 0.63605 1.0048 2.865 2 0 Median 237530000 137220000 100310000 169800000 94056000 75740000 67738000 43165000 24573000 2106 1760 2159 7729;7730;7731;7732;7733;7734 11664;11665;11666;11667;11668;11669;11670;11671;11672 11672 9 DVGPYGIR TSETEITTTEIIKRRDVGPYGIRSEYCIRK TEIIKRRDVGPYGIRSEYCIRKIICPIGVP R D V I R S 0 1 0 1 0 0 0 2 0 1 0 0 0 0 1 0 0 0 1 1 0 0 8 0 875.45012 E7ETD6;Q12830;F5GXF5 E7ETD6 1813 1820 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.0082125 78.616 1 0.73632 1.0377 NaN 1 Median 0.73632 1.0377 NaN 1 0 Median NaN NaN NaN 0 0 Median 5404200 3196700 2207500 5404200 3196700 2207500 0 0 0 2107 1015 2160 7735 11673 11673 1 DVGSLASVQR QDLYERLEHGQATAKDVGSLASVQRYLQGT QATAKDVGSLASVQRYLQGTGCIAGLLLPG K D V Q R Y 1 1 0 1 0 1 0 1 0 0 1 0 0 0 0 2 0 0 0 2 0 0 10 0 1030.5407 A0A087X1U6;A0A075B730 A0A087X1U6 595 604 EPPK1 yes no 2 0.0061075 59.153 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2108 373 2161 7736 11674 11674 1 DVHTLLDR DHLERVLEAAAQAARDVHTLLDRVVRQHVR AAAQAARDVHTLLDRVVRQHVRE_______ R D V D R V 0 1 0 2 0 0 0 0 1 0 2 0 0 0 0 0 1 0 0 1 0 0 8 0 967.50869 E9PI41;Q9NPD3 E9PI41 246 253 EXOSC4 Exosome complex component RRP41 yes no 2 0.024227 55.531 2 2 0.4459 0.63938 2.2554 2 Median NaN NaN NaN 0 0 Median 0.4459 0.63938 2.2554 2 0 Median 15829000 10956000 4873100 0 0 0 15829000 10956000 4873100 2109 1033 2162 7737;7738;7739;7740 11675;11676;11677;11678 11678 4 DVIDEPIIEEPSR PEVPREDQQQQHQQRDVIDEPIIEEPSRLQ QRDVIDEPIIEEPSRLQESVMEASRTNIDE R D V S R L 0 1 0 2 0 0 3 0 0 3 0 0 0 0 2 1 0 0 0 1 0 0 13 0 1510.7515 A0A024R9J0;O60216 A0A024R9J0 438 450 RAD21 Double-strand-break repair protein rad21 homolog yes no 2 0.017512 45.077 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4163400 4163400 0 0 0 0 4163400 4163400 0 2110 223 2163 7741 11679 11679 1 DVIEEHGPSEK LPRETLAKNKKEMAKDVIEEHGPSEKAING EMAKDVIEEHGPSEKAINGPTSASGDDISK K D V E K A 0 0 0 1 0 0 3 1 1 1 0 1 0 0 1 1 0 0 0 1 0 0 11 0 1238.5779 A0A0F7KYT8;B4DXZ6;A0A0F7L1S3;P51114;B4DM78;H7C4S4 A0A0F7KYT8 624 634 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 2 0.0006949 111.06 3 2 0.85103 1.1153 13.15 4 Median 0.98089 1.243 0.02693 2 0 Median 0.73666 0.99027 1.5079 2 0 Median 27335000 11237000 16098000 20639000 7380800 13258000 6695700 3856500 2839200 2111 438 2164 7742;7743;7744;7745;7746 11680;11681;11682;11683;11684;11685;11686;11687 11684 8 DVIEEYFK SCVVVKDYGKESQAKDVIEEYFKCKK____ GKESQAKDVIEEYFKCKK____________ K D V F K C 0 0 0 1 0 0 2 0 0 1 0 1 0 1 0 0 0 0 1 1 0 0 8 0 1041.5019 P25398 P25398 122 129 RPS12 40S ribosomal protein S12 yes yes 1;2 0.0073865 117.04 6 2 0.91053 1.175 34.364 7 Median 0.89273 1.1417 7.099 5 0 Median 1.4402 2.2177 3.2682 2 0 Median 166940000 80661000 86280000 116240000 60160000 56084000 50697000 20500000 30196000 2112 1296 2165 7747;7748;7749;7750;7751;7752;7753;7754 11688;11689;11690;11691;11692;11693;11694;11695;11696;11697;11698;11699;11700 11690 13 DVIGFNMAGLDYLK EKLRETTISKVSQVRDVIGFNMAGLDYLKR RDVIGFNMAGLDYLKRECEAKSEVMFFADA R D V L K R 1 0 1 2 0 0 0 2 0 1 2 1 1 1 0 0 0 0 1 1 0 0 14 0 1554.7752 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 893 906 WDR3 WD repeat-containing protein 3 yes no 2 7.0084E-05 107.18 5 0.83731 1.0191 25.154 5 Median 0.83731 1.0191 25.154 5 0 Median NaN NaN NaN 0 0 Median 10790000 5341900 5448600 10790000 5341900 5448600 0 0 0 2113 1576 2166;2167 7755;7756;7757;7758;7759 11701;11702;11703;11704;11705;11706;11707 11703 715 7 DVISAQFENTTTSK KKTCSSCSKDILNPKDVISAQFENTTTSKD KDVISAQFENTTTSKDFCSQSCLSTYELKK K D V S K D 1 0 1 1 0 1 1 0 0 1 0 1 0 1 0 2 3 0 0 1 0 0 14 0 1539.7417 Q5VZL5;H7C1I7 Q5VZL5 401 414 ZMYM4 Zinc finger MYM-type protein 4 yes no 2 1.3342E-09 99.215 3 2 0.82679 1.0674 25.685 4 Median 0.79228 1.0043 13.057 3 0 Median 1.1505 1.5935 NaN 1 0 Median 25515000 11577000 13938000 17899000 9023900 8875300 7615800 2552600 5063200 2114 1580 2168 7760;7761;7762;7763;7764 11708;11709;11710;11711;11712;11713;11714;11715;11716 11712 9 DVLAHQVPNAK VDLILENTSKVPAPKDVLAHQVPNAKKLRR PAPKDVLAHQVPNAKKLRRKEQLWEKLAKQ K D V A K K 2 0 1 1 0 1 0 0 1 0 1 1 0 0 1 0 0 0 0 2 0 0 11 0 1190.6408 Q7L4X7;Q96CS0;Q53YP0;B4E1N4;Q9NZM5;B4DVK1;B4DND9;B4E013;M0QZ34;M0QX73 Q7L4X7 129 139 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes no 2 5.8076E-05 93.649 1 2 0.66377 0.91637 14.958 3 Median 0.92908 1.1801 NaN 1 0 Median 0.63852 0.91091 0.84489 2 0 Median 25178000 13741000 11436000 12904000 6552000 6352400 12273000 7189200 5084100 2115 887 2169 7765;7766;7767 11717;11718;11719 11719 3 DVLDSVL EDLESVGKGAVHDVKDVLDSVL________ KGAVHDVKDVLDSVL_______________ K D V V L - 0 0 0 2 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 2 0 0 7 0 759.40143 P81605 P81605 104 110 DCD Dermcidin;Survival-promoting peptide;DCD-1 yes yes 1 0.046044 56.026 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4816500 0 0 0 0 0 4816500 0 0 2116 1428 2170 7768 11720 11720 1 DVLEYVVFEK DRFGRLMYGQEDVPKDVLEYVVFEKQLTNP EDVPKDVLEYVVFEKQLTNPYGSWRMHTKI K D V E K Q 0 0 0 1 0 0 2 0 0 0 1 1 0 1 0 0 0 0 1 3 0 0 10 0 1239.6387 A0A0G2JMS5;A0A087WU62;A0A087X2D5;B4DEF8;Q9BRJ2 A0A0G2JMS5 191 200 MRPL45 39S ribosomal protein L45, mitochondrial yes no 2 0.0046529 63.816 2 0.37865 0.49665 NaN 1 Median 0.37865 0.49665 NaN 1 0 Median NaN NaN NaN 0 0 Median 6973200 5677000 1296200 6973200 5677000 1296200 0 0 0 2117 340 2171 7769;7770 11721;11722 11721 2 DVLLQVDDER QAACKQVRRTEKKLKDVLLQVDDERRNAEQ EKKLKDVLLQVDDERRNAEQYKDQADKAST K D V E R R 0 1 0 3 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 10 0 1200.5986 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1846 1855 MYH9;FLJ00279 Myosin-9 no no 2 0.0048425 75.294 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3774800 0 3774800 2306900 0 2306900 1467900 0 1467900 2118 61;490 2172 7771;7772 11723;11724 11723 2 DVLLQVDDERR QAACKQVRRTEKKLKDVLLQVDDERRNAEQ KKLKDVLLQVDDERRNAEQYKDQADKASTR K D V R R N 0 2 0 3 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 11 1 1356.6997 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1846 1856 MYH9;FLJ00279 Myosin-9 no no 2 4.8825E-46 201.75 4 0.89564 1.226 6.4011 4 Median 0.89564 1.226 6.4011 4 0 Median NaN NaN NaN 0 0 Median 495550000 254420000 241130000 495550000 254420000 241130000 0 0 0 2119 61;490 2173 7773;7774;7775;7776 11725;11726;11727;11728;11729;11730;11731 11729 7 DVLSVAFSSDNR LTTGTTTRRFVGHTKDVLSVAFSSDNRQIV HTKDVLSVAFSSDNRQIVSGSRDKTIKLWN K D V N R Q 1 1 1 2 0 0 0 0 0 0 1 0 0 1 0 3 0 0 0 2 0 0 12 0 1308.631 E9KL35;P63244;D6R9Z1;D6R9L0;D6RFX4;J3KPE3;H0Y8W2;H0YAF8;B4DVD2;D6RHH4;H0YAM7;D6RFZ9;D6RAU2;E9PD14 E9KL35 107 118 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 1.5254E-10 156.48 5 2 0.82359 1.1248 62.469 6 Median 0.80331 1.0989 5.7999 4 0 Median 2.3648 3.628 0.20127 2 0 Median 266860000 131460000 135390000 222810000 119330000 103470000 44049000 12129000 31920000 2120 1019 2174 7777;7778;7779;7780;7781;7782;7783 11732;11733;11734;11735;11736;11737;11738;11739;11740;11741;11742 11735 11 DVNAAIAAIK YMACCLLYRGDVVPKDVNAAIAAIKTKRSI DVVPKDVNAAIAAIKTKRSIQFVDWCPTGF K D V I K T 4 0 1 1 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 1 0 0 10 0 984.5604 P68366 P68366 327 336 TUBA4A Tubulin alpha-4A chain yes yes 2 0.00061291 105.14 2 2 0.42121 0.53311 NaN 1 Median 0.42121 0.53311 NaN 1 0 Median NaN NaN NaN 0 0 Median 18373000 10290000 8083400 13674000 10290000 3384200 4699200 0 4699200 2121 1422 2175 7784;7785;7786;7787 11743;11744;11745;11746;11747 11744 5 DVNAAIATIK YMACCLLYRGDVVPKDVNAAIATIKTKRSI DVVPKDVNAAIATIKTKRSIQFVDWCPTGF K D V I K T 3 0 1 1 0 0 0 0 0 2 0 1 0 0 0 0 1 0 0 1 0 0 10 0 1014.571 B3KT06;P68363;B3KPS3;A8JZY9;B4DDU2;Q53GA7;F5H5D3;Q9BQE3;Q8N532;Q71U36;B4DQK4;Q1ZYQ1;Q13748;Q9UQM3;Q6PEY2 B3KT06 292 301 TUBA1B;TUBA1C;TUBA1A;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 1;2 2.0513E-12 179.57 6 2 0.40715 0.53168 108.8 8 Median 0.40072 0.52523 7.1356 6 0 Median 3.3408 5.3427 0.32575 2 0 Median 678460000 440680000 237780000 580900000 416690000 164210000 97560000 23987000 73573000 2122 777;1607;1056 2176 7788;7789;7790;7791;7792;7793;7794;7795 11748;11749;11750;11751;11752;11753;11754;11755;11756;11757;11758;11759 11749 12 DVNQQEFVR ______________________________ PGVTVKDVNQQEFVRALAAFLKKSGKLKVP K D V V R A 0 1 1 1 0 2 1 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 9 0 1133.5465 B0ZBD0;Q8WVX7;P39019;M0R2L9;M0QXK4;M0QYF7;M0R140 B0ZBD0 8 16 RPS19 40S ribosomal protein S19 yes no 2 3.3143E-06 170.24 4 2 0.8728 1.1981 4.7883 6 Median 0.88648 1.2278 2.5026 4 0 Median 0.73611 1.1184 2.3622 2 0 Median 637490000 349050000 288440000 602070000 328960000 273120000 35415000 20095000 15320000 2123 669 2177 7796;7797;7798;7799;7800;7801 11760;11761;11762;11763;11764;11765;11766;11767;11768;11769;11770;11771;11772;11773 11761 14 DVNVNFEK RRDYVFIEFCVEDSKDVNVNFEKSKLTFSC FCVEDSKDVNVNFEKSKLTFSCLGGSDNFK K D V E K S 0 0 2 1 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 2 0 0 8 0 963.46616 A0A024RB32;A0A087WYT3;B3KUY2;Q15185;B4DDC6 A0A024RB32 26 33 PTGES3 Prostaglandin E synthase 3 yes no 1;2 4.3929E-05 136.57 4 0.37284 0.46241 15.298 3 Plateau 0.37284 0.46241 15.298 3 0 Plateau NaN NaN NaN 0 0 Median 107700000 78471000 29226000 107700000 78471000 29226000 0 0 0 2124 259 2178 7802;7803;7804;7805 11774;11775;11776;11777;11778 11775 5 DVPAYSQDTFK NPTRSEDLLDYGPFRDVPAYSQDTFKVHYE GPFRDVPAYSQDTFKVHYENNSPFLTITSM R D V F K V 1 0 0 2 0 1 0 0 0 0 0 1 0 1 1 1 1 0 1 1 0 0 11 0 1269.5877 Q96HX3;Q6IBR0;Q53EP4;P04843;B7Z4L4;B4DL99 Q96HX3 166 176 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 0.014727 66.92 2 0.51719 0.68092 NaN 1 Median 0.51719 0.68092 NaN 1 0 Median NaN NaN NaN 0 0 Median 5588000 4829200 758760 5588000 4829200 758760 0 0 0 2125 1233 2179 7806;7807 11779;11780 11780 2 DVPESFTSEAYQWLNR GISREKVQWGVFVPRDVPESFTSEAYQWLN VPESFTSEAYQWLNRSQFYFLTKSQSLLTF R D V N R S 1 1 1 1 0 1 2 0 0 0 1 0 0 1 1 2 1 1 1 1 0 0 16 0 1940.8905 A8K330;Q8IWA0 A8K330 638 653 WDR75 WD repeat-containing protein 75 yes no 2 0.028558 43.991 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7843400 7843400 0 0 0 0 7843400 7843400 0 2126 588 2180 7808 11781 11781 1 DVPLTAEEVEFVVEK ______________________________ DVPLTAEEVEFVVEKALSMFSKMNLQEIPP K D V E K A 1 0 0 1 0 0 4 0 0 0 1 1 0 1 1 0 1 0 0 4 0 0 15 0 1702.8665 H3BP78;F8W7R3;B3KNW8;B7ZMF2;Q9NVI1;H3BN35;H3BT54;H3BMG4 H3BP78 10 24 FANCI Fanconi anemia group I protein yes no 2 5.3289E-05 120.53 1 0.32509 0.40915 NaN 1 Median 0.32509 0.40915 NaN 1 0 Median NaN NaN NaN 0 0 Median 1594100 1174500 419590 1594100 1174500 419590 0 0 0 2127 761 2181 7809 11782 11782 1 DVPVVAILGSGGGFR KLLGPKNSEGLHSARDVPVVAILGSGGGFR DVPVVAILGSGGGFRAMVGFSGVMKALYES R D V F R A 1 1 0 1 0 0 0 4 0 1 1 0 0 1 1 1 0 0 0 3 0 0 15 0 1442.7882 A8K2S1;P47712 A8K2S1 186 200 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase yes no 2 1.3046E-05 111.52 3 0.3958 0.55329 5.9253 3 Median 0.3958 0.55329 5.9253 3 0 Median NaN NaN NaN 0 0 Median 10673000 7146900 3526000 10673000 7146900 3526000 0 0 0 2128 584 2182 7810;7811;7812 11783;11784;11785;11786;11787 11783 5 DVQDELR RSQAASILTKFQELKDVQDELRIKENELRA LTKFQELKDVQDELRIKENELRALEEELAG K D V L R I 0 1 0 2 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 7 0 873.41921 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;B3KM27 A0A024R158 683 689 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.020089 76.847 1 1 0.62486 0.87692 3.4411 2 Median 0.63761 0.85584 NaN 1 0 Median 0.61237 0.89852 NaN 1 0 Median 27773000 17257000 10516000 14279000 8814400 5464200 13495000 8442700 5052100 2129 50 2183 7813;7814 11788;11789;11790;11791 11791 4 DVQDSLTVSNEAQTAK VHYYEDGNVQLVSHKDVQDSLTVSNEAQTA VQDSLTVSNEAQTAKEFIKIIENAENEYQT K D V A K E 2 0 1 2 0 2 1 0 0 0 1 1 0 0 0 2 2 0 0 2 0 0 16 0 1704.8166 A8K0T9;A0A024R0E5;P52907 A8K0T9 211 226 CAPZA1 F-actin-capping protein subunit alpha-1 yes no 2 3.8037E-113 279.75 4 0.74823 0.95381 11.351 4 Median 0.74823 0.95381 11.351 4 0 Median NaN NaN NaN 0 0 Median 50698000 29082000 21616000 50698000 29082000 21616000 0 0 0 2130 32 2184 7815;7816;7817;7818 11792;11793;11794;11795;11796;11797;11798;11799;11800;11801 11796 10 DVQEIATVVVPK RLKSILKLDGDVLMKDVQEIATVVVPKPKH LMKDVQEIATVVVPKPKHCQEKMQCEVKDE K D V P K P 1 0 0 1 0 1 1 0 0 1 0 1 0 0 1 0 1 0 0 4 0 0 12 0 1296.7289 A0A024RB76;Q9BRT6 A0A024RB76 43 54 C12orf31;LLPH Protein LLP homolog yes no 2 4.9637E-05 107.11 4 2 0.69704 0.87943 21.809 6 Median 0.70357 0.88277 0.75122 4 0 Median 0.36919 0.58012 3.1824 2 0 Median 187810000 119550000 68265000 126030000 73943000 52090000 61780000 45605000 16175000 2131 263 2185 7819;7820;7821;7822;7823;7824 11802;11803;11804;11805;11806;11807;11808;11809;11810;11811;11812 11805 11 DVQEIFR LDECDKMLEQLDMRRDVQEIFRLTPHEKQC LEQLDMRRDVQEIFRLTPHEKQCMMFSATL R D V F R L 0 1 0 1 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 7 0 905.46068 A0A024RCM3;Q13838;Q5STU3;F6WLT2;A0A0G2JJZ9;F6S4E6;A0A0A0MT12;F6TRA5;Q59G92;A0A140T9X3;B4DP52;A0A140T996;A0A140T9L4;A0A140T973;A0A140T9K1;A0A140T9X9;B4DIJ6;F6UJC5;A0A140TA18;B4DIZ8;O00148;B4DX78;K7EQN7;A0A024R7H0 O00148 209 215 hCG_2005638;DDX39B;DDX39A;DDX39 Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A no no 2 0.00314 97.071 2 1 2.3544 3.1217 NaN 1 Median NaN NaN NaN 0 0 Median 2.3544 3.1217 NaN 1 0 Median 14162000 11026000 3136500 9571400 9571400 0 4591000 1454500 3136500 2132 1164;296 2186 7825;7826;7827 11813;11814;11815 11814 3 DVQIGDIVTVGECR KRHKNMSVHLSPCFRDVQIGDIVTVGECRP RDVQIGDIVTVGECRPLSKTVRFNVLKVTK R D V C R P 0 1 0 2 1 1 1 2 0 2 0 0 0 0 0 0 1 0 0 3 0 0 14 0 1559.7614 P62280;M0R1H5 P62280 119 132 RPS11 40S ribosomal protein S11 yes no 2 0.00026031 78.692 1 0.63633 0.8981 NaN 1 Median 0.63633 0.8981 NaN 1 0 Median NaN NaN NaN 0 0 Median 5857700 3242700 2615000 5857700 3242700 2615000 0 0 0 2133 1404 2187 7828 11816 11816 1 DVQIGDIVTVGECRPLSK KRHKNMSVHLSPCFRDVQIGDIVTVGECRP IGDIVTVGECRPLSKTVRFNVLKVTKAAGT R D V S K T 0 1 0 2 1 1 1 2 0 2 1 1 0 0 1 1 1 0 0 3 0 0 18 1 1985.0252 P62280;M0R1H5 P62280 119 136 RPS11 40S ribosomal protein S11 yes no 2;3 8.443E-90 247.38 8 3 0.76697 1.0166 30.382 11 Median 0.77198 1.0215 3.6624 8 0 Median 0.30152 0.5367 1.5139 3 0 Median 1834400000 1085900000 748510000 1491800000 835530000 656280000 342600000 250360000 92236000 2134 1404 2188 7829;7830;7831;7832;7833;7834;7835;7836;7837;7838;7839 11817;11818;11819;11820;11821;11822;11823;11824;11825;11826;11827;11828;11829;11830;11831;11832;11833;11834;11835;11836 11827 20 DVQSPGFLNEPLSSK DNMELSKSATCKNIKDVQSPGFLNEPLSSK DVQSPGFLNEPLSSKSQRRKSLKLKNDKTI K D V S K S 0 0 1 1 0 1 1 1 0 0 2 1 0 1 2 3 0 0 0 1 0 0 15 0 1616.8046 Q8NG31;H0YCZ2;E9PPJ1 Q8NG31 1073 1087 CASC5 Protein CASC5 yes no 2 0.00012257 91.62 5 2 0.48952 0.71121 13.715 5 Median 0.51478 0.65306 18.811 3 0 Median 0.48591 0.72445 2.6079 2 0 Median 31645000 21587000 10059000 14471000 9795000 4676300 17174000 11792000 5382400 2135 1656 2189 7840;7841;7842;7843;7844;7845;7846 11837;11838;11839;11840;11841;11842;11843;11844;11845 11840 9 DVQTALALAK GNNCVFAPADVTSEKDVQTALALAKGKFGR VTSEKDVQTALALAKGKFGRVDVAVNCAGI K D V A K G 3 0 0 1 0 1 0 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1028.5866 A0A0S2Z410;Q99714;Q5H928;A0A0S2Z434 A0A0S2Z410 70 79 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2 0.00026931 103.56 3 0.28144 0.35708 NaN 1 Median 0.28144 0.35708 NaN 1 0 Median NaN NaN NaN 0 0 Median 19516000 18203000 1313100 19516000 18203000 1313100 0 0 0 2136 458 2190 7847;7848;7849 11846;11847;11848;11849 11847 4 DVTEAEQAEEQAR HALTGASDSRVILWKDVTEAEQAEEQARQE WKDVTEAEQAEEQARQEEQVVRQQELDNLL K D V A R Q 3 1 0 1 0 2 4 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 13 0 1474.6536 Q12788;J3KNP2;A0JLS5 Q12788 634 646 TBL3 Transducin beta-like protein 3 yes no 2 7.7539E-30 208.84 5 2 0.81738 1.2579 10.817 3 Median 0.77368 1.0748 NaN 1 0 Median 0.83817 1.2897 3.5336 2 0 Median 49753000 29256000 20497000 8050500 5681500 2368900 41703000 23574000 18129000 2137 1456 2191 7850;7851;7852;7853;7854;7855;7856 11850;11851;11852;11853;11854;11855;11856;11857;11858 11858 9 DVTEAEQAEEQARQEEQVVR HALTGASDSRVILWKDVTEAEQAEEQARQE EQAEEQARQEEQVVRQQELDNLLHEKRYLR K D V V R Q 3 2 0 1 0 4 6 0 0 0 0 0 0 0 0 0 1 0 0 3 0 0 20 1 2343.0939 Q12788;J3KNP2;A0JLS5 Q12788 634 653 TBL3 Transducin beta-like protein 3 yes no 2;3 1.0721E-46 126.84 6 2 0.75887 1.1183 14.866 8 Median 0.83913 1.1461 17.45 6 0 Median 0.69974 1.0964 4.4296 2 0 Median 323280000 179770000 143510000 228600000 123450000 105150000 94681000 56323000 38358000 2138 1456 2192 7857;7858;7859;7860;7861;7862;7863;7864 11859;11860;11861;11862;11863;11864;11865;11866;11867;11868;11869;11870;11871;11872;11873;11874;11875;11876 11871 18 DVTGAEALLER INGIRGLVSSDELAKDVTGAEALLERHQEH ELAKDVTGAEALLERHQEHRTEIDARAGTF K D V E R H 2 1 0 1 0 0 2 1 0 0 2 0 0 0 0 0 1 0 0 1 0 0 11 0 1172.6037 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16 Q13813 1370 1380 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.00082386 100.48 3 1 0.71581 0.95221 2.6878 3 Median 0.71581 0.95221 2.6878 3 0 Median NaN NaN NaN 0 0 Median 75945000 42062000 33882000 73116000 42062000 31053000 2828800 0 2828800 2139 1476 2193 7865;7866;7867;7868 11877;11878;11879;11880;11881;11882 11879 5 DVTVLSVAEEQDLLK ELIDQDDCISHSEPKDVTVLSVAEEQDLLK DVTVLSVAEEQDLLKQERLVTVDEIGEVEE K D V L K Q 1 0 0 2 0 1 2 0 0 0 3 1 0 0 0 1 1 0 0 3 0 0 15 0 1657.8774 Q14966;A0A096LPK8;Q57Z90 Q14966 1662 1676 ZNF638;NP220 Zinc finger protein 638 yes no 2 8.8005E-06 112.5 3 1.2897 1.6709 30.368 3 Median 1.2897 1.6709 30.368 3 0 Median NaN NaN NaN 0 0 Median 13424000 5796700 7627200 13424000 5796700 7627200 0 0 0 2140 1498 2194 7869;7870;7871 11883;11884;11885 11883 2 DVVMEPTMK EVQEKAIEEQMVAAKDVVMEPTMKTLSDDL QMVAAKDVVMEPTMKTLSDDLDEAAKEFQE K D V M K T 0 0 0 1 0 0 1 0 0 0 0 1 2 0 1 0 1 0 0 2 0 0 9 0 1048.4933 Q9H0A0;A0A087WV29 Q9H0A0 923 931 NAT10 N-acetyltransferase 10 yes no 2 0.025378 41.448 1 0.57328 0.78617 NaN 1 Median NaN NaN NaN 0 0 Median 0.57328 0.78617 NaN 1 0 Median 3593800 2374200 1219600 0 0 0 3593800 2374200 1219600 2141 1730 2195 7872 11886 11886 1 DVVQAYPEVR HERDINTDFLLVVLRDVVQAYPEVRIVLMS LVVLRDVVQAYPEVRIVLMSATIDTSMFCE R D V V R I 1 1 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 1 3 0 0 10 0 1174.5982 Q08211;Q58F26;Q6PJK6 Q08211 529 538 DHX9 ATP-dependent RNA helicase A yes no 2 4.7833E-05 104.05 4 1.1648 1.5867 37.284 3 Median 1.1648 1.5867 37.284 3 0 Median NaN NaN NaN 0 0 Median 211470000 97439000 114040000 211470000 97439000 114040000 0 0 0 2142 1448 2196 7873;7874;7875;7876 11887;11888;11889;11890;11891;11892 11890 6 DVVSSLRR GPTLTFQVKKYSLVRDVVSSLRRHRMHEQQ KKYSLVRDVVSSLRRHRMHEQQFAHPPLLV R D V R R H 0 2 0 1 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 2 0 0 8 1 930.52468 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;C9J3W3;C9JHF7 A0A0A6YYI3 120 127 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 0.0049636 102.71 2 1 0.73755 0.99033 15.815 3 Plateau 0.71552 0.97637 2.0068 2 0 Median 0.51128 0.74325 NaN 1 0 Median 64220000 35869000 28351000 54286000 29918000 24368000 9934600 5951600 3983000 2143 408 2197 7877;7878;7879 11893;11894;11895 11894 3 DVVVQHVHFDGLGR VEVEPEAKQEILENKDVVVQHVHFDGLGRT KDVVVQHVHFDGLGRTKDDIIICEIGDVFK K D V G R T 0 1 0 2 0 1 0 2 2 0 1 0 0 1 0 0 0 0 0 4 0 0 14 0 1576.811 Q9Y512 Q9Y512 44 57 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 3 0.0012564 79.81 1 2 1.4156 1.801 73 3 Median 0.43472 0.57949 NaN 1 0 Median 1.5566 2.0199 16.227 2 0 Median 17395000 8805200 8590000 9031000 6131700 2899300 8364200 2673500 5690700 2144 1827 2198 7880;7881;7882 11896;11897;11898;11899 11896 4 DVYAVLQLEAEEK DVILKFRDKIEKMEKDVYAVLQLEAEEKEM EKDVYAVLQLEAEEKEMQQSEAQINTAKRL K D V E K E 2 0 0 1 0 1 3 0 0 0 2 1 0 0 0 0 0 0 1 2 0 0 13 0 1505.7613 B7Z6D5;B3GQE6;Q96GQ7;Q53G15 B7Z6D5 578 590 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 2.0483E-25 196.11 4 2 0.87841 1.1064 14.581 6 Median 0.89602 1.1397 3.5802 4 0 Median 0.56947 0.86236 3.4809 2 0 Median 144840000 80181000 64656000 106820000 54842000 51977000 38019000 25339000 12680000 2145 750 2199 7883;7884;7885;7886;7887;7888 11900;11901;11902;11903;11904;11905;11906;11907;11908;11909;11910;11911;11912 11901 13 DVYVQLYLQHLTAR LVANNVTLPAGEQRKDVYVQLYLQHLTARN KDVYVQLYLQHLTARNRPPLPAGTNSKGPP K D V A R N 1 1 0 1 0 2 0 0 1 0 3 0 0 0 0 0 1 0 2 2 0 0 14 0 1717.9152 A0A024RBE7;P42167;G5E972;A0A024RBH7;Q59G12;P42166 P42166 35 48 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin no no 2;3 7.87E-18 136.99 7 1 0.49406 0.67408 22.228 8 Median 0.47522 0.65323 16.956 7 0 Median 0.57263 0.94987 NaN 1 0 Median 228000000 150930000 77071000 111980000 78067000 33916000 116010000 72859000 43155000 2146 1335;270 2200 7889;7890;7891;7892;7893;7894;7895;7896 11913;11914;11915;11916;11917;11918;11919;11920;11921;11922;11923;11924 11918 12 DWNIPFK CHFMPPEKVHKELFKDWNIPFKQPSYPSVK KVHKELFKDWNIPFKQPSYPSVKRYNRNRT K D W F K Q 0 0 1 1 0 0 0 0 0 1 0 1 0 1 1 0 0 1 0 0 0 0 7 0 918.45995 Q9BYG3;C9J808;B4DSM4;C9J6C5 Q9BYG3 133 139 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2 0.038862 55.441 1 0.6847 0.98825 NaN 1 Median NaN NaN NaN 0 0 Median 0.6847 0.98825 NaN 1 0 Median 5069800 3129200 1940600 0 0 0 5069800 3129200 1940600 2147 1726 2201 7897 11925 11925 1 DYAFVHFEDR SFSEFGKLERVKKLKDYAFVHFEDRGAAVK VKKLKDYAFVHFEDRGAAVKAMDEMNGKEI K D Y D R G 1 1 0 2 0 0 1 0 1 0 0 0 0 2 0 0 0 0 1 1 0 0 10 0 1297.5728 Q0VGD6;Q6MZS5;B2R7W4;O43390;B4DT28;B4DMB1;B4DMD1 Q0VGD6 349 358 HNRPR;DKFZp686A13234;HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 2 0.00021913 91.867 2 2 0.97538 1.3555 58.299 4 Median 0.61046 0.82339 1.4506 2 0 Median 1.5611 2.2588 3.1828 2 0 Median 32150000 16946000 15204000 18749000 11755000 6994000 13401000 5190900 8209600 2148 711 2202 7898;7899;7900;7901 11926;11927;11928;11929;11930 11928 5 DYALHWLVLGTHTSDEQNHLVVAR LTVQWLPEVTKPEGKDYALHWLVLGTHTSD GTHTSDEQNHLVVARVHIPNDDAQFDASHC K D Y A R V 2 1 1 2 0 1 1 1 3 0 4 0 0 0 0 1 2 1 1 3 0 0 24 0 2773.3936 Q6FHQ0;Q16576;E9PC52;A8K6A2;C9J7L0 Q6FHQ0 59 82 RBBP7 Histone-binding protein RBBP7 yes no 4 7.3995E-68 151.82 2 0.91584 1.4098 16.259 2 Median NaN NaN NaN 0 0 Median 0.91584 1.4098 16.259 2 0 Median 41482000 21059000 20423000 0 0 0 41482000 21059000 20423000 2149 1521 2203 7902;7903 11931;11932;11933 11931 3 DYAPPPRDYTYR DSYSSRDYPSSRDTRDYAPPPRDYTYRDYG DTRDYAPPPRDYTYRDYGHSSSRDDYPSRG R D Y Y R D 1 2 0 2 0 0 0 0 0 0 0 0 0 0 3 0 1 0 3 0 0 0 12 1 1512.6997 H0Y6E7;H3BT71;P38159;B4E352;B3KRG5;H3BUY5;Q2VIN3;Q96E39 H0Y6E7 235 246 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 2 0.0038695 66.435 2 0.97074 1.3085 9.4961 2 Median 0.97074 1.3085 9.4961 2 0 Median NaN NaN NaN 0 0 Median 19910000 10475000 9434800 19910000 10475000 9434800 0 0 0 2150 1091;1531 2204 7904;7905 11934;11935 11935 2 DYDSFVLPLLEDK LVIGSYSQPSDSWDKDYDSFVLPLLEDKQP DKDYDSFVLPLLEDKQPCYILFRLDSQNAQ K D Y D K Q 0 0 0 3 0 0 1 0 0 0 3 1 0 1 1 1 0 0 1 1 0 0 13 0 1552.7661 F8VS81;Q12792;F8W1Q9 F8VS81 90 102 TWF1 Twinfilin-1 yes no 2 0.0066562 106.62 2 1.313 1.6549 NaN 1 Median 1.313 1.6549 NaN 1 0 Median NaN NaN NaN 0 0 Median 3411600 1313600 2097900 3411600 1313600 2097900 0 0 0 2151 1061 2205 7906;7907 11936;11937;11938 11936 3 DYDWINAER REAEDGAAKVSKMLKDYDWINAERHLFGQP VSKMLKDYDWINAERHLFGQPNSAYDFKTN K D Y E R H 1 1 1 2 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 9 0 1180.5149 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;A0A0C4DGE5 A0A024R158 937 945 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.02739 47.187 2 0.53206 0.7636 2.9783 2 Median NaN NaN NaN 0 0 Median 0.53206 0.7636 2.9783 2 0 Median 17070000 9148400 7921500 0 0 0 17070000 9148400 7921500 2152 50 2206 7908;7909 11939;11940 11940 2 DYEAGQLYGLEK FRLDIFKDFQEETVKDYEAGQLYGLEKFWA TVKDYEAGQLYGLEKFWAFLKYSKAKNLDI K D Y E K F 1 0 0 1 0 1 2 2 0 0 2 1 0 0 0 0 0 0 2 0 0 0 12 0 1384.6511 Q6PKG0 Q6PKG0 981 992 LARP1 La-related protein 1 yes yes 2 0.0011881 76.228 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2739700 2739700 0 2739700 2739700 0 0 0 0 2153 1597 2207 7910 11941 11941 1 DYEEIGPSICR LASTPEFYQVCHTKKDYEEIGPSICRHNPV HTKKDYEEIGPSICRHNPVFGVMS______ K D Y C R H 0 1 0 1 1 0 2 1 0 2 0 0 0 0 1 1 0 0 1 0 0 0 11 0 1337.5922 A0A024RAI1;P61158;B4DXW1;Q59FV6;B4DT29;B4DTI0;B4E1U3 A0A024RAI1 399 409 ACTR3 Actin-related protein 3 yes no 2 0.0020625 88.495 3 1.3023 1.7799 6.5033 2 Median 1.3023 1.7799 6.5033 2 0 Median NaN NaN NaN 0 0 Median 12198000 4949600 7248700 12198000 4949600 7248700 0 0 0 2154 243 2208 7911;7912;7913 11942;11943;11944;11945 11944 4 DYEEVGVDSVEGEGEEEGEEY GEFSEAREDMAALEKDYEEVGVDSVEGEGE VDSVEGEGEEEGEEY_______________ K D Y E Y - 0 0 0 2 0 0 9 4 0 0 0 0 0 0 0 1 0 0 2 3 0 0 21 0 2347.8976 B3KT06;P68363;A8JZY9;B4DN58;Q71U36;B4DQK4;Q9UQM3 B3KT06 396 416 TUBA1B;TUBA1A Tubulin alpha-1B chain;Tubulin alpha-1A chain no no 2 0.00071283 82.362 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1027200 0 0 1027200 0 0 0 0 0 2155 777;1607 2209 7914 11946 11946 1 DYELQLVTYK EECQRFAKQYINAIKDYELQLVTYKAQLEP INAIKDYELQLVTYKAQLEPVASPAKKPKV K D Y Y K A 0 0 0 1 0 1 1 0 0 0 2 1 0 0 0 0 1 0 2 1 0 0 10 0 1270.6445 Q15149 Q15149 1418 1427 PLEC Plectin yes yes 2 0.004482 91.867 3 0.94202 1.1958 18.438 3 Median 0.94202 1.1958 18.438 3 0 Median NaN NaN NaN 0 0 Median 22875000 12313000 10562000 22875000 12313000 10562000 0 0 0 2156 1507 2210 7915;7916;7917 11947;11948;11949;11950 11950 4 DYEVELLR KEKDAYHKKCDQKKKDYEVELLRFLESLPE KCDQKKKDYEVELLRFLESLPEEEQQRVLG K D Y L R F 0 1 0 1 0 0 2 0 0 0 2 0 0 0 0 0 0 0 1 1 0 0 8 0 1035.5237 E9PKP7;P17480;A8K962;B4DNQ1;O00164;B4DLB0 E9PKP7 316 323 UBTF Nucleolar transcription factor 1 yes no 2 0.00018737 147.69 4 2 0.88652 1.2127 7.8369 5 Median 0.88795 1.2234 8.7565 4 0 Median 0.74762 1.1266 NaN 1 0 Median 250340000 136370000 113970000 231270000 125040000 106230000 19070000 11330000 7740500 2157 1039 2211 7918;7919;7920;7921;7922;7923 11951;11952;11953;11954;11955;11956;11957;11958;11959;11960;11961 11954 11 DYEVSDSAPHLEGLAEFQENVR PESPFMFSLHLNEARDYEVSDSAPHLEGLA APHLEGLAEFQENVRKTNNFSAFLANVRKA R D Y V R K 2 1 1 2 0 1 4 1 1 0 2 0 0 1 1 2 0 0 1 2 0 0 22 0 2504.1456 Q9HBM1 Q9HBM1 181 202 SPC25 Kinetochore protein Spc25 yes yes 3 2.1438E-17 106.39 4 0.50529 0.67698 15.279 4 Median 0.50529 0.67698 15.279 4 0 Median NaN NaN NaN 0 0 Median 32425000 23041000 9384500 32425000 23041000 9384500 0 0 0 2158 1749 2212 7924;7925;7926;7927 11962;11963;11964;11965;11966;11967;11968 11968 7 DYEVSDSAPHLEGLAEFQENVRK PESPFMFSLHLNEARDYEVSDSAPHLEGLA PHLEGLAEFQENVRKTNNFSAFLANVRKAF R D Y R K T 2 1 1 2 0 1 4 1 1 0 2 1 0 1 1 2 0 0 1 2 0 0 23 1 2632.2405 Q9HBM1 Q9HBM1 181 203 SPC25 Kinetochore protein Spc25 yes yes 3 8.7151E-05 40.756 3 2 0.55907 0.78137 20.002 4 Median 0.55907 0.71385 13.202 2 0 Median 0.58784 0.90616 21.376 2 0 Median 38111000 23374000 14736000 17973000 12015000 5958600 20137000 11359000 8777900 2159 1749 2213 7928;7929;7930;7931;7932 11969;11970;11971;11972;11973;11974;11975;11976;11977;11978;11979;11980 11971 12 DYFEQYGK FVGGIKEDTEEHHLRDYFEQYGKIEVIEIM TEEHHLRDYFEQYGKIEVIEIMTDRGSGKK R D Y G K I 0 0 0 1 0 1 1 1 0 0 0 1 0 1 0 0 0 0 2 0 0 0 8 0 1048.4502 F8W6I7;A0A024RB53;A0A024RAZ7;P09651;Q0VAC0;A0A024RC46;F8VTQ5;F8VZ49;Q9BSM5;A0A024QZ98;Q32P51;F8VYN5 F8W6I7 123 130 HNRNPA1;HNRPA1;hCG_2020860;RP11-78J21.1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2 0.030272 51.43 1 2 1.8319 2.5819 3.1435 2 Median NaN NaN NaN 0 0 Median 1.8319 2.5819 3.1435 2 0 Median 15137000 8331300 6805400 4819400 4819400 0 10317000 3511900 6805400 2160 253 2214 7933;7934;7935 11981;11982;11983 11983 3 DYGHSSSRDDYPSR DTRDYAPPPRDYTYRDYGHSSSRDDYPSRG RDYGHSSSRDDYPSRGYSDRDGYGRDRDYS R D Y S R G 0 2 0 3 0 0 0 1 1 0 0 0 0 0 1 4 0 0 2 0 0 0 14 1 1640.6815 H0Y6E7;H3BT71;P38159;B4E352;B3KRG5;H3BUY5;Q2VIN3;Q96E39 H0Y6E7 247 260 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 3 0.00016846 59.864 1 0.9318 1.243 NaN 1 Median 0.9318 1.243 NaN 1 0 Median NaN NaN NaN 0 0 Median 19410000 10642000 8768300 19410000 10642000 8768300 0 0 0 2161 1091;1531 2215 7936 11984;11985 11984 2 DYGNSPLHR VQLPREGQEDQGLTKDYGNSPLHRFKKPGS DQGLTKDYGNSPLHRFKKPGSKNFQNIFPP K D Y H R F 0 1 1 1 0 0 0 1 1 0 1 0 0 0 1 1 0 0 1 0 0 0 9 0 1057.4941 A6NLN1;A0A0U1RRM4;P26599;A0A0D9SF20;A0A087WUW5;K7ELW5 A6NLN1 425 433 PTBP1 Polypyrimidine tract-binding protein 1 yes no 2 0.0031617 79.906 1 0.3468 0.4801 NaN 1 Median 0.3468 0.4801 NaN 1 0 Median NaN NaN NaN 0 0 Median 11262000 8608000 2654200 11262000 8608000 2654200 0 0 0 2162 489 2216 7937 11986 11986 1 DYGVFIQFPSGLSGLAPK IHPGMLLIGFVKSIKDYGVFIQFPSGLSGL VFIQFPSGLSGLAPKAIMSDKFVTSTSDHF K D Y P K A 1 0 0 1 0 1 0 3 0 1 2 1 0 2 2 2 0 0 1 1 0 0 18 0 1894.9829 Q14690;B4DH82;B4DES7 Q14690 741 758 PDCD11 Protein RRP5 homolog yes no 2 3.1679E-51 204.18 3 1.0063 1.2586 1.5377 3 Median 1.0063 1.2586 1.5377 3 0 Median NaN NaN NaN 0 0 Median 79009000 39329000 39680000 79009000 39329000 39680000 0 0 0 2163 1494 2217 7938;7939;7940 11987;11988;11989;11990;11991;11992;11993 11990 7 DYGVLLEGSGLALR MNIALLSDLTKQISRDYGVLLEGSGLALRG RDYGVLLEGSGLALRGLFIIDPNGVIKHLS R D Y L R G 1 1 0 1 0 0 1 3 0 0 4 0 0 0 0 1 0 0 1 1 0 0 14 0 1461.7827 Q53HC2;P30048 Q53HC2 171 184 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes no 2 0.00035615 91.855 3 0.83762 1.1231 5.6496 3 Plateau 0.83762 1.1231 5.6496 3 0 Plateau NaN NaN NaN 0 0 Median 15271000 8269100 7001600 15271000 8269100 7001600 0 0 0 2164 1306 2218 7941;7942;7943 11994;11995;11996;11997;11998;11999 11997 6 DYLDFLDDEEDQGIYQSK GTVVLDDVELREAQRDYLDFLDDEEDQGIY DFLDDEEDQGIYQSKVRELISDNQYRLIVN R D Y S K V 0 0 0 5 0 2 2 1 0 1 2 1 0 1 0 1 0 0 2 0 0 0 18 0 2191.9433 Q8NHX6;Q53HJ4;B2R7C5;A0A0S2Z4T1;A0A0S2Z492;P25205 Q8NHX6 18 35 HCC5;MCM3 DNA helicase;DNA replication licensing factor MCM3 yes no 2 0.00022604 118.73 1 0.26183 0.34367 NaN 1 Median 0.26183 0.34367 NaN 1 0 Median NaN NaN NaN 0 0 Median 2482600 2058200 424400 2482600 2058200 424400 0 0 0 2165 463 2219 7944 12000 12000 1 DYLHLPPEIVPATLR HFYWYLTNEGIQYLRDYLHLPPEIVPATLR DYLHLPPEIVPATLRRSRPETGRPRPKGLE R D Y L R R 1 1 0 1 0 0 1 0 1 1 3 0 0 0 3 0 1 0 1 1 0 0 15 0 1732.9512 P46783;F6U211;S4R435 P46783 81 95 RPS10;RPS10-NUDT3 40S ribosomal protein S10 yes no 3 0.0010759 78.932 3 1 0.79228 1.0766 39.513 4 Median 0.76779 1.055 3.781 3 0 Median 1.5064 2.3239 NaN 1 0 Median 56235000 30217000 26018000 36755000 20172000 16584000 19480000 10045000 9434700 2166 1347 2220 7945;7946;7947;7948 12001;12002;12003;12004;12005;12006 12001 6 DYLHLPPEIVPATLRR HFYWYLTNEGIQYLRDYLHLPPEIVPATLR YLHLPPEIVPATLRRSRPETGRPRPKGLEG R D Y R R S 1 2 0 1 0 0 1 0 1 1 3 0 0 0 3 0 1 0 1 1 0 0 16 1 1889.0523 P46783;F6U211;S4R435 P46783 81 96 RPS10;RPS10-NUDT3 40S ribosomal protein S10 yes no 3 0.012363 72.615 2 0.86959 1.1824 NaN 1 Median 0.86959 1.1824 NaN 1 0 Median NaN NaN NaN 0 0 Median 2900200 1482200 1418000 2900200 1482200 1418000 0 0 0 2167 1347 2221 7949;7950 12007;12008 12007 2 DYLHYIR VVTKMKMQRTIVIRRDYLHYIRKYNRFEKR QRTIVIRRDYLHYIRKYNRFEKRHKNMSVH R D Y I R K 0 1 0 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 2 0 0 0 7 0 978.49232 P62280;M0QZC5;M0R1H5 P62280 91 97 RPS11 40S ribosomal protein S11 yes no 2 0.0031259 143.37 4 2 0.69159 0.9402 29.429 5 Median 0.7469 1.0264 5.6243 3 0 Median 0.35965 0.58962 4.4471 2 0 Median 1939500000 1144000000 795430000 1696700000 967900000 728760000 242810000 176140000 66670000 2168 1404 2222 7951;7952;7953;7954;7955;7956 12009;12010;12011;12012;12013;12014;12015;12016;12017 12014 9 DYLHYIRK VVTKMKMQRTIVIRRDYLHYIRKYNRFEKR RTIVIRRDYLHYIRKYNRFEKRHKNMSVHL R D Y R K Y 0 1 0 1 0 0 0 0 1 1 1 1 0 0 0 0 0 0 2 0 0 0 8 1 1106.5873 P62280;M0QZC5;M0R1H5 P62280 91 98 RPS11 40S ribosomal protein S11 yes no 2 0.025858 38.238 1 1.116 1.4404 NaN 1 Median 1.116 1.4404 NaN 1 0 Median NaN NaN NaN 0 0 Median 8342400 3400000 4942400 8342400 3400000 4942400 0 0 0 2169 1404 2223 7957 12018 12018 1 DYLLCDYNR VDQPLKIARDKVVGKDYLLCDYNRDGDSYR DKVVGKDYLLCDYNRDGDSYRSPWSNKYDP K D Y N R D 0 1 1 2 1 0 0 0 0 0 2 0 0 0 0 0 0 0 2 0 0 0 9 0 1230.5339 B1AK87;B2R7T8;B1AK88;B4DWA6;P47756;B1AK85 B1AK87 46 54 CAPZB F-actin-capping protein subunit beta yes no 2 0.0052943 72.547 2 0.56566 0.76838 42.448 2 Median 0.56566 0.76838 42.448 2 0 Median NaN NaN NaN 0 0 Median 11078000 6776200 4301400 11078000 6776200 4301400 0 0 0 2170 672 2224 7958;7959 12019;12020;12021 12020 3 DYLLMEEEFIR HTQCRLKLLKLERIKDYLLMEEEFIRNQEQ ERIKDYLLMEEEFIRNQEQMKPLEEKQEEE K D Y I R N 0 1 0 1 0 0 3 0 0 1 2 0 1 1 0 0 0 0 1 0 0 0 11 0 1456.6908 Q53XL8;Q53HB3;P62191 Q53XL8 70 80 PSMC1 26S protease regulatory subunit 4 yes no 2 0.019963 51.445 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2099000 0 2099000 0 0 0 2099000 0 2099000 2171 1398 2225 7960 12022 12022 611 1 DYLLSESEDEGDNDGERK LLALSQQEELADLPKDYLLSESEDEGDNDG LSESEDEGDNDGERKHQKLLEAISSLDGKN K D Y R K H 0 1 1 4 0 0 4 2 0 0 2 1 0 0 0 2 0 0 1 0 0 0 18 1 2069.8662 Q9BVJ6;O60531 Q9BVJ6 25 42 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 1.404E-05 113.76 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2172 1719 2226 7961;7962 12023;12024 12024 2 DYNTALSLHK ENRTRYAFVMFKTLKDYNTALSLHKTVLQY FKTLKDYNTALSLHKTVLQYRPVHIDPISR K D Y H K T 1 0 1 1 0 0 0 0 1 0 2 1 0 0 0 1 1 0 1 0 0 0 10 0 1160.5826 B9ZVT1;Q8IXT5 B9ZVT1 336 345 RBM12B RNA-binding protein 12B yes no 2 0.01713 56.013 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5144000 5144000 0 5144000 5144000 0 0 0 0 2173 931 2227 7963 12025 12025 1 DYQELMNTK DALQQAKEDLARLLRDYQELMNTKLALDLE LARLLRDYQELMNTKLALDLEIATYRTLLE R D Y T K L 0 0 1 1 0 1 1 0 0 0 1 1 1 0 0 0 1 0 1 0 0 0 9 0 1140.5121 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 464 472 KRT1 Keratin, type II cytoskeletal 1 no no 2 0.0013297 83.783 1 3 0.10397 0.1327 NaN 1 Median 0.10397 0.1327 NaN 1 0 Median NaN NaN NaN 0 0 Median 37964000 36267000 1697100 14008000 12311000 1697100 23956000 23956000 0 + 2174 1113;1114 2228;2229 7964;7965;7966;7967 12026;12027;12028;12029 12027 4 DYQELMNVK EALQQAKEDLARLLRDYQELMNVKLALDVE LARLLRDYQELMNVKLALDVEIATYRKLLE R D Y V K L 0 0 1 1 0 1 1 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 9 0 1138.5329 CON__P35908;P35908;Q01546;CON__Q01546;CON__Q5XKE5;Q5XKE5 CON__P35908 468 476 KRT2;KRT76;KRT79 Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 79 no no 2 0.033851 48.561 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5114100 5114100 0 0 0 0 5114100 5114100 0 + 2175 964;972 2230 7968;7969 12030;12031 12030 2 DYSLLPLLAAAPQVGEK NSSTIIQNPVETPKKDYSLLPLLAAAPQVG SLLPLLAAAPQVGEKIAFKLLELTSSYSPD K D Y E K I 3 0 0 1 0 1 1 1 0 0 4 1 0 0 2 1 0 0 1 1 0 0 17 0 1783.972 P38432 P38432 460 476 COIL Coilin yes yes 2 5.8377E-13 127.78 3 0.72136 0.90981 3.2964 3 Median 0.72136 0.90981 3.2964 3 0 Median NaN NaN NaN 0 0 Median 25012000 15127000 9885100 25012000 15127000 9885100 0 0 0 2176 1328 2231 7970;7971;7972 12032;12033;12034;12035;12036;12037;12038 12036 7 DYTQYYDHISK RCFVKENKLIGISQRDYTQYYDHISKQKEE ISQRDYTQYYDHISKQKEEIRRCIQDFFKK R D Y S K Q 0 0 0 2 0 1 0 0 1 1 0 1 0 0 0 1 1 0 3 0 0 0 11 0 1431.6307 O75794;X6RF82;H7BZW7 O75794 194 204 CDC123 Cell division cycle protein 123 homolog yes no 2 0.0013747 79.07 2 0.38651 0.49246 NaN 1 Median 0.38651 0.49246 NaN 1 0 Median NaN NaN NaN 0 0 Median 9200300 6975400 2224900 9200300 6975400 2224900 0 0 0 2177 1208 2232 7973;7974 12039;12040 12040 2 DYVAPTANLDQK AAERFAKERRLRIWRDYVAPTANLDQKDKQ IWRDYVAPTANLDQKDKQFVAKVMQVLNAD R D Y Q K D 2 0 1 2 0 1 0 0 0 0 1 1 0 0 1 0 1 0 1 1 0 0 12 0 1333.6514 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B4E299;B3KU67;I6TRR8 A0A140VK49 328 339 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.00035411 76.282 1 1 0.91402 1.2245 142.41 2 Median 0.36838 0.44733 NaN 1 0 Median 2.2678 3.3517 NaN 1 0 Median 28206000 17645000 10561000 21849000 15140000 6709100 6356600 2504900 3851700 2178 508 2233 7975;7976 12041;12042 12041 2 DYVDLFR SGEVRTGKWKVPTYKDYVDLFRHLLSSDQM KWKVPTYKDYVDLFRHLLSSDQMMDSILAD K D Y F R H 0 1 0 2 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 7 0 926.44978 P78527;B4DL41 P78527 526 532 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.01841 79.454 1 1 0.54449 0.71774 36.862 2 Median 0.4131 0.55305 NaN 1 0 Median 0.71767 0.93147 NaN 1 0 Median 12550000 8320800 4228700 7419000 5445800 1973200 5130500 2875100 2255400 2179 1427 2234 7977;7978 12043;12044 12043 2 DYYQTLGLAR ______________________________ ______________________________ K D Y A R G 1 1 0 1 0 1 0 1 0 0 2 0 0 0 0 0 1 0 2 0 0 0 10 0 1198.5982 Q6FI51;Q6FHS4;P25685;B4DKK9 Q6FI51 4 13 DNAJB1 DnaJ homolog subfamily B member 1 yes no 2 0.023567 51.346 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2180 1297 2235 7979 12045 12045 1 EAAAAAAAAHQQALREESGAGDKG AEQEKKAAALRLKEKEAAAAAAAAHQQALR HQQALREESGAGDKG_______________ K E A K G - 10 1 0 1 0 2 3 3 1 0 1 1 0 0 0 1 0 0 0 0 0 0 24 2 2279.089 A0A1C7CYX1 A0A1C7CYX1 1076 1099 yes yes 3 0.0022692 29.447 1 0.40146 0.51799 NaN 1 Median 0.40146 0.51799 NaN 1 0 Median NaN NaN NaN 0 0 Median 4526700 2679700 1847000 4526700 2679700 1847000 0 0 0 2181 523 2236 7980 12046 12046 1 EAAAALVEEETRR ALPYFDQGYEAPGVREAAAALVEEETRRYR VREAAAALVEEETRRYRPTKNYLSYLTAPD R E A R R Y 4 2 0 0 0 0 4 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 13 1 1443.7318 Q53HE3;B2R7W3;O75934 Q53HE3 30 42 BCAS2 Pre-mRNA-splicing factor SPF27 yes no 2 3.0683E-11 143.4 4 0.4918 0.68213 NaN 1 Median 0.4918 0.68213 NaN 1 0 Median NaN NaN NaN 0 0 Median 11953000 3089200 8864000 11953000 3089200 8864000 0 0 0 2182 710 2237 7981;7982;7983;7984 12047;12048;12049;12050 12048 4 EAAENSLVAYK YHRYLAEFATGNDRKEAAENSLVAYKAASD NDRKEAAENSLVAYKAASDIAMTELPPTHP K E A Y K A 3 0 1 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 1 1 0 0 11 0 1193.5928 V9HW98;G9K389;G9K388;P62258;B7ZA86;K7EM20 V9HW98 143 153 HEL2;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion;YWHAE 14-3-3 protein epsilon yes no 2 8.7002E-11 160.59 3 2 0.91511 1.2289 20.553 3 Median 0.69975 0.88366 NaN 1 0 Median 0.93347 1.2585 3.3616 2 0 Median 15843000 7954400 7888700 8950800 5019000 3931800 6892300 2935400 3956900 2183 1085 2238 7985;7986;7987;7988;7989 12051;12052;12053;12054;12055 12051 5 EAAFDDAVEER ______________________________ MADKEAAFDDAVEERVINEEYKIWKKNTPF K E A E R V 3 1 0 2 0 0 3 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 11 0 1250.5415 Q09028;E9PNS6;E9PNS2;E9PIC4 Q09028 5 15 RBBP4 Histone-binding protein RBBP4 yes no 2 5.1699E-07 144.65 4 2 0.75057 1.0148 28.557 6 Median 0.73113 1.0052 7.1683 4 0 Median 1.0183 1.6716 5.3331 2 0 Median 436450000 228150000 208300000 166720000 95752000 70965000 269730000 132400000 137330000 2184 1452 2239 7990;7991;7992;7993;7994;7995 12056;12057;12058;12059;12060;12061;12062;12063;12064;12065;12066;12067 12059 12 EAAGTTAAAGTGGATEQPPR ______________________________ TAAAGTGGATEQPPRHREHKKHKHRSGGSG K E A P R H 6 1 0 0 0 1 2 4 0 0 0 0 0 0 2 0 4 0 0 0 0 0 20 0 1812.8602 O43290;E9PQI8;B4DP43 O43290 12 31 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes no 2 2.1188E-07 107.35 4 2 0.96127 1.3211 11.457 6 Median 0.91064 1.2474 13.438 4 0 Median 0.96127 1.3464 5.4374 2 0 Median 22775000 12174000 10601000 9498500 5257100 4241400 13276000 6916500 6360000 2185 1184 2240 7996;7997;7998;7999;8000;8001 12068;12069;12070;12071;12072;12073 12069 6 EAALAEVADEK GKEADAEANHREAGKEAALAEVADEKMLSG EAGKEAALAEVADEKMLSGLTKDLQRSLPP K E A E K M 4 0 0 1 0 0 3 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 11 0 1144.5612 Q15003;B4DRG7;E9PHA2;A8K4T8;H7C415 Q15003 675 685 NCAPH Condensin complex subunit 2 yes no 2 8.5259E-12 160.75 2 1 0.70201 0.92022 14.449 3 Median 0.70755 0.9211 0.13463 2 0 Median 0.45952 0.71717 NaN 1 0 Median 277290000 168960000 108330000 161090000 96292000 64795000 116200000 72672000 43531000 2186 1500 2241 8002;8003;8004 12074;12075;12076;12077;12078;12079 12076 6 EAALGAGFSDK FGTVIQEVKTSNVAREAALGAGFSDKTPAH NVAREAALGAGFSDKTPAHTVTMACISANQ R E A D K T 3 0 0 1 0 0 1 2 0 0 1 1 0 1 0 1 0 0 0 0 0 0 11 0 1064.5138 P55084;D6W539;B4DY96;B5MD38;F5GZQ3;C9JEY0;C9JE81;B4DDC9;Q92799 P55084 118 128 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 0.0011859 90.108 4 2 0.67025 0.84793 16.906 6 Median 0.67375 0.80615 5.0405 4 0 Linear 0.74033 1.1043 10.913 2 0 Median 53786000 33498000 20288000 36801000 23886000 12914000 16986000 9611700 7374100 2187 1378 2242 8005;8006;8007;8008;8009;8010 12080;12081;12082;12083;12084;12085;12086;12087;12088 12086 9 EAALSQEQIQILAK ETKQNLTGLCQKVCKEAALSQEQIQILAKY KEAALSQEQIQILAKYSAADCPLSFLISEK K E A A K Y 3 0 0 0 0 3 2 0 0 2 2 1 0 0 0 1 0 0 0 0 0 0 14 0 1540.8461 A8K4Q6;O14867 A8K4Q6 627 640 BACH1 Transcription regulator protein BACH1 yes no 2 0.0077949 94.82 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2188 607 2243 8011 12089 12089 1 EAALSTALSEK AQARLKDLEALLNSKEAALSTALSEKRTLE LNSKEAALSTALSEKRTLEGELHDLRGQVA K E A E K R 3 0 0 0 0 0 2 0 0 0 2 1 0 0 0 2 1 0 0 0 0 0 11 0 1118.5819 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;Q5TCI8;H0YAB0 P02545 145 155 LMNA Prelamin-A/C;Lamin-A/C yes no 2 3.1867E-06 112.3 2 2 1.138 1.6331 64.993 4 Median 0.70575 0.92505 4.73 2 0 Median 1.7805 2.8475 2.9643 2 0 Median 318200000 162820000 155380000 221610000 128190000 93425000 96592000 34636000 61957000 2189 1229 2244 8012;8013;8014;8015 12090;12091;12092;12093;12094;12095;12096 12094 7 EAALSTALSEKR AQARLKDLEALLNSKEAALSTALSEKRTLE NSKEAALSTALSEKRTLEGELHDLRGQVAK K E A K R T 3 1 0 0 0 0 2 0 0 0 2 1 0 0 0 2 1 0 0 0 0 0 12 1 1274.683 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;Q5TCI8;H0YAB0 P02545 145 156 LMNA Prelamin-A/C;Lamin-A/C yes no 2 2.2698E-06 121.61 4 0.70664 0.92794 21.785 4 Median 0.70664 0.92794 21.785 4 0 Median NaN NaN NaN 0 0 Median 29954000 15372000 14582000 29954000 15372000 14582000 0 0 0 2190 1229 2245 8016;8017;8018;8019 12097;12098;12099;12100;12101;12102;12103;12104 12101 8 EAALTSEEVGADLEQVEVLQK LFREANELQQWINEKEAALTSEEVGADLEQ EEVGADLEQVEVLQKKFDDFQKDLKANESR K E A Q K K 3 0 0 1 0 2 5 1 0 0 3 1 0 0 0 1 1 0 0 3 0 0 21 0 2257.1325 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8;Q9UG16 Q13813 1111 1131 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 1.197E-155 278.36 5 0.88191 1.1023 9.8307 4 Median 0.88191 1.1023 9.8307 4 0 Median NaN NaN NaN 0 0 Median 71593000 37760000 33834000 71593000 37760000 33834000 0 0 0 2191 1476 2246 8020;8021;8022;8023;8024 12105;12106;12107;12108;12109;12110;12111;12112;12113 12109 9 EAALVQQEEEK RLARVNEQRMKAAEKEAALVQQEEEKAEQR AAEKEAALVQQEEEKAEQRKRARAEKKALK K E A E K A 2 0 0 0 0 2 4 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 11 0 1272.6198 Q15020;B4DYA2;B4DRG9;F8VV04;B4E3R6 Q15020 587 597 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 0.0013812 70.028 2 2.9828 3.9791 NaN 1 Median NaN NaN NaN 0 0 Median 2.9828 3.9791 NaN 1 0 Median 5384300 888040 4496300 0 0 0 5384300 888040 4496300 2192 1501 2247 8025;8026 12114;12115 12115 2 EAASLLEAGEERPGEQSQGTQSQGSALQDPECFAHLLR EFFEVANDVIPNLLKEAASLLEAGEERPGE GSALQDPECFAHLLRFYDGICKWEEGSPTP K E A L R F 5 2 0 1 1 5 6 4 1 0 5 0 0 1 2 4 1 0 0 0 0 0 38 1 4095.9192 A0A024R570;A0A024R5E3;A0A024R5D2;O00255;Q9UE24 A0A024R570 343 380 MEN1 Menin yes no 4 2.3136E-15 84.736 2 1 0.67397 0.91746 6.9582 2 Median 0.67397 0.91746 6.9582 2 0 Median NaN NaN NaN 0 0 Median 28288000 14556000 13732000 19846000 9979000 9867300 8441300 4576500 3864800 2193 135 2248 8027;8028;8029 12116;12117;12118;12119;12120;12121;12122 12120 7 EAATQAQQTLGSTIDK ARETLKNSALSAQLREAATQAQQTLGSTID AATQAQQTLGSTIDKATGILLYGLASRLRD R E A D K A 3 0 0 1 0 3 1 1 0 1 1 1 0 0 0 1 3 0 0 0 0 0 16 0 1660.8268 B4DNN3;Q53HS0;A8K3A8;P47897;F2Z2V6;I3QNU8;B4DTH6;A0A0U1RQM8;A0A0U1RQU2;B7Z840;C9J165;A0A0U1RQT0 B4DNN3 35 50 QARS Glutamine--tRNA ligase yes no 2 2.8915E-42 195.71 4 0.41784 0.55023 14.708 3 Median 0.41784 0.55023 14.708 3 0 Median NaN NaN NaN 0 0 Median 18120000 13848000 4272400 18120000 13848000 4272400 0 0 0 2194 591 2249 8030;8031;8032;8033 12123;12124;12125;12126;12127;12128;12129 12125 7 EAATQEDPEQLPELEAHGVSESEGEERPVAEEEILLR GPNPWMLRSCTSDTKEAATQEDPEQLPELE EGEERPVAEEEILLREFEERRSLRKRSELS K E A L R E 4 2 0 1 0 2 12 2 1 1 4 0 0 0 3 2 1 0 0 2 0 0 37 1 4114.9455 Q9BVJ6;B4E343;X6RJY0 Q9BVJ6 386 422 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 4 5.1025E-15 60.971 3 2 0.95509 1.2944 19.423 5 Median 1.0158 1.3671 10.745 3 0 Median 0.65859 1.0534 15.68 2 0 Median 294580000 160330000 134250000 120400000 58174000 62225000 174190000 102160000 72028000 2195 1719 2250 8034;8035;8036;8037;8038 12130;12131;12132;12133;12134;12135;12136;12137;12138;12139;12140 12140 11 EACGVIVELIK AKQAASGLVGQENAREACGVIVELIKSKKM ENAREACGVIVELIKSKKMAGRAVLLAGPP R E A I K S 1 0 0 0 1 0 2 1 0 2 1 1 0 0 0 0 0 0 0 2 0 0 11 0 1229.669 B5BUB1;Q9Y265 B5BUB1 47 57 RUVBL1 RuvB-like 1 yes no 2 0.0014793 104.42 3 2 0.61124 0.77851 33.244 5 Median 0.60687 0.74982 2.934 3 0 Median 0.92163 1.3758 8.1521 2 0 Median 85508000 47467000 38042000 59346000 34601000 24744000 26163000 12865000 13298000 2196 896 2251 8039;8040;8041;8042;8043 12141;12142;12143;12144;12145;12146;12147;12148;12149 12146 9 EACLSILGHFPR GGRRAPGRGQQGLTREACLSILGHFPRALV LTREACLSILGHFPRALVWVSLSLLSKGSP R E A P R A 1 1 0 0 1 0 1 1 1 1 2 0 0 1 1 1 0 0 0 0 0 0 12 0 1398.7078 Q96F88;Q99575 Q96F88 843 854 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 3 0.00029621 124.67 2 0.35055 0.47783 NaN 1 Median 0.35055 0.47783 NaN 1 0 Median NaN NaN NaN 0 0 Median 12053000 10056000 1997600 12053000 10056000 1997600 0 0 0 2197 1685 2252 8044;8045 12150;12151;12152 12150 3 EACPELDYFVVFSSVSCGR KPKYSGTLNLDRVTREACPELDYFVVFSSV ELDYFVVFSSVSCGRGNAGQSNYGFANSAM R E A G R G 1 1 0 1 2 0 2 1 0 0 1 0 0 2 1 3 0 0 1 3 0 0 19 0 2220.982 A0A0U1RQF0;P49327 A0A0U1RQF0 2006 2024 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 5.1261E-06 112.02 4 0.75757 1.0388 6.6049 2 Median 0.75757 1.0388 6.6049 2 0 Median NaN NaN NaN 0 0 Median 6476500 4564100 1912400 6476500 4564100 1912400 0 0 0 2198 486 2253 8046;8047;8048;8049 12153;12154;12155;12156;12157 12157 4 EADGSETPEPFAAEAK VTVMLSGIKCPTFRREADGSETPEPFAAEA ADGSETPEPFAAEAKFFTESRLLQRDVQII R E A A K F 4 0 0 1 0 0 4 1 0 0 0 1 0 1 2 1 1 0 0 0 0 0 16 0 1647.7264 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B4E299;B3KU67;I6TRR8 A0A140VK49 234 249 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 3.9281E-10 132.86 3 1 0.41791 0.53764 98.813 4 Median 0.41403 0.53251 17.086 3 0 Median 2.2799 3.4467 NaN 1 0 Median 34679000 17606000 17072000 19765000 13125000 6640200 14914000 4481600 10432000 2199 508 2254 8050;8051;8052;8053 12158;12159;12160;12161;12162;12163;12164 12159 7 EADLAAQEEAAKK AAFQKERAIFLAAQKEADLAAQEEAAKK__ QKEADLAAQEEAAKK_______________ K E A K K - 5 0 0 1 0 1 3 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 13 1 1372.6834 Q53G19;Q9Y3B7 Q53G19 180 192 MRPL11 39S ribosomal protein L11, mitochondrial yes no 2 0.0050594 84.31 2 0.57814 0.69769 64.257 2 Median 0.57814 0.69769 64.257 2 0 Median NaN NaN NaN 0 0 Median 2594200 1322700 1271500 2594200 1322700 1271500 0 0 0 2200 1540 2255 8054;8055 12165;12166 12166 2 EADTDVQVCPNYSIPQK YIAASTAKPPKEILKEADTDVQVCPNYSIP DTDVQVCPNYSIPQKTDSYFNPKMRLNRQL K E A Q K T 1 0 1 2 1 2 1 0 0 1 0 1 0 0 2 1 1 0 1 2 0 0 17 0 1962.8993 B4DXX1;B2R713;Q7Z2T5 B4DXX1 75 91 TRMT1L TRMT1-like protein yes no 2 4.6657E-10 142.83 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 517430 517430 0 517430 517430 0 0 0 0 2201 702 2256 8056 12167 12167 1 EAEAAIYHLQLFEELRR DYPLEAVRMQHLIAREAEAAIYHLQLFEEL EAAIYHLQLFEELRRLAPITSDPTEATAVG R E A R R L 3 2 0 0 0 1 4 0 1 1 3 0 0 1 0 0 0 0 1 0 0 0 17 1 2087.08 V9HWB8;P14618;B4DNK4;Q8WUW7;Q9UKK4;Q9UN47;Q9NYI7 V9HWB8 384 400 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 3 7.1535E-05 96.135 3 2 0.85851 1.1677 101.18 4 Median 0.7675 1.0631 15.801 3 0 Median 5.4948 8.0742 NaN 1 0 Median 69007000 29037000 39970000 47763000 27479000 20285000 21244000 1558500 19686000 2202 1267 2257 8057;8058;8059;8060;8061 12168;12169;12170;12171;12172;12173;12174 12168 7 EAEDGIIAYDDCGVK FSNPKTTSPNKGKEKEAEDGIIAYDDCGVK EAEDGIIAYDDCGVKLTIAFQAKDVEGSTS K E A V K L 2 0 0 3 1 0 2 2 0 2 0 1 0 0 0 0 0 0 1 1 0 0 15 0 1653.7192 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0;Q9UG93 Q9GZV0 422 436 CSDE1;UNR;DKFZp586J0620 Cold shock domain-containing protein E1 yes no 2 3.1265E-10 101.89 5 0.50413 0.62677 NaN 1 Median 0.50413 0.62677 NaN 1 0 Median NaN NaN NaN 0 0 Median 17326000 11816000 5510000 17326000 11816000 5510000 0 0 0 2203 31 2258 8062;8063;8064;8065;8066 12175;12176;12177;12178;12179;12180 12177 6 EAEEEELEIPPQYQAGGSGIHRPVAK VIIRNKKHQKLKHQKEAEEEELEIPPQYQA QYQAGGSGIHRPVAKKAMPGAEYKAKKAKG K E A A K K 3 1 0 0 0 2 6 3 1 2 1 1 0 0 3 1 0 0 1 1 0 0 26 1 2833.3883 B3KMR5;Q5JTH9;B3KY97;B3KPQ2 B3KMR5 1200 1225 RRP12 RRP12-like protein yes no 4 0.04739 11.311 1 0.72639 1.1337 NaN 1 Median NaN NaN NaN 0 0 Median 0.72639 1.1337 NaN 1 0 Median 6564200 3292100 3272100 0 0 0 6564200 3292100 3272100 2204 756 2259 8067 12181 12181 1 EAEEVMDAGCQESAGPER HQPSDEVGTSIEHPREAEEVMDAGCQESAG EVMDAGCQESAGPERITDQEASENHVAATG R E A E R I 3 1 0 1 1 1 5 2 0 0 0 0 1 0 1 1 0 0 0 1 0 0 18 0 1963.7888 Q96F88;Q99575 Q96F88 768 785 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 0.0002916 44.44 1 0.38887 0.55996 NaN 1 Median NaN NaN NaN 0 0 Median 0.38887 0.55996 NaN 1 0 Median 6236100 4417700 1818400 0 0 0 6236100 4417700 1818400 2205 1685 2260 8068 12182 12182 761 1 EAELQAVLHPEFHIQFLGGK QVDLVWALCVLQQAREAELQAVLHPEFHIQ AVLHPEFHIQFLGGKSQKDQNTFQKLLHIN R E A G K S 2 0 0 0 0 2 3 2 2 1 3 1 0 2 1 0 0 0 0 1 0 0 20 0 2262.1797 B3KM73;D3DVL7;B4DU42;Q969Z0;B3KRS4;B3KMT3 B3KM73 314 333 TBRG4 Protein TBRG4 yes no 4 0.00027205 83.964 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1785300 1785300 0 1785300 1785300 0 0 0 0 2206 752 2261 8069 12183 12183 1 EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK EGAELMESVMDVVRKEAESCDCLQGFQLTH GGGTGSGMGTLLLSKIREEYPDRIINTFSI K E A S K I 1 0 0 1 2 2 2 7 1 0 6 1 1 1 0 4 3 0 0 0 0 0 32 0 3310.5268 Q3ZCM7;A0A075B736;Q5SQY0;A0A183YE00 Q3ZCM7 123 154 TUBB8 Tubulin beta-8 chain yes no 3 1.0524E-44 152.16 3 0.406 0.51697 7.0416 3 Median 0.406 0.51697 7.0416 3 0 Median NaN NaN NaN 0 0 Median 89598000 67118000 22480000 89598000 67118000 22480000 0 0 0 2207 1532 2262 8070;8071;8072 12184;12185;12186;12187;12188;12189 12185 6 EAEYEESVAK TREPLILEEEREMEREAEYEESVAKEDQPA REMEREAEYEESVAKEDQPAVPGETQGDSY R E A A K E 2 0 0 0 0 0 4 0 0 0 0 1 0 0 0 1 0 0 1 1 0 0 10 0 1153.5139 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 720 729 WDR3 WD repeat-containing protein 3 yes no 2 0.0079329 68.371 1 0.80263 1.2094 NaN 1 Median NaN NaN NaN 0 0 Median 0.80263 1.2094 NaN 1 0 Median 8130100 4631800 3498300 0 0 0 8130100 4631800 3498300 2208 1576 2263 8073 12190 12190 1 EAFAGDDVIR ELEDEEERNHRQMIKEAFAGDDVIRDFLKE RQMIKEAFAGDDVIRDFLKEKREAVEASKP K E A I R D 2 1 0 2 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 10 0 1091.5247 Q9BVJ6;B4E343;Q08E77;A0A024RDV0;Q5TAP6 Q9BVJ6 597 606 UTP14A;UTP14C;hCG_1811699 U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C yes no 2 0.015322 54.982 1 2 0.72217 1.0464 0.95874 2 Median NaN NaN NaN 0 0 Median 0.72217 1.0464 0.95874 2 0 Median 13522000 7437500 6084200 0 0 0 13522000 7437500 6084200 2209 1719 2264 8074;8075;8076 12191;12192;12193 12193 3 EAFAGDDVIRDFLK ELEDEEERNHRQMIKEAFAGDDVIRDFLKE KEAFAGDDVIRDFLKEKREAVEASKPKDVD K E A L K E 2 1 0 3 0 0 1 1 0 1 1 1 0 2 0 0 0 0 0 1 0 0 14 1 1594.7991 Q9BVJ6;B4E343;Q08E77;A0A024RDV0;Q5TAP6 Q9BVJ6 597 610 UTP14A;UTP14C;hCG_1811699 U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C yes no 2;3 2.876E-26 157.56 8 2 0.94408 1.2668 4.7507 7 Median 0.94731 1.256 4.7894 5 0 Median 0.78324 1.3177 5.5746 2 0 Median 187780000 92187000 95596000 130820000 61052000 69763000 56968000 31135000 25833000 2210 1719 2265 8077;8078;8079;8080;8081;8082;8083;8084;8085;8086 12194;12195;12196;12197;12198;12199;12200;12201;12202;12203;12204;12205;12206;12207;12208;12209 12197 16 EAFFHQELPLYIPPPIFSR HTSMYDKVLMLRPEKEAFFHQELPLYIPPP HQELPLYIPPPIFSRLDAPVDYFYRPETQH K E A S R L 1 1 0 0 0 1 2 0 1 2 2 0 0 3 4 1 0 0 1 0 0 0 19 0 2300.1994 Q5T7U1;Q9Y5Q8;Q5T7U0;B7Z1V3;Q5T7U4 Q5T7U1 157 175 GTF3C5 General transcription factor 3C polypeptide 5 yes no 3 0.00019735 80.859 2 0.50396 0.70647 NaN 1 Median 0.50396 0.70647 NaN 1 0 Median NaN NaN NaN 0 0 Median 3700200 3005500 694660 3700200 3005500 694660 0 0 0 2211 1572 2266 8087;8088 12210;12211;12212 12211 3 EAFLNTEDKGDSLDSVEALIK FHRDCEQAENWMAAREAFLNTEDKGDSLDS EDKGDSLDSVEALIKKHEDFDKAINVQEEK R E A I K K 2 0 1 3 0 0 3 1 0 1 3 2 0 1 0 2 1 0 0 1 0 0 21 1 2293.1325 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16 Q13813 1465 1485 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 3 2.7063E-26 148.85 4 0.92293 1.134 15.638 4 Median 0.92293 1.134 15.638 4 0 Median NaN NaN NaN 0 0 Median 121980000 60168000 61817000 121980000 60168000 61817000 0 0 0 2212 1476 2267 8089;8090;8091;8092 12213;12214;12215;12216;12217;12218;12219;12220 12214 8 EAFLVNSDLTLR SYIGLSFQDFYQQCREAFLVNSDLTLRAQL QCREAFLVNSDLTLRAQLTEFRDHKLIRTK R E A L R A 1 1 1 1 0 0 1 0 0 0 3 0 0 1 0 1 1 0 0 1 0 0 12 0 1376.73 A0A024R411;Q13416 A0A024R411 522 533 ORC2L;ORC2 Origin recognition complex subunit 2 yes no 2 2.4522E-07 113.93 2 1 0.66077 0.90493 NaN 1 Median 0.66077 0.90493 NaN 1 0 Median NaN NaN NaN 0 0 Median 16767000 13267000 3500200 9761300 6261000 3500200 7006100 7006100 0 2213 114 2268 8093;8094;8095 12221;12222;12223;12224 12222 4 EAFQLFDR ______________________________ DQTAEFKEAFQLFDRTGDGKILYSQCGDVM K E A D R T 1 1 0 1 0 1 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 8 0 1024.4978 F8W1R7;J3KND3;G8JLA2;G3V1V0;B7Z6Z4;P60660;G3V1Y7 F8W1R7 14 21 MYL6 Myosin light polypeptide 6 yes no 2 0.00024169 109.36 4 1.1111 1.5001 11.814 2 Median 1.1111 1.5001 11.814 2 0 Median NaN NaN NaN 0 0 Median 82288000 61169000 21119000 82288000 61169000 21119000 0 0 0 2214 915 2269 8096;8097;8098;8099 12225;12226;12227;12228;12229 12228 5 EAFSLFDK ______________________________ EQIAEFKEAFSLFDKDGDGTITTKELGTVM K E A D K D 1 0 0 1 0 0 1 0 0 0 1 1 0 2 0 1 0 0 0 0 0 0 8 0 955.4651 Q9BRL5;P0DP25;P0DP24;P0DP23;B4DJ51;B2RDW0;H0Y7A7;E7ETZ0;E7EMB3;A8K1M2;F8WBR5;M0QZ52;G3V479;P27482 Q9BRL5 15 22 CALM3;CALM2;CALM1;CALML3 Calmodulin-like protein 3 yes no 2 0.011056 98.458 4 2 0.95668 1.1997 20.728 6 Median 0.91333 1.142 13.773 4 0 Median 1.0351 1.5542 1.855 2 0 Median 206310000 106710000 99609000 182580000 95207000 87378000 23730000 11499000 12231000 2215 741 2270 8100;8101;8102;8103;8104;8105 12230;12231;12232;12233;12234;12235;12236 12234 7 EAFTNKPNVFTVVTR GCQPSRVQAQGPGLKEAFTNKPNVFTVVTR EAFTNKPNVFTVVTRGAGIGGLGITVEGPS K E A T R G 1 1 2 0 0 0 1 0 0 0 0 1 0 2 1 0 3 0 0 3 0 0 15 1 1721.9101 O75369;A0A024R321;Q68CT4;E7EN95 O75369 1340 1354 FLNB;DKFZp686A1668 Filamin-B yes no 3 0.018972 26.148 1 1.0933 1.3956 NaN 1 Median 1.0933 1.3956 NaN 1 0 Median NaN NaN NaN 0 0 Median 9131200 4954900 4176200 9131200 4954900 4176200 0 0 0 2216 1199 2271 8106 12237 12237 1 EAGAGGLAIAVEGPSK RAEAGVPAEFSIWTREAGAGGLAIAVEGPS AGAGGLAIAVEGPSKAEISFEDRKDGSCGV R E A S K A 4 0 0 0 0 0 2 4 0 1 1 1 0 0 1 1 0 0 0 1 0 0 16 0 1425.7464 P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5;Q2VP91;H0Y5C6 P21333 2265 2280 FLNA;FLJ00119 Filamin-A yes no 2 0.00050512 88.075 3 1 0.95322 1.2072 11.377 3 Median 0.95322 1.2072 11.377 3 0 Median NaN NaN NaN 0 0 Median 73443000 30766000 42677000 69063000 30766000 38297000 4380500 0 4380500 2217 1287 2272 8107;8108;8109;8110 12238;12239;12240;12241;12242;12243 12242 6 EAGAGGLSIAVEGPSK RGEAGVPAEFSIWTREAGAGGLSIAVEGPS AGAGGLSIAVEGPSKAEITFDDHKNGSCGV R E A S K A 3 0 0 0 0 0 2 4 0 1 1 1 0 0 1 2 0 0 0 1 0 0 16 0 1441.7413 O75369;A0A024R321;Q68CT4;E7EN95;Q14315;Q59H94 O75369 2220 2235 FLNB;DKFZp686A1668;FLNC Filamin-B;Filamin-C no no 2 3.7579E-15 153.75 4 1.5471 1.9621 NaN 1 Median 1.5471 1.9621 NaN 1 0 Median NaN NaN NaN 0 0 Median 16113000 8999500 7113400 16113000 8999500 7113400 0 0 0 2218 1199;1486 2273 8111;8112;8113;8114 12244;12245;12246;12247;12248;12249 12244 6 EAGDVCYADVQK LPPSGSWQDLKDHMREAGDVCYADVQKDGV HMREAGDVCYADVQKDGVGMVEYLRKEDME R E A Q K D 2 0 0 2 1 1 1 1 0 0 0 1 0 0 0 0 0 0 1 2 0 0 12 0 1353.5871 Q13242;H0YIB4 Q13242 133 144 SRSF9 Serine/arginine-rich splicing factor 9 yes no 2 2.7798E-08 124.67 3 2 0.82983 1.0317 27.358 5 Median 0.82983 1.0317 13.794 3 0 Plateau 1.0244 1.4414 11.104 2 0 Median 25833000 14020000 11813000 16552000 9858300 6693800 9280700 4161500 5119200 2219 1467 2274 8115;8116;8117;8118;8119 12250;12251;12252;12253;12254;12255;12256;12257 12253 7 EAGDVCYADVYR LPPSGSWQDLKDHMREAGDVCYADVYRDGT HMREAGDVCYADVYRDGTGVVEFVRKEDMT R E A Y R D 2 1 0 2 1 0 1 1 0 0 0 0 0 0 0 0 0 0 2 2 0 0 12 0 1416.598 J3KTL2;Q07955;Q59FA2;A8K1L8;J3KSR8;B7Z570 J3KTL2 143 154 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 6.1141E-29 166.66 2 2 0.58299 0.84083 22.41 4 Median 0.51177 0.70528 0.43154 2 0 Median 0.68286 1.0362 5.1193 2 0 Median 153250000 93012000 60236000 117320000 71559000 45762000 35927000 21453000 14474000 2220 1139 2275 8120;8121;8122;8123 12258;12259;12260;12261;12262;12263;12264 12261 7 EAGDVCYADVYRDGTGVVEFVR LPPSGSWQDLKDHMREAGDVCYADVYRDGT ADVYRDGTGVVEFVRKEDMTYAVRKLDNTK R E A V R K 2 2 0 3 1 0 2 3 0 0 0 0 0 1 0 0 1 0 2 5 0 0 22 1 2476.1329 J3KTL2;Q07955;Q59FA2;J3KSR8;B7Z570 J3KTL2 143 164 SRSF1 Serine/arginine-rich splicing factor 1 yes no 3 5.5664E-08 70.334 4 0.52997 0.72037 5.3833 4 Median 0.52997 0.72037 5.3833 4 0 Median NaN NaN NaN 0 0 Median 47999000 30189000 17810000 47999000 30189000 17810000 0 0 0 2221 1139 2276 8124;8125;8126;8127 12265;12266;12267;12268;12269;12270;12271;12272 12269 8 EAGELKPEEEITVGPVQK RSLGEIPIVESEIKKEAGELKPEEEITVGP ELKPEEEITVGPVQKLVTEMGTYATQSALS K E A Q K L 1 0 0 0 0 1 5 2 0 1 1 2 0 0 2 0 1 0 0 2 0 0 18 1 1952.0102 P53618 P53618 496 513 COPB1 Coatomer subunit beta yes yes 3 8.2879E-19 140.68 4 2 0.44755 0.54255 3.7466 3 Median 0.44755 0.54255 3.7466 3 0 Median NaN NaN NaN 0 0 Median 28971000 16867000 12105000 21587000 16867000 4720400 7384300 0 7384300 2222 1370 2277 8128;8129;8130;8131;8132;8133 12273;12274;12275;12276;12277;12278;12279;12280;12281;12282 12276 10 EAGENAPVLSDDELVSMSVR MTTNPKPNKALKVKKEAGENAPVLSDDELV APVLSDDELVSMSVRELNQHLRGLTKEEVT K E A V R E 2 1 1 2 0 0 3 1 0 0 2 0 1 0 1 3 0 0 0 3 0 0 20 0 2116.9947 A0A024R804;A8WFP5;O60675 A0A024R804 16 35 MAFK Transcription factor MafK yes no 2 0.00083987 87.519 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2051200 0 2051200 2051200 0 2051200 0 0 0 2223 188 2278 8134;8135 12283;12284 12283 2 EAGFGGGPNATITTSLK AWQAVEPSDIAACFREAGFGGGPNATITTS GFGGGPNATITTSLKSEGEEEEEEEEEEEE R E A L K S 2 0 1 0 0 0 1 4 0 1 1 1 0 1 1 1 3 0 0 0 0 0 17 0 1619.8155 P07199 P07199 386 402 CENPB Major centromere autoantigen B yes yes 2 6.2412E-19 162.67 4 2 0.76971 1.1172 8.4178 6 Median 0.85342 1.0705 9.9423 4 0 Median 0.70627 1.1182 1.9559 2 0 Median 119510000 66677000 52836000 52993000 28351000 24641000 66521000 38326000 28195000 2224 1239 2279 8136;8137;8138;8139;8140;8141 12285;12286;12287;12288;12289;12290;12291;12292;12293;12294;12295 12286 11 EAGFLRPVTIFGPIADVAR PVQTKFPAYERVVLREAGFLRPVTIFGPIA LRPVTIFGPIADVAREKLAREEPDIYQIAK R E A A R E 3 2 0 1 0 0 1 2 0 2 1 0 0 2 2 0 1 0 0 2 0 0 19 1 2028.1156 A0A087X0K9;Q6MZU1;G5E9E7;A9CQZ8;G3V1L9;Q07157;Q68DX9 A0A087X0K9 628 646 TJP1;DKFZp686A1195;DKFZp686M05161 Tight junction protein ZO-1 yes no 3 4.0498E-17 139.46 3 0.70308 0.91206 11.454 3 Median 0.70308 0.91206 11.454 3 0 Median NaN NaN NaN 0 0 Median 12374000 8004000 4369600 12374000 8004000 4369600 0 0 0 2225 371 2280 8142;8143;8144 12296;12297;12298 12297 2 EAGGNYTPALTEQEVYAQVAR LEILHTYQKEQRNAKEAGGNYTPALTEQEV TPALTEQEVYAQVARLFKNQEDLLSEFGQF K E A A R L 4 1 1 0 0 2 3 2 0 0 1 0 0 0 1 0 2 0 2 2 0 0 21 0 2266.0866 Q96ST3 Q96ST3 344 364 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 1.1234E-38 172.85 4 0.74462 1.0502 32.035 4 Median 0.74462 1.0502 32.035 4 0 Median NaN NaN NaN 0 0 Median 14338000 7951500 6386500 14338000 7951500 6386500 0 0 0 2226 1701 2281 8145;8146;8147;8148 12299;12300;12301;12302;12303 12300 5 EAGLSNAAFESDFK NALLPTLRKQYCTLKEAGLSNAAFESDFKE KEAGLSNAAFESDFKEIEHLVERKKVVVWA K E A F K E 3 0 1 1 0 0 2 1 0 0 1 1 0 2 0 2 0 0 0 0 0 0 14 0 1484.6783 B2R6H3;Q8NI77;Q4G194 B2R6H3 589 602 KIF18A Kinesin-like protein;Kinesin-like protein KIF18A yes no 2 9.493E-05 108.9 4 0.66752 0.87883 23.389 3 Median 0.66752 0.87883 23.389 3 0 Median NaN NaN NaN 0 0 Median 13468000 8051500 5416500 13468000 8051500 5416500 0 0 0 2227 699 2282 8149;8150;8151;8152 12304;12305;12306;12307 12304 3 EAGNINQSLMTLR SERTNRTRAEGNRLREAGNINQSLMTLRTC LREAGNINQSLMTLRTCMDVLRENQMYGTN R E A L R T 1 1 2 0 0 1 1 1 0 1 2 0 1 0 0 1 1 0 0 0 0 0 13 0 1445.7297 H7BYN4;Q02241;H0YKQ5 H7BYN4 356 368 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 0.00031093 65.232 1 0.84748 1.173 NaN 1 Median NaN NaN NaN 0 0 Median 0.84748 1.173 NaN 1 0 Median 10810000 5156300 5654000 0 0 0 10810000 5156300 5654000 2228 1117 2283 8153 12308 12308 398 1 EAGNINTSLHTLGR GSERCKDQKSGERLKEAGNINTSLHTLGRC KEAGNINTSLHTLGRCIAALRQNQQNRSKQ K E A G R C 1 1 2 0 0 0 1 2 1 1 2 0 0 0 0 1 2 0 0 0 0 0 14 0 1481.7587 O95235 O95235 426 439 KIF20A Kinesin-like protein KIF20A yes yes 2;3 3.0175E-44 215.77 7 4 0.765 1.0191 21.024 9 Median 0.81423 1.1077 7.8832 6 0 Median 0.4695 0.74701 5.9454 3 0 Median 230300000 145980000 84314000 104740000 55022000 49718000 125560000 90960000 34595000 2229 1215 2284 8154;8155;8156;8157;8158;8159;8160;8161;8162;8163;8164 12309;12310;12311;12312;12313;12314;12315;12316;12317;12318;12319;12320;12321;12322;12323;12324;12325;12326;12327;12328;12329;12330 12313 22 EAHEPLAVADAK KINKQLKKVLKKIVKEAHEPLAVADAKLGG IVKEAHEPLAVADAKLGGVIKEKLNLSCIH K E A A K L 4 0 0 1 0 0 2 0 1 0 1 1 0 0 1 0 0 0 0 1 0 0 12 0 1249.6303 Q9Y2X3;B3KN82;B4DUY3 Q9Y2X3 82 93 NOP58 Nucleolar protein 58 yes no 2;3 9.0739E-55 202.96 7 4 0.66427 0.91301 13.016 10 Median 0.72294 0.92017 10.894 6 0 Median 0.55006 0.86737 16.568 4 0 Median 673900000 426390000 247500000 467580000 292940000 174640000 206320000 133460000 72864000 2230 1810 2285 8165;8166;8167;8168;8169;8170;8171;8172;8173;8174;8175 12331;12332;12333;12334;12335;12336;12337;12338;12339;12340;12341;12342;12343;12344;12345 12334 15 EAHLLALHIESSSR AWSPLAGEKFVEVYKEAHLLALHIESSSRN KEAHLLALHIESSSRNQAAQAAKPEDPRSQ K E A S R N 2 1 0 0 0 0 2 0 2 1 3 0 0 0 0 3 0 0 0 0 0 0 14 0 1561.8213 B4DZT6;Q9NYZ3 B4DZT6 64 77 GTSE1 G2 and S phase-expressed protein 1 yes no 3 0.0026855 47.545 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5977600 5977600 0 5977600 5977600 0 0 0 0 2231 881 2286 8176 12346 12346 1 EAHQLFLEPEVLDPESVELK LDPNKYPVPENWLHKEAHQLFLEPEVLDPE FLEPEVLDPESVELKWSEPNEEELIKFMCG K E A L K W 1 0 0 1 0 1 5 0 1 0 4 1 0 1 2 1 0 0 0 2 0 0 20 0 2321.1791 B4DWZ4;Q6FHX6;P39748;I3L3E9 B4DWZ4 242 261 FEN1 Flap endonuclease 1 yes no 3 1.0898E-11 120.9 3 0.48759 0.61433 15.226 2 Median 0.48759 0.61433 15.226 2 0 Median NaN NaN NaN 0 0 Median 33037000 19801000 13236000 33037000 19801000 13236000 0 0 0 2232 867 2287 8177;8178;8179 12347;12348;12349;12350;12351;12352 12348 6 EAIAELEREK EIQRQQSDHDAERLREAIAELEREKEKLQQ AERLREAIAELEREKEKLQQEAKLLQLKSE R E A E K E 2 1 0 0 0 0 4 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 10 1 1186.6194 Q15149 Q15149 2587 2596 PLEC Plectin yes yes 2 0.02173 81.525 1 0.92329 1.2376 NaN 1 Median 0.92329 1.2376 NaN 1 0 Median NaN NaN NaN 0 0 Median 7558400 3530300 4028100 7558400 3530300 4028100 0 0 0 2233 1507 2288 8180 12353 12353 1 EAIDSPVSFLALHNQIR HQTGLKVVRLCAKSREAIDSPVSFLALHNQ IDSPVSFLALHNQIRNMDSMPELQKLQQLK R E A I R N 2 1 1 1 0 1 1 0 1 2 2 0 0 1 1 2 0 0 0 1 0 0 17 0 1909.0058 A0A024R7L5;A0A024R7L8;Q92900 A0A024R7L5 550 566 UPF1 Regulator of nonsense transcripts 1 yes no 3 7.7562E-05 59.513 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11348000 0 11348000 0 0 0 11348000 0 11348000 2234 180 2289 8181;8182 12354;12355 12355 2 EAIEGTYIDK PRYYKNIGLGFKTPKEAIEGTYIDKKCPFT FKTPKEAIEGTYIDKKCPFTGNVSIRGRIL K E A D K K 1 0 0 1 0 0 2 1 0 2 0 1 0 0 0 0 1 0 1 0 0 0 10 0 1137.5554 P62280;M0QZC5 P62280 49 58 RPS11 40S ribosomal protein S11 yes no 2 3.3212E-06 123.86 5 0.77793 1.0282 8.2091 3 Plateau 0.77793 1.0282 8.2091 3 0 Plateau NaN NaN NaN 0 0 Median 1039700000 582100000 457560000 1039700000 582100000 457560000 0 0 0 2235 1404 2290 8183;8184;8185;8186;8187 12356;12357;12358;12359;12360;12361;12362 12361 7 EAIEGTYIDKK PRYYKNIGLGFKTPKEAIEGTYIDKKCPFT KTPKEAIEGTYIDKKCPFTGNVSIRGRILS K E A K K C 1 0 0 1 0 0 2 1 0 2 0 2 0 0 0 0 1 0 1 0 0 0 11 1 1265.6503 P62280;M0QZC5 P62280 49 59 RPS11 40S ribosomal protein S11 yes no 2 1.8469E-10 171.33 4 0.83021 1.0167 3.5343 4 Median 0.83021 1.0167 3.5343 4 0 Median NaN NaN NaN 0 0 Median 300040000 160910000 139130000 300040000 160910000 139130000 0 0 0 2236 1404 2291 8188;8189;8190;8191 12363;12364;12365;12366;12367;12368;12369;12370 12365 8 EAIETQLAEYHK QQKLWNEELKYARGKEAIETQLAEYHKLAR RGKEAIETQLAEYHKLARKLKLIPKGAENS K E A H K L 2 0 0 0 0 1 3 0 1 1 1 1 0 0 0 0 1 0 1 0 0 0 12 0 1430.7042 A8K031;O14777;Q05DQ6 A8K031 406 417 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 0.00025104 84.31 2 0.54215 0.71407 NaN 1 Median 0.54215 0.71407 NaN 1 0 Median NaN NaN NaN 0 0 Median 5308600 3477700 1830900 5308600 3477700 1830900 0 0 0 2237 574 2292 8192;8193 12371;12372 12372 2 EAIIVGSIITK GILIPLCESGTCTLREAIIVGSIITKCSIP CTLREAIIVGSIITKCSIPVLHSSAAMLKI R E A T K C 1 0 0 0 0 0 1 1 0 4 0 1 0 0 0 1 1 0 0 1 0 0 11 0 1142.6911 Q13895 Q13895 304 314 BYSL Bystin yes yes 2 0.00013446 89.047 2 0.90659 1.14 6.0185 2 Median 0.90659 1.14 6.0185 2 0 Median NaN NaN NaN 0 0 Median 32313000 15959000 16354000 32313000 15959000 16354000 0 0 0 2238 1480 2293 8194;8195 12373;12374 12373 2 EAINVEQAFQTIAR CYSKNNIPYFETSAKEAINVEQAFQTIARN KEAINVEQAFQTIARNALKQETEVELYNEF K E A A R N 3 1 1 0 0 2 2 0 0 2 0 0 0 1 0 0 1 0 0 1 0 0 14 0 1588.8209 A0A158RFU6;P51149;C9J4S4;C9J4V0;C9J8S3 A0A158RFU6 158 171 RAB7A Ras-related protein Rab-7a yes no 2 4.3905E-05 77.124 1 2 4.1451 6.4087 133.27 3 Median 0.54798 0.7358 NaN 1 0 Median 4.7469 7.3164 18.734 2 0 Median 57932000 18440000 39492000 14564000 10628000 3936100 43367000 7811500 35556000 2239 515 2294 8196;8197;8198 12375;12376;12377 12377 2 EAIQCVDNNQSVLVSAHTSAGK KAAKEYPFILDAFQREAIQCVDNNQSVLVS NNQSVLVSAHTSAGKTVCAEYAIALALREK R E A G K T 3 0 2 1 1 2 1 1 1 1 1 1 0 0 0 3 1 0 0 3 0 0 22 0 2327.1176 P42285;B4E3M6 P42285 146 167 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 3 2.1802E-19 127.67 4 0.6746 0.86945 8.161 4 Median 0.6746 0.86945 8.161 4 0 Median NaN NaN NaN 0 0 Median 55297000 34453000 20845000 55297000 34453000 20845000 0 0 0 2240 1336 2295 8199;8200;8201;8202 12378;12379;12380;12381;12382;12383;12384;12385;12386 12379 9 EAISDAALEATENEPLNK IKTSIEVKATENCAKEAISDAALEATENEP SDAALEATENEPLNKETEEMCVMLVSNLPN K E A N K E 4 0 2 1 0 0 4 0 0 1 2 1 0 0 1 1 1 0 0 0 0 0 18 0 1913.9218 Q14966;D6W5H1;A8K583;B4E187 Q14966 882 899 ZNF638 Zinc finger protein 638 yes no 2 0.00017119 86.738 2 0.6361 0.7991 61.498 2 Median 0.6361 0.7991 61.498 2 0 Median NaN NaN NaN 0 0 Median 4498800 2857500 1641300 4498800 2857500 1641300 0 0 0 2241 1498 2296 8203;8204 12387;12388 12387 1 EAITHLLGVALTR LENPTINHQKNRPTREAITHLLGVALTRYN TREAITHLLGVALTRYNHMLSATVKIIQML R E A T R Y 2 1 0 0 0 0 1 1 1 1 3 0 0 0 0 0 2 0 0 1 0 0 13 0 1392.8089 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00;A0PJ76 B3KMS0 221 233 NCAPD2 Condensin complex subunit 1 yes no 2;3 3.7417E-12 154.15 7 4 0.66672 0.89523 8.5434 10 Median 0.66949 0.90713 2.9552 7 0 Median 0.47896 0.78098 1.4454 3 0 Median 452690000 297340000 155350000 108410000 61825000 46587000 344280000 235520000 108760000 2242 757 2297 8205;8206;8207;8208;8209;8210;8211;8212;8213;8214;8215 12389;12390;12391;12392;12393;12394;12395;12396;12397;12398;12399;12400;12401;12402;12403;12404;12405;12406;12407 12395 19 EAIVAALLTR RQEFIRIRPNREGDREAIVAALLTRTFTDH REGDREAIVAALLTRTFTDHVMLFTQTKKQ R E A T R T 3 1 0 0 0 0 1 0 0 1 2 0 0 0 0 0 1 0 0 1 0 0 10 0 1055.6339 B7Z6D5;B3GQE6;Q96GQ7;Q53G15 B7Z6D5 420 429 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 0.00063865 98.044 3 2 0.77643 1.0271 17.029 5 Median 0.84252 1.1574 7.3812 3 0 Median 0.5498 0.83304 3.5236 2 0 Median 64559000 37769000 26790000 26755000 14658000 12097000 37804000 23112000 14693000 2243 750 2298 8216;8217;8218;8219;8220 12408;12409;12410;12411;12412;12413;12414;12415;12416 12416 9 EAIVTSEELGQDLEHVEVLQK YLRECEDVMDWINDKEAIVTSEELGQDLEH EELGQDLEHVEVLQKKFEEFQTDMAAHEER K E A Q K K 1 0 0 1 0 2 5 1 1 1 3 1 0 0 0 1 1 0 0 3 0 0 21 0 2365.2013 Q13813;A0A0D9SGF6;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 169 189 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 3 2.9847E-59 194.27 2 0.95288 1.1871 13.367 2 Median 0.95288 1.1871 13.367 2 0 Median NaN NaN NaN 0 0 Median 47869000 26347000 21521000 47869000 26347000 21521000 0 0 0 2244 1476 2299 8221;8222 12417;12418;12419;12420;12421 12417 5 EAIYNDVLTK ALSRQASQELDVKRREAIYNDVLTKQQMLI DVKRREAIYNDVLTKQQMLISCVQRILMNR R E A T K Q 1 0 1 1 0 0 1 0 0 1 1 1 0 0 0 0 1 0 1 1 0 0 10 0 1164.6027 A4LAA3;P46100;B4DHH8;B4DLE1;B4DLW1 A4LAA3 2388 2397 ATRX Transcriptional regulator ATRX yes no 2 1.2231E-05 100.25 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4420300 4420300 0 4420300 4420300 0 0 0 0 2245 556 2300 8223;8224 12422;12423 12423 2 EAIYSGYIR LVLSKEDFEKKEKNKEAIYSGYIRNRKPSD KKEKNKEAIYSGYIRNRKPSDSVHITNDDE K E A I R N 1 1 0 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 2 0 0 0 9 0 1070.5397 A6NHR9 A6NHR9 280 288 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.0025563 107.29 2 0.78242 1.1078 6.2422 2 Median 0.78242 1.1078 6.2422 2 0 Median NaN NaN NaN 0 0 Median 6484300 3770000 2714300 6484300 3770000 2714300 0 0 0 2246 568 2301 8225;8226 12424;12425 12425 2 EALAFIIR LFEGLKFFLNREVPREALAFIIRSFGGEVS LNREVPREALAFIIRSFGGEVSWDKSLCIG R E A I R S 2 1 0 0 0 0 1 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0 8 0 931.5491 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6 B5MCF9 324 331 PES1 Pescadillo homolog yes no 2 0.0015173 155.73 4 2 0.83229 1.1353 9.1753 6 Median 0.86371 1.1719 6.3015 4 0 Median 0.64961 1.0249 0.78766 2 0 Median 227070000 127590000 99473000 164970000 90061000 74911000 62093000 37531000 24562000 2247 735 2302 8227;8228;8229;8230;8231;8232 12426;12427;12428;12429;12430;12431;12432;12433;12434;12435;12436;12437 12435 12 EALALQGSLEFDDAGGEGVTSHVDDEYR LPCDENRLIPTELRREALALQGSLEFDDAG AGGEGVTSHVDDEYRWAGVEDPKVMITTSR R E A Y R W 3 1 0 4 0 1 4 4 1 0 3 0 0 1 0 2 1 0 1 2 0 0 28 0 2979.337 H0Y714;Q96G21;B8ZZ47 H0Y714 38 65 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 3 1.0814E-58 166.91 4 0.89542 1.2072 4.3006 4 Median 0.89542 1.2072 4.3006 4 0 Median NaN NaN NaN 0 0 Median 71002000 38501000 32501000 71002000 38501000 32501000 0 0 0 2248 1094 2303 8233;8234;8235;8236 12438;12439;12440;12441;12442;12443;12444;12445;12446;12447 12442 10 EALCGCTVNVPTLDGR RDGSDVIYPARISLREALCGCTVNVPTLDG ALCGCTVNVPTLDGRTIPVVFKDVIRPGMR R E A G R T 1 1 1 1 2 0 1 2 0 0 2 0 0 0 1 0 2 0 0 2 0 0 16 0 1760.8186 Q6FI51;Q6FHS4;P25685;M0R080 Q6FI51 264 279 DNAJB1 DnaJ homolog subfamily B member 1 yes no 2 5.9206E-05 62.924 2 0.73052 1.0205 NaN 1 Median 0.73052 1.0205 NaN 1 0 Median NaN NaN NaN 0 0 Median 10097000 7776900 2319800 10097000 7776900 2319800 0 0 0 2249 1297 2304 8237;8238 12448;12449;12450 12449 3 EALDIHAVDGTTEESSSLQASTTNDSGYR LEDVDGVLFVSFESKEALDIHAVDGTTEES SSSLQASTTNDSGYRARISQLEKELIEDLK K E A Y R A 3 1 1 3 0 1 3 2 1 1 2 0 0 0 0 5 4 0 1 1 0 0 29 0 3053.3698 B9EGR5;Q8IWI9;H3BP52;H3BTF4;Q9H6M4 B9EGR5 672 700 MGA MAX gene-associated protein yes no 3 5.8361E-08 82.627 1 1 0.90225 1.2032 4.4836 2 Median 0.83336 1.1656 NaN 1 0 Median 0.97684 1.2419 NaN 1 0 Median 6076100 2690700 3385400 2182400 904880 1277500 3893700 1785900 2107900 2250 930 2305 8239;8240 12451;12452;12453 12451 3 EALDVLGAVLK MEKVAASPEDIKLCREALDVLGAVLKALTS KLCREALDVLGAVLKALTSADGASEEQSQN R E A L K A 2 0 0 1 0 0 1 1 0 0 3 1 0 0 0 0 0 0 0 2 0 0 11 0 1126.6598 Q6PKB3;G5EA06;B4DT94;A0A024RAJ1;Q92552;Q8N6F2;B4DKI9;D6RH20 Q6PKB3 86 96 MRPS27 28S ribosomal protein S27, mitochondrial yes no 2 4.711E-05 113.18 2 1 0.4567 0.59262 7.684 2 Median 0.4567 0.59262 7.684 2 0 Median NaN NaN NaN 0 0 Median 11612000 5102600 6509700 8111100 5102600 3008400 3501300 0 3501300 2251 244 2306 8241;8242;8243 12454;12455;12456;12457;12458 12457 5 EALEALVPVTIEVEVPFDLHR IIIISGRKEKCEAAKEALEALVPVTIEVEV VPVTIEVEVPFDLHRYVIGQKGSGIRKMMD K E A H R Y 2 1 0 1 0 0 4 0 1 1 3 0 0 1 2 0 1 0 0 4 0 0 21 0 2375.2737 B2R5V9;A0A024R4E5;Q00341;Q6ZS03;Q96CF6;H0Y394;B4DKR8;Q2HJC8 B2R5V9 965 985 HDLBP Vigilin yes no 3 0.04739 47.726 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1940900 1940900 0 1940900 1940900 0 0 0 0 2252 122 2307 8244 12459 12459 1 EALELTDTGLLSGSEER FGRLKDDREKCAKAKEALELTDTGLLSGSE LELTDTGLLSGSEERVQVALEELQDLKGVW K E A E R V 1 1 0 1 0 0 4 2 0 0 4 0 0 0 0 2 2 0 0 0 0 0 17 0 1818.8847 Q14204 Q14204 1302 1318 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 6.9864E-09 162.93 3 0.62245 0.85317 NaN 1 Median 0.62245 0.85317 NaN 1 0 Median NaN NaN NaN 0 0 Median 4453200 2199200 2254000 4453200 2199200 2254000 0 0 0 2253 1483 2308 8245;8246;8247 12460;12461;12462;12463;12464 12463 5 EALENANTNTEVLK LAQIDGTLSTIEFQREALENANTNTEVLKN REALENANTNTEVLKNMGYAAKAMKAAHDN R E A L K N 2 0 3 0 0 0 3 0 0 0 2 1 0 0 0 0 2 0 0 1 0 0 14 0 1544.7682 Q9H444 Q9H444 94 107 CHMP4B Charged multivesicular body protein 4b yes yes 2 5.2123E-13 152.54 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6196800 6196800 0 6196800 6196800 0 0 0 0 2254 1732 2309 8248;8249;8250;8251 12465;12466;12467;12468 12465 4 EALENCITLQDFNR ELKMAEIKVKLIEAKEALENCITLQDFNRA KEALENCITLQDFNRASELKEEIKALEDAR K E A N R A 1 1 2 1 1 1 2 0 0 1 2 0 0 1 0 0 1 0 0 0 0 0 14 0 1721.8043 H0Y9Z8;Q9BPX3;Q6NUR1 Q9BPX3 504 517 NCAPG Condensin complex subunit 3 no no 2 9.0193E-74 253.71 3 2 0.66926 0.91918 22.478 5 Median 0.69353 0.94423 2.7826 3 0 Median 0.38668 0.6278 0.69087 2 0 Median 372430000 240040000 132390000 242690000 145100000 97585000 129740000 94938000 34802000 2255 1706;1096 2310 8252;8253;8254;8255;8256 12469;12470;12471;12472;12473;12474;12475;12476;12477;12478;12479 12470 11 EALEPSGENVIQNK YSDIRTGRESSLPSKEALEPSGENVIQNKE KEALEPSGENVIQNKESTG___________ K E A N K E 1 0 2 0 0 1 3 1 0 1 1 1 0 0 1 1 0 0 0 1 0 0 14 0 1526.7577 B2RDK6;D3DR65;O75477 B2RDK6 329 342 SPFH1;ERLIN1 Erlin-1 yes no 2 4.0523E-13 155 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1198900 1198900 0 1198900 1198900 0 0 0 0 2256 736 2311 8257 12480 12480 1 EALEVAVAGTELFR YKQLSVSLLCYNFLREALEVAVAGTELFRD REALEVAVAGTELFRDSGTMWQLKLQVLIE R E A F R D 3 1 0 0 0 0 3 1 0 0 2 0 0 1 0 0 1 0 0 2 0 0 14 0 1503.7933 B3KQ21;Q9NYH9;B3KX32 B3KQ21 387 400 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 4.7266E-27 183.99 4 2 0.95008 1.2979 12.049 6 Median 0.9745 1.3131 1.3659 4 0 Median 0.69215 1.0672 12.865 2 0 Median 155530000 86179000 69349000 106210000 56084000 50121000 49323000 30095000 19228000 2257 768 2312 8258;8259;8260;8261;8262;8263 12481;12482;12483;12484;12485;12486;12487;12488;12489 12483 9 EALGGQALYPHVLVK TKNGKWMGIAFRIQKEALGGQALYPHVLVK EALGGQALYPHVLVKNCAVEFNFGQRAEPY K E A V K N 2 0 0 0 0 1 1 2 1 0 3 1 0 0 1 0 0 0 1 2 0 0 15 0 1593.8879 M0R3F1;A8K3W4;A0A024R0J9;A0A0A0MRA5;B7Z4B8;A8K6U7;Q9BUJ2;A8K5K0;M0QYZ0 M0R3F1 210 224 HNRNPUL1;HNRPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 2;3 1.1061E-05 104.81 4 0.4948 0.61416 29.862 3 Median 0.4948 0.61416 29.862 3 0 Median NaN NaN NaN 0 0 Median 30041000 19056000 10985000 30041000 19056000 10985000 0 0 0 2258 39 2313 8264;8265;8266;8267 12490;12491;12492;12493;12494 12491 5 EALGIPAAASFK LCDALNAWQLVKELKEALGIPAAASFKHVS ELKEALGIPAAASFKHVSPAGAAVGIPLSE K E A F K H 4 0 0 0 0 0 1 1 0 1 1 1 0 1 1 1 0 0 0 0 0 0 12 0 1173.6394 B4DP06;V9HWH7;B2R7P8;P31939 B4DP06 196 207 HEL-S-70p;ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 0.044014 60.064 1 0.4878 0.63764 NaN 1 Median 0.4878 0.63764 NaN 1 0 Median NaN NaN NaN 0 0 Median 2342000 1548900 793160 2342000 1548900 793160 0 0 0 2259 707 2314 8268 12495 12495 1 EALIAASETLK LSRHNTAVSQLTKAKEALIAASETLKERKA TKAKEALIAASETLKERKAAIRDIEGKLPQ K E A L K E 3 0 0 0 0 0 2 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 11 0 1144.634 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 525 535 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.00019287 125.97 2 0.10562 0.13768 NaN 1 Median 0.10562 0.13768 NaN 1 0 Median NaN NaN NaN 0 0 Median 54755000 48213000 6542600 54755000 48213000 6542600 0 0 0 2260 1760 2315 8269;8270 12496;12497 12496 2 EALIEIDYGDLCEDLK DSVSGSQRISSIYAREALIEIDYGDLCEDL ALIEIDYGDLCEDLKDAQAEEEIKQEMNTL R E A L K D 1 0 0 3 1 0 3 1 0 2 3 1 0 0 0 0 0 0 1 0 0 0 16 0 1894.887 Q14683;G8JLG1;V9GY57 Q14683 976 991 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 3.9E-15 153.38 4 0.67895 0.87844 NaN 1 Median 0.67895 0.87844 NaN 1 0 Median NaN NaN NaN 0 0 Median 8449400 5803200 2646200 8449400 5803200 2646200 0 0 0 2261 1492 2316 8271;8272;8273;8274 12498;12499;12500;12501;12502 12498 4 EALLELLR TLVQRYKADLATDQKEALLELLRLQPHPQL DLATDQKEALLELLRLQPHPQLSPEIRREL K E A L R L 1 1 0 0 0 0 2 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 8 0 955.57023 Q13895 Q13895 399 406 BYSL Bystin yes yes 2 0.0036454 108.09 4 2 0.81017 1.112 9.2933 6 Median 0.83263 1.112 9.3389 4 0 Median 0.70661 1.0696 11.596 2 0 Median 97687000 52973000 44714000 62251000 33559000 28692000 35436000 19414000 16022000 2262 1480 2317 8275;8276;8277;8278;8279;8280 12503;12504;12505;12506;12507;12508;12509;12510;12511;12512 12506 10 EALLGVQEDVDEYVK ELHYPLGERRSDYDREALLGVQEDVDEYVK EALLGVQEDVDEYVKLGHEEQQKRLQAIIK R E A V K L 1 0 0 2 0 1 3 1 0 0 2 1 0 0 0 0 0 0 1 3 0 0 15 0 1705.841 Q14257;H0YL43 Q14257 42 56 RCN2 Reticulocalbin-2 yes no 2 6.6443E-06 102.33 2 2 1.6933 2.3442 36.216 4 Median 1.3775 1.7624 40.738 2 0 Median 1.7933 2.7076 20.771 2 0 Median 55718000 18946000 36772000 17287000 5970100 11317000 38431000 12976000 25455000 2263 1484 2318 8281;8282;8283;8284 12513;12514;12515;12516 12514 3 EALLSSAVDHGSDEVK QTIIAGWREATKAAREALLSSAVDHGSDEV ALLSSAVDHGSDEVKFRQDLMNIAGTTLSS R E A V K F 2 0 0 2 0 0 2 1 1 0 2 1 0 0 0 3 0 0 0 2 0 0 16 0 1655.8002 V9HW96;P78371;F5GWF6;F8VQ14 V9HW96 139 154 HEL-S-100n;CCT2 T-complex protein 1 subunit beta yes no 2 9.42E-99 255.24 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8548700 8548700 0 8548700 8548700 0 0 0 0 2264 1426 2319 8285;8286;8287;8288 12517;12518;12519;12520 12518 4 EALNSLSQLSYSTSSSK DKKINEMSKEVTKLKEALNSLSQLSYSTSS LNSLSQLSYSTSSSKRQSQQLEALQQQVKQ K E A S K R 1 0 1 0 0 1 1 0 0 0 3 1 0 0 0 7 1 0 1 0 0 0 17 0 1800.8741 Q9P0K7;B3KMZ9 Q9P0K7 896 912 RAI14 Ankycorbin yes no 2 1.0876E-15 157.33 4 1.222 1.5568 NaN 1 Median 1.222 1.5568 NaN 1 0 Median NaN NaN NaN 0 0 Median 6240600 1887100 4353500 6240600 1887100 4353500 0 0 0 2265 1777 2320 8289;8290;8291;8292 12521;12522;12523;12524 12521 4 EALNVINTHTK LHCKVVCLIQNGSFKEALNVINTHTKVLAN GSFKEALNVINTHTKVLANNSLSFEKAYCE K E A T K V 1 0 2 0 0 0 1 0 1 1 1 1 0 0 0 0 2 0 0 1 0 0 11 0 1238.6619 V9HWK0;O76094;Q86X80;A0PJJ5;Q71V07;Q0D2M6;R4GNC1 V9HWK0 63 73 HEL103;SRP72 Signal recognition particle subunit SRP72 yes no 2 0.0039443 57.267 1 0.58838 0.74681 NaN 1 Median 0.58838 0.74681 NaN 1 0 Median NaN NaN NaN 0 0 Median 6949200 4602400 2346700 6949200 4602400 2346700 0 0 0 2266 1211 2321 8293 12525 12525 1 EALSFPHLHLR IGSFAEPSSVSFSSKEALSFPHLHLRGQRN FSSKEALSFPHLHLRGQRNDRDQHTDSTQS K E A L R G 1 1 0 0 0 0 1 0 2 0 3 0 0 1 1 1 0 0 0 0 0 0 11 0 1318.7146 Q03164 Q03164 2363 2373 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 3 0.018243 30.331 1 1 0.92093 1.2853 13.872 2 Median 0.89132 1.1652 NaN 1 0 Median 0.95151 1.4178 NaN 1 0 Median 14211000 6985900 7225600 7453400 3383600 4069800 6758100 3602300 3155800 2267 1438 2322 8294;8295 12526;12527;12528 12526 3 EAMNDPLLER AKTILKYMTDGMLLREAMNDPLLERYGVII GMLLREAMNDPLLERYGVIILDEAHERTLA R E A E R Y 1 1 1 1 0 0 2 0 0 0 2 0 1 0 1 0 0 0 0 0 0 0 10 0 1186.5652 O43143;B4E0S6 O43143 244 253 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 0.00084862 76.465 2 0.75987 1.1629 4.3015 2 Median NaN NaN NaN 0 0 Median 0.75987 1.1629 4.3015 2 0 Median 38944000 21568000 17376000 0 0 0 38944000 21568000 17376000 2268 1180 2323 8296;8297 12529;12530;12531;12532 12532 427 4 EAMVQAEEAAAEITR YETGEIPRKNLDVMKEAMVQAEEAAAEITR EAMVQAEEAAAEITRKLEKQEKKRLKKEKK K E A T R K 5 1 0 0 0 1 4 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 15 0 1617.7668 A8K9K6;O00567;A0PJ92;H0YDU4;H0Y653;Q9BSN3 A8K9K6 423 437 NOP56 Nucleolar protein 56 yes no 2 2.97E-15 134.49 11 5 0.57229 0.8231 14.608 12 Median 0.72378 0.96263 14.816 7 0 Median 0.49637 0.8194 10.187 5 0 Median 498990000 332860000 166130000 45220000 27849000 17371000 453770000 305020000 148760000 2269 647 2324;2325 8298;8299;8300;8301;8302;8303;8304;8305;8306;8307;8308;8309;8310;8311;8312;8313 12533;12534;12535;12536;12537;12538;12539;12540;12541;12542;12543;12544;12545;12546;12547;12548;12549;12550;12551;12552;12553;12554;12555 12541 222 22 EANEILQR KREDLVVAPAGITLKEANEILQRSKKGKLP PAGITLKEANEILQRSKKGKLPIVNEDDEL K E A Q R S 1 1 1 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 971.50361 B4DNJ7;B3KRZ3;Q6ZNB1;Q5H9Q6;P20839;A0A024R725;C9J381;C9K0R9;P12268;H0Y4R1;B7Z1G4;Q6QE17;E7ETK5 P12268 196 203 IMPDH;DKFZp781N0678;IMPDH1;IMPDH2 Inosine-5-monophosphate dehydrogenase;Inosine-5-monophosphate dehydrogenase 1;Inosine-5-monophosphate dehydrogenase 2 no no 2 0.00015312 173.59 3 1 0.33993 0.4603 136.01 4 Median 0.33281 0.4489 3.5157 3 0 Median 4.3993 6.8863 NaN 1 0 Median 136100000 87148000 48950000 113060000 83193000 29872000 23033000 3955100 19078000 2270 1261;772 2326 8314;8315;8316;8317 12556;12557;12558;12559;12560;12561 12559 6 EANNFLWPFK EDLIHEIYTVGKRFKEANNFLWPFKLSSPR GKRFKEANNFLWPFKLSSPRGGMKKKTTHF K E A F K L 1 0 2 0 0 0 1 0 0 0 1 1 0 2 1 0 0 1 0 0 0 0 10 0 1264.6241 A0A024R814;P18124;A8MUD9;O95036 A0A024R814 214 223 RPL7;WUGSC:H_RG054D04.1 60S ribosomal protein L7 yes no 2 0.0053115 61.962 2 0.6788 1.0755 3.3868 2 Median NaN NaN NaN 0 0 Median 0.6788 1.0755 3.3868 2 0 Median 74002000 44146000 29856000 0 0 0 74002000 44146000 29856000 2271 189 2327 8318;8319 12562;12563 12562 2 EAPEELLAYEGVR HCHEAQAVLGVLLRREAPEELLAYEGVRAA RREAPEELLAYEGVRAALEALLPYTERHFQ R E A V R A 2 1 0 0 0 0 4 1 0 0 2 0 0 0 1 0 0 0 1 1 0 0 13 0 1474.7304 Q12788;J3KNP2;A0JLS5 Q12788 742 754 TBL3 Transducin beta-like protein 3 yes no 2 2.551E-08 103.34 2 0.93812 1.2576 NaN 1 Median 0.93812 1.2576 NaN 1 0 Median NaN NaN NaN 0 0 Median 28167000 12577000 15591000 28167000 12577000 15591000 0 0 0 2272 1456 2328 8320;8321 12564;12565;12566;12567 12567 4 EAPNPIHLTVDTSLQNGR DITEHSVLIHEYYSREAPNPIHLTVDTSLQ NPIHLTVDTSLQNGRMSIKAYVSTLMGVPG R E A G R M 1 1 2 1 0 1 1 1 1 1 2 0 0 0 2 1 2 0 0 1 0 0 18 0 1960.9967 B4DMT5;B3KSH1;O00303;B4DEW9 B4DMT5 143 160 EIF3F Eukaryotic translation initiation factor 3 subunit F yes no 3 0.00032907 48.907 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4379500 4379500 0 4379500 4379500 0 0 0 0 2273 775 2329 8322 12568 12568 1 EAPPMEKPEVVK RKQHSLLKRLRKAKKEAPPMEKPEVVKTHL AKKEAPPMEKPEVVKTHLRDMIILPEMVGS K E A V K T 1 0 0 0 0 0 3 0 0 0 0 2 1 0 3 0 0 0 0 2 0 0 12 1 1352.701 K7EM56;A0A0B4J2B4;S4R417;K7EQJ5;K7ELC2;P62841;S4R456;K7EJ78 K7EM56 33 44 RPS15 40S ribosomal protein S15 yes no 3 0.014575 27.33 1 0.96212 1.1785 NaN 1 Median 0.96212 1.1785 NaN 1 0 Median NaN NaN NaN 0 0 Median 27929000 14781000 13147000 27929000 14781000 13147000 0 0 0 2274 418 2330 8323 12569 12569 1 EAQAVPATLPELEATK QGAEEVLRAHEEQLKEAQAVPATLPELEAT AQAVPATLPELEATKASLKKLRAQAEAQQP K E A T K A 4 0 0 0 0 1 3 0 0 0 2 1 0 0 2 0 2 0 0 1 0 0 16 0 1666.8778 Q15149 Q15149 1251 1266 PLEC Plectin yes yes 2 6.2364E-13 132.03 4 0.93203 1.1506 4.4341 4 Median 0.93203 1.1506 4.4341 4 0 Median NaN NaN NaN 0 0 Median 81417000 39830000 41587000 81417000 39830000 41587000 0 0 0 2275 1507 2331 8324;8325;8326;8327 12570;12571;12572;12573;12574;12575;12576;12577;12578;12579 12577 10 EAQDIILQLR KMLVLALENEKSKVKEAQDIILQLRKECYY KSKVKEAQDIILQLRKECYYLTCQLYALKG K E A L R K 1 1 0 1 0 2 1 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1197.6717 B5BUA4;Q5FBB7;A0A024R2J4 B5BUA4 77 86 SGOL1 Shugoshin-like 1 yes no 2 0.0015824 64.711 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2276 895 2332 8328 12580 12580 1 EAQELSQNSAIK SGHQGRTIIFCETKKEAQELSQNSAIKQDA TKKEAQELSQNSAIKQDAQSLHGDIPQKQR K E A I K Q 2 0 1 0 0 2 2 0 0 1 1 1 0 0 0 2 0 0 0 0 0 0 12 0 1316.6572 Q9NR30 Q9NR30 450 461 DDX21 Nucleolar RNA helicase 2 yes yes 2 6.9666E-38 214.71 4 1 0.6562 0.8258 3.8608 5 Median 0.66011 0.84138 3.9636 4 0 Median 0.51239 0.80347 NaN 1 0 Median 219800000 137720000 82079000 182920000 113830000 69087000 36881000 23890000 12991000 2277 1756 2333 8329;8330;8331;8332;8333 12581;12582;12583;12584;12585;12586;12587;12588;12589;12590 12588 10 EAQLYAAQAHLK MLDLAKIIFKRQETKEAQLYAAQAHLKLGE ETKEAQLYAAQAHLKLGEVSVESENYVQAV K E A L K L 4 0 0 0 0 2 1 0 1 0 2 1 0 0 0 0 0 0 1 0 0 0 12 0 1341.7041 E9PRH9;H0YF33;O95138;Q9P1N1;Q5T624;Q5T626;B4DS57;Q53H03;P49321;E9PI86 E9PRH9 133 144 NASP Nuclear autoantigenic sperm protein yes no 2 0.036633 52.579 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3375200 3375200 0 3375200 3375200 0 0 0 0 2278 853 2334 8334 12591 12591 1 EAQQKVPDEEENEESDNEK LIQRGYDSDPVKAWKEAQQKVPDEEENEES KVPDEEENEESDNEKETEKSDSVTDSGPTF K E A E K E 1 0 2 2 0 2 7 0 0 0 0 2 0 0 1 1 0 0 0 1 0 0 19 1 2245.9459 P11388 P11388 1092 1110 TOP2A DNA topoisomerase 2-alpha yes yes 3 0.011237 55.267 2 1.0409 1.2571 35.241 2 Median 1.0409 1.2571 35.241 2 0 Median NaN NaN NaN 0 0 Median 4814600 2270000 2544600 4814600 2270000 2544600 0 0 0 2279 1256 2335 8335;8336 12592;12593 12593 1 EAQRDYLDFLDDEEDQGIYQSK ______________________________ DFLDDEEDQGIYQSKVRELISDNQYRLIVN R E A S K V 1 1 0 5 0 3 3 1 0 1 2 1 0 1 0 1 0 0 2 0 0 0 22 1 2676.1827 Q8NHX6;Q53HJ4;B2R7C5;A0A0S2Z4T1;A0A0S2Z492;P25205 Q8NHX6 14 35 HCC5;MCM3 DNA helicase;DNA replication licensing factor MCM3 yes no 3 0.00042735 59.547 4 0.38963 0.50205 9.3889 4 Median 0.38963 0.50205 9.3889 4 0 Median NaN NaN NaN 0 0 Median 30568000 21840000 8728000 30568000 21840000 8728000 0 0 0 2280 463 2336 8337;8338;8339;8340 12594;12595;12596;12597;12598;12599 12594 6 EAQTSFLHLGYLPNQLFR DILAPTVQELAALEKEAQTSFLHLGYLPNQ TSFLHLGYLPNQLFRTF_____________ K E A F R T 1 1 1 0 0 2 1 1 1 0 4 0 0 2 1 1 1 0 1 0 0 0 18 0 2133.1007 F1T0B3;A0A087X2G1;A3RJH1;Q92499 F1T0B3 640 657 DDX1 ATP-dependent RNA helicase DDX1 yes no 3 1.6707E-31 171.81 4 2 0.69256 0.93542 13.637 6 Median 0.76968 1.0416 10.191 4 0 Median 0.52827 0.81915 7.2116 2 0 Median 181640000 109470000 72165000 135970000 76198000 59771000 45668000 33274000 12394000 2281 378 2337 8341;8342;8343;8344;8345;8346 12600;12601;12602;12603;12604;12605;12606;12607;12608 12603 9 EASDLLEQNR ELTSLLEKELEQSQKEASDLLEQNRLLQDQ EQSQKEASDLLEQNRLLQDQLRVALGREQS K E A N R L 1 1 1 1 0 1 2 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1173.5626 B9EGI2;U6FSN9;Q6WCQ1;J3KSW8;H0Y2S9;Q8N236 B9EGI2 688 697 MPRIP;Mprip-Ntrk1 fusion gene Tyrosine-protein kinase receptor;Myosin phosphatase Rho-interacting protein yes no 2 0.041248 46.158 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2282 928 2338 8347;8348 12609;12610 12609 2 EASDPFSLNELLDELSRK KELVGEFLQFVQLDKEASDPFSLNELLDEL DPFSLNELLDELSRKQKEELWQRLKNLLTD K E A R K Q 1 1 1 2 0 0 3 0 0 0 4 1 0 1 1 3 0 0 0 0 0 0 18 1 2062.0219 Q86XI2;B3KRQ2;F8WE06 Q86XI2 28 45 NCAPG2 Condensin-2 complex subunit G2 yes no 3 0.028998 15.422 1 0.6896 0.90721 NaN 1 Median 0.6896 0.90721 NaN 1 0 Median NaN NaN NaN 0 0 Median 20594000 12872000 7721000 20594000 12872000 7721000 0 0 0 2283 1621 2339 8349 12611 12611 1 EASDPQPEEADGGLK DPRNKISFKFDHLRKEASDPQPEEADGGLK EASDPQPEEADGGLKSWRESCDSALRAYVK K E A L K S 2 0 0 2 0 1 3 2 0 0 1 1 0 0 2 1 0 0 0 0 0 0 15 0 1541.6845 A8K0T9;A0A024R0E5;P52907 A8K0T9 104 118 CAPZA1 F-actin-capping protein subunit alpha-1 yes no 2 6.1744E-10 140.14 3 1 0.99856 1.2642 39.523 4 Median 0.96346 1.2227 13.298 3 0 Median 1.7062 2.5097 NaN 1 0 Median 30043000 13747000 16295000 24250000 11514000 12736000 5792800 2233100 3559700 2284 32 2340 8350;8351;8352;8353 12612;12613;12614;12615;12616;12617;12618;12619 12613 8 EASELLR NVLDTSWPTPPPALREASELLRELCIKNMV PTPPPALREASELLRELCIKNMVWKYCRSI R E A L R E 1 1 0 0 0 0 2 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 7 0 816.43413 F5H6E2;B7Z3E5;O00159;D3DTH7 F5H6E2 818 824 MYO1C Unconventional myosin-Ic yes no 2 0.032825 60.648 1 0.72314 0.99459 NaN 1 Median 0.72314 0.99459 NaN 1 0 Median NaN NaN NaN 0 0 Median 10079000 5665000 4414100 10079000 5665000 4414100 0 0 0 2285 905 2341 8354 12620 12620 1 EASGDLPEAQIVK NLGVAVIHDYADWVKEASGDLPEAQIVKHW VKEASGDLPEAQIVKHWSLTWTLCEALWGH K E A V K H 2 0 0 1 0 1 2 1 0 1 1 1 0 0 1 1 0 0 0 1 0 0 13 0 1355.6933 P52948;H7C3P6;A0A024RCC4 P52948 1255 1267 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.02342 34.692 1 0.4483 0.57139 NaN 1 Median 0.4483 0.57139 NaN 1 0 Median NaN NaN NaN 0 0 Median 6596900 4444500 2152500 6596900 4444500 2152500 0 0 0 2286 1367 2342 8355 12621 12621 1 EASGETTGVDITK GNEVDSQSSIRTEAKEASGETTGVDITKIQ AKEASGETTGVDITKIQVKRCETMREKHMQ K E A T K I 1 0 0 1 0 0 2 2 0 1 0 1 0 0 0 1 3 0 0 1 0 0 13 0 1306.6252 B4DLG2;O75152;E9PQ61 B4DLG2 487 499 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 2 0.0049337 44.543 2 1.4133 1.8865 7.5781 2 Median NaN NaN NaN 0 0 Median 1.4133 1.8865 7.5781 2 0 Median 6578400 2787800 3790600 0 0 0 6578400 2787800 3790600 2287 826 2343 8356;8357 12622;12623;12624 12624 3 EASIYTGITLSEYFR TALVANTSNMPVAAREASIYTGITLSEYFR EASIYTGITLSEYFRDMGYHVSMMADSTSR R E A F R D 1 1 0 0 0 0 2 1 0 2 1 0 0 1 0 2 2 0 2 0 0 0 15 0 1748.8621 P38606;B7Z2V6 P38606 324 338 ATP6V1A V-type proton ATPase catalytic subunit A yes no 2 0.028076 48.004 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2059500 2059500 0 2059500 2059500 0 0 0 0 2288 1329 2344 8358 12625 12625 1 EASLQFVVEPSEATNR QKSHPKSVPVSSKKKEASLQFVVEPSEATN ASLQFVVEPSEATNRSVQAHEVHQKILATD K E A N R S 2 1 1 0 0 1 3 0 0 0 1 0 0 1 1 2 1 0 0 2 0 0 16 0 1775.869 Q03188;H0Y8J2 Q03188 94 109 CENPC Centromere protein C yes no 2 9.3147E-34 188.29 4 2 0.70984 0.98206 12.296 6 Median 0.80571 1.0731 14.456 4 0 Median 0.63789 0.98206 0.16944 2 0 Median 94258000 51214000 43043000 52144000 26579000 25565000 42114000 24636000 17478000 2289 1439 2345 8359;8360;8361;8362;8363;8364 12626;12627;12628;12629;12630;12631;12632;12633;12634;12635;12636 12626 11 EASSASQFEELEIVLK SLKAHVQEVAQHNLKEASSASQFEELEIVL ASSASQFEELEIVLKEKENELKRLEAMLKE K E A L K E 2 0 0 0 0 1 4 0 0 1 2 1 0 1 0 3 0 0 0 1 0 0 16 0 1778.8938 A0A024R663;Q86UP2;G3V4Y7 A0A024R663 921 936 KTN1 Kinectin yes no 2 0.00060399 50.222 1 0.40262 0.5546 NaN 1 Median NaN NaN NaN 0 0 Median 0.40262 0.5546 NaN 1 0 Median 5211200 3922000 1289200 0 0 0 5211200 3922000 1289200 2290 155 2346 8365 12637 12637 1 EASYSLIR EDVLPLAFTRLCEPKEASYSLIRKYVSQYY TRLCEPKEASYSLIRKYVSQYYPKLRVDIR K E A I R K 1 1 0 0 0 0 1 0 0 1 1 0 0 0 0 2 0 0 1 0 0 0 8 0 937.4869 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 275 282 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.00028048 139.68 4 2 0.55333 0.76379 5.8819 6 Median 0.5736 0.7892 3.852 4 0 Median 0.43594 0.71194 2.6734 2 0 Median 589490000 380510000 208980000 409060000 258410000 150650000 180430000 122100000 58327000 2291 1565 2347 8366;8367;8368;8369;8370;8371 12638;12639;12640;12641;12642;12643;12644;12645;12646;12647 12640 10 EASYSLIRK EDVLPLAFTRLCEPKEASYSLIRKYVSQYY RLCEPKEASYSLIRKYVSQYYPKLRVDIRP K E A R K Y 1 1 0 0 0 0 1 0 0 1 1 1 0 0 0 2 0 0 1 0 0 0 9 1 1065.5819 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 275 283 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.012874 95.815 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2471000 0 2471000 2471000 0 2471000 0 0 0 2292 1565 2348 8372;8373 12648;12649 12648 2 EATADDLIK VVANLQYDDGSGMKREATADDLIKVVEELT GSGMKREATADDLIKVVEELTRIH______ R E A I K V 2 0 0 2 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 9 0 974.49204 Q16531;B4DSA8;B4DZP5 Q16531 1123 1131 DDB1 DNA damage-binding protein 1 yes no 2 0.0070124 80.165 2 2 0.7877 1.1489 10.812 4 Median 0.83831 1.0496 9.8272 2 0 Median 0.77527 1.2192 5.4483 2 0 Median 119880000 66366000 53518000 55499000 29173000 26327000 64385000 37193000 27192000 2293 1520 2349 8374;8375;8376;8377 12650;12651;12652;12653;12654;12655 12655 6 EATAQKPTGSVGSTVTTPPPLVR KLVLLKKLRQSQIQKEATAQKPTGSVGSTV GSVGSTVTTPPPLVRGTQNIPAGKPSLQTS K E A V R G 2 1 0 0 0 1 1 2 0 0 1 1 0 0 4 2 5 0 0 3 0 0 23 1 2293.2278 A0A024R7K7;A0A024R7M6;Q86YP4 A0A024R7K7 173 195 GATAD2A Transcriptional repressor p66-alpha yes no 3 3.9092E-05 72.864 3 1 0.92761 1.3133 10.886 3 Median 1.0088 1.3416 15.296 2 0 Median 0.83518 1.3133 NaN 1 0 Median 29014000 16190000 12824000 15897000 9109100 6788200 13117000 7080900 6036100 2294 179 2350 8378;8379;8380;8381 12656;12657;12658;12659 12656 4 EATGHFQESEPFSHIDPEESEETR LLAKASYKKAIILTREATGHFQESEPFSHI EPFSHIDPEESEETRLLNILGLIFKGPAAS R E A T R L 1 1 0 1 0 1 7 1 2 1 0 0 0 2 2 3 2 0 0 0 0 0 24 0 2787.1896 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 538 561 NCAPD2 Condensin complex subunit 1 yes no 3;4 3.786E-48 166.38 8 3 0.66052 0.88001 13.499 11 Median 0.67663 0.93218 8.1089 8 0 Median 0.45618 0.71451 0.91979 3 0 Median 680050000 414750000 265300000 553040000 326900000 226140000 127010000 87856000 39159000 2295 757 2351 8382;8383;8384;8385;8386;8387;8388;8389;8390;8391;8392 12660;12661;12662;12663;12664;12665;12666;12667;12668;12669;12670;12671;12672;12673;12674;12675;12676;12677;12678;12679;12680;12681;12682 12663 23 EATTDFTVDSRPLTQVGGDHIK IKVFGPGIEGKDVFREATTDFTVDSRPLTQ VDSRPLTQVGGDHIKAHIANPSGASTECFV R E A I K A 1 1 0 3 0 1 1 2 1 1 1 1 0 1 1 1 4 0 0 2 0 0 22 1 2386.1765 O75369;A0A024R321;Q68CT4;E7EN95 O75369 1246 1267 FLNB;DKFZp686A1668 Filamin-B yes no 3 3.5183E-05 52.866 2 0.65494 0.85575 25.208 2 Median 0.65494 0.85575 25.208 2 0 Median NaN NaN NaN 0 0 Median 10334000 5548100 4786100 10334000 5548100 4786100 0 0 0 2296 1199 2352 8393;8394 12683;12684;12685;12686 12685 4 EATTEFSVDAR VQCYGPGIEGQGVFREATTEFSVDARALTQ GVFREATTEFSVDARALTQTGGPHVKARVA R E A A R A 2 1 0 1 0 0 2 0 0 0 0 0 0 1 0 1 2 0 0 1 0 0 11 0 1224.5622 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1273 1283 FLNA;FLJ00119 Filamin-A yes no 2 1.885E-09 162.88 4 0.88243 1.2098 13.803 4 Median 0.88243 1.2098 13.803 4 0 Median NaN NaN NaN 0 0 Median 179150000 91795000 87352000 179150000 91795000 87352000 0 0 0 2297 1287 2353 8395;8396;8397;8398 12687;12688;12689;12690;12691;12692;12693;12694;12695 12690 9 EAVCEVALDYK ASGIPYHSEVPVSLKEAVCEVALDYKKKKH VSLKEAVCEVALDYKKKKHVFKLRLNDGNE K E A Y K K 2 0 0 1 1 0 2 0 0 0 1 1 0 0 0 0 0 0 1 2 0 0 11 0 1295.6068 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;B4DIF8 B2ZZ89 2259 2269 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.010017 66.568 2 0.90867 1.1783 6.3707 2 Median 0.90867 1.1783 6.3707 2 0 Median NaN NaN NaN 0 0 Median 183600000 95362000 88233000 183600000 95362000 88233000 0 0 0 2298 346 2354 8399;8400 12696;12697 12697 2 EAVCEVALDYKK ASGIPYHSEVPVSLKEAVCEVALDYKKKKH SLKEAVCEVALDYKKKKHVFKLRLNDGNEY K E A K K K 2 0 0 1 1 0 2 0 0 0 1 2 0 0 0 0 0 0 1 2 0 0 12 1 1423.7017 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;B4DIF8 B2ZZ89 2259 2270 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 2.1123E-05 137.46 1 0.84474 1.0517 NaN 1 Median 0.84474 1.0517 NaN 1 0 Median NaN NaN NaN 0 0 Median 2611100 1360000 1251100 2611100 1360000 1251100 0 0 0 2299 346 2355 8401 12698;12699 12698 2 EAVCIVLSDDTCSDEK LFRGDTVLLKGKKRREAVCIVLSDDTCSDE AVCIVLSDDTCSDEKIRMNRVVRNNLRVRL R E A E K I 1 0 0 3 2 0 2 0 0 1 1 1 0 0 0 2 1 0 0 2 0 0 16 0 1839.7866 V9HW80;P55072;Q9HAP1;C9JUP7;C9IZA5 V9HW80 66 81 HEL-S-70;VCP Transitional endoplasmic reticulum ATPase yes no 2 0.00092438 114.87 3 0.25825 0.33388 NaN 1 Median 0.25825 0.33388 NaN 1 0 Median NaN NaN NaN 0 0 Median 5125400 4737200 388250 5125400 4737200 388250 0 0 0 2300 1376 2356 8402;8403;8404 12700;12701;12702 12700 2 EAVEQFESQGVDLSNIVK ENIEEFAMGPEEAVKEAVEQFESQGVDLSN EQFESQGVDLSNIVKTAPKVSADGSQEPTH K E A V K T 1 0 1 1 0 2 3 1 0 1 1 1 0 1 0 2 0 0 0 3 0 0 18 0 1990.9848 F5H3X1;F5H052;F5H2X2;F5H2K4;F5GWV0;F5H4P3;Q6NXE6 F5H3X1 32 49 ARMC6 Armadillo repeat-containing protein 6 yes no 2 0.00044411 100.73 2 0.42026 0.53816 NaN 1 Median 0.42026 0.53816 NaN 1 0 Median NaN NaN NaN 0 0 Median 6347400 5214500 1132800 6347400 5214500 1132800 0 0 0 2301 1053 2357 8405;8406 12703;12704 12703 1 EAVGDLLDAFK SVPKRRRKIKELNKKEAVGDLLDAFKEANP LNKKEAVGDLLDAFKEANPAVPEVENQPPA K E A F K E 2 0 0 2 0 0 1 1 0 0 2 1 0 1 0 0 0 0 0 1 0 0 11 0 1176.6027 E7EX73;B4DSI9;E9PGM1;E7EUU4;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637;C9JF13;C9J6B6;C9K073;C9J2Z7 E7EX73 361 371 EIF4G1;EIF4G1 variant protein Eukaryotic translation initiation factor 4 gamma 1 yes no 2 0.0073775 52.49 1 0.8197 1.0446 NaN 1 Median 0.8197 1.0446 NaN 1 0 Median NaN NaN NaN 0 0 Median 2014400 1147300 867140 2014400 1147300 867140 0 0 0 2302 747 2358 8407 12705 12705 1 EAVLLLK PLVVEDKVEGYKKTKEAVLLLKKLKAWNDI VEGYKKTKEAVLLLKKLKAWNDIKKVYASQ K E A L K K 1 0 0 0 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 7 0 784.50584 P36578;Q59GY2;B4DFI6;H3BM89;Q53G74;B4DMJ2;H3BTP7 P36578 166 172 RPL4 60S ribosomal protein L4 yes no 1;2 0.018706 170.31 3 2 0.67223 1.0159 7.9031 5 Median 0.74651 0.99021 9.7979 3 0 Median 0.65032 1.029 1.8116 2 0 Median 1273800000 735970000 537820000 1041200000 597240000 443940000 232610000 138730000 93877000 2303 1325 2359 8408;8409;8410;8411;8412 12706;12707;12708;12709;12710;12711;12712;12713 12713 8 EAVLLLKK PLVVEDKVEGYKKTKEAVLLLKKLKAWNDI EGYKKTKEAVLLLKKLKAWNDIKKVYASQR K E A K K L 1 0 0 0 0 0 1 0 0 0 3 2 0 0 0 0 0 0 0 1 0 0 8 1 912.6008 P36578;Q59GY2;B4DFI6;H3BM89;Q53G74;B4DMJ2;H3BTP7 P36578 166 173 RPL4 60S ribosomal protein L4 yes no 2 0.024161 57.471 2 0.79765 0.98417 1.1774 2 Median 0.79765 0.98417 1.1774 2 0 Median NaN NaN NaN 0 0 Median 39265000 22544000 16722000 39265000 22544000 16722000 0 0 0 2304 1325 2360 8413;8414 12714;12715 12715 2 EAVLNAYR RRMLPLIWSKEPGVREAVLNAYRQLYLNPK SKEPGVREAVLNAYRQLYLNPKGDSARAKA R E A Y R Q 2 1 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 8 0 934.48723 B3KMS0;Q15021;B3KY03;E7EN77;Q6ZV00 B3KMS0 691 698 NCAPD2 Condensin complex subunit 1 yes no 2 2.7861E-05 138.07 3 2 0.65797 0.89836 10.906 5 Median 0.70152 0.96289 4.1363 3 0 Plateau 0.4771 0.77966 3.3269 2 0 Median 375060000 239460000 135610000 185790000 110230000 75561000 189270000 129230000 60045000 2305 757 2361 8415;8416;8417;8418;8419 12716;12717;12718;12719;12720;12721;12722;12723;12724;12725 12721 10 EAVVHGLNESEASYLITSVELLESK KYNFPLVTLYATLGKEAVVHGLNESEASYL EASYLITSVELLESKLKTALLDISCVKHII K E A S K L 2 0 1 0 0 0 5 1 1 1 4 1 0 0 0 4 1 0 1 3 0 0 25 0 2716.3807 B4DH39;Q8TAF6;O60488 B4DH39 126 150 FACL4;ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 3 1.8024E-20 115.01 3 0.50953 0.6468 18.748 3 Median 0.50953 0.6468 18.748 3 0 Median NaN NaN NaN 0 0 Median 18535000 10750000 7784600 18535000 10750000 7784600 0 0 0 2306 806 2362 8420;8421;8422 12726;12727;12728;12729;12730;12731;12732 12732 7 EAVVHLR KRKAEVKKTKAGNTKEAVVHLRKSTRNTSN KTKAGNTKEAVVHLRKSTRNTSNIPVILEP K E A L R K 1 1 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 2 0 0 7 0 822.47119 Q6P0N0 Q6P0N0 798 804 MIS18BP1 Mis18-binding protein 1 yes yes 2 0.01431 96.048 2 0.69258 1.002 0.90835 2 Median NaN NaN NaN 0 0 Median 0.69258 1.002 0.90835 2 0 Median 13822000 8167700 5654500 0 0 0 13822000 8167700 5654500 2307 1588 2363 8423;8424 12733;12734;12735;12736 12734 4 EAVVNTQELLDLLVK NKWNTALIGLMTYFREAVVNTQELLDLLVK EAVVNTQELLDLLVKCENKIQTRIKIGLNS R E A V K C 1 0 1 1 0 1 2 0 0 0 4 1 0 0 0 0 1 0 0 3 0 0 15 0 1682.9455 Q6P2Q9;B4DK16 Q6P2Q9 1276 1290 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 1.7737E-15 110.08 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2308 1592 2364 8425;8426 12737;12738 12737 2 EAVVQEPER EAQINTAKRLLEKGKEAVVQEPERSWFQTK LLEKGKEAVVQEPERSWFQTKEERKKEKIA K E A E R S 1 1 0 0 0 1 3 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 9 0 1055.5247 B7Z6D5;B3GQE6;Q96GQ7;Q53G15 B7Z6D5 611 619 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 4.4281E-18 138.1 4 2 0.69554 1.0035 11.854 4 Median 0.82251 1.1082 2.7567 2 0 Median 0.60163 0.90633 3.1202 2 0 Median 119060000 84871000 34193000 78798000 58911000 19887000 40267000 25961000 14306000 2309 750 2365 8427;8428;8429;8430;8431;8432 12739;12740;12741;12742;12743;12744;12745;12746;12747;12748 12741 10 EAVVYLAHTHDGAR YAPPKLRSEMIEAIREAVVYLAHTHDGARV REAVVYLAHTHDGARVAMHCLWHGTPKDRK R E A A R V 3 1 0 1 0 0 1 1 2 0 1 0 0 0 0 0 1 0 1 2 0 0 14 0 1537.7637 Q15397;B2RDG4 Q15397 353 366 KIAA0020 Pumilio domain-containing protein KIAA0020 yes no 3 1.6751E-06 123.28 4 2 0.74922 1.0181 48.181 5 Median 0.78337 1.0661 8.8578 4 0 Median 0.27049 0.36553 NaN 1 0 Median 111150000 64476000 46676000 100270000 54720000 45551000 10881000 9756100 1125000 2310 1511 2366 8433;8434;8435;8436;8437;8438 12749;12750;12751;12752;12753;12754;12755 12750 7 EAYGAVTQTVR LVSDTRRVSDIQWFREAYGAVTQTVRVVAL QWFREAYGAVTQTVRVVALEQSRQQRGWVF R E A V R V 2 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 2 0 1 2 0 0 11 0 1193.6041 Q6FGV9;Q15126 Q6FGV9 120 130 PMVK Phosphomevalonate kinase yes no 2 0.0037662 70.552 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1856700 1856700 0 1856700 1856700 0 0 0 0 2311 1506 2367 8439 12756 12756 1 EAYLVGLFEDTNLCAIHAK LRFQSSAVMALQEAREAYLVGLFEDTNLCA VGLFEDTNLCAIHAKRVTIMPKDIQLVSRI R E A A K R 3 0 1 1 1 0 2 1 1 1 3 1 0 1 0 0 1 0 1 1 0 0 19 0 2163.067 Q5TEC6 Q5TEC6 98 116 HIST2H3PS2 Histone H3 yes yes 2;3 3.3441E-31 175.88 8 0.68888 0.88853 8.1845 8 Median 0.68888 0.88853 8.1845 8 0 Median NaN NaN NaN 0 0 Median 90711000 51840000 38871000 90711000 51840000 38871000 0 0 0 2312 1577 2368 8440;8441;8442;8443;8444;8445;8446;8447 12757;12758;12759;12760;12761;12762;12763;12764;12765;12766;12767;12768 12763 12 EAYNDSSDEESSSHHGPGVQCAHQ QEFDSTRGSGGGQRREAYNDSSDEESSSHH ESSSHHGPGVQCAHQ_______________ R E A H Q - 2 0 1 2 1 2 3 2 3 0 0 0 0 0 1 5 0 0 1 1 0 0 24 0 2627.0215 A0A024R6S1;O60884 A0A024R6S1 389 412 DNAJA2 DnaJ homolog subfamily A member 2 yes no 3 0.019901 51.526 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1186000 0 0 1186000 0 0 0 0 0 2313 164 2369 8448 12769 12769 1 ECADLWPR KGEMKGSAITGPVAKECADLWPRIASNAGS ITGPVAKECADLWPRIASNAGSIA______ K E C P R I 1 1 0 1 1 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 8 0 1045.4651 Q9BTQ7;A0A024R1Q8;P62829;J3KTJ3 Q9BTQ7 118 125 RPL23 60S ribosomal protein L23 yes no 2 0.024344 54.549 2 0.5331 0.82957 3.5067 2 Median NaN NaN NaN 0 0 Median 0.5331 0.82957 3.5067 2 0 Median 47700000 29742000 17958000 0 0 0 47700000 29742000 17958000 2314 63 2370 8449;8450 12770;12771;12772 12771 3 ECGQLLISENQK TRQRKCGFCKSNRDKECGQLLISENQKVAA RDKECGQLLISENQKVAAHHKCMLFSSALV K E C Q K V 0 0 1 0 1 2 2 1 0 1 2 1 0 0 0 1 0 0 0 0 0 0 12 0 1417.6871 Q8IWS0;A0A0D9SGE8;Q5JRC6 Q8IWS0 27 38 PHF6 PHD finger protein 6 yes no 2 5.2067E-52 242.35 4 1 0.8999 1.1638 20.6 5 Median 0.93376 1.1872 10.039 4 0 Median 0.51008 0.75383 NaN 1 0 Median 93056000 50866000 42190000 83397000 44754000 38644000 9658900 6112800 3546100 2315 1625 2371 8451;8452;8453;8454;8455 12773;12774;12775;12776;12777;12778;12779;12780 12774 8 ECLPLIIFLR GVFAPRPSTGPHKLRECLPLIIFLRNRLKY PHKLRECLPLIIFLRNRLKYALTGDEVKKI R E C L R N 0 1 0 0 1 0 1 0 0 2 3 0 0 1 1 0 0 0 0 0 0 0 10 0 1272.7264 B2R491;P62701;Q96IR1;Q53HV1;B7Z1M6 B2R491 40 49 RPS4X 40S ribosomal protein S4;40S ribosomal protein S4, X isoform yes no 2 8.6691E-07 145.34 4 0.76883 1.0277 7.2472 4 Median 0.76883 1.0277 7.2472 4 0 Median NaN NaN NaN 0 0 Median 37955000 21303000 16652000 37955000 21303000 16652000 0 0 0 2316 681 2372 8456;8457;8458;8459 12781;12782;12783;12784;12785;12786;12787 12781 7 ECNPPNSQPASYQR ADEKERKNRERERERECNPPNSQPASYQRR RECNPPNSQPASYQRRLLVTRSGRKIKGRG R E C Q R R 1 1 2 0 1 2 1 0 0 0 0 0 0 0 3 2 0 0 1 0 0 0 14 0 1646.7107 Q32LZ0;Q2NKQ6;E9PG73;Q13427;C9JM79 Q32LZ0 309 322 PPIG Peptidyl-prolyl cis-trans isomerase G yes no 2 0.038594 73.273 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 837910 837910 0 837910 837910 0 0 0 0 2317 1026 2373 8460 12788 12788 1 ECPSDECGAGVFMASHFDR YYKVDENGKISRLRRECPSDECGAGVFMAS DECGAGVFMASHFDRHYCGKCCLTYCFNKP R E C D R H 2 1 0 2 2 0 2 2 1 0 0 0 1 2 1 2 0 0 0 1 0 0 19 0 2170.8507 Q5RKT7;B2RDW1;P62979;Q8WYN9 Q5RKT7 120 138 RPS27A;HEL112 Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a yes no 3 4.689E-20 151.31 7 0.77048 1.0419 7.9775 7 Median 0.77048 1.0419 7.9775 7 0 Median NaN NaN NaN 0 0 Median 165920000 88919000 77004000 165920000 88919000 77004000 0 0 0 2318 742 2374;2375 8461;8462;8463;8464;8465;8466;8467 12789;12790;12791;12792;12793;12794;12795;12796;12797;12798;12799;12800;12801 12789 256 13 ECSFCEDPR PVTLTEMNYSKYGAKECSFCEDPRFARTGV SKYGAKECSFCEDPRFARTGVCISCDAGMC K E C P R F 0 1 0 1 2 0 2 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 9 0 1198.4383 A0A0U1RRH6;O94880;B4DG57 A0A0U1RRH6 440 448 PHF14 PHD finger protein 14 yes no 2 0.021607 51.346 2 0.80083 1.0753 6.2021 2 Median 0.80083 1.0753 6.2021 2 0 Median NaN NaN NaN 0 0 Median 19258000 11364000 7893400 19258000 11364000 7893400 0 0 0 2319 487 2376 8468;8469 12802;12803 12803 2 ECSVTSDLDFPTQVIPLK PVHILTSVSSLRGTRECSVTSDLDFPTQVI VTSDLDFPTQVIPLKTLNAVASVPIMYSWS R E C L K T 0 0 0 2 1 1 1 0 0 1 2 1 0 1 2 2 2 0 0 2 0 0 18 0 2048.0136 A0A090N8E9;Q15910;B7Z8K5;G3XAL2;Q59H64;Q6R125 A0A090N8E9 82 99 EZH2 Histone-lysine N-methyltransferase EZH2 yes no 2 3.9761E-40 188.4 5 0.87213 1.0345 4.4902 4 Linear 0.87213 1.0345 4.4902 4 0 Linear NaN NaN NaN 0 0 Median 59907000 31208000 28699000 59907000 31208000 28699000 0 0 0 2320 381 2377 8470;8471;8472;8473;8474 12804;12805;12806;12807;12808;12809;12810;12811 12804 8 ECYYLTCQLYALK SKVKEAQDIILQLRKECYYLTCQLYALKGK RKECYYLTCQLYALKGKLTSQQTVEPAQNQ K E C L K G 1 0 0 0 2 1 1 0 0 0 3 1 0 0 0 0 1 0 3 0 0 0 13 0 1723.795 B5BUA4;Q5FBB7;A0A024R2J4 B5BUA4 88 100 SGOL1 Shugoshin-like 1 yes no 2 0.020498 66.595 1 1.201 1.5819 NaN 1 Median 1.201 1.5819 NaN 1 0 Median NaN NaN NaN 0 0 Median 2183400 857720 1325700 2183400 857720 1325700 0 0 0 2321 895 2378 8475 12812 12812 1 EDAAGTSGLGELNSR KVSDEREGTTKGNEKEDAAGTSGLGELNSR EDAAGTSGLGELNSREQTNQSLRKGKKKKR K E D S R E 2 1 1 1 0 0 2 3 0 0 2 0 0 0 0 2 1 0 0 0 0 0 15 0 1475.6852 Q5T3I0;A8KAG1;A0A0A0MRK1;E9PAV9;F8W895 Q5T3I0 266 280 GPATCH4 G patch domain-containing protein 4 yes no 2 1.5585E-50 227.48 4 2 0.85266 1.2865 9.0403 6 Median 0.94138 1.2664 11.054 4 0 Median 0.78538 1.2865 0.52223 2 0 Median 372060000 198050000 174010000 144350000 70330000 74019000 227710000 127720000 99995000 2322 1568 2379 8476;8477;8478;8479;8480;8481 12813;12814;12815;12816;12817;12818;12819;12820;12821;12822;12823;12824;12825;12826;12827 12816 15 EDAGDNDDTEGAIGVR RMELREHGEKKKRSREDAGDNDDTEGAIGV DAGDNDDTEGAIGVRNKVAGGKMKKRKGR_ R E D V R N 2 1 1 4 0 0 2 3 0 1 0 0 0 0 0 0 1 0 0 1 0 0 16 0 1632.6863 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;Q7Z4B1 Q53GJ1 419 434 hCG_27698;DDX47;E4-DBP;MST162 Probable ATP-dependent RNA helicase DDX47 yes no 2 5.4128E-25 170.4 4 2 0.79987 1.0904 27.615 6 Median 0.87417 1.169 7.08 4 0 Median 0.46707 0.68196 0.024542 2 0 Median 53584000 32146000 21438000 26333000 13824000 12509000 27251000 18322000 8928700 2323 249 2380 8482;8483;8484;8485;8486;8487 12828;12829;12830;12831;12832;12833;12834;12835;12836;12837;12838;12839;12840 12832 13 EDAIEHFMK GTVIGSNKLEQMPSKEDAIEHFMKLYEEKT EQMPSKEDAIEHFMKLYEEKTGNAWHSKNF K E D M K L 1 0 0 1 0 0 2 0 1 1 0 1 1 1 0 0 0 0 0 0 0 0 9 0 1118.5066 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 608 616 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.031297 79.713 2 1.3948 1.7604 NaN 1 Median 1.3948 1.7604 NaN 1 0 Median NaN NaN NaN 0 0 Median 11596000 5663300 5932700 11596000 5663300 5932700 0 0 0 2324 107 2381;2382 8488;8489 12841;12842 12842 2 EDALELTEK IAKSKQEKRERQAQREDALELTEKLDQDWK ERQAQREDALELTEKLDQDWKEIQTLLSHK R E D E K L 1 0 0 1 0 0 3 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1046.5132 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 212 220 NOP14 Nucleolar protein 14 yes no 2 0.03138 44.318 1 0.90446 1.2447 NaN 1 Median NaN NaN NaN 0 0 Median 0.90446 1.2447 NaN 1 0 Median 3640900 1987400 1653500 0 0 0 3640900 1987400 1653500 2325 652 2383 8490 12843 12843 1 EDCFFYSLVFDPVQK TLLNETDILSQYLEKEDCFFYSLVFDPVQK EDCFFYSLVFDPVQKTLLADQGEIRVGCKY K E D Q K T 0 0 0 2 1 1 1 0 0 0 1 1 0 3 1 1 0 0 1 2 0 0 15 0 1892.8655 A0A024R534;O94776 A0A024R534 124 138 MTA2 Metastasis-associated protein MTA2 yes no 2 8.7261E-06 101.47 3 0.71984 0.91181 2.9802 2 Median 0.71984 0.91181 2.9802 2 0 Median NaN NaN NaN 0 0 Median 24729000 11886000 12843000 24729000 11886000 12843000 0 0 0 2326 133 2384 8491;8492;8493 12844;12845;12846;12847 12845 4 EDEAPILEQR PTLLPNNTGPGKRKREDEAPILEQRENRMN GKRKREDEAPILEQRENRMNPLRCPVKFYE R E D Q R E 1 1 0 1 0 1 3 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 10 0 1198.583 A6NHN7;A6NHB5;Q14202 A6NHN7 1187 1196 ZMYM3 Zinc finger MYM-type protein 3 yes no 2 0.010889 101.46 2 2 1.251 1.6168 8.5416 2 Median NaN NaN NaN 0 0 Median 1.251 1.6168 8.5416 2 0 Median 9304500 4578400 4726100 783350 783350 0 8521100 3795000 4726100 2327 565 2385 8494;8495;8496;8497 12848;12849;12850;12851 12849 3 EDEEEDEPVVIK SPAFALKNRIRMPTKEDEEEDEPVVIKAQP PTKEDEEEDEPVVIKAQPVPHYGVPFKPQI K E D I K A 0 0 0 2 0 0 5 0 0 1 0 1 0 0 1 0 0 0 0 2 0 0 12 0 1429.646 Q643R0;Q9ULW0;B3KM90 Q643R0 501 512 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 1.4686E-16 170.5 3 2 0.61416 0.92914 3.6988 2 Median NaN NaN NaN 0 0 Median 0.61416 0.92914 3.6988 2 0 Median 43177000 28284000 14892000 2821000 2821000 0 40355000 25463000 14892000 2328 1581 2386 8498;8499;8500;8501;8502 12852;12853;12854;12855;12856;12857;12858 12853 7 EDEQQQALQDIASR QEVDEFLLRLSKLTKEDEQQQALQDIASRC KEDEQQQALQDIASRCTANDLKCIIRLIKH K E D S R C 2 1 0 2 0 4 2 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 14 0 1629.7594 P49916;B7Z6I3;K7ERZ5;K7EQB6 P49916 390 403 LIG3 DNA ligase 3;DNA ligase yes no 2 7.8807E-102 279.75 4 2 0.71972 0.97268 31.604 6 Median 0.66572 0.91412 8.4373 4 0 Median 1.1844 1.6754 1.7562 2 0 Median 54844000 28709000 26135000 37154000 20696000 16458000 17690000 8014000 9676300 2329 1356 2387 8503;8504;8505;8506;8507;8508 12859;12860;12861;12862;12863;12864;12865;12866;12867;12868;12869;12870;12871 12860 13 EDFDSLLQSAK AQTDLLQIDPNFGSKEDFDSLLQSAKKKSI FGSKEDFDSLLQSAKKKSIRVILDLTPNYR K E D A K K 1 0 0 2 0 1 1 0 0 0 2 1 0 1 0 2 0 0 0 0 0 0 11 0 1251.5983 B4E2Z3;F5GZS6;J3KPF3;P08195;A0A024R599 B4E2Z3 169 179 SLC3A2 4F2 cell-surface antigen heavy chain yes no 2 0.01789 51.436 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2997500 0 2997500 0 0 0 2997500 0 2997500 2330 889 2388 8509 12872 12872 1 EDFELQLNK QELAGYTGGDVSFIKEDFELQLNKQLIFDS DVSFIKEDFELQLNKQLIFDSVFSASFWGG K E D N K Q 0 0 1 1 0 1 2 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1134.5557 Q9Y512;B4DN54;B3KUE6 Q9Y512 298 306 SAMM50 Sorting and assembly machinery component 50 homolog yes no 2 3.2933E-05 134.81 3 0.41659 0.52899 8.2914 2 Median 0.41659 0.52899 8.2914 2 0 Median NaN NaN NaN 0 0 Median 22206000 16134000 6071900 22206000 16134000 6071900 0 0 0 2331 1827 2389 8510;8511;8512 12873;12874;12875;12876 12874 4 EDFHSYLPIIDPILSK AVGEHEKVINNQKEKEDFHSYLPIIDPILS DFHSYLPIIDPILSKSKSYKNEVTPSSTTA K E D S K S 0 0 0 2 0 0 1 0 1 3 2 1 0 1 2 2 0 0 1 0 0 0 16 0 1885.9826 Q8IZT6;B3KWI2 Q8IZT6 539 554 ASPM Abnormal spindle-like microcephaly-associated protein yes no 3 1.5006E-05 63.128 2 0.74539 0.9469 NaN 1 Median 0.74539 0.9469 NaN 1 0 Median NaN NaN NaN 0 0 Median 2811200 1409500 1401800 2811200 1409500 1401800 0 0 0 2332 1631 2390 8513;8514 12877;12878 12877 2 EDFVLSITGK RLLAKLRKDIRPECREDFVLSITGKKAPGC RPECREDFVLSITGKKAPGCVLSNPDQKGK R E D G K K 0 0 0 1 0 0 1 1 0 1 1 1 0 1 0 1 1 0 0 1 0 0 10 0 1107.5812 Q6FI30;B7Z4T6;P08651 Q6FI30 81 90 NFIC Nuclear factor 1;Nuclear factor 1 C-type yes no 2 0.00089765 68.846 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5285200 5285200 0 5285200 5285200 0 0 0 0 2333 909 2391 8515;8516;8517 12879;12880;12881 12881 3 EDFVLTVTGK RLLAKLRKDIRPEYREDFVLTVTGKKPPCC RPEYREDFVLTVTGKKPPCCVLSNPDQKGK R E D G K K 0 0 0 1 0 0 1 1 0 0 1 1 0 1 0 0 2 0 0 2 0 0 10 0 1107.5812 S4R3K4;B1AKN6;B1AKN7;B1AKN5;B4DRN9;B1AKN8;Q12857;U3KPY9;A0A087WXP2;Q5W0Y9;A0A0S2Z4H3 S4R3K4 42 51 NFIA;NFIB Nuclear factor 1;Nuclear factor 1 A-type no no 2 0.0078144 66.27 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5285200 5285200 0 5285200 5285200 0 0 0 0 2334 674 2392 8518 12882 12882 1 EDGAISTIVLR SEVGDTQVVVFKHEKEDGAISTIVLRGSTD KHEKEDGAISTIVLRGSTDNLMDDIERAVD K E D L R G 1 1 0 1 0 0 1 1 0 2 1 0 0 0 0 1 1 0 0 1 0 0 11 0 1172.6401 Q7Z759;Q53HU0;P50990 Q7Z759 317 327 CCT8 T-complex protein 1 subunit theta yes no 2 0.0019252 106.88 3 2 0.93867 1.2402 187.32 2 Median 0.2401 0.32981 NaN 1 0 Median 3.6697 4.6638 NaN 1 0 Median 22217000 14809000 7407900 15165000 13901000 1264000 7051700 907760 6143900 2335 1359 2393 8519;8520;8521;8522;8523 12883;12884;12885;12886;12887 12883 5 EDGELNLMK KIDISAVVAYTIAVKEDGELNLMKKAASIT YTIAVKEDGELNLMKKAASITSEVFNKFFK K E D M K K 0 0 1 1 0 0 2 1 0 0 2 1 1 0 0 0 0 0 0 0 0 0 9 0 1047.4907 Q9Y5B9;Q0VGA3 Q9Y5B9 176 184 SUPT16H FACT complex subunit SPT16 yes no 2 0.012094 60.019 2 2 0.65463 0.98294 5.6384 3 Median 0.8621 1.0804 NaN 1 0 Median 0.64953 0.98005 0.41675 2 0 Median 42453000 25405000 17047000 4302000 2413300 1888700 38151000 22992000 15159000 2336 1829 2394;2395 8524;8525;8526;8527 12888;12889;12890;12891 12890 852 4 EDGLAQQQTQLNLR SKADEASELACPTPKEDGLAQQQTQLNLRS KEDGLAQQQTQLNLRSLLVNPEGPTLMRLN K E D L R S 1 1 1 1 0 4 1 1 0 0 3 0 0 0 0 0 1 0 0 0 0 0 14 0 1612.8169 A0A0U1RQF0;P49327 A0A0U1RQF0 2205 2218 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 9.233E-33 195.83 4 2 0.63261 0.87294 97.372 5 Median 0.62685 0.8626 15.39 4 0 Median 5.3813 7.6787 NaN 1 0 Median 47141000 19848000 27293000 29473000 17628000 11845000 17669000 2220000 15449000 2337 486 2396 8528;8529;8530;8531;8532;8533 12892;12893;12894;12895;12896;12897;12898 12892 7 EDGNEEDKENQGDETQGQQPPQR RPRFRRGPPRQRQPREDGNEEDKENQGDET ENQGDETQGQQPPQRRYRRNFNYRRRRPEN R E D Q R R 0 1 2 3 0 5 5 3 0 0 0 1 0 0 2 0 1 0 0 0 0 0 23 1 2627.0968 H0Y449;P67809;A0JLU4;Q2VIK8 H0Y449 307 329 YBX1 Nuclease-sensitive element-binding protein 1 yes no 3 7.8593E-07 101.05 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 389650 0 389650 389650 0 389650 0 0 0 2338 1089 2397 8534 12899 12899 1 EDGNEEDKENQGDETQGQQPPQRR RPRFRRGPPRQRQPREDGNEEDKENQGDET NQGDETQGQQPPQRRYRRNFNYRRRRPENP R E D R R Y 0 2 2 3 0 5 5 3 0 0 0 1 0 0 2 0 1 0 0 0 0 0 24 2 2783.1979 H0Y449;P67809;A0JLU4;Q2VIK8 H0Y449 307 330 YBX1 Nuclease-sensitive element-binding protein 1 yes no 3;4 1.3225E-22 133.95 2 0.82065 0.91248 24.11 2 Median 0.82065 0.91248 24.11 2 0 Median NaN NaN NaN 0 0 Median 2480700 1235000 1245700 2480700 1235000 1245700 0 0 0 2339 1089 2398 8535;8536 12900;12901;12902 12901 3 EDGSGDRGDGPFR CDISLQFFLPFSLGKEDGSGDRGDGPFRLG GKEDGSGDRGDGPFRLGGHGPSFPLKGITE K E D F R L 0 2 0 3 0 0 1 4 0 0 0 0 0 1 1 1 0 0 0 0 0 0 13 1 1363.5753 P13010;Q53T09 P13010 172 184 XRCC5 X-ray repair cross-complementing protein 5 yes no 2;3 0.010934 40.715 2 0.51523 0.68497 8.5634 2 Median 0.51523 0.68497 8.5634 2 0 Median NaN NaN NaN 0 0 Median 33469000 22231000 11238000 33469000 22231000 11238000 0 0 0 2340 1262 2399 8537;8538 12903;12904 12904 2 EDGSKYETIHLTEEPTK IPEDASESEEKLDQKEDGSKYETIHLTEEP GSKYETIHLTEEPTKLMHNASDSEVDQDDV K E D T K L 0 0 0 1 0 0 4 1 1 1 1 2 0 0 1 1 3 0 1 0 0 0 17 1 1975.9375 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 931 947 ADNP Activity-dependent neuroprotector homeobox protein yes no 3 0.0024372 65.105 1 0.92568 1.1523 NaN 1 Median 0.92568 1.1523 NaN 1 0 Median NaN NaN NaN 0 0 Median 4348000 2578600 1769400 4348000 2578600 1769400 0 0 0 2341 729 2400 8539 12905 12905 1 EDHEVEVGVLK VSERRLNQEVALNLKEDHEVEVGVLKESVD LNLKEDHEVEVGVLKESVDLPEEKLPISDS K E D L K E 0 0 0 1 0 0 3 1 1 0 1 1 0 0 0 0 0 0 0 3 0 0 11 0 1252.6299 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1488 1498 AHCTF1 Protein ELYS yes no 2;3 4.2266E-34 223.84 5 2 0.69516 0.91804 8.2184 6 Median 0.75528 0.9466 10.392 4 0 Median 0.59487 0.91804 1.2161 2 0 Median 143180000 74550000 68630000 91279000 42163000 49116000 51901000 32387000 19513000 2342 1670 2401 8540;8541;8542;8543;8544;8545;8546 12906;12907;12908;12909;12910;12911;12912 12907 5 EDIDAAIETYNLLSER RPQHMLMRVSVGIHKEDIDAAIETYNLLSE DIDAAIETYNLLSERWFTHASPTLFNAGTN K E D E R W 2 1 1 2 0 0 3 0 0 2 2 0 0 0 0 1 1 0 1 0 0 0 16 0 1850.8898 B4E0I8;B4DNN4;P23921;B4DS95;Q53GZ5 B4E0I8 84 99 RRM1 Ribonucleoside-diphosphate reductase;Ribonucleoside-diphosphate reductase large subunit yes no 2 9.0071E-14 150.51 1 0.30445 0.40814 NaN 1 Median 0.30445 0.40814 NaN 1 0 Median NaN NaN NaN 0 0 Median 3663600 2817000 846600 3663600 2817000 846600 0 0 0 2343 839 2402 8547 12913 12913 1 EDIERMVQEAEK ENKITITNDKGRLSKEDIERMVQEAEKYKA LSKEDIERMVQEAEKYKAEDEKQRDKVSSK K E D E K Y 1 1 0 1 0 1 4 0 0 1 0 1 1 0 0 0 0 0 0 1 0 0 12 1 1475.6926 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;E9PNE6;B4E1Q1;A8K7Q2;Q96H53;E9PS65;Q96BE0;E9PM13 V9HW22 513 524 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 2 0.032346 45.161 1 1.76 2.2883 NaN 1 Median 1.76 2.2883 NaN 1 0 Median NaN NaN NaN 0 0 Median 10876000 4263000 6612700 10876000 4263000 6612700 0 0 0 2344 1253 2403 8548 12914 12914 1 EDIIQGFR TVYCLNDDDETEVLKEDIIQGFRYGSDIVP DETEVLKEDIIQGFRYGSDIVPFSKVDEEQ K E D F R Y 0 1 0 1 0 1 1 1 0 2 0 0 0 1 0 0 0 0 0 0 0 0 8 0 976.49779 P13010;Q53T09 P13010 308 315 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 4.681E-05 138.85 3 2 0.54763 0.77443 10.981 5 Median 0.54763 0.75142 6.63 3 0 Median 0.54224 0.87855 3.4818 2 0 Median 315480000 202020000 113460000 194250000 124650000 69603000 121230000 77371000 43857000 2345 1262 2404 8549;8550;8551;8552;8553 12915;12916;12917;12918;12919;12920;12921;12922;12923;12924 12921 10 EDIKPLK IKDEPEDDGYFVPPKEDIKPLKRPRDEDDA DGYFVPPKEDIKPLKRPRDEDDADYKPKKI K E D L K R 0 0 0 1 0 0 1 0 0 1 1 2 0 0 1 0 0 0 0 0 0 0 7 1 841.49092 P11387;B9EG90;Q6PK95;Q6NWZ5 P11387 131 137 TOP1 DNA topoisomerase 1 yes no 2 0.005305 107.67 2 0.73546 0.90263 5.0534 2 Median 0.73546 0.90263 5.0534 2 0 Median NaN NaN NaN 0 0 Median 144140000 81123000 63016000 144140000 81123000 63016000 0 0 0 2346 1255 2405 8554;8555 12925;12926 12925 1 EDILVTLNDLIK TFSECLNLINEGCPKEDILVTLNDLIKNIP CPKEDILVTLNDLIKNIPDAKKLVKYWICL K E D I K N 0 0 1 2 0 0 1 0 0 2 3 1 0 0 0 0 1 0 0 1 0 0 12 0 1384.7813 B2RMQ4;Q8WWK9 B2RMQ4 440 451 CKAP2 Cytoskeleton-associated protein 2 yes no 2 3.1478E-24 181.53 4 1.199 1.4933 3.4856 3 Median 1.199 1.4933 3.4856 3 0 Median NaN NaN NaN 0 0 Median 61895000 25633000 36261000 61895000 25633000 36261000 0 0 0 2347 745 2406 8556;8557;8558;8559 12927;12928;12929;12930;12931;12932;12933 12929 7 EDISQGVHISVYR LTAEQRKVKKIKKLKEDISQGVHISVYRVR LKEDISQGVHISVYRVRNLSNPAKKFKIEA K E D Y R V 0 1 0 1 0 1 1 1 1 2 0 0 0 0 0 2 0 0 1 2 0 0 13 0 1501.7525 B4DLS8;Q53GV6;B2R791;O43395;B4DM28 B4DLS8 521 533 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes no 2 0.016002 51.927 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2348 703 2407 8560 12934 12934 1 EDITQSAQHALR KEATDAIGHLDRQQREDITQSAQHALRLAA QQREDITQSAQHALRLAAFGQLHKVLGMDP R E D L R L 2 1 0 1 0 2 1 0 1 1 1 0 0 0 0 1 1 0 0 0 0 0 12 0 1367.6793 F4ZW64;A8K590;F4ZW65;A0A024R7C7;F4ZW66;Q12906;Q59GP7;B4DFG4 F4ZW64 312 323 ILF3 Interleukin enhancer-binding factor 3 yes no 2 0.027125 37.717 1 1.0912 1.4282 NaN 1 Median NaN NaN NaN 0 0 Median 1.0912 1.4282 NaN 1 0 Median 3220000 1609700 1610300 0 0 0 3220000 1609700 1610300 2349 175 2408 8561 12935 12935 1 EDIYAVEIVGGATR EPPLRSVLEQTKLKKEDIYAVEIVGGATRI KEDIYAVEIVGGATRIPAVKEKISKFFGKE K E D T R I 2 1 0 1 0 0 2 2 0 2 0 0 0 0 0 0 1 0 1 2 0 0 14 0 1491.7569 O14992;A0A087WTS8;B4E0H6;B4E354;B4DT47;A0A087WYC1;B4DIZ3;B4DUS3;Q59GF8;V9HW33;B4DH02;P34932 O14992 333 346 HS24/p52;HSPA4;HEL-S-5a Heat shock 70 kDa protein 4 yes no 2 9.9194E-06 81.625 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2350 336 2409 8562 12936 12936 1 EDKYEEEIK NLKCLSAAEEKYSQKEDKYEEEIKILTDKL EKYSQKEDKYEEEIKILTDKLKEAETRAEF K E D I K I 0 0 0 1 0 0 4 0 0 1 0 2 0 0 0 0 0 0 1 0 0 0 9 1 1181.5452 Q5HYB6;B2RDE1;A0A0S2Z4I4;A0A0S2Z4G8;A0A0S2Z4G4;Q8NAG3;B4DWT5;Q5VU61;J3KN67;M1VPF4;P06753;Q6LDX7;Q5VU62;B4DQ80;Q8NAH0;Q8NI98;B4DVY2;V9HW56;P67936;B4DTB1;V9HW25;Q5TCU3;CON__Q3SX28;A7XZE4;Q5TCU8;P07951;K7EMU5;K7EPB9;U3KQK2 Q5HYB6 166 174 DKFZp686J1372;TPM3;TPM3-ROS1;HEL-S-82p;OK/SW-cl.5;HEL-S-108;TPM4;HEL-S-273;TPM2;TPM2b Tyrosine-protein kinase receptor;Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 2 2.6944E-19 209.21 3 1 0.9932 1.2284 98.71 4 Median 0.97758 1.2077 9.735 3 0 Median 5.3259 8.3157 NaN 1 0 Median 54269000 24125000 30145000 46782000 23040000 23742000 7487400 1085100 6402300 + 2351 465;864 2410 8563;8564;8565;8566 12937;12938;12939;12940;12941;12942;12943 12940 7 EDLAAFVEELDK EVNDLKRKSPSDLWKEDLAAFVEELDKVES LWKEDLAAFVEELDKVESQEREDVLAGMSG K E D D K V 2 0 0 2 0 0 3 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 12 0 1377.6664 Q71UH4;Q02880;B4DKD0;Q59H80;B4DLV2;Q8WTY5;Q6W6M6;B7ZB27 Q71UH4 1159 1170 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 7.4028E-16 166.69 5 2 0.68075 0.91872 12.992 6 Median 0.70673 0.88844 11.651 4 0 Median 0.64861 1.0265 0.73391 2 0 Median 126970000 74892000 52081000 50543000 28782000 21761000 76430000 46110000 30320000 2352 1437 2411 8567;8568;8569;8570;8571;8572;8573 12944;12945;12946;12947;12948;12949;12950;12951;12952;12953;12954;12955;12956 12947 13 EDLAAFVEELDKVESQEREDVLAGMSGK EVNDLKRKSPSDLWKEDLAAFVEELDKVES ESQEREDVLAGMSGKAIKGKVGKPKVKKLQ K E D G K A 3 1 0 3 0 1 6 2 0 0 3 2 1 1 0 2 0 0 0 3 0 0 28 2 3093.4812 Q71UH4;Q02880;B4DKD0;Q59H80;B4DLV2;Q8WTY5;B7ZB27 Q71UH4 1159 1186 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 3 0.011345 39.048 1 0.51203 0.62372 NaN 1 Median 0.51203 0.62372 NaN 1 0 Median NaN NaN NaN 0 0 Median 2580800 1726800 853950 2580800 1726800 853950 0 0 0 2353 1437 2412 8574 12957 12957 1 EDLATFIEELEAVEAK ELDTLKRKSPSDLWKEDLATFIEELEAVEA DLATFIEELEAVEAKEKQDEQVGLPGKGGK K E D A K E 3 0 0 1 0 0 5 0 0 1 2 1 0 1 0 0 1 0 0 1 0 0 16 0 1805.8935 P11388 P11388 1169 1184 TOP2A DNA topoisomerase 2-alpha yes yes 2 1.2076E-71 273.74 4 1 0.89697 1.1931 8.5334 5 Median 0.89907 1.1893 6.1811 4 0 Median 0.87443 1.366 NaN 1 0 Median 1550000000 841710000 708290000 1450100000 775730000 674370000 99914000 65986000 33928000 2354 1256 2413 8575;8576;8577;8578;8579 12958;12959;12960;12961;12962;12963;12964 12959 7 EDLLDQLK VGHDRYLVVGRKRRKEDLLDQLKQEGQVGH VGRKRRKEDLLDQLKQEGQVGHYELVMPQA K E D L K Q 0 0 0 2 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 0 972.51278 Q6NUN2;A3F769;A3F768;O15226;A2I829 Q6NUN2 667 674 NKRF;NRF NF-kappa-B-repressing factor yes no 2 0.0013126 148.04 4 0.56816 0.72659 12.354 3 Plateau 0.56816 0.72659 12.354 3 0 Plateau NaN NaN NaN 0 0 Median 18382000 13044000 5337900 18382000 13044000 5337900 0 0 0 2355 541 2414 8580;8581;8582;8583 12965;12966;12967;12968;12969 12965 5 EDLLQEYTEQR RVQASKNPLKMLAAREDLLQEYTEQRLNVA LAAREDLLQEYTEQRLNVAFMESKRMKVEK R E D Q R L 0 1 0 1 0 2 3 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 11 0 1422.6627 O95425;B4E3N7;B4E3H1;A0A0J9YWY6;Q659E9;B4DXQ4 O95425 1372 1382 SVIL;DKFZp586H1823 Supervillin yes no 2 0.044515 63.184 1 0.99557 1.4179 NaN 1 Median 0.99557 1.4179 NaN 1 0 Median NaN NaN NaN 0 0 Median 2450300 1614600 835640 2450300 1614600 835640 0 0 0 2356 1220 2415 8584 12970 12970 1 EDLMGLAIGTHGSNIQQAR TKQLAAAFHEEFVVREDLMGLAIGTHGSNI GLAIGTHGSNIQQARKVPGVTAIELDEDTG R E D A R K 2 1 1 1 0 2 1 3 1 2 2 0 1 0 0 1 1 0 0 0 0 0 19 0 2009.9953 A0A0F7KYT8;A0A0F7L0Q8;B4DXZ6;A0A0F7L1S3;P51114;B4DM78;E7EU85;B4DGH9;E9PFF5;B4DM21 A0A0F7KYT8 227 245 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 3 0.0035999 42.068 1 0.72923 0.98308 NaN 1 Median NaN NaN NaN 0 0 Median 0.72923 0.98308 NaN 1 0 Median 5578300 2412700 3165700 0 0 0 5578300 2412700 3165700 2357 438 2416 8585 12971 12971 151 0 EDLPAENGETK GAKGKQAEVANQETKEDLPAENGETKTEES QETKEDLPAENGETKTEESPASDEAGEKEA K E D T K T 1 0 1 1 0 0 3 1 0 0 1 1 0 0 1 0 1 0 0 0 0 0 11 0 1201.5463 A6NL93;Q6NSG7;Q3B790;A6NEL0;P05114;A0A024R2A3 A6NL93 62 72 HMGN1;hCG_1979072 Non-histone chromosomal protein HMG-14 yes no 2 2.7862E-06 111.06 1 1 0.69801 0.96153 15.804 2 Median 0.8604 1.0752 NaN 1 0 Median 0.56627 0.85987 NaN 1 0 Median 29086000 16988000 12098000 16125000 8695100 7430100 12961000 8292800 4668100 2358 563 2417 8586;8587 12972;12973;12974;12975 12972 4 EDLPAENGETKTEESPASDEAGEK GAKGKQAEVANQETKEDLPAENGETKTEES TKTEESPASDEAGEKEAKSD__________ K E D E K E 3 0 1 2 0 0 7 2 0 0 1 2 0 0 2 2 2 0 0 0 0 0 24 1 2532.0987 A6NL93;Q6NSG7;Q3B790;A6NEL0;P05114;A0A024R2A3 A6NL93 62 85 HMGN1;hCG_1979072 Non-histone chromosomal protein HMG-14 yes no 3 9.3524E-47 147.02 4 2 0.84936 1.0383 18.783 6 Median 0.9066 1.1085 7.5971 4 0 Median 0.48621 0.78424 1.276 2 0 Median 377580000 221480000 156100000 252380000 134580000 117800000 125200000 86906000 38293000 2359 563 2418 8588;8589;8590;8591;8592;8593 12976;12977;12978;12979;12980;12981;12982;12983;12984;12985;12986;12987;12988 12983 13 EDLQELNDR STPLSPTRITRLQEKEDLQELNDRLAVYID TRLQEKEDLQELNDRLAVYIDRVRSLETEN K E D D R L 0 1 1 2 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1130.5204 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;W5X314 P02545 33 41 LMNA Prelamin-A/C;Lamin-A/C yes no 2 2.0902E-08 159.28 4 2 0.70717 0.95241 55.821 6 Median 0.67924 0.92077 4.7983 4 0 Median 1.6712 2.7107 6.6887 2 0 Median 276280000 136540000 139740000 149940000 90046000 59894000 126340000 46490000 79849000 2360 1229 2419 8594;8595;8596;8597;8598;8599 12989;12990;12991;12992;12993;12994;12995;12996;12997;12998;12999;13000;13001 12996 13 EDLRLPEGDLGK QDGYLSLLQDSGEVREDLRLPEGDLGKEIE EVREDLRLPEGDLGKEIEQKYDCGEEILIT R E D G K E 0 1 0 2 0 0 2 2 0 0 3 1 0 0 1 0 0 0 0 0 0 0 12 1 1340.6936 I3L397;I3L504;P63241 I3L397 110 121 EIF5A Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1 yes no 2;3 0.0012204 77.288 3 3 1.0315 1.4948 147.89 6 Median 0.29589 0.39754 12.717 3 0 Median 4.289 7.1209 18.522 3 0 Plateau 113120000 57305000 55819000 61156000 45018000 16138000 51968000 12288000 39680000 2361 1127 2420 8600;8601;8602;8603;8604;8605 13002;13003;13004;13005;13006;13007;13008 13007 7 EDLSGIAEMFK RVLNNFISNQKMDFKEDLSGIAEMFKTPVK MDFKEDLSGIAEMFKTPVKEQPQLTSTCHI K E D F K T 1 0 0 1 0 0 2 1 0 1 1 1 1 1 0 1 0 0 0 0 0 0 11 0 1238.5853 P46013;Q70L73 P46013 750 760 MKI67 Antigen KI-67 no no 2 2.2789E-05 102.06 8 1 0.86793 1.1323 14.836 7 Median 0.86581 1.0998 9.6912 6 0 Median 0.98581 1.5367 NaN 1 0 Median 233980000 116450000 117520000 93478000 44875000 48602000 140500000 71579000 68922000 2362 1342;1604 2421;2422 8606;8607;8608;8609;8610;8611;8612;8613;8614 13009;13010;13011;13012;13013;13014;13015;13016;13017;13018 13017 570 8 EDLTEIR LLPHIRGNVGFVFTKEDLTEIRDMLLANKV NVGFVFTKEDLTEIRDMLLANKVPAAARAG K E D I R D 0 1 0 1 0 0 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 7 0 874.43961 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VWS0;Q53HK9;F8VW21;F8VU65;F8VZS0;Q6NSF2;B4E3D5;G3V210;Q8NHW5;F8VQY6;F8VPE8;F8VRK7;F8VS58;F8VWV4 Q53HW2 93 99 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 0.0092691 118.69 2 0.72548 0.97624 6.6408 2 Median 0.72548 0.97624 6.6408 2 0 Median NaN NaN NaN 0 0 Median 42255000 23867000 18388000 42255000 23867000 18388000 0 0 0 2363 281 2423 8615;8616 13019;13020 13019 2 EDLTEIRDMLLANK LLPHIRGNVGFVFTKEDLTEIRDMLLANKV KEDLTEIRDMLLANKVPAAARAGAIAPCEV K E D N K V 1 1 1 2 0 0 2 0 0 1 3 1 1 0 0 0 1 0 0 0 0 0 14 1 1659.8502 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VWS0;Q53HK9;F8VW21;F8VU65;F8VZS0;Q6NSF2;B4E3D5;G3V210;Q8NHW5;F8VQY6;F8VPE8;F8VRK7;F8VS58;F8VWV4 Q53HW2 93 106 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2;3 0.00041435 101.39 1 2 0.63583 1.1322 0.53075 2 Median NaN NaN NaN 0 0 Median 0.63583 1.1322 0.53075 2 0 Median 122510000 76178000 46333000 0 0 0 122510000 76178000 46333000 2364 281 2424;2425 8617;8618;8619 13021;13022;13023 13023 111 3 EDLVVAPAGITLK EEEHDCFLEEIMTKREDLVVAPAGITLKEA KREDLVVAPAGITLKEANEILQRSKKGKLP R E D L K E 2 0 0 1 0 0 1 1 0 1 2 1 0 0 1 0 1 0 0 2 0 0 13 0 1324.7602 P12268;H0Y4R1;B7Z1G4;Q6QE17;E7ETK5 P12268 183 195 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2 2.1713E-05 109.16 3 0.37791 0.47238 9.4243 3 Median 0.37791 0.47238 9.4243 3 0 Median NaN NaN NaN 0 0 Median 15939000 11270000 4669300 15939000 11270000 4669300 0 0 0 2365 1261 2426 8620;8621;8622 13024;13025;13026 13026 3 EDLYLKPIQR LKVRIMGPNYTPGKKEDLYLKPIQRTILMM TPGKKEDLYLKPIQRTILMMGRYVEPIEDV K E D Q R T 0 1 0 1 0 1 1 0 0 1 2 1 0 0 1 0 0 0 1 0 0 0 10 1 1273.703 P13639;Q8TA90;Q6PK56;B4DRE8 P13639 440 449 EEF2 Elongation factor 2 yes no 2 0.0032842 107.01 1 1 2.3598 3.387 208.62 2 Median 0.57738 0.77477 NaN 1 0 Median 9.6448 14.807 NaN 1 0 Median 9502200 3001900 6500300 4246300 2632800 1613400 5255900 369030 4886900 2366 1264 2427 8623;8624 13027;13028;13029 13027 3 EDNIGNQLLR IQGRSAEEAYKQQIKEDNIGNQLLRKMGWT KQQIKEDNIGNQLLRKMGWTGGGLGKSGEG K E D L R K 0 1 2 1 0 1 1 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1170.5993 Q6NUN2;A3F769;A3F768;O15226;A2I829 Q6NUN2 551 560 NKRF;NRF NF-kappa-B-repressing factor yes no 2 0.037213 40.352 1 0.69302 0.92344 NaN 1 Median NaN NaN NaN 0 0 Median 0.69302 0.92344 NaN 1 0 Median 4953400 2438100 2515200 0 0 0 4953400 2438100 2515200 2367 541 2428 8625 13030 13030 1 EDPNLISVNNFEDCSLCPSVPIEHGFR ISTSEVGTDHKLHLKEDPNLISVNNFEDCS DCSLCPSVPIEHGFRRQQSKSNNVEETEIH K E D F R R 0 1 3 2 2 0 3 1 1 2 2 0 0 2 3 3 0 0 0 2 0 0 27 0 3144.4281 Q9UK61;A0A024R363;A0A087X0F1 Q9UK61 873 899 FAM208A;C3orf63 Protein FAM208A yes no 3 0.007266 71.143 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2368 1787 2429 8626 13031 13031 1 EDQLLCTDCYSNEYSSK SQCRNSLVDKPFAAKEDQLLCTDCYSNEYS QLLCTDCYSNEYSSKCQECKKTIMPGTRKM K E D S K C 0 0 1 2 2 1 2 0 0 0 2 1 0 0 0 3 1 0 2 0 0 0 17 0 2110.846 I0CE67;Q6I9R8;Q2XQU9;J3KNW4;A0A0A0MSG2;Q14192;Q2TSB7;Q53QP3 I0CE67 74 90 FHL2;AAG11 Four and a half LIM domains protein 2 yes no 2 1.1982E-43 190.37 4 0.40344 0.52457 12.476 2 Median 0.40344 0.52457 12.476 2 0 Median NaN NaN NaN 0 0 Median 7185500 4744800 2440700 7185500 4744800 2440700 0 0 0 2369 396 2430 8627;8628;8629;8630 13032;13033;13034;13035;13036;13037;13038 13035 7 EDQPAVPGETQGDSYFTGK REMEREAEYEESVAKEDQPAVPGETQGDSY AVPGETQGDSYFTGKKTIETVKAAERIMEA K E D G K K 1 0 0 2 0 2 2 3 0 0 0 1 0 1 2 1 2 0 1 1 0 0 19 0 2024.8963 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 730 748 WDR3 WD repeat-containing protein 3 yes no 2 3.9396E-11 124.81 4 2 0.78837 1.0958 8.5883 6 Median 0.83173 1.0373 7.3608 4 0 Median 0.74035 1.1837 3.2677 2 0 Median 145290000 78436000 66857000 53255000 26106000 27149000 92037000 52329000 39708000 2370 1576 2431 8631;8632;8633;8634;8635;8636 13039;13040;13041;13042;13043;13044;13045;13046;13047;13048;13049;13050;13051 13042 13 EDQPAVPGETQGDSYFTGKK REMEREAEYEESVAKEDQPAVPGETQGDSY VPGETQGDSYFTGKKTIETVKAAERIMEAI K E D K K T 1 0 0 2 0 2 2 3 0 0 0 2 0 1 2 1 2 0 1 1 0 0 20 1 2152.9913 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 730 749 WDR3 WD repeat-containing protein 3 yes no 3 1.0309E-07 100.27 4 2 0.86485 1.0857 11.219 6 Median 0.91628 1.1288 13.516 4 0 Median 0.6764 1.0799 0.20994 2 0 Median 92526000 47081000 45445000 58479000 27968000 30511000 34046000 19113000 14933000 2371 1576 2432 8637;8638;8639;8640;8641;8642 13052;13053;13054;13055;13056;13057;13058;13059;13060;13061;13062;13063 13054 12 EDQQTVLKPQFYEIK LLQQEEKVKRQERLKEDQQTVLKPQFYEIK EDQQTVLKPQFYEIKAGEEFRSFKDSATKQ K E D I K A 0 0 0 1 0 3 2 0 0 1 1 2 0 1 1 0 1 0 1 1 0 0 15 1 1864.9571 Q9BSC4;B4DS83 Q9BSC4 582 596 NOL10 Nucleolar protein 10 yes no 2;3 1.8253E-55 215.77 7 2 0.81065 1.1526 11.824 6 Median 0.86278 1.06 11.543 4 0 Median 0.77139 1.2413 2.1189 2 0 Median 197910000 111130000 86782000 111440000 61111000 50326000 86472000 50016000 36456000 2372 1710 2433 8643;8644;8645;8646;8647;8648;8649;8650;8651 13064;13065;13066;13067;13068;13069;13070;13071;13072;13073;13074;13075;13076 13067 13 EDQSILCTGESGAGK YAITDTAYRSMMQDREDQSILCTGESGAGK EDQSILCTGESGAGKTENTKKVIQYLAYVA R E D G K T 1 0 0 1 1 1 2 3 0 1 1 1 0 0 0 2 1 0 0 0 0 0 15 0 1550.6883 A0A024R1N1;P35579;Q86XU5;B4E3S1;Q5BKV1;E7ERA5;A0A0U4BW16;P35580;Q7Z406;M0QY43 A0A024R1N1 166 180 MYH9;MYH10;MYH14 Myosin-9;Myosin-10;Myosin-14 no no 2 5.3322E-74 247.13 5 1 0.94489 1.1768 20.424 4 Median 0.94489 1.1768 20.424 4 0 Median NaN NaN NaN 0 0 Median 90516000 41249000 49267000 87241000 41249000 45993000 3274400 0 3274400 2373 61;490;1320;1615 2434 8652;8653;8654;8655;8656;8657 13077;13078;13079;13080;13081;13082;13083;13084;13085 13079 9 EDQTEYLEER GEPIGRGTKVILHLKEDQTEYLEERRVKEV ILHLKEDQTEYLEERRVKEVVKKHSQFIGY K E D E R R 0 1 0 1 0 1 4 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 10 0 1310.5626 A0A024RD80;P08238;B4DMA2;B4DGL0;Q6PK50;Q58FF7;K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;G3V2J8;Q58FF6 A0A024RD80 187 196 HSP90AB1;HSP90AB3P;EL52;HSP90AA1;HSP90AB4P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4 no no 2 1.6583E-16 185.6 4 2 0.42559 0.58788 130.42 6 Median 0.40872 0.55834 7.9945 4 0 Median 4.424 6.9225 0.16125 2 0 Median 463680000 300290000 163400000 408590000 290570000 118020000 55091000 9713300 45378000 2374 312;1155;1550 2435 8658;8659;8660;8661;8662;8663 13086;13087;13088;13089;13090;13091;13092;13093;13094;13095;13096;13097;13098 13091 13 EDSAVFYELK GRAGKSGVAITFLTKEDSAVFYELKQAILE TFLTKEDSAVFYELKQAILESPVSSCPPEL K E D L K Q 1 0 0 1 0 0 2 0 0 0 1 1 0 1 0 1 0 0 1 1 0 0 10 0 1199.571 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56 B3KY11 751 760 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.0043554 64.654 2 0.51531 0.64702 5.4245 2 Median 0.51531 0.64702 5.4245 2 0 Median NaN NaN NaN 0 0 Median 15634000 9778000 5855900 15634000 9778000 5855900 0 0 0 2375 45 2436 8664;8665 13099;13100;13101 13101 3 EDSGSVPSTGPSQGTPISLK PCQWSYVTSVPSAPKEDSGSVPSTGPSQGT VPSTGPSQGTPISLKRKSAGSMCITQFMKK K E D L K R 0 0 0 1 0 1 1 3 0 1 1 1 0 0 3 5 2 0 0 1 0 0 20 0 1942.9484 D6W625;Q13111 D6W625 851 870 CHAF1A Chromatin assembly factor 1 subunit A yes no 2 1.3579E-05 113.69 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 878190 878190 0 878190 878190 0 0 0 0 2376 997 2437 8666 13102 13102 1 EDSQRPGAHLTVK KVDGRVVEPKRAVSREDSQRPGAHLTVKKI SREDSQRPGAHLTVKKIFVGGIKEDTEEHH R E D V K K 1 1 0 1 0 1 1 1 1 0 1 1 0 0 1 1 1 0 0 1 0 0 13 1 1436.7372 F8W6I7;A0A024RB53;A0A024RAZ7;P09651;Q0VAC0;Q6IPF2;A0A024RC46;F8VZ49;Q9BSM5;A0A024QZ98;Q32P51;B4DP35;F8VYN5;F8W646 F8W6I7 93 105 HNRNPA1;HNRPA1;hCG_2020860;RP11-78J21.1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2;3 2.8317E-08 141.71 4 0.24907 0.33209 8.6783 2 Median 0.24907 0.33209 8.6783 2 0 Median NaN NaN NaN 0 0 Median 74425000 69427000 4997800 74425000 69427000 4997800 0 0 0 2377 253 2438 8667;8668;8669;8670 13103;13104;13105;13106;13107 13104 5 EDSVKPGAHLTVK KVDGRVVEPKRAVSREDSVKPGAHLTVKKI SREDSVKPGAHLTVKKIFVGGIKEDTEEYN R E D V K K 1 0 0 1 0 0 1 1 1 0 1 2 0 0 1 1 1 0 0 2 0 0 13 1 1379.7409 B4E3E6;B4DDB6;P51991;Q65ZQ3 B4E3E6 92 104 HNRPA3;HNRNPA3;D10S102 Heterogeneous nuclear ribonucleoprotein A3 yes no 2;3 0.0032637 89.171 2 0.39686 0.48965 16.957 2 Median 0.39686 0.48965 16.957 2 0 Median NaN NaN NaN 0 0 Median 15072000 10861000 4210400 15072000 10861000 4210400 0 0 0 2378 793 2439 8671;8672 13108;13109 13108 2 EDTEEYNLR GAHLTVKKIFVGGIKEDTEEYNLRDYFEKY FVGGIKEDTEEYNLRDYFEKYGKIETIEVM K E D L R D 0 1 1 1 0 0 3 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 9 0 1167.5044 B4E3E6;B4DDB6;P51991;Q65ZQ3 B4E3E6 113 121 HNRPA3;HNRNPA3;D10S102 Heterogeneous nuclear ribonucleoprotein A3 yes no 2 5.6512E-15 163.67 4 0.33559 0.44398 NaN 1 Median 0.33559 0.44398 NaN 1 0 Median NaN NaN NaN 0 0 Median 13889000 11127000 2762500 13889000 11127000 2762500 0 0 0 2379 793 2440 8673;8674;8675;8676 13110;13111;13112;13113;13114 13110 5 EDTEEYNLRDYFEK GAHLTVKKIFVGGIKEDTEEYNLRDYFEKY KEDTEEYNLRDYFEKYGKIETIEVMEDRQS K E D E K Y 0 1 1 2 0 0 4 0 0 0 1 1 0 1 0 0 1 0 2 0 0 0 14 1 1849.8006 B4E3E6;B4DDB6;P51991;Q65ZQ3 B4E3E6 113 126 HNRPA3;HNRNPA3;D10S102 Heterogeneous nuclear ribonucleoprotein A3 yes no 2 0.00015028 121.02 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1813900 1813900 0 1813900 1813900 0 0 0 0 2380 793 2441 8677;8678 13115;13116 13116 2 EDTFFYSLVYDPSLK ALLNETESVLSYLDKEDTFFYSLVYDPSLK EDTFFYSLVYDPSLKTLLADKGEIRVGPRY K E D L K T 0 0 0 2 0 0 1 0 0 0 2 1 0 2 1 2 1 0 2 1 0 0 15 0 1822.8665 E7EQY4;E7EV10;Q9BTC8;E9PCS8;D6W5A2;Q53RX8 E7EQY4 127 141 MTA3;tmp_locus_6 Metastasis-associated protein MTA3 yes no 2 5.9388E-10 140.63 3 0.79921 1.0219 25.929 3 Plateau 0.79921 1.0219 25.929 3 0 Plateau NaN NaN NaN 0 0 Median 11498000 7045600 4452700 11498000 7045600 4452700 0 0 0 2381 1012 2442 8679;8680;8681 13117;13118;13119;13120 13117 4 EDTLEFLIK YSILHHFRSIDPGLKEDTLEFLIKVVSRHS IDPGLKEDTLEFLIKVVSRHSQELPAILDD K E D I K V 0 0 0 1 0 0 2 0 0 1 2 1 0 1 0 0 1 0 0 0 0 0 9 0 1106.5859 B3KMS0;A0PJ76 B3KMS0 79 87 NCAPD2 Condensin complex subunit 1 yes no 2 1.8203E-05 148.04 4 2 0.71448 0.90194 15.129 6 Median 0.73582 0.92536 3.3676 4 0 Median 0.43406 0.69231 4.0278 2 0 Median 259220000 163500000 95714000 146900000 84312000 62584000 112320000 79192000 33129000 2382 757 2443 8682;8683;8684;8685;8686;8687 13121;13122;13123;13124;13125;13126;13127;13128;13129;13130;13131;13132 13125 12 EDTQTLQSLQK PLEKEAVGQLKPTGKEDTQTLQSLQKENQE PTGKEDTQTLQSLQKENQELMKSLEGNLET K E D Q K E 0 0 0 1 0 3 1 0 0 0 2 1 0 0 0 1 2 0 0 0 0 0 11 0 1289.6463 D3DVC4;P48681 D3DVC4 620 630 NES Nestin yes no 2 0.012672 79.489 2 0.50699 0.65547 NaN 1 Median 0.50699 0.65547 NaN 1 0 Median NaN NaN NaN 0 0 Median 2627700 2359700 268030 2627700 2359700 268030 0 0 0 2383 986 2444 8688;8689 13133;13134 13133 2 EDVATWQQSSLSLR RALGKNSELLVVSAREDVATWQQSSLSLRW REDVATWQQSSLSLRWASRLRAPTSTEANH R E D L R W 1 1 0 1 0 2 1 0 0 0 2 0 0 0 0 3 1 1 0 1 0 0 14 0 1618.7951 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 654 667 NOP14 Nucleolar protein 14 yes no 2 0.00024552 86.114 1 0.58148 0.76216 NaN 1 Median NaN NaN NaN 0 0 Median 0.58148 0.76216 NaN 1 0 Median 5310200 3618100 1692200 0 0 0 5310200 3618100 1692200 2384 652 2445 8690 13135 13135 1 EDVFVHQTAIK PSRADLEKDSWNDTKEDVFVHQTAIKKNNP NDTKEDVFVHQTAIKKNNPRKYLRSVGDGE K E D I K K 1 0 0 1 0 1 1 0 1 1 0 1 0 1 0 0 1 0 0 2 0 0 11 0 1285.6667 H0Y449;P67809;Q6PKI6;Q7KZ24;A0A0D9SEI8;Q59EB5;A0A024RAV4;B2RCC2;A0A024RAQ1;Q9Y2T7;P16989;Q96GD7 H0Y449 132 142 YBX1;YBX3;CSDA;YBX2 Nuclease-sensitive element-binding protein 1;Y-box-binding protein 2;Y-box-binding protein 3 yes no 2 4.208E-34 223.87 4 3 0.89103 1.1205 3.9229 4 Median 0.89103 1.1205 3.9229 4 0 Median NaN NaN NaN 0 0 Median 92385000 57850000 34535000 77057000 42522000 34535000 15328000 15328000 0 2385 1089 2446 8691;8692;8693;8694;8695;8696;8697 13136;13137;13138;13139;13140;13141;13142;13143 13136 8 EDYSFTAYATISYLK LEKIIAHFLIQQYLKEDYSFTAYATISYLK EDYSFTAYATISYLKIGPKANLLNNEAHAI K E D L K I 2 0 0 1 0 0 1 0 0 1 1 1 0 1 0 2 2 0 3 0 0 0 15 0 1770.8352 A0A024RAV2;P46063 A0A024RAV2 557 571 RECQL ATP-dependent DNA helicase Q1 yes no 2 4.4654E-07 105.2 4 0.474 0.59532 42.262 3 Plateau 0.474 0.59532 42.262 3 0 Plateau NaN NaN NaN 0 0 Median 23702000 18642000 5059200 23702000 18642000 5059200 0 0 0 2386 250 2447 8698;8699;8700;8701 13144;13145;13146;13147 13146 4 EEAAEHIPLLFFAFPSAK ______________________________ AEHIPLLFFAFPSAKDPTWEDRFPGRSTMI R E E A K D 4 0 0 0 0 0 3 0 1 1 2 1 0 3 2 1 0 0 0 0 0 0 18 0 2016.0357 I0EZ74;H7C3J0;B4DKE1;Q6NUM9;H7BZ81 I0EZ74 10 27 RETSAT All-trans-retinol 13,14-reductase yes no 3 3.0151E-05 56.039 3 0.47918 0.58645 32.952 3 Median 0.47918 0.58645 32.952 3 0 Median NaN NaN NaN 0 0 Median 14542000 9709600 4832700 14542000 9709600 4832700 0 0 0 2387 819 2448 8702;8703;8704 13148;13149;13150;13151;13152 13150 5 EEAEETNVLPK EEDDSLVDVYYREGKEEAEETNVLPKEKQT REGKEEAEETNVLPKEKQTKPAEAPRLQLS K E E P K E 1 0 1 0 0 0 4 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 11 0 1257.6089 Q14690;B4DH82 Q14690 1509 1519 PDCD11 Protein RRP5 homolog yes no 2 0.020176 68.846 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3355900 0 3355900 0 0 0 3355900 0 3355900 2388 1494 2449 8705;8706 13153;13154 13154 2 EEAENTLQSFR IMRLREKLQEEMLQREEAENTLQSFRQDVD MLQREEAENTLQSFRQDVDNASLARLDLER R E E F R Q 1 1 1 0 0 1 3 0 0 0 1 0 0 1 0 1 1 0 0 0 0 0 11 0 1322.6103 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;B0YJC5;Q5JVS8 V9HWE1 197 207 HEL113;VIM Vimentin yes no 2 1.1422E-28 182.39 4 1 0.72649 0.99049 22.46 5 Median 0.71588 0.97687 4.5863 4 0 Median 1.0411 1.6147 NaN 1 0 Median 178620000 100760000 77854000 157890000 91033000 66857000 20728000 9730400 10997000 2389 1245 2450 8707;8708;8709;8710;8711 13155;13156;13157;13158;13159;13160 13157 6 EEAENTLQSFRQDVDNASLAR IMRLREKLQEEMLQREEAENTLQSFRQDVD LQSFRQDVDNASLARLDLERKVESLQEEIA R E E A R L 3 2 2 2 0 2 3 0 0 0 2 0 0 1 0 2 1 0 0 1 0 0 21 1 2392.1255 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;B0YJC5;Q5JVS8 V9HWE1 197 217 HEL113;VIM Vimentin yes no 3 3.278E-17 110.37 4 0.76545 1.0392 4.1722 4 Median 0.76545 1.0392 4.1722 4 0 Median NaN NaN NaN 0 0 Median 49329000 28520000 20809000 49329000 28520000 20809000 0 0 0 2390 1245 2451 8712;8713;8714;8715 13161;13162;13163;13164;13165;13166;13167;13168;13169 13169 9 EEAETPAEATGKPQR QNSWKKRQVFKSLCREEAETPAEATGKPQR EEAETPAEATGKPQRDEAGPQRQLPALDGS R E E Q R D 3 1 0 0 0 1 4 1 0 0 0 1 0 0 2 0 2 0 0 0 0 0 15 1 1612.7693 Q8N9T8;A0A024R7C4;B4DUT2 Q8N9T8 593 607 KRI1;FLJ12949 Protein KRI1 homolog yes no 2;3 7.1377E-06 127.52 5 3 0.70033 1.008 17.228 8 Median 0.84953 1.076 21.68 5 0 Median 0.64085 0.95155 9.6098 3 0 Median 17728000 10302000 7426700 8252800 4593300 3659600 9475500 5708400 3767100 2391 1645 2452 8716;8717;8718;8719;8720;8721;8722;8723 13170;13171;13172;13173;13174;13175;13176;13177;13178;13179;13180;13181 13176 12 EEAGGEAAAAAAAER PPPPSELKKAEQQQREEAGGEAAAAAAAER EEAGGEAAAAAAAERGEMKAAAGQESEGPA R E E E R G 8 1 0 0 0 0 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 0 1372.6219 A0A0S2Q0B1;O14497 A0A0S2Q0B1 33 47 ARID1A AT-rich interactive domain-containing protein 1A yes no 2 0.015116 29.937 1 1.5978 2.0104 NaN 1 Median NaN NaN NaN 0 0 Median 1.5978 2.0104 NaN 1 0 Median 1703800 570070 1133700 0 0 0 1703800 570070 1133700 2392 447 2453 8724 13182 13182 1 EEAGGLLQCPEVAK SLPGDFKQEEVGGVKEEAGGLLQCPEVAKA KEEAGGLLQCPEVAKADRWLEDSRHCCSTA K E E A K A 2 0 0 0 1 1 3 2 0 0 2 1 0 0 1 0 0 0 0 1 0 0 14 0 1499.729 Q7Z5J4;A8MXE8 Q7Z5J4 820 833 RAI1 Retinoic acid-induced protein 1 yes no 2 3.529E-05 111.52 1 0.8574 1.1266 NaN 1 Median 0.8574 1.1266 NaN 1 0 Median NaN NaN NaN 0 0 Median 2547900 1239400 1308500 2547900 1239400 1308500 0 0 0 2393 1617 2454 8725 13183 13183 1 EEAIEHNYGGHDDDLSVR KWCKFDDDVVSRCTKEEAIEHNYGGHDDDL IEHNYGGHDDDLSVRHCTNAYMLVYIRESK K E E V R H 1 1 1 3 0 0 3 2 2 1 1 0 0 0 0 1 0 0 1 1 0 0 18 0 2054.893 Q6U8A4;Q93009;B7ZAX6;B7Z855;H3BND8;B7Z7T5;F5H2X1;B7Z842 Q6U8A4 501 518 USP7 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 7 yes no 3 1.15E-11 125.41 2 0.5114 0.69639 1.2746 2 Median 0.5114 0.69639 1.2746 2 0 Median NaN NaN NaN 0 0 Median 19444000 12382000 7061900 19444000 12382000 7061900 0 0 0 2394 1600 2455 8726;8727 13184;13185 13184 2 EEAPASPLRPLYPQISPLK ______________________________ ASPLRPLYPQISPLKIHIPEPDLRSMVSPV K E E L K I 2 1 0 0 0 1 2 0 0 1 3 1 0 0 5 2 0 0 1 0 0 0 19 1 2105.1521 U3KQ26;B4DY33;A4D1Z4;P85037 U3KQ26 15 33 FOXK1;KIAA0415 Forkhead box protein K1 yes no 3 0.026739 18.455 1 0.42963 0.5528 NaN 1 Median 0.42963 0.5528 NaN 1 0 Median NaN NaN NaN 0 0 Median 5571800 2998700 2573100 5571800 2998700 2573100 0 0 0 2395 551 2456 8728 13186 13186 1 EEAQALEDLTGFK TENLTGSKRRPQTPKEEAQALEDLTGFKEL PKEEAQALEDLTGFKELFQTPGHTEEAVAA K E E F K E 2 0 0 1 0 1 3 1 0 0 2 1 0 1 0 0 1 0 0 0 0 0 13 0 1449.6987 P46013 P46013 1338 1350 MKI67 Antigen KI-67 yes yes 2 1.3724E-32 208.84 7 2 0.91638 1.2084 15.13 8 Median 0.90468 1.1737 6.4314 6 0 Median 1.0079 1.5907 9.5458 2 0 Median 1177400000 627270000 550120000 760820000 414010000 346810000 416570000 213260000 203310000 2396 1342 2457 8729;8730;8731;8732;8733;8734;8735;8736;8737 13187;13188;13189;13190;13191;13192;13193;13194;13195;13196;13197;13198;13199;13200;13201;13202;13203;13204;13205;13206;13207;13208;13209 13190 23 EEAQSLEDLAGFK AARVTGMKKWPRTPKEEAQSLEDLAGFKEL PKEEAQSLEDLAGFKELFQTPGPSEESMTD K E E F K E 2 0 0 1 0 1 3 1 0 0 2 1 0 1 0 1 0 0 0 0 0 0 13 0 1435.6831 P46013 P46013 1094 1106 MKI67 Antigen KI-67 yes no 2 6.9642E-30 204.69 7 2 0.94223 1.2454 15.253 7 Median 0.92925 1.2291 6.6858 5 0 Median 1.0274 1.6181 1.4409 2 0 Median 1933900000 1013700000 920270000 1190200000 638040000 552160000 743730000 375620000 368100000 2397 1342 2458 8738;8739;8740;8741;8742;8743;8744;8745;8746 13210;13211;13212;13213;13214;13215;13216;13217;13218;13219;13220;13221;13222;13223;13224;13225;13226;13227;13228;13229;13230;13231;13232;13233;13234;13235;13236;13237 13219 27 EEASDLLLNKK SWRKFVARKKYVQMREEASDLLLNKKERRR VQMREEASDLLLNKKERRRNSINRNFIGDY R E E K K E 1 0 1 1 0 0 2 0 0 0 3 2 0 0 0 1 0 0 0 0 0 0 11 1 1258.6769 Q4KMR3;Q12965;H0YNQ8 Q4KMR3 720 730 MYO1E Unconventional myosin-Ie yes no 2 0.0001012 128.6 3 0.55877 0.68351 11.883 2 Median 0.55877 0.68351 11.883 2 0 Median NaN NaN NaN 0 0 Median 32175000 16969000 15206000 32175000 16969000 15206000 0 0 0 2398 1459 2459 8747;8748;8749 13238;13239;13240;13241 13241 4 EEDGSLSLDGADSTGVVAK EEWSCSLCHVLPDLKEEDGSLSLDGADSTG SLSLDGADSTGVVAKLSPANQRKCERVLLA K E E A K L 2 0 0 3 0 0 2 3 0 0 2 1 0 0 0 3 1 0 0 2 0 0 19 0 1848.8589 B2R8R5;Q13263;M0R0K9 B2R8R5 677 695 TRIM28 Transcription intermediary factor 1-beta yes no 2 5.1261E-06 59.898 2 1.2859 1.6556 22.906 2 Median 1.2859 1.6556 22.906 2 0 Median NaN NaN NaN 0 0 Median 5228600 2670700 2557900 5228600 2670700 2557900 0 0 0 2399 716 2460 8750;8751 13242;13243;13244 13243 3 EEDPATGTGDPPR GQRVYLHLRRTRRPKEEDPATGTGDPPRKK PKEEDPATGTGDPPRKKPTRLAIGVEGGFD K E E P R K 1 1 0 2 0 0 2 2 0 0 0 0 0 0 3 0 2 0 0 0 0 0 13 0 1340.5844 A0A140VJZ1;P45974;F5H571 A0A140VJZ1 81 93 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 0.011054 86.189 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 416760 416760 0 416760 416760 0 0 0 0 2400 505 2461 8752 13245 13245 1 EEDTSNTTFGPADLK LMAEMHVVLLKAVLREEDTSNTTFGPADLK EEDTSNTTFGPADLKDSVNSTLYFIDGMTW R E E L K D 1 0 1 2 0 0 2 1 0 0 1 1 0 1 1 1 3 0 0 0 0 0 15 0 1623.7264 E7ETD6;Q12830;F5GXF5;A0A0A0MR81;B4DDK2;B4DM40 E7ETD6 158 172 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.039909 27.681 1 0.94406 1.2615 NaN 1 Median NaN NaN NaN 0 0 Median 0.94406 1.2615 NaN 1 0 Median 3337400 1671500 1666000 0 0 0 3337400 1671500 1666000 2401 1015 2462 8753 13246 13246 1 EEEEEEEEDQEGDRETTIR RLKPPAGWKADLLQREEEEEEEEDQEGDRE EEEEDQEGDRETTIRGKATPAEEEKTGKVK R E E I R G 0 2 0 2 0 1 10 1 0 1 0 0 0 0 0 0 2 0 0 0 0 0 19 1 2350.9521 Q15269;A0A0B4J2E5 Q15269 240 258 PWP2 Periodic tryptophan protein 2 homolog yes no 3 1.8377E-46 128.69 1 2 0.64125 0.9746 12.627 3 Plateau 0.64125 0.84114 NaN 1 0 Median 0.65868 0.9746 13.203 2 0 Median 27965000 15875000 12090000 1166800 571060 595760 26799000 15304000 11495000 2402 1508 2463 8754;8755;8756 13247;13248;13249;13250;13251 13251 5 EEEEEVFESSVPQR FQARVSRQTLLALEKEEEEEVFESSVPQRS KEEEEEVFESSVPQRSTLAELKSKGKKTAR K E E Q R S 0 1 0 0 0 1 6 0 0 0 0 0 0 1 1 2 0 0 0 2 0 0 14 0 1692.7479 O60566;H0YMK5 O60566 211 224 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes no 2 3.4696E-06 135.99 3 1 0.582 0.86853 NaN 1 Median NaN NaN NaN 0 0 Median 0.582 0.86853 NaN 1 0 Median 8017800 4629400 3388400 1174400 1174400 0 6843400 3455000 3388400 2403 1191 2464 8757;8758;8759;8760 13252;13253;13254;13255 13254 4 EEEEFNTGPLSVLTQSVK NKPKSEMTPEELQKREEEEFNTGPLSVLTQ EFNTGPLSVLTQSVKNNTQVLINCRNNKKL R E E V K N 0 0 1 0 0 1 4 1 0 0 2 1 0 1 1 2 2 0 0 2 0 0 18 0 2005.9844 P62316;K7ERG4 P62316 20 37 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 2 0.0052541 43.382 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5520800 0 5520800 5520800 0 5520800 0 0 0 2404 1408 2465 8761;8762 13256;13257 13256 2 EEEEGISQESSEEEQ TPGRKPRGRPKKLEKEEEEGISQESSEEEQ EEEEGISQESSEEEQ_______________ K E E E Q - 0 0 0 0 0 2 8 1 0 1 0 0 0 0 0 3 0 0 0 0 0 0 15 0 1737.6701 Q5T6U8;Q6ZP45;P17096 P17096 93 107 HMGA1 High mobility group protein HMG-I/HMG-Y no no 2 3.836E-28 183.03 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12633000 0 0 12633000 0 0 0 0 0 2405 1275;1570 2466 8763;8764 13258;13259 13259 2 EEEGTGVVHQAPYFGAEDYR KENGAFTVLVDNYVKEEEGTGVVHQAPYFG GVVHQAPYFGAEDYRVCMDFNIIRKDSLPV K E E Y R V 2 1 0 1 0 1 4 3 1 0 0 0 0 1 1 0 1 0 2 2 0 0 20 0 2252.9974 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z355;Q7Z3U5;Q6P0M4 Q59G75 332 351 IARS;DKFZp686L17145;DKFZp686L0869 Isoleucine--tRNA ligase, cytoplasmic yes no 3 4.5917E-07 93.115 2 1 0.61999 0.82369 6.3854 2 Median 0.61999 0.82369 6.3854 2 0 Median NaN NaN NaN 0 0 Median 23322000 11517000 11805000 18950000 11517000 7433200 4371900 0 4371900 2406 1334 2467 8765;8766;8767 13260;13261;13262;13263;13264;13265 13264 6 EEEIAALVIDNGSGMCK ______________________________ EIAALVIDNGSGMCKAGFAGDDAPRAVFPS M E E C K A 2 0 1 1 1 0 3 2 0 2 1 1 1 0 0 1 0 0 0 1 0 0 17 0 1834.8441 P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 P63261 2 18 ACTG1 Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed yes no 2 4.4483E-30 141.58 9 0.77605 0.97765 12.28 7 Median 0.77605 0.97765 12.28 7 0 Median NaN NaN NaN 0 0 Median 87277000 49158000 38119000 87277000 49158000 38119000 0 0 0 2407 1420 2468;2469 8768;8769;8770;8771;8772;8773;8774;8775;8776 13266;13267;13268;13269;13270;13271;13272;13273;13274;13275;13276;13277 13277 623 11 EEEIITLQQFLR DAAGKVLDRWAIMSREEEIITLQQFLRFGE MSREEEIITLQQFLRFGETKSIVELMAIQE R E E L R F 0 1 0 0 0 2 3 0 0 2 2 0 0 1 0 0 1 0 0 0 0 0 12 0 1517.809 B4E3J2;F5H586;Q5H9S4;H0Y6W5;D3DRJ1;B4DR27;B1APH0;Q6ZN30;Q06HB9;A0A1B0GX98;Q06HC2;Q06HC3;Q06HC1;Q06HC4 B4E3J2 65 76 BNC2;DKFZp686A01127;hCG_27250 Zinc finger protein basonuclin-2 yes no 2 0.0006207 70.399 2 2.0832 2.6848 NaN 1 Median NaN NaN NaN 0 0 Median 2.0832 2.6848 NaN 1 0 Median 6685000 2576400 4108600 0 0 0 6685000 2576400 4108600 2408 677 2470 8777;8778 13278;13279 13278 2 EEELNAIR VEELLETGLIQVATKEEELNAIRTENSSLT LIQVATKEEELNAIRTENSSLTKEVQDLKA K E E I R T 1 1 1 0 0 0 3 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 972.48762 A0A024R663;Q86UP2;G3V4Y7;H0YJZ8 A0A024R663 762 769 KTN1 Kinectin yes no 2 0.012971 66.993 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2866400 2866400 0 0 0 0 2866400 2866400 0 2409 155 2471 8779 13280 13280 1 EEFDRLDSSAVLDTGK LCCRHDKVEDALNLKEEFDRLDSSAVLDTG EFDRLDSSAVLDTGKYVGLVRVLAKHGKLQ K E E G K Y 1 1 0 3 0 0 2 1 0 0 2 1 0 1 0 2 1 0 0 1 0 0 16 1 1780.8479 E5KNY5;P42704;B4DSR0 E5KNY5 735 750 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 3 0.0034717 65.511 1 0.37333 0.50576 NaN 1 Median 0.37333 0.50576 NaN 1 0 Median NaN NaN NaN 0 0 Median 6911300 4184400 2727000 6911300 4184400 2727000 0 0 0 2410 1001 2472 8780 13281 13281 1 EEGDEEGEGDEAEDEEQRGPELK QNAAKASRKKLKRVREEGDEEGEGDEAEDE GDEAEDEEQRGPELKQASRRDMYTICQSAG R E E L K Q 1 1 0 3 0 1 10 4 0 0 1 1 0 0 1 0 0 0 0 0 0 0 23 1 2575.0318 Q7KZ85 Q7KZ85 494 516 SUPT6H Transcription elongation factor SPT6 yes yes 3 0.028517 15.506 1 0.77236 0.99618 NaN 1 Median 0.77236 0.99618 NaN 1 0 Median NaN NaN NaN 0 0 Median 4694200 2016800 2677400 4694200 2016800 2677400 0 0 0 2411 1609 2473 8781 13282 13282 1 EEGETADTVGCCSLR LYFIDKLALRAGNEKEEGETADTVGCCSLR EEGETADTVGCCSLRVEHINLHPELDGQEY K E E L R V 1 1 0 1 2 0 3 2 0 0 1 0 0 0 0 1 2 0 0 1 0 0 15 0 1682.6876 P11387;B9EG90 P11387 494 508 TOP1 DNA topoisomerase 1 yes no 2 2.0855E-33 196.67 5 2 0.72032 1.0171 3.6515 6 Median 0.73208 0.99995 1.7602 4 0 Median 0.65484 1.071 0.043036 2 0 Median 765600000 450270000 315330000 563920000 325590000 238320000 201680000 124680000 77005000 2412 1255 2474 8782;8783;8784;8785;8786;8787;8788 13283;13284;13285;13286;13287;13288;13289;13290;13291;13292;13293;13294;13295;13296;13297;13298 13288 16 EEGEVPASAFQK GLLVARGKLHVLLFKEEGEVPASAFQKAPE LFKEEGEVPASAFQKAPEPLGPADQSELGP K E E Q K A 2 0 0 0 0 1 3 1 0 0 0 1 0 1 1 1 0 0 0 1 0 0 12 0 1290.6092 Q969G5 Q969G5 129 140 PRKCDBP Protein kinase C delta-binding protein yes yes 2 0.00012502 81.338 1 0.74733 0.929 NaN 1 Median 0.74733 0.929 NaN 1 0 Median NaN NaN NaN 0 0 Median 8247900 4497500 3750400 8247900 4497500 3750400 0 0 0 2413 1678 2475 8789 13299 13299 1 EEGIENFDVYAIKPGHPLQPDFFLDEYPEAVSK KSFTGNFVIDENILKEEGIENFDVYAIKPG QPDFFLDEYPEAVSKKVESTGAVPEFKEEK K E E S K K 2 0 1 3 0 1 5 2 1 2 2 2 0 3 4 1 0 0 2 2 0 0 33 1 3792.8199 B2R923;A0A024R159;Q6YN16;B4DWC7;B4E136 B2R923 178 210 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 4 0.024178 13.845 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4895900 3886900 1009000 4895900 3886900 1009000 0 0 0 2414 51 2476 8790 13300 13300 1 EEGPYEVEVTYDGVPVPGSPFPLEAVAPTKPSK PGLGADNSVVRFLPREEGPYEVEVTYDGVP SPFPLEAVAPTKPSKVKAFGPGLQGGSAGS R E E S K V 2 0 0 1 0 0 5 3 0 0 1 2 0 1 7 2 2 0 2 5 0 0 33 1 3484.729 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 1037 1069 FLNA Filamin-A yes no 3 1.1181E-54 160.93 4 0.73779 0.90802 7.4031 4 Median 0.73779 0.90802 7.4031 4 0 Median NaN NaN NaN 0 0 Median 97067000 56401000 40667000 97067000 56401000 40667000 0 0 0 2415 1287 2477 8791;8792;8793;8794 13301;13302;13303;13304;13305;13306;13307;13308;13309 13303 9 EEIDPDEEESAK SGPNTQNEDIEKEVKEEIDPDEEESAKKKH EVKEEIDPDEEESAKKKHLDKKRKLKEMFD K E E A K K 1 0 0 2 0 0 5 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 12 0 1389.5783 Q14692 Q14692 811 822 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.00013957 105.98 2 2 0.79525 1.1971 5.2897 2 Median NaN NaN NaN 0 0 Median 0.79525 1.1971 5.2897 2 0 Median 25709000 14693000 11016000 2390500 2390500 0 23319000 12303000 11016000 2416 1495 2478 8795;8796;8797;8798 13310;13311;13312;13313;13314;13315 13314 6 EEIDQENDELKR LQKKQKAYNKILREKEEIDQENDELKRQIK REKEEIDQENDELKRQIKRLTSGLQGKPLT K E E K R Q 0 1 1 2 0 1 4 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 12 1 1516.7005 J3KNF5;O15078 J3KNF5 1843 1854 CEP290 Centrosomal protein of 290 kDa yes no 3 0.0029681 39.266 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1010700000 1010700000 0 1010700000 1010700000 0 0 0 0 2417 1132 2479 8799 13316 13316 1 EEIEASNIDNVVLDEDR DEDQWEDGAEDILEKEEIEASNIDNVVLDE IEASNIDNVVLDEDRSGARRLQNLWRDQRE K E E D R S 1 1 2 3 0 0 4 0 0 2 1 0 0 0 0 1 0 0 0 2 0 0 17 0 1958.9069 B4DZJ7;O00267;M0QYL9 B4DZJ7 81 97 SUPT5H Transcription elongation factor SPT5 yes no 2 2.8243E-06 73.927 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1769800 0 1769800 1769800 0 1769800 0 0 0 2418 879 2480 8800;8801 13317;13318 13318 2 EEIGNVQLEK EKTVQDLKQEIKALKEEIGNVQLEKAQQLS IKALKEEIGNVQLEKAQQLSITSKVQELQN K E E E K A 0 0 1 0 0 1 3 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1157.5928 A0A024R663;Q86UP2;G3V4Y7;H0YJZ8;G3V5G2 A0A024R663 843 852 KTN1 Kinectin yes no 2 0.014357 57.55 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2537200 2537200 0 0 0 0 2537200 2537200 0 2419 155 2481 8802 13319 13319 1 EEIIPVAAEYDK EQQKEFQATARKFAREEIIPVAAEYDKTGE FAREEIIPVAAEYDKTGEYPVPLIRRAWEL R E E D K T 2 0 0 1 0 0 3 0 0 2 0 1 0 0 1 0 0 0 1 1 0 0 12 0 1375.6871 A0A0S2Z366;Q5T4U5;Q5HYG7;P11310;B7Z9I1;B4DWX6;E9PJM9;E9PRX4 A0A0S2Z366 58 69 ACADM;DKFZp686M24262 Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.045841 39.918 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3228200 0 3228200 0 0 0 3228200 0 3228200 2420 449 2482 8803 13320 13320 1 EEILAQAK MKDCMRELDDTRASREEILAQAKENEKKLK DDTRASREEILAQAKENEKKLKSMEAEMIQ R E E A K E 2 0 0 0 0 1 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 8 0 900.49165 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1662 1669 MYH9;FLJ00279 Myosin-9 no no 2 0.009154 107.32 2 1 1.2467 1.6234 NaN 1 Median 1.2467 1.6234 NaN 1 0 Median NaN NaN NaN 0 0 Median 19197000 8172100 11025000 13955000 8172100 5782800 5242200 0 5242200 2421 61;490 2483 8804;8805;8806 13321;13322;13323 13323 3 EEIQETQTPTHSR KDDEIVFKQPISCVKEEIQETQTPTHSRKK VKEEIQETQTPTHSRKKRRRSSNQ______ K E E S R K 0 1 0 0 0 2 3 0 1 1 0 0 0 0 1 1 3 0 0 0 0 0 13 0 1554.7274 Q9BYG3;H7BZL0 Q9BYG3 272 284 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2;3 3.4904E-78 267.07 8 4 0.91577 1.2749 4.8739 12 Median 0.9588 1.3208 5.3338 8 0 Median 0.77507 1.2424 3.6098 4 0 Median 590390000 320240000 270160000 387470000 205350000 182120000 202920000 114890000 88033000 2422 1726 2484 8807;8808;8809;8810;8811;8812;8813;8814;8815;8816;8817;8818 13324;13325;13326;13327;13328;13329;13330;13331;13332;13333;13334;13335;13336;13337;13338;13339;13340;13341;13342;13343;13344;13345 13326 22 EEIQETQTPTHSRK KDDEIVFKQPISCVKEEIQETQTPTHSRKK KEEIQETQTPTHSRKKRRRSSNQ_______ K E E R K K 0 1 0 0 0 2 3 0 1 1 0 1 0 0 1 1 3 0 0 0 0 0 14 1 1682.8224 Q9BYG3;H7BZL0 Q9BYG3 272 285 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 3 0.0010657 79.875 1 1.0387 1.4396 NaN 1 Median 1.0387 1.4396 NaN 1 0 Median NaN NaN NaN 0 0 Median 2113100 1065200 1047900 2113100 1065200 1047900 0 0 0 2423 1726 2485 8819 13346;13347 13346 2 EEIQSSISGVTAAYNR DEPPNFVQNSMQLSREEIQSSISGVTAAYN EIQSSISGVTAAYNREQLWLANEGLITRLQ R E E N R E 2 1 1 0 0 1 2 1 0 2 0 0 0 0 0 3 1 0 1 1 0 0 16 0 1723.8377 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;Q6P1N4;H0YLE8;B4E2M0;A0A087WWP1 A4QPB0 723 738 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 1.3606E-24 170.66 4 0.65319 0.88677 24.473 3 Plateau 0.65319 0.88677 24.473 3 0 Plateau NaN NaN NaN 0 0 Median 20729000 13518000 7211000 20729000 13518000 7211000 0 0 0 2424 287 2486 8820;8821;8822;8823 13348;13349;13350;13351;13352;13353 13351 6 EEISATQIIVCTPEK GITVAELTGDHQLCKEEISATQIIVCTPEK EEISATQIIVCTPEKWDIITRKGGERTYTQ K E E E K W 1 0 0 0 1 1 3 0 0 3 0 1 0 0 1 1 2 0 0 1 0 0 15 0 1716.8604 O75643;A4FU77;Q9H8B9 O75643 578 592 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 6.6999E-28 177.83 4 0.58143 0.75131 18.915 3 Median 0.58143 0.75131 18.915 3 0 Median NaN NaN NaN 0 0 Median 46456000 24640000 21816000 46456000 24640000 21816000 0 0 0 2425 1206 2487 8824;8825;8826;8827 13354;13355;13356;13357;13358;13359;13360 13354 7 EELALLDGSNVVFK RQKLEAQLTENNIVKEELALLDGSNVVFKL KEELALLDGSNVVFKLLGPVLVKQELGEAR K E E F K L 1 0 1 1 0 0 2 1 0 0 3 1 0 1 0 1 0 0 0 2 0 0 14 0 1532.8086 I7HJT1;A2AB88;Q5STK2;O15212 I7HJT1 45 58 HKE2;PFDN6 Prefoldin subunit 6 yes no 2 0.00031291 66.056 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3875500 3875500 0 3875500 3875500 0 0 0 0 2426 536 2488 8828 13361 13361 1 EELAYLK TLARADLEMQIESLKEELAYLKKNHEEEMN EMQIESLKEELAYLKKNHEEEMNALRGQVG K E E L K K 1 0 0 0 0 0 2 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 7 0 864.45928 CON__P02533;P02533;A0A024R1X6;K7ESE1;K7ELP7;CON__Q04695;Q04695;F5GWP8;CON__Q9QWL7;Q14666;K7EPJ9 CON__P02533 244 250 KRT14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 2 0.015413 88.734 1 1 0.060533 0.093174 NaN 1 Median NaN NaN NaN 0 0 Median 0.060533 0.093174 NaN 1 0 Median 27760000 26309000 1451000 5384800 5384800 0 22375000 20924000 1451000 + 2427 949;965 2489 8829;8830 13362;13363 13363 2 EELAYLRK TLARTDLEMQIEGLKEELAYLRKNHEEEML MQIEGLKEELAYLRKNHEEEMLALRGQTGG K E E R K N 1 1 0 0 0 0 2 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 8 1 1020.5604 CON__P08779;P08779;B4DWU0;B4E2J5;Q16195;K7ENW6 CON__P08779 246 253 KRT16;keratin Keratin, type I cytoskeletal 16 no no 2 0.032396 56.011 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8192200 8192200 0 0 0 0 8192200 8192200 0 + 2428 958 2490 8831;8832 13364;13365 13365 2 EELDFQK MLRRVDAENRLQTMKEELDFQKNIYSEELR ENRLQTMKEELDFQKNIYSEELRETKRRHE K E E Q K N 0 0 0 1 0 1 2 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 7 0 907.42871 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;Q5TCI8;H0YAB0 P02545 202 208 LMNA Prelamin-A/C;Lamin-A/C yes no 2 0.010532 115.46 4 1 0.68523 0.86335 51.586 5 Median 0.68466 0.85638 4.7608 4 0 Median 1.7527 2.7571 NaN 1 0 Median 170670000 89022000 81646000 143000000 79716000 63281000 27671000 9306000 18365000 2429 1229 2491 8833;8834;8835;8836;8837 13366;13367;13368;13369;13370;13371;13372 13370 7 EELEAAQSSLWR E E W R 2 1 0 0 0 1 3 0 0 0 2 0 0 0 0 2 0 1 0 0 0 0 12 0 1417.6838 REV__D3DVC4 yes no 2 0.034861 63.216 1 1.1306 1.5386 NaN 1 Median 1.1306 1.5386 NaN 1 0 Median NaN NaN NaN 0 0 Median 5518900 2359600 3159300 5518900 2359600 3159300 0 0 0 + 2430 1851 2492 8838 13373 13373 1 EELEALFLPYDLK QNRNMGKPAQPALSREELEALFLPYDLKRL SREELEALFLPYDLKRLEMYSRNMVDYHLI R E E L K R 1 0 0 1 0 0 3 0 0 0 4 1 0 1 1 0 0 0 1 0 0 0 13 0 1578.8181 Q9H0A0;A0A087WV29 Q9H0A0 811 823 NAT10 N-acetyltransferase 10 yes no 2 6.008E-54 245.08 5 0.83746 1.0517 4.3561 4 Median 0.83746 1.0517 4.3561 4 0 Median NaN NaN NaN 0 0 Median 52586000 28860000 23726000 52586000 28860000 23726000 0 0 0 2431 1730 2493 8839;8840;8841;8842;8843 13374;13375;13376;13377;13378;13379;13380;13381 13375 8 EELEEVIK LATVQPGQNFHMFTKEELEEVIKDI_____ NFHMFTKEELEEVIKDI_____________ K E E I K D 0 0 0 0 0 0 4 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 987.51244 Q5U0A0;A0A109NGN6;P28066 Q5U0A0 232 239 PSMA5 Proteasome subunit alpha type;Proteasome subunit alpha type-5 yes no 2 0.0048978 125.25 2 2 0.34375 0.43516 135.64 3 Median 0.30961 0.39104 15.12 2 0 Median 2.7613 4.0677 NaN 1 0 Median 31687000 17382000 14305000 20453000 16059000 4393800 11234000 1322700 9911000 2432 491 2494 8844;8845;8846;8847 13382;13383;13384;13385;13386 13383 5 EELEFEVPFR TAFKNFIEKVEALTKEELEFEVPFRDLGFN EALTKEELEFEVPFRDLGFNGAPYRSTCLL K E E F R D 0 1 0 0 0 0 4 0 0 0 1 0 0 2 1 0 0 0 0 1 0 0 10 0 1293.6241 Q9Y5B9 Q9Y5B9 793 802 SUPT16H FACT complex subunit SPT16 yes yes 2 3.2414E-22 204.36 4 2 0.73493 1.0566 9.8102 6 Median 0.741 1.0197 6.0594 4 0 Median 0.72286 1.1891 4.9293 2 0 Median 600950000 349320000 251640000 276340000 163150000 113190000 324610000 186170000 138450000 2433 1829 2495 8848;8849;8850;8851;8852;8853 13387;13388;13389;13390;13391;13392;13393;13394;13395;13396;13397;13398 13396 12 EELEFEVPFRDLGFNGAPYR TAFKNFIEKVEALTKEELEFEVPFRDLGFN EVPFRDLGFNGAPYRSTCLLQPTSSALVNA K E E Y R S 1 2 1 1 0 0 4 2 0 0 2 0 0 3 2 0 0 0 1 1 0 0 20 1 2384.1437 Q9Y5B9 Q9Y5B9 793 812 SUPT16H FACT complex subunit SPT16 yes yes 3 5.646E-24 140.68 4 0.82983 1.1325 6.1992 4 Median 0.82983 1.1325 6.1992 4 0 Median NaN NaN NaN 0 0 Median 87813000 49808000 38006000 87813000 49808000 38006000 0 0 0 2434 1829 2496 8854;8855;8856;8857 13399;13400;13401;13402;13403;13404 13402 6 EELEQASQAHGAR ITDLQSSISNLSQAKEELEQASQAHGARLT AKEELEQASQAHGARLTAQVASLTSELTTL K E E A R L 3 1 0 0 0 2 3 1 1 0 1 0 0 0 0 1 0 0 0 0 0 0 13 0 1424.6644 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 483 495 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2;3 1.9115E-55 202.96 5 2 0.69167 0.93775 40.744 7 Median 0.70851 0.97537 15.146 5 0 Median 0.29771 0.45368 1.8905 2 0 Median 87437000 59421000 28016000 47549000 28660000 18889000 39888000 30761000 9127200 2435 148;1499;590 2497 8858;8859;8860;8861;8862;8863;8864 13405;13406;13407;13408;13409;13410;13411;13412;13413;13414;13415;13416;13417;13418 13417 14 EELEQTYHAK HEMREQHDAQVRLYKEELEQTYHAKLENAR VRLYKEELEQTYHAKLENARLSSEMNTSTV K E E A K L 1 0 0 0 0 1 3 0 1 0 1 1 0 0 0 0 1 0 1 0 0 0 10 0 1246.583 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;B4DZT3 P20700 262 271 LMNB1 Lamin-B1 yes no 2 9.3198E-65 243.29 4 2 1.0064 1.4107 59.966 4 Median 0.72279 0.91415 5.4067 2 0 Median 1.6367 2.5012 25.048 2 0 Median 152080000 73979000 78103000 112610000 58295000 54311000 39475000 15684000 23791000 2436 1285 2498 8865;8866;8867;8868;8869;8870 13419;13420;13421;13422;13423;13424;13425;13426;13427;13428 13423 10 EELGFRPEYSASQLK MIDRWYHPGCFVKNREELGFRPEYSASQLK EELGFRPEYSASQLKGFSLLATEDKEALKK R E E L K G 1 1 0 0 0 1 3 1 0 0 2 1 0 1 1 2 0 0 1 0 0 0 15 1 1752.8683 A0A024R3T8;P09874;B4E0E1;B2R5W3;Q05D33;Q6PJL0 A0A024R3T8 168 182 PARP1 Poly [ADP-ribose] polymerase 1 yes no 3 2.9202E-05 66.387 2 0.46333 0.79267 8.2417 2 Median NaN NaN NaN 0 0 Median 0.46333 0.79267 8.2417 2 0 Median 65314000 46033000 19280000 0 0 0 65314000 46033000 19280000 2437 107 2499 8871;8872 13429;13430 13430 2 EELGLIEQAYDNPHEALSR KEAYSVKSRLNQSQREELGLIEQAYDNPHE LIEQAYDNPHEALSRIKRHLLTQRAFKEVG R E E S R I 2 1 1 1 0 1 4 1 1 1 3 0 0 0 1 1 0 0 1 0 0 0 19 0 2183.0495 Q6P2Q9;I3L0J9 Q6P2Q9 862 880 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 1.0711E-09 78.794 2 0.4275 0.56952 18.88 2 Median 0.4275 0.56952 18.88 2 0 Median NaN NaN NaN 0 0 Median 24792000 16635000 8156100 24792000 16635000 8156100 0 0 0 2438 1592 2500 8873;8874 13431;13432;13433 13433 3 EELIAELQDCEGLIVR QDGGLQVVEKQNLSKEELIAELQDCEGLIV ELIAELQDCEGLIVRSATKVTADVINAAEK K E E V R S 1 1 0 1 1 1 4 1 0 2 3 0 0 0 0 0 0 0 0 1 0 0 16 0 1885.9455 O43175;V9HW79 O43175 39 54 PHGDH;HEL-S-113 D-3-phosphoglycerate dehydrogenase yes no 2 8.6465E-25 164.9 2 0.5817 0.7725 NaN 1 Median 0.5817 0.7725 NaN 1 0 Median NaN NaN NaN 0 0 Median 28121000 23009000 5112200 28121000 23009000 5112200 0 0 0 2439 1182 2501 8875;8876 13434;13435;13436 13435 3 EELLAEFGSGTLDLPALTR VWDVLASGYVSRAAREELLAEFGSGTLDLP AEFGSGTLDLPALTRRLTAIIEEAEEAPGA R E E T R R 2 1 0 1 0 0 3 2 0 0 5 0 0 1 1 1 2 0 0 0 0 0 19 0 2031.0524 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 2551 2569 EPPK1 Epiplakin no no 2 2.1862E-24 162.67 3 0.46701 0.62086 12.652 3 Median 0.46701 0.62086 12.652 3 0 Median NaN NaN NaN 0 0 Median 40401000 27539000 12862000 40401000 27539000 12862000 0 0 0 2440 373;1386 2502 8877;8878;8879 13437;13438;13439;13440;13441 13437 5 EELLAVGK TKQQLKASLGKVGVKEELLAVGKFTRTSGE LGKVGVKEELLAVGKFTRTSGETTHTHREP K E E G K F 1 0 0 0 0 0 2 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 8 0 857.48583 P46013 P46013 1036 1043 MKI67 Antigen KI-67 yes no 2 0.0077423 105.39 4 2 0.97165 1.2998 16.159 6 Median 0.91668 1.2123 9.2087 4 0 Median 1.0235 1.611 3.9035 2 0 Median 2584300000 1309500000 1274800000 1767900000 909240000 858610000 816440000 400210000 416230000 2441 1342 2503 8880;8881;8882;8883;8884;8885 13442;13443;13444;13445;13446;13447;13448;13449;13450;13451;13452 13443 11 EELLFMK NITRLQLETEIEALKEELLFMKKNHEEEVK ETEIEALKEELLFMKKNHEEEVKGLQAQIA K E E M K K 0 0 0 0 0 0 2 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 7 0 908.46774 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__H-INV:HIT000015463;CON__P05784 F8VZY9 208 214 KRT18 Keratin, type I cytoskeletal 18 no no 2 0.027056 67.035 2 0.2823 0.3579 9.9409 2 Median 0.2823 0.3579 9.9409 2 0 Median NaN NaN NaN 0 0 Median 17967000 13558000 4409600 17967000 13558000 4409600 0 0 0 + 2442 252;954 2504 8886;8887 13453;13454 13453 2 EELLFMKK NITRLQLETEIEALKEELLFMKKNHEEEVK TEIEALKEELLFMKKNHEEEVKGLQAQIAS K E E K K N 0 0 0 0 0 0 2 0 0 0 2 2 1 1 0 0 0 0 0 0 0 0 8 1 1036.5627 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__P05784 F8VZY9 208 215 KRT18 Keratin, type I cytoskeletal 18 no no 2 0.016519 55.504 1 1.6268 2.6164 NaN 1 Median NaN NaN NaN 0 0 Median 1.6268 2.6164 NaN 1 0 Median 15188000 6028300 9159800 0 0 0 15188000 6028300 9159800 + 2443 252;954 2505 8888 13455 13455 100 0 EELLQVVEAMK DDDIENEADISMYGKEELLQVVEAMKTLLL MYGKEELLQVVEAMKTLLLKERQEKLQLEM K E E M K T 1 0 0 0 0 1 3 0 0 0 2 1 1 0 0 0 0 0 0 2 0 0 11 0 1287.6744 O95235 O95235 561 571 KIF20A Kinesin-like protein KIF20A yes yes 2 0.00075584 70.1 3 0.43959 0.625 13.401 2 Median NaN NaN NaN 0 0 Median 0.43959 0.625 13.401 2 0 Median 16177000 12951000 3225500 0 0 0 16177000 12951000 3225500 2444 1215 2506 8889;8890;8891 13456;13457;13458 13457 450 3 EELMSSDLEETAGSTSIPK SISFSKPKKKKSFSKEELMSSDLEETAGST SSDLEETAGSTSIPKRKKSTPKEETVNDPE K E E P K R 1 0 0 1 0 0 4 1 0 1 2 1 1 0 1 4 2 0 0 0 0 0 19 0 2022.9303 A8K9K6;O00567;Q9BSN3 A8K9K6 515 533 NOP56 Nucleolar protein 56 yes no 2 3.3522E-51 200.76 5 2 0.69526 0.8898 18.329 7 Median 0.70453 0.92775 14.625 5 0 Median 0.43232 0.68274 3.0777 2 0 Median 381350000 264170000 117180000 22075000 12107000 9968400 359270000 252060000 107210000 2445 647 2507;2508 8892;8893;8894;8895;8896;8897;8898 13459;13460;13461;13462;13463;13464;13465;13466;13467;13468;13469 13461 223 11 EELNAISGPNEFAEFYNR GNLRDLYDDKDGLRKEELNAISGPNEFAEF NAISGPNEFAEFYNRLKQIKEFHRKHPNEI K E E N R L 2 1 3 0 0 0 4 1 0 1 1 0 0 2 1 1 0 0 1 0 0 0 18 0 2098.9596 Q53HM6;B3KY12;A8K7V1;A8K566;Q12874 Q53HM6 70 87 SF3A3 Splicing factor 3A subunit 3 yes no 2 0.00010256 95.981 1 0.61058 0.84484 NaN 1 Median 0.61058 0.84484 NaN 1 0 Median NaN NaN NaN 0 0 Median 1803800 911720 892110 1803800 911720 892110 0 0 0 2446 614 2509 8899 13470 13470 1 EELPVIPK KGSSSQAPASKKLNKEELPVIPKGKPKSGR ASKKLNKEELPVIPKGKPKSGRVWKDRSKK K E E P K G 0 0 0 0 0 0 2 0 0 1 1 1 0 0 2 0 0 0 0 1 0 0 8 0 923.53278 Q9H6F5 Q9H6F5 230 237 CCDC86 Coiled-coil domain-containing protein 86 yes yes 2 0.0061622 85.359 3 2 0.7447 0.95566 9.4565 5 Median 0.75762 0.98065 4.7686 3 0 Median 0.53308 0.84952 3.9879 2 0 Median 364940000 218760000 146180000 221960000 124870000 97086000 142990000 93888000 49098000 2447 1737 2510 8900;8901;8902;8903;8904 13471;13472;13473;13474;13475;13476;13477;13478 13473 8 EELQSGVDAANSAAQQYQR KQQKRQSGQTDPLQKEELQSGVDAANSAAQ SGVDAANSAAQQYQRRLAAVALINAAIQKG K E E Q R R 4 1 1 1 0 4 2 1 0 0 1 0 0 0 0 2 0 0 1 1 0 0 19 0 2063.9508 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;Q6P1N4 A4QPB0 369 387 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 1.7349E-25 169.79 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1067800 1067800 0 1067800 1067800 0 0 0 0 2448 287 2511 8905;8906 13479;13480;13481 13479 3 EELRELNDR TTPLSPTRLSRLQEKEELRELNDRLAVYID SRLQEKEELRELNDRLAVYIDKVRSLETEN K E E D R L 0 2 1 1 0 0 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 1 1172.5786 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;A0A0D9SFY5;Q03252 P20700 34 42 LMNB1;LMNB2 Lamin-B1;Lamin-B2 no no 2 0.013024 104.06 1 1.324 1.8266 NaN 1 Median 1.324 1.8266 NaN 1 0 Median NaN NaN NaN 0 0 Median 13522000 5715900 7806600 13522000 5715900 7806600 0 0 0 2449 1285;1440 2512 8907 13482 13482 1 EELRLEEAK KSSPEERERMIKQLKEELRLEEAKLVLLKK MIKQLKEELRLEEAKLVLLKKLRQSQIQKE K E E A K L 1 1 0 0 0 0 4 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 1 1115.5823 A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7;C9JHD7;C9JJK9 A0A024R7K7 150 158 GATAD2A Transcriptional repressor p66-alpha yes no 2 0.0065657 98.233 1 0.59877 0.77869 NaN 1 Median 0.59877 0.77869 NaN 1 0 Median NaN NaN NaN 0 0 Median 11321000 7689400 3631800 11321000 7689400 3631800 0 0 0 2450 179 2513 8908 13483 13483 1 EELSAILK LHTGSAPSSSTPFNKEELSAILKFGAEELF SSTPFNKEELSAILKFGAEELFKEPEGEEQ K E E L K F 1 0 0 0 0 0 2 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 8 0 901.51205 O14646 O14646 963 970 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 0.012239 67.981 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2189100 2189100 0 0 0 0 2189100 2189100 0 2451 1169 2514 8909 13484 13484 1 EELSAVER STKRCPKTRPRKEVKEELSAVERLTQTSGQ RPRKEVKEELSAVERLTQTSGQSTHTHKEP K E E E R L 1 1 0 0 0 0 3 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 8 0 931.46108 P46013 P46013 2614 2621 MKI67 Antigen KI-67 yes yes 2 0.00028048 139.68 3 2 0.9093 1.2627 12.885 5 Median 0.9093 1.2509 0.67306 3 0 Median 0.9536 1.5661 8.2047 2 0 Median 688200000 355810000 332400000 402870000 210810000 192050000 285340000 144990000 140350000 2452 1342 2515 8910;8911;8912;8913;8914 13485;13486;13487;13488;13489;13490;13491;13492;13493;13494 13486 10 EELSEEGYLAK EIKNQLCDLETKLRKEELSEEGYLAKVKSL KLRKEELSEEGYLAKVKSLLNKDLSLENGA K E E A K V 1 0 0 0 0 0 4 1 0 0 2 1 0 0 0 1 0 0 1 0 0 0 11 0 1266.598 A0A024R7E3;P26358;Q59FP7;K7EJL0 A0A024R7E3 133 143 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 0.0022056 100.25 2 1 1.0967 1.6142 NaN 1 Median NaN NaN NaN 0 0 Median 1.0967 1.6142 NaN 1 0 Median 14621000 10405000 4216300 6702500 6702500 0 7918600 3702300 4216300 2453 176 2516 8915;8916;8917 13495;13496;13497 13496 3 EELSNVLAAMR IKKRVGTHIRAKRKREELSNVLAAMRKAAA KRKREELSNVLAAMRKAAAKKD________ R E E M R K 2 1 1 0 0 0 2 0 0 0 2 0 1 0 0 1 0 0 0 1 0 0 11 0 1231.6231 Q9Y3U8 Q9Y3U8 88 98 RPL36 60S ribosomal protein L36 yes yes 2 5.2318E-07 177.3 7 4 0.638 0.85393 17.031 8 Median 0.638 0.85393 10.726 4 0 Median 0.55298 0.78853 22.637 4 0 Median 136700000 85373000 51324000 83701000 49499000 34203000 52996000 35874000 17122000 2454 1821 2517;2518 8918;8919;8920;8921;8922;8923;8924;8925;8926;8927;8928 13498;13499;13500;13501;13502;13503;13504;13505;13506;13507;13508;13509;13510;13511;13512 13500 846 15 EELSNVLAAMRK IKKRVGTHIRAKRKREELSNVLAAMRKAAA RKREELSNVLAAMRKAAAKKD_________ R E E R K A 2 1 1 0 0 0 2 0 0 0 2 1 1 0 0 1 0 0 0 1 0 0 12 1 1359.718 Q9Y3U8 Q9Y3U8 88 99 RPL36 60S ribosomal protein L36 yes yes 2;3 0.0016754 76.282 2 1 1.0061 1.3443 7.8742 2 Median 1.0061 1.3443 7.8742 2 0 Median NaN NaN NaN 0 0 Median 10906000 6738200 4167500 7478900 3311400 4167500 3426800 3426800 0 2455 1821 2519;2520 8929;8930;8931 13513;13514;13515 13515 846 3 EELTLEGIR TKKFMRDPIRILVKKEELTLEGIRQFYINV RILVKKEELTLEGIRQFYINVEREEWKLDT K E E I R Q 0 1 0 0 0 0 3 1 0 1 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1058.5608 A8K7F6;P60842;A8K088;J3KT12;J3KTB5;Q59F68;J3QS69;B4DNH2;J3KSZ0;J3KTN0;B4DKP9 A8K7F6 239 247 EIF4A1 Eukaryotic initiation factor 4A-I yes no 2 0.0017454 106.04 4 1 0.34018 0.45352 121.22 4 Median 0.35893 0.47823 15.541 3 0 Plateau 3.2839 4.6464 NaN 1 0 Median 68830000 52633000 16197000 62772000 51029000 11743000 6058000 1603800 4454200 2456 634 2521 8932;8933;8934;8935;8936 13516;13517;13518;13519;13520;13521;13522;13523 13522 8 EELYLQR EMKPNLGAIAEYKKKEELYLQRVAELDKIT AIAEYKKKEELYLQRVAELDKITYERDSFR K E E Q R V 0 1 0 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 7 0 949.4869 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1100 1106 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.01411 105.27 3 2 0.65656 0.94533 13.826 5 Median 0.62039 0.82731 12.994 3 0 Median 0.66908 1.001 1.1827 2 0 Median 113770000 68942000 44825000 81138000 50117000 31022000 32628000 18825000 13803000 2457 1760 2522 8937;8938;8939;8940;8941 13524;13525;13526;13527;13528;13529;13530;13531 13528 8 EELYQNLTR AFRALSSEGKPYVTKEELYQNLTREQADYC KPYVTKEELYQNLTREQADYCVSHMKPYVD K E E T R E 0 1 1 0 0 1 2 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 9 0 1164.5775 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1 Q13813 2427 2435 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 4.969E-09 147.2 4 0.77114 1.0358 12.617 4 Median 0.77114 1.0358 12.617 4 0 Median NaN NaN NaN 0 0 Median 62750000 34845000 27905000 62750000 34845000 27905000 0 0 0 2458 1476 2523 8942;8943;8944;8945 13532;13533;13534;13535;13536;13537;13538 13536 7 EENAEQQALAAK NKKDELQSERNYLWREENAEQQALAAKRED LWREENAEQQALAAKREDLEKKQQLLRAAT R E E A K R 4 0 1 0 0 2 3 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 12 0 1300.6259 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 475 486 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 2.0668E-05 98.249 1 2 0.5448 0.69248 NaN 1 Median 0.5448 0.69248 NaN 1 0 Median NaN NaN NaN 0 0 Median 25183000 19122000 6060600 15757000 9696300 6060600 9426000 9426000 0 2459 663 2524 8946;8947;8948 13539;13540;13541 13539 2 EENSTEEQALEDQNAK YYKEIEDRQKLKRKKEENSTEEQALEDQNA ENSTEEQALEDQNAKRAITYQIAKNRGLTP K E E A K R 2 0 2 1 0 2 5 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 16 0 1833.7864 Q9NQZ2 Q9NQZ2 393 408 UTP3 Something about silencing protein 10 yes yes 2 5.8384E-25 172.33 5 2 0.87597 1.2035 5.2057 6 Median 0.9353 1.2035 6.2456 4 0 Median 0.79414 1.2019 3.9964 2 0 Median 76006000 40513000 35493000 45363000 22561000 22802000 30643000 17952000 12691000 2460 1755 2525 8949;8950;8951;8952;8953;8954;8955 13542;13543;13544;13545;13546;13547;13548;13549;13550;13551;13552;13553 13544 12 EENSTEEQALEDQNAKR YYKEIEDRQKLKRKKEENSTEEQALEDQNA NSTEEQALEDQNAKRAITYQIAKNRGLTPR K E E K R A 2 1 2 1 0 2 5 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 17 1 1989.8876 Q9NQZ2 Q9NQZ2 393 409 UTP3 Something about silencing protein 10 yes yes 3 0.0085228 32.329 2 0.43377 0.60318 NaN 1 Median NaN NaN NaN 0 0 Median 0.43377 0.60318 NaN 1 0 Median 3653200 2919900 733240 0 0 0 3653200 2919900 733240 2461 1755 2526 8956;8957 13554;13555;13556 13555 3 EENVDIEGLDPAPSVSALTPHAGTGPVNPPAR YHSVTVPLVGEPGPKEENVDIEGLDPAPSV LTPHAGTGPVNPPARCSRTFITFSDDATFE K E E A R C 4 1 2 2 0 0 3 3 1 1 2 0 0 0 6 2 2 0 0 3 0 0 32 0 3206.5844 Q15906 Q15906 229 260 VPS72 Vacuolar protein sorting-associated protein 72 homolog yes yes 3 2.5854E-05 63.901 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1214900 1214900 0 1214900 1214900 0 0 0 0 2462 1518 2527 8958 13557 13557 1 EENVGLHQTLDQTLNELNCI EKTIDDLEEKLAQAKEENVGLHQTLDQTLN LHQTLDQTLNELNCI_______________ K E E C I - 0 0 3 1 1 2 3 1 1 1 4 0 0 0 0 0 2 0 0 1 0 0 20 0 2339.1063 B4DVY2;V9HW56;P67936;B4DTB1;K7EPB9 B4DVY2 210 229 HEL-S-108;TPM4 Tropomyosin alpha-4 chain yes no 2 3.1958E-27 186.29 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6566400 0 0 6566400 0 0 0 0 0 + 2463 864 2528 8959;8960 13558;13559 13558 2 EEPAIAPIEHVLSGWK LKNRQAEQLVFPLEKEEPAIAPIEHVLSGW EPAIAPIEHVLSGWKARTPLEQEIFNLLHK K E E W K A 2 0 0 0 0 0 3 1 1 2 1 1 0 0 2 1 0 1 0 1 0 0 16 0 1774.9254 Q9BVJ6;B4E343 Q9BVJ6 164 179 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 3 0.0027478 30.072 2 0.61623 0.89548 12.053 2 Median NaN NaN NaN 0 0 Median 0.61623 0.89548 12.053 2 0 Median 12488000 7691700 4796200 0 0 0 12488000 7691700 4796200 2464 1719 2529 8961;8962 13560;13561;13562 13562 3 EEPAPEEEEPLLLQRPER KQKASSEGTIPQVQREEPAPEEEEPLLLQR APEEEEPLLLQRPERVQTLEELEELGKEEC R E E E R V 1 2 0 0 0 1 7 0 0 0 3 0 0 0 4 0 0 0 0 0 0 0 18 1 2160.0699 Q9BVJ6;B4E343 Q9BVJ6 490 507 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 3 1.5828E-07 66.387 3 2 0.9205 1.2768 10.349 5 Median 1.0416 1.4389 7.5608 3 0 Median 0.76786 1.1859 2.4053 2 0 Median 112620000 56877000 55745000 42726000 19189000 23538000 69895000 37688000 32207000 2465 1719 2530 8963;8964;8965;8966;8967 13563;13564;13565;13566;13567;13568 13568 6 EEPFFPPPEEFVFIHAVPVEER VLCKNCVVELNFGQKEEPFFPPPEEFVFIH PEEFVFIHAVPVEERVRTAVPPKTIEECEV K E E E R V 1 1 0 0 0 0 6 0 1 1 0 0 0 4 5 0 0 0 0 3 0 0 22 0 2640.29 H3BQZ7;Q1KMD3 H3BQZ7 418 439 HNRNPUL2-BSCL2;HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 3 0.024449 52.769 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5353800 5353800 0 5353800 5353800 0 0 0 0 2466 1105 2531 8968 13569 13569 1 EEPLAVSK SKQRLKIPLVKVDMKEEPLAVSKLTRTSGE LVKVDMKEEPLAVSKLTRTSGETTQTHTEP K E E S K L 1 0 0 0 0 0 2 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 8 0 871.4651 P46013 P46013 2493 2500 MKI67 Antigen KI-67 yes yes 2 0.020669 56.721 1 1 0.98057 1.3907 24.372 2 Median 0.94088 1.1706 NaN 1 0 Median 1.0219 1.6523 NaN 1 0 Median 92100000 45682000 46418000 48023000 23219000 24803000 44077000 22463000 21615000 2467 1342 2532 8969;8970 13570;13571 13570 2 EEPLSEEEPCTSTAIASPEK SVKKKKKRGKKKHIKEEPLSEEEPCTSTAI EEEPCTSTAIASPEKKKKKKKKRENED___ K E E E K K 2 0 0 0 1 0 6 0 0 1 1 1 0 0 3 3 2 0 0 0 0 0 20 0 2202.9838 Q9Y2X3;B3KN82 Q9Y2X3 498 517 NOP58 Nucleolar protein 58 yes no 2 8.3158E-26 168 4 2 0.43185 0.63558 25.229 3 Median 0.65102 0.85837 NaN 1 0 Median 0.39518 0.57487 14.197 2 0 Median 22522000 16075000 6447000 8015900 5985600 2030300 14506000 10090000 4416700 2468 1810 2533 8971;8972;8973;8974;8975;8976 13572;13573;13574;13575;13576;13577;13578;13579;13580 13574 9 EEQMDGTVTLK LGDMEGRLFMLLLEKEEQMDGTVTLKDLRV LLEKEEQMDGTVTLKDLRVELLGETSIAEC K E E L K D 0 0 0 1 0 1 2 1 0 0 1 1 1 0 0 0 2 0 0 1 0 0 11 0 1249.586 Q16531;B4DSA8;F5GY55;B7Z2A1;B7Z859 Q16531 288 298 DDB1 DNA damage-binding protein 1 yes no 2 0.0002918 79.489 2 0.89593 1.3778 NaN 1 Median NaN NaN NaN 0 0 Median 0.89593 1.3778 NaN 1 0 Median 29732000 18876000 10855000 0 0 0 29732000 18876000 10855000 2469 1520 2534 8977;8978 13581;13582 13581 695 2 EEQNSSSLLEENK KIDHLTNNRNDLISKEEQNSSSLLEENKVH SKEEQNSSSLLEENKVHADLVISKPVSKSP K E E N K V 0 0 2 0 0 1 4 0 0 0 2 1 0 0 0 3 0 0 0 0 0 0 13 0 1505.6845 A0A024R3R1;Q4LE39;H0Y7Y8;H7C5R6;A0A024R3V1 A0A024R3R1 752 764 ARID4B AT-rich interactive domain-containing protein 4B yes no 2 0.035313 82.494 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2470 105 2535 8979 13583 13583 1 EEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGK ______________________________ SFNDTFVHVTDLSGKETICRVTGGMKVKAD K E E G K E 2 0 2 2 1 2 4 4 2 2 2 1 0 4 1 3 2 0 0 6 0 0 40 0 4376.106 P62263;E5RH77 P62263 11 50 RPS14 40S ribosomal protein S14 yes no 4 2.3142E-05 29.972 2 0.89776 1.1187 NaN 1 Median 0.89776 1.1187 NaN 1 0 Median NaN NaN NaN 0 0 Median 59933000 34630000 25304000 59933000 34630000 25304000 0 0 0 2471 1401 2536 8980;8981 13584;13585 13585 2 EESFTSLEVR QASASTDGVDKLSGKEESFTSLEVRKVAET KLSGKEESFTSLEVRKVAETKEKSKHLKTK K E E V R K 0 1 0 0 0 0 3 0 0 0 1 0 0 1 0 2 1 0 0 1 0 0 10 0 1195.5721 A4LAA3;A0A096LNL9;A0A096LNW1 A4LAA3 928 937 ATRX yes no 2 1.4248E-06 140.35 3 0.73003 1.0156 NaN 1 Median 0.73003 1.0156 NaN 1 0 Median NaN NaN NaN 0 0 Median 12932000 11364000 1567700 12932000 11364000 1567700 0 0 0 2472 556 2537 8982;8983;8984 13586;13587;13588 13586 3 EESGKPGAHVTVK SIDGRVVEPKRAVAREESGKPGAHVTVKKL AREESGKPGAHVTVKKLFVGGIKEDTEEHH R E E V K K 1 0 0 0 0 0 2 2 1 0 0 2 0 0 1 1 1 0 0 2 0 0 13 1 1337.6939 P22626;A0A024RA28;A0A087WUI2;I6L957 P22626 100 112 HNRNPA2B1;HNRPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2;3 5.0739E-32 178.95 6 1 0.26305 0.3218 86.953 7 Median 0.25612 0.31443 15.14 6 0 Median 1.9997 3.1633 NaN 1 0 Median 225150000 167770000 57376000 207800000 161890000 45914000 17347000 5885700 11461000 2473 1290 2538 8985;8986;8987;8988;8989;8990;8991 13589;13590;13591;13592;13593;13594;13595;13596;13597;13598;13599 13592 11 EESGKPGAHVTVKK SIDGRVVEPKRAVAREESGKPGAHVTVKKL REESGKPGAHVTVKKLFVGGIKEDTEEHHL R E E K K L 1 0 0 0 0 0 2 2 1 0 0 3 0 0 1 1 1 0 0 2 0 0 14 2 1465.7889 P22626;A0A024RA28;A0A087WUI2;I6L957 P22626 100 113 HNRNPA2B1;HNRPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 3 0.040648 53.377 1 0.25597 0.28703 NaN 1 Median 0.25597 0.28703 NaN 1 0 Median NaN NaN NaN 0 0 Median 1035500 821940 213550 1035500 821940 213550 0 0 0 2474 1290 2539 8992 13600 13600 1 EESQIPVDEVFFHR DIRHLPVNSKEFLAKEESQIPVDEVFFHRY KEESQIPVDEVFFHRYYKKVAVKEKQKRDA K E E H R Y 0 1 0 1 0 1 3 0 1 1 0 0 0 2 1 1 0 0 0 2 0 0 14 0 1730.8264 B2R5U7;Q03701 B2R5U7 803 816 CEBPZ CCAAT/enhancer-binding protein zeta no no 3 0.00027565 66.784 4 2 0.75176 1.0203 12.431 6 Median 0.81312 1.0839 11.072 4 0 Median 0.61097 0.92862 6.896 2 0 Median 94806000 54812000 39994000 58072000 31621000 26451000 36734000 23191000 13543000 2475 693;1441 2540 8993;8994;8995;8996;8997;8998 13601;13602;13603;13604;13605;13606;13607;13608;13609;13610;13611 13605 11 EESSELEQPFAQDTSSVGPDRK ILDILGETCKSEPVKEESSELEQPFAQDTS QPFAQDTSSVGPDRKLAEEEDLFDSAHPEE K E E R K L 1 1 0 2 0 2 4 1 0 0 1 1 0 1 2 4 1 0 0 1 0 0 22 1 2435.1088 A0PJ47;B7Z1C7;B7Z2F6;B7Z2Z1;B7Z5X3;B7ZLP5;A8K329;Q15424;Q14151 A0PJ47 231 252 SAFB2;SAFB Scaffold attachment factor B1;Scaffold attachment factor B2 yes no 3 0.0090643 54.658 1 1.0603 1.3491 NaN 1 Median 1.0603 1.3491 NaN 1 0 Median NaN NaN NaN 0 0 Median 797070 423650 373420 797070 423650 373420 0 0 0 2476 531 2541 8999 13612 13612 0 EESTTGNANLLEK LHRLAQEREAAKAKKEESTTGNANLLEKTG KKEESTTGNANLLEKTGGVDFHMKAVPGTE K E E E K T 1 0 2 0 0 0 3 1 0 0 2 1 0 0 0 1 2 0 0 0 0 0 13 0 1404.6733 F5H101;A0A024R250;Q76FK4;F8WE42;B4DM91;Q6AI50;A6H8Z4;F5GWN9;A0A0A0MSJ1;F5H8B8;F5H797;F5H692;F5H7D5 F5H101 107 119 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 2 0.00012175 89.805 3 0.83577 1.0704 13.553 3 Median 0.83577 1.0704 13.553 3 0 Median NaN NaN NaN 0 0 Median 17528000 9872400 7655600 17528000 9872400 7655600 0 0 0 2477 80 2542 9000;9001;9002 13613;13614;13615;13616 13616 4 EETVGIFSPLSVK KRCSKVVSFSKPIEKEETVGIFSPLSVKLN EKEETVGIFSPLSVKLNIVISPYHFDNSWK K E E V K L 0 0 0 0 0 0 2 1 0 1 1 1 0 1 1 2 1 0 0 2 0 0 13 0 1404.75 A0A0D9SFM0;Q149N8;H7C2W2 A0A0D9SFM0 86 98 SHPRH E3 ubiquitin-protein ligase SHPRH yes no 2 0.025996 90.913 1 0.81275 1.0447 NaN 1 Median 0.81275 1.0447 NaN 1 0 Median NaN NaN NaN 0 0 Median 1808300 925480 882820 1808300 925480 882820 0 0 0 2478 436 2543 9003 13617 13617 0 EETVNDPEEAGHR AGSTSIPKRKKSTPKEETVNDPEEAGHRSG PKEETVNDPEEAGHRSGSKKKRKFSKGEPV K E E H R S 1 1 1 1 0 0 4 1 1 0 0 0 0 0 1 0 1 0 0 1 0 0 13 0 1481.6383 A8K9K6;O00567;Q9BSN3 A8K9K6 541 553 NOP56 Nucleolar protein 56 yes no 2;3 2.2857E-17 126.71 5 2 0.68166 0.93934 20.56 6 Median 0.72857 0.99237 16.824 4 0 Median 0.48579 0.77464 2.5026 2 0 Median 252210000 157820000 94389000 143760000 84935000 58820000 108450000 72883000 35569000 2479 647 2544 9004;9005;9006;9007;9008;9009;9010 13618;13619;13620;13621;13622;13623;13624;13625;13626;13627;13628 13620 11 EEVEEVLDSK MQDPLSPKAPLICTKEEVEEVLDSKAGWGS LICTKEEVEEVLDSKAGWGSPCHLSGESVI K E E S K A 0 0 0 1 0 0 4 0 0 0 1 1 0 0 0 1 0 0 0 2 0 0 10 0 1175.5558 Q7Z5J4;A8MXE8 Q7Z5J4 902 911 RAI1 Retinoic acid-induced protein 1 yes no 2 8.049E-06 100.02 2 1 0.83691 1.1108 NaN 1 Median NaN NaN NaN 0 0 Median 0.83691 1.1108 NaN 1 0 Median 2979000 1676100 1302900 0 0 0 2979000 1676100 1302900 2480 1617 2545 9011;9012;9013 13629;13630;13631 13630 3 EEVGEEAIVELVENGK WVPSDKSGFEPASLKEEVGEEAIVELVENG EVGEEAIVELVENGKKVKVNKDDIQKMNPP K E E G K K 1 0 1 0 0 0 6 2 0 1 1 1 0 0 0 0 0 0 0 3 0 0 16 0 1742.8574 A0A024R1N1;P35579;Q86XU5;B4E3S1;Q5BKV1;B1AH99;A0A0U4BW16 A0A024R1N1 48 63 MYH9 Myosin-9 no no 2 1.0321E-155 286.19 5 1.0163 1.2436 3.8911 3 Plateau 1.0163 1.2436 3.8911 3 0 Plateau NaN NaN NaN 0 0 Median 80770000 37883000 42886000 80770000 37883000 42886000 0 0 0 2481 61;490 2546 9014;9015;9016;9017;9018 13632;13633;13634;13635;13636;13637 13633 6 EEVGEEAIVELVENGKK WVPSDKSGFEPASLKEEVGEEAIVELVENG VGEEAIVELVENGKKVKVNKDDIQKMNPPK K E E K K V 1 0 1 0 0 0 6 2 0 1 1 2 0 0 0 0 0 0 0 3 0 0 17 1 1870.9524 A0A024R1N1;P35579;Q86XU5;B4E3S1;Q5BKV1;B1AH99;A0A0U4BW16 A0A024R1N1 48 64 MYH9 Myosin-9 no no 2;3 1.6375E-10 133.88 4 2 1.0854 1.3328 79.183 4 Median 0.98099 1.2103 11.636 3 0 Median 3.9851 6.1834 NaN 1 0 Median 85181000 32659000 52522000 69904000 31061000 38843000 15277000 1597900 13679000 2482 61;490 2547 9019;9020;9021;9022;9023;9024 13638;13639;13640;13641;13642;13643;13644;13645;13646 13641 9 EEVLPVGK SKQRLKISLGKVGVKEEVLPVGKLTQTSGK LGKVGVKEEVLPVGKLTQTSGKTTQTHRET K E E G K L 0 0 0 0 0 0 2 1 0 0 1 1 0 0 1 0 0 0 0 2 0 0 8 0 869.48583 P46013 P46013 2010 2017 MKI67 Antigen KI-67 yes yes 2 0.0065539 107.32 4 0.9376 1.2183 3.1433 4 Median 0.9376 1.2183 3.1433 4 0 Median NaN NaN NaN 0 0 Median 391330000 201450000 189890000 391330000 201450000 189890000 0 0 0 2483 1342 2548 9025;9026;9027;9028 13647;13648;13649;13650;13651;13652 13648 6 EEVNELQYR QIELTEMESMKTTLKEEVNELQYRQEQLEL MKTTLKEEVNELQYRQEQLELLITNLMRQV K E E Y R Q 0 1 1 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 9 0 1178.5568 D6RC83;H0YBG5;Q96EA4 D6RC83 182 190 SPDL1 Protein Spindly yes no 2 0.00092939 85.064 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1096300 1096300 0 1096300 1096300 0 0 0 0 2484 991 2549 9029 13653 13653 1 EEVQSLREEAEK ASNSARAAERSSALREEVQSLREEAEKQRV ALREEVQSLREEAEKQRVASENLRQELTSQ R E E E K Q 1 1 0 0 0 1 5 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 12 1 1445.6998 A0A024R5M9;A0A024R5G4;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1292 1303 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 2.7241E-11 153.11 2 0.40637 0.63334 7.6751 2 Median NaN NaN NaN 0 0 Median 0.40637 0.63334 7.6751 2 0 Median 22490000 16409000 6080500 0 0 0 22490000 16409000 6080500 2485 148;1499 2550 9030;9031 13654;13655 13655 2 EEVTELLAR PSAKQLVPEHVVMTKEEVTELLARYKLREN HVVMTKEEVTELLARYKLRENQLPRIQAGD K E E A R Y 1 1 0 0 0 0 3 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 9 0 1058.5608 A0A087WVZ9;E5KT65;P19388;B4DJ89;A0A087WWX0;A0A0A0MQR7 A0A087WVZ9 127 135 POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1 yes no 2 0.017961 53.968 1 0.70278 0.97284 NaN 1 Median 0.70278 0.97284 NaN 1 0 Median NaN NaN NaN 0 0 Median 4031300 2132500 1898800 4031300 2132500 1898800 0 0 0 2486 352 2551 9032 13656 13656 1 EEVTPEQLK RVKLQDGVHIIKETKEEVTPEQLKLMRTQD IIKETKEEVTPEQLKLMRTQDVKYIEMKRV K E E L K L 0 0 0 0 0 1 3 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 9 0 1071.5448 Q9Y3A2 Q9Y3A2 87 95 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 2 0.032089 43.808 1 1.1787 1.4689 NaN 1 Median 1.1787 1.4689 NaN 1 0 Median NaN NaN NaN 0 0 Median 8496800 3326000 5170800 8496800 3326000 5170800 0 0 0 2487 1814 2552 9033 13657 13657 1 EEVVLLTHGDSVDK ISVDNTCSLFRGLQKEEVVLLTHGDSVDKV KEEVVLLTHGDSVDKVADGFKVVARSGNIV K E E D K V 0 0 0 2 0 0 2 1 1 0 2 1 0 0 0 1 1 0 0 3 0 0 14 0 1539.7781 B4DUT7;A0A140VJK6;P49915;Q53F90 B4DUT7 95 108 GMPS GMP synthase [glutamine-hydrolyzing] yes no 2 1.6999E-05 92.866 2 0.42288 0.53578 NaN 1 Median 0.42288 0.53578 NaN 1 0 Median NaN NaN NaN 0 0 Median 6346800 4440200 1906600 6346800 4440200 1906600 0 0 0 2488 498 2553 9034;9035 13658;13659 13659 2 EEYITSALESTEEK TTQKHLQETKLQLVKEEYITSALESTEEKL KEEYITSALESTEEKLHDAASKLLNTVEET K E E E K L 1 0 0 0 0 0 5 0 0 1 1 1 0 0 0 2 2 0 1 0 0 0 14 0 1627.7465 P52732;B2RAM6 P52732 478 491 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 2 2.1641E-05 101.56 4 1 0.44572 0.56519 NaN 1 Median 0.44572 0.56519 NaN 1 0 Median NaN NaN NaN 0 0 Median 14476000 10498000 3978200 12550000 10498000 2052400 1925900 0 1925900 2489 1366 2554 9036;9037;9038;9039;9040 13660;13661;13662;13663;13664;13665 13662 6 EEYQLVQVEQK RAGRTGVCICFYQHKEEYQLVQVEQKAGIK YQHKEEYQLVQVEQKAGIKFKRIGVPSATE K E E Q K A 0 0 0 0 0 3 3 0 0 0 1 1 0 0 0 0 0 0 1 2 0 0 11 0 1391.6933 Q9NR30 Q9NR30 545 555 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.0093539 110.76 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12580000 0 12580000 12580000 0 12580000 0 0 0 2490 1756 2555 9041 13666 13666 1 EFAAALTAER KPCGPQCYQHLEGAKEFAAALTAERIKTPP LEGAKEFAAALTAERIKTPPKRPGGRRRGR K E F E R I 4 1 0 0 0 0 2 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 10 0 1077.5455 A0A090N8E9;Q15910;S4S3R8;Q75MP9;Q75MQ0;F2YMM1;B7Z8K5 A0A090N8E9 338 347 EZH2 Histone-lysine N-methyltransferase EZH2 yes no 2 9.0165E-06 128.6 4 0.73084 0.98159 0.77351 4 Median 0.73084 0.98159 0.77351 4 0 Median NaN NaN NaN 0 0 Median 75504000 42568000 32937000 75504000 42568000 32937000 0 0 0 2491 381 2556 9042;9043;9044;9045 13667;13668;13669;13670;13671;13672;13673 13670 7 EFADSLGIPFLETSAK CDLTTKKVVDYTTAKEFADSLGIPFLETSA FADSLGIPFLETSAKNATNVEQSFMTMAAE K E F A K N 2 0 0 1 0 0 2 1 0 1 2 1 0 2 1 2 1 0 0 0 0 0 16 0 1723.8669 Q5U0I6;P62820;E9PLD0;E7END7;B7Z8M7;Q9H0U4;Q6FIG4;Q92928;Q96RD8 Q5U0I6 141 156 RAB1A;RAB1B;RAB1C Ras-related protein Rab-1A;Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C yes no 2 4.7869E-13 172.09 2 0.68385 0.85984 0.7446 2 Median 0.68385 0.85984 0.7446 2 0 Median NaN NaN NaN 0 0 Median 25385000 14541000 10844000 25385000 14541000 10844000 0 0 0 2492 1412 2557 9046;9047 13674;13675;13676 13674 3 EFAGEDTSDLFLEER PAFKEHLRDFLVQIKEFAGEDTSDLFLEER EFAGEDTSDLFLEEREIALRQADEEKHKRQ K E F E R E 1 1 0 2 0 0 4 1 0 0 2 0 0 2 0 1 1 0 0 0 0 0 15 0 1756.7792 O14980;B3KWD0;B7ZB16;B4DR01 O14980 1024 1038 XPO1 Exportin-1 yes no 2 0.00045128 111.12 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4621500 4621500 0 4621500 4621500 0 0 0 0 2493 1174 2558 9048;9049;9050 13677;13678;13679 13679 3 EFALNNENYSLSNR RELSPQHKRERLRNREFALNNENYSLSNRQ REFALNNENYSLSNRQVSSPSFTNRRAAKA R E F N R Q 1 1 4 0 0 0 2 0 0 0 2 0 0 1 0 2 0 0 1 0 0 0 14 0 1669.7696 A0A024RAC0;Q86V48 A0A024RAC0 406 419 LUZP1 Leucine zipper protein 1 yes no 2 1.1101E-09 100.88 2 1.1341 1.5803 1.7441 2 Median 1.1341 1.5803 1.7441 2 0 Median NaN NaN NaN 0 0 Median 6185100 2633900 3551200 6185100 2633900 3551200 0 0 0 2494 238 2559 9051;9052 13680;13681 13681 2 EFALSNLK YNACTLHGGKGQEQREFALSNLKAGAKDIL GKGQEQREFALSNLKAGAKDILVATDVAGR R E F L K A 1 0 1 0 0 0 1 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 8 0 920.49673 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56 B3KY11 684 691 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.032749 50.127 1 0.52036 0.66244 NaN 1 Median 0.52036 0.66244 NaN 1 0 Median NaN NaN NaN 0 0 Median 15477000 8937500 6539100 15477000 8937500 6539100 0 0 0 2495 45 2560 9053 13682 13682 1 EFASHLQQLQDALNELTEEHSK NQLSEENGDLSFKLREFASHLQQLQDALNE QLQDALNELTEEHSKATQEWLEKQAQLEKE R E F S K A 2 0 1 1 0 3 4 0 2 0 4 1 0 1 0 2 1 0 0 0 0 0 22 0 2566.23 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 329 350 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 1.9088E-05 47.648 1 0.24127 0.36651 NaN 1 Median NaN NaN NaN 0 0 Median 0.24127 0.36651 NaN 1 0 Median 12718000 10445000 2273900 0 0 0 12718000 10445000 2273900 2496 148;1499;590 2561 9054 13683;13684 13684 2 EFEDVVNILHSSYLEPTSVTNFNYR REKKALFQPLTPGSREFEDVVNILHSSYLE SSYLEPTSVTNFNYRRACLVHNELLEKEFT R E F Y R R 0 1 3 1 0 0 3 0 1 1 2 0 0 2 1 3 2 0 2 3 0 0 25 0 2972.4192 Q9UK61 Q9UK61 122 146 FAM208A Protein FAM208A yes yes 3 5.5778E-05 66.52 1 0.51223 0.71038 NaN 1 Median 0.51223 0.71038 NaN 1 0 Median NaN NaN NaN 0 0 Median 1847200 1063100 784050 1847200 1063100 784050 0 0 0 2497 1787 2562 9055 13685 13685 1 EFEEESKQPGVSEQQR DISSSLNSLADSNAREFEEESKQPGVSEQQ FEEESKQPGVSEQQRHQLKHRELFLSRQFE R E F Q R H 0 1 0 0 0 3 5 1 0 0 0 1 0 1 1 2 0 0 0 1 0 0 16 1 1905.8704 A0A024R534;O94776 A0A024R534 65 80 MTA2 Metastasis-associated protein MTA2 yes no 3 0.00010217 79.346 3 2 0.8654 1.2178 22.408 4 Median 0.80569 1.0533 8.5658 2 0 Median 0.97621 1.4842 16.022 2 0 Median 46844000 27000000 19844000 33692000 21156000 12535000 13153000 5843600 7309000 2498 133 2563 9056;9057;9058;9059;9060 13686;13687;13688;13689;13690;13691 13688 6 EFEFSQLPLK DSSSTAPAQLGKKGKEFEFSQLPLKVEFLE GKKGKEFEFSQLPLKVEFLECSAKGGRGDV K E F L K V 0 0 0 0 0 1 2 0 0 0 2 1 0 2 1 1 0 0 0 0 0 0 10 0 1236.639 Q549N5;Q9Y5M8;H7C4H2 Q549N5 231 240 SRPRB Signal recognition particle receptor subunit beta yes no 2 0.0026961 106.6 1 0.37992 0.4775 NaN 1 Median 0.37992 0.4775 NaN 1 0 Median NaN NaN NaN 0 0 Median 4409200 2988000 1421100 4409200 2988000 1421100 0 0 0 2499 1545 2564 9061 13692 13692 1 EFENPEVPREDQQQQHQQR RRKGGEADNLDEFLKEFENPEVPREDQQQQ PEVPREDQQQQHQQRDVIDEPIIEEPSRLQ K E F Q R D 0 2 1 1 0 6 4 0 1 0 0 0 0 1 2 0 0 0 0 1 0 0 19 1 2421.1058 A0A024R9J0;O60216 A0A024R9J0 419 437 RAD21 Double-strand-break repair protein rad21 homolog yes no 3;4 3.7514E-06 84.046 4 0.52411 0.70772 14.3 4 Median 0.52411 0.70772 14.3 4 0 Median NaN NaN NaN 0 0 Median 31101000 19233000 11868000 31101000 19233000 11868000 0 0 0 2500 223 2565 9062;9063;9064;9065 13693;13694;13695;13696;13697;13698;13699;13700;13701 13699 9 EFEQLRK YHKVVKKGKAKKALKEFEQLRKVNPAAALE GKAKKALKEFEQLRKVNPAAALEELEKIEK K E F R K V 0 1 0 0 0 1 2 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 7 1 948.50288 Q9BVJ6;B4E343;X6RJY0 Q9BVJ6 267 273 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 0.0040453 128.38 2 2 1.1948 1.5568 15.02 3 Median 1.2566 1.6546 8.6194 2 0 Median 0.78792 1.3045 NaN 1 0 Median 73606000 42864000 30742000 43556000 20539000 23017000 30050000 22325000 7725200 2501 1719 2566 9066;9067;9068;9069 13702;13703;13704;13705;13706 13705 5 EFEVYGPIK VARVNYDTTESKLRREFEVYGPIKRIHMVY ESKLRREFEVYGPIKRIHMVYSKRSGKPRG R E F I K R 0 0 0 0 0 0 2 1 0 1 0 1 0 1 1 0 0 0 1 1 0 0 9 0 1080.5492 M0QYR1;A8KAQ5;A0A024QZD5;P08621 M0QYR1 56 64 SNRNP70;SNRP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 2 0.020312 55.676 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3673300 0 3673300 0 0 0 3673300 0 3673300 2502 10 2567 9070 13707 13707 1 EFFDLR MGCLKKYETVQDILKEFFDLRLSYYGLRKE YETVQDILKEFFDLRLSYYGLRKEWLVGML K E F L R L 0 1 0 1 0 0 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 6 0 825.4021 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80;Q6W6M6;H7BZ82 Q71UH4 1014 1019 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.035781 105.42 4 0.60995 0.8143 10.106 4 Median 0.60995 0.8143 10.106 4 0 Median NaN NaN NaN 0 0 Median 58161000 34057000 24104000 58161000 34057000 24104000 0 0 0 2503 1437 2568 9071;9072;9073;9074 13708;13709;13710;13711 13711 4 EFFEVANDVIPNLLK IQDYNYCREDEEIYKEFFEVANDVIPNLLK EFFEVANDVIPNLLKEAASLLEAGEERPGE K E F L K E 1 0 2 1 0 0 2 0 0 1 2 1 0 2 1 0 0 0 0 2 0 0 15 0 1746.9192 A0A024R570;A0A024R5E3;A0A024R5D2;O00255;Q9UE24;E7EN32 A0A024R570 328 342 MEN1 Menin yes no 2 2.5753E-10 147.58 4 1.7684 2.2797 27.135 2 Median 1.7684 2.2797 27.135 2 0 Median NaN NaN NaN 0 0 Median 17553000 8901200 8651400 17553000 8901200 8651400 0 0 0 2504 135 2569 9075;9076;9077;9078 13712;13713;13714;13715 13712 4 EFFFNVYINK KRCPYSKFQIRELEREFFFNVYINKEKRLQ RELEREFFFNVYINKEKRLQLSRMLNLTDR R E F N K E 0 0 2 0 0 0 1 0 0 1 0 1 0 3 0 0 0 0 1 1 0 0 10 0 1319.655 O43248;Q14DW8;A0A087WWK9;P31277 O43248 250 259 HOXC11;HOXD11 Homeobox protein Hox-C11;Homeobox protein Hox-D11 yes no 2 0.028038 42.109 1 0.57115 0.71962 NaN 1 Median 0.57115 0.71962 NaN 1 0 Median NaN NaN NaN 0 0 Median 2459200 1614400 844840 2459200 1614400 844840 0 0 0 2505 1183 2570 9079 13716 13716 1 EFGATECINPQDFSK IIGVDINKDKFARAKEFGATECINPQDFSK EFGATECINPQDFSKPIQEVLIEMTDGGVD K E F S K P 1 0 1 1 1 1 2 1 0 1 0 1 0 2 1 1 1 0 0 0 0 0 15 0 1741.7618 Q6IRT1;Q6FI45;P11766;H0YAG8 Q6IRT1 234 248 ADH5 S-(hydroxymethyl)glutathione dehydrogenase;Alcohol dehydrogenase class-3 yes no 2 0.0011711 60.49 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2506 1258 2571 9080 13717 13717 1 EFHGNIIK DPPSAKAAIDWFDGKEFHGNIIKVSFATRR IDWFDGKEFHGNIIKVSFATRRPEFMRGGG K E F I K V 0 0 1 0 0 0 1 1 1 2 0 1 0 1 0 0 0 0 0 0 0 0 8 0 956.50797 B4E312;A0A075B7D9;Q92804 B4E312 110 117 TAF15 TATA-binding protein-associated factor 2N yes no 2 0.001449 114.6 2 0.60959 0.75723 0.55854 2 Median 0.60959 0.75723 0.55854 2 0 Median NaN NaN NaN 0 0 Median 32697000 21687000 11011000 32697000 21687000 11011000 0 0 0 2507 328 2572 9081;9082 13718;13719;13720;13721;13722 13718 5 EFIDACLNK NNPPTLVGDFTKSFKEFIDACLNKDPSFRP FTKSFKEFIDACLNKDPSFRPTAKELLKHK K E F N K D 1 0 1 1 1 0 1 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 9 0 1108.5223 Q9NWX4;Q8NBY1;B4E0Y9;Q9P289;Q499L9;Q96SR7 Q9NWX4 126 134 STK26;MST4 Serine/threonine-protein kinase 26 yes no 2 0.032869 43.246 1 0.55704 0.7079 NaN 1 Median 0.55704 0.7079 NaN 1 0 Median NaN NaN NaN 0 0 Median 7017200 4912900 2104300 7017200 4912900 2104300 0 0 0 2508 886 2573 9083 13723 13723 1 EFIGQQLILIIK EHRGDFSYIGNLMTKEFIGQQLILIIKSLD MTKEFIGQQLILIIKSLDTSEEGGRKKLLA K E F I K S 0 0 0 0 0 2 1 1 0 4 2 1 0 1 0 0 0 0 0 0 0 0 12 0 1413.8595 Q9BPX3;Q6NUR1 Q9BPX3 399 410 NCAPG Condensin complex subunit 3 yes no 2 8.6563E-29 191.45 4 0.77755 0.98881 11.985 4 Median 0.77755 0.98881 11.985 4 0 Median NaN NaN NaN 0 0 Median 255410000 147340000 108080000 255410000 147340000 108080000 0 0 0 2509 1706 2574 9084;9085;9086;9087 13724;13725;13726;13727;13728;13729;13730;13731 13729 8 EFIPCIFSSGIK IAGDDSTIVQVLEVKEFIPCIFSSGIKEDR EVKEFIPCIFSSGIKEDRISTINILLSTLK K E F I K E 0 0 0 0 1 0 1 1 0 3 0 1 0 2 1 2 0 0 0 0 0 0 12 0 1396.7061 O60287 O60287 222 233 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.047196 31.494 1 0.54514 0.70921 NaN 1 Median 0.54514 0.70921 NaN 1 0 Median NaN NaN NaN 0 0 Median 4907900 2934900 1973100 4907900 2934900 1973100 0 0 0 2510 1190 2575 9088 13732 13732 1 EFLQQQYR SAVLQRGIQNQAEPREFLQQQYRLFQTRLT QNQAEPREFLQQQYRLFQTRLTETHLPAQA R E F Y R L 0 1 0 0 0 3 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 8 0 1110.5458 B4DYG2;O43683;A0JLU2;A8K5A6;C9JRC7;C9JQA4 B4DYG2 114 121 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 yes no 2 0.0089196 76.847 1 0.70676 0.95878 NaN 1 Median 0.70676 0.95878 NaN 1 0 Median NaN NaN NaN 0 0 Median 6614600 4060100 2554500 6614600 4060100 2554500 0 0 0 2511 873 2576 9089 13733 13733 1 EFLVAGGEDFK EAPATINSASLHPEKEFLVAGGEDFKLYKY HPEKEFLVAGGEDFKLYKYDYNSGEELESY K E F F K L 1 0 0 1 0 0 2 2 0 0 1 1 0 2 0 0 0 0 0 1 0 0 11 0 1210.587 Q9Y3F4;B0AZV0;H0YH33 Q9Y3F4 236 246 STRAP Serine-threonine kinase receptor-associated protein yes no 2 0.0030657 96.143 4 2 0.4058 0.52318 164.19 3 Median 0.38898 0.49533 7.7362 2 0 Median 5.8398 8.4966 NaN 1 0 Median 42216000 24595000 17620000 30931000 23455000 7476100 11284000 1140100 10144000 2512 1818 2577 9090;9091;9092;9093;9094;9095 13734;13735;13736;13737;13738;13739;13740 13737 6 EFNAEVHR PHSTKRFPGYDSESKEFNAEVHRKHIMGQN GYDSESKEFNAEVHRKHIMGQNVADYMRYL K E F H R K 1 1 1 0 0 0 2 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 8 0 1000.4726 A2RUM7;P46777;B3KTM6;Q59GX9 A2RUM7 189 196 RPL5 60S ribosomal protein L5 yes no 2;3 1.1663E-07 170.24 8 4 0.66525 0.93298 21.354 12 Median 0.66902 0.92243 26.375 8 0 Median 0.61766 0.96491 6.8784 4 0 Median 506470000 301120000 205350000 367670000 215300000 152370000 138810000 85827000 52978000 2513 540 2578 9096;9097;9098;9099;9100;9101;9102;9103;9104;9105;9106;9107 13741;13742;13743;13744;13745;13746;13747;13748;13749;13750;13751;13752;13753;13754;13755;13756;13757;13758;13759;13760 13758 20 EFNAEVHRK PHSTKRFPGYDSESKEFNAEVHRKHIMGQN YDSESKEFNAEVHRKHIMGQNVADYMRYLM K E F R K H 1 1 1 0 0 0 2 0 1 0 0 1 0 1 0 0 0 0 0 1 0 0 9 1 1128.5676 A2RUM7;P46777;B3KTM6;Q59GX9 A2RUM7 189 197 RPL5 60S ribosomal protein L5 yes no 2;3 1.8566E-62 228.05 8 1 0.72895 0.97395 4.2738 9 Median 0.74089 0.98168 4.5387 8 0 Median 0.63271 0.95634 NaN 1 0 Median 923380000 525120000 398260000 918080000 521920000 396170000 5298100 3201900 2096300 2514 540 2579 9108;9109;9110;9111;9112;9113;9114;9115;9116 13761;13762;13763;13764;13765;13766;13767;13768;13769;13770;13771;13772;13773;13774;13775;13776;13777 13770 17 EFNAFVLDK KGNIAQMYHAPGKKREFNAFVLDKTYFGPY APGKKREFNAFVLDKTYFGPYDETTCIDWT R E F D K T 1 0 1 1 0 0 1 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 9 0 1081.5444 Q15269;A0A0B4J2E5 Q15269 130 138 PWP2 Periodic tryptophan protein 2 homolog yes no 2 0.0021653 85.731 3 2 0.83046 1.1377 7.7531 5 Median 0.91129 1.1377 10.328 3 0 Median 0.70937 1.1324 4.2229 2 0 Median 226100000 126350000 99751000 142200000 76764000 65432000 83909000 49590000 34319000 2515 1508 2580 9117;9118;9119;9120;9121 13778;13779;13780;13781;13782;13783;13784;13785 13782 8 EFNEDGALAVLQQFK VAHSDLDERAIEALKEFNEDGALAVLQQFK EFNEDGALAVLQQFKDSDLSHVQNKSAFLC K E F F K D 2 0 1 1 0 2 2 1 0 0 2 1 0 2 0 0 0 0 0 1 0 0 15 0 1707.8468 Q05CK9;Q59GL1;B2R8Z8;O60506;F6UXX1 Q05CK9 103 117 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 2 2.8872E-56 199.82 4 0.45952 0.58353 17.147 4 Median 0.45952 0.58353 17.147 4 0 Median NaN NaN NaN 0 0 Median 31301000 20039000 11262000 31301000 20039000 11262000 0 0 0 2516 718 2581 9122;9123;9124;9125 13786;13787;13788;13789;13790;13791;13792;13793 13789 8 EFPGFLENQK KGYLTKEDLRVLMEKEFPGFLENQKDPLAV VLMEKEFPGFLENQKDPLAVDKIMKDPDQC K E F Q K D 0 0 1 0 0 1 2 1 0 0 1 1 0 2 1 0 0 0 0 0 0 0 10 0 1207.5873 Q6FGE5;D3DV26;P60903 Q6FGE5 38 47 S100A10 Protein S100-A10 yes no 2 0.0022016 72.23 1 0.36579 0.46361 NaN 1 Median 0.36579 0.46361 NaN 1 0 Median NaN NaN NaN 0 0 Median 11384000 7679100 3704600 11384000 7679100 3704600 0 0 0 2517 985 2582 9126 13794 13794 1 EFQEELSR SARCSLEQKIKEKEKEFQEELSRQQRSFQT KIKEKEKEFQEELSRQQRSFQTLDQECIQM K E F S R Q 0 1 0 0 0 1 3 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 8 0 1036.4825 P49454 P49454 395 402 CENPF Centromere protein F yes yes 2 0.025855 53.754 1 1.5926 2.1689 NaN 1 Median 1.5926 2.1689 NaN 1 0 Median NaN NaN NaN 0 0 Median 4208000 1691000 2517000 4208000 1691000 2517000 0 0 0 2518 1351 2583 9127 13795 13795 1 EFQLTEENTK CYAESIDDQLNTLLKEFQLTEENTKLRYLT NTLLKEFQLTEENTKLRYLTCSLIEDMAAA K E F T K L 0 0 1 0 0 1 3 0 0 0 1 1 0 1 0 0 2 0 0 0 0 0 10 0 1237.5826 Q9NVV4;Q5T852 Q9NVV4 196 205 MTPAP Poly(A) RNA polymerase, mitochondrial yes no 2 5.9123E-23 187.22 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 726240 726240 0 726240 726240 0 0 0 0 2519 1764 2584 9128 13796 13796 1 EFSIDVGYER KWIKQYTGINAISKKEFSIDVGYERFLGPE AISKKEFSIDVGYERFLGPEIFFHPEFANP K E F E R F 0 1 0 1 0 0 2 1 0 1 0 0 0 1 0 1 0 0 1 1 0 0 10 0 1213.5615 A0A024RAI1;P61158;B4DXW1;Q59FV6;B4DT29;B4DTI0 A0A024RAI1 266 275 ACTR3 Actin-related protein 3 yes no 2 0.017638 85.67 2 1.9861 2.6607 NaN 1 Median 1.9861 2.6607 NaN 1 0 Median NaN NaN NaN 0 0 Median 18725000 8228900 10496000 18725000 8228900 10496000 0 0 0 2520 243 2585 9129;9130 13797;13798 13797 2 EFSITDVVPYPISLR CALQCAILSPAFKVREFSITDVVPYPISLR EFSITDVVPYPISLRWNSPAEEGSSDCEVF R E F L R W 0 1 0 1 0 0 1 0 0 2 1 0 0 1 2 2 1 0 1 2 0 0 15 0 1734.9192 O14992;A0A087WTS8;B4E0H6;B4E354;B4DT47;A0A087WYC1;B4DIZ3;B4DUS3;Q59GF8;V9HW33;B4DH02;P34932 O14992 391 405 HS24/p52;HSPA4;HEL-S-5a Heat shock 70 kDa protein 4 yes no 2 0.019039 54.471 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 699790 699790 0 699790 699790 0 0 0 0 2521 336 2586 9131 13799 13799 1 EFSPFGSITSAK IKNLDDTIDDEKLRKEFSPFGSITSAKVML LRKEFSPFGSITSAKVMLEDGRSKGFGFVC K E F A K V 1 0 0 0 0 0 1 1 0 1 0 1 0 2 1 3 1 0 0 0 0 0 12 0 1269.6241 B1ANR0;Q6IQ30;Q13310;H0Y5F5;Q15164;H0YEU6;Q147Y3;Q3B867;Q53GL4;Q59GZ7 B1ANR0 313 324 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 yes no 2 0.00023949 123.11 2 0.23524 0.29963 19.691 2 Median 0.23524 0.29963 19.691 2 0 Median NaN NaN NaN 0 0 Median 24886000 19132000 5754000 24886000 19132000 5754000 0 0 0 2522 676 2587 9132;9133 13800;13801 13800 2 EFSTNNPFK IAVSKMMMVLGAKWREFSTNNPFKGSSGAS LGAKWREFSTNNPFKGSSGASVAAAAAAAV R E F F K G 0 0 2 0 0 0 1 0 0 0 0 1 0 2 1 1 1 0 0 0 0 0 9 0 1082.5033 B3KY63;F5GWX5;A0A0C4DGG9;Q14839;F5H6N4;Q05CG6 B3KY63 185 193 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.0030682 104.75 3 0.71097 0.92566 0.17438 3 Plateau 0.71097 0.92566 0.17438 3 0 Plateau NaN NaN NaN 0 0 Median 32270000 18270000 14000000 32270000 18270000 14000000 0 0 0 2523 428 2588 9134;9135;9136 13802;13803;13804 13804 3 EFTEAVEAK LILDDVSLTHLTFGKEFTEAVEAKQVAQQE HLTFGKEFTEAVEAKQVAQQEAERARFVVE K E F A K Q 2 0 0 0 0 0 3 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 9 0 1022.492 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0;C9JW96;C9JZ20;E7ESE2;E9PCW0;A8K9G2 Q6PUJ7 178 186 HEL-S-54e;PHB Prohibitin yes no 1;2 1.3168E-22 185.72 6 2 0.62137 0.81206 59.761 7 Median 0.62132 0.81097 7.122 5 0 Median 1.8163 2.7659 2.2858 2 0 Median 518770000 303780000 215000000 475080000 287990000 187090000 43694000 15785000 27909000 2524 600 2589 9137;9138;9139;9140;9141;9142;9143;9144 13805;13806;13807;13808;13809;13810;13811;13812;13813;13814;13815;13816 13809 11 EFTNFLDTIIR EECIWYKVNNYEHGKEFTNFLDTIIRAECF EHGKEFTNFLDTIIRAECFLQEGFYSCEAF K E F I R A 0 1 1 1 0 0 1 0 0 2 1 0 0 2 0 0 2 0 0 0 0 0 11 0 1367.7085 B4DZL4;A0A024RCG4;Q92674 B4DZL4 413 423 FSHPRH1;CENPI Centromere protein I yes no 2 9.9959E-23 172.28 5 0.62113 0.86337 8.623 4 Median 0.62113 0.86337 8.623 4 0 Median NaN NaN NaN 0 0 Median 26328000 16092000 10235000 26328000 16092000 10235000 0 0 0 2525 294 2590 9145;9146;9147;9148;9149 13817;13818;13819;13820;13821;13822;13823 13821 7 EFTNVYIK KSRKEREAELGAKAKEFTNVYIKNFGEEVD ELGAKAKEFTNVYIKNFGEEVDDESLKELF K E F I K N 0 0 1 0 0 0 1 0 0 1 0 1 0 1 0 0 1 0 1 1 0 0 8 0 1012.5229 A0A087WTT1;A0A024R9C1;P11940;A0A024R9E2;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;B3KT93;H0YBN4;H0YAR2;B1ANR0;Q6IQ30;Q13310;H0Y5F5;H0YCC8 B1ANR0 189 196 PABPC1;PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 no no 2 0.011198 71.296 2 1 0.87851 1.1748 191.66 2 Median 0.23411 0.30297 NaN 1 0 Median 3.2967 4.5555 NaN 1 0 Median 31304000 25648000 5656200 26418000 24454000 1963400 4886500 1193700 3692800 2526 676;217 2591 9150;9151;9152 13824;13825;13826 13825 3 EFTPYDYSQSDFK LKISKKPKDPEPPEKEFTPYDYSQSDFKAF EKEFTPYDYSQSDFKAFAGNSKSKVSSQFD K E F F K A 0 0 0 2 0 1 1 0 0 0 0 1 0 2 1 2 1 0 2 0 0 0 13 0 1625.6886 Q01780 Q01780 814 826 EXOSC10 Exosome component 10 yes yes 2 0.00013665 115.57 3 0.71178 0.90224 20.105 3 Median 0.71178 0.90224 20.105 3 0 Median NaN NaN NaN 0 0 Median 15493000 8185100 7308000 15493000 8185100 7308000 0 0 0 2527 1433 2592 9153;9154;9155 13827;13828;13829;13830;13831 13827 5 EFVEAVLELR LKDDLGNTLEKKGGKEFVEAVLELRKKNGP KKGGKEFVEAVLELRKKNGPLEVAGAAVSA K E F L R K 1 1 0 0 0 0 3 0 0 0 2 0 0 1 0 0 0 0 0 2 0 0 10 0 1203.6499 O75367;Q59FH0;B4DJC3 O75367 240 249 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2 6.6452E-44 237.08 17 5 0.79957 1.1461 23.352 10 Median 0.81432 1.1278 28.44 7 0 Median 0.72945 1.1535 4.3641 3 0 Median 2556600000 1453700000 1103000000 1917100000 1063300000 853780000 639560000 390380000 249170000 2528 1198 2593 9156;9157;9158;9159;9160;9161;9162;9163;9164;9165;9166;9167;9168;9169;9170;9171;9172;9173;9174;9175;9176;9177 13832;13833;13834;13835;13836;13837;13838;13839;13840;13841;13842;13843;13844;13845;13846;13847;13848;13849;13850;13851;13852;13853;13854;13855;13856;13857;13858;13859;13860;13861;13862;13863;13864;13865 13840 34 EFVEAVLELRK LKDDLGNTLEKKGGKEFVEAVLELRKKNGP KGGKEFVEAVLELRKKNGPLEVAGAAVSAG K E F R K K 1 1 0 0 0 0 3 0 0 0 2 1 0 1 0 0 0 0 0 2 0 0 11 1 1331.7449 O75367;Q59FH0;B4DJC3 O75367 240 250 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2;3 6.187E-29 185.61 8 2 0.80123 1.0849 10.822 8 Median 0.80123 1.0467 10.457 6 0 Median 0.77606 1.1909 8.1299 2 0 Median 316370000 168000000 148380000 296780000 156190000 140590000 19592000 11808000 7783700 2529 1198 2594 9178;9179;9180;9181;9182;9183;9184;9185;9186;9187 13866;13867;13868;13869;13870;13871;13872;13873;13874;13875;13876;13877;13878;13879;13880;13881;13882;13883;13884 13875 19 EFVLPFLR GIPVAALLEPDEVLKEFVLPFLRLDVEEVD EPDEVLKEFVLPFLRLDVEEVDLSLRIFIQ K E F L R L 0 1 0 0 0 0 1 0 0 0 2 0 0 2 1 0 0 0 0 1 0 0 8 0 1019.5804 Q9HBB9;Q8WUM5;Q9HC39;I3L2C7;P57678 Q9HBB9 643 650 GEMIN4 Gem-associated protein 4 yes no 2 0.014218 66.087 1 0.39098 0.52974 NaN 1 Median 0.39098 0.52974 NaN 1 0 Median NaN NaN NaN 0 0 Median 3232500 2382800 849720 3232500 2382800 849720 0 0 0 2530 1667 2595 9188 13885 13885 1 EFVSASFDK HVSAVLDVDYSPTGKEFVSASFDKSIRIFP YSPTGKEFVSASFDKSIRIFPVDKSRSREV K E F D K S 1 0 0 1 0 0 1 0 0 0 0 1 0 2 0 2 0 0 0 1 0 0 9 0 1028.4815 A0A087WT20;Q9NV06;A0A087X1F8 A0A087WT20 448 456 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2 0.012953 61.679 2 1.2976 1.5771 NaN 1 Median 1.2976 1.5771 NaN 1 0 Median NaN NaN NaN 0 0 Median 38025000 21640000 16386000 38025000 21640000 16386000 0 0 0 2531 331 2596 9189;9190 13886;13887;13888 13886 3 EFYLSVYFFK CIAFGNEGVYVAAVREFYLSVYFFKKKTTS VAAVREFYLSVYFFKKKTTSRFTLSSSRNK R E F F K K 0 0 0 0 0 0 1 0 0 0 1 1 0 3 0 1 0 0 2 1 0 0 10 0 1341.6645 A8K330;Q8IWA0 A8K330 175 184 WDR75 WD repeat-containing protein 75 yes no 2 0.0023959 98.033 2 0.74787 0.92115 NaN 1 Median 0.74787 0.92115 NaN 1 0 Median NaN NaN NaN 0 0 Median 4479000 3811100 667920 4479000 3811100 667920 0 0 0 2532 588 2597 9191;9192 13889;13890 13890 2 EGAAEGPLDPSGYNPAK VKKEVKEEEPGAPGKEGAAEGPLDPSGYNP AAEGPLDPSGYNPAKNNYHPVEDACWKPGQ K E G A K N 3 0 1 1 0 0 2 3 0 0 1 1 0 0 3 1 0 0 1 0 0 0 17 0 1671.774 M0R0Q7;Q59HG7;F5GZ28;B4DM52;P18858;B4E135 M0R0Q7 253 269 LIG1 DNA ligase;DNA ligase 1 yes no 2 0.00017435 120.53 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3500400 3500400 0 3500400 3500400 0 0 0 0 2533 830 2598 9193;9194;9195 13891;13892;13893;13894 13891 4 EGAAHAFAQYNLDQFTPVK FNDVRLLLNNDNLLREGAAHAFAQYNLDQF HAFAQYNLDQFTPVKIEGYEDQVLITEHGD R E G V K I 4 0 1 1 0 2 1 1 1 0 1 1 0 2 1 0 1 0 1 1 0 0 19 0 2106.0171 Q53GE2;Q53GC7;A4D0V4;P47755;C9JUG7;F8W9N7;A0A0D9SET8 Q53GE2 48 66 CAPZA2 F-actin-capping protein subunit alpha-2 yes no 3 0.00031501 40.968 1 0.98324 1.2229 NaN 1 Median 0.98324 1.2229 NaN 1 0 Median NaN NaN NaN 0 0 Median 8047900 4421500 3626300 8047900 4421500 3626300 0 0 0 2534 545 2599 9196 13895 13895 1 EGAFSNFPISEETIK ESNSEIEQEIPVEQKEGAFSNFPISEETIK EGAFSNFPISEETIKLLKGRGVTFLFPIQA K E G I K L 1 0 1 0 0 0 3 1 0 2 0 1 0 2 1 2 1 0 0 0 0 0 15 0 1667.8043 Q9NR30;Q9BQ39;B4DED6;B4DW97;A0A087WVC1;K0J110;Q53FI9 Q9NR30 185 199 DDX21;DDX50;mcdrh Nucleolar RNA helicase 2;ATP-dependent RNA helicase DDX50 no no 2 4.4397E-28 189.24 4 2 0.68513 0.90486 3.4788 6 Median 0.70433 0.90486 2.2995 4 0 Median 0.5597 0.88342 6.4163 2 0 Median 666370000 419300000 247070000 254590000 149460000 105140000 411780000 269850000 141930000 2535 1756;1707 2600 9197;9198;9199;9200;9201;9202 13896;13897;13898;13899;13900;13901;13902;13903;13904;13905;13906;13907 13898 12 EGATVYATGTHAQVEDGR PRVIRCMTNTPVVVREGATVYATGTHAQVE TVYATGTHAQVEDGRLMEQLLSSVGFCTEV R E G G R L 3 1 0 1 0 1 2 3 1 0 0 0 0 0 0 0 3 0 1 2 0 0 18 0 1860.8602 E7D7X9;A0A024R8U9;P32322;Q2TU78;B7Z8T1;J3QKT4;J3KQ22;E2QRB3;E7D7Y0;A0A1B2JLU7;J3QL24;J3QR88;J3QLK9;J3QL23;J3QL32 E7D7X9 130 147 PYCR1;PIG45 Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 1, mitochondrial yes no 3 0.021741 13.427 1 1.0956 1.4289 NaN 1 Median NaN NaN NaN 0 0 Median 1.0956 1.4289 NaN 1 0 Median 5217700 2234400 2983400 0 0 0 5217700 2234400 2983400 2536 204 2601 9203 13908 13908 1 EGDAHPLGALPVGTLINNVESEPGR ILNSNHIGRMAVAAREGDAHPLGALPVGTL PVGTLINNVESEPGRGAQYIRAAGAGNVRS R E G G R G 2 1 2 1 0 0 3 4 1 1 3 0 0 0 3 1 1 0 0 2 0 0 25 0 2541.2823 C9IY40;Q5T653;A0A024RD44 C9IY40 178 202 MRPL2 39S ribosomal protein L2, mitochondrial yes no 3 3.8896E-06 65.213 2 0.33968 0.46396 29.428 2 Median 0.33968 0.46396 29.428 2 0 Median NaN NaN NaN 0 0 Median 12970000 9371400 3598400 12970000 9371400 3598400 0 0 0 2537 932 2602 9204;9205 13909;13910 13910 2 EGDDYEVIPNSNFYVSR QSCTVEVHFQKIIDKEGDDYEVIPNSNFYV DDYEVIPNSNFYVSRTACRDNTSVYHISGK K E G S R T 0 1 2 2 0 0 2 1 0 1 0 0 0 1 1 2 0 0 2 2 0 0 17 0 2002.8909 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9J578;C9JVD8 Q9NTJ3 171 187 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.5324E-34 190.78 4 2 0.64905 0.93848 8.5429 6 Median 0.68441 0.90404 4.641 4 0 Linear 0.63251 1.0356 6.8186 2 0 Median 513870000 310510000 203360000 293710000 174520000 119190000 220160000 135990000 84175000 2538 1760 2603 9206;9207;9208;9209;9210;9211 13911;13912;13913;13914;13915;13916;13917;13918;13919;13920;13921;13922 13913 12 EGDFNNLTAAAFHK GKVKYSRLAKYFFNKEGDFNNLTAAAFHKK KEGDFNNLTAAAFHKKSHLLVTGFASGIFH K E G H K K 3 0 2 1 0 0 1 1 1 0 1 1 0 2 0 0 1 0 0 0 0 0 14 0 1533.7212 Q15269;A0A0B4J2E5 Q15269 285 298 PWP2 Periodic tryptophan protein 2 homolog yes no 2;3 6.806E-05 72.434 4 1 0.78986 0.98577 13.148 4 Median 0.82438 1.0188 10.211 3 0 Median 0.5731 0.85054 NaN 1 0 Median 98164000 55856000 42308000 87278000 48612000 38666000 10886000 7243700 3642800 2539 1508 2604 9212;9213;9214;9215;9216 13923;13924;13925;13926;13927;13928;13929 13927 7 EGDGVYYNELETR KASKGYEENYFFIFREGDGVYYNELETRVR FREGDGVYYNELETRVRLSKRRAKAGVQSG R E G T R V 0 1 1 1 0 0 3 2 0 0 1 0 0 0 0 0 1 0 2 1 0 0 13 0 1543.6791 A0A024R0H6;Q8N7H5 A0A024R0H6 317 329 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 6.2978E-05 122.7 4 2 0.78815 1.0477 76.71 6 Median 0.86626 0.99409 11.658 4 0 Linear 3.0342 4.2693 1.3475 2 0 Median 84132000 39615000 44517000 63146000 34980000 28166000 20986000 4634800 16351000 2540 36 2605 9217;9218;9219;9220;9221;9222 13930;13931;13932;13933;13934;13935;13936;13937;13938;13939 13932 10 EGDLIAAQAR VREEFKELKARNTKKEGDLIAAQARLKDLE RNTKKEGDLIAAQARLKDLEALLNSKEAAL K E G A R L 3 1 0 1 0 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 10 0 1042.5407 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;Q5TCI8;H0YAB0 P02545 124 133 LMNA Prelamin-A/C;Lamin-A/C yes no 2 0.0013465 93.143 4 2 0.67944 0.93618 54.053 6 Median 0.63718 0.88038 6.4735 4 0 Median 1.5787 2.5198 0.86409 2 0 Median 380100000 209990000 170110000 299800000 181160000 118640000 80303000 28831000 51472000 2541 1229 2606 9223;9224;9225;9226;9227;9228 13940;13941;13942;13943;13944;13945;13946;13947;13948;13949 13944 10 EGDPLVFATVGSNR HNQPLFGVQFNWHSKEGDPLVFATVGSNRV KEGDPLVFATVGSNRVTLYECHSQGEIRLL K E G N R V 1 1 1 1 0 0 1 2 0 0 1 0 0 1 1 1 1 0 0 2 0 0 14 0 1460.726 O75530;B4DVW7;E9PJK2;B4DFK0 O75530 107 120 EED Polycomb protein EED yes no 2 1.9952E-07 120.03 4 0.77375 1.0349 1.2769 4 Median 0.77375 1.0349 1.2769 4 0 Median NaN NaN NaN 0 0 Median 73944000 39682000 34261000 73944000 39682000 34261000 0 0 0 2542 1203 2607 9229;9230;9231;9232 13950;13951;13952;13953;13954;13955 13954 6 EGDQTSNNIPADIVFVLK VKKGWKEGTKITFPKEGDQTSNNIPADIVF QTSNNIPADIVFVLKDKPHNIFKRDGSDVI K E G L K D 1 0 2 2 0 1 1 1 0 2 1 1 0 1 1 1 1 0 0 2 0 0 18 0 1958.9949 Q6FI51;Q6FHS4;P25685;M0R080 Q6FI51 223 240 DNAJB1 DnaJ homolog subfamily B member 1 yes no 2 2.4135E-09 85.554 2 0.44031 0.56469 NaN 1 Median 0.44031 0.56469 NaN 1 0 Median NaN NaN NaN 0 0 Median 7805800 6073700 1732100 7805800 6073700 1732100 0 0 0 2543 1297 2608 9233;9234 13956;13957 13956 2 EGDREAIVAALLTR APFLRQEFIRIRPNREGDREAIVAALLTRT REGDREAIVAALLTRTFTDHVMLFTQTKKQ R E G T R T 3 2 0 1 0 0 2 1 0 1 2 0 0 0 0 0 1 0 0 1 0 0 14 1 1512.826 B7Z6D5;B3GQE6;Q96GQ7;Q53G15 B7Z6D5 416 429 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 3 1.4571E-07 136.33 4 2 0.80513 1.1029 12.416 6 Median 0.83369 1.1397 4.6229 4 0 Median 0.59781 0.91281 3.6575 2 0 Median 214080000 118250000 95826000 157100000 81865000 75231000 56982000 36387000 20596000 2544 750 2609 9235;9236;9237;9238;9239;9240 13958;13959;13960;13961;13962;13963;13964;13965;13966;13967;13968;13969;13970 13961 13 EGDTIIVPGVEGPIVTQIR MGTTIDVILINGRLKEGDTIIVPGVEGPIV IIVPGVEGPIVTQIRGLLLPPPMKELRVKN K E G I R G 0 1 0 1 0 1 2 3 0 4 0 0 0 0 2 0 2 0 0 3 0 0 19 0 1992.0892 Q8N5A0;A0A087WUT6;O60841;B3KM86;D3DVI5 Q8N5A0 884 902 EIF5B Eukaryotic translation initiation factor 5B yes no 2 0.00039666 43.991 1 0.50938 0.66731 NaN 1 Median 0.50938 0.66731 NaN 1 0 Median NaN NaN NaN 0 0 Median 8002600 5247100 2755600 8002600 5247100 2755600 0 0 0 2545 345 2610 9241 13971 13971 1 EGDVLTLLESER DTSRSIIRNVKGPVREGDVLTLLESEREAR PVREGDVLTLLESEREARRLR_________ R E G E R E 0 1 0 1 0 0 3 1 0 0 3 0 0 0 0 1 1 0 0 1 0 0 12 0 1359.6882 B2R4R9;P62857 B2R4R9 52 63 RPS28 40S ribosomal protein S28 yes no 2 1.7426E-21 188.91 3 2 0.84953 1.1989 9.8434 5 Median 0.8728 1.1989 12.094 3 0 Median 0.72442 1.1856 5.496 2 0 Median 490140000 271630000 218510000 275330000 146080000 129250000 214810000 125550000 89260000 2546 687 2611 9242;9243;9244;9245;9246 13972;13973;13974;13975;13976;13977;13978;13979 13976 8 EGDVLTLLESEREAR DTSRSIIRNVKGPVREGDVLTLLESEREAR EGDVLTLLESEREARRLR____________ R E G A R R 1 2 0 1 0 0 4 1 0 0 3 0 0 0 0 1 1 0 0 1 0 0 15 1 1715.869 B2R4R9;P62857 B2R4R9 52 66 RPS28 40S ribosomal protein S28 yes no 3 0.01672 54.276 1 0.5757 0.80194 NaN 1 Median 0.5757 0.80194 NaN 1 0 Median NaN NaN NaN 0 0 Median 3652000 2049500 1602500 3652000 2049500 1602500 0 0 0 2547 687 2612 9247 13980;13981 13981 2 EGDVLTPEQAR KRGVVTLLSDYEVCKEGDVLTPEQARVLKL EVCKEGDVLTPEQARVLKLFGYEMAEFKVT K E G A R V 1 1 0 1 0 1 2 1 0 0 1 0 0 0 1 0 1 0 0 1 0 0 11 0 1213.5939 A0A024RAE1;Q9UKD2 A0A024RAE1 178 188 C1orf33;MRTO4 mRNA turnover protein 4 homolog yes no 2 2.5426E-06 137.05 4 2 0.67433 0.91507 9.414 5 Median 0.69593 0.95708 6.2048 3 0 Median 0.53168 0.83252 2.4766 2 0 Median 161210000 96182000 65026000 105390000 60219000 45173000 55816000 35963000 19853000 2548 240 2613 9248;9249;9250;9251;9252;9253 13982;13983;13984;13985;13986;13987;13988;13989;13990;13991;13992 13984 11 EGDYVLFHHEGGVDVGDVDAK HSQAEEFYVCIYATREGDYVLFHHEGGVDV FHHEGGVDVGDVDAKAQKLLVGVDEKLNPE R E G A K A 1 0 0 4 0 0 2 4 2 0 1 1 0 1 0 0 0 0 1 4 0 0 21 0 2257.0287 A0A024R1Y2;A0A024R1T9;Q4LE36;P53396 A0A024R1Y2 128 148 ACLY;ACLY variant protein ATP-citrate synthase yes no 3 0.00014874 69.986 1 0.66491 0.83844 NaN 1 Median 0.66491 0.83844 NaN 1 0 Median NaN NaN NaN 0 0 Median 3059600 1797300 1262300 3059600 1797300 1262300 0 0 0 2549 69 2614 9254 13993;13994 13993 2 EGEDSSVIHYDDK ELFKDEATDGGGDNKEGEDSSVIHYDDKAI NKEGEDSSVIHYDDKAIERLLDRNQDETED K E G D K A 0 0 0 3 0 0 2 1 1 1 0 1 0 0 0 2 0 0 1 1 0 0 13 0 1492.6318 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 1214 1226 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2;3 7.8004E-28 181.4 7 2 1.0215 1.4023 38.097 4 Median 0.78241 0.96205 34.796 2 0 Median 1.1155 1.6781 6.9082 2 0 Median 75868000 41593000 34275000 39714000 24365000 15350000 36154000 17229000 18925000 2550 428 2615 9255;9256;9257;9258;9259;9260;9261;9262;9263 13995;13996;13997;13998;13999;14000;14001;14002;14003;14004;14005;14006 13996 12 EGELPLEELLR NDAEAQRREIELLRREGELPLEELLRSLPP LLRREGELPLEELLRSLPPQLLEGPSSPSQ R E G L R S 0 1 0 0 0 0 4 1 0 0 4 0 0 0 1 0 0 0 0 0 0 0 11 0 1296.6925 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2;G1UI29;A0A087X0E3;Q6P4A2 A0A0A0MS59 130 140 SRCAP Helicase SRCAP yes no 2 0.0050547 90.906 3 0.50116 0.70003 24.882 2 Median 0.50116 0.70003 24.882 2 0 Median NaN NaN NaN 0 0 Median 5473600 4309500 1164100 5473600 4309500 1164100 0 0 0 2551 394 2616 9264;9265;9266 14007;14008;14009 14008 3 EGETVEPYK HLGVVEAYSGLTKKKEGETVEPYKVNLSQD GLTKKKEGETVEPYKVNLSQDLEHQLQNII K E G Y K V 0 0 0 0 0 0 3 1 0 0 0 1 0 0 1 0 1 0 1 1 0 0 9 0 1050.487 Q08211;Q58F26;Q6PJK6 Q08211 267 275 DHX9 ATP-dependent RNA helicase A yes no 2 0.0061291 92.439 2 0.74448 0.93584 4.7123 2 Median 0.74448 0.93584 4.7123 2 0 Median NaN NaN NaN 0 0 Median 68890000 39124000 29766000 68890000 39124000 29766000 0 0 0 2552 1448 2617 9267;9268 14010;14011;14012 14012 2 EGFLDTLVVLHR ADPATLTRPVHDAAREGFLDTLVVLHRAGA AAREGFLDTLVVLHRAGARLDVRDAWGRLP R E G H R A 0 1 0 1 0 0 1 1 1 0 3 0 0 1 0 0 1 0 0 2 0 0 12 0 1397.7667 J3QRG6;K7PML8;P42771;A7LNE7;K7ES20;L8E941;K7ENC6;D1LYX3;K7PPU3;P42772 J3QRG6 88 99 CDKN2A;CDKN2B Cyclin-dependent kinase inhibitor 2A;Cyclin-dependent kinase 4 inhibitor B no no 2;3 1.0935E-07 123.62 4 0.45734 0.64667 14.68 3 Median 0.45734 0.64667 14.68 3 0 Median NaN NaN NaN 0 0 Median 14731000 10700000 4030900 14731000 10700000 4030900 0 0 0 2553 1146 2618 9269;9270;9271;9272 14013;14014;14015;14016;14017 14017 5 EGGGDEPLNFLDPK EQRKLARQRSRAWLKEGGGDEPLNFLDPKV KEGGGDEPLNFLDPKVAQRVLATQPGPGRG K E G P K V 0 0 1 2 0 0 2 3 0 0 2 1 0 1 2 0 0 0 0 0 0 0 14 0 1486.694 B3KMR5;Q5JTH9;B3KY97;B3KPQ2;A0A087X0G0 B3KMR5 1111 1124 RRP12 RRP12-like protein yes no 2 1.4127E-05 117.98 4 0.98684 1.2412 9.5004 3 Median 0.98684 1.2412 9.5004 3 0 Median NaN NaN NaN 0 0 Median 43213000 25075000 18138000 43213000 25075000 18138000 0 0 0 2554 756 2619 9273;9274;9275;9276 14018;14019;14020;14021;14022;14023 14019 6 EGGLGPLNIPLLADVTRR DSQFTHLAWINTPRKEGGLGPLNIPLLADV LGPLNIPLLADVTRRLSEDYGVLKTDEGIA K E G R R L 1 2 1 1 0 0 1 3 0 1 4 0 0 0 2 0 1 0 0 1 0 0 18 1 1890.0687 B4DF70;V9HW12;P32119;A6NIW5 B4DF70 93 110 HEL-S-2a;PRDX2 Peroxiredoxin-2 yes no 3 0.0077492 72.615 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2555 801 2620 9277 14024 14024 1 EGGVLLTVDAK E G A K 1 0 0 1 0 0 1 2 0 0 2 1 0 0 0 0 1 0 0 2 0 0 11 0 1100.6077 REV__Q0D2K2 yes yes 2 0.022501 41.448 1 0.82486 1.0162 NaN 1 Median 0.82486 1.0162 NaN 1 0 Median NaN NaN NaN 0 0 Median 25513000 13561000 11952000 25513000 13561000 11952000 0 0 0 + 2556 1855 2621 9278 14025 14025 1 EGHLSPDIVAEQK PANFQYPAESVLAYKEGHLSPDIVAEQKKL YKEGHLSPDIVAEQKKLEAADLVIFQSGIL K E G Q K K 1 0 0 1 0 1 2 1 1 1 1 1 0 0 1 1 0 0 0 1 0 0 13 0 1421.7151 B4DLR8;Q3B792;P15559;H3BNV2;H3BRK3 B4DLR8 78 90 NQO1 NAD(P)H dehydrogenase [quinone] 1 yes no 2;3 1.576E-17 178.54 4 0.47359 0.57795 30.795 3 Plateau 0.47359 0.57795 30.795 3 0 Plateau NaN NaN NaN 0 0 Median 30832000 21343000 9488100 30832000 21343000 9488100 0 0 0 2557 829 2622 9279;9280;9281;9282 14026;14027;14028;14029;14030;14031;14032 14028 7 EGHPVYPQLRPGYIPIPVLHEGAENR ANGPSREGSRLPPAREGHPVYPQLRPGYIP GYIPIPVLHEGAENRQVHPFHVYPQPGMQR R E G N R Q 1 2 1 0 0 1 3 3 2 2 2 0 0 0 5 0 0 0 2 2 0 0 26 1 2937.525 O95817;C9JFK9 O95817 81 106 BAG3 BAG family molecular chaperone regulator 3 yes no 4 7.6709E-05 39.626 1 0.4246 0.55814 NaN 1 Median 0.4246 0.55814 NaN 1 0 Median NaN NaN NaN 0 0 Median 3696800 2299400 1397400 3696800 2299400 1397400 0 0 0 2558 1223 2623 9283 14033 14033 1 EGIIFLYECVMGMR VIDPYLVYHLRPHQKEGIIFLYECVMGMRM KEGIIFLYECVMGMRMNGRCGAILADEMGL K E G M R M 0 1 0 0 1 0 2 2 0 2 1 0 2 1 0 0 0 0 1 1 0 0 14 0 1716.8038 A0A087X0H2;A8K322;Q9Y620 A0A087X0H2 118 131 RAD54B DNA repair and recombination protein RAD54B yes no 2 0.011135 63.216 1 2.177 2.9675 NaN 1 Median 2.177 2.9675 NaN 1 0 Median NaN NaN NaN 0 0 Median 48219000 14469000 33750000 48219000 14469000 33750000 0 0 0 2559 370 2624 9284 14034 14034 121 1 EGINIFLDGYVPTENLR VPSAYGVVTMPFSVREGINIFLDGYVPTEN INIFLDGYVPTENLRFRDASLVFKVAETAN R E G L R F 0 1 2 1 0 0 2 2 0 2 2 0 0 1 1 0 1 0 1 1 0 0 17 0 1948.9894 P61221;D6R9I9 P61221 307 323 ABCE1 ATP-binding cassette sub-family E member 1 yes no 2 3.4852E-07 130.56 3 0.44863 0.62937 NaN 1 Median 0.44863 0.62937 NaN 1 0 Median NaN NaN NaN 0 0 Median 9675000 8958700 716230 9675000 8958700 716230 0 0 0 2560 1392 2625 9285;9286;9287 14035;14036;14037 14037 3 EGININR SERQKKTKAEGDRLKEGININRGLLCLGNV KAEGDRLKEGININRGLLCLGNVISALGDD K E G N R G 0 1 2 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 7 0 814.42972 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 262 268 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.030958 62.715 1 0.76704 1.0222 NaN 1 Median 0.76704 1.0222 NaN 1 0 Median NaN NaN NaN 0 0 Median 30854000 16986000 13868000 30854000 16986000 13868000 0 0 0 2561 1216 2626 9288 14038 14038 1 EGIPALDNFLDKL PSQVVAETRKRKGLKEGIPALDNFLDKL__ LKEGIPALDNFLDKL_______________ K E G K L - 1 0 1 2 0 0 1 1 0 1 3 1 0 1 1 0 0 0 0 0 0 0 13 1 1443.7609 P13639;Q8TA90;B4DPU3 P13639 846 858 EEF2 Elongation factor 2 yes no 2 6.1073E-07 129.89 1 0.61732 0.80489 NaN 1 Median 0.61732 0.80489 NaN 1 0 Median NaN NaN NaN 0 0 Median 65599000 43276000 22324000 65599000 43276000 22324000 0 0 0 2562 1264 2627 9289 14039 14039 1 EGIVQTEQIR RLDKERLAARLEGHKEGIVQTEQIRSLSEA LEGHKEGIVQTEQIRSLSEAMSVEKIAAIK K E G I R S 0 1 0 0 0 2 2 1 0 2 0 0 0 0 0 0 1 0 0 1 0 0 10 0 1171.6197 Q6P1J9;A0A1B0GUB2;B4DV47 Q6P1J9 162 171 CDC73 Parafibromin yes no 2 0.00043694 123.21 4 1 0.71881 0.97165 130.36 3 Median 0.70243 0.94764 3.5378 2 0 Median 6.5369 9.0579 NaN 1 0 Median 87095000 61335000 25759000 81035000 60575000 20460000 6059900 760760 5299100 2563 1590 2628 9290;9291;9292;9293;9294 14040;14041;14042;14043;14044;14045 14041 6 EGKEEAEETNVLPK GLSEEDDSLVDVYYREGKEEAEETNVLPKE REGKEEAEETNVLPKEKQTKPAEAPRLQLS R E G P K E 1 0 1 0 0 0 5 1 0 0 1 2 0 0 1 0 1 0 0 1 0 0 14 1 1571.7679 Q14690;B4DH82 Q14690 1506 1519 PDCD11 Protein RRP5 homolog yes no 2;3 4.4143E-14 141.37 3 2 1.0093 1.4123 9.5297 4 Median 1.0599 1.3047 3.2459 2 0 Median 0.96604 1.5289 3.2465 2 0 Median 38456000 18812000 19644000 15280000 6711300 8569100 23176000 12101000 11075000 2564 1494 2629 9295;9296;9297;9298;9299 14046;14047;14048;14049;14050;14051;14052 14050 7 EGLDEVAGIINDAK ELVSKIGDKNWKIRKEGLDEVAGIINDAKF KEGLDEVAGIINDAKFIQPNIGELPTALKG K E G A K F 2 0 1 2 0 0 2 2 0 2 1 1 0 0 0 0 0 0 0 1 0 0 14 0 1442.7253 Q14008 Q14008 879 892 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0026702 78.548 2 1.1173 1.4384 10.99 2 Median 1.1173 1.4384 10.99 2 0 Median NaN NaN NaN 0 0 Median 9551900 4149800 5402000 9551900 4149800 5402000 0 0 0 2565 1481 2630 9300;9301 14053;14054;14055 14054 3 EGLEIVK HGPSFPLKGITEQQKEGLEIVKMVMISLEG KGITEQQKEGLEIVKMVMISLEGEDGLDEI K E G V K M 0 0 0 0 0 0 2 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 7 0 786.44872 P13010;Q53T09 P13010 203 209 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 0.030687 97.473 1 0.52431 0.67584 NaN 1 Median 0.52431 0.67584 NaN 1 0 Median NaN NaN NaN 0 0 Median 37339000 24281000 13057000 37339000 24281000 13057000 0 0 0 2566 1262 2631 9302 14056 14056 1 EGLELPEDEEEK QLKEFDGKSLVSVTKEGLELPEDEEEKKKM VTKEGLELPEDEEEKKKMEESKAKFENLCK K E G E K K 0 0 0 1 0 0 6 1 0 0 2 1 0 0 1 0 0 0 0 0 0 0 12 0 1415.6304 A0A024RD80;P08238;B4DMA2;B4DGL0;Q58FF7;Q9H6X9;A8K3W9;K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q96HX7;Q58FF6 A0A024RD80 539 550 HSP90AB1;HSP90AB3P;EL52;HSP90AA1;HSP90AB4P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4 no no 2 3.2422E-10 142.43 4 1 0.44127 0.55628 116.66 5 Median 0.42804 0.54298 6.8502 4 0 Median 4.7947 7.4968 NaN 1 0 Median 298130000 159770000 138360000 210540000 144590000 65953000 87586000 15179000 72407000 2567 312;1155;598;1550 2632 9303;9304;9305;9306;9307 14057;14058;14059;14060;14061;14062;14063;14064;14065;14066;14067 14065 11 EGLELPEDEEEKK QLKEFDGKSLVSVTKEGLELPEDEEEKKKM TKEGLELPEDEEEKKKMEESKAKFENLCKL K E G K K K 0 0 0 1 0 0 6 1 0 0 2 2 0 0 1 0 0 0 0 0 0 0 13 1 1543.7253 A0A024RD80;P08238;B4DMA2;B4DGL0;Q58FF7;Q9H6X9;A8K3W9;K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q96HX7;Q58FF6 A0A024RD80 539 551 HSP90AB1;HSP90AB3P;EL52;HSP90AA1;HSP90AB4P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4 no no 2;3 1.1522E-24 181.53 6 1 0.34355 0.42228 10.945 4 Median 0.34355 0.42228 10.945 4 0 Median NaN NaN NaN 0 0 Median 100050000 70654000 29401000 97102000 70654000 26448000 2953200 0 2953200 2568 312;1155;598;1550 2633 9308;9309;9310;9311;9312;9313;9314 14068;14069;14070;14071;14072;14073;14074;14075;14076;14077;14078 14070 11 EGLEYIPLR PWFFKHVENYLKTNREGLEYIPLRHYYHRH YLKTNREGLEYIPLRHYYHRHTRSIFWELQ R E G L R H 0 1 0 0 0 0 2 1 0 1 2 0 0 0 1 0 0 0 1 0 0 0 9 0 1088.5866 Q3LIE7;B7ZAV4;Q15392 Q3LIE7 228 236 Nbla03646;DHCR24 Delta(24)-sterol reductase yes no 2 0.0020793 104.75 2 0.51468 0.72906 NaN 1 Median 0.51468 0.72906 NaN 1 0 Median NaN NaN NaN 0 0 Median 7235800 5266000 1969800 7235800 5266000 1969800 0 0 0 2569 922 2634 9315;9316 14079;14080 14080 2 EGLISQDGSSLEALLR SFPSIKPDTDQTLKKEGLISQDGSSLEALL GLISQDGSSLEALLRTDPLEKRGAPDPRVD K E G L R T 1 1 0 1 0 1 2 2 0 1 4 0 0 0 0 3 0 0 0 0 0 0 16 0 1686.8788 A0A024R582;J3KMZ8;Q92785 A0A024R582 109 124 DPF2 Zinc finger protein ubi-d4 yes no 2 0.0027357 51.875 1 1.0932 1.5754 NaN 1 Median NaN NaN NaN 0 0 Median 1.0932 1.5754 NaN 1 0 Median 11354000 5018900 6335400 0 0 0 11354000 5018900 6335400 2570 137 2635 9317 14081 14081 1 EGLLDQQQGDVK FRGGIFQPELLSSYKEGLLDQQQGDVKTGA SYKEGLLDQQQGDVKTGAMKNLLAPMDTVL K E G V K T 0 0 0 2 0 3 1 2 0 0 2 1 0 0 0 0 0 0 0 1 0 0 12 0 1328.6572 A8K4P8;Q14146;Q6PCC8 A8K4P8 256 267 URB2 Unhealthy ribosome biogenesis protein 2 homolog yes no 2 0.013428 94.409 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2839000 2839000 0 2839000 2839000 0 0 0 0 2571 606 2636 9318;9319 14082;14083 14082 2 EGLLGLQNLLK EVLNHCASSNWSERKEGLLGLQNLLKSQRT SERKEGLLGLQNLLKSQRTLSRVELKRLCE K E G L K S 0 0 1 0 0 1 1 2 0 0 5 1 0 0 0 0 0 0 0 0 0 0 11 0 1196.7129 B7Z5R7;B7Z4E5;B7Z7Q8;H0Y5T1;F8WA11;Q7Z460;Q6N029;Q96F87;B4DM73;E3W994;J3KR49;A0A0U1RQI6;E7ERI8;E7EW49;O75122 B7Z5R7 609 619 CLASP1;DKFZp686D11262;CLASP2 CLIP-associating protein 1;CLIP-associating protein 2 yes no 2 0.0012316 93.143 2 0.52308 0.65419 NaN 1 Median 0.52308 0.65419 NaN 1 0 Median NaN NaN NaN 0 0 Median 3070300 2270300 800090 3070300 2270300 800090 0 0 0 2572 907 2637 9320;9321 14084;14085;14086 14085 3 EGLPEDGTLYR YLPQEEKSPLFSVQREGLPEDGTLYRINRF SVQREGLPEDGTLYRINRFSSITAHPERWD R E G Y R I 0 1 0 1 0 0 2 2 0 0 2 0 0 0 1 0 1 0 1 0 0 0 11 0 1248.5986 Q8WUA4;Q53QN0;A0A087WZD8 Q8WUA4 363 373 GTF3C2 General transcription factor 3C polypeptide 2 yes no 2 0.014926 43.512 1 0.8268 1.1377 NaN 1 Median 0.8268 1.1377 NaN 1 0 Median NaN NaN NaN 0 0 Median 10113000 5527900 4585200 10113000 5527900 4585200 0 0 0 2573 1663 2638 9322 14087 14087 1 EGLPVALDK ERLTQDAVAKANQTKEGLPVALDKHILGFD KANQTKEGLPVALDKHILGFDTGDAVLNEA K E G D K H 1 0 0 1 0 0 1 1 0 0 2 1 0 0 1 0 0 0 0 1 0 0 9 0 940.52295 Q5RLJ0;Q549M8;Q9Y224 Q5RLJ0 177 185 C14orf166 UPF0568 protein C14orf166 yes no 2 0.00083875 109.48 5 0.70799 0.87879 8.5071 4 Median 0.70799 0.87879 8.5071 4 0 Median NaN NaN NaN 0 0 Median 104580000 57524000 47058000 104580000 57524000 47058000 0 0 0 2574 1544 2639 9323;9324;9325;9326;9327 14088;14089;14090;14091;14092;14093;14094 14093 7 EGLSACQQSGFPAVLSSK SEAGKESEMTDLTRKEGLSACQQSGFPAVL SACQQSGFPAVLSSKRRRISYQRDSDENLT K E G S K R 2 0 0 0 1 2 1 2 0 0 2 1 0 1 1 4 0 0 0 1 0 0 18 0 1864.8989 E9PEI0;Q69YH5;A8K8Z0;B7Z5Q5 E9PEI0 168 185 CDCA2 Cell division cycle-associated protein 2 yes no 2 1.4219E-10 122.93 4 0.77695 0.97702 4.6166 3 Plateau 0.77695 0.97702 4.6166 3 0 Plateau NaN NaN NaN 0 0 Median 20440000 11769000 8671400 20440000 11769000 8671400 0 0 0 2575 1023 2640 9328;9329;9330;9331 14095;14096;14097;14098;14099;14100 14095 6 EGLTSIEEVTK VRSQVMDEATALQLREGLTSIEEVTKNLQK LQLREGLTSIEEVTKNLQKFLEGTSCIAGV R E G T K N 0 0 0 0 0 0 3 1 0 1 1 1 0 0 0 1 2 0 0 1 0 0 11 0 1204.6187 Q15149;D3DWL0;Q96IE3 Q15149 4050 4060 PLEC;PLEC1 Plectin yes no 2 4.038E-12 144.65 4 0.63947 0.80425 4.8252 4 Median 0.63947 0.80425 4.8252 4 0 Median NaN NaN NaN 0 0 Median 129790000 76261000 53531000 129790000 76261000 53531000 0 0 0 2576 1507 2641 9332;9333;9334;9335 14101;14102;14103;14104;14105;14106;14107 14105 7 EGLVPLSVSSGK IHSPNIQDSSFDSVREGLVPLSVSSGKNVI SVREGLVPLSVSSGKNVIIKENFALECSPA R E G G K N 0 0 0 0 0 0 1 2 0 0 2 1 0 0 1 3 0 0 0 2 0 0 12 0 1171.6449 Q562F6;B7Z7S9 Q562F6 1157 1168 SGOL2 Shugoshin-like 2 yes no 2 0.050208 38.885 2 0.79354 1.168 NaN 1 Median NaN NaN NaN 0 0 Median 0.79354 1.168 NaN 1 0 Median 11725000 4233400 7491600 0 0 0 11725000 4233400 7491600 2577 1546 2642 9336;9337 14108;14109 14108 2 EGMFNNANVLFK RTHFTHSQFIVVSLKEGMFNNANVLFKTKF SLKEGMFNNANVLFKTKFVDGVSTVARFTQ K E G F K T 1 0 3 0 0 0 1 1 0 0 1 1 1 2 0 0 0 0 0 1 0 0 12 0 1382.6653 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1 A0A024R158 1147 1158 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 3.8313E-05 134.77 4 4 0.63761 0.91046 10.028 8 Median 0.73534 0.93595 10.68 4 0 Median 0.56958 0.894 7.2307 4 0 Median 137770000 86519000 51250000 26561000 15288000 11273000 111210000 71231000 39977000 2578 50 2643;2644 9338;9339;9340;9341;9342;9343;9344;9345 14110;14111;14112;14113;14114;14115;14116;14117;14118 14111 9 8 EGNSPSFFNPEEAATVTSYLK GFPIIFHGVMGKDEREGNSPSFFNPEEAAT FFNPEEAATVTSYLKLLLAPSSKKGKARLS R E G L K L 2 0 2 0 0 0 3 1 0 0 1 1 0 2 2 3 2 0 1 1 0 0 21 0 2287.0645 B7Z700;Q5JR04;Q9HCE1;B3KQ43 B7Z700 726 746 MOV10 Putative helicase MOV-10 yes no 2 4.2674E-26 150.76 3 0.92976 1.1895 15.816 3 Median 0.92976 1.1895 15.816 3 0 Median NaN NaN NaN 0 0 Median 7794100 3788400 4005700 7794100 3788400 4005700 0 0 0 2579 916 2645 9346;9347;9348 14119;14120;14121;14122;14123;14124 14119 6 EGNVPNIIIAGPPGTGK VGNEDTVSRLEVFAREGNVPNIIIAGPPGT NVPNIIIAGPPGTGKTTSILCLARALLGPA R E G G K T 1 0 2 0 0 0 1 4 0 3 0 1 0 0 3 0 1 0 0 1 0 0 17 0 1632.8835 Q75MT5;B5BUD2;P35250 Q75MT5 66 82 RFC2 Replication factor C subunit 2 yes no 2 0.00024179 60.345 4 2 0.49911 0.6301 56.117 5 Median 0.49911 0.6301 9.5993 3 0 Plateau 1.0856 1.6218 11.624 2 0 Median 38661000 19106000 19556000 21207000 10911000 10296000 17454000 8194400 9259800 2580 898 2646 9349;9350;9351;9352;9353;9354 14125;14126;14127;14128;14129;14130;14131 14128 7 EGPLCDELIR SVKDSIVQGFQWGTREGPLCDELIRNVKFK QWGTREGPLCDELIRNVKFKILDAVVAQEP R E G I R N 0 1 0 1 1 0 2 1 0 1 2 0 0 0 1 0 0 0 0 0 0 0 10 0 1200.5809 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;K7EP67;K7EJ74 B4DZB1 727 736 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.0037227 71.614 2 0.56625 0.75867 8.1855 2 Median 0.56625 0.75867 8.1855 2 0 Median NaN NaN NaN 0 0 Median 21073000 13684000 7389700 21073000 13684000 7389700 0 0 0 2581 654 2647 9355;9356 14132;14133 14133 2 EGPSGSGDSQLSASSR PPVPQGEAEEDSQGKEGPSGSGDSQLSASS GPSGSGDSQLSASSRSESGRMKKSDNKMGI K E G S R S 1 1 0 1 0 1 1 3 0 0 1 0 0 0 1 6 0 0 0 0 0 0 16 0 1520.6703 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 743 758 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 3.1468E-09 90.412 1 1 0.73071 0.97549 31.9 2 Median 0.55506 0.7785 NaN 1 0 Median 0.96193 1.2223 NaN 1 0 Median 9998200 5214300 4783800 5282200 3083900 2198300 4716000 2130500 2585600 2582 1457 2648 9357;9358 14134;14135;14136 14135 3 EGPYSISVLYGDEEVPR DNADGTQTVNYVPSREGPYSISVLYGDEEV PYSISVLYGDEEVPRSPFKVKVLPTHDASK R E G P R S 0 1 0 1 0 0 3 2 0 1 1 0 0 0 2 2 0 0 2 2 0 0 17 0 1908.9105 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1516 1532 FLNA;FLJ00119 Filamin-A yes no 2 4.7482E-13 138.02 4 1 0.75382 1.0086 45.945 5 Median 0.74282 0.9915 6.2209 4 0 Median 1.981 2.8003 NaN 1 0 Median 100660000 54904000 45760000 93237000 51500000 41737000 7427700 3404000 4023700 2583 1287 2649 9359;9360;9361;9362;9363 14137;14138;14139;14140;14141;14142 14141 6 EGQGEGETQEAAAAAAAAR GPAGRGDGDSGRSQREGQGEGETQEAAAAA EGETQEAAAAAAAARRQEQTLRDATMEVQR R E G A R R 8 1 0 0 0 2 4 3 0 0 0 0 0 0 0 0 1 0 0 0 0 0 19 0 1786.8082 P58107 P58107 2614 2632 EPPK1 Epiplakin yes no 2 5.8558E-284 370.66 4 2 0.57982 0.77722 121.69 6 Median 0.55021 0.74442 5.3111 4 0 Median 5.0485 7.9282 2.1714 2 0 Median 146240000 63081000 83162000 88932000 53024000 35908000 57311000 10057000 47254000 2584 1386 2650 9364;9365;9366;9367;9368;9369 14143;14144;14145;14146;14147;14148;14149;14150;14151;14152;14153;14154 14146 12 EGQGEGETQEAAAATAAAR GPAGRGDGDSGRSQREGQGEGETQEAAAAT EGETQEAAAATAAARRQEQTLRDATMEVQR R E G A R R 7 1 0 0 0 2 4 3 0 0 0 0 0 0 0 0 2 0 0 0 0 0 19 0 1816.8187 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 3681 3699 EPPK1 Epiplakin no no 2 4.575E-23 183 4 2 5.2299 7.3383 0.79459 2 Median NaN NaN NaN 0 0 Median 5.2299 7.3383 0.79459 2 0 Median 15305000 2115800 13189000 1988800 0 1988800 13316000 2115800 11200000 2585 373;1386 2651 9370;9371;9372;9373;9374;9375 14155;14156;14157;14158;14159;14160 14157 6 EGQGFAFR TWRPNHPQAFVGSVREGQGFAFRRKLKIQQ AFVGSVREGQGFAFRRKLKIQQSYKKLLRK R E G F R R 1 1 0 0 0 1 1 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 8 0 910.42972 Q9P031;F8VNY5 Q9P031 51 58 CCDC59 Thyroid transcription factor 1-associated protein 26 yes no 2 0.046151 43.124 1 0.69297 0.89925 NaN 1 Median NaN NaN NaN 0 0 Median 0.69297 0.89925 NaN 1 0 Median 3458100 2018000 1440100 0 0 0 3458100 2018000 1440100 2586 1774 2652 9376 14161 14161 1 EGRPSGEAFVELESEDEVK KIQNGAQGIRFIYTREGRPSGEAFVELESE SGEAFVELESEDEVKLALKKDRETMGHRYV R E G V K L 1 1 0 1 0 0 6 2 0 0 1 1 0 1 1 2 0 0 0 2 0 0 19 1 2105.9753 G8JLB6;P31943;E9PCY7;D6RIU0;D6RBM0;D6RAM1;D6R9T0;D6RFM3;D6RIT2;D6RDU3;D6RJ04;D6RIH9;E7EQJ0;E7EN40;D6RDL0 G8JLB6 50 68 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 3 1.5758E-15 130.09 4 0.36069 0.47523 5.0289 4 Median 0.36069 0.47523 5.0289 4 0 Median NaN NaN NaN 0 0 Median 296500000 216430000 80070000 296500000 216430000 80070000 0 0 0 2587 1084 2653 9377;9378;9379;9380 14162;14163;14164;14165;14166;14167;14168 14165 7 EGRPSGEAFVELESEEEVK KIQNGTSGIRFIYTREGRPSGEAFVELESE SGEAFVELESEEEVKLALKKDRETMGHRYV R E G V K L 1 1 0 0 0 0 7 2 0 0 1 1 0 1 1 2 0 0 0 2 0 0 19 1 2119.991 P55795;B4DFK9;B4DP00 P55795 50 68 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes no 3 1.6917E-09 123 4 2 0.83952 1.2225 145.96 4 Median 0.26277 0.34427 5.1209 2 0 Median 2.6822 4.31 4.1003 2 0 Median 131450000 100390000 31060000 100880000 89729000 11153000 30571000 10664000 19907000 2588 1380 2654 9381;9382;9383;9384;9385;9386 14169;14170;14171;14172;14173;14174;14175;14176;14177;14178 14172 10 EGSASTEVLR RDMCLEKDTLGLFLREGSASTEVLRTEAEQ GLFLREGSASTEVLRTEAEQCKNLELKDLL R E G L R T 1 1 0 0 0 0 2 1 0 0 1 0 0 0 0 2 1 0 0 1 0 0 10 0 1047.5197 O75643;A4FU77;Q9H8B9 O75643 754 763 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 4.4329E-07 96.331 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2589 1206 2655 9387;9388 14179;14180 14179 2 EGSLVINSK KITKNLGFGMGIEFREGSLVINSKNQYKLK MGIEFREGSLVINSKNQYKLKKGMVFSINL R E G S K N 0 0 1 0 0 0 1 1 0 1 1 1 0 0 0 2 0 0 0 1 0 0 9 0 945.51311 Q9Y5B9;Q0VGA3 Q9Y5B9 358 366 SUPT16H FACT complex subunit SPT16 yes no 2 1.5733E-05 126.62 4 2 0.80357 1.0965 7.1476 5 Median 0.81276 1.0546 3.6551 3 0 Median 0.74796 1.1906 2.403 2 0 Median 334880000 180460000 154420000 258420000 136060000 122360000 76463000 44404000 32059000 2590 1829 2656 9389;9390;9391;9392;9393;9394 14181;14182;14183;14184;14185;14186;14187;14188;14189 14186 9 EGTLIEDSPDFR CRVKGAPSPKVEWYREGTLIEDSPDFRILQ WYREGTLIEDSPDFRILQKKPRSMAEPEEI R E G F R I 0 1 0 2 0 0 2 1 0 1 1 0 0 1 1 1 1 0 0 0 0 0 12 0 1377.6412 A0A087WX60;Q86TC9;A5PKT7 A0A087WX60 177 188 MYPN Myopalladin yes no 2 3.7682E-05 87.913 2 0.2732 0.37131 NaN 1 Median 0.2732 0.37131 NaN 1 0 Median NaN NaN NaN 0 0 Median 5489000 4459000 1030000 5489000 4459000 1030000 0 0 0 2591 356 2657 9395;9396 14190;14191 14191 2 EGTLTQVPLAPPPPGAPPSPAPAR ESDLAPSDKEAPTPKEGTLTQVPLAPPPPG APPPPGAPPSPAPARFTARGGRVFTPRGVP K E G A R F 4 1 0 0 0 1 1 2 0 0 2 0 0 0 9 1 2 0 0 1 0 0 24 0 2317.243 P48634;B4DLY2 P48634 1129 1152 PRRC2A Protein PRRC2A yes no 2 0.00084248 44.691 2 1.1038 1.5587 20.545 2 Median 1.1038 1.5587 20.545 2 0 Median NaN NaN NaN 0 0 Median 7877900 4111100 3766800 7877900 4111100 3766800 0 0 0 2592 1348 2658 9397;9398 14192;14193 14193 2 EGTSVLEHTSDGFPENK TLGMMDMLFATMRRKEGTSVLEHTSDGFPE TSVLEHTSDGFPENKKIES___________ K E G N K K 0 0 1 1 0 0 3 2 1 0 1 1 0 1 1 2 2 0 0 1 0 0 17 0 1845.8381 Q8TED0;H0Y8P4 Q8TED0 498 514 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2;3 4.6723E-06 81.709 5 0.98564 1.2364 4.5749 4 Median 0.98564 1.2364 4.5749 4 0 Median NaN NaN NaN 0 0 Median 127960000 66189000 61774000 127960000 66189000 61774000 0 0 0 2593 1660 2659 9399;9400;9401;9402;9403 14194;14195;14196;14197;14198;14199;14200;14201 14201 8 EGVDESFIK ILAMNHLKKIMKTSKEGVDESFIKEAVLAR IMKTSKEGVDESFIKEAVLARLGDDNIDVV K E G I K E 0 0 0 1 0 0 2 1 0 1 0 1 0 1 0 1 0 0 0 1 0 0 9 0 1022.492 B2RWN5;Q9H583;Q5T3Q7 B2RWN5 511 519 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.0018021 91.853 3 2 0.7214 0.9893 5.9115 4 Median 0.82797 1.0444 4.8316 2 0 Median 0.6338 0.95629 1.973 2 0 Median 102370000 52286000 50084000 68495000 31739000 36756000 33876000 20547000 13328000 2594 748 2660 9404;9405;9406;9407;9408 14202;14203;14204;14205;14206;14207;14208;14209 14207 8 EGVEHQLRR FIVALKVLFKSQIEKEGVEHQLRREIEIQA KSQIEKEGVEHQLRREIEIQAHLHHPNILR K E G R R E 0 2 0 0 0 1 2 1 1 0 1 0 0 0 0 0 0 0 0 1 0 0 9 1 1122.5894 B2RC06;J3KT86;Q96GD4;J3KTD6;J3QLN8;J3QR41 B2RC06 116 124 AURKB Aurora kinase B no no 3 0.0096219 45.161 1 0.98455 1.3333 NaN 1 Median 0.98455 1.3333 NaN 1 0 Median NaN NaN NaN 0 0 Median 32516000 17972000 14544000 32516000 17972000 14544000 0 0 0 2595 731;1686 2661 9409 14210 14210 1 EGVVGPELHHK DPVRNRRLTVNEAVKEGVVGPELHHKLLSA EAVKEGVVGPELHHKLLSAERAVTGYKDPY K E G H K L 0 0 0 0 0 0 2 2 2 0 1 1 0 0 1 0 0 0 0 2 0 0 11 0 1200.6251 Q15149;D3DWL0 Q15149 2893 2903 PLEC;PLEC1 Plectin yes no 2;3 0.00054607 89.029 6 0.70981 0.89966 6.9855 4 Median 0.70981 0.89966 6.9855 4 0 Median NaN NaN NaN 0 0 Median 92028000 57225000 34803000 92028000 57225000 34803000 0 0 0 2596 1507 2662 9410;9411;9412;9413;9414;9415 14211;14212;14213;14214;14215;14216;14217;14218 14216 8 EGYNNPPISGENLIGLSR DAPVDYFYRPETQHREGYNNPPISGENLIG NNPPISGENLIGLSRARRPHNAIFVNFEDE R E G S R A 0 1 3 0 0 0 2 3 0 2 2 0 0 0 2 2 0 0 1 0 0 0 18 0 1928.9592 Q5T7U1;Q9Y5Q8;Q5T7U0;B7Z1V3;Q5T7U4 Q5T7U1 192 209 GTF3C5 General transcription factor 3C polypeptide 5 yes no 2 1.32E-12 130.27 5 0.42574 0.58518 2.4677 2 Median 0.42574 0.58518 2.4677 2 0 Median NaN NaN NaN 0 0 Median 13941000 10743000 3197900 13941000 10743000 3197900 0 0 0 2597 1572 2663 9416;9417;9418;9419;9420 14219;14220;14221;14222;14223 14222 5 EGYVLQATCER QDQLRVALGREQSAREGYVLQATCERGFAA QSAREGYVLQATCERGFAAMEETHQKKIED R E G E R G 1 1 0 0 1 1 2 1 0 0 1 0 0 0 0 0 1 0 1 1 0 0 11 0 1324.6082 B9EGI2;U6FSN9;Q6WCQ1;J3KSW8;Q8N236 B9EGI2 715 725 MPRIP;Mprip-Ntrk1 fusion gene Tyrosine-protein kinase receptor;Myosin phosphatase Rho-interacting protein yes no 2 0.00040982 72.325 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2598 928 2664 9421 14224 14224 1 EHALLAYTLGVK VGEFEAGISKNGQTREHALLAYTLGVKQLI QTREHALLAYTLGVKQLIVGVNKMDSTEPP R E H V K Q 2 0 0 0 0 0 1 1 1 0 3 1 0 0 0 0 1 0 1 1 0 0 12 0 1313.7343 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;P68104;A8K9C4;Q5VTE0;Q96RE1;Q53GE9;Q53GA1;Q53G85;B4DV42;Q8IUB0;Q53HR1;Q9NZS6;A0A087WV01;Q9H2I7;Q53G89;Q16577;A9X7H1;Q05639;Q59GP5 Q6IPT9 135 146 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1;EEF1A2 Elongation factor 1-alpha;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 yes no 2;3 4.9378E-52 242.49 11 5 0.38692 0.49622 113.25 9 Median 0.38661 0.49125 6.172 7 0 Median 4.0775 6.4327 1.7023 2 0 Median 2332800000 1357800000 974960000 1811800000 1269600000 542220000 520910000 88170000 432740000 2599 1421 2665 9422;9423;9424;9425;9426;9427;9428;9429;9430;9431;9432;9433;9434;9435;9436;9437 14225;14226;14227;14228;14229;14230;14231;14232;14233;14234;14235;14236;14237;14238;14239;14240;14241;14242;14243;14244;14245;14246;14247;14248;14249;14250;14251;14252;14253;14254;14255 14231 31 EHCVCVQGNYIK ILDPKKQLVRHRLFREHCVCVQGNYIKDLN LFREHCVCVQGNYIKDLNILGRDLSKTIII R E H I K D 0 0 1 0 2 1 1 1 1 1 0 1 0 0 0 0 0 0 1 2 0 0 12 0 1505.6755 A0A024R5Q8;Q05D32 A0A024R5Q8 377 388 CTDSPL2 CTD small phosphatase-like protein 2 yes no 2 0.00012792 122.96 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2600 149 2666 9438 14256 14256 1 EHELLEQQK QQEERAKQQGDHSLKEHELLEQQKRAAVLL GDHSLKEHELLEQQKRAAVLLEQERQQEIA K E H Q K R 0 0 0 0 0 2 3 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1152.5775 Q13435;E9PJ04;H0YCG1;E9PJT3 Q13435 174 182 SF3B2 Splicing factor 3B subunit 2 yes no 2 0.0084175 67.993 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 776080 0 776080 0 0 0 776080 0 776080 2601 1470 2667 9439 14257 14257 1 EHEVTIFVR KGIVRAIRDYQGPLKEHEVTIFVRRGGPNY YQGPLKEHEVTIFVRRGGPNYQEGLRVMGE K E H V R R 0 1 0 0 0 0 2 0 1 1 0 0 0 1 0 0 1 0 0 2 0 0 9 0 1128.5928 A0A024R1Y2;A0A024R1T9;Q4LE36;P53396;K7EIE7 A0A024R1Y2 370 378 ACLY;ACLY variant protein ATP-citrate synthase yes no 2 0.012021 60.436 1 0.45917 0.60251 NaN 1 Median 0.45917 0.60251 NaN 1 0 Median NaN NaN NaN 0 0 Median 8183500 5413400 2770100 8183500 5413400 2770100 0 0 0 2602 69 2668 9440 14258 14258 1 EHFQHVAAPYIAK YRDPLYEIVRKHIYREHFQHVAAPYIAKAG YREHFQHVAAPYIAKAGEKSLNGAVPLGSN R E H A K A 3 0 0 0 0 1 1 0 2 1 0 1 0 1 1 0 0 0 1 1 0 0 13 0 1509.7728 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 187 199 ADNP Activity-dependent neuroprotector homeobox protein yes no 3 0.038953 18.021 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1786300 1786300 0 0 0 0 1786300 1786300 0 2603 729 2669 9441 14259 14259 1 EHFSSEVTISNLLNLFQR IDVVLSAISAFEIFKEHFSSEVTISNLLNL SSEVTISNLLNLFQRAELSKNGEWYEVLKI K E H Q R A 0 1 2 0 0 1 2 0 1 1 3 0 0 2 0 3 1 0 0 1 0 0 18 0 2133.0855 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 546 563 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 9.9584E-55 177.39 3 0.89807 1.2112 3.4181 3 Median 0.89807 1.2112 3.4181 3 0 Median NaN NaN NaN 0 0 Median 54147000 27721000 26427000 54147000 27721000 26427000 0 0 0 2604 748 2670 9442;9443;9444 14260;14261;14262;14263;14264 14264 5 EHGAFDAVK TDTESELDLISRLSREHGAFDAVKCTHWAE ISRLSREHGAFDAVKCTHWAEGGKGALALA R E H V K C 2 0 0 1 0 0 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 9 0 972.46649 A0A024R652;F5H2F4;B7Z809;P11586 A0A024R652 776 784 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.026442 47.869 1 4.6646 6.4515 NaN 1 Median NaN NaN NaN 0 0 Median 4.6646 6.4515 NaN 1 0 Median 3709600 515220 3194400 0 0 0 3709600 515220 3194400 2605 154 2671 9445 14265 14265 1 EHGLNPDVVQNIQDICNSK RSHNLMDRKVLAIMREHGLNPDVVQNIQDI NPDVVQNIQDICNSKHMQKNPPGPRAPSSH R E H S K H 0 0 3 2 1 2 1 1 1 2 1 1 0 0 1 1 0 0 0 2 0 0 19 0 2179.0328 Q7Z2W4;A8K9U6;C9J6P4 Q7Z2W4 204 222 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 3 3.1715E-13 103.73 3 0.61221 0.77273 8.7266 3 Median 0.61221 0.77273 8.7266 3 0 Median NaN NaN NaN 0 0 Median 43239000 24663000 18576000 43239000 24663000 18576000 0 0 0 2606 1613 2672 9446;9447;9448 14266;14267;14268;14269;14270;14271;14272 14269 7 EHIAASVSIPSEK RTFIVGAQMNVKEFKEHIAASVSIPSEKQR FKEHIAASVSIPSEKQRLIYQGRVLQDDKK K E H E K Q 2 0 0 0 0 0 2 0 1 2 0 1 0 0 1 3 0 0 0 1 0 0 13 0 1366.7092 F6S6P2;X6REW1;A0A0G2JJM1;A0A0G2JL47;A0A024RCR6;A0A0G2JK23;P46379;F6TC96;F6UR09;F6U1F2;F6XTU0;A0A0G2JJR8;A0A1B0GX79;F6WML8;F6VEM6;F6X9W3;F6U341 F6S6P2 44 56 BAG6;BAT3 Large proline-rich protein BAG6 yes no 2 0.0010147 64.103 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9529900 7260300 2269600 7260300 7260300 0 2269600 0 2269600 2607 301 2673 9449;9450;9451;9452 14273;14274;14275;14276 14274 4 EHIDNFLEQLR YLIRKFMFGFPENWKEHIDNFLEQLRAGEK ENWKEHIDNFLEQLRAGEKNREKTKQKQKT K E H L R A 0 1 1 1 0 1 2 0 1 1 2 0 0 1 0 0 0 0 0 0 0 0 11 0 1412.7048 Q6P0N0;G5E9K5 Q6P0N0 469 479 MIS18BP1 Mis18-binding protein 1 yes no 2 0.0025012 64.297 1 0.74159 0.99963 NaN 1 Median 0.74159 0.99963 NaN 1 0 Median NaN NaN NaN 0 0 Median 7854100 4775400 3078800 7854100 4775400 3078800 0 0 0 2608 1588 2674 9453 14277 14277 1 EHIEDFK TVKKILSDIGLEYCKEHIEDFKQFEPNDFY DIGLEYCKEHIEDFKQFEPNDFYLKNTTWE K E H F K Q 0 0 0 1 0 0 2 0 1 1 0 1 0 1 0 0 0 0 0 0 0 0 7 0 916.42905 Q6DHZ8;B2RBM8;Q9H2P0;E9PQK8 Q6DHZ8 33 39 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.0091543 127.84 1 2 1.0458 1.5207 14.176 3 Median 1.0283 1.2548 NaN 1 0 Median 1.0667 1.5863 5.9728 2 0 Median 37193000 18109000 19085000 20235000 10142000 10094000 16958000 7966700 8991400 2609 729 2675 9454;9455;9456 14278;14279;14280;14281;14282 14279 5 EHINLGCDMDFDIAGPSIR NTGKKNAKIKTGYKREHINLGCDMDFDIAG LGCDMDFDIAGPSIRGALVLGYEGWLAGYQ R E H I R G 1 1 1 3 1 0 1 2 1 3 1 0 1 1 1 1 0 0 0 0 0 0 19 0 2158.9776 A0A1L1UHR1;P21796;B3KTS5;C9JI87 A0A1L1UHR1 121 139 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 3 2.7294E-13 98.292 4 0.63809 0.88985 4.4176 4 Median 0.63809 0.88985 4.4176 4 0 Median NaN NaN NaN 0 0 Median 21922000 13299000 8623600 21922000 13299000 8623600 0 0 0 2610 524 2676;2677 9457;9458;9459;9460 14283;14284;14285;14286;14287;14288;14289;14290;14291 14290 182 9 EHLLLAR ILVVAANDGPMPQTREHLLLARQIGVEHVV DGPMPQTREHLLLARQIGVEHVVVYVNKAD R E H A R Q 1 1 0 0 0 0 1 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 7 0 850.50249 P49411 P49411 163 169 TUFM Elongation factor Tu, mitochondrial yes yes 2 0.007428 121.68 3 2 1.3824 1.9472 177.77 2 Median 0.41459 0.55397 NaN 1 0 Median 4.6098 6.8443 NaN 1 0 Median 101080000 67465000 33618000 71783000 64948000 6835300 29300000 2517400 26783000 2611 1350 2678 9461;9462;9463;9464;9465 14292;14293;14294;14295;14296 14292 5 EHLLQGLLPDVQVPTSVK LAEKIKVNWTPEINKEHLLQGLLPDVQVPT LQGLLPDVQVPTSVKDMRYCQVSFQDDHVS K E H V K D 0 0 0 1 0 2 1 1 1 0 4 1 0 0 2 1 1 0 0 3 0 0 18 0 1972.0993 A6NHR9;J3KTL8 A6NHR9 1102 1119 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3 1.9927E-39 143.43 4 0.81289 1.0205 6.2378 4 Median 0.81289 1.0205 6.2378 4 0 Median NaN NaN NaN 0 0 Median 68822000 39948000 28874000 68822000 39948000 28874000 0 0 0 2612 568 2679 9466;9467;9468;9469 14297;14298;14299;14300;14301;14302;14303;14304 14303 8 EHPDPGSKDPEEDYPK IVKTMSKERDVFLVKEHPDPGSKDPEEDYP HPDPGSKDPEEDYPKFGLLDQDLSNIGPAY K E H P K F 0 0 0 3 0 0 3 1 1 0 0 2 0 0 4 1 0 0 1 0 0 0 16 1 1838.7959 A8K6T5;Q9UBL3;F5H8F7;B4DPT1 A8K6T5 238 253 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 3 2.1494E-09 88.561 3 0.74944 0.93404 6.0422 3 Median 0.74944 0.93404 6.0422 3 0 Median NaN NaN NaN 0 0 Median 41810000 24604000 17207000 41810000 24604000 17207000 0 0 0 2613 627 2680 9470;9471;9472 14305;14306;14307;14308;14309;14310;14311 14310 7 EHPEALSCLLLQLR PLETIIPILQHLKYKEHPEALSCLLLQLRR KEHPEALSCLLLQLRREKPSEEMVKMVLSR K E H L R R 1 1 0 0 1 1 2 0 1 0 5 0 0 0 1 1 0 0 0 0 0 0 14 0 1677.8872 Q68E01 Q68E01 836 849 INTS3 Integrator complex subunit 3 yes yes 3 2.4492E-05 70.412 3 0.35543 0.48571 5.4639 2 Median 0.35543 0.48571 5.4639 2 0 Median NaN NaN NaN 0 0 Median 9437900 7337800 2100100 9437900 7337800 2100100 0 0 0 2614 1584 2681 9473;9474;9475 14312;14313;14314;14315 14314 4 EHPNYVDCYLR CEFHEAEKLYKNILREHPNYVDCYLRLGAM NILREHPNYVDCYLRLGAMARDKGNFYEAS R E H L R L 0 1 1 1 1 0 1 0 1 0 1 0 0 0 1 0 0 0 2 1 0 0 11 0 1464.6456 A8K6X9;Q6PD62 A8K6X9 526 536 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2 0.0026701 76.221 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11008000 11008000 0 11008000 11008000 0 0 0 0 2615 629 2682 9476 14316 14316 1 EHQDGTAFSCTPDGR PSTSFCHLCPNSFCKEHQDGTAFSCTPDGR EHQDGTAFSCTPDGRSYCCEHDLGAASVRS K E H G R S 1 1 0 2 1 1 1 2 1 0 0 0 0 1 1 1 2 0 0 0 0 0 15 0 1676.6849 O96028 O96028 1306 1320 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 2;3 1.6261E-27 170.66 9 0.89557 1.2033 19.227 6 Median 0.89557 1.2033 19.227 6 0 Median NaN NaN NaN 0 0 Median 85870000 44398000 41471000 85870000 44398000 41471000 0 0 0 2616 1228 2683 9477;9478;9479;9480;9481;9482;9483;9484;9485 14317;14318;14319;14320;14321;14322;14323;14324;14325;14326;14327;14328;14329;14330 14323 14 EHQEFLTK NRKNELEQLKEAFAKEHQEFLTKLAFAEER LKEAFAKEHQEFLTKLAFAEERNQNLMLEL K E H T K L 0 0 0 0 0 1 2 0 1 0 1 1 0 1 0 0 1 0 0 0 0 0 8 0 1030.5084 P49454 P49454 1081 1088 CENPF Centromere protein F yes yes 2 0.0057272 88.181 1 1.2655 1.7437 NaN 1 Median NaN NaN NaN 0 0 Median 1.2655 1.7437 NaN 1 0 Median 4094500 2003500 2091000 0 0 0 4094500 2003500 2091000 2617 1351 2684 9486 14331 14331 1 EHQHEEIQNVR LQGGMAFLDKRLQVKEHQHEEIQNVRNHIH LQVKEHQHEEIQNVRNHIHSCFSDVTCFLL K E H V R N 0 1 1 0 0 2 3 0 2 1 0 0 0 0 0 0 0 0 0 1 0 0 11 0 1417.6698 F5H6I7;B4DXC4;Q6DD88 F5H6I7 222 232 ATL3 Atlastin-3 yes no 3 0.00036802 69.721 1 0.47547 0.65451 NaN 1 Median 0.47547 0.65451 NaN 1 0 Median NaN NaN NaN 0 0 Median 4751600 3259900 1491700 4751600 3259900 1491700 0 0 0 2618 868 2685 9487 14332 14332 1 EHSAFQAPAVK FMMWKFINFQLRRWREHSAFQAPAVKKKPT RRWREHSAFQAPAVKKKPTVTKGRSSKKGT R E H V K K 3 0 0 0 0 1 1 0 1 0 0 1 0 1 1 1 0 0 0 1 0 0 11 0 1183.5986 G3XAN4;Q6FHL3;A8K032;Q15629;Q6FHU7 G3XAN4 239 249 TRAM1 Translocating chain-associated membrane protein;Translocating chain-associated membrane protein 1 yes no 2 0.0021864 105.1 2 0.67682 0.8324 20.571 2 Median 0.67682 0.8324 20.571 2 0 Median NaN NaN NaN 0 0 Median 32010000 13806000 18204000 32010000 13806000 18204000 0 0 0 2619 575 2686 9488;9489 14333;14334 14333 1 EHSLQVSPSLEK PPMQLGFPSLHSFIKEHSLQVSPSLEKGAK FIKEHSLQVSPSLEKGAKADTGLDDDIENE K E H E K G 0 0 0 0 0 1 2 0 1 0 2 1 0 0 1 3 0 0 0 1 0 0 12 0 1352.6936 O95235 O95235 526 537 KIF20A Kinesin-like protein KIF20A yes yes 2 6.0951E-14 133.91 4 2 0.67263 0.8521 19.584 3 Median 0.67263 0.8521 19.584 3 0 Median NaN NaN NaN 0 0 Median 33048000 24489000 8559200 31051000 22492000 8559200 1996500 1996500 0 2620 1215 2687 9490;9491;9492;9493;9494;9495 14335;14336;14337;14338;14339;14340 14340 6 EHTALLK KAIFAGYKRGLRNQREHTALLKIEGVYARD KRGLRNQREHTALLKIEGVYARDETEFYLG R E H L K I 1 0 0 0 0 0 1 0 1 0 2 1 0 0 0 0 1 0 0 0 0 0 7 0 810.45995 P18077;F8WBS5;F8WB72;C9K025 P18077 23 29 RPL35A 60S ribosomal protein L35a yes no 2 9.9238E-05 149.4 3 1 0.81889 1.0627 8.4484 4 Median 0.82103 1.0795 3.7602 3 0 Median 0.57568 0.92603 NaN 1 0 Median 495720000 279160000 216570000 461500000 257240000 204260000 34224000 21918000 12306000 2621 1280 2688 9496;9497;9498;9499 14341;14342;14343;14344;14345;14346 14344 6 EHTAYYIK EVESMGAHLNAYSTREHTAYYIKALSKDLP LNAYSTREHTAYYIKALSKDLPKAVELLGD R E H I K A 1 0 0 0 0 0 1 0 1 1 0 1 0 0 0 0 1 0 2 0 0 0 8 0 1023.5025 P31930;B4DUL5;B4DZB9 P31930 127 134 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes no 2 0.0058595 87.323 1 0.52395 0.69778 NaN 1 Median NaN NaN NaN 0 0 Median 0.52395 0.69778 NaN 1 0 Median 3061500 2174300 887210 0 0 0 3061500 2174300 887210 2622 1310 2689 9500 14347 14347 1 EHVDVIAK SHRVLQRALECLPSKEHVDVIAKFAQLEFQ LECLPSKEHVDVIAKFAQLEFQLGDAERAK K E H A K F 1 0 0 1 0 0 1 0 1 1 0 1 0 0 0 0 0 0 0 2 0 0 8 0 909.49198 Q14690 Q14690 1759 1766 PDCD11 Protein RRP5 homolog yes yes 2 3.3131E-06 147.52 3 0.99568 1.226 12.285 3 Plateau 0.99568 1.226 12.285 3 0 Plateau NaN NaN NaN 0 0 Median 82730000 42029000 40701000 82730000 42029000 40701000 0 0 0 2623 1494 2690 9501;9502;9503 14348;14349;14350;14351 14351 4 EHVEEISELFYDAK ANLLAKINGKDSIEKEHVEEISELFYDAKS KEHVEEISELFYDAKSSAKILADQQDKYMK K E H A K S 1 0 0 1 0 0 4 0 1 1 1 1 0 1 0 1 0 0 1 1 0 0 14 0 1707.7992 B5BUB1;Q9Y265;H7C4G5 B5BUB1 428 441 RUVBL1 RuvB-like 1 yes no 2;3 2.9227E-87 267.07 8 2 0.60069 0.75298 31.463 10 Median 0.57883 0.72809 6.9321 8 0 Median 1.0166 1.5355 1.7285 2 0 Median 132620000 79324000 53293000 107910000 67244000 40664000 24710000 12080000 12629000 2624 896 2691 9504;9505;9506;9507;9508;9509;9510;9511;9512;9513 14352;14353;14354;14355;14356;14357;14358;14359;14360;14361;14362;14363;14364 14355 13 EHVIEALR IGQVIMSIRTKLQNKEHVIEALRRAKFKFP RTKLQNKEHVIEALRRAKFKFPGRQKIHIS K E H L R R 1 1 0 0 0 0 2 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 965.52943 F8W7C6;A0A087WV22;H7C123;X5D7P1;H7C2C5;P27635;X1WI28;X5D2T3 P27635 146 153 RPL10 60S ribosomal protein L10 no no 2 1.2999E-11 172.91 4 2 0.75338 1.0466 5.8847 5 Median 0.81986 1.1249 4.9972 3 0 Median 0.63006 1.0159 0.49477 2 0 Median 412510000 222350000 190160000 309570000 158470000 151100000 102940000 63882000 39059000 2625 1301;1071 2692 9514;9515;9516;9517;9518;9519 14365;14366;14367;14368;14369;14370;14371;14372;14373;14374;14375;14376 14370 12 EHVIEALRR IGQVIMSIRTKLQNKEHVIEALRRAKFKFP TKLQNKEHVIEALRRAKFKFPGRQKIHISK K E H R R A 1 2 0 0 0 0 2 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 9 1 1121.6305 F8W7C6;A0A087WV22;H7C123;X5D7P1;H7C2C5;P27635;X1WI28;X5D2T3 P27635 146 154 RPL10 60S ribosomal protein L10 no no 2;3 1.873E-21 175.91 8 4 0.73026 1.0071 17.012 10 Median 0.7659 1.0402 3.8435 6 0 Median 0.51094 0.7514 4.4725 4 0 Median 1741400000 977450000 763990000 1673100000 932970000 740150000 68322000 44480000 23842000 2626 1301;1071 2693 9520;9521;9522;9523;9524;9525;9526;9527;9528;9529;9530;9531 14377;14378;14379;14380;14381;14382;14383;14384;14385;14386;14387;14388;14389;14390;14391;14392;14393;14394;14395;14396 14387 20 EHYLEDILAK GCPVIKVPGFMYPVKEHYLEDILAKLGKHQ MYPVKEHYLEDILAKLGKHQYLHRHRHHES K E H A K L 1 0 0 1 0 0 2 0 1 1 2 1 0 0 0 0 0 0 1 0 0 0 10 0 1229.6292 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 592 601 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.0047287 97.635 1 0.69932 0.8771 NaN 1 Median 0.69932 0.8771 NaN 1 0 Median NaN NaN NaN 0 0 Median 3792800 2089100 1703700 3792800 2089100 1703700 0 0 0 2627 93 2694 9532 14397 14397 1 EHYQVLE QQLLQAVNQQLTKEKEHYQVLE________ NQQLTKEKEHYQVLE_______________ K E H L E - 0 0 0 0 0 1 2 0 1 0 1 0 0 0 0 0 0 0 1 1 0 0 7 0 916.42905 A0A024R663;Q86UP2;G3V4Y7;B3KP76;B3KWP6;B7Z6P3 A0A024R663 1351 1357 KTN1 Kinectin yes no 2 0.036455 56.091 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3243700 0 0 0 0 0 3243700 0 0 2628 155 2695 9533 14398 14398 1 EIAEAYLGK FYPEEVSSMVLTKMKEIAEAYLGKTVTNAV VLTKMKEIAEAYLGKTVTNAVVTVPAYFND K E I G K T 2 0 0 0 0 0 2 1 0 1 1 1 0 0 0 0 0 0 1 0 0 0 9 0 992.51786 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;Q53HF2;E9PN89;B4DTX2;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PI65;A4D111 V9HW22 129 137 HEL-S-72p;HSPA8;LOC401308 Heat shock cognate 71 kDa protein yes no 2 0.00022516 77.923 2 2 1.4522 2.1959 63.248 3 Median 0.5985 0.74008 NaN 1 0 Median 1.4601 2.2131 1.1036 2 0 Median 73788000 37147000 36641000 38802000 24878000 13924000 34986000 12269000 22717000 2629 1253 2696 9534;9535;9536;9537 14399;14400;14401;14402;14403;14404 14399 6 EIAENALGK QGRSTGEAFVQFASKEIAENALGKHKERIG VQFASKEIAENALGKHKERIGHRYIEIFRS K E I G K H 2 0 1 0 0 0 2 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 9 0 943.49746 Q53F48;A0A024QZK8;P31942 Q53F48 68 76 HNRPH3;HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 2 0.0025868 81.89 2 1 0.32939 0.40852 10.288 2 Median 0.32939 0.40852 10.288 2 0 Median NaN NaN NaN 0 0 Median 42741000 30367000 12374000 41007000 30367000 10640000 1733900 0 1733900 2630 15 2697 9538;9539;9540 14405;14406;14407;14408 14406 4 EIAENITK ISQMLKTKEQKVNPREIAENITKHLPDNEC EQKVNPREIAENITKHLPDNECIEKVEIAG R E I T K H 1 0 1 0 0 0 2 0 0 2 0 1 0 0 0 0 1 0 0 0 0 0 8 0 916.48656 P54136 P54136 136 143 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 0.044799 47.657 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2631 1373 2698 9541 14409 14409 1 EIAQDFK TELLIRKLPFQRLVREIAQDFKTDLRFQSA LPFQRLVREIAQDFKTDLRFQSAAIGALQE R E I F K T 1 0 0 1 0 1 1 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 7 0 849.42323 B2R4P9;P84243;B4E380;K7EK07;Q16695;B2R6Y1;A8K4Y7;K7EMV3;B4DEB1;K7ES00;Q6TXQ4;P68431;Q71DI3 B2R4P9 74 80 H3F3A;H3F3B;HIST3H3;HIST1H3A;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.1;Histone H3.2 no no 1;2 8.7335E-05 159.2 32 5 0.74861 0.93576 8.1474 15 Median 0.7511 0.93576 7.3213 13 0 Median 0.68313 1.0094 15.933 2 0 Median 21019000000 20012000000 1007000000 15379000000 14435000000 943650000 5640300000 5576900000 63337000 2632 685;1424;1605 2699 9542;9543;9544;9545;9546;9547;9548;9549;9550;9551;9552;9553;9554;9555;9556;9557;9558;9559;9560;9561;9562;9563;9564;9565;9566;9567;9568;9569;9570;9571;9572;9573;9574;9575;9576;9577;9578 14410;14411;14412;14413;14414;14415;14416;14417;14418;14419;14420;14421;14422;14423;14424;14425;14426;14427;14428;14429;14430;14431;14432;14433;14434;14435;14436;14437;14438;14439;14440;14441;14442;14443;14444;14445;14446;14447;14448;14449;14450;14451;14452;14453;14454;14455;14456;14457;14458;14459;14460;14461;14462;14463;14464;14465;14466;14467;14468;14469;14470;14471;14472;14473;14474;14475 14423 66 EIAQDFKTDLR TELLIRKLPFQRLVREIAQDFKTDLRFQSA RLVREIAQDFKTDLRFQSAAIGALQEASEA R E I L R F 1 1 0 2 0 1 1 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 11 1 1334.683 B2R4P9;P84243;B4E380;K7EK07;Q16695;B2R6Y1;A8K4Y7;K7EMV3;B4DEB1;K7ES00;Q6TXQ4;P68431;Q71DI3 B2R4P9 74 84 H3F3A;H3F3B;HIST3H3;HIST1H3A;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.1;Histone H3.2 no no 2;3 1.5625E-17 161.19 8 4 0.83661 1.1553 15.881 12 Median 0.83661 1.1025 6.1432 8 0 Median 0.85061 1.488 4.9095 4 0 Median 1785100000 928200000 856890000 1180000000 608160000 571850000 605080000 320040000 285040000 2633 685;1424;1605 2700 9579;9580;9581;9582;9583;9584;9585;9586;9587;9588;9589;9590 14476;14477;14478;14479;14480;14481;14482;14483;14484;14485;14486;14487;14488;14489;14490;14491;14492;14493;14494;14495;14496;14497 14492 22 EIAQEFKTDLR TELLIRKLPFQRLVREIAQEFKTDLRFQSS RLVREIAQEFKTDLRFQSSAVMALQEAREA R E I L R F 1 1 0 1 0 1 2 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 11 1 1348.6987 Q5TEC6 Q5TEC6 74 84 HIST2H3PS2 Histone H3 yes yes 2;3 3.6306E-36 196.37 14 7 0.61788 0.84178 20.145 16 Median 0.6192 0.81952 24.345 11 0 Median 0.50995 0.8588 5.8854 5 0 Median 15894000000 9772600000 6121500000 12257000000 6796500000 5460400000 3637100000 2976000000 661070000 2634 1577 2701 9591;9592;9593;9594;9595;9596;9597;9598;9599;9600;9601;9602;9603;9604;9605;9606;9607;9608;9609;9610;9611 14498;14499;14500;14501;14502;14503;14504;14505;14506;14507;14508;14509;14510;14511;14512;14513;14514;14515;14516;14517;14518;14519;14520;14521;14522;14523;14524;14525;14526;14527;14528;14529;14530;14531;14532;14533;14534;14535;14536;14537;14538 14511 41 EICAVLAAVTEVIR SKVQRFWESNSAAHKEICAVLAAVTEVIRS KEICAVLAAVTEVIRSQGGKETETEYFAAL K E I I R S 3 1 0 0 1 0 2 0 0 2 1 0 0 0 0 0 1 0 0 3 0 0 14 0 1542.844 B3KMR5;Q5JTH9;A0A087X1U8 B3KMR5 123 136 RRP12 RRP12-like protein yes no 2 0.0041924 107.97 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2232000 2232000 0 2232000 2232000 0 0 0 0 2635 756 2702 9612 14539;14540 14540 2 EICCYSISCK KQLIEKMNLSAIQDREICCYSISCKEKDNI AIQDREICCYSISCKEKDNIDITLQWLIQH R E I C K E 0 0 0 0 3 0 1 0 0 2 0 1 0 0 0 2 0 0 1 0 0 0 10 0 1318.5356 B4DQT8;A0A024R977;A0A024R2D4;B4E1J8;Q9NVJ2;Q96BM9 B4DQT8 147 156 ARL8A;ARL8B ADP-ribosylation factor-like protein 8B;ADP-ribosylation factor-like protein 8A yes no 2 0.047092 44.318 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2875400 2875400 0 2875400 2875400 0 0 0 0 2636 82 2703 9613 14541 14541 1 EICELTGIDQSVLER NGLDESKIKDKNELKEICELTGIDQSVLER EICELTGIDQSVLERAFSFRTVEAKQEKVS K E I E R A 0 1 0 1 1 1 3 1 0 2 2 0 0 0 0 1 1 0 0 1 0 0 15 0 1760.8615 E9PDF6;B0I1S9;O43795 E9PDF6 308 322 MYO1B Unconventional myosin-Ib yes no 2 3.9198E-13 146.5 4 1.398 1.9033 NaN 1 Median 1.398 1.9033 NaN 1 0 Median NaN NaN NaN 0 0 Median 22138000 12421000 9717400 22138000 12421000 9717400 0 0 0 2637 665 2704 9614;9615;9616;9617 14542;14543;14544;14545;14546;14547 14546 6 EIDDSVLGQTGPYR AAFRALSQGVESVKKEIDDSVLGQTGPYRR KEIDDSVLGQTGPYRRPQRLRKRTEFAGDK K E I Y R R 0 1 0 2 0 1 1 2 0 1 1 0 0 0 1 1 1 0 1 1 0 0 14 0 1548.742 M0QXU7;Q9UPE4;Q53G69;O43615 M0QXU7 157 170 TIMM44;hTIM44 Mitochondrial import inner membrane translocase subunit TIM44 yes no 2 0.038375 47.559 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1825000 1825000 0 1825000 1825000 0 0 0 0 2638 1159 2705 9618 14548 14548 1 EIDGGLETLR ASQVTLEGDKLKVEREIDGGLETLRLKLPA LKVEREIDGGLETLRLKLPAVVTADLRLNE R E I L R L 0 1 0 1 0 0 2 2 0 1 2 0 0 0 0 0 1 0 0 0 0 0 10 0 1101.5666 P38117;M0QY67 P38117 165 174 ETFB Electron transfer flavoprotein subunit beta yes no 2 0.047608 70.816 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2995100 2995100 0 2995100 2995100 0 0 0 0 2639 1327 2706 9619 14549 14549 1 EIDLLLGQTDDTR AVLKNEKLRDKERRKEIDLLLGQTDDTRYH RKEIDLLLGQTDDTRYHVLVNLGKKITDYG K E I T R Y 0 1 0 3 0 1 1 1 0 1 3 0 0 0 0 0 2 0 0 0 0 0 13 0 1487.7468 O75643 O75643 156 168 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 5.9242E-22 160.91 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2640 1206 2707 9620;9621;9622;9623 14550;14551;14552;14553 14552 4 EIDPENFK DFEKRLGTVLPVIEKEIDPENFKDIMEETE VLPVIEKEIDPENFKDIMEETEEKAADRLL K E I F K D 0 0 1 1 0 0 2 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 8 0 990.46583 O75691;B4DN27 O75691 2413 2420 UTP20 Small subunit processome component 20 homolog yes no 2 0.042337 45.081 1 0.9069 1.3599 NaN 1 Median NaN NaN NaN 0 0 Median 0.9069 1.3599 NaN 1 0 Median 7748600 4207500 3541200 0 0 0 7748600 4207500 3541200 2641 1207 2708 9624 14554 14554 1 EIDVISIPSK CVRKRPLNKQELAKKEIDVISIPSKCLLLV ELAKKEIDVISIPSKCLLLVHEPKLKVDLT K E I S K C 0 0 0 1 0 0 1 0 0 3 0 1 0 0 1 2 0 0 0 1 0 0 10 0 1099.6125 A8K3S3;A0A140VKF1;Q99661;B7Z7M6;B7Z6Q6;Q8N5N1;Q5JR91;Q5JR89 A8K3S3 277 286 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 2 0.00029593 111.46 4 2 0.81507 1.1252 17.156 4 Median 0.76592 0.97276 2.5751 2 0 Median 0.87569 1.3058 3.0354 2 0 Median 75326000 45383000 29943000 60409000 37108000 23301000 14917000 8274900 6642300 2642 514 2709 9625;9626;9627;9628;9629;9630 14555;14556;14557;14558;14559;14560;14561;14562 14559 8 EIEDFDSLEALRLEGNTVGVEAAR DSQTQLFVSSKDVIKEIEDFDSLEALRLEG ALRLEGNTVGVEAARVIAKALEKKSELKRC K E I A R V 3 2 1 2 0 0 5 2 0 1 3 0 0 1 0 1 1 0 0 2 0 0 24 1 2632.298 B4DY16;A0A024R1U0;P46060;B0QYT5;B0QYT4 B4DY16 34 57 RANGAP1 Ran GTPase-activating protein 1 yes no 3 1.0239E-15 85.35 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5067600 5067600 0 5067600 5067600 0 0 0 0 2643 70 2710 9631 14563 14563 1 EIEEESETTVEADLTDK DISNTLIMLADKHAKEIEEESETTVEADLT EEESETTVEADLTDKQKHQLKHRELFLSRQ K E I D K Q 1 0 0 2 0 0 6 0 0 1 1 1 0 0 0 1 3 0 0 1 0 0 17 0 1936.8637 E7EQY4;E7EV10;Q9BTC8;E9PCS8;D6W5A2;Q53RX8 E7EQY4 65 81 MTA3;tmp_locus_6 Metastasis-associated protein MTA3 yes no 2 1.0545E-98 267.93 4 1 0.6447 0.80384 13.197 4 Median 0.6447 0.80384 13.197 4 0 Median NaN NaN NaN 0 0 Median 28674000 19240000 9433800 23172000 13738000 9433800 5502500 5502500 0 2644 1012 2711 9632;9633;9634;9635;9636 14564;14565;14566;14567;14568;14569;14570;14571;14572;14573;14574 14568 11 EIEELQSQAQALSQEGK KKQQMLENQMEVRKKEIEELQSQAQALSQE EELQSQAQALSQEGKSTDEVDSKRLTVQTK K E I G K S 2 0 0 0 0 4 4 1 0 1 2 1 0 0 0 2 0 0 0 0 0 0 17 0 1886.9222 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24 B2ZZ89 1435 1451 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 3.3176E-268 369.35 4 1 0.85275 1.0738 5.7239 4 Median 0.85275 1.0738 5.7239 4 0 Median NaN NaN NaN 0 0 Median 50117000 25481000 24636000 47306000 25481000 21825000 2811100 0 2811100 2645 346 2712 9637;9638;9639;9640;9641 14575;14576;14577;14578;14579;14580;14581;14582;14583;14584 14577 10 EIEESKEPGVEDTEWSNTQTEEAIQTR NGGLKAKTITKKRKKEIEESKEPGVEDTEW TEWSNTQTEEAIQTRSRTRKRVQK______ K E I T R S 1 1 1 1 0 2 8 1 0 2 0 1 0 0 1 2 4 1 0 1 0 0 27 1 3134.4164 A8K245;Q99986;H0YJF7 A8K245 361 387 VRK1 Serine/threonine-protein kinase VRK1 yes no 3 0.00082364 29.61 1 0.44766 0.72252 NaN 1 Median NaN NaN NaN 0 0 Median 0.44766 0.72252 NaN 1 0 Median 16903000 11029000 5874000 0 0 0 16903000 11029000 5874000 2646 582 2713 9642 14585;14586 14586 2 EIEGEEIEIVLAKPPDK DRGAAVKAMDEMNGKEIEGEEIEIVLAKPP EGEEIEIVLAKPPDKKRKERQAARQASRST K E I D K K 1 0 0 1 0 0 5 1 0 3 1 2 0 0 2 0 0 0 0 1 0 0 17 1 1908.0092 Q0VGD6;Q6MZS5;B2R7W4;O43390;B4DT28;B4DMB1;B4DMD1;Q7Z334 Q0VGD6 372 388 HNRPR;DKFZp686A13234;HNRNPR;DKFZp686O0665 Heterogeneous nuclear ribonucleoprotein R yes no 3 0.045815 18.58 1 0.77608 0.95093 NaN 1 Median 0.77608 0.95093 NaN 1 0 Median NaN NaN NaN 0 0 Median 7010600 3806300 3204300 7010600 3806300 3204300 0 0 0 2647 711 2714 9643 14587 14587 1 EIEIDIEPTDK ______________________________ LTGKEIEIDIEPTDKVERIKERVEEKEGIP K E I D K V 0 0 0 2 0 0 3 0 0 3 0 1 0 0 1 0 1 0 0 0 0 0 11 0 1300.6398 Q15843;F8VSA6;E9PS38;S4R3E9;E9PL57 Q15843 12 22 NEDD8;NEDD8-MDP1 NEDD8 yes no 2 0.0016062 103.26 3 2 0.59488 0.75187 20.563 5 Median 0.59488 0.75187 10.091 3 0 Plateau 0.65831 0.98583 1.1752 2 0 Median 42802000 26374000 16427000 24400000 15222000 9178600 18401000 11153000 7248600 2648 1517 2715 9644;9645;9646;9647;9648 14588;14589;14590;14591;14592 14591 5 EIEIDIEPTDKVER ______________________________ KEIEIDIEPTDKVERIKERVEEKEGIPPQQ K E I E R I 0 1 0 2 0 0 4 0 0 3 0 1 0 0 1 0 1 0 0 1 0 0 14 1 1684.8519 Q15843;F8VSA6;E9PS38;S4R3E9;E9PL57 Q15843 12 25 NEDD8;NEDD8-MDP1 NEDD8 yes no 2 1.2793E-14 149.94 3 0.62178 0.82036 10.368 2 Median 0.62178 0.82036 10.368 2 0 Median NaN NaN NaN 0 0 Median 15602000 10124000 5477600 15602000 10124000 5477600 0 0 0 2649 1517 2716 9649;9650;9651 14593;14594;14595;14596 14596 4 EIEIGVPNAQDRLDILQK HALDAALRRPGRFDKEIEIGVPNAQDRLDI IGVPNAQDRLDILQKLLRRVPHLLTEAELL K E I Q K L 1 1 1 2 0 2 2 1 0 3 2 1 0 0 1 0 0 0 0 1 0 0 18 1 2050.1059 Q8NB90 Q8NB90 518 535 SPATA5 Spermatogenesis-associated protein 5 yes yes 3 0.00092684 71.354 2 0.83842 1.1011 25.439 2 Median 0.83842 1.1011 25.439 2 0 Median NaN NaN NaN 0 0 Median 10146000 6234500 3911000 10146000 6234500 3911000 0 0 0 2650 1648 2717 9652;9653 14597;14598;14599;14600 14597 4 EIEIQAHLHHPNILR KSQIEKEGVEHQLRREIEIQAHLHHPNILR EIEIQAHLHHPNILRLYNYFYDRRRIYLIL R E I L R L 1 1 1 0 0 1 2 0 3 3 2 0 0 0 1 0 0 0 0 0 0 0 15 0 1818.9853 B2RC06;J3KT86;Q96GD4;J3KTD6;J3QLN8;J3QR41 B2RC06 125 139 AURKB Aurora kinase B no no 4 0.00022616 53.001 1 0.83098 1.1562 NaN 1 Median 0.83098 1.1562 NaN 1 0 Median NaN NaN NaN 0 0 Median 64668000 35643000 29026000 64668000 35643000 29026000 0 0 0 2651 731;1686 2718 9654 14601;14602 14601 2 EIELIGSGGFGQVFK ETKYTVDKRFGMDFKEIELIGSGGFGQVFK EIELIGSGGFGQVFKAKHRIDGKTYVIKRV K E I F K A 0 0 0 0 0 1 2 4 0 2 1 1 0 2 0 1 0 0 0 1 0 0 15 0 1579.8246 B7ZKK7;P19525;Q8IW76;Q05CP4;Q6PK38 B7ZKK7 269 283 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 2 1.6319E-05 73.951 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2460100 0 2460100 0 0 0 2460100 0 2460100 2652 923 2719 9655 14603 14603 1 EIELPSGQLMGLFNR LGIGLQHKSVDQLEKEIELPSGQLMGLFNR EIELPSGQLMGLFNRIIRKVVKLFNEVQEK K E I N R I 0 1 1 0 0 1 2 2 0 1 3 0 1 1 1 1 0 0 0 0 0 0 15 0 1702.8712 Q9H0A0;A0A087WV29 Q9H0A0 883 897 NAT10 N-acetyltransferase 10 yes no 2 6.6432E-15 160.18 6 1 0.86514 1.2005 23.369 5 Median 0.86514 1.2005 23.369 5 0 Median NaN NaN NaN 0 0 Median 64929000 18685000 46244000 36374000 18685000 17689000 28556000 0 28556000 2653 1730 2720;2721 9656;9657;9658;9659;9660;9661;9662 14604;14605;14606;14607;14608;14609;14610;14611;14612;14613 14608 787 10 EIEQLQEK KETPYSEEDFQHLQKEIEQLQEKYKTELCT DFQHLQKEIEQLQEKYKTELCTKQALLAEL K E I E K Y 0 0 0 0 0 2 3 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 8 0 1015.5186 A8K1M4;Q9H081 A8K1M4 120 127 MIS12 Protein MIS12 homolog yes no 2 0.026157 55.504 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2654 579 2722 9663 14614 14614 1 EIEQVYR SQLTTRSKAIASKTKEIEQVYRQDCETFGM KAIASKTKEIEQVYRQDCETFGMVVKMLIE K E I Y R Q 0 1 0 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 7 0 935.47125 F8W6A0;B7Z8M9;B7Z695;F8WF16;B7Z615;B7Z8L1;Q8NEY8;F8W0Q9 F8W6A0 180 186 PPHLN1 Periphilin-1 no no 2 0.043957 53.163 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2655 913;1066 2723 9664 14615 14615 1 EIERPFETYK QKATLLQQRREGEMKEIERPFETYKENIEL EGEMKEIERPFETYKENIELKENDEKMKAM K E I Y K E 0 1 0 0 0 0 3 0 0 1 0 1 0 1 1 0 1 0 1 0 0 0 10 1 1310.6507 P46013 P46013 924 933 MKI67 Antigen KI-67 yes yes 2;3 2.159E-27 179.1 6 3 0.87378 1.1456 21.346 9 Median 0.83744 1.1029 7.8491 6 0 Median 0.921 1.642 5.5599 3 0 Median 922000000 490690000 431310000 705990000 376610000 329380000 216020000 114080000 101940000 2656 1342 2724 9665;9666;9667;9668;9669;9670;9671;9672;9673 14616;14617;14618;14619;14620;14621;14622;14623;14624;14625;14626;14627;14628;14629 14623 14 EIESAVTTEANK E I N K 2 0 1 0 0 0 3 0 0 1 0 1 0 0 0 1 2 0 0 1 0 0 12 0 1290.6303 REV__A8K273 yes no 2 0.0021267 56.563 1 0.84558 1.0552 NaN 1 Median 0.84558 1.0552 NaN 1 0 Median NaN NaN NaN 0 0 Median 41943000 21253000 20690000 41943000 21253000 20690000 0 0 0 + 2657 1846 2725 9674 14630;14631 14631 2 EIETYHNLLEGGQEDFESSGAGK QEYSLLLSIKMRLEKEIETYHNLLEGGQED LEGGQEDFESSGAGKIGLGGRGGSGGSYGR K E I G K I 1 0 1 1 0 1 5 4 1 1 2 1 0 1 0 2 1 0 1 0 0 0 23 0 2509.1245 CON__P35527;P35527;K7EQQ3 CON__P35527 450 472 KRT9 Keratin, type I cytoskeletal 9 yes no 3 1.9324E-28 148.66 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1294500000 1294500000 0 722100000 722100000 0 572360000 572360000 0 + 2658 963 2726 9675;9676;9677;9678;9679 14632;14633;14634;14635;14636;14637;14638;14639;14640;14641 14633 10 EIFDIAFPDEQAEALAVER FITEGLEVHFVEHYREIFDIAFPDEQAEAL IAFPDEQAEALAVER_______________ R E I E R - 4 1 0 2 0 1 4 0 0 2 1 0 0 2 1 0 0 0 0 1 0 0 19 0 2162.0532 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0 K7EJE8 811 829 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 2 3.5046E-17 97.203 3 0.53397 0.71509 NaN 1 Median 0.53397 0.71509 NaN 1 0 Median NaN NaN NaN 0 0 Median 9383700 7388600 1995100 9383700 7388600 1995100 0 0 0 2659 780 2727 9680;9681;9682 14642;14643;14644;14645 14644 4 EIFITFR GVEDGQTVRMPVGKREIFITFRVQKSPVFR VRMPVGKREIFITFRVQKSPVFRRDGADIH R E I F R V 0 1 0 0 0 0 1 0 0 2 0 0 0 2 0 0 1 0 0 0 0 0 7 0 924.5069 B3KM81;Q59E88;Q53G26;Q96EY1 B3KM81 326 332 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes no 2 0.013565 81.381 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5160500 5160500 0 5160500 5160500 0 0 0 0 2660 753 2728 9683 14646 14646 1 EIFLSQPILLELEAPLK QLTENEIRGLCLKSREIFLSQPILLELEAP FLSQPILLELEAPLKICGDIHGQYYDLLRL R E I L K I 1 0 0 0 0 1 3 0 0 2 5 1 0 1 2 1 0 0 0 0 0 0 17 0 1952.1234 A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;A0A087WYY5;F8WE71;P62136;A0A140VJS9;B3KXM2;E9PMD7;F5H1L6;F5H037;V9HW04;P62140;B4DJ75;B7ZB67;E7ETD8;C9J9S3;C9JP48;B4E163 V9HW04 44 60 PPP1CC;PPP1CB;PPP1CA;HEL-S-80p Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 2 2.6716E-14 151.16 2 0.97718 1.2594 10.956 2 Median 0.97718 1.2594 10.956 2 0 Median NaN NaN NaN 0 0 Median 77482000 41085000 36396000 77482000 41085000 36396000 0 0 0 2661 1396;1397;279 2729 9684;9685 14647;14648;14649 14649 3 EIFLTVPVGGGESLR IYNTSGNGSPLADSKEIFLTVPVGGGESLR EIFLTVPVGGGESLRLLASDLQRHSIAQLD K E I L R L 0 1 0 0 0 0 2 3 0 1 2 0 0 1 1 1 1 0 0 2 0 0 15 0 1572.8512 A8K7A2;Q53HL2 A8K7A2 226 240 CDCA8 Borealin yes no 2 1.363E-27 171.92 5 2 0.92386 1.2614 7.3882 6 Median 0.94511 1.302 4.482 4 0 Median 0.69594 1.1511 3.6605 2 0 Median 1007700000 527580000 480130000 519080000 246390000 272700000 488630000 281190000 207440000 2662 632 2730 9686;9687;9688;9689;9690;9691;9692 14650;14651;14652;14653;14654;14655;14656;14657;14658;14659 14651 10 EIFNFVLK CNFTKSMEEDPQTSREIFNFVLKAIRPQID EDPQTSREIFNFVLKAIRPQIDLKRYAVPS R E I L K A 0 0 1 0 0 0 1 0 0 1 1 1 0 2 0 0 0 0 0 1 0 0 8 0 1008.5644 P78527;B4DL41 P78527 247 254 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.0054971 97.071 4 2 0.50343 0.64252 29.489 5 Median 0.49147 0.61213 7.2842 3 0 Median 0.66741 1.0128 11.828 2 0 Median 96835000 58781000 38054000 62559000 39192000 23367000 34276000 19589000 14688000 2663 1427 2731 9693;9694;9695;9696;9697;9698 14660;14661;14662;14663;14664;14665;14666;14667;14668;14669;14670 14662 11 EIGDYIR THYTPLACGSNPLKREIGDYIRTGFINLDK CGSNPLKREIGDYIRTGFINLDKPSNPSSH R E I I R T 0 1 0 1 0 0 1 1 0 2 0 0 0 0 0 0 0 0 1 0 0 0 7 0 864.43413 O60832;C9IYT0;U5UA77;H7C0M1;U5U7S7;H7C2Q9 O60832 82 88 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 0.0063353 148.28 4 1 0.70803 1.0257 3.7458 3 Plateau 0.72776 0.98849 5.2295 2 0 Median 0.63021 0.9783 NaN 1 0 Median 166410000 111860000 54544000 136530000 93754000 42778000 29873000 18108000 11765000 2664 1193 2732 9699;9700;9701;9702;9703 14671;14672;14673;14674;14675;14676 14675 6 EIGLLADEIEIYGK ISRGQTPKAVDVLAKEIGLLADEIEIYGKS KEIGLLADEIEIYGKSKAKVRLSVLERLKD K E I G K S 1 0 0 1 0 0 3 2 0 3 2 1 0 0 0 0 0 0 1 0 0 0 14 0 1561.8239 A0A087WVM4;B7ZM99;Q6UB35;B2RD24 A0A087WVM4 315 328 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 2 6.1629E-05 121.29 1 0.29671 0.36575 NaN 1 Median 0.29671 0.36575 NaN 1 0 Median NaN NaN NaN 0 0 Median 1330500 998040 332410 1330500 998040 332410 0 0 0 2665 348 2733 9704 14677 14677 1 EIGLLSEEVELYGETK ISRSCKPKPIGKLAREIGLLSEEVELYGET IGLLSEEVELYGETKAKVLLSALERLKHRP R E I T K A 0 0 0 0 0 0 5 2 0 1 3 1 0 0 0 1 1 0 1 1 0 0 16 0 1807.9091 A0A024R652;F5H2F4;B7Z809;P11586 A0A024R652 337 352 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 2.0813E-06 112.44 1 0.40678 0.53946 NaN 1 Median 0.40678 0.53946 NaN 1 0 Median NaN NaN NaN 0 0 Median 2644300 1882200 762060 2644300 1882200 762060 0 0 0 2666 154 2734 9705 14678 14678 1 EIGQSVDEVEK AEAWLLGQEPYLSSREIGQSVDEVEKLIKR LSSREIGQSVDEVEKLIKRHEAFEKSAATW R E I E K L 0 0 0 1 0 1 3 1 0 1 0 1 0 0 0 1 0 0 0 2 0 0 11 0 1231.5932 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;B4DIF8 B2ZZ89 2044 2054 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 9.8994E-05 131.52 4 0.89236 1.1274 10.351 3 Median 0.89236 1.1274 10.351 3 0 Median NaN NaN NaN 0 0 Median 39693000 23934000 15759000 39693000 23934000 15759000 0 0 0 2667 346 2735 9706;9707;9708;9709 14679;14680;14681;14682;14683;14684;14685 14680 7 EIIDLVLDR DAANNYARGHYTIGKEIIDLVLDRIRKLAD HYTIGKEIIDLVLDRIRKLADRCTGLQGFL K E I D R I 0 1 0 2 0 0 1 0 0 2 2 0 0 0 0 0 0 0 0 1 0 0 9 0 1084.6128 B3KT06;P68363;B3KPS3;A8JZY9;F8VVB9;F8VRZ4;F8VS66;Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;Q8N532;Q71U36;B4DQK4;F8VQQ4 B3KT06 78 86 TUBA1B;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1C chain;Tubulin alpha-1A chain no no 2 1.4062E-05 133.58 4 2 0.3807 0.5184 127.8 6 Median 0.36907 0.50368 4.0166 4 0 Median 3.784 5.9665 6.4672 2 0 Median 239220000 140450000 98772000 174580000 125300000 49276000 64640000 15144000 49496000 2668 777;1607;1056 2736 9710;9711;9712;9713;9714;9715 14686;14687;14688;14689;14690;14691;14692;14693;14694;14695;14696 14692 11 EIIDPVLDR DAANNYARGHYTIGKEIIDPVLDRIRKLSD HYTIGKEIIDPVLDRIRKLSDQCTGLQGFL K E I D R I 0 1 0 2 0 0 1 0 0 2 1 0 0 0 1 0 0 0 0 1 0 0 9 0 1068.5815 P68366;C9JEV8;C9JQ00;C9JJQ8 P68366 113 121 TUBA4A Tubulin alpha-4A chain yes no 2 0.012021 72.879 3 0.42854 0.57134 15.642 3 Median 0.42854 0.57134 15.642 3 0 Median NaN NaN NaN 0 0 Median 54623000 35413000 19209000 54623000 35413000 19209000 0 0 0 2669 1422 2737 9716;9717;9718 14697;14698;14699 14698 3 EIIEVLQK LLYLLSPRDPAHTVREIIEVLQKGDGNAHS DPAHTVREIIEVLQKGDGNAHSKKDTEVRR R E I Q K G 0 0 0 0 0 1 2 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 8 0 970.5699 Q15397;B2RDG4 Q15397 457 464 KIAA0020 Pumilio domain-containing protein KIAA0020 yes no 2 0.0050416 97.602 2 0.67722 0.84713 16.865 2 Median 0.67722 0.84713 16.865 2 0 Median NaN NaN NaN 0 0 Median 31849000 18897000 12952000 31849000 18897000 12952000 0 0 0 2670 1511 2738 9719;9720 14700;14701 14701 1 EIILMDLVRPQDTYQFFVK GDPLQPTRVKDPETREIILMDLVRPQDTYQ MDLVRPQDTYQFFVKHGELKVYKTLDTPFF R E I V K H 0 1 0 2 0 2 1 0 0 2 2 1 1 2 1 0 1 0 1 2 0 0 19 1 2354.2344 Q03188 Q03188 834 852 CENPC Centromere protein C yes yes 3 0.0071905 51.591 1 0.69016 0.91202 NaN 1 Median 0.69016 0.91202 NaN 1 0 Median NaN NaN NaN 0 0 Median 1333200 853130 480100 1333200 853130 480100 0 0 0 2671 1439 2739 9721 14702 14702 647 1 EIINTYTEAVQTVDPFK HEWHKRVALHQGRPREIINTYTEAVQTVDP INTYTEAVQTVDPFKATGKPHTLWVAFAKF R E I F K A 1 0 1 1 0 1 2 0 0 2 0 1 0 1 1 0 3 0 1 2 0 0 17 0 1966.9888 Q68CN2;Q71SV8;Q9HCS7 Q68CN2 224 240 DKFZp762C1015;XAB2 Pre-mRNA-splicing factor SYF1 yes no 2 5.7466E-13 96.306 1 0.46648 0.59985 NaN 1 Median 0.46648 0.59985 NaN 1 0 Median NaN NaN NaN 0 0 Median 4526900 2848300 1678600 4526900 2848300 1678600 0 0 0 2672 1582 2740 9722 14703 14703 1 EIIPGNLEDPSEFETPALSTK YTVKSHSLFLTQKDKEIIPGNLEDPSEFET LEDPSEFETPALSTKDSGNLYDSEIQNVLG K E I T K D 1 0 1 1 0 0 4 1 0 2 2 1 0 1 3 2 2 0 0 0 0 0 21 0 2286.1267 Q562F6;B7Z7S9 Q562F6 752 772 SGOL2 Shugoshin-like 2 yes no 2 1.8187E-12 115.04 4 0.74756 0.95777 4.3091 4 Median 0.74756 0.95777 4.3091 4 0 Median NaN NaN NaN 0 0 Median 36624000 19511000 17112000 36624000 19511000 17112000 0 0 0 2673 1546 2741 9723;9724;9725;9726 14704;14705;14706;14707;14708;14709;14710;14711;14712;14713 14704 10 EIISHISQHGGK LVELKVILHSSSGNKEIISHISQHGGKWPY GNKEIISHISQHGGKWPYWFKKMENIQKLG K E I G K W 0 0 0 0 0 1 1 2 2 3 0 1 0 0 0 2 0 0 0 0 0 0 12 0 1304.6837 A6NHR9;J3KTL8;J3QSH1 A6NHR9 760 771 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.0055255 50.353 1 0.76555 0.97846 NaN 1 Median 0.76555 0.97846 NaN 1 0 Median NaN NaN NaN 0 0 Median 3055600 1828300 1227300 3055600 1828300 1227300 0 0 0 2674 568 2742 9727 14714 14714 1 EILETLIK GIFAYLNYHVPRTRREILETLIKGLQRLEY HVPRTRREILETLIKGLQRLEYRGYDSAGV R E I I K G 0 0 0 0 0 0 2 0 0 2 2 1 0 0 0 0 1 0 0 0 0 0 8 0 957.57465 Q06210 Q06210 18 25 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 0.026009 95.352 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2675 1445 2743 9728 14715 14715 1 EILFYR DFQFFPPRLFELLEKEILFYRKTIGYKVPR PRLFELLEKEILFYRKTIGYKVPRNPELPN K E I Y R K 0 1 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 1 0 0 0 6 0 839.45414 O60264;B7ZAX9;B4DZC0 O60264 788 793 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 0.035505 107.15 3 2 2.3066 3.2444 19.14 5 Median 2.3805 3.169 20.545 3 0 Median 2.2043 3.5614 4.7172 2 0 Median 199780000 64530000 135250000 89572000 31101000 58472000 110210000 33430000 76779000 2676 1189 2744 9729;9730;9731;9732;9733 14716;14717;14718;14719;14720;14721 14717 6 EILGTAQSVGCNVDGR MRHRSLARELSGTIKEILGTAQSVGCNVDG ILGTAQSVGCNVDGRHPHDIIDDINSGAVE K E I G R H 1 1 1 1 1 1 1 3 0 1 1 0 0 0 0 1 1 0 0 2 0 0 16 0 1674.7995 P30050;Q59FI9 P30050 131 146 RPL12 60S ribosomal protein L12 yes no 2 7.464E-72 242.4 4 3 0.74213 1.0176 13.62 6 Median 0.77399 1.0595 4.5465 4 0 Median 0.50501 0.82247 4.799 2 0 Median 561660000 328620000 233040000 413800000 229200000 184600000 147860000 99417000 48442000 2677 1307 2745 9734;9735;9736;9737;9738;9739;9740 14722;14723;14724;14725;14726;14727;14728;14729;14730;14731;14732;14733;14734;14735 14722 14 EILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS MRHRSLARELSGTIKEILGTAQSVGCNVDG IIDDINSGAVECPAS_______________ K E I A S - 3 1 2 4 2 1 2 4 2 4 1 0 0 0 2 3 1 0 0 3 0 0 35 1 3702.7002 P30050;Q59FI9 P30050 131 165 RPL12 60S ribosomal protein L12 yes no 4 1.4492E-05 52.402 2 0.84037 1.1323 0.55874 2 Median 0.84037 1.1323 0.55874 2 0 Median NaN NaN NaN 0 0 Median 56633000 30474000 26159000 56633000 30474000 26159000 0 0 0 2678 1307 2746 9741;9742 14736;14737;14738 14736 3 EILHCLK LPATLRITGYKSHAKEILHCLKNKYFKELE TGYKSHAKEILHCLKNKYFKELEDLEVDGQ K E I L K N 0 0 0 0 1 0 1 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 911.48987 Q08J23;A0A140T9Y7 Q08J23 89 95 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 2 0.017145 71.359 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26336000 26336000 0 26336000 26336000 0 0 0 0 2679 1451 2747 9743 14739 14739 1 EILIPVFK PFTGDHKQKFYWGHKEILIPVFKNMADAMR KFYWGHKEILIPVFKNMADAMRKHPEVDVL K E I F K N 0 0 0 0 0 0 1 0 0 2 1 1 0 1 1 0 0 0 0 1 0 0 8 0 957.5899 A0A024R1Y2;A0A024R1T9;Q4LE36;P53396;Q8N9C4 A0A024R1Y2 537 544 ACLY;ACLY variant protein ATP-citrate synthase yes no 2 0.022726 89.369 2 0.69916 0.90238 26.358 2 Median 0.69916 0.90238 26.358 2 0 Median NaN NaN NaN 0 0 Median 6573900 3606900 2966900 6573900 3606900 2966900 0 0 0 2680 69 2748 9744;9745 14740;14741 14740 2 EILPFTDRK KMNKQTFPEHCSLCKEILPFTDRKQAVCSN HCSLCKEILPFTDRKQAVCSNGHIWLRCFL K E I R K Q 0 1 0 1 0 0 1 0 0 1 1 1 0 1 1 0 1 0 0 0 0 0 9 1 1117.6132 Q9UKN8;B3KNH2 Q9UKN8 752 760 GTF3C4 General transcription factor 3C polypeptide 4 yes no 3 0.0082399 70.816 2 0.47301 0.62926 8.3195 2 Median 0.47301 0.62926 8.3195 2 0 Median NaN NaN NaN 0 0 Median 6213500 3937400 2276100 6213500 3937400 2276100 0 0 0 2681 1789 2749 9746;9747 14742;14743 14742 2 EILQNTTSLK FVGKDQVTKLILPLKEILQNTTSLKLARKV ILPLKEILQNTTSLKLARKVHETLRRITVG K E I L K L 0 0 1 0 0 1 1 0 0 1 2 1 0 0 0 1 2 0 0 0 0 0 10 0 1145.6292 O75691 O75691 1986 1995 UTP20 Small subunit processome component 20 homolog yes yes 2 0.035964 83.647 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2682 1207 2750 9748 14744 14744 1 EILVGDVGQTVDDPYATFVK CLSEDKKNIILEEGKEILVGDVGQTVDDPY DVGQTVDDPYATFVKMLPDKDCRYALYDAT K E I V K M 1 0 0 3 0 1 1 2 0 1 1 1 0 1 1 0 2 0 1 4 0 0 20 0 2165.0892 G3V1A4;V9HWI5;E9PK25;P23528;E9PP50;E9PLJ3;B4E112;E9PQB7;E9PS23 G3V1A4 37 56 CFL1;HEL-S-15 Cofilin-1 yes no 2 9.2094E-85 242.91 4 1 0.67225 0.83954 90.776 5 Median 0.66456 0.83648 8.7474 4 0 Median 4.2601 6.4351 NaN 1 0 Median 119360000 63388000 55974000 103790000 60132000 43659000 15571000 3256400 12314000 2683 1037 2751 9749;9750;9751;9752;9753 14745;14746;14747;14748;14749;14750;14751;14752;14753;14754;14755 14746 11 EILVGDVGVTITDPFK CLSADKKCIIVEEGKEILVGDVGVTITDPF ILVGDVGVTITDPFKHFVGMLPEKDCRYAL K E I F K H 0 0 0 2 0 0 1 2 0 2 1 1 0 1 1 0 2 0 0 3 0 0 16 0 1701.9189 B7Z9M9;V9HWA6;P60981;F6RFD5 B7Z9M9 37 52 HEL32;DSTN Destrin yes no 2 1.8817E-07 140.01 4 0.42841 0.53982 NaN 1 Median 0.42841 0.53982 NaN 1 0 Median NaN NaN NaN 0 0 Median 11185000 9694800 1490500 11185000 9694800 1490500 0 0 0 2684 921 2752 9754;9755;9756;9757 14756;14757;14758;14759 14759 3 EINARPIK PVGKKEVEHYRKRWREINARPIKKVAEAKA HYRKRWREINARPIKKVAEAKARKKRRMLK R E I I K K 1 1 1 0 0 0 1 0 0 2 0 1 0 0 1 0 0 0 0 0 0 0 8 1 939.55016 Q8IY81;B4DKU3 Q8IY81 733 740 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 0.0097633 120.65 1 2 1.0038 1.3372 17.278 3 Plateau 1.0494 1.3632 NaN 1 0 Median 0.66472 1.0159 4.5519 2 0 Median 33540000 17235000 16304000 15378000 7134300 8243500 18162000 10101000 8060700 2685 1628 2753 9758;9759;9760 14760;14761;14762 14762 3 EINARPIKK PVGKKEVEHYRKRWREINARPIKKVAEAKA YRKRWREINARPIKKVAEAKARKKRRMLKR R E I K K V 1 1 1 0 0 0 1 0 0 2 0 2 0 0 1 0 0 0 0 0 0 0 9 2 1067.6451 Q8IY81;B4DKU3 Q8IY81 733 741 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 0.013536 79.809 1 0.57966 0.94069 NaN 1 Median NaN NaN NaN 0 0 Median 0.57966 0.94069 NaN 1 0 Median 2520700 1500300 1020400 0 0 0 2520700 1500300 1020400 2686 1628 2754 9761 14763 14763 1 EINDCIGGTVLNISK KVPVSVNLLSKNLSREINDCIGGTVLNISK EINDCIGGTVLNISKSGSCSAIRIGHVGMQ R E I S K S 0 0 2 1 1 0 1 2 0 3 1 1 0 0 0 1 1 0 0 1 0 0 15 0 1631.8189 O76021;Q32Q62;J3QSV6;A0PJ61;A0PJ87 O76021 193 207 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 8.5051E-51 229.56 4 2 0.67254 0.87 30.397 5 Median 0.68079 0.89007 3.7131 4 0 Median 0.28168 0.45106 NaN 1 0 Median 1369000000 831880000 537140000 1074000000 647550000 426480000 295000000 184340000 110670000 2687 1210 2755 9762;9763;9764;9765;9766;9767 14764;14765;14766;14767;14768;14769;14770;14771;14772;14773;14774;14775 14764 12 EINSDQATQGNISSDR ISVTPVKNIDPVKNKEINSDQATQGNISSD INSDQATQGNISSDRGKKRTVTAAGAENIQ K E I D R G 1 1 2 2 0 2 1 1 0 2 0 0 0 0 0 3 1 0 0 0 0 0 16 0 1733.7816 G1UI16;Q29RF7;B3KMN2;Q96DB6 G1UI16 1220 1235 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 5.1052E-25 138.77 2 2 0.99045 1.4532 37.695 3 Plateau 0.51658 0.69729 NaN 1 0 Median 0.91205 1.3022 15.517 2 0 Median 18954000 9605300 9349100 4796700 2455500 2341200 14158000 7149800 7008000 2688 1076 2756 9768;9769;9770;9771 14776;14777;14778;14779;14780;14781;14782 14779 7 EIPSATQSPISK TLGVQRPKLEKKDAKEIPSATQSPISKKRK DAKEIPSATQSPISKKRKKKGFLPETKKRK K E I S K K 1 0 0 0 0 1 1 0 0 2 0 1 0 0 2 3 1 0 0 0 0 0 12 0 1256.6612 Q9BQG0;I3L1L3;B4DE42 Q9BQG0 1156 1167 MYBBP1A Myb-binding protein 1A yes no 2 1.1319E-05 97.472 4 2 0.62674 0.90297 12.592 5 Median 0.63177 0.77399 11.883 3 0 Median 0.62529 0.94156 0.62213 2 0 Median 62164000 35499000 26665000 36095000 19368000 16727000 26068000 16131000 9937600 2689 1708 2757 9772;9773;9774;9775;9776;9777 14783;14784;14785;14786;14787;14788;14789;14790;14791 14788 9 EIPTNKQEAEIPGANLNVEGTSTPLLR STYDIVITTYSLVAKEIPTNKQEAEIPGAN GANLNVEGTSTPLLRIAWARIILDEAHNVK K E I L R I 2 1 3 0 0 1 4 2 0 2 3 1 0 0 3 1 3 0 0 1 0 0 27 1 2890.5036 A0A024R0F1;Q9UNY4 A0A024R0F1 702 728 TTF2 Transcription termination factor 2 yes no 3 2.5948E-09 91.541 4 0.8059 1.0672 7.7242 4 Median 0.8059 1.0672 7.7242 4 0 Median NaN NaN NaN 0 0 Median 22620000 12347000 10273000 22620000 12347000 10273000 0 0 0 2690 33 2758 9778;9779;9780;9781 14792;14793;14794;14795;14796;14797;14798;14799;14800 14795 9 EIQAPASADIR DVLEQRGRLQKLVAKEIQAPASADIRVLRG LVAKEIQAPASADIRVLRGHQLSITCLVVT K E I I R V 3 1 0 1 0 1 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 0 11 0 1169.6041 O43818 O43818 130 140 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 3.8625E-08 145.25 3 3 0.90032 1.229 15.769 4 Median 0.90227 1.2481 5.829 3 0 Median 0.6086 0.93989 NaN 1 0 Median 147870000 75058000 72807000 117490000 63863000 53624000 30378000 11195000 19183000 2691 1188 2759 9782;9783;9784;9785;9786;9787 14801;14802;14803;14804;14805;14806;14807;14808 14803 8 EIQELEQLLSSER KLEEKMESQGIMKNKEIQELEQLLSSERQE NKEIQELEQLLSSERQELDCLRKQYLSENE K E I E R Q 0 1 0 0 0 2 4 0 0 1 3 0 0 0 0 2 0 0 0 0 0 0 13 0 1572.7995 P49454 P49454 1676 1688 CENPF Centromere protein F yes yes 2 3.2468E-06 93.258 2 0.95478 1.3311 NaN 1 Median 0.95478 1.3311 NaN 1 0 Median NaN NaN NaN 0 0 Median 6158500 3299200 2859300 6158500 3299200 2859300 0 0 0 2692 1351 2760 9788;9789 14809;14810;14811 14811 3 EIQEPDPTYEEK EMEEIFDDASPGKQKEIQEPDPTYEEKMQT KQKEIQEPDPTYEEKMQTDRANRFEYLLKQ K E I E K M 0 0 0 1 0 1 4 0 0 1 0 1 0 0 2 0 1 0 1 0 0 0 12 0 1476.662 O60264;B7ZAX9;B4DZC0;Q4W5G3 O60264 72 83 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 3.8873E-25 201.84 4 2 2.2753 3.2096 9.8721 6 Median 2.3917 3.0299 7.9699 4 0 Median 2.2072 3.4969 0.87831 2 0 Median 354780000 110080000 244700000 172760000 51775000 120980000 182020000 58301000 123720000 2693 1189 2761 9790;9791;9792;9793;9794;9795 14812;14813;14814;14815;14816;14817;14818;14819;14820;14821;14822;14823;14824;14825 14813 14 EIQNQTLPVDFFAHLR TGTGDPPDTARKFVKEIQNQTLPVDFFAHL IQNQTLPVDFFAHLRYGLLGLGDSEYTYFC K E I L R Y 1 1 1 1 0 2 1 0 1 1 2 0 0 2 1 0 1 0 0 1 0 0 16 0 1926.9952 Q9UBK8;D6RF21;D6RGC7;H0Y963;D6RAZ2;H0Y8S9 Q9UBK8 102 117 MTRR Methionine synthase reductase yes no 3 0.0027229 20.354 1 0.42969 0.58111 NaN 1 Median 0.42969 0.58111 NaN 1 0 Median NaN NaN NaN 0 0 Median 3416700 2354700 1062100 3416700 2354700 1062100 0 0 0 2694 1782 2762 9796 14826 14826 1 EIQTAVR SRLAHYNKRSTITSREIQTAVRLLLPGELA KRSTITSREIQTAVRLLLPGELAKHAVSEG R E I V R L 1 1 0 0 0 1 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 7 0 815.45012 B2R4S9;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;B4DR52;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;O60814;Q0D2M2;A8K9J7;P57053;A0A024RCJ2;Q16778;P33778;P23527;P06899 B2R4S9 94 100 HIST1H2BI;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;H2BFS;HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J no no 1;2 0.013979 125.81 5 2 0.75194 1.0453 18.486 7 Median 0.77704 1.067 11.188 5 0 Median 0.55019 0.77728 5.9423 2 0 Median 1103400000 615770000 487590000 1081400000 601610000 479750000 22008000 14164000 7843700 2695 25;295 2763 9797;9798;9799;9800;9801;9802;9803 14827;14828;14829;14830;14831;14832;14833;14834;14835;14836;14837 14832 11 EIQTLLSHK EDALELTEKLDQDWKEIQTLLSHKTPKSEN LDQDWKEIQTLLSHKTPKSENRDKKEKPKP K E I H K T 0 0 0 0 0 1 1 0 1 1 2 1 0 0 0 1 1 0 0 0 0 0 9 0 1067.5975 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 227 235 NOP14 Nucleolar protein 14 yes no 2 0.00034325 91.069 2 2 0.97052 1.2258 4.6045 3 Plateau 0.96433 1.2233 0.28295 2 0 Median 0.74987 1.1296 NaN 1 0 Median 117600000 64636000 52962000 84699000 40582000 44117000 32900000 24054000 8846000 2696 652 2764 9804;9805;9806;9807 14838;14839;14840;14841 14840 4 EIQTTTGNQQVLVR YLACRDVEKGELVAKEIQTTTGNQQVLVRK KEIQTTTGNQQVLVRKLDLSDTKSIRAFAK K E I V R K 0 1 1 0 0 3 1 1 0 1 1 0 0 0 0 0 3 0 0 2 0 0 14 0 1585.8424 A0A0S2Z583;Q8TC12;A0A0S2Z575 A0A0S2Z583 84 97 RDH11 Retinol dehydrogenase 11 yes no 2 1.2148E-05 119.34 1 0.6501 0.91021 NaN 1 Median 0.6501 0.91021 NaN 1 0 Median NaN NaN NaN 0 0 Median 2107700 1232600 875090 2107700 1232600 875090 0 0 0 2697 476 2765 9808 14842 14842 1 EIQVQHPAAK MGGIVMTNDGNAILREIQVQHPAAKSMIEI NAILREIQVQHPAAKSMIEISRTQDEEVGD R E I A K S 2 0 0 0 0 2 1 0 1 1 0 1 0 0 1 0 0 0 0 1 0 0 10 0 1119.6037 B4DUR8;B3KX11;Q2TU64;Q59H77;P49368;Q5SZX6;Q5SZX9;E9PRC8 B4DUR8 24 33 CCT3 T-complex protein 1 subunit gamma yes no 2 0.019773 54.549 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2666900 2666900 0 2666900 2666900 0 0 0 0 2698 787 2766 9809 14843 14843 1 EIREDLPVNTSK GEDNSTAQDTEELEKEIREDLPVNTSKTRP LEKEIREDLPVNTSKTRPKQEKAFSLKTIS K E I S K T 0 1 1 1 0 0 2 0 0 1 1 1 0 0 1 1 1 0 0 1 0 0 12 1 1399.7307 E5RJU9;A0A024R9D2;Q86UE4 E5RJU9 412 423 MTDH Protein LYRIC yes no 3 0.051168 22.493 1 0.49775 0.7359 NaN 1 Median NaN NaN NaN 0 0 Median 0.49775 0.7359 NaN 1 0 Median 4048500 2666600 1381900 0 0 0 4048500 2666600 1381900 2699 218 2767 9810 14844 14844 1 EIRNPDSLK AQEEADYIEWLKGQKEIRNPDSLKELTHLK WLKGQKEIRNPDSLKELTHLKEYWNDPELD K E I L K E 0 1 1 1 0 0 1 0 0 1 1 1 0 0 1 1 0 0 0 0 0 0 9 1 1070.572 Q8N9T8;A0A024R7C4;B4DUT2;B4DUY9;B7ZLF4;H0YFD2;F8WFC1 Q8N9T8 211 219 KRI1;FLJ12949 Protein KRI1 homolog yes no 2 0.018241 96.034 1 1 0.56542 0.81893 5.9881 2 Median 0.61541 0.85435 NaN 1 0 Median 0.51949 0.78497 NaN 1 0 Median 9523500 5415500 4107900 2427900 1429100 998800 7095600 3986500 3109100 2700 1645 2768 9811;9812 14845;14846 14846 2 EIRPTYAGSK SKYAELLAIIEELGKEIRPTYAGSKSAMER EELGKEIRPTYAGSKSAMERLKRG______ K E I S K S 1 1 0 0 0 0 1 1 0 1 0 1 0 0 1 1 1 0 1 0 0 0 10 1 1120.5877 F5GZF0;O14519;E9PKR4;Q6IAV4;O75956 F5GZF0 48 57 CDK2AP1;CDK2AP2;DOC-1R Cyclin-dependent kinase 2-associated protein 1;Cyclin-dependent kinase 2-associated protein;Cyclin-dependent kinase 2-associated protein 2 yes no 2;3 1.4657E-05 117.52 4 2 0.65863 0.86947 33.318 6 Median 0.62695 0.81479 9.1147 4 0 Median 0.97579 1.5389 7.5841 2 0 Median 76620000 41694000 34926000 50432000 28024000 22408000 26188000 13671000 12518000 2701 1055 2769 9813;9814;9815;9816;9817;9818 14847;14848;14849;14850;14851;14852;14853;14854 14849 8 EISDDEAEEEKGEKEEEDKDDEEKPK IGYPITLYLEKEREKEISDDEAEEEKGEKE GEKEEEDKDDEEKPKIEDVGSDEEDDSGKD K E I P K I 1 0 0 5 0 0 11 1 0 1 0 5 0 0 1 1 0 0 0 0 0 0 26 4 3078.3161 A0A024RD80;P08238;B4DMA2;B4DGL0;Q6PK50;Q58FF7 A0A024RD80 224 249 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 4 0.014347 18.699 1 0.32293 0.40522 NaN 1 Median 0.32293 0.40522 NaN 1 0 Median NaN NaN NaN 0 0 Median 4826400 3072100 1754300 4826400 3072100 1754300 0 0 0 2702 312 2770 9819 14855;14856 14856 2 EISEASENIYSDVR KMPGQSVRKKTRKAKEISEASENIYSDVRG KEISEASENIYSDVRGLSQNQQIPQNSVTP K E I V R G 1 1 1 1 0 0 3 0 0 2 0 0 0 0 0 3 0 0 1 1 0 0 14 0 1610.7424 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1781 1794 AHCTF1 Protein ELYS yes no 2 6.6874E-87 261.22 4 2 0.70932 0.95697 6.6003 6 Median 0.74692 1.0009 5.7834 4 0 Median 0.55492 0.90124 2.7932 2 0 Median 225940000 138340000 87604000 94602000 53860000 40742000 131340000 84475000 46862000 2703 1670 2771 9820;9821;9822;9823;9824;9825 14857;14858;14859;14860;14861;14862;14863;14864;14865;14866;14867;14868;14869;14870 14859 14 EISEGDEVEVYSR PFNEVRLPPPPDIKKEISEGDEVEVYSRAN KKEISEGDEVEVYSRANDQEPCGWWLAKVR K E I S R A 0 1 0 1 0 0 4 1 0 1 0 0 0 0 0 2 0 0 1 2 0 0 13 0 1510.6787 A0A0F7KYT8;A0A0F7L0Q8;B4DXZ6;A0A0F7L1S3;P51114;C9JAJ4 A0A0F7KYT8 58 70 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 2 5.6576E-26 203.02 4 2 0.64727 0.8738 25.988 6 Median 0.6066 0.8182 7.3827 4 0 Median 0.89888 1.351 1.851 2 0 Median 119180000 68701000 50476000 85932000 51525000 34407000 33245000 17176000 16069000 2704 438 2772 9826;9827;9828;9829;9830;9831 14871;14872;14873;14874;14875;14876;14877;14878;14879 14874 9 EISFAYEVLSNPEK EYHPDKNPNAGDKFKEISFAYEVLSNPEKR KEISFAYEVLSNPEKRELYDRYGEQGLREG K E I E K R 1 0 1 0 0 0 3 0 0 1 1 1 0 1 1 2 0 0 1 1 0 0 14 0 1624.7985 A0A024R6S1;O60884;T2DN57;T2DPK5 A0A024R6S1 49 62 DNAJA2 DnaJ homolog subfamily A member 2 yes no 2 6.9324E-06 99.215 2 0.44712 0.56673 NaN 1 Median 0.44712 0.56673 NaN 1 0 Median NaN NaN NaN 0 0 Median 15631000 11955000 3675200 15631000 11955000 3675200 0 0 0 2705 164 2773 9832;9833 14880;14881;14882 14880 3 EISHVLNFLIR RRGVLANALAGRDEKEISHVLNFLIRNLSQ RDEKEISHVLNFLIRNLSQPRFAPVLINAA K E I I R N 0 1 1 0 0 0 1 0 1 2 2 0 0 1 0 1 0 0 0 1 0 0 11 0 1339.7612 Q8TED0;H0Y8P4 Q8TED0 417 427 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2;3 3.8559E-05 107.55 5 4 0.74766 1.1331 13.039 7 Median 0.84372 1.1352 17.104 4 0 Median 0.74766 1.1331 8.2295 3 0 Median 142140000 83069000 59068000 69429000 35685000 33743000 72708000 47384000 25325000 2706 1660 2774 9834;9835;9836;9837;9838;9839;9840;9841;9842 14883;14884;14885;14886;14887;14888;14889;14890;14891;14892;14893;14894;14895;14896 14887 14 EISQDSLAAR NEEYGLRLASHIFVKEISQDSLAARDGNIQ HIFVKEISQDSLAARDGNIQEGDVVLKING K E I A R D 2 1 0 1 0 1 1 0 0 1 1 0 0 0 0 2 0 0 0 0 0 0 10 0 1088.5462 A0A087X0K9;Q6MZU1;G5E9E7;A9CQZ8;G3V1L9;Q07157;H0YKB1 A0A087X0K9 198 207 TJP1;DKFZp686A1195 Tight junction protein ZO-1 yes no 2 0.0316 41.427 1 0.73742 1.0199 NaN 1 Median 0.73742 1.0199 NaN 1 0 Median NaN NaN NaN 0 0 Median 50555000 26366000 24189000 50555000 26366000 24189000 0 0 0 2707 371 2775 9843 14897 14897 1 EITALAPSTMK GGTTMYPGIADRMQKEITALAPSTMKIKII RMQKEITALAPSTMKIKIIAPPERKYSVWI K E I M K I 2 0 0 0 0 0 1 0 0 1 1 1 1 0 1 1 2 0 0 0 0 0 11 0 1160.6111 B7Z6P1;P68133;P68032;A8K3K1;D2JYH4;P63267;P62736;Q13707;Q7Z7J6;A6NL76;B4DUI8;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;B3KUD3;Q96DE1;Q96FU6;A4UCT3;F1BXA6;A5GZ75;B3KPP5;Q9UE89;P63261;B4E3A4;B4DVQ0 Q53GK6 316 326 ACTA1;ACTC1;ACTA2;ACTG2;PS1TP5BP1;ACTB;ACTG1 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2 5.5206E-06 120.45 9 3 0.78857 1.0448 79.917 10 Median 0.75506 0.99212 5.7221 7 0 Median 2.7867 4.3175 29.105 3 0 Median 1664900000 683050000 981800000 889960000 478710000 411250000 774900000 204340000 570560000 2708 1388;1420;914 2776;2777 9844;9845;9846;9847;9848;9849;9850;9851;9852;9853;9854;9855 14898;14899;14900;14901;14902;14903;14904;14905;14906;14907;14908;14909;14910;14911;14912;14913;14914;14915;14916;14917;14918;14919;14920;14921 14906 313 24 EITCDNFDETVK ISPEEKFVITTTSRKEITCDNFDETVKDGV SRKEITCDNFDETVKDGVTLYLLQSVNQLL K E I V K D 0 0 1 2 1 0 2 0 0 1 0 1 0 1 0 0 2 0 0 1 0 0 12 0 1469.6344 A6NHR9 A6NHR9 81 92 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 3.2311E-12 163.88 4 0.80809 1.026 7.2203 4 Linear 0.80809 1.026 7.2203 4 0 Linear NaN NaN NaN 0 0 Median 19181000 11059000 8121900 19181000 11059000 8121900 0 0 0 2709 568 2778 9856;9857;9858;9859 14922;14923;14924;14925;14926;14927;14928;14929;14930 14924 9 EITDIAAAAESLQPK SGPPTPGPTTLGPKKEITDIAAAAESLQPK EITDIAAAAESLQPKGYTLATTQVKTPIPL K E I P K G 4 0 0 1 0 1 2 0 0 2 1 1 0 0 1 1 1 0 0 0 0 0 15 0 1555.8094 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2;G1UI29;A0A087X0E3 A0A0A0MS59 386 400 SRCAP Helicase SRCAP yes no 2 0.0069608 37.94 1 0.64922 0.91301 NaN 1 Median NaN NaN NaN 0 0 Median 0.64922 0.91301 NaN 1 0 Median 6024000 3576200 2447800 0 0 0 6024000 3576200 2447800 2710 394 2779 9860 14931 14931 1 EITEGDEVEVYSR PFGDVRLPPPADYNKEITEGDEVEVYSRAN NKEITEGDEVEVYSRANEQEPCGWWLARVR K E I S R A 0 1 0 1 0 0 4 1 0 1 0 0 0 0 0 1 1 0 1 2 0 0 13 0 1524.6944 P51116;I3L1Z2 P51116 68 80 FXR2 Fragile X mental retardation syndrome-related protein 2 yes no 2 0.00044418 99.343 2 1 0.84175 1.1626 NaN 1 Median 0.84175 1.1626 NaN 1 0 Median NaN NaN NaN 0 0 Median 14049000 11023000 3026200 10767000 7741100 3026200 3282000 3282000 0 2711 1360 2780 9861;9862;9863 14932;14933;14934;14935 14933 3 EITGSSLIQK VKGFFYVSLLLDILKEITGSSLIQKTDSDE LDILKEITGSSLIQKTDSDEEVAMLLDTVQ K E I Q K T 0 0 0 0 0 1 1 1 0 2 1 1 0 0 0 2 1 0 0 0 0 0 10 0 1074.5921 Q86XI2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 931 940 NCAPG2 Condensin-2 complex subunit G2 yes no 2 0.026533 50.805 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3399900 0 3399900 0 0 0 3399900 0 3399900 2712 1621 2781 9864 14936 14936 1 EITTFEGCK YVTFSMLEDVQRALKEITTFEGCKINVTVA VQRALKEITTFEGCKINVTVAKKKLRNKTK K E I C K I 0 0 0 0 1 0 2 1 0 1 0 1 0 1 0 0 2 0 0 0 0 0 9 0 1083.4907 A0A024R753;Q9NW13;B4DJ90;C9JAA9;C9JE21;A0A0S2Z5E5 A0A024R753 64 72 RBM28 RNA-binding protein 28 yes no 2 0.0022049 85.064 2 1.1574 1.4624 11.429 2 Median 1.1574 1.4624 11.429 2 0 Median NaN NaN NaN 0 0 Median 20057000 10648000 9408400 20057000 10648000 9408400 0 0 0 2713 169 2782 9865;9866 14937;14938 14938 2 EIVHIQAGQCGNQIGTK ______________________________ VHIQAGQCGNQIGTKFWEVISDEHGIDQAG R E I T K F 1 0 1 0 1 3 1 3 1 3 0 1 0 0 0 0 1 0 0 1 0 0 17 0 1851.9261 Q2NKY5;Q9BUF5;K7ESM5;B4DP54;K7EL29;K7ESQ3;K7EQT3;K7EJ64;K7ERA8;K7EJZ4;K7EN98;K7EPE5 Q2NKY5 3 19 TUBB6 Tubulin beta-6 chain no no 3 0.002176 62.916 1 0.43369 0.56109 NaN 1 Median 0.43369 0.56109 NaN 1 0 Median NaN NaN NaN 0 0 Median 2466800 1855400 611300 2466800 1855400 611300 0 0 0 2714 1528;1716 2783 9867 14939 14939 1 EIVHLQAGQCGNQIGAK ______________________________ VHLQAGQCGNQIGAKFWEVISDEHGIDPTG R E I A K F 2 0 1 0 1 3 1 3 1 2 1 1 0 0 0 0 0 0 0 1 0 0 17 0 1821.9156 Q8IZ29;P68371;Q8N6N5;Q8IWP6;B4DFH6;M0R2D3;M0QY85;B4DNW1;M0R0X0;M0QY37;M0QX14;M0R042;M0QZL7;M0QYM7;M0R2T4;P04350;B4DJ43;M0R278 Q8IZ29 3 19 TUBB2C;TUBB4B;TUBB4A Tubulin beta-4B chain;Tubulin beta-4A chain no no 2;3 2.4154E-115 284.51 9 0.42491 0.53082 18.325 7 Median 0.42491 0.53082 18.325 7 0 Median NaN NaN NaN 0 0 Median 367540000 261390000 106150000 367540000 261390000 106150000 0 0 0 2715 1423;1230 2784 9868;9869;9870;9871;9872;9873;9874;9875;9876 14940;14941;14942;14943;14944;14945;14946;14947;14948;14949;14950;14951;14952;14953;14954;14955 14945 16 EIVHTFK FAAYGNVFSAFARNKEIVHTFKGHKAEIHF FSAFARNKEIVHTFKGHKAEIHFLQPFGDH K E I F K G 0 0 0 0 0 0 1 0 1 1 0 1 0 1 0 0 1 0 0 1 0 0 7 0 872.4756 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 97 103 WDR36 WD repeat-containing protein 36 yes no 2 0.0089473 128.86 3 1 1.0049 1.0545 10.484 4 Linear 0.87297 1.0607 5.2688 3 0 Plateau 0.59364 0.89766 NaN 1 0 Median 138670000 73791000 64883000 122980000 64137000 58845000 15691000 9653800 6037700 2716 404 2785 9877;9878;9879;9880 14956;14957;14958;14959;14960 14958 5 EIVNNIR IGTGWSCKIPNFDVREIVNNIRRLMDGEEP KIPNFDVREIVNNIRRLMDGEEPLPMLPSY R E I I R R 0 1 2 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 7 0 856.47667 P11388 P11388 871 877 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0042129 132.8 4 2 0.85768 1.2336 8.8018 6 Median 0.89073 1.2231 6.4807 4 0 Median 0.82171 1.3647 2.8725 2 0 Median 1357200000 716480000 640690000 683220000 358470000 324760000 673950000 358020000 315930000 2717 1256 2786 9881;9882;9883;9884;9885;9886 14961;14962;14963;14964;14965;14966;14967;14968;14969;14970;14971 14963 11 EIVNNIRR IGTGWSCKIPNFDVREIVNNIRRLMDGEEP IPNFDVREIVNNIRRLMDGEEPLPMLPSYK R E I R R L 0 2 2 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 8 1 1012.5778 P11388 P11388 871 878 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 5.4725E-06 167.24 5 4 0.84066 1.264 11.923 8 Median 0.90836 1.2283 15.645 5 0 Median 0.81357 1.2765 2.3142 3 0 Median 801680000 442910000 358770000 632870000 347720000 285150000 168810000 95193000 73621000 2718 1256 2787 9887;9888;9889;9890;9891;9892;9893;9894;9895 14972;14973;14974;14975;14976;14977;14978;14979;14980;14981 14978 10 EIVQQSLSVGNFAAR FPVPSPYLLSDKEVREIVQQSLSVGNFAAR EIVQQSLSVGNFAARLLVRLFPELFTAENL R E I A R L 2 1 1 0 0 2 1 1 0 1 1 0 0 1 0 2 0 0 0 2 0 0 15 0 1617.8475 Q5T5X7 Q5T5X7 728 742 BEND3 BEN domain-containing protein 3 yes yes 2 0.00071063 52.693 1 0.88798 1.1445 NaN 1 Median NaN NaN NaN 0 0 Median 0.88798 1.1445 NaN 1 0 Median 5006500 2231200 2775300 0 0 0 5006500 2231200 2775300 2719 1569 2788 9896 14982 14982 1 EIVRDIK ILTERGYSFTTTAEREIVRDIKEKLCYVAL SFTTTAEREIVRDIKEKLCYVALDFEQEMA R E I I K E 0 1 0 1 0 0 1 0 0 2 0 1 0 0 0 0 0 0 0 1 0 0 7 1 871.51272 B7Z6P1;P68133;P68032;A8K3K1;D2JYH4;P63267;P62736;B3KW67;Q13707;B4DUI8;G8FSY7;A0A173GMX0;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;B3KUD3;Q6S8J3;A5A3E0;A4UCT3;P0CG38;P0CG39;B3KPP5;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;V9HVZ7 Q53GK6 207 213 ACTA1;ACTC1;ACTA2;ACTG2;ACTB;PS1TP5BP1;ACTG1;POTEE;POTEF;POTEI;POTEJ;HEL-176 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2 0.0303 120.62 1 0.71033 0.94904 NaN 1 Median 0.71033 0.94904 NaN 1 0 Median NaN NaN NaN 0 0 Median 9118400 4987000 4131400 9118400 4987000 4131400 0 0 0 2720 1388;1420;914;1859 2789 9897 14983 14983 1 EIVVIHQDPEALK VIRDRKTIPIKYPLKEIVVIHQDPEALKDI LKEIVVIHQDPEALKDIKSLEKYIIEELNV K E I L K D 1 0 0 1 0 1 2 0 1 2 1 1 0 0 1 0 0 0 0 2 0 0 13 0 1489.814 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z355;Q7Z3U5;B4DVX2;Q6P0M4;Q7L4K8 Q59G75 866 878 IARS;DKFZp686L17145;DKFZp686L0869 Isoleucine--tRNA ligase, cytoplasmic yes no 2;3 0.00011946 113.67 3 2 0.67067 0.87036 3.8676 2 Median 0.67067 0.87036 3.8676 2 0 Median NaN NaN NaN 0 0 Median 16042000 3626300 12416000 6416700 3626300 2790400 9625700 0 9625700 2721 1334 2790 9898;9899;9900;9901;9902 14984;14985;14986;14987;14988;14989 14986 6 EIVVLETLEDIDK EFTAFLHPEEFEHMKEIVVLETLEDIDKNG MKEIVVLETLEDIDKNGDGFVD________ K E I D K N 0 0 0 2 0 0 3 0 0 2 2 1 0 0 0 0 1 0 0 2 0 0 13 0 1514.808 E9PP27;Q5J7V8;V9HW95;Q15293 E9PP27 39 51 RCN1;HEL-S-84 Reticulocalbin-1 yes no 2 6.3236E-11 152.69 2 0.28244 0.37157 NaN 1 Median 0.28244 0.37157 NaN 1 0 Median NaN NaN NaN 0 0 Median 3577800 2955000 622830 3577800 2955000 622830 0 0 0 2722 1041 2791 9903;9904 14990;14991;14992;14993 14990 4 EIWELIGIPEDQR EESIVCLQKALNHLREIWELIGIPEDQRLQ LREIWELIGIPEDQRLQRTEVVKKHIKELL R E I Q R L 0 1 0 1 0 1 3 1 0 3 1 0 0 0 1 0 0 1 0 0 0 0 13 0 1596.8148 A0A024RC67;O43663;H0YM42;H0YLA0 A0A024RC67 24 36 PRC1 Protein regulator of cytokinesis 1 yes no 2 0.024575 43.084 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2269500 2269500 0 0 0 0 2269500 2269500 0 2723 288 2792 9905 14994;14995 14994 2 EIYDDLQALHTDDPLTWDYVAR LSIAQLFDFAKDLQKEIYDDLQALHTDDPL ALHTDDPLTWDYVARRELEIESQTEEQPTT K E I A R R 2 1 0 5 0 1 1 0 1 1 3 0 0 0 1 0 2 1 2 1 0 0 22 0 2648.2395 B3KQ21;Q9NYH9;B3KX32;B4DSL9;B7Z9G4 B3KQ21 258 279 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 3 0.011637 21.129 2 0.61007 0.93102 6.2739 2 Median NaN NaN NaN 0 0 Median 0.61007 0.93102 6.2739 2 0 Median 43168000 28241000 14927000 0 0 0 43168000 28241000 14927000 2724 768 2793 9906;9907 14996;14997 14996 2 EIYEELGRPGEEDLD RSMLESMLNRILAVREIYEELGRPGEEDLD EIYEELGRPGEEDLD_______________ R E I L D - 0 1 0 2 0 0 5 2 0 1 2 0 0 0 1 0 0 0 1 0 0 0 15 1 1762.7897 A6NHN7;A6NHB5;Q14202 A6NHN7 1266 1280 ZMYM3 Zinc finger MYM-type protein 3 yes no 2 5.5114E-05 126.71 1 2 1.0624 1.5113 0.91488 2 Median NaN NaN NaN 0 0 Median 1.0624 1.5113 0.91488 2 0 Median 21510000 9663900 11846000 1320000 0 1320000 20190000 9663900 10526000 2725 565 2794 9908;9909;9910 14998;14999;15000;15001;15002 15000 5 EIYENMAPGENK PKPLKFLRPHYGKLKEIYENMAPGENKRFA KLKEIYENMAPGENKRFAADIISVLAMTMS K E I N K R 1 0 2 0 0 0 3 1 0 1 0 1 1 0 1 0 0 0 1 0 0 0 12 0 1393.6184 Q59EG8;Q13200;B4DM22;Q9NSM5;C9JPC0;H7C2Q3 Q59EG8 113 124 PSMD2;DKFZp564A2282 26S proteasome non-ATPase regulatory subunit 2 yes no 2 0.0011313 57.174 2 4.9318 6.6345 22.938 2 Median NaN NaN NaN 0 0 Median 4.9318 6.6345 22.938 2 0 Median 7478200 1039300 6439000 0 0 0 7478200 1039300 6439000 2726 1465 2795 9911;9912 15003;15004 15004 661 2 EIYPYVIQELRPTLNELGISTPEELGLDKV VRILEVVKDKAGPHKEIYPYVIQELRPTLN ELGISTPEELGLDKV_______________ K E I K V - 0 1 1 1 0 1 5 2 0 3 5 1 0 0 3 1 2 0 2 2 0 0 30 2 3427.8127 H3BRM5;H3BV69;P20674;Q71UP1 H3BRM5 40 69 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes no 3 5.9099E-12 93.392 1 0.52324 0.69509 NaN 1 Median 0.52324 0.69509 NaN 1 0 Median NaN NaN NaN 0 0 Median 33367000 20829000 12539000 33367000 20829000 12539000 0 0 0 2727 1109 2796 9913 15005 15005 1 EKADEVVAPGQEK TTSKLGTGNRMYHTKEKADEVVAPGQEKIS TKEKADEVVAPGQEKISSLSGAHRKRRRWP K E K E K I 2 0 0 1 0 1 3 1 0 0 0 2 0 0 1 0 0 0 0 2 0 0 13 1 1398.6991 Q8IY37 Q8IY37 130 142 DHX37 Probable ATP-dependent RNA helicase DHX37 yes yes 2 3.8172E-05 96.334 1 2 0.42545 0.62078 69.927 3 Median 1.5134 1.8222 NaN 1 0 Median 0.38021 0.55212 16.574 2 0 Median 8625900 5335000 3290900 1823400 573870 1249500 6802600 4761200 2041400 2728 1627 2797 9914;9915;9916 15006;15007;15008 15007 3 EKAEALEDLVGFK LGNLPGSKRQPQTPKEKAEALEDLVGFKEL PKEKAEALEDLVGFKELFQTPGHTEESMTD K E K F K E 2 0 0 1 0 0 3 1 0 0 2 2 0 1 0 0 0 0 0 1 0 0 13 1 1447.7559 P46013 P46013 2429 2441 MKI67 Antigen KI-67 yes yes 2;3 2.4154E-22 207.47 8 2 1.0255 1.2838 17.623 8 Median 1.0255 1.2579 15.018 6 0 Median 0.99942 1.6011 13.503 2 0 Median 214850000 104770000 110080000 167070000 79969000 87104000 47772000 24796000 22976000 2729 1342 2798 9917;9918;9919;9920;9921;9922;9923;9924;9925;9926 15009;15010;15011;15012;15013;15014;15015;15016;15017;15018;15019;15020;15021;15022 15014 14 EKEDFHSYLPIIDPILSK NSAVGEHEKVINNQKEKEDFHSYLPIIDPI DFHSYLPIIDPILSKSKSYKNEVTPSSTTA K E K S K S 0 0 0 2 0 0 2 0 1 3 2 2 0 1 2 2 0 0 1 0 0 0 18 1 2143.1201 Q8IZT6;B3KWI2 Q8IZT6 537 554 ASPM Abnormal spindle-like microcephaly-associated protein yes no 3 0.0071428 53.554 1 0.72464 0.87201 NaN 1 Median 0.72464 0.87201 NaN 1 0 Median NaN NaN NaN 0 0 Median 2964800 1246300 1718400 2964800 1246300 1718400 0 0 0 2730 1631 2799 9927 15023 15023 1 EKEEEEEPEGKPSDAESSESSDDEK KRKKKLRLLEQQELREKEEEEEPEGKPSDA KPSDAESSESSDDEKAWVEEVRKQRRLLQQ R E K E K A 1 0 0 3 0 0 10 1 0 0 0 3 0 0 2 5 0 0 0 0 0 0 25 2 2795.1265 Q9BSC4;B4DS83 Q9BSC4 531 555 NOL10 Nucleolar protein 10 yes no 3 0.011591 43.035 1 0.49077 0.58521 NaN 1 Median 0.49077 0.58521 NaN 1 0 Median NaN NaN NaN 0 0 Median 656800 491100 165710 656800 491100 165710 0 0 0 2731 1710 2800 9928 15024 15024 1 EKEELVLELQTAK DNIKELELEVINLQKEKEELVLELQTAKKD QKEKEELVLELQTAKKDANQAKLSERRRKR K E K A K K 1 0 0 0 0 1 4 0 0 0 3 2 0 0 0 0 1 0 0 1 0 0 13 1 1528.8348 Q59HG1;O95239;Q6PKB2;B4DYE2 Q59HG1 577 589 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2;3 4.7978E-10 142.12 4 4 0.66542 0.96697 11.407 6 Median 0.86358 1.0584 9.8749 2 0 Median 0.59902 0.94662 12.433 4 0 Median 95936000 60762000 35175000 37002000 24675000 12326000 58935000 36086000 22848000 2732 1216 2801 9929;9930;9931;9932;9933;9934;9935;9936 15025;15026;15027;15028;15029;15030;15031;15032;15033;15034 15033 10 EKEELVLELQTAKK DNIKELELEVINLQKEKEELVLELQTAKKD KEKEELVLELQTAKKDANQAKLSERRRKRL K E K K K D 1 0 0 0 0 1 4 0 0 0 3 3 0 0 0 0 1 0 0 1 0 0 14 2 1656.9298 Q59HG1;O95239;Q6PKB2;B4DYE2 Q59HG1 577 590 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 3 0.0014689 47.301 2 0.62659 1.0859 7.6897 2 Median NaN NaN NaN 0 0 Median 0.62659 1.0859 7.6897 2 0 Median 27750000 16702000 11047000 0 0 0 27750000 16702000 11047000 2733 1216 2802 9937;9938 15035;15036 15035 2 EKEPIVGSTDYGKDEDSAEALLK QQYFADANEAESWMREKEPIVGSTDYGKDE TDYGKDEDSAEALLKKHEALMSDLSAYGSS R E K L K K 2 0 0 3 0 0 4 2 0 1 2 3 0 0 1 2 1 0 1 1 0 0 23 2 2493.2122 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 908 930 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 3 8.7799E-07 97.57 3 0.87726 1.0314 19.51 3 Median 0.87726 1.0314 19.51 3 0 Median NaN NaN NaN 0 0 Median 19409000 9526200 9882500 19409000 9526200 9882500 0 0 0 2734 1476 2803 9939;9940;9941 15037;15038;15039;15040;15041;15042;15043;15044 15038 8 EKIDFADTVTK GMEEHPELQQFVGKREKIDFADTVTKYDRR VGKREKIDFADTVTKYDRRFKGVKRDLLLT R E K T K Y 1 0 0 2 0 0 1 0 0 1 0 2 0 1 0 0 2 0 0 1 0 0 11 1 1265.6503 Q4KMR3;Q12965;H0YNQ8 Q4KMR3 762 772 MYO1E Unconventional myosin-Ie yes no 2 0.032412 99.568 1 0.52482 0.64797 NaN 1 Median 0.52482 0.64797 NaN 1 0 Median NaN NaN NaN 0 0 Median 6589500 4228500 2361000 6589500 4228500 2361000 0 0 0 2735 1459 2804 9942 15045 15045 1 EKLEEEENLTR DEEIKRAEDLCRLMKEKLEEEENLTRELKS RLMKEKLEEEENLTRELKSEIERLQKRMAE K E K T R E 0 1 1 0 0 0 5 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 11 1 1388.6783 A0A024RAC0;Q86V48;E5RFK8;Q05DE3 A0A024RAC0 94 104 LUZP1 Leucine zipper protein 1 yes no 2 0.00022627 134.84 3 0.82596 1.0741 20.753 3 Median 0.82596 1.0741 20.753 3 0 Median NaN NaN NaN 0 0 Median 29249000 16043000 13206000 29249000 16043000 13206000 0 0 0 2736 238 2805 9943;9944;9945 15046;15047;15048;15049 15046 4 EKLPSLALPEGLGEPQGPEGPGGR CHAPDEQGLEARRQREKLPSLALPEGLGEP EGLGEPQGPEGPGGRVEEPLEGVGPWQCPE R E K G R V 1 1 0 0 0 1 4 6 0 0 4 1 0 0 5 1 0 0 0 0 0 0 24 1 2384.2336 Q4VC44 Q4VC44 188 211 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes yes 3 0.00075061 51.966 1 0.59845 0.77393 NaN 1 Median 0.59845 0.77393 NaN 1 0 Median NaN NaN NaN 0 0 Median 1047100 595400 451660 1047100 595400 451660 0 0 0 2737 1536 2806 9946 15050 15050 1 EKPDIFQLVSVK TLAQAEDSVFVIVNKEKPDIFQLVSVKLPK VNKEKPDIFQLVSVKLPKSSSQEVEAKELS K E K V K L 0 0 0 1 0 1 1 0 0 1 1 2 0 1 1 1 0 0 0 2 0 0 12 1 1401.7868 A8K330;Q8IWA0 A8K330 122 133 WDR75 WD repeat-containing protein 75 yes no 2;3 0.00029389 136.81 4 1 0.86445 1.0604 6.8209 5 Median 0.86475 1.0625 6.1794 4 0 Median 0.61525 0.99407 NaN 1 0 Median 155730000 87852000 67878000 127780000 70350000 57429000 27951000 17501000 10449000 2738 588 2807 9947;9948;9949;9950;9951 15051;15052;15053;15054;15055;15056 15053 6 EKPDSVDGQQPLVNGVP EGSRLRTGKDRNQKKEKPDSVDGQQPLVNG PDSVDGQQPLVNGVP_______________ K E K V P - 0 0 1 2 0 2 1 2 0 0 1 1 0 0 3 1 0 0 0 3 0 0 17 1 1777.8846 X5DQX7;Q06787;W5ZQ92;R9WQY1;A8MQB8;G3V0J0;X5D907;Q59GC1;B4DFH8;B4DZ17 X5DQX7 616 632 FMR1 Fragile X mental retardation protein 1 yes no 2 0.046993 54.772 1 0.94174 1.2212 NaN 1 Median 0.94174 1.2212 NaN 1 0 Median NaN NaN NaN 0 0 Median 2152500 832480 1320000 2152500 832480 1320000 0 0 0 2739 1447 2808 9952 15057 15057 1 EKPEEIQDPAALTSDAEQPSGFTFSFFDSDTK SEKEEGTPWNEDCGKEKPEEIQDPAALTSD QPSGFTFSFFDSDTKDIKEDRVSVTQAGVQ K E K T K D 3 0 0 4 0 2 4 1 0 1 1 2 0 4 3 4 3 0 0 0 0 0 32 1 3533.5998 F5H101;A0A024R250;Q76FK4;Q6AI50;A6H8Z4 F5H101 1023 1054 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 3 8.2674E-15 98.76 3 0.82632 1.0147 2.278 3 Median 0.82632 1.0147 2.278 3 0 Median NaN NaN NaN 0 0 Median 22033000 11526000 10507000 22033000 11526000 10507000 0 0 0 2740 80 2809 9953;9954;9955 15058;15059;15060;15061;15062 15058 5 EKPLEEPDAQGR TFEGRQRERFDVGPKEKPLEEPDAQGRASE GPKEKPLEEPDAQGRASEDRRRERERGRNW K E K G R A 1 1 0 1 0 1 3 1 0 0 1 1 0 0 2 0 0 0 0 0 0 0 12 1 1367.6681 Q9BTC0 Q9BTC0 2097 2108 DIDO1 Death-inducer obliterator 1 yes yes 2 0.0016938 107.11 2 1 0.59028 0.87261 18.171 2 Median 0.55589 0.76739 NaN 1 0 Median 0.62679 0.99225 NaN 1 0 Median 15280000 9696600 5583800 2586900 1761900 825020 12694000 7934700 4758800 2741 1713 2810 9956;9957;9958 15063;15064;15065 15064 3 EKPYFPIPEEYTFIQNVPLEDR VLCHNCAVEFNFGQKEKPYFPIPEEYTFIQ PEEYTFIQNVPLEDRVRGPKGPEEKKDCEV K E K D R V 0 1 1 1 0 1 4 0 0 2 1 1 0 2 4 0 1 0 2 1 0 0 22 1 2723.3483 Q96BA7;B3KX72;B4DLR3;Q00839;Q7Z4Q5 Q96BA7 360 381 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 3 4.6313E-66 163.91 4 1 0.39261 0.51538 94.883 5 Median 0.39071 0.51442 2.2187 4 0 Median 2.5593 4.3212 NaN 1 0 Median 813580000 542180000 271400000 708050000 513980000 194060000 105530000 28199000 77335000 2742 788 2811 9959;9960;9961;9962;9963 15066;15067;15068;15069;15070;15071;15072;15073;15074;15075;15076 15070 11 EKQDEQVGLPGK DLATFIEELEAVEAKEKQDEQVGLPGKGGK EAKEKQDEQVGLPGKGGKAKGKKTQMAEVL K E K G K G 0 0 0 1 0 2 2 2 0 0 1 2 0 0 1 0 0 0 0 1 0 0 12 1 1326.6779 P11388 P11388 1185 1196 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 3.8461E-107 285.88 7 4 0.88347 1.1802 7.5553 11 Median 0.90875 1.1107 4.252 7 0 Median 0.79131 1.2766 3.1865 4 0 Median 1419000000 743090000 675860000 1049900000 542980000 506950000 369020000 200110000 168910000 2743 1256 2812 9964;9965;9966;9967;9968;9969;9970;9971;9972;9973;9974 15077;15078;15079;15080;15081;15082;15083;15084;15085;15086;15087;15088;15089;15090;15091;15092;15093;15094;15095;15096 15079 20 EKVEELIK DFNYILNMSLWSLTKEKVEELIKQRDAKGR SLWSLTKEKVEELIKQRDAKGREVNDLKRK K E K I K Q 0 0 0 0 0 0 3 0 0 1 1 2 0 0 0 0 0 0 0 1 0 0 8 1 986.56481 Q71UH4;Q02880;B4DKD0;Q59H80;B4DLV2;Q8WTY5;Q6W6M6;B7ZB27 Q71UH4 1129 1136 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.031873 78.334 1 0.66109 0.816 NaN 1 Median 0.66109 0.816 NaN 1 0 Median NaN NaN NaN 0 0 Median 37497000 22964000 14533000 37497000 22964000 14533000 0 0 0 2744 1437 2813 9975 15097 15097 1 EKYDTDFYILDK DLSTPNEKLLGHLVKEKYDTDFYILDKYPL LVKEKYDTDFYILDKYPLAVRPFYTMPDPR K E K D K Y 0 0 0 3 0 0 1 0 0 1 1 2 0 1 0 0 1 0 2 0 0 0 12 1 1548.7348 D3DP78;A0A140VJW5;P14868;Q53T60 D3DP78 349 360 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.0050806 83.045 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5026200 5026200 0 5026200 5026200 0 0 0 0 2745 504 2814 9976 15098 15098 1 EKYEITEQR RKPRHQEGEIFDTEKEKYEITEQRKIDQKA IFDTEKEKYEITEQRKIDQKAVDSQILPKI K E K Q R K 0 1 0 0 0 1 3 0 0 1 0 1 0 0 0 0 1 0 1 0 0 0 9 1 1194.5881 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3 Q8TBK5 238 246 RPL6 60S ribosomal protein L6 yes no 2;3 1.4237E-29 251.98 6 2 0.6774 0.92123 4.9886 8 Median 0.71062 0.93732 5.6733 6 0 Median 0.51211 0.89368 2.068 2 0 Median 1538900000 907170000 631700000 1287900000 744030000 543830000 251010000 163140000 87870000 2746 277 2815 9977;9978;9979;9980;9981;9982;9983;9984 15099;15100;15101;15102;15103;15104;15105;15106;15107;15108;15109;15110;15111;15112 15104 14 EKYEITEQRK RKPRHQEGEIFDTEKEKYEITEQRKIDQKA FDTEKEKYEITEQRKIDQKAVDSQILPKIK K E K R K I 0 1 0 0 0 1 3 0 0 1 0 2 0 0 0 0 1 0 1 0 0 0 10 2 1322.683 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3 Q8TBK5 238 247 RPL6 60S ribosomal protein L6 yes no 2;3 6.5708E-33 230.24 8 0.7062 0.87174 15.47 7 Median 0.7062 0.87174 15.47 7 0 Median NaN NaN NaN 0 0 Median 436320000 261950000 174360000 436320000 261950000 174360000 0 0 0 2747 277 2816 9985;9986;9987;9988;9989;9990;9991;9992 15113;15114;15115;15116;15117;15118;15119;15120;15121;15122;15123;15124;15125 15119 13 ELAAGAFGTK DSVEENMLKIQNKKRELAAGAFGTKKTKC_ QNKKRELAAGAFGTKKTKC___________ R E L T K K 3 0 0 0 0 0 1 2 0 0 1 1 0 1 0 0 1 0 0 0 0 0 10 0 963.50255 Q59GQ7;A0A0C4DGA6;Q14527;A8K5B6 Q59GQ7 979 988 HLTF Helicase-like transcription factor yes no 2 0.031009 41.54 1 0.53138 0.67066 NaN 1 Median 0.53138 0.67066 NaN 1 0 Median NaN NaN NaN 0 0 Median 11487000 8165400 3321700 11487000 8165400 3321700 0 0 0 2748 425 2817 9993 15126 15126 1 ELAAGTESQALVSATPR AGSPELVVLDPPWDKELAAGTESQALVSAT AAGTESQALVSATPREDFRVRCTSKRAVTE K E L P R E 4 1 0 0 0 1 2 1 0 0 2 0 0 0 1 2 2 0 0 1 0 0 17 0 1699.8741 Q53FM2;B2R9C5;Q96IY1;Q5SY74;B4E071 Q53FM2 17 33 C1orf48;NSL1 Kinetochore-associated protein NSL1 homolog yes no 2 3.4351E-24 164.64 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13296000 13296000 0 3447400 3447400 0 9848700 9848700 0 2749 721 2818 9994;9995;9996 15127;15128;15129 15127 3 ELAAQLNEEAK RNEMTAEEKRRAHQKELAAQLNEEAKRRLT AHQKELAAQLNEEAKRRLTEQKGEQQIQKA K E L A K R 3 0 1 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1214.6143 Q9Y5B9 Q9Y5B9 480 490 SUPT16H FACT complex subunit SPT16 yes yes 2 5.906E-58 221.68 4 2 0.80516 1.1432 9.3432 6 Median 0.83871 1.1042 9.9672 4 0 Median 0.75717 1.1958 1.8072 2 0 Median 1013100000 547420000 465650000 660230000 351530000 308700000 352850000 195890000 156950000 2750 1829 2819 9997;9998;9999;10000;10001;10002 15130;15131;15132;15133;15134;15135;15136;15137;15138;15139;15140;15141;15142;15143 15137 14 ELAAQLNEEAKR RNEMTAEEKRRAHQKELAAQLNEEAKRRLT HQKELAAQLNEEAKRRLTEQKGEQQIQKAR K E L K R R 3 1 1 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1370.7154 Q9Y5B9 Q9Y5B9 480 491 SUPT16H FACT complex subunit SPT16 yes yes 2;3 4.9926E-05 92.239 2 3 0.47279 0.69752 0.96815 2 Median 0.50349 0.70231 NaN 1 0 Median 0.44396 0.69276 NaN 1 0 Median 17384000 14605000 2778900 2300800 1432200 868520 15083000 13173000 1910400 2751 1829 2820 10003;10004;10005;10006;10007 15144;15145;15146;15147;15148 15147 5 ELAEAMGAQHTAESECEQLVK QLGEAHQAETEVLRRELAEAMGAQHTAESE GAQHTAESECEQLVKEVAAWRERYEDSQQE R E L V K E 4 0 0 0 1 2 5 1 1 0 2 1 1 0 0 1 1 0 0 1 0 0 21 0 2330.0519 A8K394 A8K394 788 808 yes yes 3 1.4241E-06 105.79 3 2 0.66048 0.83455 40.973 3 Median 0.67617 0.86951 5.8031 2 0 Median 0.28254 0.42916 NaN 1 0 Median 21039000 15707000 5331900 4172900 1749200 2423800 16866000 13958000 2908200 2752 590 2821;2822 10008;10009;10010;10011;10012 15149;15150;15151;15152;15153;15154 15149 202 6 ELAEDGYSGVEVR ADGIFKAELNEFLTRELAEDGYSGVEVRVT TRELAEDGYSGVEVRVTPTRTEIIILATRT R E L V R V 1 1 0 1 0 0 3 2 0 0 1 0 0 0 0 1 0 0 1 2 0 0 13 0 1422.6627 P23396;Q53G83;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;H0YEU2;H0YF32;E9PQ96;E9PJH4;E9PK82 P23396 28 40 RPS3 40S ribosomal protein S3 yes no 2 2.5566E-45 190.86 4 2 0.77013 1.0481 54.843 5 Median 0.74565 1.0328 2.0532 3 0 Median 1.7194 2.7988 2.6518 2 0 Median 511020000 265150000 245870000 365380000 212790000 152590000 145640000 52363000 93273000 2753 1293 2823 10013;10014;10015;10016;10017;10018 15155;15156;15157;15158;15159;15160;15161;15162;15163;15164;15165;15166;15167 15162 13 ELAELVK MHNKAAPPQIPDTRRELAELVKRKQELAET PQIPDTRRELAELVKRKQELAETLANLERQ R E L V K R 1 0 0 0 0 0 2 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 7 0 800.46437 Q9HAF1 Q9HAF1 18 24 MEAF6 Chromatin modification-related protein MEAF6 yes yes 2 0.0020398 143.37 3 0.76531 0.97216 3.175 2 Median 0.76531 0.97216 3.175 2 0 Median NaN NaN NaN 0 0 Median 25101000 17782000 7319000 25101000 17782000 7319000 0 0 0 2754 1748 2824 10019;10020;10021 15168;15169;15170 15169 3 ELAEQELEK ARRRGKAEEQAVRQRELAEQELEKQRQLAE QAVRQRELAEQELEKQRQLAEGTAQQRLAA R E L E K Q 1 0 0 0 0 1 4 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1087.5397 Q15149 Q15149 1825 1833 PLEC Plectin yes yes 2 0.0069101 68.383 1 1.0125 1.3019 NaN 1 Median 1.0125 1.3019 NaN 1 0 Median NaN NaN NaN 0 0 Median 4524000 2149400 2374700 4524000 2149400 2374700 0 0 0 2755 1507 2825 10022 15171 15171 1 ELAEQGEPDSSTLSLAEK AHQKALAKDQTNEGKELAEQGEPDSSTLSL EQGEPDSSTLSLAEKLALFNKLSQPVSKAI K E L E K L 2 0 0 1 0 1 4 1 0 0 3 1 0 0 1 3 1 0 0 0 0 0 18 0 1902.9058 O95425 O95425 801 818 SVIL Supervillin yes yes 2 0.023816 39.581 1 0.69101 0.8758 NaN 1 Median 0.69101 0.8758 NaN 1 0 Median NaN NaN NaN 0 0 Median 6086700 3635700 2451000 6086700 3635700 2451000 0 0 0 2756 1220 2826 10023 15172 15172 0 ELAEQLGLSTGEK TTRCPYKDTLGPMQKELAEQLGLSTGEKEK QKELAEQLGLSTGEKEKLPGELEPVQATQN K E L E K E 1 0 0 0 0 1 3 2 0 0 3 1 0 0 0 1 1 0 0 0 0 0 13 0 1373.7038 Q6IAM0;O75821;K7ER90;K7EL20;A8K5K5;B7Z1G0 Q6IAM0 181 193 EIF3G Eukaryotic translation initiation factor 3 subunit G yes no 2 0.00041067 103.46 1 1 0.41315 0.54385 NaN 1 Median 0.41315 0.54385 NaN 1 0 Median NaN NaN NaN 0 0 Median 4711400 1878400 2833000 2987300 1878400 1108800 1724100 0 1724100 2757 1209 2827 10024;10025 15173;15174 15173 2 ELAEQTLNNIK FLPNAPKALIVEPSRELAEQTLNNIKQFKK EPSRELAEQTLNNIKQFKKYIDNPKLRELL R E L I K Q 1 0 2 0 0 1 2 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 11 0 1271.6721 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 216 226 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.0026257 62.104 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2758 378 2828 10026;10027 15175;15176 15175 2 ELAFQISK PVNGQVTVLVMCHTRELAFQISKEYERFSK LVMCHTRELAFQISKEYERFSKYMPSVKVS R E L S K E 1 0 0 0 0 1 1 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 8 0 934.51238 A0A024RCM3;Q13838;Q5STU3;F6WLT2;A0A0G2JJZ9;F6S4E6;A0A0A0MT12;F6TRA5;Q59G92;A0A140T9X3;A0A140T996;A0A140T9L4;A0A140T973;A0A140T9K1;B4DIJ6;F6QYI9;A0A0G2JJL7;F6R6M7;Q7KYK3;A0A140T9K2;A0A140T9N3;O00148;B4DX78;K7EQN7;A0A024R7H0;K7EPJ3;A0A0D9SEM9;K7EN69 O00148 123 130 hCG_2005638;DDX39B;BAT1;DDX39A;DDX39 Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A no no 2 0.00024169 97.093 4 2 0.95308 1.2488 107.03 4 Median 0.38871 0.48037 9.5983 2 0 Median 2.1829 3.0592 1.1958 2 0 Median 86529000 66655000 19874000 76619000 63332000 13287000 9909600 3323600 6586100 2759 1164;296 2829 10028;10029;10030;10031;10032;10033 15177;15178;15179;15180;15181;15182;15183;15184;15185 15180 9 ELAIQIDEVLSHFTK LKKSQVGAIIITPTRELAIQIDEVLSHFTK ELAIQIDEVLSHFTKHFPEFSQILWIGGRN R E L T K H 1 0 0 1 0 1 2 0 1 2 2 1 0 1 0 1 1 0 0 1 0 0 15 0 1741.9251 B4DVE4;F5H5U2;A0A024RBS0;Q8NHQ9;Q8TEC9;E7EX41 B4DVE4 93 107 DDX55 ATP-dependent RNA helicase DDX55 yes no 3 0.0018088 72.615 2 0.99329 1.27 20.904 2 Median 0.99329 1.27 20.904 2 0 Median NaN NaN NaN 0 0 Median 6109800 3952800 2157000 6109800 3952800 2157000 0 0 0 2760 280 2830 10034;10035 15186;15187;15188;15189 15188 4 ELALALQEALEPAVR AGRRRRAPPGGCEERELALALQEALEPAVR ELALALQEALEPAVRLGRYPRAQLEVSALL R E L V R L 4 1 0 0 0 1 3 0 0 0 4 0 0 0 1 0 0 0 0 1 0 0 15 0 1621.9039 Q5RKV6 Q5RKV6 121 135 EXOSC6 Exosome complex component MTR3 yes yes 2 1.5305E-36 179.35 4 2 0.63367 0.85478 24.22 6 Median 0.64408 0.88186 4.2448 4 0 Median 0.37369 0.55354 6.9934 2 0 Median 59438000 38555000 20882000 30228000 17713000 12515000 29210000 20842000 8367600 2761 1562 2831 10036;10037;10038;10039;10040;10041 15190;15191;15192;15193;15194;15195;15196;15197;15198 15194 9 ELALQITK EEGEGPIAVIMTPTRELALQITKECKKFSK VIMTPTRELALQITKECKKFSKTLGLRVVC R E L T K E 1 0 0 0 0 1 1 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 8 0 914.54368 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6;D6RJA6 A8K6X3 456 463 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.037442 47.657 1 1.1026 1.5012 NaN 1 Median NaN NaN NaN 0 0 Median 1.1026 1.5012 NaN 1 0 Median 3442800 1675300 1767500 0 0 0 3442800 1675300 1767500 2762 424 2832 10042 15199 15199 1 ELALQTLK SAQTGARALILSPTRELALQTLKFTKELGK LILSPTRELALQTLKFTKELGKFTGLKTAL R E L L K F 1 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 8 0 914.54368 Q8TDD1;F8VRX4 Q8TDD1 177 184 DDX54 ATP-dependent RNA helicase DDX54 yes no 2 0.0031213 104.45 3 3 0.78743 0.98402 7.1943 5 Median 0.8194 1.0177 2.5494 3 0 Median 0.59813 0.90363 6.3623 2 0 Median 84509000 46503000 38007000 50253000 26919000 23334000 34256000 19584000 14673000 2763 1658 2833 10043;10044;10045;10046;10047;10048 15200;15201;15202;15203;15204;15205;15206;15207 15203 8 ELALSALLK NRLGELLGHPSFQVKELALSALLKFVQLEG PSFQVKELALSALLKFVQLEGAHPLEKSKW K E L L K F 2 0 0 0 0 0 1 0 0 0 4 1 0 0 0 1 0 0 0 0 0 0 9 0 956.59063 Q9BVI4 Q9BVI4 116 124 NOC4L Nucleolar complex protein 4 homolog yes yes 2 0.0037659 66.351 2 1 0.95651 1.2084 NaN 1 Median 0.95651 1.2084 NaN 1 0 Median NaN NaN NaN 0 0 Median 7372800 3463600 3909100 7372800 3463600 3909100 0 0 0 2764 1718 2834 10049;10050;10051 15208;15209;15210 15210 3 ELAMQTFGVLK MPRNGTGVLILSPTRELAMQTFGVLKELMT SPTRELAMQTFGVLKELMTHHVHTYGLIMG R E L L K E 1 0 0 0 0 1 1 1 0 0 2 1 1 1 0 0 1 0 0 1 0 0 11 0 1235.6584 Q4ZG72;A0A024RAH8;Q9NVP1 Q4ZG72 138 148 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 7.6869E-06 100.84 3 0.71148 1.1481 16.663 3 Plateau NaN NaN NaN 0 0 Median 0.71148 1.1481 16.663 3 0 Plateau 86303000 55089000 31214000 0 0 0 86303000 55089000 31214000 2765 242 2835 10052;10053;10054 15211;15212;15213;15214;15215;15216 15215 96 5 ELAPAVSVLQLFCSSPK EAASAIVNLPGCSAKELAPAVSVLQLFCSS APAVSVLQLFCSSPKAALRYAAVRTLNKVA K E L P K A 2 0 0 0 1 1 1 0 0 0 3 1 0 1 2 3 0 0 0 2 0 0 17 0 1844.9706 Q9Y678;B3KW21;Q8WUI6;Q9NUP3;B3KND4;Q9H9B7;A0A140VK12;Q9UBF2 Q9Y678 284 300 COPG1;COPG;COPG2 Coatomer subunit gamma-1;Coatomer subunit gamma;Coatomer subunit gamma-2 yes no 2 1.3325E-08 116.63 1 0.9759 1.279 NaN 1 Median 0.9759 1.279 NaN 1 0 Median NaN NaN NaN 0 0 Median 1921200 1386900 534300 1921200 1386900 534300 0 0 0 2766 1832 2836 10055 15217 15217 1 ELAPYDENWFYTR KVPEWVDTVKLAKHKELAPYDENWFYTRAA HKELAPYDENWFYTRAASTARHLYLRGGAG K E L T R A 1 1 1 1 0 0 2 0 0 0 1 0 0 1 1 0 1 1 2 0 0 0 13 0 1702.7627 B0ZBD0;Q8WVX7;P39019;M0R2L9;M0QXK4;M0QYF7;M0R140 B0ZBD0 44 56 RPS19 40S ribosomal protein S19 yes no 2 0.0025699 51.998 2 0.71023 1.007 1.1881 2 Median NaN NaN NaN 0 0 Median 0.71023 1.007 1.1881 2 0 Median 17773000 9628700 8144300 0 0 0 17773000 9628700 8144300 2767 669 2837 10056;10057 15218;15219;15220 15219 3 ELAQQIEEETIK ESDQGPYAIILAPTRELAQQIEEETIKFGK PTRELAQQIEEETIKFGKPLGIRTVAVIGG R E L I K F 1 0 0 0 0 2 4 0 0 2 1 1 0 0 0 0 1 0 0 0 0 0 12 0 1429.73 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56 B3KY11 459 470 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.0005309 128.51 3 0.53418 0.6764 14.031 3 Median 0.53418 0.6764 14.031 3 0 Median NaN NaN NaN 0 0 Median 26816000 18220000 8595800 26816000 18220000 8595800 0 0 0 2768 45 2838 10058;10059;10060 15221;15222;15223;15224 15221 4 ELAQQIQK LDLKATQALVLAPTRELAQQIQKVVMALGD LVLAPTRELAQQIQKVVMALGDYMGASCHA R E L Q K V 1 0 0 0 0 3 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 8 0 956.5291 A8K7F6;P60842;A8K088;J3KT12;J3KTB5;Q59F68;J3QR64;J3QL43;J3QLN6;J3QKZ9;B4E047;J3KS25;E7EQG2;Q14240;J3KSN7;D3DSD6 A8K7F6 111 118 EIF4A1;EIF4A2;hCG_1793424 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 2 6.6714E-05 132.72 1 0.33357 0.40712 NaN 1 Median 0.33357 0.40712 NaN 1 0 Median NaN NaN NaN 0 0 Median 30941000 23183000 7757900 30941000 23183000 7757900 0 0 0 2769 634 2839 10061 15225;15226 15225 2 ELAQQVQQVAAEYCR ERGDGPICLVLAPTRELAQQVQQVAAEYCR ELAQQVQQVAAEYCRACRLKSTCIYGGAPK R E L C R A 3 1 0 0 1 4 2 0 0 0 1 0 0 0 0 0 0 0 1 2 0 0 15 0 1791.8574 B4DN41;J3KTA4;B5BUE6;P17844;B4DNG2;Q7Z2V5;Q59E92;J3KRZ1;J3QRQ7 B4DN41 167 181 DDX5;DKFZp686J01190 Probable ATP-dependent RNA helicase DDX5 yes no 2 9.6588E-88 265.53 5 2 0.43008 0.57677 77.538 5 Median 0.39793 0.53407 5.0067 3 0 Median 1.5483 2.2384 6.2103 2 0 Median 121160000 80427000 40728000 93703000 69044000 24658000 27452000 11382000 16070000 2770 833 2840 10062;10063;10064;10065;10066;10067;10068 15227;15228;15229;15230;15231;15232;15233;15234;15235;15236;15237;15238;15239 15228 13 ELAQQVQQVADDYGK ERGDGPICLVLAPTRELAQQVQQVADDYGK ELAQQVQQVADDYGKCSRLKSTCIYGGAPK R E L G K C 2 0 0 2 0 4 1 1 0 0 1 1 0 0 0 0 0 0 1 2 0 0 15 0 1690.8162 Q59F66;Q92841;B4DZQ7 Q59F66 257 271 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 1.5172E-118 285.83 4 2 0.61067 0.76692 60.509 6 Median 0.6014 0.75665 3.3272 4 0 Median 1.5868 2.4147 5.7447 2 0 Median 92278000 49709000 42569000 55778000 34595000 21183000 36500000 15114000 21386000 2771 1554 2841 10069;10070;10071;10072;10073;10074 15240;15241;15242;15243;15244;15245;15246;15247;15248;15249 15240 10 ELASCNPVVLEESK FWPGTFTQEVMVRIKELASCNPVVLEESKA KELASCNPVVLEESKALVRCNMKMELEQAN K E L S K A 1 0 1 0 1 0 3 0 0 0 2 1 0 0 1 2 0 0 0 2 0 0 14 0 1573.7658 Q9Y232 Q9Y232 539 552 CDYL Chromodomain Y-like protein yes yes 2 3.8477E-18 154.67 4 2 0.90144 1.1129 15.551 6 Median 0.88349 1.0845 5.5254 4 0 Median 0.94702 1.4312 5.8312 2 0 Median 110280000 58076000 52203000 80529000 43065000 37464000 29749000 15010000 14739000 2772 1802 2842 10075;10076;10077;10078;10079;10080 15250;15251;15252;15253;15254;15255;15256;15257;15258;15259;15260;15261;15262;15263 15254 14 ELASGEYFLK YTPFPPPQPESQIDKELASGEYFLKANQKK SQIDKELASGEYFLKANQKKRQKMEAIKAK K E L L K A 1 0 0 0 0 0 2 1 0 0 2 1 0 1 0 1 0 0 1 0 0 0 10 0 1155.5812 Q13601 Q13601 281 290 KRR1 KRR1 small subunit processome component homolog yes yes 2 5.9833E-09 134.77 5 2 0.8525 1.1402 8.3782 5 Median 0.90838 1.1344 11.548 3 0 Median 0.76755 1.1702 3.6698 2 0 Median 132360000 66032000 66329000 87919000 39001000 48918000 44442000 27031000 17411000 2773 1473 2843 10081;10082;10083;10084;10085;10086;10087 15264;15265;15266;15267;15268;15269;15270;15271;15272;15273 15271 10 ELAVQIYEEARK RRKQYPISLVLAPTRELAVQIYEEARKFSY PTRELAVQIYEEARKFSYRSRVRPCVVYGG R E L R K F 2 1 0 0 0 1 3 0 0 1 1 1 0 0 0 0 0 0 1 1 0 0 12 1 1447.7671 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;A0A024R9A4;O15523;B4DLU5;B4E010 A0A0D9SFB3 277 288 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 0.019609 58.37 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2774 432 2844 10088 15274 15274 1 ELAYQTFEVLR TSTDGLGVLIISPTRELAYQTFEVLRKVGK SPTRELAYQTFEVLRKVGKNHDFSAGLIIG R E L L R K 1 1 0 0 0 1 2 0 0 0 2 0 0 1 0 0 1 0 1 1 0 0 11 0 1367.7085 Q13206;Q86VR6;E9PIF2;Q59EC7 Q13206 152 162 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 2 0.0033623 86.882 1 2 0.58602 0.79817 22.856 3 Median 0.83462 1.1706 NaN 1 0 Median 0.5722 0.78836 1.7497 2 0 Median 13077000 7747400 5329500 2177700 1159700 1018100 10899000 6587800 4311400 2775 1466 2845 10089;10090;10091 15275;15276;15277;15278 15278 4 ELCHTQSSHASLR ESEEALQKRLDEVSRELCHTQSSHASLRAD SRELCHTQSSHASLRADAEKAQEQQQQMAE R E L L R A 1 1 0 0 1 1 1 0 2 0 2 0 0 0 0 3 1 0 0 0 0 0 13 0 1524.7103 A0A0A0MRV0;A7BI36;Q9P2E9;F8W7S5;A1A5C4;A0A087WVV2;A1A5C5 A0A0A0MRV0 890 902 RRBP1 Ribosome-binding protein 1 yes no 3 0.0016589 79.744 1 1.2847 1.7622 NaN 1 Median 1.2847 1.7622 NaN 1 0 Median NaN NaN NaN 0 0 Median 1579000 662980 916060 1579000 662980 916060 0 0 0 2776 390 2846 10092 15279 15279 1 ELCLIR TVWDYVGKLKSSVSKELCLIRFHPATEEEE GKLKSSVSKELCLIRFHPATEEEEVAYISL K E L I R F 0 1 0 0 1 0 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 6 0 802.43711 Q9BTC0 Q9BTC0 1116 1121 DIDO1 Death-inducer obliterator 1 yes yes 2 0.034616 84.609 2 0.86769 1.1899 2.2446 2 Median 0.86769 1.1899 2.2446 2 0 Median NaN NaN NaN 0 0 Median 13945000 7004700 6940500 13945000 7004700 6940500 0 0 0 2777 1713 2847 10093;10094 15280;15281 15280 2 ELCQGLGQPGSVLR ELQISNNRLEDAGVRELCQGLGQPGSVLRV RELCQGLGQPGSVLRVLWLADCDVSDSSCS R E L L R V 0 1 0 0 1 2 1 3 0 0 3 0 0 0 1 1 0 0 0 1 0 0 14 0 1512.7719 H0YCR7;A0A024RC87;A0A140VJT8;P13489 H0YCR7 154 167 RNH1 Ribonuclease inhibitor yes no 2 0.044423 34.378 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1730400 1730400 0 1730400 1730400 0 0 0 0 2778 290 2848 10095 15282 15282 1 ELDALDANDELTPLGR PPPLDAVIEAEHTLRELDALDANDELTPLG LDALDANDELTPLGRILAKLPIEPRFGKMM R E L G R I 2 1 1 3 0 0 2 1 0 0 4 0 0 0 1 0 1 0 0 0 0 0 16 0 1740.853 Q08211;B3KU66 Q08211 838 853 DHX9 ATP-dependent RNA helicase A yes no 2 1.0223E-152 276.47 4 2 0.6606 0.93111 6.6427 6 Median 0.67325 0.92259 5.3075 4 0 Median 0.60747 0.99265 8.5767 2 0 Median 435460000 277480000 157990000 246910000 149440000 97468000 188550000 128030000 60517000 2779 1448 2849 10096;10097;10098;10099;10100;10101 15283;15284;15285;15286;15287;15288;15289;15290;15291;15292;15293;15294;15295 15292 13 ELDDATEANEGLSR EEATRANASRRKLQRELDDATEANEGLSRE RELDDATEANEGLSREVSTLKNRLRRGGPI R E L S R E 2 1 1 2 0 0 3 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 14 0 1518.6798 P35580 P35580 1906 1919 MYH10 Myosin-10 yes yes 2 1.6308E-05 120.55 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3637000 2506000 1131000 2506000 2506000 0 1131000 0 1131000 2780 1320 2850 10102;10103;10104 15296;15297;15298 15296 3 ELDEHELDYDEEVPEEPAPAVQEDEAEK DRTSDLRDEASSVTRELDEHELDYDEEVPE PEEPAPAVQEDEAEKAGAEDDEEKGEGTPR R E L E K A 3 0 0 4 0 1 10 0 1 0 2 1 0 0 3 0 0 0 1 2 0 0 28 0 3253.3946 E7ERS3;B4DTK7;Q86VM9 E7ERS3 122 149 ZC3H18 Zinc finger CCCH domain-containing protein 18 yes no 3 2.3929E-12 97.388 3 0.58121 0.73325 12.268 3 Median 0.58121 0.73325 12.268 3 0 Median NaN NaN NaN 0 0 Median 13101000 6824600 6276600 13101000 6824600 6276600 0 0 0 2781 859 2851 10105;10106;10107 15299;15300;15301;15302;15303;15304;15305 15299 7 ELDELLNCLHPQGIR PKQGQNLWFLCDSQKELDELLNCLHPQGIR ELDELLNCLHPQGIRESQLKERLEKRYQDI K E L I R E 0 1 1 1 1 1 2 1 1 1 4 0 0 0 1 0 0 0 0 0 0 0 15 0 1805.9094 Q9UIG0 Q9UIG0 999 1013 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2;3 1.5501E-62 216.91 4 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35074000 0 35074000 25973000 0 25973000 9100600 0 9100600 2782 1786 2852 10108;10109;10110;10111;10112 15306;15307;15308;15309;15310;15311 15307 6 ELDLSELDDPDSAYLQEAR LLALYVAEIRRLQEKELDLSELDDPDSAYL SELDDPDSAYLQEARLKRKLIRLFGRLCEL K E L A R L 2 1 0 4 0 1 3 0 0 0 4 0 0 0 1 2 0 0 1 0 0 0 19 0 2177.9964 Q59FG7;Q53F85;B2R7M0;A8K822;A0A024RCS3;B4E1C1;Q9UER7 Q59FG7 140 158 DAXX Death domain-associated protein 6 yes no 2 1.2335E-07 129.77 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 653980 653980 0 653980 653980 0 0 0 0 2783 302 2853 10113;10114 15312;15313 15312 2 ELDLSGQGFSEK EGSPFLTQKWCHTLRELDLSGQGFSEKDLE TLRELDLSGQGFSEKDLEQALAAFLSTPGG R E L E K D 0 0 0 1 0 1 2 2 0 0 2 1 0 1 0 2 0 0 0 0 0 0 12 0 1308.6198 Q71RB6;Q8N531 Q71RB6 205 216 FBXL6 F-box/LRR-repeat protein 6 yes no 2 0.043876 32.523 1 0.67638 0.98898 NaN 1 Median NaN NaN NaN 0 0 Median 0.67638 0.98898 NaN 1 0 Median 5552400 3090200 2462200 0 0 0 5552400 3090200 2462200 2784 1606 2854 10115 15314 15314 1 ELDSQLNEPR SLTWTLCEALWGHLKELDSQLNEPREYIQI WGHLKELDSQLNEPREYIQILERRRAFSRW K E L P R E 0 1 1 1 0 1 2 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 10 0 1199.5782 P52948;H7C3P6 P52948 1285 1294 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.030846 48.091 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1258200 1258200 0 0 0 0 1258200 1258200 0 2785 1367 2855 10116;10117 15315;15316 15315 2 ELEAENYHDIK AAYEERVQAVVAVARELEAENYHDIKRITA AVARELEAENYHDIKRITARKDNVIRLWEY R E L I K R 1 0 1 1 0 0 3 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 11 0 1359.6307 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;F8W6C1 B2ZZ89 487 497 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 7.8548E-12 140.83 4 0.58306 0.73931 21.582 3 Median 0.58306 0.73931 21.582 3 0 Median NaN NaN NaN 0 0 Median 25259000 15272000 9987600 25259000 15272000 9987600 0 0 0 2786 346 2856 10118;10119;10120;10121 15317;15318;15319;15320 15320 3 ELEANVLATAPDK QRLIEQEEYLNVQVKELEANVLATAPDKKK VKELEANVLATAPDKKKQKLLEENVSAFKT K E L D K K 3 0 1 1 0 0 2 0 0 0 2 1 0 0 1 0 1 0 0 1 0 0 13 0 1369.7089 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 841 853 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 8.2563E-26 189.17 3 2 0.68295 0.97897 3.8562 4 Median 0.73388 0.95674 0.087013 2 0 Median 0.63568 1.0183 2.4013 2 0 Median 359540000 220420000 139120000 243500000 152540000 90966000 116040000 67881000 48158000 2787 1760 2857 10122;10123;10124;10125;10126 15321;15322;15323;15324;15325;15326;15327;15328;15329;15330;15331;15332;15333;15334 15321 14 ELEANVLATAPDKK QRLIEQEEYLNVQVKELEANVLATAPDKKK KELEANVLATAPDKKKQKLLEENVSAFKTE K E L K K K 3 0 1 1 0 0 2 0 0 0 2 2 0 0 1 0 1 0 0 1 0 0 14 1 1497.8039 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 841 854 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 0.00047293 121.68 4 2 0.72906 0.8847 7.2991 4 Linear 0.70254 0.86638 2.1023 2 0 Median 0.59488 0.94686 8.7461 2 0 Median 81117000 42801000 38317000 51164000 25411000 25753000 29953000 17389000 12564000 2788 1760 2858 10127;10128;10129;10130;10131;10132 15335;15336;15337;15338;15339;15340;15341;15342 15339 8 ELEASEELDTICPK LYVSGELIGGLDIIKELEASEELDTICPKA KELEASEELDTICPKAPKLEERLKVLTNKA K E L P K A 1 0 0 1 1 0 4 0 0 1 2 1 0 0 1 1 1 0 0 0 0 0 14 0 1632.7553 A0A140VJK1;O76003 A0A140VJK1 218 231 GLRX3 Glutaredoxin-3 yes no 2 2.286E-05 129 2 0.57747 0.72828 NaN 1 Median 0.57747 0.72828 NaN 1 0 Median NaN NaN NaN 0 0 Median 4502300 3701500 800810 4502300 3701500 800810 0 0 0 2789 496 2859 10133;10134 15343;15344 15343 2 ELEDATETADAMNR EEAQRANASRRKLQRELEDATETADAMNRE RELEDATETADAMNREVSSLKNKLRRGDLP R E L N R E 3 1 1 2 0 0 3 0 0 0 1 0 1 0 0 0 2 0 0 0 0 0 14 0 1564.6675 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1899 1912 MYH9;FLJ00279 Myosin-9 no no 2 2.8686E-14 150.09 3 2 2.1059 3.0161 81.959 4 Median 1.0077 1.3683 26.495 2 0 Median 3.781 5.5191 0.16925 2 0 Median 48805000 17526000 31279000 21328000 10351000 10977000 27477000 7175100 20302000 2790 61;490 2860;2861 10135;10136;10137;10138;10139 15345;15346;15347;15348;15349;15350;15351;15352;15353;15354;15355 15348 19 11 ELEDLEGYQNTIVAGSLITK YYNSQTKESRWAKPKELEDLEGYQNTIVAG EGYQNTIVAGSLITKSNLHAMIKAEESSKQ K E L T K S 1 0 1 1 0 1 3 2 0 2 3 1 0 0 0 1 2 0 1 1 0 0 20 0 2192.1212 B4DPY2;O75400;H7C2N3;Q05C41;F5H578 B4DPY2 134 153 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 2 1.4294E-07 79.771 3 0.54051 0.68707 12.369 2 Median 0.54051 0.68707 12.369 2 0 Median NaN NaN NaN 0 0 Median 5191600 3150900 2040700 5191600 3150900 2040700 0 0 0 2791 847 2862 10140;10141;10142 15356;15357;15358;15359;15360 15358 5 ELEDLEVDGQK HAKEILHCLKNKYFKELEDLEVDGQKVEVP KYFKELEDLEVDGQKVEVPQPLSWYPEELA K E L Q K V 0 0 0 2 0 1 3 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 11 0 1273.6038 Q08J23;A0A140T9Y7 Q08J23 101 111 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 2 1.2863E-34 229.55 1 1 0.53821 0.68423 NaN 1 Median 0.53821 0.68423 NaN 1 0 Median NaN NaN NaN 0 0 Median 9631000 3577900 6053000 5736900 3577900 2159000 3894100 0 3894100 2792 1451 2863 10143;10144 15361;15362 15361 2 ELEDSPQENVSVTEIIKPCDDPK KVDPEDTNLNQDSAKELEDSPQENVSVTEI NVSVTEIIKPCDDPKSEAKSVPKPKGKKTK K E L P K S 0 0 1 3 1 1 4 0 0 2 1 2 0 0 3 2 1 0 0 2 0 0 23 1 2641.2429 Q5F1R6 Q5F1R6 426 448 DNAJC21 DnaJ homolog subfamily C member 21 yes yes 3 0.010768 23.296 1 0.94627 1.1742 NaN 1 Median 0.94627 1.1742 NaN 1 0 Median NaN NaN NaN 0 0 Median 12016000 4618600 7397700 12016000 4618600 7397700 0 0 0 2793 1556 2864 10145 15363;15364 15363 2 ELEEIVQPIISK SHQDADIEDFKAKKKELEEIVQPIISKLYG KKKELEEIVQPIISKLYGSAGPPPTGEEDT K E L S K L 0 0 0 0 0 1 3 0 0 3 1 1 0 0 1 1 0 0 0 1 0 0 12 0 1396.7813 V9HWB4;P11021 V9HWB4 622 633 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 2 0.00075031 125.68 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9091800 9091800 0 9091800 9091800 0 0 0 0 2794 1252 2865 10146;10147;10148 15365;15366;15367 15366 3 ELEELRDK ALLNEKQAASPLEPKELEELRDKNESLTMR ASPLEPKELEELRDKNESLTMRLHETLKQC K E L D K N 0 1 0 1 0 0 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 1 1030.5295 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 277 284 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 2.6781E-07 158.56 4 2 0.51416 0.75744 29.248 4 Median 0.72211 0.95289 4.0343 2 0 Median 0.35022 0.58007 9.2993 2 0 Median 106760000 79387000 27369000 67667000 50624000 17043000 39089000 28763000 10326000 2795 148;1499;590 2866 10149;10150;10151;10152;10153;10154 15368;15369;15370;15371;15372;15373;15374 15374 7 ELEELRQTVK QELAKLRGLEAAQIKELEELRQTVKQLKEQ AAQIKELEELRQTVKQLKEQLAKKEKEHAS K E L V K Q 0 1 0 0 0 1 3 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 10 1 1243.6772 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q7Z757;Q4LE64;Q14980 Q4LE64 1079 1088 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.0006199 128.6 4 0.76051 0.98654 24.674 4 Median 0.76051 0.98654 24.674 4 0 Median NaN NaN NaN 0 0 Median 17721000 10210000 7511500 17721000 10210000 7511500 0 0 0 2796 148;1499 2867 10155;10156;10157;10158 15375;15376;15377;15378 15376 4 ELEELSLEAQGIK KEKKKQDFDEDDILKELEELSLEAQGIKAD LKELEELSLEAQGIKADRETVAVKPTENNE K E L I K A 1 0 0 0 0 1 4 1 0 1 3 1 0 0 0 1 0 0 0 0 0 0 13 0 1457.7613 Q8N5A0;A0A087WUT6;O60841;A0JLR8;Q05CQ1 Q8N5A0 61 73 EIF5B Eukaryotic translation initiation factor 5B yes no 2 0.027793 87.568 1 0.68502 0.86053 NaN 1 Median 0.68502 0.86053 NaN 1 0 Median NaN NaN NaN 0 0 Median 4390700 1847600 2543100 4390700 1847600 2543100 0 0 0 2797 345 2868 10159 15379 15379 0 ELEEVSPETPVVPATTQR RGPLPTEEQRVYRRKELEEVSPETPVVPAT EVSPETPVVPATTQRTLARPGPEPAPATDE K E L Q R T 1 1 0 0 0 1 4 0 0 0 1 0 0 0 3 1 3 0 0 3 0 0 18 0 1981.0004 Q15149 Q15149 144 161 PLEC Plectin yes yes 2 0.0005764 43.382 1 1.2425 1.6768 NaN 1 Median 1.2425 1.6768 NaN 1 0 Median NaN NaN NaN 0 0 Median 4014000 1844400 2169600 4014000 1844400 2169600 0 0 0 2798 1507 2869 10160 15380 15380 1 ELEFYLR PGQCGRADGYVLEGKELEFYLRKIKARKGK DGYVLEGKELEFYLRKIKARKGK_______ K E L L R K 0 1 0 0 0 0 2 0 0 0 2 0 0 1 0 0 0 0 1 0 0 0 7 0 968.49673 Q5JR94;P62241;Q5JR95;Q9BS10 Q5JR94 194 200 RPS8 40S ribosomal protein S8 yes no 2 0.0057691 122.98 7 2 0.62632 0.94443 95.877 2 Median 1.3432 1.8604 NaN 1 0 Median 0.29204 0.47945 NaN 1 0 Median 575770000 376930000 198850000 243500000 125890000 117620000 332270000 251040000 81228000 2799 1399 2870 10161;10162;10163;10164;10165;10166;10167;10168;10169 15381;15382;15383;15384;15385;15386;15387;15388;15389;15390;15391;15392 15387 12 ELEFYLRK PGQCGRADGYVLEGKELEFYLRKIKARKGK GYVLEGKELEFYLRKIKARKGK________ K E L R K I 0 1 0 0 0 0 2 0 0 0 2 1 0 1 0 0 0 0 1 0 0 0 8 1 1096.5917 Q5JR94;P62241;Q5JR95;Q9BS10 Q5JR94 194 201 RPS8 40S ribosomal protein S8 yes no 2;3 0.00032931 139.31 5 2 0.89049 1.1792 45.851 6 Median 0.95599 1.2593 7.9199 4 0 Median 0.30471 0.51591 5.657 2 0 Median 326570000 175210000 151360000 272870000 135360000 137510000 53700000 39851000 13849000 2800 1399 2871 10170;10171;10172;10173;10174;10175;10176 15393;15394;15395;15396;15397;15398;15399;15400;15401;15402;15403;15404;15405;15406 15396 14 ELEGLAGQLQAQVQDNEGLSR EVEQQLQAEAEHLRKELEGLAGQLQAQVQD GQLQAQVQDNEGLSRLNREQEERLLELERA K E L S R L 2 1 1 1 0 4 3 3 0 0 4 0 0 0 0 1 0 0 0 1 0 0 21 0 2254.119 Q08379 Q08379 475 495 GOLGA2 Golgin subfamily A member 2 yes yes 2 2.1707E-38 166.86 4 0.41713 0.551 7.1523 2 Median 0.41713 0.551 7.1523 2 0 Median NaN NaN NaN 0 0 Median 6122700 4538200 1584500 6122700 4538200 1584500 0 0 0 2801 1449 2872 10177;10178;10179;10180 15407;15408;15409;15410;15411 15409 5 ELEGWEPDDDPIEEHK TENEPDLAQCFFCFKELEGWEPDDDPIEEH LEGWEPDDDPIEEHKKHSSGCAFLSVKKQF K E L H K K 0 0 0 3 0 0 5 1 1 1 1 1 0 0 2 0 0 1 0 0 0 0 16 0 1936.8327 B7Z7B9;E7CU85;A0A0B4J1S3;O15392 B7Z7B9 63 78 BIRC5 Baculoviral IAP repeat-containing protein 5 yes no 3 0.035156 17.281 1 0.41421 0.58532 NaN 1 Median NaN NaN NaN 0 0 Median 0.41421 0.58532 NaN 1 0 Median 6107400 4688100 1419300 0 0 0 6107400 4688100 1419300 2802 413 2873 10181 15412;15413 15412 2 ELEIESQTEEQPTTK LHTDDPLTWDYVARRELEIESQTEEQPTTK ELEIESQTEEQPTTKQAKAVEVGRKEERCC R E L T K Q 0 0 0 0 0 2 5 0 0 1 1 1 0 0 1 1 3 0 0 0 0 0 15 0 1760.8316 B3KQ21;Q9NYH9;B3KX32;B4DSL9 B3KQ21 281 295 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 2.8259E-202 340.93 4 2 0.9588 1.2038 1.8198 6 Median 0.96417 1.2003 2.3475 4 0 Median 0.77412 1.2038 0.057844 2 0 Median 121870000 63318000 58552000 66472000 32816000 33656000 55398000 30502000 24896000 2803 768 2874 10182;10183;10184;10185;10186;10187 15414;15415;15416;15417;15418;15419;15420;15421;15422;15423 15414 10 ELEIGQAGSQR QKLRACHTRGLDGIKELEIGQAGSQRAPSA DGIKELEIGQAGSQRAPSAKKPSTGSRYQP K E L Q R A 1 1 0 0 0 2 2 2 0 1 1 0 0 0 0 1 0 0 0 0 0 0 11 0 1186.5942 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1302 1312 NCAPD2 Condensin complex subunit 1 yes no 2 1.7413E-09 163.16 3 2 0.66139 0.90032 12.527 5 Median 0.69452 0.95975 3.7757 3 0 Median 0.46224 0.75281 2.253 2 0 Median 443110000 271690000 171420000 298000000 173820000 124180000 145120000 97873000 47243000 2804 757 2875 10188;10189;10190;10191;10192 15424;15425;15426;15427;15428;15429;15430;15431 15425 8 ELELAHR KDEKSNLKEVLNAVKELELAHRYFSYLSKV KEVLNAVKELELAHRYFSYLSKVGDKMRFD K E L H R Y 1 1 0 0 0 0 2 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 866.46102 A8K6X9;Q6PD62 A8K6X9 785 791 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2 0.0024963 148.28 4 2 0.60993 0.82298 85.972 4 Median 0.6242 0.8361 3.74 3 0 Plateau 3.3469 4.4995 NaN 1 0 Median 82544000 50842000 31701000 72546000 49603000 22943000 9997700 1238900 8758800 2805 629 2876 10193;10194;10195;10196;10197;10198 15432;15433;15434;15435;15436;15437;15438 15436 7 ELELEVINLQK SQLQPIQYQYQDNIKELELEVINLQKEKEE DNIKELELEVINLQKEKEELVLELQTAKKD K E L Q K E 0 0 1 0 0 1 3 0 0 1 3 1 0 0 0 0 0 0 0 1 0 0 11 0 1326.7395 Q59HG1;O95239;Q6PKB2 Q59HG1 566 576 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 1.7507E-25 209.19 4 2 0.80063 1.1112 8.1067 6 Median 0.83355 1.0462 6.2649 4 0 Median 0.7536 1.2012 2.903 2 0 Median 328040000 179130000 148910000 183200000 98310000 84894000 144840000 80822000 64013000 2806 1216 2877 10199;10200;10201;10202;10203;10204 15439;15440;15441;15442;15443;15444;15445;15446;15447;15448;15449 15440 11 ELELQFDLGNLLASDR EQDEAEKLQRITVHKELELQFDLGNLLASD LELQFDLGNLLASDRNPPTGLRCAGPTPEA K E L D R N 1 1 1 2 0 1 2 1 0 0 5 0 0 1 0 1 0 0 0 0 0 0 16 0 1831.9316 Q15050 Q15050 29 44 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 1.138E-24 127.02 2 0.61731 0.83848 10.446 2 Median 0.61731 0.83848 10.446 2 0 Median NaN NaN NaN 0 0 Median 55118000 32419000 22699000 55118000 32419000 22699000 0 0 0 2807 1503 2878 10205;10206 15450;15451 15451 1 ELELQFDLGNLLASDRNPPTGLR EQDEAEKLQRITVHKELELQFDLGNLLASD GNLLASDRNPPTGLRCAGPTPEAELQALAR K E L L R C 1 2 2 2 0 1 2 2 0 0 6 0 0 1 2 1 1 0 0 0 0 0 23 1 2567.3344 Q15050 Q15050 29 51 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 3 4.3827E-48 139.69 6 0.70819 0.95585 12.558 6 Median 0.70819 0.95585 12.558 6 0 Median NaN NaN NaN 0 0 Median 278050000 164270000 113780000 278050000 164270000 113780000 0 0 0 2808 1503 2879 10207;10208;10209;10210;10211;10212 15452;15453;15454;15455;15456;15457;15458;15459;15460;15461;15462;15463 15458 11 ELENGEVEGEDAFLSSK ASQLEEIKLQIKKQKELENGEVEGEDAFLS ENGEVEGEDAFLSSKGRHERTKFRGHGSEA K E L S K G 1 0 1 1 0 0 5 2 0 0 2 1 0 1 0 2 0 0 0 1 0 0 17 0 1851.8374 A0A024RAC0;Q86V48 A0A024RAC0 352 368 LUZP1 Leucine zipper protein 1 yes no 2 3.1465E-05 62.088 2 1.5024 1.9099 NaN 1 Median 1.5024 1.9099 NaN 1 0 Median NaN NaN NaN 0 0 Median 7889700 2773600 5116100 7889700 2773600 5116100 0 0 0 2809 238 2880 10213;10214 15464;15465;15466 15464 3 ELEPFLLR EHGKGREYGYASLHKELEPFLLRRVKKDVE GYASLHKELEPFLLRRVKKDVEKSLPAKVE K E L L R R 0 1 0 0 0 0 2 0 0 0 3 0 0 1 1 0 0 0 0 0 0 0 8 0 1015.5702 O14646 O14646 689 696 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 0.0049439 101.64 3 2 0.63313 0.87568 4.954 3 Median 0.63494 0.83019 NaN 1 0 Median 0.6257 0.89589 3.2268 2 0 Median 26783000 13051000 13732000 11198000 4221300 6976800 15585000 8829600 6755000 2810 1169 2881 10215;10216;10217;10218;10219 15467;15468;15469;15470;15471;15472 15472 6 ELEQVCNPIISGLYQGAGGPGPGGFGAQGPK ANTLAEKDEFEHKRKELEQVCNPIISGLYQ AGGPGPGGFGAQGPKGGSGSGPTIEEVD__ K E L P K G 2 0 1 0 1 3 2 9 0 2 2 1 0 1 4 1 0 0 1 1 0 0 31 0 3054.4869 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DI39;B4DWK5;B4DNT8;B4DFN9;B4DVU9;B4E1S9;B4E388;V9GZ37;B3KTT5;B4E1T6 A8K5I0 598 628 HEL-S-103;HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 3 1.3519E-16 100.79 1 0.93795 1.1925 NaN 1 Median 0.93795 1.1925 NaN 1 0 Median NaN NaN NaN 0 0 Median 5723400 2614300 3109100 5723400 2614300 3109100 0 0 0 2811 439 2882 10220 15473;15474 15474 2 ELESQISELQEDLESER EEEAAQKNMALKKIRELESQISELQEDLES ESQISELQEDLESERASRNKAEKQKRDLGE R E L E R A 0 1 0 1 0 2 6 0 0 1 3 0 0 0 0 3 0 0 0 0 0 0 17 0 2032.9437 A0A024R1N1;P35579;Q86XU5;Q99529;A0A0U4BW16 A0A024R1N1 1108 1124 MYH9 Myosin-9 no no 2 6.0408E-72 239.61 4 2 0.90482 1.2149 61.974 4 Median 0.89669 1.2083 1.0756 3 0 Median 2.6512 4.1731 NaN 1 0 Median 74807000 35261000 39546000 49399000 29722000 19677000 25408000 5538900 19869000 2812 61;490 2883 10221;10222;10223;10224;10225;10226 15475;15476;15477;15478;15479;15480;15481;15482 15476 8 ELESSEDRLDK KKISSELEMLRVKVKELESSEDRLDKTEQS VKVKELESSEDRLDKTEQSLASELEKLKSL K E L D K T 0 1 0 2 0 0 3 0 0 0 2 1 0 0 0 2 0 0 0 0 0 0 11 1 1319.6205 A0A024RAC0;Q86V48;E5RFK8;Q05DE3 A0A024RAC0 164 174 LUZP1 Leucine zipper protein 1 yes no 2 1.6953E-13 188.87 3 1.2935 1.6654 11.828 3 Median 1.2935 1.6654 11.828 3 0 Median NaN NaN NaN 0 0 Median 14508000 6344000 8164500 14508000 6344000 8164500 0 0 0 2813 238 2884 10227;10228;10229 15483;15484;15485;15486 15485 4 ELEVCEDVAVR QHEDLAKKSIPALVRELEVCEDVAVRNNVI ALVRELEVCEDVAVRNNVIIVMCDLCIRYT R E L V R N 1 1 0 1 1 0 3 0 0 0 1 0 0 0 0 0 0 0 0 3 0 0 11 0 1317.6235 P42695;G3V1A9;Q96FA6 P42695 948 958 NCAPD3 Condensin-2 complex subunit D3 yes no 2 3.8455E-05 136.57 2 1 0.59541 0.80237 40.098 3 Median 0.67018 0.89724 15.803 2 0 Median 0.33248 0.4605 NaN 1 0 Median 34541000 22418000 12123000 25027000 14999000 10028000 9514200 7419100 2095100 2814 1338 2885 10230;10231;10232 15487;15488;15489;15490;15491 15487 4 ELEVLLMCNK MLPSGFRKFLVHNVKELEVLLMCNKSYCAE VHNVKELEVLLMCNKSYCAEIAHNVSSKNR K E L N K S 0 0 1 0 1 0 2 0 0 0 3 1 1 0 0 0 0 0 0 1 0 0 10 0 1247.6254 D3YTB1;A0A024R2G7;F8W727;P62910 D3YTB1 84 93 RPL32 60S ribosomal protein L32 yes no 2 7.7031E-13 119.27 3 2 0.47489 0.73669 3.9981 2 Median NaN NaN NaN 0 0 Median 0.47489 0.73669 3.9981 2 0 Median 61026000 36021000 25005000 7430600 0 7430600 53595000 36021000 17574000 2815 85 2886 10233;10234;10235;10236;10237 15492;15493;15494;15495;15496;15497;15498;15499 15495 48 8 ELEVLSEQYSQK ALRRQYLEELQSVQRELEVLSEQYSQKCLE VQRELEVLSEQYSQKCLENAHLAQALEAER R E L Q K C 0 0 0 0 0 2 3 0 0 0 2 1 0 0 0 2 0 0 1 1 0 0 12 0 1451.7144 B9EGI2;U6FSN9;Q6WCQ1;J3KSW8;H0Y2S9;H0Y7E2;Q9Y6X7;A8CGI1;A8CGI0;H7C3G6 B9EGI2 818 829 MPRIP;Mprip-Ntrk1 fusion gene;KIAA0864;M-RIP Tyrosine-protein kinase receptor;Myosin phosphatase Rho-interacting protein yes no 2 0.0074744 46.891 1 1.5633 1.9445 NaN 1 Median 1.5633 1.9445 NaN 1 0 Median NaN NaN NaN 0 0 Median 8017900 3311300 4706700 8017900 3311300 4706700 0 0 0 2816 928 2887 10238 15500 15500 1 ELEVQHPAAK LEKLFVTNDAATILRELEVQHPAAKMIVMA ATILRELEVQHPAAKMIVMASHMQEQEVGD R E L A K M 2 0 0 0 0 1 2 0 1 0 1 1 0 0 1 0 0 0 0 1 0 0 10 0 1120.5877 Q7Z759;Q53HU0;P50990;H7C4C8 Q7Z759 24 33 CCT8 T-complex protein 1 subunit theta yes no 2;3 0.019903 44.377 1 1 6.6794 8.7429 NaN 1 Median NaN NaN NaN 0 0 Median 6.6794 8.7429 NaN 1 0 Median 8620500 6353100 2267400 6102700 6102700 0 2517800 250440 2267400 2817 1359 2888 10239;10240 15501;15502 15501 2 ELEYFGLSAAILDK SLEYYSFYDDRQKRKELEYFGLSAAILDKN KELEYFGLSAAILDKNFRKAYNYIRIMVME K E L D K N 2 0 0 1 0 0 2 1 0 1 3 1 0 1 0 1 0 0 1 0 0 0 14 0 1567.8134 Q9Y5Q9 Q9Y5Q9 667 680 GTF3C3 General transcription factor 3C polypeptide 3 yes yes 2 6.8109E-06 119.39 4 0.35705 0.46404 NaN 1 Median 0.35705 0.46404 NaN 1 0 Median NaN NaN NaN 0 0 Median 5570800 4274200 1296600 5570800 4274200 1296600 0 0 0 2818 1831 2889 10241;10242;10243;10244 15503;15504;15505;15506 15506 4 ELFALHPSPDEEEPIER IDRQNDDQRKSNRHKELFALHPSPDEEEPI FALHPSPDEEEPIERLSVPDIPKEHFGQRL K E L E R L 1 1 0 1 0 0 5 0 1 1 2 0 0 1 3 1 0 0 0 0 0 0 17 0 2006.9585 Q96N67;A0A1B0GUE9;A0A0C4DGY6;A0A1B0GVW2 Q96N67 234 250 DOCK7 Dedicator of cytokinesis protein 7 yes no 3 0.0043804 58.164 1 0.90123 1.2715 NaN 1 Median 0.90123 1.2715 NaN 1 0 Median NaN NaN NaN 0 0 Median 4188900 2970800 1218100 4188900 2970800 1218100 0 0 0 2819 1696 2890 10245 15507 15507 1 ELFDVVANPLVNDLIHGK QYSFKQVFGTHTTQKELFDVVANPLVNDLI DVVANPLVNDLIHGKNGLLFTYGVTGSGKT K E L G K N 1 0 2 2 0 0 1 1 1 1 3 1 0 1 1 0 0 0 0 3 0 0 18 0 1992.068 H7BYN4;Q02241;H0YME6;H0YMJ4 H7BYN4 87 104 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 3 1.9155E-25 163.9 4 0.94884 1.167 8.7336 3 Median 0.94884 1.167 8.7336 3 0 Median NaN NaN NaN 0 0 Median 70353000 41815000 28538000 70353000 41815000 28538000 0 0 0 2820 1117 2891 10246;10247;10248;10249 15508;15509;15510;15511;15512;15513 15509 6 ELFEENRK IFRPEVYQLPICKLKELFEENRKLQQFSPL LPICKLKELFEENRKLQQFSPLSDYEGQEE K E L R K L 0 1 1 0 0 0 3 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 8 1 1063.5298 Q9UK61;A0A024R363;A0A087X0F1 Q9UK61 621 628 FAM208A;C3orf63 Protein FAM208A yes no 2 0.046202 47.082 1 0.43572 0.63833 NaN 1 Median NaN NaN NaN 0 0 Median 0.43572 0.63833 NaN 1 0 Median 3667000 2633700 1033300 0 0 0 3667000 2633700 1033300 2821 1787 2892 10250 15514 15514 1 ELFEGVQK DAEIVRLKNYYEVHKELFEGVQKWEETWRL NYYEVHKELFEGVQKWEETWRLFLEFERKA K E L Q K W 0 0 0 0 0 1 2 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 8 0 948.49165 A0A024RC67;O43663;H0YL53 A0A024RC67 350 357 PRC1 Protein regulator of cytokinesis 1 yes no 2 0.010971 71.715 1 0.67205 0.84151 NaN 1 Median 0.67205 0.84151 NaN 1 0 Median NaN NaN NaN 0 0 Median 17670000 11634000 6035700 17670000 11634000 6035700 0 0 0 2822 288 2893 10251 15515 15515 1 ELFEQYGAVYEINVLR FVGQVPRTWSEKDLRELFEQYGAVYEINVL LFEQYGAVYEINVLRDRSQNPPQSKGCCFV R E L L R D 1 1 1 0 0 1 3 1 0 1 2 0 0 1 0 0 0 0 2 2 0 0 16 0 1941.9836 G5EA30;Q92879;E9PKA1;F5H4Y5;E9PQK4;E9PSH0;F5H0D8;E9PKU1 G5EA30 61 76 CELF1 CUGBP Elav-like family member 1 yes no 2 0.002598 66.262 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1305400 1305400 0 1305400 1305400 0 0 0 0 2823 1083 2894 10252 15516 15516 1 ELFGPELFR PPGTGKTSTILAAARELFGPELFRLRVLEL ILAAARELFGPELFRLRVLELNASDERGIQ R E L F R L 0 1 0 0 0 0 2 1 0 0 2 0 0 2 1 0 0 0 0 0 0 0 9 0 1106.576 P35249;C9JZI1;C9JXZ7;C9JTT7;C9J8M3 P35249 94 102 RFC4 Replication factor C subunit 4 yes no 2 0.0023116 85.161 2 0.56684 0.78974 2.337 2 Median 0.56684 0.78974 2.337 2 0 Median NaN NaN NaN 0 0 Median 10068000 6326000 3741800 10068000 6326000 3741800 0 0 0 2824 1317 2895 10253;10254 15517;15518;15519;15520 15519 4 ELFPIQMEGVK LPNPGTFEECHRKCKELFPIQMEGVKLTVN RKCKELFPIQMEGVKLTVNKGLSNHFQVNH K E L V K L 0 0 0 0 0 1 2 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 11 0 1289.669 O96008;K7EJ57 O96008 92 102 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes no 2 0.0026336 55.567 1 1.9265 2.8413 NaN 1 Median NaN NaN NaN 0 0 Median 1.9265 2.8413 NaN 1 0 Median 5901500 1775200 4126200 0 0 0 5901500 1775200 4126200 2825 1226 2896 10255 15521 15521 462 1 ELFQTPCTDNPTTDEK RKEKAQALEELTGFRELFQTPCTDNPTTDE LFQTPCTDNPTTDEKTTKKILCKSPQSDPA R E L E K T 0 0 1 2 1 1 2 0 0 0 1 1 0 1 2 0 4 0 0 0 0 0 16 0 1894.8255 P46013 P46013 1837 1852 MKI67 Antigen KI-67 yes yes 2 2.2763E-33 182.25 4 2 0.94396 1.2474 6.2193 6 Median 0.95621 1.2372 1.2839 4 0 Median 0.8726 1.3818 4.5052 2 0 Median 485670000 255680000 229980000 299250000 155670000 143580000 186410000 100010000 86406000 2826 1342 2897 10256;10257;10258;10259;10260;10261 15522;15523;15524;15525;15526;15527;15528;15529;15530;15531;15532;15533;15534;15535;15536;15537 15526 16 ELFQTPDHTEESTTDDK PKEEAQSLEDLAGFKELFQTPDHTEESTTD FQTPDHTEESTTDDKTTKIACKSPPPESMD K E L D K T 0 0 0 3 0 1 3 0 1 0 1 1 0 1 1 1 4 0 0 0 0 0 17 0 1991.8596 P46013 P46013 2081 2097 MKI67 Antigen KI-67 yes yes 2;3 3.3404E-99 270.45 8 2 0.93255 1.242 6.6216 10 Median 0.9393 1.2185 3.5374 8 0 Median 0.87779 1.3852 3.9685 2 0 Median 1522000000 800220000 721810000 1089200000 568950000 520260000 432820000 231270000 201550000 2827 1342 2898 10262;10263;10264;10265;10266;10267;10268;10269;10270;10271 15538;15539;15540;15541;15542;15543;15544;15545;15546;15547;15548;15549;15550;15551;15552;15553;15554;15555;15556;15557 15545 20 ELFQTPGHTEEAVAAGK PKEEAQALEDLTGFKELFQTPGHTEEAVAA FQTPGHTEEAVAAGKTTKMPCESSPPESAD K E L G K T 3 0 0 0 0 1 3 2 1 0 1 1 0 1 1 0 2 0 0 1 0 0 17 0 1783.8741 P46013 P46013 1351 1367 MKI67 Antigen KI-67 yes yes 2;3 2.6605E-113 262.48 6 4 1.016 1.3701 17.927 10 Median 0.94846 1.2459 12.123 6 0 Median 1.0425 1.6573 2.9454 4 0 Median 1711400000 863840000 847560000 1067800000 549390000 518380000 643630000 314450000 329180000 2828 1342 2899 10272;10273;10274;10275;10276;10277;10278;10279;10280;10281 15558;15559;15560;15561;15562;15563;15564;15565;15566;15567;15568;15569;15570;15571;15572;15573;15574;15575;15576;15577;15578;15579;15580 15564 23 ELFQTPGHTEELVAAGK PKEKAQALEDLAGFKELFQTPGHTEELVAA FQTPGHTEELVAAGKTTKIPCDSPQSDPVD K E L G K T 2 0 0 0 0 1 3 2 1 0 2 1 0 1 1 0 2 0 0 1 0 0 17 0 1825.921 P46013 P46013 1229 1245 MKI67 Antigen KI-67 yes yes 2;3 3.0567E-149 296.97 7 3 0.97141 1.2855 20.112 8 Median 0.93377 1.2342 15.498 5 0 Median 1.0028 1.5906 2.0579 3 0 Plateau 1219100000 606080000 613030000 660330000 333060000 327270000 558770000 273020000 285750000 2829 1342 2900 10282;10283;10284;10285;10286;10287;10288;10289;10290;10291 15581;15582;15583;15584;15585;15586;15587;15588;15589;15590;15591;15592;15593;15594;15595;15596;15597;15598;15599;15600 15585 20 ELFQTPGHTEESMTDDK PKEKAKALEDLAGFKELFQTPGHTEESMTD FQTPGHTEESMTDDKITEVSCKSPQPDPVK K E L D K I 0 0 0 2 0 1 3 1 1 0 1 1 1 1 1 1 3 0 0 0 0 0 17 0 1963.8469 P46013 P46013 1959 1975 MKI67 Antigen KI-67 yes no 2;3 3.6103E-14 143.93 9 3 0.97179 1.218 11.773 10 Median 0.98121 1.2088 11.804 7 0 Median 0.88628 1.5135 11.756 3 0 Plateau 322600000 162530000 160070000 127450000 63387000 64060000 195160000 99145000 96012000 2830 1342 2901;2902 10292;10293;10294;10295;10296;10297;10298;10299;10300;10301;10302;10303 15601;15602;15603;15604;15605;15606;15607;15608;15609;15610;15611;15612;15613;15614;15615;15616;15617;15618;15619 15611 571 19 ELFQTPGPSEESMTDEK PKEEAQSLEDLAGFKELFQTPGPSEESMTD FQTPGPSEESMTDEKTTKIACKSPPPESVD K E L E K T 0 0 0 1 0 1 4 1 0 0 1 1 1 1 2 2 2 0 0 0 0 0 17 0 1923.8408 P46013 P46013 1107 1123 MKI67 Antigen KI-67 yes yes 2 2.3422E-25 166.86 6 2 0.95403 1.2411 17.148 8 Median 0.88946 1.1224 11.767 6 0 Median 0.98061 1.5461 0.54258 2 0 Median 568610000 286980000 281630000 45025000 21835000 23190000 523590000 265150000 258440000 2831 1342 2903;2904 10304;10305;10306;10307;10308;10309;10310;10311 15620;15621;15622;15623;15624;15625;15626;15627;15628;15629;15630;15631;15632;15633;15634;15635;15636 15623 572 17 ELFQTPGTDKPTTDEK PKEKAQALEDLAGFKELFQTPGTDKPTTDE LFQTPGTDKPTTDEKTTKIACKSPQPDPVD K E L E K T 0 0 0 2 0 1 2 1 0 0 1 2 0 1 2 0 4 0 0 0 0 0 16 1 1805.8683 P46013 P46013 2321 2336 MKI67 Antigen KI-67 yes yes 2;3 3.2822E-51 215.51 8 3 0.96566 1.1844 13.49 9 Median 0.96566 1.1795 3.9967 7 0 Median 0.9681 1.5683 0.24931 2 0 Median 1154700000 576960000 577740000 880580000 452970000 427610000 274120000 123980000 150130000 2832 1342 2905 10312;10313;10314;10315;10316;10317;10318;10319;10320;10321;10322 15637;15638;15639;15640;15641;15642;15643;15644;15645;15646;15647;15648;15649;15650;15651;15652;15653;15654;15655;15656 15638 20 ELFQTPICTDKPTTHEK PKGKAQPLEDLAGLKELFQTPICTDKPTTH FQTPICTDKPTTHEKTTKIACRSPQPDPVG K E L E K T 0 0 0 1 1 1 2 0 1 1 1 2 0 1 2 0 4 0 0 0 0 0 17 1 2043.9935 P46013 P46013 2199 2215 MKI67 Antigen KI-67 yes yes 3;4 3.0055E-10 126.07 8 2 0.89822 1.1675 7.1029 8 Median 0.96351 1.1764 8.3365 6 0 Median 0.72661 1.1675 2.3683 2 0 Median 453090000 241570000 211520000 386300000 205070000 181230000 66783000 36493000 30290000 2833 1342 2906 10323;10324;10325;10326;10327;10328;10329;10330;10331;10332 15657;15658;15659;15660;15661;15662;15663;15664;15665;15666;15667;15668;15669;15670 15660 14 ELFQTPVCTDKPTTHEK TKEKAQPLEDLAGLKELFQTPVCTDKPTTH FQTPVCTDKPTTHEKTTKIACRSQPDPVDT K E L E K T 0 0 0 1 1 1 2 0 1 0 1 2 0 1 2 0 4 0 0 1 0 0 17 1 2029.9779 P46013 P46013 1472 1488 MKI67 Antigen KI-67 yes yes 3;4 4.572E-11 133.87 4 2 0.97666 1.1901 10.546 6 Median 1.0151 1.2404 11.011 4 0 Median 0.70907 1.1374 1.2431 2 0 Median 440590000 223570000 217020000 387920000 193110000 194810000 52666000 30460000 22206000 2834 1342 2907 10333;10334;10335;10336;10337;10338 15671;15672;15673;15674;15675;15676;15677;15678;15679;15680;15681;15682;15683 15671 13 ELFQTR PKEKAQALEDLAGFKELFQTRGHTEESMTN ALEDLAGFKELFQTRGHTEESMTNDKTAKV K E L T R G 0 1 0 0 0 1 1 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 6 0 792.413 P46013 P46013 1593 1598 MKI67 Antigen KI-67 yes yes 2 0.020779 140.01 4 1 0.94763 1.2894 12.738 5 Median 0.94229 1.2872 3.1571 4 0 Median 1.0317 1.6933 NaN 1 0 Median 749630000 387910000 361720000 688720000 358220000 330500000 60906000 29684000 31222000 2835 1342 2908 10339;10340;10341;10342;10343 15684;15685;15686;15687;15688;15689;15690 15685 7 ELFSAPGHTEESMTIDK RKEKARALEDLVDFKELFSAPGHTEESMTI FSAPGHTEESMTIDKNTKIPCKSPPPELTD K E L D K N 1 0 0 1 0 0 3 1 1 1 1 1 1 1 1 2 2 0 0 0 0 0 17 0 1890.8669 P46013 P46013 2564 2580 MKI67 Antigen KI-67 yes yes 2;3 0.00029163 74.141 4 4 0.96966 1.23 13.964 8 Median 0.94284 1.1934 3.2763 4 0 Median 0.98355 1.5319 13.731 4 0 Median 241670000 119370000 122300000 41576000 20719000 20858000 200090000 98648000 101450000 2836 1342 2909;2910 10344;10345;10346;10347;10348;10349;10350;10351 15691;15692;15693;15694;15695;15696;15697;15698;15699;15700;15701 15697 573 11 ELFSQFGK YIKNFGEEVDDESLKELFSQFGKTLSVKVM VDDESLKELFSQFGKTLSVKVMRDPNGKSK K E L G K T 0 0 0 0 0 1 1 1 0 0 1 1 0 2 0 1 0 0 0 0 0 0 8 0 954.48108 B1ANR0;Q6IQ30;Q13310;H0Y5F5;Q15164;H0YCC8 B1ANR0 209 216 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 yes no 2 0.016134 94.662 3 1 0.25471 0.31706 126.38 4 Median 0.23297 0.29404 10.586 3 0 Median 2.5689 3.7812 NaN 1 0 Median 52142000 36855000 15287000 46322000 35047000 11275000 5819600 1807700 4011900 2837 676 2911 10352;10353;10354;10355 15702;15703;15704;15705 15704 4 ELFTIEDLQNSVTQLQLQSLHAAQR EKKNPFRYFSKQELRELFTIEDLQNSVTQL SVTQLQLQSLHAAQRKSDIKLDEHIAYLQS R E L Q R K 2 1 1 1 0 5 2 0 1 1 5 0 0 1 0 2 2 0 0 1 0 0 25 0 2881.4934 B5MDQ0;Q2NKX8 B5MDQ0 503 527 ERCC6L DNA excision repair protein ERCC-6-like yes no 3 0.0057241 25.408 1 0.74175 0.9934 NaN 1 Median 0.74175 0.9934 NaN 1 0 Median NaN NaN NaN 0 0 Median 6930200 3463500 3466700 6930200 3463500 3466700 0 0 0 2838 902 2912 10356 15706 15706 1 ELFVNADLYIVAGR SDIKLEKFSISAHGKELFVNADLYIVAGRR KELFVNADLYIVAGRRYGLVGPNGKGKTTL K E L G R R 2 1 1 1 0 0 1 1 0 1 2 0 0 1 0 0 0 0 1 2 0 0 14 0 1578.8406 Q8NE71;Q2L6I2;Q59F96;H0YGW7;B4DNU2;Q5STZ8 Q8NE71 317 330 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 0.0005051 59.84 1 0.48636 0.67268 NaN 1 Median 0.48636 0.67268 NaN 1 0 Median NaN NaN NaN 0 0 Median 11630000 7175800 4454400 11630000 7175800 4454400 0 0 0 2839 1653 2913 10357 15707 15707 1 ELGELIPLR QAAGGLRAELLRAQRELGELIPLRQKVAEQ LLRAQRELGELIPLRQKVAEQERTAQQLRA R E L L R Q 0 1 0 0 0 0 2 1 0 1 3 0 0 0 1 0 0 0 0 0 0 0 9 0 1038.6073 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q7Z757;Q96HN5;H0YFY6;K4DIE0;Q4LE64;Q14980 Q4LE64 1405 1413 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.0008673 109.01 4 2 0.67002 0.90315 31.313 6 Median 0.68572 0.92155 2.1361 4 0 Median 0.31602 0.4997 4.5471 2 0 Median 124340000 84224000 40114000 55433000 32636000 22797000 68904000 51587000 17317000 2840 148;1499 2914 10358;10359;10360;10361;10362;10363 15708;15709;15710;15711;15712;15713;15714;15715;15716;15717 15716 10 ELGFDASEVELTR SIKDPMEDQDGLLGKELGFDASEVELTRNN GKELGFDASEVELTRNNELIAVGKGSSLKR K E L T R N 1 1 0 1 0 0 3 1 0 0 2 0 0 1 0 1 1 0 0 1 0 0 13 0 1464.7096 Q6FI18;O00622;B4DI61;Q53FA4;Q9UID7 Q6FI18 182 194 CYR61 Protein CYR61 yes no 2 0.00015632 113.67 5 2 1.4445 2.0685 7.8203 6 Median 1.4832 1.9836 7.3732 4 0 Median 1.3845 2.1808 2.0973 2 0 Median 151730000 64663000 87067000 87390000 39302000 48089000 64339000 25361000 38978000 2841 1168 2915 10364;10365;10366;10367;10368;10369;10370 15718;15719;15720;15721;15722;15723;15724;15725;15726 15720 9 ELGFSSHR ATVKARPSVLWCYKKELGFSSHRKKRMRQL VLWCYKKELGFSSHRKKRMRQLQKKIKNGT K E L H R K 0 1 0 0 0 0 1 1 1 0 1 0 0 1 0 2 0 0 0 0 0 0 8 0 931.45118 Q05CW7;E9PMU0;E9PJN6;Q9H0A0 Q9H0A0 62 69 NAT10 N-acetyltransferase 10 no no 2;3 0.00012181 129.68 5 2 0.76191 1.0438 18.133 7 Median 0.76353 1.0614 19.99 5 0 Median 0.60418 0.97483 2.066 2 0 Median 364970000 201630000 163350000 259680000 136710000 122970000 105290000 64916000 40378000 2842 1730;1443 2916 10371;10372;10373;10374;10375;10376;10377 15727;15728;15729;15730;15731;15732;15733;15734;15735;15736;15737;15738 15729 12 ELGFSSHRK ATVKARPSVLWCYKKELGFSSHRKKRMRQL LWCYKKELGFSSHRKKRMRQLQKKIKNGTL K E L R K K 0 1 0 0 0 0 1 1 1 0 1 1 0 1 0 2 0 0 0 0 0 0 9 1 1059.5461 Q05CW7;E9PMU0;E9PJN6;Q9H0A0 Q9H0A0 62 70 NAT10 N-acetyltransferase 10 no no 2;3 0.0031548 107.01 4 0.88912 1.2002 5.7631 2 Median 0.88912 1.2002 5.7631 2 0 Median NaN NaN NaN 0 0 Median 19636000 8268700 11367000 19636000 8268700 11367000 0 0 0 2843 1730;1443 2917 10378;10379;10380;10381 15739;15740;15741;15742 15740 4 ELGGAIDFGAAYVLEQASSHIGNSTQATVR ALLTWGYIRYSGQYRELGGAIDFGAAYVLE QASSHIGNSTQATVRDAVVGRPSMDKKAQ_ R E L V R D 5 1 1 1 0 2 2 4 1 2 2 0 0 1 0 3 2 0 1 2 0 0 30 0 3061.5105 F5H6I7;B4DXC4;Q6DD88 F5H6I7 480 509 ATL3 Atlastin-3 yes no 3 8.2288E-08 76.98 2 0.37445 0.51608 45.817 2 Median 0.37445 0.51608 45.817 2 0 Median NaN NaN NaN 0 0 Median 7445400 5056400 2389100 7445400 5056400 2389100 0 0 0 2844 868 2918 10382;10383 15743;15744 15743 2 ELGHLTHQQAR EISREGARVLALGYKELGHLTHQQAREVKR LGYKELGHLTHQQAREVKREALECSLKFVG K E L A R E 1 1 0 0 0 2 1 1 2 0 2 0 0 0 0 0 1 0 0 0 0 0 11 0 1288.6636 A0A024R7N2;Q9HD20;A0A024R7P3;Q8NC73 A0A024R7N2 692 702 ATP13A1 Manganese-transporting ATPase 13A1 yes no 3 0.0054582 105.4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2390100 2390100 0 2390100 2390100 0 0 0 0 2845 181 2919 10384;10385 15745;15746 15745 2 ELGIQVHSVTR RQAPVTRVLVLVPTRELGIQVHSVTRQLAQ VPTRELGIQVHSVTRQLAQFCNITTCLAVG R E L T R Q 0 1 0 0 0 1 1 1 1 1 1 0 0 0 0 1 1 0 0 2 0 0 11 0 1237.6779 B7Z6D5;B3GQE6;Q96GQ7;A0A087X059 B7Z6D5 269 279 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2;3 3.0261E-06 127.76 7 4 0.76117 1.0278 12.025 10 Median 0.77279 1.0407 8.6688 6 0 Median 0.61012 0.96283 6.4154 4 0 Linear 327950000 183700000 144260000 206040000 108170000 97872000 121920000 75531000 46385000 2846 750 2920 10386;10387;10388;10389;10390;10391;10392;10393;10394;10395;10396 15747;15748;15749;15750;15751;15752;15753;15754;15755;15756;15757;15758;15759;15760;15761;15762 15758 16 ELGITALHIK YAAMLAAQDVAQRCKELGITALHIKLRATG AQRCKELGITALHIKLRATGGNRTKTPGPG K E L I K L 1 0 0 0 0 0 1 1 1 2 2 1 0 0 0 0 1 0 0 0 0 0 10 0 1093.6495 P62263;E5RH77;H0YB22;A4D1M5 P62263 87 96 RPS14;LOC401404 40S ribosomal protein S14 yes no 2;3 1.4454E-06 130.31 7 2 0.81051 1.0713 29.801 9 Median 0.81236 1.0727 11.325 7 0 Median 0.3511 0.5543 1.104 2 0 Median 1664800000 993030000 671770000 1185600000 638140000 547440000 479220000 354900000 124330000 2847 1401 2921 10397;10398;10399;10400;10401;10402;10403;10404;10405 15763;15764;15765;15766;15767;15768;15769;15770;15771;15772;15773;15774;15775;15776;15777;15778;15779 15763 17 ELGLDEGVDSLK RRAQEEAKEAEMSRKELGLDEGVDSLKAAI SRKELGLDEGVDSLKAAIQSRQKDWQKEMD K E L L K A 0 0 0 2 0 0 2 2 0 0 3 1 0 0 0 1 0 0 0 1 0 0 12 0 1273.6402 Q2VIL4;A0A024QZN2;Q8WXX5 Q2VIL4 198 209 hCG_2024613;DNAJC9 DnaJ homolog subfamily C member 9 yes no 2 0.036068 62.633 1 0.81014 1.0106 NaN 1 Median 0.81014 1.0106 NaN 1 0 Median NaN NaN NaN 0 0 Median 1158900 556840 602060 1158900 556840 602060 0 0 0 2848 16 2922 10406 15780 15780 1 ELGTLIPK LIERRRRFNINDRIKELGTLIPKSSDPEMR NINDRIKELGTLIPKSSDPEMRWNKGTILK K E L P K S 0 0 0 0 0 0 1 1 0 1 2 1 0 0 1 0 1 0 0 0 0 0 8 0 869.52222 A0A0H3W5T2;B4DNC7;A8K5K3;O75030;C9JBI8;Q75KY0;B7Z757;O14948;A0A024QZ23;P19532;B4DIA5 A0A024QZ23 368 375 MITF;TFEC;TFE3 Microphthalmia-associated transcription factor;Transcription factor EC;Transcription factor E3 no no 2 0.019112 58.981 1 0.93311 1.178 NaN 1 Median 0.93311 1.178 NaN 1 0 Median NaN NaN NaN 0 0 Median 9737500 4596500 5140900 9737500 4596500 5140900 0 0 0 2849 4;440 2923 10407 15781 15781 1 ELHENVLDK ENGLEKDLDEEGSEKELHENVLDKELEEND EEGSEKELHENVLDKELEENDSENSEFEDD K E L D K E 0 0 1 1 0 0 2 0 1 0 2 1 0 0 0 0 0 0 0 1 0 0 9 0 1095.556 O43719;B4DRS4 O43719 582 590 HTATSF1 HIV Tat-specific factor 1 yes no 2 0.0036538 76.345 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5474500 0 5474500 0 0 0 5474500 0 5474500 2850 1187 2924 10408 15782 15782 1 ELHESAIVK IDPLLFKYKVQPTKKELHESAIVKATQISR VQPTKKELHESAIVKATQISRRKHLFSRDK K E L V K A 1 0 0 0 0 0 2 0 1 1 1 1 0 0 0 1 0 0 0 1 0 0 9 0 1024.5553 D3DS96;Q9NRL2;Q05CW0;Q32ND1 D3DS96 200 208 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 0.00079825 110.12 2 0.63456 0.88507 1.8903 2 Median NaN NaN NaN 0 0 Median 0.63456 0.88507 1.8903 2 0 Median 9955800 5795100 4160700 0 0 0 9955800 5795100 4160700 2851 979 2925 10409;10410 15783;15784 15783 2 ELHGPFSQVEDLER QRIGPKKAQLIVGWRELHGPFSQVEDLERV RELHGPFSQVEDLERVEGITGKQMESFLKA R E L E R V 0 1 0 1 0 1 3 1 1 0 2 0 0 1 1 1 0 0 0 1 0 0 14 0 1654.7951 Q14807;A0A024R632;B7Z9T5;H3BRB3;Q14985;O60846;Q14984 Q14807 623 636 KIF22;OBP-2;A-328A3.5;OBP-1 Kinesin-like protein KIF22;Kinesin-like protein yes no 3 0.010973 22.855 2 1 0.6777 0.94489 20.588 2 Median 0.80993 1.093 NaN 1 0 Median 0.56706 0.81688 NaN 1 0 Median 23073000 16295000 6777800 11763000 8207900 3554700 11310000 8087300 3223100 2852 1497 2926 10411;10412;10413 15785;15786;15787 15787 3 ELHGPFSQVEDLERVEGITGK QRIGPKKAQLIVGWRELHGPFSQVEDLERV SQVEDLERVEGITGKQMESFLKANILGLAA R E L G K Q 0 1 0 1 0 1 4 3 1 1 2 1 0 1 1 1 1 0 0 2 0 0 21 1 2339.1757 Q14807;A0A024R632;B7Z9T5;H3BRB3;Q14985;O60846;Q14984 Q14807 623 643 KIF22;OBP-2;A-328A3.5;OBP-1 Kinesin-like protein KIF22;Kinesin-like protein yes no 3;4 0.024328 35.672 1 1 0.64836 0.94643 1.9965 2 Median 0.71529 0.95989 NaN 1 0 Median 0.58769 0.93317 NaN 1 0 Median 17377000 9123800 8252700 4289000 1599700 2689200 13088000 7524000 5563500 2853 1497 2927 10414;10415 15788;15789 15789 2 ELHGTSIVPK IRGSYLTVTLQRPTKELHGTSIVPKLQAIT QRPTKELHGTSIVPKLQAITASSANLRHSP K E L P K L 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 1 0 0 10 0 1079.5975 I3VM54;I3VM53;Q9Y2K7;B4DSG1 I3VM54 792 801 KDM2A Lysine-specific demethylase 2A yes no 2 0.0070575 57.047 2 0.33618 0.48277 0.44377 2 Median NaN NaN NaN 0 0 Median 0.33618 0.48277 0.44377 2 0 Median 12239000 8811000 3428200 0 0 0 12239000 8811000 3428200 2854 1128 2928 10416;10417 15790;15791 15790 2 ELHINLIPNK RYESLTDPSKLDSGKELHINLIPNKQDRTL LDSGKELHINLIPNKQDRTLTIVDTGIGMT K E L N K Q 0 0 2 0 0 0 1 0 1 2 2 1 0 0 1 0 0 0 0 0 0 0 10 0 1189.6819 K9JA46;P07900;Q2VPJ6;G3V2J8;B4DTA5;Q86SX1;Q14568 K9JA46 75 84 EL52;HSP90AA1;HSP90AA2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 yes no 2;3 8.1929E-16 175.91 5 2 2.1764 3.1609 80.705 3 Plateau 0.55068 0.70823 NaN 1 0 Median 1.9299 2.8278 15.75 2 0 Median 28454000 13546000 14908000 15760000 8368200 7392200 12694000 5177900 7515600 2855 1155 2929 10418;10419;10420;10421;10422;10423;10424 15792;15793;15794;15795;15796;15797;15798 15794 7 ELIDGDPSLPPEK NQLRERHQSLKKKYRELIDGDPSLPPEKRK YRELIDGDPSLPPEKRKQANLAQLLRDSQD R E L E K R 0 0 0 2 0 0 2 1 0 1 2 1 0 0 3 1 0 0 0 0 0 0 13 0 1408.7086 A0A0U1RQD2;Q6ZUS6 A0A0U1RQD2 73 85 CCDC149 Coiled-coil domain-containing protein 149 yes no 2 0.00011647 117.53 1 1.0002 1.2999 NaN 1 Median 1.0002 1.2999 NaN 1 0 Median NaN NaN NaN 0 0 Median 44457000 22633000 21823000 44457000 22633000 21823000 0 0 0 2856 485 2930 10425 15799 15799 1 ELIEDDFEVNVNDAR QNLSKKKKKQLMKKKELIEDDFEVNVNDAR ELIEDDFEVNVNDARFQAMYTSHLFNLDPS K E L A R F 1 1 2 3 0 0 3 0 0 1 1 0 0 1 0 0 0 0 0 2 0 0 15 0 1776.8166 Q9H501 Q9H501 747 761 ESF1 ESF1 homolog yes yes 2 3.6719E-10 145.31 4 1.0107 1.3802 11.524 4 Median 1.0107 1.3802 11.524 4 0 Median NaN NaN NaN 0 0 Median 18718000 8512500 10205000 18718000 8512500 10205000 0 0 0 2857 1734 2931 10426;10427;10428;10429 15800;15801;15802;15803;15804 15802 5 ELIEELIAK TQQEGEEREKPKSRKELIEELIAKSKQEKR KPKSRKELIEELIAKSKQEKRERQAQREDA K E L A K S 1 0 0 0 0 0 3 0 0 2 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1056.6067 A8KA74;P78316;E9PFK5 A8KA74 191 199 NOP14 Nucleolar protein 14 yes no 2 0.0015306 116.25 3 2 0.77347 1.0594 11.979 4 Median 0.95217 1.1926 12.476 2 0 Median 0.67053 1.0119 2.2277 2 0 Median 70750000 36762000 33988000 38821000 18500000 20321000 31929000 18261000 13667000 2858 652 2932 10430;10431;10432;10433;10434 15805;15806;15807;15808;15809 15809 5 ELIHLLPIK KYEKIPRTLQTAPEKELIHLLPIKDKSGII QTAPEKELIHLLPIKDKSGIIPQTREKPVT K E L I K D 0 0 0 0 0 0 1 0 1 2 3 1 0 0 1 0 0 0 0 0 0 0 9 0 1074.6801 A8K905;Q8WTT2 A8K905 148 156 NOC3L Nucleolar complex protein 3 homolog yes no 2 1.0312E-05 147.34 3 2 0.87413 1.1088 14.352 5 Median 0.88384 1.1088 12.742 3 0 Median 0.6753 1.0094 14.485 2 0 Median 52628000 26479000 26149000 34494000 17612000 16882000 18134000 8866800 9266700 2859 643 2933 10435;10436;10437;10438;10439 15810;15811;15812;15813;15814;15815;15816;15817;15818;15819 15819 10 ELILFSNSDNER GQTTTYLTYNDFINKELILFSNSDNERSIP INKELILFSNSDNERSIPSMVDGLKPGQRK K E L E R S 0 1 2 1 0 0 2 0 0 1 2 0 0 1 0 2 0 0 0 0 0 0 12 0 1435.6943 P11388;Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80 P11388 702 713 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2 9.7826E-55 211.64 6 2 0.82971 1.1689 4.2025 6 Median 0.85291 1.1543 1.5598 4 0 Linear 0.73987 1.2456 1.4207 2 0 Median 5621600000 3087000000 2534600000 3673700000 1962300000 1711400000 1947900000 1124700000 823220000 2860 1256;1437 2934 10440;10441;10442;10443;10444;10445;10446;10447 15820;15821;15822;15823;15824;15825;15826;15827;15828;15829;15830;15831;15832;15833;15834;15835;15836 15825 17 ELILHNPVTLK FLMSATFNEDVQALKELILHNPVTLKLQES QALKELILHNPVTLKLQESQLPGPDQLQQF K E L L K L 0 0 1 0 0 0 1 0 1 1 3 1 0 0 1 0 1 0 0 1 0 0 11 0 1275.7551 Q9NY93;H7C3E9;G3V0G3 Q9NY93 209 219 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2;3 2.7871E-06 112.83 5 1 1.0233 1.2999 6.3261 6 Median 1.0319 1.3091 5.6431 5 0 Median 0.79868 1.2185 NaN 1 0 Median 67969000 34530000 33439000 47787000 23084000 24702000 20182000 11446000 8736100 2861 1768 2935 10448;10449;10450;10451;10452;10453 15837;15838;15839;15840;15841;15842;15843;15844 15839 8 ELIPTEEALR PYTEQTISLFQAMKKELIPTEEALRLLDAQ QAMKKELIPTEEALRLLDAQLATGGIVDPR K E L L R L 1 1 0 0 0 0 3 0 0 1 2 0 0 0 1 0 1 0 0 0 0 0 10 0 1169.6292 Q15149;D3DWL0;Q96IE3 Q15149 3926 3935 PLEC;PLEC1 Plectin yes no 2 0.00045689 128.12 4 2 0.68956 0.93388 71.672 5 Median 0.56816 0.77848 11.23 3 0 Median 2.1104 2.9832 17.724 2 0 Median 161480000 103140000 58337000 143710000 97190000 46518000 17771000 5951400 11820000 2862 1507 2936 10454;10455;10456;10457;10458;10459 15845;15846;15847;15848;15849;15850;15851;15852 15848 8 ELIQEYGAQSGGLEK WDLLSSPYFTEDRKRELIQEYGAQSGGLEK ELIQEYGAQSGGLEKLLEIITTTIEETETQ R E L E K L 1 0 0 0 0 2 3 3 0 1 2 1 0 0 0 1 0 0 1 0 0 0 15 0 1620.7995 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 1812 1826 EPPK1 Epiplakin no no 2 4.2621E-15 155.86 4 1 0.59026 0.73972 8.3049 4 Median 0.59026 0.73972 8.3049 4 0 Median NaN NaN NaN 0 0 Median 25270000 12366000 12904000 20253000 12366000 7887100 5016900 0 5016900 2863 373;1386 2937 10460;10461;10462;10463;10464 15853;15854;15855;15856;15857;15858;15859;15860;15861 15859 9 ELISNASDALDK LIINTFYSNKEIFLRELISNASDALDKIRY FLRELISNASDALDKIRYESLTDPSKLDSG R E L D K I 2 0 1 2 0 0 1 0 0 1 2 1 0 0 0 2 0 0 0 0 0 0 12 0 1274.6354 A0A024RD80;P08238;B4DMA2;B4DGL0;Q6PK50;F8W026;B4DQX3;Q96GW1;Q59FC6 A0A024RD80 42 53 HSP90AB1;HSP90B1 Heat shock protein HSP 90-beta no no 2 9.2747E-16 169.93 4 2 0.45969 0.58533 111.97 5 Median 0.45934 0.58398 0.78632 4 0 Median 4.4135 7.161 NaN 1 0 Median 350640000 175790000 174850000 242800000 165820000 76987000 107840000 9972200 97863000 2864 312 2938 10465;10466;10467;10468;10469;10470 15862;15863;15864;15865;15866;15867;15868;15869;15870;15871 15866 10 ELISNSSDALDK LIINTFYSNKEIFLRELISNSSDALDKIRY FLRELISNSSDALDKIRYESLTDPSKLDSG R E L D K I 1 0 1 2 0 0 1 0 0 1 2 1 0 0 0 3 0 0 0 0 0 0 12 0 1290.6303 K9JA46;P07900;Q2VPJ6;G3V2J8;B4DTA5;Q86SX1;Q14568 K9JA46 47 58 EL52;HSP90AA1;HSP90AA2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 yes no 2 6.6571E-07 132.78 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17276000 17276000 0 17276000 17276000 0 0 0 0 2865 1155 2939 10471;10472 15872;15873 15873 2 ELLADQNLK FIDIYLDELSKVGGKELLADQNLKFIDPFC SKVGGKELLADQNLKFIDPFCKIAAKTKDH K E L L K F 1 0 1 1 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1042.5659 Q14684;Q6PJM8 Q14684 183 191 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 2 0.0088848 65.313 1 1 0.41046 0.51098 NaN 1 Median 0.41046 0.51098 NaN 1 0 Median NaN NaN NaN 0 0 Median 61062000 44292000 16769000 61062000 44292000 16769000 0 0 0 2866 1493 2940 10473;10474 15874;15875 15874 2 ELLEIVK SISIFHYGTSQKSERELLEIVKKNFDLRPG GTSQKSERELLEIVKKNFDLRPGVIVR___ R E L V K K 0 0 0 0 0 0 2 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 7 0 842.51132 B4DEX8;A0A140VJP5;P31153;B4DFQ8;B4E1K2;B4DN74 B4DEX8 344 350 MAT2A S-adenosylmethionine synthase;S-adenosylmethionine synthase isoform type-2 yes no 2 0.021146 64.803 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2867 501 2941 10475 15876 15876 1 ELLEIVKK SISIFHYGTSQKSERELLEIVKKNFDLRPG TSQKSERELLEIVKKNFDLRPGVIVR____ R E L K K N 0 0 0 0 0 0 2 0 0 1 2 2 0 0 0 0 0 0 0 1 0 0 8 1 970.60628 B4DEX8;A0A140VJP5;P31153;B4DFQ8;B4E1K2;B4DN74 B4DEX8 344 351 MAT2A S-adenosylmethionine synthase;S-adenosylmethionine synthase isoform type-2 yes no 2 0.007004 79.116 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5881600 5881600 0 5881600 5881600 0 0 0 0 2868 501 2942 10476 15877 15877 1 ELLEQISAFDNVPR ISELIKRPNVSPKVRELLEQISAFDNVPRK RELLEQISAFDNVPRKKAKFQNWMKNSLKV R E L P R K 1 1 1 1 0 1 2 0 0 1 2 0 0 1 1 1 0 0 0 1 0 0 14 0 1629.8362 Q9NX58;A8K3Y5 Q9NX58 96 109 LYAR Cell growth-regulating nucleolar protein yes no 2 1.347E-50 231.07 4 2 0.80465 1.116 3.1793 5 Median 0.86961 1.1584 4.2644 3 0 Plateau 0.67918 1.1067 1.1906 2 0 Median 224590000 120200000 104390000 57659000 26285000 31374000 166930000 93917000 73018000 2869 1766 2943 10477;10478;10479;10480;10481;10482 15878;15879;15880;15881;15882;15883;15884;15885 15879 8 ELLEQISAFDNVPRK ISELIKRPNVSPKVRELLEQISAFDNVPRK ELLEQISAFDNVPRKKAKFQNWMKNSLKVH R E L R K K 1 1 1 1 0 1 2 0 0 1 2 1 0 1 1 1 0 0 0 1 0 0 15 1 1757.9312 Q9NX58;A8K3Y5 Q9NX58 96 110 LYAR Cell growth-regulating nucleolar protein yes no 3 0.0016301 72.209 1 1 1.0142 1.4676 14.37 2 Median 1.1796 1.6246 NaN 1 0 Median 0.87195 1.3258 NaN 1 0 Median 6800800 3381500 3419300 1944400 979510 964920 4856300 2402000 2454300 2870 1766 2944 10483;10484 15886;15887 15886 2 ELLFLSNANPSLLER NWLQHEKAPTEEGKKELLFLSNANPSLLER ELLFLSNANPSLLERHCAYL__________ K E L E R H 1 1 2 0 0 0 2 0 0 0 5 0 0 1 1 2 0 0 0 0 0 0 15 0 1714.9254 P51398;V9GZ61;V9GYW1;V9GYA7;V9GYF7 P51398 379 393 DAP3 28S ribosomal protein S29, mitochondrial yes no 2 9.1E-06 112.43 4 1 0.42584 0.59747 84.848 3 Median 0.41685 0.58243 3.6059 2 0 Median 1.9889 2.5305 NaN 1 0 Median 19925000 14189000 5736100 16097000 13093000 3003800 3828300 1096000 2732200 2871 1361 2945 10485;10486;10487;10488;10489 15888;15889;15890;15891;15892;15893 15889 6 ELLGPPEAK SLQPHALGPVKLSQKELLGPPEAKRARGPE VKLSQKELLGPPEAKRARGPEEEEIGSPEP K E L A K R 1 0 0 0 0 0 2 1 0 0 2 1 0 0 2 0 0 0 0 0 0 0 9 0 952.52295 Q14807;A0A024R632;B7Z9T5;H3BRB3 Q14807 392 400 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 0.02371 49.833 1 2 0.63243 0.93893 12.732 3 Median 0.96339 1.1651 NaN 1 0 Median 0.62215 0.93464 0.64741 2 0 Median 49498000 28264000 21234000 27340000 14765000 12574000 22159000 13499000 8659800 2872 1497 2946 10490;10491;10492 15894;15895;15896 15895 3 ELLIFNK IKDELKKVCSTNDLKELLIFNKQQVPSGES VCSTNDLKELLIFNKQQVPSGESAILDRVA K E L N K Q 0 0 1 0 0 0 1 0 0 1 2 1 0 1 0 0 0 0 0 0 0 0 7 0 875.51165 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 263 269 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.01024 122.51 5 3 1.042 1.3455 42.035 5 Median 1.0803 1.4063 3.777 3 0 Median 0.40946 0.65356 8.5774 2 0 Median 371600000 203230000 168370000 286160000 141070000 145090000 85439000 62166000 23273000 2873 107 2947 10493;10494;10495;10496;10497;10498;10499;10500 15897;15898;15899;15900;15901;15902;15903;15904;15905;15906;15907 15907 11 ELLIIGGVAAR NIKQFKKYIDNPKLRELLIIGGVAARDQLS PKLRELLIIGGVAARDQLSVLENGVDIVVG R E L A R D 2 1 0 0 0 0 1 2 0 2 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1110.6761 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 239 249 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.00036826 99.442 3 2 0.65412 0.9299 13.163 4 Median 0.65012 0.89126 20.386 2 0 Median 0.65412 0.9299 9.2859 2 0 Median 32366000 16152000 16214000 17038000 6850100 10188000 15328000 9301700 6026000 2874 378 2948 10501;10502;10503;10504;10505 15908;15909;15910;15911;15912;15913;15914;15915 15911 8 ELLIQIFSTPR FDPAFDELPHYALLKELLIQIFSTPRYHPK ALLKELLIQIFSTPRYHPKSQPFVDHVFTF K E L P R Y 0 1 0 0 0 1 1 0 0 2 2 0 0 1 1 1 1 0 0 0 0 0 11 0 1315.75 Q8TDN6;A0JLQ5 Q8TDN6 183 193 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 2 3.3052E-44 232.41 5 2 0.90371 1.3252 10.115 7 Median 0.95718 1.3309 11.352 5 0 Median 0.79568 1.2407 9.3173 2 0 Median 668400000 339270000 329130000 619060000 313020000 306040000 49335000 26250000 23085000 2875 1659 2949 10506;10507;10508;10509;10510;10511;10512 15916;15917;15918;15919;15920;15921;15922;15923;15924;15925;15926;15927;15928;15929;15930;15931;15932;15933 15917 18 ELLITDLLPDNR KGSKQQCLMALDTFKELLITDLLPDNRKLR TFKELLITDLLPDNRKLRIFSQRPFDKLEQ K E L N R K 0 1 1 2 0 0 1 0 0 1 4 0 0 0 1 0 1 0 0 0 0 0 12 0 1410.7718 B2R5U7;Q03701 B2R5U7 291 302 CEBPZ CCAAT/enhancer-binding protein zeta no no 2 2.2482E-10 153.1 3 2 0.63521 0.89381 4.834 4 Median 0.69352 0.93468 1.1574 2 0 Median 0.58761 0.86033 0.23335 2 0 Median 38470000 21777000 16693000 10771000 5515400 5255900 27699000 16262000 11437000 2876 693;1441 2950 10513;10514;10515;10516;10517 15934;15935;15936;15937;15938;15939;15940;15941;15942 15936 9 ELLITDLLPDNRK KGSKQQCLMALDTFKELLITDLLPDNRKLR FKELLITDLLPDNRKLRIFSQRPFDKLEQL K E L R K L 0 1 1 2 0 0 1 0 0 1 4 1 0 0 1 0 1 0 0 0 0 0 13 1 1538.8668 B2R5U7;Q03701 B2R5U7 291 303 CEBPZ CCAAT/enhancer-binding protein zeta no no 3 3.4578E-06 84.169 4 0.70393 0.9414 22.315 4 Median 0.70393 0.9414 22.315 4 0 Median NaN NaN NaN 0 0 Median 46012000 27789000 18223000 46012000 27789000 18223000 0 0 0 2877 693;1441 2951 10518;10519;10520;10521 15943;15944;15945;15946 15945 4 ELLLQPVTISR VERHNKPEVEVRSSKELLLQPVTISRNEKE RSSKELLLQPVTISRNEKEKVLIEGSINSV K E L S R N 0 1 0 0 0 1 1 0 0 1 3 0 0 0 1 1 1 0 0 1 0 0 11 0 1267.75 F8WDD7;F8WCF6;A0A0A6YYG9;P59998;Q9H7Z5;H7C0A3 F8WDD7 45 55 ARPC4;ARPC4-TTLL3 Actin-related protein 2/3 complex subunit 4 yes no 2 0.00014362 126.39 5 1.1899 1.6261 10.507 4 Median 1.1899 1.6261 10.507 4 0 Median NaN NaN NaN 0 0 Median 43503000 19541000 23962000 43503000 19541000 23962000 0 0 0 2878 407 2952 10522;10523;10524;10525;10526 15947;15948;15949;15950;15951;15952;15953 15952 7 ELLLSAIDSVNATSK NKDEKDILRCAHLQKELLLSAIDSVNATSK ELLLSAIDSVNATSKTGGYLVYCTCSITVE K E L S K T 2 0 1 1 0 0 1 0 0 1 3 1 0 0 0 3 1 0 0 1 0 0 15 0 1559.8407 P46087 P46087 493 507 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 6.2244E-62 242.97 4 2 0.72752 0.93646 17.628 6 Median 0.74086 0.95947 14.362 4 0 Median 0.49569 0.78301 1.0164 2 0 Median 689770000 432640000 257130000 375400000 220830000 154580000 314370000 211810000 102550000 2879 1343 2953 10527;10528;10529;10530;10531;10532 15954;15955;15956;15957;15958;15959;15960;15961;15962;15963;15964;15965 15956 12 ELLNETEEEINK NCLVKYRAQVYVPLKELLNETEEEINKALN PLKELLNETEEEINKALNKKMGLEDTLEQL K E L N K A 0 0 2 0 0 0 5 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 12 0 1459.7042 A8K031;O14777;Q05DQ6 A8K031 463 474 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 1.8336E-17 179.1 4 1 0.53303 0.67485 12.129 4 Median 0.53303 0.67485 12.129 4 0 Median NaN NaN NaN 0 0 Median 33333000 19423000 13909000 29783000 19423000 10360000 3549500 0 3549500 2880 574 2954 10533;10534;10535;10536;10537 15966;15967;15968;15969;15970;15971;15972;15973;15974 15967 9 ELLNPVVEFVSHPSTTCR IIYKMMPKLKPVELRELLNPVVEFVSHPST NPVVEFVSHPSTTCREQMYNILMWIHDNYR R E L C R E 0 1 1 0 1 0 2 0 1 0 2 0 0 1 2 2 2 0 0 3 0 0 18 0 2084.0361 P78527 P78527 2453 2470 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 1.0289E-06 67.994 4 1 0.41366 0.55106 26.115 5 Median 0.38618 0.5174 15.628 4 0 Median 0.5633 0.8739 NaN 1 0 Median 101990000 69577000 32418000 72974000 50884000 22090000 29021000 18692000 10328000 2881 1427 2955 10538;10539;10540;10541;10542 15975;15976;15977;15978;15979;15980;15981;15982;15983;15984 15981 10 ELLNVGVSSLCAGPYQNTADTK KAIHTLQDVSTCETKELLNVGVSSLCAGPY SSLCAGPYQNTADTKENLSKEPLASFVSES K E L T K E 2 0 2 1 1 1 1 2 0 0 3 1 0 0 1 2 2 0 1 2 0 0 22 0 2336.1318 Q5VWN6;Q6IPC8 Q5VWN6 1743 1764 FAM208B;C10orf18 Protein FAM208B yes no 2 7.1213E-05 88.311 2 1.772 2.1927 NaN 1 Median 1.772 2.1927 NaN 1 0 Median NaN NaN NaN 0 0 Median 1601100 1080500 520640 1601100 1080500 520640 0 0 0 2882 1579 2956 10543;10544 15985;15986;15987 15987 3 ELLPLIYHHLLR ______________________________ KRRELLPLIYHHLLRAGYVRAAREVKEQSG R E L L R A 0 1 0 0 0 0 1 0 2 1 5 0 0 0 1 0 0 0 1 0 0 0 12 0 1515.8926 E7ETY2;B4DLB1;J3KQ96;Q13428 E7ETY2 9 20 TCOF1 Treacle protein no no 3 0.00054209 57.019 1 2 0.96702 1.4413 13.234 3 Median 0.96702 1.2686 NaN 1 0 Median 0.98701 1.5435 9.6886 2 0 Median 65716000 32092000 33624000 8156800 3880100 4276600 57559000 28212000 29347000 2883 1016;1135;1469 2957 10545;10546;10547 15988;15989;15990 15988 3 ELLQDIGDTLSR SLIAQLEEKQQQPTRELLQDIGDTLSRAER PTRELLQDIGDTLSRAERIRIPEPWITPPD R E L S R A 0 1 0 2 0 1 1 1 0 1 3 0 0 0 0 1 1 0 0 0 0 0 12 0 1358.7042 P14373;Q59EC6 P14373 246 257 TRIM27 Zinc finger protein RFP yes no 2 0.00029838 84.658 4 1 0.91959 1.3205 12.819 2 Median 0.85353 1.2061 NaN 1 0 Median 0.99076 1.4458 NaN 1 0 Median 9151000 4556600 4594400 2776100 1045300 1730800 6374800 3511200 2863600 2884 1266 2958 10548;10549;10550;10551;10552 15991;15992;15993;15994;15995;15996 15993 6 ELLTASATAPK E L P K 3 0 0 0 0 0 1 0 0 0 2 1 0 0 1 1 2 0 0 0 0 0 11 0 1100.6077 REV__O95996 yes yes 2 0.013166 78.939 1 0.82985 1.0394 NaN 1 Median 0.82985 1.0394 NaN 1 0 Median NaN NaN NaN 0 0 Median 14875000 8136500 6738000 14875000 8136500 6738000 0 0 0 + 2885 1854 2959 10553 15997 15997 1 ELLTEFGYK VQDSEMVELVELEIRELLTEFGYKGEETPV VELEIRELLTEFGYKGEETPVIVGSALCAL R E L Y K G 0 0 0 0 0 0 2 1 0 0 2 1 0 1 0 0 1 0 1 0 0 0 9 0 1098.5597 P49411 P49411 201 209 TUFM Elongation factor Tu, mitochondrial yes yes 2 0.0027896 81.191 2 0.47649 0.60354 NaN 1 Median 0.47649 0.60354 NaN 1 0 Median NaN NaN NaN 0 0 Median 14899000 11325000 3574100 14899000 11325000 3574100 0 0 0 2886 1350 2960 10554;10555 15998;15999 15998 2 ELLTLDEK WRVKFTLAKIRKAARELLTLDEKDPRRLFE KIRKAARELLTLDEKDPRRLFEGNALLRRL R E L E K D 0 0 0 1 0 0 2 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 8 0 959.51753 A0A024R4M0;P46781;B5MCT8;C9JM19;B7Z732;F2Z3C0;A8MXK4 A0A024R4M0 59 66 RPS9 40S ribosomal protein S9 yes no 1;2 1.3162E-16 176.09 5 2 0.80135 1.0504 12.67 6 Median 0.81508 1.0716 1.9457 4 0 Median 0.52838 0.83602 1.8456 2 0 Median 690370000 396850000 293520000 475560000 265130000 210430000 214810000 131720000 83089000 2887 124 2961 10556;10557;10558;10559;10560;10561;10562 16000;16001;16002;16003;16004;16005;16006;16007;16008;16009;16010 16001 11 ELLTLDEKDPR WRVKFTLAKIRKAARELLTLDEKDPRRLFE KAARELLTLDEKDPRRLFEGNALLRRLVRI R E L P R R 0 1 0 2 0 0 2 0 0 0 3 1 0 0 1 0 1 0 0 0 0 0 11 1 1327.6983 A0A024R4M0;P46781;B5MCT8;C9JM19;B7Z732;F2Z3C0;A8MXK4 A0A024R4M0 59 69 RPS9 40S ribosomal protein S9 yes no 2 2.8688E-22 172.98 2 1 0.86248 1.1299 6.9851 3 Plateau 0.85241 1.1152 1.855 2 0 Median 0.59367 0.99023 NaN 1 0 Median 82611000 45759000 36852000 63640000 33426000 30214000 18971000 12333000 6638000 2888 124 2962 10563;10564;10565 16011;16012;16013 16011 3 ELLTSFGPLK FIGGLPNYLNDDQVKELLTSFGPLKAFNLV DDQVKELLTSFGPLKAFNLVKDSATGLSKG K E L L K A 0 0 0 0 0 0 1 1 0 0 3 1 0 1 1 1 1 0 0 0 0 0 10 0 1103.6227 K7ENG2;B5BU25;P26368 K7ENG2 113 122 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 2 0.0026771 106.68 4 0.53352 0.6772 8.5175 4 Median 0.53352 0.6772 8.5175 4 0 Median NaN NaN NaN 0 0 Median 16028000 10374000 5653400 16028000 10374000 5653400 0 0 0 2889 893 2963 10566;10567;10568;10569 16014;16015;16016;16017 16014 4 ELLVPQHTVQLVGGLSPLSSPSDTK VLIQLSPPNTDADTRELLVPQHTVQLVGGL LVGGLSPLSSPSDTKAESPAEKVPEESVLP R E L T K A 0 0 0 1 0 2 1 2 1 0 5 1 0 0 3 4 2 0 0 3 0 0 25 0 2601.4014 B4DQZ7 B4DQZ7 365 389 yes yes 3 2.072E-09 80.031 3 0.55662 0.70109 7.4863 2 Median 0.55662 0.70109 7.4863 2 0 Median NaN NaN NaN 0 0 Median 6607600 4577400 2030200 6607600 4577400 2030200 0 0 0 2890 851 2964 10570;10571;10572 16018;16019;16020;16021 16021 4 ELNEDKLEK NATYCRLAQFIGNRRELNEDKLEKLEELTM FIGNRRELNEDKLEKLEELTMDGAKAKAIL R E L E K L 0 0 1 1 0 0 3 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 9 1 1116.5663 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 222 230 NOP56 Nucleolar protein 56 yes no 2 1.0124E-28 191.67 3 2 0.65144 0.82681 4.7073 5 Median 0.69627 0.85487 4.593 3 0 Median 0.49641 0.801 4.4851 2 0 Median 361490000 225460000 136030000 217280000 129260000 88015000 144210000 96195000 48015000 2891 647 2965 10573;10574;10575;10576;10577 16022;16023;16024;16025;16026;16027;16028;16029;16030;16031 16026 10 ELNEDVSADVEER LHQDCLVLATAKHSRELNEDVSADVEERFH SRELNEDVSADVEERFHLGLFTDRATLYRM R E L E R F 1 1 1 2 0 0 4 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 13 0 1503.6689 B7ZLC9;Q8TEQ6 B7ZLC9 877 889 GEMIN5 Gem-associated protein 5 yes no 2 2.1748E-05 127.52 2 0.42665 0.5982 26.171 2 Median 0.42665 0.5982 26.171 2 0 Median NaN NaN NaN 0 0 Median 7028400 4635200 2393200 7028400 4635200 2393200 0 0 0 2892 924 2966 10578;10579 16032;16033;16034;16035 16032 4 ELNITAAK LLELEMNSDLKAQLRELNITAAKEIEVGGG DLKAQLRELNITAAKEIEVGGGRKAIIIFV R E L A K E 2 0 1 0 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 0 858.48108 P62081;B5MCP9 P62081 42 49 RPS7 40S ribosomal protein S7 yes no 1;2 0.0087454 149.82 5 2 0.89199 1.1346 30.871 7 Median 0.89875 1.1449 5.555 5 0 Median 0.39591 0.63096 0.37745 2 0 Median 425050000 245530000 179510000 283090000 145270000 137820000 141960000 100260000 41696000 2893 1395 2967 10580;10581;10582;10583;10584;10585;10586 16036;16037;16038;16039;16040;16041;16042;16043;16044;16045;16046;16047 16042 12 ELNIVLPEFEK VHIWCPEGMKTSDIKELNIVLPEFEKTHLE SDIKELNIVLPEFEKTHLEHQQRIESKVCK K E L E K T 0 0 1 0 0 0 3 0 0 1 2 1 0 1 1 0 0 0 0 1 0 0 11 0 1329.718 A8K8D2;Q71F23;Q09GN1;A5D8X7 A8K8D2 250 260 CENPU;MLF1IP Centromere protein U yes no 2 0.0065099 86.344 2 0.77277 1.0029 NaN 1 Median 0.77277 1.0029 NaN 1 0 Median NaN NaN NaN 0 0 Median 7460600 4110200 3350400 7460600 4110200 3350400 0 0 0 2894 639 2968 10587;10588 16048;16049 16048 2 ELNLEGTNLDK PVQYDGRQSICVKSRELNLEGTNLDKLAMG VKSRELNLEGTNLDKLAMGLNMTKILSPLL R E L D K L 0 0 2 1 0 0 2 1 0 0 3 1 0 0 0 0 1 0 0 0 0 0 11 0 1244.6248 Q9H5C8 Q9H5C8 98 108 yes yes 2 0.0027179 61.679 2 0.68536 0.88763 NaN 1 Median 0.68536 0.88763 NaN 1 0 Median NaN NaN NaN 0 0 Median 4477700 2539500 1938200 4477700 2539500 1938200 0 0 0 2895 1736 2969 10589;10590 16050;16051 16051 2 ELNLTEHFGK EEVETYFFEGLLKWRELNLTEHFGKFYKEV LLKWRELNLTEHFGKFYKEVIDKCQSFNQL R E L G K F 0 0 1 0 0 0 2 1 1 0 2 1 0 1 0 0 1 0 0 0 0 0 10 0 1186.5982 O75691 O75691 57 66 UTP20 Small subunit processome component 20 homolog yes yes 2 0.014102 80.755 4 0.85814 1.1081 31.694 4 Median 0.85814 1.1081 31.694 4 0 Median NaN NaN NaN 0 0 Median 18383000 9835300 8547800 18383000 9835300 8547800 0 0 0 2896 1207 2970 10591;10592;10593;10594 16052;16053;16054;16055 16054 4 ELNNTCEPVVTQPK QDPVVRAQEIKTKIKELNNTCEPVVTQPKP KELNNTCEPVVTQPKPKIESPKLERTPNGP K E L P K P 0 0 2 0 1 1 2 0 0 0 1 1 0 0 2 0 2 0 0 2 0 0 14 0 1627.7876 A0A024RDQ0;A0A024RDS1;Q92598;B4DF68;A0A0A0MSM0;B4DY72;Q5TBM3 A0A024RDQ0 747 760 HSPH1 Heat shock protein 105 kDa yes no 2 0.0025445 112.64 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 771940 771940 0 771940 771940 0 0 0 0 2897 320 2971 10595 16056 16056 1 ELNNYIMR TMIVQAISLLDDLDKELNNYIMRCREWYGW LLDDLDKELNNYIMRCREWYGWHFPELGKI K E L M R C 0 1 2 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 0 8 0 1051.5121 Q9Y2X3;B3KN82;H7BZ72 Q9Y2X3 175 182 NOP58 Nucleolar protein 58 yes no 2 0.0049042 76.847 1 2 0.44738 0.70808 4.2344 2 Median NaN NaN NaN 0 0 Median 0.44738 0.70808 4.2344 2 0 Median 74670000 53208000 21462000 4623400 4623400 0 70047000 48585000 21462000 2898 1810 2972;2973 10596;10597;10598 16057;16058;16059 16058 836 3 ELNQHLR APVLSDDELVSMSVRELNQHLRGLTKEEVT ELVSMSVRELNQHLRGLTKEEVTRLKQRRR R E L L R G 0 1 1 0 0 1 1 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 908.48281 A0A024R804;A8WFP5;O60675;A0A024R8X1;O15525;I3L2F8 A0A024R804 36 42 MAFK;hCG_1991559;MAFG Transcription factor MafK;Transcription factor MafG no no 2 0.035155 56.51 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2899 188;207 2974 10599 16060 16060 1 ELNQVMEQLGDAR EEVEMAKRRIDEINKELNQVMEQLGDARID NKELNQVMEQLGDARIDRQESSRQQRKAEI K E L A R I 1 1 1 1 0 2 2 1 0 0 2 0 1 0 0 0 0 0 0 1 0 0 13 0 1501.7195 Q14683;G8JLG1;Q6P2R1;Q6MZR8;A8K7A6;B7Z709 Q14683 476 488 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.00081094 55.452 2 0.69755 0.92697 11.49 2 Median NaN NaN NaN 0 0 Median 0.69755 0.92697 11.49 2 0 Median 10572000 5967800 4604000 0 0 0 10572000 5967800 4604000 2900 1492 2975 10600;10601 16061;16062;16063 16062 670 3 ELNSTYSEQDPLLK KVKPYLPMIIAPLFRELNSTYSEQDPLLKN RELNSTYSEQDPLLKNLSQEIIELLKKLVG R E L L K N 0 0 1 1 0 1 2 0 0 0 3 1 0 0 1 2 1 0 1 0 0 0 14 0 1635.7992 O75691;B4DN27 O75691 2677 2690 UTP20 Small subunit processome component 20 homolog yes no 2 2.1103E-20 168.22 4 1 1.0515 1.3623 7.4195 5 Median 1.0545 1.3485 7.13 4 0 Median 0.99926 1.509 NaN 1 0 Median 50841000 24898000 25943000 35102000 16734000 18369000 15739000 8164200 7574500 2901 1207 2976 10602;10603;10604;10605;10606 16064;16065;16066;16067;16068;16069;16070;16071;16072 16067 9 ELNTLCSELHVEPFQEEGETTILQLEK SLKERLIKSISVCQKELNTLCSELHVEPFQ PFQEEGETTILQLEKDLRTQVELMRKQKKE K E L E K D 0 0 1 0 1 2 7 1 1 1 5 1 0 1 1 1 3 0 0 1 0 0 27 0 3185.5438 A0A024RC67;O43663;B4E238 A0A024RC67 75 101 PRC1 Protein regulator of cytokinesis 1 yes no 3 1.7761E-33 152.57 3 0.6797 0.82015 16.209 3 Median 0.6797 0.82015 16.209 3 0 Median NaN NaN NaN 0 0 Median 50858000 28553000 22305000 50858000 28553000 22305000 0 0 0 2902 288 2977 10607;10608;10609 16073;16074;16075;16076;16077;16078;16079 16074 7 ELNVITETQCTLGLTALR LERRDLSHKEKLYLRELNVITETQCTLGLT VITETQCTLGLTALRSDEVIDLMIKEYPAK R E L L R S 1 1 1 0 1 1 2 1 0 1 4 0 0 0 0 0 4 0 0 1 0 0 18 0 2031.067 S5FQ49;S5FZ81;S5FMB0;Q8WUB8 S5FQ49 78 95 PHF10 PHD finger protein 10 yes no 2 6.1587E-10 132.51 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1438100 0 1438100 1438100 0 1438100 0 0 0 2903 1664 2978 10610;10611 16080;16081 16080 2 ELPAAEPVLSPLEGTK TNMSRTLVNKEEPPKELPAAEPVLSPLEGT LPAAEPVLSPLEGTKMTVNNLHPRVTEEDI K E L T K M 2 0 0 0 0 0 3 1 0 0 3 1 0 0 3 1 1 0 0 1 0 0 16 0 1649.8876 Q96DI9;F6VRR5;B4E0L0;Q9BY77;B4DMM2 Q96DI9 262 277 POLDIP3 Polymerase delta-interacting protein 3 yes no 2 5.5689E-16 143.55 5 0.97052 1.2305 20.172 3 Plateau 0.97052 1.2305 20.172 3 0 Plateau NaN NaN NaN 0 0 Median 17997000 7332300 10665000 17997000 7332300 10665000 0 0 0 2904 885 2979 10612;10613;10614;10615;10616 16082;16083;16084;16085;16086;16087 16085 6 ELPDPSQRPLGEPSAGLGEYLK SPGDSSKKRGPKPRKELPDPSQRPLGEPSA RPLGEPSAGLGEYLKGRKLDDTPSGAGKFP K E L L K G 1 1 0 1 0 1 3 3 0 0 4 1 0 0 4 2 0 0 1 0 0 0 22 1 2352.1961 Q9HC52;C9J6K3 Q9HC52 206 227 CBX8 Chromobox protein homolog 8 yes no 3 6.1041E-05 76.329 4 1 0.77818 1.02 7.4748 4 Median 0.77818 1.02 7.4748 4 0 Median NaN NaN NaN 0 0 Median 86752000 51443000 35309000 73494000 38184000 35309000 13258000 13258000 0 2905 1750 2980 10617;10618;10619;10620;10621 16088;16089;16090;16091;16092;16093;16094;16095;16096;16097;16098 16090 11 ELPEPILPADLHEALLK APPCDIAGLLKQFFRELPEPILPADLHEAL PEPILPADLHEALLKAQQLGTEEKNKATLL R E L L K A 2 0 0 1 0 0 3 0 1 1 5 1 0 0 3 0 0 0 0 0 0 0 17 0 1897.0561 H3BR51;Q3KRB8;Q6P4F7 H3BR51 127 143 ARHGAP11A;ARHGAP11B Rho GTPase-activating protein 11B;Rho GTPase-activating protein 11A yes no 3 0.033181 16.494 1 0.95976 1.2124 NaN 1 Median 0.95976 1.2124 NaN 1 0 Median NaN NaN NaN 0 0 Median 7380900 3847400 3533500 7380900 3847400 3533500 0 0 0 2906 1107 2981 10622 16099 16099 1 ELPEPTPVK QWSKPREDMECDDLKELPEPTPVKTRLPPE ECDDLKELPEPTPVKTRLPPEIFGDALMVL K E L V K T 0 0 0 0 0 0 2 0 0 0 1 1 0 0 3 0 1 0 0 1 0 0 9 0 1008.5492 D3DS96;Q9NRL2;Q59G54 D3DS96 409 417 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 0.0225 50.703 2 0.59186 0.88464 4.2033 2 Median NaN NaN NaN 0 0 Median 0.59186 0.88464 4.2033 2 0 Median 18265000 11594000 6671100 0 0 0 18265000 11594000 6671100 2907 979 2982 10623;10624 16100;16101;16102;16103 16103 4 ELPEYYELIR GRQLSEVFIQLPSRKELPEYYELIRKPVDF LPSRKELPEYYELIRKPVDFKKIKERIRNH K E L I R K 0 1 0 0 0 0 3 0 0 1 2 0 0 0 1 0 0 0 2 0 0 0 10 0 1323.6711 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;B4E0F1;B4DSI8;B3KNW7;A0A0U1RRG6;A0A0U1RRF5;A0A0U1RRD6;A0A0U1RRF8;A0A0A0MSS5;F6UH26;A0A0U1RQU0;A0A0U1RR09;F6XE55;A0A0U1RQW7;A0A0U1RRN2;B1ALG1;A0A0U1RR83;A0A0U1RQX3;F6T8Q0;B1ALG2;A0A0U1RR26;B4DNT1;Q8N9Q1;B1ALF6;P51531;F6VDE0;B4DSC8 A7E2E1 1493 1502 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 0.00045667 87.308 3 2 0.71239 0.9533 30.847 5 Median 0.5932 0.81328 10.47 3 0 Median 0.97051 1.4616 2.6548 2 0 Median 67023000 36813000 30210000 31967000 20107000 11860000 35056000 16706000 18350000 2908 403;1362 2983 10625;10626;10627;10628;10629 16104;16105;16106;16107;16108;16109;16110;16111 16106 8 ELPRPVLEGQQSER EELEELGKEECFQNKELPRPVLEGQQSERT KELPRPVLEGQQSERTPNNRPDAPKEKKKK K E L E R T 0 2 0 0 0 2 3 1 0 0 2 0 0 0 2 1 0 0 0 1 0 0 14 1 1636.8533 Q9BVJ6;B4E343;Q08E77;A0A024RDV0;Q5TAP6 Q9BVJ6 527 540 UTP14A;UTP14C;hCG_1811699 U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C yes no 3 3.5815E-18 122.1 3 2 0.90677 1.2568 14.488 5 Median 1.0048 1.3607 7.7656 3 0 Median 0.68907 1.0642 1.0402 2 0 Median 150210000 80712000 69495000 81331000 40054000 41277000 68876000 40658000 28218000 2909 1719 2984 10630;10631;10632;10633;10634 16112;16113;16114;16115;16116;16117;16118;16119 16118 8 ELPTAFDYVEFTR YCVSHMKPYVDGKGRELPTAFDYVEFTRSL GRELPTAFDYVEFTRSLFVN__________ R E L T R S 1 1 0 1 0 0 2 0 0 0 1 0 0 2 1 0 2 0 1 1 0 0 13 0 1586.7617 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1 Q13813 2455 2467 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.039411 59.198 1 0.71249 0.96945 NaN 1 Median 0.71249 0.96945 NaN 1 0 Median NaN NaN NaN 0 0 Median 5556900 2912600 2644200 5556900 2912600 2644200 0 0 0 2910 1476 2985 10635 16120 16120 1 ELPTVVFR VPKENLESWLNYLKKELPTVVFRASTKPKD WLNYLKKELPTVVFRASTKPKDKGKITKRV K E L F R A 0 1 0 0 0 0 1 0 0 0 1 0 0 1 1 0 1 0 0 2 0 0 8 0 959.54402 A0A024R2Z6;Q9BVP2 A0A024R2Z6 186 193 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.0078201 80.462 3 2 0.62146 0.86835 2.1954 5 Median 0.63035 0.86509 0.48498 3 0 Median 0.55603 0.89787 1.2551 2 0 Median 336610000 208980000 127630000 228380000 140800000 87583000 108230000 68182000 40049000 2911 95 2986 10636;10637;10638;10639;10640 16121;16122;16123;16124;16125;16126;16127;16128;16129;16130 16124 10 ELQAQIAELQEDFESEK DDETLHKNNALKVVRELQAQIAELQEDFES QAQIAELQEDFESEKASRNKAEKQKRDLSE R E L E K A 2 0 0 1 0 3 5 0 0 1 2 1 0 1 0 1 0 0 0 0 0 0 17 0 2005.948 P35580 P35580 1115 1131 MYH10 Myosin-10 yes yes 2 8.1858E-26 176.89 3 0.69097 0.88945 16.43 3 Plateau 0.69097 0.88945 16.43 3 0 Plateau NaN NaN NaN 0 0 Median 8036300 4284700 3751600 8036300 4284700 3751600 0 0 0 2912 1320 2987 10641;10642;10643 16131;16132;16133;16134;16135 16133 5 ELQCLTPR ADVIQATGDAICIFRELQCLTPRGRYDIRI DAICIFRELQCLTPRGRYDIRIYPTFLHLH R E L P R G 0 1 0 0 1 1 1 0 0 0 2 0 0 0 1 0 1 0 0 0 0 0 8 0 1015.5121 A0A024R4Z6;Q08945;E9PMD4 A0A024R4Z6 204 211 SSRP1 FACT complex subunit SSRP1 yes no 2 3.789E-06 147.34 4 2 0.76776 1.1072 5.1246 4 Median 0.7748 1.0724 4.6522 3 0 Median 0.74227 1.1631 NaN 1 0 Median 383170000 232790000 150380000 346580000 206570000 140010000 36585000 26213000 10372000 2913 132 2988 10644;10645;10646;10647;10648;10649 16136;16137;16138;16139;16140;16141;16142;16143;16144;16145 16141 10 ELQDAFSR SDSESESDESLVTDRELQDAFSRGLLKPGL ESLVTDRELQDAFSRGLLKPGLNVVLEGPK R E L S R G 1 1 0 1 0 1 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 8 0 964.46141 Q6IB29;H7C2Q8;Q99848;B4DHA6;B4DRX8 Q6IB29 22 29 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 0.0096141 89.752 3 1 1.0094 1.3565 2.4145 2 Median 1.0094 1.3565 2.4145 2 0 Median NaN NaN NaN 0 0 Median 44218000 21033000 23185000 37057000 13872000 23185000 7161200 7161200 0 2914 1123 2989 10650;10651;10652;10653 16146;16147;16148;16149 16148 4 ELQEVIQQQNEK EKLNQALCLRYKNEKELQEVIQQQNEKILE NEKELQEVIQQQNEKILEQIDKSGELISLR K E L E K I 0 0 1 0 0 4 3 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 12 0 1484.7471 A8K8N3;Q96R06;K7ELG0 A8K8N3 1043 1054 SPAG5 Sperm-associated antigen 5 yes no 2 0.0095512 66.19 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3276700 3276700 0 3276700 3276700 0 0 0 0 2915 642 2990 10654 16150 16150 1 ELQGDGPPSSPTNDPTVK GEDPAQPRKYKKKKKELQGDGPPSSPTNDP GDGPPSSPTNDPTVKYETQPRFITATGGTL K E L V K Y 0 0 1 2 0 1 1 2 0 0 1 1 0 0 4 2 2 0 0 1 0 0 18 0 1837.8694 Q12873 Q12873 704 721 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes yes 2 0.001125 100.18 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2916 1458 2991 10655;10656 16151;16152 16152 2 ELQIPALSTR QEDKEPISENIEVSKELQIPALSTRDNENQ IEVSKELQIPALSTRDNENQCDYRTQNVLG K E L T R D 1 1 0 0 0 1 1 0 0 1 2 0 0 0 1 1 1 0 0 0 0 0 10 0 1126.6346 Q562F6;B7Z7S9 Q562F6 666 675 SGOL2 Shugoshin-like 2 yes no 2 0.034956 83.883 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2917 1546 2992 10657;10658;10659 16153;16154;16155 16153 3 ELQISLK CTERHPAEWRLALEKELQISLKQVLTALLN EWRLALEKELQISLKQVLTALLNSRTTSHL K E L L K Q 0 0 0 0 0 1 1 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 7 0 829.49092 Q03164;H7BYJ6 Q03164 1639 1645 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 0.015405 89.55 3 1.2556 1.586 NaN 1 Median 1.2556 1.586 NaN 1 0 Median NaN NaN NaN 0 0 Median 11715000 2259200 9455800 11715000 2259200 9455800 0 0 0 2918 1438 2993 10660;10661;10662 16156;16157;16158 16157 3 ELQLIPDQLR SELPVLSDSERDMKKELQLIPDQLRHLGNA RDMKKELQLIPDQLRHLGNAIKQVTMKKDY K E L L R H 0 1 0 1 0 2 1 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 10 0 1223.6874 B4DP20;J3KMX1;Q99567 B4DP20 549 558 NUP88 Nuclear pore complex protein Nup88 yes no 2 0.051156 70.256 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 638520 638520 0 638520 638520 0 0 0 0 2919 844 2994 10663 16159 16159 1 ELQLLNDKVETEQAEIQELK NVVAETLSALENKEKELQLLNDKVETEQAE NDKVETEQAEIQELKKSNHLLEDSLKELQL K E L L K K 1 0 1 1 0 3 5 0 0 1 4 2 0 0 0 0 1 0 0 1 0 0 20 1 2369.2326 P49454 P49454 912 931 CENPF Centromere protein F yes yes 3 3.9451E-05 106.57 2 1.1035 1.3576 NaN 1 Median 1.1035 1.3576 NaN 1 0 Median NaN NaN NaN 0 0 Median 9431600 2679900 6751600 9431600 2679900 6751600 0 0 0 2920 1351 2995 10664;10665 16160;16161 16160 2 ELQLLSETLSLEK QELKKSNHLLEDSLKELQLLSETLSLEKKE LKELQLLSETLSLEKKEMSSIISLNKREIE K E L E K K 0 0 0 0 0 1 3 0 0 0 5 1 0 0 0 2 1 0 0 0 0 0 13 0 1501.8239 P49454 P49454 943 955 CENPF Centromere protein F yes yes 2 1.0669E-12 162.68 3 2 1.0043 1.2757 12.932 4 Median 0.96562 1.3185 4.5182 3 0 Plateau 1.1489 1.6109 NaN 1 0 Median 23459000 10192000 13267000 15228000 7594200 7633300 8231400 2598000 5633300 2921 1351 2996 10666;10667;10668;10669;10670 16162;16163;16164;16165;16166;16167 16164 6 ELQPVVSHQETSVGALGSLCR RRRSLQHQEQLEDSKELQPVVSHQETSVGA SHQETSVGALGSLCRQFQRRLPLRAVNLNL K E L C R Q 1 1 0 0 1 2 2 2 1 0 3 0 0 0 1 3 1 0 0 3 0 0 21 0 2266.1376 I3L427;A0A0S2Z5C7;I3L419;A0A0S2Z5F0;I3L156;Q9BSJ6 I3L427 28 48 FAM64A Protein FAM64A yes no 3 0.0031334 33.127 2 1.2634 1.7318 9.4155 2 Median 1.2634 1.7318 9.4155 2 0 Median NaN NaN NaN 0 0 Median 5395100 2902900 2492200 5395100 2902900 2492200 0 0 0 2922 479 2997 10671;10672 16168;16169 16169 2 ELQSAVPR LRLQPHPQLSPEIRRELQSAVPRDVEDVPI LSPEIRRELQSAVPRDVEDVPITVE_____ R E L P R D 1 1 0 0 0 1 1 0 0 0 1 0 0 0 1 1 0 0 0 1 0 0 8 0 898.48723 Q13895 Q13895 420 427 BYSL Bystin yes yes 2 0.029593 51.787 1 1.1095 1.4666 NaN 1 Median NaN NaN NaN 0 0 Median 1.1095 1.4666 NaN 1 0 Median 5392300 2694200 2698100 0 0 0 5392300 2694200 2698100 2923 1480 2998 10673 16170 16170 1 ELQSQISDTSVVLSMDNSR DEINFLRQLYEEEIRELQSQISDTSVVLSM QISDTSVVLSMDNSRSLDMDSIIAEVKAQY R E L S R S 0 1 1 2 0 2 1 0 0 1 2 0 1 0 0 5 1 0 0 2 0 0 19 0 2108.0056 CON__P05787;P05787;Q969I0;F8VUG2;Q7L4M3;CON__H-INV:HIT000292931 CON__P05787 234 252 KRT8 Keratin, type II cytoskeletal 8 yes no 2 6.7798E-18 158.81 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1236700 1236700 0 1236700 1236700 0 0 0 0 + 2924 955 2999 10674 16171;16172 16171 2 ELQTLHNLRK QARQDLKGLEETVAKELQTLHNLRKLFVQD ETVAKELQTLHNLRKLFVQDLATRVKKSAE K E L R K L 0 1 1 0 0 1 1 0 1 0 3 1 0 0 0 0 1 0 0 0 0 0 10 1 1250.7095 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;M1V490;M1VPF9;B4DS27;A0A0G2JMZ6;A1L179;B2RCP3;O60282;Q12840;J3KNA1;B7Z2M7;B0I1S7;Q57Z91;Q59GB8 V9HW29 792 801 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5B-RET(NM_020630)_K22;R12;KIF5B-RET(NM_020975)_K22;R12;KIF5C;KIF5A Kinesin-like protein;Kinesin-1 heavy chain;Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A yes no 3 0.0089016 80.755 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2925 978 3000 10675 16173 16173 1 ELRENTQTTIK SLAGGIIGVKGAKIKELRENTQTTIKLFQE AKIKELRENTQTTIKLFQECCPHSTDRVVL K E L I K L 0 1 1 0 0 1 2 0 0 1 1 1 0 0 0 0 3 0 0 0 0 0 11 1 1331.7045 A0A024R228;P61978;B4DUQ1;Q5EC54;Q5T6W2;B4DFF1 A0A024R228 169 179 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 2;3 2.9973E-06 119.27 4 1 0.35157 0.4629 102.4 5 Median 0.34025 0.44923 7.5358 4 0 Median 2.8083 4.35 NaN 1 0 Median 107750000 76112000 31634000 102090000 74308000 27785000 5652800 1803700 3849100 2926 77 3001 10676;10677;10678;10679;10680 16174;16175;16176;16177;16178;16179;16180;16181 16180 8 ELREVIELPLTNPELFQR NVSYSEIGGLSEQIRELREVIELPLTNPEL EVIELPLTNPELFQRVGIIPPKGCLLYGPP R E L Q R V 0 2 1 0 0 1 4 0 0 1 4 0 0 1 2 0 1 0 0 1 0 0 18 1 2195.195 V9HW24;A0A087X2I1;P62333;H0YJC0;H0YJS8;B4DR91 V9HW24 144 161 HEL-S-73;PSMC6 26S protease regulatory subunit 10B yes no 3 0.044529 15.254 1 0.31685 0.41895 NaN 1 Median 0.31685 0.41895 NaN 1 0 Median NaN NaN NaN 0 0 Median 6014200 4259400 1754800 6014200 4259400 1754800 0 0 0 2927 379 3002 10681 16182 16182 1 ELRGEIFPSRDPITTAGQPLPGER ITRQTLKNMLDKEVKELRGEIFPSRDPITT RDPITTAGQPLPGERLEIYVQSKMDEKNAH K E L E R L 1 3 0 1 0 1 3 3 0 2 2 0 0 1 4 1 2 0 0 0 0 0 24 2 2635.3718 A0A1B0GUH9;A0A1P0AZG4;A0PJI9 A0A1B0GUH9 894 917 C10orf12 yes no 4 0.038893 33.37 1 0.87498 1.0988 NaN 1 Median 0.87498 1.0988 NaN 1 0 Median NaN NaN NaN 0 0 Median 2890800 1333200 1557600 2890800 1333200 1557600 0 0 0 2928 517 3003 10682 16183 16183 0 ELSAALQDKK KATQEWLEKQAQLEKELSAALQDKKCLEEK AQLEKELSAALQDKKCLEEKNEILQGKLSQ K E L K K C 2 0 0 1 0 1 1 0 0 0 2 2 0 0 0 1 0 0 0 0 0 0 10 1 1101.603 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 365 374 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 6.6087E-05 98.009 3 2 0.43771 0.61199 39.416 4 Median 0.72072 0.88988 14.759 2 0 Median 0.28913 0.45724 3.038 2 0 Median 63156000 42356000 20800000 40726000 25527000 15199000 22430000 16830000 5600400 2929 148;1499;590 3004 10683;10684;10685;10686;10687 16184;16185;16186;16187;16188;16189;16190;16191;16192 16189 9 ELSDSVTLSSSDR DPILVQTLWQDIIEKELSDSVTLSSSDRMH EKELSDSVTLSSSDRMHALSLKIVLLGKIY K E L D R M 0 1 0 2 0 0 1 0 0 0 2 0 0 0 0 5 1 0 0 1 0 0 13 0 1394.6525 B4DLT2;A0A024R071;O75694;E9PF10;B3KMK3 B4DLT2 1190 1202 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.0096725 56.359 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2930 29 3005 10688 16193 16193 1 ELSEALTR VLPLSQNQEFMPFVKELSEALTRHGVSHKV EFMPFVKELSEALTRHGVSHKVDDSSGSIG K E L T R H 1 1 0 0 0 0 2 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 8 0 917.48181 A0A090N8G0;P41250 A0A090N8G0 579 586 GARS Glycine--tRNA ligase yes no 2 0.045877 43.218 1 0.83623 1.1594 NaN 1 Median 0.83623 1.1594 NaN 1 0 Median NaN NaN NaN 0 0 Median 4275500 2171300 2104200 4275500 2171300 2104200 0 0 0 2931 382 3006 10689 16194 16194 1 ELSEMRAPPAATNSSK MWIKKAAEDQKRYERELSEMRAPPAATNSS LSEMRAPPAATNSSKKMKFQGEPKKPPMNG R E L S K K 3 1 1 0 0 0 2 0 0 0 1 1 1 0 2 3 1 0 0 0 0 0 16 1 1687.8199 E9PKP7;P17480;A8K962;B4DNQ1;O00164;B4DLB0;E9PLT2 E9PKP7 507 522 UBTF Nucleolar transcription factor 1 yes no 3 0.00026548 49.343 1 0.57631 0.89448 NaN 1 Median NaN NaN NaN 0 0 Median 0.57631 0.89448 NaN 1 0 Median 5746500 3509800 2236700 0 0 0 5746500 3509800 2236700 2932 1039 3007 10690 16195 16195 372 1 ELSENTPHLSDEALMGLSVR MSVDPLSSKALKIKRELSENTPHLSDEALM TPHLSDEALMGLSVRELNRHLRGLSAEEVT R E L V R E 1 1 1 1 0 0 3 1 1 0 4 0 1 0 1 3 1 0 0 1 0 0 20 0 2197.0685 Q9ULX9;B0QY70 Q9ULX9 16 35 MAFF Transcription factor MafF yes no 3 5.7381E-06 55.337 1 1.2661 1.9892 NaN 1 Median NaN NaN NaN 0 0 Median 1.2661 1.9892 NaN 1 0 Median 24520000 10530000 13990000 0 0 0 24520000 10530000 13990000 2933 1793 3008 10691 16196 16196 829 1 ELSEQLGQAER RLSVEDAVKVGLVGRELSEQLGQAERAAAG LVGRELSEQLGQAERAAAGYPDPYSRASLS R E L E R A 1 1 0 0 0 2 3 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 11 0 1258.6153 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 1312 1322 EPPK1 Epiplakin no no 2 0.0010255 73.985 2 0.54191 0.73411 NaN 1 Median 0.54191 0.73411 NaN 1 0 Median NaN NaN NaN 0 0 Median 11286000 5110200 6175700 11286000 5110200 6175700 0 0 0 2934 373;1386 3009 10692;10693 16197;16198 16197 2 ELSESVQQQSTPVPLISPK LNLNLDRSKAEMDLKELSESVQQQSTPVPL SVQQQSTPVPLISPKRQIRSRFQLNLDKTI K E L P K R 0 0 0 0 0 3 2 0 0 1 2 1 0 0 3 4 1 0 0 2 0 0 19 0 2066.0895 A0A087WYS3;H7C4X9;A0A087WVZ6;Q9ULU4;A0A087WV57;A6H8Y8;Q5JV90 A0A087WYS3 531 549 ZMYND8;DKFZp564P1772 Protein kinase C-binding protein 1 yes no 2 1.3334E-18 141.59 4 0.70971 0.9053 24.004 3 Median 0.70971 0.9053 24.004 3 0 Median NaN NaN NaN 0 0 Median 11238000 7191400 4046700 11238000 7191400 4046700 0 0 0 2935 365 3010 10694;10695;10696;10697 16199;16200;16201;16202 16199 4 ELSFVLDYINQSPK SVKLPKSSSQEVEAKELSFVLDYINQSPKC KELSFVLDYINQSPKCIAFGNEGVYVAAVR K E L P K C 0 0 1 1 0 1 1 0 0 1 2 1 0 1 1 2 0 0 1 1 0 0 14 0 1651.8457 A8K330;Q8IWA0 A8K330 146 159 WDR75 WD repeat-containing protein 75 yes no 2 8.4578E-50 225.93 5 0.92225 1.1314 5.9375 4 Median 0.92225 1.1314 5.9375 4 0 Median NaN NaN NaN 0 0 Median 88488000 47410000 41078000 88488000 47410000 41078000 0 0 0 2936 588 3011 10698;10699;10700;10701;10702 16203;16204;16205;16206;16207;16208;16209;16210;16211 16204 9 ELSLAGNELGDEGAR CGDLCRVLRAKESLKELSLAGNELGDEGAR ELSLAGNELGDEGARLLCETLLEPGCQLES K E L A R L 2 1 1 1 0 0 3 3 0 0 3 0 0 0 0 1 0 0 0 0 0 0 15 0 1529.7322 H0YCR7;A0A024RC87;A0A140VJT8;P13489 H0YCR7 82 96 RNH1 Ribonuclease inhibitor yes no 2 0.024307 45.077 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2937 290 3012 10703 16212 16212 1 ELSLDDPEVEQVSGR SVNEKIRDRLPVNVRELSLDDPEVEQVSGR ELSLDDPEVEQVSGRGLPDDHAGPIRVVNI R E L G R G 0 1 0 2 0 1 3 1 0 0 2 0 0 0 1 2 0 0 0 2 0 0 15 0 1671.7952 L7N2F4;C9J5N1;B3KSP9;Q9BTE6 L7N2F4 67 81 AARSD1;PTGES3L-AARSD1 Alanyl-tRNA editing protein Aarsd1 yes no 2 6.7155E-06 106.26 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2200700 908390 1292300 908390 908390 0 1292300 0 1292300 2938 776 3013 10704;10705;10706 16213;16214;16215;16216 16214 4 ELSPLFLR RALTKFPERVEPRSRELSPLFLRFINNEYY RVEPRSRELSPLFLRFINNEYYPADLQVAP R E L L R F 0 1 0 0 0 0 1 0 0 0 3 0 0 1 1 1 0 0 0 0 0 0 8 0 973.55967 O75691 O75691 841 848 UTP20 Small subunit processome component 20 homolog yes yes 2 0.043542 44.447 2 0.89473 1.2531 13.96 2 Median NaN NaN NaN 0 0 Median 0.89473 1.2531 13.96 2 0 Median 13263000 6787100 6475900 0 0 0 13263000 6787100 6475900 2939 1207 3014 10707;10708 16217;16218 16218 2 ELSQLQAAQEK KSCKQLEEEKEILQKELSQLQAAQEKQKTG ILQKELSQLQAAQEKQKTGTVMDTKVDELT K E L E K Q 2 0 0 0 0 3 2 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 11 0 1243.6408 P49454 P49454 2911 2921 CENPF Centromere protein F yes yes 2 1.4064E-18 192.64 4 1 0.80602 1.0229 3.5282 3 Median 0.80602 1.0229 3.5282 3 0 Median NaN NaN NaN 0 0 Median 28764000 11850000 16914000 24679000 11850000 12829000 4084800 0 4084800 2940 1351 3015 10709;10710;10711;10712;10713 16219;16220;16221;16222;16223;16224;16225 16219 7 ELSQNTDESGLNDEAIAK SVQRSNKKMVASKRKELSQNTDESGLNDEA QNTDESGLNDEAIAKQLQLDEDAELERQLH K E L A K Q 2 0 2 2 0 1 3 1 0 1 2 1 0 0 0 2 1 0 0 0 0 0 18 0 1932.8912 P35251;Q14756 P35251 188 205 RFC1;LLDBP Replication factor C subunit 1 yes no 2 1.2722E-07 101.38 4 2 0.61822 0.8667 16.329 4 Median 0.58711 0.75266 12.507 2 0 Median 0.63587 0.96032 7.0611 2 0 Median 43922000 30307000 13614000 11269000 9484200 1784600 32653000 20823000 11830000 2941 1318 3016 10714;10715;10716;10717;10718;10719 16226;16227;16228;16229;16230;16231;16232;16233 16231 7 ELSTTLNADEAVTR RIPAVKEKISKFFGKELSTTLNADEAVTRG KELSTTLNADEAVTRGCALQCAILSPAFKV K E L T R G 2 1 1 1 0 0 2 0 0 0 2 0 0 0 0 1 3 0 0 1 0 0 14 0 1518.7526 O14992;A0A087WTS8;B4E0H6;B4E354;B4DT47;A0A087WYC1;B4DIZ3;B4DUS3;Q59GF8;V9HW33;B4DH02;P34932 O14992 361 374 HS24/p52;HSPA4;HEL-S-5a Heat shock 70 kDa protein 4 yes no 2 2.8003E-05 116.84 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2942 336 3017 10720 16234 16234 1 ELSVEEQIK QKSQDVELWEGEVVKELSVEEQIKRNRYYD EGEVVKELSVEEQIKRNRYYDEDEDEE___ K E L I K R 0 0 0 0 0 1 3 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 9 0 1073.5605 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2 F8VQE1 578 586 LIMA1 LIM domain and actin-binding protein 1 yes no 2 0.00038317 139.97 5 1 0.74842 0.96196 38.357 5 Median 0.74587 0.95991 0.68462 4 0 Median 1.4967 2.2681 NaN 1 0 Median 306380000 179190000 127190000 296990000 175410000 121580000 9395500 3788800 5606700 2943 834 3018 10721;10722;10723;10724;10725;10726 16235;16236;16237;16238;16239;16240;16241;16242;16243;16244 16237 10 ELTAPDENIPAK FRTYNASITLQQQLKELTAPDENIPAKILS QLKELTAPDENIPAKILSYNRANRAVAILC K E L A K I 2 0 1 1 0 0 2 0 0 1 1 1 0 0 2 0 1 0 0 0 0 0 12 0 1296.6561 P11387;B9EG90;Q9BVT2 P11387 604 615 TOP1 DNA topoisomerase 1 yes no 2 9.4919E-08 125.71 4 2 0.81132 1.0621 15.588 6 Median 0.77112 1.0166 6.6723 4 0 Median 0.84752 1.3355 2.3476 2 0 Median 1794600000 985870000 808720000 1197700000 668930000 528750000 596910000 316940000 279970000 2944 1255 3019 10727;10728;10729;10730;10731;10732 16245;16246;16247;16248;16249;16250;16251;16252;16253;16254;16255;16256;16257;16258 16248 14 ELTAVVQK TRTQNVLGEKGRRIRELTAVVQKRFGFPEG EKGRRIRELTAVVQKRFGFPEGSVELYAEK R E L Q K R 1 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 8 0 886.51238 P23396;Q53G83;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;H0YF32;A7E2S3;E9PQ96;E9PJH4;E9PK82 P23396 68 75 RPS3 40S ribosomal protein S3 yes no 2 0.0058655 87.284 2 1 0.89895 1.1231 62.094 3 Median 0.82181 1.0252 12.897 2 0 Median 1.9718 2.9705 NaN 1 0 Median 115330000 58197000 57136000 97593000 52245000 45348000 17740000 5952100 11788000 2945 1293 3020 10733;10734;10735 16259;16260;16261;16262 16260 4 ELTCQILEQK LENVFDDVQKTLQEKELTCQILEQKIKELD TLQEKELTCQILEQKIKELDSCLVRQKEVH K E L Q K I 0 0 0 0 1 2 2 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 10 0 1260.6384 H0Y6I0;Q13439;A0A076NA11 H0Y6I0 1717 1726 GOLGA4;CRPF46 Golgin subfamily A member 4 yes no 2 0.038814 40.045 1 0.73614 0.93553 NaN 1 Median 0.73614 0.93553 NaN 1 0 Median NaN NaN NaN 0 0 Median 12248000 6809700 5438200 12248000 6809700 5438200 0 0 0 2946 1093 3021 10736 16263;16264 16263 2 ELTFCRKMGLR VVTTPQAVSVGDVRRELTFCRKMGLRVMGI DVRRELTFCRKMGLRVMGIVENMSGFTCPH R E L L R V 0 2 0 0 1 0 1 1 0 0 2 1 1 1 0 0 1 0 0 0 0 0 11 2 1409.7272 B2RDN3 B2RDN3 173 183 NUBP2 Cytosolic Fe-S cluster assembly factor NUBP2 yes yes 3 0.040773 24.291 1 1.0709 1.2799 NaN 1 Median 1.0709 1.2799 NaN 1 0 Median NaN NaN NaN 0 0 Median 293970000 146640000 147330000 293970000 146640000 147330000 0 0 0 2947 737 3022 10737 16265 16265 1 ELTGGGTTFSVR CAQKAGLYMKMEPVKELTGGGTTFSVRKTA PVKELTGGGTTFSVRKTAYCDVHTPPGCTR K E L V R K 0 1 0 0 0 0 1 3 0 0 1 0 0 1 0 1 3 0 0 1 0 0 12 0 1223.6146 Q86X06;A0A024R4V5;B4E3L9;A0A024R4W4;O95696;J3KQ61;B4DZ41 Q86X06 369 380 BRD1 Bromodomain-containing protein 1 yes no 2 6.4527E-12 125.48 3 2 0.99656 1.4104 7.2429 4 Median 1.0501 1.4104 4.0352 2 0 Median 0.94014 1.3495 11.026 2 0 Median 33145000 13145000 20000000 17380000 5975200 11405000 15764000 7169500 8594900 2948 128 3023 10738;10739;10740;10741;10742 16266;16267;16268;16269;16270;16271 16269 6 ELTLENSELKK QLLLEEIKSSKDQLKELTLENSELKKSLDC DQLKELTLENSELKKSLDCMHKDQVEKEGK K E L K K S 0 0 1 0 0 0 3 0 0 0 3 2 0 0 0 1 1 0 0 0 0 0 11 1 1302.7031 P49454;Q9UHT7;A0A087WTY4 P49454 2762 2772 CENPF Centromere protein F yes no 2 0.00074114 112.11 2 1 0.80201 0.96832 33.821 3 Median 0.69167 0.8489 18.614 2 0 Median 1.029 1.4561 NaN 1 0 Median 10327000 5702000 4624800 7753200 4470300 3282900 2573700 1231800 1341900 2949 1351 3024 10743;10744;10745 16272;16273;16274 16273 3 ELTLLGK IMDKHLKRKAMTKKKELTLLGKPKRPRSAY RKAMTKKKELTLLGKPKRPRSAYNVYVAER K E L G K P 0 0 0 0 0 0 1 1 0 0 3 1 0 0 0 0 1 0 0 0 0 0 7 0 772.46945 Q6LES8;E5KSX8;E5KSU5;Q00059;H7BYN3 Q6LES8 148 154 TFAM Transcription factor A, mitochondrial yes no 2 0.020089 86.512 2 0.76782 0.96273 0.54319 2 Median 0.76782 0.96273 0.54319 2 0 Median NaN NaN NaN 0 0 Median 22407000 11812000 10594000 22407000 11812000 10594000 0 0 0 2950 1002 3025 10746;10747 16275;16276 16276 2 ELTNQQEASVER KKYRQLTAHLQDVNRELTNQQEASVERQQQ VNRELTNQQEASVERQQQPPPETFDFKIKF R E L E R Q 1 1 1 0 0 2 3 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 12 0 1402.6688 Q6AWB3;Q6AWB1;E7EX90;Q6MZZ3;Q14203;O95654;Q59F36;H8Y0Y3 Q6AWB3 496 507 DKFZp686E191;DKFZp686E0752;DCTN1;DKFZp686I0746;DCTN1/ALK fusion Dynactin subunit 1 yes no 2 0.0099905 105.17 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 403070 403070 0 403070 403070 0 0 0 0 2951 1018 3026 10748;10749 16277;16278 16277 2 ELTTEIDNNIEQISSYK QNRKDAEAWFNEKSKELTTEIDNNIEQISS TTEIDNNIEQISSYKSEITELRRNVQALEI K E L Y K S 0 0 2 1 0 1 3 0 0 3 1 1 0 0 0 2 2 0 1 0 0 0 17 0 1995.9637 CON__P13645;P13645 CON__P13645 346 362 KRT10 Keratin, type I cytoskeletal 10 yes no 2 2.1045E-170 286.29 3 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 768310000 768310000 0 187330000 187330000 0 580970000 580970000 0 + 2952 960 3027 10750;10751;10752;10753;10754;10755;10756 16279;16280;16281;16282;16283;16284;16285;16286 16280 8 ELTVDNSFEFEK RKVRWTKAFRKAAGKELTVDNSFEFEKRRN AGKELTVDNSFEFEKRRNEPIKYQR_____ K E L E K R 0 0 1 1 0 0 3 0 0 0 1 1 0 2 0 1 1 0 0 1 0 0 12 0 1456.6722 H3BMQ2;B3KP47;A0A024R5U8;Q9UHA3 H3BMQ2 45 56 RSL24D1;C15orf15 Probable ribosome biogenesis protein RLP24 yes no 2 1.4623E-12 164.97 4 2 0.87445 1.1206 4.3422 6 Median 0.90656 1.1424 4.4887 4 0 Median 0.68042 1.0894 3.5576 2 0 Median 270230000 151690000 118540000 164420000 84997000 79421000 105810000 66694000 39120000 2953 150 3028 10757;10758;10759;10760;10761;10762 16287;16288;16289;16290;16291;16292;16293;16294;16295;16296;16297;16298 16291 12 ELVEPVSR PYPSVLNEEQTQFLKELVEPVSRFFEEVND EQTQFLKELVEPVSRFFEEVNDPAKNDALE K E L S R F 0 1 0 0 0 0 2 0 0 0 1 0 0 0 1 1 0 0 0 2 0 0 8 0 927.50255 B3KPA6;Q53HR2;B4DEA8;P49748;K7EQP4;B4DYY0;J3KS89;K7EJW8 B3KPA6 28 35 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.016714 62.464 1 1.0766 1.4298 NaN 1 Median NaN NaN NaN 0 0 Median 1.0766 1.4298 NaN 1 0 Median 5435600 2318000 3117600 0 0 0 5435600 2318000 3117600 2954 763 3029 10763 16299 16299 1 ELVGEFLQFVQLDK ______________________________ KELVGEFLQFVQLDKEASDPFSLNELLDEL K E L D K E 0 0 0 1 0 2 2 1 0 0 3 1 0 2 0 0 0 0 0 2 0 0 14 0 1663.8821 Q86XI2;B3KRQ2;F8WE06 Q86XI2 14 27 NCAPG2 Condensin-2 complex subunit G2 yes no 2 1.0863E-65 208.74 3 0.67734 0.85528 24.18 3 Median 0.67734 0.85528 24.18 3 0 Median NaN NaN NaN 0 0 Median 88923000 53945000 34978000 88923000 53945000 34978000 0 0 0 2955 1621 3030 10764;10765;10766 16300;16301;16302;16303;16304;16305 16302 6 ELVLALYDYQEK SCRQQVAPTDDETGKELVLALYDYQEKSPR TGKELVLALYDYQEKSPREVTMKKGDILTL K E L E K S 1 0 0 1 0 1 2 0 0 0 3 1 0 0 0 0 0 0 2 1 0 0 12 0 1482.7606 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 970 981 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 1.0833E-07 119.16 2 1.2645 1.5905 45.455 2 Median 1.2645 1.5905 45.455 2 0 Median NaN NaN NaN 0 0 Median 31752000 16280000 15473000 31752000 16280000 15473000 0 0 0 2956 1476 3031 10767;10768 16306;16307 16306 2 ELVPSSDPIVFVVGAFAHGK KVGTSFSIPVVSDVRELVPSSDPIVFVVGA SDPIVFVVGAFAHGKVSVEYTEKMVSISNY R E L G K V 2 0 0 1 0 0 1 2 1 1 1 1 0 2 2 2 0 0 0 4 0 0 20 0 2068.0993 A8K6D2;Q92979;B4DQC7;V9GYP5;A0A087WWQ2 A8K6D2 188 207 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 2;3 2.5947E-18 97.32 4 1.0434 1.3138 26.806 4 Median 1.0434 1.3138 26.806 4 0 Median NaN NaN NaN 0 0 Median 206650000 99195000 107460000 206650000 99195000 107460000 0 0 0 2957 623 3032 10769;10770;10771;10772 16308;16309;16310;16311;16312;16313 16309 6 ELVQIASGDVFAQVK E L V K 2 0 0 1 0 2 1 1 0 1 1 1 0 1 0 1 0 0 0 3 0 0 15 0 1602.8617 REV__C9IZC3 yes no 2 0.0014 84.188 2 0.64775 0.80806 2.5285 2 Median 0.64775 0.80806 2.5285 2 0 Median NaN NaN NaN 0 0 Median 28655000 18108000 10547000 28655000 18108000 10547000 0 0 0 + 2958 1836 3033 10773;10774 16314;16315;16316;16317 16317 4 ELVREVNR E L N R 0 2 1 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 8 1 1013.5618 REV__B4E278 yes no 3 0.013745 41.029 1 0.83233 1.0697 NaN 1 Median 0.83233 1.0697 NaN 1 0 Median NaN NaN NaN 0 0 Median 6284200 3889000 2395200 6284200 3889000 2395200 0 0 0 + 2959 1849 3034 10775 16318 16318 1 ELVSDLSSQFVISPPALR RKAKAKKIEVPAQLKELVSDLSSQFVISPP SDLSSQFVISPPALRSRQKNTSNKNKLEDE K E L L R S 1 1 0 1 0 1 1 0 0 1 3 0 0 1 2 4 0 0 0 2 0 0 18 0 1957.052 Q8WYP5;B3KRD0 Q8WYP5 2142 2159 AHCTF1 Protein ELYS yes no 2 1.0908E-18 175.21 4 0.55713 0.75205 20.826 3 Median 0.55713 0.75205 20.826 3 0 Median NaN NaN NaN 0 0 Median 14140000 10052000 4088800 14140000 10052000 4088800 0 0 0 2960 1670 3035 10776;10777;10778;10779 16319;16320;16321;16322;16323;16324 16319 6 ELVSSSSSGSDSDSEVDK ______________________________ SSSSSGSDSDSEVDKKLKRKKQVAPEKPVK K E L D K K 0 0 0 3 0 0 2 1 0 0 1 1 0 0 0 8 0 0 0 2 0 0 18 0 1813.7701 Q6IBA2;Q59G24;P53999;B7Z1Z0;D6RC37;D6R970 Q6IBA2 6 23 PC4;SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes no 2 2.7004E-143 292.12 5 2 0.30536 0.39159 48.797 6 Median 0.2628 0.33348 33.952 4 0 Median 0.43971 0.67527 0.94767 2 0 Median 75772000 55027000 20745000 26739000 21207000 5532000 49033000 33820000 15213000 2961 1372 3036 10780;10781;10782;10783;10784;10785;10786 16325;16326;16327;16328;16329;16330;16331;16332;16333;16334;16335;16336 16325 12 ELVSSSSSGSDSDSEVDKK ______________________________ SSSSGSDSDSEVDKKLKRKKQVAPEKPVKK K E L K K L 0 0 0 3 0 0 2 1 0 0 1 2 0 0 0 8 0 0 0 2 0 0 19 1 1941.8651 Q6IBA2;Q59G24;P53999;B7Z1Z0;D6RC37;D6R970 Q6IBA2 6 24 PC4;SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes no 2;3 1.7637E-39 194.55 7 4 0.35196 0.55645 48.968 7 Median 0.20133 0.25077 21.877 3 0 Median 0.37663 0.60027 5.6034 4 0 Median 93780000 73894000 19886000 40446000 34845000 5600900 53334000 39049000 14285000 2962 1372 3037 10787;10788;10789;10790;10791;10792;10793;10794;10795;10796;10797 16337;16338;16339;16340;16341;16342;16343;16344;16345;16346;16347;16348;16349;16350;16351 16349 15 ELVVTQLGYDTR AIDTQNKPITSEKIKELVVTQLGYDTRVTI KIKELVVTQLGYDTRVTILGHVQRGGTPSA K E L T R V 0 1 0 1 0 1 1 1 0 0 2 0 0 0 0 0 2 0 1 2 0 0 12 0 1392.7249 Q01813;B1APP6;V9GY25 Q01813 290 301 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2 0.0006742 112.85 3 0.6433 0.87104 13.062 2 Median 0.6433 0.87104 13.062 2 0 Median NaN NaN NaN 0 0 Median 27171000 20314000 6857100 27171000 20314000 6857100 0 0 0 2963 1434 3038 10798;10799;10800 16352;16353;16354 16353 3 ELVYPPDYNPEGK EAMNKRLGSLVDEFKELVYPPDYNPEGKVT FKELVYPPDYNPEGKVTKRKHDNEGSGSKR K E L G K V 0 0 1 1 0 0 2 1 0 0 1 1 0 0 3 0 0 0 2 1 0 0 13 0 1519.7195 A0A024R1N4;P12956;B1AHC9;B4DE32;B4E356;Q6IC76 A0A024R1N4 527 539 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 2 1.0859E-05 112.64 4 2 0.52876 0.71781 11.973 6 Median 0.53365 0.68856 6.0211 4 0 Median 0.52876 0.84437 2.422 2 0 Median 329860000 212170000 117700000 242560000 153700000 88860000 87305000 58467000 28838000 2964 62 3039 10801;10802;10803;10804;10805;10806 16355;16356;16357;16358;16359;16360;16361;16362;16363;16364;16365;16366;16367;16368;16369;16370;16371;16372;16373;16374;16375 16364 21 ELYANVVLGDDSLNDCR YDAEISRKRETRTARELYANVVLGDDSLND YANVVLGDDSLNDCRIIFVDEVFKIERPGE R E L C R I 1 1 2 3 1 0 1 1 0 0 3 0 0 0 0 1 0 0 1 2 0 0 17 0 1951.8946 A0A087WVR3;A0A087WTW0;Q96T88 A0A087WVR3 267 283 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 7.4642E-32 178.15 5 0.70953 0.97009 3.7683 2 Median 0.70953 0.97009 3.7683 2 0 Median NaN NaN NaN 0 0 Median 15284000 6935400 8348500 15284000 6935400 8348500 0 0 0 2965 337 3040 10807;10808;10809;10810;10811 16376;16377;16378;16379;16380;16381;16382 16378 7 ELYIHR PQVSLIINYDLPNNRELYIHRIGRSGRYGR INYDLPNNRELYIHRIGRSGRYGRKGVAIN R E L H R I 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 0 6 0 829.44464 A0A024R8W0;P38919 A0A024R8W0 359 364 DDX48;EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 0.037747 102.12 1 0.40585 0.54778 NaN 1 Median 0.40585 0.54778 NaN 1 0 Median NaN NaN NaN 0 0 Median 41547000 30589000 10958000 41547000 30589000 10958000 0 0 0 2966 206 3041 10812 16383 16383 1 ELYIQHAK KTVKENWKNLSDSEKELYIQHAKEDETRYH NLSDSEKELYIQHAKEDETRYHNEMKSWEE K E L A K E 1 0 0 0 0 1 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 8 0 1000.5342 Q6LES8;E5KSX8;E5KSU5;Q00059 Q6LES8 198 205 TFAM Transcription factor A, mitochondrial yes no 2 0.0013076 120.65 4 0.76472 0.9539 2.385 3 Median 0.76472 0.9539 2.385 3 0 Median NaN NaN NaN 0 0 Median 106430000 61151000 45283000 106430000 61151000 45283000 0 0 0 2967 1002 3042 10813;10814;10815;10816 16384;16385;16386;16387;16388;16389 16385 6 ELYLEDSPLELK IVDLIHDIQIVSTTRELYLEDSPLELKIQA TTRELYLEDSPLELKIQALDSEGNTFSTLA R E L L K I 0 0 0 1 0 0 3 0 0 0 4 1 0 0 1 1 0 0 1 0 0 0 12 0 1447.7446 Q8TEM1 Q8TEM1 127 138 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.0026884 83 3 2 0.57069 0.70923 20.237 3 Median 0.57069 0.70923 20.237 3 0 Median NaN NaN NaN 0 0 Median 24868000 9010000 15858000 15241000 9010000 6231400 9626300 0 9626300 2968 1661 3043 10817;10818;10819;10820;10821 16390;16391;16392;16393;16394;16395 16395 6 ELYQQLQR LVPAAELLESRVIDRELYQQLQRGERSVRD ESRVIDRELYQQLQRGERSVRDVAEVDTVR R E L Q R G 0 1 0 0 0 3 1 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 8 0 1076.5615 Q15149;D3DWL0 Q15149 3132 3139 PLEC;PLEC1 Plectin yes no 2 0.0031609 104.11 1 0.43962 0.58699 NaN 1 Median 0.43962 0.58699 NaN 1 0 Median NaN NaN NaN 0 0 Median 6100300 3287100 2813200 6100300 3287100 2813200 0 0 0 2969 1507 3044 10822 16396 16396 1 EMAAASAAAISGAGR ______________________________ EMAAASAAAISGAGRCRLSKIGATRRPPPA R E M G R C 7 1 0 0 0 0 1 2 0 1 0 0 1 0 0 2 0 0 0 0 0 0 15 0 1332.6456 Q14807;H3BQB9;B4DNF2 Q14807 13 27 KIF22 Kinesin-like protein KIF22 yes no 2 0.012594 49.423 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2970 1497 3045 10823 16397 16397 679 1 EMCDVEQVLSK FFNPVCATPNSKILKEMCDVEQVLSKKTPP KILKEMCDVEQVLSKKTPPAPSPFDLPELK K E M S K K 0 0 0 1 1 1 2 0 0 0 1 1 1 0 0 1 0 0 0 2 0 0 11 0 1336.6003 Q59HG1;O95239;B3KNC0 Q59HG1 1172 1182 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 0.00087154 68.76 2 0.57822 0.87391 1.9442 2 Median NaN NaN NaN 0 0 Median 0.57822 0.87391 1.9442 2 0 Median 33683000 20400000 13283000 0 0 0 33683000 20400000 13283000 2971 1216 3046 10824;10825 16398;16399 16398 452 2 EMDLVGLGLHPLFSSR RSRPAPSPESIKRAKEMDLVGLGLHPLFSS MDLVGLGLHPLFSSRFEEEELQRLRLVDSI K E M S R F 0 1 0 1 0 0 1 2 1 0 4 0 1 1 1 2 0 0 0 1 0 0 16 0 1769.9134 Q8TDD1;H0YHH7 Q8TDD1 536 551 DDX54 ATP-dependent RNA helicase DDX54 yes no 3 0.00011063 52.254 1 0.50455 0.76788 NaN 1 Median NaN NaN NaN 0 0 Median 0.50455 0.76788 NaN 1 0 Median 19673000 13360000 6313300 0 0 0 19673000 13360000 6313300 2972 1658 3047 10826 16400;16401 16400 735 2 EMEAELEDERK EQSEEKKKQLVRQVREMEAELEDERKQRSM RQVREMEAELEDERKQRSMAVAARKKLEMD R E M R K Q 1 1 0 1 0 0 5 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 11 1 1377.6082 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1593 1603 MYH9;FLJ00279 Myosin-9 no no 2 2.6997E-25 206.43 4 1 0.86058 1.1485 67.411 5 Median 0.8599 1.1269 7.5779 4 0 Median 3.3456 5.0594 NaN 1 0 Median 25104000 12330000 12774000 19609000 10989000 8619500 5494800 1340500 4154300 2973 61;490 3048;3049 10827;10828;10829;10830;10831 16402;16403;16404;16405;16406 16403 5 EMEENFAVEAANYQDTIGR DALKGTNESLERQMREMEENFAVEAANYQD NFAVEAANYQDTIGRLQDEIQNMKEEMARH R E M G R L 3 1 2 1 0 1 4 1 0 1 0 0 1 1 0 0 1 0 1 1 0 0 19 0 2185.9586 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;B0YJC5 V9HWE1 346 364 HEL113;VIM Vimentin yes no 2 6.4702E-127 283.66 9 2 0.67405 0.89909 31.889 8 Median 0.64544 0.88153 2.941 6 0 Median 1.0944 1.7496 5.4142 2 0 Median 150040000 80871000 69169000 67258000 42090000 25168000 82781000 38781000 44001000 2974 1245 3050;3051 10832;10833;10834;10835;10836;10837;10838;10839;10840;10841;10842 16407;16408;16409;16410;16411;16412;16413;16414;16415;16416;16417;16418;16419;16420;16421;16422;16423;16424;16425 16418 486 19 EMESIDQYIER ITTPNFKKLHEAHFKEMESIDQYIERKKKH AHFKEMESIDQYIERKKKHFEEHNSMNELK K E M E R K 0 1 0 1 0 1 3 0 0 2 0 0 1 0 0 1 0 0 1 0 0 0 11 0 1411.6289 Q9BXS6;A8K4B4;H0YMD2 Q9BXS6 195 205 NUSAP1 Nucleolar and spindle-associated protein 1 yes no 2 0.0048654 67.334 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5037600 5037600 0 0 0 0 5037600 5037600 0 2975 1723 3052 10843 16426 16426 781 1 EMFEDTVEER ______________________________ ______________________________ K E M E R V 0 1 0 1 0 0 4 0 0 0 0 0 1 1 0 0 1 0 0 1 0 0 10 0 1283.534 Q6FHQ0;Q16576;E9PC52;A8K6A2 Q6FHQ0 5 14 RBBP7 Histone-binding protein RBBP7 yes no 2 0.00010607 139.98 4 3 1.0818 1.6368 24.989 4 Linear 0.7519 1.0161 NaN 1 0 Median 1.0803 1.6991 4.7554 3 0 Plateau 107370000 53680000 53690000 5443500 3984400 1459100 101930000 49695000 52231000 2976 1521 3053;3054 10844;10845;10846;10847;10848;10849;10850 16427;16428;16429;16430;16431;16432;16433;16434;16435;16436;16437 16429 703 11 EMFNLFQVTDNR MTENEVGKIALHIEKEMFNLFQVTDNRYKS IEKEMFNLFQVTDNRYKSKYRSIMFNLKDP K E M N R Y 0 1 2 1 0 1 1 0 0 0 1 0 1 2 0 0 1 0 0 1 0 0 12 0 1512.7031 Q9BTC0 Q9BTC0 709 720 DIDO1 Death-inducer obliterator 1 yes yes 2 0.025074 45.939 1 0.70119 0.9129 NaN 1 Median NaN NaN NaN 0 0 Median 0.70119 0.9129 NaN 1 0 Median 5186300 3521000 1665300 0 0 0 5186300 3521000 1665300 2977 1713 3055 10851 16438 16438 0 EMLGGEIIPR SARILKLPSFELLHKEMLGGEIIPRSILMT ELLHKEMLGGEIIPRSILMTTFESSHYLLC K E M P R S 0 1 0 0 0 0 2 2 0 2 1 0 1 0 1 0 0 0 0 0 0 0 10 0 1113.5852 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 580 589 DDB1 DNA damage-binding protein 1 yes no 2 0.0045251 55.549 2 0.67873 0.96338 2.6547 2 Median NaN NaN NaN 0 0 Median 0.67873 0.96338 2.6547 2 0 Median 23036000 13723000 9313500 0 0 0 23036000 13723000 9313500 2978 1520 3056 10852;10853 16439;16440;16441;16442;16443 16442 696 5 EMQQSEAQINTAK EKDVYAVLQLEAEEKEMQQSEAQINTAKRL EKEMQQSEAQINTAKRLLEKGKEAVVQEPE K E M A K R 2 0 1 0 0 3 2 0 0 1 0 1 1 0 0 1 1 0 0 0 0 0 13 0 1476.6879 B7Z6D5;B3GQE6;Q96GQ7;Q53G15 B7Z6D5 591 603 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 0.0036981 48.44 1 0.97759 1.2474 NaN 1 Median 0.97759 1.2474 NaN 1 0 Median NaN NaN NaN 0 0 Median 1062800 577460 485290 1062800 577460 485290 0 0 0 2979 750 3057 10854 16444 16444 1 ENAAYFQFFSDVR SWMLQLCCCIEAHLKENAAYFQFFSDVREA LKENAAYFQFFSDVREAEGQLQKLQEALRR K E N V R E 2 1 1 1 0 1 1 0 0 0 0 0 0 3 0 1 0 0 1 1 0 0 13 0 1592.726 Q15149 Q15149 857 869 PLEC Plectin yes yes 2 3.7339E-20 185.99 4 0.90549 1.2202 5.9206 4 Median 0.90549 1.2202 5.9206 4 0 Median NaN NaN NaN 0 0 Median 63084000 32238000 30846000 63084000 32238000 30846000 0 0 0 2980 1507 3058 10855;10856;10857;10858 16445;16446;16447;16448;16449;16450;16451;16452 16447 8 ENAGEDPGLAR PGSGNPCHEASAAQKENAGEDPGLARQAPK AAQKENAGEDPGLARQAPKPRKQRSSLLEK K E N A R Q 2 1 1 1 0 0 2 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0 11 0 1127.5207 P81605 P81605 43 53 DCD Dermcidin;Survival-promoting peptide;DCD-1 yes yes 2 0.014624 53.756 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4595900 4595900 0 4595900 4595900 0 0 0 0 2981 1428 3059 10859 16453 16453 1 ENALTVVQK TPKKPPPEINPVDGRENALTVVQKDSSELP NPVDGRENALTVVQKDSSELPTTKSNSINS R E N Q K D 1 0 1 0 0 1 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 9 0 1000.5553 A0A1B0GUH9 A0A1B0GUH9 209 217 yes yes 2 0.013852 57.59 1 0.61734 0.78137 NaN 1 Median 0.61734 0.78137 NaN 1 0 Median NaN NaN NaN 0 0 Median 8039000 4839000 3200000 8039000 4839000 3200000 0 0 0 2982 517 3060 10860 16454;16455 16454 2 ENCPVPGKPGEAVAAR YFKKASGQPAGPDNKENCPVPGKPGEAVAA NCPVPGKPGEAVAARKLFAPQQILQCSPAN K E N A R K 3 1 1 0 1 0 2 2 0 0 0 1 0 0 3 0 0 0 0 2 0 0 16 1 1650.8148 B5BUF9;B5BU32;A0A024R8N6;P04183;K7ERV3 B5BUF9 204 219 TK1 Thymidine kinase;Thymidine kinase, cytosolic yes no 3 0.00022329 91.592 2 0.26453 0.34841 22.974 2 Median 0.26453 0.34841 22.974 2 0 Median NaN NaN NaN 0 0 Median 25718000 19821000 5897300 25718000 19821000 5897300 0 0 0 2983 200 3061 10861;10862 16456;16457;16458 16456 3 ENDAHLVEVNLNNIK PPNPTNVEESLKRTKENDAHLVEVNLNNIK ENDAHLVEVNLNNIKNIPIPTLKDFAKALE K E N I K N 1 0 4 1 0 0 2 0 1 1 2 1 0 0 0 0 0 0 0 2 0 0 15 0 1720.8744 Q5HYL6;Q9NYL9;H0YKU1;H0YNJ8 Q5HYL6 195 209 DKFZp686E1899;TMOD3 Tropomodulin-3 yes no 3 2.7104E-07 124.81 3 1.0839 1.3247 8.5006 3 Median 1.0839 1.3247 8.5006 3 0 Median NaN NaN NaN 0 0 Median 44681000 20800000 23881000 44681000 20800000 23881000 0 0 0 2984 1558 3062 10863;10864;10865 16459;16460;16461;16462 16459 4 ENDAVTIQVLNQLIQK LFIEILNRYIYFYEKENDAVTIQVLNQLIQ NDAVTIQVLNQLIQKIREDLPNLESSEETE K E N Q K I 1 0 2 1 0 3 1 0 0 2 2 1 0 0 0 0 1 0 0 2 0 0 16 0 1824.9945 Q53FR4;Q96QK1 Q53FR4 734 749 VPS35 Vacuolar protein sorting-associated protein 35 yes no 2 1.2106E-09 141.37 2 0.83855 1.0587 NaN 1 Median 0.83855 1.0587 NaN 1 0 Median NaN NaN NaN 0 0 Median 2609500 1912700 696840 2609500 1912700 696840 0 0 0 2985 1539 3063 10866;10867 16463;16464 16463 2 ENDPEANIDTIYDR MNIKDEEAIFITLVKENDPEANIDTIYDRF KENDPEANIDTIYDRFVHLDNLPEDGLQCV K E N D R F 1 1 2 3 0 0 2 0 0 2 0 0 0 0 1 0 1 0 1 0 0 0 14 0 1663.7326 Q14966;D6W5H1;A8K583;B4E187 Q14966 996 1009 ZNF638 Zinc finger protein 638 yes no 2 0.00012467 91.858 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2167900 2167900 0 2167900 2167900 0 0 0 0 2986 1498 3064 10868;10869 16465;16466;16467 16466 3 ENDPSSVLLFLVGSK ASLEHTKQWLADALKENDPSSVLLFLVGSK ENDPSSVLLFLVGSKKDLSTPAQYALMEKD K E N S K K 0 0 1 1 0 0 1 1 0 0 3 1 0 1 1 3 0 0 0 2 0 0 15 0 1603.8457 C9JY26;Q6NXT3;A0A024QZ68;Q9BZG1;C9JBG0;Q96PJ7;E7ES60 C9JY26 153 167 RAB34 Ras-related protein Rab-34 yes no 2 1.4184E-10 104.87 4 0.51749 0.65527 30.486 2 Median 0.51749 0.65527 30.486 2 0 Median NaN NaN NaN 0 0 Median 6484200 4748600 1735600 6484200 4748600 1735600 0 0 0 2987 7 3065 10870;10871;10872;10873 16468;16469;16470;16471 16471 4 ENEFSFEDNAIK VVTYTGDKDSRAIIRENEFSFEDNAIKGGK IIRENEFSFEDNAIKGGKKAFKMKREAQVK R E N I K G 1 0 2 1 0 0 3 0 0 1 0 1 0 2 0 1 0 0 0 0 0 0 12 0 1441.6361 Q12873 Q12873 828 839 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes yes 2 2.5616E-07 125.68 3 2 0.84156 1.1533 18.635 4 Median 0.77728 1.009 4.7899 2 0 Median 0.9107 1.3668 9.8985 2 0 Median 37288000 19520000 17768000 15632000 8250300 7381900 21656000 11270000 10386000 2988 1458 3066 10874;10875;10876;10877;10878 16472;16473;16474;16475;16476;16477;16478 16476 7 ENEFSFEDNAIR VVTYVGDKDSRAIIRENEFSFEDNAIRGGK IIRENEFSFEDNAIRGGKKASRMKKEASVK R E N I R G 1 1 2 1 0 0 3 0 0 1 0 0 0 2 0 1 0 0 0 0 0 0 12 0 1469.6423 B3KY63;F5GWX5;A0A0C4DGG9;Q14839;Q8TDI0;K7EMY3;Q659F1;Q659D0;Q6ZSZ4;F2Z2R5 B3KY63 792 803 CHD4;CHD5;DKFZp434K213;DKFZp434P202 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5 yes no 2 1.72E-41 230.06 4 2 0.72213 0.98757 38.831 6 Median 0.67707 0.9204 7.2722 4 0 Median 1.1976 1.9573 0.68761 2 0 Median 334210000 169210000 164990000 143100000 82355000 60743000 191110000 86860000 104250000 2989 428 3067 10879;10880;10881;10882;10883;10884 16479;16480;16481;16482;16483;16484;16485;16486;16487;16488;16489;16490 16482 12 ENETCLADQETGSK SSTTKSEESITVSDKENETCLADQETGSKN KENETCLADQETGSKNIVSCDSNIGADKVE K E N S K N 1 0 1 1 1 1 3 1 0 0 1 1 0 0 0 1 2 0 0 0 0 0 14 0 1580.6624 A8K124;B4DHL1;A0A024R5W1;Q6N043 A8K124 796 809 SUHW4;ZNF280D Zinc finger protein 280D yes no 2 0.0036171 54.471 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 806030 806030 0 806030 806030 0 0 0 0 2990 151 3068 10885 16491 16491 1 ENETLIQR KFVPSDEKKKQGCQRENETLIQRRKDQMQP KKQGCQRENETLIQRRKDQMQPGGTAISVT R E N Q R R 0 1 1 0 0 1 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 8 0 1001.5142 Q6P1J9;A0A1B0GUB2;A0A0S2Z5M9 Q6P1J9 400 407 CDC73 Parafibromin yes no 2 0.00042204 107.59 5 2 0.6915 0.9351 18.889 2 Median 0.6915 0.9351 18.889 2 0 Median NaN NaN NaN 0 0 Median 53264000 39205000 14059000 49847000 35789000 14059000 3416900 3416900 0 2991 1590 3069 10886;10887;10888;10889;10890;10891;10892 16492;16493;16494;16495;16496;16497;16498;16499;16500 16494 9 ENEVEEVKEEGPK PEGEEHHPVADTENKENEVEEVKEEGPKEM NKENEVEEVKEEGPKEMTLDEWKAIQNKDR K E N P K E 0 0 1 0 0 0 6 1 0 0 0 2 0 0 1 0 0 0 0 2 0 0 13 1 1514.71 Q63HR1;Q5VU21;D3DQ69;Q8NC51;D3DQ70 Q63HR1 253 265 DKFZp686P17171;SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 2;3 5.8967E-25 193.62 7 2 0.7532 0.91428 67.862 9 Median 0.73275 0.90107 20.821 7 0 Median 2.6 3.9073 1.2149 2 0 Median 42942000 20917000 22025000 33369000 17862000 15506000 9573500 3054600 6518900 2992 1578 3070 10893;10894;10895;10896;10897;10898;10899;10900;10901 16501;16502;16503;16504;16505;16506;16507;16508;16509;16510;16511;16512;16513;16514 16505 13 ENEVSTSATDELLSQFK QEMDIDEILRLAETRENEVSTSATDELLSQ EVSTSATDELLSQFKVANFATMEDEEELEE R E N F K V 1 0 1 1 0 1 3 0 0 0 2 1 0 1 0 3 2 0 0 1 0 0 17 0 1896.8953 A0A024RC75;O14647;A0A1B0GTU9;A8K9Y5 A0A024RC75 1006 1022 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 2 1.4087E-13 143.76 2 2 0.79226 1.1078 22.08 4 Median 0.73958 0.93803 6.3574 2 0 Median 0.88507 1.3474 10.512 2 0 Median 47514000 27795000 19718000 11510000 6871900 4637600 36004000 20924000 15081000 2993 289 3071 10902;10903;10904;10905 16515;16516;16517;16518;16519 16515 5 ENFALECSPAFQVSDDEHEK LVPLSVSSGKNVIIKENFALECSPAFQVSD ECSPAFQVSDDEHEKMNKMKFKVNRRTQKS K E N E K M 2 0 1 2 1 1 4 0 1 0 1 1 0 2 1 2 0 0 0 1 0 0 20 0 2351.0012 Q562F6;B7Z7S9 Q562F6 1174 1193 SGOL2 Shugoshin-like 2 yes no 3 7.1245E-05 83.229 2 0.79014 1.0023 10.812 2 Median 0.79014 1.0023 10.812 2 0 Median NaN NaN NaN 0 0 Median 17180000 9408400 7771400 17180000 9408400 7771400 0 0 0 2994 1546 3072 10906;10907 16520;16521;16522;16523 16521 4 ENFCNIHVSLVPQPSSTGEQK PFIEAFRQFQFKVKRENFCNIHVSLVPQPS HVSLVPQPSSTGEQKTKPTQNSVRELRGLG R E N Q K T 0 0 2 0 1 2 2 1 1 1 1 1 0 1 2 3 1 0 0 2 0 0 21 0 2370.1274 P17812;B4E1E0;B4DMB5;B7Z9C4 P17812 173 193 CTPS1 CTP synthase 1;CTP synthase yes no 3 8.8004E-22 135.81 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2780800 2780800 0 2780800 2780800 0 0 0 0 2995 1278 3073 10908;10909 16524;16525;16526 16526 3 ENGAFTVLVDNYVK GKKYRPLFDYFLKCKENGAFTVLVDNYVKE KENGAFTVLVDNYVKEEEGTGVVHQAPYFG K E N V K E 1 0 2 1 0 0 1 1 0 0 1 1 0 1 0 0 1 0 1 3 0 0 14 0 1567.7882 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z355;Q6P0M4;Q5TCD1 Q59G75 318 331 IARS;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.009239 86.814 2 0.78672 1.0013 NaN 1 Median 0.78672 1.0013 NaN 1 0 Median NaN NaN NaN 0 0 Median 7115900 4827100 2288900 7115900 4827100 2288900 0 0 0 2996 1334 3074 10910;10911 16527;16528 16527 2 ENGVYLIDVK TEIDQDKYAVRFIPRENGVYLIDVKFNGTH RFIPRENGVYLIDVKFNGTHIPGSPFKIRV R E N V K F 0 0 1 1 0 0 1 1 0 1 1 1 0 0 0 0 0 0 1 2 0 0 10 0 1148.6077 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5 P21333 2396 2405 FLNA;FLJ00119 Filamin-A yes no 2 0.011497 72.096 3 0.89864 1.1505 20.353 2 Median 0.89864 1.1505 20.353 2 0 Median NaN NaN NaN 0 0 Median 21632000 8528300 13104000 21632000 8528300 13104000 0 0 0 2997 1287 3075 10912;10913;10914 16529;16530;16531;16532 16530 4 ENIAYLTHTER AVSSNVGAYMQPGARENIAYLTHTERRKDF PGARENIAYLTHTERRKDFQYEAMQERREA R E N E R R 1 1 1 0 0 0 2 0 1 1 1 0 0 0 0 0 2 0 1 0 0 0 11 0 1345.6626 Q8N523;A0A024R1I7;Q9UBB9;B4DSX8;B4DPE5 Q8N523 729 739 TFIP11 Tuftelin-interacting protein 11 yes no 2 0.03112 84.198 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 2998 58 3076 10915 16533 16533 1 ENIELKENDEK EGEMKEIERPFETYKENIELKENDEKMKAM ETYKENIELKENDEKMKAMKRSRTWGQKCA K E N E K M 0 0 2 1 0 0 4 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 11 1 1359.6518 P46013 P46013 934 944 MKI67 Antigen KI-67 yes yes 2 0.00012923 136.96 3 0.97236 1.1603 10.702 2 Median 0.97236 1.1603 10.702 2 0 Median NaN NaN NaN 0 0 Median 4684300 2116100 2568300 4684300 2116100 2568300 0 0 0 2999 1342 3077 10916;10917;10918 16534;16535;16536;16537 16535 4 ENILEEFSK NNRLFVGSIPKNKTKENILEEFSKVTEGLV PKNKTKENILEEFSKVTEGLVDVILYHQPD K E N S K V 0 0 1 0 0 0 3 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 9 0 1107.5448 Q0VGD6;Q6MZS5;B2R7W4;O43390;B4DT28;B4DMB1;B4DMD1 Q0VGD6 234 242 HNRPR;DKFZp686A13234;HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 2 0.0017437 122.33 3 0.68928 0.87249 2.635 2 Median 0.68928 0.87249 2.635 2 0 Median NaN NaN NaN 0 0 Median 13239000 7212700 6026600 13239000 7212700 6026600 0 0 0 3000 711 3078 10919;10920;10921 16538;16539;16540 16540 2 ENILHVSENVIFTDVNSILR EHVKDDVSISVEEGKENILHVSENVIFTDV VSENVIFTDVNSILRYLARVATTAGLYGSN K E N L R Y 0 1 3 1 0 0 2 0 1 3 2 0 0 1 0 2 1 0 0 3 0 0 20 0 2311.2172 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5;V9GZ76 P07814 37 56 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 3 4.4289E-05 48.053 2 0.47851 0.64561 8.7714 2 Median 0.47851 0.64561 8.7714 2 0 Median NaN NaN NaN 0 0 Median 49176000 31918000 17258000 49176000 31918000 17258000 0 0 0 3001 1242 3079 10922;10923 16541;16542;16543;16544 16544 4 ENIQTTNYNTALDFHSNSDVTK NSEEWFAAACKKELKENIQTTNYNTALDFH YNTALDFHSNSDVTKQVIQTHVNAGEAPDP K E N T K Q 1 0 4 2 0 1 1 0 1 1 1 1 0 1 0 2 4 0 1 1 0 0 22 0 2511.1514 Q8NG31;H0YCZ2;E9PPJ1 Q8NG31 1535 1556 CASC5 Protein CASC5 yes no 3 2.2883E-23 102.61 3 1 0.6732 0.8453 14.042 3 Plateau 0.6732 0.85343 19.843 2 0 Median 0.55895 0.8453 NaN 1 0 Median 37385000 22781000 14604000 28462000 17550000 10913000 8922200 5231000 3691200 3002 1656 3080 10924;10925;10926;10927 16545;16546;16547;16548;16549;16550;16551;16552;16553 16551 9 ENISNAQALLEYHLSYLQEVEQLR PREEGMVPFIFVGTRENISNAQALLEYHLS LEYHLSYLQEVEQLRLERLQIDEQLRQIGL R E N L R L 2 1 2 0 0 3 4 0 1 1 5 0 0 0 0 2 0 0 2 1 0 0 24 0 2859.4403 P51116 P51116 352 375 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 3 6.9275E-23 132.65 4 0.76952 1.025 3.813 3 Median 0.76952 1.025 3.813 3 0 Median NaN NaN NaN 0 0 Median 61841000 32369000 29472000 61841000 32369000 29472000 0 0 0 3003 1360 3081 10928;10929;10930;10931 16554;16555;16556;16557 16555 4 ENIVEAIIHSPELIR ISPYTIPEEDRHCIRENIVEAIIHSPELIR ENIVEAIIHSPELIRVQLTTCIHHIIKHDY R E N I R V 1 1 1 0 0 0 3 0 1 4 1 0 0 0 1 1 0 0 0 1 0 0 15 0 1731.9519 O95373;E9PLB2 O95373 93 107 IPO7 Importin-7 yes no 2 1.6738E-05 113.53 2 0.54925 0.74162 NaN 1 Median 0.54925 0.74162 NaN 1 0 Median NaN NaN NaN 0 0 Median 3771500 2444800 1326800 3771500 2444800 1326800 0 0 0 3004 1219 3082 10932;10933 16558;16559 16558 2 ENLAESSKPTAGGSR LAAQKLALSPLSLGKENLAESSKPTAGGSR ENLAESSKPTAGGSRSQKVKVAQRSPVDSG K E N S R S 2 1 1 0 0 0 2 2 0 0 1 1 0 0 1 3 1 0 0 0 0 0 15 1 1502.7325 P49454 P49454 3126 3140 CENPF Centromere protein F yes yes 2 9.1212E-07 130.69 2 1 0.9528 1.4009 31.744 3 Median 0.82585 1.0727 37.76 2 0 Median 0.9528 1.4442 NaN 1 0 Median 12130000 6811200 5318500 5617300 3357200 2260100 6512400 3454000 3058400 3005 1351 3083 10934;10935;10936 16560;16561;16562;16563;16564 16560 5 ENLELILTQSVENVGVR HRVYKLVEDTKHRPKENLELILTQSVENVG LELILTQSVENVGVRGDLVSVKKSLGRNRL K E N V R G 0 1 2 0 0 1 3 1 0 1 3 0 0 0 0 1 1 0 0 3 0 0 17 0 1912.0266 Q9BYD2;B4DDZ7;B4DUJ1;Q5SZR1 Q9BYD2 92 108 MRPL9 39S ribosomal protein L9, mitochondrial yes no 2 2.1868E-18 154.1 1 0.5319 0.73534 NaN 1 Median 0.5319 0.73534 NaN 1 0 Median NaN NaN NaN 0 0 Median 1787800 1245800 542010 1787800 1245800 542010 0 0 0 3006 1725 3084 10937 16565 16565 1 ENLESWLNYLK KKLVLILNKSDLVPKENLESWLNYLKKELP LVPKENLESWLNYLKKELPTVVFRASTKPK K E N L K K 0 0 2 0 0 0 2 0 0 0 3 1 0 0 0 1 0 1 1 0 0 0 11 0 1407.7034 A0A024R2Z6;Q9BVP2 A0A024R2Z6 174 184 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.0044147 56.013 1 0.57828 0.87365 NaN 1 Median NaN NaN NaN 0 0 Median 0.57828 0.87365 NaN 1 0 Median 8699700 5496500 3203100 0 0 0 8699700 5496500 3203100 3007 95 3085 10938 16566;16567 16567 2 ENLHTYFK SDTLSFFKQEFQDRRENLHTYFKENQEVKE QEFQDRRENLHTYFKENQEVKEWDFQSSLV R E N F K E 0 0 1 0 0 0 1 0 1 0 1 1 0 1 0 0 1 0 1 0 0 0 8 0 1050.5134 E7EP17;Q9NYC9 E7EP17 413 420 DNAH9 Dynein heavy chain 9, axonemal yes no 2 0.043641 44.395 1 0.68055 0.86548 NaN 1 Median 0.68055 0.86548 NaN 1 0 Median NaN NaN NaN 0 0 Median 68475000 38421000 30053000 68475000 38421000 30053000 0 0 0 3008 1009 3086 10939 16568 16568 1 ENLISALEEAKK VVTHGGRVLAVTAIRENLISALEEAKKGLA AIRENLISALEEAKKGLAAIKFEGAIYRKD R E N K K G 2 0 1 0 0 0 3 0 0 1 2 2 0 0 0 1 0 0 0 0 0 0 12 1 1343.7296 Q3B7A7;Q59HH3;P22102;Q15374 Q3B7A7 394 405 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 3 0.045278 27.137 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3009 1289 3087 10940 16569 16569 1 ENLLEEQGSIALR AAYVKKLDPAQSASRENLLEEQGSIALRQE SRENLLEEQGSIALRQEQIDNQTRITKEAG R E N L R Q 1 1 1 0 0 1 3 1 0 1 3 0 0 0 0 1 0 0 0 0 0 0 13 0 1470.7678 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8;Q9UG16 Q13813 1033 1045 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 1.4201E-16 172.61 4 1 0.82986 1.1156 13.729 4 Median 0.82986 1.1156 13.729 4 0 Median NaN NaN NaN 0 0 Median 54296000 30043000 24254000 52092000 30043000 22049000 2204200 0 2204200 3010 1476 3088 10941;10942;10943;10944;10945 16570;16571;16572;16573;16574;16575;16576;16577;16578 16571 9 ENLLEEQGSIALRQEQIDNQTR AAYVKKLDPAQSASRENLLEEQGSIALRQE GSIALRQEQIDNQTRITKEAGSVSLRMKQV R E N T R I 1 2 2 1 0 4 4 1 0 2 3 0 0 0 0 1 1 0 0 0 0 0 22 1 2583.2889 Q13813;A0A0D9SGF6;B4DGT1 Q13813 1033 1054 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 3 1.7849E-26 148.52 3 0.80986 1.0719 11.652 3 Median 0.80986 1.0719 11.652 3 0 Median NaN NaN NaN 0 0 Median 21695000 11302000 10393000 21695000 11302000 10393000 0 0 0 3011 1476 3089 10946;10947;10948 16579;16580;16581;16582;16583;16584;16585 16580 7 ENLLGSIK QNNLIEYHCMVNFIKENLLGSIKEFRNRFI CMVNFIKENLLGSIKEFRNRFINPIQNGQC K E N I K E 0 0 1 0 0 0 1 1 0 1 2 1 0 0 0 1 0 0 0 0 0 0 8 0 872.49673 A4LAA3;P46100;B4DHH8;H0Y3T0;Q5JX93 A4LAA3 1767 1774 ATRX Transcriptional regulator ATRX yes no 2 0.010906 71.877 1 0.68734 0.87098 NaN 1 Median 0.68734 0.87098 NaN 1 0 Median NaN NaN NaN 0 0 Median 6484700 4051400 2433300 6484700 4051400 2433300 0 0 0 3012 556 3090 10949 16586;16587 16586 2 ENLPQDYAR YRGLKSFRTSPWDPKENLPQDYARIFQFQN SPWDPKENLPQDYARIFQFQNFTNTRKSIF K E N A R I 1 1 1 1 0 1 1 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 9 0 1104.52 Q2NL82 Q2NL82 518 526 TSR1 Pre-rRNA-processing protein TSR1 homolog yes yes 2 0.0050942 99.136 1 0.937 1.3067 NaN 1 Median 0.937 1.3067 NaN 1 0 Median NaN NaN NaN 0 0 Median 4368500 3232600 1135900 4368500 3232600 1135900 0 0 0 3013 1529 3091 10950 16588 16588 1 ENLQFPDR GSPLLFDSTLDLETKENLQFPDRSVQRKVS TLDLETKENLQFPDRSVQRKVSPASGVSKK K E N D R S 0 1 1 1 0 1 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 8 0 1017.488 A0A024R0F1;Q9UNY4 A0A024R0F1 382 389 TTF2 Transcription termination factor 2 yes no 2 0.0083248 78.334 1 2 0.8825 1.2605 6.3584 3 Plateau 0.849 1.119 NaN 1 0 Median 0.88402 1.2473 1.485 2 0 Median 26663000 14661000 12003000 8724900 4894900 3830000 17938000 9765700 8172600 3014 33 3092 10951;10952;10953 16589;16590;16591;16592;16593;16594 16589 6 ENLTDLVVDTDTLGESTQPQR GPPVAQVEQDLPISRENLTDLVVDTDTLGE VVDTDTLGESTQPQREGAQVPTGREREQHV R E N Q R E 0 1 1 3 0 2 2 1 0 0 3 0 0 0 1 1 4 0 0 2 0 0 21 0 2330.1238 Q14676;B4DYH4 Q14676 643 663 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 2 9.7278E-05 82.102 2 0.97791 1.3227 NaN 1 Median 0.97791 1.3227 NaN 1 0 Median NaN NaN NaN 0 0 Median 3868400 1699300 2169100 3868400 1699300 2169100 0 0 0 3015 1491 3093 10954;10955 16595;16596 16596 2 ENLTELSGGQR LDGLEFKVALGNTWKENLTELSGGQRSLVA NTWKENLTELSGGQRSLVALSLILSMLLFK K E N Q R S 0 1 1 0 0 1 2 2 0 0 2 0 0 0 0 1 1 0 0 0 0 0 11 0 1202.5891 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27;A0A0C4DGE5;Q13497 A0A024R158 1080 1090 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 2.6236E-15 166.09 5 2 0.69273 1.0109 3.9652 6 Median 0.71616 0.98889 4.4905 4 0 Median 0.63213 1.0227 1.4388 2 0 Median 644000000 383650000 260340000 528730000 311600000 217130000 115260000 72050000 43215000 3016 50 3094 10956;10957;10958;10959;10960;10961;10962 16597;16598;16599;16600;16601;16602;16603;16604;16605;16606;16607;16608;16609;16610;16611;16612;16613;16614 16598 18 ENLTNELQK LRGLELDVVTIRSEKENLTNELQKEQERIS TIRSEKENLTNELQKEQERISELEIINSSF K E N Q K E 0 0 2 0 0 1 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1087.551 P49454 P49454 2491 2499 CENPF Centromere protein F yes yes 2 0.036995 70.816 1 0.72089 0.94956 NaN 1 Median 0.72089 0.94956 NaN 1 0 Median NaN NaN NaN 0 0 Median 2192100 1241800 950260 2192100 1241800 950260 0 0 0 3017 1351 3095 10963 16615 16615 1 ENMEAISPLK GPTYYIDTNALRVPRENMEAISPLKNGTVE LRVPRENMEAISPLKNGTVEDWDSFQAILD R E N L K N 1 0 1 0 0 0 2 0 0 1 1 1 1 0 1 1 0 0 0 0 0 0 10 0 1130.5642 Q6FI97;Q53FS0;O96019;H7C5S0;C9JQT2 Q6FI97 80 89 BAF53A;ACTL6A Actin-like protein 6A yes no 2 0.0027029 63.076 2 0.97771 1.492 4.0843 2 Median NaN NaN NaN 0 0 Median 0.97771 1.492 4.0843 2 0 Median 45338000 23954000 21384000 0 0 0 45338000 23954000 21384000 3018 1227 3096 10964;10965 16616;16617;16618 16617 465 3 ENMNLSEAQVQALALSR VRIQPLEDIISAVWKENMNLSEAQVQALAL MNLSEAQVQALALSRQASQELDVKRREAIY K E N S R Q 3 1 2 0 0 2 2 0 0 0 3 0 1 0 0 2 0 0 0 1 0 0 17 0 1872.9364 A4LAA3;P46100;B4DHH8;B4DLE1;B4DLW1 A4LAA3 2360 2376 ATRX Transcriptional regulator ATRX yes no 2 0.00045001 43.69 1 0.81375 1.146 NaN 1 Median NaN NaN NaN 0 0 Median 0.81375 1.146 NaN 1 0 Median 12064000 6366800 5697100 0 0 0 12064000 6366800 5697100 3019 556 3097 10966 16619 16619 193 1 ENMTLQPK VNALIENPTFDSQTKENMTLQPKSFGSTCQ TFDSQTKENMTLQPKSFGSTCQLSEKFIKA K E N P K S 0 0 1 0 0 1 1 0 0 0 1 1 1 0 1 0 1 0 0 0 0 0 8 0 959.47462 P11388;Q71UH4;Q02880;B4DKD0;E9PCY5 P11388 379 386 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2 0.017034 84.568 3 0.86069 1.0892 7.8318 2 Median 0.86069 1.0892 7.8318 2 0 Median NaN NaN NaN 0 0 Median 22951000 11723000 11228000 22951000 11723000 11228000 0 0 0 3020 1256;1437 3098 10967;10968;10969 16620;16621;16622 16621 3 ENNQNVYGLDDSEHISSIVDVPPR QPLSTQDNSEVLFLKENNQNVYGLDDSEHI DDSEHISSIVDVPPRESHSHSDQSSKTSLM K E N P R E 0 1 3 3 0 1 2 1 1 2 1 0 0 0 2 3 0 0 1 3 0 0 24 0 2696.2678 Q562F6;B7Z7S9 Q562F6 211 234 SGOL2 Shugoshin-like 2 yes no 3 0.037303 12.314 1 0.67245 0.9116 NaN 1 Median 0.67245 0.9116 NaN 1 0 Median NaN NaN NaN 0 0 Median 5420000 3022400 2397600 5420000 3022400 2397600 0 0 0 3021 1546 3099 10970 16623 16623 1 ENNVDAVHPGYGFLSER VQAYLHIPDIIKVAKENNVDAVHPGYGFLS NVDAVHPGYGFLSERADFAQACQDAGVRFI K E N E R A 1 1 2 1 0 0 2 2 1 0 1 0 0 1 1 1 0 0 1 2 0 0 17 0 1902.886 A0A024R5C5;P11498;E9PRE7 A0A024R5C5 108 124 PC Pyruvate carboxylase;Pyruvate carboxylase, mitochondrial yes no 3 0.0019006 44.807 1 0.27856 0.38482 NaN 1 Median 0.27856 0.38482 NaN 1 0 Median NaN NaN NaN 0 0 Median 4668400 3234500 1433900 4668400 3234500 1433900 0 0 0 3022 139 3100 10971 16624 16624 1 ENNYLNQHVNR YEPHKGKLKPWGQSKENNYLNQHVNRINFY GQSKENNYLNQHVNRINFYKKTYKQPHLQT K E N N R I 0 1 4 0 0 1 1 0 1 0 1 0 0 0 0 0 0 0 1 1 0 0 11 0 1399.6593 Q9BXS6;A8K4B4 Q9BXS6 385 395 NUSAP1 Nucleolar and spindle-associated protein 1 yes no 2 4.805E-09 134.05 2 2 0.26521 0.34428 62.774 3 Median 0.74146 0.9907 NaN 1 0 Median 0.25707 0.33439 4.1224 2 0 Median 8686300 6997900 1688400 2451200 1909700 541500 6235100 5088200 1146900 3023 1723 3101 10972;10973;10974;10975 16625;16626;16627;16628;16629 16628 5 ENPGFDFSGAEISGNYTK QDQMQRKLTLERFQKENPGFDFSGAEISGN GFDFSGAEISGNYTKGGPDFSNLEK_____ K E N T K G 1 0 2 1 0 0 2 3 0 1 0 1 0 2 1 2 1 0 1 0 0 0 18 0 1931.8537 E5RFP0;Q8WVJ2 E5RFP0 105 122 NUDCD2 NudC domain-containing protein 2 yes no 2 0.00041763 101.45 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 921020 921020 0 921020 921020 0 0 0 0 3024 1005 3102 10976;10977 16630;16631 16631 2 ENPLLPEEEEQR EFENRTRNVDVYDKRENPLLPEEEEQRAIA DKRENPLLPEEEEQRAIAKIKMLGNIKFIG R E N Q R A 0 1 1 0 0 1 5 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 12 0 1481.6998 D3DQV9;Q59G42;B4DZF2;P78344;H0Y3P2;H0YCH5;H0YEC5;H0YD77 D3DQV9 189 200 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 1.6005E-16 169.93 6 2 0.37417 0.49573 NaN 1 Median 0.37417 0.49573 NaN 1 0 Median NaN NaN NaN 0 0 Median 34437000 16777000 17660000 24301000 16777000 7524100 10136000 0 10136000 3025 877 3103 10978;10979;10980;10981;10982;10983;10984;10985 16632;16633;16634;16635;16636;16637;16638;16639;16640;16641;16642 16635 11 ENPLPQGSVDYNNQK MQSRSGKGPSFAEAKENPLPQGSVDYNNQK ENPLPQGSVDYNNQKRGKRESQTSIPDYFY K E N Q K R 0 0 3 1 0 2 1 1 0 0 1 1 0 0 2 1 0 0 1 1 0 0 15 0 1701.7958 A0A024QZE0;Q9H7E2 A0A024QZE0 425 439 TDRD3 Tudor domain-containing protein 3 yes no 2 0.046781 78.692 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3026 11 3104 10986 16643 16643 1 ENPSATLEDLEKPGVDEEPQHVLLR QITAQQINKLEELWKENPSATLEDLEKPGV EKPGVDEEPQHVLLRYEDAYQYQNIFGPLV K E N L R Y 1 1 1 2 0 1 5 1 1 0 4 1 0 0 3 1 1 0 0 2 0 0 25 1 2814.4036 A0A024R7L5;A0A024R7L8;Q92900 A0A024R7L5 271 295 UPF1 Regulator of nonsense transcripts 1 yes no 3 2.3404E-28 99.881 3 0.45268 0.61449 17.474 3 Median 0.45268 0.61449 17.474 3 0 Median NaN NaN NaN 0 0 Median 29431000 20018000 9413500 29431000 20018000 9413500 0 0 0 3027 180 3105 10987;10988;10989 16644;16645;16646;16647;16648 16648 5 ENQELNAHNQELNNR QALEAERQALRQCQRENQELNAHNQELNNR ENQELNAHNQELNNRLAAEITRLRTLLTGD R E N N R L 1 1 5 0 0 2 3 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 15 0 1821.8354 B9EGI2;U6FSN9;Q6WCQ1;J3KSW8;H0Y2S9;H0Y7E2;Q9Y6X7;Q5ZEZ6 B9EGI2 853 867 MPRIP;Mprip-Ntrk1 fusion gene;KIAA0864;M-RIP Tyrosine-protein kinase receptor;Myosin phosphatase Rho-interacting protein yes no 3 0.0024831 35.35 1 1.7934 2.4384 NaN 1 Median 1.7934 2.4384 NaN 1 0 Median NaN NaN NaN 0 0 Median 5293200 2260200 3033000 5293200 2260200 3033000 0 0 0 3028 928 3106 10990 16649 16649 1 ENQVLSVR HKLQDASAEVERLRRENQVLSVRIADKKYY EVERLRRENQVLSVRIADKKYYPSSQDSSS R E N V R I 0 1 1 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 8 0 943.50869 A0A024R7H5;B4E0Z6;Q10589 A0A024R7H5 140 147 BST2 Bone marrow stromal antigen 2 yes no 2 0.039013 50.04 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3029 177 3107 10991 16650 16650 1 ENSETVVTGSLDDLVK HDDAIWSVAWGTNKKENSETVVTGSLDDLV NSETVVTGSLDDLVKVWKWRDERLDLQWSL K E N V K V 0 0 1 2 0 0 2 1 0 0 2 1 0 0 0 2 2 0 0 3 0 0 16 0 1704.8418 Q9GZS3;H0YN81;H0YMF9;H0YM76;B4E387 Q9GZS3 30 45 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes no 2 3.2714E-84 246.51 4 2 0.67357 0.84222 86.108 6 Median 0.647 0.81315 5.4615 4 0 Median 2.7655 4.2764 6.611 2 0 Median 125630000 66581000 59053000 82285000 51019000 31266000 43348000 15561000 27787000 3030 1729 3108 10992;10993;10994;10995;10996;10997 16651;16652;16653;16654;16655;16656;16657;16658;16659;16660 16651 10 ENSKREEEEQQEGGFASPR PEGYLEALANREREKENSKREEEEQQEGGF REEEEQQEGGFASPRTGKGKWKRKSAGGGP K E N P R T 1 2 1 0 0 2 6 2 0 0 0 1 0 1 1 2 0 0 0 0 0 0 19 2 2205.9887 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9;B4E0F9 A0A087WVR3 636 654 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 3 0.046042 42.64 2 0.67526 0.76684 20.053 2 Median 0.67526 0.76684 20.053 2 0 Median NaN NaN NaN 0 0 Median 4506200 2423800 2082400 4506200 2423800 2082400 0 0 0 3031 337 3109 10998;10999 16661;16662 16661 2 ENSYPWPYGR ______________________________ ______________________________ K E N G R Q 0 1 1 0 0 0 1 1 0 0 0 0 0 0 2 1 0 1 2 0 0 0 10 0 1267.5622 B2RC06;Q96GD4;J3KTD6;J3KRF8 B2RC06 5 14 AURKB Aurora kinase B no no 2 0.019093 46.158 1 0.82546 1.0992 NaN 1 Median NaN NaN NaN 0 0 Median 0.82546 1.0992 NaN 1 0 Median 4905600 2720300 2185300 0 0 0 4905600 2720300 2185300 3032 731;1686 3110 11000 16663 16663 1 ENTAAENGLTVR RNWIWTSYIINQAKKENTAAENGLTVRLQT AKKENTAAENGLTVRLQTFLSKRPMPLSAR K E N V R L 2 1 2 0 0 0 2 1 0 0 1 0 0 0 0 0 2 0 0 1 0 0 12 0 1273.6262 Q6AHZ7;Q12789;H3BU55 Q6AHZ7 1144 1155 DKFZp686A111;GTF3C1 General transcription factor 3C polypeptide 1 yes no 2 0.011614 98.04 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2495300 2495300 0 2495300 2495300 0 0 0 0 3033 1457 3111 11001;11002 16664;16665 16665 2 ENTDSVVMQPK LDRFVYRNPKPHKGKENTDSVVMQPKRKHF HKGKENTDSVVMQPKRKHFIKDIRHLPVNS K E N P K R 0 0 1 1 0 1 1 0 0 0 0 1 1 0 1 1 1 0 0 2 0 0 11 0 1246.5864 B2R5U7;Q03701 B2R5U7 771 781 CEBPZ CCAAT/enhancer-binding protein zeta no no 2 0.0066781 46.819 1 0.55718 0.77753 NaN 1 Median NaN NaN NaN 0 0 Median 0.55718 0.77753 NaN 1 0 Median 4529100 2634300 1894800 0 0 0 4529100 2634300 1894800 3034 693;1441 3112 11003 16666 16666 243 1 ENTEGEYSGIEHVIVDGVVQSIK GYKTPYTDVNIVTIRENTEGEYSGIEHVIV GIEHVIVDGVVQSIKLITEGASKRIAEFAF R E N I K L 0 0 1 1 0 1 4 3 1 3 0 1 0 0 0 2 1 0 1 4 0 0 23 0 2501.2286 H0YLI6;H0YMU3;B7Z9J8;B4DJB4;H0YL72;B4DSY4;Q53GF8;P50213 H0YLI6 97 119 IDH3A Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes no 3 4.9067E-07 98.684 2 0.23804 0.3088 NaN 1 Median 0.23804 0.3088 NaN 1 0 Median NaN NaN NaN 0 0 Median 17313000 15224000 2089200 17313000 15224000 2089200 0 0 0 3035 816 3113 11004;11005 16667;16668;16669 16667 3 ENTFECQNPR TDEGDNRVWCHVCERENTFECQNPRRCKWT HVCERENTFECQNPRRCKWTEPYCVIAAVS R E N P R R 0 1 2 0 1 1 2 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 10 0 1293.5408 H0YB07;E5RGJ8;A0A0A8K8F0;Q17RY6 H0YB07 49 58 LY6K;URLC10 Lymphocyte antigen 6K yes no 2 0.0025554 69.954 1 0.39107 0.52714 NaN 1 Median 0.39107 0.52714 NaN 1 0 Median NaN NaN NaN 0 0 Median 855820 628830 226980 855820 628830 226980 0 0 0 3036 412 3114 11006 16670 16670 1 ENVLIGDGAGFK SDTRGIVFEDVKVPKENVLIGDGAGFKVAM VPKENVLIGDGAGFKVAMGAFDKTRPVVAA K E N F K V 1 0 1 1 0 0 1 3 0 1 1 1 0 1 0 0 0 0 0 1 0 0 12 0 1218.6245 A0A0S2Z366;Q5T4U5;Q5HYG7;P11310;B7Z9I1;B4DWX6;B4DJE7;B4DVB1;A0A0S2Z3A5;B4DVE0 A0A0S2Z366 260 271 ACADM;DKFZp686M24262 Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.0024608 62.633 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6809200 6809200 0 6809200 6809200 0 0 0 0 3037 449 3115 11007 16671 16671 1 ENVLQYCR LYESVKKELDVKSQKENVLQYCRKSGLQTD LDVKSQKENVLQYCRKSGLQTDYATEKESA K E N C R K 0 1 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 8 0 1080.5022 P46013 P46013 255 262 MKI67 Antigen KI-67 yes yes 2 0.00016008 143.02 4 2 0.90773 1.2297 4.6387 5 Median 0.90773 1.219 3.226 3 0 Median 0.90306 1.2814 5.8283 2 0 Median 126250000 60358000 65894000 102720000 48060000 54658000 23534000 12298000 11237000 3038 1342 3116 11008;11009;11010;11011;11012;11013 16672;16673;16674;16675;16676;16677;16678;16679;16680;16681 16672 10 ENVPPGPEVCITHQEGEK KASGGEIKIHKMEQKENVPPGPEVCITHQE PPGPEVCITHQEGEKISANENSLAVRSTPA K E N E K I 0 0 1 0 1 1 4 2 1 1 0 1 0 0 3 0 1 0 0 2 0 0 18 0 2018.9368 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2;F8VRN8 F8VQE1 147 164 LIMA1 LIM domain and actin-binding protein 1 yes no 3 4.5984E-13 78.021 3 0.71516 0.89351 2.9776 3 Median 0.71516 0.89351 2.9776 3 0 Median NaN NaN NaN 0 0 Median 154960000 88905000 66054000 154960000 88905000 66054000 0 0 0 3039 834 3117 11014;11015;11016 16682;16683;16684;16685 16685 2 ENVTVLDK REPPEDEEEEDGREKENVTVLDKTLSVNDV EEDGREKENVTVLDKTLSVNDVACMAGLLE K E N D K T 0 0 1 1 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 8 0 916.48656 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DXB7 Q86XI2 602 609 NCAPG2 Condensin-2 complex subunit G2 yes no 2 0.030432 51.346 1 0.86887 1.06 NaN 1 Median 0.86887 1.06 NaN 1 0 Median NaN NaN NaN 0 0 Median 20294000 11044000 9249800 20294000 11044000 9249800 0 0 0 3040 1621 3118 11017 16686;16687 16687 2 ENVVNFIDCLVR ELRRSKKQTKFEVLRENVVNFIDCLVREYL VLRENVVNFIDCLVREYLLPPETQPLHEVV R E N V R E 0 1 2 1 1 0 1 0 0 1 1 0 0 1 0 0 0 0 0 3 0 0 12 0 1476.7395 B4E014;Q9UBD5 B4E014 491 502 ORC3 Origin recognition complex subunit 3 yes no 2 0.00075941 104.22 3 0.57376 0.7564 NaN 1 Median 0.57376 0.7564 NaN 1 0 Median NaN NaN NaN 0 0 Median 2003200 1468500 534680 2003200 1468500 534680 0 0 0 3041 882 3119 11018;11019;11020 16688;16689;16690;16691 16691 4 ENVYDELR DRFLICMLHKLGFDKENVYDELRQCIRNSP HKLGFDKENVYDELRQCIRNSPQFRFDWFL K E N L R Q 0 1 1 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 8 0 1036.4825 O60264;B7ZAX9;B4DZC0 O60264 967 974 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 0.012362 93.143 4 2 1.9879 2.861 1.3905 3 Median 2.066 2.8159 NaN 1 0 Median 1.9754 2.878 0.83727 2 0 Median 45182000 10964000 34218000 18611000 2177200 16434000 26571000 8786600 17784000 3042 1189 3120 11021;11022;11023;11024;11025;11026 16692;16693;16694;16695;16696;16697;16698 16694 7 ENYLEENLLYAPSLR AGWEEVLRWQDRSSRENYLEENLLYAPSLR ENYLEENLLYAPSLRFIHGLIKQFSENIYE R E N L R F 1 1 2 0 0 0 3 0 0 0 4 0 0 0 1 1 0 0 2 0 0 0 15 0 1822.9101 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 931 945 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.001742 75.479 1 1 0.70399 0.98968 45.012 2 Median 0.53268 0.71989 NaN 1 0 Median 0.9304 1.3606 NaN 1 0 Median 22229000 11685000 10544000 8040600 4264400 3776200 14189000 7420700 6767900 3043 93 3121 11027;11028 16699;16700 16699 1 EPAASAAAFPSQR AEPPPPPAPDMTFKKEPAASAAAFPSQRTS KKEPAASAAAFPSQRTSWGFLQSLVSIKQE K E P Q R T 5 1 0 0 0 1 1 0 0 0 0 0 0 1 2 2 0 0 0 0 0 0 13 0 1301.6364 Q9Y2X9;B3KND7 Q9Y2X9 103 115 ZNF281 Zinc finger protein 281 yes no 2 0.0147 38.783 1 1.1861 1.4932 NaN 1 Median NaN NaN NaN 0 0 Median 1.1861 1.4932 NaN 1 0 Median 1812300 1062700 749600 0 0 0 1812300 1062700 749600 3044 1811 3122 11029 16701;16702;16703 16703 3 EPAFEDITLESER ELDAVWEDIRERFVKEPAFEDITLESERKR VKEPAFEDITLESERKRIFKDFMHVLEHEC K E P E R K 1 1 0 1 0 0 4 0 0 1 1 0 0 1 1 1 1 0 0 0 0 0 13 0 1534.7151 B4DPY2;O75400;Q4ZG51 B4DPY2 701 713 PRPF40A;FNBP3 Pre-mRNA-processing factor 40 homolog A yes no 2 0.042498 73.632 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 909940 909940 0 909940 909940 0 0 0 0 3045 847 3123 11030 16704 16704 1 EPAPETADGPYLVIVEQPK EYDDFKLNSSIVEPKEPAPETADGPYLVIV ETADGPYLVIVEQPKQRGFRFRYGCEGPSH K E P P K Q 2 0 0 1 0 1 3 1 0 1 1 1 0 0 4 0 1 0 1 2 0 0 19 0 2052.0415 D3DR86;A0A1P8C958;Q00653;M0R119 D3DR86 29 47 NFKB2 Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit yes no 2 6.3975E-09 109.83 4 0.84188 1.0837 18.956 2 Median 0.84188 1.0837 18.956 2 0 Median NaN NaN NaN 0 0 Median 6507300 3446900 3060400 6507300 3446900 3060400 0 0 0 3046 526 3124 11031;11032;11033;11034 16705;16706;16707;16708;16709;16710;16711 16710 7 EPAQTEAAASTEPATR LERLQSRARERQQQREPAQTEAAASTEPAT PAQTEAAASTEPATRRRRRPRRRRRVNDAE R E P T R R 5 1 0 0 0 1 3 0 0 0 0 0 0 0 2 1 3 0 0 0 0 0 16 0 1628.7642 F1T0L5;Q8N8A6 F1T0L5 50 65 DDX51 ATP-dependent RNA helicase DDX51 yes no 2 0.0026431 41.092 1 2 0.39489 0.49101 23.736 3 Median 0.54061 0.72847 NaN 1 0 Median 0.38885 0.48335 2.2246 2 0 Median 3935600 2412500 1523100 910240 497030 413210 3025400 1915400 1109900 3047 1048 3125 11035;11036;11037 16712;16713;16714 16714 3 EPEAAAPAPGTGGDSVCGETHR VRCRRLAHLLASAQKEPEAAAPAPGTGGDS APGTGGDSVCGETHRALQGAMEKLQSRFME K E P H R A 4 1 0 1 1 0 3 4 1 0 0 0 0 0 3 1 2 0 0 1 0 0 22 0 2164.9444 Q08379;Q5HYE0;A0A087WYC0 Q08379 778 799 GOLGA2;DKFZp686K0319 Golgin subfamily A member 2 yes no 3 0.0032219 35.091 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2943100 2943100 0 2943100 2943100 0 0 0 0 3048 1449 3126 11038 16715 16715 1 EPEQEPVPAQFQK QRRNNEELVVSASCKEPEQEPVPAQFQKVK CKEPEQEPVPAQFQKVKPPKTNHKRGRK__ K E P Q K V 1 0 0 0 0 3 3 0 0 0 0 1 0 1 3 0 0 0 0 1 0 0 13 0 1525.7413 B4DES6;B7Z9P6;G3XAG1;Q96ME7;Q658M0 B4DES6 437 449 ZNF512;DKFZp666L156 Zinc finger protein 512 yes no 2 2.794E-25 192.64 4 2 0.69753 0.87707 19.342 6 Median 0.65131 0.81983 9.4093 4 0 Median 0.7701 1.1473 1.4145 2 0 Median 50953000 29582000 21370000 34297000 20572000 13725000 16655000 9009900 7645500 3049 799 3127 11039;11040;11041;11042;11043;11044 16716;16717;16718;16719;16720;16721;16722;16723 16719 8 EPESFPFVILGNK LSNWKKEFIYYADVKEPESFPFVILGNKID VKEPESFPFVILGNKIDISERQVSTEEAQA K E P N K I 0 0 1 0 0 0 2 1 0 1 1 1 0 2 2 1 0 0 0 1 0 0 13 0 1475.766 A0A024RBV5;P51151 A0A024RBV5 113 125 RAB9A Ras-related protein Rab-9A yes no 2 0.011117 93.556 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1941600 1941600 0 1941600 1941600 0 0 0 0 3050 283 3128 11045;11046 16724;16725 16724 2 EPFTIAQGK KKVERLTMQVSSLQREPFTIAQGKGQKLCE VSSLQREPFTIAQGKGQKLCEIERIHFFLS R E P G K G 1 0 0 0 0 1 1 1 0 1 0 1 0 1 1 0 1 0 0 0 0 0 9 0 989.5182 B4DNW3;P35659;D6RDA2;D6R9L5 P35659 76 84 DEK Protein DEK no no 1;2 0.00096989 113.5 5 0.82529 1.0822 5.1852 5 Median 0.82529 1.0822 5.1852 5 0 Median NaN NaN NaN 0 0 Median 511420000 284790000 226630000 511420000 284790000 226630000 0 0 0 3051 1322;843 3129 11047;11048;11049;11050;11051 16726;16727;16728;16729;16730;16731;16732;16733;16734 16730 9 EPGIPSLTPQAELPEPAVR NVCDKSSASIGDMEKEPGIPSLTPQAELPE PSLTPQAELPEPAVRSEKKRLRKPSKWLLE K E P V R S 2 1 0 0 0 1 3 1 0 1 2 0 0 0 5 1 1 0 0 1 0 0 19 0 2000.0579 B2RWP5;Q96L73;Q8NB95;Q96MN8;Q96DQ7 B2RWP5 981 999 NSD1 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 2 0.032771 25.718 1 0.72192 0.96557 NaN 1 Median 0.72192 0.96557 NaN 1 0 Median NaN NaN NaN 0 0 Median 3128400 1821400 1307000 3128400 1821400 1307000 0 0 0 3052 749 3130 11052 16735 16735 1 EPINSTTPFNSSK INNVLSKIGEVWASKEPINSTTPFNSSKIE SKEPINSTTPFNSSKIEEPSPIVYSLPAPE K E P S K I 0 0 2 0 0 0 1 0 0 1 0 1 0 1 2 3 2 0 0 0 0 0 13 0 1420.6834 Q8WYP5;B3KVE5 Q8WYP5 1070 1082 AHCTF1 Protein ELYS yes no 2 2.1376E-08 149.33 3 1 0.6746 0.94474 7.7793 2 Median 0.78483 0.99816 NaN 1 0 Median 0.57986 0.89417 NaN 1 0 Median 72729000 40988000 31740000 43979000 22607000 21372000 28749000 18381000 10369000 3053 1670 3131 11053;11054;11055;11056 16736;16737;16738;16739;16740 16736 5 EPIVGSTDYGKDEDSAEALLK YFADANEAESWMREKEPIVGSTDYGKDEDS TDYGKDEDSAEALLKKHEALMSDLSAYGSS K E P L K K 2 0 0 3 0 0 3 2 0 1 2 2 0 0 1 2 1 0 1 1 0 0 21 1 2236.0747 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 910 930 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 3 4.731E-20 138.46 4 0.82437 1.0208 16.643 4 Median 0.82437 1.0208 16.643 4 0 Median NaN NaN NaN 0 0 Median 70389000 42030000 28358000 70389000 42030000 28358000 0 0 0 3054 1476 3132 11057;11058;11059;11060 16741;16742;16743;16744;16745;16746;16747;16748;16749 16744 9 EPLLVTNGADNALR NAHSTAIAGLTFLHREPLLVTNGADNALRI REPLLVTNGADNALRIWIFDGPTGEGRLLR R E P L R I 2 1 2 1 0 0 1 1 0 0 3 0 0 0 1 0 1 0 0 1 0 0 14 0 1481.7838 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 289 302 WDR36 WD repeat-containing protein 36 yes no 2 6.7844E-05 100.69 3 2 0.6392 0.90089 10.715 5 Median 0.75769 1.0274 10.837 3 0 Median 0.5764 0.86403 5.9076 2 0 Median 49825000 28663000 21162000 18292000 10744000 7548300 31533000 17919000 13614000 3055 404 3133 11061;11062;11063;11064;11065 16750;16751;16752;16753;16754;16755 16753 6 EPLSLINVR ARPGPGVWDPNWDRREPLSLINVRKRNVES PNWDRREPLSLINVRKRNVESGEEELASKL R E P V R K 0 1 1 0 0 0 1 0 0 1 2 0 0 0 1 1 0 0 0 1 0 0 9 0 1039.6026 Q96HS1 Q96HS1 66 74 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.0021078 109.01 3 0.67726 0.91916 9.2415 3 Median 0.67726 0.91916 9.2415 3 0 Median NaN NaN NaN 0 0 Median 76169000 47192000 28977000 76169000 47192000 28977000 0 0 0 3056 1688 3134 11066;11067;11068 16756;16757;16758;16759;16760;16761 16759 6 EPLYVGVDDDK QTRKVEDLARISLKKEPLYVGVDDDKANAT SLKKEPLYVGVDDDKANATVDGLEQGYVVC K E P D K A 0 0 0 3 0 0 1 1 0 0 1 1 0 0 1 0 0 0 1 2 0 0 11 0 1248.5874 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254;Q59FR7;H7C452 Q4ZG72 258 268 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 0.00022019 107.45 4 2 1.0172 1.2812 12.762 6 Median 1.0992 1.4079 9.2655 4 0 Median 0.68812 1.0999 1.5761 2 0 Median 322450000 169850000 152600000 195770000 95313000 100460000 126680000 74541000 52139000 3057 242 3135 11069;11070;11071;11072;11073;11074 16762;16763;16764;16765;16766;16767;16768;16769;16770 16766 9 EPNPPIDEVISTPGVVAR QQLSATQKFRKLLSKEPNPPIDEVISTPGV PPIDEVISTPGVVARFVEFLKRKENCTLQF K E P A R F 1 1 1 1 0 0 2 1 0 2 0 0 0 0 4 1 1 0 0 3 0 0 18 0 1888.9894 Q5BKZ2;P52294;C9J352;C9JWD9;F2Z3G4;C9J4U1;C9JYI4 Q5BKZ2 113 130 KPNA1 Importin subunit alpha;Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed yes no 2 1.0031E-12 120.9 4 1 0.45188 0.60661 7.0174 3 Median 0.45188 0.60661 7.0174 3 0 Median NaN NaN NaN 0 0 Median 35357000 25255000 10103000 30986000 20883000 10103000 4371800 4371800 0 3058 1364 3136 11075;11076;11077;11078;11079 16771;16772;16773;16774;16775 16773 5 EPPGLIFNK EVVEATPEGACTEPREPPGLIFNKVEVSED ACTEPREPPGLIFNKVEVSEDEPASKAQRR R E P N K V 0 0 1 0 0 0 1 1 0 1 1 1 0 1 2 0 0 0 0 0 0 0 9 0 1013.5546 B3KNS8;O75683 B3KNS8 194 202 SURF6 Surfeit locus protein 6 yes no 2 0.018258 53.754 1 2 0.95217 1.2033 3.33 3 Plateau 0.95217 1.2033 NaN 1 0 Median 0.76918 1.1588 3.5627 2 0 Median 38098000 20323000 17775000 14235000 7072900 7162200 23862000 13250000 10612000 3059 760 3137 11080;11081;11082 16776;16777;16778 16778 3 EPPGLIFNKVEVSEDEPASK EVVEATPEGACTEPREPPGLIFNKVEVSED IFNKVEVSEDEPASKAQRRKEKRQRVKGNL R E P S K A 1 0 1 1 0 0 4 1 0 1 1 2 0 1 3 2 0 0 0 2 0 0 20 1 2184.095 B3KNS8;O75683 B3KNS8 194 213 SURF6 Surfeit locus protein 6 yes no 3 0.045447 13.592 1 1.0494 1.2907 NaN 1 Median 1.0494 1.2907 NaN 1 0 Median NaN NaN NaN 0 0 Median 7857900 3864400 3993500 7857900 3864400 3993500 0 0 0 3060 760 3138 11083 16779 16779 1 EPPGSTAGLPQEPK QTLFGKKKSFDPSAREPPGSTAGLPQEPKT REPPGSTAGLPQEPKTTAEDGVPAPPLLDP R E P P K T 1 0 0 0 0 1 2 2 0 0 1 1 0 0 4 1 1 0 0 0 0 0 14 0 1406.7042 Q9BTC0 Q9BTC0 1334 1347 DIDO1 Death-inducer obliterator 1 yes yes 2 0.00043314 62.924 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9100100 9100100 0 0 0 0 9100100 9100100 0 3061 1713 3139 11084;11085 16780;16781;16782 16781 3 EPPTDVTPTFLTTGVLSTLR HNVNRVVYIFGPPVKEPPTDVTPTFLTTGV VTPTFLTTGVLSTLRQADFEAHNILRESGY K E P L R Q 0 1 0 1 0 0 1 1 0 0 3 0 0 1 3 1 6 0 0 2 0 0 20 0 2144.1365 B4DUT7;A0A140VJK6;P49915 B4DUT7 519 538 GMPS GMP synthase [glutamine-hydrolyzing] yes no 2 0.013664 78.814 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3062 498 3140 11086 16783 16783 1 EPQGIIACCNPVPPLVR LPNHMMLKIAEELPKEPQGIIACCNPVPPL QGIIACCNPVPPLVRQQINEMHLLIQQARE K E P V R Q 1 1 1 0 2 1 1 1 0 2 1 0 0 0 4 0 0 0 0 2 0 0 17 0 1918.9757 Q01780;B4DKG8 Q01780 547 563 EXOSC10 Exosome component 10 yes no 2 1.1434E-42 196.02 3 0.61329 0.82285 13.619 3 Median 0.61329 0.82285 13.619 3 0 Median NaN NaN NaN 0 0 Median 14987000 8946500 6040900 14987000 8946500 6040900 0 0 0 3063 1433 3141 11087;11088;11089 16784;16785;16786;16787;16788 16784 5 EPSEVPTPK QPPVSPGTALVGSQKEPSEVPTPKRPRGRP LVGSQKEPSEVPTPKRPRGRPKGSKNKGAA K E P P K R 0 0 0 0 0 0 2 0 0 0 0 1 0 0 3 1 1 0 0 1 0 0 9 0 982.49713 Q5T6U8;Q6IPL9;P17096;B4DWA0;A0A024RCT9 P17096 47 55 HMGA1 High mobility group protein HMG-I/HMG-Y no no 2 0.00083172 119.21 5 2 0.77445 1.0181 13.857 6 Median 0.85327 1.1142 9.8146 4 0 Median 0.55666 0.87518 1.5475 2 0 Median 3604700000 2026900000 1577800000 2523900000 1333700000 1190200000 1080900000 693230000 387620000 3064 1275;1570 3142 11090;11091;11092;11093;11094;11095;11096 16789;16790;16791;16792;16793;16794;16795;16796;16797;16798;16799;16800;16801 16789 13 EPSGVAGVDGMLGR HLFLGRSLTLARPLKEPSGVAGVDGMLGRV KEPSGVAGVDGMLGRVPQSVVDEEDSGLQS K E P G R V 1 1 0 1 0 0 1 4 0 0 1 0 1 0 1 1 0 0 0 2 0 0 14 0 1343.6503 Q8TDD1 Q8TDD1 469 482 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 0.0020426 42.809 1 0.60018 0.8314 NaN 1 Median NaN NaN NaN 0 0 Median 0.60018 0.8314 NaN 1 0 Median 11181000 6687300 4493500 0 0 0 11181000 6687300 4493500 3065 1658 3143 11097 16802 16802 736 1 EPSVQEATSTSDILK KEKTPELPEPSVKVKEPSVQEATSTSDILK EPSVQEATSTSDILKVPKPEPIPEPKEPSP K E P L K V 1 0 0 1 0 1 2 0 0 1 1 1 0 0 1 3 2 0 0 1 0 0 15 0 1603.7941 A0A0S2Z4W1;A9Z1X7;B7Z7U0;A0A0S2Z4Z6;Q8IYB3;M0R088;E9PCT1;B4DED5 A0A0S2Z4W1 232 246 SRRM1 Serine/arginine repetitive matrix protein 1 yes no 2 1.7289E-09 148.13 3 2 0.49506 0.74065 8.259 2 Median NaN NaN NaN 0 0 Median 0.49506 0.74065 8.259 2 0 Median 23543000 16258000 7284000 4450000 4450000 0 19093000 11808000 7284000 3066 471 3144 11098;11099;11100;11101;11102 16803;16804;16805;16806;16807;16808;16809 16803 7 EPVTPSALVLMSR APSGLSTLPQRVLRKEPVTPSALVLMSRSN RKEPVTPSALVLMSRSNVQPTAAPGQKVME K E P S R S 1 1 0 0 0 0 1 0 0 0 2 0 1 0 2 2 1 0 0 2 0 0 13 0 1398.7541 B2RC06;Q96GD4;J3KTD6;J3KRF8 B2RC06 32 44 AURKB Aurora kinase B no no 2 0.0465 67.08 1 0.91668 1.3094 NaN 1 Median 0.91668 1.3094 NaN 1 0 Median NaN NaN NaN 0 0 Median 2485100 1433600 1051500 2485100 1433600 1051500 0 0 0 3067 731;1686 3145 11103 16810 16810 0 EPYQILLDGTFCQAALR AKKHLGFFRNNFGVREPYQILLDGTFCQAA YQILLDGTFCQAALRGRIQLREQLPRYLMG R E P L R G 2 1 0 1 1 2 1 1 0 1 3 0 0 1 1 0 1 0 1 0 0 0 17 0 1993.9931 Q9BRU9;E5RH13;E5RIC4;G3XAM4;E5RGP0 Q9BRU9 24 40 UTP23 rRNA-processing protein UTP23 homolog yes no 2 6.4909E-06 113.07 2 1.2185 1.7441 NaN 1 Median 1.2185 1.7441 NaN 1 0 Median NaN NaN NaN 0 0 Median 4560700 3086800 1473900 4560700 3086800 1473900 0 0 0 3068 1709 3146 11104;11105 16811;16812 16811 2 EQAAAAPFPSPAPASPAISVVGVSAGGHTLSRPPPAQVPR LMRAQAQEQERRERREQAAAAPFPSPAPAS GGHTLSRPPPAQVPREVLKVQTHLENPTRY R E Q P R E 9 2 0 0 0 2 1 3 1 1 1 0 0 1 9 5 1 0 0 4 0 0 40 1 3842.0228 A0A024QZ23;P19532;B4DIA5 A0A024QZ23 135 174 TFE3 Transcription factor E3 yes no 4 5.1072E-10 52.226 4 2 0.74021 0.99345 16.374 5 Median 0.76393 1.0651 17.621 3 0 Median 0.64944 0.94147 7.6007 2 0 Median 42097000 21142000 20955000 19965000 8291300 11674000 22132000 12851000 9281500 3069 4 3147 11106;11107;11108;11109;11110;11111 16813;16814;16815;16816;16817;16818;16819;16820;16821;16822 16818 10 EQADFALEALAK RIKVGRDYVQKAQTKEQADFALEALAKATY QTKEQADFALEALAKATYERLFRWLVLRLN K E Q A K A 4 0 0 1 0 1 2 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 12 0 1304.6612 Q7Z406;M0QY43;B3KWH4 Q7Z406 434 445 MYH14 Myosin-14 yes no 2 0.0011932 100.82 4 2 1.0175 1.3187 83.249 6 Median 1.0106 1.314 0.52344 4 0 Median 4.3629 6.5825 0.24731 2 0 Median 403160000 192350000 210810000 367660000 185570000 182090000 35507000 6784700 28722000 3070 1615 3148 11112;11113;11114;11115;11116;11117 16823;16824;16825;16826;16827;16828;16829;16830;16831;16832;16833;16834;16835;16836 16828 14 EQADFAVEALAK RIKVGRDVVQKAQTKEQADFAVEALAKATY QTKEQADFAVEALAKATYERLFRWILTRVN K E Q A K A 4 0 0 1 0 1 2 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 12 0 1290.6456 A0A0U4BW16;P35580 A0A0U4BW16 411 422 MYH10 Myosin-10 no no 2 0.042418 40.727 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1514500 1514500 0 1514500 1514500 0 0 0 0 3071 490;1320 3149 11118 16837 16837 1 EQAEAEVASLNR AERLQREVEGERRAREQAEAEVASLNRRIQ RAREQAEAEVASLNRRIQLVEEELDRAQER R E Q N R R 3 1 1 0 0 1 3 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 12 0 1315.6368 Q5HYB6;B2RDE1;A0A0S2Z4I4;A0A0S2Z4G8;A0A0S2Z4G4;A0A087WWU8;D6R904 Q5HYB6 43 54 DKFZp686J1372;TPM3 yes no 2 0.00099247 66.595 1 0.70128 0.93669 NaN 1 Median 0.70128 0.93669 NaN 1 0 Median NaN NaN NaN 0 0 Median 6084000 3419900 2664100 6084000 3419900 2664100 0 0 0 3072 465 3150 11119 16838 16838 1 EQAEIQIK LDKLLSSFKSLLEEKEQAEIQIKEESKTAV KSLLEEKEQAEIQIKEESKTAVEMLQNQLK K E Q I K E 1 0 0 0 0 2 2 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 8 0 957.51311 P49454 P49454 2340 2347 CENPF Centromere protein F yes yes 2 0.025222 87.696 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2333100 2333100 0 2333100 2333100 0 0 0 0 3073 1351 3151 11120;11121 16839;16840 16840 2 EQAELTGLR DGSLEKDRTLTPLGREQAELTGLRLASLGL LTPLGREQAELTGLRLASLGLKFNKIVHSS R E Q L R L 1 1 0 0 0 1 2 1 0 0 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1015.5298 Q96HS1 Q96HS1 126 134 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.010811 95.815 3 1 0.68849 0.93836 51.914 3 Median 0.68006 0.91631 3.3628 2 0 Median 1.5129 2.2498 NaN 1 0 Median 47430000 26851000 20579000 40784000 24044000 16740000 6646300 2807400 3838900 3074 1688 3152 11122;11123;11124;11125 16841;16842;16843;16844;16845 16842 5 EQALSTLQLEHTSTQALVSELLPAK LGQELKAWQEKFFQKEQALSTLQLEHTSTQ HTSTQALVSELLPAKHLCQQLQAEQAAAEK K E Q A K H 3 0 0 0 0 3 3 0 1 0 6 1 0 0 1 3 3 0 0 1 0 0 25 0 2706.444 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1340 1364 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 1.6247E-57 148.09 4 2 0.68355 0.85493 33.811 6 Median 0.71754 0.90201 7.0684 4 0 Median 0.29947 0.47565 3.5203 2 0 Median 342280000 226100000 116180000 183580000 106460000 77123000 158700000 119650000 39053000 3075 148;1499 3153 11126;11127;11128;11129;11130;11131 16846;16847;16848;16849;16850;16851;16852;16853;16854;16855;16856;16857 16851 12 EQDQRPLHPVANPHAEISTK WNIFSEASNSEPVNKEQDQRPLHPVANPHA PLHPVANPHAEISTKVPASKVKDAVEQQGE K E Q T K V 2 1 1 1 0 2 2 0 2 1 1 1 0 0 3 1 1 0 0 1 0 0 20 1 2266.1454 Q9NX58 Q9NX58 149 168 LYAR Cell growth-regulating nucleolar protein yes yes 3;4 8.7343E-33 138.28 7 1 0.96796 1.2798 16.563 8 Median 0.99493 1.3167 16.268 7 0 Median 0.76877 1.1323 NaN 1 0 Median 327540000 162510000 165030000 323770000 160920000 162840000 3771900 1586300 2185600 3076 1766 3154 11132;11133;11134;11135;11136;11137;11138;11139 16858;16859;16860;16861;16862;16863;16864;16865;16866;16867;16868;16869;16870;16871;16872;16873 16868 16 EQEAEPEEQEEDSSSDPR SDEEDEEFQFIKKAKEQEAEPEEQEEDSSS AEPEEQEEDSSSDPRLRRLQNRISEDVEER K E Q P R L 1 1 0 2 0 2 7 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 18 0 2089.8196 P55081 P55081 68 85 MFAP1 Microfibrillar-associated protein 1 yes yes 2 0.014559 72.891 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 266620 266620 0 266620 266620 0 0 0 0 3077 1377 3155 11140 16874 16874 1 EQELDTLK TKEKKDELCRLRNEKEQELDTLKRKSPSDL CRLRNEKEQELDTLKRKSPSDLWKEDLATF K E Q L K R 0 0 0 1 0 1 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 8 0 974.49204 P11388 P11388 1152 1159 TOP2A DNA topoisomerase 2-alpha yes yes 1;2 8.3978E-06 181.55 5 2 0.9049 1.2368 9.6201 6 Median 0.90518 1.1941 5.7625 4 0 Median 0.88686 1.3984 5.095 2 0 Median 1209300000 692720000 516620000 665690000 403070000 262620000 543650000 289640000 254010000 3078 1256 3156 11141;11142;11143;11144;11145;11146;11147 16875;16876;16877;16878;16879;16880;16881;16882;16883;16884;16885;16886;16887;16888 16877 14 EQELDTLKR TKEKKDELCRLRNEKEQELDTLKRKSPSDL RLRNEKEQELDTLKRKSPSDLWKEDLATFI K E Q K R K 0 1 0 1 0 1 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 9 1 1130.5932 P11388 P11388 1152 1160 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 2.1188E-15 166.3 6 3 0.83594 1.105 61.33 8 Median 0.85886 1.1389 3.6785 5 0 Median 0.21072 0.3498 2.6344 3 0 Median 539930000 280040000 259890000 483340000 233080000 250260000 56593000 46960000 9633300 3079 1256 3157 11148;11149;11150;11151;11152;11153;11154;11155;11156 16889;16890;16891;16892;16893;16894;16895;16896;16897;16898;16899;16900;16901;16902 16896 14 EQELHNLLEVVSQCCEASSSDITEK TVYFSEQWVSSLNEREQELHNLLEVVSQCC VSQCCEASSSDITEKSDGRKAAHEKQHNIF R E Q E K S 1 0 1 1 2 2 5 0 1 1 3 1 0 0 0 4 1 0 0 2 0 0 25 0 2904.3117 P52732;B2RAM6;Q59GZ5 P52732 841 865 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 3 0.0021723 60.814 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 799300 799300 0 799300 799300 0 0 0 0 3080 1366 3158 11157 16903 16903 1 EQELQQTLQQEQSVLDQLR LQAEEKAHAFAVQQKEQELQQTLQQEQSVL QQTLQQEQSVLDQLRGEAEAARRAAEEAEE K E Q L R G 0 1 0 1 0 7 3 0 0 0 4 0 0 0 0 1 1 0 0 1 0 0 19 0 2312.1608 Q15149 Q15149 2199 2217 PLEC Plectin yes yes 2 4.6467E-206 334.6 5 0.83974 1.1559 24.939 4 Median 0.83974 1.1559 24.939 4 0 Median NaN NaN NaN 0 0 Median 36606000 17816000 18789000 36606000 17816000 18789000 0 0 0 3081 1507 3159 11158;11159;11160;11161;11162 16904;16905;16906;16907;16908;16909;16910;16911;16912;16913;16914 16905 11 EQELQQTLQQEQSVLDQLRGEAEAAR LQAEEKAHAFAVQQKEQELQQTLQQEQSVL QSVLDQLRGEAEAARRAAEEAEEARVQAER K E Q A R R 3 2 0 1 0 7 5 1 0 0 4 0 0 0 0 1 1 0 0 1 0 0 26 1 2996.4799 Q15149 Q15149 2199 2224 PLEC Plectin yes yes 3 1.807E-56 157 4 0.89703 1.2094 39.661 4 Median 0.89703 1.2094 39.661 4 0 Median NaN NaN NaN 0 0 Median 88572000 46175000 42397000 88572000 46175000 42397000 0 0 0 3082 1507 3160 11163;11164;11165;11166 16915;16916;16917;16918;16919;16920;16921;16922 16920 8 EQELQQTLQQEQSVLDQLRGEAEAARR LQAEEKAHAFAVQQKEQELQQTLQQEQSVL SVLDQLRGEAEAARRAAEEAEEARVQAERE K E Q R R A 3 3 0 1 0 7 5 1 0 0 4 0 0 0 0 1 1 0 0 1 0 0 27 2 3152.581 Q15149 Q15149 2199 2225 PLEC Plectin yes yes 4 0.022202 47.564 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5057600 5057600 0 5057600 5057600 0 0 0 0 3083 1507 3161 11167 16923 16923 1 EQELTQAIK MEKILEEKARQRERKEQELTQAIKKKESEI RQRERKEQELTQAIKKKESEIEKESQRKSI K E Q I K K 1 0 0 0 0 2 2 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 9 0 1058.5608 Q9H501 Q9H501 801 809 ESF1 ESF1 homolog yes yes 2 0.015313 55.872 2 0.66696 0.99423 1.5928 2 Median NaN NaN NaN 0 0 Median 0.66696 0.99423 1.5928 2 0 Median 15497000 9053900 6442800 0 0 0 15497000 9053900 6442800 3084 1734 3162 11168;11169 16924;16925 16925 2 EQEPTERPLK GLTLKELQNRLRRKREQEPTERPLKGIQSR LRRKREQEPTERPLKGIQSRLRKKRREEGP R E Q L K G 0 1 0 0 0 1 3 0 0 0 1 1 0 0 2 0 1 0 0 0 0 0 10 1 1225.6303 Q9BTC0 Q9BTC0 173 182 DIDO1 Death-inducer obliterator 1 yes yes 2 0.0020745 104.01 1 2 0.62906 0.87904 4.9675 3 Median 0.65476 0.87904 NaN 1 0 Median 0.62411 0.91119 6.3836 2 0 Median 10306000 6281600 4024700 1511800 782600 729200 8794500 5499000 3295500 3085 1713 3163 11170;11171;11172 16926;16927;16928 16927 3 EQEVNILK TLDSTAAQQELRSKREQEVNILKKTLEEEA QELRSKREQEVNILKKTLEEEAKTHEAQIQ R E Q L K K 0 0 1 0 0 1 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 971.52876 A0A024R1N1;P35579;Q86XU5;A0A0U4BW16 A0A024R1N1 1166 1173 MYH9 Myosin-9 no no 2 0.0065911 94.662 3 1 1.0803 1.3844 5.5327 3 Median 1.0803 1.3844 5.5327 3 0 Median NaN NaN NaN 0 0 Median 245930000 117620000 128310000 241350000 117620000 123730000 4580000 0 4580000 3086 61;490 3164 11173;11174;11175;11176 16929;16930;16931;16932 16930 4 EQEVNILKK TLDSTAAQQELRSKREQEVNILKKTLEEEA ELRSKREQEVNILKKTLEEEAKTHEAQIQE R E Q K K T 0 0 1 0 0 1 2 0 0 1 1 2 0 0 0 0 0 0 0 1 0 0 9 1 1099.6237 A0A024R1N1;P35579;Q86XU5;A0A0U4BW16 A0A024R1N1 1166 1174 MYH9 Myosin-9 no no 2 2.1834E-05 141.52 3 1.1483 1.4056 36.916 3 Plateau 1.1483 1.4056 36.916 3 0 Plateau NaN NaN NaN 0 0 Median 45175000 22484000 22691000 45175000 22484000 22691000 0 0 0 3087 61;490 3165 11177;11178;11179 16933;16934;16935;16936 16935 4 EQEVPPVIITETPLREPADR GVQYLWSFVLENHRREQEVPPVIITETPLR PVIITETPLREPADRKKMLEILFELLHVPS R E Q D R K 1 2 0 1 0 1 4 0 0 2 1 0 0 0 4 0 2 0 0 2 0 0 20 1 2288.2012 Q9H568 Q9H568 92 111 ACTL8 Actin-like protein 8 yes yes 3 0.0033848 75.97 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6501100 6501100 0 6501100 6501100 0 0 0 0 3088 1735 3166 11180;11181 16937;16938 16937 2 EQFFSDEERK TTEELDVSIDILTSREQFFSDEERKYMAIN ILTSREQFFSDEERKYMAINQKKAYILVTP R E Q R K Y 0 1 0 1 0 1 3 0 0 0 0 1 0 2 0 1 0 0 0 0 0 0 10 1 1313.5888 Q6P0N0 Q6P0N0 630 639 MIS18BP1 Mis18-binding protein 1 yes yes 2 7.2979E-19 187.22 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4415800 4415800 0 4415800 4415800 0 0 0 0 3089 1588 3167 11182;11183;11184 16939;16940;16941 16940 3 EQGPYETYEGSPVSK TIYYGALEASCDLAKEQGPYETYEGSPVSK EQGPYETYEGSPVSKGILQYDMWNVTPTDL K E Q S K G 0 0 0 0 0 1 3 2 0 0 0 1 0 0 2 2 1 0 2 1 0 0 15 0 1669.7471 B4E0I8;B4DNN4;P23921;B4DS95;Q53GZ5;E9PL69;B4DXB0;B4DXD1 B4E0I8 452 466 RRM1 Ribonucleoside-diphosphate reductase;Ribonucleoside-diphosphate reductase large subunit yes no 2 3.0489E-20 171.99 5 0.45647 0.57613 NaN 1 Median 0.45647 0.57613 NaN 1 0 Median NaN NaN NaN 0 0 Median 21275000 18813000 2462000 21275000 18813000 2462000 0 0 0 3090 839 3168 11185;11186;11187;11188;11189 16942;16943;16944;16945;16946;16947;16948;16949;16950;16951 16946 10 EQGQAPITPQQGQALAK KKDLRAQPDTLRRLKEQGQAPITPQQGQAL GQAPITPQQGQALAKQIHAVRYLECSALQQ K E Q A K Q 3 0 0 0 0 5 1 2 0 1 1 1 0 0 2 0 1 0 0 0 0 0 17 0 1763.9166 Q6ICQ8;P84095 Q6ICQ8 131 147 ARHG;RHOG Rho-related GTP-binding protein RhoG yes no 2 1.8452E-14 151.7 3 1 0.48385 0.62361 28.369 3 Median 0.48385 0.62361 28.369 3 0 Median NaN NaN NaN 0 0 Median 16847000 8519400 8327500 14130000 8519400 5610800 2716800 0 2716800 3091 1432 3169 11190;11191;11192;11193 16952;16953;16954;16955;16956 16954 5 EQGVLSFWR KQYKGIIDCVVRIPKEQGVLSFWRGNLANV VVRIPKEQGVLSFWRGNLANVIRYFPTQAL K E Q W R G 0 1 0 0 0 1 1 1 0 0 1 0 0 1 0 1 0 1 0 1 0 0 9 0 1120.5665 Q6NVC0;P05141;Q6I9V5;Q59EI9;P12236 Q6NVC0 89 97 SLC25A5;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 2 0.03116 47.96 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1726800 0 1726800 0 0 0 1726800 0 1726800 3092 1234;1260 3170 11194 16957 16957 1 EQGVTFPSGDIQEQLIR YATILNAGTNTDGFKEQGVTFPSGDIQEQL GVTFPSGDIQEQLIRSLYQSAGVAPESFEY K E Q I R S 0 1 0 1 0 3 2 2 0 2 1 0 0 1 1 1 1 0 0 1 0 0 17 0 1915.964 A0A0U1RQF0;P49327 A0A0U1RQF0 258 274 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 4.1154E-13 107.99 4 1 0.73667 0.99555 8.2374 4 Median 0.73667 0.99555 8.2374 4 0 Median NaN NaN NaN 0 0 Median 54409000 25263000 29147000 42574000 25263000 17311000 11836000 0 11836000 3093 486 3171 11195;11196;11197;11198;11199 16958;16959;16960;16961;16962;16963;16964 16962 7 EQGYDVIAYLANIGQK YSGGLDTSCILVWLKEQGYDVIAYLANIGQ QGYDVIAYLANIGQKEDFEEARKKALKLGA K E Q Q K E 2 0 1 1 0 2 1 2 0 2 1 1 0 0 0 0 0 0 2 1 0 0 16 0 1780.8996 Q5T6L4;A8KAP9;P00966;A0A0S2Z3D8;Q5T6L6;A0A0S2Z3B6;A0A0S2Z3F1;Q5T6L5 Q5T6L4 26 41 ASS;ASS1 Argininosuccinate synthase yes no 2 1.9622E-08 136.7 4 0.64887 0.8278 6.6876 3 Median 0.64887 0.8278 6.6876 3 0 Median NaN NaN NaN 0 0 Median 16365000 9209500 7155900 16365000 9209500 7155900 0 0 0 3094 655 3172 11200;11201;11202;11203 16965;16966;16967;16968;16969 16965 5 EQIDIFEGIK DIEEVAASNPELIFKEQIDIFEGIKDSQAQ ELIFKEQIDIFEGIKDSQAQRMAENLGFVG K E Q I K D 0 0 0 1 0 1 2 1 0 3 0 1 0 1 0 0 0 0 0 0 0 0 10 0 1190.6183 A0A024R325;Q96I99;H0Y852;Q9Y436;Q3ZCW5;E9PDQ8;B7Z2D5 A0A024R325 191 200 SUCLG2;DKFZp586M2023 Succinyl-CoA ligase subunit beta;Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes no 2 0.0067924 88.495 1 0.28719 0.36957 NaN 1 Median 0.28719 0.36957 NaN 1 0 Median NaN NaN NaN 0 0 Median 1703700 1196700 506980 1703700 1196700 506980 0 0 0 3095 96 3173 11204 16970 16970 1 EQIGKVDEIFGQLR NKVPYFNAPVYLENKEQIGKVDEIFGQLRD KEQIGKVDEIFGQLRDFYFSVKLSENMKAS K E Q L R D 0 1 0 1 0 2 2 2 0 2 1 1 0 1 0 0 0 0 0 1 0 0 14 1 1630.8679 A0A024RDJ3;Q9NY12 A0A024RDJ3 108 121 NOLA1;GAR1 H/ACA ribonucleoprotein complex subunit 1 yes no 2;3 5.1265E-10 106.54 8 1 0.76364 1.0154 25.589 6 Median 0.82626 1.1144 26.404 5 0 Median 0.58383 0.88112 NaN 1 0 Median 80697000 43364000 37333000 72183000 37965000 34218000 8514300 5399000 3115300 3096 317 3174 11205;11206;11207;11208;11209;11210;11211;11212;11213 16971;16972;16973;16974;16975;16976;16977;16978;16979;16980;16981 16978 11 EQILEEFSK NNRLFVGSIPKSKTKEQILEEFSKVTEGLT PKSKTKEQILEEFSKVTEGLTDVILYHQPD K E Q S K V 0 0 0 0 0 1 3 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 9 0 1121.5605 Q05CK9;Q59GL1;B2R8Z8;O60506;B7Z645 Q05CK9 293 301 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 2 0.02567 48.423 1 0.41719 0.5337 NaN 1 Median 0.41719 0.5337 NaN 1 0 Median NaN NaN NaN 0 0 Median 5242900 3844100 1398700 5242900 3844100 1398700 0 0 0 3097 718 3175 11214 16982 16982 1 EQISDIDDAVR RKGISLNPEQWSQLKEQISDIDDAVRKL__ SQLKEQISDIDDAVRKL_____________ K E Q V R K 1 1 0 3 0 1 1 0 0 2 0 0 0 0 0 1 0 0 0 1 0 0 11 0 1259.5994 Q6IBA2;Q59G24;P53999;Q6E433 Q6IBA2 115 125 PC4;SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes no 2 0.00023485 108.43 3 2 0.57077 0.85647 14.033 5 Median 0.57077 0.7831 11.395 3 0 Median 0.57798 0.94666 4.6694 2 0 Median 408280000 262300000 145980000 182520000 117340000 65181000 225750000 144960000 80797000 3098 1372 3176 11215;11216;11217;11218;11219 16983;16984;16985;16986;16987;16988;16989;16990;16991 16988 9 EQITISQLSLVDLAGSER QAPLDADGDNVLQEKEQITISQLSLVDLAG TISQLSLVDLAGSERTNRTRAEGNRLREAG K E Q E R T 1 1 0 1 0 2 2 1 0 2 3 0 0 0 0 3 1 0 0 1 0 0 18 0 1958.032 H7BYN4;Q02241;H0YKQ5 H7BYN4 326 343 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 1.0807E-45 162.41 4 0.73889 0.98301 16.383 3 Median 0.73889 0.98301 16.383 3 0 Median NaN NaN NaN 0 0 Median 43047000 24612000 18436000 43047000 24612000 18436000 0 0 0 3099 1117 3177 11220;11221;11222;11223 16992;16993;16994;16995;16996;16997;16998 16998 7 EQITQHIADLSSK LTELEGWEELEDNEKEQITQHIADLSSKAA EKEQITQHIADLSSKAAGTPKKKAVVQAKL K E Q S K A 1 0 0 1 0 2 1 0 1 2 1 1 0 0 0 2 1 0 0 0 0 0 13 0 1468.7522 P49916;K7ERZ5;K7ENR9;Q96DF0 P49916 175 187 LIG3 DNA ligase 3 yes no 2;3 0.00086041 106.79 3 3 0.955 1.2925 26.448 5 Median 0.79197 1.004 4.5713 2 0 Median 1.2412 1.7271 15.888 3 0 Plateau 20773000 9835200 10938000 9063900 4145300 4918700 11709000 5689900 6019600 3100 1356 3178 11224;11225;11226;11227;11228;11229 16999;17000;17001;17002;17003;17004 17004 6 EQIVPKPEEEVAQK YMSSPCHIEMILTEKEQIVPKPEEEVAQKK KEQIVPKPEEEVAQKKK_____________ K E Q Q K K 1 0 0 0 0 2 4 0 0 1 0 2 0 0 2 0 0 0 0 2 0 0 14 1 1622.8516 A0A087WXM6;J3QQT2;J3KRX5;A0A024R261;A0A0A6YYL6;P18621;J3QLC8;A0A0A0MRF8 A0A087WXM6 154 167 RPL17;hCG_24487;RPL17-C18orf32 60S ribosomal protein L17 yes no 2;3 9.4611E-87 250.26 8 4 0.78632 0.95739 35.614 12 Median 0.79144 0.96673 4.7318 8 0 Median 0.29255 0.47558 1.8885 4 0 Median 3976600000 2409700000 1566900000 2841700000 1538000000 1303700000 1134900000 871740000 263120000 3101 81 3179 11230;11231;11232;11233;11234;11235;11236;11237;11238;11239;11240;11241 17005;17006;17007;17008;17009;17010;17011;17012;17013;17014;17015;17016;17017;17018;17019;17020;17021;17022;17023;17024;17025 17012 21 EQIVPKPEEEVAQKK YMSSPCHIEMILTEKEQIVPKPEEEVAQKK EQIVPKPEEEVAQKKK______________ K E Q K K K 1 0 0 0 0 2 4 0 0 1 0 3 0 0 2 0 0 0 0 2 0 0 15 2 1750.9465 A0A087WXM6;J3QQT2;J3KRX5;A0A024R261;A0A0A6YYL6;P18621;J3QLC8;A0A0A0MRF8 A0A087WXM6 154 168 RPL17;hCG_24487;RPL17-C18orf32 60S ribosomal protein L17 yes no 2;3;4 1.7981E-32 182.23 9 5 0.72632 0.81804 30.064 14 Median 0.77756 0.90958 19.251 9 0 Median 0.28784 0.49664 6.1736 5 0 Median 1690200000 1022300000 667970000 1317700000 738650000 579060000 372530000 283630000 88901000 3102 81 3180 11242;11243;11244;11245;11246;11247;11248;11249;11250;11251;11252;11253;11254;11255 17026;17027;17028;17029;17030;17031;17032;17033;17034;17035;17036;17037;17038;17039;17040;17041;17042;17043;17044;17045;17046;17047;17048;17049 17033 24 EQIYDVYR LVLDEADEMLNKGFKEQIYDVYRYLPPATQ MLNKGFKEQIYDVYRYLPPATQVVLISATL K E Q Y R Y 0 1 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 2 1 0 0 8 0 1084.5189 A0A024R8W0;P38919 A0A024R8W0 199 206 DDX48;EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 0.0088694 103.56 3 0.47339 0.64351 2.8836 2 Median 0.47339 0.64351 2.8836 2 0 Median NaN NaN NaN 0 0 Median 28936000 22528000 6408100 28936000 22528000 6408100 0 0 0 3103 206 3181 11256;11257;11258 17050;17051;17052 17050 3 EQLAELQSGFVK RTTISRALSQNRELKEQLAELQSGFVKLTN ELKEQLAELQSGFVKLTNENMEITSALQSE K E Q V K L 1 0 0 0 0 2 2 1 0 0 2 1 0 1 0 1 0 0 0 1 0 0 12 0 1347.7034 Q08379 Q08379 547 558 GOLGA2 Golgin subfamily A member 2 yes yes 2 0.010017 57.532 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3104 1449 3182 11259 17053 17053 1 EQLAQAMFDHIPVGVGSK LLRTNLDESDVQPVKEQLAQAMFDHIPVGV AQAMFDHIPVGVGSKGVIPMNAKDLEEALE K E Q S K G 2 0 0 1 0 2 1 2 1 1 1 1 1 1 1 1 0 0 0 2 0 0 18 0 1925.9669 Q9Y3I0;B4DNA0;B4DNG5 Q9Y3I0 141 158 RTCB tRNA-splicing ligase RtcB homolog yes no 3 0.00060764 49.537 2 0.78883 1.0003 NaN 1 Median 0.78883 1.0003 NaN 1 0 Median NaN NaN NaN 0 0 Median 10877000 8055300 2822000 10877000 8055300 2822000 0 0 0 3105 1819 3183;3184 11260;11261 17054;17055 17055 844 2 EQLAQAVAR PPSVNRTEIVSTGEKEQLAQAVARIKKIYE VSTGEKEQLAQAVARIKKIYEEKKKKTTTI K E Q A R I 3 1 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 9 0 984.53524 B2R5V9;A0A024R4E5;Q00341;Q6ZS03;H0Y394;B4DKR8;Q5HYC5;H7C0A4 B2R5V9 275 283 HDLBP;DKFZp686L08115 Vigilin yes no 2 0.0051849 72.492 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1400800 0 1400800 0 0 0 1400800 0 1400800 3106 122 3185 11262 17056 17056 1 EQLDNQLDAYMSK RGRGRGALARPVLTKEQLDNQLDAYMSKTK TKEQLDNQLDAYMSKTKGHLDAELDAYMAQ K E Q S K T 1 0 1 2 0 2 1 0 0 0 2 1 1 0 0 1 0 0 1 0 0 0 13 0 1553.7032 X6R700;Q9Y3Y2 X6R700 189 201 CHTOP Chromatin target of PRMT1 protein yes no 2 0.0028868 43.544 1 0.31091 0.4666 NaN 1 Median NaN NaN NaN 0 0 Median 0.31091 0.4666 NaN 1 0 Median 7777800 5675700 2102200 0 0 0 7777800 5675700 2102200 3107 1822 3186 11263 17057 17057 848 1 EQLELFQNIRPLFINK LYVMDLSEQCGHGLREQLELFQNIRPLFIN QLELFQNIRPLFINKPLIVVANKCDVKRIA R E Q N K P 0 1 2 0 0 2 2 0 0 2 3 1 0 2 1 0 0 0 0 0 0 0 16 1 2001.1047 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;B4DHR2;O60747 Q53GS0 267 282 GTPBP4 Nucleolar GTP-binding protein 1 yes no 3 1.3076E-18 157.33 3 1 0.70623 0.99917 11.491 4 Median 0.74173 0.96453 8.8905 3 0 Median 0.67244 1.1391 NaN 1 0 Median 55121000 31384000 23737000 33076000 17887000 15189000 22045000 13496000 8548300 3108 975 3187 11264;11265;11266;11267 17058;17059;17060;17061;17062;17063;17064;17065;17066;17067 17059 10 EQLETLRK PSFADMEVLYWTHVKEQLETLRKLQRREVA LYWTHVKEQLETLRKLQRREVAEQWLRPAE K E Q R K L 0 1 0 0 0 1 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 8 1 1015.5662 A0A0A6YYG7;Q6IBW4 A0A0A6YYG7 399 406 NCAPH2 Condensin-2 complex subunit H2 yes no 2 2.0199E-06 143.89 3 2 0.64629 0.91657 5.1682 4 Median 0.73871 0.96006 5.945 2 0 Median 0.55741 0.9004 1.9046 2 0 Median 55146000 35301000 19846000 22484000 14216000 8268400 32662000 21085000 11577000 3109 406 3188 11268;11269;11270;11271;11272 17068;17069;17070;17071;17072;17073;17074;17075 17069 8 EQLGEEIDSK SIEMPNISYAWKELKEQLGEEIDSKVKGMV WKELKEQLGEEIDSKVKGMVFLKGKLGVCF K E Q S K V 0 0 0 1 0 1 3 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1146.5404 Q9NR30;Q8NI92 Q9NR30 659 668 DDX21;OK/SW-cl.65 Nucleolar RNA helicase 2 yes no 2 0.00017141 93.649 3 2 0.60596 0.80596 4.9263 5 Median 0.67231 0.8463 6.1095 3 0 Median 0.49789 0.79719 1.5461 2 0 Median 272200000 174560000 97632000 153630000 94362000 59272000 118560000 80201000 38360000 3110 1756 3189 11273;11274;11275;11276;11277 17076;17077;17078;17079;17080;17081;17082 17082 7 EQLLQSNPVLEAFGNAK VAAVCGKGAEVNQVKEQLLQSNPVLEAFGN LLQSNPVLEAFGNAKTVRNDNSSRFGKYMD K E Q A K T 2 0 2 0 0 2 2 1 0 0 3 1 0 1 1 1 0 0 0 1 0 0 17 0 1856.9632 E9PDF6;B0I1S9;O43795;E7EQD9;Q05CR5;C9JYW1;Q14777;B2R643;Q9UBC5 E9PDF6 140 156 MYO1B;MYO1A Unconventional myosin-Ib;Unconventional myosin-Ia yes no 2 8.5503E-34 183.06 4 1.3402 1.7333 3.0421 3 Median 1.3402 1.7333 3.0421 3 0 Median NaN NaN NaN 0 0 Median 29740000 11140000 18599000 29740000 11140000 18599000 0 0 0 3111 665 3190 11278;11279;11280;11281 17083;17084;17085;17086;17087;17088 17084 6 EQLMTVLQAGK SEEEERDGDVDQGFREQLMTVLQAGKALGG QGFREQLMTVLQAGKALGGEDSENEEELGD R E Q G K A 1 0 0 0 0 2 1 1 0 0 2 1 1 0 0 0 1 0 0 1 0 0 11 0 1216.6486 Q9BQG0;I3L1L3;I3L311 Q9BQG0 758 768 MYBBP1A Myb-binding protein 1A yes no 2 0.011558 41.796 1 0.45075 0.62609 NaN 1 Median NaN NaN NaN 0 0 Median 0.45075 0.62609 NaN 1 0 Median 4275400 2631800 1643600 0 0 0 4275400 2631800 1643600 3112 1708 3191 11282 17089 17089 773 1 EQLRQEQALLEEIER EQIQAMPLADSQAVREQLRQEQALLEEIER EQLRQEQALLEEIERHGEKVEECQRFAKQY R E Q E R H 1 2 0 0 0 3 5 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 15 1 1882.9749 Q15149 Q15149 1383 1397 PLEC Plectin yes yes 3 2.0591E-15 123.72 4 0.94452 1.2861 8.952 4 Median 0.94452 1.2861 8.952 4 0 Median NaN NaN NaN 0 0 Median 99170000 50977000 48194000 99170000 50977000 48194000 0 0 0 3113 1507 3192 11283;11284;11285;11286 17090;17091;17092;17093;17094;17095 17093 6 EQLTPSQIMSLEK RAEWQVYKEEISRFKEQLTPSQIMSLEKEI FKEQLTPSQIMSLEKEIMDKHLKRKAMTKK K E Q E K E 0 0 0 0 0 2 2 0 0 1 2 1 1 0 1 2 1 0 0 0 0 0 13 0 1502.765 Q6LES8;E5KSX8;E5KSU5;Q00059;H7BYN3 Q6LES8 119 131 TFAM Transcription factor A, mitochondrial yes no 2 0.032394 39.625 1 0.98434 1.2486 NaN 1 Median 0.98434 1.2486 NaN 1 0 Median NaN NaN NaN 0 0 Median 5879700 3246000 2633700 5879700 3246000 2633700 0 0 0 3114 1002 3193 11287 17096 17096 1 EQMIDLQNLLTTQSPSVK TPNNRPDAPKEKKKKEQMIDLQNLLTTQSP IDLQNLLTTQSPSVKSLAVPTIEELEDEEE K E Q V K S 0 0 1 1 0 3 1 0 0 1 3 1 1 0 1 2 2 0 0 1 0 0 18 0 2044.0511 Q9BVJ6;B4E343 Q9BVJ6 556 573 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 8.175E-13 87.083 1 0.64096 0.99334 NaN 1 Median NaN NaN NaN 0 0 Median 0.64096 0.99334 NaN 1 0 Median 30756000 18154000 12603000 0 0 0 30756000 18154000 12603000 3115 1719 3194 11288 17097;17098 17097 780 2 EQNIVFNAETYSNLIK LNQKKGAYDIFLNAKEQNIVFNAETYSNLI QNIVFNAETYSNLIKLLMSEDYFTQAMEVK K E Q I K L 1 0 3 0 0 1 2 0 0 2 1 1 0 1 0 1 1 0 1 1 0 0 16 0 1881.9472 E5KNY5;P42704;B4DSR0 E5KNY5 1060 1075 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 4.726E-50 206.74 3 0.35917 0.4567 NaN 1 Median 0.35917 0.4567 NaN 1 0 Median NaN NaN NaN 0 0 Median 21234000 19777000 1457300 21234000 19777000 1457300 0 0 0 3116 1001 3195 11289;11290;11291 17099;17100;17101;17102;17103 17100 5 EQNKPDSSPLYIQNPFETSLNISK NFAFDKNSINIRQGREQNKPDSSPLYIQNP LYIQNPFETSLNISKNVSQSQLQKFVDLAR R E Q S K N 0 0 3 1 0 2 2 0 0 2 2 2 0 1 3 4 1 0 1 0 0 0 24 1 2748.3606 Q9NVV4 Q9NVV4 465 488 MTPAP Poly(A) RNA polymerase, mitochondrial yes yes 3 9.4918E-05 62.707 1 0.63477 0.76869 NaN 1 Median 0.63477 0.76869 NaN 1 0 Median NaN NaN NaN 0 0 Median 3434500 2089900 1344500 3434500 2089900 1344500 0 0 0 3117 1764 3196 11292 17104;17105;17106 17105 3 EQNLSSQVECLELEK RVAALHNDQEACKAKEQNLSSQVECLELEK EQNLSSQVECLELEKAQLLQGLDEAKNNYI K E Q E K A 0 0 1 0 1 2 4 0 0 0 3 1 0 0 0 2 0 0 0 1 0 0 15 0 1804.8513 P49454 P49454 2564 2578 CENPF Centromere protein F yes yes 2 7.8054E-34 214 4 0.9639 1.2302 33.791 3 Plateau 0.9639 1.2302 33.791 3 0 Plateau NaN NaN NaN 0 0 Median 22824000 16865000 5958600 22824000 16865000 5958600 0 0 0 3118 1351 3197 11293;11294;11295;11296 17107;17108;17109;17110;17111 17108 5 EQPPGYAIDTVQVNGQEK LQAFLGRGLGHQDTREQPPGYAIDTVQVNG PGYAIDTVQVNGQEKYLILCEVGTDGLLAT R E Q E K Y 1 0 1 1 0 3 2 2 0 1 0 1 0 0 2 0 1 0 1 2 0 0 18 0 1971.9538 Q8IXI1 Q8IXI1 448 465 RHOT2 Mitochondrial Rho GTPase 2 yes yes 2 1.6531E-05 116.79 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3119 1626 3198 11297 17112 17112 1 EQPQLTSTCHIAISNSENLLGK EDLSGIAEMFKTPVKEQPQLTSTCHIAISN TCHIAISNSENLLGKQFQGTDSGEEPLLPT K E Q G K Q 1 0 2 0 1 2 2 1 1 2 3 1 0 0 1 3 2 0 0 0 0 0 22 0 2439.2064 P46013;Q70L73 P46013 765 786 MKI67 Antigen KI-67 no no 3 6.6533E-18 94.384 4 1 0.92447 1.2048 5.6702 5 Median 0.92724 1.2162 1.6586 4 0 Median 0.68547 1.0783 NaN 1 0 Median 846610000 442470000 404140000 779230000 402240000 376980000 67385000 40230000 27156000 3120 1342;1604 3199 11298;11299;11300;11301;11302 17113;17114;17115;17116;17117;17118;17119;17120;17121;17122;17123;17124;17125 17122 13 EQQIVIQSSGGLSK NGIVHVSAKDKGTGREQQIVIQSSGGLSKD REQQIVIQSSGGLSKDDIENMVKNAEKYAE R E Q S K D 0 0 0 0 0 3 1 2 0 2 1 1 0 0 0 3 0 0 0 1 0 0 14 0 1472.7835 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z4T3;H0Y8S0 B7Z4V2 528 541 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 1.6769E-09 117.86 2 2 1.67 9.6413 143.54 4 Linear 0.50501 0.6266 20.331 2 0 Median 4.7329 7.4659 2.4172 2 0 Median 104540000 35686000 68849000 40001000 24838000 15163000 64535000 10848000 53686000 3121 910 3200 11303;11304;11305;11306 17126;17127;17128;17129;17130;17131 17126 6 EQQLLSTLK SQMAEKQLEESVSEKEQQLLSTLKCQDEEL ESVSEKEQQLLSTLKCQDEELEKMREVCEQ K E Q L K C 0 0 0 0 0 2 1 0 0 0 3 1 0 0 0 1 1 0 0 0 0 0 9 0 1058.5972 Q59HG1;O95239;B3KNC0 Q59HG1 959 967 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 2.3001E-05 137.14 4 1.0849 1.3694 45.998 4 Median 1.0849 1.3694 45.998 4 0 Median NaN NaN NaN 0 0 Median 142350000 63859000 78492000 142350000 63859000 78492000 0 0 0 3122 1216 3201 11307;11308;11309;11310 17132;17133;17134;17135;17136 17132 5 EQQLPVNEETLFQK FEAEEKLAEWVLTQREQQLPVNEETLFQKA REQQLPVNEETLFQKATKIGRSLEGGFKIS R E Q Q K A 0 0 1 0 0 3 3 0 0 0 2 1 0 1 1 0 1 0 0 1 0 0 14 0 1701.8574 Q7Z3K3;B4DSK8 Q7Z3K3 1040 1053 POGZ Pogo transposable element with ZNF domain yes no 2 2.8014E-14 159.94 5 1 0.84102 1.0652 35.038 4 Median 0.84102 1.0652 10.71 3 0 Plateau 1.3771 2.0353 NaN 1 0 Median 37898000 21509000 16389000 31584000 18659000 12924000 6314400 2849800 3464600 3123 1614 3202 11311;11312;11313;11314;11315;11316 17137;17138;17139;17140;17141;17142;17143;17144 17138 8 EQREEEVEEEEKEEDEEK ESEQESEEEILAQKKEQREEEVEEEEKEED EEEVEEEEKEEDEEKGDWKPRTRSNGRRKS K E Q E K G 0 1 0 1 0 1 12 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 18 2 2320.9667 B2R6A9;Q9BW71 B2R6A9 237 254 HIRIP3 HIRA-interacting protein 3 yes no 3 2.6845E-05 98.408 2 1.0226 1.2229 29.386 2 Median 1.0226 1.2229 29.386 2 0 Median NaN NaN NaN 0 0 Median 7610800 3544700 4066100 7610800 3544700 4066100 0 0 0 3124 696 3203 11317;11318 17145;17146;17147;17148 17146 4 EQRGEPETFLPLDYLEVKPTDEK VDSEKTGRDCIQYIKEQRGEPETFLPLDYL FLPLDYLEVKPTDEKLRELKGAKLVIDVIR K E Q E K L 0 1 0 2 0 1 5 1 0 0 3 2 0 1 3 0 2 0 1 1 0 0 23 2 2732.3545 Q14683;G8JLG1;Q6P2R1;Q6MZR8;A8K7A6;B7Z709 Q14683 562 584 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 4 0.00052083 54.869 1 0.70627 0.8588 NaN 1 Median 0.70627 0.8588 NaN 1 0 Median NaN NaN NaN 0 0 Median 7584100 4502900 3081200 7584100 4502900 3081200 0 0 0 3125 1492 3204 11319 17149 17149 1 EQSGTIYLQHADEEREK KELEDLLSPLEELVKEQSGTIYLQHADEER SGTIYLQHADEEREKTYKLAENIDAQLKRM K E Q E K T 1 1 0 1 0 2 4 1 1 1 1 1 0 0 0 1 1 0 1 0 0 0 17 1 2031.9498 M0QXN5;A0A024QZF1;P37198 M0QXN5 340 356 NUP62;hCG_19665 Nuclear pore glycoprotein p62 yes no 3 0.0033627 87.99 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1727600 1727600 0 1727600 1727600 0 0 0 0 3126 12 3205 11320 17150 17150 1 EQSILELGSLLAK KRDIQENDEEAVQVKEQSILELGSLLAKTG VKEQSILELGSLLAKTGQAAELGGLLKYVR K E Q A K T 1 0 0 0 0 1 2 1 0 1 4 1 0 0 0 2 0 0 0 0 0 0 13 0 1399.7922 O00231;B4DTS5;J3QRY4 O00231 47 59 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 2 0.0037986 126.66 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3127 1165 3206 11321 17151 17151 1 EQSLHSFHTLFCR CTPNIDGPNAKSVQREQSLHSFHTLFCRRC QREQSLHSFHTLFCRRCFKYDCFLHRKCNY R E Q C R R 0 1 0 0 1 1 1 0 2 0 2 0 0 2 0 2 1 0 0 0 0 0 13 0 1660.778 A0A090N8E9;Q15910;S4S3R8;Q75MP9;Q75MQ0;F2YMM1;B7Z8K5;G3XAL2;Q59H64;B7Z8L6;K7EIH5;A0A0A0MSY9;Q92800 A0A090N8E9 275 287 EZH2;EZH1 Histone-lysine N-methyltransferase EZH2;Histone-lysine N-methyltransferase EZH1 no no 3 0.0004816 93.011 3 1 0.73438 0.96785 8.7094 4 Median 0.85326 1.1366 10.492 3 0 Plateau 0.75152 0.97644 NaN 1 0 Median 47535000 25924000 21611000 44099000 24233000 19866000 3435800 1690500 1745300 3128 381;401 3207 11322;11323;11324;11325 17152;17153;17154;17155;17156;17157 17155 6 EQSQPCADNAVLSSGLTAAR AKEAMEHPYFYPVVKEQSQPCADNAVLSSG CADNAVLSSGLTAAR_______________ K E Q A R - 4 1 1 1 1 2 1 1 0 0 2 0 0 0 1 3 1 0 0 1 0 0 20 0 2073.9749 P19784;H3BV19;H3BSA1 P19784 331 350 CSNK2A2 Casein kinase II subunit alpha yes no 2 0.0031971 79.471 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1473100 1473100 0 1473100 1473100 0 0 0 0 3129 1284 3208 11326 17158 17158 1 EQSSYHGNQQSYPQEVHGSSR ______________________________ GNQQSYPQEVHGSSRLEEFSPRQAQMFQNF R E Q S R L 0 1 1 0 0 4 2 2 2 0 0 0 0 0 1 5 0 0 2 1 0 0 21 0 2404.0428 W5ZR30;Q9UGU0;I3L1M7 W5ZR30 6 26 TCF20 Transcription factor 20 yes no 3 1.2453E-05 86.258 2 0.69072 0.96356 NaN 1 Median 0.69072 0.96356 NaN 1 0 Median NaN NaN NaN 0 0 Median 2542800 1240600 1302200 2542800 1240600 1302200 0 0 0 3130 1783 3209 11327;11328 17159;17160;17161 17160 3 EQSTCNFQAIVISLK ALDNTNIGKVANYIKEQSTCNFQAIVISLK EQSTCNFQAIVISLKEEFYTKAESLIGVYP K E Q L K E 1 0 1 0 1 2 1 0 0 2 1 1 0 1 0 2 1 0 0 1 0 0 15 0 1736.8767 Q14683;G8JLG1 Q14683 1176 1190 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0010777 90.731 1 0.5619 0.71027 NaN 1 Median 0.5619 0.71027 NaN 1 0 Median NaN NaN NaN 0 0 Median 4675000 2215700 2459300 4675000 2215700 2459300 0 0 0 3131 1492 3210 11329 17162 17162 1 EQTEGEYSSLEHESAR GYMTRHNNLDLVIIREQTEGEYSSLEHESA QTEGEYSSLEHESARGVIECLKIVTRAKSQ R E Q A R G 1 1 0 0 0 1 5 1 1 0 1 0 0 0 0 3 1 0 1 0 0 0 16 0 1850.7919 A0A087X2E5;A0A087WZN1;O43837 A0A087X2E5 165 180 IDH3B Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 2;3 3.9212E-05 133.88 2 0.30223 0.41372 NaN 1 Median 0.30223 0.41372 NaN 1 0 Median NaN NaN NaN 0 0 Median 10409000 7111500 3298000 10409000 7111500 3298000 0 0 0 3132 368 3211 11330;11331 17163;17164;17165 17163 3 EQTEQILR RTFNCGVGAVLVVSKEQTEQILRGIQQHKE AVLVVSKEQTEQILRGIQQHKEEAWVIGSV K E Q L R G 0 1 0 0 0 2 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 8 0 1015.5298 Q3B7A7;Q59HH3;P22102;B4DJ93;A0A140TA71 Q3B7A7 744 751 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 0.007241 99.375 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5108600 5108600 0 5108600 5108600 0 0 0 0 3133 1289 3212 11332;11333 17166;17167 17167 2 EQVANSAFVER KETQKSIYYITGESKEQVANSAFVERVRKR GESKEQVANSAFVERVRKRGFEVVYMTEPI K E Q E R V 2 1 1 0 0 1 2 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 11 0 1248.6099 A0A024RD80;P08238;B4DMA2;B4DGL0;Q58FF7;Q9H6X9;A8K3W9 A0A024RD80 492 502 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 no no 2 1.9714E-06 133.99 4 2 0.45002 0.61455 130.14 6 Median 0.43006 0.59306 6.6671 4 0 Median 4.4874 7.2694 1.7918 2 0 Median 457710000 256490000 201220000 337380000 232740000 104630000 120330000 23746000 96583000 3134 312;598 3213 11334;11335;11336;11337;11338;11339 17168;17169;17170;17171;17172;17173;17174;17175;17176;17177;17178 17174 11 EQVEEDNEVSSGLK KEQLNLLSRAEEAKKEQVEEDNEVSSGLKQ KEQVEEDNEVSSGLKQNYDEMSPAGQISKE K E Q L K Q 0 0 1 1 0 1 4 1 0 0 1 1 0 0 0 2 0 0 0 2 0 0 14 0 1561.7108 B4DQW7;B4DL98;H0Y867;B4DTZ9;E7EU81;Q14789 B4DQW7 798 811 GOLGB1 Golgin subfamily B member 1 yes no 2 0.00068527 106.16 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1026000 1026000 0 1026000 1026000 0 0 0 0 3135 825 3214 11340;11341;11342 17179;17180;17181 17179 3 EQVEVVEFHSNK ILAAAVPPSSLKNNREQVEVVEFHSNKKRK NNREQVEVVEFHSNKKRKLTPDHNKNTKQA R E Q N K K 0 0 1 0 0 1 3 0 1 0 0 1 0 1 0 1 0 0 0 3 0 0 12 0 1443.6994 Q5TBH9;Q8NDD1;Q5TBI2;B4E0F7 Q5TBH9 126 137 C1orf131 Uncharacterized protein C1orf131 yes no 2 0.0022739 64.439 1 1 0.69597 1.0288 NaN 1 Median NaN NaN NaN 0 0 Median 0.69597 1.0288 NaN 1 0 Median 8949200 3698200 5251000 2927900 0 2927900 6021300 3698200 2323000 3136 1574 3215 11343;11344 17182;17183 17182 2 EQVHQGGVELQQLEAGLQEAGEEDTR ______________________________ QLEAGLQEAGEEDTRLKASLLQLTRELEEL K E Q T R L 2 1 0 1 0 5 6 4 1 0 3 0 0 0 0 0 1 0 0 2 0 0 26 0 2849.3428 B4E086;K7EJH0;K7EMX1;Q8NBT2;K7EJV2;K7ESQ2 B4E086 14 39 SPC24 Kinetochore protein Spc24 yes no 3 0.00012554 60.343 1 0.48599 0.68089 NaN 1 Median 0.48599 0.68089 NaN 1 0 Median NaN NaN NaN 0 0 Median 2840200 1985000 855200 2840200 1985000 855200 0 0 0 3137 884 3216 11345 17184;17185 17185 2 EQVHQGGVELQQLEAGLQEAGEEDTRLK ______________________________ EAGLQEAGEEDTRLKASLLQLTRELEELKE K E Q L K A 2 1 0 1 0 5 6 4 1 0 4 1 0 0 0 0 1 0 0 2 0 0 28 1 3090.5218 B4E086;K7EJH0;K7EMX1;Q8NBT2;K7EJV2;K7ESQ2 B4E086 14 41 SPC24 Kinetochore protein Spc24 yes no 4 3.3844E-24 107.09 3 0.59811 0.79965 12.394 3 Median 0.59811 0.79965 12.394 3 0 Median NaN NaN NaN 0 0 Median 39142000 25851000 13291000 39142000 25851000 13291000 0 0 0 3138 884 3217 11346;11347;11348 17186;17187;17188;17189 17187 3 EQVLEPMLNGTDK EITELPVRTWTQVYKEQVLEPMLNGTDKTP YKEQVLEPMLNGTDKTPALISDYKEYHTDT K E Q D K T 0 0 1 1 0 1 2 1 0 0 2 1 1 0 1 0 1 0 0 1 0 0 13 0 1472.7181 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80;Q6W6M6 Q71UH4 930 942 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.00070795 56.043 2 0.56755 0.84342 11.457 2 Median NaN NaN NaN 0 0 Median 0.56755 0.84342 11.457 2 0 Median 15608000 9693700 5914600 0 0 0 15608000 9693700 5914600 3139 1437 3218 11349;11350 17190;17191 17191 642 2 EQVLEPMLNGTEK EISELPVRTWTQTYKEQVLEPMLNGTEKTP YKEQVLEPMLNGTEKTPPLITDYREYHTDT K E Q E K T 0 0 1 0 0 1 3 1 0 0 2 1 1 0 1 0 1 0 0 1 0 0 13 0 1486.7337 P11388 P11388 937 949 TOP2A DNA topoisomerase 2-alpha yes yes 2 2.7502E-08 105.13 6 4 0.78724 1.1935 10.517 8 Median 0.9155 1.1656 15.842 4 0 Median 0.75082 1.1935 1.7059 4 0 Median 457400000 258820000 198580000 28858000 19066000 9792700 428540000 239750000 188790000 3140 1256 3219;3220 11351;11352;11353;11354;11355;11356;11357;11358;11359;11360 17192;17193;17194;17195;17196;17197;17198;17199;17200;17201;17202;17203 17200 507 11 EQVNDLFSR DNERLSKVEKARQLREQVNDLFSRKFGEAI KARQLREQVNDLFSRKFGEAIGMGFPVKVP R E Q S R K 0 1 1 1 0 1 1 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 9 0 1106.5356 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;B4DRA9;B4DM07;A0A087WW90;A0A0D9SF80;A0A0A0MSY2;Q86UP8;Q6EKJ0 X5D2J9 829 837 GTF2I;GTF2IRD2B;GTF2IRD2 General transcription factor II-I;General transcription factor II-I repeat domain-containing protein 2A;General transcription factor II-I repeat domain-containing protein 2B yes no 2 0.011214 75.043 3 2 0.8844 1.2218 77.216 4 Median 0.44352 0.60556 15.64 2 0 Median 1.6959 2.2836 4.818 2 0 Median 31397000 16841000 14556000 20051000 12535000 7515500 11347000 4306100 7040900 3141 651 3221 11361;11362;11363;11364;11365 17204;17205;17206;17207;17208 17207 5 EQVPSGAELER DQIGNMTSSQRRSKKEQVPSGAELERQQIL RSKKEQVPSGAELERQQILQEMRKRTPLHN K E Q E R Q 1 1 0 0 0 1 3 1 0 0 1 0 0 0 1 1 0 0 0 1 0 0 11 0 1213.5939 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;E9PMT2;A0A0A0MTE2 A0A1P7ZIM8 1071 1081 LMO7 LIM domain only protein 7 yes no 2 0.00070658 117.71 2 1 1.5443 2.0543 66.795 2 Median 0.94128 1.2809 NaN 1 0 Median 2.5337 3.2944 NaN 1 0 Median 15995000 3906900 12088000 13194000 2676700 10517000 2800700 1230300 1570400 3142 525 3222 11366;11367;11368 17209;17210;17211 17209 3 EQYSDAPEEIR AKRRALSSSVIRELKEQYSDAPEEIRDARH RELKEQYSDAPEEIRDARHPHVTRQSQEDQ K E Q I R D 1 1 0 1 0 1 3 0 0 1 0 0 0 0 1 1 0 0 1 0 0 0 11 0 1335.5943 Q8NEJ9;H0YJ17 Q8NEJ9 211 221 NGDN Neuroguidin yes no 2 4.9974E-05 73.985 2 2 0.39237 0.5677 18.196 2 Median NaN NaN NaN 0 0 Median 0.39237 0.5677 18.196 2 0 Median 16166000 11792000 4374300 2735700 2735700 0 13430000 9056200 4374300 3143 1654 3223 11369;11370;11371;11372 17212;17213;17214;17215;17216 17213 5 EQYSDAPEEIRDAR AKRRALSSSVIRELKEQYSDAPEEIRDARH KEQYSDAPEEIRDARHPHVTRQSQEDQHRI K E Q A R H 2 2 0 2 0 1 3 0 0 1 0 0 0 0 1 1 0 0 1 0 0 0 14 1 1677.7594 Q8NEJ9;H0YJ17 Q8NEJ9 211 224 NGDN Neuroguidin yes no 2;3 6.1891E-05 108.68 5 2 0.75265 1.0381 26.678 7 Median 0.79639 1.1008 10.715 5 0 Median 0.44724 0.67018 7.2283 2 0 Median 117600000 69416000 48185000 82290000 45025000 37265000 35312000 24391000 10921000 3144 1654 3224 11373;11374;11375;11376;11377;11378;11379 17217;17218;17219;17220;17221;17222;17223;17224;17225;17226;17227;17228 17218 12 ERDLELEMGDDYILDLQK ARKKRMETEESRKKRERDLELEMGDDYILD LELEMGDDYILDLQKYWDLMNLSEKHDKIP R E R Q K Y 0 1 0 4 0 1 3 1 0 1 4 1 1 0 0 0 0 0 1 0 0 0 18 1 2194.0464 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;B4DHR2;O60747 Q53GS0 398 415 GTPBP4 Nucleolar GTP-binding protein 1 yes no 3 0.0003743 42.309 1 0.41944 0.65313 NaN 1 Median NaN NaN NaN 0 0 Median 0.41944 0.65313 NaN 1 0 Median 7423100 3870700 3552400 0 0 0 7423100 3870700 3552400 3145 975 3225 11380 17229 17229 348 1 ERDSELSDTDSGCCLGQSESDK QLLVRQSLVLPHSTKERDSELSDTDSGCCL DTDSGCCLGQSESDKSSTHGEAAAETDSRP K E R D K S 0 1 0 4 2 1 3 2 0 0 2 1 0 0 0 5 1 0 0 0 0 0 22 1 2473.9809 A0A087WVR3;A0A087WTW0;Q96T88 A0A087WVR3 98 119 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 3 0.0079967 64.589 2 1.1623 1.4944 NaN 1 Median 1.1623 1.4944 NaN 1 0 Median NaN NaN NaN 0 0 Median 6750900 4132200 2618700 6750900 4132200 2618700 0 0 0 3146 337 3226 11381;11382 17230;17231 17230 2 ERDVYEELLTQAEIQGNINK DKMTNAKNRTENSERERDVYEELLTQAEIQ EELLTQAEIQGNINKVNTFSALANIDLALE R E R N K V 1 1 2 1 0 2 4 1 0 2 2 1 0 0 0 0 1 0 1 1 0 0 20 1 2361.1812 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;Q6P1N4 A4QPB0 283 302 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 3 7.8073E-08 106.73 3 0.54564 0.74257 11.814 2 Median 0.54564 0.74257 11.814 2 0 Median NaN NaN NaN 0 0 Median 13676000 9421500 4254000 13676000 9421500 4254000 0 0 0 3147 287 3227 11383;11384;11385 17232;17233;17234 17233 3 EREDECFSCGDAGQLVSCK KKQQGKRRTQGEITKEREDECFSCGDAGQL ECFSCGDAGQLVSCKKPGCPKVYHADCLNL K E R C K K 1 1 0 2 3 1 3 2 0 0 1 1 0 1 0 2 0 0 0 1 0 0 19 1 2245.9038 B2RWP5;Q96L73;Q658U6;Q9H6B5;A0A1D8GZ55;A0A1D8GZ56;Q9H6H8 B2RWP5 1847 1865 NSD1;DKFZp666C163 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 3 0.00027428 80.142 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3413600 2661500 752100 3413600 2661500 752100 0 0 0 3148 749 3228 11386 17235 17235 1 EREGAPEPASCVK SPQQSAALPRRYMLREREGAPEPASCVKET LREREGAPEPASCVKETPDPWQSLDPFDSL R E R V K E 2 1 0 0 1 0 3 1 0 0 0 1 0 0 2 1 0 0 0 1 0 0 13 1 1428.6667 A0A0A6YYG7;Q6IBW4;E5RJN3 A0A0A6YYG7 299 311 NCAPH2 Condensin-2 complex subunit H2 yes no 2 0.0013001 106.26 2 0.71211 0.95357 NaN 1 Median 0.71211 0.95357 NaN 1 0 Median NaN NaN NaN 0 0 Median 7334600 6139100 1195500 7334600 6139100 1195500 0 0 0 3149 406 3229 11387;11388 17236;17237 17236 2 ERELELQK EALEETWRNLQKIIKERELELQKEQRRQEE NLQKIIKERELELQKEQRRQEENDKLRQEF K E R Q K E 0 1 0 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 1 1043.5611 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16;Q14917 Q13813 2188 2195 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.00052559 126.62 1 0.86038 1.1205 NaN 1 Median 0.86038 1.1205 NaN 1 0 Median NaN NaN NaN 0 0 Median 22614000 11515000 11099000 22614000 11515000 11099000 0 0 0 3150 1476 3230 11389 17238 17238 1 ERFAGVDIR TLQYKLLEPVLLLGKERFAGVDIRVRVKGG VLLLGKERFAGVDIRVRVKGGGHVAQIYAI K E R I R V 1 2 0 1 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 9 1 1061.5618 P62249;M0R210;M0R3H0;A0A087WZ27;M0R1M5;M0QX76;Q6IPX4;B4DP32 P62249 61 69 RPS16;ZNF90 40S ribosomal protein S16 yes no 2;3 0.0007093 109.83 5 1 0.75002 1.0373 8.0788 5 Median 0.74588 1.0207 5.8237 4 0 Median 0.77776 1.1858 NaN 1 0 Median 279330000 148550000 130770000 262500000 139730000 122770000 16827000 8821600 8005800 3151 1400 3231 11390;11391;11392;11393;11394;11395 17239;17240;17241;17242;17243;17244;17245 17240 7 ERHPGSFDVVHVK TGGANLGRIGVITNRERHPGSFDVVHVKDA NRERHPGSFDVVHVKDANGNSFATRLSNIF R E R V K D 0 1 0 1 0 0 1 1 2 0 0 1 0 1 1 1 0 0 0 3 0 0 13 1 1505.7739 B2R491;P62701;Q96IR1;Q53HV1;C9JEH7;A4FU11;Q496E4;P22090 B2R491 199 211 RPS4X;RPS4Y1 40S ribosomal protein S4;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1 yes no 3;4 1.9613E-13 134.61 7 0.82934 1.0764 17.005 7 Median 0.82934 1.0764 17.005 7 0 Median NaN NaN NaN 0 0 Median 349050000 191720000 157330000 349050000 191720000 157330000 0 0 0 3152 681 3232 11396;11397;11398;11399;11400;11401;11402 17246;17247;17248;17249;17250;17251;17252;17253 17253 7 ERILEQER LEVHRFGITGYGKGKERILEQERAIMLGAK TGYGKGKERILEQERAIMLGAKPPKKSYVN K E R E R A 0 2 0 0 0 1 3 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 8 1 1071.5673 Q5TBH9;Q8NDD1;Q5TBI2;B4E0F7 Q5TBH9 188 195 C1orf131 Uncharacterized protein C1orf131 yes no 2 0.027276 87.308 2 0.88679 1.1791 3.5348 2 Median 0.88679 1.1791 3.5348 2 0 Median NaN NaN NaN 0 0 Median 26237000 13984000 12253000 26237000 13984000 12253000 0 0 0 3153 1574 3233 11403;11404 17254;17255 17255 2 ERLEDLNFPEIK RKLRDREIQLEISGKERLEDLNFPEIKRRK SGKERLEDLNFPEIKRRKMADRKDEDRKQF K E R I K R 0 1 1 1 0 0 3 0 0 1 2 1 0 1 1 0 0 0 0 0 0 0 12 1 1501.7777 Q9Y3T9;B3KNC3;Q9H9J5;Q8NAK7;B4DY21 Q9Y3T9 638 649 NOC2L Nucleolar complex protein 2 homolog yes no 2;3 0.0046938 74.46 2 3 0.70803 0.95323 10.887 3 Median 0.67861 0.9007 8.0169 2 0 Median 0.70867 1.058 NaN 1 0 Median 46513000 32046000 14468000 32377000 19121000 13256000 14136000 12924000 1211300 3154 1820 3234 11405;11406;11407;11408;11409 17256;17257;17258;17259;17260;17261 17261 6 ERLEQQVPVNQVFGQDEMIDVIGVTK QVNGGTVAEKLDWARERLEQQVPVNQVFGQ VFGQDEMIDVIGVTKGKGYKGVTSRWHTKK R E R T K G 0 1 1 2 0 4 3 2 0 2 1 1 1 1 1 0 1 0 0 5 0 0 26 1 2970.5121 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;B3KS36;Q49AJ9;Q9BT63;H7C422;H7C3M2;B5MCW2 P39023 199 224 RPL3;rpl3 60S ribosomal protein L3 yes no 3 2.9775E-37 131.65 10 1 0.6785 0.90862 24.025 11 Median 0.68132 0.89753 24.16 10 0 Median 0.66598 1.2172 NaN 1 0 Median 934980000 544500000 390480000 503320000 290750000 212570000 431660000 253750000 177910000 3155 1330 3235;3236 11410;11411;11412;11413;11414;11415;11416;11417;11418;11419;11420 17262;17263;17264;17265;17266;17267;17268;17269;17270;17271;17272;17273;17274;17275;17276;17277;17278;17279;17280 17279 556 19 ERLPTTAQQEDPEK CHQPDLAGLEALRQRERLPTTAQQEDPEKI RERLPTTAQQEDPEKIQVQLCFKTCSPESQ R E R E K I 1 1 0 1 0 2 3 0 0 0 1 1 0 0 2 0 2 0 0 0 0 0 14 1 1640.8006 Q4VC44;I3L188;J3KNW1;B3KPY2;B3KP60;I3L1A7;I3L287 Q4VC44 672 685 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 2;3 1.591E-18 177.16 3 4 0.52265 0.72865 15.51 4 Median 0.61616 0.81255 15.252 2 0 Median 0.4419 0.6719 11.304 2 0 Median 39278000 30872000 8405300 15345000 10358000 4987100 23933000 20514000 3418300 3156 1536 3237 11421;11422;11423;11424;11425;11426;11427 17281;17282;17283;17284;17285;17286;17287;17288;17289 17283 9 ERLTADPGGSSETSSQVLENHTK IPLKSATAKGKKPSKERLTADPGGSSETSS GSSETSSQVLENHTKPKTSKGTKQEETFAK K E R T K P 1 1 1 1 0 1 3 2 1 0 2 1 0 0 1 4 3 0 0 1 0 0 23 1 2442.1623 A0A024R2M8;X5DRB1;A8K146;Q01831;D9I4E1;D2CPJ1;D2CPJ9;D2CPI8 A0A024R2M8 337 359 XPC DNA repair protein complementing XP-C cells no no 3 8.9045E-16 142.22 3 0.54716 0.72181 NaN 1 Median 0.54716 0.72181 NaN 1 0 Median NaN NaN NaN 0 0 Median 19021000 13989000 5032000 19021000 13989000 5032000 0 0 0 3157 89;976 3238 11428;11429;11430 17290;17291;17292;17293 17290 4 ERLTADPGGSSETSSQVLENHTKPK IPLKSATAKGKKPSKERLTADPGGSSETSS SETSSQVLENHTKPKTSKGTKQEETFAKGT K E R P K T 1 1 1 1 0 1 3 2 1 0 2 2 0 0 2 4 3 0 0 1 0 0 25 2 2667.31 A0A024R2M8;X5DRB1;A8K146;Q01831;D9I4E1;D2CPJ1;D2CPJ9;D2CPI8 A0A024R2M8 337 361 XPC DNA repair protein complementing XP-C cells no no 4 8.2297E-05 61.111 3 0.57514 0.69946 15.722 3 Median 0.57514 0.69946 15.722 3 0 Median NaN NaN NaN 0 0 Median 30889000 16599000 14291000 30889000 16599000 14291000 0 0 0 3158 89;976 3239 11431;11432;11433 17294;17295;17296;17297;17298 17294 5 ERLYPLR NKHEENLKTKKQQRKERLYPLRKYAVKA__ KTKKQQRKERLYPLRKYAVKA_________ K E R L R K 0 2 0 0 0 0 1 0 0 0 2 0 0 0 1 0 0 0 1 0 0 0 7 1 945.5396 P42766 P42766 111 117 RPL35 60S ribosomal protein L35 yes yes 2 1.3855E-07 168.45 2 0.78403 1.064 0.85801 2 Median 0.78403 1.064 0.85801 2 0 Median NaN NaN NaN 0 0 Median 258270000 147870000 110400000 258270000 147870000 110400000 0 0 0 3159 1340 3240 11434;11435 17299;17300 17299 2 ERLYPLRK NKHEENLKTKKQQRKERLYPLRKYAVKA__ TKKQQRKERLYPLRKYAVKA__________ K E R R K Y 0 2 0 0 0 0 1 0 0 0 2 1 0 0 1 0 0 0 1 0 0 0 8 2 1073.6346 P42766 P42766 111 118 RPL35 60S ribosomal protein L35 yes yes 3 0.0057257 96.668 4 0.86303 1.1224 14.016 4 Median 0.86303 1.1224 14.016 4 0 Median NaN NaN NaN 0 0 Median 2310100000 1242600000 1067500000 2310100000 1242600000 1067500000 0 0 0 3160 1340 3241 11436;11437;11438;11439 17301;17302;17303;17304;17305;17306;17307;17308 17305 8 ERNGLSLAALK PPVSELITKAVAASKERNGLSLAALKKALA AASKERNGLSLAALKKALAAGGYDVEKNNS K E R L K K 2 1 1 0 0 0 1 1 0 0 3 1 0 0 0 1 0 0 0 0 0 0 11 1 1170.6721 P16401 P16401 56 66 HIST1H1B Histone H1.5 yes yes 2;3 3.3248E-11 157.25 7 4 0.6403 0.84995 8.9726 10 Median 0.65862 0.86222 4.5975 6 0 Median 0.43294 0.74852 2.7625 4 0 Median 2204300000 1373800000 830460000 1445100000 859220000 585840000 759190000 514580000 244610000 3161 1273 3242 11440;11441;11442;11443;11444;11445;11446;11447;11448;11449;11450 17309;17310;17311;17312;17313;17314;17315;17316;17317;17318;17319;17320;17321;17322;17323;17324;17325;17326;17327;17328;17329 17316 21 ERNGLSLAALKK PPVSELITKAVAASKERNGLSLAALKKALA ASKERNGLSLAALKKALAAGGYDVEKNNSR K E R K K A 2 1 1 0 0 0 1 1 0 0 3 2 0 0 0 1 0 0 0 0 0 0 12 2 1298.767 P16401 P16401 56 67 HIST1H1B Histone H1.5 yes yes 3 2.8692E-12 128.21 4 2 0.6962 0.86908 14.6 6 Median 0.71118 0.89716 4.7032 4 0 Median 0.3829 0.68766 3.166 2 0 Median 1125600000 664450000 461110000 975850000 559900000 415940000 149710000 104550000 45162000 3162 1273 3243 11451;11452;11453;11454;11455;11456 17330;17331;17332;17333;17334;17335;17336;17337;17338 17335 9 ERNTDQASMPDNTAAQK VISGVLQLGNIVFKKERNTDQASMPDNTAA NTDQASMPDNTAAQKVSHLLGINVTDFTRG K E R Q K V 3 1 2 2 0 2 1 0 0 0 0 1 1 0 1 1 2 0 0 0 0 0 17 1 1875.8381 A0A024R1N1;P35579;Q86XU5;B4E3S1;A0A0U4BW16 A0A024R1N1 357 373 MYH9 Myosin-9 no no 3 0.043328 14.254 1 0.78532 1.004 NaN 1 Median 0.78532 1.004 NaN 1 0 Median NaN NaN NaN 0 0 Median 3071600 1622500 1449100 3071600 1622500 1449100 0 0 0 3163 61;490 3244 11457 17339 17339 1 ERPGEQSEVAQLIQQTLEQER VLRNTKGRVRFMIGRERPGEQSEVAQLIQQ SEVAQLIQQTLEQERWQREMMEQRYAQYGE R E R E R W 1 2 0 0 0 5 5 1 0 1 2 0 0 0 1 1 1 0 0 1 0 0 21 1 2467.2303 D3DTX6;Q96SB3;B3KNT0;Q96B17 D3DTX6 583 603 PPP1R9B Neurabin-2 yes no 3 2.4028E-19 133.38 3 0.83197 1.0923 11.591 3 Median 0.83197 1.0923 11.591 3 0 Median NaN NaN NaN 0 0 Median 24890000 14681000 10209000 24890000 14681000 10209000 0 0 0 3164 980 3245 11458;11459;11460 17340;17341;17342;17343 17340 4 ERPPEEVAAR PTPALSEEASSSSIRERPPEEVAARLAQQE SSSIRERPPEEVAARLAQQEKQEQVKIESL R E R A R L 2 2 0 0 0 0 3 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 10 1 1152.5887 B4DS66;C9J406;Q16891;B9A067;B4DQY2;B4DKR1;Q05DN3;B4E2B5;Q3B7X4;A0A087WYS0 Q16891 196 205 IMMT MICOS complex subunit MIC60 no no 2 0.0053654 112.11 2 2 0.82909 1.1759 72.973 4 Median 0.44725 0.61856 4.8147 2 0 Median 1.513 2.187 1.7129 2 0 Median 31536000 14675000 16861000 10755000 6933100 3822100 20781000 7741700 13039000 3165 1524;854 3246 11461;11462;11463;11464 17344;17345;17346;17347;17348;17349 17348 6 ERPPFIPEGVVAR LNRLHLAIPTRRDDKERPPFIPEGVVARKK DKERPPFIPEGVVARKKRMETEESRKKRER K E R A R K 1 2 0 0 0 0 2 1 0 1 0 0 0 1 3 0 0 0 0 2 0 0 13 1 1465.8041 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;B4DHR2 Q53GS0 372 384 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2;3 0.00016926 97.779 7 2 0.72364 0.99137 3.7081 9 Median 0.7344 1.0023 2.8868 7 0 Median 0.59199 0.94419 2.7093 2 0 Median 669250000 371970000 297280000 529070000 289960000 239110000 140180000 82013000 58163000 3166 975 3247 11465;11466;11467;11468;11469;11470;11471;11472;11473 17350;17351;17352;17353;17354;17355;17356;17357;17358;17359;17360;17361;17362;17363;17364;17365 17351 16 ERPPNPIEFLASYLLK TVVPILLQGLAVLAKERPPNPIEFLASYLL RPPNPIEFLASYLLKNKAQFEDRN______ K E R L K N 1 1 1 0 0 0 2 0 0 1 3 1 0 1 3 1 0 0 1 0 0 0 16 1 1886.0302 Q9C005 Q9C005 75 90 DPY30 Protein dpy-30 homolog yes yes 3 0.00056324 84.403 1 0.55287 0.74275 NaN 1 Median 0.55287 0.74275 NaN 1 0 Median NaN NaN NaN 0 0 Median 5155400 3353500 1801900 5155400 3353500 1801900 0 0 0 3167 1728 3248 11474 17366 17366 1 ERPQDRPEDLDVPPALADFIHQQR NAQKPLPQALSKERRERPQDRPEDLDVPPA LDVPPALADFIHQQRTQQVEQDMFAHPYQY R E R Q R T 2 3 0 4 0 3 2 0 1 1 2 0 0 1 4 0 0 0 0 1 0 0 24 2 2841.4158 Q01780;B4DKG8;B4DFE4;Q59G73 Q01780 222 245 EXOSC10 Exosome component 10 yes no 4 1.7397E-16 120.9 2 2 0.49804 0.58498 43.35 4 Median 0.71387 0.89553 42.012 2 0 Median 0.41847 0.48359 8.7086 2 0 Median 39639000 23236000 16403000 18481000 10592000 7888700 21158000 12644000 8514200 3168 1433 3249 11475;11476;11477;11478 17367;17368;17369;17370;17371;17372;17373;17374;17375 17368 9 ERPTPSLNNNCTTSEDSLVLYNR TKVEATKNETSAPFKERPTPSLNNNCTTSE NNCTTSEDSLVLYNRVAVQGDVVRELKAKK K E R N R V 0 2 4 1 1 0 2 0 0 0 3 0 0 0 2 3 3 0 1 1 0 0 23 1 2679.2559 P07814;V9GYZ6;Q3KQZ8;H6WCP5 P07814 734 756 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 3 5.8939E-40 175.02 4 0.49529 0.68044 7.5713 4 Median 0.49529 0.68044 7.5713 4 0 Median NaN NaN NaN 0 0 Median 61027000 42401000 18626000 61027000 42401000 18626000 0 0 0 3169 1242 3250 11479;11480;11481;11482 17376;17377;17378;17379;17380;17381;17382;17383;17384;17385;17386;17387 17381 12 ERQQFEGYGLEIPDILNASNLK RHCSRETVIKQTMERERQQFEGYGLEIPDI YGLEIPDILNASNLKTFR____________ R E R L K T 1 1 2 1 0 2 3 2 0 2 3 1 0 1 1 1 0 0 1 0 0 0 22 1 2533.2813 D6RA57;H0Y9X1;Q96EY4 D6RA57 120 141 TMA16 Translation machinery-associated protein 16 yes no 3 0.0018451 50.776 1 0.69048 0.94627 NaN 1 Median 0.69048 0.94627 NaN 1 0 Median NaN NaN NaN 0 0 Median 1820700 1065900 754810 1820700 1065900 754810 0 0 0 3170 989 3251 11483 17388;17389 17388 2 ERSGVSLAALK PPVSELITKAVAASKERSGVSLAALKKALA AASKERSGVSLAALKKALAAAGYDVEKNNS K E R L K K 2 1 0 0 0 0 1 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 11 1 1129.6455 B2R984;A3R0T8;P10412;Q4VB24;A3R0T7;P16402;P16403 P16403 53 63 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 2;3 4.5282E-11 136.86 8 3 0.78556 1.1082 9.3353 11 Median 0.82494 1.0929 10.398 8 0 Median 0.69761 1.1399 6.7969 3 0 Median 5845100000 3021600000 2823600000 5295700000 2709400000 2586300000 549440000 312190000 237250000 3171 542;1274 3252 11484;11485;11486;11487;11488;11489;11490;11491;11492;11493;11494 17390;17391;17392;17393;17394;17395;17396;17397;17398;17399;17400;17401;17402;17403;17404;17405;17406;17407;17408;17409;17410;17411 17403 22 ERSGVSLAALKK PPVSELITKAVAASKERSGVSLAALKKALA ASKERSGVSLAALKKALAAAGYDVEKNNSR K E R K K A 2 1 0 0 0 0 1 1 0 0 2 2 0 0 0 2 0 0 0 1 0 0 12 2 1257.7405 B2R984;A3R0T8;P10412;Q4VB24;A3R0T7;P16402;P16403 P16403 53 64 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 2;3 3.3183E-05 84.365 6 1 0.85435 1.0893 16.3 7 Median 0.86633 1.0833 14.481 6 0 Median 0.73985 1.3077 NaN 1 0 Median 938390000 522770000 415620000 918880000 511800000 407080000 19511000 10971000 8539700 3172 542;1274 3253 11495;11496;11497;11498;11499;11500;11501 17412;17413;17414;17415;17416;17417;17418;17419 17415 6 ERSTSEPAVPPEEAEPHTEPEEQVPVEAEPQNIEDEAK GDFDVDDAKVLLGLKERSTSEPAVPPEEAE VPVEAEPQNIEDEAKEQIQSLLHEMVHAEH K E R A K E 4 1 1 1 0 2 12 0 1 1 0 1 0 0 7 2 2 0 0 3 0 0 38 1 4222.9302 E5RG29;B7ZM96;B4DQ07;A0A0A0MSK8;Q6PJH4;E5RG56;B3GQE5;B8Y0L3;Q12797;A0A087WUJ2;A8K721 E5RG29 82 119 ASPH Aspartyl/asparaginyl beta-hydroxylase yes no 4 0.038952 7.8739 1 0.80037 1.0322 NaN 1 Median 0.80037 1.0322 NaN 1 0 Median NaN NaN NaN 0 0 Median 4734600 2330400 2404200 4734600 2330400 2404200 0 0 0 3173 398 3254 11502 17420;17421 17421 2 ERSVFDIPIFTEEFLNHSK ARQATHDHEKETEVKERSVFDIPIFTEEFL FDIPIFTEEFLNHSKAREAELRQLRKSNME K E R S K A 0 1 1 1 0 0 3 0 1 2 1 1 0 3 1 2 1 0 0 1 0 0 19 1 2307.1535 B4DMG1;Q9NP66 B4DMG1 99 117 HMG20A High mobility group protein 20A yes no 3 0.030077 41.257 1 0.76147 1.0206 NaN 1 Median 0.76147 1.0206 NaN 1 0 Median NaN NaN NaN 0 0 Median 3095100 1635300 1459800 3095100 1635300 1459800 0 0 0 3174 832 3255 11503 17422 17422 1 ERTNEGVIEFR FMRQAGEVTYADAHKERTNEGVIEFRSYSD DAHKERTNEGVIEFRSYSDMKRALDKLDGT K E R F R S 0 2 1 0 0 0 3 1 0 1 0 0 0 1 0 0 1 0 0 1 0 0 11 1 1348.6735 Q59GY3;V9HVZ0;A8K588;Q13247 Q59GY3 178 188 HEL-S-91;SRSF6 Serine/arginine-rich splicing factor 6 yes no 2;3 7.0103E-05 138.25 4 2 0.36789 0.50011 56.994 6 Median 0.39298 0.53686 19.214 4 0 Linear 0.93407 1.2479 4.102 2 0 Median 54648000 38882000 15766000 44378000 33831000 10547000 10270000 5051300 5219100 3175 615 3256 11504;11505;11506;11507;11508;11509 17423;17424;17425;17426;17427;17428;17429;17430 17426 8 ERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVK GTGTMDSQIKIWDLKERTNVANFPGHSGPI NGYYLATAADDSSVKLWDLRKLKNFKTLQL K E R V K L 5 1 3 2 0 0 2 3 1 2 1 1 0 2 2 5 3 0 2 2 0 0 37 1 3885.8446 Q9UMS4 Q9UMS4 381 417 PRPF19 Pre-mRNA-processing factor 19 yes yes 4 0.0081869 16.903 1 0.52602 0.6774 NaN 1 Median 0.52602 0.6774 NaN 1 0 Median NaN NaN NaN 0 0 Median 7434300 5199200 2235100 7434300 5199200 2235100 0 0 0 3176 1795 3257 11510 17431;17432 17432 2 ERVEAGDVIYIEANSGAVK KQLKLDPSIFESLQKERVEAGDVIYIEANS AGDVIYIEANSGAVKRQGRCDTYATEFDLE K E R V K R 3 1 1 1 0 0 3 2 0 2 0 1 0 0 0 1 0 0 1 3 0 0 19 1 2019.0273 B5BUB1;Q9Y265;E7ETR0;B3KRS7;H7C4I3 B5BUB1 183 201 RUVBL1 RuvB-like 1 yes no 3 1.2774E-06 80.238 4 1 0.55009 0.71854 11.394 3 Median 0.55009 0.71854 11.394 3 0 Median NaN NaN NaN 0 0 Median 111800000 82227000 29576000 92411000 62835000 29576000 19392000 19392000 0 3177 896 3258 11511;11512;11513;11514;11515 17433;17434;17435;17436;17437;17438 17437 6 ERVEAVNMAEGIIHDTETK VKNAEKYAEEDRRKKERVEAVNMAEGIIHD AVNMAEGIIHDTETKMEEFKDQLPADECNK K E R T K M 2 1 1 1 0 0 4 1 1 2 0 1 1 0 0 0 2 0 0 2 0 0 19 1 2141.0423 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z4T3;A1XP52 B7Z4V2 563 581 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 3 3.6788E-10 94.632 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61442000 0 61442000 0 0 0 61442000 0 61442000 3178 910 3259 11516;11517 17439;17440 17439 311 2 ERVEELEHR QSRFMELMQEKADLKERVEELEHRCIQLSG EKADLKERVEELEHRCIQLSGETDTIGEYI K E R H R C 0 2 0 0 0 0 4 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 9 1 1195.5945 Q08379;Q5HYE0;A0A087WYC0;Q5PXD5 Q08379 824 832 GOLGA2;DKFZp686K0319 Golgin subfamily A member 2 yes no 3 0.010437 44.425 1 0.27475 0.3458 NaN 1 Median 0.27475 0.3458 NaN 1 0 Median NaN NaN NaN 0 0 Median 2852800 2159400 693450 2852800 2159400 693450 0 0 0 3179 1449 3260 11518 17441 17441 1 ERVLAPILPDNFSTPTGSR PGPRDSPAFPDSPWRERVLAPILPDNFSTP APILPDNFSTPTGSRTDSQSVRHSPIAPSS R E R S R T 1 2 1 1 0 0 1 1 0 1 2 0 0 1 3 2 2 0 0 1 0 0 19 1 2069.0906 Q9NQS7;B3KPD3 Q9NQS7 279 297 INCENP Inner centromere protein yes no 3 8.8841E-05 82.449 2 1.0423 1.3518 NaN 1 Median 1.0423 1.3518 NaN 1 0 Median NaN NaN NaN 0 0 Median 10411000 3682100 6728800 10411000 3682100 6728800 0 0 0 3180 1752 3261 11519;11520 17442;17443 17443 2 ERVMEIVDADEK KAASITSEVFNKFFKERVMEIVDADEKVRH FFKERVMEIVDADEKVRHSKLAESVEKAIE K E R E K V 1 1 0 2 0 0 3 0 0 1 0 1 1 0 0 0 0 0 0 2 0 0 12 1 1432.6868 Q9Y5B9;Q0VGA3 Q9Y5B9 200 211 SUPT16H FACT complex subunit SPT16 yes no 2 0.0083607 77.597 2 2 0.87326 1.3373 25.045 4 Median 1.2932 1.7149 18.318 2 0 Median 0.67433 1.159 3.3764 2 0 Median 89303000 52681000 36622000 5882400 2240400 3641900 83421000 50440000 32980000 3181 1829 3262;3263 11521;11522;11523;11524 17444;17445;17446;17447 17446 853 3 ERYSYVCPDLVK GIPPEQSLETAKAVKERYSYVCPDLVKEFN AVKERYSYVCPDLVKEFNKYDTDGSKWIKQ K E R V K E 0 1 0 1 1 0 1 0 0 0 1 1 0 0 1 1 0 0 2 2 0 0 12 1 1527.7392 A0A024RAI1;P61158;B4DXW1;Q59FV6;B4DT29;B4DTI0 A0A024RAI1 229 240 ACTR3 Actin-related protein 3 yes no 2 0.0020976 72.006 1 0.73511 0.94584 NaN 1 Median 0.73511 0.94584 NaN 1 0 Median NaN NaN NaN 0 0 Median 4236300 2247900 1988300 4236300 2247900 1988300 0 0 0 3182 243 3264 11525 17448 17448 1 ESAAPAAAPTAEAPPPSVVTRPEPQALPSPAIR AATVASATGDSASERESAAPAAAPTAEAPP VTRPEPQALPSPAIRAPLPDLYPFGTMRGG R E S I R A 9 2 0 0 0 1 3 0 0 1 1 0 0 0 9 3 2 0 0 2 0 0 33 1 3245.7044 Q59F66;Q92841 Q59F66 38 70 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 3 2.3916E-06 64.502 3 2 1.6872 2.4924 91.904 4 Linear 0.42104 0.56664 30.017 2 0 Median 1.7891 2.6661 21.312 2 0 Median 47938000 21330000 26609000 16998000 10539000 6458800 30940000 10790000 20150000 3183 1554 3265 11526;11527;11528;11529;11530 17449;17450;17451;17452;17453;17454;17455;17456;17457;17458;17459 17450 11 ESADGLQGETQLLVSR YCRKSGLQTDYATEKESADGLQGETQLLVS SADGLQGETQLLVSRKSRPKSGGSGHAVAE K E S S R K 1 1 0 1 0 2 2 2 0 0 3 0 0 0 0 2 1 0 0 1 0 0 16 0 1701.8533 P46013 P46013 275 290 MKI67 Antigen KI-67 yes yes 2 8.2748E-60 220.37 4 2 1.0039 1.3743 15.37 6 Median 0.9681 1.3174 4.623 4 0 Median 1.0788 1.7663 0.093678 2 0 Median 404620000 202300000 202330000 185330000 96476000 88856000 219290000 105820000 113470000 3184 1342 3266 11531;11532;11533;11534;11535;11536 17460;17461;17462;17463;17464;17465;17466;17467;17468;17469 17460 10 ESADGLQGETQLLVSRK YCRKSGLQTDYATEKESADGLQGETQLLVS ADGLQGETQLLVSRKSRPKSGGSGHAVAEP K E S R K S 1 1 0 1 0 2 2 2 0 0 3 1 0 0 0 2 1 0 0 1 0 0 17 1 1829.9483 P46013 P46013 275 291 MKI67 Antigen KI-67 yes yes 3 4.9654E-05 53.565 2 0.86506 1.1474 0.0088306 2 Median 0.86506 1.1474 0.0088306 2 0 Median NaN NaN NaN 0 0 Median 9113700 4249100 4864600 9113700 4249100 4864600 0 0 0 3185 1342 3267 11537;11538 17470;17471 17471 2 ESALASADLEEEIHQK AKKKHTNAEKKLADRESALASADLEEEIHQ SALASADLEEEIHQKQGQKRKNSQPGVKVA R E S Q K Q 3 0 0 1 0 1 4 0 1 1 2 1 0 0 0 2 0 0 0 0 0 0 16 0 1768.8479 P42696;A2A2V2 P42696 123 138 RBM34 RNA-binding protein 34 yes no 2 2.3382E-18 160.86 4 2 0.94338 1.2215 17.581 6 Median 1.0652 1.35 17.874 4 0 Median 0.75114 1.1339 1.8201 2 0 Median 52519000 28838000 23681000 18390000 9935800 8454400 34128000 18902000 15226000 3186 1339 3268 11539;11540;11541;11542;11543;11544 17472;17473;17474;17475;17476;17477;17478;17479;17480;17481;17482 17474 11 ESAQAIEDLAGFK AASVTGSRRRPRAPRESAQAIEDLAGFKDP PRESAQAIEDLAGFKDPAAGHTEESMTDDK R E S F K D 3 0 0 1 0 1 2 1 0 1 1 1 0 1 0 1 0 0 0 0 0 0 13 0 1377.6776 P46013 P46013 2792 2804 MKI67 Antigen KI-67 yes yes 2 6.3069E-20 181.53 4 2 0.89878 1.134 21.925 6 Median 0.86019 1.085 6.3218 4 0 Median 1.0184 1.6293 4.2423 2 0 Median 236320000 120490000 115830000 117130000 60779000 56351000 119190000 59706000 59483000 3187 1342 3269 11545;11546;11547;11548;11549;11550 17483;17484;17485;17486;17487;17488;17489;17490;17491;17492 17484 10 ESAQAIEDLAGFKDPAAGHTEESMTDDK AASVTGSRRRPRAPRESAQAIEDLAGFKDP DPAAGHTEESMTDDKTTKIPCKSSPELEDT R E S D K T 5 0 0 4 0 1 4 2 1 1 1 2 1 1 1 2 2 0 0 0 0 0 28 1 2962.3138 P46013 P46013 2792 2819 MKI67 Antigen KI-67 yes yes 3;4 0.0043092 43.073 3 0.85561 1.0662 28.543 3 Median 0.85561 1.0662 28.543 3 0 Median NaN NaN NaN 0 0 Median 20541000 9878900 10662000 20541000 9878900 10662000 0 0 0 3188 1342 3270;3271 11551;11552;11553 17493;17494;17495;17496 17493 574 4 ESCDQILDSYK DIINKHYMEVNSNEKESCDQILDSYKVVKK SNEKESCDQILDSYKVVKKRKKESSCKAKN K E S Y K V 0 0 0 2 1 1 1 0 0 1 1 1 0 0 0 2 0 0 1 0 0 0 11 0 1356.5867 Q562F6;B7Z7S9 Q562F6 971 981 SGOL2 Shugoshin-like 2 yes no 2 0.00061454 78.556 2 0.94591 1.1946 NaN 1 Median 0.94591 1.1946 NaN 1 0 Median NaN NaN NaN 0 0 Median 18637000 11982000 6655100 18637000 11982000 6655100 0 0 0 3189 1546 3272 11554;11555 17497;17498 17498 2 ESCLEAYTGIVQGLK DKSDYDMVDYLNELRESCLEAYTGIVQGLK ESCLEAYTGIVQGLKGDQENVHPDVMLVQP R E S L K G 1 0 0 0 1 1 2 2 0 1 2 1 0 0 0 1 1 0 1 1 0 0 15 0 1666.8236 B2RBR9;Q14974;B7Z5M1;J3KTM9;B7Z752 B2RBR9 763 777 KPNB1 Importin subunit beta-1 yes no 2 0.005485 48.004 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1399500 1399500 0 1399500 1399500 0 0 0 0 3190 730 3273 11556 17499;17500 17500 2 ESDIYIVANEEGQQFALK RQVVESVGNQMGVGKESDIYIVANEEGQQF IYIVANEEGQQFALKLHRLGRTSFRNLKNK K E S L K L 2 0 1 1 0 2 3 1 0 2 1 1 0 1 0 1 0 0 1 1 0 0 18 0 2053.0004 Q9BVS4 Q9BVS4 106 123 RIOK2 Serine/threonine-protein kinase RIO2 yes yes 2 6.6842E-07 133.71 3 0.65524 0.82247 47.898 3 Median 0.65524 0.82247 47.898 3 0 Median NaN NaN NaN 0 0 Median 5515000 2809400 2705600 5515000 2809400 2705600 0 0 0 3191 1721 3274 11557;11558;11559 17501;17502;17503;17504;17505;17506;17507 17502 7 ESDVGFIPTSGLSGENLITR ITGKLGHFLKQAGFKESDVGFIPTSGLSGE FIPTSGLSGENLITRSQSSELTKWYKGLCL K E S T R S 0 1 1 1 0 0 2 3 0 2 2 0 0 1 1 3 2 0 0 1 0 0 20 0 2091.0484 H0YES5;B7Z1K2;B7Z524;H0YDX7;J3QT46;D9YZV0;B3KNB9;A8K9E1;Q9Y450 H0YES5 60 79 HBS1L HBS1-like protein yes no 2 3.7171E-05 108.58 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 721400 721400 0 721400 721400 0 0 0 0 3192 645 3275 11560 17508 17508 1 ESDVVQELLK MGLSQAPPVSWNGERESDVVQELLKYSSDK WNGERESDVVQELLKYSSDKAYGRKVLTWD R E S L K Y 0 0 0 1 0 1 2 0 0 0 2 1 0 0 0 1 0 0 0 2 0 0 10 0 1158.6132 A0A024R8V6;Q9P275;B3KMW2 A0A024R8V6 1022 1031 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 2 0.011245 88.177 2 0.98949 1.2686 NaN 1 Median 0.98949 1.2686 NaN 1 0 Median NaN NaN NaN 0 0 Median 3467600 955550 2512000 3467600 955550 2512000 0 0 0 3193 205 3276 11561;11562 17509;17510;17511 17509 3 ESEDFIVEQYK RYLLFARQFKPKISKESEDFIVEQYKHLRQ KISKESEDFIVEQYKHLRQRDGSGVTKSSW K E S Y K H 0 0 0 1 0 1 3 0 0 1 0 1 0 1 0 1 0 0 1 1 0 0 11 0 1385.6351 Q4ZG57;Q14566;B4DRF6 Q4ZG57 553 563 MCM6 DNA replication licensing factor MCM6 yes no 2 0.00033857 123.63 2 2 0.51986 0.68439 NaN 1 Median 0.51986 0.68439 NaN 1 0 Median NaN NaN NaN 0 0 Median 12439000 4894000 7545500 6283700 4894000 1389800 6155700 0 6155700 3194 1488 3277 11563;11564;11565;11566 17512;17513;17514;17515;17516 17513 5 ESEDKPEIEDVGSDEEEEK EEKEDKEEEKEKEEKESEDKPEIEDVGSDE KPEIEDVGSDEEEEKKDGDKKKKKKIKEKY K E S E K K 0 0 0 3 0 0 8 1 0 1 0 2 0 0 1 2 0 0 0 1 0 0 19 1 2191.9128 K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322 K9JA46 251 269 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 3 0.00012037 85.203 3 0.46503 0.57382 36.292 2 Median 0.46503 0.57382 36.292 2 0 Median NaN NaN NaN 0 0 Median 11793000 9668400 2125100 11793000 9668400 2125100 0 0 0 3195 1155 3278 11567;11568;11569 17517;17518;17519;17520;17521;17522 17520 6 ESEFDDEPK EEMDDQDKDKAKGRKESEFDDEPKFMSKVI KAKGRKESEFDDEPKFMSKVIGANKNQEEE K E S P K F 0 0 0 2 0 0 3 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 9 0 1094.4404 Q9Y2W1 Q9Y2W1 443 451 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2 0.022635 50.607 1 0.71718 0.92013 NaN 1 Median 0.71718 0.92013 NaN 1 0 Median NaN NaN NaN 0 0 Median 4438300 2668100 1770200 4438300 2668100 1770200 0 0 0 3196 1809 3279 11570 17523 17523 1 ESEGEEEDEDEDLSK KAVGPASILKEVEDKESEGEEEDEDEDLSK ESEGEEEDEDEDLSKYKLDEDEDEDDADLS K E S S K Y 0 0 0 3 0 0 7 1 0 0 1 1 0 0 0 2 0 0 0 0 0 0 15 0 1738.6541 O95218 O95218 152 166 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 yes yes 2 0.034147 28.206 1 0.67723 0.90154 NaN 1 Median NaN NaN NaN 0 0 Median 0.67723 0.90154 NaN 1 0 Median 2638500 1811500 826910 0 0 0 2638500 1811500 826910 3197 1214 3280 11571 17524 17524 1 ESEIIDFFLGASLK IKSLEEIYLFSLPIKESEIIDFFLGASLKD KESEIIDFFLGASLKDEVLKIMPVQKQTRA K E S L K D 1 0 0 1 0 0 2 1 0 2 2 1 0 2 0 2 0 0 0 0 0 0 14 0 1567.8134 P15880;Q8J014;Q8N5L9;Q6IPX5;Q3KQT6;E9PQD7;I3L404;E9PMM9;E9PPT0;Q8NI61;D3DU83;H3BNG3 P15880 90 103 RPS2;rps2;OK/KNS-cl.7 40S ribosomal protein S2 yes no 2 3.9709E-14 124.1 3 0.72914 0.95419 12.405 3 Plateau 0.72914 0.95419 12.405 3 0 Plateau NaN NaN NaN 0 0 Median 287710000 168100000 119610000 287710000 168100000 119610000 0 0 0 3198 1269 3281 11572;11573;11574 17525;17526;17527;17528 17528 3 ESEIIDFFLGASLKDEVLK IKSLEEIYLFSLPIKESEIIDFFLGASLKD IDFFLGASLKDEVLKIMPVQKQTRAGQRTR K E S L K I 1 0 0 2 0 0 3 1 0 2 3 2 0 2 0 2 0 0 0 1 0 0 19 1 2152.1304 P15880;Q8J014;Q8N5L9;Q6IPX5;Q3KQT6;E9PQD7;I3L404;E9PMM9;E9PPT0;Q8NI61;D3DU83 P15880 90 108 RPS2;rps2;OK/KNS-cl.7 40S ribosomal protein S2 yes no 2;3 3.2473E-16 140.89 5 0.67771 0.83285 14.097 3 Median 0.67771 0.83285 14.097 3 0 Median NaN NaN NaN 0 0 Median 159310000 105620000 53692000 159310000 105620000 53692000 0 0 0 3199 1269 3282 11575;11576;11577;11578;11579 17529;17530;17531;17532;17533;17534 17529 6 ESEITDEDIDGILER LQMIRHGATHVFASKESEITDEDIDGILER ESEITDEDIDGILERGAKKTAEMNEKLSKM K E S E R G 0 1 0 3 0 0 4 1 0 3 1 0 0 0 0 1 1 0 0 0 0 0 15 0 1732.8003 O60264;B7ZAX9;B4DZC0 O60264 666 680 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 1.9912E-33 197.07 3 3 2.0571 3.0047 8.542 6 Median 2.0884 2.8663 5.9145 3 0 Median 2.0086 3.3025 10.729 3 0 Median 368160000 120840000 247330000 220480000 70104000 150380000 147680000 50731000 96949000 3200 1189 3283 11580;11581;11582;11583;11584;11585 17535;17536;17537;17538;17539;17540;17541;17542;17543;17544 17535 10 ESELGDRPLQVGER GVGHRTVYLFDRREKESELGDRPLQVGERS KESELGDRPLQVGERSDYAGFRACVCQTLG K E S E R S 0 2 0 1 0 1 3 2 0 0 2 0 0 0 1 1 0 0 0 1 0 0 14 1 1583.7903 A6NHR9 A6NHR9 37 50 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3 0.00067358 63.76 4 1 0.69121 0.92754 34.325 5 Median 0.71773 0.96286 6.7533 4 0 Linear 1.3516 1.9257 NaN 1 0 Median 70979000 38277000 32702000 60607000 34343000 26264000 10372000 3934100 6438200 3201 568 3284 11586;11587;11588;11589;11590 17545;17546;17547;17548;17549;17550;17551 17548 7 ESESEDSSDDEPLIK ADSSTTKKNQNSSKKESESEDSSDDEPLIK ESESEDSSDDEPLIKKLKKPPTDEELKETI K E S I K K 0 0 0 3 0 0 4 0 0 1 1 1 0 0 1 4 0 0 0 0 0 0 15 0 1678.7057 B4DNW3;H0Y993;P35659;B4DFG0 P35659 300 314 DEK Protein DEK no no 2 5.3693E-11 151.79 3 0.72874 0.9275 NaN 1 Median 0.72874 0.9275 NaN 1 0 Median NaN NaN NaN 0 0 Median 7120200 6337600 782590 7120200 6337600 782590 0 0 0 3202 1322;843 3285 11591;11592;11593 17552;17553;17554;17555;17556;17557 17554 6 ESESEEAEAGAAELR EPSTLAAPTSAAEPRESESEEAEAGAAELR ESESEEAEAGAAELRAELALAAGRQEEKQV R E S L R A 4 1 0 0 0 0 6 1 0 0 1 0 0 0 0 2 0 0 0 0 0 0 15 0 1576.6853 Q8NAF0 Q8NAF0 193 207 ZNF579 Zinc finger protein 579 yes yes 2 0.0017939 43.501 1 0.77633 0.99823 NaN 1 Median NaN NaN NaN 0 0 Median 0.77633 0.99823 NaN 1 0 Median 3179000 1548300 1630700 0 0 0 3179000 1548300 1630700 3203 1646 3286 11594 17558 17558 1 ESFETFINK EVCFQKNERFVNLMKESFETFINKRPNKPA FVNLMKESFETFINKRPNKPAELIAKHVDS K E S N K R 0 0 1 0 0 0 2 0 0 1 0 1 0 2 0 1 1 0 0 0 0 0 9 0 1113.5342 Q13619;A0A0A0MR50;B2RBV7;B4DKT2 Q13619 392 400 CUL4A Cullin-4A yes no 2 0.0071013 69.825 2 1 0.53181 0.72527 25.878 2 Median 0.68816 0.8709 NaN 1 0 Median 0.41098 0.60399 NaN 1 0 Median 17416000 12495000 4921100 10331000 7844200 2487100 7084500 4650500 2434100 3204 1474 3287 11595;11596;11597 17559;17560;17561 17560 3 ESFLVTGSQDCTVK GHTHSVGTVCCSRLKESFLVTGSQDCTVKL KESFLVTGSQDCTVKLWPLPKALLSKNTAP K E S V K L 0 0 0 1 1 1 1 1 0 0 1 1 0 1 0 2 2 0 0 2 0 0 14 0 1569.7345 Q12788;J3KNP2;A0JLS5 Q12788 434 447 TBL3 Transducin beta-like protein 3 no no 2 1.0336E-49 224.58 4 1 0.84578 1.0372 18.316 5 Median 0.85198 1.0511 3.3887 4 0 Median 0.46987 0.70944 NaN 1 0 Median 150900000 82898000 68005000 135090000 72207000 62884000 15811000 10691000 5120400 3205 1456 3288 11598;11599;11600;11601;11602 17562;17563;17564;17565;17566;17567;17568;17569;17570;17571 17565 10 ESGAINTSLFVLGK SEDNRRTGNKGLRLKESGAINTSLFVLGKV KESGAINTSLFVLGKVVDALNQGLPRVPYR K E S G K V 1 0 1 0 0 0 1 2 0 1 2 1 0 1 0 2 1 0 0 1 0 0 14 0 1434.7718 Q14807;A0A024R632;B7Z9T5;H3BRB3 Q14807 293 306 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 6.746E-21 202.56 4 2 0.84298 1.0893 15.26 5 Median 0.97205 1.2085 5.3586 3 0 Plateau 0.57974 0.88268 0.097962 2 0 Median 112820000 69877000 42944000 67194000 41474000 25720000 45627000 28403000 17224000 3206 1497 3289 11603;11604;11605;11606;11607;11608 17572;17573;17574;17575;17576;17577;17578;17579;17580;17581 17574 10 ESGPSGIETELR GLVNNKYDTALNLLKESGPSGIETELRSLS LLKESGPSGIETELRSLSPDCGGSIEVMQS K E S L R S 0 1 0 0 0 0 3 2 0 1 1 0 0 0 1 2 1 0 0 0 0 0 12 0 1273.615 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 793 804 WDR36 WD repeat-containing protein 36 yes no 2 3.8648E-08 107.24 4 2 0.75415 1.094 6.4154 6 Median 0.77467 1.0494 4.3001 4 0 Median 0.73606 1.1809 1.4771 2 0 Median 230830000 125530000 105300000 143810000 77049000 66756000 87026000 48483000 38543000 3207 404 3290 11609;11610;11611;11612;11613;11614 17582;17583;17584;17585;17586;17587;17588;17589;17590;17591;17592;17593 17589 12 ESHTAVVYTEK AWDIPITYGVLPPPRESHTAVVYTEKDNKK PPPRESHTAVVYTEKDNKKSKLVIYGGMSG R E S E K D 1 0 0 0 0 0 2 0 1 0 0 1 0 0 0 1 2 0 1 2 0 0 11 0 1262.6143 A6NEM2;P51610;Q05C05 A6NEM2 201 211 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 5.7126E-09 162.64 2 2 0.87489 1.2218 12.784 4 Median 0.86285 1.1017 1.9589 2 0 Median 0.91744 1.3698 3.4841 2 0 Median 21403000 10940000 10463000 6566100 3566700 2999400 14837000 7373400 7463700 3208 564 3291 11615;11616;11617;11618 17594;17595;17596;17597;17598;17599;17600 17594 7 ESIGNVQVLLEYHIAYLK PREDGMVPFVFVGTKESIGNVQVLLEYHIA GNVQVLLEYHIAYLKEVEQLRMERLQIDEQ K E S L K E 1 0 1 0 0 1 2 1 1 2 3 1 0 0 0 1 0 0 2 2 0 0 18 0 2088.1255 A0A0F7KYT8;A0A0F7L0Q8;B4DXZ6;A0A0F7L1S3;P51114;B4DM78;E7EU85;B4DGH9;E9PFF5;B4DM21 A0A0F7KYT8 342 359 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 3 1.2364E-10 114.59 3 0.68291 0.87158 4.972 3 Plateau 0.68291 0.87158 4.972 3 0 Plateau NaN NaN NaN 0 0 Median 29577000 15835000 13742000 29577000 15835000 13742000 0 0 0 3209 438 3292 11619;11620;11621 17601;17602;17603;17604 17601 4 ESIGSELGNSFASNIR PETNFRDSSYPFANKESIGSELGNSFASNI SIGSELGNSFASNIRIKEEPLDDEYDKAMA K E S I R I 1 1 2 0 0 0 2 2 0 2 1 0 0 1 0 4 0 0 0 0 0 0 16 0 1679.8115 Q5VZL5 Q5VZL5 233 248 ZMYM4 Zinc finger MYM-type protein 4 yes yes 2 0.00048421 60.161 1 2 0.84968 1.2223 8.3686 2 Median NaN NaN NaN 0 0 Median 0.84968 1.2223 8.3686 2 0 Median 25357000 12867000 12489000 0 0 0 25357000 12867000 12489000 3210 1580 3293 11622;11623;11624 17605;17606;17607 17607 2 ESISENPTLDLPCSIGR TRKMIQKTAEPLLDKESISENPTLDLPCSI ISENPTLDLPCSIGRTEGTAHSSNTSDVDF K E S G R T 0 1 1 1 1 0 2 1 0 2 2 0 0 0 2 3 1 0 0 0 0 0 17 0 1886.9044 B4DZG1;Q9Y483;Q96G26 B4DZG1 323 339 MTF2 Metal-response element-binding transcription factor 2 yes no 2 1.1153E-05 102.73 2 1 0.64031 0.89195 17.555 3 Median 0.76492 1.038 21.518 2 0 Median 0.61727 0.89195 NaN 1 0 Median 26636000 15415000 11221000 14980000 8136400 6843300 11656000 7278300 4378100 3211 878 3294 11625;11626;11627 17608;17609;17610;17611 17608 4 ESIVDVEGVVR HASKQMVKFAANINKESIVDVEGVVRKVNQ NINKESIVDVEGVVRKVNQKIGSCTQQDVE K E S V R K 0 1 0 1 0 0 2 1 0 1 0 0 0 0 0 1 0 0 0 4 0 0 11 0 1200.635 D3DP78;A0A140VJW5;P14868;C9J7S3;C9JLC1;Q53R85;C9JQM9;H7C278 D3DP78 78 88 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.01597 86.624 1 0.49436 0.67636 NaN 1 Median 0.49436 0.67636 NaN 1 0 Median NaN NaN NaN 0 0 Median 3951700 2612000 1339600 3951700 2612000 1339600 0 0 0 3212 504 3295 11628 17612 17612 1 ESKEEETSIDVAGKPNEVTK YRLLAKEQKANEQKKESKEEETSIDVAGKP ETSIDVAGKPNEVTKAAESPDQKDTEGGPK K E S T K A 1 0 1 1 0 0 5 1 0 1 0 3 0 0 1 2 2 0 0 2 0 0 20 2 2189.0699 B4E106;B4DKS0;A0A024R0H1;P53985 B4E106 440 459 SLC16A1 Monocarboxylate transporter 1 yes no 3 0.0012383 89.507 2 0.80187 0.94272 NaN 1 Median 0.80187 0.94272 NaN 1 0 Median NaN NaN NaN 0 0 Median 4393500 2233100 2160300 4393500 2233100 2160300 0 0 0 3213 35 3296 11629;11630 17613;17614 17614 2 ESLEALLQR VWLRAAYFEKNHGTRESLEALLQRAVAHCP KNHGTRESLEALLQRAVAHCPKAEVLWLMG R E S Q R A 1 1 0 0 0 1 2 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 9 0 1057.5768 O94906 O94906 591 599 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.0057278 101.6 4 0.57611 0.79083 NaN 1 Median 0.57611 0.79083 NaN 1 0 Median NaN NaN NaN 0 0 Median 3163100 2502300 660740 3163100 2502300 660740 0 0 0 3214 1212 3297 11631;11632;11633;11634 17615;17616;17617;17618 17618 4 ESLNLEDQIESDESELK QDLSDNREKLASILKESLNLEDQIESDESE LNLEDQIESDESELKKLKTEENSFKRLMIV K E S L K K 0 0 1 2 0 1 5 0 0 1 3 1 0 0 0 3 0 0 0 0 0 0 17 0 1976.9062 Q9BZD4;A0A024R8Y0 Q9BZD4 316 332 NUF2;CDCA1 Kinetochore protein Nuf2 yes no 2 4.3437E-25 176.25 4 1 0.58048 0.8219 12.867 3 Median 0.63412 0.80291 18.096 2 0 Median 0.53079 0.8219 NaN 1 0 Median 34648000 22364000 12285000 10569000 5315200 5253700 24079000 17048000 7030800 3215 1727 3298 11635;11636;11637;11638;11639 17619;17620;17621;17622;17623;17624;17625 17620 7 ESLNLEDQIESDESELKK QDLSDNREKLASILKESLNLEDQIESDESE NLEDQIESDESELKKLKTEENSFKRLMIVK K E S K K L 0 0 1 2 0 1 5 0 0 1 3 2 0 0 0 3 0 0 0 0 0 0 18 1 2105.0012 Q9BZD4;A0A024R8Y0 Q9BZD4 316 333 NUF2;CDCA1 Kinetochore protein Nuf2 yes no 3 0.039148 15.422 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3240500 3240500 0 3240500 3240500 0 0 0 0 3216 1727 3299 11640 17626 17626 1 ESLPPAAEPSPVSK LTCLGVWLDKVADMKESLPPAAEPSPVSKE KESLPPAAEPSPVSKEQSKIGKKEPGDTVH K E S S K E 2 0 0 0 0 0 2 0 0 0 1 1 0 0 4 3 0 0 0 1 0 0 14 0 1407.7246 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 311 324 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 2 0.0022451 48.741 1 1.3967 1.7634 NaN 1 Median 1.3967 1.7634 NaN 1 0 Median NaN NaN NaN 0 0 Median 9740400 3367400 6373000 9740400 3367400 6373000 0 0 0 3217 478 3300 11641 17627;17628 17628 2 ESLQDTQPVGVLVDCCK DESLGPSDLELRELKESLQDTQPVGVLVDC LQDTQPVGVLVDCCKTLDQAKAVLKFIEGI K E S C K T 0 0 0 2 2 2 1 1 0 0 2 1 0 0 1 1 1 0 0 3 0 0 17 0 1946.9078 Q05CW7;E9PMU0;Q9H0A0;A0A087WV29 Q9H0A0 240 256 NAT10 N-acetyltransferase 10 no no 2 3.2768E-130 289.72 4 1 0.79688 0.98895 11.194 5 Median 0.82268 1.0143 8.3613 4 0 Median 0.5333 0.828 NaN 1 0 Median 171530000 97694000 73832000 139890000 78003000 61885000 31637000 19691000 11946000 3218 1730;1443 3301 11642;11643;11644;11645;11646 17629;17630;17631;17632;17633;17634;17635;17636;17637;17638;17639 17630 11 ESLTSFYQEEIQER ELLEEMYEEKLNILKESLTSFYQEEIQERD KESLTSFYQEEIQERDEKIEELEALLQEAR K E S E R D 0 1 0 0 0 2 4 0 0 1 1 0 0 1 0 2 1 0 1 0 0 0 14 0 1757.8108 O95235 O95235 631 644 KIF20A Kinesin-like protein KIF20A yes yes 2 9.6848E-10 128.36 5 2 0.71722 0.99064 19.359 4 Median 0.71722 0.99064 19.359 4 0 Median NaN NaN NaN 0 0 Median 36045000 13719000 22327000 26410000 13719000 12692000 9635100 0 9635100 3219 1215 3302 11647;11648;11649;11650;11651;11652;11653 17640;17641;17642;17643;17644;17645;17646;17647;17648;17649 17647 10 ESLTSFYQEEIQERDEK ELLEEMYEEKLNILKESLTSFYQEEIQERD LTSFYQEEIQERDEKIEELEALLQEARQQS K E S E K I 0 1 0 1 0 2 5 0 0 1 1 1 0 1 0 2 1 0 1 0 0 0 17 1 2129.9753 O95235 O95235 631 647 KIF20A Kinesin-like protein KIF20A yes yes 3 0.0089802 54.859 1 0.9204 1.2233 NaN 1 Median 0.9204 1.2233 NaN 1 0 Median NaN NaN NaN 0 0 Median 12662000 8905000 3757100 12662000 8905000 3757100 0 0 0 3220 1215 3303 11654 17650 17650 1 ESLTSFYQEEIQERDEKIEELEALLQEAR ELLEEMYEEKLNILKESLTSFYQEEIQERD DEKIEELEALLQEARQQSVAHQQSGSELAL K E S A R Q 2 2 0 1 0 3 9 0 0 2 4 1 0 1 0 2 1 0 1 0 0 0 29 2 3524.7159 O95235 O95235 631 659 KIF20A Kinesin-like protein KIF20A yes yes 4 0.031759 28.776 1 0.85232 1.0236 NaN 1 Median 0.85232 1.0236 NaN 1 0 Median NaN NaN NaN 0 0 Median 6993800 4112800 2881000 6993800 4112800 2881000 0 0 0 3221 1215 3304 11655 17651 17651 1 ESLTTDLQTR NKPGSVKPTQTIAVKESLTTDLQTRKEKDT TIAVKESLTTDLQTRKEKDTPNENRQKLRI K E S T R K 0 1 0 1 0 1 1 0 0 0 2 0 0 0 0 1 3 0 0 0 0 0 10 0 1162.583 J3QQW9;Q15022;A8K1U9 J3QQW9 381 390 SUZ12 Polycomb protein SUZ12 yes no 2 8.0172E-05 134.26 4 2 0.97096 1.4716 15.052 6 Linear 0.87442 1.1945 1.9715 4 0 Linear 0.99945 1.568 0.62906 2 0 Median 129690000 67870000 61819000 70583000 38166000 32417000 59105000 29704000 29402000 3222 1143 3305 11656;11657;11658;11659;11660;11661 17652;17653;17654;17655;17656;17657;17658;17659;17660;17661 17653 10 ESMAGNKPANAVLHK AEVECLAESHQHLSKESMAGNKPANAVLHK ESMAGNKPANAVLHKVLKQLEELLSDMKAD K E S H K V 3 0 2 0 0 0 1 1 1 0 1 2 1 0 1 1 0 0 0 1 0 0 15 1 1565.7984 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 1812 1826 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 0.00063846 44.968 1 0.96037 1.51 NaN 1 Median NaN NaN NaN 0 0 Median 0.96037 1.51 NaN 1 0 Median 12397000 6917600 5479500 0 0 0 12397000 6917600 5479500 3223 428 3306 11662 17662 17662 143 1 ESNTDQGFFK VVTDVTSNFLTVTIKESNTDQGFFKEKR__ TVTIKESNTDQGFFKEKR____________ K E S F K E 0 0 1 1 0 1 1 1 0 0 0 1 0 2 0 1 1 0 0 0 0 0 10 0 1171.5146 Q9HC52 Q9HC52 377 386 CBX8 Chromobox protein homolog 8 yes yes 2 0.00988 84.743 3 1 0.80886 1.0258 21.309 3 Median 0.84183 1.0651 5.3104 2 0 Median 0.51692 0.74064 NaN 1 0 Median 24015000 10510000 13506000 19178000 7610600 11568000 4837300 2899100 1938100 3224 1750 3307 11663;11664;11665;11666 17663;17664;17665;17666;17667 17663 5 ESPELLELIEDLK LAKVSVKEKLKMLRKESPELLELIEDLKVK RKESPELLELIEDLKVKLTEVKDELEPLLE K E S L K V 0 0 0 1 0 0 4 0 0 1 4 1 0 0 1 1 0 0 0 0 0 0 13 0 1526.808 Q9NQZ2 Q9NQZ2 222 234 UTP3 Something about silencing protein 10 yes yes 2 2.7661E-16 166.29 2 1.03 1.33 21.26 2 Median 1.03 1.33 21.26 2 0 Median NaN NaN NaN 0 0 Median 152850000 73240000 79612000 152850000 73240000 79612000 0 0 0 3225 1755 3308 11667;11668 17668;17669;17670;17671 17668 4 ESPGAAATSSSGPQAQQHR RCAPSAGSPAAAVGRESPGAAATSSSGPQA AAATSSSGPQAQQHRGGGPQAQSHGEARLS R E S H R G 4 1 0 0 0 3 1 2 1 0 0 0 0 0 2 4 1 0 0 0 0 0 19 0 1865.8616 Q7L2J0;A8K5Q1 Q7L2J0 68 86 MEPCE 7SK snRNA methylphosphate capping enzyme yes no 3 0.038425 16.615 1 1.5616 1.8795 NaN 1 Median NaN NaN NaN 0 0 Median 1.5616 1.8795 NaN 1 0 Median 628980 205620 423360 0 0 0 628980 205620 423360 3226 1611 3309 11669 17672 17672 1 ESQVNFQEGQLNSGK LEKTKQKISHELQVKESQVNFQEGQLNSGK ESQVNFQEGQLNSGKKQIEKLEQELKRCKS K E S G K K 0 0 2 0 0 3 2 2 0 0 1 1 0 1 0 2 0 0 0 1 0 0 15 0 1663.7802 P49454 P49454 94 108 CENPF Centromere protein F yes yes 2 9.455E-05 85.845 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3198200 3198200 0 3198200 3198200 0 0 0 0 3227 1351 3310 11670;11671;11672;11673 17673;17674;17675;17676 17673 4 ESQVNFQEGQLNSGKK LEKTKQKISHELQVKESQVNFQEGQLNSGK SQVNFQEGQLNSGKKQIEKLEQELKRCKSE K E S K K Q 0 0 2 0 0 3 2 2 0 0 1 2 0 1 0 2 0 0 0 1 0 0 16 1 1791.8751 P49454 P49454 94 109 CENPF Centromere protein F yes yes 3 0.046677 9.6577 1 1.0362 1.3199 NaN 1 Median 1.0362 1.3199 NaN 1 0 Median NaN NaN NaN 0 0 Median 6082600 2759300 3323400 6082600 2759300 3323400 0 0 0 3228 1351 3311 11674 17677 17677 1 ESQVSILQSLFGER ______________________________ RESQVSILQSLFGERHHFSFPSIFIYGHTA R E S E R H 0 1 0 0 0 2 2 1 0 1 2 0 0 1 0 3 0 0 0 1 0 0 14 0 1591.8206 Q9UDM8;A8K8C0;A4D0P7;O43913;Q53FC8;G3V0H0 Q9UDM8 12 25 ORC5L;ORC5 Origin recognition complex subunit 5 yes no 2 4.4852E-06 124.6 4 0.51247 0.69904 7.6678 4 Median 0.51247 0.69904 7.6678 4 0 Median NaN NaN NaN 0 0 Median 23426000 15077000 8348700 23426000 15077000 8348700 0 0 0 3229 543 3312 11675;11676;11677;11678 17678;17679;17680;17681;17682 17678 5 ESSETPDQFMTADETR GEASKSQEMVHLVNKESSETPDQFMTADET SSETPDQFMTADETRNLQNVDMKIGV____ K E S T R N 1 1 0 2 0 1 3 0 0 0 0 0 1 1 1 2 3 0 0 0 0 0 16 0 1842.7578 H0YE40;H0YD13;B4E2X0;H0Y2P0;B4DN59;A8K309;P16070 H0YE40 56 71 CD44 CD44 antigen yes no 2 0.00058685 44.406 1 2.63 3.6753 NaN 1 Median NaN NaN NaN 0 0 Median 2.63 3.6753 NaN 1 0 Median 5934800 1678400 4256300 0 0 0 5934800 1678400 4256300 3230 587 3313 11679 17683 17683 199 1 ESSLLVSELEDTTEK PVGRLALQRRTTRNKESSLLVSELEDTTEK ESSLLVSELEDTTEKTAETRLTLQRRAKTD K E S E K T 0 0 0 1 0 0 4 0 0 0 3 1 0 0 0 3 2 0 0 1 0 0 15 0 1678.8149 Q15058 Q15058 99 113 KIF14 Kinesin-like protein KIF14 yes yes 2 1.0642E-07 136.38 3 0.80778 1.0376 33.642 2 Median 0.80778 1.0376 33.642 2 0 Median NaN NaN NaN 0 0 Median 12672000 5693200 6979000 12672000 5693200 6979000 0 0 0 3231 1504 3314 11680;11681;11682 17684;17685;17686 17684 3 ESSLTEPVIVGLLK YHPQLAYCVVQFLEKESSLTEPVIVGLLKF KESSLTEPVIVGLLKFWPKTHSPKEVMFLN K E S L K F 0 0 0 0 0 0 2 1 0 1 3 1 0 0 1 2 1 0 0 2 0 0 14 0 1483.8498 B4DSD7;E9PFR3;A8K6Y2;A0A024RD11;Q14738 B4DSD7 311 324 PPP2R5D Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform yes no 2 0.00089622 93.258 4 0.53401 0.67633 15.059 2 Median 0.53401 0.67633 15.059 2 0 Median NaN NaN NaN 0 0 Median 7317500 5361200 1956300 7317500 5361200 1956300 0 0 0 3232 307 3315 11683;11684;11685;11686 17687;17688;17689;17690;17691 17690 5 ESSTFTDENPSETEESEAAGGIGKLEGEDGDVK ESGDTQELNVDPLLKESSTFTDENPSETEE AGGIGKLEGEDGDVKCLSEKDTYDTSIDSL K E S V K C 2 0 1 3 0 0 8 5 0 1 1 2 0 1 1 4 3 0 0 1 0 0 33 1 3413.4754 A0A1B0GUH9;A0A1P0AZG4;A0PJI9 A0A1B0GUH9 721 753 C10orf12 yes no 3 0.042302 11.234 1 0.89867 1.3795 NaN 1 Median NaN NaN NaN 0 0 Median 0.89867 1.3795 NaN 1 0 Median 6345100 3377300 2967800 0 0 0 6345100 3377300 2967800 3233 517 3316 11687 17692 17692 1 ESTGAQVQVAGDMLPNSTER GSLIGKGGCKIKEIRESTGAQVQVAGDMLP QVQVAGDMLPNSTERAITIAGIPQSIIECV R E S E R A 2 1 1 1 0 2 2 2 0 0 1 0 1 0 1 2 2 0 0 2 0 0 20 0 2088.9746 Q15366;B4DLC0;F8W0G4;F8VXH9;J3QT27;Q5MJP6;E9PFP8;P57721;H3BRU6;F8VZX2;B4DRD7;Q53SS8;Q15365 Q53SS8 125 144 PCBP2;PCBP3;PCBP1 Poly(rC)-binding protein 2;Poly(rC)-binding protein 3;Poly(rC)-binding protein 1 no no 2 2.0577E-35 182.37 4 1 1.6068 2.3892 146.09 2 Median 0.61638 0.85041 NaN 1 0 Median 4.1884 6.7121 NaN 1 0 Median 74246000 21584000 52662000 9736600 8944400 792220 64509000 12640000 51870000 3234 1510;1064;1509 3317;3318 11688;11689;11690;11691;11692 17693;17694;17695;17696;17697;17698;17699 17693 380 7 ESTGNMVTGQTVCK IFKGPAASTQEKNPRESTGNMVTGQTVCKN RESTGNMVTGQTVCKNKPNMSDPEESRGND R E S C K N 0 0 1 0 1 1 1 2 0 0 0 1 1 0 0 1 3 0 0 2 0 0 14 0 1510.6756 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 584 597 NCAPD2 Condensin complex subunit 1 yes no 2 0.013701 49.5 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3235 757 3319 11693 17700 17700 1 ESTLHLVLR QLEDGRTLSDYNIQKESTLHLVLRLRGGAK DYNIQKESTLHLVLRLRGGAKKRKKKSCTT K E S L R L 0 1 0 0 0 0 1 0 1 0 3 0 0 0 0 1 1 0 0 1 0 0 9 0 1066.6135 Q5RKT7;B2RDW1;P62979;Q8WYN9;J3QS39;J3QTR3;F5H6Q2;Q3MIH3;F5GYU3;F5H2Z3;F5H265;Q5UGI3;B4DV12;F5H388;F5H747;F5GXK7;J3QKN0;Q5U5U6;Q5PY61;Q96C32;Q96MH4;L8B4I8;L8B196;L8B4R0;A8K674;L8B4Z6;L8B4M0;L8B4J3;P62987;P0CG47;P0CG48;Q9UFQ0;Q96H31;Q66K58;Q59EM9;M0R1M6;M0R2S1 Q5RKT7 64 72 RPS27A;HEL112;UBB;UBC;UBA52;UbC;DKFZp434K0435 Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 2;3 1.2534E-51 227.71 7 5 0.7015 1.1903 8.72 12 Linear 0.71167 0.96828 4.545 7 0 Median 0.68672 1.1369 8.6138 5 0 Median 4012400000 2183900000 1828500000 519560000 290170000 229390000 3492800000 1893700000 1599100000 3236 742 3320 11694;11695;11696;11697;11698;11699;11700;11701;11702;11703;11704;11705 17701;17702;17703;17704;17705;17706;17707;17708;17709;17710;17711;17712;17713;17714;17715;17716;17717;17718;17719;17720;17721;17722;17723;17724;17725;17726;17727 17722 27 ESTQLSPADLTEGKPTDPSK NKRQPKLQGKSAETRESTQLSPADLTEGKP SPADLTEGKPTDPSKLESPSFTGTGDTEIA R E S S K L 1 0 0 2 0 1 2 1 0 0 2 2 0 0 3 3 3 0 0 0 0 0 20 1 2100.0223 Q08J23 Q08J23 451 470 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 3 0.014254 22.996 2 3.6439 5.7453 0.71866 2 Median NaN NaN NaN 0 0 Median 3.6439 5.7453 0.71866 2 0 Median 18794000 4388000 14406000 0 0 0 18794000 4388000 14406000 3237 1451 3321 11706;11707 17728;17729 17728 2 ESTYQGHHTPPVQK TNTLTMYQWWRDVTRESTYQGHHTPPVQKG RESTYQGHHTPPVQKGLRYGMILFITSEVF R E S Q K G 0 0 0 0 0 2 1 1 2 0 0 1 0 0 2 1 2 0 1 1 0 0 14 0 1607.7692 A0A075X871;A0A059QTG6;H9E795;A0A075X6R4;H9E7H3;H9E7J9;Q5Y0G2;Q5Y0J7;Q5Y0H4;Q5Y0F3;Q5Y0E5;Q5Y078;Q5Y070;Q5Y065;Q5Y011;Q5XZY3;Q5XZX9;Q5XZT6;Q5XZR9;Q5XZP7;Q5XZL8;Q5XZK9;Q5XZI9;Q5XZI8;Q5XZI3;Q5XZI2;Q5XZH6;B4YCG0;T1Q6R9;T1Q5Q2;T1Q5P3;T1Q5B9;S4T6M3;Q9B2X0;Q9B2W9;Q9B2U6;Q9B1S6;Q9B1S4;Q8WCY1;Q8HNQ7;Q85L10;Q85L04;Q85KZ1;Q85KW2;Q85KW0;Q7YEF1;Q7YCF3;Q7YCE5;Q7YCE0;Q7YCC7;Q7Y664;Q6WQG6;Q6WQA1;Q6RRW7;Q6RPE6;Q6RMU0;Q6RLY3;Q6R0W6;Q6R0Q1;Q5SB31;Q5SAG0;Q4F2U0;Q4F2A8;Q4F1I5;Q4F0T8;Q4F0P9;Q4EZD1;Q4EXJ4;Q4EWP5;Q305X3;Q305K6;Q305I0;Q27H55;Q15IP0;Q15II8;Q0Z7G1;Q0Z7D5;Q0G899;I6N522;F1AKZ3;F1AK70;E0Y4D8;D7P622;D7NV03;D3K5V4;D0V1V1;C7B3W9;C7B321;B7TMW4;B5M8C0;B4YBC2;B4F441;B3VEA5;B2Z642;B2Z5S5;B2XNX9;B2XNQ1;B2XMF0;B2XGB4;B2XFT2;B2XEN1;B2XEK5;B2WRF9;B1NVE6;A8JLT5;A6ZFQ8;A6ZDK7;A6ZC77;A6ZBW0;A6ZB50;A6Z9S0;A6Z9Q7;A6Z8Z7;A6Z8G5;A6Z809;A6Z708;A6Z460;A6Z2T0;A6YZY0;A6YX95;A6YWQ1;A6YW19;A1DV22;A1DUU4;A0SD91;A0A1S6M0V0;A0A0R4PYF0;A0A0R4PX57;A0A0N6YRH7;A0A0E3D7H3;X5CKC7;X5CAY7;X5CAG3;X5C9X5;X5C9F1;X5C127;X5BXV3;X2CLI8;W8DJM3;W8DE98;W8DDQ7;W0C1D3;V9N9G5;V9JJC5;V9JEP3;V9JBV1;V9J277;V5N323;V5LA48;V5JMB0;U5ZAB9;U5Z242;U5YV97;U3LQZ1;U3LB43;U3L8W6;U3L7D7;U3L3K7;S4WYR4;S4V7D6;S4UQJ2;R9YA13;R9Y6C9;R9Y4I8;R9Y2C7;R9XZ24;Q7GIM7;Q6VLN4;Q6VKA3;Q6VJ16;Q6VIM0;Q6VIH5;Q6VIB9;Q6VHA9;Q6VH99;Q5XSC1;Q4ZF68;Q4ZEF8;Q4ZED2;Q4ZEA6;Q4VFD0;Q4GV60;Q4GU59;Q4GSY0;Q4GPN6;Q4GPI4;Q4GMA4;Q4GIY4;Q4GIA0;Q4GI22;Q4GG20;Q4GFE9;Q4GC16;Q4GBF8;Q4G9U9;Q4G7C8;Q4G6V9;Q4G6P4;Q3S961;Q2HKT7;Q2HKI3;Q2HKH0;Q2HJS3;Q19MP4;Q15HG3;Q15H46;Q0ZFF5;Q0VXC5;N0BUK3;M1LF78;L7XY70;L7XNA1;L7XHF6;L7XE90;L7XE42;L7SJG0;L7SDS5;L0E7R8;K9R3V8;K9MXE4;K7X9W4;K7DVY4;K4GWK0;J7HNV9;J7H4R4;I6V941;I3Q9B3;I3Q7D7;I3Q632;I3Q1J6;I3PZU8;I3PX88;H9T5S2;H9T437;H9SVZ0;H9SN86;H9SMZ5;H9SHR2;H9SGP8;H9SGF7;H9SEK7;H9S0W7;H9RPS2;H9RMG7;H9RLV9;H9RAK7;H9R4P0;H9R484;H9QZW3;H9QYR0;H9QWF4;H9QVE0;H9QRZ4;H9QQ96;H9QP82;H9QNT9;H9QNC0;H9QIJ3;H9QDS9;H9Q8W3;H9Q589;H9Q2D8;H9PV14;H9PS37;H9PIE5;H9PG91;H9PBU4;H9P9C3;H9P818;H9P593;H9P2S2;H9NYP2;H9NYK3;H9NV96;H9NU95;H9NS67;H9NRT7;H9NQ52;H9MXE9;H9M5G1;H9E7U0;H9E7N8;H9E7L2;H9E7I6;H9E7G0;H9E782;H9A8A3;H6WIW4;H6WIB9;H6WGK8;G9LLZ5;G9LF53;G9LCP5;G8JEA2;G8JB19;G5D8N5;G5D8J6;G5D8E4;G5D8B8;G5D827;G5D7X5;G4W4F2;G4W2K2;G4VYZ1;G3EBM6;G3EBI7;G3EBC2;G3CA52;G3C9Y7;G1FK61;F8V9Z2;F6M8I7;F2WN35;F2WIP2;F2WID8;F2WHZ5;F2WHP1;F2WG19;F2WFE8;F2WEE7;F1KL87;F1KCG8;F1DLM3;F1CIL3;F1CI70;F1B6Q7;F1B675;E9LB22;E9LAC5;E7E4G9;E7E3Q9;E7CNJ7;E7CM99;E7CLZ5;E5LFL6;E5EY89;E5E1P4;E5E1I7;E5E1D5;E5E0U0;E5DYD2;E5DY67;E2J0C2;E2FQB7;E1B320;D6N765;D6N462;D6C3F2;D6BZS8;D4IH23;D1GI28;C9D5W0;C8YGY6;C8Y5S3;C8Y3W0;C8XZH6;C7SKT4;C7SJU6;C5MM24;C4RU97;C4PK82;B8XZS7;B8X4N0;B8RFL3;B4YGV7;B3DE35;B2ZNN0;B2YAW2;B2KLD8;B2CB92;B2CB40;B1W7S8;B1W6U0;B0Z7E9;B0Z745;B0Z6N9;B0EWB5;A8WFB7;A7XTZ1;A7LFE4;A7LDP6;A4ZMW5;A4ZMF9;A4ZLS9;A4ZLI8;A4ZLD6;A3RM82;A1DTV1;A1DTL0;A1DTJ7;A0A1S6P8I0;A0A1S6NF74;A0A1S6MWY7;A0A1S6M8U8;A0A1S6LZ79;A0A1J0QPU7;A0A1J0QF46;A0A1J0Q6T5;A0A1J0PT73;A0A1B1LLR5;A0A1B1CX69;A0A193DRQ4;A0A143FYM1;A0A141ZSN7;A0A141ZSL1;A0A140DGE8;A0A140DG57;A0A0Y0LWT9;A0A0S2IAR5;A0A0K1Z5H7;A0A0K1HQG2;A0A0G3FFE5;A0A0G2UR35;A0A0E3T332;A0A0E3T2A4;A0A0E3M2L1;A0A0E3JM36;A0A0C5B7S7;A0A097QDD8;A0A097Q7A4;A0A097Q5K4;A0A097Q1S3;A0A097Q0W3;A0A097PZZ2;A0A096YC77;A0A096X3H2;A0A096WXN1;A0A096WNK8;A0A096WNG4;A0A096WAQ9;A0A096W9H4;A0A088FT95;A0A075C7G6;A0A068C314;A0A068C1X3;A0A068BWL1;A0A068BSM3;A0A068BLJ0;A0A059SF52;A0A059S9H9;A0A059S1K3;A0A059RYZ4;A0A059RWN6;A0A059RWD2;A0A059RW26;A0A059RVV1;A0A059RV52;A0A059RV13;A0A059RUW7;A0A059RTY0;A0A059RTN7;A0A059RSR4;A0A059RSL9;A0A059RSE7;A0A059RSC2;A0A059RSC0;A0A059RS90;A0A059RS36;A0A059RRZ0;A0A059RR81;A0A059RR60;A0A059RQG8;A0A059RPC5;A0A059RP63;A0A059RNY9;A0A059RNV0;A0A059RNN3;A0A059RMZ2;A0A059RMR4;A0A059RME4;A0A059RLQ9;A0A059RLC3;A0A059RKX0;A0A059RK35;A0A059RK12;A0A059RJ07;A0A059RID7;A0A059RHW4;A0A059RHP6;A0A059RHB6;A0A059RGW3;A0A059RC73;A0A059R8Y9;A0A059R879;A0A059R5A7;A0A059R342;A0A059QTP8;A0A059QTI8;A0A059QT91;A0A059QSW1;A0A059QSS8;A0A059QSG6;A0A059QRQ4;A0A059QQR4;A0A059QQF2;A0A059QPY1;A0A059QP57;A0A059QP19;A0A059QP15;A0A059QNP6;A0A059QNN3;A0A059QMM8;A0A059QMC6;A0A059QLT7;A0A059QJU5;A0A059QJQ7;A0A059QJI7;A0A059QIM7;A0A059QGM3;A0A059QFL5;A0A059QF86;A0A059QDR4;A0A059QDQ3;A0A059QD68;A0A059QB52;A0A023R2W4;A0A023QW72;A0A023QSW5;A0A023QKT8;A0A023Q4K2;T2HQ00;T2HNX6;T2HLZ8;T2HLK2;T2HLG2;T2HKR7;T2HKR6;T2HKD7;E7AXU6;B9EF90;B9EEI0;B9EEE1;B9EE11;B9ECT2;I7H1S4;P00414 A0A075X871 64 77 COX3;COIII;CO3;cox3;coxIII;MT-CO3 Cytochrome c oxidase subunit 3 yes no 2;3 4.6868E-07 124.21 4 1 0.72296 0.92303 6.4235 5 Median 0.70598 0.88402 6.2314 4 0 Median 0.72296 0.95117 NaN 1 0 Median 24893000 14858000 10035000 22700000 13625000 9075800 2192600 1233200 959440 3238 0 3322 11708;11709;11710;11711;11712 17730;17731;17732;17733;17734;17735 17733 6 ESVDLPEEK LNLKEDHEVEVGVLKESVDLPEEKLPISDS EVGVLKESVDLPEEKLPISDSPPDTQEIHV K E S E K L 0 0 0 1 0 0 3 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 9 0 1044.4975 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1499 1507 AHCTF1 Protein ELYS yes no 2 0.0024316 82.75 2 0.83175 1.0362 5.5414 2 Median 0.83175 1.0362 5.5414 2 0 Median NaN NaN NaN 0 0 Median 37230000 20608000 16622000 37230000 20608000 16622000 0 0 0 3239 1670 3323 11713;11714 17736;17737 17737 2 ESVFTVEGGHR LKLLLGAGAVAYGVRESVFTVEGGHRAIFF YGVRESVFTVEGGHRAIFFNRIGGVQQDTI R E S H R A 0 1 0 0 0 0 2 2 1 0 0 0 0 1 0 1 1 0 0 2 0 0 11 0 1216.5836 J3KPX7;Q99623;F5GY37;B4DW05;F5GWA7;F5H3X6;F5H2D2;F5H0C5 J3KPX7 38 48 PHB2 Prohibitin-2 yes no 2 2.9546E-09 163.32 5 1 0.57332 0.79108 47.732 6 Median 0.56313 0.77139 6.184 5 0 Median 1.5175 2.4603 NaN 1 0 Median 453570000 277620000 175940000 411540000 259160000 152380000 42029000 18465000 23564000 3240 1133 3324 11715;11716;11717;11718;11719;11720 17738;17739;17740;17741;17742;17743;17744;17745;17746;17747;17748;17749;17750 17739 13 ESVLTATSILNNPIVK DHIKGKQAYKEQIKRESVLTATSILNNPIV SVLTATSILNNPIVKARYERFVKGENPFEI R E S V K A 1 0 2 0 0 0 1 0 0 2 2 1 0 0 1 2 2 0 0 2 0 0 16 0 1697.9564 Q5BKZ1;A0A0A0MRN4 Q5BKZ1 444 459 ZNF326 DBIRD complex subunit ZNF326 yes no 2 8.941E-62 231.92 4 1 0.41281 0.53037 50.461 5 Median 0.41094 0.52394 6.949 4 0 Median 1.0672 1.6221 NaN 1 0 Median 44050000 27155000 16894000 31671000 21353000 10318000 12378000 5802400 6575900 3241 1555 3325 11721;11722;11723;11724;11725 17751;17752;17753;17754;17755;17756;17757 17754 7 ESVLVEWR LAFSVTGTSLLSGGRESVLVEWRDATEKNK SLLSGGRESVLVEWRDATEKNKEFLPRLGA R E S W R D 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 1 0 1 0 2 0 0 8 0 1016.5291 A8K330;Q8IWA0 A8K330 269 276 WDR75 WD repeat-containing protein 75 yes no 2 0.049924 43.808 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3584400 3584400 0 0 0 0 3584400 3584400 0 3242 588 3326 11726 17758 17758 1 ESVQQAIASGITAQQIIHFLR MLYRFPNMVVAQVTRESVQQAIASGITAQQ IASGITAQQIIHFLRTRAHPVMLKQV____ R E S L R T 3 1 0 0 0 4 1 1 1 4 1 0 0 1 0 2 1 0 0 1 0 0 21 0 2309.2492 B4DNU0;Q53HH3;Q92759 B4DNU0 355 375 GTF2H4 General transcription factor IIH subunit 4 yes no 3 1.3897E-05 79.489 2 1.1451 1.6471 NaN 1 Median 1.1451 1.6471 NaN 1 0 Median NaN NaN NaN 0 0 Median 7218900 5893200 1325700 7218900 5893200 1325700 0 0 0 3243 841 3327 11727;11728 17759;17760;17761 17761 3 ESYDDVSSFR FGFGGKKKGSKWNTRESYDDVSSFRAKTAH KWNTRESYDDVSSFRAKTAHGRGLKRPGKK R E S F R A 0 1 0 2 0 0 1 0 0 0 0 0 0 1 0 3 0 0 1 1 0 0 10 0 1203.5044 Q6IB29;H7C2Q8;Q99848 Q6IB29 263 272 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 7.2745E-28 176.44 5 2 0.92026 1.2537 9.1662 5 Median 0.98921 1.3555 5.555 3 0 Median 0.70316 1.1508 3.628 2 0 Median 619740000 309930000 309810000 406140000 184760000 221380000 213600000 125170000 88429000 3244 1123 3328 11729;11730;11731;11732;11733;11734;11735 17762;17763;17764;17765;17766;17767;17768;17769;17770;17771;17772;17773;17774;17775;17776 17772 15 ESYSIYVYK KAQKKDGKKRKRSRKESYSIYVYKVLKQVH RKRSRKESYSIYVYKVLKQVHPDTGISSKA K E S Y K V 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 2 0 0 3 1 0 0 9 0 1150.5546 A0A024RCJ2;Q16778;P33778;P23527;P06899;Q8N257 A0A024RCJ2 36 44 HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB Histone H2B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B no no 1;2 0.00010396 160.88 12 5 0.78449 1.0358 14.159 9 Median 0.81822 1.0358 15.105 7 0 Median 0.72202 1.0411 15.008 2 0 Median 6052100000 5851800000 200310000 3451800000 3257700000 194080000 2600300000 2594100000 6222700 3245 295 3329 11736;11737;11738;11739;11740;11741;11742;11743;11744;11745;11746;11747;11748;11749;11750;11751;11752 17777;17778;17779;17780;17781;17782;17783;17784;17785;17786;17787;17788;17789;17790;17791;17792;17793;17794;17795;17796;17797;17798;17799;17800;17801 17777 25 ESYSIYVYKVLK KAQKKDGKKRKRSRKESYSIYVYKVLKQVH SRKESYSIYVYKVLKQVHPDTGISSKAMGI K E S L K Q 0 0 0 0 0 0 1 0 0 1 1 2 0 0 0 2 0 0 3 2 0 0 12 1 1490.8021 A0A024RCJ2;Q16778;P33778;P23527;P06899;Q8N257 A0A024RCJ2 36 47 HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB Histone H2B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B no no 2 0.023728 49.16 1 0.73498 1.1769 NaN 1 Median NaN NaN NaN 0 0 Median 0.73498 1.1769 NaN 1 0 Median 13053000 7644200 5409000 0 0 0 13053000 7644200 5409000 3246 295 3330 11753 17802 17802 1 ESYSVYVYK KAQKKDGKKRKRSRKESYSVYVYKVLKQVH RKRSRKESYSVYVYKVLKQVHPDTGISSKA K E S Y K V 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 3 2 0 0 9 0 1136.539 B2R4S9;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;B4DR52;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;O60814;Q0D2M2;A8K9J7;P57053 B2R4S9 36 44 HIST1H2BI;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;H2BFS Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type F-S yes no 1;2 7.6855E-11 152.63 31 6 0.69893 0.91022 52.765 19 Median 0.7063 0.90509 57.259 16 0 Median 0.6365 0.96227 0.56063 3 0 Median 21171000000 20332000000 839230000 15591000000 15065000000 526220000 5580300000 5267300000 313010000 3247 25 3331 11754;11755;11756;11757;11758;11759;11760;11761;11762;11763;11764;11765;11766;11767;11768;11769;11770;11771;11772;11773;11774;11775;11776;11777;11778;11779;11780;11781;11782;11783;11784;11785;11786;11787;11788;11789;11790 17803;17804;17805;17806;17807;17808;17809;17810;17811;17812;17813;17814;17815;17816;17817;17818;17819;17820;17821;17822;17823;17824;17825;17826;17827;17828;17829;17830;17831;17832;17833;17834;17835;17836;17837;17838;17839;17840;17841;17842;17843;17844;17845;17846;17847;17848;17849;17850;17851;17852;17853;17854;17855;17856;17857;17858;17859;17860;17861;17862;17863;17864;17865;17866 17838 64 ESYSVYVYKVLK KAQKKDGKKRKRSRKESYSVYVYKVLKQVH SRKESYSVYVYKVLKQVHPDTGISSKAMGI K E S L K Q 0 0 0 0 0 0 1 0 0 0 1 2 0 0 0 2 0 0 3 3 0 0 12 1 1476.7864 B2R4S9;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;B4DR52;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;O60814;Q0D2M2;A8K9J7;P57053 B2R4S9 36 47 HIST1H2BI;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;H2BFS Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type F-S yes no 2 2.0581E-28 167.67 2 0.67275 1.0828 6.6559 2 Median NaN NaN NaN 0 0 Median 0.67275 1.0828 6.6559 2 0 Median 87645000 52690000 34956000 0 0 0 87645000 52690000 34956000 3248 25 3332 11791;11792 17867;17868;17869 17869 3 ESYTEEIVSEAESHVSGISR PVSSVRKKPKVTPTKESYTEEIVSEAESHV EIVSEAESHVSGISRIVLPTEKTTGARRSK K E S S R I 1 1 0 0 0 0 5 1 1 2 0 0 0 0 0 5 1 0 1 2 0 0 20 0 2208.0182 Q5QJE6;J3KP30;B7Z854;E9PRB3 Q5QJE6 133 152 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2;3 3.3849E-84 244.23 8 4 0.88289 1.2115 6.2754 12 Median 0.91744 1.256 5.3906 8 0 Median 0.70949 1.1609 6.931 4 0 Median 977320000 537020000 440300000 353560000 180870000 172690000 623760000 356150000 267620000 3249 1561 3333 11793;11794;11795;11796;11797;11798;11799;11800;11801;11802;11803;11804 17870;17871;17872;17873;17874;17875;17876;17877;17878;17879;17880;17881;17882;17883;17884;17885;17886;17887;17888;17889 17871 20 ETAENYLGHTAK YSPSQIGAFVLMKMKETAENYLGHTAKNAV KMKETAENYLGHTAKNAVITVPAYFNDSQR K E T A K N 2 0 1 0 0 0 2 1 1 0 1 1 0 0 0 0 2 0 1 0 0 0 12 0 1332.631 B7Z4V2;V9HW84;P38646;B7Z1V7;B7Z4T3;Q2F839 B7Z4V2 162 173 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2;3 3.6367E-12 129.85 5 3 0.49786 0.64203 122.95 8 Median 0.45218 0.55494 16.189 5 0 Median 4.0313 6.0813 9.7959 3 0 Plateau 109340000 54781000 54556000 66716000 47061000 19655000 42621000 7720500 34901000 3250 910 3334 11805;11806;11807;11808;11809;11810;11811;11812 17890;17891;17892;17893;17894;17895;17896;17897;17898;17899;17900 17894 10 ETAHSVLGSDANDVVITVPFDFGEK VNPEDVARLIFSKMKETAHSVLGSDANDVV ANDVVITVPFDFGEKQKNALGEAARAAGFN K E T E K Q 2 0 1 3 0 0 2 2 1 1 1 1 0 2 1 2 2 0 0 4 0 0 25 0 2646.2813 Q0VDF9;B4DYI5 Q0VDF9 126 150 HSPA14 Heat shock 70 kDa protein 14 yes no 3 7.9207E-07 74.408 1 0.47138 0.60208 NaN 1 Median 0.47138 0.60208 NaN 1 0 Median NaN NaN NaN 0 0 Median 4157900 3050300 1107600 4157900 3050300 1107600 0 0 0 3251 1455 3335 11813 17901 17901 1 ETANAIVSQQTPQR ADQEIPETDWEVYLRETANAIVSQQTPQRL RETANAIVSQQTPQRLLEVRGRLYELLTHC R E T Q R L 2 1 1 0 0 3 1 0 0 1 0 0 0 0 1 1 2 0 0 1 0 0 14 0 1541.7798 B4DKE6;Q53HK8;A0A024RDQ8;P40938;A0A087X270 B4DKE6 257 270 RFC3 Replication factor C subunit 3 yes no 2 5.2984E-13 183.99 5 2 1.0442 1.5094 6.3142 2 Median NaN NaN NaN 0 0 Median 1.0442 1.5094 6.3142 2 0 Median 24573000 16442000 8131300 9280400 9280400 0 15293000 7161400 8131300 3252 321 3336 11814;11815;11816;11817;11818;11819;11820 17902;17903;17904;17905;17906;17907;17908;17909;17910;17911 17904 10 ETDAFVCRPNAALCR YPCVSSLEQLTELGRETDAFVCRPNAALCR ETDAFVCRPNAALCRVYYEADTT_______ R E T C R V 3 2 1 1 2 0 1 0 0 0 1 0 0 1 1 0 1 0 0 1 0 0 15 1 1778.8192 B2RMQ4;Q8WWK9 B2RMQ4 660 674 CKAP2 Cytoskeleton-associated protein 2 yes no 3 0.00011349 73.36 3 0.97362 1.2785 14.063 3 Median 0.97362 1.2785 14.063 3 0 Median NaN NaN NaN 0 0 Median 21703000 8979000 12724000 21703000 8979000 12724000 0 0 0 3253 745 3337 11821;11822;11823 17912;17913;17914;17915;17916 17916 5 ETDAHLANPVLPDEVLQEAVPGSIR YRRLVEGLREASAARETDAHLANPVLPDEV LPDEVLQEAVPGSIRTAEHFLGFLRRLLEY R E T I R T 3 1 1 2 0 1 3 1 1 1 3 0 0 0 3 1 1 0 0 3 0 0 25 0 2669.3661 A8MX75;P18074;E7EVE9;K7EKF3 A8MX75 276 300 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit yes no 3 3.2525E-09 91.378 4 1 0.51251 0.67214 8.0336 5 Median 0.51684 0.69671 7.4013 4 0 Median 0.44365 0.61962 NaN 1 0 Median 42490000 28503000 13986000 33793000 23133000 10660000 8696200 5369600 3326600 3254 660 3338 11824;11825;11826;11827;11828 17917;17918;17919;17920;17921;17922 17920 6 ETDDTLVLSFVGQTR PGIKGLWPLRSDPNRETDDTLVLSFVGQTR ETDDTLVLSFVGQTRVLMLNGEEVEETELM R E T T R V 0 1 0 2 0 1 1 1 0 0 2 0 0 1 0 1 3 0 0 2 0 0 15 0 1679.8366 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5;B7Z859 Q16531 420 434 DDB1 DNA damage-binding protein 1 yes no 2 0.0029413 42.031 2 0.68203 0.97344 3.1507 2 Median NaN NaN NaN 0 0 Median 0.68203 0.97344 3.1507 2 0 Median 18684000 10044000 8639900 0 0 0 18684000 10044000 8639900 3255 1520 3339 11829;11830 17923;17924 17924 2 ETDLLILFK ESAKKFVETPGQKYKETDLLILFKDDYFAK PGQKYKETDLLILFKDDYFAKKNEERKQNK K E T F K D 0 0 0 1 0 0 1 0 0 1 3 1 0 1 0 0 1 0 0 0 0 0 9 0 1090.6274 B5BUB5;P05455;Q14730;Q9UMH6 B5BUB5 177 185 SSB Lupus La protein yes no 2 0.0026313 107.01 4 0.33493 0.43448 25.172 3 Median 0.33493 0.43448 25.172 3 0 Median NaN NaN NaN 0 0 Median 8948300 7055600 1892700 8948300 7055600 1892700 0 0 0 3256 897 3340 11831;11832;11833;11834 17925;17926;17927;17928;17929 17926 5 ETDLQELFRPFGSISR DNATIRVTNLSEDTRETDLQELFRPFGSIS TDLQELFRPFGSISRIYLAKDKTTGQSKGF R E T S R I 0 2 0 1 0 1 2 1 0 1 2 0 0 2 1 2 1 0 0 0 0 0 16 1 1893.9585 Q6IAM0;O75821;K7EP16;A8K5K5;K7ENA8 Q6IAM0 252 267 EIF3G Eukaryotic translation initiation factor 3 subunit G yes no 3 0.021327 33.697 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2728200 0 2728200 0 0 0 2728200 0 2728200 3257 1209 3341 11835 17930 17930 1 ETEILFHSSLLR ELYKEPTNEELNRLRETEILFHSSLLRLQV RLRETEILFHSSLLRLQVEELLKEVRLSEK R E T L R L 0 1 0 0 0 0 2 0 1 1 3 0 0 1 0 2 1 0 0 0 0 0 12 0 1443.7722 Q9H6R4;A0A0A0MRW6;B4DF80 Q9H6R4 74 85 NOL6 Nucleolar protein 6 yes no 2 0.0066904 55.567 2 1 0.81611 1.1647 NaN 1 Median NaN NaN NaN 0 0 Median 0.81611 1.1647 NaN 1 0 Median 18271000 9142400 9129000 8809000 4073400 4735600 9462400 5069000 4393400 3258 1738 3342 11836;11837;11838 17931;17932;17933 17933 3 ETELELQMK CFGNWLATVEQRQEKETELELQMKLWMYNK EQRQEKETELELQMKLWMYNKKTQGFILNT K E T M K L 0 0 0 0 0 1 3 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 9 0 1119.5482 A8K330;Q8IWA0 A8K330 412 420 WDR75 WD repeat-containing protein 75 yes no 2 0.014745 47.599 2 0.4406 0.63053 4.5808 2 Median NaN NaN NaN 0 0 Median 0.4406 0.63053 4.5808 2 0 Median 11303000 7492300 3810200 0 0 0 11303000 7492300 3810200 3259 588 3343 11839;11840 17934;17935;17936 17936 200 3 ETEQLEIK EEIKALEDARINLLKETEQLEIKEVHIEKN ARINLLKETEQLEIKEVHIEKNDAETLQKC K E T I K E 0 0 0 0 0 1 3 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 0 988.50769 H0Y9Z8;Q9BPX3 Q9BPX3 538 545 NCAPG Condensin complex subunit 3 no no 2 0.004223 101.6 3 2 0.66718 0.8464 2.8954 5 Median 0.69527 0.8464 0.74787 3 0 Plateau 0.52245 0.83499 5.5273 2 0 Median 181000000 114670000 66331000 57953000 34336000 23617000 123050000 80336000 42714000 3260 1706;1096 3344 11841;11842;11843;11844;11845 17937;17938;17939;17940;17941;17942;17943;17944;17945;17946 17944 10 ETESQLLPDVGAIVTCK KSSENGALPVVSVVRETESQLLPDVGAIVT ESQLLPDVGAIVTCKVSSINSRFAKVHILY R E T C K V 1 0 0 1 1 1 2 1 0 1 2 1 0 0 1 1 2 0 0 2 0 0 17 0 1858.9346 R4GNH9;R4GMQ7;B1AMU7;B1AMU4;Q9Y3B2 R4GNH9 58 74 EXOSC1 Exosome complex component CSL4 yes no 2 0.0017899 99.161 2 0.70261 0.90543 NaN 1 Median 0.70261 0.90543 NaN 1 0 Median NaN NaN NaN 0 0 Median 9695100 7377100 2318000 9695100 7377100 2318000 0 0 0 3261 675 3345 11846;11847 17947;17948 17947 2 ETFSSAEGTVDK SQEGSSDDAERKQERETFSSAEGTVDKDTT QERETFSSAEGTVDKDTTIMELRDRLPKKQ R E T D K D 1 0 0 1 0 0 2 1 0 0 0 1 0 1 0 2 2 0 0 1 0 0 12 0 1269.5725 A4LAA3;P46100;A0A096LNL9;A0A096LNW1;B7Z1D8 A4LAA3 886 897 ATRX Transcriptional regulator ATRX yes no 2 0.00092999 96.171 5 2 0.79094 1.1908 37.328 4 Linear 0.48846 0.61604 14.093 2 0 Median 0.76869 1.156 4.5114 2 0 Median 62343000 37283000 25061000 25588000 16825000 8762700 36755000 20457000 16298000 3262 556 3346 11848;11849;11850;11851;11852;11853;11854 17949;17950;17951;17952;17953;17954;17955;17956;17957 17953 9 ETGEHLVHVK KRLRNGHVGISFVPKETGEHLVHVKKNGQH SFVPKETGEHLVHVKKNGQHVASSPIPVVI K E T V K K 0 0 0 0 0 0 2 1 2 0 1 1 0 0 0 0 1 0 0 2 0 0 10 0 1147.5986 P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5 P21333 2015 2024 FLNA;FLJ00119 Filamin-A yes no 2;3 6.7498E-22 180.45 4 0.90527 1.1514 6.845 4 Median 0.90527 1.1514 6.845 4 0 Median NaN NaN NaN 0 0 Median 91668000 45661000 46007000 91668000 45661000 46007000 0 0 0 3263 1287 3347 11855;11856;11857;11858 17958;17959;17960;17961;17962;17963 17963 6 ETGEVVDCHLSDMLQQLHSVNASKPSER PLPERPREKEEPVVRETGEVVDCHLSDMLQ LQQLHSVNASKPSERGLVRQEEAEDPACIP R E T E R G 1 1 1 2 1 2 3 1 2 0 3 1 1 0 1 4 1 0 0 3 0 0 28 1 3165.4819 B2R841;P53350;B4E083;Q59GD0;D3DWF3 B2R841 365 392 PLK1 Serine/threonine-protein kinase PLK;Serine/threonine-protein kinase PLK1 yes no 4 0.046194 11.385 1 0.74494 0.94222 NaN 1 Median 0.74494 0.94222 NaN 1 0 Median NaN NaN NaN 0 0 Median 5837000 3017400 2819600 5837000 3017400 2819600 0 0 0 3264 714 3348 11859 17964 17964 1 ETGGFSQEELLK AVKKLRQYISVKTQRETGGFSQEELLKIWK TQRETGGFSQEELLKIWKGLFYCMWVQDEP R E T L K I 0 0 0 0 0 1 3 2 0 0 2 1 0 1 0 1 1 0 0 0 0 0 12 0 1336.6511 Q14684;Q6PJM8 Q14684 42 53 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 2 7.6289E-08 150.1 3 1 0.76696 1.1654 10.147 3 Plateau 0.79956 1.0252 9.8213 2 0 Median 0.76696 1.1654 NaN 1 0 Median 30595000 21455000 9139800 19774000 14717000 5056900 10821000 6738600 4082900 3265 1493 3349 11860;11861;11862;11863 17965;17966;17967;17968;17969;17970;17971;17972 17968 8 ETGLSYTEDDK LQTLSPALKAPEKTRETGLSYTEDDKKASP EKTRETGLSYTEDDKKASPEHRIILRTRIA R E T D K K 0 0 0 2 0 0 2 1 0 0 1 1 0 0 0 1 2 0 1 0 0 0 11 0 1256.5408 B7Z8H0;Q96F82;A8K794;Q13415 B7Z8H0 298 308 ORC1L;ORC1 Origin recognition complex subunit 1 yes no 2 0.03276 39.039 1 0.28353 0.3829 NaN 1 Median NaN NaN NaN 0 0 Median 0.28353 0.3829 NaN 1 0 Median 1896800 1327000 569770 0 0 0 1896800 1327000 569770 3266 630 3350 11864 17973 17973 1 ETGSISAPSECFR SSVQRDDFHWEEYLKETGSISAPSECFRQS LKETGSISAPSECFRQSQIPPVNDFKVGMK K E T F R Q 1 1 0 0 1 0 2 1 0 1 0 0 0 1 1 3 1 0 0 0 0 0 13 0 1439.6351 Q9UQR0 Q9UQR0 41 53 SCML2 Sex comb on midleg-like protein 2 yes yes 2 0.0093681 41.283 1 0.5146 0.73115 NaN 1 Median 0.5146 0.73115 NaN 1 0 Median NaN NaN NaN 0 0 Median 5615300 3196600 2418700 5615300 3196600 2418700 0 0 0 3267 1799 3351 11865 17974 17974 1 ETGSTSIQAADSTAVNGSITPTDK ADPHFHHFLLSQTEKETGSTSIQAADSTAV ADSTAVNGSITPTDKKIGFLGLGLMGSGIV K E T D K K 3 0 1 2 0 1 1 2 0 2 0 1 0 0 1 4 5 0 0 1 0 0 24 0 2350.1136 K7EMM8;D3DUE6;K7EQB2 K7EMM8 216 239 GLYR1;N-PAC no no 2 0.045532 20.049 1 0.57074 0.8435 NaN 1 Median NaN NaN NaN 0 0 Median 0.57074 0.8435 NaN 1 0 Median 6378500 3827200 2551300 0 0 0 6378500 3827200 2551300 3268 982;1151 3352 11866 17975 17975 1 ETGSTSIQAADSTAVNGSITPTDKK ADPHFHHFLLSQTEKETGSTSIQAADSTAV DSTAVNGSITPTDKKIGFLGLGLMGSGIVS K E T K K I 3 0 1 2 0 1 1 2 0 2 0 2 0 0 1 4 5 0 0 1 0 0 25 1 2478.2086 K7EMM8;D3DUE6;K7EQB2 K7EMM8 216 240 GLYR1;N-PAC no no 3 9.638E-12 106.12 2 2 0.80675 1.0828 45.006 4 Median 0.90057 1.0828 22.78 2 0 Median 0.52688 0.79353 67.763 2 0 Median 17351000 9173100 8177800 7582300 3127600 4454700 9768600 6045500 3723100 3269 982;1151 3353 11867;11868;11869;11870 17976;17977;17978;17979;17980;17981 17976 6 ETGYVVERPSTTK RESDGFREEKNYKLKETGYVVERPSTTKDK LKETGYVVERPSTTKDKHKEEDKNSERITV K E T T K D 0 1 0 0 0 0 2 1 0 0 0 1 0 0 1 1 3 0 1 2 0 0 13 1 1465.7413 Q6DCA8;E9PK09;E9PQN2;E9PKI6;E9PK91;Q9NYF8 Q6DCA8 463 475 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2 2.1832E-77 262.07 4 2 0.56189 0.73493 28.318 6 Median 0.63605 0.65396 15.968 4 0 Linear 0.69006 1.0906 1.5828 2 0 Median 68888000 42353000 26535000 42565000 27001000 15564000 26323000 15352000 10971000 3270 1036 3354 11871;11872;11873;11874;11875;11876 17982;17983;17984;17985;17986;17987;17988;17989;17990;17991;17992 17983 11 ETHFPFAIR HVILSVLVSCCSSLKETHFPFAIRVFSLLQ CCSSLKETHFPFAIRVFSLLQKKIKKLESV K E T I R V 1 1 0 0 0 0 1 0 1 1 0 0 0 2 1 0 1 0 0 0 0 0 9 0 1116.5716 B2RWN5;Q9H583;Q5T3Q7;A2VDI1 B2RWN5 720 728 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2;3 0.0011346 88.948 5 0.86399 1.1846 5.6299 5 Median 0.86399 1.1846 5.6299 5 0 Median NaN NaN NaN 0 0 Median 49407000 26454000 22953000 49407000 26454000 22953000 0 0 0 3271 748 3355 11877;11878;11879;11880;11881 17993;17994;17995;17996;17997;17998;17999 17993 7 ETIDNNSVSSPLQSLQQR MQNWDAAMEDLTRLKETIDNNSVSSPLQSL DNNSVSSPLQSLQQRTWLIHWSLFVFFNHP K E T Q R T 0 1 2 1 0 3 1 0 0 1 2 0 0 0 1 4 1 0 0 1 0 0 18 0 2014.992 E5RHS5;E5RGA2;B3KW56;Q6IAX5;B2R806;P60228;H0YAW4 E5RHS5 67 84 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 2 4.0731E-35 186.51 4 0.38763 0.53729 NaN 1 Median 0.38763 0.53729 NaN 1 0 Median NaN NaN NaN 0 0 Median 12502000 10865000 1636900 12502000 10865000 1636900 0 0 0 3272 712 3356 11882;11883;11884;11885 18000;18001;18002;18003;18004 18002 5 ETIEILFSEGLIK RGIGIHHGGLLPILKETIEILFSEGLIKAL LKETIEILFSEGLIKALFATETFAMGINMP K E T I K A 0 0 0 0 0 0 3 1 0 3 2 1 0 1 0 1 1 0 0 0 0 0 13 0 1490.8232 P42285;A8K6I4;B4E3M6 P42285 465 477 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 3.0898E-08 147.74 4 0.73112 0.93599 5.5662 4 Median 0.73112 0.93599 5.5662 4 0 Median NaN NaN NaN 0 0 Median 23991000 13276000 10716000 23991000 13276000 10716000 0 0 0 3273 1336 3357 11886;11887;11888;11889 18005;18006;18007;18008;18009;18010;18011;18012;18013;18014;18015 18008 11 ETIPDIDPNAK DEEAESLKETFDPEKETIPDIDPNAKLLQP DPEKETIPDIDPNAKLLQPPAPIMPLDTNW K E T A K L 1 0 1 2 0 0 1 0 0 2 0 1 0 0 2 0 1 0 0 0 0 0 11 0 1211.6034 P53621 P53621 783 793 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.0038763 89.029 4 0.46642 0.58227 17.855 3 Median 0.46642 0.58227 17.855 3 0 Median NaN NaN NaN 0 0 Median 22542000 17705000 4836500 22542000 17705000 4836500 0 0 0 3274 1371 3358 11890;11891;11892;11893 18016;18017;18018;18019 18019 4 ETLDAGNYDSPLEFCK YRDIIDTPMDFGTVRETLDAGNYDSPLEFC TLDAGNYDSPLEFCKDIRLIFSNAKAYTPN R E T C K D 1 0 1 2 1 0 2 1 0 0 2 1 0 1 1 1 1 0 1 0 0 0 16 0 1857.8091 Q9NSI6;Q5R2U7;H7C409 Q9NSI6 1365 1380 BRWD1;WDR9 Bromodomain and WD repeat-containing protein 1 yes no 2 1.3949E-08 122.34 5 0.86296 1.0844 12.378 2 Median 0.86296 1.0844 12.378 2 0 Median NaN NaN NaN 0 0 Median 12184000 7139000 5044700 12184000 7139000 5044700 0 0 0 3275 1758 3359 11894;11895;11896;11897;11898 18020;18021;18022;18023;18024;18025 18021 6 ETLEAGNYESPMELCK YRDIIDTPMDFATVRETLEAGNYESPMELC TLEAGNYESPMELCKDVRLIFSNSKAYTPS R E T C K D 1 0 1 0 1 0 4 1 0 0 2 1 1 0 1 1 1 0 1 0 0 0 16 0 1869.8125 Q8WWQ0;Q9NWP3 Q8WWQ0 1368 1383 PHIP PH-interacting protein yes no 2 0.00018413 53.6 1 0.66571 0.98797 NaN 1 Median NaN NaN NaN 0 0 Median 0.66571 0.98797 NaN 1 0 Median 10885000 5742400 5142800 0 0 0 10885000 5742400 5142800 3276 1668 3360 11899 18026 18026 742 1 ETLEFADQENQVAHLELGQVECQLK QQQQAVLAKEVRDLKETLEFADQENQVAHL QVAHLELGQVECQLKTTLEVLRERSLQCEN K E T L K T 2 0 1 1 1 4 5 1 1 0 4 1 0 1 0 0 1 0 0 2 0 0 25 0 2927.3971 A8K8N3;Q96R06;K7ELC8;E9PMD0 A8K8N3 801 825 SPAG5 Sperm-associated antigen 5 yes no 3 9.3648E-05 61.537 2 0.08796 0.11367 NaN 1 Median 0.08796 0.11367 NaN 1 0 Median NaN NaN NaN 0 0 Median 7875800 7436900 438910 7875800 7436900 438910 0 0 0 3277 642 3361 11900;11901 18027;18028 18027 2 ETLESALIALDSEK GLGRPTPGLSQGPGKETLESALIALDSEKP KETLESALIALDSEKPKKLRFHPKQLYFSA K E T E K P 2 0 0 1 0 0 3 0 0 1 3 1 0 0 0 2 1 0 0 0 0 0 14 0 1517.7825 A0A1B0GV09;Q9H9B1;A0A1B0GU48 A0A1B0GV09 687 700 EHMT1 Histone-lysine N-methyltransferase EHMT1 no no 2 0.0096679 53.528 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3278 518 3362 11902 18029 18029 1 ETLGSEAVSSNVIDYGHASK MGRRLPNLPSQSRNKETLGSEAVSSNVIDY EAVSSNVIDYGHASKYGYTEDPLEVRIYDP K E T S K Y 2 0 1 1 0 0 2 2 1 1 1 1 0 0 0 4 1 0 1 2 0 0 20 0 2062.9807 Q14966;D6W5H1;A8K583;A0A096LPH6;B4DF54 Q14966 197 216 ZNF638 Zinc finger protein 638 yes no 3 0.0020531 54.857 1 2 0.635 0.87376 17.816 3 Median 0.58968 0.74016 NaN 1 0 Median 0.69311 0.9609 13.443 2 0 Median 15977000 10092000 5885100 6578300 4711500 1866800 9398500 5380200 4018400 3279 1498 3363 11903;11904;11905 18030;18031;18032;18033 18030 4 ETLGTGAFSEVVLAEEK WKKQAEDIKKIFEFKETLGTGAFSEVVLAE LGTGAFSEVVLAEEKATGKLFAVKCIPKKA K E T E K A 2 0 0 0 0 0 4 2 0 0 2 1 0 1 0 1 2 0 0 2 0 0 17 0 1778.8938 Q5SQQ7;Q8IU85 Q5SQQ7 27 43 CAMK1D Calcium/calmodulin-dependent protein kinase type 1D yes no 2 0.00092155 43.03 1 0.77578 0.99134 NaN 1 Median 0.77578 0.99134 NaN 1 0 Median NaN NaN NaN 0 0 Median 4248900 2292100 1956800 4248900 2292100 1956800 0 0 0 3280 1563 3364 11906 18034;18035 18035 2 ETLPDSGFSANIEDINEADLVRPLLPK KESSGGEKEVPPPPKETLPDSGFSANIEDI EDINEADLVRPLLPKDMERLTSLRAGIEGP K E T P K D 2 1 2 3 0 0 3 1 0 2 4 1 0 1 3 2 1 0 0 1 0 0 27 1 2952.508 P18583;H7C1M2 P18583 1714 1740 SON Protein SON yes no 3 0.0021706 45.913 2 1.0778 1.4634 27.926 2 Median 1.0778 1.4634 27.926 2 0 Median NaN NaN NaN 0 0 Median 6090800 3221800 2869000 6090800 3221800 2869000 0 0 0 3281 1282 3365 11907;11908 18036;18037;18038 18036 3 ETLQEGPKQEALQEDPLESFNYVLSK GMEKSFATKNEAVQKETLQEGPKQEALQED LQEDPLESFNYVLSKSTKADIGPNLDQLKD K E T S K S 1 0 1 1 0 3 5 1 0 0 4 2 0 1 2 2 1 0 1 1 0 0 26 1 2991.4713 B5MDQ0;Q2NKX8 B5MDQ0 723 748 ERCC6L DNA excision repair protein ERCC-6-like yes no 3 0.00049243 55.789 2 0.78843 0.95755 24.335 2 Median 0.78843 0.95755 24.335 2 0 Median NaN NaN NaN 0 0 Median 4817400 2524900 2292500 4817400 2524900 2292500 0 0 0 3282 902 3366 11909;11910 18039;18040;18041 18039 3 ETLQLESAAEVGFVR ______________________________ ETLQLESAAEVGFVRFFQGMPEKPTTTVRL K E T V R F 2 1 0 0 0 1 3 1 0 0 2 0 0 1 0 1 1 0 0 2 0 0 15 0 1647.8468 V9H019;Q53GS1;Q53FK0;E9PHA6;P43246;Q53RU4;V9H068;V9H0D5;V9H023;V9H0B2;Q0ZAJ2;V9H062;V9H015 V9H019 7 21 MSH2 DNA mismatch repair protein Msh2 yes no 2 0.00012085 64.64 2 0.41369 0.57391 12.763 2 Median 0.41369 0.57391 12.763 2 0 Median NaN NaN NaN 0 0 Median 8182200 6174300 2007900 8182200 6174300 2007900 0 0 0 3283 1029 3367 11911;11912 18042;18043 18043 2 ETNISYSQEADDR TPPSVVNEDFLHDLKETNISYSQEADDRVF LKETNISYSQEADDRVFRAHGHCLHEIFLL K E T D R V 1 1 1 2 0 1 2 0 0 1 0 0 0 0 0 2 1 0 1 0 0 0 13 0 1526.6485 B7ZAC5;Q53SG6;A0A1B0GWA2;B7Z3Q4;O00116 B7ZAC5 40 52 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes no 2 0.0042839 54.198 2 0.48631 0.64622 NaN 1 Median 0.48631 0.64622 NaN 1 0 Median NaN NaN NaN 0 0 Median 2312100 1549000 763120 2312100 1549000 763120 0 0 0 3284 522 3368 11913;11914 18044;18045 18044 2 ETNLCLSADVSLAR IHPVASKLLRLMQKKETNLCLSADVSLARE KETNLCLSADVSLARELLQLADALGPSICM K E T A R E 2 1 1 1 1 0 1 0 0 0 3 0 0 0 0 2 1 0 0 1 0 0 14 0 1547.7614 B5LY71;A8K5J1;P11172;E9PFD2;B5LY67;B5LY70;B5LY64 B5LY71 251 264 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase;Orotidine 5-phosphate decarboxylase yes no 2 0.014707 89.959 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3285 617 3369 11915 18046 18046 1 ETNLDSLPLVDTHSK RISLPLPNFSSLNLRETNLDSLPLVDTHSK ETNLDSLPLVDTHSKRTLLIKTVETRDGQV R E T S K R 0 0 1 2 0 0 1 0 1 0 3 1 0 0 1 2 2 0 0 1 0 0 15 0 1667.8366 V9HWE1;P08670;Q53HU8 V9HWE1 425 439 HEL113;VIM Vimentin yes no 2;3 1.1045E-28 199.8 7 4 0.74293 0.97222 32.384 11 Median 0.72738 0.95846 2.8746 7 0 Median 1.1283 1.7719 7.5697 4 0 Median 1225500000 673720000 551830000 1005400000 567140000 438250000 220150000 106580000 113580000 3286 1245 3370 11916;11917;11918;11919;11920;11921;11922;11923;11924;11925;11926 18047;18048;18049;18050;18051;18052;18053;18054;18055;18056;18057;18058;18059;18060;18061;18062;18063;18064;18065;18066;18067;18068 18053 22 ETPDKVELSK RQVTCVAWVRCGVAKETPDKVELSKEEVKR CGVAKETPDKVELSKEEVKRLIAEAKEKLQ K E T S K E 0 0 0 1 0 0 2 0 0 0 1 2 0 0 1 1 1 0 0 1 0 0 10 1 1144.5976 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DNL1;Q86X79;Q05BL3;Q6PKI5;Q6PIN4 Q9BV37 20 29 PWP1 Periodic tryptophan protein 1 homolog yes no 2 0.00048144 131.11 3 2 0.69643 0.95506 7.4133 5 Median 0.76751 0.953 6.4727 3 0 Median 0.63059 1.0061 6.148 2 0 Median 87799000 51697000 36102000 55116000 32120000 22995000 32684000 19577000 13107000 3287 273 3371 11927;11928;11929;11930;11931 18069;18070;18071;18072;18073;18074;18075;18076 18072 8 ETPHSPGVEDAPIAK NEEILERPAQLANARETPHSPGVEDAPIAK ETPHSPGVEDAPIAKVGVLAASMEAKASSQ R E T A K V 2 0 0 1 0 0 2 1 1 1 0 1 0 0 3 1 1 0 0 1 0 0 15 0 1546.7627 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2 F8VQE1 325 339 LIMA1 LIM domain and actin-binding protein 1 yes no 2;3 1.2118E-07 133.42 5 0.77232 0.96729 18.759 4 Median 0.77232 0.96729 18.759 4 0 Median NaN NaN NaN 0 0 Median 64473000 35456000 29017000 64473000 35456000 29017000 0 0 0 3288 834 3372 11932;11933;11934;11935;11936 18077;18078;18079;18080;18081;18082;18083 18078 7 ETPSSILLGSNQGSVSK KSKESGSTLDLSGSRETPSSILLGSNQGSV PSSILLGSNQGSVSKRCDKQPAYAPTTTDH R E T S K R 0 0 1 0 0 1 1 2 0 1 2 1 0 0 1 5 1 0 0 1 0 0 17 0 1702.8737 A0A087WYS3;H7C4X9;A0A087WVZ6 A0A087WYS3 1001 1017 ZMYND8 yes no 2 8.9725E-06 104.81 2 0.69617 0.9105 41.036 2 Median 0.69617 0.9105 41.036 2 0 Median NaN NaN NaN 0 0 Median 3849800 1952300 1897500 3849800 1952300 1897500 0 0 0 3289 365 3373 11937;11938 18084;18085;18086;18087;18088 18087 5 ETPYSEEDFQHLQK LRIPSNILLPEDKCKETPYSEEDFQHLQKE KETPYSEEDFQHLQKEIEQLQEKYKTELCT K E T Q K E 0 0 0 1 0 2 3 0 1 0 1 1 0 1 1 1 1 0 1 0 0 0 14 0 1749.7846 A8K1M4;Q9H081;I3L4K6 A8K1M4 106 119 MIS12 Protein MIS12 homolog yes no 3 0.0443 42.797 1 0.28813 0.3791 NaN 1 Median 0.28813 0.3791 NaN 1 0 Median NaN NaN NaN 0 0 Median 3060700 2322900 737790 3060700 2322900 737790 0 0 0 3290 579 3374 11939 18089 18089 1 ETQALILAPTR TFSISVLQCLDIQVRETQALILAPTRELAV IQVRETQALILAPTRELAVQIQKGLLALGD R E T T R E 2 1 0 0 0 1 1 0 0 1 2 0 0 0 1 0 2 0 0 0 0 0 11 0 1211.6874 A0A024R8W0;P38919 A0A024R8W0 106 116 DDX48;EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 1.0793E-05 89.171 4 0.45041 0.5912 NaN 1 Median 0.45041 0.5912 NaN 1 0 Median NaN NaN NaN 0 0 Median 7002200 4500300 2502000 7002200 4500300 2502000 0 0 0 3291 206 3375 11940;11941;11942;11943 18090;18091;18092;18093;18094 18092 5 ETQVILLDTPGIISPGK VHTTRCQALGVITEKETQVILLDTPGIISP QVILLDTPGIISPGKQKRHHLELSLLEDPW K E T G K Q 0 0 0 1 0 1 1 2 0 3 2 1 0 0 2 1 2 0 0 1 0 0 17 0 1779.9982 J3QSB2;J3QRV9;O75616 J3QSB2 160 176 ERAL1 GTPase Era, mitochondrial yes no 2 7.3767E-06 106.32 3 0.49707 0.64249 13.098 2 Median 0.49707 0.64249 13.098 2 0 Median NaN NaN NaN 0 0 Median 6385900 4228600 2157400 6385900 4228600 2157400 0 0 0 3292 1147 3376 11944;11945;11946 18095;18096;18097;18098 18095 3 ETSHASLPQPEPPGGGGSK DPAATQRPPSNGGAKETSHASLPQPEPPGG ASLPQPEPPGGGGSKGNKNGDNNSNHNGEG K E T S K G 1 0 0 0 0 1 2 4 1 0 1 1 0 0 4 3 1 0 0 0 0 0 19 0 1831.8701 W5ZR30;Q9UGU0 W5ZR30 646 664 TCF20 Transcription factor 20 yes no 3 0.0094434 25.198 1 0.80195 1.016 NaN 1 Median 0.80195 1.016 NaN 1 0 Median NaN NaN NaN 0 0 Median 6455200 3403000 3052200 6455200 3403000 3052200 0 0 0 3293 1783 3377 11947 18099;18100 18100 2 ETSSTGEEALVAAVR HYVGGPLDALIQGLKETSSTGEEALVAAVR ETSSTGEEALVAAVRCYDDLSRLLWGLEGL K E T V R C 3 1 0 0 0 0 3 1 0 0 1 0 0 0 0 2 2 0 0 2 0 0 15 0 1518.7526 Q9H6R4;A0A0A0MRW6;B4DF80;B3KPN5 Q9H6R4 650 664 NOL6 Nucleolar protein 6 yes no 2 2.3995E-10 126.66 4 0.87078 1.1809 6.7169 4 Median 0.87078 1.1809 6.7169 4 0 Median NaN NaN NaN 0 0 Median 110180000 61326000 48851000 110180000 61326000 48851000 0 0 0 3294 1738 3378 11948;11949;11950;11951 18101;18102;18103;18104;18105;18106;18107;18108 18106 8 ETSYGLSFFK GRAEKVTFQFSYGTKETSYGLSFFKPRPGN SYGTKETSYGLSFFKPRPGNFERNFSVNLY K E T F K P 0 0 0 0 0 0 1 1 0 0 1 1 0 2 0 2 1 0 1 0 0 0 10 0 1177.5655 Q9Y512 Q9Y512 169 178 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 2 0.0037642 101.9 3 0.45423 0.57194 2.1996 2 Median 0.45423 0.57194 2.1996 2 0 Median NaN NaN NaN 0 0 Median 19923000 15242000 4681000 19923000 15242000 4681000 0 0 0 3295 1827 3379 11952;11953;11954 18109;18110;18111;18112 18109 4 ETTDTDTADQVIASFK SGLVTFQAFIDFMSRETTDTDTADQVIASF TTDTDTADQVIASFKVLAGDKNFITAEELR R E T F K V 2 0 0 3 0 1 1 0 0 1 0 1 0 1 0 1 4 0 0 1 0 0 16 0 1740.8054 A0A0S2Z3G9;O43707;Q96BG6;F5GXS2;H7C144;A0A0S2Z3X3;A0A0S2Z3C0 A0A0S2Z3G9 838 853 ACTN4 Alpha-actinin-4 yes no 2 4.0862E-18 117.03 4 0.93898 1.2126 13.74 3 Median 0.93898 1.2126 13.74 3 0 Median NaN NaN NaN 0 0 Median 28945000 16510000 12436000 28945000 16510000 12436000 0 0 0 3296 451 3380 11955;11956;11957;11958 18113;18114;18115;18116;18117;18118;18119;18120;18121;18122 18119 10 ETTGPGTAGPQSNTTSSLK ASLLKNGEPEAELHKETTGPGTAGPQSNTT PGTAGPQSNTTSSLKGERKAIHTLQDVSTC K E T L K G 1 0 1 0 0 1 1 3 0 0 1 1 0 0 2 3 5 0 0 0 0 0 19 0 1832.8752 Q5VWN6;Q6IPC8 Q5VWN6 1706 1724 FAM208B;C10orf18 Protein FAM208B yes no 2 0.003189 40.801 2 0.85394 1.2184 0.97036 2 Median NaN NaN NaN 0 0 Median 0.85394 1.2184 0.97036 2 0 Median 11216000 5602100 5613700 0 0 0 11216000 5602100 5613700 3297 1579 3381 11959;11960 18123;18124;18125 18125 3 ETTLQAPQPPQAPQPLQPR HTIVGLGPNQVPEMKETTLQAPQPPQAPQP QAPQPPQAPQPLQPRKKRVRRTTQLRRTTG K E T P R K 2 1 0 0 0 5 1 0 0 0 2 0 0 0 6 0 2 0 0 0 0 0 19 0 2096.1015 F8W6A0;B7Z8M9;B7Z695 F8W6A0 276 294 PPHLN1 yes no 2 0.01139 73.927 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3298 913 3382 11961 18126 18126 1 ETTYYDVLGVKPNATQEELK ______________________________ DVLGVKPNATQEELKKAYRKLALKYHPDKN K E T L K K 1 0 1 1 0 1 3 1 0 0 2 2 0 0 1 0 3 0 2 2 0 0 20 1 2297.1427 P31689 P31689 4 23 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 3 2.2006E-09 113.14 4 0.4112 0.51024 10.579 3 Median 0.4112 0.51024 10.579 3 0 Median NaN NaN NaN 0 0 Median 50218000 37811000 12407000 50218000 37811000 12407000 0 0 0 3299 1309 3383 11962;11963;11964;11965 18127;18128;18129;18130;18131 18129 5 ETTYYDVLGVKPNATQEELKK ______________________________ VLGVKPNATQEELKKAYRKLALKYHPDKNP K E T K K A 1 0 1 1 0 1 3 1 0 0 2 3 0 0 1 0 3 0 2 2 0 0 21 2 2425.2377 P31689 P31689 4 24 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 3 5.0764E-06 96.561 3 1 0.4533 0.52275 54.735 4 Median 0.45581 0.51562 6.5205 3 0 Plateau 0.88384 1.4979 NaN 1 0 Median 47062000 28795000 18267000 38788000 24580000 14208000 8273700 4214600 4059100 3300 1309 3384 11966;11967;11968;11969 18132;18133;18134;18135;18136;18137;18138 18132 7 ETVDQVEELRR EEQQMHLNVGLRKIKETVDQVEELRRDLRI RKIKETVDQVEELRRDLRIKSQELEVKNAA K E T R R D 0 2 0 1 0 1 3 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 11 1 1372.6947 Q14204 Q14204 3210 3220 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 0.024563 30.331 1 0.51857 0.69571 NaN 1 Median 0.51857 0.69571 NaN 1 0 Median NaN NaN NaN 0 0 Median 18371000 11107000 7264500 18371000 11107000 7264500 0 0 0 3301 1483 3385 11970 18139;18140 18139 2 ETVEEQVSTTER KHKLFRIKINQIQMKETVEEQVSTTERVFQ QMKETVEEQVSTTERVFQDRQYQIDAAIVR K E T E R V 0 1 0 0 0 1 4 0 0 0 0 0 0 0 0 1 3 0 0 2 0 0 12 0 1406.6525 Q13619;A0A0A0MR50;B2RBV7;B4DKT2 Q13619 676 687 CUL4A Cullin-4A yes no 2 9.2395E-29 201.61 4 2 0.57504 0.76918 4.2042 6 Median 0.58058 0.78349 2.1273 4 0 Median 0.47836 0.73228 4.0828 2 0 Median 86158000 55261000 30897000 45973000 27973000 18000000 40185000 27288000 12897000 3302 1474 3386 11971;11972;11973;11974;11975;11976 18141;18142;18143;18144;18145;18146;18147;18148;18149;18150;18151;18152 18146 12 ETVNSPAIYK RKDLMDKTQKVKVKKETVNSPAIYKFQSRR VKVKKETVNSPAIYKFQSRRKR________ K E T Y K F 1 0 1 0 0 0 1 0 0 1 0 1 0 0 1 1 1 0 1 1 0 0 10 0 1120.5764 Q9Y3A2 Q9Y3A2 237 246 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 2 0.00013289 94.114 4 1 1.0173 1.3679 31.787 2 Median 1.4003 1.7127 NaN 1 0 Median 0.73907 1.0926 NaN 1 0 Median 56203000 16290000 39913000 50185000 12464000 37721000 6018000 3826100 2191900 3303 1814 3387 11977;11978;11979;11980;11981 18153;18154;18155;18156;18157;18158;18159 18159 7 ETVSEESNVLCLSK ACIPIKKSDPVVSYRETVSEESNVLCLSKS RETVSEESNVLCLSKSPNKHNRLYMKARPF R E T S K S 0 0 1 0 1 0 3 0 0 0 2 1 0 0 0 3 1 0 0 2 0 0 14 0 1593.7556 P13639;Q8TA90;B4DPU3;Q6W6M8 P13639 581 594 EEF2 Elongation factor 2 yes no 2 7.0309E-61 238.92 4 1 0.60823 0.74757 103.6 5 Median 0.58306 0.7227 5.6156 4 0 Median 4.8146 7.3246 NaN 1 0 Median 107380000 58471000 48907000 87770000 55119000 32651000 19608000 3352000 16256000 3304 1264 3388 11982;11983;11984;11985;11986 18160;18161;18162;18163;18164;18165;18166;18167 18161 8 ETVYCLNDDDETEVLK TVVDAKTLKKEDIQKETVYCLNDDDETEVL TVYCLNDDDETEVLKEDIIQGFRYGSDIVP K E T L K E 0 0 1 3 1 0 3 0 0 0 2 1 0 0 0 0 2 0 1 2 0 0 16 0 1941.8514 P13010;Q53T09 P13010 292 307 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 1.8651E-33 184.1 4 0.5804 0.71631 5.1119 4 Median 0.5804 0.71631 5.1119 4 0 Median NaN NaN NaN 0 0 Median 118980000 77267000 41717000 118980000 77267000 41717000 0 0 0 3305 1262 3389 11987;11988;11989;11990 18168;18169;18170;18171;18172;18173;18174 18170 7 ETVYCLNDDDETEVLKEDIIQGFR TVVDAKTLKKEDIQKETVYCLNDDDETEVL DETEVLKEDIIQGFRYGSDIVPFSKVDEEQ K E T F R Y 0 1 1 4 1 1 4 1 0 2 2 1 0 1 0 0 2 0 1 2 0 0 24 1 2900.3386 P13010;Q53T09 P13010 292 315 XRCC5 X-ray repair cross-complementing protein 5 yes no 3 9.1688E-82 207.56 3 2 0.52296 0.68329 24.773 5 Median 0.56404 0.74505 7.7373 3 0 Plateau 0.43907 0.75865 47.106 2 0 Median 376110000 250270000 125850000 253850000 162850000 91004000 122260000 87419000 34842000 3306 1262 3390 11991;11992;11993;11994;11995 18175;18176;18177;18178;18179;18180;18181;18182;18183 18175 9 ETYDSSSLPALLFK YQDYSDVQAQEPNVKETYDSSSLPALLFKA KETYDSSSLPALLFKARTLLGAESHLRNIN K E T F K A 1 0 0 1 0 0 1 0 0 0 3 1 0 1 1 3 1 0 1 0 0 0 14 0 1569.7926 A8K8D2;Q71F23 A8K8D2 380 393 CENPU Centromere protein U yes no 2 3.5543E-07 136.96 4 0.63919 0.79683 9.8346 3 Plateau 0.63919 0.79683 9.8346 3 0 Plateau NaN NaN NaN 0 0 Median 18275000 12068000 6206900 18275000 12068000 6206900 0 0 0 3307 639 3391 11996;11997;11998;11999 18184;18185;18186;18187 18184 3 ETYEALLAR LEKRRQLSRDIGRLKETYEALLARFPNLRF DIGRLKETYEALLARFPNLRFAYKDPEKNW K E T A R F 2 1 0 0 0 0 2 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 9 0 1064.5502 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 494 502 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 1;2 4.5792E-06 166.78 5 2 0.65646 0.9158 8.3873 6 Median 0.65886 0.91574 4.7266 5 0 Median 0.65408 1.0848 NaN 1 0 Median 584720000 319780000 264940000 425470000 251560000 173920000 159250000 68226000 91027000 3308 50 3392 12000;12001;12002;12003;12004;12005;12006 18188;18189;18190;18191;18192;18193;18194;18195;18196 18190 9 ETYVEQEQGENANDRNDR NQEKHFYTFTNEHHRETYVEQEQGENANDR VEQEQGENANDRNDRAIRVAAKWYNEHLKK R E T D R A 1 2 3 2 0 2 4 1 0 0 0 0 0 0 0 0 1 0 1 1 0 0 18 1 2165.921 F2Z2C0;A8QI98;Q9Y2L1 F2Z2C0 130 147 DIS3 Exosome complex exonuclease RRP44 yes no 3 0.00024529 42.813 2 1.3001 1.696 3.596 2 Median NaN NaN NaN 0 0 Median 1.3001 1.696 3.596 2 0 Median 3120700 1318300 1802400 0 0 0 3120700 1318300 1802400 3309 662 3393 12007;12008 18197;18198 18197 2 ETYYLSDSPLLGPPVGEPR EKEKEMKKSPTSLKRETYYLSDSPLLGPPV LSDSPLLGPPVGEPRLLASSPALPSSGAQA R E T P R L 0 1 0 1 0 0 2 2 0 0 3 0 0 0 4 2 1 0 2 1 0 0 19 0 2089.0368 B4DZT6;Q9NYZ3;A0A024R4V8 B4DZT6 124 142 GTSE1 G2 and S phase-expressed protein 1 yes no 2 0.0061513 81.632 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1270600 1270600 0 1270600 1270600 0 0 0 0 3310 881 3394 12009;12010 18199;18200 18200 2 EVAALCR SSTLFSALLIKCLEKEVAALCRYTPRRNIP LLIKCLEKEVAALCRYTPRRNIPPYFVALV K E V C R Y 2 1 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 7 0 817.41162 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356 A0A024R1N4 393 399 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.035702 57.463 1 0.48516 0.65011 NaN 1 Median 0.48516 0.65011 NaN 1 0 Median NaN NaN NaN 0 0 Median 18604000 13134000 5470300 18604000 13134000 5470300 0 0 0 3311 62 3395 12011 18201 18201 1 EVAFFNNFLTDAK HIFNKHAEKIEEVKKEVAFFNNFLTDAKRP KKEVAFFNNFLTDAKRPALPEIKPAQPPGP K E V A K R 2 0 2 1 0 0 1 0 0 0 1 1 0 3 0 0 1 0 0 1 0 0 13 0 1514.7405 Q9BXP5;H7C3A1;Q7Z4Y3;A0A0A0MSP6 Q9BXP5 746 758 SRRT Serrate RNA effector molecule homolog yes no 2 0.00012936 89.403 2 0.56045 0.71996 NaN 1 Median 0.56045 0.71996 NaN 1 0 Median NaN NaN NaN 0 0 Median 6084800 3546600 2538200 6084800 3546600 2538200 0 0 0 3312 1722 3396 12012;12013 18202;18203 18203 2 EVASNSELVQSSR DAETWFLSKTEELNKEVASNSELVQSSRSE NKEVASNSELVQSSRSEVTELRRVLQGLEI K E V S R S 1 1 1 0 0 1 2 0 0 0 1 0 0 0 0 4 0 0 0 2 0 0 13 0 1404.6845 CON__P08779;P08779;Q16195;K7ENW6 CON__P08779 318 330 KRT16;keratin Keratin, type I cytoskeletal 16 yes no 2 2.0612E-07 147.74 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18726000 18726000 0 13255000 13255000 0 5471800 5471800 0 + 3313 958 3397 12014;12015;12016;12017 18204;18205;18206;18207;18208 18205 5 EVATNSELVQSGK DAEEWFFTKTEELNREVATNSELVQSGKSE NREVATNSELVQSGKSEISELRRTMQNLEI R E V G K S 1 0 1 0 0 1 2 1 0 0 1 1 0 0 0 2 1 0 0 2 0 0 13 0 1360.6834 CON__P02533;P02533;A0A024R1X6;K7ESE1;CON__Q04695;Q04695;F5GWP8;CON__Q9QWL7;Q14666 CON__P02533 316 328 KRT14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 2 8.3169E-13 157.38 3 2 0.074317 0.11951 38.057 3 Median 0.17396 0.2243 NaN 1 0 Median 0.073788 0.11623 3.929 2 0 Median 85086000 79151000 5934700 22452000 21439000 1013100 62634000 57712000 4921600 + 3314 949;965 3398 12018;12019;12020;12021;12022 18209;18210;18211;18212;18213;18214;18215 18212 7 EVAYLGNEVSDEECLK AVVDEWRKEMGLCWKEVAYLGNEVSDEECL VAYLGNEVSDEECLKRVGLSGAPADACSTA K E V L K R 1 0 1 1 1 0 4 1 0 0 2 1 0 0 0 1 0 0 1 2 0 0 16 0 1853.8353 Q53GF0;Q8NFW8 Q53GF0 367 382 CMAS N-acylneuraminate cytidylyltransferase yes no 2 2.113E-22 165.58 5 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4397100 0 4397100 4397100 0 4397100 0 0 0 3315 1542 3399 12023;12024;12025;12026;12027 18216;18217;18218;18219;18220 18216 5 EVCEQNQQLLR LSTLKCQDEELEKMREVCEQNQQLLRENEI EKMREVCEQNQQLLRENEIIKQKLTLLQVA R E V L R E 0 1 1 0 1 3 2 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1415.6827 Q59HG1;O95239;B3KNC0 Q59HG1 978 988 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 8.1472E-10 155.07 3 0.85238 1.1557 7.1752 2 Median 0.85238 1.1557 7.1752 2 0 Median NaN NaN NaN 0 0 Median 28378000 13347000 15030000 28378000 13347000 15030000 0 0 0 3316 1216 3400 12028;12029;12030 18221;18222;18223;18224;18225 18221 5 EVCGFAPYER GRLTKHTKFVRDMIREVCGFAPYERRAMEL RDMIREVCGFAPYERRAMELLKVSKDKRAL R E V E R R 1 1 0 0 1 0 2 1 0 0 0 0 0 1 1 0 0 0 1 1 0 0 10 0 1226.539 Q9Y3U8;J3QSB5 Q9Y3U8 46 55 RPL36 60S ribosomal protein L36 yes no 2 0.00011074 123.35 4 2 0.70077 0.96969 16.547 6 Median 0.70911 0.97749 2.0827 4 0 Median 0.45772 0.71645 5.2925 2 0 Median 1307700000 754580000 553150000 1252100000 717170000 534900000 55659000 37414000 18245000 3317 1821 3401 12031;12032;12033;12034;12035;12036 18226;18227;18228;18229;18230;18231;18232;18233;18234;18235;18236;18237;18238 18234 13 EVDADGDLIAVSNLNDSDK ______________________________ DGDLIAVSNLNDSDKLQLLSLVTKKKRFWC R E V D K L 2 0 2 5 0 0 1 1 0 1 2 1 0 0 0 2 0 0 0 2 0 0 19 0 1988.9175 A8K410;A0A024RA58;O60443;A4FTY0 A8K410 12 30 DFNA5 Non-syndromic hearing impairment protein 5 yes no 2 0.0017253 128.76 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3318 237 3402 12037 18239 18239 1 EVDATSPAPSTSSTVK KLKVKGPALSRKRKKEVDATSPAPSTSSTV VDATSPAPSTSSTVKTEGAEATPGAQKRKK K E V V K T 2 0 0 1 0 0 1 0 0 0 0 1 0 0 2 4 3 0 0 2 0 0 16 0 1575.7628 D3DUZ3;Q16666;H3BM18;X6RHM1 D3DUZ3 105 120 IFI16 Gamma-interferon-inducible protein 16 yes no 2 0.00066765 49.423 1 1.8197 2.6072 NaN 1 Median NaN NaN NaN 0 0 Median 1.8197 2.6072 NaN 1 0 Median 6354200 2094900 4259300 0 0 0 6354200 2094900 4259300 3319 984 3403 12038 18240;18241 18241 2 EVDDLGPEVGDIK TGQEEIDEACKRIKREVDDLGPEVGDIKII KREVDDLGPEVGDIKIIPLYSTLPPQQQQR R E V I K I 0 0 0 3 0 0 2 2 0 1 1 1 0 0 1 0 0 0 0 2 0 0 13 0 1384.6722 O43143;B4E0S6 O43143 372 384 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 1.8913E-10 133.81 4 2 0.66024 0.82997 23.218 6 Median 0.6313 0.78241 5.9253 4 0 Median 0.78282 1.2272 2.4866 2 0 Median 115080000 68259000 46816000 56358000 35163000 21195000 58717000 33096000 25621000 3320 1180 3404 12039;12040;12041;12042;12043;12044 18242;18243;18244;18245;18246;18247;18248;18249;18250;18251;18252 18247 11 EVDDLTAELK DSVLRTEKEIKDTEKEVDDLTAELKSLEDK KDTEKEVDDLTAELKSLEDKAAEVVKNTNA K E V L K S 1 0 0 2 0 0 2 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1131.5659 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 954 963 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 3.8877E-10 172.94 4 3 0.67555 0.9411 8.6983 6 Median 0.69403 0.90777 4.9346 4 0 Median 0.65812 1.0529 1.9883 2 0 Median 573800000 338430000 235370000 437110000 264410000 172700000 136690000 74019000 62667000 3321 1760 3405 12045;12046;12047;12048;12049;12050;12051 18253;18254;18255;18256;18257;18258;18259;18260;18261;18262;18263;18264;18265;18266 18253 14 EVDEDSEPEREVR APASVVPFVRVKREREVDEDSEPEREVRAK EREVDEDSEPEREVRAKNGRVDSEDRRSRH R E V V R A 0 2 0 2 0 0 5 0 0 0 0 0 0 0 1 1 0 0 0 2 0 0 13 1 1587.7013 B9A018;Q53GS9;F8WC91 B9A018 77 89 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 3 0.048598 21.55 1 0.77594 1.0213 NaN 1 Median NaN NaN NaN 0 0 Median 0.77594 1.0213 NaN 1 0 Median 2336000 1178000 1158000 0 0 0 2336000 1178000 1158000 3322 926 3406 12052 18267 18267 1 EVDEDTTVTIPSAVYVAQLYHQVSK EELKEIEADLERQEKEVDEDTTVTIPSAVY PSAVYVAQLYHQVSKIEWDYECEPGMVKGI K E V S K I 2 0 0 2 0 2 2 0 1 1 1 1 0 0 1 2 3 0 2 5 0 0 25 0 2791.3916 B4E086;K7EJH0;K7EMX1;Q8NBT2 B4E086 67 91 SPC24 Kinetochore protein Spc24 yes no 3 2.4549E-07 83.31 4 0.59573 0.75612 9.9544 2 Median 0.59573 0.75612 9.9544 2 0 Median NaN NaN NaN 0 0 Median 31358000 24705000 6652600 31358000 24705000 6652600 0 0 0 3323 884 3407 12053;12054;12055;12056 18268;18269;18270;18271;18272 18269 5 EVDEGPSPPEQFTAVK HALDNGLFTLGAPHKEVDEGPSPPEQFTAV VDEGPSPPEQFTAVKLSDSRIALKSGYGKY K E V V K L 1 0 0 1 0 1 3 1 0 0 0 1 0 1 3 1 1 0 0 2 0 0 16 0 1728.8206 E9PRR7;Q14331 E9PRR7 23 38 FRG1 Protein FRG1 yes no 2 0.0016689 109.15 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 792310 792310 0 792310 792310 0 0 0 0 3324 1046 3408 12057 18273 18273 1 EVDEQMLNVQNK YLTVAAVFRGRMSMKEVDEQMLNVQNKNSS SMKEVDEQMLNVQNKNSSYFVEWIPNNVKT K E V N K N 0 0 2 1 0 2 2 0 0 0 1 1 1 0 0 0 0 0 0 2 0 0 12 0 1445.682 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;B4DMU8;Q96B85;B4DXZ5;B4DMJ5;Q1KSF8;Q6P602;A4UCT2;Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;Q96HX0;Q9BVA1;Q13885;A0A024QZU2;B2R6L0;O43209;B7Z4N1;Q9UGA2 Q5JP53 307 318 TUBB;XTP3TPATP1;TUBB2C;TUBB4B;TUBB2B;TUBB2A;DKFZp566F223 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain no no 2 5.2394E-45 196.88 11 6 3.3388 0.51425 115.1 13 Linear 0.39226 0.49289 5.9368 9 0 Median 3.3929 5.3415 2.1369 4 0 Median 481800000 182640000 299150000 149420000 106640000 42779000 332370000 76001000 256370000 3325 1241;1423;1479 3409;3410 12058;12059;12060;12061;12062;12063;12064;12065;12066;12067;12068;12069;12070;12071;12072;12073;12074 18274;18275;18276;18277;18278;18279;18280;18281;18282;18283;18284;18285;18286;18287;18288;18289;18290;18291;18292;18293;18294;18295;18296;18297;18298;18299;18300;18301;18302 18300 482 28 EVDLSDIINTPLPR FASGGGRELYFYEEKEVDLSDIINTPLPRV KEVDLSDIINTPLPRVPLDVCLKAPKEQQK K E V P R V 0 1 1 2 0 0 1 0 0 2 2 0 0 0 2 1 1 0 0 1 0 0 14 0 1580.841 B3KUR4;A4D299;J3KR72;P49848;C9JIS2;E5RHA1;C9J088;C9JFL8;C9JTY6 B3KUR4 54 67 TAF6 Transcription initiation factor TFIID subunit 6 yes no 2 3.422E-05 114.86 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3326 553 3411 12075;12076;12077 18303;18304;18305 18304 3 EVDNLYNIEILR IRIKQIESDRQNLLKEVDNLYNIEILRLPK LLKEVDNLYNIEILRLPKALREMNWLDYFA K E V L R L 0 1 2 1 0 0 2 0 0 2 2 0 0 0 0 0 0 0 1 1 0 0 12 0 1489.7777 A8K7A2;Q53HL2 A8K7A2 49 60 CDCA8 Borealin yes no 2 5.3481E-29 198.25 4 2 0.98338 1.3548 15.502 6 Median 1.0104 1.3823 6.2273 4 0 Median 0.64315 1.0636 2.325 2 0 Median 959750000 525180000 434580000 469560000 218310000 251260000 490190000 306870000 183320000 3327 632 3412 12078;12079;12080;12081;12082;12083 18306;18307;18308;18309;18310;18311;18312;18313;18314;18315;18316;18317 18310 12 EVDYSDSLTEK EEEEKMFGRGSRHRKEVDYSDSLTEKQWLK RHRKEVDYSDSLTEKQWLKAIEEGTLEEIE K E V E K Q 0 0 0 2 0 0 2 0 0 0 1 1 0 0 0 2 1 0 1 1 0 0 11 0 1284.5721 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;B4E0F1;B4DSI8;B3KNW7;K7EP28 A7E2E1 1376 1386 SMARCA4 Transcription activator BRG1 yes no 2 0.0012386 71.614 4 2 1.0243 1.3593 17.399 5 Median 1.0243 1.3128 17.991 3 0 Median 1.0035 1.4956 1.382 2 0 Median 38139000 21250000 16889000 22765000 13481000 9284200 15374000 7768800 7604900 3328 403 3413 12084;12085;12086;12087;12088;12089 18318;18319;18320;18321;18322;18323 18321 6 EVEAQLPEK LHKVLRPFLLRRLKKEVEAQLPEKVEYVIK LRRLKKEVEAQLPEKVEYVIKCDMSALQRV K E V E K V 1 0 0 0 0 1 3 0 0 0 1 1 0 0 1 0 0 0 0 1 0 0 9 0 1041.5342 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;Q59FZ6;B4E0F1;B4DSI8;B3KNW7 A7E2E1 983 991 SMARCA4 Transcription activator BRG1 yes no 2 0.0070124 68.224 2 1.017 1.5185 1.2841 2 Median NaN NaN NaN 0 0 Median 1.017 1.5185 1.2841 2 0 Median 18038000 8667900 9369900 0 0 0 18038000 8667900 9369900 3329 403 3414 12090;12091 18324;18325;18326 18325 3 EVEAVIPDHCIFASNTSALPISEIAAVSK EAVFEDLSLKHRVLKEVEAVIPDHCIFASN NTSALPISEIAAVSKRPEKVIGMHYFSPVD K E V S K R 5 0 1 1 1 0 3 0 1 4 1 1 0 1 2 4 1 0 0 3 0 0 29 0 3067.5536 B4DDZ5;E9KL44;P40939;B4DRH6 E9KL44 461 489 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase no no 3 6.8377E-43 132.79 4 0.63149 0.80868 12.52 4 Median 0.63149 0.80868 12.52 4 0 Median NaN NaN NaN 0 0 Median 105010000 62262000 42753000 105010000 62262000 42753000 0 0 0 3330 1020;797 3415 12092;12093;12094;12095 18327;18328;18329;18330;18331;18332;18333;18334;18335 18333 9 EVEDKESEGEEEDEDEDLSK KKYRGKAVGPASILKEVEDKESEGEEEDED ESEGEEEDEDEDLSKYKLDEDEDEDDADLS K E V S K Y 0 0 0 4 0 0 9 1 0 0 1 2 0 0 0 2 0 0 0 1 0 0 20 1 2338.9296 O95218 O95218 147 166 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 yes yes 3 3.3556E-07 64.422 1 2 0.63631 0.96829 20.496 3 Median 0.55822 0.68131 NaN 1 0 Median 0.63856 0.97163 0.48681 2 0 Median 17524000 11156000 6367900 6653100 4467400 2185800 10871000 6689000 4182200 3331 1214 3416 12096;12097;12098 18336;18337;18338;18339;18340 18339 5 EVEEISLLQPQVEESVLNLGK VLFEHAVGYALLALKEVEEISLLQPQVEES LLQPQVEESVLNLGKFHSIVRLVAFCPFAS K E V G K F 0 0 1 0 0 2 5 1 0 1 4 1 0 0 1 2 0 0 0 3 0 0 21 0 2352.2424 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 21 41 NOP56 Nucleolar protein 56 yes no 2 1.5872E-31 225.33 3 0.71298 0.90283 7.7599 3 Median 0.71298 0.90283 7.7599 3 0 Median NaN NaN NaN 0 0 Median 191750000 108160000 83592000 191750000 108160000 83592000 0 0 0 3332 647 3417 12099;12100;12101 18341;18342;18343;18344;18345;18346;18347;18348;18349 18342 9 EVEIVASSDSSISSK LSGDDSSTCIGILAKEVEIVASSDSSISSK EVEIVASSDSSISSKARGSNKVKIQPVAKY K E V S K A 1 0 0 1 0 0 2 0 0 2 0 1 0 0 0 6 0 0 0 2 0 0 15 0 1536.7519 Q6P2E9;B7Z7V8 Q6P2E9 97 111 EDC4 Enhancer of mRNA-decapping protein 4 yes no 2 2.8607E-05 75.819 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1446900 1446900 0 1446900 1446900 0 0 0 0 3333 1591 3418 12102 18350 18350 1 EVELNELEPEK ______________________________ VDMKEVELNELEPEKQPMNAASGAAMSLAG K E V E K Q 0 0 1 0 0 0 5 0 0 0 2 1 0 0 1 0 0 0 0 1 0 0 11 0 1327.6507 B4E2Z3;F5GZS6;J3KPF3;P08195;A0A024R599;H0YFS2;F5H0E2;F5H867;B4E3E4 B4E2Z3 11 21 SLC3A2 4F2 cell-surface antigen heavy chain yes no 2 0.0023453 63.397 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3334 889 3419 12103 18351 18351 1 EVELVSE DSDTTKKKKKKKKAKEVELVSE________ KKKKKKAKEVELVSE_______________ K E V S E - 0 0 0 0 0 0 3 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 7 0 803.39126 O60832 O60832 508 514 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 1 0.00011169 140.01 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4188600 0 0 4188600 0 0 0 0 0 3335 1193 3420 12104;12105 18352;18353 18353 2 EVEQFDVATHLQTAPELVDR GKQQNKHVFFFDTKKEVEQFDVATHLQTAP DVATHLQTAPELVDRVFNRPRIETLQKEKV K E V D R V 2 1 0 2 0 2 3 0 1 0 2 0 0 1 1 0 2 0 0 3 0 0 20 0 2296.1335 Q9Y3A2 Q9Y3A2 145 164 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 2;3 4.1904E-32 131.67 5 2 0.93583 1.2788 13.421 6 Median 0.95807 1.3107 2.8438 4 0 Median 0.65172 1.0258 10.256 2 0 Median 300230000 159660000 140570000 236390000 123770000 112620000 63843000 35892000 27951000 3336 1814 3421 12106;12107;12108;12109;12110;12111;12112 18354;18355;18356;18357;18358;18359;18360;18361;18362;18363;18364 18360 11 EVETQALALSTNR ETGEERDLMVHNIMKEVETQALALSTNRTG MKEVETQALALSTNRTGSEMLQELLGFSPL K E V N R T 2 1 1 0 0 1 2 0 0 0 2 0 0 0 0 1 2 0 0 1 0 0 13 0 1430.7365 Q5HYL4;Q86U38 Q5HYL4 92 104 DKFZp686E1893;NOP9 Nucleolar protein 9 yes no 2 0.042498 73.632 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 657120 657120 0 657120 657120 0 0 0 0 3337 1557 3422 12113 18365 18365 1 EVEVEVESMDK SEEATLFTKELVLQREVEVEVESMDKAGNF VLQREVEVEVESMDKAGNFIGWLHIDGANL R E V D K A 0 0 0 1 0 0 4 0 0 0 0 1 1 0 0 1 0 0 0 3 0 0 11 0 1292.5806 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B4E299;B3KU67 A0A140VK49 593 603 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 7.2106E-05 89.247 2 2.5336 3.5264 5.539 2 Median NaN NaN NaN 0 0 Median 2.5336 3.5264 5.539 2 0 Median 9949900 3375100 6574800 0 0 0 9949900 3375100 6574800 3338 508 3423 12114;12115 18366;18367 18366 178 2 EVEVIGGADK CFQEAAYTKRLGTEKEVEVIGGADKYHSVC LGTEKEVEVIGGADKYHSVCRLCYFKKASG K E V D K Y 1 0 0 1 0 0 2 2 0 1 0 1 0 0 0 0 0 0 0 2 0 0 10 0 1015.5186 B5BUF9;B5BU32;A0A024R8N6;P04183 B5BUF9 171 180 TK1 Thymidine kinase;Thymidine kinase, cytosolic yes no 2 0.0030349 68.371 1 0.32209 0.39467 NaN 1 Median 0.32209 0.39467 NaN 1 0 Median NaN NaN NaN 0 0 Median 20259000 15284000 4974400 20259000 15284000 4974400 0 0 0 3339 200 3424 12116 18368 18368 1 EVFEDAAEIR LAKNLPYKVTQDELKEVFEDAAEIRLVSKD QDELKEVFEDAAEIRLVSKDGKSKGIAYIE K E V I R L 2 1 0 1 0 0 3 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 10 0 1177.5615 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99;H7BY16 B3KTP9 334 343 NCL Nucleolin yes no 2 3.2194E-22 172.23 2 0.70265 1.1423 1.0238 2 Median NaN NaN NaN 0 0 Median 0.70265 1.1423 1.0238 2 0 Median 140410000 83059000 57347000 0 0 0 140410000 83059000 57347000 3340 119 3425 12117;12118 18369;18370 18370 2 EVFEMATR FGYMECSAKTKDGVREVFEMATRAALQARR KTKDGVREVFEMATRAALQARRGKKKSGCL R E V T R A 1 1 0 0 0 0 2 0 0 0 0 0 1 1 0 0 1 0 0 1 0 0 8 0 981.45897 B4DKN9;Q5JR08;A0A024R324;A0A024R0I3;P61586;P08134;Q9BVT0;A0A0B6XK12 B4DKN9 149 156 RHOC;RHOA;hCG_2043376;ARHA Transforming protein RhoA;Rho-related GTP-binding protein RhoC yes no 2 0.037361 49.097 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1854000 0 1854000 0 0 0 1854000 0 1854000 3341 38 3426 12119 18371 18371 1 EVFSMAGVVVR FVANLDYKVGWKKLKEVFSMAGVVVRADIL KKLKEVFSMAGVVVRADILEDKDGKSRGIG K E V V R A 1 1 0 0 0 0 1 1 0 0 0 0 1 1 0 1 0 0 0 4 0 0 11 0 1192.6274 P52272;A0A087X0X3;Q59ES8;Q7KYM9;M0R019;B4DEG4;M0R2T0;M0R0N3;M0QYQ7;M0QZM1 P52272 222 232 HNRNPM;ORF Heterogeneous nuclear ribonucleoprotein M no no 2 0.050465 60.828 1 0.29416 0.41185 NaN 1 Median 0.29416 0.41185 NaN 1 0 Median NaN NaN NaN 0 0 Median 2197500 1660500 536920 2197500 1660500 536920 0 0 0 3342 1363;1160 3427 12120 18372 18372 1 EVGSIIGK GLNVTLTIRLLMHGKEVGSIIGKKGESVKK RLLMHGKEVGSIIGKKGESVKKMREESGAR K E V G K K 0 0 0 0 0 0 1 2 0 2 0 1 0 0 0 1 0 0 0 1 0 0 8 0 801.45962 Q15366;B4DLC0;F8W0G4;F8W1G6;J3QT27;Q5MJP6;E9PFP8;P57721;F8VTZ0;H3BSP4;C9K0A2;F8WC71;C9IZV9;C9J7A9;C9JSA6;C9J5V4;C9JTY5;C9JZY3;C9J0A4;F6TJN8;Q7Z4Y9;A0A024R320;P57723;H3BRU6;F8VZX2;Q53SS8;Q15365 Q53SS8 24 31 PCBP2;PCBP3;PCBP4;PCBP1 Poly(rC)-binding protein 2;Poly(rC)-binding protein 3;Poly(rC)-binding protein 4;Poly(rC)-binding protein 1 no no 2 0.019931 58.782 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11365000 0 11365000 0 0 0 11365000 0 11365000 3343 1510;1064;1509 3428 12121 18373 18373 1 EVIAVSCGPAQCQETIR AVEEAVRLKEKKLVKEVIAVSCGPAQCQET IAVSCGPAQCQETIRTALAMGADRGIHVEV K E V I R T 2 1 0 0 2 2 2 1 0 2 0 0 0 0 1 1 1 0 0 2 0 0 17 0 1916.9084 P38117 P38117 60 76 ETFB Electron transfer flavoprotein subunit beta yes yes 2 1.1497E-68 223.36 5 0.76832 1.0564 NaN 1 Median 0.76832 1.0564 NaN 1 0 Median NaN NaN NaN 0 0 Median 9953500 8964700 988740 9953500 8964700 988740 0 0 0 3344 1327 3429 12122;12123;12124;12125;12126 18374;18375;18376;18377;18378 18375 5 EVIDLLKPDQVEGIQK PLMDNADSSPVVDKREVIDLLKPDQVEGIQ VIDLLKPDQVEGIQKSGTKKLKTETDKENA R E V Q K S 0 0 0 2 0 2 2 1 0 2 2 2 0 0 1 0 0 0 0 2 0 0 16 1 1823.004 A0A024R663;Q86UP2 A0A024R663 250 265 KTN1 Kinectin yes no 3 1.6108E-05 53.328 2 0.29292 0.46383 3.3476 2 Median NaN NaN NaN 0 0 Median 0.29292 0.46383 3.3476 2 0 Median 22070000 16194000 5876000 0 0 0 22070000 16194000 5876000 3345 155 3430 12127;12128 18379;18380 18379 2 EVIELPLTNPELFQR YSEIGGLSEQIRELREVIELPLTNPELFQR EVIELPLTNPELFQRVGIIPPKGCLLYGPP R E V Q R V 0 1 1 0 0 1 3 0 0 1 3 0 0 1 2 0 1 0 0 1 0 0 15 0 1796.9672 V9HW24;A0A087X2I1;P62333;H0YJC0;H0YJS8;B4DR91 V9HW24 147 161 HEL-S-73;PSMC6 26S protease regulatory subunit 10B yes no 2 1.2678E-22 141.88 3 0.37968 0.51165 10.854 2 Median 0.37968 0.51165 10.854 2 0 Median NaN NaN NaN 0 0 Median 30094000 23889000 6204900 30094000 23889000 6204900 0 0 0 3346 379 3431 12129;12130;12131 18381;18382;18383;18384 18383 4 EVIELPVK YEMIGGLDKQIKEIKEVIELPVKHPELFEA KQIKEIKEVIELPVKHPELFEALGIAQPKG K E V V K H 0 0 0 0 0 0 2 0 0 1 1 1 0 0 1 0 0 0 0 2 0 0 8 0 925.54843 Q59GS3;A0A140VJS3;P62195;J3QLH6;J3KRP2;J3QSA9;J3QRW1;J3QQM1;J3QRR3;J3QSE0 Q59GS3 159 166 PSMC5 26S protease regulatory subunit 8 yes no 2 0.04039 46.016 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1358400 0 1358400 0 0 0 1358400 0 1358400 3347 503 3432 12132 18385 18385 1 EVINRPFTNESLQPHALGPVK YLDTVSALNFAARSKEVINRPFTNESLQPH FTNESLQPHALGPVKLSQKELLGPPEAKRA K E V V K L 1 1 2 0 0 1 2 1 1 1 2 1 0 1 3 1 1 0 0 2 0 0 21 1 2345.2492 Q14807;A0A024R632;H3BRB3 Q14807 367 387 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 3;4 3.8295E-32 163.44 5 1 0.82885 1.0804 21.335 6 Median 0.84835 1.0995 13.65 5 0 Median 0.47502 0.7406 NaN 1 0 Median 111140000 56521000 54617000 104190000 51575000 52612000 6951400 4946100 2005400 3348 1497 3433 12133;12134;12135;12136;12137;12138 18386;18387;18388;18389;18390;18391;18392;18393;18394 18389 9 EVIQLK EDAEKFRQWKQKKDKEVIQLKERDRKRQYE RQWKQKKDKEVIQLKERDRKRQYELLKLER K E V L K E 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 6 0 728.44324 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 674 679 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.04505 74.717 1 0.63489 0.96397 NaN 1 Median NaN NaN NaN 0 0 Median 0.63489 0.96397 NaN 1 0 Median 23989000 14246000 9743300 0 0 0 23989000 14246000 9743300 3349 1216 3434 12139 18395 18395 1 EVITAQDTVIK KESVNKAQEEVTKQKEVITAQDTVIKAKYA TKQKEVITAQDTVIKAKYAEVAKHKEQNND K E V I K A 1 0 0 1 0 1 1 0 0 2 0 1 0 0 0 0 2 0 0 2 0 0 11 0 1215.6711 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27 A0A024R158 880 890 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.0032769 68.846 3 2 0.67062 0.9622 8.6409 5 Median 0.71701 0.89422 6.7824 3 0 Median 0.64406 1.021 2.6708 2 0 Median 164630000 95256000 69371000 94973000 53635000 41338000 69654000 41622000 28033000 3350 50 3435 12140;12141;12142;12143;12144 18396;18397;18398;18399;18400;18401;18402;18403;18404 18399 9 EVKEEIDPDEEESAK KGKSGPNTQNEDIEKEVKEEIDPDEEESAK EVKEEIDPDEEESAKKKHLDKKRKLKEMFD K E V A K K 1 0 0 2 0 0 6 0 0 1 0 2 0 0 1 1 0 0 0 1 0 0 15 1 1745.7843 Q14692 Q14692 808 822 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 5.01E-55 211.77 4 2 0.82717 1.1058 12.859 5 Median 0.90109 1.1007 17.857 3 0 Median 0.71475 1.1286 2.8815 2 0 Median 52438000 28681000 23757000 32910000 16856000 16054000 19528000 11825000 7702900 3351 1495 3436 12145;12146;12147;12148;12149;12150 18405;18406;18407;18408;18409;18410;18411;18412 18405 8 EVKEEIDPDEEESAKK KGKSGPNTQNEDIEKEVKEEIDPDEEESAK VKEEIDPDEEESAKKKHLDKKRKLKEMFDA K E V K K K 1 0 0 2 0 0 6 0 0 1 0 3 0 0 1 1 0 0 0 1 0 0 16 2 1873.8793 Q14692 Q14692 808 823 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 0.0016626 80.488 2 0.7492 0.86634 51.257 2 Median 0.7492 0.86634 51.257 2 0 Median NaN NaN NaN 0 0 Median 6345600 3189000 3156600 6345600 3189000 3156600 0 0 0 3352 1495 3437 12151;12152 18413;18414 18414 2 EVLAGRPLFPHVLCHNCAVEFNFGQK AKNGQDLGVAFKISKEVLAGRPLFPHVLCH VLCHNCAVEFNFGQKEKPYFPIPEEYTFIQ K E V Q K E 2 1 2 0 2 1 2 2 2 0 3 1 0 3 2 0 0 0 0 3 0 0 26 1 3038.5007 Q96BA7;B3KX72;B4DLR3;Q00839;Q7Z4Q5 Q96BA7 334 359 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U no no 4 3.7609E-14 69.619 3 0.4156 0.53926 23.457 3 Plateau 0.4156 0.53926 23.457 3 0 Plateau NaN NaN NaN 0 0 Median 74877000 52488000 22389000 74877000 52488000 22389000 0 0 0 3353 788 3438 12153;12154;12155 18415;18416;18417 18416 3 EVLCPESQSPNGVR WEESRIKVFLDVLMKEVLCPESQSPNGVRF KEVLCPESQSPNGVRFHFIDIYLDELSKVG K E V V R F 0 1 1 0 1 1 2 1 0 0 1 0 0 0 2 2 0 0 0 2 0 0 14 0 1570.741 Q14684;Q6PJM8 Q14684 152 165 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 2 4.5971E-06 108.31 4 0.59413 0.77626 NaN 1 Median 0.59413 0.77626 NaN 1 0 Median NaN NaN NaN 0 0 Median 11667000 8767200 2900100 11667000 8767200 2900100 0 0 0 3354 1493 3439 12156;12157;12158;12159 18418;18419;18420;18421 18420 4 EVLHNQLLLQTQLVDQLQQQEAQGK LQQYVAAYQQLTSEKEVLHNQLLLQTQLVD TQLVDQLQQQEAQGKAVAEMARQELQETQE K E V G K A 1 0 1 1 0 8 2 1 1 0 6 1 0 0 0 0 1 0 0 2 0 0 25 0 2900.5356 Q08379 Q08379 634 658 GOLGA2 Golgin subfamily A member 2 yes yes 3 2.4435E-14 123.64 2 0.51382 0.64841 NaN 1 Median 0.51382 0.64841 NaN 1 0 Median NaN NaN NaN 0 0 Median 16904000 11769000 5135200 16904000 11769000 5135200 0 0 0 3355 1449 3440 12160;12161 18422;18423;18424 18422 3 EVLLEAQDMAVR AQLEFNDKKGAKIIKEVLLEAQDMAVRDHN IIKEVLLEAQDMAVRDHNVEFRSNLYIAES K E V V R D 2 1 0 1 0 1 2 0 0 0 2 0 1 0 0 0 0 0 0 2 0 0 12 0 1372.7021 E7ESL0;J3KQY1;Q9NWU5 E7ESL0 119 130 MRPL22 39S ribosomal protein L22, mitochondrial yes no 2 0.037969 42.718 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2368900 0 2368900 0 0 0 2368900 0 2368900 3356 1013 3441 12162 18425 18425 1 EVLNAVK RLATSVLKDEKSNLKEVLNAVKELELAHRY KDEKSNLKEVLNAVKELELAHRYFSYLSKV K E V V K E 1 0 1 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 7 0 771.44905 A8K6X9;Q6PD62 A8K6X9 778 784 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2 0.036028 57.102 2 0.68603 0.86883 22.272 2 Median 0.68603 0.86883 22.272 2 0 Median NaN NaN NaN 0 0 Median 23725000 14009000 9715900 23725000 14009000 9715900 0 0 0 3357 629 3442 12163;12164 18426;18427 18426 2 EVLPHVPLGVIQR PSPDVQLATLAQRVKEVLPHVPLGVIQRDL VKEVLPHVPLGVIQRDLAKTGCVDLTITNL K E V Q R D 0 1 0 0 0 1 1 1 1 1 2 0 0 0 2 0 0 0 0 3 0 0 13 0 1455.8562 Q68CX8;A8KAQ6;B4E3W1;Q9Y679 Q68CX8 308 320 DKFZp686P12272;AUP1 Ancient ubiquitous protein 1 yes no 3 0.00012316 54.772 1 0.23128 0.31114 NaN 1 Median 0.23128 0.31114 NaN 1 0 Median NaN NaN NaN 0 0 Median 7714900 6072500 1642400 7714900 6072500 1642400 0 0 0 3358 656 3443 12165 18428;18429 18429 2 EVLPSTR SPAKIHVFYIDYGNREVLPSTRLGTLSPAF FYIDYGNREVLPSTRLGTLSPAFSTRVLPA R E V T R L 0 1 0 0 0 0 1 0 0 0 1 0 0 0 1 1 1 0 0 1 0 0 7 0 800.43922 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B4E299;B3KU67 A0A140VK49 770 776 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.021669 66.993 2 0.51096 0.69408 NaN 1 Median 0.51096 0.69408 NaN 1 0 Median NaN NaN NaN 0 0 Median 14760000 11247000 3512900 14760000 11247000 3512900 0 0 0 3359 508 3444 12166;12167 18430;18431 18431 2 EVLQALEELAVNYDQK NRLQAENDASKEEVKEVLQALEELAVNYDQ VLQALEELAVNYDQKSQEVEDKTKEYELLS K E V Q K S 2 0 1 1 0 2 3 0 0 0 3 1 0 0 0 0 0 0 1 2 0 0 16 0 1860.9469 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;M1V490;M1VPF9;M1V481;M1VPF7;M1VRN0;M1VKI9;M1VE89;A0A0G2JMZ6;A1L179;B2RCP3;O60282;Q12840;J3KNA1;B7Z2M7;Q57Z91;Q3LIE3 V9HW29 490 505 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5B-RET(NM_020630)_K22;R12;KIF5B-RET(NM_020975)_K22;R12;KIF5B-ALK_K17;A20;KIF5B-RET(NM_020630)_K15;R12;KIF5B-RET(NM_020975)_K15;R12;KIF5B-RET(NM_020630)_K16;R12;KIF5B-RET(NM_020975)_K16;R12;KIF5C;KIF5A;Nbla04137 Kinesin-like protein;Kinesin-1 heavy chain;Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A yes no 2 3.9217E-23 174.72 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 840190 840190 0 840190 840190 0 0 0 0 3360 978 3445 12168 18432 18432 1 EVLVVNSQGEISR AAAAHEANKLFKEGKEVLVVNSQGEISRLS GKEVLVVNSQGEISRLSTKKEVIMKGNINN K E V S R L 0 1 1 0 0 1 2 1 0 1 1 0 0 0 0 2 0 0 0 3 0 0 13 0 1428.7573 E7ETD6;Q12830;F5GXF5;A0A0A0MR81;B4DDK2;B4DM40 E7ETD6 672 684 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 4.493E-08 118.28 4 2 0.82356 1.1568 48.387 5 Median 0.74929 1.0197 23.632 3 0 Median 1.532 2.1818 0.43881 2 0 Median 28873000 14721000 14152000 16156000 9952100 6204200 12716000 4769100 7947300 3361 1015 3446 12169;12170;12171;12172;12173;12174 18433;18434;18435;18436;18437;18438;18439 18436 7 EVMLQNGETPK VVEDKEEKKEEEEKKEVMLQNGETPKDLND EEKKEVMLQNGETPKDLNDEKQKKNIKQRF K E V P K D 0 0 1 0 0 1 2 1 0 0 1 1 1 0 1 0 1 0 0 1 0 0 11 0 1244.6071 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 1645 1655 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.00044126 76.465 1 0.93181 1.3743 NaN 1 Median NaN NaN NaN 0 0 Median 0.93181 1.3743 NaN 1 0 Median 9023800 3610900 5412900 0 0 0 9023800 3610900 5412900 3362 428 3447 12175 18440 18440 144 1 EVNDLLQENEQLMK QEIMTLKEEQNKMQKEVNDLLQENEQLMKV KEVNDLLQENEQLMKVMKTKHECQNLESEP K E V M K V 0 0 2 1 0 2 3 0 0 0 3 1 1 0 0 0 0 0 0 1 0 0 14 0 1701.8244 P49454 P49454 1145 1158 CENPF Centromere protein F yes yes 2 0.023912 42.243 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2748800 2748800 0 0 0 0 2748800 2748800 0 3363 1351 3448 12176 18441 18441 589 1 EVNFSVDQNTSSENK LANLKLHTEDSRMKKEVNFSVDQNTSSENK EVNFSVDQNTSSENKIDFNDFIKRLKTGKC K E V N K I 0 0 3 1 0 1 2 0 0 0 0 1 0 1 0 3 1 0 0 2 0 0 15 0 1696.754 Q8NG31;E9PPJ1 Q8NG31 224 238 CASC5 Protein CASC5 no no 2 1.5162E-33 199.12 4 2 0.54735 0.80919 7.0782 6 Linear 0.58094 0.73447 3.3534 4 0 Linear 0.53793 0.81145 1.04 2 0 Median 41405000 25674000 15731000 18652000 11220000 7432500 22753000 14455000 8298600 3364 1656 3449 12177;12178;12179;12180;12181;12182 18442;18443;18444;18445;18446;18447;18448;18449 18443 8 EVNFTSELR DERIKQHPKNQEEYKEVNFTSELRKHPSSP NQEEYKEVNFTSELRKHPSSPARVTKGCTI K E V L R K 0 1 1 0 0 0 2 0 0 0 1 0 0 1 0 1 1 0 0 1 0 0 9 0 1093.5404 Q643R0;Q9ULW0;B3KM90 Q643R0 280 288 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 0.00024962 94.114 1 1 0.58937 0.77695 NaN 1 Median 0.58937 0.77695 NaN 1 0 Median NaN NaN NaN 0 0 Median 17058000 14759000 2299100 6739100 4440000 2299100 10319000 10319000 0 3365 1581 3450 12183;12184 18450;18451 18451 2 EVNFTSELRK DERIKQHPKNQEEYKEVNFTSELRKHPSSP QEEYKEVNFTSELRKHPSSPARVTKGCTIV K E V R K H 0 1 1 0 0 0 2 0 0 0 1 1 0 1 0 1 1 0 0 1 0 0 10 1 1221.6354 Q643R0;Q9ULW0;B3KM90 Q643R0 280 289 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2;3 7.3252E-05 120.99 3 2 0.66185 1.1005 5.3679 3 Median 0.89155 1.1978 NaN 1 0 Median 0.63996 1.0924 1.042 2 0 Median 98830000 45087000 53742000 30252000 2708900 27543000 68578000 42378000 26200000 3366 1581 3451 12185;12186;12187;12188;12189 18452;18453;18454;18455;18456;18457 18454 6 EVNIVLPTQSIVPR GLTKENCILNLLTEKEVNIVLPTQSIVPRT KEVNIVLPTQSIVPRTFVLKPGMVLFLGAI K E V P R T 0 1 1 0 0 1 1 0 0 2 1 0 0 0 2 1 1 0 0 3 0 0 14 0 1563.8984 B3KY51;Q8NC60 B3KY51 514 527 NOA1 Nitric oxide-associated protein 1 yes no 2 0.00045071 84.169 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2735500 2735500 0 2735500 2735500 0 0 0 0 3367 791 3452 12190;12191 18458;18459;18460 18460 3 EVNSQEEEEEELLRK EQFALALKMSEQEAREVNSQEEEEEELLRK EVNSQEEEEEELLRKAIAESLNSCRPSDAS R E V R K A 0 1 1 0 0 1 7 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 15 1 1859.8749 A0A024R7R0;Q96RL1;D6RC40;D6RCQ3 A0A024R7R0 98 112 RAP80;UIMC1 BRCA1-A complex subunit RAP80 yes no 3 0.00017662 118.73 1 2 0.74751 1.1246 13.272 2 Median NaN NaN NaN 0 0 Median 0.74751 1.1246 13.272 2 0 Median 11331000 7237000 4094300 2141700 2141700 0 9189700 5095300 4094300 3368 183 3453 12192;12193;12194 18461;18462;18463;18464 18461 4 EVPAVPETLK LFPAGTMEGVEEKKKEVPAVPETLKKKRRN EEKKKEVPAVPETLKKKRRNFAELKIKRLR K E V L K K 1 0 0 0 0 0 2 0 0 0 1 1 0 0 2 0 1 0 0 2 0 0 10 0 1081.6019 A0A024R814;P18124 A0A024R814 21 30 RPL7 60S ribosomal protein L7 yes no 2 0.00011837 131.62 3 0.75228 1.0043 0.63796 3 Median 0.75228 1.0043 0.63796 3 0 Median NaN NaN NaN 0 0 Median 1163600000 681320000 482240000 1163600000 681320000 482240000 0 0 0 3369 189 3454 12195;12196;12197 18465;18466;18467;18468;18469 18467 5 EVPAVPETLKK LFPAGTMEGVEEKKKEVPAVPETLKKKRRN EKKKEVPAVPETLKKKRRNFAELKIKRLRK K E V K K K 1 0 0 0 0 0 2 0 0 0 1 2 0 0 2 0 1 0 0 2 0 0 11 1 1209.6969 A0A024R814;P18124 A0A024R814 21 31 RPL7 60S ribosomal protein L7 yes no 2;3 0.00078623 89.913 8 2 0.80005 0.99167 3.9747 10 Median 0.81159 0.99167 4.1611 8 0 Median 0.61958 0.997 4.3903 2 0 Median 824400000 457940000 366460000 739780000 407690000 332090000 84618000 50251000 34368000 3370 189 3455 12198;12199;12200;12201;12202;12203;12204;12205;12206;12207 18470;18471;18472;18473;18474;18475;18476;18477;18478;18479;18480;18481;18482;18483;18484;18485;18486;18487 18487 18 EVPDYLDHIK DKDPARIFAQPVSLKEVPDYLDHIKHPMDF PVSLKEVPDYLDHIKHPMDFATMRKRLEAQ K E V I K H 0 0 0 2 0 0 1 0 1 1 1 1 0 0 1 0 0 0 1 1 0 0 10 0 1227.6136 Q86X06;A0A024R4V5;B4E3L9;A0A024R4W4;O95696;B7Z926;Q9Y4Q3;J3KQ61;Q59G93;B4DZC2 Q86X06 595 604 BRD1;DKFZp434B094 Bromodomain-containing protein 1 yes no 2 0.0065651 58.433 1 0.98203 1.2398 NaN 1 Median 0.98203 1.2398 NaN 1 0 Median NaN NaN NaN 0 0 Median 9669600 5154500 4515100 9669600 5154500 4515100 0 0 0 3371 128 3456 12208 18488;18489 18488 2 EVPEYLNHVSK NCLYAAEGQRLMQEREVPEYLNHVSKRLEE MQEREVPEYLNHVSKRLEEEGDRVITYLDH R E V S K R 0 0 1 0 0 0 2 0 1 0 1 1 0 0 1 1 0 0 1 2 0 0 11 0 1313.6616 Q13619;A0A0A0MR50;B2RBV7 Q13619 255 265 CUL4A Cullin-4A yes no 2;3 0.010783 48.44 2 0.72582 0.92013 21.517 2 Median 0.72582 0.92013 21.517 2 0 Median NaN NaN NaN 0 0 Median 16039000 8824300 7215000 16039000 8824300 7215000 0 0 0 3372 1474 3457 12209;12210 18490;18491 18490 2 EVPIPEHIDIYHLTR NGIGKSMLLSAIGKREVPIPEHIDIYHLTR EVPIPEHIDIYHLTREMPPSDKTPLHCVME R E V T R E 0 1 0 1 0 0 2 0 2 3 1 0 0 0 2 0 1 0 1 1 0 0 15 0 1830.9628 A0A090N7X1;A0A090N7Y2;Q9UG63;C9JHK9;C9JZV3 A0A090N7X1 135 149 ABCF2 ATP-binding cassette sub-family F member 2 yes no 3;4 3.3656E-05 67.605 2 1 0.4849 0.64994 NaN 1 Median 0.4849 0.64994 NaN 1 0 Median NaN NaN NaN 0 0 Median 26200000 20603000 5596800 23598000 20603000 2995300 2601500 0 2601500 3373 380 3458 12211;12212;12213 18492;18493;18494;18495 18495 4 EVPLPAGIYNLDDLK LPHCRFYEEFDAHGREVPLPAGIYNLDDLK EVPLPAGIYNLDDLKALGRRQGWCPYFLAR R E V L K A 1 0 1 2 0 0 1 1 0 1 3 1 0 0 2 0 0 0 1 1 0 0 15 0 1655.877 A8MX75;P18074;K7EIT8 A8MX75 143 157 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit yes no 2 0.0019952 56.225 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4715700 4715700 0 4715700 4715700 0 0 0 0 3374 660 3459 12214 18496 18496 1 EVPTQFLDRDEEEEDADFLK QAPSLPNTSEAQKIKEVPTQFLDRDEEEED FLDRDEEEEDADFLKVKRHNVFGLDLKDEK K E V L K V 1 1 0 4 0 1 5 0 0 0 2 1 0 2 1 0 1 0 0 1 0 0 20 1 2424.0969 Q13206;Q86VR6;E9PIF2;Q59EC7;B4DKX3 Q13206 618 637 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 3 0.0085761 46.337 2 0.95641 1.254 51.068 2 Median 0.95641 1.254 51.068 2 0 Median NaN NaN NaN 0 0 Median 18049000 8225200 9824100 18049000 8225200 9824100 0 0 0 3375 1466 3460 12215;12216 18497;18498 18497 2 EVQAVSNLSGQGK AEKMALTLLDYLFHREVQAVSNLSGQGKHG HREVQAVSNLSGQGKHGKKQLDPLTIYGIR R E V G K H 1 0 1 0 0 2 1 2 0 0 1 1 0 0 0 2 0 0 0 2 0 0 13 0 1315.6732 A0A0S2Z696;B3KM38;A0A0S2Z5C2;A0A0S2Z5G4;B4DE54;A0A0S2Z5M2;Q8N9N5 A0A0S2Z696 271 283 BANP Protein BANP yes no 2 4.493E-08 98.898 2 0.40951 0.51969 NaN 1 Median 0.40951 0.51969 NaN 1 0 Median NaN NaN NaN 0 0 Median 6725700 4741100 1984600 6725700 4741100 1984600 0 0 0 3376 477 3461 12217;12218 18499;18500;18501 18500 3 EVQDGIAPR PVPESGDGERVPEQKEVQDGIAPRMFKALI RVPEQKEVQDGIAPRMFKALIGKGHPEFST K E V P R M 1 1 0 1 0 1 1 1 0 1 0 0 0 0 1 0 0 0 0 1 0 0 9 0 983.50361 A0A140VJZ1;P45974 A0A140VJZ1 407 415 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 0.0043468 74.127 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2543700 0 2543700 0 0 0 2543700 0 2543700 3377 505 3462 12219;12220 18502;18503 18502 2 EVQGFESATFLGYFK VQLDDYLNGRAVQHREVQGFESATFLGYFK EVQGFESATFLGYFKSGLKYKKGGVASGFK R E V F K S 1 0 0 0 0 1 2 2 0 0 1 1 0 3 0 1 1 0 1 1 0 0 15 0 1721.8301 B7Z4U6;B7Z992;A0A0A0MS51;B7Z9A0;B7Z6N2;A0A0A0MT01;CON__Q3SX14;P06396;Q5T0I1;A0A0U1RQL8;Q5T0I0 B7Z4U6 114 128 GSN Gelsolin yes no 2 8.2503E-14 158.04 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9172900 9172900 0 9172900 9172900 0 0 0 0 + 3378 392 3463 12221;12222;12223 18504;18505;18506 18505 3 EVQILQQNR RILEALETEKQKIAKEVQILQQNRNNRDKT KQKIAKEVQILQQNRNNRDKTFTVQTTWSS K E V N R N 0 1 1 0 0 3 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1126.6095 Q15058 Q15058 1064 1072 KIF14 Kinesin-like protein KIF14 yes yes 2 0.0003667 116.9 2 0.53639 0.73738 1.143 2 Median 0.53639 0.73738 1.143 2 0 Median NaN NaN NaN 0 0 Median 17519000 11134000 6384900 17519000 11134000 6384900 0 0 0 3379 1504 3464 12224;12225 18507;18508;18509 18509 3 EVQLAQIFEPLSR AKQAVHCIHAIFTNKEVQLAQIFEPLSRSL NKEVQLAQIFEPLSRSLNADVPEQLITPLV K E V S R S 1 1 0 0 0 2 2 0 0 1 2 0 0 1 1 1 0 0 0 1 0 0 13 0 1528.8249 G1UI16;Q29RF7;H0Y9L6 G1UI16 751 763 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 5.3896E-08 132.03 3 0.36007 0.48843 20.761 3 Median 0.36007 0.48843 20.761 3 0 Median NaN NaN NaN 0 0 Median 24040000 16660000 7379700 24040000 16660000 7379700 0 0 0 3380 1076 3465 12226;12227;12228 18510;18511;18512;18513;18514 18512 5 EVQLGVADK NPLTKVKLINELNEREVQLGVADKVSWHSE NELNEREVQLGVADKVSWHSEYKDSAWIFL R E V D K V 1 0 0 1 0 1 1 1 0 0 1 1 0 0 0 0 0 0 0 2 0 0 9 0 957.51311 Q9Y6G0;Q9Y388;Q5JY83;Q05DU0;Q0VGM7 Q9Y6G0 17 25 RBMX2 RNA-binding motif protein, X-linked 2 yes no 2 0.032888 49.418 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3381 1813 3466 12229 18515 18515 1 EVQQHALIHQESK PFKCDICLLTFSDTKEVQQHALIHQESKTH TKEVQQHALIHQESKTHQCLHCDHKSSNSS K E V S K T 1 0 0 0 0 3 2 0 2 1 1 1 0 0 0 1 0 0 0 1 0 0 13 0 1545.79 A0A024RC04;B7ZKJ5;P17010;Q8WWU0;Q8WXB7;E9PEP7 A0A024RC04 619 631 ZFX Zinc finger X-chromosomal protein yes no 2;3 0.00012659 116.55 3 0.64571 0.83544 10.999 3 Median 0.64571 0.83544 10.999 3 0 Median NaN NaN NaN 0 0 Median 5090200 2914400 2175800 5090200 2914400 2175800 0 0 0 3382 286 3467 12230;12231;12232 18516;18517;18518;18519 18518 4 EVQSALSTAAADDSK TKSSENNSLNPEVMREVQSALSTAAADDSK EVQSALSTAAADDSKLVLLSAVGSVFCCGL R E V S K L 4 0 0 2 0 1 1 0 0 0 1 1 0 0 0 3 1 0 0 1 0 0 15 0 1491.7053 Q9Y232;C9JQG7 Q9Y232 374 388 CDYL Chromodomain Y-like protein yes no 2 4.2069E-51 230.81 4 2 0.90906 1.1269 17.464 6 Median 0.8907 1.104 2.4727 4 0 Median 1.0283 1.55 3.0565 2 0 Median 130950000 69682000 61268000 96472000 53141000 43331000 34479000 16541000 17938000 3383 1802 3468 12233;12234;12235;12236;12237;12238 18520;18521;18522;18523;18524;18525;18526;18527;18528;18529;18530;18531 18520 12 EVQSPEGMISLR FRIRVAYQREPQILKEVQSPEGMISLRDTA ILKEVQSPEGMISLRDTAASLRLERDTRQL K E V L R D 0 1 0 0 0 1 2 1 0 1 1 0 1 0 1 2 0 0 0 1 0 0 12 0 1344.6708 Q9H6R4;A0A0A0MRW6;B4DF80;B3KPN5 Q9H6R4 808 819 NOL6 Nucleolar protein 6 yes no 2 0.010529 82.831 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55914000 55914000 0 0 0 0 55914000 55914000 0 3384 1738 3469 12239;12240;12241 18532;18533;18534 18533 791 3 EVQVLVLDGR ______________________________ ______________________________ - E V G R G 0 1 0 1 0 1 1 1 0 0 2 0 0 0 0 0 0 0 0 3 0 0 10 0 1126.6346 Q9BSQ6 Q9BSQ6 1 10 RPL13A yes yes 2 0.015485 97.597 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1311600 0 1311600 1311600 0 1311600 0 0 0 3385 1712 3470 12242 18535 18535 1 EVSDDEAEEKEDKEEEK IGYPITLFVEKERDKEVSDDEAEEKEDKEE SDDEAEEKEDKEEEKEKEEKESEDKPEIED K E V E K E 1 0 0 3 0 0 8 0 0 0 0 3 0 0 0 1 0 0 0 1 0 0 17 2 2036.8546 K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322 K9JA46 229 245 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 3 0.0036619 33.947 1 0.34795 0.40907 NaN 1 Median 0.34795 0.40907 NaN 1 0 Median NaN NaN NaN 0 0 Median 2426000 1828900 597050 2426000 1828900 597050 0 0 0 3386 1155 3471 12243 18536 18536 1 EVSDGIIAPGYEEEALTILSK LSDVCDVPTAKIISREVSDGIIAPGYEEEA IAPGYEEEALTILSKKKNGNYCVLQMDQSY R E V S K K 2 0 0 1 0 0 4 2 0 3 2 1 0 0 1 2 1 0 1 1 0 0 21 0 2233.1366 B4DP06;V9HWH7;B2R7P8;P31939 B4DP06 277 297 HEL-S-70p;ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 0.0018909 57.53 2 0.53212 0.6521 NaN 1 Median 0.53212 0.6521 NaN 1 0 Median NaN NaN NaN 0 0 Median 4777700 3480300 1297500 4777700 3480300 1297500 0 0 0 3387 707 3472 12244;12245 18537;18538;18539 18539 3 EVSGLLK ______________________________ GLVRRPLREVSGLLKRRFHWTAPAALQVTV R E V L K R 0 0 0 0 0 0 1 1 0 0 2 1 0 0 0 1 0 0 0 1 0 0 7 0 744.43815 F8WF02;P11177 F8WF02 14 20 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 2 0.041035 54.525 1 0.86146 1.065 NaN 1 Median 0.86146 1.065 NaN 1 0 Median NaN NaN NaN 0 0 Median 28359000 14722000 13636000 28359000 14722000 13636000 0 0 0 3388 1074 3473 12246 18540 18540 1 EVSIEDTGVDVDPEK GENMEKSCASKEEVKEVSIEDTGVDVDPEK EVSIEDTGVDVDPEKLEMESKLHRNLLFQD K E V E K L 0 0 0 3 0 0 3 1 0 1 0 1 0 0 1 1 1 0 0 3 0 0 15 0 1630.7574 B2RMQ4;Q8WWK9 B2RMQ4 531 545 CKAP2 Cytoskeleton-associated protein 2 yes no 2 4.0716E-15 153.34 4 2 1.0992 1.3932 25.684 5 Median 1.1209 1.4095 8.3296 3 0 Median 0.62411 0.93494 6.3915 2 0 Median 51526000 30021000 21505000 26091000 14114000 11977000 25435000 15907000 9527800 3389 745 3474 12247;12248;12249;12250;12251;12252 18541;18542;18543;18544;18545;18546;18547;18548;18549;18550;18551 18545 11 EVSQVDTICECLLEHEEQVLR YEIPSNLTPADVFFREVSQVDTICECLLEH TICECLLEHEEQVLRDAPMDSIEWAEVVIN R E V L R D 0 1 0 1 2 2 5 0 1 1 3 0 0 0 0 1 1 0 0 3 0 0 21 0 2585.2102 Q8WUM0;B4E206;A0A024R3R6;B4E3T7 Q8WUM0 692 712 NUP133 Nuclear pore complex protein Nup133 yes no 3 0.00021187 40.384 1 0.71462 0.96921 NaN 1 Median 0.71462 0.96921 NaN 1 0 Median NaN NaN NaN 0 0 Median 5400000 3464300 1935700 5400000 3464300 1935700 0 0 0 3390 1666 3475 12253 18552 18552 1 EVSSADNVSVYPSVSEEPVENK EEIGEPEEVALTESREVSSADNVSVYPSVS VSVYPSVSEEPVENKERKGDNLQPVTLILS R E V N K E 1 0 2 1 0 0 4 0 0 0 0 1 0 0 2 5 0 0 1 5 0 0 22 0 2364.0969 Q5VWN6 Q5VWN6 1336 1357 FAM208B Protein FAM208B yes yes 2 0.047147 87.083 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3391 1579 3476 12254 18553 18553 1 EVSSSFDHVIK ESDKGEELGPGNVQKEVSSSFDHVIKETTR NVQKEVSSSFDHVIKETTREMIARSAATLI K E V I K E 0 0 0 1 0 0 1 0 1 1 0 1 0 1 0 3 0 0 0 2 0 0 11 0 1246.6194 Q9Y6C9;Q53G34;E9PIE4 Q9Y6C9 112 122 MTCH2 Mitochondrial carrier homolog 2 yes no 2 0.01245 46.457 1 1 1.2624 1.7406 131.82 2 Median 0.54203 0.68528 NaN 1 0 Median 2.94 4.4209 NaN 1 0 Median 19672000 10087000 9585600 11829000 7984100 3845200 7843100 2102700 5740400 3392 1833 3477 12255;12256 18554;18555;18556 18554 3 EVSTAPAGTDMPAAK ______________________________ EVSTAPAGTDMPAAKKQKLSSDENSNPDLS R E V A K K 4 0 0 1 0 0 1 1 0 0 0 1 1 0 2 1 2 0 0 1 0 0 15 0 1444.6868 O75530;E9PJK2;H0YEL4 O75530 5 19 EED Polycomb protein EED yes no 2 0.00091885 44.543 1 0.78109 1.1295 NaN 1 Median NaN NaN NaN 0 0 Median 0.78109 1.1295 NaN 1 0 Median 6524700 3954000 2570700 0 0 0 6524700 3954000 2570700 3393 1203 3478 12257 18557 18557 438 1 EVSTYIK TEPPYSQKRYEEIVKEVSTYIKKIGYNPDT KRYEEIVKEVSTYIKKIGYNPDTVAFVPIS K E V I K K 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 1 1 0 1 1 0 0 7 0 838.44363 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;P68104;A8K9C4;Q5VTE0;Q96RE1;A0A087WVQ9;Q53GA1;Q53G85;B4DV42;Q8IUB0;Q504Z0;Q53HR1;A0A087WV01;Q9H2I7;Q53G89;Q6P4C9;B4E2C5;Q16577;A9X7H1 Q6IPT9 173 179 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1 Elongation factor 1-alpha;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 2 0.016205 83.377 1 0.38345 0.50681 NaN 1 Median 0.38345 0.50681 NaN 1 0 Median NaN NaN NaN 0 0 Median 505960000 369130000 136830000 505960000 369130000 136830000 0 0 0 3394 1421 3479 12258 18558 18558 1 EVSTYIKK TEPPYSQKRYEEIVKEVSTYIKKIGYNPDT RYEEIVKEVSTYIKKIGYNPDTVAFVPISG K E V K K I 0 0 0 0 0 0 1 0 0 1 0 2 0 0 0 1 1 0 1 1 0 0 8 1 966.5386 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;P68104;A8K9C4;Q5VTE0;Q96RE1;A0A087WVQ9;Q53GA1;Q53G85;B4DV42;Q8IUB0;Q504Z0;Q53HR1;A0A087WV01;Q9H2I7;Q53G89;Q6P4C9;B4E2C5;Q16577;A9X7H1 Q6IPT9 173 180 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1 Elongation factor 1-alpha;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 2 0.0012448 113.89 3 2 0.41597 0.51261 9.973 3 Median 0.41597 0.51261 9.973 3 0 Median NaN NaN NaN 0 0 Median 147730000 82786000 64948000 120770000 82786000 37985000 26964000 0 26964000 3395 1421 3480 12259;12260;12261;12262;12263 18559;18560;18561;18562;18563;18564;18565 18565 7 EVTEPLNLNPAK RRHQFRWSEIQKGVREVTEPLNLNPAKRPR GVREVTEPLNLNPAKRPRRQDWDGELYENG R E V A K R 1 0 2 0 0 0 2 0 0 0 2 1 0 0 2 0 1 0 0 1 0 0 12 0 1323.7034 Q53GF0;Q8NFW8;F5GYM0 Q53GF0 189 200 CMAS N-acylneuraminate cytidylyltransferase yes no 2 0.009982 57.55 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3396 1542 3481 12264 18566 18566 1 EVTFSFIPR NILKVCPDLLNKYFKEVTFSFIPRAKSTWL LNKYFKEVTFSFIPRAKSTWLNNIKLLNKI K E V P R A 0 1 0 0 0 0 1 0 0 1 0 0 0 2 1 1 1 0 0 1 0 0 9 0 1094.576 O60287 O60287 377 385 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.013385 86.833 2 0.65975 0.92923 4.5881 2 Median 0.65975 0.92923 4.5881 2 0 Median NaN NaN NaN 0 0 Median 6470400 3966100 2504300 6470400 3966100 2504300 0 0 0 3397 1190 3482 12265;12266 18567;18568;18569 18567 3 EVTFVPGLYK QQMWVYDEDVGINYREVTFVPGLYKIFDEI GINYREVTFVPGLYKIFDEILVNAADNKQR R E V Y K I 0 0 0 0 0 0 1 1 0 0 1 1 0 1 1 0 1 0 1 2 0 0 10 0 1151.6227 P11388;J3KTB7;Q71UH4;Q02880;B4DKD0;E9PCY5 P11388 74 83 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2 1.4676E-06 139.97 6 2 0.88184 1.1977 5.4486 6 Median 0.89104 1.1776 2.3843 4 0 Median 0.81976 1.291 3.7531 2 0 Median 2102200000 1138700000 963460000 1405100000 745090000 659990000 697090000 393630000 303460000 3398 1256;1437 3483 12267;12268;12269;12270;12271;12272;12273;12274 18570;18571;18572;18573;18574;18575;18576;18577;18578;18579;18580;18581;18582;18583;18584;18585;18586;18587;18588 18571 19 EVTINQSLLAPLR AVRSAYGGPVGAGIREVTINQSLLAPLRLD IREVTINQSLLAPLRLDADPSLQRVRQEES R E V L R L 1 1 1 0 0 1 1 0 0 1 3 0 0 0 1 1 1 0 0 1 0 0 13 0 1452.83 CON__P08729;CON__Q3KNV1;P08729 CON__Q3KNV1 65 77 KRT7 Keratin, type II cytoskeletal 7 no no 2 5.1077E-17 145.89 4 2 0.35357 0.48134 58.914 6 Median 0.34091 0.46538 4.5578 4 0 Median 0.9375 1.4562 2.1032 2 0 Median 202920000 139960000 62956000 151360000 112720000 38634000 51560000 27238000 24323000 + 3399 968;957 3484 12275;12276;12277;12278;12279;12280 18589;18590;18591;18592;18593;18594;18595;18596;18597;18598;18599 18599 11 EVTINQSLLAPLRLDADPSLQR AVRSAYGGPVGAGIREVTINQSLLAPLRLD LLAPLRLDADPSLQRVRQEESEQIKTLNNK R E V Q R V 2 2 1 2 0 2 1 0 0 1 5 0 0 0 2 2 1 0 0 1 0 0 22 1 2448.3336 CON__P08729;CON__Q3KNV1;P08729 CON__Q3KNV1 65 86 KRT7 Keratin, type II cytoskeletal 7 no no 3 4.0289E-18 124.45 4 1 0.35169 0.47902 56.751 4 Median 0.33133 0.4571 5.9535 3 0 Median 0.95506 1.453 NaN 1 0 Median 108880000 80654000 28222000 92750000 72358000 20392000 16126000 8295400 7830300 + 3400 968;957 3485 12281;12282;12283;12284;12285 18600;18601;18602;18603;18604;18605;18606;18607;18608 18607 9 EVTLALLSLPETHLVTQQPTK ALQELHPYMEGAQLREVTLALLSLPETHLV LSLPETHLVTQQPTKSPGKERHLNALGKTL R E V T K S 1 0 0 0 0 2 2 0 1 0 5 1 0 0 2 1 4 0 0 2 0 0 21 0 2317.2893 O60287 O60287 1122 1142 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 3 9.1659E-48 142.98 3 1 0.67792 0.90453 6.3777 4 Median 0.7004 0.87084 6.7456 3 0 Median 0.60071 0.93954 NaN 1 0 Median 65907000 39019000 26888000 39381000 22943000 16438000 26526000 16076000 10450000 3401 1190 3486 12286;12287;12288;12289 18609;18610;18611;18612;18613;18614 18610 6 EVTPESGPPK IQWSEEETEDEEEEKEVTPESGPPKVEEAD EEEEKEVTPESGPPKVEEADGGLQINVDEE K E V P K V 0 0 0 0 0 0 2 1 0 0 0 1 0 0 3 1 1 0 0 1 0 0 10 0 1039.5186 P46087;F5H5X6;F5GYR3 P46087 193 202 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2 1.2236E-06 114.89 2 2 0.7898 0.97686 1.0507 2 Median 0.7898 0.97686 1.0507 2 0 Median NaN NaN NaN 0 0 Median 33808000 15469000 18339000 28013000 15469000 12543000 5795400 0 5795400 3402 1343 3487 12290;12291;12292;12293 18615;18616;18617;18618;18619 18619 5 EVTQATQPEAIPQGTNITEEK QVSAADGKPGRQSRKEVTQATQPEAIPQGT QPEAIPQGTNITEEKPGRKRAEAKGNRSWS K E V E K P 2 0 1 0 0 3 4 1 0 2 0 1 0 0 2 0 4 0 0 1 0 0 21 0 2283.123 H7C2V9;A6NE70;B3KTC2;H7BYY2;E3UVQ2;H9A532;Q6W2J9 H7C2V9 106 126 BCOR;BCOR-RARA BCL-6 corepressor yes no 2 5.7923E-15 139.48 1 1 0.72651 1.0123 NaN 1 Median NaN NaN NaN 0 0 Median 0.72651 1.0123 NaN 1 0 Median 5114000 3291300 1822700 529340 529340 0 4584600 2762000 1822700 3403 562 3488 12294;12295 18620;18621 18620 2 EVVAEVVK TWKQEYVDYSESAKKEVVAEVVKAPQVVAE YSESAKKEVVAEVVKAPQVVAEAAKTAKRK K E V V K A 1 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 4 0 0 8 0 871.50148 O60832 O60832 426 433 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2 0.0043498 97.033 3 2 0.75481 1.0144 7.9159 5 Median 0.7932 1.0144 4.2693 3 0 Median 0.66617 1.0669 12.588 2 0 Median 269110000 164110000 104990000 158680000 92143000 66534000 110430000 71971000 38460000 3404 1193 3489 12296;12297;12298;12299;12300 18622;18623;18624;18625;18626;18627;18628 18623 7 EVVDEGLIPGDGLGAAGLDSSFYGHLK LERKCAMLEYTTGSREVVDEGLIPGDGLGA LGAAGLDSSFYGHLKRNWIWTSYIINQAKK R E V L K R 2 0 0 3 0 0 2 6 1 1 4 1 0 1 1 2 0 0 1 2 0 0 27 0 2715.3392 Q6AHZ7;Q12789 Q6AHZ7 1102 1128 DKFZp686A111;GTF3C1 General transcription factor 3C polypeptide 1 yes no 3 9.2301E-16 102.27 5 1 0.72131 0.91384 47.696 4 Median 0.70487 0.89432 7.8155 3 0 Median 1.4276 2.2521 NaN 1 0 Median 101080000 51020000 50062000 59951000 35064000 24887000 41131000 15956000 25175000 3405 1457 3490 12301;12302;12303;12304;12305;12306 18629;18630;18631;18632;18633;18634;18635;18636 18634 8 EVVECQSTSTVGGQSVK PSNIIDHCEKLASEKEVVECQSTSTVGGQS VECQSTSTVGGQSVKKVDLETLKEDSEFTK K E V V K K 0 0 0 0 1 2 2 2 0 0 0 1 0 0 0 3 2 0 0 4 0 0 17 0 1793.8465 Q96T23;H0YER1;H0YCN2 Q96T23 646 662 RSF1 Remodeling and spacing factor 1 yes no 2 6.2686E-34 185.57 3 2 0.75179 0.95553 28.59 4 Median 0.61925 0.77038 26.016 3 0 Median 0.93274 1.2878 NaN 1 0 Median 26833000 16551000 10281000 19399000 11246000 8153000 7433400 5305100 2128400 3406 1702 3491 12307;12308;12309;12310;12311 18637;18638;18639;18640;18641;18642;18643;18644 18637 8 EVVEQGLLK LRLALKEDKFPRFWKEVVEQGLLKMQFWPA FPRFWKEVVEQGLLKMQFWPASYLCFRLLG K E V L K M 0 0 0 0 0 1 2 1 0 0 2 1 0 0 0 0 0 0 0 2 0 0 9 0 1013.5757 Q9BQG0;I3L1L3;B4DZZ1 Q9BQG0 287 295 MYBBP1A Myb-binding protein 1A yes no 2 0.0019388 101.6 4 2 0.63318 0.8104 1.5975 4 Median 0.63318 0.8104 1.5975 4 0 Median NaN NaN NaN 0 0 Median 54643000 26892000 27751000 46344000 26892000 19453000 8298300 0 8298300 3407 1708 3492 12312;12313;12314;12315;12316;12317 18645;18646;18647;18648;18649;18650;18651;18652 18650 8 EVVHTVSLHEIDVINSR TKFVQCPDGELQKRKEVVHTVSLHEIDVIN VHTVSLHEIDVINSRTQGFLALFSGDTGEI K E V S R T 0 1 1 1 0 0 2 0 2 2 1 0 0 0 0 2 1 0 0 4 0 0 17 0 1946.0221 Q9Y230;B3KNL2;M0R0Y3 Q9Y230 237 253 RUVBL2 RuvB-like 2 yes no 3;4 8.2383E-14 102.08 4 2 0.6319 0.84499 27.874 6 Median 0.59467 0.7959 6.5455 4 0 Median 0.91297 1.3623 0.88029 2 0 Median 127610000 78543000 49068000 94301000 61051000 33250000 33309000 17492000 15818000 3408 1801 3493 12318;12319;12320;12321;12322;12323 18653;18654;18655;18656;18657;18658;18659 18656 7 EVVTEIRDK HAALQDIGKNIYTIREVVTEIRDKATRRRL NIYTIREVVTEIRDKATRRRLAVLPYELRF R E V D K A 0 1 0 1 0 0 2 0 0 1 0 1 0 0 0 0 1 0 0 2 0 0 9 1 1087.5873 B2RAR2;Q9ULX3;H3BUR4 B2RAR2 32 40 NOB1 RNA-binding protein NOB1 yes no 2 0.041392 90.601 1 0.36953 0.49579 NaN 1 Median 0.36953 0.49579 NaN 1 0 Median NaN NaN NaN 0 0 Median 3432300 2665000 767290 3432300 2665000 767290 0 0 0 3409 726 3494 12324 18660 18660 1 EVVVSVPQR VTVYYEVAGHLRTYKEVVVSVPQRIMARHL HLRTYKEVVVSVPQRIMARHLHPIQTSFQE K E V Q R I 0 1 0 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 0 4 0 0 9 0 1011.5713 Q8TEM1 Q8TEM1 1548 1556 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.01104 61.962 1 0.68812 0.90066 NaN 1 Median 0.68812 0.90066 NaN 1 0 Median NaN NaN NaN 0 0 Median 7906200 4856300 3049900 7906200 4856300 3049900 0 0 0 3410 1661 3495 12325 18661 18661 1 EVVVYLDDNQKPPVGEGLNR LTNLNLDDIVHIRRKEVVVYLDDNQKPPVG LDDNQKPPVGEGLNRKAEVTLDGVWPTDKT K E V N R K 0 1 2 2 0 1 2 2 0 0 2 1 0 0 2 0 0 0 1 4 0 0 20 1 2240.1437 P52948;A0A024RCC4;B4DWF8;A8KA17 P52948 798 817 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 3 0.0019334 56.906 1 0.40431 0.54244 NaN 1 Median 0.40431 0.54244 NaN 1 0 Median NaN NaN NaN 0 0 Median 3483500 1821900 1661600 3483500 1821900 1661600 0 0 0 3411 1367 3496 12326 18662 18662 1 EVYMTPLR TLTTTTFQNEDEKNKEVYMTPLRGVKATQA NEDEKNKEVYMTPLRGVKATQASKSTQLKT K E V L R G 0 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 0 1 1 0 0 8 0 1007.511 Q9BPX3;Q6NUR1 Q9BPX3 927 934 NCAPG Condensin complex subunit 3 yes no 2 0.0030329 89.55 2 0.47413 0.75814 3.319 2 Median NaN NaN NaN 0 0 Median 0.47413 0.75814 3.319 2 0 Median 82396000 55543000 26853000 0 0 0 82396000 55543000 26853000 3412 1706 3497 12327;12328 18663;18664;18665;18666 18664 766 4 EWCDAFL GANAKQSRDCFGCLREWCDAFL________ RDCFGCLREWCDAFL_______________ R E W F L - 1 0 0 1 1 0 1 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 7 0 939.37965 A0A024R5H0;O75531;B2R4V4 A0A024R5H0 83 89 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 1 0.033071 105.42 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3268200 0 0 3268200 0 0 0 0 0 3413 143 3498 12329 18667 18667 1 EWLLGMLGAESAK RDFFELRLKYYGLRKEWLLGMLGAESAKLN RKEWLLGMLGAESAKLNNQARFILEKIDGK K E W A K L 2 0 0 0 0 0 2 2 0 0 3 1 1 0 0 1 0 1 0 0 0 0 13 0 1403.7119 P11388 P11388 1035 1047 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.00022464 71.555 4 0.60429 0.9347 8.8343 4 Median NaN NaN NaN 0 0 Median 0.60429 0.9347 8.8343 4 0 Median 141060000 86859000 54199000 0 0 0 141060000 86859000 54199000 3414 1256 3499;3500 12330;12331;12332;12333 18668;18669;18670;18671;18672;18673;18674;18675 18674 508 8 EWLNSCDLK TMINAIPVASLDPIKEWLNSCDLKYTEGVQ SLDPIKEWLNSCDLKYTEGVQSLNWTKIMK K E W L K Y 0 0 1 1 1 0 1 0 0 0 2 1 0 0 0 1 0 1 0 0 0 0 9 0 1163.5281 Q9Y5B9 Q9Y5B9 884 892 SUPT16H FACT complex subunit SPT16 yes yes 2 0.0050878 73.26 1 0.52457 0.77514 NaN 1 Median NaN NaN NaN 0 0 Median 0.52457 0.77514 NaN 1 0 Median 5982000 3745400 2236600 0 0 0 5982000 3745400 2236600 3415 1829 3501 12334 18676 18676 1 EWLTNFMEDR AISLAFSKKQIDDRKEWLTNFMEDRRQRKL IDDRKEWLTNFMEDRRQRKLLGLPEDYLYG K E W D R R 0 1 1 1 0 0 2 0 0 0 1 0 1 1 0 0 1 1 0 0 0 0 10 0 1339.5867 P11388;Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80 P11388 663 672 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2 3.403E-05 96.331 2 0.53382 0.85206 0.37526 2 Median NaN NaN NaN 0 0 Median 0.53382 0.85206 0.37526 2 0 Median 80096000 52371000 27725000 0 0 0 80096000 52371000 27725000 3416 1256;1437 3502 12335;12336 18677;18678;18679 18677 509 3 EWLTNFMEDRR AISLAFSKKQIDDRKEWLTNFMEDRRQRKL DDRKEWLTNFMEDRRQRKLLGLPEDYLYGQ K E W R R Q 0 2 1 1 0 0 2 0 0 0 1 0 1 1 0 0 1 1 0 0 0 0 11 1 1495.6878 P11388;Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80 P11388 663 673 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 3 0.038661 22.474 1 1.0155 1.3355 NaN 1 Median NaN NaN NaN 0 0 Median 1.0155 1.3355 NaN 1 0 Median 3716800 2361000 1355800 0 0 0 3716800 2361000 1355800 3417 1256;1437 3503 12337 18680 18680 1 EWSGLLEELAR IGGDGSLTGANLFRKEWSGLLEELARNGQI LFRKEWSGLLEELARNGQIDKEAVQKYAYL K E W A R N 1 1 0 0 0 0 3 1 0 0 3 0 0 0 0 1 0 1 0 0 0 0 11 0 1301.6616 Q01813;V9GYV7;Q5VSR5 Q01813 140 150 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2 0.047805 42.001 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2788000 0 2788000 0 0 0 2788000 0 2788000 3418 1434 3504 12338 18681 18681 1 EWYGYHFPELVK DQLDKDINTFSMRVREWYGYHFPELVKIIN RVREWYGYHFPELVKIINDNATYCRLAQFI R E W V K I 0 0 0 0 0 0 2 1 1 0 1 1 0 1 1 0 0 1 2 1 0 0 12 0 1566.7507 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 191 202 NOP56 Nucleolar protein 56 yes no 3 0.0046655 33.685 1 0.55326 0.83939 NaN 1 Median NaN NaN NaN 0 0 Median 0.55326 0.83939 NaN 1 0 Median 9724900 6749500 2975400 0 0 0 9724900 6749500 2975400 3419 647 3505 12339 18682 18682 1 EYAVNEVVAGIK EYANCKKSQGNVDNKEYAVNEVVAGIKEYF DNKEYAVNEVVAGIKEYFNVMLGTQLLYKF K E Y I K E 2 0 1 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 1 3 0 0 12 0 1290.682 B4DXQ8;B3KWX6;Q53EY5;B3KX14;Q15014;H0YM21;Q0VAE4;A0A0A0MT59;H0YMJ0;H0YLJ3;A5D8W6;B3KTM8;Q9UBU8 B4DXQ8 148 159 MORF4L2;MORF4L1 Mortality factor 4-like protein 2;Mortality factor 4-like protein 1 yes no 2 0.031637 36.318 1 0.92837 1.1334 NaN 1 Median 0.92837 1.1334 NaN 1 0 Median NaN NaN NaN 0 0 Median 3686100 2141000 1545200 3686100 2141000 1545200 0 0 0 3420 785 3506 12340 18683 18683 1 EYEAAVEQLK MQEQTLQLEQQSKLKEYEAAVEQLKSEQIR QSKLKEYEAAVEQLKSEQIRAQAEERRKTL K E Y L K S 2 0 0 0 0 1 3 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 10 0 1178.5819 Q5T9A4;Q96T67 Q5T9A4 95 104 ATAD3B ATPase family AAA domain-containing protein 3B no no 2 0.0072763 56.432 1 0.46273 0.58365 NaN 1 Median 0.46273 0.58365 NaN 1 0 Median NaN NaN NaN 0 0 Median 7469900 4636000 2833900 7469900 4636000 2833900 0 0 0 3421 1573 3507 12341 18684 18684 1 EYEATLEECCAK RHPEYAVSVLLRLAKEYEATLEECCAKDDP LAKEYEATLEECCAKDDPHACYSTVFDKLK K E Y A K D 2 0 0 0 2 0 4 0 0 0 1 1 0 0 0 0 1 0 1 0 0 0 12 0 1501.6065 CON__P02769 CON__P02769 375 386 yes yes 2 1.7521E-10 155.42 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1236600 1236600 0 1236600 1236600 0 0 0 0 + 3422 952 3508 12342 18685 18685 1 EYFADMKR KYYKGLGTSTSKEAKEYFADMKRHRIQFKY STSKEAKEYFADMKRHRIQFKYSGPEDDAA K E Y K R H 1 1 0 1 0 0 1 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 8 1 1058.4855 P11388 P11388 626 633 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.027018 78.324 1 0.48781 0.81091 NaN 1 Median NaN NaN NaN 0 0 Median 0.48781 0.81091 NaN 1 0 Median 33746000 21922000 11824000 0 0 0 33746000 21922000 11824000 3423 1256 3509 12343 18686 18686 1 EYGFCIMDNHK EEKLKIKEENEKLLKEYGFCIMDNHKERIA KLLKEYGFCIMDNHKERIANFKIEPPGLFR K E Y H K E 0 0 1 1 1 0 1 1 1 1 0 1 1 1 0 0 0 0 1 0 0 0 11 0 1412.5853 P11387;B9EG90 P11387 337 347 TOP1 DNA topoisomerase 1 yes no 2;3 0.00051544 72.928 2 1 0.82515 1.041 7.3034 3 Median 0.82951 1.0442 0.43259 2 0 Median 0.61964 0.92022 NaN 1 0 Median 28378000 15531000 12847000 17364000 9110100 8254200 11014000 6421200 4592600 3424 1255 3510;3511 12344;12345;12346 18687;18688;18689 18687 499 3 EYGMIYLGK KEVCFTIENKTPQGREYGMIYLGKDTNGEN KTPQGREYGMIYLGKDTNGENIAESLVAEG R E Y G K D 0 0 0 0 0 0 1 2 0 1 1 1 1 0 0 0 0 0 2 0 0 0 9 0 1072.5263 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B3KU67;I6TRR8 A0A140VK49 108 116 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.015202 60.76 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1160000 0 1160000 0 0 0 1160000 0 1160000 3425 508 3512 12347 18690 18690 179 1 EYGQIESVR LPVTCNKKKLKSFFKEYGQIESVRFRSLIP LKSFFKEYGQIESVRFRSLIPAEGTLSKKL K E Y V R F 0 1 0 0 0 1 2 1 0 1 0 0 0 0 0 1 0 0 1 1 0 0 9 0 1079.5247 P42696 P42696 207 215 RBM34 RNA-binding protein 34 yes yes 2 0.0011396 103.87 4 2 0.93872 1.2535 9.3577 6 Median 0.99226 1.342 7.9345 4 0 Median 0.77619 1.1738 3.6551 2 0 Median 84743000 42797000 41946000 49507000 23320000 26186000 35236000 19477000 15759000 3426 1339 3513 12348;12349;12350;12351;12352;12353 18691;18692;18693;18694;18695;18696;18697;18698;18699 18696 9 EYGSCSHHYQQLLQSLEQGAQEESR DAGGFGPEDRLMAEREYGSCSHHYQQLLQS QLLQSLEQGAQEESRCQRCISELKDIRLQL R E Y S R C 1 1 0 0 1 5 4 2 2 0 3 0 0 0 0 4 0 0 2 0 0 0 25 0 2963.3104 Q15149 Q15149 1094 1118 PLEC Plectin yes yes 4 0.0058139 26.415 1 1.0269 1.3793 NaN 1 Median 1.0269 1.3793 NaN 1 0 Median NaN NaN NaN 0 0 Median 15766000 7762000 8003800 15766000 7762000 8003800 0 0 0 3427 1507 3514 12354 18700 18700 1 EYIPTVFDNYSAQSAVDGR KTCLLICYTTNAFPKEYIPTVFDNYSAQSA TVFDNYSAQSAVDGRTVNLNLWDTAGQEEY K E Y G R T 2 1 1 2 0 1 1 1 0 1 0 0 0 1 1 2 1 0 2 2 0 0 19 0 2130.9858 Q6ICQ8;P84095 Q6ICQ8 31 49 ARHG;RHOG Rho-related GTP-binding protein RhoG yes no 2 7.2418E-11 123.38 4 0.59669 0.80493 37.819 4 Median 0.59669 0.80493 37.819 4 0 Median NaN NaN NaN 0 0 Median 11908000 8294900 3613200 11908000 8294900 3613200 0 0 0 3428 1432 3515 12355;12356;12357;12358 18701;18702;18703;18704;18705;18706;18707 18702 7 EYIVGLSVETERK KQEIAEAQQLITICREYIVGLSVETERKKL CREYIVGLSVETERKKLPKETLEQQKRICE R E Y R K K 0 1 0 0 0 0 3 1 0 1 1 1 0 0 0 1 1 0 1 2 0 0 13 1 1521.8039 P53621 P53621 1059 1071 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.0014823 86.344 3 0.61132 0.78905 NaN 1 Median 0.61132 0.78905 NaN 1 0 Median NaN NaN NaN 0 0 Median 4714500 4304700 409750 4714500 4304700 409750 0 0 0 3429 1371 3516 12359;12360;12361 18708;18709;18710 18709 3 EYLDNVQLGHILER REDQKRKGISDLVLKEYLDNVQLGHILERE KEYLDNVQLGHILEREGGWDSVQDWMDVLS K E Y E R E 0 1 1 1 0 1 2 1 1 1 3 0 0 0 0 0 0 0 1 1 0 0 14 0 1697.8737 B4DZ22;B4DL07;P28288 B4DZ22 471 484 ABCD3 ATP-binding cassette sub-family D member 3 yes no 3 9.4158E-07 82.55 1 1 0.35686 0.48551 NaN 1 Median 0.35686 0.48551 NaN 1 0 Median NaN NaN NaN 0 0 Median 15219000 6074200 9144500 9270400 6074200 3196200 5948300 0 5948300 3430 823 3517 12362;12363 18711;18712 18711 2 EYLLGSTAEEK GLTTIAAHLVKQANKEYLLGSTAEEKAIVQ QANKEYLLGSTAEEKAIVQQWLEYRVTQVD K E Y E K A 1 0 0 0 0 0 3 1 0 0 2 1 0 0 0 1 1 0 1 0 0 0 11 0 1238.603 H0YAL7;D6RBD7;C9J1V9;O43324;D6RCQ0 H0YAL7 45 55 EEF1E1;EEF1E1-BLOC1S5 Eukaryotic translation elongation factor 1 epsilon-1 yes no 2 0.0052822 54.982 1 0.63038 0.79614 NaN 1 Median 0.63038 0.79614 NaN 1 0 Median NaN NaN NaN 0 0 Median 8620200 3886000 4734200 8620200 3886000 4734200 0 0 0 3431 934 3518 12364 18713 18713 1 EYLSEEVQAVHK NPTIVNFPITNVDLREYLSEEVQAVHKNTT DLREYLSEEVQAVHKNTTYDLIANIVHDGK R E Y H K N 1 0 0 0 0 1 3 0 1 0 1 1 0 0 0 1 0 0 1 2 0 0 12 0 1430.7042 B9A018;Q53GS9;B7Z7L9;A0A087X1B2;B3KPG7;B3KMG1 B9A018 482 493 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 2 1.5336E-07 148.94 3 0.96596 1.2716 NaN 1 Median 0.96596 1.2716 NaN 1 0 Median NaN NaN NaN 0 0 Median 4432900 3139600 1293400 4432900 3139600 1293400 0 0 0 3432 926 3519 12365;12366;12367 18714;18715;18716 18714 3 EYLTGFHK RRPRLVLSFDEEKRREYLTGFHKRKVERKK FDEEKRREYLTGFHKRKVERKKAAIEEIKQ R E Y H K R 0 0 0 0 0 0 1 1 1 0 1 1 0 1 0 0 1 0 1 0 0 0 8 0 993.49198 B4DGP7;V9GYY5;B3KQ09;A0A024R1M6;Q9UGY1 B4DGP7 29 36 MGC3731;NOL12 Nucleolar protein 12 yes no 2 0.031283 50.898 1 1 0.88265 1.2247 10.349 2 Median 1.0372 1.3177 NaN 1 0 Median 0.75109 1.1383 NaN 1 0 Median 22075000 11613000 10463000 12660000 5764400 6895900 9415100 5848400 3566600 3433 60 3520 12368;12369 18717;18718;18719 18718 3 EYLTTLGQR EAVILLQEIGVLDQREYLTTLGQRLAHIST GVLDQREYLTTLGQRLAHISTDPRLAKAIV R E Y Q R L 0 1 0 0 0 1 1 1 0 0 2 0 0 0 0 0 2 0 1 0 0 0 9 0 1079.5611 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 837 845 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.020516 55.531 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3730800 3730800 0 3730800 3730800 0 0 0 0 3434 93 3521 12370 18720 18720 1 EYNEFAEVFLK ARLFERYGSPGNVSKEYNEFAEVFLKAFAV NVSKEYNEFAEVFLKAFAVGVQQVLLKVLY K E Y L K A 1 0 1 0 0 0 3 0 0 0 1 1 0 2 0 0 0 0 1 1 0 0 11 0 1387.666 O95373 O95373 284 294 IPO7 Importin-7 yes yes 2 0.012833 46.001 1 0.50833 0.61958 NaN 1 Median 0.50833 0.61958 NaN 1 0 Median NaN NaN NaN 0 0 Median 3274100 2052000 1222100 3274100 2052000 1222100 0 0 0 3435 1219 3522 12371 18721 18721 1 EYPFILDAFQR EDYLPLKPRVGKAAKEYPFILDAFQREAIQ KAAKEYPFILDAFQREAIQCVDNNQSVLVS K E Y Q R E 1 1 0 1 0 1 1 0 0 1 1 0 0 2 1 0 0 0 1 0 0 0 11 0 1397.698 P42285;A8K6I4;B4E3M6 P42285 135 145 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 0.00023901 82.749 3 2 0.66576 0.9006 28.543 5 Median 0.70876 0.91792 6.6863 3 0 Plateau 0.3962 0.56505 0.73385 2 0 Median 44103000 28230000 15873000 27649000 16663000 10985000 16455000 11567000 4888100 3436 1336 3523 12372;12373;12374;12375;12376 18722;18723;18724;18725;18726;18727;18728;18729;18730 18725 9 EYQDAFLFNELK YSLFLDESRSTQYMKEYQDAFLFNELKGET YMKEYQDAFLFNELKGETMDTS________ K E Y L K G 1 0 1 1 0 1 2 0 0 0 2 1 0 2 0 0 0 0 1 0 0 0 12 0 1515.7246 Q9Y230;B3KNL2 Q9Y230 445 456 RUVBL2 RuvB-like 2 yes no 2 5.8299E-16 167.93 4 2 0.72765 0.89864 28.282 6 Median 0.60995 0.75041 17.866 4 0 Median 0.86744 1.3147 3.2052 2 0 Median 147680000 87492000 60184000 119560000 72863000 46702000 28111000 14629000 13482000 3437 1801 3524 12377;12378;12379;12380;12381;12382 18731;18732;18733;18734;18735;18736;18737;18738;18739 18736 9 EYQDLLNVK DEIQNMKEEMARHLREYQDLLNVKMALDIE MARHLREYQDLLNVKMALDIEIATYRKLLE R E Y V K M 0 0 1 1 0 1 1 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 9 0 1120.5764 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;B0YJC5;Q9H319;Q53SB5;Q45VM8;Q45VM7;Q45VM6;L7RDA5;A5Z217;P17661;Q5RLN2;B4DE66;Q59EM6;B4DR43;Q8TCR7;B3KXJ0;B3KQI5;E7EMV2;B4DJT7;E7ESP9;A5YM63;Q16352;P07196;P07197 V9HWE1 382 390 HEL113;VIM;tmp_locus_29;DES;DKFZp761K0922;NEFM;INA;NEFL Vimentin;Desmin;Alpha-internexin;Neurofilament light polypeptide;Neurofilament medium polypeptide no no 1;2 0.0001558 139.31 6 2 0.71424 0.91792 35.162 4 Median 0.69939 0.90489 1.7028 3 0 Median 1.168 1.8436 NaN 1 0 Median 429580000 269900000 159680000 358180000 247980000 110200000 71400000 21919000 49480000 3438 1245 3525 12383;12384;12385;12386;12387;12388;12389;12390 18740;18741;18742;18743;18744;18745;18746;18747;18748;18749;18750;18751 18740 12 EYQELMNVK DALQKAKQDLARLLKEYQELMNVKLALDVE LARLLKEYQELMNVKLALDVEIATYRKLLE K E Y V K L 0 0 1 0 0 1 2 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 9 0 1152.5485 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;B4DRY0;Q8IWY7;CON__P04259;B4DKV4;CON__P05787;P05787;Q969I0;Q7L4M3;CON__H-INV:HIT000292931 B4DRR0 418 426 KRT6A;KRT6C;KRT8 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 8 no no 2 0.0018643 84.743 2 4 0.94757 1.3474 14.909 4 Median NaN NaN NaN 0 0 Median 0.94757 1.3474 14.909 4 0 Median 40705000 21931000 18774000 4087000 4087000 0 36618000 17844000 18774000 + 3439 459;953;955 3526;3527 12391;12392;12393;12394;12395;12396 18752;18753;18754;18755;18756;18757;18758;18759;18760;18761 18757 161 10 EYQELMSVK AALQRGKQDMARQLREYQELMSVKLALDIE MARQLREYQELMSVKLALDIEIATYRKLLE R E Y V K L 0 0 0 0 0 1 2 0 0 0 1 1 1 0 0 1 0 0 1 1 0 0 9 0 1125.5376 CON__P08729;Q96GE1;Q6PIN2;CON__Q3KNV1;P08729;B3KY79 CON__Q3KNV1 374 382 KRT4;KRT7 Keratin, type II cytoskeletal 7 no no 2 0.0084354 62.107 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4189200 0 4189200 0 0 0 4189200 0 4189200 + 3440 968;957 3528 12397;12398 18762;18763;18764 18764 333 3 EYQLVVQTTTEER QGLSEAMNELDAVQREYQLVVQTTTEERRK QREYQLVVQTTTEERRKVGNNLQRLLEMVA R E Y E R R 0 1 0 0 0 2 3 0 0 0 1 0 0 0 0 0 3 0 1 2 0 0 13 0 1594.7839 A8K031;O14777 A8K031 563 575 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 3.1653E-12 155.99 4 1 0.58335 0.7888 6.8738 4 Median 0.58335 0.7888 6.8738 4 0 Median NaN NaN NaN 0 0 Median 34568000 25414000 9153600 27917000 18763000 9153600 6650800 6650800 0 3441 574 3529 12399;12400;12401;12402;12403 18765;18766;18767;18768;18769;18770;18771;18772 18767 8 EYQTQLIQR FNALFVRPHIRGAIREYQTQLIQRVKDDIE IRGAIREYQTQLIQRVKDDIESLHDKFKVQ R E Y Q R V 0 1 0 0 0 3 1 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 9 0 1177.6091 Q14204 Q14204 603 611 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.004336 75.854 1 2 1.597 2.064 3.0885 2 Median NaN NaN NaN 0 0 Median 1.597 2.064 3.0885 2 0 Median 10761000 5947900 4812600 2783600 2783600 0 7977000 3164400 4812600 3442 1483 3530 12404;12405;12406 18773;18774;18775;18776 18774 4 EYRDLTTAGAVTQCYR WLRYDSRSGTHNMYREYRDLTTAGAVTQCY YRDLTTAGAVTQCYRDMGARHRARAHSIQI R E Y Y R D 2 2 0 1 1 1 1 1 0 0 1 0 0 0 0 0 3 0 2 1 0 0 16 1 1902.8894 Q02543;M0R3D6;M0R1A7;B2R4C0;M0R0P7;M0R117;B4DM74;Q32XH3 Q02543 96 111 RPL18A 60S ribosomal protein L18a yes no 2;3 1.6605E-13 138.02 6 2 0.71082 0.97963 24.56 8 Median 0.73146 1.0001 8.5958 6 0 Median 0.45075 0.62036 4.5012 2 0 Median 342780000 200520000 142270000 328970000 191310000 137660000 13817000 9208000 4608700 3443 1436 3531 12407;12408;12409;12410;12411;12412;12413;12414 18777;18778;18779;18780;18781;18782;18783;18784;18785;18786;18787;18788;18789 18784 13 EYSSELNAPSQESDSHPR RRDQMIKGAIEVLIREYSSELNAPSQESDS SELNAPSQESDSHPRKKKKEKKEDIFRRFP R E Y P R K 1 1 1 1 0 1 3 0 1 0 1 0 0 0 2 5 0 0 1 0 0 0 18 0 2031.877 P49756;E9PQU5 P49756 217 234 RBM25 RNA-binding protein 25 yes no 3 0.015593 22.867 1 1.3612 1.7994 NaN 1 Median NaN NaN NaN 0 0 Median 1.3612 1.7994 NaN 1 0 Median 2861500 1385000 1476500 0 0 0 2861500 1385000 1476500 3444 1355 3532 12415 18790 18790 1 EYTAAVEAK LILDDVAITELSFSREYTAAVEAKQVAQQE ELSFSREYTAAVEAKQVAQQEAQRAQFLVE R E Y A K Q 3 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 9 0 980.48148 J3KPX7;Q99623;F5GY37;B4DW05;F5GWA7;F5H3X6;U3KPZ5 J3KPX7 192 200 PHB2 Prohibitin-2 yes no 2 0.018621 53.493 1 0.49155 0.61141 NaN 1 Median 0.49155 0.61141 NaN 1 0 Median NaN NaN NaN 0 0 Median 59488000 39258000 20230000 59488000 39258000 20230000 0 0 0 3445 1133 3533 12416 18791;18792 18792 2 EYTEEIER KPEVNQKLTKKALIKEYTEEIERLKRDLAA TKKALIKEYTEEIERLKRDLAAAREKNGVY K E Y E R L 0 1 0 0 0 0 4 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 8 0 1067.4771 P52732;B2RAM6 P52732 377 384 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 2 0.048447 47.082 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3446 1366 3534 12417 18793 18793 1 EYTINIHK ______________________________ INEVVTREYTINIHKRIHGVGFKKRAPRAL R E Y H K R 0 0 1 0 0 0 1 0 1 2 0 1 0 0 0 0 1 0 1 0 0 0 8 0 1016.5291 H7C2W9;C9JU56;B7Z4E3;B2R4C1;B7Z4C8;P62899;B8ZZK4 H7C2W9 12 19 RPL31 60S ribosomal protein L31 yes no 2 0.00015312 134.06 5 2 0.87085 1.157 29.126 7 Median 0.9125 1.1851 7.3662 5 0 Median 0.41723 0.65785 4.5309 2 0 Median 2508500000 1392800000 1115700000 1999200000 1030400000 968820000 509290000 362360000 146930000 3447 682 3535 12418;12419;12420;12421;12422;12423;12424 18794;18795;18796;18797;18798;18799;18800;18801;18802;18803;18804;18805;18806 18799 13 EYTINIHKR ______________________________ NEVVTREYTINIHKRIHGVGFKKRAPRALK R E Y K R I 0 1 1 0 0 0 1 0 1 2 0 1 0 0 0 0 1 0 1 0 0 0 9 1 1172.6302 H7C2W9;C9JU56;B7Z4E3;B2R4C1;B7Z4C8;P62899;B8ZZK4 H7C2W9 12 20 RPL31 60S ribosomal protein L31 yes no 2;3 2.4462E-05 127.46 5 0.93328 1.2353 11.482 5 Median 0.93328 1.2353 11.482 5 0 Median NaN NaN NaN 0 0 Median 130690000 67108000 63578000 130690000 67108000 63578000 0 0 0 3448 682 3536 12425;12426;12427;12428;12429 18807;18808;18809;18810;18811;18812;18813 18811 7 EYTLDVYR EKLKFIKGTDYQLSKEYTLDVYRLSSVVTQ TDYQLSKEYTLDVYRLSSVVTQHDSKKAGA K E Y Y R L 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 2 1 0 0 8 0 1057.508 A0A0S2Z4R1;P54577;A0A0C4DGZ5 A0A0S2Z4R1 128 135 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.023192 88.942 2 0.32881 0.44755 4.1404 2 Median 0.32881 0.44755 4.1404 2 0 Median NaN NaN NaN 0 0 Median 15100000 11335000 3765100 15100000 11335000 3765100 0 0 0 3449 468 3537 12430;12431 18814;18815 18814 2 EYTPFPPPQPESQIDK NVNKRKEPKKKTVKKEYTPFPPPQPESQID YTPFPPPQPESQIDKELASGEYFLKANQKK K E Y D K E 0 0 0 1 0 2 2 0 0 1 0 1 0 1 5 1 1 0 1 0 0 0 16 0 1871.8941 Q13601 Q13601 265 280 KRR1 KRR1 small subunit processome component homolog yes yes 2 3.2623E-10 127.52 4 1 0.92969 1.1721 3.9469 5 Median 0.93209 1.1523 3.8363 4 0 Median 0.76352 1.2004 NaN 1 0 Median 96938000 51687000 45251000 69377000 35040000 34336000 27561000 16646000 10915000 3450 1473 3538 12432;12433;12434;12435;12436 18816;18817;18818;18819;18820;18821;18822;18823 18817 8 EYVCQLCEK SVSSKKSERGVTAKKEYVCQLCEKPGSLLL GVTAKKEYVCQLCEKPGSLLLCEGPCCGAF K E Y E K P 0 0 0 0 2 1 2 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 9 0 1227.5264 O96028;H0Y9U6 O96028 667 675 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 2 0.00083172 115.49 4 1 0.86156 1.0875 11.468 5 Median 0.89584 1.1298 8.8236 4 0 Median 0.67334 0.92669 NaN 1 0 Median 40210000 21799000 18411000 35078000 18591000 16487000 5131900 3207600 1924300 3451 1228 3539 12437;12438;12439;12440;12441 18824;18825;18826;18827;18828;18829;18830 18825 7 EYVGIVR ERATRLVKSQQSAGKEYVGIVRLHNAIEGG KSQQSAGKEYVGIVRLHNAIEGGTQLSRAL K E Y V R L 0 1 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 1 2 0 0 7 0 834.45995 O60832;C9IYT0;U5UA77;H7C0M1 O60832 152 158 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 0.012558 101.47 3 1 0.58591 0.83881 64.374 4 Median 0.71121 0.95511 78.306 3 0 Median 0.48269 0.73668 NaN 1 0 Median 111980000 77470000 34511000 91562000 64022000 27540000 20419000 13448000 6971100 3452 1193 3540 12442;12443;12444;12445 18831;18832;18833;18834;18835 18834 5 EYVNSTSEESHDEDEIRPVQQQDLHR DLKEMCRDAALLCVREYVNSTSEESHDEDE DEDEIRPVQQQDLHRAIEKMKKSKDAAFQN R E Y H R A 0 2 1 3 0 3 5 0 2 1 1 0 0 0 1 3 1 0 1 2 0 0 26 1 3139.4079 Q8NBU5;B4E2J1 Q8NBU5 313 338 ATAD1 ATPase family AAA domain-containing protein 1 yes no 4 2.0079E-05 46.154 3 0.53941 0.72407 34.655 2 Median 0.53941 0.72407 34.655 2 0 Median NaN NaN NaN 0 0 Median 16786000 11309000 5476500 16786000 11309000 5476500 0 0 0 3453 1649 3541 12446;12447;12448 18836;18837;18838;18839;18840;18841 18838 6 FAAATGATPIAGR SVISSRNTGQRAVLKFAAATGATPIAGRFT LKFAAATGATPIAGRFTPGTFTNQIQAAFR K F A G R F 5 1 0 0 0 0 0 2 0 1 0 0 0 1 1 0 2 0 0 0 0 0 13 0 1202.6408 C9J9K3;A0A024R2P0;A0A0C4DG17;P08865;A0A024R7P5;Q96RS2;F8WD59 C9J9K3 90 102 RPSA;LOC388524 40S ribosomal protein SA yes no 2 1.9617E-25 196.52 4 2 0.81485 1.1245 69.168 6 Median 0.77545 1.0757 5.12 4 0 Median 2.6507 4.1424 0.51512 2 0 Median 723580000 377570000 346010000 670220000 363790000 306430000 53355000 13777000 39578000 3454 90 3542 12449;12450;12451;12452;12453;12454 18842;18843;18844;18845;18846;18847;18848;18849;18850;18851;18852;18853 18843 12 FAAFFGNVPIFHIPGR DLKLIVTSATMDAEKFAAFFGNVPIFHIPG AAFFGNVPIFHIPGRTFPVDILFSKTPQED K F A G R T 2 1 1 0 0 0 0 2 1 2 0 0 0 4 2 0 0 0 0 1 0 0 16 0 1788.9464 B4DM30;B4DET0;A8K6G9;Q92620;J3KTG2 B4DM30 365 380 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes no 3 3.0215E-07 117.93 3 0.43868 0.61438 26.391 2 Median 0.43868 0.61438 26.391 2 0 Median NaN NaN NaN 0 0 Median 8751700 6529300 2222400 8751700 6529300 2222400 0 0 0 3455 624 3543 12455;12456;12457 18854;18855;18856;18857;18858;18859 18859 6 FAAHLIAGAPSEGSGALKPELSR ELHALRRHYHPIVQRFAAHLIAGAPSEGSG APSEGSGALKPELSRRSATELFEAYSMAEM R F A S R R 5 1 0 0 0 0 2 3 1 1 3 1 0 1 2 3 0 0 0 0 0 0 23 1 2278.207 A8K905;Q8WTT2;B4DXL4 A8K905 707 729 NOC3L Nucleolar complex protein 3 homolog yes no 3;4 0.00013916 61.087 2 3 0.71126 1.0369 14.658 5 Median 0.82347 1.0826 16.632 2 0 Median 0.62292 1.0369 16.616 3 0 Median 117620000 69842000 47780000 44019000 24974000 19045000 73604000 44869000 28735000 3456 643 3544 12458;12459;12460;12461;12462 18860;18861;18862;18863;18864;18865;18866 18860 7 FAALDNEEEDKEEEIIK GKEEKSKGKAKPQNKFAALDNEEEDKEEEI ALDNEEEDKEEEIIKEKEPPKQGKEKAKKA K F A I K E 2 0 1 2 0 0 6 0 0 2 1 2 0 1 0 0 0 0 0 0 0 0 17 1 2020.9477 Q8NE71;Q2L6I2;B4DNU2;Q5STZ8 Q8NE71 193 209 ABCF1 ATP-binding cassette sub-family F member 1 yes no 3 0.00012086 88.19 4 2 0.68729 0.84834 4.0042 6 Median 0.70798 0.86829 4.3109 4 0 Median 0.51898 0.83425 0.28199 2 0 Median 158740000 96983000 61753000 87129000 48366000 38763000 71607000 48617000 22990000 3457 1653 3545 12463;12464;12465;12466;12467;12468 18867;18868;18869;18870;18871;18872;18873;18874;18875;18876;18877 18873 11 FAALITVLALAEK YQILLKTRDSSPKVRFAALITVLALAEKLK VRFAALITVLALAEKLKENYIVLLPESIPF R F A E K L 4 0 0 0 0 0 1 0 0 1 3 1 0 1 0 0 1 0 0 1 0 0 13 0 1358.8173 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8;Q8N7L7;Q96ES5 B2RWN5 2082 2094 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 2.2113E-10 126.03 4 0.95323 1.2337 12.938 3 Median 0.95323 1.2337 12.938 3 0 Median NaN NaN NaN 0 0 Median 51051000 29196000 21856000 51051000 29196000 21856000 0 0 0 3458 748 3546 12469;12470;12471;12472 18878;18879;18880;18881;18882;18883;18884 18882 7 FACHSASLTVR ELDNMPLRGKQLRVRFACHSASLTVRNLPQ LRVRFACHSASLTVRNLPQYVSNELLEEAF R F A V R N 2 1 0 0 1 0 0 0 1 0 1 0 0 1 0 2 1 0 0 1 0 0 11 0 1247.6081 A8K525;A0A0S2Z4Z9;Q15233;C9IZL7;C9JYS8 A8K525 143 153 NONO Non-POU domain-containing octamer-binding protein yes no 2;3 0.0013479 109.83 4 0.37562 0.51144 1.3124 2 Median 0.37562 0.51144 1.3124 2 0 Median NaN NaN NaN 0 0 Median 62015000 44373000 17642000 62015000 44373000 17642000 0 0 0 3459 473 3547 12473;12474;12475;12476 18885;18886;18887;18888 18887 4 FADDTYTESYISTIGVDFK LIGDSGVGKSCLLLRFADDTYTESYISTIG TYTESYISTIGVDFKIRTIELDGKTIKLQI R F A F K I 1 0 0 3 0 0 1 1 0 2 0 1 0 2 0 2 3 0 2 1 0 0 19 0 2170.9946 Q5U0I6;P62820;E9PLD0;B7Z8M7;Q9H0U4;Q9H1C9 Q5U0I6 31 49 RAB1A;RAB1B Ras-related protein Rab-1A;Ras-related protein Rab-1B yes no 2 8.4965E-62 207.97 4 0.77007 0.98639 14.191 3 Median 0.77007 0.98639 14.191 3 0 Median NaN NaN NaN 0 0 Median 38872000 22578000 16294000 38872000 22578000 16294000 0 0 0 3460 1412 3548 12477;12478;12479;12480 18889;18890;18891;18892;18893;18894;18895 18890 7 FADLSEAANR AAKNLQEAEEWYKSKFADLSEAANRNNDAL WYKSKFADLSEAANRNNDALRQAKQESTEY K F A N R N 3 1 1 1 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 10 0 1092.52 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;B0YJC5;Q5JVS8 V9HWE1 295 304 HEL113;VIM Vimentin yes no 2 9.613E-12 145.65 2 2 1.058 1.5574 30.024 4 Median 0.83973 1.1506 22.612 2 0 Median 1.1563 1.8359 3.0749 2 0 Median 489500000 274400000 215100000 415710000 238880000 176830000 73785000 35518000 38266000 3461 1245 3549 12481;12482;12483;12484 18896;18897;18898;18899;18900;18901;18902 18897 7 FADLSEAANRNNDALR AAKNLQEAEEWYKSKFADLSEAANRNNDAL ADLSEAANRNNDALRQAKQESTEYRRQVQS K F A L R Q 4 2 3 2 0 0 1 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 16 1 1775.8551 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;B0YJC5;Q5JVS8 V9HWE1 295 310 HEL113;VIM Vimentin yes no 3 3.5748E-08 82.102 3 0.81372 1.1244 16.486 3 Median 0.81372 1.1244 16.486 3 0 Median NaN NaN NaN 0 0 Median 43678000 21411000 22267000 43678000 21411000 22267000 0 0 0 3462 1245 3550 12485;12486;12487 18903;18904;18905;18906;18907;18908 18907 6 FADNTFSGSYITTIGVDFK IIGDSGVGKSSLLLRFADNTFSGSYITTIG TFSGSYITTIGVDFKIRTVEINGEKVKLQI R F A F K I 1 0 1 2 0 0 0 2 0 2 0 1 0 3 0 2 3 0 1 1 0 0 19 0 2081.9946 B4DTA6;F5H157;Q15286 B4DTA6 28 46 RAB35 Ras-related protein Rab-35 yes no 2 0.0022836 66.387 2 0.55182 0.70159 44.22 2 Median 0.55182 0.70159 44.22 2 0 Median NaN NaN NaN 0 0 Median 5057000 3234600 1822400 5057000 3234600 1822400 0 0 0 3463 857 3551 12488;12489 18909;18910 18910 2 FAEALGSTEAK ITKLRKMVDQLFCKKFAEALGSTEAKAVPY FCKKFAEALGSTEAKAVPYQKFEAHPNDLY K F A A K A 3 0 0 0 0 0 2 1 0 0 1 1 0 1 0 1 1 0 0 0 0 0 11 0 1122.5557 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;B4DRA9 X5D2J9 437 447 GTF2I General transcription factor II-I yes no 2 0.0044926 66.595 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7119300 7119300 0 7119300 7119300 0 0 0 0 3464 651 3552 12490 18911 18911 1 FAEDNFNNTYISTIGIDFK LIGDSGVGKTCLIIRFAEDNFNNTYISTIG NFNNTYISTIGIDFKIRTVDIEGKKIKLQV R F A F K I 1 0 3 2 0 0 1 1 0 3 0 1 0 3 0 1 2 0 1 0 0 0 19 0 2208.0375 D3DV69;A0A024RB27;Q504R6;P51153 D3DV69 28 46 hCG_1996054;hCG_24991;RAB13 Ras-related protein Rab-13 yes no 2 7.2418E-11 123.38 4 0.33213 0.4332 1.665 2 Median 0.33213 0.4332 1.665 2 0 Median NaN NaN NaN 0 0 Median 14310000 13287000 1022800 14310000 13287000 1022800 0 0 0 3465 258 3553 12491;12492;12493;12494 18912;18913;18914;18915;18916 18913 5 FAEEQLLK ______________________________ VKSRGMKFAEEQLLKHGWTQGKGLGRKENG K F A L K H 1 0 0 0 0 1 2 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 8 0 976.52295 Q5T3I0;A8KAG1;A0A0A0MRK1;E9PAV9;F8W895;E9PPY4;F2Z3C6;B4DVU2 Q5T3I0 14 21 GPATCH4 G patch domain-containing protein 4 yes no 2 0.0080124 99.375 4 2 0.88518 1.1763 7.4318 6 Median 0.92071 1.1712 9.5894 4 0 Median 0.77928 1.1763 0.25465 2 0 Median 110460000 55549000 54907000 79299000 38066000 41233000 31158000 17483000 13674000 3466 1568 3554 12495;12496;12497;12498;12499;12500 18917;18918;18919;18920;18921;18922;18923;18924;18925;18926;18927 18924 11 FAELETILGDIDR KFLEFGPENCTSWIKFAELETILGDIDRAR IKFAELETILGDIDRARAIYELAISQPRLD K F A D R A 1 1 0 2 0 0 2 1 0 2 2 0 0 1 0 0 1 0 0 0 0 0 13 0 1490.7617 Q69YP1;Q5JY65;Q9BZJ0 Q69YP1 526 538 DKFZp762M013;CRNKL1 Crooked neck-like protein 1 yes no 2 6.3545E-15 112.13 4 0.43695 0.58327 NaN 1 Median 0.43695 0.58327 NaN 1 0 Median NaN NaN NaN 0 0 Median 2651600 1886700 764850 2651600 1886700 764850 0 0 0 3467 1559 3555 12501;12502;12503;12504 18928;18929;18930;18931;18932 18932 5 FAEVECLAESHQHLSK MSEDPSHPSMALNTRFAEVECLAESHQHLS AEVECLAESHQHLSKESMAGNKPANAVLHK R F A S K E 2 0 0 0 1 1 3 0 2 0 2 1 0 1 0 2 0 0 0 1 0 0 16 0 1883.8836 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 1796 1811 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 9.5196E-10 89.541 2 2 0.92297 1.2658 26.291 4 Median 0.79838 0.98119 19.819 2 0 Median 0.98747 1.4734 5.2736 2 0 Median 77485000 41561000 35924000 60881000 33782000 27099000 16604000 7779400 8825000 3468 428 3556 12505;12506;12507;12508 18933;18934;18935;18936;18937;18938;18939;18940 18935 8 FAEVTQEVEVARPVDK NPKAEDYEENLQVMRFAEVTQEVEVARPVD AEVTQEVEVARPVDKAICGLTPGRRYRNQP R F A D K A 2 1 0 1 0 1 3 0 0 0 0 1 0 1 1 0 1 0 0 4 0 0 16 1 1815.9367 H7BYN4;Q02241 H7BYN4 429 444 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 3 6.481E-11 136.33 4 2 0.83916 1.2045 7.6332 6 Median 0.8615 1.1378 7.6194 4 0 Median 0.8114 1.2764 1.3429 2 0 Median 89230000 46513000 42716000 64279000 30591000 33688000 24951000 15922000 9028700 3469 1117 3557 12509;12510;12511;12512;12513;12514 18941;18942;18943;18944;18945;18946;18947;18948;18949;18950 18941 9 FAEYGEIK TGVHEEATEEDIHDKFAEYGEIKNIHLNLD EEDIHDKFAEYGEIKNIHLNLDRRTGYLKG K F A I K N 1 0 0 0 0 0 2 1 0 1 0 1 0 1 0 0 0 0 1 0 0 0 8 0 955.4651 A0A023T787;Q9Y5S9;A0A0J9YW13 A0A023T787 93 100 RBM8;RBM8A RNA-binding protein 8A yes no 2 0.019628 98.997 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3470 2 3558 12515 18951 18951 1 FAGGDYTTTIEAFISASGR LAIPVVKGRKTEKEKFAGGDYTTTIEAFIS DYTTTIEAFISASGRAIQGGTSHHLGQNFS K F A G R A 3 1 0 1 0 0 1 3 0 2 0 0 0 2 0 2 3 0 1 0 0 0 19 0 1962.9323 P07814;B4DP50 P07814 1216 1234 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 7.3089E-24 193.51 4 0.64392 0.87112 8.9888 3 Plateau 0.64392 0.87112 8.9888 3 0 Plateau NaN NaN NaN 0 0 Median 37860000 25636000 12224000 37860000 25636000 12224000 0 0 0 3471 1242 3559 12516;12517;12518;12519 18952;18953;18954;18955;18956;18957;18958 18953 7 FAGVDIR QYKLLEPVLLLGKERFAGVDIRVRVKGGGH VLLLGKERFAGVDIRVRVKGGGHVAQIYAI R F A I R V 1 1 0 1 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 7 0 776.41809 P62249;M0R210;M0R3H0;A0A087WZ27;M0R1M5;M0QX76;Q6IPX4;B4DP32 P62249 63 69 RPS16;ZNF90 40S ribosomal protein S16 yes no 2 0.022743 108.98 2 2 0.95447 1.5 19.722 3 Median 0.7697 1.0712 NaN 1 0 Median 0.96118 1.5073 0.6856 2 0 Median 190110000 116470000 73639000 132830000 86967000 45863000 57282000 29506000 27776000 3472 1400 3560 12520;12521;12522;12523 18959;18960;18961;18962 18959 4 FAHIDGDHLTLLNVYHAFK RPTEAKKAADEAKMRFAHIDGDHLTLLNVY DGDHLTLLNVYHAFKQNHESVQWCYDNFIN R F A F K Q 2 0 1 2 0 0 0 1 3 1 3 1 0 2 0 0 1 0 1 1 0 0 19 0 2210.1273 O43143;B4E0S6 O43143 617 635 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 4 0.013845 24.41 1 0.64418 0.8136 NaN 1 Median 0.64418 0.8136 NaN 1 0 Median NaN NaN NaN 0 0 Median 8546400 5336700 3209700 8546400 5336700 3209700 0 0 0 3473 1180 3561 12524 18963;18964 18963 2 FAHLLQPIR ______________________________ EDVEARFAHLLQPIRDLTKNWEVDVAAQLG R F A I R D 1 1 0 0 0 1 0 0 1 1 2 0 0 1 1 0 0 0 0 0 0 0 9 0 1093.6396 A0A0A6YYG7;Q6IBW4;E5RJN3;E5RJL4;F8WAR3 A0A0A6YYG7 8 16 NCAPH2 Condensin-2 complex subunit H2 yes no 3 0.0066768 68.383 3 0.68057 0.94765 14.556 2 Median 0.68057 0.94765 14.556 2 0 Median NaN NaN NaN 0 0 Median 9486800 4881000 4605800 9486800 4881000 4605800 0 0 0 3474 406 3562 12525;12526;12527 18965;18966;18967;18968 18968 4 FAHLLQPIRDLTK ______________________________ ARFAHLLQPIRDLTKNWEVDVAAQLGEYLE R F A T K N 1 1 0 1 0 1 0 0 1 1 3 1 0 1 1 0 1 0 0 0 0 0 13 1 1550.8933 A0A0A6YYG7;Q6IBW4;E5RJN3;E5RJL4;F8WAR3 A0A0A6YYG7 8 20 NCAPH2 Condensin-2 complex subunit H2 yes no 3 0.0017809 43.297 1 0.66324 0.83876 NaN 1 Median 0.66324 0.83876 NaN 1 0 Median NaN NaN NaN 0 0 Median 5892900 3453600 2439400 5892900 3453600 2439400 0 0 0 3475 406 3563 12528 18969;18970 18970 2 FAIQDISVEETSAK NAKMTLGMIWTIILRFAIQDISVEETSAKE RFAIQDISVEETSAKEGLLLWCQRKTAPYK R F A A K E 2 0 0 1 0 1 2 0 0 2 0 1 0 1 0 2 1 0 0 1 0 0 14 0 1536.7672 A0A0S2Z3G9;O43707;B4E337;B4DSX0;B2R8Y4;B4DZQ2;A0A087WSZ2;Q08043;H9KV75;B7Z565;A0A024R694;P12814;Q86TX4;G3V2W4;B4DRP5;G3V2N5;B7Z2N5;P35609;G3V2E8;G3V5M4;G3V2X9;B7Z4V1 A0A0S2Z3G9 153 166 ACTN4;ACTN3;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-3;Alpha-actinin-1;Alpha-actinin-2 no no 2 0.00048776 60.255 1 0.52695 0.64945 NaN 1 Median 0.52695 0.64945 NaN 1 0 Median NaN NaN NaN 0 0 Median 25810000 18331000 7478800 25810000 18331000 7478800 0 0 0 3476 451;157 3564 12529 18971 18971 1 FALACNASDK QALRRTMEIYSKTTRFALACNASDKIIEPI SKTTRFALACNASDKIIEPIQSRCAVLRYT R F A D K I 3 0 1 1 1 0 0 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 10 0 1095.5019 Q75MT5;B5BUD2;P35250;H7C5P4;A0A087WVY3 Q75MT5 133 142 RFC2 Replication factor C subunit 2 yes no 2 0.016689 56.258 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3588100 3588100 0 3588100 3588100 0 0 0 0 3477 898 3565 12530 18972 18972 1 FALENFTVSAAK TRRMNPTRSARPPEKFALENFTVSAAKFAE PEKFALENFTVSAAKFAEEFYSFRRRKTIG K F A A K F 3 0 1 0 0 0 1 0 0 0 1 1 0 2 0 1 1 0 0 1 0 0 12 0 1296.6714 A8K8X5;A0A024RA51;Q96GN5 A8K8X5 281 292 CDCA7L Cell division cycle-associated 7-like protein yes no 2 0.0089277 91.549 3 1 1.5062 1.927 NaN 1 Median 1.5062 1.927 NaN 1 0 Median NaN NaN NaN 0 0 Median 5867600 4229500 1638100 3097400 1459300 1638100 2770200 2770200 0 3478 236 3566 12531;12532;12533;12534 18973;18974;18975;18976;18977 18976 5 FALEQQR EYNSNMSPEEKMMKRFALEQQRHHEKKSIY PEEKMMKRFALEQQRHHEKKSIYNLNEDEE R F A Q R H 1 1 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 890.46102 A8KA74;P78316;E9PFK5 A8KA74 105 111 NOP14 Nucleolar protein 14 yes no 2 0.04948 50.966 1 0.79416 1.0312 NaN 1 Median NaN NaN NaN 0 0 Median 0.79416 1.0312 NaN 1 0 Median 3980100 2544800 1435300 0 0 0 3980100 2544800 1435300 3479 652 3567 12535 18978 18978 1 FALGIFAINEAVESGDVGK GGIWQSNKDTQEAQKFALGIFAINEAVESG IFAINEAVESGDVGKTLSALRSPDVGLYGV K F A G K T 3 0 1 1 0 0 2 3 0 2 1 1 0 2 0 1 0 0 0 2 0 0 19 0 1935.9942 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;Q6P1N4;H0YLE8;B4E2M0 A4QPB0 623 641 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 2.301E-09 100.19 2 0.49908 0.64214 NaN 1 Median 0.49908 0.64214 NaN 1 0 Median NaN NaN NaN 0 0 Median 8518600 7305900 1212600 8518600 7305900 1212600 0 0 0 3480 287 3568 12536;12537 18979;18980 18980 2 FALGSVVAVTK EMVLPGFPDADSFVKFALGSVVAVTKASGG SFVKFALGSVVAVTKASGGLPQFGDEYDFY K F A T K A 2 0 0 0 0 0 0 1 0 0 1 1 0 1 0 1 1 0 0 3 0 0 11 0 1090.6386 Q01780;B4DKG8;B4DFE4;Q59G73;K7EJ37 Q01780 38 48 EXOSC10 Exosome component 10 yes no 2 0.0012624 96.342 2 1 0.62157 0.81072 30.293 3 Median 0.68571 0.88245 11.99 2 0 Median 0.38097 0.53325 NaN 1 0 Median 20761000 12631000 8129900 14857000 8477000 6379600 5904600 4154300 1750300 3481 1433 3569 12538;12539;12540 18981;18982;18983;18984;18985 18983 5 FALPSPQHILGLPVGQHIYLSAR LIDREIISHDTRRFRFALPSPQHILGLPVG ILGLPVGQHIYLSARIDGNLVVRPYTPISS R F A A R I 2 1 0 0 0 2 0 2 2 2 4 0 0 1 3 2 0 0 1 1 0 0 23 0 2513.3907 A0A024R4X0;P00387;B1AHF3 A0A024R4X0 52 74 CYB5R3 NADH-cytochrome b5 reductase;NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 4 1.2508E-12 77.847 4 0.75196 0.99115 10.527 3 Median 0.75196 0.99115 10.527 3 0 Median NaN NaN NaN 0 0 Median 49403000 26948000 22455000 49403000 26948000 22455000 0 0 0 3482 129 3570 12541;12542;12543;12544 18986;18987;18988;18989;18990;18991 18990 6 FALTFGLDQLK RSSSTFSGIKELARRFALTFGLDQLKTREA LARRFALTFGLDQLKTREAIAMLHKDGIEF R F A L K T 1 0 0 1 0 1 0 1 0 0 3 1 0 2 0 0 1 0 0 0 0 0 11 0 1251.6863 B2R8Y6;Q6MZM4;Q6MZM3;Q6MZP3;Q8N3U4;B4DQ46 B2R8Y6 886 896 DKFZp686P16143;DKFZp686C21148;DKFZp686I05169;STAG2 Cohesin subunit SA-2 yes no 2 0.048063 61.78 1 0.47444 0.61922 NaN 1 Median 0.47444 0.61922 NaN 1 0 Median NaN NaN NaN 0 0 Median 1854000 1156800 697210 1854000 1156800 697210 0 0 0 3483 717 3571 12545 18992 18992 1 FALVAPVQAEEDSGNVNGK WSLLSEKQRARYNTKFALVAPVQAEEDSGN APVQAEEDSGNVNGKKRNHTKRIQDPTEDA K F A G K K 3 0 2 1 0 1 2 2 0 0 1 1 0 1 1 1 0 0 0 3 0 0 19 0 1943.9589 O96028;Q05CW4;H0Y9L4 O96028 506 524 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 2 0.00014958 100.22 1 1.2653 1.6508 NaN 1 Median 1.2653 1.6508 NaN 1 0 Median NaN NaN NaN 0 0 Median 1848400 1037700 810730 1848400 1037700 810730 0 0 0 3484 1228 3572 12546 18993 18993 1 FANHSVNPNCYAK NDFVVDATRKGNKIRFANHSVNPNCYAKVM IRFANHSVNPNCYAKVMMVNGDHRIGIFAK R F A A K V 2 0 3 0 1 0 0 0 1 0 0 1 0 1 1 1 0 0 1 1 0 0 13 0 1520.683 A0A090N8E9;Q15910;S4S3R8;Q75MP9;Q75MQ0;F2YMM1;A0A0A0MSY9;Q92800 A0A090N8E9 691 703 EZH2;EZH1 Histone-lysine N-methyltransferase EZH2;Histone-lysine N-methyltransferase EZH1 no no 2;3 1.7132E-32 206.36 6 0.86803 1.0536 9.8235 5 Median 0.86803 1.0536 9.8235 5 0 Median NaN NaN NaN 0 0 Median 74240000 44158000 30082000 74240000 44158000 30082000 0 0 0 3485 381;401 3573 12547;12548;12549;12550;12551;12552 18994;18995;18996;18997;18998;18999;19000;19001 18997 8 FANSLVGVQQQLQAFNTYR LEWIEQTIIILNNRKFANSLVGVQQQLQAF LVGVQQQLQAFNTYRTVEKPPKFTEKGNLE K F A Y R T 2 1 2 0 0 4 0 1 0 0 2 0 0 2 0 1 1 0 1 2 0 0 19 0 2183.1124 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;F8W6C1 B2ZZ89 330 348 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 5.1465E-72 225.31 4 0.89293 1.1926 12.367 4 Linear 0.89293 1.1926 12.367 4 0 Linear NaN NaN NaN 0 0 Median 63609000 36495000 27113000 63609000 36495000 27113000 0 0 0 3486 346 3574 12553;12554;12555;12556 19002;19003;19004;19005;19006;19007 19002 6 FANYIDK TRTNEKVELQELNDRFANYIDKVRFLEQQN ELQELNDRFANYIDKVRFLEQQNKILLAEL R F A D K V 1 0 1 1 0 0 0 0 0 1 0 1 0 1 0 0 0 0 1 0 0 0 7 0 869.42832 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;A0A1B0GUA0;A0A1B0GTT5 V9HWE1 114 120 HEL113;VIM Vimentin yes no 2 0.014407 111.82 3 2 0.97844 1.2726 27.698 5 Median 0.75967 0.99748 14.454 3 0 Median 1.0847 1.7226 2.4157 2 0 Median 500760000 282540000 218220000 428630000 247160000 181470000 72134000 35385000 36749000 3487 1245 3575 12557;12558;12559;12560;12561 19008;19009;19010;19011;19012;19013;19014 19011 7 FAQHGTFEYEYSQR QKNPMYQKERETPPRFAQHGTFEYEYSQRW RFAQHGTFEYEYSQRWKSLDEMEKQQREQV R F A Q R W 1 1 0 0 0 2 2 1 1 0 0 0 0 2 0 1 1 0 2 0 0 0 14 0 1761.7747 Q9BSV4;Q86VG2;P23246;Q6PIX2;H0Y9K7 Q9BSV4 407 420 SFPQ Splicing factor, proline- and glutamine-rich yes no 3 0.0016191 76.156 3 0.45552 0.61611 1.4744 3 Median 0.45552 0.61611 1.4744 3 0 Median NaN NaN NaN 0 0 Median 38607000 25392000 13215000 38607000 25392000 13215000 0 0 0 3488 1292 3576 12562;12563;12564 19015;19016;19017;19018 19015 4 FAQIDEK VEQMKEEKKKQIEQKFAQIDEKTEKAKEER KKKQIEQKFAQIDEKTEKAKEERLAEEKAK K F A E K T 1 0 0 1 0 1 1 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 7 0 849.42323 Q9NQS7;B3KPD3 Q9NQS7 603 609 INCENP Inner centromere protein yes no 2 0.010242 119.57 2 1 0.82471 1.1775 3.2488 2 Median 0.91224 1.1508 NaN 1 0 Median 0.74557 1.2049 NaN 1 0 Median 131110000 74502000 56608000 88209000 49680000 38529000 42900000 24822000 18079000 3489 1752 3577 12565;12566;12567 19019;19020;19021;19022;19023 19020 5 FAQLEFQLGDAER LECLPSKEHVDVIAKFAQLEFQLGDAERAK AKFAQLEFQLGDAERAKAIFENTLSTYPKR K F A E R A 2 1 0 1 0 2 2 1 0 0 2 0 0 2 0 0 0 0 0 0 0 0 13 0 1522.7416 Q14690 Q14690 1767 1779 PDCD11 Protein RRP5 homolog yes yes 2 6.3457E-11 146.71 3 2 0.83267 1.126 1.7299 5 Median 0.85693 1.1511 1.53 3 0 Median 0.72418 1.1178 0.35846 2 0 Median 97585000 56787000 40798000 52972000 29849000 23123000 44613000 26938000 17675000 3490 1494 3578 12568;12569;12570;12571;12572 19024;19025;19026;19027;19028;19029;19030;19031;19032;19033 19033 10 FAQPGSFEYEYAMR IKNQQFHKEREQPPRFAQPGSFEYEYAMRW RFAQPGSFEYEYAMRWKALIEMEKQQQDQV R F A M R W 2 1 0 0 0 1 2 1 0 0 0 0 1 2 1 1 0 0 2 0 0 0 14 0 1694.7399 A8K525;A0A0S2Z4Z9;Q15233;H7C367;C9JYS8 A8K525 257 270 NONO Non-POU domain-containing octamer-binding protein yes no 2 0.00027178 85.958 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1592500 1592500 0 1592500 1592500 0 0 0 0 3491 473 3579 12573 19034 19034 1 FASCVDASGGLK LKHHDGRNNGDAIVKFASCVDASGGLKCHR IVKFASCVDASGGLKCHRSFMGSRFIEVMQ K F A L K C 2 0 0 1 1 0 0 2 0 0 1 1 0 1 0 2 0 0 0 1 0 0 12 0 1210.5652 B9ZVT1;Q8IXT5 B9ZVT1 201 212 RBM12B RNA-binding protein 12B yes no 2 0.011111 51.927 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2903600 2903600 0 2903600 2903600 0 0 0 0 3492 931 3580 12574 19035 19035 1 FASFIDK VRAEEREQIKTLNNKFASFIDKVRFLEQQN QIKTLNNKFASFIDKVRFLEQQNKVLETKW K F A D K V 1 0 0 1 0 0 0 0 0 1 0 1 0 2 0 1 0 0 0 0 0 0 7 0 826.4225 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;B4DRY0;CON__P07744;H0YHD9;F8VS61;CON__Q9NSB2;CON__Q6ISB0;Q9NSB2;CON__P04259;B4DKV4;CON__P05787;P05787;F8VUG2;CON__Q9H552;CON__P13647;P13647;B4E1T1;F8W0C6;F8W1U3;CON__O95678;O95678;CON__P08729;CON__Q3KNV1;P08729;B3KY79;CON__P35908;P35908;Q01546;CON__Q01546;CON__Q14CN4-1;CON__Q6IME9;Q14CN4;CON__Q3SY84;Q3SY84;CON__Q5XKE5;Q5XKE5 B4DRR0 145 151 KRT6A;KRT6C;KRT72;KRT77;KRT84;KRT8;KRT5;KRT75;KRT7;KRT2;KRT76;KRT71;KRT79 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cuticular Hb4;Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 71;Keratin, type II cytoskeletal 79 no no 1;2 0.0051612 125.25 4 2 0.19615 0.25926 46.592 5 Median 0.19506 0.25423 1.622 3 0 Median 0.38317 0.59642 0.55062 2 0 Median 579710000 480570000 99144000 524400000 442360000 82040000 55316000 38211000 17104000 + 3493 459;953;955;964;968;957;961;1068;946;972;967 3581 12575;12576;12577;12578;12579;12580 19036;19037;19038;19039;19040;19041;19042;19043;19044 19037 9 FASFPDYLVIQIK STALQAKSVAVKTTRFASFPDYLVIQIKKF TRFASFPDYLVIQIKKFTFGLDWVPKKLDV R F A I K K 1 0 0 1 0 1 0 0 0 2 1 1 0 2 1 1 0 0 1 1 0 0 13 0 1539.8337 A0A140VJZ1;P45974 A0A140VJZ1 562 574 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 3.4229E-06 93.111 3 0.50866 0.65304 15.848 2 Median 0.50866 0.65304 15.848 2 0 Median NaN NaN NaN 0 0 Median 9261500 5850900 3410700 9261500 5850900 3410700 0 0 0 3494 505 3582 12581;12582;12583 19045;19046;19047;19048 19046 4 FASVLPEYLK SMENNKEAKLYTINKFASVLPEYLKVFKDD YTINKFASVLPEYLKVFKDDRCKIPLFMLM K F A L K V 1 0 0 0 0 0 1 0 0 0 2 1 0 1 1 1 0 0 1 1 0 0 10 0 1165.6383 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DXB7 Q86XI2 651 660 NCAPG2 Condensin-2 complex subunit G2 yes no 2 0.00045457 107.69 4 2 0.6477 0.93468 10.724 5 Median 0.65554 0.83904 14.326 3 0 Median 0.62674 0.95555 3.1231 2 0 Median 93476000 56055000 37420000 51557000 31023000 20534000 41918000 25032000 16886000 3495 1621 3583 12584;12585;12586;12587;12588;12589 19049;19050;19051;19052;19053;19054;19055;19056;19057 19054 9 FASYLTFSPSEVK DMLRVEQVKIHAGPKFASYLTFSPSEVKSL PKFASYLTFSPSEVKSLRTEYGDLELCIEV K F A V K S 1 0 0 0 0 0 1 0 0 0 1 1 0 2 1 3 1 0 1 1 0 0 13 0 1474.7344 P54886 P54886 650 662 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 1.3214E-05 132.32 4 2 2.8258 4.3926 39.088 5 Linear 1.5647 1.98 15.99 3 0 Plateau 2.3701 3.5507 2.14 2 0 Median 50241000 14281000 35960000 30578000 8113000 22465000 19664000 6167700 13496000 3496 1375 3584 12590;12591;12592;12593;12594;12595 19058;19059;19060;19061;19062;19063;19064;19065;19066;19067 19061 10 FATASADGQIYIYDGK SRFVNCVRFSPDGNRFATASADGQIYIYDG ATASADGQIYIYDGKTGEKVCALGGSKAHD R F A G K T 3 0 0 2 0 1 0 2 0 2 0 1 0 1 0 1 1 0 2 0 0 0 16 0 1718.8152 V9HWG7;Q53H17;Q53GN4;Q59ER5;O75083;D6RD66;B3KXN4;B4DY05 V9HWG7 204 219 HEL-S-52;WDR1 WD repeat-containing protein 1 yes no 2 9.4848E-06 109.22 2 0.9534 1.2132 4.6355 2 Median 0.9534 1.2132 4.6355 2 0 Median NaN NaN NaN 0 0 Median 9809400 5522000 4287300 9809400 5522000 4287300 0 0 0 3497 1195 3585 12596;12597 19068;19069;19070;19071 19068 4 FATDGEGYKPCDPQVIR IQAERVRGVNASAQKFATDGEGYKPCDPQV TDGEGYKPCDPQVIRDRVAHMEFCYQELCQ K F A I R D 1 1 0 2 1 1 1 2 0 1 0 1 0 1 2 0 1 0 1 1 0 0 17 1 1951.9098 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;F8W6C1 B2ZZ89 594 610 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 0.00014819 90.853 3 0.65825 0.87343 1.2297 3 Median 0.65825 0.87343 1.2297 3 0 Median NaN NaN NaN 0 0 Median 50088000 29986000 20101000 50088000 29986000 20101000 0 0 0 3498 346 3586 12598;12599;12600 19072;19073;19074 19072 3 FATHAAALSVR ELDDTPMRGRQLRVRFATHAAALSVRNLSP LRVRFATHAAALSVRNLSPYVSNELLEEAF R F A V R N 4 1 0 0 0 0 0 0 1 0 1 0 0 1 0 1 1 0 0 1 0 0 11 0 1142.6196 Q9BSV4;Q86VG2;P23246;Q6PIX2 Q9BSV4 293 303 SFPQ Splicing factor, proline- and glutamine-rich yes no 3 0.0042112 67.879 2 0.49026 0.6648 18.584 2 Median 0.49026 0.6648 18.584 2 0 Median NaN NaN NaN 0 0 Median 13670000 7993400 5676900 13670000 7993400 5676900 0 0 0 3499 1292 3587 12601;12602 19075;19076 19075 2 FAVGIVIGR NSRMGGGSIEVSVPRFAVGIVIGRNGEMIK EVSVPRFAVGIVIGRNGEMIKKIQNDAGVR R F A G R N 1 1 0 0 0 0 0 2 0 2 0 0 0 1 0 0 0 0 0 2 0 0 9 0 930.56509 A0A024R8A7;Q96I24;Q6PJY1;Q59FU3;B4E0X8;B4DWL1;E9PEB5;B4DT31;Q96AE4 A0A024R8A7 263 271 hCG_31253;FUBP3;FUBP1 Far upstream element-binding protein 3;Far upstream element-binding protein 1 yes no 2 0.015755 58.917 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2836800 0 2836800 0 0 0 2836800 0 2836800 3500 194 3588 12603 19077 19077 1 FAVLHGEAPR KETIIAFAWEPNGSKFAVLHGEAPRISVSF PNGSKFAVLHGEAPRISVSFYHVKNNGKIE K F A P R I 2 1 0 0 0 0 1 1 1 0 1 0 0 1 1 0 0 0 0 1 0 0 10 0 1095.5825 Q96G38;B4DXN6;B4DV79;A4D210;A0A024R821;P55884;Q59FS8 Q96G38 385 394 EIF3B;EIF3S9 Eukaryotic translation initiation factor 3 subunit B yes no 3 0.042171 49.3 1 0.34825 0.47353 NaN 1 Median 0.34825 0.47353 NaN 1 0 Median NaN NaN NaN 0 0 Median 3869900 2838300 1031500 3869900 2838300 1031500 0 0 0 3501 190 3589 12604 19078 19078 1 FAVLLTDKPTIPR LKCLLNLQIQHIDARFAVLLTDKPTIPREV ARFAVLLTDKPTIPREVFENSGILVTDVNN R F A P R E 1 1 0 1 0 0 0 0 0 1 2 1 0 1 2 0 2 0 0 1 0 0 13 1 1469.8606 Q5VWN6 Q5VWN6 2386 2398 FAM208B Protein FAM208B yes yes 3 0.00033125 59.185 1 2 0.91329 1.3722 39.495 2 Median NaN NaN NaN 0 0 Median 0.91329 1.3722 39.495 2 0 Median 11600000 5493900 6106000 2261800 2261800 0 9338100 3232100 6106000 3502 1579 3590 12605;12606;12607 19079;19080;19081;19082 19082 4 FAYKDPEK KETYEALLARFPNLRFAYKDPEKNWNRNCV ARFPNLRFAYKDPEKNWNRNCVKGLVASLI R F A E K N 1 0 0 1 0 0 1 0 0 0 0 2 0 1 1 0 0 0 1 0 0 0 8 1 996.49165 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 508 515 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2;3 1.0483E-32 209.37 6 2 0.69861 0.9254 11.824 8 Median 0.71423 0.87493 6.6323 6 0 Median 0.69126 1.1129 1.9191 2 0 Median 432740000 257560000 175180000 340670000 199490000 141180000 92070000 58071000 33999000 3503 50 3591 12608;12609;12610;12611;12612;12613;12614;12615 19083;19084;19085;19086;19087;19088;19089;19090;19091;19092;19093 19085 11 FAYLGR VPAALKVVRLKPTRKFAYLGRLAHEVGWKY VVRLKPTRKFAYLGRLAHEVGWKYQAVTAT K F A G R L 1 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 1 0 0 0 6 0 725.38606 Q53H34;P40429;Q5QTS3;M0QYS1;Q8J015;Q0VGL3;Q9BSQ6 Q53H34 135 140 RPL13A;RPL13a 60S ribosomal protein L13a no no 2 0.034713 104.03 3 0.72022 0.9975 1.8604 3 Median 0.72022 0.9975 1.8604 3 0 Median NaN NaN NaN 0 0 Median 1129200000 647900000 481300000 1129200000 647900000 481300000 0 0 0 3504 1332;1712 3592 12616;12617;12618 19094;19095;19096 19095 3 FAYNDQGQVR WAPTGGCCPGASLHKFAYNDQGQVRLRAGL ASLHKFAYNDQGQVRLRAGLPIYECNSRCR K F A V R L 1 1 1 1 0 2 0 1 0 0 0 0 0 1 0 0 0 0 1 1 0 0 10 0 1196.5574 O43463;B4DMP6 O43463 203 212 SUV39H1 Histone-lysine N-methyltransferase SUV39H1 yes no 2 8.3301E-08 127.56 4 2 0.7695 1.0306 12.381 5 Median 0.76283 1.0186 10.814 4 0 Median 0.81087 1.2534 NaN 1 0 Median 95588000 58274000 37314000 59005000 32783000 26222000 36583000 25491000 11092000 3505 1185 3593 12619;12620;12621;12622;12623;12624 19097;19098;19099;19100;19101;19102;19103;19104;19105;19106 19102 10 FCADCIITALR DMLKNTMTTKECLHRFCADCIITALRSGNK CLHRFCADCIITALRSGNKECPTCRKKLVS R F C L R S 2 1 0 1 2 0 0 0 0 2 1 0 0 1 0 0 1 0 0 0 0 0 11 0 1338.6424 X6RFN3;Q99496 X6RFN3 71 81 RNF2 E3 ubiquitin-protein ligase RING2 yes no 2 0.0029107 98.044 2 0.9887 1.3309 3.2173 2 Median 0.9887 1.3309 3.2173 2 0 Median NaN NaN NaN 0 0 Median 13134000 6398600 6735100 13134000 6398600 6735100 0 0 0 3506 1703 3594 12625;12626 19107;19108;19109 19109 3 FCADSDGFSQELR KSKDIVNKMTFHSQKFCADSDGFSQELRNF QKFCADSDGFSQELRNFNQEGTKLVEESVK K F C L R N 1 1 0 2 1 1 1 1 0 0 1 0 0 2 0 2 0 0 0 0 0 0 13 0 1530.6409 P52732;B2RAM6;Q59GZ5 P52732 772 784 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 2 0.0011346 96.756 1 1.2178 1.6976 NaN 1 Median 1.2178 1.6976 NaN 1 0 Median NaN NaN NaN 0 0 Median 4828400 2029500 2798900 4828400 2029500 2798900 0 0 0 3507 1366 3595 12627 19110 19110 1 FCAFGGNPPVTGPR PASPPPQIPPGLRPRFCAFGGNPPVTGPRS RFCAFGGNPPVTGPRSALAPNLLTSGKKKK R F C P R S 1 1 1 0 1 0 0 3 0 0 0 0 0 2 3 0 1 0 0 1 0 0 14 0 1475.698 Q05BI1;A0JLT1;A8K818;O15446 Q05BI1 149 162 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes no 2 0.00019949 69.01 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1821100 1821100 0 1821100 1821100 0 0 0 0 3508 527 3596 12628 19111 19111 1 FCDTCLQEFLSEGVFK KPMREPVQVSTCGHRFCDTCLQEFLSEGVF CDTCLQEFLSEGVFKCPEDQLPLDYAKIYP R F C F K C 0 0 0 1 2 1 2 1 0 0 2 1 0 3 0 1 1 0 0 1 0 0 16 0 1978.8805 A0A0C4DFM9;B4DUU9;F6SA91;A0A024QZ59;Q9BUZ4;C9JJ10;A0A024QZ19;Q2KJU5;Q2KJU6 A0A0C4DFM9 38 53 TRAF4 TNF receptor-associated factor 4 yes no 2 1.9134E-10 136.38 4 1.0719 1.1511 12.434 4 Linear 1.0719 1.1511 12.434 4 0 Linear NaN NaN NaN 0 0 Median 10807000 5354600 5452100 10807000 5354600 5452100 0 0 0 3509 5 3597 12629;12630;12631;12632 19112;19113;19114;19115;19116;19117 19114 6 FCEDLFSQVAR YTMMGFSEEPGIIPRFCEDLFSQVARKQTQ IIPRFCEDLFSQVARKQTQEVSYHIEMSFF R F C A R K 1 1 0 1 1 1 1 0 0 0 1 0 0 2 0 1 0 0 0 1 0 0 11 0 1370.6289 Q15058 Q15058 470 480 KIF14 Kinesin-like protein KIF14 yes yes 2 0.048279 46.462 1 0.78378 1.079 NaN 1 Median 0.78378 1.079 NaN 1 0 Median NaN NaN NaN 0 0 Median 4791700 2192200 2599400 4791700 2192200 2599400 0 0 0 3510 1504 3598 12633 19118 19118 0 FCEYETAEQGLLNR MVHKEKGANKMHKCKFCEYETAEQGLLNRH KFCEYETAEQGLLNRHLLAVHSKNFPHICV K F C N R H 1 1 1 0 1 1 3 1 0 0 2 0 0 1 0 0 1 0 1 0 0 0 14 0 1728.7777 A0A024RC04;B7ZKJ5;P17010;Q8WWU0;Q8WXB7;E9PEP7;P08048 A0A024RC04 523 536 ZFX;ZFY Zinc finger X-chromosomal protein;Zinc finger Y-chromosomal protein yes no 2 0.00026882 65.5 2 0.95919 1.3131 8.5169 2 Median 0.95919 1.3131 8.5169 2 0 Median NaN NaN NaN 0 0 Median 8067500 3487600 4579900 8067500 3487600 4579900 0 0 0 3511 286 3599 12634;12635 19119;19120 19120 2 FCFTPHTEEGCLSER APRRQQEQQVPILEKFCFTPHTEEGCLSER FCFTPHTEEGCLSERAALQEELQLCKGLVQ K F C E R A 0 1 0 0 2 0 3 1 1 0 1 0 0 2 1 1 2 0 0 0 0 0 15 0 1868.7822 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1117 1131 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 0.00063037 42.568 1 0.64738 0.85632 NaN 1 Median 0.64738 0.85632 NaN 1 0 Median NaN NaN NaN 0 0 Median 9220900 5047000 4173900 9220900 5047000 4173900 0 0 0 3512 486 3600 12636 19121 19121 1 FCGTSFFTVGDDK TIQAHEGFVRGICTRFCGTSFFTVGDDKTV TRFCGTSFFTVGDDKTVKQWKMDGPGYGDE R F C D K T 0 0 0 2 1 0 0 2 0 0 0 1 0 3 0 1 2 0 0 1 0 0 13 0 1479.634 A0A087WT20;Q9NV06;B3KME9 A0A087WT20 271 283 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2 1.354E-05 117.25 4 1.1007 1.375 12.921 3 Median 1.1007 1.375 12.921 3 0 Median NaN NaN NaN 0 0 Median 38433000 17059000 21374000 38433000 17059000 21374000 0 0 0 3513 331 3601 12637;12638;12639;12640 19122;19123;19124;19125;19126 19125 5 FCIQEIEK EKAPAHHPAAISTAKFCIQEIEKSGGSKEA AAISTAKFCIQEIEKSGGSKEATTTLHMLT K F C E K S 0 0 0 0 1 1 2 0 0 2 0 1 0 1 0 0 0 0 0 0 0 0 8 0 1065.5165 B3KMR5;Q5JTH9 B3KMR5 287 294 RRP12 RRP12-like protein yes no 2 0.0083292 98.997 3 0.89286 1.1269 8.4038 3 Median 0.89286 1.1269 8.4038 3 0 Median NaN NaN NaN 0 0 Median 41821000 22549000 19273000 41821000 22549000 19273000 0 0 0 3514 756 3602 12641;12642;12643 19127;19128;19129 19128 3 FCIWTESAFR KLNILKLAPGGHVGRFCIWTESAFRKLDEL GHVGRFCIWTESAFRKLDELYGTWRKAASL R F C F R K 1 1 0 0 1 0 1 0 0 1 0 0 0 2 0 1 1 1 0 0 0 0 10 0 1315.6019 P36578;Q59GY2;H3BM89;B4DMJ6;B4DMJ2 P36578 249 258 RPL4 60S ribosomal protein L4 yes no 2 0.0033219 67.563 2 0.49867 0.77763 4.358 2 Median NaN NaN NaN 0 0 Median 0.49867 0.77763 4.358 2 0 Median 51069000 32860000 18209000 0 0 0 51069000 32860000 18209000 3515 1325 3603 12644;12645 19130;19131;19132;19133 19131 4 FCMISATFCDSQLR SNPDLSAAASLALGKFCMISATFCDSQLRL KFCMISATFCDSQLRLLFTMLEKSPLPIVR K F C L R L 1 1 0 1 2 1 0 0 0 1 1 0 1 2 0 2 1 0 0 0 0 0 14 0 1734.7528 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1044 1057 NCAPD2 Condensin complex subunit 1 yes no 2 0.02953 45.359 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3516 757 3604 12646 19134 19134 1 FCNRYPNIELSYEVVDK ALLQLTDSQIADVARFCNRYPNIELSYEVV NRYPNIELSYEVVDKDSIRSGGPVVVLVQL R F C D K D 0 1 2 1 1 0 2 0 0 1 1 1 0 1 1 1 0 0 2 2 0 0 17 1 2145.0201 O75643;A4FU77;B4E150;B4E0P5;Q9UNV9;A2RRQ7;Q7L5W4;Q9P172 O75643 2010 2026 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 2.5954E-07 70.96 1 0.72729 0.94635 NaN 1 Median 0.72729 0.94635 NaN 1 0 Median NaN NaN NaN 0 0 Median 20388000 10244000 10145000 20388000 10244000 10145000 0 0 0 3517 1206 3605 12647 19135 19135 1 FCQCSSECQNRFPGCR DSSCPCVIAQNFCEKFCQCSSECQNRFPGC CQCSSECQNRFPGCRCKAQCNTKQCPCYLA K F C C R C 0 2 1 0 4 2 1 1 0 0 0 0 0 2 1 2 0 0 0 0 0 0 16 1 2091.8132 A0A090N8E9;Q15910;S4S3R8;Q75MP9;Q75MQ0 A0A090N8E9 551 566 EZH2 Histone-lysine N-methyltransferase EZH2 yes no 3 0.024726 23.481 1 0.63882 0.84574 NaN 1 Median 0.63882 0.84574 NaN 1 0 Median NaN NaN NaN 0 0 Median 6660000 4143800 2516200 6660000 4143800 2516200 0 0 0 3518 381 3606 12648 19136 19136 1 FCSDCIVTALR DMLKNTMTTKECLHRFCSDCIVTALRSGNK CLHRFCSDCIVTALRSGNKECPTCRKKLVS R F C L R S 1 1 0 1 2 0 0 0 0 1 1 0 0 1 0 1 1 0 0 1 0 0 11 0 1340.6217 Q06587;B4DVB5;A0A024RCR9 Q06587 68 78 RING1 E3 ubiquitin-protein ligase RING1 yes no 2 0.0025827 62.303 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3519 1446 3607 12649 19137 19137 1 FCSSSCITAYK SGQCHMLQIEGQSKKFCSSSCITAYKQKSA QSKKFCSSSCITAYKQKSAKITPCALCKSL K F C Y K Q 1 0 0 0 2 0 0 0 0 1 0 1 0 1 0 3 1 0 1 0 0 0 11 0 1322.5635 Q5VZL5;H7C1I7 Q5VZL5 512 522 ZMYM4 Zinc finger MYM-type protein 4 yes no 2 0.00017469 86.624 1 0.67418 0.86379 NaN 1 Median 0.67418 0.86379 NaN 1 0 Median NaN NaN NaN 0 0 Median 4373000 1887000 2486000 4373000 1887000 2486000 0 0 0 3520 1580 3608 12650 19138 19138 1 FCTGLTQIETLFK ISMQKGGNMKEVFTRFCTGLTQIETLFKSK TRFCTGLTQIETLFKSKDYEFMWNPHLGYI R F C F K S 0 0 0 0 1 1 1 1 0 1 2 1 0 2 0 0 3 0 0 0 0 0 13 0 1556.7909 V9HWH2;V9HW77;A0A0S2Z471;P12277 V9HWH2 253 265 HEL-S-29;HEL-211;CKB Creatine kinase B-type yes no 2 0.0024325 89.9 2 0.61187 0.78977 17.994 2 Median 0.61187 0.78977 17.994 2 0 Median NaN NaN NaN 0 0 Median 8850300 5340200 3510100 8850300 5340200 3510100 0 0 0 3521 460 3609 12651;12652 19139;19140 19139 2 FCVTWNTNSR TMLRLRRDQKEALLRFCVTWNTNSRHCHEA EALLRFCVTWNTNSRHCHEAQAVLGVLLRR R F C S R H 0 1 2 0 1 0 0 0 0 0 0 0 0 1 0 1 2 1 0 1 0 0 10 0 1283.5717 Q12788;J3KNP2;A0JLS5 Q12788 717 726 TBL3 Transducin beta-like protein 3 yes no 2 0.0018847 74.269 2 0.44367 0.61919 10.183 2 Median NaN NaN NaN 0 0 Median 0.44367 0.61919 10.183 2 0 Median 14767000 9966900 4800600 0 0 0 14767000 9966900 4800600 3522 1456 3610 12653;12654 19141;19142 19142 2 FDAGELITQR LPSITTEILKSVVARFDAGELITQRELVSR SVVARFDAGELITQRELVSRQVSDDLTERA R F D Q R E 1 1 0 1 0 1 1 1 0 1 1 0 0 1 0 0 1 0 0 0 0 0 10 0 1148.5826 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0;C9JW96;C9JZ20;E7ESE2;E9PCW0;Q9BSE8 Q6PUJ7 134 143 HEL-S-54e;PHB;ZNF607 Prohibitin yes no 2 2.2072E-05 120.31 4 0.59562 0.82213 14.324 4 Median 0.59562 0.82213 14.324 4 0 Median NaN NaN NaN 0 0 Median 775910000 472200000 303710000 775910000 472200000 303710000 0 0 0 3523 600 3611 12655;12656;12657;12658 19143;19144;19145;19146;19147;19148;19149 19148 7 FDASFFGVHPK YGLPRRSGKLKDLSRFDASFFGVHPKQAHT DLSRFDASFFGVHPKQAHTMDPQLRLLLEV R F D P K Q 1 0 0 1 0 0 0 1 1 0 0 1 0 3 1 1 0 0 0 1 0 0 11 0 1250.6084 A0A0U1RQF0;P49327;A0A0U1RRG3 A0A0U1RQF0 60 70 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 0.0022943 67.563 3 0.71733 0.92415 37.216 2 Median 0.71733 0.92415 37.216 2 0 Median NaN NaN NaN 0 0 Median 18732000 13447000 5284800 18732000 13447000 5284800 0 0 0 3524 486 3612 12659;12660;12661 19150;19151;19152 19152 3 FDDAVVQSDMK PTNTVFDAKRLIGRRFDDAVVQSDMKHWPF IGRRFDDAVVQSDMKHWPFMVVNDAGRPKV R F D M K H 1 0 0 3 0 1 0 0 0 0 0 1 1 1 0 1 0 0 0 2 0 0 11 0 1253.5598 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;Q53HF2;E9PN89;E9PNE6;B4DTX2;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;A4D111 V9HW22 78 88 HEL-S-72p;HSPA8;LOC401308 Heat shock cognate 71 kDa protein yes no 2 0.0040209 61.765 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2564300 2564300 0 0 0 0 2564300 2564300 0 3525 1253 3613 12662;12663 19153;19154 19153 493 2 FDDDVVSR YVVYLNPKGDGKWCKFDDDVVSRCTKEEAI GDGKWCKFDDDVVSRCTKEEAIEHNYGGHD K F D S R C 0 1 0 3 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 8 0 951.42977 Q6U8A4;Q93009;B7ZAX6;B7Z855;H3BND8;B7Z7T5;F5H2X1;B7Z842 Q6U8A4 490 497 USP7 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 7 yes no 2 0.030723 77.318 2 0.44006 0.58914 22.397 2 Median 0.44006 0.58914 22.397 2 0 Median NaN NaN NaN 0 0 Median 10211000 6859900 3351500 10211000 6859900 3351500 0 0 0 3526 1600 3614 12664;12665 19155;19156 19156 2 FDDGAGGDNEVQR CLIFFDEIDAIGGARFDDGAGGDNEVQRTM ARFDDGAGGDNEVQRTMLELINQLDGFDPR R F D Q R T 1 1 1 3 0 1 1 3 0 0 0 0 0 1 0 0 0 0 0 1 0 0 13 0 1378.5749 A0A140VK70;P35998;Q75L23 A0A140VK70 285 297 PSMC2 26S protease regulatory subunit 7 yes no 2 1.9687E-16 137.89 4 2 0.38864 0.54313 144.24 6 Median 0.35102 0.47734 16.424 4 0 Median 5.5903 7.7609 10.17 2 0 Median 39356000 21235000 18120000 25232000 18556000 6676000 14124000 2679600 11444000 3527 510 3615 12666;12667;12668;12669;12670;12671 19157;19158;19159;19160;19161;19162;19163;19164;19165;19166;19167 19161 11 FDDPLLGPR MNRGIKDLSKVKLMRFDDPLLGPRRVPVLG KVKLMRFDDPLLGPRRVPVLGKEYTEKTPI R F D P R R 0 1 0 2 0 0 0 1 0 0 2 0 0 1 2 0 0 0 0 0 0 0 9 0 1028.5291 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3;Q9NPU8;Q9HAM7;B3KXA9 B4E266 1072 1080 LARS;DKFZp762P233 Leucine--tRNA ligase, cytoplasmic yes no 2 0.0057662 75.738 2 2 0.49352 0.68874 3.3088 2 Median 0.49352 0.68874 3.3088 2 0 Median NaN NaN NaN 0 0 Median 19783000 8776100 11007000 14237000 8776100 5460800 5545800 0 5545800 3528 732 3616 12672;12673;12674;12675 19168;19169;19170;19171;19172;19173 19171 6 FDEFDEAIDEAIEDDIK LERRSTRTRKCISYRFDEFDEAIDEAIEDD EFDEAIDEAIEDDIKEADGGGVGRGKDIST R F D I K E 2 0 0 5 0 0 4 0 0 3 0 1 0 2 0 0 0 0 0 0 0 0 17 0 2012.8739 Q96T23;H0YDG9 Q96T23 1023 1039 RSF1 Remodeling and spacing factor 1 yes no 2 1.0386E-25 176.25 4 0.62119 0.78506 12.797 4 Median 0.62119 0.78506 12.797 4 0 Median NaN NaN NaN 0 0 Median 23448000 14047000 9401100 23448000 14047000 9401100 0 0 0 3529 1702 3617 12676;12677;12678;12679 19174;19175;19176;19177;19178;19179;19180;19181;19182;19183 19175 10 FDEISFVNFAR ERGFIYVHKPPVHIRFDEISFVNFARGTTT VHIRFDEISFVNFARGTTTTRSFDFEIETK R F D A R G 1 1 1 1 0 0 1 0 0 1 0 0 0 3 0 1 0 0 0 1 0 0 11 0 1343.651 A0A024R4Z6;Q08945 A0A024R4Z6 371 381 SSRP1 FACT complex subunit SSRP1 yes no 2 3.9592E-34 224.36 4 3 0.78351 1.0886 10.264 7 Median 0.7757 1.0699 1.7867 4 0 Median 0.78791 1.3091 10.509 3 0 Median 968830000 550260000 418570000 714290000 406160000 308130000 254540000 144100000 110440000 3530 132 3618 12680;12681;12682;12683;12684;12685;12686 19184;19185;19186;19187;19188;19189;19190;19191;19192;19193;19194;19195;19196;19197 19184 14 FDETEQALANER KIIKKSSGFSGKGFKFDETEQALANERKKL GFKFDETEQALANERKKLQKAALGLQDSDD K F D E R K 2 1 1 1 0 1 3 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 12 0 1421.6423 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6 A8K6X3 780 791 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.0093764 43.512 1 0.67702 0.88496 NaN 1 Median 0.67702 0.88496 NaN 1 0 Median NaN NaN NaN 0 0 Median 7469000 3416800 4052200 7469000 3416800 4052200 0 0 0 3531 424 3619 12687 19198;19199 19198 2 FDHVPLATPNGDVLIR IPGAGEIIIADNIIKFDHVPLATPNGDVLI DHVPLATPNGDVLIRDLNFEVRSGANVLIC K F D I R D 1 1 1 2 0 0 0 1 1 1 2 0 0 1 2 0 1 0 0 2 0 0 16 0 1762.9366 B4DZ22;B4DL07;P28288 B4DZ22 369 384 ABCD3 ATP-binding cassette sub-family D member 3 yes no 3 0.028941 19.715 1 0.4308 0.57659 NaN 1 Median 0.4308 0.57659 NaN 1 0 Median NaN NaN NaN 0 0 Median 7404700 4478800 2926000 7404700 4478800 2926000 0 0 0 3532 823 3620 12688 19200 19200 1 FDILCVVR TFSENVDLTEPIISRFDILCVVRDTVDPVQ TEPIISRFDILCVVRDTVDPVQDEMLARFV R F D V R D 0 1 0 1 1 0 0 0 0 1 1 0 0 1 0 0 0 0 0 2 0 0 8 0 1020.5426 B4DSV5;B3KXZ4;H0Y8E6;P49736;B7Z8Z6;Q9BWF4 B4DSV5 527 534 MCM2 DNA helicase;DNA replication licensing factor MCM2 yes no 2 0.0006893 91.906 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6970600 6970600 0 6970600 6970600 0 0 0 0 3533 790 3621 12689;12690;12691 19201;19202;19203 19203 3 FDLALAATEAR HRYFSYLSKVGDKMRFDLALAATEARQCSD DKMRFDLALAATEARQCSDLLSQAQYHVAR R F D A R Q 4 1 0 1 0 0 1 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 11 0 1176.6139 A8K6X9;Q6PD62 A8K6X9 805 815 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2 0.0058896 85.355 3 0.63978 0.87579 4.2188 2 Median 0.63978 0.87579 4.2188 2 0 Median NaN NaN NaN 0 0 Median 17745000 8609300 9135400 17745000 8609300 9135400 0 0 0 3534 629 3622 12692;12693;12694 19204;19205;19206;19207 19207 4 FDLIGLEGR RATDVHPLQRIDMGRFDLIGLEGRVSRYEA RIDMGRFDLIGLEGRVSRYEADTFLPRHRL R F D G R V 0 1 0 1 0 0 1 2 0 1 2 0 0 1 0 0 0 0 0 0 0 0 9 0 1018.5447 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2;G1UI29;A0A087X0E3;B3KN63 A0A0A0MS59 749 757 SRCAP Helicase SRCAP yes no 2 0.03123 52.255 1 0.41874 0.57119 NaN 1 Median 0.41874 0.57119 NaN 1 0 Median NaN NaN NaN 0 0 Median 3089200 1915000 1174200 3089200 1915000 1174200 0 0 0 3535 394 3623 12695 19208 19208 1 FDLMYAK NTTAIAEAWARLDHKFDLMYAKRAFVHWYV AWARLDHKFDLMYAKRAFVHWYVGEGMEEG K F D A K R 1 0 0 1 0 0 0 0 0 0 1 1 1 1 0 0 0 0 1 0 0 0 7 0 886.42588 B3KT06;P68363;B3KPS3;A8JZY9;B4DDU2;B4DN58;C9J2C0;Q7Z3M3;Q9NY65;V9GZ17;Q15670;A6NHL2;Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;Q8N532;P68366;Q71U36;B4DQK4;Q1ZYQ1;Q13748;Q9UQM3;Q6PEY2 B3KT06 360 366 TUBA1B;TUBA8;DKFZp686L04275;TUBAL3;TUBA1C;TUBA4A;TUBA1A;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-8 chain;Tubulin alpha chain-like 3;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 2 0.044898 40.203 1 2.9558 4.4946 NaN 1 Median NaN NaN NaN 0 0 Median 2.9558 4.4946 NaN 1 0 Median 12144000 3133700 9010700 0 0 0 12144000 3133700 9010700 3536 777;1422;1607;1056 3624 12696 19209 19209 1 FDLQNPSR LGAAYKYKNEQGWRRFDLQNPSRMDRNVEM NEQGWRRFDLQNPSRMDRNVEMFMNIEKTL R F D S R M 0 1 1 1 0 1 0 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 8 0 975.47739 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q05BW5 Q58EY4 137 144 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 2 0.00043601 104.37 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3298900 3298900 0 0 0 0 3298900 3298900 0 3537 1549 3625 12697 19210 19210 1 FDNIGMNAMANK AEEFGHLLDENMGSKFDNIGMNAMANKDNA GSKFDNIGMNAMANKDNASLKQLRWEAERD K F D N K D 2 0 3 1 0 0 0 1 0 1 0 1 2 1 0 0 0 0 0 0 0 0 12 0 1324.5904 Q03701 Q03701 994 1005 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 2 0.00091755 62.201 2 0.50453 0.761 2.0845 2 Median NaN NaN NaN 0 0 Median 0.50453 0.761 2.0845 2 0 Median 25374000 17250000 8124500 0 0 0 25374000 17250000 8124500 3538 1441 3626 12698;12699 19211;19212 19212 648;649 2 FDPNEIK ______________________________ ______________________________ K F D I K V 0 0 1 1 0 0 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 7 0 861.42323 P30050;Q59FI9;D3DS95;Q76P68 P30050 5 11 RPL12;hCG_21173;cICK0721Q.2 60S ribosomal protein L12 yes no 2 0.040446 79.451 2 0.66001 0.82571 8.0711 2 Median 0.66001 0.82571 8.0711 2 0 Median NaN NaN NaN 0 0 Median 62074000 36137000 25937000 62074000 36137000 25937000 0 0 0 3539 1307 3627 12700;12701 19213;19214 19214 2 FDQLFDDESDPFEVLK PGHLQEGFGCVVTNRFDQLFDDESDPFEVL DQLFDDESDPFEVLKAAENKKKEAGGGGVG R F D L K A 0 0 0 4 0 1 2 0 0 0 2 1 0 3 1 1 0 0 0 1 0 0 16 0 1942.8836 Q63HR1;Q5VU21;D3DQ69;Q8NC51;D3DQ70 Q63HR1 17 32 DKFZp686P17171;SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 2 2.9648E-09 93.206 3 0.65037 0.82666 11.215 2 Median 0.65037 0.82666 11.215 2 0 Median NaN NaN NaN 0 0 Median 23959000 14327000 9632100 23959000 14327000 9632100 0 0 0 3540 1578 3628 12702;12703;12704 19215;19216;19217;19218;19219 19216 5 FDSEPSAVALELPTR HDDGNIDLESDSFLKFDSEPSAVALELPTR FDSEPSAVALELPTRAFGPSETNESPAVVL K F D T R A 2 1 0 1 0 0 2 0 0 0 2 0 0 1 2 2 1 0 0 1 0 0 15 0 1630.8203 P18583;D3DSF7 P18583 158 172 SON Protein SON yes no 2 7.466E-08 125.54 4 0.57528 0.77674 6.2608 3 Median 0.57528 0.77674 6.2608 3 0 Median NaN NaN NaN 0 0 Median 19963000 13387000 6575900 19963000 13387000 6575900 0 0 0 3541 1282 3629 12705;12706;12707;12708 19220;19221;19222;19223;19224 19222 5 FDTGNLCMVTGGANLGR IQIDLETGKITDFIKFDTGNLCMVTGGANL TGNLCMVTGGANLGRIGVITNRERHPGSFD K F D G R I 1 1 2 1 1 0 0 4 0 0 2 0 1 1 0 0 2 0 0 1 0 0 17 0 1781.8189 B2R491;P62701;Q96IR1;Q53HV1 B2R491 175 191 RPS4X 40S ribosomal protein S4;40S ribosomal protein S4, X isoform yes no 2 9.0155E-19 152.4 8 2 0.74258 0.98703 22.501 10 Median 0.75234 1.003 8.587 8 0 Median 0.36814 0.59611 1.2679 2 0 Median 232510000 150990000 81515000 113960000 65077000 48885000 118540000 85914000 32630000 3542 681 3630;3631 12709;12710;12711;12712;12713;12714;12715;12716;12717;12718 19225;19226;19227;19228;19229;19230;19231;19232;19233;19234;19235;19236;19237;19238 19238 234 14 FDTIYQILLK STRKIKEEEKRVNSKFDTIYQILLKKKSEI RVNSKFDTIYQILLKKKSEIQTLKEEIEQS K F D L K K 0 0 0 1 0 1 0 0 0 2 2 1 0 1 0 0 1 0 1 0 0 0 10 0 1252.7067 Q14258 Q14258 274 283 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 no no 2 1.2943E-06 141.52 2 0.60013 0.75793 10.911 2 Median 0.60013 0.75793 10.911 2 0 Median NaN NaN NaN 0 0 Median 5627800 3185700 2442100 5627800 3185700 2442100 0 0 0 3543 1485 3632 12719;12720 19239;19240;19241 19239 3 FDTPFLPK SLKKQKLRAESDFVKFDTPFLPKPLFFRRA AESDFVKFDTPFLPKPLFFRRAKSSTATHP K F D P K P 0 0 0 1 0 0 0 0 0 0 1 1 0 2 2 0 1 0 0 0 0 0 8 0 963.50657 Q14684 Q14684 645 652 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 0.00012747 130.04 4 2 0.75036 1.0841 8.1366 5 Median 0.82586 1.0609 10.979 3 0 Median 0.7298 1.1024 2.3593 2 0 Median 72792000 35873000 36919000 35847000 15024000 20823000 36945000 20849000 16096000 3544 1493 3633 12721;12722;12723;12724;12725;12726 19242;19243;19244;19245;19246;19247;19248 19244 7 FDTQLFHTIGVEFLNK GVGKSSLMNRYVTNKFDTQLFHTIGVEFLN DTQLFHTIGVEFLNKDLEVDGHFVTMQIWD K F D N K D 0 0 1 1 0 1 1 1 1 1 2 1 0 3 0 0 2 0 0 1 0 0 16 0 1907.9781 A0A024RBV5;P51151 A0A024RBV5 32 47 RAB9A Ras-related protein Rab-9A yes no 3 7.076E-09 118.19 5 0.53045 0.68169 42.532 4 Median 0.53045 0.68169 42.532 4 0 Median NaN NaN NaN 0 0 Median 33755000 23206000 10549000 33755000 23206000 10549000 0 0 0 3545 283 3634 12727;12728;12729;12730;12731 19249;19250;19251;19252;19253;19254 19250 6 FDVQLK NLTGRLNKCGVISPRFDVQLKDLEKWQNNL NKCGVISPRFDVQLKDLEKWQNNLLPSRQF R F D L K D 0 0 0 1 0 1 0 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 6 0 748.41194 B2R4W8;P62244;I3L3P7;A8K7H3;H3BVC7 B2R4W8 79 84 hCG_1994130;RPS15A 40S ribosomal protein S15a yes no 2 0.0325 116 1 0.89709 1.1607 NaN 1 Median 0.89709 1.1607 NaN 1 0 Median NaN NaN NaN 0 0 Median 293020000 157980000 135040000 293020000 157980000 135040000 0 0 0 3546 688 3635 12732 19255 19255 1 FDYAFDDSAPNEMVYR QKVDLTRYLENQTFRFDYAFDDSAPNEMVY DYAFDDSAPNEMVYRFTARPLVETIFERGM R F D Y R F 2 1 1 3 0 0 1 0 0 0 0 0 1 2 1 1 0 0 2 1 0 0 16 0 1938.8094 B0AZS5;D6R9M0;O00139;B4DM85 B0AZS5 230 245 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A no no 2 8.1215E-07 73.435 1 0.94074 1.2547 NaN 1 Median NaN NaN NaN 0 0 Median 0.94074 1.2547 NaN 1 0 Median 5024500 1580000 3444400 0 0 0 5024500 1580000 3444400 3547 664;1163 3636 12733 19256 19256 232 1 FEAHPNDLYVEGLPENIPFR EALGSTEAKAVPYQKFEAHPNDLYVEGLPE NDLYVEGLPENIPFRSPSWYGIPRLEKIIQ K F E F R S 1 1 2 1 0 0 3 1 1 1 2 0 0 2 3 0 0 0 1 1 0 0 20 0 2356.1488 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;B4DRA9 X5D2J9 454 473 GTF2I General transcription factor II-I yes no 3 2.4506E-06 98.804 4 2 0.56596 0.7713 76.55 5 Median 0.4684 0.62411 15.139 3 0 Median 1.7895 2.5984 5.5578 2 0 Median 61827000 31999000 29829000 47546000 27848000 19699000 14281000 4151100 10130000 3548 651 3637 12734;12735;12736;12737;12738;12739 19257;19258;19259;19260;19261;19262;19263;19264;19265;19266 19257 10 FEDPRDAEDAIYGR ELKNRHGLVPFAFVRFEDPRDAEDAIYGRN RFEDPRDAEDAIYGRNGYDYGQCRLRVEFP R F E G R N 2 2 0 3 0 0 2 1 0 1 0 0 0 1 1 0 0 0 1 0 0 0 14 1 1652.7431 Q13242;A8K3M9;H0YIB4;S4R3G0;B4DFT9 Q13242 59 72 SRSF9 Serine/arginine-rich splicing factor 9 yes no 3 0.0026083 49.988 3 0.65723 0.87368 4.3827 3 Median 0.65723 0.87368 4.3827 3 0 Median NaN NaN NaN 0 0 Median 29263000 16989000 12274000 29263000 16989000 12274000 0 0 0 3549 1467 3638 12740;12741;12742 19267;19268;19269 19269 3 FEDQPEGIDLEVVTESTGK VITEGVKPTLSELEKFEDQPEGIDLEVVTE PEGIDLEVVTESTGKEREHNFQPGDNVEVC K F E G K E 0 0 0 2 0 1 4 2 0 1 1 1 0 1 1 1 2 0 0 2 0 0 19 0 2091.9848 B4DZJ7;O00267;B4E0Q4;B4DJK4 B4DZJ7 374 392 SUPT5H Transcription elongation factor SPT5 yes no 2 7.4565E-11 123.29 4 1.1438 1.4964 60.312 2 Median 1.1438 1.4964 60.312 2 0 Median NaN NaN NaN 0 0 Median 10317000 5472600 4844500 10317000 5472600 4844500 0 0 0 3550 879 3639 12743;12744;12745;12746 19270;19271;19272;19273;19274 19271 5 FEDSPSYVK ELLTESSKATNVCTRFEDSPSYVKWGKLRD TNVCTRFEDSPSYVKWGKLRDYQVRGLNWL R F E V K W 0 0 0 1 0 0 1 0 0 0 0 1 0 1 1 2 0 0 1 1 0 0 9 0 1070.492 O60264;B7ZAX9;B4DZC0;Q4W5G3 O60264 168 176 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 1.5354E-05 124.98 5 2 2.1014 2.9797 13.56 2 Median 2.1801 2.7073 NaN 1 0 Median 2.0256 3.2796 NaN 1 0 Median 201380000 30125000 171250000 117700000 13726000 103970000 83676000 16398000 67278000 3551 1189 3640 12747;12748;12749;12750;12751;12752;12753 19275;19276;19277;19278;19279;19280;19281;19282 19278 8 FEEEELQR MDLVGLGLHPLFSSRFEEEELQRLRLVDSI HPLFSSRFEEEELQRLRLVDSIKNYRSRAT R F E Q R L 0 1 0 0 0 1 4 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 8 0 1078.4931 Q8TDD1;H0YHH7 Q8TDD1 552 559 DDX54 ATP-dependent RNA helicase DDX54 yes no 2 0.00414 98.299 2 0.77799 1.0373 19.11 2 Median 0.77799 1.0373 19.11 2 0 Median NaN NaN NaN 0 0 Median 31695000 15732000 15962000 31695000 15732000 15962000 0 0 0 3552 1658 3641 12754;12755 19283;19284 19284 2 FEELCSDLFR LFEGIDFYTSITRARFEELCSDLFRSTLEP ITRARFEELCSDLFRSTLEPVEKALRDAKL R F E F R S 0 1 0 1 1 0 2 0 0 0 2 0 0 2 0 1 0 0 0 0 0 0 10 0 1314.5914 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DI39;B4DWK5;B4DNT8;B4DFN9;B4DVU9;B4E1S9;B4E388;V9GZ37;B3KTT5;B4DNV4;Q53FC7;B3KSM6;B2R6X5;P17066;B4DHP5;P48741 A8K5I0 302 311 HEL-S-103;HSPA1B;HSPA1A;HSPA6;HSPA7 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 no no 2 0.00026662 104.2 3 0.6763 0.93274 21.704 3 Median 0.6763 0.93274 21.704 3 0 Median NaN NaN NaN 0 0 Median 12174000 6508100 5665700 12174000 6508100 5665700 0 0 0 3553 439;701 3642 12756;12757;12758 19285;19286;19287;19288 19288 2 FEELNADLFR LYEGIDFYTSITRARFEELNADLFRGTLDP ITRARFEELNADLFRGTLDPVEKALRDAKL R F E F R G 1 1 1 1 0 0 2 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 10 0 1252.6088 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;Q53HF2;E9PN89;E9PNE6;B4E1Q1;A8K7Q2 V9HW22 302 311 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein no no 2 4.0454E-05 113.18 2 2 0.85559 1.2223 62.585 4 Median 0.52713 0.71777 0.094121 2 0 Median 1.3962 2.1213 2.7828 2 0 Median 58918000 29202000 29715000 22210000 14478000 7731400 36708000 14724000 21984000 3554 1253 3643 12759;12760;12761;12762 19289;19290;19291;19292;19293;19294;19295 19295 7 FEEPDSASVK FLKKQEDFEQKYNFRFEEPDSASVKTYPRS KYNFRFEEPDSASVKTYPRSIASSVRRKDE R F E V K T 1 0 0 1 0 0 2 0 0 0 0 1 0 1 1 2 0 0 0 1 0 0 10 0 1107.5084 Q8N9T8;A0A024R7C4;B4DUT2;B4DUY9;B7ZLF4 Q8N9T8 302 311 KRI1;FLJ12949 Protein KRI1 homolog yes no 2 0.00096618 123.21 5 2 0.62352 0.85246 4.9557 4 Median 0.6948 0.87357 2.2621 2 0 Median 0.5491 0.81682 4.8419 2 0 Median 35072000 18353000 16719000 17594000 6526600 11068000 17478000 11827000 5650900 3555 1645 3644 12763;12764;12765;12766;12767;12768;12769 19296;19297;19298;19299;19300;19301;19302;19303;19304;19305;19306;19307;19308 19297 13 FEEYGPVIECDIVK GNISPACTNKELRAKFEEYGPVIECDIVKD KFEEYGPVIECDIVKDYAFVHMERAEDAVE K F E V K D 0 0 0 1 1 0 3 1 0 2 0 1 0 1 1 0 0 0 1 2 0 0 14 0 1696.8018 A8K9U0;Q9BWF3;E9PB51;Q9BQ04;E9PLB0;E9PM61;D6R9K7;U3KQD5;J3QRR5 A8K9U0 98 111 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 2 0.0054611 73.848 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6960700 6960700 0 6960700 6960700 0 0 0 0 3556 650 3645 12770;12771;12772 19309;19310;19311 19311 3 FEGAIYR ISALEEAKKGLAAIKFEGAIYRKDIGFRAI KKGLAAIKFEGAIYRKDIGFRAIAFLQQPR K F E Y R K 1 1 0 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 1 0 0 0 7 0 854.42865 Q3B7A7;Q59HH3;P22102;Q15374 Q3B7A7 412 418 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 0.002017 118.01 2 1 0.25502 0.34958 NaN 1 Median 0.25502 0.34958 NaN 1 0 Median NaN NaN NaN 0 0 Median 15588000 14325000 1262800 15588000 14325000 1262800 0 0 0 3557 1289 3646 12773;12774;12775 19312;19313;19314 19313 3 FEGAVIR SFIKGMFNSALEVAKFEGAVIRTVSGIRGQ NSALEVAKFEGAVIRTVSGIRGQIKKALRA K F E I R T 1 1 0 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 7 0 790.43374 Q14692 Q14692 1056 1062 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.010532 107.74 3 1 1.1668 1.2851 15.083 4 Linear 1.1862 1.2854 14.218 3 0 Plateau 0.80208 1.1506 NaN 1 0 Median 93051000 49038000 44013000 82192000 42985000 39207000 10860000 6053200 4806700 3558 1495 3647 12776;12777;12778;12779 19315;19316;19317;19318;19319;19320 19317 6 FEIVYNLLSLR LVDLTAVDVPTRQNRFEIVYNLLSLRFNSR RQNRFEIVYNLLSLRFNSRIRVKTYTDELT R F E L R F 0 1 1 0 0 0 1 0 0 1 3 0 0 1 0 1 0 0 1 1 0 0 11 0 1365.7656 Q9UF24;Q53FM7;O75489 Q9UF24 52 62 DKFZp586K0821;NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes no 2 0.016198 88.134 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 866480 866480 0 866480 866480 0 0 0 0 3559 1202 3648 12780 19321;19322 19321 2 FELQHGTEEQQEEVR KIDSDLGDAWAFFYKFELQHGTEEQQEEVR FELQHGTEEQQEEVRKRCESAEPRHGELWC K F E V R K 0 1 0 0 0 3 5 1 1 0 1 0 0 1 0 0 1 0 0 1 0 0 15 0 1857.8493 O94906 O94906 884 898 PRPF6 Pre-mRNA-processing factor 6 yes yes 3 1.1785E-10 143.58 3 0.33289 0.45295 NaN 1 Median 0.33289 0.45295 NaN 1 0 Median NaN NaN NaN 0 0 Median 18589000 17334000 1255800 18589000 17334000 1255800 0 0 0 3560 1212 3649 12781;12782;12783 19323;19324;19325 19323 3 FELQHGTEEQQEEVRK KIDSDLGDAWAFFYKFELQHGTEEQQEEVR ELQHGTEEQQEEVRKRCESAEPRHGELWCA K F E R K R 0 1 0 0 0 3 5 1 1 0 1 1 0 1 0 0 1 0 0 1 0 0 16 1 1985.9443 O94906 O94906 884 899 PRPF6 Pre-mRNA-processing factor 6 yes yes 3 0.00086951 75.998 4 0.67949 0.91706 28.357 4 Median 0.67949 0.91706 28.357 4 0 Median NaN NaN NaN 0 0 Median 29014000 17161000 11853000 29014000 17161000 11853000 0 0 0 3561 1212 3650 12784;12785;12786;12787 19326;19327;19328;19329;19330 19327 5 FELSCYSLAPQIK YVSHGATGKGNDQVRFELSCYSLAPQIKVI VRFELSCYSLAPQIKVIAPWRMPEFYNRFK R F E I K V 1 0 0 0 1 1 1 0 0 1 2 1 0 1 1 2 0 0 1 0 0 0 13 0 1554.7752 Q5T6L4;A8KAP9;P00966;A0A0S2Z3D8;Q5T6L6;A0A0S2Z3B6 Q5T6L4 128 140 ASS;ASS1 Argininosuccinate synthase yes no 2 0.00021622 104.52 3 1 0.63902 0.81243 NaN 1 Median 0.63902 0.81243 NaN 1 0 Median NaN NaN NaN 0 0 Median 12943000 3209800 9732800 9984200 3209800 6774400 2958400 0 2958400 3562 655 3651 12788;12789;12790;12791 19331;19332;19333;19334;19335 19332 5 FEMEQNLR DIDNTRMTLDDFRIKFEMEQNLRQGVDADI LDDFRIKFEMEQNLRQGVDADINGLRQVLD K F E L R Q 0 1 1 0 0 1 2 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 8 0 1065.4913 CON__P35527;P35527;K7EQQ3 CON__P35527 243 250 KRT9 Keratin, type I cytoskeletal 9 yes no 2 0.0010361 101.33 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34151000 34151000 0 13457000 13457000 0 20693000 20693000 0 + 3563 963 3652 12792;12793;12794;12795 19336;19337;19338;19339 19338 339 4 FENAAAGNKPEAVEVTFADFDGVLYHISNPNGDK LEVNNRIIEETLALKFENAAAGNKPEAVEV FDGVLYHISNPNGDKTKVMVSISLKFYKEL K F E D K T 5 0 4 3 0 0 3 3 1 1 1 2 0 3 2 1 1 0 1 3 0 0 34 1 3635.7169 Q53R19;O15144;C9JTV5;G5E9J0 Q53R19 19 52 ARPC2 Actin-related protein 2/3 complex subunit 2 yes no 4 3.5193E-05 48.106 2 1.5045 1.828 34.417 2 Median 1.5045 1.828 34.417 2 0 Median NaN NaN NaN 0 0 Median 4723700 1660400 3063300 4723700 1660400 3063300 0 0 0 3564 1177 3653 12796;12797 19340;19341 19340 2 FEPLVR FTSKALNMAIPGGPKFEPLVRDINLQDEDW NMAIPGGPKFEPLVRDINLQDEDWNEFNDI K F E V R D 0 1 0 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 6 0 759.42792 Q6P2Q9;I3L0J9 Q6P2Q9 279 284 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.036589 101.72 3 0.52482 0.71008 17.136 2 Median 0.52482 0.71008 17.136 2 0 Median NaN NaN NaN 0 0 Median 41374000 30640000 10734000 41374000 30640000 10734000 0 0 0 3565 1592 3654 12798;12799;12800 19342;19343;19344 19344 3 FEPPQSDSDGQRR EERDERHKTKGRLSRFEPPQSDSDGQRRSM SRFEPPQSDSDGQRRSMDAPSRRNRSSGVL R F E R R S 0 2 0 2 0 2 1 1 0 0 0 0 0 1 2 2 0 0 0 0 0 0 13 1 1517.6859 O15042;E7ET15;B4DK81;E7EW00;H0Y8D9 O15042 231 243 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 3 0.030104 22.321 1 0.24435 0.32758 NaN 1 Median 0.24435 0.32758 NaN 1 0 Median NaN NaN NaN 0 0 Median 17816000 15911000 1904900 17816000 15911000 1904900 0 0 0 3566 1175 3655 12801 19345 19345 1 FEPQVDTEAEDMISAVK ENGLGKTDRKKEIVKFEPQVDTEAEDMISA PQVDTEAEDMISAVKSRRLLAIQAKKEREI K F E V K S 2 0 0 2 0 1 3 0 0 1 0 1 1 1 1 1 1 0 0 2 0 0 17 0 1907.8823 Q9UIG0 Q9UIG0 827 843 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 2.8242E-07 73.927 1 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47831000 0 47831000 4622700 0 4622700 43208000 0 43208000 3567 1786 3656;3657 12802;12803;12804;12805 19346;19347;19348;19349 19346 823 4 FEPYANPTK NEKRKEKNIKRGGNRFEPYANPTKRYRAFI KRGGNRFEPYANPTKRYRAFITNIPFDVKW R F E T K R 1 0 1 0 0 0 1 0 0 0 0 1 0 1 2 0 1 0 1 0 0 0 9 0 1065.5131 P52272;A0A087X0X3;M0R019;B4DEG4;M0R2T0;M0R0N3;M0QYQ7;M0R0Y6 P52272 61 69 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 0.027507 74.376 1 2 2.3518 3.4853 93.493 3 Median 0.56323 0.71314 NaN 1 0 Median 2.3989 3.5978 4.4962 2 0 Median 37592000 16877000 20715000 17137000 10744000 6392800 20455000 6133400 14322000 3568 1363 3658 12806;12807;12808 19350;19351;19352 19350 3 FESILPR ERGEEPGKSCGYSVRFESILPRPHASIMFC KSCGYSVRFESILPRPHASIMFCTVGVLLR R F E P R P 0 1 0 0 0 0 1 0 0 1 1 0 0 1 1 1 0 0 0 0 0 0 7 0 860.4756 Q08211;Q58F26;Q6PJK6 Q08211 475 481 DHX9 ATP-dependent RNA helicase A yes no 2 0.0016141 132.72 4 2 0.64743 0.88052 10.053 5 Median 0.65508 0.89509 1.6595 3 0 Median 0.50359 0.74948 4.4648 2 0 Median 174710000 112320000 62383000 144580000 92509000 52070000 30127000 19813000 10313000 3569 1448 3659 12809;12810;12811;12812;12813;12814 19353;19354;19355;19356;19357;19358;19359;19360;19361 19355 9 FESPEVAER IKMENGKSKGCGVVKFESPEVAERACRMMN GCGVVKFESPEVAERACRMMNGMKLSGREI K F E E R A 1 1 0 0 0 0 3 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 9 0 1062.4982 P52272;A0A087X0X3;Q59ES8;Q7KYM9;Q6P2D7;Q8TCM5 P52272 699 707 HNRNPM;ORF;HNRPM;DKFZp547H118 Heterogeneous nuclear ribonucleoprotein M yes no 2 1.2076E-05 128.69 1 2 2.4392 3.7759 122.89 3 Median 0.33661 0.4653 NaN 1 0 Median 2.4928 3.9064 4.8054 2 0 Median 105150000 53669000 51479000 49396000 37256000 12140000 55751000 16412000 39339000 3570 1363 3660 12815;12816;12817 19362;19363;19364;19365;19366 19363 5 FETFCLDPSLVTK TSSSQVKDNKPLVERFETFCLDPSLVTKQA ERFETFCLDPSLVTKQANLVHFPPGFQPIP R F E T K Q 0 0 0 1 1 0 1 0 0 0 2 1 0 2 1 1 2 0 0 1 0 0 13 0 1555.7592 Q9UHB9;B4DVI7;Q96K97 Q9UHB9 558 570 SRP68 Signal recognition particle subunit SRP68 yes no 2 5.2603E-05 101.39 2 0.22105 0.29028 NaN 1 Median 0.22105 0.29028 NaN 1 0 Median NaN NaN NaN 0 0 Median 6409700 5448400 961220 6409700 5448400 961220 0 0 0 3571 1784 3661 12818;12819 19367;19368;19369 19369 3 FETFQTITSYIK AFDQRHLDDINFDVRFETFQTITSYIKEMQ DVRFETFQTITSYIKEMQIVDVNYLIPVMH R F E I K E 0 0 0 0 0 1 1 0 0 2 0 1 0 2 0 1 3 0 1 0 0 0 12 0 1476.75 O75691 O75691 1450 1461 UTP20 Small subunit processome component 20 homolog yes yes 2 1.185E-07 148.56 4 2 0.91881 1.1846 4.9282 4 Median 0.92257 1.159 5.9815 3 0 Median 0.81307 1.2107 NaN 1 0 Median 48897000 19392000 29505000 35946000 15710000 20236000 12951000 3681500 9269800 3572 1207 3662 12820;12821;12822;12823;12824;12825 19370;19371;19372;19373;19374;19375 19370 6 FETLQAQAGK AKCSRAEAEAWYQTKFETLQAQAGKHGDDL WYQTKFETLQAQAGKHGDDLRNTRNEISEM K F E G K H 2 0 0 0 0 2 1 1 0 0 1 1 0 1 0 0 1 0 0 0 0 0 10 0 1091.5611 CON__P08729;Q96GE1;Q3KNV1;Q3B834;CON__Q3KNV1;P08729;B3KY79 CON__Q3KNV1 287 296 KRT7 Keratin, type II cytoskeletal 7 no no 2 2.9573E-05 101.64 3 1 0.38215 0.4911 NaN 1 Median 0.38215 0.4911 NaN 1 0 Median NaN NaN NaN 0 0 Median 79677000 57862000 21815000 79677000 57862000 21815000 0 0 0 + 3573 968;957 3663 12826;12827;12828;12829 19376;19377;19378;19379 19379 4 FEYLLK DPTYEEKMQTDRANRFEYLLKQTELFAHFI KMQTDRANRFEYLLKQTELFAHFIQPAAQK R F E L K Q 0 0 0 0 0 0 1 0 0 0 2 1 0 1 0 0 0 0 1 0 0 0 6 0 811.44799 O60264;B7ZAX9;B4DZC0;Q4W5G3 O60264 92 97 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 0.043465 77.72 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3574 1189 3664 12830 19380 19380 1 FFALVNALDEHLFPVR VAVSSIHTQDPYLDKFFALVNALDEHLFPV FALVNALDEHLFPVRIGDMRIMENNLENEL K F F V R I 2 1 1 1 0 0 1 0 1 0 3 0 0 3 1 0 0 0 0 2 0 0 16 0 1887.0043 Q96N67;A0A0U1RRC1;A0A0U1RQJ5 Q96N67 740 755 DOCK7 Dedicator of cytokinesis protein 7 yes no 3 0.014683 50.024 1 1.9221 2.5013 NaN 1 Median 1.9221 2.5013 NaN 1 0 Median NaN NaN NaN 0 0 Median 711250 221110 490140 711250 221110 490140 0 0 0 3575 1696 3665 12831 19381;19382 19382 2 FFAPALISVSLPVR MGMQPHLQALLSLYKFFAPALISVSLPVRK KFFAPALISVSLPVRKKIYFKNSENLWKTA K F F V R K 2 1 0 0 0 0 0 0 0 1 2 0 0 2 2 2 0 0 0 2 0 0 14 0 1515.8813 B4DZL4;A0A024RCG4;Q92674 B4DZL4 244 257 FSHPRH1;CENPI Centromere protein I yes no 2 2.254E-07 94.616 5 0.67755 0.90931 NaN 1 Median 0.67755 0.90931 NaN 1 0 Median NaN NaN NaN 0 0 Median 6584900 3827400 2757500 6584900 3827400 2757500 0 0 0 3576 294 3666 12832;12833;12834;12835;12836 19383;19384;19385;19386;19387;19388 19388 6 FFAPALISVSLPVRK MGMQPHLQALLSLYKFFAPALISVSLPVRK FFAPALISVSLPVRKKIYFKNSENLWKTAL K F F R K K 2 1 0 0 0 0 0 0 0 1 2 1 0 2 2 2 0 0 0 2 0 0 15 1 1643.9763 B4DZL4;A0A024RCG4;Q92674 B4DZL4 244 258 FSHPRH1;CENPI Centromere protein I yes no 3 0.0050979 59.709 2 0.61948 0.83753 25.891 2 Median 0.61948 0.83753 25.891 2 0 Median NaN NaN NaN 0 0 Median 4339500 2380500 1959000 4339500 2380500 1959000 0 0 0 3577 294 3667 12837;12838 19389;19390;19391 19390 3 FFDCDSLVCLCEFK SESVLAVAGDEEVIRFFDCDSLVCLCEFKA RFFDCDSLVCLCEFKAHENRVKDMFSFEIP R F F F K A 0 0 0 2 3 0 1 0 0 0 2 1 0 3 0 1 0 0 0 1 0 0 14 0 1838.7678 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 229 242 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 2 5.0677E-20 161.94 4 1.1949 1.4811 10.332 4 Median 1.1949 1.4811 10.332 4 0 Median NaN NaN NaN 0 0 Median 71625000 30899000 40726000 71625000 30899000 40726000 0 0 0 3578 478 3668 12839;12840;12841;12842 19392;19393;19394;19395;19396;19397;19398 19394 6 FFDDPMLLELAK TRRRKGLSEDVSISKFFDDPMLLELAKQDV ISKFFDDPMLLELAKQDVVLNYPM______ K F F A K Q 1 0 0 2 0 0 1 0 0 0 3 1 1 2 1 0 0 0 0 0 0 0 12 0 1437.7214 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;K7EP67 B4DZB1 903 914 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.019191 87.568 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3579 654 3669 12843 19399 19399 1 FFESFGDLSSADAILGNPK EALGRLLVVYPWTQRFFESFGDLSSADAIL FGDLSSADAILGNPKVKAHGKKVLDSFCEG R F F P K V 2 0 1 2 0 0 1 2 0 1 2 1 0 3 1 3 0 0 0 0 0 0 19 0 2013.9684 CON__Q3SX09 CON__Q3SX09 96 114 yes yes 2 8.1366E-08 132.31 2 0.7156 0.92782 NaN 1 Median 0.7156 0.92782 NaN 1 0 Median NaN NaN NaN 0 0 Median 26112000 23825000 2287100 26112000 23825000 2287100 0 0 0 + 3580 969 3670 12844;12845 19400;19401 19401 2 FFEVILIDPFHK RVLNSYWVGEDSTYKFFEVILIDPFHKAIR TYKFFEVILIDPFHKAIRRNPDTQWITKPV K F F H K A 0 0 0 1 0 0 1 0 1 2 1 1 0 3 1 0 0 0 0 1 0 0 12 0 1503.8126 A0A024R2Q4;P61313;E7EQV9;E7ENU7 A0A024R2Q4 129 140 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 2;3 9.983E-16 160.53 25 0.74849 0.94642 23.497 18 Median 0.74849 0.94642 23.497 18 0 Median NaN NaN NaN 0 0 Median 1578700000 944970000 633760000 1578700000 944970000 633760000 0 0 0 3581 92 3671 12846;12847;12848;12849;12850;12851;12852;12853;12854;12855;12856;12857;12858;12859;12860;12861;12862;12863;12864;12865;12866;12867;12868;12869;12870 19402;19403;19404;19405;19406;19407;19408;19409;19410;19411;19412;19413;19414;19415;19416;19417;19418;19419;19420;19421;19422;19423;19424;19425;19426;19427;19428;19429;19430;19431;19432;19433;19434;19435;19436;19437;19438;19439;19440 19421 39 FFGTAVTCLLSPHSQVLTAATQSLK LVRLQWDLGLGHLPRFFGTAVTCLLSPHSQ SPHSQVLTAATQSLKEILKECVAPHMADIG R F F L K E 3 0 0 0 1 2 0 1 1 0 4 1 0 2 1 3 4 0 0 2 0 0 25 0 2676.3945 B3KMR5;Q5JTH9;B3KY97 B3KMR5 416 440 RRP12 RRP12-like protein yes no 3 3.7823E-23 134.09 3 0.82732 1.0507 12.978 3 Median 0.82732 1.0507 12.978 3 0 Median NaN NaN NaN 0 0 Median 24492000 13750000 10742000 24492000 13750000 10742000 0 0 0 3582 756 3672 12871;12872;12873 19441;19442;19443;19444;19445;19446;19447 19443 7 FFHLAFEEEFGR DVTTTSTRIGKFEARFFHLAFEEEFGRVKG EARFFHLAFEEEFGRVKGHFGPINSVAFHP R F F G R V 1 1 0 0 0 0 3 1 1 0 1 0 0 4 0 0 0 0 0 0 0 0 12 0 1527.7147 Q9P1D9;Q5U0F4;Q53HU7;Q13347 Q9P1D9 17 28 EIF3I Eukaryotic translation initiation factor 3 subunit I yes no 3 0.010419 56.551 2 0.42953 0.60215 0.73612 2 Median 0.42953 0.60215 0.73612 2 0 Median NaN NaN NaN 0 0 Median 7374800 4815300 2559500 7374800 4815300 2559500 0 0 0 3583 1468 3673 12874;12875 19448;19449;19450 19449 3 FFLLENVR LVVSFLSYCDYYRPRFFLLENVRNFVSFKR CDYYRPRFFLLENVRNFVSFKRSMVLKLTL R F F V R N 0 1 1 0 0 0 1 0 0 0 2 0 0 2 0 0 0 0 0 1 0 0 8 0 1036.5706 A0A024R7E3;P26358;Q59FP7;B3KVA0;K7ENW7;I6L9H2 A0A024R7E3 1324 1331 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 no no 2 0.0085888 77.674 3 1 0.61036 0.81872 46.846 3 Plateau 0.38697 0.54449 0.6253 2 0 Median 0.93982 1.2256 NaN 1 0 Median 12496000 6327900 6168200 8396200 4616600 3779500 4099900 1711300 2388700 3584 176;1129 3674 12876;12877;12878;12879 19451;19452;19453;19454;19455 19453 5 FFLSLYGHK LLDCTVKIFYVDTLKFFLSLYGHKLPVICM YVDTLKFFLSLYGHKLPVICMDISHDGALI K F F H K L 0 0 0 0 0 0 0 1 1 0 2 1 0 2 0 1 0 0 1 0 0 0 9 0 1110.5862 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 583 591 WDR3 WD repeat-containing protein 3 yes no 2;3 0.0090732 93.195 5 0.83043 1.0548 26.21 5 Median 0.83043 1.0548 26.21 5 0 Median NaN NaN NaN 0 0 Median 27150000 14092000 13058000 27150000 14092000 13058000 0 0 0 3585 1576 3675 12880;12881;12882;12883;12884 19456;19457;19458;19459;19460;19461;19462 19458 7 FFNYVPSGIR ______________________________ VHRVRFFNYVPSGIRCVAYNNQSNRLAVSR R F F I R C 0 1 1 0 0 0 0 1 0 1 0 0 0 2 1 1 0 0 1 1 0 0 10 0 1198.6135 Q969X6;H3BPD7 Q969X6 11 20 CIRH1A Cirhin yes no 2 0.0029056 78.334 4 2 0.76517 1.0239 10.862 6 Median 0.79351 1.0606 7.9229 4 0 Median 0.64232 0.90964 1.46 2 0 Median 105490000 59945000 45544000 82418000 47094000 35324000 23072000 12852000 10220000 3586 1680 3676 12885;12886;12887;12888;12889;12890 19463;19464;19465;19466;19467;19468;19469;19470;19471 19466 9 FFPGHESR TVEIYNLSANYFQEKFFPGHESRATEALCW ANYFQEKFFPGHESRATEALCWAEGQRLFS K F F S R A 0 1 0 0 0 0 1 1 1 0 0 0 0 2 1 1 0 0 0 0 0 0 8 0 975.45626 Q969X6;H3BSH7;H3BPD7;I3L4T9 Q969X6 54 61 CIRH1A Cirhin yes no 3 0.018666 51.193 2 0.86455 1.1736 0.27598 2 Median 0.86455 1.1736 0.27598 2 0 Median NaN NaN NaN 0 0 Median 22682000 11858000 10824000 22682000 11858000 10824000 0 0 0 3587 1680 3677 12891;12892 19472;19473 19473 2 FFPLIEVNK SGEIRATAFNEQVDKFFPLIEVNKVYYFSK NEQVDKFFPLIEVNKVYYFSKGTLKIANKQ K F F N K V 0 0 1 0 0 0 1 0 0 1 1 1 0 2 1 0 0 0 0 1 0 0 9 0 1105.6172 P27694;I3L4R8 P27694 245 253 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 2 0.017961 53.968 1 0.8316 1.0563 NaN 1 Median 0.8316 1.0563 NaN 1 0 Median NaN NaN NaN 0 0 Median 7059200 3802200 3257000 7059200 3802200 3257000 0 0 0 3588 1302 3678 12893 19474 19474 1 FFQEENTEK DYIRTQIISKKINTKFFQEENTEKLKLKYY KKINTKFFQEENTEKLKLKYYNLMIQLDQH K F F E K L 0 0 1 0 0 1 3 0 0 0 0 1 0 2 0 0 1 0 0 0 0 0 9 0 1170.5193 A0A0S2Z489;O00232;A0A0S2Z476 A0A0S2Z489 213 221 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 2 0.0060833 69.825 1 0.57111 0.72209 NaN 1 Median 0.57111 0.72209 NaN 1 0 Median NaN NaN NaN 0 0 Median 11842000 6653000 5188600 11842000 6653000 5188600 0 0 0 3589 461 3679 12894 19475 19475 1 FFQGSQEFLASASASAER RRNMAYRARSKSRDRFFQGSQEFLASASAS GSQEFLASASASAERSCTPSPDQISHRASL R F F E R S 4 1 0 0 0 2 2 1 0 0 1 0 0 3 0 4 0 0 0 0 0 0 18 0 1931.9014 Q7Z2W4;A8K9U6;C9J6P4 Q7Z2W4 253 270 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 0.0013402 76.759 2 2 1.5822 2.3074 42.638 3 Median 0.90516 1.2831 NaN 1 0 Median 1.8252 2.6047 17.136 2 0 Median 20115000 9164600 10951000 5553400 2973800 2579600 14562000 6190800 8371200 3590 1613 3680 12895;12896;12897;12898 19476;19477;19478;19479;19480 19478 5 FFSGYGR IGRLSYNVREKDIQRFFSGYGRLLEVDLKN VREKDIQRFFSGYGRLLEVDLKNGYGFVEF R F F G R L 0 1 0 0 0 0 0 2 0 0 0 0 0 2 0 1 0 0 1 0 0 0 7 0 832.38679 Q59GY3;V9HVZ0;A8K588;Q13247;B5BU15 Q59GY3 55 61 HEL-S-91;SRSF6;SFRS6 Serine/arginine-rich splicing factor 6 yes no 2 0.010213 117.56 1 0.34755 0.47928 NaN 1 Median 0.34755 0.47928 NaN 1 0 Median NaN NaN NaN 0 0 Median 46466000 32632000 13834000 46466000 32632000 13834000 0 0 0 3591 615 3681 12899 19481 19481 1 FFSRPSGR SNPAICRHRQAARSRFFSRPSGRSDLTVDA RQAARSRFFSRPSGRSDLTVDAVKLHNELQ R F F G R S 0 2 0 0 0 0 0 1 0 0 0 0 0 2 1 2 0 0 0 0 0 0 8 1 952.4879 B3KMR5;Q5JTH9;A0A087X1U8;H7C1M8 B3KMR5 41 48 RRP12 RRP12-like protein yes no 3 0.012116 48.283 1 1.0163 1.3555 NaN 1 Median 1.0163 1.3555 NaN 1 0 Median NaN NaN NaN 0 0 Median 13775000 7192900 6582200 13775000 7192900 6582200 0 0 0 3592 756 3682 12900 19482 19482 1 FFTTPSK GKKDARQTPKKPEAKFFTTPSKSVRKASHT TPKKPEAKFFTTPSKSVRKASHTPKKWPKK K F F S K S 0 0 0 0 0 0 0 0 0 0 0 1 0 2 1 1 2 0 0 0 0 0 7 0 826.4225 O76021 O76021 462 468 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 1;2 0.0053073 143.02 5 2 0.69224 0.89703 23.04 7 Median 0.69691 0.90763 3.5242 5 0 Median 0.36078 0.57016 2.1744 2 0 Median 1080500000 669020000 411450000 786190000 458830000 327360000 294270000 210180000 84086000 3593 1210 3683 12901;12902;12903;12904;12905;12906;12907 19483;19484;19485;19486;19487;19488;19489;19490;19491;19492;19493 19484 11 FFVADTANEALEAAK QSKKLMSDNGVRVQRFFVADTANEALEAAK FFVADTANEALEAAKRLNAKEIVLKAQILA R F F A K R 5 0 1 1 0 0 2 0 0 0 1 1 0 2 0 0 1 0 0 1 0 0 15 0 1595.7831 A0A024R325;Q96I99;E9PDQ8 A0A024R325 59 73 SUCLG2 Succinyl-CoA ligase subunit beta;Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes no 2 0.046073 33.057 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2321100 0 2321100 0 0 0 2321100 0 2321100 3594 96 3684 12908 19494 19494 1 FFVAPFPEVFGK HQGLPQEVLNENLLRFFVAPFPEVFGKEKV LLRFFVAPFPEVFGKEKVNELSKDIGSEST R F F G K E 1 0 0 0 0 0 1 1 0 0 0 1 0 4 2 0 0 0 0 2 0 0 12 0 1383.7227 CON__P02662 CON__P02662 23 34 yes yes 2 0.0010918 121.73 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5232300 5232300 0 5232300 5232300 0 0 0 0 + 3595 950 3685 12909;12910;12911 19495;19496;19497 19497 3 FFVVFR IETVISDEEVIKWTKFFVVFRHPVLIFITE DEEVIKWTKFFVVFRHPVLIFITEKHGNYF K F F F R H 0 1 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 2 0 0 6 0 813.45375 Q9H8H0;J3QR28;J3QLQ6 Q9H8H0 158 163 NOL11 Nucleolar protein 11 yes no 2 0.036304 81.297 1 0.8989 1.2171 NaN 1 Median 0.8989 1.2171 NaN 1 0 Median NaN NaN NaN 0 0 Median 8780200 4848700 3931500 8780200 4848700 3931500 0 0 0 3596 1743 3686 12912 19498 19498 1 FGAEDLFK NSNPFNKEELTAILKFGAEDLFKELEGEES ELTAILKFGAEDLFKELEGEESEPQEMDID K F G F K E 1 0 0 1 0 0 1 1 0 0 1 1 0 2 0 0 0 0 0 0 0 0 8 0 925.45453 A0A024RC75;O14647;A0A1B0GTU9;A8K9Y5 A0A024RC75 974 981 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 2 0.014228 66.073 1 2 0.78059 1.118 4.7298 2 Median NaN NaN NaN 0 0 Median 0.78059 1.118 4.7298 2 0 Median 10738000 5550900 5187200 0 0 0 10738000 5550900 5187200 3597 289 3687 12913;12914;12915 19499;19500;19501;19502;19503 19501 5 FGAQQDTIEVPEK LKQLVAEQVTYQRNRFGAQQDTIEVPEKDL NRFGAQQDTIEVPEKDLVDKARQINIHNLS R F G E K D 1 0 0 1 0 2 2 1 0 1 0 1 0 1 1 0 1 0 0 1 0 0 13 0 1460.7147 B4DSV5;B3KXZ4;H0Y8E6;P49736;B7Z8Z6;Q9BWF4 B4DSV5 721 733 MCM2 DNA helicase;DNA replication licensing factor MCM2 yes no 2 2.3605E-06 138.42 3 0.35183 0.46186 14.051 2 Median 0.35183 0.46186 14.051 2 0 Median NaN NaN NaN 0 0 Median 7769600 5464500 2305200 7769600 5464500 2305200 0 0 0 3598 790 3688 12916;12917;12918 19504;19505;19506 19504 3 FGDPECQVILPLLK MLTKNGPKVLEFNCRFGDPECQVILPLLKS RFGDPECQVILPLLKSDLYEVIQSTLDGLL R F G L K S 0 0 0 1 1 1 1 1 0 1 3 1 0 1 2 0 0 0 0 1 0 0 14 0 1627.8644 Q3B7A7;Q59HH3;P22102;Q15374 Q3B7A7 293 306 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 9.6434E-21 174.23 3 0.20797 0.27 12.974 3 Median 0.20797 0.27 12.974 3 0 Median NaN NaN NaN 0 0 Median 39355000 31069000 8286000 39355000 31069000 8286000 0 0 0 3599 1289 3689 12919;12920;12921 19507;19508;19509 19507 3 FGEVSDVEIITR SQDISEADLQNQFSRFGEVSDVEIITRKDD FSRFGEVSDVEIITRKDDQGNPQKVFAYIN R F G T R K 0 1 0 1 0 0 2 1 0 2 0 0 0 1 0 1 1 0 0 2 0 0 12 0 1363.6983 F5H101;A0A024R250;Q76FK4;F8WE42;B4DM91;F5GWN9;A0A0A0MSJ1;F5H8B8;F5H532;F5H0I5;F5GXV1 F5H101 31 42 NOL8 Nucleolar protein 8 yes no 2 1.5574E-05 81.865 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3600 80 3690 12922 19510 19510 1 FGEVVLQPPELTARPQR AADRLEQELLRDTVKFGEVVLQPPELTARP EVVLQPPELTARPQRSVSKDQPGRRSQMLR K F G Q R S 1 2 0 0 0 2 2 1 0 0 2 0 0 1 3 0 1 0 0 2 0 0 17 1 1936.053 I3L0U5;H6QX63;Q6PK04 I3L0U5 207 223 CCDC137 Coiled-coil domain-containing protein 137 yes no 3 1.357E-05 85.837 4 2 1.1026 1.495 13.304 6 Median 1.1548 1.5597 10.377 4 0 Median 0.88705 1.314 4.7793 2 0 Median 67700000 30867000 36833000 40534000 16216000 24319000 27165000 14651000 12514000 3601 1112 3691 12923;12924;12925;12926;12927;12928 19511;19512;19513;19514;19515;19516;19517;19518;19519 19514 9 FGFELVK FRMKLRNLFTKFIRKFGFELVKRLLPEEYH LFTKFIRKFGFELVKRLLPEEYHRVLVNIR K F G V K R 0 0 0 0 0 0 1 1 0 0 1 1 0 2 0 0 0 0 0 1 0 0 7 0 838.45889 B3KMR5;Q5JTH9;B3KY97;B3KPQ2 B3KMR5 1015 1021 RRP12 RRP12-like protein yes no 2 0.032699 92.467 3 0.8765 1.1493 9.7446 3 Median 0.8765 1.1493 9.7446 3 0 Median NaN NaN NaN 0 0 Median 14952000 7286400 7665300 14952000 7286400 7665300 0 0 0 3602 756 3692 12929;12930;12931 19520;19521;19522;19523;19524 19523 5 FGFELVKR FRMKLRNLFTKFIRKFGFELVKRLLPEEYH FTKFIRKFGFELVKRLLPEEYHRVLVNIRK K F G K R L 0 1 0 0 0 0 1 1 0 0 1 1 0 2 0 0 0 0 0 1 0 0 8 1 994.56 B3KMR5;Q5JTH9;B3KY97;B3KPQ2 B3KMR5 1015 1022 RRP12 RRP12-like protein yes no 3 0.026581 58.815 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1090500 1090500 0 1090500 1090500 0 0 0 0 3603 756 3693 12932;12933 19525;19526 19525 2 FGFGFGGTGK GWSTMQASLDLGTDKFGFGFGGTGKKSHNK LGTDKFGFGFGGTGKKSHNKQFDNYGEEFT K F G G K K 0 0 0 0 0 0 0 5 0 0 0 1 0 3 0 0 1 0 0 0 0 0 10 0 973.46577 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 82 91 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.0086505 85.731 3 2 0.64296 0.85124 13.431 4 Median 0.75287 0.95321 3.0775 2 0 Median 0.55813 0.75875 3.344 2 0 Median 40529000 26082000 14448000 32425000 21062000 11363000 8104500 5019300 3085100 3604 378 3694 12934;12935;12936;12937;12938 19527;19528;19529;19530;19531;19532 19529 6 FGFIGFK TDCSLKFTKDGKFRKFGFIGFKSEEEAQKA TKDGKFRKFGFIGFKSEEEAQKAQKHFNKS K F G F K S 0 0 0 0 0 0 0 2 0 1 0 1 0 3 0 0 0 0 0 0 0 0 7 0 814.43776 A0A024RBL4;Q9Y4C8 Q9Y4C8 44 50 RBM19 Probable RNA-binding protein 19 no no 2 0.020854 65.263 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3605 278;1825 3695 12939 19533 19533 1 FGFPEGSVELYAEK KGRRIRELTAVVQKRFGFPEGSVELYAEKV RFGFPEGSVELYAEKVATRGLCAIAQAESL R F G E K V 1 0 0 0 0 0 3 2 0 0 1 1 0 2 1 1 0 0 1 1 0 0 14 0 1571.7508 P23396;E9PPU1;F2Z2S8;H0YCJ7;H0YF32;A7E2S3 P23396 77 90 RPS3 40S ribosomal protein S3 yes no 2 1.3931E-06 128.88 4 1 0.76238 1.0026 54.206 4 Median 0.76074 1.001 1.8208 3 0 Median 1.8577 2.9326 NaN 1 0 Median 479080000 226020000 253060000 431520000 210360000 221160000 47554000 15655000 31899000 3606 1293 3696 12940;12941;12942;12943;12944 19534;19535;19536;19537;19538;19539;19540;19541;19542;19543;19544 19538 11 FGFYEVFK WAPTFLGYSMQGLCKFGFYEVFKVLYSNML SMQGLCKFGFYEVFKVLYSNMLGEENTYLW K F G F K V 0 0 0 0 0 0 1 1 0 0 0 1 0 3 0 0 0 0 1 1 0 0 8 0 1035.5066 F8VVM2;Q8NCF7;Q53HC3;B2RE88;A0A024RBE8;F8VWQ0;A0A024RBH9;Q00325;F8VZL5;F8VWR4 F8VVM2 137 144 SLC25A3 Phosphate carrier protein, mitochondrial yes no 2 0.02509 69.198 2 0.49252 0.62567 11.136 2 Median 0.49252 0.62567 11.136 2 0 Median NaN NaN NaN 0 0 Median 8878400 5877000 3001500 8878400 5877000 3001500 0 0 0 3607 271 3697 12945;12946 19545;19546 19546 2 FGGEHVPNSPFQVTALAGDQPSVQPPLR FYTAPQPGKYVICVRFGGEHVPNSPFQVTA TALAGDQPSVQPPLRSQQLAPQYTYAQGGQ R F G L R S 2 1 1 1 0 3 1 3 1 0 2 0 0 2 5 2 1 0 0 3 0 0 28 0 2944.4832 P21333;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;H0Y5F3 P21333 1726 1753 FLNA;FLJ00119 Filamin-A yes no 3 4.5956E-21 118.15 4 0.84893 1.1382 5.9159 4 Median 0.84893 1.1382 5.9159 4 0 Median NaN NaN NaN 0 0 Median 95247000 51188000 44058000 95247000 51188000 44058000 0 0 0 3608 1287 3698 12947;12948;12949;12950 19547;19548;19549;19550;19551;19552;19553;19554 19548 8 FGGNPGGFGNQGGFGNSR EPKHNSNRQLERSGRFGGNPGGFGNQGGFG NPGGFGNQGGFGNSRGGGAGLG________ R F G S R G 0 1 3 0 0 1 0 8 0 0 0 0 0 3 1 1 0 0 0 0 0 0 18 0 1725.7608 A0A087WX29;B4DRW3;A0A0A0N0L3;A0A024R4E2;Q13148 A0A087WX29 219 236 TARDBP;TDP43 TAR DNA-binding protein 43 yes no 2 2.9097E-31 175.88 5 2 0.39161 0.53245 114.56 6 Median 0.36684 0.49235 7.9622 4 0 Median 3.1205 4.6518 10.178 2 0 Median 76322000 39398000 36924000 45885000 31423000 14462000 30437000 7975100 22462000 3609 121 3699 12951;12952;12953;12954;12955;12956;12957 19555;19556;19557;19558;19559;19560;19561;19562;19563;19564;19565;19566 19558 12 FGGPVHHQAQR NVALLSQLYHSPARRFGGPVHHQAQRFRFS PARRFGGPVHHQAQRFRFSPMGVDHMSGLS R F G Q R F 1 1 0 0 0 2 0 2 2 0 0 0 0 1 1 0 0 0 0 1 0 0 11 0 1232.6163 Q15717 Q15717 207 217 ELAVL1 ELAV-like protein 1 yes yes 2;3 0.00097172 96.665 2 0.3462 0.48738 NaN 1 Median 0.3462 0.48738 NaN 1 0 Median NaN NaN NaN 0 0 Median 2061100 1769300 291810 2061100 1769300 291810 0 0 0 3610 1515 3700 12958;12959 19567;19568;19569 19568 3 FGITGYGK TQEFNLEKARLEVHRFGITGYGKGKERILE ARLEVHRFGITGYGKGKERILEQERAIMLG R F G G K G 0 0 0 0 0 0 0 3 0 1 0 1 0 1 0 0 1 0 1 0 0 0 8 0 841.4334 Q5TBH9;Q8NDD1;Q5TBI2;B4E0F7 Q5TBH9 178 185 C1orf131 Uncharacterized protein C1orf131 yes no 2 0.028424 52.403 2 0.97159 1.1959 1.5904 2 Median 0.97159 1.1959 1.5904 2 0 Median NaN NaN NaN 0 0 Median 63227000 34434000 28792000 63227000 34434000 28792000 0 0 0 3611 1574 3701 12960;12961 19570;19571;19572;19573 19572 4 FGLALAVAGGVVNSALYNVDAGHR ______________________________ GVVNSALYNVDAGHRAVIFDRFRGVQDIVV K F G H R A 5 1 2 1 0 0 0 4 1 0 3 0 0 1 0 1 0 0 1 4 0 0 24 0 2370.2444 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0;C9JW96;C9JZ20;E7ESE2;E9PCW0;D6RBK0 Q6PUJ7 12 35 HEL-S-54e;PHB Prohibitin yes no 2;3 2.63E-48 170.32 7 0.57886 0.80598 12.304 5 Median 0.57886 0.80598 12.304 5 0 Median NaN NaN NaN 0 0 Median 410770000 265400000 145370000 410770000 265400000 145370000 0 0 0 3612 600 3702 12962;12963;12964;12965;12966;12967;12968 19574;19575;19576;19577;19578;19579;19580;19581;19582;19583;19584;19585;19586 19574 13 FGLGAEVGISTSR CVFWNASTRFSDGYRFGLGAEVGISTSRIH YRFGLGAEVGISTSRIHARGPVGLEGLLTT R F G S R I 1 1 0 0 0 0 1 3 0 1 1 0 0 1 0 2 1 0 0 1 0 0 13 0 1292.6725 P54886 P54886 733 745 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.0046515 45.433 1 1.292 1.6944 NaN 1 Median 1.292 1.6944 NaN 1 0 Median NaN NaN NaN 0 0 Median 7093100 2791700 4301400 7093100 2791700 4301400 0 0 0 3613 1375 3703 12969 19587 19587 1 FGLISSTAYAQEIQK ENATLKAELLSLKLKFGLISSTAYAQEIQK FGLISSTAYAQEIQKLSNSTAVYFQDYQTS K F G Q K L 2 0 0 0 0 2 1 1 0 2 1 1 0 1 0 2 1 0 1 0 0 0 15 0 1654.8566 D9IVD5;A0A024R241;Q16649 D9IVD5 126 140 NFIL3 Nuclear factor interleukin-3-regulated protein yes no 2 0.006912 93.839 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 718260 718260 0 718260 718260 0 0 0 0 3614 79 3704 12970 19588 19588 1 FGLLDQDLSNIGPAYDNQK HPDPGSKDPEEDYPKFGLLDQDLSNIGPAY DQDLSNIGPAYDNQKQSSAVSTSGNLNGGI K F G Q K Q 1 0 2 3 0 2 0 2 0 1 3 1 0 1 1 1 0 0 1 0 0 0 19 0 2107.0222 A8K6T5;Q9UBL3;F5H8F7;B4DPT1 A8K6T5 254 272 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 2 1.8891E-15 135.86 4 0.71967 0.91565 14.66 4 Median 0.71967 0.91565 14.66 4 0 Median NaN NaN NaN 0 0 Median 35919000 21371000 14548000 35919000 21371000 14548000 0 0 0 3615 627 3705 12971;12972;12973;12974 19589;19590;19591;19592;19593;19594;19595 19590 7 FGLSVGHHLGK FLMKKEVQDEEKNKKFGLSVGHHLGKSIPT KNKKFGLSVGHHLGKSIPTDNQIKARK___ K F G G K S 0 0 0 0 0 0 0 3 2 0 2 1 0 1 0 1 0 0 0 1 0 0 11 0 1150.6247 B4DLR8;Q3B792;P15559;H3BNV2;Q53G81;B4DQP5 B4DLR8 180 190 NQO1 NAD(P)H dehydrogenase [quinone] 1 yes no 3 0.029435 66.92 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4167500 4167500 0 4167500 4167500 0 0 0 0 3616 829 3706 12975 19596 19596 1 FGNAFHLCR KPVKTLTTKERKKSRFGNAFHLCREVLRLT ERKKSRFGNAFHLCREVLRLTKLVVDSHVQ R F G C R E 1 1 1 0 1 0 0 1 1 0 1 0 0 2 0 0 0 0 0 0 0 0 9 0 1120.5236 Q6P2Q9;I3L0J9 Q6P2Q9 540 548 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 0.029468 28.727 1 0.57954 0.78817 NaN 1 Median 0.57954 0.78817 NaN 1 0 Median NaN NaN NaN 0 0 Median 13028000 6805000 6222900 13028000 6805000 6222900 0 0 0 3617 1592 3707 12976 19597 19597 1 FGNPLHIAQK QNELILALFSGENFRFGNPLHIAQKLFRDG GENFRFGNPLHIAQKLFRDGHFNPEVVKYR R F G Q K L 1 0 1 0 0 1 0 1 1 1 1 1 0 1 1 0 0 0 0 0 0 0 10 0 1123.6138 A0A024R3K9;A0A024R3N2;Q6P4R8;E9PQ59;B4DSL1;E9PJU3;E9PJG2;E9PQB0 A0A024R3K9 100 109 NFRKB Nuclear factor related to kappa-B-binding protein yes no 3 0.031391 27.864 1 0.88865 1.1098 NaN 1 Median 0.88865 1.1098 NaN 1 0 Median NaN NaN NaN 0 0 Median 7795100 4041300 3753800 7795100 4041300 3753800 0 0 0 3618 101 3708 12977 19598 19598 1 FGNVYLAR TIDDFEIGRPLGKGKFGNVYLAREKKSHFI RPLGKGKFGNVYLAREKKSHFIVALKVLFK K F G A R E 1 1 1 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 1 1 0 0 8 0 938.4974 B2RC06;J3KT86;B4DXA6;A0A0A0MSY3;V9HW16;Q5Y191;Q9UQB9;Q96GD4;J3KTD6;J3QLN8;J3QR41;J3KRJ2;O14965;Q5QPD4;B4DX16;A3KFJ0;B2R6Z3;A3KFJ1 B2RC06 88 95 AURKB;AURKC;HEL-S-90;AURKA Aurora kinase C;Aurora kinase B;Aurora kinase A no no 2 1.4104E-05 143.37 4 2 0.85913 1.2142 2.6269 6 Median 0.87645 1.2126 3.1657 4 0 Median 0.76058 1.221 1.67 2 0 Median 348270000 187340000 160930000 259390000 136970000 122430000 88878000 50373000 38505000 3619 731;1686;1172 3709 12978;12979;12980;12981;12982;12983 19599;19600;19601;19602;19603;19604;19605;19606;19607;19608;19609;19610;19611 19604 13 FGPALSVK GEDMDDERLKDLFGKFGPALSVKVMTDESG LKDLFGKFGPALSVKVMTDESGKSKGFGFV K F G V K V 1 0 0 0 0 0 0 1 0 0 1 1 0 1 1 1 0 0 0 1 0 0 8 0 817.46979 A0A087WTT1;A0A024R9C1;P11940;A0A024R9E2;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;H0YBN4;Q2VIP3;Q5VX58;Q3ZCS4;Q9H361;H0YAP2 A0A087WTT1 189 196 PABPC1;PABPC3 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 2 0.015515 63.565 2 0.24312 0.31032 NaN 1 Median 0.24312 0.31032 NaN 1 0 Median NaN NaN NaN 0 0 Median 28853000 25052000 3800900 28853000 25052000 3800900 0 0 0 3620 217 3710 12984;12985 19612;19613 19612 2 FGQGGAGPVGGQGPR TMSGSMMGSDMRTERFGQGGAGPVGGQGPR FGQGGAGPVGGQGPRGMGPGTPAGYGRGRE R F G P R G 1 1 0 0 0 2 0 7 0 0 0 0 0 1 2 0 0 0 0 1 0 0 15 0 1340.6585 Q9BSV4;Q86VG2;P23246 Q9BSV4 594 608 SFPQ Splicing factor, proline- and glutamine-rich yes no 2 0.0013664 88.056 1 2 1.1685 1.6371 133.45 2 Median 0.46395 0.63718 NaN 1 0 Median 2.9429 4.2061 NaN 1 0 Median 21906000 5911800 15994000 4888200 3114300 1773900 17017000 2797500 14220000 3621 1292 3711 12986;12987;12988 19614;19615;19616 19614 3 FGQVGLCDLTQQPK LHPSETRTLVAVGAKFGQVGLCDLTQQPKE KFGQVGLCDLTQQPKEDGVYVFHPHSQPVS K F G P K E 0 0 0 1 1 3 0 2 0 0 2 1 0 1 1 0 1 0 0 1 0 0 14 0 1589.7872 A0A0C4DFX7;Q9H967 A0A0C4DFX7 272 285 WDR76 WD repeat-containing protein 76 yes no 2 2.147E-06 83.397 2 0.80336 1.0135 25.96 2 Median 0.80336 1.0135 25.96 2 0 Median NaN NaN NaN 0 0 Median 13022000 7687300 5334400 13022000 7687300 5334400 0 0 0 3622 421 3712 12989;12990 19617;19618;19619;19620 19619 4 FGSEFSPELQASFQK FRLLGNVLVVVLARRFGSEFSPELQASFQK FGSEFSPELQASFQKVVTGVANALAHRYH_ R F G Q K V 1 0 0 0 0 2 2 1 0 0 1 1 0 3 1 3 0 0 0 0 0 0 15 0 1700.8046 CON__Q3SX09 CON__Q3SX09 173 187 yes yes 2 4.351E-77 234.24 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66507000 66507000 0 66507000 66507000 0 0 0 0 + 3623 969 3713 12991;12992;12993 19621;19622;19623 19621 3 FGTEELFK KTGSMSKQELDDILKFGTEELFKDEATDGG ELDDILKFGTEELFKDEATDGGGDNKEGED K F G F K D 0 0 0 0 0 0 2 1 0 0 1 1 0 2 0 0 1 0 0 0 0 0 8 0 969.48075 B3KY63;F5GWX5;A0A0C4DGG9;Q14839;Q8TDI0;K7EMY3;Q659F1;Q659D0;B3KRD4;Q12873;B4DLC6 B3KY63 1195 1202 CHD4;CHD5;DKFZp434K213;DKFZp434P202;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 no no 2 0.005793 87.754 1 2 1.1621 1.7505 35.361 3 Plateau 0.74677 0.94253 NaN 1 0 Median 1.1523 1.7388 0.95206 2 0 Median 45623000 22814000 22809000 11219000 6642900 4576500 34404000 16171000 18233000 3624 428;1458 3714 12994;12995;12996 19624;19625;19626;19627;19628;19629 19625 6 FGTEELFKDEATDGGGDNK KTGSMSKQELDDILKFGTEELFKDEATDGG ELFKDEATDGGGDNKEGEDSSVIHYDDKAI K F G N K E 1 0 1 3 0 0 3 4 0 0 1 2 0 2 0 0 2 0 0 0 0 0 19 1 2028.8912 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 1195 1213 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 2.2566E-19 147.17 4 2 0.80554 0.99325 35.872 6 Median 0.774 0.9547 6.6027 4 0 Median 1.1725 1.8728 2.0886 2 0 Median 97605000 52173000 45432000 61853000 34746000 27108000 35751000 17427000 18324000 3625 428 3715 12997;12998;12999;13000;13001;13002 19630;19631;19632;19633;19634;19635;19636;19637;19638;19639;19640;19641;19642;19643 19632 14 FGTEELFKDEATDGGGDNKEGEDSSVIHYDDK KTGSMSKQELDDILKFGTEELFKDEATDGG NKEGEDSSVIHYDDKAIERLLDRNQDETED K F G D K A 1 0 1 6 0 0 5 5 1 1 1 3 0 2 0 2 2 0 1 1 0 0 32 2 3503.5125 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 1195 1226 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 4 4.1891E-06 60.23 4 0.70829 0.82674 32.162 4 Median 0.70829 0.82674 32.162 4 0 Median NaN NaN NaN 0 0 Median 29063000 15104000 13960000 29063000 15104000 13960000 0 0 0 3626 428 3716 13003;13004;13005;13006 19644;19645;19646;19647;19648;19649;19650 19647 7 FGVEQPEGDEDLTK KGKNICEGGEEMDNKFGVEQPEGDEDLTKE KFGVEQPEGDEDLTKEKGHGGCGRYQPRIR K F G T K E 0 0 0 2 0 1 3 2 0 0 1 1 0 1 1 0 1 0 0 1 0 0 14 0 1562.71 P24928;A0A087WWE2 P24928 164 177 POLR2A DNA-directed RNA polymerase II subunit RPB1;DNA-directed RNA polymerase yes no 2 9.8873E-07 132.03 2 1.0517 1.3835 NaN 1 Median 1.0517 1.3835 NaN 1 0 Median NaN NaN NaN 0 0 Median 3157700 987670 2170100 3157700 987670 2170100 0 0 0 3627 1295 3717 13007;13008 19651;19652 19651 2 FGVFNYSPFR AMQEMEVYVENIRRKFGVFNYSPFRTPYTP NIRRKFGVFNYSPFRTPYTPNSQYQMLLDP K F G F R T 0 1 1 0 0 0 0 1 0 0 0 0 0 3 1 1 0 0 1 1 0 0 10 0 1232.5978 A0A087WYS3;H7C4X9;A0A087WVZ6;Q9ULU4;A0A087WV57;A6H8Y8;Q5JV90 A0A087WYS3 357 366 ZMYND8;DKFZp564P1772 Protein kinase C-binding protein 1 yes no 2 0.00055914 109.71 3 1 0.57309 0.81917 24.963 3 Median 0.54828 0.76024 10.558 2 0 Median 0.83196 1.1485 NaN 1 0 Median 15127000 8719100 6408300 9315600 5994800 3320800 5811800 2724300 3087500 3628 365 3718 13009;13010;13011;13012 19653;19654;19655;19656;19657;19658;19659 19656 7 FGVPVIADGGIQNVGHIAK PQATAVYKVSEYARRFGVPVIADGGIQNVG VIADGGIQNVGHIAKALALGASTVMMGSLL R F G A K A 2 0 1 1 0 1 0 4 1 3 0 1 0 1 1 0 0 0 0 3 0 0 19 0 1891.0316 P12268;H0Y4R1 P12268 357 375 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 3 0.00014047 83.252 3 1 0.36437 0.45587 145.49 4 Median 0.34765 0.43413 6.8413 3 0 Median 5.3909 8.1212 NaN 1 0 Median 104140000 67615000 36529000 83140000 63364000 19776000 21004000 4251000 16753000 3629 1261 3719 13013;13014;13015;13016 19660;19661;19662;19663;19664;19665 19663 6 FGVSSSSSGPSQTLTSTGNFK TSSSSSNSAASSSFKFGVSSSSSGPSQTLT SSGPSQTLTSTGNFKFGDQGGFKIGVSSDS K F G F K F 0 0 1 0 0 1 0 3 0 0 1 1 0 2 1 7 3 0 0 1 0 0 21 0 2074.9807 A0A024QZW7;P49790 A0A024QZW7 905 925 NUP153 Nuclear pore complex protein Nup153 yes no 2 0.033464 23.881 1 0.86012 1.0477 NaN 1 Median 0.86012 1.0477 NaN 1 0 Median NaN NaN NaN 0 0 Median 3299300 1761000 1538300 3299300 1761000 1538300 0 0 0 3630 22 3720 13017 19666 19666 1 FGVVANNNR VAYISLYSYFSSRGRFGVVANNNRHVKDLY FSSRGRFGVVANNNRHVKDLYLIPLSAQDP R F G N R H 1 1 3 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 9 0 989.50428 Q9BTC0 Q9BTC0 1146 1154 DIDO1 Death-inducer obliterator 1 yes yes 2 0.0040108 65.803 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3631 1713 3721 13018 19667 19667 1 FGVVLDEIKPSSAPELQAVR ERDVFLYRAYLAQRKFGVVLDEIKPSSAPE DEIKPSSAPELQAVRMFADYLAHESRRDSI K F G V R M 2 1 0 1 0 1 2 1 0 1 2 1 0 1 2 2 0 0 0 3 0 0 20 1 2154.1685 M0QXB4;O14579;Q53HJ6;M0R061;Q7Z4Z1 M0QXB4 66 85 COPE Coatomer subunit epsilon yes no 3 3.0276E-16 133.86 3 0.59591 0.75733 12.481 3 Median 0.59591 0.75733 12.481 3 0 Median NaN NaN NaN 0 0 Median 27186000 17947000 9239400 27186000 17947000 9239400 0 0 0 3632 1158 3722 13019;13020;13021 19668;19669;19670 19668 3 FGYQFTQQGPR LEMAKMLEENTNILKFGYQFTQQGPRTRAA NILKFGYQFTQQGPRTRAANAITKNNDLVR K F G P R T 0 1 0 0 0 3 0 2 0 0 0 0 0 2 1 0 1 0 1 0 0 0 11 0 1327.6309 Q5HYL6;Q9NYL9;H0YKU1;H0YNJ8 Q5HYL6 318 328 DKFZp686E1899;TMOD3 Tropomodulin-3 yes no 2 3.1639E-05 137.14 4 0.99913 1.3517 8.6285 4 Median 0.99913 1.3517 8.6285 4 0 Median NaN NaN NaN 0 0 Median 42531000 21169000 21362000 42531000 21169000 21362000 0 0 0 3633 1558 3723 13022;13023;13024;13025 19671;19672;19673;19674 19672 4 FGYSVNRK ______________________________ GKTRRQKFGYSVNRKRLNRNARRKAAPRIE K F G R K R 0 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 0 1 1 0 0 8 1 969.50321 Q9Y3C1;D6RIC3;A0A0C4DGU5;A0A087X2G6;D6RC60;B4E098;A0A087WU10 Q9Y3C1 13 20 NOP16 Nucleolar protein 16 yes no 2;3 0.02264 87.754 3 0.74543 0.97545 4.3062 3 Median 0.74543 0.97545 4.3062 3 0 Median NaN NaN NaN 0 0 Median 41612000 23589000 18023000 41612000 23589000 18023000 0 0 0 3634 1817 3724 13026;13027;13028 19675;19676;19677 19677 3 FGYVDFESAEDLEK NDLAVVDVRIGMTRKFGYVDFESAEDLEKA KFGYVDFESAEDLEKALELTGLKVFGNEIK K F G E K A 1 0 0 2 0 0 3 1 0 0 1 1 0 2 0 1 0 0 1 1 0 0 14 0 1647.7304 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99 B3KTP9 272 285 NCL Nucleolin yes no 2 3.2676E-21 177.57 4 2 0.95093 1.2018 7.8893 6 Median 0.97924 1.232 5.0364 4 0 Median 0.7003 1.1133 7.699 2 0 Median 280730000 151280000 129450000 203970000 105750000 98221000 76756000 45532000 31225000 3635 119 3725 13029;13030;13031;13032;13033;13034 19678;19679;19680;19681;19682;19683;19684;19685;19686;19687;19688 19681 11 FHCPHCDTVIAR MKMHILQKHTENVAKFHCPHCDTVIARKSD VAKFHCPHCDTVIARKSDLGVHLRKQHSYI K F H A R K 1 1 0 1 2 0 0 0 2 1 0 0 0 1 1 0 1 0 0 1 0 0 12 0 1511.6762 P49711 P49711 437 448 CTCF Transcriptional repressor CTCF yes yes 3 0.0081728 64.945 1 0.84706 1.1882 NaN 1 Median 0.84706 1.1882 NaN 1 0 Median NaN NaN NaN 0 0 Median 3534800 2116000 1418800 3534800 2116000 1418800 0 0 0 3636 1354 3726 13035 19689;19690 19690 2 FHDPDSAVVAQHLTNTVFVDR DDSPLPVSSRVCFVKFHDPDSAVVAQHLTN AVVAQHLTNTVFVDRALIVVPYAEGVIPDE K F H D R A 2 1 1 3 0 1 0 0 2 0 1 0 0 2 1 1 2 0 0 4 0 0 21 0 2367.1608 Q05BU6;Q6PJY9;Q6PKC9;Q5T760;Q6PJB9;Q05519;B4DWT1;B4DTC1 Q05BU6 83 103 SFRS11;SRSF11 Serine/arginine-rich splicing factor 11 yes no 3 0.0132 20.446 1 0.63412 0.88707 NaN 1 Median 0.63412 0.88707 NaN 1 0 Median NaN NaN NaN 0 0 Median 6104800 3525800 2579000 6104800 3525800 2579000 0 0 0 3637 1442 3727 13036 19691 19691 1 FHEAQLSEK ENGNPQQMQQELQRKFHEAQLSEKISLQAI QELQRKFHEAQLSEKISLQAIQQLVRKSYQ K F H E K I 1 0 0 0 0 1 2 0 1 0 1 1 0 1 0 1 0 0 0 0 0 0 9 0 1087.5298 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 729 737 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.0009569 114.4 1 0.3467 0.44007 NaN 1 Median 0.3467 0.44007 NaN 1 0 Median NaN NaN NaN 0 0 Median 3715200 2505200 1210000 3715200 2505200 1210000 0 0 0 3638 29 3728 13037 19692 19692 1 FHEQFIVR EASKQLESSRQLASRFHEQFIVREDLMGLA SRQLASRFHEQFIVREDLMGLAIGTHGANI R F H V R E 0 1 0 0 0 1 1 0 1 1 0 0 0 2 0 0 0 0 0 1 0 0 8 0 1074.5611 X5DQX7;Q06787;W5ZQ92;R9WQY1;A8MQB8;G3V0J0;X5D907;R9WNI0;Q59GC1;R9WPL0;A0A087WXI3;A0A0K0MJ24;Q8IXW7;A0A087WY29;A0A087WWR6 X5DQX7 219 226 FMR1 Fragile X mental retardation protein 1 yes no 2;3 0.0046217 98.629 4 2 0.8261 1.1201 13.987 6 Median 0.92904 1.2463 11.616 4 0 Median 0.69097 0.98101 0.20356 2 0 Median 99336000 52125000 47211000 81497000 41752000 39746000 17839000 10374000 7465400 3639 1447 3729 13038;13039;13040;13041;13042;13043 19693;19694;19695;19696;19697;19698;19699;19700;19701 19695 9 FHFIDIYLDELSK KEVLCPESQSPNGVRFHFIDIYLDELSKVG VRFHFIDIYLDELSKVGGKELLADQNLKFI R F H S K V 0 0 0 2 0 0 1 0 1 2 2 1 0 2 0 1 0 0 1 0 0 0 13 0 1638.8294 Q14684;Q6PJM8 Q14684 166 178 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 2;3 0.00044695 83.397 3 0.70835 0.91594 36.387 2 Median 0.70835 0.91594 36.387 2 0 Median NaN NaN NaN 0 0 Median 6762700 2646600 4116100 6762700 2646600 4116100 0 0 0 3640 1493 3730 13044;13045;13046 19702;19703;19704;19705;19706 19706 5 FHGVLK LADRFMNAVFFLLPKFHGVLKTLCLEVVLC NAVFFLLPKFHGVLKTLCLEVVLCRVEGMT K F H L K T 0 0 0 0 0 0 0 1 1 0 1 1 0 1 0 0 0 0 0 1 0 0 6 0 699.4068 P78527 P78527 2389 2394 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.048537 70.49 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11259000 0 11259000 11259000 0 11259000 0 0 0 3641 1427 3731 13047 19707 19707 1 FHHTIGGSR TSAGRKSRGLGKGHKFHHTIGGSRRAAWRR LGKGHKFHHTIGGSRRAAWRRRNTLQLHRY K F H S R R 0 1 0 0 0 0 0 2 2 1 0 0 0 1 0 1 1 0 0 0 0 0 9 0 1010.5046 A0A024R2Q4;P61313;B4DLP4 A0A024R2Q4 180 188 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 2;3 0.00067734 91.265 6 0.69499 0.95688 8.0139 5 Median 0.69499 0.95688 8.0139 5 0 Median NaN NaN NaN 0 0 Median 818410000 476070000 342340000 818410000 476070000 342340000 0 0 0 3642 92 3732 13048;13049;13050;13051;13052;13053 19708;19709;19710;19711;19712;19713;19714;19715 19711 8 FHINQPALK PQDLDSAIMRRMPTRFHINQPALKQREAIL RRMPTRFHINQPALKQREAILKLILKNENV R F H L K Q 1 0 1 0 0 1 0 0 1 1 1 1 0 1 1 0 0 0 0 0 0 0 9 0 1066.5924 Q8NBU5 Q8NBU5 255 263 ATAD1 ATPase family AAA domain-containing protein 1 yes yes 2 7.095E-05 110.63 2 0.47534 0.61186 NaN 1 Median 0.47534 0.61186 NaN 1 0 Median NaN NaN NaN 0 0 Median 15162000 11371000 3790400 15162000 11371000 3790400 0 0 0 3643 1649 3733 13054;13055 19716;19717 19717 2 FHNLEGFLEEFADIAK LEELFHLLNFLTPERFHNLEGFLEEFADIA HNLEGFLEEFADIAKEDQIKKLHDMLGPHM R F H A K E 2 0 1 1 0 0 3 1 1 1 2 1 0 3 0 0 0 0 0 0 0 0 16 0 1878.9152 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 898 913 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 1.7064E-19 164.63 2 0.87497 1.1068 18.913 2 Median 0.87497 1.1068 18.913 2 0 Median NaN NaN NaN 0 0 Median 41474000 24273000 17201000 41474000 24273000 17201000 0 0 0 3644 428 3734 13056;13057 19718;19719;19720;19721;19722 19718 5 FHPIQGHR YFQNHDAADKAAVVKFHPIQGHRVEVKKAV DKAAVVKFHPIQGHRVEVKKAVPKEDIYSG K F H H R V 0 1 0 0 0 1 0 1 2 1 0 0 0 1 1 0 0 0 0 0 0 0 8 0 990.51478 Q13151 Q13151 160 167 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 3 0.0040595 84.244 4 0.35158 0.4762 5.0963 4 Median 0.35158 0.4762 5.0963 4 0 Median NaN NaN NaN 0 0 Median 105360000 74567000 30791000 105360000 74567000 30791000 0 0 0 3645 1464 3735 13058;13059;13060;13061 19723;19724;19725;19726;19727;19728 19724 6 FHPSLR LDFGQEGFTRFRERRFHPSLRSTRRFYPHT GFTRFRERRFHPSLRSTRRFYPHTHNMDGF R F H L R S 0 1 0 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 0 0 0 0 6 0 755.40786 P46087 P46087 559 564 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 0.037527 80.377 1 1 0.57309 0.82377 5.2841 2 Median 0.64202 0.85513 NaN 1 0 Median 0.51157 0.79356 NaN 1 0 Median 59326000 36869000 22457000 30438000 18298000 12140000 28889000 18571000 10317000 3646 1343 3736 13062;13063 19729;19730 19729 2 FHQFLVSETESGNISR NLSRKILRKSPHLEKFHQFLVSETESGNIS HQFLVSETESGNISRQEAVSMIPPLLLNVR K F H S R Q 0 1 1 0 0 1 2 1 1 1 1 0 0 2 0 3 1 0 0 1 0 0 16 0 1849.8959 Q08J23;A0A140T9Y7 Q08J23 145 160 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 3 0.0043432 29.349 1 3.5592 4.7187 NaN 1 Median NaN NaN NaN 0 0 Median 3.5592 4.7187 NaN 1 0 Median 4584900 1119800 3465100 0 0 0 4584900 1119800 3465100 3647 1451 3737 13064 19731 19731 1 FHSIVR LLQPQVEESVLNLGKFHSIVRLVAFCPFAS EESVLNLGKFHSIVRLVAFCPFASSQVALE K F H V R L 0 1 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 1 0 0 6 0 757.42351 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 42 47 NOP56 Nucleolar protein 56 yes no 2 0.027549 120.06 2 0.58089 0.7981 28.043 2 Median 0.58089 0.7981 28.043 2 0 Median NaN NaN NaN 0 0 Median 146420000 88909000 57509000 146420000 88909000 57509000 0 0 0 3648 647 3738 13065;13066 19732;19733 19732 2 FHSPPDKDEAEAPSQK QPYSKDSPFGLSFVRFHSPPDKDEAEAPSQ HSPPDKDEAEAPSQKVTVTKLGQFRVKEED R F H Q K V 2 0 0 2 0 1 2 0 1 0 0 2 0 1 3 2 0 0 0 0 0 0 16 1 1781.822 A0A024R0S8;Q59HH7;P18887;F5H8D7;B4DEB2;B2RCY5;B4DTD3;M0R0D2;M0QYS5;M0QZ96;M0R1U8 A0A024R0S8 149 164 XRCC1 DNA repair protein XRCC1 yes no 3 0.0035235 69.485 2 1 0.82937 1.0226 47.949 3 Median 0.65429 0.80983 32.987 2 0 Median 1.2372 1.6731 NaN 1 0 Median 17469000 10845000 6623800 16279000 10105000 6173800 1190000 740010 450000 3649 42 3739 13067;13068;13069 19734;19735;19736;19737 19734 4 FHTITTSYYR KKIKLQIWDTAGQERFHTITTSYYRGAMGI AGQERFHTITTSYYRGAMGIMLVYDITNGK R F H Y R G 0 1 0 0 0 0 0 0 1 1 0 0 0 1 0 1 3 0 2 0 0 0 10 0 1287.6248 P61026;Q53T70 P61026 71 80 RAB10 Ras-related protein Rab-10 yes no 2 0.013859 81.548 2 0.69532 0.96575 6.6002 2 Median 0.69532 0.96575 6.6002 2 0 Median NaN NaN NaN 0 0 Median 9648600 5569800 4078800 9648600 5569800 4078800 0 0 0 3650 1391 3740 13070;13071 19738;19739;19740 19738 3 FHVDISLTDFIQK IHQLKVNGEDPYPHKFHVDISLTDFIQKYS HKFHVDISLTDFIQKYSHLQPGDHLTDITL K F H Q K Y 0 0 0 2 0 1 0 0 1 2 1 1 0 2 0 1 1 0 0 1 0 0 13 0 1561.814 Q15046;H3BVA8 Q15046 99 111 KARS Lysine--tRNA ligase yes no 3 0.00021359 48.659 1 0.41533 0.54628 NaN 1 Median 0.41533 0.54628 NaN 1 0 Median NaN NaN NaN 0 0 Median 5433900 3913500 1520400 5433900 3913500 1520400 0 0 0 3651 1502 3741 13072 19741 19741 1 FHVLSK HKKVDRKASKGRKLRFHVLSKLLSFMAPID KASKGRKLRFHVLSKLLSFMAPIDHTTMND R F H S K L 0 0 0 0 0 0 0 0 1 0 1 1 0 1 0 1 0 0 0 1 0 0 6 0 729.41736 Q9NY61 Q9NY61 517 522 AATF Protein AATF yes yes 2 0.035021 100.27 2 0.91989 1.1308 2.4314 2 Median 0.91989 1.1308 2.4314 2 0 Median NaN NaN NaN 0 0 Median 92283000 49225000 43058000 92283000 49225000 43058000 0 0 0 3652 1767 3742 13073;13074 19742;19743 19743 2 FIAHVPVPSQQEIEEALVR EEGSQEKGGDDSQQKFIAHVPVPSQQEIEE VPVPSQQEIEEALVRRKKMELLQKYASETL K F I V R R 2 1 0 0 0 2 3 0 1 2 1 0 0 1 2 1 0 0 0 3 0 0 19 0 2161.1532 Q9ULR0 Q9ULR0 239 257 ISY1 Pre-mRNA-splicing factor ISY1 homolog yes yes 3 1.8803E-05 54.288 2 0.47313 0.64362 13.87 2 Median 0.47313 0.64362 13.87 2 0 Median NaN NaN NaN 0 0 Median 12766000 8526600 4239200 12766000 8526600 4239200 0 0 0 3653 1792 3743 13075;13076 19744;19745 19744 2 FIAVGYVDDTQFVR YFSTSVSRPGRGEPRFIAVGYVDDTQFVRF RFIAVGYVDDTQFVRFDSDAASQRMEPRAP R F I V R F 1 1 0 2 0 1 0 1 0 1 0 0 0 2 0 0 1 0 1 3 0 0 14 0 1628.8199 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7NSS1;D7NSS0;D7NSR7;D7NSR0;D7NSQ8;D7NSQ7;D7NSQ6;D7NSQ4;D7NSQ3;D7NSQ2;D7NSQ1;D7NSQ0;D7NSP9;D7NSP8;D7NSP7;D7NSP6;D7NSP4;D7NSP3;D7NSP2;D7NSP1;D7NSP0;D7NSN9;D7NR16;D7NR15;D7NR13;D7NR12;D7NR08;D7NR06;D7NR04;D7NR03;D7NR02;D7NR00;D7NQZ9;D7NQZ8;D7NQZ5;D7NQZ4;D7NQY9;D7NQY7;D7NQY4;D7NQX6;D7NQX5;D7NQX4;D7NQW5;D7NQV6;D7NQV2;D7NQU8;D7NQU7;D7NQU3;D7NQU2;D7NQU1;D7NQU0;D7NQT9;D7NQT8;D7NQT7;D7NQT6;D7NQT5;D7NQT4;D7NQT3;D7NQT2;D7NQT1;D7NPQ3;D7NPP7;D7NPP5;D7NPN4;D7NPN3;D7NPN2;D7NPN1;D7NPM8;D7NPM7;D7NPM6;D7NPM5;D7NPM4;D7NPM3;D7NPM2;D7NPL7;D7NPL6;D7NPL5;D7NPL4;D7NPL3;D7NPL2;D7NPL1;D7NPC9;D7NPC6;D7NPB5;D7NPB3;D7NPB2;D7NPB0;D7NPA9;D7NPA8;D7NPA7;D7NPA6;D7NPA5;D7NPA4;D7NPA3;D7NPA2;D7NPA1;D7NPA0;D7NP99;D7NP98;D7NP97;D7NP96;D7NP95;D7NP94;D7NP92;D7NP91;D7NP90;D7NP89;D7NP88;D7NP87;D7NP86;D7NP85;D7NP84;D7NP83;D7NP82;D7NP81;D7NP80;D7NP79;D7NP78;D7NP74;D7NP72;D7NP67;D7NP65;D7NP63;D7NP60;D7NP59;D7NP51;D7NP49;D7NP48;D7NP47;D7NP45;D7NP42;D7NP39;D7NP33;D7NP31;D7NP30;D7NP29;D7NP02;D7NP00;D7NNZ4;D7NNZ1;D7NNY3;D7NNX1;D7NNV7;D7NNV0;D7NNU8;D7NNU4;D7NNU2;D7NNU1;D7NNU0;D7NNT9;D7NNT8;D7NNT6;D7NNT5;D7NNT3;D7NNS9;D7NNS7;D7NNS6;D7NNS5;D7NNS4;D7NNS3;D7NNS2;D7NNS1;D7NNS0;D7NNR9;D7NNR8;D7NNR7;D7NNR6;D7NNR5;D7NNR4;D7NNR3;D7NNR2;D7NNR1;D7NNR0;D7NNQ9;D7NNQ8;D7NNQ7;D7NNQ6;D7NNQ5;D7NNQ4;D7NNQ3;D7NNQ2;D7NNQ1;D7NNQ0;D7NNP9;D7NNP8;D7NNP7;D7NNP6;D7NNP5;D7NNP4;D7NNP3;D7NNP2;D7NNP1;D7NNP0;D7NNN9;D7NNN8;D7NNN7;D7NNN6;D7NNN5;D7NNN4;D7NNN3;D7NNN2;D7NNN1;D7NNN0;D7NNM9;D7NNM8;D7NNM7;D7NNM6;D7NNM5;D7NNM4;D7NNM3;D7NNM2;D7GN26;D7GN25;D7GN24;D7GN23;D7GN22;D7GL17;D7GL13;D7GK37;D7GK36;D7GK34;D6R7C8;D6QY05;D6QUR5;D6Q001;D6PZZ2;D6MLP6;D6MLP5;D6MLP4;D6MLP3;D6MLP2;D6MLP1;D6MLN9;D6MLN8;D6MLN7;D6MLN6;D6MLN5;D6MLN4;D6MLN3;D6MLN2;D6MLN1;D6MLN0;D6MLM9;D6MLM8;D6MLM7;D6MLM6;D6MLM5;D6MLM4;D6MLM3;D6MLL6;D6MLL5;D6MLL4;D6MLL3;D6MLL2;D6MLL1;D6MLL0;D6MLK9;D6MLK8;D6MLK7;D6MLK5;D6MLK4;D6MLK3;D6MLK2;D6MLK1;D6MLK0;D6MLJ8;D6MLJ7;D6MLJ6;D6MLJ5;D6MLJ4;D6MLJ3;D6MLJ2;D6MLJ1;D6MLJ0;D6MLI9;D6MLI8;D6MLI7;D6MLI6;D6MLI5;D6MLI3;D6MLI2;D6MLI1;D6MLI0;D6MLH9;D6MLH8;D6MLH7;D6MLH6;D6MLH5;D6MLH4;D6MLH3;D6MLH2;D6MLH1;D6MLH0;D6MLG6;D6MLG4;D6MLG2;D6MLF5;D6MLF4;D6MLF2;D6MLE7;D6MLE6;D6MLE2;D6MLD8;D6MLD7;D6MLD6;D6MLD1;D6MLC4;D6MLC0;D6MLB8;D6MLB6;D6MLB2;D6MLA8;D6MLA6;D6MLA5;D6MLA1;D6MLA0;D6ML91;D6ML87;D6ML64;D6ML63;D6ML62;D6ML61;D6ML60;D6ML59;D6ML58;D6ML57;D6ML56;D6ML55;D6ML54;D6ML53;D6ML52;D6ML51;D6ML49;D6ML48;D6ML47;D6ML46;D6ML45;D6ML44;D6ML43;D6ML42;D6ML41;D6ML40;D6ML39;D6ML38;D6ML37;D6ML36;D6ML35;D6ML34;D6ML33;D6ML32;D6ML31;D6ML30;D6ML29;D6ML28;D6ML27;D6ML26;D6ML25;D6ML24;D6ML23;D6ML22;D6ML21;D6ML20;D6ML19;D6ML18;D6ML17;D6ML16;D6ML15;D6ML14;D6ML13;D6ML12;D6ML11;D6ML10;D6ML09;D6ML08;D6ML07;D6ML06;D6ML05;D6ML03;D6ML02;D6ML01;D6ML00;D6MKZ9;D6MKZ8;D6MKZ7;D6MKZ6;D6MKZ5;D6MKZ4;D6MKZ3;D6MKZ2;D6MKZ1;D6MKZ0;D6MKY9;D6MKY8;D6MKY7;D6MKY4;D6MKY1;D6MKY0;D6MKX9;D6MKX4;D6MKX2;D6MKX0;D6MKW4;D6MKV7;D6MKV6;D6MKV4;D6MKV3;D6MKT1;D6MJK9;D6MJK6;D6MJK4;D6MJJ1;D6MJJ0;D6MJI9;D6MJI8;D6MJI7;D6MJI0;D6MJH2;D6MJH1;D6MJH0;D6MJG9;D6MJG8;D6MJG7;D6MJG6;D6MJG5;D6MJG4;D6MJG3;D6MJG2;D6MJG1;D6MJG0;D6MJF8;D6MJF7;D6MJF6;D6MJF5;D6MJF4;D6MJF3;D6MJF0;D6MJE8;D6MJE7;D6MJE6;D6MJE5;D6MJE4;D6MJE3;D6MJE2;D6MJE1;D6MJE0;D6MJD9;D6MJD8;D6MJD7;D6MJD6;D6MJD5;D6MJD4;D6MJD3;D6MJD2;D6MJD1;D6MJD0;D6MJC9;D6MJC8;D6MJC7;D6MJC6;D6MJC5;D6MJC4;D6MJC3;D6MJC2;D6MJB4;D6MJB3;D6MJB2;D6MJB1;D6MJB0;D6MJA9;D6MJA6;D6MJA5;D6MJA4;D6MJA3;D6MJA2;D6MJA1;D6MJA0;D6MJ99;D6MJ98;D6MJ97;D6MJ96;D6MJ95;D6MJ94;D6MJ93;D6MJ92;D6MJ90;D6MJ89;D6MJ88;D6MJ87;D6MJ86;D6MJ85;D6MJ84;D6MJ83;D6MJ82;D6MJ81;D6MJ80;D6MJ79;D6C6G9;D6C6G8;D6C6G5;D6C6G3;D6C6G1;D6C6G0;D6C6F6;D6C6E9;D6C6E7;D6C6E1;D6C6E0;D6C6D7;D6C6D0;D6C6C9;D6C6C8;D6C6C7;D6C6C6;D6C6C5;D6C6C4;D6C6C2;D6C6C0;D6C6B9;D6C6B7;D6C6B4;D6C6B3;D6C6B1;D6C6B0;D6C6A7;D6C6A6;D6C6A5;D6C6A4;D6C6A3;D6C6A2;D6C6A1;D6C6A0;D6C699;D6C698;D6C697;D6C527;D6C526;D6C525;D6C522;D6C521;D6BPR1;D6BPR0;D5M8H1;D5M8H0;D5M8G9;D5M8G8;D5M8G7;D5M8G6;D5M8G5;D5M8G4;D5M8G3;D5M8G2;D5M8G1;D5M8G0;D5M8F9;D5M8F8;D5M8F7;D5M8F6;D5M8F5;D5M8F4;D5M8F3;D5M8F2;D5M8F1;D5M8F0;D5M8E9;D5M8E8;D5M8E7;D5M8E5;D5M8E4;D5M8E3;D5M8E2;D5M8E1;D5M8D8;D5M8D5;D5M8D4;D5M8D3;D5M8D2;D5M8D1;D5M8C9;D5M8C7;D5M8C4;D5M8C1;D5M8C0;D5M8B7;D5M8B2;D5L9E6;D5L9E5;D5L9E2;D5L9D7;D5L9D6;D5L9D1;D5L9D0;D5L9C8;D5L9C6;D5L9C5;D5L9C0;D5L9B8;D5L9B6;D5L9B5;D5L9B4;D5L9B3;D5L9B2;D5L9B1;D5L9B0;D5L9A9;D5L9A8;D5L9A7;D5L9A6;D5L9A5;D5L9A4;D5L9A3;D5L9A1;D5L9A0;D5L999;D5L998;D5G2L1;D5G2L0;D5G2K7;D5G2K6;D5G2K5;D5G2K3;D5G2J4;D5G2J3;D5G2J2;D5G2J1;D5G2J0;D5G2I9;D5G246;D5G241;D5G240;D5G238;D5G237;D5G236;D5G235;D5FZW0;D5FZV9;D5FZV8;D5FZV6;D5FZV5;D5FZV3;D5FZV2;D5FZV1;D5FZV0;D5FZU9;D5FZU8;D5FZU7;D5FZU4;D5FZU3;D5FZU2;D5FZT8;D5FZT7;D5FZT4;D5FZT3;D5FZT0;D5FZS9;D5FZS8;D5FZR4;D5FZQ9;D5FZQ7;D5FZQ4;D5FZQ1;D5FZQ0;D5FZN7;D5FZN6;D5FZM5;D5FZM2;D5FZM0;D5FZL2;D5FZL1;D5FZK8;D5FZJ8;D5FZJ6;D5FZJ3;D5FZJ2;D5FZJ1;D5FZI9;D5FZI8;D5FZI7;D5FZI6;D5FZI5;D5FZI4;D5FZI3;D5FZI2;D5FZI1;D5FZI0;D5FZH9;D5FWE1;D5FWE0;D5FWD9;D5FWC7;D5FWC6;D5FWC4;D5FWC1;D5FWB8;D5FWB4;D5FWB3;D5FWB1;D5FWA8;D5FWA7;D5FWA5;D5FWA3;D5FWA1;D5FUF1;D5FUF0;D5FUE9;D5FUE8;D5FUE7;D5FUE4;D5FIH0;D5FIG9;D5FIG8;D5FIG7;D5FIG6;D5FIG5;D5FIG4;D5F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A0A0F7W082 46 59 HLA-A;HLA-C;HLA;HLA-B;HLA-Cw;HLA-A*31;HLA A;MHC class I HLA-A;HLA-A*0226;HLA-A*33;HLA-A24AK;HLA-A*02;HLA-DQB1;HLA-A*03;HLA-A*24;HLA-B52;HLA-B*35JAC;Cw*03;B*15;B*35;HLA-A*29;HLA-A null;HLA-B15;HLA-B1501V2;HLA-A2;HLA-B*3531;HLA-B*35SRE;HLA-B52v;HLA-B*5603;HLC-C;HLA-B*;HLA-B*1522;HLA-B*5501 variant;HLA-B*5101 variant;HLA-CW;HLA-B*15IL;HLA-B*15UL;HLA-B*15MD;HLA-B*51IM;HLA-A*0225;HLA-All;HLA-DRB1;HLA-B*58;HLA-A*2410;HLA-B51;HLA-A26;B*56;B-3501;HLA-Bw62.4;HLA-Bw62.1;HLA-Bw62.5;HLA-Bw62.3;HLA-B57;HLA-B*1513;HLA-B35;HLA-B*3512;HLA-A*01;HLAC HLA class I histocompatibility antigen, A-29 alpha chain;HLA class I histocompatibility antigen, A-74 alpha chain;HLA class I histocompatibility antigen, A-66 alpha chain;HLA class I histocompatibility antigen, A-43 alpha chain;HLA class I histocompatibility antigen, A-36 alpha chain;HLA class I histocompatibility antigen, A-34 alpha chain;HLA class I histocompatibility antigen, A-26 alpha chain;HLA class I histocompatibility antigen, A-23 alpha chain;HLA class I histocompatibility antigen, A-1 alpha chain;HLA class I histocompatibility antigen, A-25 alpha chain;HLA class I histocompatibility antigen, A-33 alpha chain;HLA class I histocompatibility antigen, A-31 alpha chain;HLA class I histocompatibility antigen, A-30 alpha chain;HLA class I histocompatibility antigen, A-11 alpha chain;HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-32 alpha chain;HLA class I histocompatibility antigen, A-24 alpha chain;HLA class I histocompatibility antigen, A-3 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain;HLA class I histocompatibility antigen, Cw-16 alpha chain;HLA class I histocompatibility antigen, Cw-12 alpha chain;HLA class I histocompatibility antigen, Cw-17 alpha chain;HLA class I histocompatibility antigen, B-59 alpha chain;HLA class I histocompatibility antigen, B-35 alpha chain;HLA class I histocompatibility antigen, B-78 alpha chain;HLA class I histocompatibility antigen, B-56 alpha chain;HLA class I histocompatibility antigen, B-55 alpha chain;HLA class I histocompatibility antigen, B-54 alpha chain;HLA class I histocompatibility antigen, B-53 alpha chain;HLA class I histocompatibility antigen, B-52 alpha chain;HLA class I histocompatibility antigen, B-46 alpha chain;HLA class I histocompatibility antigen, B-15 alpha chain;HLA class I histocompatibility antigen, B-57 alpha chain;HLA class I histocompatibility antigen, B-51 alpha chain;HLA class I histocompatibility antigen, B-58 alpha chain;HLA class I histocompatibility antigen, Cw-14 alpha chain;HLA class I histocompatibility antigen, Cw-4 alpha chain yes no 2 0.00026188 67.385 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7565700 0 7565700 0 0 0 7565700 0 7565700 3654 325 3744 13077;13078 19746;19747 19746 2 FIAYQFTDTPLQIK KIGEERATAISLMRKFIAYQFTDTPLQIKS KFIAYQFTDTPLQIKSVVAPEHVKGYIYVE K F I I K S 1 0 0 1 0 2 0 0 0 2 1 1 0 2 1 0 2 0 1 0 0 0 14 0 1683.8872 B4DZJ7;O00267;B4E0Q4 B4DZJ7 178 191 SUPT5H Transcription elongation factor SPT5 yes no 2 4.0105E-05 128.81 4 0.79008 0.98468 32.006 3 Median 0.79008 0.98468 32.006 3 0 Median NaN NaN NaN 0 0 Median 10460000 5113600 5346100 10460000 5113600 5346100 0 0 0 3655 879 3745 13079;13080;13081;13082 19748;19749;19750;19751;19752;19753 19749 5 FIDPFCK SKVGGKELLADQNLKFIDPFCKIAAKTKDH LLADQNLKFIDPFCKIAAKTKDHTLVQTIA K F I C K I 0 0 0 1 1 0 0 0 0 1 0 1 0 2 1 0 0 0 0 0 0 0 7 0 925.43677 Q14684;Q6PJM8 Q14684 192 198 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 2 0.040415 54.787 1 0.68924 0.87371 NaN 1 Median 0.68924 0.87371 NaN 1 0 Median NaN NaN NaN 0 0 Median 10410000 6366800 4043200 10410000 6366800 4043200 0 0 0 3656 1493 3746 13083 19754 19754 1 FIDPFCR TKVGAEELTADQNLKFIDPFCRIAARTKDS LTADQNLKFIDPFCRIAARTKDSLVLNNIT K F I C R I 0 1 0 1 1 0 0 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 7 0 953.44292 Q6PJJ2;P56182;B4DZM3;Q96J73 Q6PJJ2 198 204 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 2 0.010215 122.15 4 2 0.76301 1.041 11.245 6 Median 0.79869 1.0822 4.6438 4 0 Median 0.62246 0.87749 1.4055 2 0 Median 161230000 90386000 70843000 139570000 76786000 62782000 21661000 13600000 8061400 3657 1381 3747 13084;13085;13086;13087;13088;13089 19755;19756;19757;19758;19759;19760;19761 19758 7 FIEGISEK VDCCKTLDQAKAVLKFIEGISEKTLRSTVA QAKAVLKFIEGISEKTLRSTVALTAARGRG K F I E K T 0 0 0 0 0 0 2 1 0 2 0 1 0 1 0 1 0 0 0 0 0 0 8 0 921.48075 Q05CW7;Q9H0A0;A0A087WV29 Q9H0A0 267 274 NAT10 N-acetyltransferase 10 no no 2 0.0044012 110.81 3 1 0.85244 1.0674 2.3423 3 Plateau 0.84131 1.0891 2.8743 2 0 Median 0.66407 1.0674 NaN 1 0 Median 215160000 100780000 114370000 182180000 81575000 100600000 32980000 19210000 13770000 3658 1730;1443 3748 13090;13091;13092;13093 19762;19763;19764;19765;19766;19767 19762 6 FIEIAAR KLNTLLQRAPQCLGKFIEIAARKKRNFILD RAPQCLGKFIEIAARKKRNFILDQTNVSAA K F I A R K 2 1 0 0 0 0 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 7 0 818.46504 Q96BA7;B3KX72;B4DLR3;Q00839;Q7Z4Q5 Q96BA7 463 469 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 2 0.01028 122.15 3 0.35335 0.48525 10.011 3 Median 0.35335 0.48525 10.011 3 0 Median NaN NaN NaN 0 0 Median 266430000 194480000 71953000 266430000 194480000 71953000 0 0 0 3659 788 3749 13094;13095;13096 19768;19769;19770;19771 19771 4 FIFNYVYHPK KLYSLLKHLKLCHSRFIFNYVYHPKGARID LCHSRFIFNYVYHPKGARIDVSINECYDGS R F I P K G 0 0 1 0 0 0 0 0 1 1 0 1 0 2 1 0 0 0 2 1 0 0 10 0 1326.6761 J3QQW9;Q15022;A8K1U9 J3QQW9 451 460 SUZ12 Polycomb protein SUZ12 yes no 3 0.024396 45.598 2 0.79731 1.0254 2.5457 2 Median 0.79731 1.0254 2.5457 2 0 Median NaN NaN NaN 0 0 Median 20677000 11146000 9531200 20677000 11146000 9531200 0 0 0 3660 1143 3750 13097;13098 19772;19773 19772 2 FIIHAPPGEFNEVFNDVR EEQLSDEEKVRMAAKFIIHAPPGEFNEVFN HAPPGEFNEVFNDVRLLLNNDNLLREGAAH K F I V R L 1 1 2 1 0 0 2 1 1 2 0 0 0 3 2 0 0 0 0 2 0 0 18 0 2100.0429 Q53GE2;Q53GC7;A4D0V4;P47755;C9JUG7;F8W9N7;A0A0D9SET8 Q53GE2 20 37 CAPZA2 F-actin-capping protein subunit alpha-2 yes no 3 2.5603E-06 66.965 2 0.77197 1.0087 NaN 1 Median 0.77197 1.0087 NaN 1 0 Median NaN NaN NaN 0 0 Median 12906000 9807500 3098900 12906000 9807500 3098900 0 0 0 3661 545 3751 13099;13100 19774;19775 19774 2 FILSIAYSPDGK VESGKKEYSLDTRGKFILSIAYSPDGKYLA RGKFILSIAYSPDGKYLASGAIDGIINIFD K F I G K Y 1 0 0 1 0 0 0 1 0 2 1 1 0 1 1 2 0 0 1 0 0 0 12 0 1309.6918 Q9GZS3;H0YL19;H0YN81;H0YMF9;H3BQA8 Q9GZS3 150 161 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes no 2 5.2174E-12 128.03 4 0.59334 0.72747 1.8259 3 Median 0.59334 0.72747 1.8259 3 0 Median NaN NaN NaN 0 0 Median 61436000 34334000 27102000 61436000 34334000 27102000 0 0 0 3662 1729 3752 13101;13102;13103;13104 19776;19777;19778;19779;19780;19781;19782 19779 7 FILSLASCK RTEAHQDVVGRFNERFILSLASCKKCLVID GRFNERFILSLASCKKCLVIDDQLNILPIS R F I C K K 1 0 0 0 1 0 0 0 0 1 2 1 0 1 0 2 0 0 0 0 0 0 9 0 1037.558 Q05CW7;E9PMU0;Q9H0A0;A0A087WV29 Q9H0A0 187 195 NAT10 N-acetyltransferase 10 no no 2 0.0036586 84.743 3 2 0.73819 0.90684 16.037 5 Median 0.80327 0.99011 5.4382 3 0 Median 0.48491 0.73135 6.7415 2 0 Median 82528000 49382000 33145000 57296000 32404000 24892000 25231000 16978000 8253400 3663 1730;1443 3753 13105;13106;13107;13108;13109 19783;19784;19785;19786;19787;19788;19789;19790 19786 8 FILSLASCKK RTEAHQDVVGRFNERFILSLASCKKCLVID RFNERFILSLASCKKCLVIDDQLNILPISS R F I K K C 1 0 0 0 1 0 0 0 0 1 2 2 0 1 0 2 0 0 0 0 0 0 10 1 1165.6529 Q05CW7;E9PMU0;Q9H0A0;A0A087WV29 Q9H0A0 187 196 NAT10 N-acetyltransferase 10 no no 2;3 0.011964 55.531 2 0.74041 0.91612 15.033 2 Median 0.74041 0.91612 15.033 2 0 Median NaN NaN NaN 0 0 Median 21918000 11011000 10907000 21918000 11011000 10907000 0 0 0 3664 1730;1443 3754 13110;13111 19791;19792 19791 1 FIMESGAK LGGLAVRRACYGVLRFIMESGAKGCEVVVS ACYGVLRFIMESGAKGCEVVVSGKLRGQRA R F I A K G 1 0 0 0 0 0 1 1 0 1 0 1 1 1 0 1 0 0 0 0 0 0 8 0 881.43169 P23396;Q53G83;E9PL09;H0YEU2;A7E2S3;Q9NQS8 P23396 125 132 RPS3 40S ribosomal protein S3 yes no 2 0.0063835 107.59 2 0.77693 0.98287 13.129 2 Median 0.77693 0.98287 13.129 2 0 Median NaN NaN NaN 0 0 Median 15177000 8519700 6657700 15177000 8519700 6657700 0 0 0 3665 1293 3755 13112;13113 19793;19794 19793 2 FINFQLR VLASICVTQAFMMWKFINFQLRRWREHSAF TQAFMMWKFINFQLRRWREHSAFQAPAVKK K F I L R R 0 1 1 0 0 1 0 0 0 1 1 0 0 2 0 0 0 0 0 0 0 0 7 0 936.51814 G3XAN4;Q6FHL3;A8K032;Q15629 G3XAN4 229 235 TRAM1 Translocating chain-associated membrane protein;Translocating chain-associated membrane protein 1 yes no 2 0.014485 80.377 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3666 575 3756 13114 19795 19795 1 FINLQPSTLTDK KTLIAKATAKEAGCRFINLQPSTLTDKWYG GCRFINLQPSTLTDKWYGESQKLAAAVFSL R F I D K W 0 0 1 1 0 1 0 0 0 1 2 1 0 1 1 1 2 0 0 0 0 0 12 0 1375.7347 Q8NBU5;B4E2J1 Q8NBU5 154 165 ATAD1 ATPase family AAA domain-containing protein 1 yes no 2 0.011605 51.445 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3075900 0 3075900 3075900 0 3075900 0 0 0 3667 1649 3757 13115 19796 19796 1 FINNEYYPADLQVAPTQDLR RVEPRSRELSPLFLRFINNEYYPADLQVAP YYPADLQVAPTQDLRRKGKGMVAEEIEEEP R F I L R R 2 1 2 2 0 2 1 0 0 1 2 0 0 1 2 0 1 0 2 1 0 0 20 0 2366.1543 O75691 O75691 849 868 UTP20 Small subunit processome component 20 homolog yes yes 2 2.4284E-25 164.88 4 0.98624 1.336 8.4783 4 Median 0.98624 1.336 8.4783 4 0 Median NaN NaN NaN 0 0 Median 30970000 14771000 16200000 30970000 14771000 16200000 0 0 0 3668 1207 3758 13116;13117;13118;13119 19797;19798;19799;19800;19801;19802;19803;19804 19800 8 FINYVK ASIEKGGSLPKVEAKFINYVKNCFRMTDQE GSLPKVEAKFINYVKNCFRMTDQEAIQDLW K F I V K N 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 1 1 0 0 6 0 782.43268 A0A0S2Z4G7;A0A0S2Z491;P06748;Q9BTI9;V9HVU7;A0A024RAP1 A0A0S2Z4G7 239 244 NPM1;CLEC2D Nucleophosmin yes no 2 0.030622 117.54 2 0.6609 0.87279 5.0793 2 Median 0.6609 0.87279 5.0793 2 0 Median NaN NaN NaN 0 0 Median 391840000 226040000 165800000 391840000 226040000 165800000 0 0 0 3669 462 3759 13120;13121 19805;19806 19805 2 FIPDDITFDDEPK DGLEFESSCSFIDLRFIPDDITFDDEPKDV LRFIPDDITFDDEPKDVASEVNLTAYKPKY R F I P K D 0 0 0 4 0 0 1 0 0 2 0 1 0 2 2 0 1 0 0 0 0 0 13 0 1550.7141 Q9H501;Q05C10;A0JLU5;A0A087WX71 Q9H501 469 481 ESF1 ESF1 homolog yes no 2 0.00062133 64.439 1 1 0.77472 0.97727 NaN 1 Median 0.77472 0.97727 NaN 1 0 Median NaN NaN NaN 0 0 Median 11191000 3784400 7406400 7464000 3784400 3679600 3726800 0 3726800 3670 1734 3760 13122;13123 19807;19808;19809 19808 3 FIPGPPGNK TFQENTQSISVRGIKFIPGPPGNKDLCFTW SVRGIKFIPGPPGNKDLCFTWREFSDFIRV K F I N K D 0 0 1 0 0 0 0 2 0 1 0 1 0 1 3 0 0 0 0 0 0 0 9 0 925.50215 A6NHR9;J3KTL8 A6NHR9 1224 1232 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.04021 68.422 2 0.75387 0.96646 1.861 2 Median 0.75387 0.96646 1.861 2 0 Median NaN NaN NaN 0 0 Median 14153000 8008200 6144300 14153000 8008200 6144300 0 0 0 3671 568 3761 13124;13125 19810;19811 19811 2 FIQTFGK LGDPKAPGLGAFRRKFIQTFGKEFDKHFGK GLGAFRRKFIQTFGKEFDKHFGKGGSKLLR K F I G K E 0 0 0 0 0 1 0 1 0 1 0 1 0 2 0 0 1 0 0 0 0 0 7 0 839.45414 P78527 P78527 3632 3638 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.012422 114.19 3 0.50705 0.62631 26.075 3 Median 0.50705 0.62631 26.075 3 0 Median NaN NaN NaN 0 0 Median 35195000 25001000 10194000 35195000 25001000 10194000 0 0 0 3672 1427 3762 13126;13127;13128 19812;19813;19814 19813 3 FITDNTVEER RAHRIGQTKTVRVFRFITDNTVEERIVERA VRVFRFITDNTVEERIVERAEMKLRLDSIV R F I E R I 0 1 1 1 0 0 2 0 0 1 0 0 0 1 0 0 2 0 0 1 0 0 10 0 1222.583 O60264;B7ZAX9;B4DZC0;Q4W5H1 O60264 607 616 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 7.494E-08 128.36 4 1 2.0205 2.7634 6.4672 4 Median 2.0205 2.7634 6.4672 4 0 Median NaN NaN NaN 0 0 Median 318030000 87837000 230190000 275510000 87837000 187670000 42519000 0 42519000 3673 1189 3763 13129;13130;13131;13132;13133 19815;19816;19817;19818;19819;19820 19819 6 FITHAPPGEFNEVFNDVR DDRVSDEEKVRIAAKFITHAPPGEFNEVFN HAPPGEFNEVFNDVRLLLNNDNLLRDGAAH K F I V R L 1 1 2 1 0 0 2 1 1 1 0 0 0 3 2 0 1 0 0 2 0 0 18 0 2088.0065 A8K0T9;A0A024R0E5;P52907 A8K0T9 20 37 CAPZA1 F-actin-capping protein subunit alpha-1 yes no 3 9.6801E-11 117.18 4 0.86877 1.1549 6.883 3 Median 0.86877 1.1549 6.883 3 0 Median NaN NaN NaN 0 0 Median 67322000 37698000 29624000 67322000 37698000 29624000 0 0 0 3674 32 3764 13134;13135;13136;13137 19821;19822;19823;19824;19825;19826;19827;19828;19829 19821 9 FITYPFDQNR VKYCNSLPDIPFDPKFITYPFDQNRFVQYK PFDPKFITYPFDQNRFVQYKATSLEKQHKH K F I N R F 0 1 1 1 0 1 0 0 0 1 0 0 0 2 1 0 1 0 1 0 0 0 10 0 1299.6248 A0A024R0H6;Q8N7H5 A0A024R0H6 48 57 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 0.0002866 104.2 3 0.72695 0.97818 3.7664 2 Median 0.72695 0.97818 3.7664 2 0 Median NaN NaN NaN 0 0 Median 32976000 21441000 11534000 32976000 21441000 11534000 0 0 0 3675 36 3765 13138;13139;13140 19830;19831;19832;19833 19833 4 FIVDQTQTPNLK RDSFPFDQQFNILMRFIVDQTQTPNLKVKV LMRFIVDQTQTPNLKVKVAILKYIESLARQ R F I L K V 0 0 1 1 0 2 0 0 0 1 1 1 0 1 1 0 2 0 0 1 0 0 12 0 1402.7456 B7Z5R7;B7Z4E5;B7Z7Q8;H0Y5T1;F8WA11;Q7Z460;B7Z7C4;Q68D09;B7Z2P0 B7Z5R7 717 728 CLASP1;DKFZp686D1968 CLIP-associating protein 1 yes no 2 0.035617 42.336 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1048200 1048200 0 1048200 1048200 0 0 0 0 3676 907 3766 13141 19834 19834 1 FKDEQIDILVATDVAAR HGNLSQTQRLEALRRFKDEQIDILVATDVA DEQIDILVATDVAARGLDIEGVKTVINFTM R F K A R G 3 1 0 3 0 1 1 0 0 2 1 1 0 1 0 0 1 0 0 2 0 0 17 1 1903.0051 B7Z6D5;B3GQE6;Q96GQ7;Q53G15 B7Z6D5 478 494 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 3 0.00016553 79.92 3 0.85375 1.1303 3.9587 3 Median 0.85375 1.1303 3.9587 3 0 Median NaN NaN NaN 0 0 Median 66426000 36034000 30392000 66426000 36034000 30392000 0 0 0 3677 750 3767 13142;13143;13144 19835;19836;19837;19838 19837 4 FKDPNAPK EMKTYIPPKGETKKKFKDPNAPKRPPSAFF KGETKKKFKDPNAPKRPPSAFFLFCSEYRP K F K P K R 1 0 1 1 0 0 0 0 0 0 0 2 0 1 2 0 0 0 0 0 0 0 8 1 915.48142 Q5T7C4;B7Z965;Q59GW1;A0A024RDR0;P09429;B3KQ05;B2RPK0;D3DQY9;Q53TD0;P23497 Q5T7C4 89 96 HMGB1;HMGB1P1;hCG_1991922;SP100 High mobility group protein B1;Putative high mobility group protein B1-like 1;Nuclear autoantigen Sp-100 yes no 2 0.04648 69.105 1 0.74134 1.1393 NaN 1 Median NaN NaN NaN 0 0 Median 0.74134 1.1393 NaN 1 0 Median 5602300 3328600 2273800 0 0 0 5602300 3328600 2273800 3678 322 3768 13145 19839 19839 1 FKLDLDFPNLPYLLDGK GEAPDYDRSQWLDVKFKLDLDFPNLPYLLD LDLDFPNLPYLLDGKNKITQSNAILRYIAR K F K G K N 0 0 1 3 0 0 0 1 0 0 5 2 0 2 2 0 0 0 1 0 0 0 17 1 2007.0717 Q6FGJ9;Q59EJ5;P21266;A4UJ43;A0A0A0MTN3 Q6FGJ9 55 71 GSTM3 Glutathione S-transferase Mu 3 yes no 3 4.3205E-10 90.379 2 0.24209 0.29723 13.944 2 Median 0.24209 0.29723 13.944 2 0 Median NaN NaN NaN 0 0 Median 60747000 49711000 11035000 60747000 49711000 11035000 0 0 0 3679 1286 3769 13146;13147 19840;19841;19842 19841 3 FLAAGTHLGGTNLDFQMEQYIYK GALDVLQMKEEDVLKFLAAGTHLGGTNLDF GGTNLDFQMEQYIYKRKSDGIYIINLKRTW K F L Y K R 2 0 1 1 0 2 1 3 1 1 3 1 1 2 0 0 2 0 2 0 0 0 23 0 2616.2683 C9J9K3;A0A024R2P0;A0A0C4DG17;P08865;A0A024R7P5;Q96RS2;F8WD59 C9J9K3 18 40 RPSA;LOC388524 40S ribosomal protein SA yes no 3 1.7816E-12 110.67 8 1 0.9255 1.1853 42.432 8 Median 0.91532 1.1848 12.486 7 0 Median 2.3112 3.5697 NaN 1 0 Median 128680000 66261000 62418000 105340000 57780000 47561000 23338000 8481400 14857000 3680 90 3770;3771 13148;13149;13150;13151;13152;13153;13154;13155;13156 19843;19844;19845;19846;19847;19848;19849;19850;19851;19852;19853;19854;19855;19856;19857;19858 19849 51 16 FLANVSTVLTSK LPSDFTPAVHASLDKFLANVSTVLTSKYR_ LDKFLANVSTVLTSKYR_____________ K F L S K Y 1 0 1 0 0 0 0 0 0 0 2 1 0 1 0 2 2 0 0 2 0 0 12 0 1278.7184 CON__P01966 CON__P01966 129 140 yes yes 2 0.0017727 107.11 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19718000 19718000 0 19718000 19718000 0 0 0 0 + 3681 948 3772 13157;13158 19859;19860 19860 2 FLASDLDQK TKKTKKHLPEPVAIKFLASDLDQKMKSISL EPVAIKFLASDLDQKMKSISLASCHQLHSK K F L Q K M 1 0 0 2 0 1 0 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 9 0 1035.5237 O75691;B4DN27 O75691 2520 2528 UTP20 Small subunit processome component 20 homolog yes no 2 0.0072685 84.498 3 1 1.2186 1.5467 17.034 3 Plateau 1.1587 1.4633 7.8331 2 0 Median 0.80331 1.1071 NaN 1 0 Median 21092000 9640800 11452000 15839000 7357900 8481200 5253300 2282900 2970400 3682 1207 3773 13159;13160;13161;13162 19861;19862;19863;19864;19865 19864 5 FLATEGAPDFLCPEELEHVSR AVDALAEGGSEAYSRFLATEGAPDFLCPEE APDFLCPEELEHVSRHLRPPQYVTREPPEG R F L S R H 2 1 0 1 1 0 4 1 1 0 3 0 0 2 2 1 1 0 0 1 0 0 21 0 2416.1369 Q6ZRV2;F4ZCG5;F4ZCG4 Q6ZRV2 46 66 FAM83H Protein FAM83H yes no 3 0.00015218 69.747 1 0.2798 0.38067 NaN 1 Median 0.2798 0.38067 NaN 1 0 Median NaN NaN NaN 0 0 Median 3083700 2142600 941150 3083700 2142600 941150 0 0 0 3683 1603 3774 13163 19866 19866 1 FLAVGLVDNTVR CMSLANVPPGEQRSRFLAVGLVDNTVRIIS RSRFLAVGLVDNTVRIISLDPSDCLQPLSM R F L V R I 1 1 1 1 0 0 0 1 0 0 2 0 0 1 0 0 1 0 0 3 0 0 12 0 1302.7296 A8K6V3;Q15393;B3KQH1 A8K6V3 604 615 SF3B3 Splicing factor 3B subunit 3 yes no 2 0.0018184 99.568 1 2 0.50006 0.69276 NaN 1 Median 0.50006 0.69276 NaN 1 0 Median NaN NaN NaN 0 0 Median 10921000 5261900 5659000 4614400 3116000 1498400 6306500 2145900 4160600 3684 628 3775 13164;13165;13166 19867;19868;19869 19867 3 FLCIFLEK LNSIEFRECREEILKFLCIFLEKMGQKIAP CREEILKFLCIFLEKMGQKIAPYSVEIKNT K F L E K M 0 0 0 0 1 0 1 0 0 1 2 1 0 2 0 0 0 0 0 0 0 0 8 0 1068.5678 P78527;B4DL41 P78527 88 95 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.005941 86.794 3 0.42473 0.54129 NaN 1 Median 0.42473 0.54129 NaN 1 0 Median NaN NaN NaN 0 0 Median 11213000 8062200 3151000 11213000 8062200 3151000 0 0 0 3685 1427 3776 13167;13168;13169 19870;19871;19872;19873;19874 19872 5 FLDDLGNAK SLKLATRIIDEVVNKFLDDLGNAKSHLMSL DEVVNKFLDDLGNAKSHLMSLYSACSSEVP K F L A K S 1 0 1 2 0 0 0 1 0 0 2 1 0 1 0 0 0 0 0 0 0 0 9 0 991.49746 B3KN59;B3KM36;O95816 B3KN59 124 132 BAG2 BAG family molecular chaperone regulator 2 yes no 2 0.0010194 106.14 2 2 1.0166 1.3921 74.192 4 Median 0.59175 0.73077 2.537 2 0 Median 1.7673 2.6406 1.9344 2 0 Median 65708000 36784000 28924000 50646000 30766000 19880000 15062000 6018100 9043400 3686 751 3777 13170;13171;13172;13173 19875;19876;19877;19878;19879 19875 5 FLDGIYVSEK LIQQATTVKNKDIRKFLDGIYVSEKGTVQQ KDIRKFLDGIYVSEKGTVQQADE_______ K F L E K G 0 0 0 1 0 0 1 1 0 1 1 1 0 1 0 1 0 0 1 1 0 0 10 0 1169.5968 Q53Z07;P32969;H0Y9V9;D6RAN4;Q2NKY6;H0Y9R4 Q53Z07 175 184 RPL9 60S ribosomal protein L9 yes no 2 1.9092E-05 112.11 8 2 0.7534 1.1181 9.9281 4 Median 0.8893 1.1739 16.145 2 0 Median 0.70729 1.1181 3.3577 2 0 Median 973550000 454100000 519440000 684330000 284420000 399910000 289220000 169680000 119540000 3687 1314 3778 13174;13175;13176;13177;13178;13179;13180;13181;13182;13183 19880;19881;19882;19883;19884;19885;19886;19887;19888;19889;19890;19891 19888 12 FLDGNELTLADCNLLPK VDETSAEDEGVSQRKFLDGNELTLADCNLL DGNELTLADCNLLPKLHIVQVVCKKYRGFT K F L P K L 1 0 2 2 1 0 1 1 0 0 5 1 0 1 1 0 1 0 0 0 0 0 17 0 1931.9663 Q5SRT3;Q53FB0;O00299 Q5SRT3 167 183 CLIC1 Chloride intracellular channel protein;Chloride intracellular channel protein 1 yes no 2 1.6264E-06 111.79 3 0.61342 0.78889 0.76153 2 Median 0.61342 0.78889 0.76153 2 0 Median NaN NaN NaN 0 0 Median 8551500 6276800 2274700 8551500 6276800 2274700 0 0 0 3688 1166 3779 13184;13185;13186 19892;19893;19894 19893 3 FLDQNLQK RLARDANSENCNKNKFLDQNLQKYQAECSQ ENCNKNKFLDQNLQKYQAECSQFKAKLASL K F L Q K Y 0 0 1 1 0 2 0 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 8 0 1004.5291 P15924;Q4LE79;B4E2A0;B4DKX6 P15924 1057 1064 DSP;DSP variant protein Desmoplakin yes no 2 0.006813 99.375 3 0.24003 0.30223 0.0033468 2 Median 0.24003 0.30223 0.0033468 2 0 Median NaN NaN NaN 0 0 Median 17949000 15312000 2637200 17949000 15312000 2637200 0 0 0 3689 1270 3780 13187;13188;13189 19895;19896;19897 19896 3 FLDQSLGEQVVK MKSISLASCHQLHSKFLDQSLGEQVVKNLL HSKFLDQSLGEQVVKNLLFAAKVLYLLELY K F L V K N 0 0 0 1 0 2 1 1 0 0 2 1 0 1 0 1 0 0 0 2 0 0 12 0 1361.7191 O75691;B4DN27 O75691 2544 2555 UTP20 Small subunit processome component 20 homolog yes no 2 0.00054788 92.538 4 1.0794 1.3713 11.433 2 Median 1.0794 1.3713 11.433 2 0 Median NaN NaN NaN 0 0 Median 34043000 15670000 18374000 34043000 15670000 18374000 0 0 0 3690 1207 3781 13190;13191;13192;13193 19898;19899;19900;19901;19902 19899 5 FLDSTADQQECPR VHNIEESCFQFLKFKFLDSTADQQECPRKK FKFLDSTADQQECPRKKCFSSHCQKTDLKL K F L P R K 1 1 0 2 1 2 1 0 0 0 1 0 0 1 1 1 1 0 0 0 0 0 13 0 1565.678 A8K4Q6;O14867;C9JMP6;C9IYR0;C9IYH8 A8K4Q6 130 142 BACH1 Transcription regulator protein BACH1 yes no 2 0.02028 87.184 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3691 607 3782 13194 19903 19903 1 FLEDGPCQQAAQVLIR GLSELRSELYFLIARFLEDGPCQQAAQVLI LEDGPCQQAAQVLIREVAEKELLPRRTDWT R F L I R E 2 1 0 1 1 3 1 1 0 1 2 0 0 1 1 0 0 0 0 1 0 0 16 0 1843.9251 Q8WWQ0 Q8WWQ0 22 37 PHIP PH-interacting protein yes yes 2 1.1237E-43 203.51 4 0.8704 1.1743 10.655 4 Median 0.8704 1.1743 10.655 4 0 Median NaN NaN NaN 0 0 Median 108370000 58533000 49836000 108370000 58533000 49836000 0 0 0 3692 1668 3783 13195;13196;13197;13198 19904;19905;19906;19907;19908;19909;19910;19911 19905 8 FLEEFITPIVK INFIHHNWPSLLRHRFLEEFITPIVKVSKN LRHRFLEEFITPIVKVSKNKQEMAFYSLPE R F L V K V 0 0 0 0 0 0 2 0 0 2 1 1 0 2 1 0 1 0 0 1 0 0 11 0 1334.7486 P11388 P11388 569 579 TOP2A DNA topoisomerase 2-alpha yes yes 2 5.896E-20 205.12 33 9 0.88572 1.2422 17.074 20 Median 0.91793 1.1804 19.608 14 0 Median 0.82953 1.3113 3.9518 6 0 Median 2681700000 1467200000 1214500000 1370700000 732760000 637950000 1310900000 734420000 576520000 3693 1256 3784 13199;13200;13201;13202;13203;13204;13205;13206;13207;13208;13209;13210;13211;13212;13213;13214;13215;13216;13217;13218;13219;13220;13221;13222;13223;13224;13225;13226;13227;13228;13229;13230;13231;13232;13233;13234;13235;13236;13237;13238;13239;13240 19912;19913;19914;19915;19916;19917;19918;19919;19920;19921;19922;19923;19924;19925;19926;19927;19928;19929;19930;19931;19932;19933;19934;19935;19936;19937;19938;19939;19940;19941;19942;19943;19944;19945;19946;19947;19948;19949;19950;19951;19952;19953;19954;19955;19956;19957;19958;19959;19960;19961;19962;19963;19964;19965;19966;19967;19968;19969;19970;19971;19972;19973;19974;19975;19976;19977;19978;19979;19980;19981;19982;19983 19928 71 FLEETNCLYAAEGQR MLSDLQVYKDSFELKFLEETNCLYAAEGQR FLEETNCLYAAEGQRLMQEREVPEYLNHVS K F L Q R L 2 1 1 0 1 1 3 1 0 0 2 0 0 1 0 0 1 0 1 0 0 0 15 0 1799.8148 Q13619;A0A0A0MR50;B2RBV7 Q13619 235 249 CUL4A Cullin-4A yes no 2 2.5861E-27 166.04 5 0.64621 0.8598 16.67 2 Median 0.64621 0.8598 16.67 2 0 Median NaN NaN NaN 0 0 Median 20387000 8820300 11567000 20387000 8820300 11567000 0 0 0 3694 1474 3785 13241;13242;13243;13244;13245 19984;19985;19986;19987;19988;19989;19990;19991 19986 8 FLEFQYLTGGLVDPEVHGR EAVKEKWLPYEAGQRFLEFQYLTGGLVDPE QYLTGGLVDPEVHGRISTEEAIRKGFIDGR R F L G R I 0 1 0 1 0 1 2 3 1 0 3 0 0 2 1 0 1 0 1 2 0 0 19 0 2176.0953 P15924;Q4LE79;B4E2A0 P15924 2726 2744 DSP;DSP variant protein Desmoplakin yes no 3 0.013768 22.653 2 0.41433 0.56338 1.2396 2 Median 0.41433 0.56338 1.2396 2 0 Median NaN NaN NaN 0 0 Median 11381000 8211400 3169300 11381000 8211400 3169300 0 0 0 3695 1270 3786 13246;13247 19992;19993 19992 2 FLEGTSCIAGVFVDATK EGLTSIEEVTKNLQKFLEGTSCIAGVFVDA EGTSCIAGVFVDATKERLSVYQAMKKGIIR K F L T K E 2 0 0 1 1 0 1 2 0 1 1 1 0 2 0 1 2 0 0 2 0 0 17 0 1813.892 Q15149;D3DWL0;Q96IE3 Q15149 4065 4081 PLEC;PLEC1 Plectin yes no 2 2.2403E-18 162.48 4 0.60009 0.76035 14.898 3 Median 0.60009 0.76035 14.898 3 0 Median NaN NaN NaN 0 0 Median 26482000 17245000 9236600 26482000 17245000 9236600 0 0 0 3696 1507 3787 13248;13249;13250;13251 19994;19995;19996;19997;19998;19999;20000 19995 7 FLEGVR NPEVLDITEETLHSRFLEGVRNVASVCLQI ITEETLHSRFLEGVRNVASVCLQIGYPTVA R F L V R N 0 1 0 0 0 0 1 1 0 0 1 0 0 1 0 0 0 0 0 1 0 0 6 0 719.39662 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VWS0;Q53HK9;F8VW21;F8VU65;F8VZS0;B4E3D5;Q8NHW5;Q3MHV2 Q53HW2 215 220 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 0.035481 107.15 2 2 0.77828 1.1509 24.83 4 Median 0.6869 0.93841 15.742 2 0 Median 0.85703 1.3747 11.999 2 0 Median 319990000 188890000 131100000 226690000 138430000 88265000 93302000 50462000 42840000 3697 281 3788 13252;13253;13254;13255 20001;20002;20003;20004 20003 4 FLELQK EELSPPSHQAKREIRFLELQKVASSSSGNN SHQAKREIRFLELQKVASSSSGNNFLSGSP R F L Q K V 0 0 0 0 0 1 1 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 6 0 776.44324 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;F5H0Z7;F5H763;Q86XH4;A8K394;Q4LE64;Q14980 Q4LE64 181 186 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.037527 80.377 1 0.76683 0.94609 NaN 1 Median 0.76683 0.94609 NaN 1 0 Median NaN NaN NaN 0 0 Median 26661000 15318000 11342000 26661000 15318000 11342000 0 0 0 3698 148;1499;590 3789 13256 20005 20005 1 FLENFCHSLQCDNLLSSQPFSSSR SIQLPPVNSASFALRFLENFCHSLQCDNLL QCDNLLSSQPFSSSRGHTHSSAEHDKNQSA R F L S R G 0 1 2 1 2 2 1 0 1 0 4 0 0 3 1 6 0 0 0 0 0 0 24 0 2872.2909 Q9UQR0;B4DZR9;B4DRC2 Q9UQR0 448 471 SCML2 Sex comb on midleg-like protein 2 yes no 3 0.012738 19.324 1 0.47771 0.65727 NaN 1 Median 0.47771 0.65727 NaN 1 0 Median NaN NaN NaN 0 0 Median 4583400 3055100 1528300 4583400 3055100 1528300 0 0 0 3699 1799 3790 13257 20006 20006 1 FLEQQNQVLETK KALNNKFASFIDKVRFLEQQNQVLETKWNL KVRFLEQQNQVLETKWNLLQQLDLNNCRKN R F L T K W 0 0 1 0 0 3 2 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 12 0 1475.762 CON__Q14CN4-1;CON__Q6IME9;Q14CN4;CON__Q3SY84;Q3SY84;H0YIG3 CON__Q14CN4-1 145 156 KRT72;KRT71 Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 71 no no 2 1.0994E-10 158.47 6 5 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51140000 51140000 0 14715000 14715000 0 36425000 36425000 0 + 3700 967 3791 13258;13259;13260;13261;13262;13263;13264;13265;13266;13267;13268 20007;20008;20009;20010;20011;20012;20013;20014;20015;20016;20017;20018;20019;20020 20009 14 FLEQQNQVLQTK KSLNNQFASFIDKVRFLEQQNQVLQTKWEL KVRFLEQQNQVLQTKWELLQQVDTSTRTHN R F L T K W 0 0 1 0 0 4 1 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 12 0 1474.778 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2;CON__P35908;P35908 H6VRG3 200 211 KRT1;KRT2 Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 2 epidermal no no 2 1.5504E-122 271.21 10 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1517900000 1517900000 0 1090300000 1090300000 0 427640000 427640000 0 + 3701 1113;1114;964 3792 13269;13270;13271;13272;13273;13274;13275;13276;13277;13278;13279;13280;13281 20021;20022;20023;20024;20025;20026;20027;20028;20029;20030;20031;20032;20033;20034;20035;20036;20037;20038;20039 20021 19 FLEQQTLCNNQVNDLTTALK QALKVKLEMKEERVRFLEQQTLCNNQVNDL TLCNNQVNDLTTALKEMEQLLEM_______ R F L L K E 1 0 3 1 1 3 1 0 0 0 4 1 0 1 0 0 3 0 0 1 0 0 20 0 2349.1635 V9GY01;Q9Y448 V9GY01 211 230 KNSTRN Small kinetochore-associated protein yes no 2 0.00075114 107.69 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3702 1823 3793 13282 20040 20040 1 FLEQSMDIEDLK EYVPPKPKPSRVKEKFLEQSMDIEDLKYCS KEKFLEQSMDIEDLKYCSEHSVNEHEDGDG K F L L K Y 0 0 0 2 0 1 2 0 0 1 2 1 1 1 0 1 0 0 0 0 0 0 12 0 1466.6963 Q59HG1;O95239;B4DYE2;Q2VIQ3;B3KNC0 Q59HG1 1037 1048 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.00019605 76.228 1 2 0.68681 1.0826 22.439 3 Plateau 0.56321 0.73977 NaN 1 0 Median 0.68471 1.0909 1.0798 2 0 Median 78342000 45134000 33208000 1988200 917840 1070400 76354000 44216000 32137000 3703 1216 3794 13283;13284;13285 20041;20042;20043;20044;20045 20043 453 5 FLESLPEEEQQR KCDQKKKDYEVELLRFLESLPEEEQQRVLG LLRFLESLPEEEQQRVLGEEKMLNINKKQA R F L Q R V 0 1 0 0 0 2 4 0 0 0 2 0 0 1 1 1 0 0 0 0 0 0 12 0 1503.7205 E9PKP7;P17480;A8K962;B4DNQ1;O00164;B4DLB0 E9PKP7 324 335 UBTF Nucleolar transcription factor 1 yes no 2 1.4623E-12 133.23 4 2 0.82993 1.3309 8.1042 6 Linear 0.96511 1.3292 8.724 4 0 Linear 0.80614 1.3181 0.062766 2 0 Median 476560000 260480000 216080000 278550000 148370000 130180000 198010000 112110000 85905000 3704 1039 3795 13286;13287;13288;13289;13290;13291 20046;20047;20048;20049;20050;20051;20052;20053;20054;20055;20056;20057;20058;20059;20060 20052 15 FLESLPEEEQQRVLGEEK KCDQKKKDYEVELLRFLESLPEEEQQRVLG SLPEEEQQRVLGEEKMLNINKKQATSPASK R F L E K M 0 1 0 0 0 2 6 1 0 0 3 1 0 1 1 1 0 0 0 1 0 0 18 1 2159.0746 E9PKP7;P17480;A8K962;B4DNQ1;O00164;B4DLB0 E9PKP7 324 341 UBTF Nucleolar transcription factor 1 yes no 3 0.0029883 59.15 1 1.1071 1.4889 NaN 1 Median 1.1071 1.4889 NaN 1 0 Median NaN NaN NaN 0 0 Median 6096200 2927900 3168300 6096200 2927900 3168300 0 0 0 3705 1039 3796 13292 20061 20061 1 FLESPDFQPNIAK AAWPHLQLVYEFFLRFLESPDFQPNIAKKY LRFLESPDFQPNIAKKYIDQKFVLALLDLF R F L A K K 1 0 1 1 0 1 1 0 0 1 1 1 0 2 2 1 0 0 0 0 0 0 13 0 1504.7562 B4DSD7;E9PFR3;A8K6Y2;A0A024RD11;Q14738;Q86U13;Q96B13;Q96L51;Q96L52;Q7L7W2;H0YJ75;Q13362;H0YJ35;Q59EF0;H0Y8C4 B4DSD7 177 189 PPP2R5D;PPP2R5C Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform;Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform yes no 2 0.032595 45.997 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2032100 2032100 0 2032100 2032100 0 0 0 0 3706 307 3797 13293;13294 20062;20063 20063 2 FLESTDSFNNELK ELLQIEERHQEKKRKFLESTDSFNNELKRL RKFLESTDSFNNELKRLCGLKVEVDMEKIA K F L L K R 0 0 2 1 0 0 2 0 0 0 2 1 0 2 0 2 1 0 0 0 0 0 13 0 1542.7202 B4DGM3;A0A024R1S7;Q969G3;K7EMQ8;J3QKS7;H7C048 B4DGM3 241 253 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 2 0.00072892 98.898 2 1 0.97685 1.2398 43.439 3 Median 0.73807 0.93614 39.736 2 0 Median 1.1243 1.6616 NaN 1 0 Median 18759000 9881700 8877200 12369000 6961000 5408100 6389800 2920700 3469100 3707 66 3798 13295;13296;13297 20064;20065;20066;20067;20068 20064 5 FLETVELQISLK AVREVLHGNQRKRRKFLETVELQISLKNYD RRKFLETVELQISLKNYDPQKDKRFSGTVR K F L L K N 0 0 0 0 0 1 2 0 0 1 3 1 0 1 0 1 1 0 0 1 0 0 12 0 1418.8021 P62906;Q1JQ76 P62906 28 39 RPL10A 60S ribosomal protein L10a;Ribosomal protein yes no 2 8.6081E-25 197.21 3 2 0.79186 1.0557 4.2756 5 Median 0.82389 1.0583 1.7321 3 0 Plateau 0.67512 1.0217 7.7181 2 0 Median 260900000 136050000 124840000 223800000 115780000 108020000 37093000 20270000 16823000 3708 1415 3799 13298;13299;13300;13301;13302 20069;20070;20071;20072;20073;20074;20075;20076;20077;20078 20069 10 FLEVQYLTGGLIEPDTPGR QALKKGWLYYEAGQRFLEVQYLTGGLIEPD QYLTGGLIEPDTPGRVPLDEALQRGTVDAR R F L G R V 0 1 0 1 0 1 2 3 0 1 3 0 0 1 2 0 2 0 1 1 0 0 19 0 2104.0841 Q15149;D3DWL0;Q96IE3 Q15149 4524 4542 PLEC;PLEC1 Plectin yes no 2 3.3546E-19 180.97 3 0.62954 0.893 20.562 2 Median 0.62954 0.893 20.562 2 0 Median NaN NaN NaN 0 0 Median 7150900 5209000 1942000 7150900 5209000 1942000 0 0 0 3709 1507 3800 13303;13304;13305 20079;20080;20081;20082;20083 20082 5 FLEVQYLTGGLIEPDTPGRVPLDEALQR QALKKGWLYYEAGQRFLEVQYLTGGLIEPD PDTPGRVPLDEALQRGTVDARTAQKLRDVG R F L Q R G 1 2 0 2 0 2 3 3 0 1 5 0 0 1 3 0 2 0 1 2 0 0 28 1 3125.6397 Q15149;D3DWL0;Q96IE3 Q15149 4524 4551 PLEC;PLEC1 Plectin yes no 3 8.3695E-55 126.31 4 0.59035 0.8002 8.0271 4 Median 0.59035 0.8002 8.0271 4 0 Median NaN NaN NaN 0 0 Median 179210000 110820000 68390000 179210000 110820000 68390000 0 0 0 3710 1507 3801 13306;13307;13308;13309 20084;20085;20086;20087;20088;20089;20090;20091;20092;20093 20090 10 FLFSLFGQK IQTMCPIEGEGNIARFLFSLFGQKHNAVNA EGNIARFLFSLFGQKHNAVNATLIDSWVDI R F L Q K H 0 0 0 0 0 1 0 1 0 0 2 1 0 3 0 1 0 0 0 0 0 0 9 0 1085.591 B2R7M3;A0A024QZY1;Q13155;A8MU58;F8W950 B2R7M3 216 224 JTV1;AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 yes no 2 1.5778E-05 148.04 5 0.40239 0.52917 37.616 5 Median 0.40239 0.52917 37.616 5 0 Median NaN NaN NaN 0 0 Median 23447000 16373000 7074100 23447000 16373000 7074100 0 0 0 3711 23 3802 13310;13311;13312;13313;13314 20094;20095;20096;20097;20098;20099 20095 6 FLGLLYELEENTDK CTYINVQERDPKAHRFLGLLYELEENTDKA RFLGLLYELEENTDKAVECYRRSVELNPTQ R F L D K A 0 0 1 1 0 0 3 1 0 0 4 1 0 1 0 0 1 0 1 0 0 0 14 0 1682.8403 D3DX73;P49792 D3DX73 65 78 hCG_1994636;RANBP2 E3 SUMO-protein ligase RanBP2 yes no 2 0.0001741 69.672 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1959600 1959600 0 1959600 1959600 0 0 0 0 3712 987 3803 13315 20100 20100 1 FLGPEDSHVVVASNSPCLK QKQFAGYSEEVLDVRFLGPEDSHVVVASNS EDSHVVVASNSPCLKVFELQTSACQILHGH R F L L K V 1 0 1 1 1 0 1 1 1 0 2 1 0 1 2 3 0 0 0 3 0 0 19 0 2055.0095 Q12788;J3KNP2;A0JLS5 Q12788 342 360 TBL3 Transducin beta-like protein 3 no no 3 8.1959E-05 61.477 4 2 0.84775 1.0809 14.961 5 Median 0.91038 1.144 3.4234 3 0 Median 0.57038 0.85872 0.54745 2 0 Median 150290000 73745000 76542000 121500000 54291000 67207000 28789000 19455000 9334700 3713 1456 3804 13316;13317;13318;13319;13320;13321 20101;20102;20103;20104;20105;20106;20107;20108;20109;20110;20111;20112 20110 12 FLGQILTAFPALR KKMCSLAVVNLGTHKFLGQILTAFPALRFV HKFLGQILTAFPALRFVEEQGPNSSATFMV K F L L R F 2 1 0 0 0 1 0 1 0 1 3 0 0 2 1 0 1 0 0 0 0 0 13 0 1445.8395 Q9HBB9;Q8WUM5 Q9HBB9 566 578 GEMIN4 yes no 2 0.011108 92.538 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 558920 558920 0 558920 558920 0 0 0 0 3714 1667 3805 13322 20113 20113 1 FLGSDEEDKDSLQELSTEQK GVHSVGLTWIHKLHKFLGSDEEDKDSLQEL EEDKDSLQELSTEQKCFVEHILCTKPLPCR K F L Q K C 0 0 0 3 0 2 4 1 0 0 3 2 0 1 0 3 1 0 0 0 0 0 20 1 2297.0547 B4DP20;J3KMX1;Q99567;B7Z5I6 B4DP20 296 315 NUP88 Nuclear pore complex protein Nup88 yes no 3 0.020289 61.957 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4812600 4812600 0 4812600 4812600 0 0 0 0 3715 844 3806 13323;13324 20114;20115 20114 2 FLHSEALLAVAQNR LMCEINVMEAVRDIRFLHSEALLAVAQNRW RFLHSEALLAVAQNRWLHIYDNQGIELHCI R F L N R W 3 1 1 0 0 1 1 0 1 0 3 0 0 1 0 1 0 0 0 1 0 0 14 0 1567.8471 B0UZZ8;B4DNI0;O15213;B4DP15;A8K9A1;A0A140T9L0;A0A0G2JJL1;H0Y6G3 B0UZZ8 244 257 C6orf11;WDR46 WD repeat-containing protein 46 yes no 3 3.4373E-06 74.537 2 0.99418 1.3469 21.357 2 Median 0.99418 1.3469 21.357 2 0 Median NaN NaN NaN 0 0 Median 35339000 18252000 17087000 35339000 18252000 17087000 0 0 0 3716 668 3807 13325;13326 20116;20117;20118;20119 20119 4 FLICTDVAAR ERKQNLERFKKGDVRFLICTDVAARGIDIH KGDVRFLICTDVAARGIDIHGVPYVINVTL R F L A R G 2 1 0 1 1 0 0 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 10 0 1164.5961 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 487 496 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.0037811 93.143 3 0.68745 0.91521 2.1498 3 Median 0.68745 0.91521 2.1498 3 0 Median NaN NaN NaN 0 0 Median 63501000 34616000 28885000 63501000 34616000 28885000 0 0 0 3717 378 3808 13327;13328;13329 20120;20121;20122;20123;20124 20123 5 FLIDGFPR REMDQTMAANAQKNKFLIDGFPRNQDNLQG ANAQKNKFLIDGFPRNQDNLQGWNKTMDGK K F L P R N 0 1 0 1 0 0 0 1 0 1 1 0 0 2 1 0 0 0 0 0 0 0 8 0 963.5178 Q5T0D2;B4DDL4;B2R6S5;P30085;B4DFW6 Q5T0D2 121 128 CMPK1;CMPK UMP-CMP kinase yes no 2 0.024269 55.676 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5757000 1904400 3852600 1904400 1904400 0 3852600 0 3852600 3718 700 3809 13330;13331 20125;20126 20125 2 FLILPDMLK VAQLEQVYIRGSKIRFLILPDMLKNAPMLK RGSKIRFLILPDMLKNAPMLKSMKNKNQGS R F L L K N 0 0 0 1 0 0 0 0 0 1 3 1 1 1 1 0 0 0 0 0 0 0 9 0 1088.6304 P62318 P62318 70 78 SNRPD3 Small nuclear ribonucleoprotein Sm D3 yes yes 2 0.0072553 95.909 3 1 0.73251 0.97357 4.2105 4 Median 0.76192 1.0021 4.88 3 0 Plateau 0.62114 0.94735 NaN 1 0 Median 35130000 21886000 13244000 9846100 5463900 4382200 25284000 16422000 8861500 3719 1409 3810;3811 13332;13333;13334;13335 20127;20128;20129;20130;20131;20132 20127 617 6 FLILQGEVEQIAMMK GNLLRSHGIDLDHNRFLILQGEVEQIAMMK FLILQGEVEQIAMMKPKGQTEHDEGMLEYL R F L M K P 1 0 0 0 0 2 2 1 0 2 2 1 2 1 0 0 0 0 0 1 0 0 15 0 1748.9205 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J578;C9JVD8 Q9NTJ3 225 239 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.6388E-05 69.721 1 0.43165 0.68037 NaN 1 Median NaN NaN NaN 0 0 Median 0.43165 0.68037 NaN 1 0 Median 39945000 26086000 13859000 0 0 0 39945000 26086000 13859000 3720 1760 3812 13336 20133 20133 804;805 1 FLILQGEVEQIAMMKPK GNLLRSHGIDLDHNRFLILQGEVEQIAMMK ILQGEVEQIAMMKPKGQTEHDEGMLEYLED R F L P K G 1 0 0 0 0 2 2 1 0 2 2 2 2 1 1 0 0 0 0 1 0 0 17 1 1974.0682 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J578;C9JVD8 Q9NTJ3 225 241 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 1.3363E-06 68.257 2 0.60326 0.97088 8.214 2 Median NaN NaN NaN 0 0 Median 0.60326 0.97088 8.214 2 0 Median 95514000 58249000 37264000 0 0 0 95514000 58249000 37264000 3721 1760 3813 13337;13338 20134;20135;20136;20137 20136 804;805 4 FLLEGQVFR VDFPEGIDRYKHFARFLLEGQVFRKLASYR YKHFARFLLEGQVFRKLASYRSCLLSSPGT R F L F R K 0 1 0 0 0 1 1 1 0 0 2 0 0 2 0 0 0 0 0 1 0 0 9 0 1107.6077 Q8IY37;F5H3Y4 Q8IY37 1067 1075 DHX37 Probable ATP-dependent RNA helicase DHX37 yes no 2 0.027223 51.854 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1919200 1919200 0 0 0 0 1919200 1919200 0 3722 1627 3814 13339;13340 20138;20139 20138 2 FLLHEPIVNK GSTAARTFYLIKDIRFLLHEPIVNKFREYK IKDIRFLLHEPIVNKFREYKVFVRKLRKAY R F L N K F 0 0 1 0 0 0 1 0 1 1 2 1 0 1 1 0 0 0 0 1 0 0 10 0 1208.6917 B5MCF9;B2RDF2;O00541 B5MCF9 72 81 PES1 Pescadillo homolog yes no 2;3 7.1812E-09 128.12 5 0.68952 0.87488 NaN 1 Median 0.68952 0.87488 NaN 1 0 Median NaN NaN NaN 0 0 Median 16047000 13080000 2966900 16047000 13080000 2966900 0 0 0 3723 735 3815 13341;13342;13343;13344;13345 20140;20141;20142;20143;20144 20143 5 FLLHQETLPEQLLAEK DMLQEKIEEMAEQERFLLHQETLPEQLLAE LLHQETLPEQLLAEKQLNLSAMPVLTAPQL R F L E K Q 1 0 0 0 0 2 3 0 1 0 5 1 0 1 1 0 1 0 0 0 0 0 16 0 1908.0357 Q8WUM0;B4E206;A0A024R3R6;B4E3T7 Q8WUM0 1001 1016 NUP133 Nuclear pore complex protein Nup133 yes no 3 0.047025 26.148 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3246500 3246500 0 3246500 3246500 0 0 0 0 3724 1666 3816 13346 20145 20145 1 FLLLFTFLKK DGLEQGYVVCPSEKRFLLLFTFLKKNRKKK PSEKRFLLLFTFLKKNRKKKLMVFFSSCMS R F L K K N 0 0 0 0 0 0 0 0 0 0 4 2 0 3 0 0 1 0 0 0 0 0 10 1 1268.7897 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254;Q59FR7 Q4ZG72 289 298 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 0.018371 49.418 1 0.9438 1.0853 NaN 1 Median 0.9438 1.0853 NaN 1 0 Median NaN NaN NaN 0 0 Median 1416100 686450 729620 1416100 686450 729620 0 0 0 3725 242 3817 13347 20146 20146 1 FLLLQGLVEK IYLPVIGQSPVVDKKFLLLQGLVEKEIDYQ VVDKKFLLLQGLVEKEIDYQRELLETLGMM K F L E K E 0 0 0 0 0 1 1 1 0 0 4 1 0 1 0 0 0 0 0 1 0 0 10 0 1158.7012 Q8TED0;H0Y8P4 Q8TED0 463 472 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 0.00039406 123.21 4 2 0.93169 1.1721 7.4985 6 Median 0.95705 1.1964 2.3151 4 0 Median 0.68755 1.0372 4.2798 2 0 Median 132680000 71809000 60874000 96946000 50507000 46439000 35736000 21302000 14434000 3726 1660 3818 13348;13349;13350;13351;13352;13353 20147;20148;20149;20150;20151;20152;20153;20154;20155;20156;20157 20152 11 FLLQDTVELR MCSLMLSKELPARIRFLLQDTVELREHHWV PARIRFLLQDTVELREHHWVPRKAFLDNGP R F L L R E 0 1 0 1 0 1 1 0 0 0 3 0 0 1 0 0 1 0 0 1 0 0 10 0 1232.6765 D3DQV9;Q59G42;B4DZF2;P78344;H0Y3P2;H0YCH5;Q2TU89 D3DQV9 296 305 EIF4G2;AAG1 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 5.5024E-05 98.033 3 0.33317 0.45376 12.884 3 Plateau 0.33317 0.45376 12.884 3 0 Plateau NaN NaN NaN 0 0 Median 23452000 17269000 6182800 23452000 17269000 6182800 0 0 0 3727 877 3819 13354;13355;13356 20158;20159;20160;20161;20162 20161 5 FLNAEGSGGIVGHDEISR KRQKTATKGNQRVQKFLNAEGSGGIVGHDE AEGSGGIVGHDEISRCSLSEPLESDEADLA K F L S R C 1 1 1 1 0 0 2 4 1 2 1 0 0 1 0 2 0 0 0 1 0 0 18 0 1856.9017 Q03188;H0Y8J2 Q03188 594 611 CENPC Centromere protein C yes no 3 0.00012966 68.845 2 1 0.7487 1.0107 14.475 3 Median 0.75187 1.0127 0.27557 2 0 Median 0.51722 0.78813 NaN 1 0 Median 50879000 28605000 22274000 33252000 16580000 16672000 17627000 12025000 5601800 3728 1439 3820 13357;13358;13359 20163;20164;20165;20166;20167;20168 20168 6 FLNAENAQK DFADECPKPELLAIRFLNAENAQKFKTKFE ELLAIRFLNAENAQKFKTKFEECRKEIEER R F L Q K F 2 0 2 0 0 1 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 9 0 1033.5193 A0A140VK94;F6WQW2;P43487;C9JXG8;D3DX26;B3KUP2;C9JGV6 A0A140VK94 142 150 RANBP1 Ran-specific GTPase-activating protein yes no 2 7.7043E-08 105.25 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3729 511 3821 13360 20169 20169 1 FLNDTTKPVGLLLSER CEKNCEKSMVEQLDKFLNDTTKPVGLLLSE LNDTTKPVGLLLSERFINVPPQIALPMYQQ K F L E R F 0 1 1 1 0 0 1 1 0 0 4 1 0 1 1 1 2 0 0 1 0 0 16 1 1801.9938 Q9P287;B4DUS0;B4E318 Q9P287 168 183 BCCIP BRCA2 and CDKN1A-interacting protein yes no 3 0.02146 24.481 1 1.9993 3.0412 NaN 1 Median NaN NaN NaN 0 0 Median 1.9993 3.0412 NaN 1 0 Median 4873600 1783400 3090200 0 0 0 4873600 1783400 3090200 3730 1779 3822 13361 20170 20170 1 FLNRHDLDLICR DRGVSFTFGADVVSKFLNRHDLDLICRAHQ VSKFLNRHDLDLICRAHQVVEDGYEFFAKR K F L C R A 0 2 1 2 1 0 0 0 1 1 3 0 0 1 0 0 0 0 0 0 0 0 12 1 1570.8038 V9HW04;P62140;B4DJ75;B7ZB67 V9HW04 234 245 HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes no 3 0.0010424 93.623 3 1.1814 1.5856 17.421 3 Plateau 1.1814 1.5856 17.421 3 0 Plateau NaN NaN NaN 0 0 Median 48049000 24442000 23607000 48049000 24442000 23607000 0 0 0 3731 1397 3823 13362;13363;13364 20171;20172;20173;20174 20171 3 FLPAVSDENSK RKARKQKGAETELVRFLPAVSDENSKRLSS ELVRFLPAVSDENSKRLSSRARKRAAKRRL R F L S K R 1 0 1 1 0 0 1 0 0 0 1 1 0 1 1 2 0 0 0 1 0 0 11 0 1205.5928 P46087;F5H5X6;F5GWB7;F5H709;F5H359;F5H8G6 P46087 31 41 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2 0.00042758 96.665 5 0.69566 0.88205 3.0827 2 Median 0.69566 0.88205 3.0827 2 0 Median NaN NaN NaN 0 0 Median 190940000 136390000 54544000 190940000 136390000 54544000 0 0 0 3732 1343 3824 13365;13366;13367;13368;13369 20175;20176;20177;20178;20179;20180;20181 20181 7 FLPNAPK VKSQHSGNAQVTQTKFLPNAPKALIVEPSR NAQVTQTKFLPNAPKALIVEPSRELAEQTL K F L P K A 1 0 1 0 0 0 0 0 0 0 1 1 0 1 2 0 0 0 0 0 0 0 7 0 785.44357 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 201 207 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.036563 56.51 1 0.83023 1.0132 NaN 1 Median 0.83023 1.0132 NaN 1 0 Median NaN NaN NaN 0 0 Median 20218000 11838000 8379400 20218000 11838000 8379400 0 0 0 3733 378 3825 13370 20182 20182 1 FLPREEGPYEVEVTYDGVPVPGSPFPLEAVAPTKPSK CKVEPGLGADNSVVRFLPREEGPYEVEVTY SPFPLEAVAPTKPSKVKAFGPGLQGGSAGS R F L S K V 2 1 0 1 0 0 5 3 0 0 2 2 0 2 8 2 2 0 2 5 0 0 37 2 3998.0353 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 1033 1069 FLNA Filamin-A yes no 4 0.00050665 40.513 3 0.80038 1.0476 7.9676 3 Plateau 0.80038 1.0476 7.9676 3 0 Plateau NaN NaN NaN 0 0 Median 20123000 10571000 9551300 20123000 10571000 9551300 0 0 0 3734 1287 3826 13371;13372;13373 20183;20184;20185;20186;20187 20184 5 FLPRPPGEK QKFYIDPYKLLPLQRFLPRPPGEKGPPRGG LLPLQRFLPRPPGEKGPPRGGGRGGRGGGR R F L E K G 0 1 0 0 0 0 1 1 0 0 1 1 0 1 3 0 0 0 0 0 0 0 9 1 1039.5815 A0A024RDJ3;Q9NY12 A0A024RDJ3 157 165 NOLA1;GAR1 H/ACA ribonucleoprotein complex subunit 1 yes no 3 0.019729 57.859 2 0.62648 0.82382 0.19744 2 Median 0.62648 0.82382 0.19744 2 0 Median NaN NaN NaN 0 0 Median 26877000 14482000 12396000 26877000 14482000 12396000 0 0 0 3735 317 3827 13374;13375 20188;20189;20190;20191 20190 4 FLQEEAEK ENRALILRDKDNTQRFLQEEAEKMKQVAEE DKDNTQRFLQEEAEKMKQVAEEAARLSVAA R F L E K M 1 0 0 0 0 1 3 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 8 0 992.48148 Q15149 Q15149 2402 2409 PLEC Plectin yes yes 2 0.00414 98.299 4 1.1971 1.3616 9.7433 3 Plateau 1.1971 1.3616 9.7433 3 0 Plateau NaN NaN NaN 0 0 Median 45827000 21595000 24232000 45827000 21595000 24232000 0 0 0 3736 1507 3828 13376;13377;13378;13379 20192;20193;20194;20195 20194 4 FLQFFK DSDVLDRPLNIMIPKFLQFFKHSSPKIRSH RPLNIMIPKFLQFFKHSSPKIRSHAVACVN K F L F K H 0 0 0 0 0 1 0 0 0 0 1 1 0 3 0 0 0 0 0 0 0 0 6 0 828.45341 A0A024RAM0;Q92973;B4DRY5;A0A024R7F7;Q4LE60;B3KPC8;A0A075B780;Q05D48;O14787 A0A024RAM0 187 192 TNPO1;TNPO2;TNPO2 variant protein Transportin-1;Transportin-2 yes no 2 0.040811 77.906 1 0.59507 0.77984 NaN 1 Median 0.59507 0.77984 NaN 1 0 Median NaN NaN NaN 0 0 Median 5504200 3797500 1706700 5504200 3797500 1706700 0 0 0 3737 246 3829 13380 20196 20196 1 FLQGDSFLNEDLNQLIK FNPPVESSNPKIKGKFLQGDSFLNEDLNQL QGDSFLNEDLNQLIKRYSSEVATESPLDFT K F L I K R 0 0 2 2 0 2 1 1 0 1 4 1 0 2 0 1 0 0 0 0 0 0 17 0 1993.0157 A8K905;Q8WTT2 A8K905 761 777 NOC3L Nucleolar complex protein 3 homolog yes no 2 1.6838E-60 226.23 4 0.87411 1.0881 8.1011 4 Median 0.87411 1.0881 8.1011 4 0 Median NaN NaN NaN 0 0 Median 89221000 49491000 39730000 89221000 49491000 39730000 0 0 0 3738 643 3830 13381;13382;13383;13384 20197;20198;20199;20200;20201;20202;20203;20204 20200 8 FLQNTEGIEPTVK FHEWPQQALESVSLRFLQNTEGIEPTVKQS LRFLQNTEGIEPTVKQSISKFMAFVHTSVN R F L V K Q 0 0 1 0 0 1 2 1 0 1 1 1 0 1 1 0 2 0 0 1 0 0 13 0 1474.7668 E7EP17;Q9NYC9;A8KAY3;B0I1R1 E7EP17 2996 3008 DNAH9 Dynein heavy chain 9, axonemal yes no 2 0.026222 33.378 2 0.30613 0.46293 5.7241 2 Median NaN NaN NaN 0 0 Median 0.30613 0.46293 5.7241 2 0 Median 40664000 30070000 10595000 0 0 0 40664000 30070000 10595000 3739 1009 3831 13385;13386 20205;20206 20205 2 FLQVQPVSR LLQETLYMCVGIMDRFLQVQPVSRKKLQLV VGIMDRFLQVQPVSRKKLQLVGITALLLAS R F L S R K 0 1 0 0 0 2 0 0 0 0 1 0 0 1 1 1 0 0 0 2 0 0 9 0 1072.6029 H1UBN3;Q5U0M0;Q53HG9;O95067;H0YMP3 H1UBN3 197 205 CCNB2V;CCNB2 G2/mitotic-specific cyclin-B2 yes no 2 0.0014916 83.265 1 1 1.1093 1.4543 NaN 1 Median NaN NaN NaN 0 0 Median 1.1093 1.4543 NaN 1 0 Median 6573300 5228500 1344800 3401900 3401900 0 3171300 1826600 1344800 3740 1104 3832 13387;13388 20207;20208 20207 2 FLSESVLAVAGDEEVIR ISGTITNEKRISSVKFLSESVLAVAGDEEV SESVLAVAGDEEVIRFFDCDSLVCLCEFKA K F L I R F 2 1 0 1 0 0 3 1 0 1 2 0 0 1 0 2 0 0 0 3 0 0 17 0 1832.952 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 212 228 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 2 2.1555E-34 190.1 4 1 1.053 1.428 12.38 5 Median 1.0596 1.4361 1.3267 4 0 Median 0.68438 1.0922 NaN 1 0 Median 168850000 87006000 81840000 136180000 67809000 68372000 32664000 19196000 13468000 3741 478 3833 13389;13390;13391;13392;13393 20209;20210;20211;20212;20213;20214;20215;20216;20217;20218;20219 20211 11 FLSGIINFIHFR ETADILCPKAKRTSRFLSGIINFIHFREAC TSRFLSGIINFIHFREACRETYMEFLWQYK R F L F R E 0 1 1 0 0 0 0 1 1 3 1 0 0 3 0 1 0 0 0 0 0 0 12 0 1462.8085 Q9BZD4;A0A024R8Y0;E9PQC4;B1AQT4;E9PP32;B1AQT3 Q9BZD4 120 131 NUF2;CDCA1 Kinetochore protein Nuf2 yes no 3 0.015972 29.299 1 0.71684 0.97044 NaN 1 Median 0.71684 0.97044 NaN 1 0 Median NaN NaN NaN 0 0 Median 3444500 1578400 1866200 3444500 1578400 1866200 0 0 0 3742 1727 3834 13394 20220 20220 1 FLSLANK NSLYGPGTNRTTVNKFLSLANKRLPVKRAA TNRTTVNKFLSLANKRLPVKRAAVQFLNNA K F L N K R 1 0 1 0 0 0 0 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 7 0 791.45414 A0A024QZW2;Q9UMY1 A0A024QZW2 211 217 NOL7 Nucleolar protein 7 yes no 2 0.0074056 108.24 5 1.0164 1.2842 5.5282 3 Median 1.0164 1.2842 5.5282 3 0 Median NaN NaN NaN 0 0 Median 91696000 57159000 34537000 91696000 57159000 34537000 0 0 0 3743 21 3835 13395;13396;13397;13398;13399 20221;20222;20223;20224;20225;20226;20227;20228 20227 8 FLSLQSEHK SDKEVQMHFAELQEKFLSLQSEHKILHDQH AELQEKFLSLQSEHKILHDQHCQMSSKMSE K F L H K I 0 0 0 0 0 1 1 0 1 0 2 1 0 1 0 2 0 0 0 0 0 0 9 0 1087.5662 P49454 P49454 1411 1419 CENPF Centromere protein F yes yes 3 0.024104 30.797 1 0.59374 0.75298 NaN 1 Median 0.59374 0.75298 NaN 1 0 Median NaN NaN NaN 0 0 Median 6615200 4238000 2377300 6615200 4238000 2377300 0 0 0 3744 1351 3836 13400 20229 20229 1 FLSNGHVTIPGQQDK HLKTDLLLEPYNKYRFLSNGHVTIPGQQDK FLSNGHVTIPGQQDKDMFQETMEAMRIMGI R F L D K D 0 0 1 1 0 2 0 2 1 1 1 1 0 1 1 1 1 0 0 1 0 0 15 0 1639.8318 A0A024R1N1;P35579;Q86XU5;B4E3S1 A0A024R1N1 302 316 MYH9 Myosin-9 yes no 2;3 1.4268E-27 171.62 5 1.0503 1.3059 7.9877 4 Median 1.0503 1.3059 7.9877 4 0 Median NaN NaN NaN 0 0 Median 132860000 63483000 69373000 132860000 63483000 69373000 0 0 0 3745 61 3837 13401;13402;13403;13404;13405 20230;20231;20232;20233;20234 20231 5 FLSQLEITFR TVANSPQTLLAGMNKFLSQLEITFRRDPNN AGMNKFLSQLEITFRRDPNNYRPRINKLNS K F L F R R 0 1 0 0 0 1 1 0 0 1 2 0 0 2 0 1 1 0 0 0 0 0 10 0 1252.6816 P61221 P61221 558 567 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 2 0.0048115 108.57 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3746 1392 3838 13406 20235 20235 1 FLTFAER MKTKPVSHKTENTYRFLTFAERLGNVNIDI HKTENTYRFLTFAERLGNVNIDIIHRIDRT R F L E R L 1 1 0 0 0 0 1 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 7 0 882.45995 O75691 O75691 16 22 UTP20 Small subunit processome component 20 homolog yes yes 2 0.024935 69.383 1 1.052 1.4458 NaN 1 Median 1.052 1.4458 NaN 1 0 Median NaN NaN NaN 0 0 Median 10026000 5224400 4801500 10026000 5224400 4801500 0 0 0 3747 1207 3839 13407 20236 20236 1 FLTTCYQLLGYLQK VTKLGCSCSSSLALKFLTTCYQLLGYLQKG KFLTTCYQLLGYLQKGKSARSVFKIMYGSD K F L Q K G 0 0 0 0 1 2 0 1 0 0 4 1 0 1 0 0 2 0 2 0 0 0 14 0 1746.9015 A8K4P8;Q14146;Q6PCC8 A8K4P8 941 954 URB2 Unhealthy ribosome biogenesis protein 2 homolog yes no 2 0.0089579 92.239 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2997800 2997800 0 2997800 2997800 0 0 0 0 3748 606 3840 13408;13409 20237;20238 20237 2 FLTVMMK KRQVLIRPCSKVIVRFLTVMMKHGYIGEFE PCSKVIVRFLTVMMKHGYIGEFEIIDDHRA R F L M K H 0 0 0 0 0 0 0 0 0 0 1 1 2 1 0 0 1 0 0 1 0 0 7 0 868.45507 B2R4W8;P62244;I3L3P7;A8K7H3;I3L246;H3BN98;H3BV27;H3BT37;I3L303 B2R4W8 37 43 hCG_1994130;RPS15A 40S ribosomal protein S15a yes no 2 0.023943 55.441 2 0.25748 0.38904 9.7896 2 Median NaN NaN NaN 0 0 Median 0.25748 0.38904 9.7896 2 0 Median 32892000 26943000 5948700 0 0 0 32892000 26943000 5948700 3749 688 3841 13410;13411 20239;20240 20240 239;240 2 FLVHESFLYR PLRPLEFLRTSLGGRFLVHESFLYRKEKAA SLGGRFLVHESFLYRKEKAAGEKVYWMCRD R F L Y R K 0 1 0 0 0 0 1 0 1 0 2 0 0 2 0 1 0 0 1 1 0 0 10 0 1309.6819 Q4VC44;I3L188;J3KNW1;B3KRZ0;B3KPY2;B3KP60 Q4VC44 609 618 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 3 0.020398 32.523 1 0.81863 1.1085 NaN 1 Median 0.81863 1.1085 NaN 1 0 Median NaN NaN NaN 0 0 Median 8705200 5083400 3621800 8705200 5083400 3621800 0 0 0 3750 1536 3842 13412 20241;20242 20241 2 FLVHNVK SNKKTKHMLPSGFRKFLVHNVKELEVLLMC MLPSGFRKFLVHNVKELEVLLMCNKSYCAE K F L V K E 0 0 1 0 0 0 0 0 1 0 1 1 0 1 0 0 0 0 0 2 0 0 7 0 855.49667 D3YTB1;A0A024R2G7;F8W727;P62910;A0A090N8E7 D3YTB1 77 83 RPL32;LOC402318 60S ribosomal protein L32 yes no 2 0.0098707 124.32 4 2 0.78997 1.0441 18.221 5 Median 0.86226 1.15 5.8751 3 0 Median 0.51115 0.81014 4.4725 2 0 Median 2369700000 1387300000 982390000 2193500000 1267800000 925710000 176220000 119540000 56675000 3751 85 3843 13413;13414;13415;13416;13417;13418 20243;20244;20245;20246;20247;20248;20249 20246 7 FLVQNIHTLAELK LYMWLSNSPHGPSAKFLVQNIHTLAELKMT AKFLVQNIHTLAELKMTGNCLKGSRPLLSF K F L L K M 1 0 1 0 0 1 1 0 1 1 3 1 0 1 0 0 1 0 0 1 0 0 13 0 1524.8664 Q8TDN6;A0JLQ5;B4E0B8 Q8TDN6 141 153 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 2;3 8.3481E-23 176.62 9 4 0.90116 1.23 18.374 12 Median 0.99761 1.287 21.032 8 0 Median 0.6899 1.0979 9.4682 4 0 Median 1323500000 697820000 625710000 1119300000 576620000 542670000 204240000 121200000 83041000 3752 1659 3844 13419;13420;13421;13422;13423;13424;13425;13426;13427;13428;13429;13430;13431 20250;20251;20252;20253;20254;20255;20256;20257;20258;20259;20260;20261;20262;20263;20264;20265;20266;20267;20268;20269;20270;20271;20272;20273;20274;20275;20276 20267 27 FLYDDNQR LARLLFPPKDDHTLKFLYDDNQRVEPEWYI KDDHTLKFLYDDNQRVEPEWYIPIIPMVLI K F L Q R V 0 1 1 2 0 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 8 0 1069.4829 P11388;Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80;Q6W6M6 P11388 828 835 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2 0.00012747 130.04 4 4 0.80665 1.1582 8.8409 8 Median 0.80665 1.1113 5.1217 4 0 Median 0.80037 1.2528 5.8538 4 0 Median 621190000 336240000 284950000 478800000 256160000 222640000 142380000 80073000 62310000 3753 1256;1437 3845 13432;13433;13434;13435;13436;13437;13438;13439 20277;20278;20279;20280;20281;20282;20283;20284;20285;20286;20287;20288;20289;20290;20291;20292;20293;20294;20295 20277 19 FNACFESVATNIDEIYK AKQAFEQIKKERFDRFNACFESVATNIDEI ACFESVATNIDEIYKALSRNSSAQAFLGPE R F N Y K A 2 0 2 1 1 0 2 0 0 2 0 1 0 2 0 1 1 0 1 1 0 0 17 0 2019.9248 Q14683;G8JLG1;V9GY57 Q14683 1070 1086 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 1.579E-10 132.97 3 0.59643 0.76529 2.5254 2 Median 0.59643 0.76529 2.5254 2 0 Median NaN NaN NaN 0 0 Median 14392000 11169000 3222800 14392000 11169000 3222800 0 0 0 3754 1492 3846 13440;13441;13442 20296;20297;20298;20299;20300;20301 20296 6 FNADEFEDMVAEK GRQKIHISKKWGFTKFNADEFEDMVAEKRL TKFNADEFEDMVAEKRLIPDGCGVKYIPNR K F N E K R 2 0 1 2 0 0 3 0 0 0 0 1 1 2 0 0 0 0 0 1 0 0 13 0 1543.6501 F8W7C6;A0A087WV22;X5D7P1;P27635;X1WI28;X5D2T3 P27635 176 188 RPL10 60S ribosomal protein L10 no no 2 8.9162E-17 171.67 13 4 0.8393 1.0448 10.778 15 Median 0.85011 1.0566 7.1616 11 0 Median 0.58886 0.94115 5.4497 4 0 Linear 751840000 445610000 306230000 229280000 113460000 115820000 522560000 332150000 190420000 3755 1301;1071 3847;3848 13443;13444;13445;13446;13447;13448;13449;13450;13451;13452;13453;13454;13455;13456;13457;13458;13459 20302;20303;20304;20305;20306;20307;20308;20309;20310;20311;20312;20313;20314;20315;20316;20317;20318;20319;20320;20321;20322;20323;20324;20325;20326;20327;20328;20329 20302 383 27 FNADEFEDMVAEKR GRQKIHISKKWGFTKFNADEFEDMVAEKRL KFNADEFEDMVAEKRLIPDGCGVKYIPNRG K F N K R L 2 1 1 2 0 0 3 0 0 0 0 1 1 2 0 0 0 0 0 1 0 0 14 1 1699.7512 F8W7C6;A0A087WV22;X5D7P1;P27635;X1WI28;X5D2T3 P27635 176 189 RPL10 60S ribosomal protein L10 no no 3 0.00013621 65.565 2 1 0.53901 0.75548 1.2802 2 Median 0.60152 0.76235 NaN 1 0 Median 0.483 0.74867 NaN 1 0 Median 17336000 11834000 5502600 6738100 4768700 1969300 10598000 7064900 3533300 3756 1301;1071 3849;3850 13460;13461;13462 20330;20331;20332 20332 383 3 FNALITTYEILLK IREYEWIHSQTKRLKFNALITTYEILLKDK LKFNALITTYEILLKDKTVLGSINWAFLGV K F N L K D 1 0 1 0 0 0 1 0 0 2 3 1 0 1 0 0 2 0 1 0 0 0 13 0 1537.8756 A0A024RC75;O14647;A0A1B0GTU9;A8K9Y5 A0A024RC75 589 601 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 2 0.00135 95.618 3 0.80658 1.026 24.191 3 Plateau 0.80658 1.026 24.191 3 0 Plateau NaN NaN NaN 0 0 Median 4852500 2551300 2301200 4852500 2551300 2301200 0 0 0 3757 289 3851 13463;13464;13465 20333;20334;20335;20336 20333 4 FNAPGAQQFCFLLSTR DGGITGNMRQEAIDRFNAPGAQQFCFLLST NAPGAQQFCFLLSTRAGGLGINLATADTVI R F N T R A 2 1 1 0 1 2 0 1 0 0 2 0 0 3 1 1 1 0 0 0 0 0 16 0 1855.9039 B3KY63;F5GWX5;A0A0C4DGG9;Q14839;Q8TDI0;K7EMY3;Q659F1;Q659D0;B3KRD4;Q6ZSZ4;F2Z2R5;F6T542;Q12873;B4DLC6 B3KY63 1086 1101 CHD4;CHD5;DKFZp434K213;DKFZp434P202;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 no no 2 1.5726E-18 129.37 2 2 0.88251 1.368 28.993 3 Median 0.63611 0.87604 NaN 1 0 Median 0.91725 1.437 6.96 2 0 Median 113700000 57113000 56585000 57312000 26005000 31307000 56387000 31109000 25278000 3758 428;1458 3852 13466;13467;13468;13469 20337;20338;20339;20340;20341;20342 20338 6 FNASQLITQR LPSIVNEVLKSVVAKFNASQLITQRAQVSL SVVAKFNASQLITQRAQVSLLIRRELTERA K F N Q R A 1 1 1 0 0 2 0 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 10 0 1176.6251 J3KPX7;Q99623;F5GY37;B4DW05;F5GWA7;F5H3X6 J3KPX7 148 157 PHB2 Prohibitin-2 yes no 2 7.8782E-08 128 4 1 0.56251 0.78194 51.439 5 Median 0.55971 0.76991 1.9143 4 0 Median 1.5493 2.4324 NaN 1 0 Median 441990000 269530000 172460000 404450000 254720000 149730000 37537000 14812000 22726000 3759 1133 3853 13470;13471;13472;13473;13474 20343;20344;20345;20346;20347;20348;20349 20345 6 FNDEHIPESPYLVPVIAPSDDAR SYIAQEPGNYEVSIKFNDEHIPESPYLVPV SPYLVPVIAPSDDARRLTVMSLQESGLKVN K F N A R R 2 1 1 3 0 0 2 0 1 2 1 0 0 1 4 2 0 0 1 2 0 0 23 0 2580.2496 O75369;A0A024R321;Q68CT4;E7EN95 O75369 2266 2288 FLNB;DKFZp686A1668 Filamin-B yes no 3 0.0031395 27.739 2 0.66645 0.88912 38.982 2 Median 0.66645 0.88912 38.982 2 0 Median NaN NaN NaN 0 0 Median 27315000 14737000 12578000 27315000 14737000 12578000 0 0 0 3760 1199 3854 13475;13476 20350;20351;20352;20353 20350 4 FNDSEGDDTEETEDYR EALDYFSDKESGKQKFNDSEGDDTEETEDY NDSEGDDTEETEDYRQFRKSVLADQGKSFA K F N Y R Q 0 1 1 4 0 0 4 1 0 0 0 0 0 1 0 1 2 0 1 0 0 0 16 0 1920.7133 Q6DCA8;E9PK09;E9PQN2;E9PKI6;E9PK91;Q9NYF8 Q6DCA8 394 409 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2 6.3095E-53 196.5 6 1 0.53535 0.77203 47.77 2 Median 0.39751 0.55072 NaN 1 0 Median 0.72099 1.0823 NaN 1 0 Median 19537000 13580000 5957300 12355000 9190700 3164300 7182500 4389400 2793100 3761 1036 3855 13477;13478;13479;13480;13481;13482;13483 20354;20355;20356;20357;20358;20359;20360;20361 20355 8 FNECGHVLYADIK RNLPFDFTWKMLKDKFNECGHVLYADIKME DKFNECGHVLYADIKMENGKSKGCGVVKFE K F N I K M 1 0 1 1 1 0 1 1 1 1 1 1 0 1 0 0 0 0 1 1 0 0 13 0 1564.7344 P52272;A0A087X0X3;Q59ES8;Q7KYM9;Q6P2D7 P52272 673 685 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M yes no 3 0.00027175 83.243 4 2 0.38887 0.49301 107.59 6 Median 0.37587 0.46693 9.269 4 0 Median 2.4494 3.6567 16.882 2 0 Median 174460000 121420000 53031000 156970000 116330000 40644000 17481000 5094700 12387000 3762 1363 3856 13484;13485;13486;13487;13488;13489 20362;20363;20364;20365;20366;20367;20368;20369 20365 8 FNEEHIPDSPFVVPVASPSGDAR AYVVQEPGDYEVSVKFNEEHIPDSPFVVPV SPFVVPVASPSGDARRLTVSSLQESGLKVN K F N A R R 2 1 1 2 0 0 2 1 1 1 0 0 0 2 4 3 0 0 0 3 0 0 23 0 2466.1816 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5;Q2VP91;H0Y5C6 P21333 2311 2333 FLNA;FLJ00119 Filamin-A yes no 3 9.5767E-07 93.551 4 0.87943 1.2077 6.229 4 Median 0.87943 1.2077 6.229 4 0 Median NaN NaN NaN 0 0 Median 233110000 123260000 109850000 233110000 123260000 109850000 0 0 0 3763 1287 3857 13490;13491;13492;13493 20370;20371;20372;20373;20374;20375;20376;20377;20378 20371 9 FNEPGSQYFIFLLSTR DGTTKSEDRAALLKKFNEPGSQYFIFLLST NEPGSQYFIFLLSTRAGGLGLNLQAADTVV K F N T R A 0 1 1 0 0 1 1 1 0 1 2 0 0 3 1 2 1 0 1 0 0 0 16 0 1917.9625 P51531;A0A0U1RQZ9;F6VDE0;B4DK35;B4DSC8 P51531 1112 1127 SMARCA2 Probable global transcription activator SNF2L2 yes no 2 0.019182 98 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3764 1362 3858 13494 20379 20379 1 FNFFVNK QRMEAENLASVIDARFNFFVNKILPQYRDA LASVIDARFNFFVNKILPQYRDAVMSHTLI R F N N K I 0 0 2 0 0 0 0 0 0 0 0 1 0 3 0 0 0 0 0 1 0 0 7 0 914.46504 A8K0P8;Q68CQ4;B3KVX2 A8K0P8 595 601 DIEXF Digestive organ expansion factor homolog yes no 2 0.027367 84.359 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1046500 1046500 0 0 0 0 1046500 1046500 0 3765 577 3859 13495;13496 20380;20381 20381 2 FNFGEEEFK QALFPACVLKNAELKFNFGEEEFKFPPKDG KNAELKFNFGEEEFKFPPKDGFVALSKAPD K F N F K F 0 0 1 0 0 0 3 1 0 0 0 1 0 3 0 0 0 0 0 0 0 0 9 0 1145.5029 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 159 167 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 1.4229E-05 140.35 4 2 0.82104 1.0273 28.074 6 Median 0.72971 0.91465 11.154 4 0 Median 1.0559 1.5796 14.016 2 0 Median 98111000 52933000 45178000 77841000 43531000 34310000 20270000 9401600 10868000 3766 378 3860 13497;13498;13499;13500;13501;13502 20382;20383;20384;20385;20386;20387;20388;20389;20390;20391;20392;20393;20394;20395;20396 20384 15 FNFVGK KLKERVLIPVKQYPKFNFVGKILGPQGNTI LIPVKQYPKFNFVGKILGPQGNTIKRLQEE K F N G K I 0 0 1 0 0 0 0 1 0 0 0 1 0 2 0 0 0 0 0 1 0 0 6 0 710.37516 B4DDX2;B2R7B5;Q07666;B4E043 B4DDX2 150 155 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 no no 2 0.037366 80.498 1 0.78695 0.97912 NaN 1 Median 0.78695 0.97912 NaN 1 0 Median NaN NaN NaN 0 0 Median 32143000 18715000 13429000 32143000 18715000 13429000 0 0 0 3767 704 3861 13503 20397 20397 1 FNHPVEVQK RHGDRVILGGDHYFRFNHPVEVQKGKRPSG GDHYFRFNHPVEVQKGKRPSGRDTPISEGP R F N Q K G 0 0 1 0 0 1 1 0 1 0 0 1 0 1 1 0 0 0 0 2 0 0 9 0 1096.5665 Q15058 Q15058 898 906 KIF14 Kinesin-like protein KIF14 yes yes 2 0.0046477 99.802 1 0.79165 0.99867 NaN 1 Median 0.79165 0.99867 NaN 1 0 Median NaN NaN NaN 0 0 Median 5834700 2986100 2848700 5834700 2986100 2848700 0 0 0 3768 1504 3862 13504 20398 20398 1 FNIPPSTLSTILK VEENPDLRKGEIARRFNIPPSTLSTILKNK RRFNIPPSTLSTILKNKRAILASERKYGVA R F N L K N 0 0 1 0 0 0 0 0 0 2 2 1 0 1 2 2 2 0 0 0 0 0 13 0 1429.8181 P07199;Q71VN4 P07199 35 47 CENPB Major centromere autoantigen B yes no 2 0.020828 62.633 2 0.82961 1.0612 17.218 2 Median 0.82961 1.0612 17.218 2 0 Median NaN NaN NaN 0 0 Median 9635700 5629200 4006500 9635700 5629200 4006500 0 0 0 3769 1239 3863 13505;13506 20399;20400 20400 2 FNISTDRR DTKSKVTLLEGDHVRFNISTDRRDKLERAT LEGDHVRFNISTDRRDKLERATNIEVLSNT R F N R R D 0 2 1 1 0 0 0 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 8 1 1007.5148 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0 Q9GZV0 287 294 CSDE1;UNR Cold shock domain-containing protein E1 yes no 2;3 0.015331 66.073 1 1 6.7467 8.8843 NaN 1 Median NaN NaN NaN 0 0 Median 6.7467 8.8843 NaN 1 0 Median 7002400 5006200 1996200 4589700 4589700 0 2412700 416500 1996200 3770 31 3864 13507;13508 20401;20402 20401 2 FNLDLTHPVEDGIFDSGNFEQFLR ______________________________ EDGIFDSGNFEQFLREKVKVNGKTGNLGNV R F N L R E 0 1 2 3 0 1 2 2 1 1 3 0 0 4 1 1 1 0 0 1 0 0 24 0 2809.3348 C9JYQ9;H0Y8C2;Q6P5R6 C9JYQ9 15 38 RPL22L1 60S ribosomal protein L22-like 1 yes no 3 4.09E-09 58.904 1 0.81149 1.0825 NaN 1 Median 0.81149 1.0825 NaN 1 0 Median NaN NaN NaN 0 0 Median 22071000 12688000 9382900 22071000 12688000 9382900 0 0 0 3771 945 3865 13509 20403;20404 20403 2 FNLFPCVLGSPCFIAGR RYSYLQQDLPDNPERFNLFPCVLGSPCFIA LFPCVLGSPCFIAGRHYWEVEVGDKAKWTI R F N G R H 1 1 1 0 2 0 0 2 0 1 2 0 0 3 2 1 0 0 0 1 0 0 17 0 1953.9593 P14373;A0A140T9B9;A0A140T9N6;A0A140T9V9;H0Y551 P14373 354 370 TRIM27 Zinc finger protein RFP yes no 2 0.00019869 95.183 2 0.7729 1.0877 25.764 2 Median 0.7729 1.0877 25.764 2 0 Median NaN NaN NaN 0 0 Median 6711500 3739800 2971800 6711500 3739800 2971800 0 0 0 3772 1266 3866 13510;13511 20405;20406;20407;20408 20407 4 FNLILR LPPEKELAMPGEDLKFNLILRQPMILEKGQ LAMPGEDLKFNLILRQPMILEKGQRFTLRD K F N L R Q 0 1 1 0 0 0 0 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 6 0 774.47521 P49411 P49411 406 411 TUFM Elongation factor Tu, mitochondrial yes yes 2 0.034456 102.12 4 0.45248 0.61296 8.8385 4 Median 0.45248 0.61296 8.8385 4 0 Median NaN NaN NaN 0 0 Median 166230000 112030000 54201000 166230000 112030000 54201000 0 0 0 3773 1350 3867 13512;13513;13514;13515 20409;20410;20411;20412 20412 4 FNLSQESSYIATQYSLRPR HIERNDAPHKNTQEKFNLSQESSYIATQYS QESSYIATQYSLRPRREEVKLKEIDSKEEK K F N P R R 1 2 1 0 0 2 1 0 0 1 2 0 0 1 1 4 1 0 2 0 0 0 19 1 2259.1284 A0A024R3R5 A0A024R3R5 153 171 LBR yes yes 3 0.00041641 91.969 3 0.52495 0.69589 0.48855 2 Median 0.52495 0.69589 0.48855 2 0 Median NaN NaN NaN 0 0 Median 21881000 15369000 6511800 21881000 15369000 6511800 0 0 0 3774 106 3868 13516;13517;13518 20413;20414;20415;20416;20417 20415 5 FNLSSSISSENSLIK HKPQSDFTNDALSPKFNLSSSISSENSLIK FNLSSSISSENSLIKGGAANQALLHSKSKQ K F N I K G 0 0 2 0 0 0 1 0 0 2 2 1 0 1 0 6 0 0 0 0 0 0 15 0 1624.8308 B2RWP5;Q96L73;Q8NB95;Q96MN8;A4QPE5 B2RWP5 486 500 NSD1 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 2 0.0075488 90.614 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2753900 0 2753900 2753900 0 2753900 0 0 0 3775 749 3869 13519;13520 20418;20419 20418 2 FNLTGLNEQVPHYR NEFFCEVDEDYIQDKFNLTGLNEQVPHYRQ KFNLTGLNEQVPHYRQALDMILDLEPDEEL K F N Y R Q 0 1 2 0 0 1 1 1 1 0 2 0 0 1 1 0 1 0 1 1 0 0 14 0 1686.8478 N0E4C7;Q5SRQ6;P67870;N0E466;Q5SRQ3;N0E472;A0A0G2JM12;N0E650;N0E638;N0E6J1;B4DUJ4;N0E644;A0A0G2JM58 N0E4C7 34 47 CSNK2B;CSNK2B-LY6G5B-1181;CSNK2B-LY6G5B--991;CSNK2B-LY6G5B-1072;CSNK2B-LY6G5B-560;CSNK2B-LY6G5B-562 Casein kinase II subunit beta yes no 3 2.1477E-05 105.66 3 1 0.70145 0.93871 14.147 4 Median 0.64222 0.85601 12.363 3 0 Median 0.78784 1.0914 NaN 1 0 Median 60805000 33739000 27066000 51308000 29408000 21900000 9496600 4330400 5166200 3776 1162 3870 13521;13522;13523;13524 20420;20421;20422;20423;20424 20421 5 FNNFLK RAFREEAIKFSEEQRFNNFLKALQEKVEIK AIKFSEEQRFNNFLKALQEKVEIKQLNHFW R F N L K A 0 0 2 0 0 0 0 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 6 0 781.41227 P13010;Q53T09 P13010 655 660 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 1.4577E-06 154.91 4 2 0.58585 0.89353 11.555 5 Median 0.59278 0.77058 15.587 3 0 Median 0.55982 0.89582 0.36132 2 0 Median 457890000 299660000 158240000 356150000 235010000 121140000 101740000 64645000 37095000 3777 1262 3871 13525;13526;13527;13528;13529;13530 20425;20426;20427;20428;20429;20430;20431;20432 20426 7 FNPFVTSDR ______________________________ ______________________________ K F N D R S 0 1 1 1 0 0 0 0 0 0 0 0 0 2 1 1 1 0 0 1 0 0 9 0 1081.5193 Q9UNX3;E5RIT6;E5RHH1;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;Q6IBH6;P61254;J3KTJ8;A0A024RBF6;J3KSS0 Q9UNX3 3 11 RPL26L1;RPL26;hCG_26523 60S ribosomal protein L26-like 1;60S ribosomal protein L26 no no 2 1.8211E-05 141.52 5 2 0.79146 1.0861 36.175 6 Median 0.80447 1.1098 3.0197 4 0 Median 0.33413 0.55215 2.0854 2 0 Median 2824000000 1601800000 1222200000 2370900000 1263500000 1107400000 453120000 338310000 114810000 3778 1797;1142 3872 13531;13532;13533;13534;13535;13536;13537 20433;20434;20435;20436;20437;20438;20439;20440;20441;20442;20443;20444;20445;20446 20436 14 FNPIETFLLGSCASDR ICSMTWGFDSISSVKFNPIETFLLGSCASD NPIETFLLGSCASDRNIVLYDMRQATPLKK K F N D R N 1 1 1 1 1 0 1 1 0 1 2 0 0 2 1 2 1 0 0 0 0 0 16 0 1825.8669 A0A087WT20;Q9NV06;A0A087X1F8 A0A087WT20 356 371 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2 4.7458E-34 190.34 3 1.1806 1.5707 16.101 3 Plateau 1.1806 1.5707 16.101 3 0 Plateau NaN NaN NaN 0 0 Median 66861000 30100000 36762000 66861000 30100000 36762000 0 0 0 3779 331 3873 13538;13539;13540 20447;20448;20449;20450;20451 20447 5 FNQLVEQYK QVSRKKAKGNKTETRFNQLVEQYKQKLLGP NKTETRFNQLVEQYKQKLLGPSKGAPLAKR R F N Y K Q 0 0 1 0 0 2 1 0 0 0 1 1 0 1 0 0 0 0 1 1 0 0 9 0 1167.5924 A0A024R753;Q9NW13 A0A024R753 730 738 RBM28 RNA-binding protein 28 yes no 2 5.3543E-05 153.78 3 2 0.81591 1.2008 12.697 3 Median 1.1187 1.4179 NaN 1 0 Median 0.78243 1.1519 5.883 2 0 Median 42438000 12776000 29662000 26916000 4000600 22915000 15522000 8775300 6747000 3780 169 3874 13541;13542;13543;13544;13545 20452;20453;20454;20455;20456;20457 20452 6 FNQLVHFLR SRLENYYMVCKADEKFNQLVHFLRNHKQER CKADEKFNQLVHFLRNHKQERHLVFFSTCA K F N L R N 0 1 1 0 0 1 0 0 1 0 2 0 0 2 0 0 0 0 0 1 0 0 9 0 1172.6455 B4DVE4;F5H5U2;A0A024RBS0;Q8NHQ9;Q8TEC9 B4DVE4 255 263 DDX55 ATP-dependent RNA helicase DDX55 yes no 3 0.020346 28.727 1 1.2171 1.6753 NaN 1 Median 1.2171 1.6753 NaN 1 0 Median NaN NaN NaN 0 0 Median 4725700 1912600 2813100 4725700 1912600 2813100 0 0 0 3781 280 3875 13546 20458 20458 1 FNTGPVGK QIRMCKDLKHLIYYRFNTGPVGKGPGCGFW KHLIYYRFNTGPVGKGPGCGFWAAGWRVWL R F N G K G 0 0 1 0 0 0 0 2 0 0 0 1 0 1 1 0 1 0 0 1 0 0 8 0 818.42865 Q6P2Q9;I3L0J9 Q6P2Q9 616 623 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.013568 81.784 2 0.59052 0.76449 1.2517 2 Median 0.59052 0.76449 1.2517 2 0 Median NaN NaN NaN 0 0 Median 18415000 11736000 6679200 18415000 11736000 6679200 0 0 0 3782 1592 3876 13547;13548 20459;20460;20461 20461 3 FNTPALK VEVALNKLLDPIREKFNTPALKKLASAAYP LLDPIREKFNTPALKKLASAAYPDPSKQKP K F N L K K 1 0 1 0 0 0 0 0 0 0 1 1 0 1 1 0 1 0 0 0 0 0 7 0 789.43849 A0A0S2Z4R1;P54577;A0A0C4DGZ5 A0A0S2Z4R1 328 334 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.02551 63.287 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2701400 2701400 0 2701400 2701400 0 0 0 0 3783 468 3877 13549 20462 20462 1 FNTTSVIK EPRGNEEAQIFRPLKFNTTSVIKIAVEPVN QIFRPLKFNTTSVIKIAVEPVNPSELPKML K F N I K I 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 1 2 0 0 1 0 0 8 0 908.49673 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 533 540 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.0046217 95.352 3 0.57609 0.72363 0.47742 3 Median 0.57609 0.72363 0.47742 3 0 Median NaN NaN NaN 0 0 Median 39697000 23195000 16502000 39697000 23195000 16502000 0 0 0 3784 654 3878 13550;13551;13552 20463;20464;20465;20466 20466 4 FNVEDGEIVQQVR WALGVVPFSHVNIVKFNVEDGEIVQQVRVS VKFNVEDGEIVQQVRVSTPWLQHLSGACGV K F N V R V 0 1 1 1 0 2 2 1 0 1 0 0 0 1 0 0 0 0 0 3 0 0 13 0 1531.7631 Q8N766 Q8N766 202 214 EMC1 ER membrane protein complex subunit 1 yes yes 2 0.00013535 115.7 1 1 0.51018 0.69586 32.36 2 Median 0.41113 0.55354 NaN 1 0 Median 0.63309 0.87478 NaN 1 0 Median 9160700 5881500 3279300 3178300 2205900 972340 5982500 3675500 2306900 3785 1642 3879 13553;13554 20467;20468 20467 2 FNVELIVQCIR PDGGKIPKDILDEEKFNVELIVQCIRLSEM DEEKFNVELIVQCIRLSEMPQTHHHALLLL K F N I R L 0 1 1 0 1 1 1 0 0 2 1 0 0 1 0 0 0 0 0 2 0 0 11 0 1389.7439 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8;Q8N7L7 B2RWN5 1283 1293 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 9.5759E-19 196.79 3 0.86735 1.1292 4.0319 3 Plateau 0.86735 1.1292 4.0319 3 0 Plateau NaN NaN NaN 0 0 Median 50321000 27632000 22688000 50321000 27632000 22688000 0 0 0 3786 748 3880 13555;13556;13557 20469;20470;20471;20472;20473;20474 20469 6 FNVIQPGPIK MSKSLAAEWGKYGMRFNVIQPGPIKTKGAF KYGMRFNVIQPGPIKTKGAFSRLDPTGTFE R F N I K T 0 0 1 0 0 1 0 1 0 2 0 1 0 1 2 0 0 0 0 1 0 0 10 0 1111.639 A0A024R9D7;Q16698;H0YAW3 A0A024R9D7 235 244 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes no 2 0.012493 60.91 1 2 0.44804 0.57238 49.308 2 Median 0.66039 0.81116 NaN 1 0 Median 0.30397 0.40389 NaN 1 0 Median 9032500 6656800 2375700 3817400 2301300 1516100 5215000 4355400 859610 3787 220 3881 13558;13559;13560 20475;20476;20477 20477 3 FNVLLTTYEYIIK PAARRAFVPQLRSGKFNVLLTTYEYIIKDK GKFNVLLTTYEYIIKDKHILAKIRWKYMIV K F N I K D 0 0 1 0 0 0 1 0 0 2 2 1 0 1 0 0 2 0 2 1 0 0 13 0 1615.8861 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;Q59FZ6;B4E0F1;B4DSI8;A0A0U1RQE1;P51531;A0A0U1RQZ9;F6VDE0;B4DK35;B4DSC8 A7E2E1 853 865 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 2.0347E-08 108.31 3 0.74819 0.95791 8.6549 2 Median 0.74819 0.95791 8.6549 2 0 Median NaN NaN NaN 0 0 Median 9950900 5333000 4617900 9950900 5333000 4617900 0 0 0 3788 403;1362 3882 13561;13562;13563 20478;20479;20480;20481;20482 20481 5 FNVLQYVVPEVK QAPPTRIGLINDMVRFNVLQYVVPEVKDLY MVRFNVLQYVVPEVKDLYNWLEVEFNPLKL R F N V K D 0 0 1 0 0 1 1 0 0 0 1 1 0 1 1 0 0 0 1 4 0 0 12 0 1433.7919 Q05BS0;Q6P1R0;Q3B770;Q7Z5T5;Q24JU4;J9R021;Q14152 Q05BS0 377 388 EIF3A;eIF3a Eukaryotic translation initiation factor 3 subunit A yes no 2 0.0014778 81.017 2 0.72914 0.93436 NaN 1 Median 0.72914 0.93436 NaN 1 0 Median NaN NaN NaN 0 0 Median 3554700 2415500 1139200 3554700 2415500 1139200 0 0 0 3789 1148 3883 13564;13565 20483;20484 20484 2 FNVWDTAGQEK EVHPLVFHTNRGPIKFNVWDTAGQEKFGGL GPIKFNVWDTAGQEKFGGLRDGYYIQEMGI K F N E K F 1 0 1 1 0 1 1 1 0 0 0 1 0 1 0 0 1 1 0 1 0 0 11 0 1293.599 B5MDF5;P62826;J3KQE5;F5H018;H0YFC6 B5MDF5 61 71 RAN GTP-binding nuclear protein Ran yes no 2 1.6026E-05 99.257 2 1.2944 1.9567 3.1542 2 Median NaN NaN NaN 0 0 Median 1.2944 1.9567 3.1542 2 0 Median 39504000 18008000 21496000 0 0 0 39504000 18008000 21496000 3790 901 3884 13566;13567 20485;20486;20487 20485 3 FNYGFEYLGVQDK TDVLQQLSIQMANAKFNYGFEYLGVQDKLV AKFNYGFEYLGVQDKLVQTPLTDRCYLTMT K F N D K L 0 0 1 1 0 1 1 2 0 0 1 1 0 2 0 0 0 0 2 1 0 0 13 0 1578.7355 Q14204 Q14204 1866 1878 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0073157 77.674 2 0.67018 0.87098 0.33259 2 Median 0.67018 0.87098 0.33259 2 0 Median NaN NaN NaN 0 0 Median 7502100 4155300 3346800 7502100 4155300 3346800 0 0 0 3791 1483 3885 13568;13569 20488;20489;20490 20488 3 FNYSVQEESDTCLGGK ANAEEEFFYEKAILKFNYSVQEESDTCLGG NYSVQEESDTCLGGKWSFDDVPMTPLRTVM K F N G K W 0 0 1 1 1 1 2 2 0 0 1 1 0 1 0 2 1 0 1 1 0 0 16 0 1832.7887 Q9P287 Q9P287 264 279 BCCIP BRCA2 and CDKN1A-interacting protein yes yes 2 1.2042E-50 215.77 5 1.235 1.6017 21.342 4 Median 1.235 1.6017 21.342 4 0 Median NaN NaN NaN 0 0 Median 15356000 6629800 8726500 15356000 6629800 8726500 0 0 0 3792 1779 3886 13570;13571;13572;13573;13574 20491;20492;20493;20494;20495;20496;20497;20498;20499 20491 9 FPAGHSVIQLAR LKGRKLDDTPSGAGKFPAGHSVIQLARRQD AGKFPAGHSVIQLARRQDSDLVQCGVTSPS K F P A R R 2 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 1 0 0 12 0 1294.7146 Q9HC52;C9J6K3 Q9HC52 241 252 CBX8 Chromobox protein homolog 8 yes no 3 0.008156 48.659 3 1 0.77593 1.0503 25.758 4 Median 0.82032 1.0854 12.988 3 0 Median 0.51561 0.70623 NaN 1 0 Median 30556000 16094000 14461000 24809000 12420000 12389000 5746900 3674200 2072700 3793 1750 3887 13575;13576;13577;13578 20500;20501;20502;20503;20504;20505 20504 6 FPASVPTGAQDLISK SHNETYRRIVKVDLKFPASVPTGAQDLISK FPASVPTGAQDLISKLLRHNPSERLPLAQV K F P S K L 2 0 0 1 0 1 0 1 0 1 1 1 0 1 2 2 1 0 0 1 0 0 15 0 1529.809 B2RC06 B2RC06 292 306 yes yes 2 4.2879E-21 170.18 3 0.99656 1.3049 2.9215 3 Median 0.99656 1.3049 2.9215 3 0 Median NaN NaN NaN 0 0 Median 387370000 187650000 199730000 387370000 187650000 199730000 0 0 0 3794 731 3888 13579;13580;13581 20506;20507;20508;20509;20510;20511 20507 6 FPCLEEK GSRALQLLQMYYEGRFPCLEEKVLETPQEI LQMYYEGRFPCLEEKVLETPQEIHTVSSEA R F P E K V 0 0 0 0 1 0 2 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 7 0 921.4266 Q9H0A0;A0A087WV29 Q9H0A0 656 662 NAT10 N-acetyltransferase 10 yes no 2 0.004339 143.02 3 1 0.84 1.0558 11.139 4 Median 0.86697 1.1018 5.2219 3 0 Median 0.57853 0.87444 NaN 1 0 Median 85235000 47051000 38184000 69981000 38120000 31861000 15253000 8930600 6322700 3795 1730 3889 13582;13583;13584;13585 20512;20513;20514;20515;20516;20517;20518 20512 7 FPDRLAEDEGDSEPEAVGQSR KHLPGHPYVRRKRKKFPDRLAEDEGDSEPE EDEGDSEPEAVGQSRGRRQKK_________ K F P S R G 2 2 0 3 0 1 4 2 0 0 1 0 0 1 2 2 0 0 0 1 0 0 21 1 2303.0302 Q9UIG0 Q9UIG0 1457 1477 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 5.3296E-06 59.614 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20815000 0 20815000 20815000 0 20815000 0 0 0 3796 1786 3890 13586;13587 20519;20520 20519 2 FPEVIINFPDPAQK IIGQKGERIREIRDKFPEVIINFPDPAQKS KFPEVIINFPDPAQKSDIVQLRGPKNEVEK K F P Q K S 1 0 1 1 0 1 1 0 0 2 0 1 0 2 3 0 0 0 0 1 0 0 14 0 1613.8453 B2R5V9;A0A024R4E5;Q00341;Q6ZS03;Q96CF6;H0Y394;Q6ZN49;H7BZC3 B2R5V9 537 550 HDLBP Vigilin yes no 2 0.0035283 83.182 2 0.68163 0.86365 NaN 1 Median 0.68163 0.86365 NaN 1 0 Median NaN NaN NaN 0 0 Median 3838000 3158400 679580 3838000 3158400 679580 0 0 0 3797 122 3891 13588;13589 20521;20522 20521 2 FPFGISPAQSHR EDGAKSSEAIKESSKFPFGISPAQSHRNIK SSKFPFGISPAQSHRNIKILEDEPHSKDET K F P H R N 1 1 0 0 0 1 0 1 1 1 0 0 0 2 2 2 0 0 0 0 0 0 12 0 1342.6782 A0A0S2Q0B1;O14497;Q96T01;Q96SM7;Q8NC65;H0Y488;A0A1B0GTU5;Q96SY8 A0A0S2Q0B1 1939 1950 ARID1A AT-rich interactive domain-containing protein 1A yes no 3 0.0087065 35.793 2 1.8211 2.3604 11.549 2 Median NaN NaN NaN 0 0 Median 1.8211 2.3604 11.549 2 0 Median 9241300 3990700 5250600 0 0 0 9241300 3990700 5250600 3798 447 3892 13590;13591 20523;20524 20523 2 FPGQLNADLR HLVSATMSGVTTCLRFPGQLNADLRKLAVN TTCLRFPGQLNADLRKLAVNMVPFPRLHFF R F P L R K 1 1 1 1 0 1 0 1 0 0 2 0 0 1 1 0 0 0 0 0 0 0 10 0 1129.588 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;B4DMU8;Q96B85;B4DXZ5;Q1KSF8;G3V2A3;Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;Q96HX0;M0R2D3;Q9BVA1;Q13885;A0A024QZU2;B2R6L0;O43209;B7Z4N1;Q9UGA2;A5D907;A5D906;A1L195;A6NNZ2;A1L196;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;Q2NKY5;Q3ZCM7;A0A075B736;Q5SQY0;A0A183YE00;P04350;B4DJ43;B4DE77;Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q53G92;Q3ZCR3;Q9BUF5;K7ESM5;B3KS31;B4DP54;B4E386 Q5JP53 224 233 TUBB;XTP3TPATP1;TUBB3;TUBB2C;TUBB4B;TUBB4A;TUBB2B;TUBB2A;DKFZp566F223;TUBB1;TUBB6;TUBB8 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-3 chain;Tubulin beta-6 chain no no 2 5.5297E-05 97.965 5 2 4.4249 7.1046 145.94 4 Linear 0.33328 0.4498 10.071 2 0 Median 3.554 5.6215 3.1407 2 0 Median 136020000 72905000 63112000 67124000 57978000 9146100 68893000 14927000 53966000 3799 1241;1423;1230;1479;416;1528;1716;1532 3893 13592;13593;13594;13595;13596;13597;13598 20525;20526;20527;20528;20529;20530;20531;20532;20533;20534;20535;20536;20537;20538;20539 20538 15 FPGQLNADLRK HLVSATMSGVTTCLRFPGQLNADLRKLAVN TCLRFPGQLNADLRKLAVNMVPFPRLHFFM R F P R K L 1 1 1 1 0 1 0 1 0 0 2 1 0 1 1 0 0 0 0 0 0 0 11 1 1257.683 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;B4DMU8;Q96B85;B4DXZ5;Q1KSF8;G3V2A3;Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;Q96HX0;M0R2D3;Q9BVA1;Q13885;A0A024QZU2;B2R6L0;O43209;B7Z4N1;Q9UGA2;A5D907;A5D906;A1L195;A6NNZ2;A1L196;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;Q2NKY5;Q3ZCM7;A0A075B736;Q5SQY0;A0A183YE00;P04350;B4DJ43;B4DE77;Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q53G92;Q3ZCR3;Q9BUF5;K7ESM5;B3KS31;B4DP54;B4E386 Q5JP53 224 234 TUBB;XTP3TPATP1;TUBB3;TUBB2C;TUBB4B;TUBB4A;TUBB2B;TUBB2A;DKFZp566F223;TUBB1;TUBB6;TUBB8 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-3 chain;Tubulin beta-6 chain no no 2;3 0.00025527 98.754 4 0.37782 0.49859 8.8015 3 Median 0.37782 0.49859 8.8015 3 0 Median NaN NaN NaN 0 0 Median 256090000 192020000 64077000 256090000 192020000 64077000 0 0 0 3800 1241;1423;1230;1479;416;1528;1716;1532 3894 13599;13600;13601;13602 20540;20541;20542;20543;20544;20545;20546 20543 7 FPGYDSESK GAVDGGLSIPHSTKRFPGYDSESKEFNAEV PHSTKRFPGYDSESKEFNAEVHRKHIMGQN R F P S K E 0 0 0 1 0 0 1 1 0 0 0 1 0 1 1 2 0 0 1 0 0 0 9 0 1028.4451 A2RUM7;P46777;B3KTM6;Q59GX9 A2RUM7 180 188 RPL5 60S ribosomal protein L5 yes no 2 0.011222 61.679 2 0.62693 0.95074 1.8482 2 Median NaN NaN NaN 0 0 Median 0.62693 0.95074 1.8482 2 0 Median 42645000 26842000 15803000 0 0 0 42645000 26842000 15803000 3801 540 3895 13603;13604 20547;20548;20549;20550 20550 4 FPLPHR CRRPAVKQFHDSKIKFPLPHRVLRRQHKPR KQFHDSKIKFPLPHRVLRRQHKPRFTTKRP K F P H R V 0 1 0 0 0 0 0 0 1 0 1 0 0 1 2 0 0 0 0 0 0 0 6 0 765.42859 Q02543;M0R3D6;M0R1A7;B2R4C0;M0R0P7;B4DM94;B4DUV3;Q53HD3;Q76N54 Q02543 152 157 RPL18A 60S ribosomal protein L18a yes no 2 0.033526 90.631 3 0.65652 0.90743 5.0539 2 Median 0.65652 0.90743 5.0539 2 0 Median NaN NaN NaN 0 0 Median 299220000 193410000 105810000 299220000 193410000 105810000 0 0 0 3802 1436 3896 13605;13606;13607 20551;20552;20553 20553 3 FPLQEENSVTHHEVK KIYSYMSPNKCSGMRFPLQEENSVTHHEVK FPLQEENSVTHHEVKCQGKPLAGIYRKREE R F P V K C 0 0 1 0 0 1 3 0 2 0 1 1 0 1 1 1 1 0 0 2 0 0 15 0 1792.8744 E3VVS3;A0A0C4DFR3;Q9NQR1;C9JKQ0 E3VVS3 38 52 SETD8 N-lysine methyltransferase SETD8 yes no 3 0.024762 46.66 2 1.2344 1.5611 6.2114 2 Median 1.2344 1.5611 6.2114 2 0 Median NaN NaN NaN 0 0 Median 18817000 8049400 10767000 18817000 8049400 10767000 0 0 0 3803 419 3897 13608;13609 20554;20555 20554 2 FPLTTESAMK SAPRRNKLDHYAIIKFPLTTESAMKKIEDN YAIIKFPLTTESAMKKIEDNNTLVFIVDVK K F P M K K 1 0 0 0 0 0 1 0 0 0 1 1 1 1 1 1 2 0 0 0 0 0 10 0 1123.5583 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750 H7BY10 81 90 RPL23A 60S ribosomal protein L23a yes no 2 5.7994E-09 162.97 12 6 0.97235 1.2594 21.847 16 Median 1.003 1.3002 5.3876 12 0 Median 0.55158 0.8758 30.29 4 0 Median 2960000000 1764500000 1195500000 1428900000 705130000 723800000 1531100000 1059400000 471690000 3804 658 3898;3899 13610;13611;13612;13613;13614;13615;13616;13617;13618;13619;13620;13621;13622;13623;13624;13625;13626;13627 20556;20557;20558;20559;20560;20561;20562;20563;20564;20565;20566;20567;20568;20569;20570;20571;20572;20573;20574;20575;20576;20577;20578;20579;20580;20581;20582;20583;20584;20585;20586;20587;20588 20577 231 33 FPLTTESAMKK SAPRRNKLDHYAIIKFPLTTESAMKKIEDN AIIKFPLTTESAMKKIEDNNTLVFIVDVKA K F P K K I 1 0 0 0 0 0 1 0 0 0 1 2 1 1 1 1 2 0 0 0 0 0 11 1 1251.6533 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750 H7BY10 81 91 RPL23A 60S ribosomal protein L23a yes no 2 0.010335 53.751 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3805 658 3900 13628 20589 20589 231 1 FPNLVDPWTPHLYAR VRSNLMVATGDLAIRFPNLVDPWTPHLYAR FPNLVDPWTPHLYARLRDPAQQVRKTAGLV R F P A R L 1 1 1 1 0 0 0 0 1 0 2 0 0 1 3 0 1 1 1 1 0 0 15 0 1824.9311 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1086 1100 NCAPD2 Condensin complex subunit 1 yes no 3 1.9932E-05 66.965 2 0.43635 0.67187 0.99561 2 Median NaN NaN NaN 0 0 Median 0.43635 0.67187 0.99561 2 0 Median 41623000 28483000 13140000 0 0 0 41623000 28483000 13140000 3806 757 3901 13629;13630 20590;20591;20592;20593 20590 4 FPQLDSTSFANSR TTVGSAEKRAYLQARFPQLDSTSFANSRDT ARFPQLDSTSFANSRDTSFEQHVLWHTGGK R F P S R D 1 1 1 1 0 1 0 0 0 0 1 0 0 2 1 3 1 0 0 0 0 0 13 0 1468.6947 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1710 1722 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00028189 89.805 3 2 2.291 3.1476 169.83 2 Median 0.69928 0.94718 NaN 1 0 Median 7.506 10.46 NaN 1 0 Median 33847000 15076000 18771000 15336000 13556000 1779900 18511000 1519500 16992000 3807 486 3902 13631;13632;13633;13634;13635 20594;20595;20596;20597;20598 20598 5 FPSINHD RSGSSSPDSEITELKFPSINHD________ DSEITELKFPSINHD_______________ K F P H D - 0 0 1 1 0 0 0 0 1 1 0 0 0 1 1 1 0 0 0 0 0 0 7 0 828.37662 P17812;B4E1E0 P17812 585 591 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.028512 60.39 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8258600 0 0 8258600 0 0 0 0 0 3808 1278 3903 13636 20599 20599 1 FPSLLTHNENMVAK QIPRILGPGLNKAGKFPSLLTHNENMVAKV KFPSLLTHNENMVAKVDEVKSTIKFQMKKV K F P A K V 1 0 2 0 0 0 1 0 1 0 2 1 1 1 1 1 1 0 0 1 0 0 14 0 1599.8079 P62906;Q1JQ76;A0A024RCW3 P62906 134 147 RPL10A 60S ribosomal protein L10a;Ribosomal protein yes no 3 2.8025E-05 96.756 5 1 0.75006 0.93393 10.062 6 Median 0.75572 0.93937 8.6085 5 0 Median 0.52055 0.8444 NaN 1 0 Median 144440000 86633000 57803000 91496000 52751000 38745000 52940000 33882000 19058000 3809 1415 3904;3905 13637;13638;13639;13640;13641;13642 20600;20601;20602;20603;20604;20605 20605 619 6 FPSTICTESFQFLDR SYQLSQTYYRIFTWRFPSTICTESFQFLDR FPSTICTESFQFLDRMRAAGKLDQPDRFSF R F P D R M 0 1 0 1 1 1 1 0 0 1 1 0 0 3 1 2 2 0 0 0 0 0 15 0 1846.856 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 1515 1529 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 6.0644E-05 89.301 2 0.67323 0.94348 NaN 1 Median 0.67323 0.94348 NaN 1 0 Median NaN NaN NaN 0 0 Median 9832700 7310300 2522400 9832700 7310300 2522400 0 0 0 3810 1457 3906 13643;13644 20606;20607 20607 2 FPTQISLAQLR NSQPPSGLSSNQLSKFPTQISLAQLRLQHM QLSKFPTQISLAQLRLQHMQQQQPPPRLIN K F P L R L 1 1 0 0 0 2 0 0 0 1 2 0 0 1 1 1 1 0 0 0 0 0 11 0 1272.719 A0A024R784;O15164;B4DYZ9;Q6ZSA6 A0A024R784 459 469 TRIM24 Transcription intermediary factor 1-alpha yes no 2 0.0015578 77.533 3 1 0.7356 1.0635 17.244 4 Linear 0.66774 0.93706 16.81 3 0 Plateau 0.70019 1.0298 NaN 1 0 Median 18618000 11559000 7059100 10673000 6627700 4045300 7944900 4931000 3013900 3811 171 3907 13645;13646;13647;13648 20608;20609;20610;20611 20610 4 FPVTDAVNK QACTGGIIDPSTGERFPVTDAVNKGLVDKI PSTGERFPVTDAVNKGLVDKIMVDRINLAQ R F P N K G 1 0 1 1 0 0 0 0 0 0 0 1 0 1 1 0 1 0 0 2 0 0 9 0 989.5182 Q15149;D3DWL0;Q96IE3 Q15149 4467 4475 PLEC;PLEC1 Plectin yes no 2 0.00028417 75.213 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3812 1507 3908 13649 20612 20612 1 FQAVVALAVGR LFTRIVQQKALPLTRFQAVVALAVGRLADK PLTRFQAVVALAVGRLADKSVLVCKNAIQL R F Q G R L 3 1 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 0 0 3 0 0 11 0 1129.6608 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 402 412 NCAPD2 Condensin complex subunit 1 yes no 2 4.5667E-12 144.12 4 3 0.59951 0.87023 15.527 6 Median 0.69403 0.94921 7.8413 3 0 Median 0.55694 0.86288 12.618 3 0 Plateau 177760000 107950000 69810000 107040000 61576000 45459000 70723000 46373000 24350000 3813 757 3909 13650;13651;13652;13653;13654;13655;13656 20613;20614;20615;20616;20617;20618;20619;20620;20621;20622;20623 20617 10 FQCGFGLTIG LTLALGAFLNHRKNKFQCGFGLTIG_____ HRKNKFQCGFGLTIG_______________ K F Q I G - 0 0 0 0 1 1 0 3 0 1 1 0 0 2 0 0 1 0 0 0 0 0 10 0 1098.5168 O96008 O96008 352 361 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes yes 1 0.021286 89.698 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6799100 0 0 6799100 0 0 0 0 0 3814 1226 3910 13657;13658;13659 20624;20625;20626 20625 3 FQDGVLEPDFPR CQGKTYLFKGSQYWRFQDGVLEPDFPRNIS YWRFQDGVLEPDFPRNISDGFGGIPDDAHL R F Q P R N 0 1 0 2 0 1 1 1 0 0 1 0 0 2 2 0 0 0 0 1 0 0 12 0 1418.683 CON__Q3ZBS7 CON__Q3ZBS7 226 237 yes yes 2 0.0016703 86.344 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3777700 3777700 0 3777700 3777700 0 0 0 0 + 3815 970 3911 13660;13661 20627;20628 20628 2 FQEAGELYNR KVFLHLADIYAKSEKFQEAGELYNRMLKRF AKSEKFQEAGELYNRMLKRFRQEKAVWIKY K F Q N R M 1 1 1 0 0 1 2 1 0 0 1 0 0 1 0 0 0 0 1 0 0 0 10 0 1225.5728 Q14690 Q14690 1707 1716 PDCD11 Protein RRP5 homolog yes yes 2 6.0154E-12 159.28 3 2 0.92016 1.2276 12.372 5 Median 1.0405 1.3948 8.6244 3 0 Median 0.71478 1.1117 0.41641 2 0 Median 135060000 70529000 64528000 87834000 44033000 43801000 47223000 26496000 20727000 3816 1494 3912 13662;13663;13664;13665;13666 20629;20630;20631;20632;20633;20634;20635;20636;20637;20638 20631 10 FQEEMDTVMK WFGNTRVIKQSSLQKFQEEMDTVMKDPYKV SSLQKFQEEMDTVMKDPYKVVMKQSKLPMS K F Q M K D 0 0 0 1 0 1 2 0 0 0 0 1 2 1 0 0 1 0 0 1 0 0 10 0 1256.5417 Q5T0F3;Q13823 Q5T0F3 95 104 GNL2 Nucleolar GTP-binding protein 2 yes no 2 0.0042383 57.55 1 0.49154 0.68142 NaN 1 Median NaN NaN NaN 0 0 Median 0.49154 0.68142 NaN 1 0 Median 4770800 3042900 1727900 0 0 0 4770800 3042900 1727900 3817 1477 3913 13667 20639 20639 664;665 1 FQELQLQLEK RLQGHEKEMKGQVNKFQELQLQLEKAKVEL GQVNKFQELQLQLEKAKVELIEKEKVLNKC K F Q E K A 0 0 0 0 0 3 2 0 0 0 3 1 0 1 0 0 0 0 0 0 0 0 10 0 1274.6871 P49454 P49454 315 324 CENPF Centromere protein F yes yes 2 0.01216 99.973 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3818 1351 3914 13668 20640 20640 1 FQETSDEFEAAR PNMKAMEKLESVRDKFQETSDEFEAARKRA RDKFQETSDEFEAARKRAKKAKQAFEQIKK K F Q A R K 2 1 0 1 0 1 3 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 12 0 1428.6157 Q14683;G8JLG1;V9GY57 Q14683 1038 1049 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.00010112 97.597 4 2 0.74105 1.0432 8.1863 4 Median 0.70624 0.97226 10.952 2 0 Median 0.74535 1.0583 3.0256 2 0 Median 29648000 17672000 11977000 11827000 7584100 4242800 17821000 10088000 7733800 3819 1492 3915 13669;13670;13671;13672;13673;13674 20641;20642;20643;20644;20645;20646;20647;20648;20649 20646 9 FQETSDEFEAARK PNMKAMEKLESVRDKFQETSDEFEAARKRA DKFQETSDEFEAARKRAKKAKQAFEQIKKE K F Q R K R 2 1 0 1 0 1 3 0 0 0 0 1 0 2 0 1 1 0 0 0 0 0 13 1 1556.7107 Q14683;G8JLG1;V9GY57 Q14683 1038 1050 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3 0.0075162 61.423 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7358600 7358600 0 7358600 7358600 0 0 0 0 3820 1492 3916 13675;13676 20650;20651 20651 2 FQFLQK YRSRSAFKLIQLNRRFQFLQKARALLDLCA FKLIQLNRRFQFLQKARALLDLCAAPGGWL R F Q Q K A 0 0 0 0 0 2 0 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 6 0 809.44357 Q8IY81;J3KS36;J3KS74;J3QSE2 Q8IY81 39 44 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 0.044897 166.39 1 2 0.65448 0.94132 6.6284 3 Plateau 0.67302 0.84828 NaN 1 0 Median 0.62996 0.95035 1.3498 2 0 Median 51428000 31166000 20263000 17898000 11042000 6855800 33530000 20123000 13407000 3821 1628 3917 13677;13678;13679 20652;20653;20654 20653 3 FQFLYDVQVPIVDK DLARAVREAASKRSRFQFLYDVQVPIVDKI RFQFLYDVQVPIVDKIRTIAQAVYGAKDIE R F Q D K I 0 0 0 2 0 2 0 0 0 1 1 1 0 2 1 0 0 0 1 3 0 0 14 0 1709.9029 A0A087WVM4;B7ZM99;Q6UB35;B2RD24 A0A087WVM4 790 803 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 2 0.0033111 72.265 2 0.45008 0.5716 NaN 1 Median 0.45008 0.5716 NaN 1 0 Median NaN NaN NaN 0 0 Median 3976500 2999600 976900 3976500 2999600 976900 0 0 0 3822 348 3918 13680;13681 20655;20656;20657 20657 3 FQGEDTVVIASK LNESEVNRGDKYIAKFQGEDTVVIASKPYA IAKFQGEDTVVIASKPYAFDRVFQSSTSQE K F Q S K P 1 0 0 1 0 1 1 1 0 1 0 1 0 1 0 1 1 0 0 2 0 0 12 0 1292.6612 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;M1V490;M1VPF9;M1V481;M1VPF7;M1VRN0;M1VKI9;M1VE89;Q6P164;Q2TA90;Q66K46 V9HW29 33 44 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5B-RET(NM_020630)_K22;R12;KIF5B-RET(NM_020975)_K22;R12;KIF5B-ALK_K17;A20;KIF5B-RET(NM_020630)_K15;R12;KIF5B-RET(NM_020975)_K15;R12;KIF5B-RET(NM_020630)_K16;R12;KIF5B-RET(NM_020975)_K16;R12 Kinesin-like protein;Kinesin-1 heavy chain yes no 2 0.010022 78.488 1 0.90998 1.1804 NaN 1 Median 0.90998 1.1804 NaN 1 0 Median NaN NaN NaN 0 0 Median 2123500 1239800 883750 2123500 1239800 883750 0 0 0 3823 978 3919 13682 20658 20658 1 FQHILR ______________________________ ______________________________ K F Q L R V 0 1 0 0 0 1 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 6 0 812.46571 P62269;A0A0G2JQH2;Q5GGW2 P62269 9 14 RPS18 40S ribosomal protein S18 yes no 2 0.044897 74.832 2 0.89203 1.2243 NaN 1 Median 0.89203 1.2243 NaN 1 0 Median NaN NaN NaN 0 0 Median 127410000 73279000 54134000 127410000 73279000 54134000 0 0 0 3824 1402 3920 13683;13684 20659;20660 20659 2 FQHYPHIK REKAAKDYNQKLKEKFQHYPHIKRIARHRH NQKLKEKFQHYPHIKRIARHRHLPKSIYSQ K F Q I K R 0 0 0 0 0 1 0 0 2 1 0 1 0 1 1 0 0 0 1 0 0 0 8 0 1068.5505 A0A087WT20;Q9NV06 A0A087WT20 533 540 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2 0.0063835 107.59 1 1.0252 1.2997 NaN 1 Median 1.0252 1.2997 NaN 1 0 Median NaN NaN NaN 0 0 Median 4858200 2380600 2477600 4858200 2380600 2477600 0 0 0 3825 331 3921 13685 20661 20661 1 FQIGDYLDIAITPPNR GRKGTDDSMTLQSQKFQIGDYLDIAITPPN QIGDYLDIAITPPNRAPPP___________ K F Q N R A 1 1 1 2 0 1 0 1 0 3 1 0 0 1 2 0 1 0 1 0 0 0 16 0 1831.9468 H7BZW6;X6RAL5;O00422 H7BZW6 124 139 SAP18 Histone deacetylase complex subunit SAP18 yes no 2 0.00096237 73.887 3 0.40535 0.54569 14.986 3 Median 0.40535 0.54569 14.986 3 0 Median NaN NaN NaN 0 0 Median 39435000 27633000 11802000 39435000 27633000 11802000 0 0 0 3826 1120 3922 13686;13687;13688 20662;20663;20664 20664 3 FQIQDISVETEDNK NHRLTLGLIWTIILRFQIQDISVETEDNKE RFQIQDISVETEDNKEKKSAKDALLLWCQM R F Q N K E 0 0 1 2 0 2 2 0 0 2 0 1 0 1 0 1 1 0 0 1 0 0 14 0 1664.7893 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;F8W6C1;O15020;A4QPE4 B2ZZ89 157 170 SPTBN1;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2 yes no 2 1.4864E-20 171.49 4 0.8025 0.99822 5.2988 4 Median 0.8025 0.99822 5.2988 4 0 Median NaN NaN NaN 0 0 Median 59139000 30385000 28754000 59139000 30385000 28754000 0 0 0 3827 346 3923 13689;13690;13691;13692 20665;20666;20667;20668;20669;20670;20671;20672;20673;20674 20667 10 FQIYFDNCPLLTIPGR DLKVIVMSATLDAGKFQIYFDNCPLLTIPG QIYFDNCPLLTIPGRTHPVEIFYTPEPERD K F Q G R T 0 1 1 1 1 1 0 1 0 2 2 0 0 2 2 0 1 0 1 0 0 0 16 0 1952.9819 O43143 O43143 300 315 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 6.6057E-60 222.73 5 0.62176 0.8298 7.5313 4 Median 0.62176 0.8298 7.5313 4 0 Median NaN NaN NaN 0 0 Median 96812000 58940000 37871000 96812000 58940000 37871000 0 0 0 3828 1180 3924 13693;13694;13695;13696;13697 20675;20676;20677;20678;20679;20680;20681;20682 20675 8 FQLPVFLDSHFVYSFSPVAGPNK LCGPCSVQAVVLNDKFQLPVFLDSHFVYSF SHFVYSFSPVAGPNKLFIRLTEAPSAKVKL K F Q N K L 1 0 1 1 0 1 0 1 1 0 2 1 0 4 3 3 0 0 1 3 0 0 23 0 2595.3162 Q99549 Q99549 813 835 MPHOSPH8 M-phase phosphoprotein 8 yes yes 3 4.2527E-14 122.19 4 0.58222 0.73825 5.1672 4 Median 0.58222 0.73825 5.1672 4 0 Median NaN NaN NaN 0 0 Median 30464000 19682000 10781000 30464000 19682000 10781000 0 0 0 3829 1705 3925 13698;13699;13700;13701 20683;20684;20685;20686;20687;20688;20689;20690 20684 8 FQPGETLTEILETPATSEQEAEHQR TILLNTKRLIVDVIRFQPGETLTEILETPA LETPATSEQEAEHQRAMQRRAIRDAKTPDK R F Q Q R A 2 1 0 0 0 3 6 1 1 1 2 0 0 1 2 1 4 0 0 0 0 0 25 0 2840.3464 A4QPB0;A0A024RC65;P46940;H0YLE8;B4E2M0;B4DNP4 A4QPB0 1398 1422 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 3 1.7234E-08 90.06 2 1 0.4931 0.67717 0.39177 2 Median 0.4931 0.67717 0.39177 2 0 Median NaN NaN NaN 0 0 Median 26320000 12572000 13748000 20767000 12572000 8195300 5552700 0 5552700 3830 287 3926 13702;13703;13704 20691;20692;20693;20694;20695 20692 5 FQPLFGDFAAEK LPKEKVPRGSGKKRKFQPLFGDFAAEKKNQ KRKFQPLFGDFAAEKKNQLELLRVMNSKKP K F Q E K K 2 0 0 1 0 1 1 1 0 0 1 1 0 3 1 0 0 0 0 0 0 0 12 0 1368.6714 Q15050 Q15050 254 265 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 0.00053905 96.113 3 2 0.81508 1.0698 14.422 5 Median 0.77455 1.0115 3.5159 3 0 Median 0.83295 1.3315 1.2013 2 0 Median 419170000 232440000 186730000 314880000 173330000 141540000 104290000 59104000 45188000 3831 1503 3927 13705;13706;13707;13708;13709 20696;20697;20698;20699;20700;20701;20702;20703 20697 8 FQPPQVPDQAPAEAPTEK QWRNRQKNKRRCKNKFQPPQVPDQAPAEAP PQVPDQAPAEAPTEKTEVSPVPRTDSHEAR K F Q E K T 3 0 0 1 0 3 2 0 0 0 0 1 0 1 5 0 1 0 0 1 0 0 18 0 1948.9531 O43159;E9PPY3 O43159 202 219 RRP8 Ribosomal RNA-processing protein 8 yes no 2 1.1142E-05 65.043 3 1 0.77853 1.0065 8.056 4 Median 0.83341 1.0629 7.2176 3 0 Median 0.62644 0.92677 NaN 1 0 Median 22336000 12528000 9807600 12354000 6644900 5708600 9982600 5883500 4099100 3832 1181 3928 13710;13711;13712;13713 20704;20705;20706;20707;20708;20709;20710 20707 7 FQQAVDAVEEFLR HAHKEEMIKINKGKRFQQAVDAVEEFLRRA KRFQQAVDAVEEFLRRAKGKDQTSSHNSSD R F Q L R R 2 1 0 1 0 2 2 0 0 0 1 0 0 2 0 0 0 0 0 2 0 0 13 0 1550.7729 K7EMM8;D3DUE6;K7EQB2;Q49A26;D3DUE7 Q49A26 67 79 GLYR1;N-PAC Putative oxidoreductase GLYR1 no no 2 4.325E-08 99.283 2 2 0.72884 1.0506 9.4269 4 Median 0.86721 1.1558 10.874 2 0 Median 0.65679 1.0237 1.0351 2 0 Median 76074000 44118000 31955000 26345000 13622000 12724000 49728000 30497000 19231000 3833 982;1533;1151 3929 13714;13715;13716;13717 20711;20712;20713;20714;20715;20716;20717 20714 7 FQQAVDAVEEFLRR HAHKEEMIKINKGKRFQQAVDAVEEFLRRA RFQQAVDAVEEFLRRAKGKDQTSSHNSSDD R F Q R R A 2 2 0 1 0 2 2 0 0 0 1 0 0 2 0 0 0 0 0 2 0 0 14 1 1706.874 K7EMM8;D3DUE6;K7EQB2;Q49A26;D3DUE7 Q49A26 67 80 GLYR1;N-PAC Putative oxidoreductase GLYR1 no no 3 4.4871E-07 81.494 4 2 0.75351 1.1027 10.23 5 Median 0.79209 1.0718 11.337 4 0 Median 0.73803 1.1226 NaN 1 0 Median 61929000 37683000 24246000 36471000 19329000 17142000 25457000 18354000 7103400 3834 982;1533;1151 3930 13718;13719;13720;13721;13722;13723 20718;20719;20720;20721;20722;20723;20724;20725;20726;20727;20728 20724 11 FQSAAIGALQEASEAYLVGLFEDTNLCAIHAK RLVREIAQDFKTDLRFQSAAIGALQEASEA VGLFEDTNLCAIHAKRVTIMPKDIQLARRI R F Q A K R 7 0 1 1 1 2 3 2 1 2 4 1 0 2 0 2 1 0 1 1 0 0 32 0 3436.6973 B2R4P9;P84243;K7EK07;B2R6Y1;A8K4Y7 B2R4P9 85 116 H3F3A;H3F3B Histone H3;Histone H3.3 yes no 3;4 2.4735E-201 247.68 9 0.65375 0.86831 21.058 9 Median 0.65375 0.86831 21.058 9 0 Median NaN NaN NaN 0 0 Median 9389500000 5632900000 3756500000 9389500000 5632900000 3756500000 0 0 0 3835 685 3931 13724;13725;13726;13727;13728;13729;13730;13731;13732 20729;20730;20731;20732;20733;20734;20735;20736;20737;20738;20739;20740;20741;20742;20743;20744;20745 20743 17 FQSIVIGCALEDQK SACSSEVPHGPVDQKFQSIVIGCALEDQKK KFQSIVIGCALEDQKKIKRRLETLLRNIEN K F Q Q K K 1 0 0 1 1 2 1 1 0 2 1 1 0 1 0 1 0 0 0 1 0 0 14 0 1606.8025 B3KN59;B3KM36;O95816 B3KN59 155 168 BAG2 BAG family molecular chaperone regulator 2 yes no 2 7.3073E-27 179.35 4 0.63099 0.79326 7.8874 4 Median 0.63099 0.79326 7.8874 4 0 Median NaN NaN NaN 0 0 Median 70110000 42926000 27185000 70110000 42926000 27185000 0 0 0 3836 751 3932 13733;13734;13735;13736 20746;20747;20748;20749;20750;20751;20752;20753;20754 20750 9 FQSIVIGCALEDQKK SACSSEVPHGPVDQKFQSIVIGCALEDQKK FQSIVIGCALEDQKKIKRRLETLLRNIENS K F Q K K I 1 0 0 1 1 2 1 1 0 2 1 2 0 1 0 1 0 0 0 1 0 0 15 1 1734.8975 B3KN59;B3KM36;O95816 B3KN59 155 169 BAG2 BAG family molecular chaperone regulator 2 yes no 2;3 7.3084E-09 143.31 5 0.51878 0.63547 10.87 3 Median 0.51878 0.63547 10.87 3 0 Median NaN NaN NaN 0 0 Median 57848000 39813000 18035000 57848000 39813000 18035000 0 0 0 3837 751 3933 13737;13738;13739;13740;13741 20755;20756;20757;20758;20759;20760 20757 6 FQSSAVMALQEACEAYLVGLFEDTNLCAIHAK RLVREIAQDFKTDLRFQSSAVMALQEACEA VGLFEDTNLCAIHAKRVTIMPKDIQLARRI R F Q A K R 6 0 1 1 2 2 3 1 1 1 4 1 1 2 0 2 1 0 1 2 0 0 32 0 3585.6942 P68431 P68431 85 116 HIST1H3A Histone H3.1 yes yes 3 8.4714E-11 85.715 3 0.71359 0.94281 20.577 2 Median 0.71359 0.94281 20.577 2 0 Median NaN NaN NaN 0 0 Median 370700000 244670000 126030000 370700000 244670000 126030000 0 0 0 3838 1424 3934 13742;13743;13744 20761;20762;20763 20763 3 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAK RLVREIAQDFKTDLRFQSSAVMALQEASEA VGLFEDTNLCAIHAKRVTIMPKDIQLARRI R F Q A K R 6 0 1 1 1 2 3 1 1 1 4 1 1 2 0 3 1 0 1 2 0 0 32 0 3512.6956 Q71DI3 Q71DI3 85 116 HIST2H3A Histone H3.2 yes yes 3 3.0196E-97 178.77 4 0.80762 1.0564 41.197 4 Median 0.80762 1.0564 41.197 4 0 Median NaN NaN NaN 0 0 Median 1387100000 751050000 636030000 1387100000 751050000 636030000 0 0 0 3839 1605 3935 13745;13746;13747;13748 20764;20765;20766;20767;20768;20769 20765 5 FQSVIITSGTLSPLDIYPK SCMDASLAIKPVFERFQSVIITSGTLSPLD IITSGTLSPLDIYPKILDFHPVTMATFTMT R F Q P K I 0 0 0 1 0 1 0 1 0 3 2 1 0 1 2 3 2 0 1 1 0 0 19 0 2078.13 A8MX75;P18074;E7EVE9;K7EKF3;Q2TB79;Q6ZNQ5 A8MX75 427 445 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit yes no 2 5.16E-19 148.52 4 0.54717 0.72067 23.296 3 Median 0.54717 0.72067 23.296 3 0 Median NaN NaN NaN 0 0 Median 11373000 8626300 2746600 11373000 8626300 2746600 0 0 0 3840 660 3936 13749;13750;13751;13752 20770;20771;20772;20773 20771 4 FQTEIQTVNK IADTMVQIFKGLQERFQTEIQTVNKQFPCE GLQERFQTEIQTVNKQFPCEPFKFLEPTLR R F Q N K Q 0 0 1 0 0 2 1 0 0 1 0 1 0 1 0 0 2 0 0 1 0 0 10 0 1206.6245 D3DP78;A0A140VJW5;P14868;Q53T60;H7BZ35 D3DP78 288 297 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.0087918 68.846 2 2 0.39249 0.49693 1.7102 2 Median 0.39249 0.49693 1.7102 2 0 Median NaN NaN NaN 0 0 Median 16808000 5646100 11161000 9251300 5646100 3605100 7556300 0 7556300 3841 504 3937 13753;13754;13755;13756 20774;20775;20776;20777 20775 4 FQTIPLYYIEDHNGR LKSRDPIIFSVGWRRFQTIPLYYIEDHNGR FQTIPLYYIEDHNGRQRLLKYTPQHMHCGA R F Q G R Q 0 1 1 1 0 1 1 1 1 2 1 0 0 1 1 0 1 0 2 0 0 0 15 0 1864.9108 Q14692 Q14692 951 965 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 0.0025494 35.091 2 0.65689 0.95943 10.769 2 Median NaN NaN NaN 0 0 Median 0.65689 0.95943 10.769 2 0 Median 27704000 16712000 10992000 0 0 0 27704000 16712000 10992000 3842 1495 3938 13757;13758 20778;20779;20780 20780 3 FQTLQTSK PLAASKECLSVWNIKFQTLQTSKELPQGTS LSVWNIKFQTLQTSKELPQGTSGQLWYYGE K F Q S K E 0 0 0 0 0 2 0 0 0 0 1 1 0 1 0 1 2 0 0 0 0 0 8 0 951.50255 Q9H8H0 Q9H8H0 294 301 NOL11 Nucleolar protein 11 yes yes 2 0.0011593 116.37 1 1 0.7748 1.0491 22.797 2 Median 0.99745 1.2326 NaN 1 0 Median 0.60185 0.89294 NaN 1 0 Median 48911000 25188000 23724000 38114000 18460000 19654000 10798000 6728000 4069700 3843 1743 3939 13759;13760 20781;20782 20781 2 FQVATDALK AQVAHADQQLRDLGKFQVATDALKSREPQA LRDLGKFQVATDALKSREPQAKPQLDLSID K F Q L K S 2 0 0 1 0 1 0 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 9 0 991.53385 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;K4DIE0;Q4LE64;Q14980 Q4LE64 1686 1694 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.0061489 69.598 2 1 0.70634 0.90153 41.315 3 Median 0.78164 0.99799 14.374 2 0 Median 0.32798 0.49877 NaN 1 0 Median 35228000 21008000 14219000 23137000 12809000 10328000 12090000 8199300 3891000 3844 148;1499 3940 13761;13762;13763 20783;20784;20785 20784 3 FQYCVAVGAQTFPSVSAPSK EFRLLSKEGPAHEPKFQYCVAVGAQTFPSV AVGAQTFPSVSAPSKKVAKQMAAEEAMKAL K F Q S K K 3 0 0 0 1 2 0 1 0 0 0 1 0 2 2 3 1 0 1 3 0 0 20 0 2143.0408 Q59EC0;D3DV75;H0YCK3;A0A024DAK3;P55265;B7Z8Y3 Q59EC0 664 683 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 5.1184E-05 100.68 3 0.53114 0.68138 5.6176 2 Median 0.53114 0.68138 5.6176 2 0 Median NaN NaN NaN 0 0 Median 7361200 5172300 2188900 7361200 5172300 2188900 0 0 0 3845 1552 3941 13764;13765;13766 20786;20787;20788;20789;20790;20791 20786 6 FRCEDGETFSK GRCCTPQLTRTVKMRFRCEDGETFSKNVMM VKMRFRCEDGETFSKNVMMIQSCKCNYNCP R F R S K N 0 1 0 1 1 0 2 1 0 0 0 1 0 2 0 1 1 0 0 0 0 0 11 1 1374.5874 Q6FI18;O00622;B4DI61;Q53FA4 Q6FI18 335 345 CYR61 Protein CYR61 yes no 2;3 4.0613E-13 183.85 5 1.823 2.4042 7.157 4 Median 1.823 2.4042 7.157 4 0 Median NaN NaN NaN 0 0 Median 31931000 10434000 21497000 31931000 10434000 21497000 0 0 0 3846 1168 3942 13767;13768;13769;13770;13771 20792;20793;20794;20795;20796;20797;20798;20799 20793 8 FRCPEALFQPSFLGMESCGIHETTFNSIMK YELPDGQVITIGNERFRCPEALFQPSFLGM ESCGIHETTFNSIMKCDVDIRKDLYANTVL R F R M K C 1 1 1 0 2 1 3 2 1 2 2 1 2 4 2 3 2 0 0 0 0 0 30 1 3533.624 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;Q96DE1;Q96FU6;A4UCT3;F1BXA6;A5GZ75;P63261;B4E3A4;B4DVQ0;V9HVZ7 Q53GK6 255 284 PS1TP5BP1;ACTB;ACTG1;HEL-176 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 4 1.3452E-05 69.766 2 0.77815 1.0489 NaN 1 Median 0.77815 1.0489 NaN 1 0 Median NaN NaN NaN 0 0 Median 12014000 8361800 3652600 12014000 8361800 3652600 0 0 0 3847 1388;1420;1859 3943 13772;13773 20800;20801 20800 601;602 2 FREDHPDLIQNAK DFQREKQEFERNLARFREDHPDLIQNAKKS ARFREDHPDLIQNAKKSDIPEKPKTPQQLW R F R A K K 1 1 1 2 0 1 1 0 1 1 1 1 0 1 1 0 0 0 0 0 0 0 13 1 1581.79 E9PKP7;P17480;A8K962;B4DNQ1;O00164;Q05BZ1 E9PKP7 179 191 UBTF Nucleolar transcription factor 1 yes no 2;3 1.3035E-19 169.65 8 2 0.77464 1.1062 12.361 8 Median 0.8305 1.1088 14.279 6 0 Median 0.68917 1.0857 4.7335 2 0 Median 501940000 287280000 214660000 477090000 273400000 203690000 24852000 13885000 10968000 3848 1039 3944 13774;13775;13776;13777;13778;13779;13780;13781;13782;13783 20802;20803;20804;20805;20806;20807;20808;20809;20810;20811;20812;20813;20814;20815;20816 20803 15 FRELAEEAAR TSEKSKQRLEAEAGRFRELAEEAARLRALA AEAGRFRELAEEAARLRALAEEAKRQRQLA R F R A R L 3 2 0 0 0 0 3 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 10 1 1190.6044 Q15149 Q15149 1933 1942 PLEC Plectin yes yes 3 0.0013782 56.359 1 0.86888 1.1796 NaN 1 Median 0.86888 1.1796 NaN 1 0 Median NaN NaN NaN 0 0 Median 50193000 30568000 19625000 50193000 30568000 19625000 0 0 0 3849 1507 3945 13784 20817;20818 20818 2 FRENLIYTYIGPVLVSVNPYR NFTSEAAFIENLRRRFRENLIYTYIGPVLV YTYIGPVLVSVNPYRDLQIYSRQHMERYRG R F R Y R D 0 2 2 0 0 0 1 1 0 2 2 0 0 1 2 1 1 0 3 3 0 0 21 1 2512.3478 F5H6E2;B7Z3E5;O00159;B7Z9C0;I3L204;I3L4D4;I3L501;I3L3Y6;I3L168;I3L3F5 F5H6E2 47 67 MYO1C Unconventional myosin-Ic yes no 3 7.597E-06 90.308 3 0.82733 1.1327 20.352 2 Median 0.82733 1.1327 20.352 2 0 Median NaN NaN NaN 0 0 Median 38654000 21921000 16733000 38654000 21921000 16733000 0 0 0 3850 905 3946 13785;13786;13787 20819;20820;20821;20822;20823;20824 20821 6 FRISLGLPVGAVINCADNTGAK ______________________________ PVGAVINCADNTGAKNLYIISVKGIKGRLN K F R A K N 3 1 2 1 1 0 0 3 0 2 2 1 0 1 1 1 1 0 0 2 0 0 22 1 2272.1998 Q9BTQ7;A0A024R1Q8;P62829;J3KT29;C9JD32;B9ZVP7 Q9BTQ7 8 29 RPL23 60S ribosomal protein L23 yes no 3 3.9184E-08 83.871 5 0.98994 1.2969 3.2702 4 Median 0.98994 1.2969 3.2702 4 0 Median NaN NaN NaN 0 0 Median 89352000 44039000 45313000 89352000 44039000 45313000 0 0 0 3851 63 3947 13788;13789;13790;13791;13792 20825;20826;20827;20828;20829;20830;20831;20832 20829 8 FRPAGAAPRPPPK NRSREARKDRTPPPRFRPAGAAPRPPPKPM PRFRPAGAAPRPPPKPM_____________ R F R P K P 3 2 0 0 0 0 0 1 0 0 0 1 0 1 5 0 0 0 0 0 0 0 13 2 1360.7728 A0A024RB14;P62854;Q5JNZ5 A0A024RB14 101 113 RPS26;RPS26P11 40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1 yes no 3;4 0.00011554 92.112 8 2 0.74485 0.96543 16.566 10 Median 0.8004 1.0207 14.561 8 0 Median 0.47168 0.79002 0.48693 2 0 Median 844490000 464730000 379760000 810320000 442360000 367960000 34168000 22366000 11802000 3852 255 3948 13793;13794;13795;13796;13797;13798;13799;13800;13801;13802 20833;20834;20835;20836;20837;20838;20839;20840;20841;20842;20843;20844;20845 20842 13 FRPAGAAPRPPPKPM NRSREARKDRTPPPRFRPAGAAPRPPPKPM FRPAGAAPRPPPKPM_______________ R F R P M - 3 2 0 0 0 0 0 1 0 0 0 1 1 1 6 0 0 0 0 0 0 0 15 3 1588.866 A0A024RB14;P62854;Q5JNZ5 A0A024RB14 101 115 RPS26;RPS26P11 40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1 yes no 3;4 6.9342E-08 89.663 7 1 0.93987 1.1503 18.839 8 Median 0.96625 1.1993 15.435 7 0 Median 0.45286 0.846 NaN 1 0 Median 498960000 264520000 234440000 373270000 179630000 193640000 125690000 84890000 40803000 3853 255 3949;3950 13803;13804;13805;13806;13807;13808;13809;13810 20846;20847;20848;20849;20850;20851;20852;20853;20854 20849 104 9 FRPLHVR RVVPGIVYLGHIPPRFRPLHVRNLLSAYGE YLGHIPPRFRPLHVRNLLSAYGEVGRVFFQ R F R V R N 0 2 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 1 0 0 7 1 923.54535 A0A024R029;Q9ULW3 A0A024R029 57 63 ABT1 Activator of basal transcription 1 yes no 3 0.033897 56.122 2 1.1373 1.4943 29.603 2 Median 1.1373 1.4943 29.603 2 0 Median NaN NaN NaN 0 0 Median 8765100 3944100 4821000 8765100 3944100 4821000 0 0 0 3854 27 3951 13811;13812 20855;20856 20855 2 FRQDWGPITSISFR QVIIHNIKFNETLMKFRQDWGPITSISFRT KFRQDWGPITSISFRTDGHPVMAAGSPCGH K F R F R T 0 2 0 1 0 1 0 1 0 2 0 0 0 2 1 2 1 1 0 0 0 0 14 1 1708.8685 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 229 242 WDR36 WD repeat-containing protein 36 yes no 3 0.00083003 40.187 2 0.73552 1.0163 8.8635 2 Median NaN NaN NaN 0 0 Median 0.73552 1.0163 8.8635 2 0 Median 15082000 8575900 6506400 0 0 0 15082000 8575900 6506400 3855 404 3952 13813;13814 20857;20858;20859;20860 20857 4 FSALQQAVPTESTDNRR AASEAARPATSTLNRFSALQQAVPTESTDN ALQQAVPTESTDNRRVVQRSSLSRERGEKA R F S R R V 2 2 1 1 0 2 1 0 0 0 1 0 0 1 1 2 2 0 0 1 0 0 17 1 1918.9497 E7EX73;B4DSI9;E9PGM1;E7EUU4;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637;Q96I65;H7C044 E7EX73 960 976 EIF4G1;EIF4G1 variant protein Eukaryotic translation initiation factor 4 gamma 1 yes no 3 4.0667E-07 83.106 4 1 0.48453 0.66872 134.98 4 Median 0.43608 0.59654 37.597 3 0 Median 5.4873 7.5357 NaN 1 0 Median 27772000 17954000 9818700 21366000 16320000 5046100 6406600 1634000 4772600 3856 747 3953 13815;13816;13817;13818;13819 20861;20862;20863;20864;20865 20864 4 FSASGELGNGNIK IGDAVVISCAKDGVKFSASGELGNGNIKLS VKFSASGELGNGNIKLSQTSNVDKEEEAVT K F S I K L 1 0 2 0 0 0 1 3 0 1 1 1 0 1 0 2 0 0 0 0 0 0 13 0 1292.6361 Q6FI35;Q6FHF5;P12004 Q6FI35 169 181 PCNA Proliferating cell nuclear antigen yes no 2 0.00049806 66.19 1 0.52069 0.66715 NaN 1 Median 0.52069 0.66715 NaN 1 0 Median NaN NaN NaN 0 0 Median 5175000 3334800 1840200 5175000 3334800 1840200 0 0 0 3857 1259 3954 13820 20866 20866 1 FSAVQDISSHSHNK MKSNYYSFIKQNNPKFSAVQDISSHSHNKQ KFSAVQDISSHSHNKQPKRRPILSATVTKR K F S N K Q 1 0 1 1 0 1 0 0 2 1 0 1 0 1 0 4 0 0 0 1 0 0 14 0 1555.7379 Q8IZT6;B3KWI2 Q8IZT6 472 485 ASPM Abnormal spindle-like microcephaly-associated protein yes no 3 0.0040189 67.118 2 1.063 1.3643 3.8449 2 Median 1.063 1.3643 3.8449 2 0 Median NaN NaN NaN 0 0 Median 17824000 9491800 8331900 17824000 9491800 8331900 0 0 0 3858 1631 3955 13821;13822 20867;20868 20867 2 FSCNQPQCPAVFYTFNK IEEPKVLSEAGSAARFSCNQPQCPAVFYTF CNQPQCPAVFYTFNKLKHHLMEQHNIEGEI R F S N K L 1 0 2 0 2 2 0 0 0 0 0 1 0 3 2 1 1 0 1 1 0 0 17 0 2106.9292 Q13129;Q59GL0 Q13129 1407 1423 RLF Zinc finger protein Rlf yes no 2 0.031399 53.377 1 1.2083 1.5078 NaN 1 Median 1.2083 1.5078 NaN 1 0 Median NaN NaN NaN 0 0 Median 976500 548280 428230 976500 548280 428230 0 0 0 3859 1463 3956 13823 20869 20869 1 FSDFLLDPYK VVEDELVKKYSLPSKFSDFLLDPYKYMTLN SLPSKFSDFLLDPYKYMTLNPSTKRKNTGS K F S Y K Y 0 0 0 2 0 0 0 0 0 0 2 1 0 2 1 1 0 0 1 0 0 0 10 0 1243.6125 Q9UIG0 Q9UIG0 288 297 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 1.4086E-07 150.27 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 146140000 0 146140000 115260000 0 115260000 30886000 0 30886000 3860 1786 3957 13824;13825;13826;13827;13828 20870;20871;20872;20873;20874;20875 20872 6 FSDFPLSK LMQNYEKINVNEITRFSDFPLSKKTLKGLQ NVNEITRFSDFPLSKKTLKGLQEAQYRLVT R F S S K K 0 0 0 1 0 0 0 0 0 0 1 1 0 2 1 2 0 0 0 0 0 0 8 0 939.47018 Q13206;Q86VR6;E9PIF2;Q59EC7;B4DKX3 Q13206 71 78 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 2 0.022809 56.721 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3699100 0 3699100 3699100 0 3699100 0 0 0 3861 1466 3958 13829 20876 20876 1 FSDLFSLAEEYEDSSTKPPK LQHVQASCDEAHKMKFSDLFSLAEEYEDSS SLAEEYEDSSTKPPKSRRKAALSSPRSRKN K F S P K S 1 0 0 2 0 0 3 0 0 0 2 2 0 2 2 4 1 0 1 0 0 0 20 1 2289.0689 Q68E01 Q68E01 967 986 INTS3 Integrator complex subunit 3 yes yes 3 0.00017202 106.44 2 0.45662 0.56925 NaN 1 Median 0.45662 0.56925 NaN 1 0 Median NaN NaN NaN 0 0 Median 5065500 4315800 749640 5065500 4315800 749640 0 0 0 3862 1584 3959 13830;13831 20877;20878;20879;20880 20877 4 FSDSYASVIK LLETCSIALVGKYTKFSDSYASVIKALEHS GKYTKFSDSYASVIKALEHSALAINHKLEI K F S I K A 1 0 0 1 0 0 0 0 0 1 0 1 0 1 0 3 0 0 1 1 0 0 10 0 1115.5499 P17812;B4E1E0;B4DMB5 P17812 310 319 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.018888 46.335 1 0.41721 0.51389 NaN 1 Median 0.41721 0.51389 NaN 1 0 Median NaN NaN NaN 0 0 Median 18161000 11667000 6493600 18161000 11667000 6493600 0 0 0 3863 1278 3960 13832 20881 20881 1 FSEGEATLR MEESLLLFEAMRKGKFSEGEATLRMKLVME AMRKGKFSEGEATLRMKLVMEDGKMDPVAY K F S L R M 1 1 0 0 0 0 2 1 0 0 1 0 0 1 0 1 1 0 0 0 0 0 9 0 1008.4876 B4DNN3;Q53HS0;A8K3A8;P47897;Q9H3A5;Q9BUZ3;B4DDN1;Q96AW5;A0A1B0GVU9;A0A1B0GTT3;A0A0U1RQQ5 B4DNN3 345 353 QARS Glutamine--tRNA ligase yes no 2 0.011222 61.679 2 1.9846 2.5228 NaN 1 Median NaN NaN NaN 0 0 Median 1.9846 2.5228 NaN 1 0 Median 6666200 1763900 4902300 0 0 0 6666200 1763900 4902300 3864 591 3961 13833;13834 20882;20883 20882 2 FSEGNILELLHR VKQAMQKHLLQGWLRFSEGNILELLHRLDV WLRFSEGNILELLHRLDVENSSEVAVSVLN R F S H R L 0 1 1 0 0 0 2 1 1 1 3 0 0 1 0 1 0 0 0 0 0 0 12 0 1426.7569 Q9BPX3;Q6NUR1 Q9BPX3 276 287 NCAPG Condensin complex subunit 3 yes no 2;3 1.0595E-05 91.093 3 3 0.63527 0.88497 8.9675 6 Median 0.65265 0.87715 5.8431 3 0 Median 0.56864 0.89286 12.919 3 0 Median 137210000 84330000 52885000 62748000 37069000 25679000 74467000 47261000 27206000 3865 1706 3962 13835;13836;13837;13838;13839;13840 20884;20885;20886;20887;20888;20889;20890;20891;20892 20889 9 FSEIPQR CDKYLQQIFESQRMKFSEIPQRLHALLMPP IFESQRMKFSEIPQRLHALLMPPEPIIINH K F S Q R L 0 1 0 0 0 1 1 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 7 0 875.45012 A0A024R137;A0A024R102;Q96GM5;F8VUB0;A8K9I5;F8VRQ4;B3KXL9;A0A090N8Z9;Q6STE5 A0A024R137 478 484 SMARCD1;SMARCD3 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 yes no 2 0.016534 92.191 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4780400 4780400 0 4780400 4780400 0 0 0 0 3866 47 3963 13841;13842 20893;20894 20894 2 FSFTLPYPVK VSVIQSIPIFNETGRFSFTLPYPVKIKVRF NETGRFSFTLPYPVKIKVRFSFFLQIYLIM R F S V K I 0 0 0 0 0 0 0 0 0 0 1 1 0 2 2 1 1 0 1 1 0 0 10 0 1197.6434 Q9P035;H3BS72;H3BRL8;H3BPZ1 Q9P035 310 319 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes no 2 0.006663 99.139 4 0.49273 0.63765 NaN 1 Median 0.49273 0.63765 NaN 1 0 Median NaN NaN NaN 0 0 Median 5067500 1618600 3448800 5067500 1618600 3448800 0 0 0 3867 1775 3964 13843;13844;13845;13846 20895;20896;20897;20898 20897 4 FSGEEGEIEDDESGTENREEK MFRKSSTSPKWAHDKFSGEEGEIEDDESGT EIEDDESGTENREEKDNIQPTTE_______ K F S E K D 0 1 1 2 0 0 8 3 0 1 0 1 0 1 0 2 1 0 0 0 0 0 21 1 2384.9728 Q9Y2W1 Q9Y2W1 927 947 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 3 2.1865E-32 164.58 3 2 0.58338 0.79236 12.631 5 Median 0.60197 0.76354 2.1595 3 0 Plateau 0.61983 0.96018 7.9701 2 0 Median 55109000 33319000 21790000 34148000 20810000 13338000 20961000 12509000 8452100 3868 1809 3965 13847;13848;13849;13850;13851 20899;20900;20901;20902;20903;20904;20905;20906;20907;20908 20902 10 FSGQIER LYDCRSPDESHRMWRFSGQIERVTWNHFSP DESHRMWRFSGQIERVTWNHFSPCHFLAST R F S E R V 0 1 0 0 0 1 1 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 7 0 835.41882 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DNL1;B4DJV5 Q9BV37 341 347 PWP1 Periodic tryptophan protein 1 homolog yes no 2 0.031071 58.917 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4474200 0 4474200 0 0 0 4474200 0 4474200 3869 273 3966 13852 20909 20909 1 FSGVNEQPPVVLAVK EVVNSITGERLSAYRFSGVNEQPPVVLAVK FSGVNEQPPVVLAVKEFSWQKRTGLLIGLE R F S V K E 1 0 1 0 0 1 1 1 0 0 1 1 0 1 2 1 0 0 0 4 0 0 15 0 1582.8719 Q8WYP5;Q96M44 Q8WYP5 70 84 AHCTF1 Protein ELYS yes no 2 3.556E-18 159.44 5 2 0.81466 1.0038 16.396 6 Median 0.82285 1.0295 6.1425 4 0 Median 0.51267 0.78185 10.78 2 0 Median 170150000 99276000 70873000 125510000 69724000 55785000 44639000 29552000 15088000 3870 1670 3967 13853;13854;13855;13856;13857;13858;13859 20910;20911;20912;20913;20914;20915;20916;20917;20918;20919;20920 20914 11 FSIAPSSLDPSNR IPARLPITCLTIPPRFSIAPSSLDPSNRKP PRFSIAPSSLDPSNRKPLTVLNKGLENPLP R F S N R K 1 1 1 1 0 0 0 0 0 1 1 0 0 1 2 4 0 0 0 0 0 0 13 0 1389.6888 B2R841;P53350;B4E083;Q59GD0;D3DWF3;I3L2H5 B2R841 325 337 PLK1 Serine/threonine-protein kinase PLK;Serine/threonine-protein kinase PLK1 yes no 2 7.3535E-06 108.31 4 0.7674 1.0278 10.168 4 Median 0.7674 1.0278 10.168 4 0 Median NaN NaN NaN 0 0 Median 45095000 24643000 20452000 45095000 24643000 20452000 0 0 0 3871 714 3968 13860;13861;13862;13863 20921;20922;20923;20924;20925;20926;20927 20926 7 FSIAPSSLDPSNRK IPARLPITCLTIPPRFSIAPSSLDPSNRKP RFSIAPSSLDPSNRKPLTVLNKGLENPLPE R F S R K P 1 1 1 1 0 0 0 0 0 1 1 1 0 1 2 4 0 0 0 0 0 0 14 1 1517.7838 B2R841;P53350;B4E083;Q59GD0;D3DWF3;I3L2H5 B2R841 325 338 PLK1 Serine/threonine-protein kinase PLK;Serine/threonine-protein kinase PLK1 yes no 3 0.050339 49.149 1 0.79797 1.0871 NaN 1 Median 0.79797 1.0871 NaN 1 0 Median NaN NaN NaN 0 0 Median 3030000 1601500 1428500 3030000 1601500 1428500 0 0 0 3872 714 3969 13864 20928 20928 1 FSISAHGK RQAMLENASDIKLEKFSISAHGKELFVNAD SDIKLEKFSISAHGKELFVNADLYIVAGRR K F S G K E 1 0 0 0 0 0 0 1 1 1 0 1 0 1 0 2 0 0 0 0 0 0 8 0 845.43955 Q8NE71;Q2L6I2;Q59F96;H0YGW7;B4DNU2;Q5STZ8 Q8NE71 309 316 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 0.0078785 79.451 1 0.60992 0.75812 NaN 1 Median 0.60992 0.75812 NaN 1 0 Median NaN NaN NaN 0 0 Median 16732000 10652000 6080100 16732000 10652000 6080100 0 0 0 3873 1653 3970 13865 20929 20929 1 FSLCILTPEK QCTDVVDGEGRTGQKFSLCILTPEKEHFIR RTGQKFSLCILTPEKEHFIRAETKEIVSGW K F S E K E 0 0 0 0 1 0 1 0 0 1 2 1 0 1 1 1 1 0 0 0 0 0 10 0 1206.6318 B9EGI2;U6FSN9;Q6WCQ1;J3KSK7 B9EGI2 117 126 MPRIP;Mprip-Ntrk1 fusion gene Tyrosine-protein kinase receptor;Myosin phosphatase Rho-interacting protein yes no 2 0.01412 81.338 1 1.2185 1.6074 NaN 1 Median 1.2185 1.6074 NaN 1 0 Median NaN NaN NaN 0 0 Median 2394200 1220600 1173600 2394200 1220600 1173600 0 0 0 3874 928 3971 13866 20930 20930 1 FSLDFNLR IACPHKCTFEGCGKRFSLDFNLRTHVRIHT FEGCGKRFSLDFNLRTHVRIHTGDRPYVCP R F S L R T 0 1 1 1 0 0 0 0 0 0 2 0 0 2 0 1 0 0 0 0 0 0 8 0 1010.5185 H0YJV7;P25490;Q96MM3;O15391 H0YJV7 140 147 YY1;ZFP42;YY2 Transcriptional repressor protein YY1;Zinc finger protein 42 homolog;Transcription factor YY2 yes no 2 0.026972 53.166 1 0.58618 0.80679 NaN 1 Median 0.58618 0.80679 NaN 1 0 Median NaN NaN NaN 0 0 Median 4699000 2978000 1721100 4699000 2978000 1721100 0 0 0 3875 1102 3972 13867 20931;20932 20931 2 FSLENNFLLQHNIR RFHDLLSQLDDQYSRFSLENNFLLQHNIRK RFSLENNFLLQHNIRKSKRNLQDNFQEDPI R F S I R K 0 1 3 0 0 1 1 0 1 1 3 0 0 2 0 1 0 0 0 0 0 0 14 0 1743.9057 E7EPD2;D2KFR9;J3KPM9;P42224;E7ENM1 E7EPD2 71 84 STAT1 Signal transducer and activator of transcription;Signal transducer and activator of transcription 1-alpha/beta yes no 3 0.001191 80.469 2 0.38636 0.5331 14.119 2 Median 0.38636 0.5331 14.119 2 0 Median NaN NaN NaN 0 0 Median 6256600 4244100 2012500 6256600 4244100 2012500 0 0 0 3876 977 3973 13868;13869 20933;20934 20933 2 FSLIDLAGNER VFQIILRRKGKLHGKFSLIDLAGNERGADT LHGKFSLIDLAGNERGADTSSADRQTRLEG K F S E R G 1 1 1 1 0 0 1 1 0 1 2 0 0 1 0 1 0 0 0 0 0 0 11 0 1233.6354 B0AZS5;O00139;B4DM85 B0AZS5 407 417 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A no no 2 1.9091E-05 96.89 2 1 0.86055 1.152 NaN 1 Median 0.86055 1.152 NaN 1 0 Median NaN NaN NaN 0 0 Median 31278000 22117000 9160600 24460000 15300000 9160600 6817400 6817400 0 3877 664;1163 3974 13870;13871;13872 20935;20936;20937;20938 20936 4 FSLVDLAGNER CFQIILRAKGRMHGKFSLVDLAGNERGADT MHGKFSLVDLAGNERGADTSSADRQTRMEG K F S E R G 1 1 1 1 0 0 1 1 0 0 2 0 0 1 0 1 0 0 0 1 0 0 11 0 1219.6197 A8K3S3;A0A140VKF1;Q99661;B7Z7M6;B7Z6Q6;Q8N5N1;B4DY48;A0A140VKG5;Q8N4N8 A8K3S3 488 498 KIF2C;KIF2B Kinesin-like protein;Kinesin-like protein KIF2C;Kinesin-like protein KIF2B yes no 2 0.00016843 100.48 1 2 0.89134 1.3844 22.117 3 Median 0.72515 0.96824 NaN 1 0 Median 0.91524 1.4172 3.3073 2 0 Median 74060000 39004000 35056000 23810000 11854000 11956000 50250000 27150000 23100000 3878 514 3975 13873;13874;13875 20939;20940;20941;20942;20943 20941 5 FSNLLGTVYR ______________________________ KFAYRFSNLLGTVYRRGNLNFTCDGNSVIS R F S Y R R 0 1 1 0 0 0 0 1 0 0 2 0 0 1 0 1 1 0 1 1 0 0 10 0 1168.6241 Q15269;A0A0B4J2E5;C9J544 Q15269 7 16 PWP2 Periodic tryptophan protein 2 homolog yes no 2 2.476E-16 153.05 3 2 0.83046 1.1246 3.1205 4 Median 0.84637 1.1502 2.7491 3 0 Median 0.67929 1.0867 NaN 1 0 Median 129910000 62322000 67584000 77180000 41379000 35800000 52726000 20942000 31784000 3879 1508 3976 13876;13877;13878;13879;13880 20944;20945;20946;20947;20948;20949;20950 20950 7 FSNSSSSNEFSK QSCSNGQHEYGSCGRFSNSSSSNEFSKCDQ CGRFSNSSSSNEFSKCDQYGSGSSQSTSFE R F S S K C 0 0 2 0 0 0 1 0 0 0 0 1 0 2 0 6 0 0 0 0 0 0 12 0 1319.563 CON__Q5D862;Q5D862 CON__Q5D862 404 415 FLG2 Filaggrin-2 yes no 2 0.0019337 94.616 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1660200 1660200 0 1660200 1660200 0 0 0 0 + 3880 971 3977 13881;13882 20951;20952 20952 2 FSNTLELK AKRYEEKTQKQLPLKFSNTLELKLKKENWG QKQLPLKFSNTLELKLKKENWGPWSAGGSR K F S L K L 0 0 1 0 0 0 1 0 0 0 2 1 0 1 0 1 1 0 0 0 0 0 8 0 950.5073 Q4KMR3;Q12965 Q4KMR3 873 880 MYO1E Unconventional myosin-Ie yes no 2 0.0028309 113.41 4 0.53047 0.66403 7.7789 4 Median 0.53047 0.66403 7.7789 4 0 Median NaN NaN NaN 0 0 Median 61655000 39793000 21862000 61655000 39793000 21862000 0 0 0 3881 1459 3978 13883;13884;13885;13886 20953;20954;20955;20956;20957;20958 20955 6 FSPAGPILSIR ______________________________ LYEKFSPAGPILSIRVCRDMITRRSLGYAY K F S I R V 1 1 0 0 0 0 0 1 0 2 1 0 0 1 2 2 0 0 0 0 0 0 11 0 1156.6604 A0A087WTT1;A0A024R9C1;P11940;A0A024R9E2;E7ERJ7;B4DQX0;B3KT93;H0YBN4;Q2VIP3;Q5VX58;Q3ZCS4;Q9H361;E5RJB9;E5RH24;Q4VXU2;E5RHG7;E5RGC4;E5RFD8 A0A087WTT1 6 16 PABPC1;PABPC3;PABPC1L Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like no no 2 0.015098 71.221 2 1 0.7591 0.99599 143.6 2 Median 0.27058 0.3608 NaN 1 0 Median 2.1296 2.7494 NaN 1 0 Median 31657000 24165000 7491200 26621000 22391000 4229800 5035900 1774500 3261400 3882 217 3979 13887;13888;13889 20959;20960;20961 20960 3 FSPAGPVLSIR GDLHSDVTEAMLYEKFSPAGPVLSIRVCRD LYEKFSPAGPVLSIRVCRDMITRRSLGYAY K F S I R V 1 1 0 0 0 0 0 1 0 1 1 0 0 1 2 2 0 0 0 1 0 0 11 0 1142.6448 B1ANR0;Q6IQ30;Q13310;B1ANR1 B1ANR0 31 41 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 yes no 2 0.0026704 58.699 2 0.22939 0.30472 8.1147 2 Median 0.22939 0.30472 8.1147 2 0 Median NaN NaN NaN 0 0 Median 36673000 29302000 7370700 36673000 29302000 7370700 0 0 0 3883 676 3980 13890;13891 20962;20963;20964 20963 3 FSPDGELYASGSEDGTLR LESYKGHFGPIHCVRFSPDGELYASGSEDG DGELYASGSEDGTLRLWQTVVGKTYGLWKC R F S L R L 1 1 0 2 0 0 2 3 0 0 2 0 0 1 1 3 1 0 1 0 0 0 18 0 1899.8487 Q9Y3F4;B0AZV0;H0YH33 Q9Y3F4 273 290 STRAP Serine-threonine kinase receptor-associated protein yes no 2 2.7499E-19 151.54 4 2 0.46607 0.6266 115.13 6 Median 0.44723 0.6161 1.6413 4 0 Median 4.0574 5.7483 1.4191 2 0 Median 52841000 28790000 24051000 34470000 24661000 9808700 18371000 4128900 14242000 3884 1818 3981 13892;13893;13894;13895;13896;13897 20965;20966;20967;20968;20969;20970;20971;20972;20973 20966 9 FSPIPFPPLSYK VAVYTTTVHWLESRRFSPIPFPPLSYKHDT SRRFSPIPFPPLSYKHDTKLLILALERLKE R F S Y K H 0 0 0 0 0 0 0 0 0 1 1 1 0 2 4 2 0 0 1 0 0 0 12 0 1391.7489 Q6P2Q9;I3L0J9 Q6P2Q9 822 833 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0038517 53.327 1 0.53421 0.67668 NaN 1 Median 0.53421 0.67668 NaN 1 0 Median NaN NaN NaN 0 0 Median 6425000 3991400 2433700 6425000 3991400 2433700 0 0 0 3885 1592 3982 13898 20974;20975 20975 2 FSPTDFLAK HYNALLKVYLQNEYKFSPTDFLAKMEEANI LQNEYKFSPTDFLAKMEEANIQPNRVTYQR K F S A K M 1 0 0 1 0 0 0 0 0 0 1 1 0 2 1 1 1 0 0 0 0 0 9 0 1024.5229 E5KNY5;P42704;B4DSR0;B8ZZ38;A0A0C4DG06;C9JCA9 E5KNY5 179 187 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.0047861 74.301 1 0.32578 0.41315 NaN 1 Median 0.32578 0.41315 NaN 1 0 Median NaN NaN NaN 0 0 Median 10351000 7396700 2953900 10351000 7396700 2953900 0 0 0 3886 1001 3983 13899 20976 20976 1 FSQELLSNGELNHLPLK FQGEPKKPPMNGYQKFSQELLSNGELNHLP QELLSNGELNHLPLKERMVEIGSRWQRISQ K F S L K E 0 0 2 0 0 1 2 1 1 0 5 1 0 1 1 2 0 0 0 0 0 0 17 0 1938.0211 E9PKP7;P17480;A8K962;B4DNQ1;O00164;B4DLB0;E9PLT2 E9PKP7 541 557 UBTF Nucleolar transcription factor 1 yes no 2;3 5.4712E-06 105.39 3 2 0.66145 1.0329 23.107 5 Median 0.73241 0.95085 32.625 3 0 Median 0.64859 1.037 0.55718 2 0 Median 173790000 100570000 73218000 47404000 24983000 22422000 126390000 75591000 50796000 3887 1039 3984 13900;13901;13902;13903;13904 20977;20978;20979;20980;20981;20982;20983;20984;20985;20986 20983 10 FSQLAEAYEVLSDEVK YHPDTNKDDPKAKEKFSQLAEAYEVLSDEV SQLAEAYEVLSDEVKRKQYDAYGSAGFDPG K F S V K R 2 0 0 1 0 1 3 0 0 0 2 1 0 1 0 2 0 0 1 2 0 0 16 0 1826.8938 B3KM81;Q59E88;Q53G26;Q96EY1 B3KM81 135 150 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes no 2 1.9637E-13 147.7 1 2 0.64955 0.85192 20.697 3 Median 0.64955 0.83166 NaN 1 0 Median 0.6506 1.0127 24.454 2 0 Median 56617000 32307000 24310000 8876200 5468900 3407200 47741000 26838000 20903000 3888 753 3985 13905;13906;13907 20987;20988;20989;20990 20987 4 FSREEFPTLQAAGDQDK GAHGDGGRASSLLSRFSREEFPTLQAAGDQ REEFPTLQAAGDQDKAAKERESAEQSSGPG R F S D K A 2 1 0 2 0 2 2 1 0 0 1 1 0 2 1 1 1 0 0 0 0 0 17 1 1937.9119 P48634;B4DZ56 P48634 165 181 PRRC2A Protein PRRC2A yes no 3 2.483E-05 55.33 1 1.2722 1.6064 NaN 1 Median 1.2722 1.6064 NaN 1 0 Median NaN NaN NaN 0 0 Median 6500900 3225500 3275400 6500900 3225500 3275400 0 0 0 3889 1348 3986 13908 20991 20991 0 FSSCGGGGGSFGAGGGFGSR TTSSSTRRSGGGGGRFSSCGGGGGSFGAGG GGGGSFGAGGGFGSRSLVNLGGSKSISISV R F S S R S 1 1 0 0 1 0 0 10 0 0 0 0 0 3 0 4 0 0 0 0 0 0 20 0 1764.7274 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRG2 H6VRG3 46 65 KRT1 Keratin, type II cytoskeletal 1 no no 2 1.1355E-37 172.09 4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1046600000 1046600000 0 555200000 555200000 0 491400000 491400000 0 + 3890 1113;1114 3987 13909;13910;13911;13912;13913;13914 20992;20993;20994;20995;20996;20997;20998;20999 20995 8 FSSELEQIELHNSIR SKKDACELIERYLNRFSSELEQIELHNSIR FSSELEQIELHNSIRDRQGRRHCSRETVIK R F S I R D 0 1 1 0 0 1 3 0 1 2 2 0 0 1 0 3 0 0 0 0 0 0 15 0 1800.9006 D6RA57;H0Y9X1;Q96EY4;B7Z504 D6RA57 85 99 TMA16 Translation machinery-associated protein 16 yes no 3 2.7895E-05 67.102 1 2 0.35452 0.51287 49.68 3 Median 0.84574 1.1969 NaN 1 0 Median 0.34634 0.5064 1.7949 2 0 Median 29411000 21425000 7986400 2778200 1303900 1474300 26633000 20121000 6512000 3891 989 3988 13915;13916;13917 21000;21001;21002;21003;21004 21003 5 FSSITAHPER REGLPEDGTLYRINRFSSITAHPERWDVSF YRINRFSSITAHPERWDVSFFTGGPLWALD R F S E R W 1 1 0 0 0 0 1 0 1 1 0 0 0 1 1 2 1 0 0 0 0 0 10 0 1143.5673 Q8WUA4;Q53QN0;A0A087WZD8 Q8WUA4 377 386 GTF3C2 General transcription factor 3C polypeptide 2 yes no 2;3 0.016695 54.419 2 0.50232 0.69196 NaN 1 Median 0.50232 0.69196 NaN 1 0 Median NaN NaN NaN 0 0 Median 6066000 3565700 2500300 6066000 3565700 2500300 0 0 0 3892 1663 3989 13918;13919 21005;21006 21006 2 FSSPHLLEALK SILAEREEPLRCLIKFSSPHLLEALKSLAP CLIKFSSPHLLEALKSLAPAGIADAPLSPL K F S L K S 1 0 0 0 0 0 1 0 1 0 3 1 0 1 1 2 0 0 0 0 0 0 11 0 1240.6816 Q96H22 Q96H22 297 307 CENPN Centromere protein N yes yes 3 0.017622 33.542 1 0.63672 0.82273 NaN 1 Median 0.63672 0.82273 NaN 1 0 Median NaN NaN NaN 0 0 Median 5900600 3322500 2578200 5900600 3322500 2578200 0 0 0 3893 1687 3990 13920 21007;21008 21008 2 FSSSGDFLVAGVGQEHR LLCDIPLVGFINSLKFSSSGDFLVAGVGQE SSGDFLVAGVGQEHRLGRWWRIKEARNSVC K F S H R L 1 1 0 1 0 1 1 3 1 0 1 0 0 2 0 3 0 0 0 2 0 0 17 0 1791.854 O43818 O43818 429 445 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2;3 1.9567E-10 131.35 7 1 0.86236 1.1795 19.908 6 Median 0.86236 1.1795 19.908 6 0 Median NaN NaN NaN 0 0 Median 278400000 135510000 142890000 252160000 135510000 116650000 26240000 0 26240000 3894 1188 3991 13921;13922;13923;13924;13925;13926;13927;13928 21009;21010;21011;21012;21013;21014;21015;21016;21017;21018;21019 21010 11 FSSYHVK EQLKERFKDKKHLDKFSSYHVKTAFFHVCT KDKKHLDKFSSYHVKTAFFHVCTQNPQDSQ K F S V K T 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 2 0 0 1 1 0 0 7 0 866.42865 Q8N884 Q8N884 433 439 MB21D1 Cyclic GMP-AMP synthase yes yes 2 0.033087 60.358 2 1.0898 1.363 1.576 2 Median 1.0898 1.363 1.576 2 0 Median NaN NaN NaN 0 0 Median 122360000 59901000 62459000 122360000 59901000 62459000 0 0 0 3895 1643 3992 13929;13930 21020;21021 21020 2 FSTPEQAAK GSCSYKDFSESRNNRFSTPEQAAKNRIQHP ESRNNRFSTPEQAAKNRIQHPSNVLHFFNA R F S A K N 2 0 0 0 0 1 1 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 9 0 977.48181 B2R959;Q6NTA2;P14866;M0QXS5;M0QYT0 B2R959 454 462 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 2 0.001668 94.114 2 2 1.0893 1.4713 80.124 4 Median 0.60399 0.73304 3.1996 2 0 Median 1.9647 2.9349 2.3229 2 0 Median 70102000 36667000 33435000 46043000 28745000 17298000 24059000 7922200 16136000 3896 719 3993 13931;13932;13933;13934 21022;21023;21024;21025;21026;21027 21024 6 FSTPILDLFPTK QLHYLRPVVVLERSKFSTPILDLFPTKKTD RSKFSTPILDLFPTKKTDELCVGSS_____ K F S T K K 0 0 0 1 0 0 0 0 0 1 2 1 0 2 2 1 2 0 0 0 0 0 12 0 1377.7544 Q13129;Q59GL0 Q13129 1893 1904 RLF Zinc finger protein Rlf yes no 2 0.001475 93.561 4 0.7241 0.92218 6.8381 4 Median 0.7241 0.92218 6.8381 4 0 Median NaN NaN NaN 0 0 Median 19152000 11559000 7592500 19152000 11559000 7592500 0 0 0 3897 1463 3994 13935;13936;13937;13938 21028;21029;21030;21031;21032;21033;21034 21030 7 FSTSSLLLR FRPKDPYCHPVCANRFSTSSLLLRIRKRTR PVCANRFSTSSLLLRIRKRTRRQKGVLGTE R F S L R I 0 1 0 0 0 0 0 0 0 0 3 0 0 1 0 3 1 0 0 0 0 0 9 0 1022.576 Q5T7U1;Q9Y5Q8;Q5T7U4 Q5T7U1 79 87 GTF3C5 General transcription factor 3C polypeptide 5 yes no 2 0.0089275 65.246 1 0.53628 0.70194 NaN 1 Median 0.53628 0.70194 NaN 1 0 Median NaN NaN NaN 0 0 Median 7314600 5063000 2251600 7314600 5063000 2251600 0 0 0 3898 1572 3995 13939 21035 21035 1 FSVCVLGDQQHCDEAK RFSGTVRLKSTPRPKFSVCVLGDQQHCDEA SVCVLGDQQHCDEAKAVDIPHMDIEALKKL K F S A K A 1 0 0 2 2 2 1 1 1 0 1 1 0 1 0 1 0 0 0 2 0 0 16 0 1891.8193 P62906;Q1JQ76 P62906 63 78 RPL10A 60S ribosomal protein L10a;Ribosomal protein yes no 2;3 1.2187E-129 262.43 10 2 0.7789 0.96911 11.771 12 Median 0.83578 1.1449 8.7418 10 0 Linear 0.50814 0.81226 3.6524 2 0 Median 1824300000 1016100000 808160000 1733700000 955740000 777960000 90602000 60401000 30201000 3899 1415 3996 13940;13941;13942;13943;13944;13945;13946;13947;13948;13949;13950;13951 21036;21037;21038;21039;21040;21041;21042;21043;21044;21045;21046;21047;21048;21049;21050;21051;21052;21053;21054;21055;21056;21057;21058;21059;21060;21061 21047 26 FSVSPVVR TITTFEHAHNMRVMKFSVSPVVRVAVEAKN HNMRVMKFSVSPVVRVAVEAKNPADLPKLV K F S V R V 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 2 0 0 0 3 0 0 8 0 889.50215 P13639;Q8TA90;Q6PK56 P13639 499 506 EEF2 Elongation factor 2 yes no 2 0.029195 82.671 2 1 0.56126 0.75565 0.52753 2 Median 0.56126 0.75565 0.52753 2 0 Median NaN NaN NaN 0 0 Median 34007000 15969000 18038000 26133000 15969000 10164000 7874500 0 7874500 3900 1264 3997 13952;13953;13954 21062;21063;21064;21065 21064 4 FSVVSDK CYPPIIQSGGNYNLKFSVVSDKNHMHFGAI SGGNYNLKFSVVSDKNHMHFGAITCAMGIR K F S D K N 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 2 0 0 0 2 0 0 7 0 780.40177 Q9Y5B9;Q0VGA3 Q9Y5B9 257 263 SUPT16H FACT complex subunit SPT16 yes no 2 0.010112 110.63 4 0.94671 1.2235 51.712 4 Linear 0.94671 1.2235 51.712 4 0 Linear NaN NaN NaN 0 0 Median 297180000 175840000 121340000 297180000 175840000 121340000 0 0 0 3901 1829 3998 13955;13956;13957;13958 21066;21067;21068;21069;21070 21070 5 FTARPLVETIFER DYAFDDSAPNEMVYRFTARPLVETIFERGM YRFTARPLVETIFERGMATCFAYGQTGSGK R F T E R G 1 2 0 0 0 0 2 0 0 1 1 0 0 2 1 0 2 0 0 1 0 0 13 1 1577.8566 B0AZS5;O00139;B4DM85 B0AZS5 246 258 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A no no 3 0.00038218 75.911 3 2 1.0705 1.4808 21.369 5 Median 0.93631 1.3055 17.422 3 0 Median 1.251 1.7391 3.0265 2 0 Median 34909000 16139000 18770000 19937000 10799000 9138800 14971000 5340600 9630800 3902 664;1163 3999 13959;13960;13961;13962;13963 21071;21072;21073;21074;21075;21076;21077;21078 21078 8 FTARPLVQTIFEGGK DFAFDETASNEVVYRFTARPLVQTIFEGGK FTARPLVQTIFEGGKATCFAYGQTGSGKTH R F T G K A 1 1 0 0 0 1 1 2 0 1 1 1 0 2 1 0 2 0 0 1 0 0 15 1 1662.9093 A8K3S3;A0A140VKF1;Q99661;B7Z7M6;B7Z6Q6;Q8N5N1;Q5JR91 A8K3S3 327 341 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 3 0.0011802 80.719 3 2 0.72995 0.98367 33.887 5 Median 0.72487 0.94496 5.202 3 0 Median 1.0441 1.7331 3.5737 2 0 Median 98472000 53581000 44891000 59065000 33392000 25674000 39407000 20189000 19218000 3903 514 4000 13964;13965;13966;13967;13968 21079;21080;21081;21082;21083;21084;21085;21086 21080 8 FTASIQR KLRHSEREMRNTLEKFTASIQRLIEQEEYL EMRNTLEKFTASIQRLIEQEEYLNVQVKEL K F T Q R L 1 1 0 0 0 1 0 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 7 0 821.43955 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 821 827 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.013107 110.34 2 2 0.66155 0.91075 1.6724 2 Median 0.66155 0.91075 1.6724 2 0 Median NaN NaN NaN 0 0 Median 230590000 153390000 77203000 203180000 125970000 77203000 27413000 27413000 0 3904 1760 4001 13969;13970;13971;13972 21087;21088;21089;21090;21091 21090 5 FTCSECASGIHSCFVCK FHLACLGLSRRPEGRFTCSECASGIHSCFV CSECASGIHSCFVCKESKTDVKRCVVTQCG R F T C K E 1 0 0 0 4 0 1 1 1 1 0 1 0 2 0 3 1 0 0 1 0 0 17 0 2048.8213 O96028 O96028 705 721 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 3 1.698E-09 121.82 2 1.0782 1.353 12.127 2 Median 1.0782 1.353 12.127 2 0 Median NaN NaN NaN 0 0 Median 25576000 11676000 13900000 25576000 11676000 13900000 0 0 0 3905 1228 4002 13973;13974 21092;21093;21094;21095 21093 4 FTDADKETEIVK EENFIDANDDEDMEKFTDADKETEIVKKLE MEKFTDADKETEIVKKLETEETVPETDVET K F T V K K 1 0 0 2 0 0 2 0 0 1 0 2 0 1 0 0 2 0 0 1 0 0 12 1 1394.6929 B2R5U7;Q03701 B2R5U7 647 658 CEBPZ CCAAT/enhancer-binding protein zeta no no 2 0.0043904 126.66 2 1 0.67664 0.92048 6.074 2 Median 0.79326 0.96088 NaN 1 0 Median 0.57716 0.88179 NaN 1 0 Median 12711000 7350500 5360300 7480000 3639900 3840100 5230800 3710500 1520200 3906 693;1441 4003 13975;13976;13977 21096;21097;21098 21096 3 FTDDTFDPELAATIGVDFK IIGESGVGKSSLLLRFTDDTFDPELAATIG TFDPELAATIGVDFKVKTISVDGNKAKLAI R F T F K V 2 0 0 4 0 0 1 1 0 1 1 1 0 3 1 0 3 0 0 1 0 0 19 0 2100.9892 Q9BZT2;B7Z4P9;H0Y6T8;Q9NP72 Q9BZT2 28 46 RAB18 Ras-related protein Rab-18 yes no 2 7.3272E-16 138.21 2 0.8778 1.1365 13.879 2 Median 0.8778 1.1365 13.879 2 0 Median NaN NaN NaN 0 0 Median 5952200 3562400 2389800 5952200 3562400 2389800 0 0 0 3907 908 4004 13978;13979 21099;21100;21101 21100 3 FTDDYQLFEELGK ______________________________ TRFTDDYQLFEELGKGAFSVVRRCVKKTST R F T G K G 0 0 0 2 0 1 2 1 0 0 2 1 0 2 0 0 1 0 1 0 0 0 13 0 1603.7406 Q5SWX3;A8K6N9;A0A0A0MS52;A0A0A0MT11;Q13555;B3KY86;B4DVQ3 Q5SWX3 10 22 CAMK2G Calcium/calmodulin-dependent protein kinase type II subunit gamma yes no 2 0.00013665 115.57 2 0.40253 0.51022 NaN 1 Median 0.40253 0.51022 NaN 1 0 Median NaN NaN NaN 0 0 Median 6426600 5600800 825850 6426600 5600800 825850 0 0 0 3908 393 4005 13980;13981 21102;21103 21102 2 FTDILVR LKKRLQLPVWEYKDRFTDILVRHQSFVLVG PVWEYKDRFTDILVRHQSFVLVGETGSGKT R F T V R H 0 1 0 1 0 0 0 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 7 0 862.49125 O43143;B4E0S6 O43143 146 152 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 0.0075935 135.5 3 2 0.98283 1.3446 29.407 5 Median 1.0016 1.3446 32.99 3 0 Plateau 1.0156 1.5026 2.7805 2 0 Median 55654000 26606000 29048000 26763000 12662000 14101000 28892000 13945000 14947000 3909 1180 4006 13982;13983;13984;13985;13986 21104;21105;21106;21107;21108;21109 21105 6 FTEDSLLR KIETTVPPSGLNLNRFTEDSLLRHAQFVVE SGLNLNRFTEDSLLRHAQFVVEQVESYDEA R F T L R H 0 1 0 1 0 0 1 0 0 0 2 0 0 1 0 1 1 0 0 0 0 0 8 0 979.49746 A0A024R7E3;P26358;Q59FP7;I6L9H2 A0A024R7E3 607 614 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 no no 2 0.027774 53.166 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3987000 3987000 0 3987000 3987000 0 0 0 0 3910 176;1129 4007 13987 21110 21110 1 FTEEIPLK KSILEIMHKEAQDIKFTEEIPLKILAHNNF KEAQDIKFTEEIPLKILAHNNFVGRLIGKE K F T L K I 0 0 0 0 0 0 2 0 0 1 1 1 0 1 1 0 1 0 0 0 0 0 8 0 975.5277 O00425 O00425 273 280 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 0.025794 86.472 1 0.59654 0.75666 NaN 1 Median 0.59654 0.75666 NaN 1 0 Median NaN NaN NaN 0 0 Median 5341100 2933100 2408000 5341100 2933100 2408000 0 0 0 3911 1167 4008 13988 21111 21111 1 FTEFDAR QIKQWRKNLWIFVSKFTEFDARKLHKLYKH NLWIFVSKFTEFDARKLHKLYKHAIKKRQE K F T A R K 1 1 0 1 0 0 1 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 7 0 884.40283 A0A024RC75;O14647;O14646;B3KT33 O14646 1485 1491 CHD2;CHD1 Chromodomain-helicase-DNA-binding protein 2;Chromodomain-helicase-DNA-binding protein 1 no no 2 0.030424 63.306 1 1 0.62647 0.85602 11.552 2 Median 0.58372 0.78888 NaN 1 0 Median 0.67235 0.92888 NaN 1 0 Median 23254000 14719000 8535100 13477000 8795100 4682100 9776500 5923500 3853000 3912 1169;289 4009 13989;13990 21112;21113;21114 21113 3 FTEFDARK QIKQWRKNLWIFVSKFTEFDARKLHKLYKH LWIFVSKFTEFDARKLHKLYKHAIKKRQES K F T R K L 1 1 0 1 0 0 1 0 0 0 0 1 0 2 0 0 1 0 0 0 0 0 8 1 1012.4978 A0A024RC75;O14647;O14646;B3KT33 O14646 1485 1492 CHD2;CHD1 Chromodomain-helicase-DNA-binding protein 2;Chromodomain-helicase-DNA-binding protein 1 no no 2 0.03795 50.703 1 0.78509 1.0105 NaN 1 Median 0.78509 1.0105 NaN 1 0 Median NaN NaN NaN 0 0 Median 4256600 2185900 2070700 4256600 2185900 2070700 0 0 0 3913 1169;289 4010 13991 21115 21115 1 FTEYETQVK KDLKTGHSKGFGFVRFTEYETQVKVMSQRH GFGFVRFTEYETQVKVMSQRHMIDGRWCDC R F T V K V 0 0 0 0 0 1 2 0 0 0 0 1 0 1 0 0 2 0 1 1 0 0 9 0 1143.5448 A0A087WX29;B4DRW3;A0A0A0N0L3;A0A024R4E2;Q13148;A0A087WW61;A0A087WX67;A0A087WXV3;A0A087WXQ5;A0A087WV68;B1AKP7;G3V162;A0A087X260;A0A087WYY0;K7EJM5;A0A0A0N0N3;A0A0A0N0M3;K7EN94 A0A087WX29 152 160 TARDBP;TDP43 TAR DNA-binding protein 43 yes no 2 0.00051966 120.87 4 0.40123 0.50051 4.8131 3 Median 0.40123 0.50051 4.8131 3 0 Median NaN NaN NaN 0 0 Median 43642000 31750000 11892000 43642000 31750000 11892000 0 0 0 3914 121 4011 13992;13993;13994;13995 21116;21117;21118;21119 21118 4 FTFLYVGDQLHLNPQVAK AEEAASMSVEERKAKFTFLYVGDQLHLNPQ LYVGDQLHLNPQVAKEAGIAAESLGEMAES K F T A K E 1 0 1 1 0 2 0 1 1 0 3 1 0 2 1 0 1 0 1 2 0 0 18 0 2089.0997 O96028;Q05CW4;D6R9V2 O96028 344 361 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 3 1.1723E-23 150.76 4 2 0.91627 1.2343 6.3254 6 Median 0.97283 1.2271 7.7422 4 0 Median 0.80577 1.2378 1.9617 2 0 Median 134030000 72053000 61980000 92094000 48645000 43449000 41939000 23408000 18531000 3915 1228 4012 13996;13997;13998;13999;14000;14001 21120;21121;21122;21123;21124;21125;21126;21127;21128;21129;21130;21131;21132;21133;21134 21125 15 FTFYDGPPFATGLPHYGHILAGTIK NCFQECLKQSKHKPKFTFYDGPPFATGLPH TGLPHYGHILAGTIKDIVTRYAHQSGFHVD K F T I K D 2 0 0 1 0 0 0 4 2 2 2 1 0 3 3 0 3 0 2 0 0 0 25 0 2719.3799 Q59G75;P41252;A0A0A0MSX9;Q7Z3U5;B4DVX2;Q5TCD1 Q59G75 58 82 IARS;DKFZp686L0869 Isoleucine--tRNA ligase, cytoplasmic yes no 4 0.00028741 33.665 1 0.39609 0.49992 NaN 1 Median 0.39609 0.49992 NaN 1 0 Median NaN NaN NaN 0 0 Median 11005000 8149400 2855600 11005000 8149400 2855600 0 0 0 3916 1334 4013 14002 21135;21136 21136 2 FTIENVTR SRAIGRIAGKGGKTKFTIENVTRTRIVLAD GKGGKTKFTIENVTRTRIVLADVKVHILGS K F T T R T 0 1 1 0 0 0 1 0 0 1 0 0 0 1 0 0 2 0 0 1 0 0 8 0 978.51345 B2R823;Q9NRX1 B2R823 192 199 PNO1 RNA-binding protein PNO1 yes no 2 0.012637 68.383 2 0.64951 0.93316 4.7697 2 Median NaN NaN NaN 0 0 Median 0.64951 0.93316 4.7697 2 0 Median 24625000 15567000 9057800 0 0 0 24625000 15567000 9057800 3917 713 4014 14003;14004 21137;21138;21139 21138 3 FTITPPTAQVVGVLK QPKNFWNGRWRSEWKFTITPPTAQVVGVLK FTITPPTAQVVGVLKIQVHYYEDGNVQLVS K F T L K I 1 0 0 0 0 1 0 1 0 1 1 1 0 1 2 0 3 0 0 3 0 0 15 0 1569.913 A8K0T9;A0A024R0E5;P52907 A8K0T9 179 193 CAPZA1 F-actin-capping protein subunit alpha-1 yes no 2 9.2749E-08 136.81 4 0.84872 1.0532 21.026 4 Median 0.84872 1.0532 21.026 4 0 Median NaN NaN NaN 0 0 Median 134240000 70301000 63943000 134240000 70301000 63943000 0 0 0 3918 32 4015 14005;14006;14007;14008 21140;21141;21142;21143;21144;21145;21146 21141 7 FTLAGHTK TQSKPTPVKPNYALKFTLAGHTKAVSSVKF KPNYALKFTLAGHTKAVSSVKFSPNGEWLA K F T T K A 1 0 0 0 0 0 0 1 1 0 1 1 0 1 0 0 2 0 0 0 0 0 8 0 873.47085 P61964;V9GYQ5;V9GZ59 P61964 39 46 WDR5 WD repeat-containing protein 5 yes no 2 0.00015993 132.08 2 0.84249 1.0398 13.514 2 Median 0.84249 1.0398 13.514 2 0 Median NaN NaN NaN 0 0 Median 32953000 18021000 14933000 32953000 18021000 14933000 0 0 0 3919 1394 4016 14009;14010 21147;21148;21149 21147 3 FTLDCTHPVEDGIMDAANFEQFLQER KLVAKGGKKKKQVLKFTLDCTHPVEDGIMD GIMDAANFEQFLQERIKVNGKAGNLGGGVV K F T E R I 2 1 1 3 1 2 3 1 1 1 2 0 1 3 1 0 2 0 0 1 0 0 26 0 3082.3801 Q7Z4W8;P35268 Q7Z4W8 21 46 RPL22 60S ribosomal protein L22 yes no 3 2.6926E-31 140.2 11 0.86843 1.1698 14.888 8 Median 0.86843 1.1698 14.888 8 0 Median NaN NaN NaN 0 0 Median 215780000 130390000 85384000 215780000 130390000 85384000 0 0 0 3920 1319 4017;4018 14011;14012;14013;14014;14015;14016;14017;14018;14019;14020;14021 21150;21151;21152;21153;21154;21155;21156;21157;21158;21159;21160;21161;21162;21163;21164;21165;21166;21167;21168 21154 550 19 FTLRDEGK TICLETFKDFPQMGRFTLRDEGKTIAIGKV DFPQMGRFTLRDEGKTIAIGKVLKLVPEKD R F T G K T 0 1 0 1 0 0 1 1 0 0 1 1 0 1 0 0 1 0 0 0 0 0 8 1 964.49779 Q8IYD1;B4DQM6;H3BR35;Q7KZX8;B2RCT6;A8K2W7;P15170 H3BR35 453 460 GSPT2;GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3B;Eukaryotic peptide chain release factor GTP-binding subunit ERF3A no no 2 0.035579 78.334 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2847000 0 2847000 0 0 0 2847000 0 2847000 3921 586;1629 4019 14022 21169 21169 1 FTLSSSR FYLSVYFFKKKTTSRFTLSSSRNKKHAKNN FKKKTTSRFTLSSSRNKKHAKNNFTCVACH R F T S R N 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 3 1 0 0 0 0 0 7 0 796.40792 A8K330;Q8IWA0 A8K330 191 197 WDR75 WD repeat-containing protein 75 yes no 2 0.012642 101.21 1 0.80171 1.1125 NaN 1 Median 0.80171 1.1125 NaN 1 0 Median NaN NaN NaN 0 0 Median 57916000 31821000 26095000 57916000 31821000 26095000 0 0 0 3922 588 4020 14023 21170 21170 1 FTLTQSEADADILFNFSHFK YTDVQQVASSLTHPRFTLTQSEADADILFN SEADADILFNFSHFKDYRKLSQERPGVLLN R F T F K D 2 0 1 2 0 1 1 0 1 1 2 1 0 4 0 2 2 0 0 0 0 0 20 0 2330.1219 A0A024R4U3;Q14166 A0A024R4U3 323 342 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes no 3 0.00074188 76.329 2 0.63193 0.79001 NaN 1 Median 0.63193 0.79001 NaN 1 0 Median NaN NaN NaN 0 0 Median 8623700 5301600 3322000 8623700 5301600 3322000 0 0 0 3923 127 4021 14024;14025 21171;21172 21172 2 FTNTQITEHYSTCIK SPSSRSIDISATIPKFTNTQITEHYSTCIK FTNTQITEHYSTCIKLSTENKITTKNAFGL K F T I K L 0 0 1 0 1 1 1 0 1 2 0 1 0 1 0 1 4 0 1 0 0 0 15 0 1841.8618 Q15003;B4DRG7;E9PHA2;A8K4T8;C9J470;C9JZP1 Q15003 102 116 NCAPH Condensin complex subunit 2 yes no 2;3 9.1745E-50 213.99 8 2 0.7303 0.9213 15.39 6 Median 0.7303 0.9213 15.39 6 0 Median NaN NaN NaN 0 0 Median 242500000 150340000 92164000 210870000 118700000 92164000 31638000 31638000 0 3924 1500 4022 14026;14027;14028;14029;14030;14031;14032;14033;14034;14035 21173;21174;21175;21176;21177;21178;21179;21180;21181;21182;21183;21184;21185;21186;21187;21188;21189;21190 21178 18 FTPGTFTNQIQAAFR LKFAAATGATPIAGRFTPGTFTNQIQAAFR FTPGTFTNQIQAAFREPRLLVVTDPRADHQ R F T F R E 2 1 1 0 0 2 0 1 0 1 0 0 0 3 1 0 3 0 0 0 0 0 15 0 1697.8526 C9J9K3;A0A024R2P0;A0A0C4DG17;P08865;Q96RS2 C9J9K3 103 117 RPSA 40S ribosomal protein SA yes no 2 3.5901E-36 169.82 5 2 0.79751 1.1089 74.26 5 Median 0.7746 1.0556 3.2619 3 0 Median 2.5603 4.1434 1.2734 2 0 Median 348900000 142310000 206590000 232630000 111520000 121100000 116270000 30783000 85484000 3925 90 4023 14036;14037;14038;14039;14040;14041;14042 21191;21192;21193;21194;21195;21196;21197;21198;21199;21200;21201 21196 11 FTPGTFTNQIQAAFREPR LKFAAATGATPIAGRFTPGTFTNQIQAAFR GTFTNQIQAAFREPRLLVVTDPRADHQPLT R F T P R L 2 2 1 0 0 2 1 1 0 1 0 0 0 3 2 0 3 0 0 0 0 0 18 1 2080.049 C9J9K3;A0A024R2P0;A0A0C4DG17;P08865;Q96RS2 C9J9K3 103 120 RPSA 40S ribosomal protein SA yes no 3 6.266E-18 116.79 4 2 0.86703 1.2001 65.492 6 Median 0.85496 1.1751 3.2599 4 0 Median 2.6403 4.1494 3.4454 2 0 Median 486360000 229590000 256770000 383790000 202950000 180840000 102570000 26642000 75927000 3926 90 4024 14043;14044;14045;14046;14047;14048 21202;21203;21204;21205;21206;21207;21208;21209;21210;21211;21212;21213;21214 21208 13 FTPYVGPIIPCILK YIMMFNYLPITFGDKFTPYVGPIIPCILKA KFTPYVGPIIPCILKALADENEFVRDTALR K F T L K A 0 0 0 0 1 0 0 1 0 3 1 1 0 1 3 0 1 0 1 1 0 0 14 0 1616.9 E1NZA1;Q92616;A0A024RBS1 E1NZA1 1771 1784 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.0046164 79.974 3 0.34545 0.44669 16.228 3 Median 0.34545 0.44669 16.228 3 0 Median NaN NaN NaN 0 0 Median 8324900 5862400 2462600 8324900 5862400 2462600 0 0 0 3927 1000 4025 14049;14050;14051 21215;21216;21217;21218;21219 21215 5 FTQLDLEDVQVR KLNKITKFIEENKEKFTQLDLEDVQVREKL KEKFTQLDLEDVQVREKLKHATSKAKKLEK K F T V R E 0 1 0 2 0 2 1 0 0 0 2 0 0 1 0 0 1 0 0 2 0 0 12 0 1461.7464 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83 Q9NTJ3 390 401 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 5.0782E-33 218.07 4 2 0.6722 0.96296 9.8491 6 Median 0.6722 0.91909 4.4793 4 0 Median 0.67406 1.115 4.0364 2 0 Median 899690000 549760000 349940000 409300000 243400000 165900000 490390000 306360000 184030000 3928 1760 4026 14052;14053;14054;14055;14056;14057 21220;21221;21222;21223;21224;21225;21226;21227;21228;21229;21230;21231;21232;21233;21234;21235;21236 21220 17 FTQTSGETTDADKEPAGEDK RVQKVQVKEEPSAVKFTQTSGETTDADKEP GETTDADKEPAGEDKGIKALKESAKQTPAP K F T D K G 2 0 0 3 0 1 3 2 0 0 0 2 0 1 1 1 4 0 0 0 0 0 20 1 2125.9288 P46013 P46013 2742 2761 MKI67 Antigen KI-67 yes yes 2;3 4.4058E-126 287.43 8 4 0.90468 1.1115 21.185 12 Median 0.88159 1.0704 5.1612 8 0 Median 1.0058 1.6242 0.77489 4 0 Median 1521200000 777970000 743180000 807930000 424480000 383460000 713220000 353500000 359720000 3929 1342 4027 14058;14059;14060;14061;14062;14063;14064;14065;14066;14067;14068;14069 21237;21238;21239;21240;21241;21242;21243;21244;21245;21246;21247;21248;21249;21250;21251;21252;21253;21254;21255;21256;21257 21237 21 FTSGAFLSPSVSVQECR SSKTRSLVGGLLQSKFTSGAFLSPSVSVQE SGAFLSPSVSVQECRTPRAASLMNIPSTSS K F T C R T 1 1 0 0 1 1 1 1 0 0 1 0 0 2 1 4 1 0 0 2 0 0 17 0 1870.8883 P52948;H7C3P6;A0A024RCC4 P52948 1053 1069 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.0050949 45.257 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3473600 3473600 0 3473600 3473600 0 0 0 0 3930 1367 4028 14070 21258 21258 1 FTTEEEVDYTVEK DEDLAHSSIRFGIGRFTTEEEVDYTVEKCI GRFTTEEEVDYTVEKCIQHVKRLREMSPLW R F T E K C 0 0 0 1 0 0 4 0 0 0 0 1 0 1 0 0 3 0 1 2 0 0 13 0 1588.7144 Q5QP19;Q53FP3;B2R5S3;Q9Y697;H7C0I5;H0YGN5;B4DNL7 Q5QP19 353 365 NFS1 Cysteine desulfurase, mitochondrial yes no 2 0.00076429 110.08 2 0.5681 0.72795 NaN 1 Median 0.5681 0.72795 NaN 1 0 Median NaN NaN NaN 0 0 Median 4632000 3247700 1384300 4632000 3247700 1384300 0 0 0 3931 691 4029 14071;14072 21259;21260 21260 2 FTVETACK RNGYGAKLCNIFSTKFTVETACKEYKHSFK CNIFSTKFTVETACKEYKHSFKQTWMNNMM K F T C K E 1 0 0 0 1 0 1 0 0 0 0 1 0 1 0 0 2 0 0 1 0 0 8 0 954.44807 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 170 177 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.0020955 116.9 2 2 0.69004 0.86413 0.43378 2 Median 0.69004 0.86413 0.43378 2 0 Median NaN NaN NaN 0 0 Median 48411000 28675000 19737000 44960000 25223000 19737000 3451400 3451400 0 3932 1437 4030 14073;14074;14075;14076 21261;21262;21263;21264;21265 21261 5 FTVETASR RNGYGAKLCNIFSTKFTVETASREYKKMFK CNIFSTKFTVETASREYKKMFKQTWMDNMG K F T S R E 1 1 0 0 0 0 1 0 0 0 0 0 0 1 0 1 2 0 0 1 0 0 8 0 909.4556 P11388 P11388 177 184 TOP2A DNA topoisomerase 2-alpha yes yes 1;2 0.00019123 153.73 6 2 0.83676 1.1907 8.5101 8 Median 0.84337 1.1487 6.2502 6 0 Median 0.80681 1.3414 1.0964 2 0 Median 2600900000 1388200000 1212700000 1871800000 993380000 878460000 729100000 394830000 334260000 3933 1256 4031 14077;14078;14079;14080;14081;14082;14083;14084 21266;21267;21268;21269;21270;21271;21272;21273;21274;21275;21276;21277 21266 12 FTVLFPSGTPLPAR RDILVKGVDESGASRFTVLFPSGTPLPARR RFTVLFPSGTPLPARRQHTLQAPGSISSVC R F T A R R 1 1 0 0 0 0 0 1 0 0 2 0 0 2 3 1 2 0 0 1 0 0 14 0 1501.8293 Q0VDF9 Q0VDF9 412 425 HSPA14 Heat shock 70 kDa protein 14 yes yes 2 6.9636E-07 134.3 3 0.41212 0.57271 4.9284 3 Median 0.41212 0.57271 4.9284 3 0 Median NaN NaN NaN 0 0 Median 12206000 8364700 3841500 12206000 8364700 3841500 0 0 0 3934 1455 4032 14085;14086;14087 21278;21279;21280 21278 3 FTVPMLK EEELKTHISKGTLGKFTVPMLKEACRAYGL ISKGTLGKFTVPMLKEACRAYGLKSGLKKQ K F T L K E 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 0 0 1 0 0 7 0 834.46735 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356;Q6IC76 A0A024R1N4 576 582 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 2 0.03539 44.692 1 0.46849 0.68992 NaN 1 Median NaN NaN NaN 0 0 Median 0.46849 0.68992 NaN 1 0 Median 7721400 5182500 2538900 0 0 0 7721400 5182500 2538900 3935 62 4033 14088 21281 21281 1 FTVVVLR DPYQHIIVEHQYSHKFTVVVLRATKVTKGA VEHQYSHKFTVVVLRATKVTKGAFGDMLDT K F T L R A 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 3 0 0 7 0 832.51707 A8K2S1;P47712;B4DZI4;Q14064 A8K2S1 20 26 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase yes no 2 0.016534 71.949 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2312000 2312000 0 2312000 2312000 0 0 0 0 3936 584 4034 14089 21282 21282 1 FVADGIFK ______________________________ QISKKRKFVADGIFKAELNEFLTRELAEDG K F V F K A 1 0 0 1 0 0 0 1 0 1 0 1 0 2 0 0 0 0 0 1 0 0 8 0 895.48035 P23396;Q53G83;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;E9PQ96;E9PJH4;E9PK82;E9PQX2 P23396 11 18 RPS3 40S ribosomal protein S3 yes no 2 0.013568 75.189 3 2 0.80589 1.0582 48.557 5 Median 0.77429 1.0182 4.616 3 0 Median 1.615 2.4535 1.5341 2 0 Median 396440000 206630000 189810000 353510000 192130000 161370000 42930000 14499000 28431000 3937 1293 4035 14090;14091;14092;14093;14094 21283;21284;21285;21286;21287;21288;21289;21290 21286 8 FVASCGFTPDVK NQMNNTHAAVSPCGRFVASCGFTPDVKVWE CGRFVASCGFTPDVKVWEVCFGKKGEFQEV R F V V K V 1 0 0 1 1 0 0 1 0 0 0 1 0 2 1 1 1 0 0 2 0 0 12 0 1326.6278 B4DY59;E9PF19;A0A0S2Z5F3;Q8N2L6;B2RB52;Q9Y4P3;B4DY50;Q96E41 B4DY59 114 125 TBL2 Transducin beta-like protein 2 yes no 2 0.00029838 88.681 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1977500 1977500 0 1977500 1977500 0 0 0 0 3938 480 4036 14095;14096;14097 21291;21292;21293 21292 3 FVCIYHVR YSADGHSILAGGMSKFVCIYHVREQILMKR LAGGMSKFVCIYHVREQILMKRFEISCNLS K F V V R E 0 1 0 0 1 0 0 0 1 1 0 0 0 1 0 0 0 0 1 2 0 0 8 0 1092.5539 Q15269;A0A0B4J2E5 Q15269 628 635 PWP2 Periodic tryptophan protein 2 homolog yes no 2;3 0.0094939 65.672 4 1 0.89557 1.1949 37.493 3 Median 1.017 1.3796 20.324 2 0 Median 0.57061 0.75729 NaN 1 0 Median 33002000 18571000 14430000 30402000 16948000 13454000 2599400 1622900 976470 3939 1508 4037 14098;14099;14100;14101;14102 21294;21295;21296;21297;21298;21299;21300;21301 21300 8 FVDEGSLYGLSIATSR EVYVWDVNSRKCLNRFVDEGSLYGLSIATS VDEGSLYGLSIATSRNGQYVACGSNCGVVN R F V S R N 1 1 0 1 0 0 1 2 0 1 2 0 0 1 0 3 1 0 1 1 0 0 16 0 1713.8574 Q9Y5J1;B2RAX6;J3KSR7;J3QR85;J3QRG0;J3QLD6 Q9Y5J1 420 435 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2 2.0122E-64 247.67 7 2 0.89535 1.3354 5.9099 6 Median 0.95256 1.3005 6.0718 4 0 Median 0.84355 1.3671 1.3791 2 0 Median 266210000 139910000 126310000 143170000 73361000 69813000 123040000 66547000 56493000 3940 1830 4038 14103;14104;14105;14106;14107;14108;14109;14110;14111 21302;21303;21304;21305;21306;21307;21308;21309;21310;21311;21312;21313;21314 21306 13 FVDGLMIHSGDPVNYYVDTAVR VVSGKLRGQRAKSMKFVDGLMIHSGDPVNY HSGDPVNYYVDTAVRHVLLRQGVLGIKVKI K F V V R H 1 1 1 3 0 0 0 2 1 1 1 0 1 1 1 1 1 0 2 4 0 0 22 0 2467.1842 P23396;Q53G83;E9PL09;H0YEU2;A7E2S3;Q9NQS8;E9PSF4 P23396 152 173 RPS3 40S ribosomal protein S3 yes no 3 9.3664E-14 122.64 6 1 0.76366 1.0394 36.042 7 Median 0.7576 1.023 8.8809 6 0 Median 1.6696 2.6329 NaN 1 0 Median 190890000 101850000 89039000 150590000 87031000 63555000 40300000 14816000 25484000 3941 1293 4039;4040 14112;14113;14114;14115;14116;14117;14118 21315;21316;21317;21318;21319;21320;21321;21322;21323;21324;21325;21326;21327 21318 545 13 FVDGVSTVAR KEGMFNNANVLFKTKFVDGVSTVARFTQCQ LFKTKFVDGVSTVARFTQCQNGKISKEAKS K F V A R F 1 1 0 1 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 3 0 0 10 0 1049.5506 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1 A0A024R158 1161 1170 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 3.3618E-11 138.06 4 3 0.70406 1.0246 9.8457 7 Median 0.71526 0.97841 10.883 4 0 Median 0.6465 1.0429 8.2231 3 0 Median 525950000 302700000 223250000 431810000 245450000 186360000 94142000 57255000 36887000 3942 50 4041 14119;14120;14121;14122;14123;14124;14125 21328;21329;21330;21331;21332;21333;21334;21335;21336;21337;21338;21339 21334 12 FVDILGLR DHAMIGPEGTDNCHKFVDILGLRTIFPLFM GTDNCHKFVDILGLRTIFPLFMKSPRKIKK K F V L R T 0 1 0 1 0 0 0 1 0 1 2 0 0 1 0 0 0 0 0 1 0 0 8 0 931.5491 A0A087WUB9;Q8WYA6 A0A087WUB9 378 385 CTNNBL1 Beta-catenin-like protein 1 yes no 2 0.0031019 97.068 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 838380 838380 0 838380 838380 0 0 0 0 3943 342 4042 14126;14127 21340;21341 21341 2 FVDLYGAQK VFGLGFPPCLGGPFRFVDLYGAQKIVDRLK LGGPFRFVDLYGAQKIVDRLKKYEAAYGKQ R F V Q K I 1 0 0 1 0 1 0 1 0 0 1 1 0 1 0 0 0 0 1 1 0 0 9 0 1039.5338 B4DDZ5;H0YFD6;E9KL44;P40939;B4DRH6 E9KL44 720 728 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase no no 2 0.00056873 119.29 3 0.63665 0.80898 4.169 3 Median 0.63665 0.80898 4.169 3 0 Median NaN NaN NaN 0 0 Median 21979000 13457000 8521700 21979000 13457000 8521700 0 0 0 3944 1020;797 4043 14128;14129;14130 21342;21343;21344;21345 21343 4 FVEGTNINR AGSERASTSGAKGTRFVEGTNINRSLLALG GAKGTRFVEGTNINRSLLALGNVINALADS R F V N R S 0 1 2 0 0 0 1 1 0 1 0 0 0 1 0 0 1 0 0 1 0 0 9 0 1048.5302 B2R6H3;Q8NI77;Q4G194 B2R6H3 275 283 KIF18A Kinesin-like protein;Kinesin-like protein KIF18A yes no 2 0.029079 45.972 1 0.61694 0.82014 NaN 1 Median 0.61694 0.82014 NaN 1 0 Median NaN NaN NaN 0 0 Median 6310400 3385200 2925200 6310400 3385200 2925200 0 0 0 3945 699 4044 14131 21346 21346 1 FVEGVCPFCGYEEARGDQCDK EQLRCEHCARFLADRFVEGVCPFCGYEEAR PFCGYEEARGDQCDKCGKLINAVELKKPQC R F V D K C 1 1 0 2 3 1 3 3 0 0 0 1 0 2 1 0 0 0 1 2 0 0 21 1 2522.0301 A8K492;P56192;B4DF61;B4E0E9;H0YIC2 A8K492 400 420 MARS Methionine--tRNA ligase, cytoplasmic yes no 3 3.4799E-05 74.744 4 0.43364 0.56784 16.617 4 Median 0.43364 0.56784 16.617 4 0 Median NaN NaN NaN 0 0 Median 20987000 13927000 7059500 20987000 13927000 7059500 0 0 0 3946 602 4045 14132;14133;14134;14135 21347;21348;21349;21350;21351 21351 5 FVESVDEYQFVER LRLLSQTQGPPDYPRFVESVDEYQFVERLL PRFVESVDEYQFVERLLPATRIPDPPKHEH R F V E R L 0 1 0 1 0 1 3 0 0 0 0 0 0 2 0 1 0 0 1 3 0 0 13 0 1645.7624 A0A024R578;Q13405;E9PI78;E9PNF1 A0A024R578 38 50 MRPL49 39S ribosomal protein L49, mitochondrial yes no 2 0.0012507 89.9 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1288000 1288000 0 1288000 1288000 0 0 0 0 3947 136 4046 14136;14137 21352;21353 21353 2 FVEVGR ______________________________ ______________________________ R F V G R V 0 1 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 6 0 705.38097 A8K3Q9;E7EPB3;A0PJ62;B7Z6S8;A8K7N0;Q6IPH7;P50914 A8K3Q9 6 11 RPL14 60S ribosomal protein L14 no no 2 0.035082 89.457 2 1 0.68533 1.063 7.5903 3 Median 0.74073 1.0212 10.222 2 0 Median 0.6453 1.063 NaN 1 0 Median 800800000 462310000 338490000 732280000 420270000 312020000 68523000 42049000 26474000 3948 596;532 4047 14138;14139;14140 21354;21355;21356 21355 3 FVFFNIPQIQYK VNYNTHGELGEGARKFVFFNIPQIQYKNPW ARKFVFFNIPQIQYKNPWVQIMMFKNMTPS K F V Y K N 0 0 1 0 0 2 0 0 0 2 0 1 0 3 1 0 0 0 1 1 0 0 12 0 1542.8235 P82663;E7EPW2 P82663 47 58 MRPS25 28S ribosomal protein S25, mitochondrial yes no 2 1.901E-11 153.08 4 0.56056 0.71664 13.041 4 Median 0.56056 0.71664 13.041 4 0 Median NaN NaN NaN 0 0 Median 18453000 12021000 6432200 18453000 12021000 6432200 0 0 0 3949 1429 4048 14141;14142;14143;14144 21357;21358;21359;21360;21361;21362 21357 6 FVFGTTPEDILR GGVNDNFQGVLQNVRFVFGTTPEDILRNKG NVRFVFGTTPEDILRNKGCSSSTSVFVTLD R F V L R N 0 1 0 1 0 0 1 1 0 1 1 0 0 2 1 0 2 0 0 1 0 0 12 0 1393.7242 CON__Q28194;A0A024R9Q1;P07996;A0PJG0 CON__Q28194 217 228 THBS1 Thrombospondin-1 yes no 2 0.0052947 57.598 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2374700 2374700 0 2374700 2374700 0 0 0 0 + 3950 229 4049 14145 21363;21364 21364 2 FVFMLSTR RQDSINAYNEPNSTKFVFMLSTRAGGLGIN NEPNSTKFVFMLSTRAGGLGINLATADVVI K F V T R A 0 1 0 0 0 0 0 0 0 0 1 0 1 2 0 1 1 0 0 1 0 0 8 0 999.52117 O60264;B7ZAX9;B4DZC0;Q4W5H1 O60264 553 560 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 0.028503 54.776 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11057000 0 11057000 0 0 0 11057000 0 11057000 3951 1189 4050 14146;14147 21365;21366 21365 2 FVGGVYGGNIKPTPFLCLTLK GLTAELVVDKAMELRFVGGVYGGNIKPTPF GGNIKPTPFLCLTLKMLQIQPEKDIIVEFI R F V L K M 0 0 1 0 1 0 0 4 0 1 3 2 0 2 2 0 2 0 1 2 0 0 21 1 2280.234 Q8NAV1 Q8NAV1 56 76 PRPF38A Pre-mRNA-splicing factor 38A yes yes 3 0.00048167 51.566 3 0.4899 0.5915 23.699 3 Median 0.4899 0.5915 23.699 3 0 Median NaN NaN NaN 0 0 Median 11981000 8248100 3733000 11981000 8248100 3733000 0 0 0 3952 1647 4051 14148;14149;14150 21367;21368;21369;21370;21371 21371 5 FVIATSTK PLVLNRVPLRRTHQKFVIATSTKIDISNVK LRRTHQKFVIATSTKIDISNVKIPKHLTDA K F V T K I 1 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 2 0 0 1 0 0 8 0 865.49092 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3 Q8TBK5 193 200 RPL6 60S ribosomal protein L6 yes no 2 2.2372E-05 138.83 4 2 0.99331 1.2652 17.851 4 Linear 0.90824 1.1881 9.6718 2 0 Median 0.55725 0.88872 4.397 2 0 Median 1181200000 492000000 689230000 1043100000 403100000 640030000 138090000 88894000 49198000 3953 277 4052 14151;14152;14153;14154;14155;14156 21372;21373;21374;21375;21376;21377;21378;21379;21380;21381 21375 10 FVIGGPQGDAGLTGR YLDEDTIYHLQPSGRFVIGGPQGDAGLTGR FVIGGPQGDAGLTGRKIIVDTYGGWGAHGG R F V G R K 1 1 0 1 0 1 0 5 0 1 1 0 0 1 1 0 1 0 0 1 0 0 15 0 1443.747 B4DEX8;A0A140VJP5;P31153 B4DEX8 250 264 MAT2A S-adenosylmethionine synthase;S-adenosylmethionine synthase isoform type-2 yes no 2 1.0373E-10 116.84 3 0.32699 0.43576 8.8761 2 Median 0.32699 0.43576 8.8761 2 0 Median NaN NaN NaN 0 0 Median 48572000 40713000 7858900 48572000 40713000 7858900 0 0 0 3954 501 4053 14157;14158;14159 21382;21383;21384;21385;21386;21387;21388 21387 7 FVIGGPQGDAGLTGRK YLDEDTIYHLQPSGRFVIGGPQGDAGLTGR VIGGPQGDAGLTGRKIIVDTYGGWGAHGGG R F V R K I 1 1 0 1 0 1 0 5 0 1 1 1 0 1 1 0 1 0 0 1 0 0 16 1 1571.842 B4DEX8;A0A140VJP5;P31153 B4DEX8 250 265 MAT2A S-adenosylmethionine synthase;S-adenosylmethionine synthase isoform type-2 yes no 3 0.035169 28.58 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3955 501 4054 14160 21389 21389 1 FVIHCNSPVWGADK VAGAAVSAGHGLPAKFVIHCNSPVWGADKC KFVIHCNSPVWGADKCEELLEKTVKNCLAL K F V D K C 1 0 1 1 1 0 0 1 1 1 0 1 0 1 1 1 0 1 0 2 0 0 14 0 1628.7769 O75367;Q59FH0;B4DJC3 O75367 272 285 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2;3 5.739E-05 64.04 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48650000 48650000 0 0 0 0 48650000 48650000 0 3956 1198 4055 14161;14162;14163 21390;21391;21392 21391 3 FVINYDYPNSSEDYIHR ATDVASRGLDVEDVKFVINYDYPNSSEDYI INYDYPNSSEDYIHRIGRTARSTKTGTAYT K F V H R I 0 1 2 2 0 0 1 0 1 2 0 0 0 1 1 2 0 0 3 1 0 0 17 0 2130.9647 B4DN41;J3KTA4;B5BUE6;P17844;B4DNG2 B4DN41 401 417 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 3 3.1879E-11 136.81 4 1 0.38565 0.51681 71.096 4 Median 0.42615 0.57422 14.739 3 0 Plateau 1.3731 1.9774 NaN 1 0 Median 104240000 71368000 32867000 92959000 66841000 26118000 11276000 4527300 6748300 3957 833 4056 14164;14165;14166;14167;14168 21393;21394;21395;21396;21397;21398 21395 6 FVINYDYPNSSEDYVHR ATDVASRGLDVEDVKFVINYDYPNSSEDYV INYDYPNSSEDYVHRIGRTARSTNKGTAYT K F V H R I 0 1 2 2 0 0 1 0 1 1 0 0 0 1 1 2 0 0 3 2 0 0 17 0 2116.949 Q59F66;Q92841 Q59F66 491 507 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 3 9.2283E-05 92.8 4 1 0.61278 0.81621 42.259 5 Median 0.60514 0.81536 3.1565 4 0 Median 1.4702 2.0715 NaN 1 0 Median 73080000 39948000 33132000 65167000 37339000 27828000 7912800 2609000 5303900 3958 1554 4057 14169;14170;14171;14172;14173 21399;21400;21401;21402;21403;21404 21400 6 FVIQGAGAK MEDPGVRDTMLQALRFVIQGAGAKVDAVIR MLQALRFVIQGAGAKVDAVIRKNIVSLLLS R F V A K V 2 0 0 0 0 1 0 2 0 1 0 1 0 1 0 0 0 0 0 1 0 0 9 0 889.50215 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2410 2418 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.041067 77.058 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3069800 3069800 0 3069800 3069800 0 0 0 0 3959 1000 4058 14174 21405 21405 1 FVLDHEDGLNLNEDLENFLQK QFEYKIQAELAVILKFVLDHEDGLNLNEDL DGLNLNEDLENFLQKAPVPSTCSSTFPEEL K F V Q K A 0 0 3 3 0 1 3 1 1 0 5 1 0 2 0 0 0 0 0 1 0 0 21 0 2501.2074 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;F5H0Z7;F5H763;Q86XH4;G1UI36;F5H2F3;F5H3L6;A8K394;Q4LE64;Q14980 Q4LE64 133 153 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 5.9823E-17 110.6 4 1 0.71052 0.90113 24.074 5 Median 0.71615 0.90148 11.117 4 0 Median 0.34734 0.5264 NaN 1 0 Median 120220000 75845000 44373000 106260000 65591000 40665000 13961000 10253000 3708000 3960 148;1499;590 4059 14175;14176;14177;14178;14179 21406;21407;21408;21409;21410;21411;21412;21413;21414 21410 9 FVLNLIK QIIEEDAALVEIGPRFVLNLIKIFQGSFGG ALVEIGPRFVLNLIKIFQGSFGGPTLYENP R F V I K I 0 0 1 0 0 0 0 0 0 1 2 1 0 1 0 0 0 0 0 1 0 0 7 0 845.53747 Q8TDN6;A0JLQ5 Q8TDN6 236 242 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 2 0.012174 114.54 5 3 1.0136 1.3573 5.6607 6 Median 1.0602 1.3824 6.0493 4 0 Median 0.83702 1.3339 5.0659 2 0 Median 512090000 258710000 253380000 366300000 177850000 188450000 145790000 80860000 64928000 3961 1659 4060 14180;14181;14182;14183;14184;14185;14186;14187 21415;21416;21417;21418;21419;21420;21421;21422;21423;21424;21425;21426;21427;21428;21429 21415 15 FVNLGIEPPK KLREVVETPLLHPERFVNLGIEPPKGVLLF LHPERFVNLGIEPPKGVLLFGPPGTGKTLC R F V P K G 0 0 1 0 0 0 1 1 0 1 1 1 0 1 2 0 0 0 0 1 0 0 10 0 1112.623 A0A140VK70;P35998;Q75L23 A0A140VK70 201 210 PSMC2 26S protease regulatory subunit 7 yes no 2 7.1758E-06 84.615 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2382200 0 2382200 0 0 0 2382200 0 2382200 3962 510 4061 14188;14189;14190 21430;21431;21432 21430 3 FVNVVPTFGK KKTGRAKRRMQYNRRFVNVVPTFGKKKGPN QYNRRFVNVVPTFGKKKGPNANS_______ R F V G K K 0 0 1 0 0 0 0 1 0 0 0 1 0 2 1 0 1 0 0 3 0 0 10 0 1106.6124 E9PR30;P62861 E9PR30 81 90 FAU 40S ribosomal protein S30 yes no 1;2 4.1947E-08 150.27 24 3 0.99267 1.3004 14.879 14 Median 1.0113 1.3164 14.508 12 0 Median 0.67523 1.0604 3.8739 2 0 Median 7270300000 3834400000 3435900000 5850800000 2995300000 2855400000 1419500000 839090000 580430000 3963 1045 4062 14191;14192;14193;14194;14195;14196;14197;14198;14199;14200;14201;14202;14203;14204;14205;14206;14207;14208;14209;14210;14211;14212;14213;14214;14215;14216;14217 21433;21434;21435;21436;21437;21438;21439;21440;21441;21442;21443;21444;21445;21446;21447;21448;21449;21450;21451;21452;21453;21454;21455;21456;21457;21458;21459;21460;21461;21462;21463;21464;21465;21466;21467;21468;21469;21470;21471;21472;21473;21474;21475;21476;21477;21478;21479;21480;21481;21482;21483;21484;21485;21486;21487 21452 54 FVNVVPTFGKK KKTGRAKRRMQYNRRFVNVVPTFGKKKGPN YNRRFVNVVPTFGKKKGPNANS________ R F V K K K 0 0 1 0 0 0 0 1 0 0 0 2 0 2 1 0 1 0 0 3 0 0 11 1 1234.7074 E9PR30;P62861 E9PR30 81 91 FAU 40S ribosomal protein S30 yes no 2;3 3.9169E-05 121.61 6 3 1.0314 1.2643 14.681 8 Median 1.0394 1.2699 1.5414 5 0 Median 0.60473 0.97403 1.512 3 0 Plateau 774250000 367290000 406960000 646280000 290500000 355780000 127970000 76781000 51186000 3964 1045 4063 14218;14219;14220;14221;14222;14223;14224;14225;14226 21488;21489;21490;21491;21492;21493;21494;21495;21496;21497;21498;21499;21500;21501;21502;21503;21504;21505;21506;21507 21490 20 FVPLLPGNR PQTECRHKSIELFYKFVPLLPGNRSPNLWL IELFYKFVPLLPGNRSPNLWLKDVLKEEGV K F V N R S 0 1 1 0 0 0 0 1 0 0 2 0 0 1 2 0 0 0 0 1 0 0 9 0 1011.5866 P78527 P78527 1194 1202 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0059549 70.268 2 0.3985 0.53147 4.1952 2 Median 0.3985 0.53147 4.1952 2 0 Median NaN NaN NaN 0 0 Median 53648000 39053000 14595000 53648000 39053000 14595000 0 0 0 3965 1427 4064 14227;14228 21508;21509;21510 21508 3 FVPQDVPPEPK DGTKRSRRQIKEPVKFVPQDVPPEPKKIPI EPVKFVPQDVPPEPKKIPIRNTRTRGRKRS K F V P K K 0 0 0 1 0 1 1 0 0 0 0 1 0 1 4 0 0 0 0 2 0 0 11 0 1251.6499 A0A0U1RRH6;O94880;B4DG57 A0A0U1RRH6 810 820 PHF14 PHD finger protein 14 yes no 2 0.034998 47.187 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3966 487 4065 14229 21511 21511 1 FVPYLIAGIQHSCQDIGAK QGVSGAVQDKGSIHKFVPYLIAGIQHSCQD LIAGIQHSCQDIGAKSLTQVRAMMYSGELK K F V A K S 2 0 0 1 1 2 0 2 1 3 1 1 0 1 1 1 0 0 1 1 0 0 19 0 2116.0775 P12268;H0Y4R1 P12268 456 474 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2;3 7.8091E-05 64.224 4 0.40273 0.50259 10.063 3 Plateau 0.40273 0.50259 10.063 3 0 Plateau NaN NaN NaN 0 0 Median 66284000 47634000 18651000 66284000 47634000 18651000 0 0 0 3967 1261 4066 14230;14231;14232;14233 21512;21513;21514;21515 21515 4 FVQCPDGELQK FTRARDYDAMGSQTKFVQCPDGELQKRKEV SQTKFVQCPDGELQKRKEVVHTVSLHEIDV K F V Q K R 0 0 0 1 1 2 1 1 0 0 1 1 0 1 1 0 0 0 0 1 0 0 11 0 1319.618 Q9Y230;B3KNL2;M0R0Y3 Q9Y230 224 234 RUVBL2 RuvB-like 2 yes no 2 1.5773E-08 150.81 5 2 0.62113 0.77542 28.901 5 Median 0.58248 0.72588 8.6742 3 0 Median 0.79303 1.1806 13.937 2 0 Median 147200000 95519000 51684000 131480000 86366000 45112000 15725000 9152600 6572600 3968 1801 4067 14234;14235;14236;14237;14238;14239;14240 21516;21517;21518;21519;21520;21521;21522;21523;21524;21525;21526;21527;21528 21522 13 FVQETELSQR LVRRNVELFIATSQKFVQETELSQRIRDWE ATSQKFVQETELSQRIRDWEDTVQPLLQEQ K F V Q R I 0 1 0 0 0 2 2 0 0 0 1 0 0 1 0 1 1 0 0 1 0 0 10 0 1235.6146 A0A0A6YYG7;Q6IBW4;H0YC55 A0A0A6YYG7 485 494 NCAPH2 Condensin-2 complex subunit H2 yes no 2 0.00021162 92.062 1 2 0.88557 1.1899 23.986 3 Plateau 0.88833 1.1899 NaN 1 0 Median 0.56301 0.79321 7.384 2 0 Median 38583000 21337000 17245000 18079000 9363300 8715600 20504000 11974000 8529900 3969 406 4068 14241;14242;14243 21529;21530;21531;21532;21533 21533 4 FVQNVTSDLQLAAEFAAK SCPASPRGAGSSSYRFVQNVTSDLQLAAEF NVTSDLQLAAEFAAKAASEQQADTSGGDSP R F V A K A 4 0 1 1 0 2 1 0 0 0 2 1 0 2 0 1 1 0 0 2 0 0 18 0 1951.0051 U3KQ26;B4DY33;A4D1Z4;P85037;B3KV39 U3KQ26 75 92 FOXK1;KIAA0415 Forkhead box protein K1 yes no 2 5.2094E-07 110.25 2 0.32995 0.4205 NaN 1 Median 0.32995 0.4205 NaN 1 0 Median NaN NaN NaN 0 0 Median 3796200 3337900 458300 3796200 3337900 458300 0 0 0 3970 551 4069 14244;14245 21534;21535 21534 2 FVSFLGR QPPIDNIIRAGLIPKFVSFLGRTDCSPIQF IRAGLIPKFVSFLGRTDCSPIQFESAWALT K F V G R T 0 1 0 0 0 0 0 1 0 0 1 0 0 2 0 1 0 0 0 1 0 0 7 0 824.45447 Q7Z726;A8K7D9;P52292;J3QLL0;J3KS65 Q7Z726 124 130 KPNA2 Importin subunit alpha;Importin subunit alpha-1 yes no 2 0.010203 116.87 2 0.47862 0.63828 6.646 2 Median 0.47862 0.63828 6.646 2 0 Median NaN NaN NaN 0 0 Median 29615000 20199000 9415900 29615000 20199000 9415900 0 0 0 3971 633 4070 14246;14247 21536;21537;21538 21538 3 FVSTTSQNTQLVRPPIR TVKSNRSSNMTATTKFVSTTSQNTQLVRPP STTSQNTQLVRPPIRSHHSNTRDTVKQGIS K F V I R S 0 2 1 0 0 2 0 0 0 1 1 0 0 1 2 2 3 0 0 2 0 0 17 1 1943.0589 B2RMQ4;Q8WWK9 B2RMQ4 241 257 CKAP2 Cytoskeleton-associated protein 2 yes no 3 1.5205E-05 85.45 3 2 1.1561 1.5539 32.865 5 Median 1.2192 1.6286 4.2453 3 0 Median 0.59124 0.89345 1.6885 2 0 Median 110770000 57581000 53189000 68195000 30312000 37883000 42576000 27269000 15307000 3972 745 4071 14248;14249;14250;14251;14252 21539;21540;21541;21542;21543;21544;21545;21546;21547;21548 21542 10 FVTDLLLHFIK RTFNEPGSPIVKSAKFVTDLLLHFIKDQTC KSAKFVTDLLLHFIKDQTCYNIIPLYNSMK K F V I K D 0 0 0 1 0 0 0 0 1 1 3 1 0 2 0 0 1 0 0 1 0 0 11 0 1344.7806 Q8WWQ0;Q9NWP3 Q8WWQ0 1251 1261 PHIP PH-interacting protein yes no 2;3 7.9363E-12 153.24 8 0.90723 1.1332 11.53 6 Median 0.90723 1.1332 11.53 6 0 Median NaN NaN NaN 0 0 Median 104470000 49236000 55238000 104470000 49236000 55238000 0 0 0 3973 1668 4072 14253;14254;14255;14256;14257;14258;14259;14260 21549;21550;21551;21552;21553;21554;21555;21556;21557;21558;21559;21560;21561;21562 21558 14 FVTSNTQELGK AQKMGRKDPEQEVEKFVTSNTQELGKDKWL EVEKFVTSNTQELGKDKWLCPLSGKKFKGP K F V G K D 0 0 1 0 0 1 1 1 0 0 1 1 0 1 0 1 2 0 0 1 0 0 11 0 1222.6194 Q9BXP5;H7C3A1;Q7Z4Y3 Q9BXP5 700 710 SRRT Serrate RNA effector molecule homolog yes no 2 0.0035572 96.342 2 1 0.41593 0.52013 9.8954 2 Median 0.41593 0.52013 9.8954 2 0 Median NaN NaN NaN 0 0 Median 12465000 5056000 7408700 7431500 5056000 2375500 5033300 0 5033300 3974 1722 4073 14261;14262;14263 21563;21564;21565;21566 21564 4 FVTSTSDHFVEGQTVAAK SGLSGLAPKAIMSDKFVTSTSDHFVEGQTV STSDHFVEGQTVAAKVTNVDEEKQRMLLSL K F V A K V 2 0 0 1 0 1 1 1 1 0 0 1 0 2 0 2 3 0 0 3 0 0 18 0 1922.9374 Q14690;B4DH82 Q14690 765 782 PDCD11 Protein RRP5 homolog yes no 2;3 3.4553E-31 112.3 5 2 0.90416 1.1865 6.2504 6 Median 0.96165 1.2264 6.1654 4 0 Median 0.73077 1.1448 4.9938 2 0 Median 156290000 80625000 75661000 94631000 43124000 51506000 61655000 37501000 24155000 3975 1494 4074 14264;14265;14266;14267;14268;14269;14270 21567;21568;21569;21570;21571;21572;21573;21574;21575;21576;21577;21578 21578 12 FVVLETGGEAGITR EPQLCEVLQVAGPDRFVVLETGGEAGITRS RFVVLETGGEAGITRSVVATTRARVCRRKY R F V T R S 1 1 0 0 0 0 2 3 0 1 1 0 0 1 0 0 2 0 0 2 0 0 14 0 1447.7671 Q7Z2W4;A8K9U6;C9J6P4 Q7Z2W4 49 62 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 9.6848E-10 116.55 3 1 0.62191 0.86701 5.6292 3 Median 0.62191 0.86701 5.6292 3 0 Median NaN NaN NaN 0 0 Median 26328000 16119000 10209000 23575000 13366000 10209000 2752500 2752500 0 3976 1613 4075 14271;14272;14273;14274 21579;21580;21581;21582;21583 21582 5 FVVQNVSAQK SDPQGVPYPEAKIGRFVVQNVSAQKDGEKS AKIGRFVVQNVSAQKDGEKSRVKVKVRVNT R F V Q K D 1 0 1 0 0 2 0 0 0 0 0 1 0 1 0 1 0 0 0 3 0 0 10 0 1118.6084 A0A024RDQ0;A0A024RDS1;Q92598;B4DF68;B4DZB4;A0A0A0MSM0;B4DY72 A0A024RDQ0 462 471 HSPH1 Heat shock protein 105 kDa yes no 2 0.0027219 80.755 3 0.31079 0.39503 8.7108 2 Median 0.31079 0.39503 8.7108 2 0 Median NaN NaN NaN 0 0 Median 16591000 13505000 3086300 16591000 13505000 3086300 0 0 0 3977 320 4076 14275;14276;14277 21584;21585;21586 21585 3 FWDFELVK DQRGFVTGGADKSVKFWDFELVKDENSTQK GADKSVKFWDFELVKDENSTQKRLSVKQTR K F W V K D 0 0 0 1 0 0 1 0 0 0 1 1 0 2 0 0 0 1 0 1 0 0 8 0 1082.5437 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 522 529 WDR3 WD repeat-containing protein 3 yes no 2 0.020283 57.281 1 0.84209 1.0795 NaN 1 Median 0.84209 1.0795 NaN 1 0 Median NaN NaN NaN 0 0 Median 3519900 1945700 1574200 3519900 1945700 1574200 0 0 0 3978 1576 4077 14278 21587 21587 1 FWEVISDEHGIDPTGTYHGDSDLQLDR ______________________________ PTGTYHGDSDLQLDRISVYYNEATGGKYVP M F W D R I 0 1 0 5 0 1 2 3 2 2 2 0 0 1 1 2 2 1 1 1 0 0 27 0 3101.4003 Q5JP53;Q5SU16;P07437;Q6LC01;B4DY90;B4DMU8;B4DMJ5 Q5JP53 2 28 TUBB Tubulin beta chain yes no 4 0.00017916 34.125 1 3.5238 5.481 NaN 1 Median NaN NaN NaN 0 0 Median 3.5238 5.481 NaN 1 0 Median 32240000 7571100 24669000 0 0 0 32240000 7571100 24669000 3979 1241 4078 14279 21588 21588 1 FWTEVYPGAK HNKQLKKTKKRLKHRFWTEVYPGAKLFYLS RLKHRFWTEVYPGAKLFYLSGMVHGEYQNQ R F W A K L 1 0 0 0 0 0 1 1 0 0 0 1 0 1 1 0 1 1 1 1 0 0 10 0 1196.5866 Q14692 Q14692 206 215 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.023505 52.482 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1318500 0 1318500 0 0 0 1318500 0 1318500 3980 1495 4079 14280 21589 21589 1 FYAFGR MMYISKMVPTSDKGRFYAFGRVFSGLVSTG MVPTSDKGRFYAFGRVFSGLVSTGLKVRIM R F Y G R V 1 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 1 0 0 0 6 0 759.37041 P13639;Q8TA90;Q6PK56;B4DRE8 P13639 410 415 EEF2 Elongation factor 2 yes no 2 0.050071 74.849 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3981 1264 4080 14281 21590 21590 1 FYALDPSFPR VFIPEDDPLFPPIEKFYALDPSFPRMNLLT PPIEKFYALDPSFPRMNLLTRTTEGKKRQL K F Y P R M 1 1 0 1 0 0 0 0 0 0 1 0 0 2 2 1 0 0 1 0 0 0 10 0 1211.5975 Q08J23 Q08J23 536 545 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 0.005227 71.223 1 2 1.5585 2.1339 NaN 1 Median NaN NaN NaN 0 0 Median 1.5585 2.1339 NaN 1 0 Median 11328000 2861800 8466400 1413600 0 1413600 9914700 2861800 7052900 3982 1451 4081 14282;14283;14284 21591;21592;21593 21592 3 FYDDAIVSQK PRDIDAFWLQRQLSRFYDDAIVSQKKADEV RQLSRFYDDAIVSQKKADEVLEILKTASDD R F Y Q K K 1 0 0 2 0 1 0 0 0 1 0 1 0 1 0 1 0 0 1 1 0 0 10 0 1184.5714 O75643;A4FU77 O75643 275 284 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0018997 74.173 1 2 0.9641 1.4247 40.415 3 Median 0.60545 0.75803 NaN 1 0 Median 1.0111 1.5143 8.6256 2 0 Median 34183000 19897000 14286000 17682000 12269000 5413800 16501000 7628300 8872600 3983 1206 4082 14285;14286;14287 21594;21595;21596;21597;21598 21595 5 FYEAFSK ELFSELAEDKENYKKFYEAFSKNLKLGIHE EDKENYKKFYEAFSKNLKLGIHEDSTNRRR K F Y S K N 1 0 0 0 0 0 1 0 0 0 0 1 0 2 0 1 0 0 1 0 0 0 7 0 890.41742 A0A024RD80;P08238;B4DMA2;B4DGL0;Q58FF4;Q9H6X9;A8K3W9 A0A024RD80 429 435 HSP90AB1;HSP90Bf Heat shock protein HSP 90-beta no no 2 0.047816 50.127 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20918000 0 20918000 0 0 0 20918000 0 20918000 3984 312;598 4083 14288 21599 21599 1 FYEDNGQLDDAR KATGKPHTLWVAFAKFYEDNGQLDDARVIL FAKFYEDNGQLDDARVILEKATKVNFKQVD K F Y A R V 1 1 1 3 0 1 1 1 0 0 1 0 0 1 0 0 0 0 1 0 0 0 12 0 1441.611 Q68CN2;Q71SV8;Q9HCS7 Q68CN2 255 266 DKFZp762C1015;XAB2 Pre-mRNA-splicing factor SYF1 yes no 2 0.0066691 101.3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 3985 1582 4084 14289;14290 21600;21601 21600 2 FYEEVHDLER ALKNLQVKCAQIEAKFYEEVHDLERKYAVL QIEAKFYEEVHDLERKYAVLYQPLFDKRFE K F Y E R K 0 1 0 1 0 0 3 0 1 0 1 0 0 1 0 0 0 0 1 1 0 0 10 0 1335.6095 F8W118;F8VY35;F8VV59;A0A024RBE6;F5H4R6;H0YIV4;A0A024RBB7;P55209;F8VRJ2;H0YH88;H0YHC3;F8W020;F8VXI6;F8VUX1;F8W543;B7Z9C2;F8W0J6;B7Z2V4;B7Z5H0;F8VVB5;E9PNW0;E9PJJ2;E9PS34;E9PNJ7;C9J6D1;A0A024RCC9;B7ZAK9;B7ZB83;B4DS05;Q99733;A8MXH2;E9PKT8;C9JZI7;B7ZAC7 F8W118 54 63 NAP1L1;NAP1L4 Nucleosome assembly protein 1-like 1;Nucleosome assembly protein 1-like 4 no no 2;3 2.8835E-05 115.71 7 0.71976 0.97919 11.98 7 Median 0.71976 0.97919 11.98 7 0 Median NaN NaN NaN 0 0 Median 230280000 131390000 98888000 230280000 131390000 98888000 0 0 0 3986 267;293 4085 14291;14292;14293;14294;14295;14296;14297 21602;21603;21604;21605;21606;21607;21608;21609 21609 7 FYEEVHDLERK ALKNLQVKCAQIEAKFYEEVHDLERKYAVL IEAKFYEEVHDLERKYAVLYQPLFDKRFEI K F Y R K Y 0 1 0 1 0 0 3 0 1 0 1 1 0 1 0 0 0 0 1 1 0 0 11 1 1463.7045 F8W118;F8VY35;F8VV59;A0A024RBE6;F5H4R6;H0YIV4;A0A024RBB7;P55209;F8VRJ2;H0YH88;H0YHC3;F8W020;F8VXI6;F8VUX1;F8W543;B7Z9C2;F8W0J6;B7Z2V4;B7Z5H0;F8VVB5;E9PNW0;E9PJJ2;E9PS34;E9PNJ7;C9J6D1;A0A024RCC9;B7ZAK9;B7ZB83;B4DS05;Q99733;A8MXH2;E9PKT8;C9JZI7;B7ZAC7 F8W118 54 64 NAP1L1;NAP1L4 Nucleosome assembly protein 1-like 1;Nucleosome assembly protein 1-like 4 no no 2;3 7.1676E-07 123.11 8 0.74423 0.97389 87.118 5 Median 0.74423 0.97389 87.118 5 0 Median NaN NaN NaN 0 0 Median 443630000 227340000 216290000 443630000 227340000 216290000 0 0 0 3987 267;293 4086 14298;14299;14300;14301;14302;14303;14304;14305 21610;21611;21612;21613;21614;21615;21616;21617;21618;21619;21620 21619 11 FYEQFSK ELFTELAEDKENYKKFYEQFSKNIKLGIHE EDKENYKKFYEQFSKNIKLGIHEDSQNRKK K F Y S K N 0 0 0 0 0 1 1 0 0 0 0 1 0 2 0 1 0 0 1 0 0 0 7 0 947.43888 K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q96HX7 K9JA46 437 443 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 2 0.019678 68.915 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5977100 5977100 0 5977100 5977100 0 0 0 0 3988 1155 4087 14306 21621 21621 1 FYFENLLSK PEALGNLVEGMDFHKFYFENLLSKNSKPIH GMDFHKFYFENLLSKNSKPIHTTILNPHVH K F Y S K N 0 0 1 0 0 0 1 0 0 0 2 1 0 2 0 1 0 0 1 0 0 0 9 0 1159.5914 Q5SWX3;A8K6N9;A0A0A0MS52;A0A0A0MT11;Q13555;Q8WU40;H0Y6G2;Q13280 Q5SWX3 435 443 CAMK2G Calcium/calmodulin-dependent protein kinase type II subunit gamma yes no 2 0.02567 48.423 1 0.41643 0.53417 NaN 1 Median 0.41643 0.53417 NaN 1 0 Median NaN NaN NaN 0 0 Median 3450700 2327200 1123500 3450700 2327200 1123500 0 0 0 3989 393 4088 14307 21622 21622 1 FYHEACVK SKTDVKRCVVTQCGKFYHEACVKKYPLTVF VVTQCGKFYHEACVKKYPLTVFESRGFRCP K F Y V K K 1 0 0 0 1 0 1 0 1 0 0 1 0 1 0 0 0 0 1 1 0 0 8 0 1052.475 O96028 O96028 738 745 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 2 0.013399 67.277 2 0.90456 1.1417 NaN 1 Median 0.90456 1.1417 NaN 1 0 Median NaN NaN NaN 0 0 Median 10882000 6681500 4200600 10882000 6681500 4200600 0 0 0 3990 1228 4089 14308;14309 21623;21624 21624 2 FYHLAK ______________________________ KVGKSRRDKFYHLAKETGYRSRSAFKLIQL K F Y A K E 1 0 0 0 0 0 0 0 1 0 1 1 0 1 0 0 0 0 1 0 0 0 6 0 777.41736 Q8IY81;J3KS36;J3KS74;J3QSE2;J3QRS5;J3QR05 Q8IY81 15 20 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 0.045449 74.417 1 0.78234 0.97086 NaN 1 Median 0.78234 0.97086 NaN 1 0 Median NaN NaN NaN 0 0 Median 55438000 32744000 22693000 55438000 32744000 22693000 0 0 0 3991 1628 4090 14310 21625 21625 1 FYLDSGEQVLVDVETK QIMMFKNMTPSPFLRFYLDSGEQVLVDVET YLDSGEQVLVDVETKSNKEIMEHIRKILGK R F Y T K S 0 0 0 2 0 1 2 1 0 0 2 1 0 1 0 1 1 0 1 3 0 0 16 0 1840.9095 P82663;E7EPW2 P82663 78 93 MRPS25 28S ribosomal protein S25, mitochondrial yes no 2 2.4481E-08 119.01 1 0.67863 0.89392 NaN 1 Median 0.67863 0.89392 NaN 1 0 Median NaN NaN NaN 0 0 Median 1962800 903490 1059400 1962800 903490 1059400 0 0 0 3992 1429 4091 14311 21626 21626 1 FYLDTVSALNFAAR SAHSILIANIAPERRFYLDTVSALNFAARS RFYLDTVSALNFAARSKEVINRPFTNESLQ R F Y A R S 3 1 1 1 0 0 0 0 0 0 2 0 0 2 0 1 1 0 1 1 0 0 14 0 1586.8093 Q14807;A0A024R632;B7Z9T5;H3BRB3 Q14807 351 364 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 6.9109E-27 180.07 4 2 0.74323 1.0788 11.796 5 Median 0.80952 1.0788 4.9604 3 0 Median 0.6499 1.0022 21.612 2 0 Median 93196000 55082000 38114000 50646000 29696000 20950000 42550000 25386000 17163000 3993 1497 4092 14312;14313;14314;14315;14316;14317 21627;21628;21629;21630;21631;21632;21633;21634;21635;21636 21629 10 FYLGGPTSIR MLVPIGDKPSSIADRFYLGGPTSIRGFSMH SIADRFYLGGPTSIRGFSMHSIGPQSEGDY R F Y I R G 0 1 0 0 0 0 0 2 0 1 1 0 0 1 1 1 1 0 1 0 0 0 10 0 1109.5869 Q9Y512 Q9Y512 337 346 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 2 0.0043899 99.136 1 0.41721 0.57968 NaN 1 Median 0.41721 0.57968 NaN 1 0 Median NaN NaN NaN 0 0 Median 3163900 2072900 1091000 3163900 2072900 1091000 0 0 0 3994 1827 4093 14318 21637 21637 1 FYNLVLLPR TRIFASNLKERMAQRFYNLVLLPRVRDDVA ERMAQRFYNLVLLPRVRDDVAEYKRLNFHL R F Y P R V 0 1 1 0 0 0 0 0 0 0 3 0 0 1 1 0 0 0 1 1 0 0 9 0 1133.6597 Q13895;H7BY94 Q13895 249 257 BYSL Bystin yes no 2 1.5255E-08 143.85 4 2 0.75035 1.1127 12.529 6 Median 0.82761 1.0987 15.943 4 0 Median 0.7432 1.1127 4.4656 2 0 Median 91313000 50042000 41272000 68526000 36714000 31812000 22787000 13327000 9459700 3995 1480 4094 14319;14320;14321;14322;14323;14324 21638;21639;21640;21641;21642;21643;21644;21645;21646 21641 9 FYNNVQGLVPK HGFIIRVKDYGCIVKFYNNVQGLVPKHELS CIVKFYNNVQGLVPKHELSTEYIPDPERVF K F Y P K H 0 0 2 0 0 1 0 1 0 0 1 1 0 1 1 0 0 0 1 2 0 0 11 0 1277.6768 Q14690;B4DH82;B4DES7 Q14690 561 571 PDCD11 Protein RRP5 homolog yes no 2 0.00027994 84.498 2 2 0.68331 0.93643 33.286 4 Median 0.97972 1.243 3.832 2 0 Median 0.47553 0.70067 4.7976 2 0 Median 34119000 18887000 15232000 21068000 10202000 10867000 13050000 8684900 4365500 3996 1494 4095 14325;14326;14327;14328 21647;21648;21649;21650;21651;21652 21651 6 FYPDRPHQK CFVRNLPWKIMVMPRFYPDRPHQKSVGFFL IMVMPRFYPDRPHQKSVGFFLQCNAESDST R F Y Q K S 0 1 0 1 0 1 0 0 1 0 0 1 0 1 2 0 0 0 1 0 0 0 9 1 1186.5883 Q6U8A4;Q93009;B7ZAX6;B7Z855;H3BND8;B7Z7T5;F5H2X1;B7Z842;H3BUV0;H3BTM1;H3BRA2;H3BQD1 Q6U8A4 115 123 USP7 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 7 yes no 3 0.04053 56.81 1 0.36648 0.49109 NaN 1 Median 0.36648 0.49109 NaN 1 0 Median NaN NaN NaN 0 0 Median 3037500 2226600 810930 3037500 2226600 810930 0 0 0 3997 1600 4096 14329 21653 21653 1 FYPLEIDYGQDEEAVK GNAWHSKNFTKYPKKFYPLEIDYGQDEEAV YPLEIDYGQDEEAVKKLTVNPGTKSKLPKP K F Y V K K 1 0 0 2 0 1 3 1 0 1 1 1 0 1 1 0 0 0 2 1 0 0 16 0 1914.8887 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 638 653 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 5.5199E-18 153.74 4 2 1.0706 1.3626 35.017 6 Median 1.1001 1.3994 2.8285 4 0 Median 0.44331 0.70846 2.6517 2 0 Median 316550000 177480000 139070000 193440000 93795000 99646000 123110000 83689000 39422000 3998 107 4097 14330;14331;14332;14333;14334;14335 21654;21655;21656;21657;21658;21659;21660;21661;21662;21663;21664 21657 11 FYPLEIDYGQDEEAVKK GNAWHSKNFTKYPKKFYPLEIDYGQDEEAV PLEIDYGQDEEAVKKLTVNPGTKSKLPKPV K F Y K K L 1 0 0 2 0 1 3 1 0 1 1 2 0 1 1 0 0 0 2 1 0 0 17 1 2042.9837 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 638 654 PARP1 Poly [ADP-ribose] polymerase 1 yes no 3 7.7609E-06 78.249 3 1 1.0878 1.3339 39.014 4 Median 1.0999 1.3485 1.5419 3 0 Median 0.38177 0.61545 NaN 1 0 Median 267790000 128230000 139550000 248240000 114570000 133670000 19547000 13665000 5881800 3999 107 4098 14336;14337;14338;14339 21665;21666;21667;21668;21669 21668 5 FYQGFLFSEKPEK NCAISVICCVFNELKFYQGFLFSEKPEKNL LKFYQGFLFSEKPEKNLLIFENLIDLKRRY K F Y E K N 0 0 0 0 0 1 2 1 0 0 1 2 0 3 1 1 0 0 1 0 0 0 13 1 1618.8031 P78527 P78527 1961 1973 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 0.0011311 110.08 3 1 0.3899 0.48337 29.567 4 Median 0.38015 0.46512 10.693 3 0 Median 0.56015 0.80283 NaN 1 0 Median 37769000 27131000 10638000 34730000 25206000 9523400 3039600 1924700 1114900 4000 1427 4099 14340;14341;14342;14343 21670;21671;21672;21673;21674 21670 5 FYQVPVPLPDRR CEPMIGLVPILKGGRFYQVPVPLPDRRRRF GGRFYQVPVPLPDRRRRFLAMKWMITECRD R F Y R R R 0 2 0 1 0 1 0 0 0 0 1 0 0 1 3 0 0 0 1 2 0 0 12 1 1485.8092 A0A024R8L0;J3QLS3;Q9Y2R9;J3QQS1;J3KSI8 A0A024R8L0 167 178 MRPS7 28S ribosomal protein S7, mitochondrial yes no 3 0.018949 35.737 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4001 199 4100 14344 21675 21675 1 FYSFLVLK LELCRNTNRKQAAAKFYSFLVLKKQQAIEL RKQAAAKFYSFLVLKKQQAIELTQEEPYSD K F Y L K K 0 0 0 0 0 0 0 0 0 0 2 1 0 2 0 1 0 0 1 1 0 0 8 0 1015.5743 A0A024R9J0;O60216;B3KUT8;E5RG18;E5RI01;E5RFZ5;F6KSS9;Q9H4I0 A0A024R9J0 597 604 RAD21;RAD21L;RAD21L1 Double-strand-break repair protein rad21 homolog;Double-strand-break repair protein rad21-like protein 1 yes no 2 0.014962 97.602 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1833500 1833500 0 1833500 1833500 0 0 0 0 4002 223 4101 14345 21676 21676 1 FYTEDSPGLK SAGRTTSAGTGRMWRFYTEDSPGLKVGPVP GRMWRFYTEDSPGLKVGPVPVLVMSLLFIA R F Y L K V 0 0 0 1 0 0 1 1 0 0 1 1 0 1 1 1 1 0 1 0 0 0 10 0 1155.5448 Q53FA5;P60468;S4R3B5 Q53FA5 58 67 SEC61B Protein transport protein Sec61 subunit beta yes no 2 0.0031692 67.993 4 0.61641 0.78288 8.2982 2 Median 0.61641 0.78288 8.2982 2 0 Median NaN NaN NaN 0 0 Median 26685000 21045000 5639100 26685000 21045000 5639100 0 0 0 4003 1387 4102 14346;14347;14348;14349 21677;21678;21679;21680;21681 21679 5 FYTHLYK ILSGQGDVLNIDPLKFYTHLYKTLFKLHAG VLNIDPLKFYTHLYKTLFKLHAGATNEGVE K F Y Y K T 0 0 0 0 0 0 0 0 1 0 1 1 0 1 0 0 1 0 2 0 0 0 7 0 970.49125 A8K905;Q8WTT2;B4DXL4 A8K905 580 586 NOC3L Nucleolar complex protein 3 homolog yes no 2 0.035388 57.811 1 0.93672 1.2344 NaN 1 Median 0.93672 1.2344 NaN 1 0 Median NaN NaN NaN 0 0 Median 5398100 2523800 2874300 5398100 2523800 2874300 0 0 0 4004 643 4103 14350 21682 21682 1 FYTLIPHDFGMK SQGSSDSQILDLSNRFYTLIPHDFGMKKPP SNRFYTLIPHDFGMKKPPLLNNADSVQAKV R F Y M K K 0 0 0 1 0 0 0 1 1 1 1 1 1 2 1 0 1 0 1 0 0 0 12 0 1467.7221 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 736 747 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2;3 0.001108 57.55 1 1 0.60685 0.83753 54.196 2 Median 0.97275 1.2287 NaN 1 0 Median 0.37859 0.57091 NaN 1 0 Median 23863000 14773000 9090200 7386900 3378700 4008200 16476000 11394000 5082000 4005 107 4104;4105 14351;14352 21683;21684;21685 21685 60 3 FYVTTCVGK NDIPHVVRFSALKRRFYVTTCVGKSFHTYD SALKRRFYVTTCVGKSFHTYDVQKLSLVAV R F Y G K S 0 0 0 0 1 0 0 1 0 0 0 1 0 1 0 0 2 0 1 2 0 0 9 0 1073.5216 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 40 48 WDR36 WD repeat-containing protein 36 yes no 2 0.0043696 77.318 4 0.88729 1.1086 1.9189 4 Median 0.88729 1.1086 1.9189 4 0 Median NaN NaN NaN 0 0 Median 65914000 33132000 32781000 65914000 33132000 32781000 0 0 0 4006 404 4106 14353;14354;14355;14356 21686;21687;21688;21689;21690;21691 21688 6 FYYDGK PVFAPPYEPLPENVKFYYDGKVMKLSPKAE YEPLPENVKFYYDGKVMKLSPKAEEVATFF K F Y G K V 0 0 0 1 0 0 0 1 0 0 0 1 0 1 0 0 0 0 2 0 0 0 6 0 791.34901 P11387;B9EG90 P11387 240 245 TOP1 DNA topoisomerase 1 yes no 2 0.048634 72.021 1 0.80243 1.2332 NaN 1 Median NaN NaN NaN 0 0 Median 0.80243 1.2332 NaN 1 0 Median 21941000 12381000 9560000 0 0 0 21941000 12381000 9560000 4007 1255 4107 14357 21692 21692 1 GAAAAAAASGAAGGGGGGAGAGAPGGGR ______________________________ GGGGGAGAGAPGGGRLLLSTSLDAKDELEE K G A G R L 12 1 0 0 0 0 0 13 0 0 0 0 0 0 1 1 0 0 0 0 0 0 28 0 1951.9209 Q68E01 Q68E01 8 35 INTS3 Integrator complex subunit 3 yes yes 2 1.1513E-42 232.74 4 2 1.209 1.5765 42.592 4 Linear 0.43117 0.579 2.3323 2 0 Median 0.9157 1.2075 5.8664 2 0 Median 18829000 12803000 6025900 10007000 7966100 2040900 8821600 4836600 3985000 4008 1584 4108 14358;14359;14360;14361;14362;14363 21693;21694;21695;21696;21697;21698;21699;21700 21694 8 GAAGRPLELSDFR STPTGISASCRRPIKGAAGRPLELSDFRME IKGAAGRPLELSDFRMEESFSSKYVPKYVP K G A F R M 2 2 0 1 0 0 1 2 0 0 2 0 0 1 1 1 0 0 0 0 0 0 13 1 1387.7208 A0A024RBE7;P42167;G5E972;A0A024RBH7;Q59G12;H0YJH7;Q9P1N8 A0A024RBE7 369 381 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 3 0.00018267 62.042 3 2 0.44715 0.60289 18.005 5 Median 0.44359 0.59471 1.7196 3 0 Plateau 0.51602 0.8175 5.4355 2 0 Median 299550000 210390000 89155000 177860000 126100000 51762000 121690000 84294000 37392000 4009 270 4109 14364;14365;14366;14367;14368 21701;21702;21703;21704;21705;21706;21707 21703 7 GAANDSTQFTVAGR QLITVREEAWKTRGRGAANDSTQFTVAGRM RGAANDSTQFTVAGRMVKKGLASPTAITPV R G A G R M 3 1 1 1 0 1 0 2 0 0 0 0 0 1 0 1 2 0 0 1 0 0 14 0 1393.6586 O95425;B4E3N7;B4E3H1;A0A0J9YWY6;Q659E9 O95425 1204 1217 SVIL;DKFZp586H1823 Supervillin yes no 2 0.00023564 68.069 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1924500 0 1924500 1924500 0 1924500 0 0 0 4010 1220 4110 14369;14370 21708;21709 21708 2 GAAPNVVYTYTGK YMDTLPPTVGDDVGKGAAPNVVYTYTGKRI GKGAAPNVVYTYTGKRIALYIGNLTWWTTD K G A G K R 2 0 1 0 0 0 0 2 0 0 0 1 0 0 1 0 2 0 2 2 0 0 13 0 1339.6772 F8WJN3;Q16630;F8W084 F8WJN3 67 79 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 2 5.4562E-05 123.51 1 0.32772 0.42179 NaN 1 Median 0.32772 0.42179 NaN 1 0 Median NaN NaN NaN 0 0 Median 3409600 2524700 884890 3409600 2524700 884890 0 0 0 4011 1075 4111 14371 21710 21710 1 GADCCVLVFDVTAPNTFK AGQERFQSLGVAFYRGADCCVLVFDVTAPN CCVLVFDVTAPNTFKTLDSWRDEFLIQASP R G A F K T 2 0 1 2 2 0 0 1 0 0 1 1 0 2 1 0 2 0 0 3 0 0 18 0 2012.9336 A0A158RFU6;P51149;C9J592;B4DPH9 A0A158RFU6 80 97 RAB7A Ras-related protein Rab-7a yes no 2 1.41E-05 60.628 2 0.73282 0.90013 NaN 1 Median 0.73282 0.90013 NaN 1 0 Median NaN NaN NaN 0 0 Median 6928700 5478800 1449900 6928700 5478800 1449900 0 0 0 4012 515 4112 14372;14373 21711;21712 21711 2 GADFLVTEVENGGSLGSK IYVDDGLISLQVKQKGADFLVTEVENGGSL FLVTEVENGGSLGSKKGVNLPGAAVDLPAV K G A S K K 1 0 1 1 0 0 2 4 0 0 2 1 0 1 0 2 1 0 0 2 0 0 18 0 1778.8687 V9HWB8;P14618;B4DNK4;H3BTN5;A0A024R5Z9;B4DRT3;A0A024R609;H3BQ34;Q8WUW7 V9HWB8 189 206 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 2 1.959E-09 89.959 2 1 2.332 3.2886 114.87 2 Median 1.1141 1.4597 NaN 1 0 Median 4.8812 7.4089 NaN 1 0 Median 18098000 8666200 9431400 8078100 6654800 1423300 10020000 2011400 8008100 4013 1267 4113 14374;14375;14376 21713;21714;21715 21714 3 GADSELSTVPSVTK HPKKASFQKLNGISKGADSELSTVPSVTKT KGADSELSTVPSVTKTQASSSFQDSSQPAG K G A T K T 1 0 0 1 0 0 1 1 0 0 1 1 0 0 1 3 2 0 0 2 0 0 14 0 1389.6987 P46087 P46087 656 669 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 3.0641E-23 172.17 3 0.74548 0.95401 5.741 3 Median 0.74548 0.95401 5.741 3 0 Median NaN NaN NaN 0 0 Median 156780000 88048000 68736000 156780000 88048000 68736000 0 0 0 4014 1343 4114 14377;14378;14379 21716;21717;21718;21719;21720;21721;21722 21720 7 GADVFLEALAR TLYFFIAGRYEFSNKGADVFLEALARLNYL FSNKGADVFLEALARLNYLLRVNGSEQTVV K G A A R L 3 1 0 1 0 0 1 1 0 0 2 0 0 1 0 0 0 0 0 1 0 0 11 0 1160.619 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6 P13807 338 348 GYS1 Glycogen [starch] synthase, muscle yes no 2 6.7013E-05 120.31 3 1 0.88865 1.2163 12.802 3 Median 0.88865 1.2163 12.802 3 0 Median NaN NaN NaN 0 0 Median 64413000 45355000 19058000 41821000 22763000 19058000 22592000 22592000 0 4015 1265 4115 14380;14381;14382;14383 21723;21724;21725;21726 21725 4 GAEAANVTGPGGVPVQGSK GDGETVEFDVVEGEKGAEAANVTGPGGVPV ANVTGPGGVPVQGSKYAADRNHYRRYPRRR K G A S K Y 3 0 1 0 0 1 1 5 0 0 0 1 0 0 2 1 1 0 0 3 0 0 19 0 1694.8588 H0Y449;P67809;Q6PKI6;Q7KZ24 H0Y449 169 187 YBX1 Nuclease-sensitive element-binding protein 1 yes no 2 3.1356E-56 192.4 4 1 1.0396 1.2828 1.9653 4 Median 1.0473 1.2904 2.1782 3 0 Median 0.8432 1.2753 NaN 1 0 Median 80891000 39315000 41576000 64612000 30339000 34273000 16280000 8975900 7303600 4016 1089 4116 14384;14385;14386;14387;14388 21727;21728;21729;21730;21731;21732;21733;21734;21735 21727 8 GAEADQIIEYLK ______________________________ EQKGAEADQIIEYLKQQVSLLKEKAILQAT K G A L K Q 2 0 0 1 0 1 2 1 0 2 1 1 0 0 0 0 0 0 1 0 0 0 12 0 1348.6874 B4DNK3;Q12904;D6R937 B4DNK3 15 26 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes no 2 7.7214E-05 129.7 4 0.5272 0.66851 16.755 3 Median 0.5272 0.66851 16.755 3 0 Median NaN NaN NaN 0 0 Median 16785000 11346000 5439600 16785000 11346000 5439600 0 0 0 4017 837 4117 14389;14390;14391;14392 21736;21737;21738;21739;21740 21737 5 GAEGLGEEGGLHQDPLR VTDGHHASSRKRRRKGAEGLGEEGGLHQDP EGLGEEGGLHQDPLRHSCSPMGDGDPEAME K G A L R H 1 1 0 1 0 1 3 5 1 0 3 0 0 0 1 0 0 0 0 0 0 0 17 0 1733.8333 A0A024R8V6;Q9P275;A0A075B784;B3KMW2 A0A024R8V6 919 935 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 3 0.026748 19.036 1 1.3208 1.8656 NaN 1 Median NaN NaN NaN 0 0 Median 1.3208 1.8656 NaN 1 0 Median 7588800 3501500 4087300 0 0 0 7588800 3501500 4087300 4018 205 4118 14393 21741 21741 1 GAEHITTYTFNTHK NRHFIVPASRFKLLKGAEHITTYTFNTHKA KGAEHITTYTFNTHKAQHTFCKRCGVQSFY K G A H K A 1 0 1 0 0 0 1 1 2 1 0 1 0 1 0 0 4 0 1 0 0 0 14 0 1618.774 Q7Z7K6 Q7Z7K6 197 210 CENPV Centromere protein V yes yes 2;3 7.677E-46 232.56 4 1.194 1.5018 6.8978 4 Median 1.194 1.5018 6.8978 4 0 Median NaN NaN NaN 0 0 Median 280610000 127570000 153050000 280610000 127570000 153050000 0 0 0 4019 1619 4119 14394;14395;14396;14397 21742;21743;21744;21745;21746;21747;21748 21747 7 GAETELVR TKEKRGPGRKARKQKGAETELVRFLPAVSD RKARKQKGAETELVRFLPAVSDENSKRLSS K G A V R F 1 1 0 0 0 0 2 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 8 0 873.4556 P46087;F5H5X6;F5GWB7;F5H709;F5H359;F5H8G6 P46087 23 30 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2 0.0080124 79.116 2 0.49006 0.76479 4.0851 2 Median NaN NaN NaN 0 0 Median 0.49006 0.76479 4.0851 2 0 Median 51553000 34011000 17542000 0 0 0 51553000 34011000 17542000 4020 1343 4120 14398;14399 21749;21750;21751 21749 3 GAFGKPQGTVAR MLSCAGADRLQTGMRGAFGKPQGTVARVHI GMRGAFGKPQGTVARVHIGQVIMSIRTKLQ R G A A R V 2 1 0 0 0 1 0 3 0 0 0 1 0 1 1 0 1 0 0 1 0 0 12 1 1187.6411 F8W7C6;A0A087WV22;H7C123;H7C2C5;P27635;X1WI28;X5D2T3;Q96L21 P27635 117 128 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like no no 2;3 2.4184E-10 135.8 9 3 0.77029 1.0156 9.9205 12 Median 0.80272 1.0186 9.7056 9 0 Median 0.57197 0.96696 8.9572 3 0 Median 2049400000 1206000000 843380000 1657600000 946150000 711490000 391770000 259880000 131890000 4021 1301;1071 4121 14400;14401;14402;14403;14404;14405;14406;14407;14408;14409;14410;14411 21752;21753;21754;21755;21756;21757;21758;21759;21760;21761;21762;21763;21764;21765;21766;21767;21768;21769 21764 18 GAFIDQSQSLNIHIAEPNYGK WEISQKTVLKMAAERGAFIDQSQSLNIHIA SQSLNIHIAEPNYGKLTSMHFYGWKQGLKT R G A G K L 2 0 2 1 0 2 1 2 1 3 1 1 0 1 1 2 0 0 1 0 0 0 21 0 2301.139 B4E0I8;B4DNN4;P23921;B4DS95;E9PL69;B4DXB0;B4DXD1 B4E0I8 602 622 RRM1 Ribonucleoside-diphosphate reductase;Ribonucleoside-diphosphate reductase large subunit yes no 3 0.026041 61.862 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4418600 4418600 0 4418600 4418600 0 0 0 0 4022 839 4122 14412 21770 21770 1 GAFIQLLR PTLAFHASLTNPFGKGAFIQLLRQFGKLHT LTNPFGKGAFIQLLRQFGKLHTDKKQISVG K G A L R Q 1 1 0 0 0 1 0 1 0 1 2 0 0 1 0 0 0 0 0 0 0 0 8 0 916.54944 Q5T0F3;Q13823;B4DPI9;H0YG10 Q5T0F3 292 299 GNL2 Nucleolar GTP-binding protein 2 yes no 2 0.0019569 117.56 4 1 0.65983 0.89964 12.015 5 Median 0.69077 0.94311 8.9233 4 0 Median 0.5109 0.76377 NaN 1 0 Median 40477000 23693000 16784000 33533000 19357000 14177000 6943600 4336300 2607300 4023 1477 4123 14413;14414;14415;14416;14417 21771;21772;21773;21774;21775;21776;21777;21778 21774 8 GAGDGSDEEVDGKADGAEAKPAE RGDLPFVVPRRMARKGAGDGSDEEVDGKAD EVDGKADGAEAKPAE_______________ K G A A E - 5 0 0 4 0 0 4 5 0 0 0 2 0 0 1 1 0 0 0 1 0 0 23 2 2173.9247 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1938 1960 MYH9;FLJ00279 Myosin-9 no no 3 4.4063E-12 73.294 4 1.4148 1.7376 11.739 4 Median 1.4148 1.7376 11.739 4 0 Median NaN NaN NaN 0 0 Median 15032000 6821300 8211100 15032000 6821300 8211100 0 0 0 4024 61;490 4124 14418;14419;14420;14421 21779;21780;21781;21782;21783;21784;21785;21786 21783 8 GAGIGGLGITVEGPSESK EAFTNKPNVFTVVTRGAGIGGLGITVEGPS IGGLGITVEGPSESKINCRDNKDGSCSAEY R G A S K I 1 0 0 0 0 0 2 6 0 2 1 1 0 0 1 2 1 0 0 1 0 0 18 0 1627.8417 O75369;A0A024R321;Q68CT4;E7EN95 O75369 1355 1372 FLNB;DKFZp686A1668 Filamin-B yes no 2 4.0843E-17 107.93 4 0.69328 0.85636 20.315 3 Median 0.69328 0.85636 20.315 3 0 Median NaN NaN NaN 0 0 Median 29450000 18124000 11326000 29450000 18124000 11326000 0 0 0 4025 1199 4125 14422;14423;14424;14425 21787;21788;21789;21790;21791;21792 21791 6 GAGLGFSTAPNK LQRDYDRAMSWKYSRGAGLGFSTAPNKIFY YSRGAGLGFSTAPNKIFYIDRNASKSVKLE R G A N K I 2 0 1 0 0 0 0 3 0 0 1 1 0 1 1 1 1 0 0 0 0 0 12 0 1118.572 Q1ED39;H3BNU8 Q1ED39 431 442 KNOP1 Lysine-rich nucleolar protein 1 yes no 2 0.0015516 61.65 1 1.5245 1.9328 NaN 1 Median 1.5245 1.9328 NaN 1 0 Median NaN NaN NaN 0 0 Median 7644900 2372700 5272200 7644900 2372700 5272200 0 0 0 4026 1525 4126 14426 21793 21793 1 GAGSYTIMVLFADQATPTSPIR IRNDNDTFTVKYTPRGAGSYTIMVLFADQA MVLFADQATPTSPIRVKVEPSHDASKVKAE R G A I R V 3 1 0 1 0 1 0 2 0 2 1 0 1 1 2 2 3 0 1 1 0 0 22 0 2295.1569 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 842 863 FLNA Filamin-A yes no 2 2.2076E-08 105.17 2 1.1418 1.5674 NaN 1 Median 1.1418 1.5674 NaN 1 0 Median NaN NaN NaN 0 0 Median 2419200 1590300 828880 2419200 1590300 828880 0 0 0 4027 1287 4127;4128 14427;14428 21794;21795;21796;21797 21796 539 4 GAGTGGLGLAVEGPSEAK SGTTNKPNKFTVETRGAGTGGLGLAVEGPS TGGLGLAVEGPSEAKMSCMDNKDGSCSVEY R G A A K M 3 0 0 0 0 0 2 6 0 0 2 1 0 0 1 1 1 0 0 1 0 0 18 0 1569.7999 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1382 1399 FLNA;FLJ00119 Filamin-A yes no 2 1.2817E-17 134.04 4 2 1.005 1.2696 47.986 6 Median 0.93984 1.1749 7.675 4 0 Median 2.0028 2.9938 10.799 2 0 Median 111900000 51928000 59969000 96772000 47041000 49732000 15124000 4887200 10237000 4028 1287 4129 14429;14430;14431;14432;14433;14434 21798;21799;21800;21801;21802;21803;21804;21805;21806 21804 9 GAGTGGLGLTVEGPCEAK GGLVGKPAEFTIDTKGAGTGGLGLTVEGPC TGGLGLTVEGPCEAKIECSDNGDGTCSVSY K G A A K I 2 0 0 0 1 0 2 6 0 0 2 1 0 0 1 0 2 0 0 1 0 0 18 0 1672.809 O75369;A0A024R321;Q68CT4;E7EN95;Q14315 O75369 1067 1084 FLNB;DKFZp686A1668;FLNC Filamin-B;Filamin-C no no 2 2.2366E-08 91.858 3 1.5598 2.0297 42.323 3 Plateau 1.5598 2.0297 42.323 3 0 Plateau NaN NaN NaN 0 0 Median 11897000 4879600 7017300 11897000 4879600 7017300 0 0 0 4029 1199;1486 4130 14435;14436;14437 21807;21808;21809 21809 3 GAHGIIVVYDVTDQESFNNVK AGQERFRTITSSYYRGAHGIIVVYDVTDQE VVYDVTDQESFNNVKQWLQEIDRYASENVN R G A V K Q 1 0 2 2 0 1 1 2 1 2 0 1 0 1 0 1 1 0 1 4 0 0 21 0 2304.1386 Q5U0I6;P62820;E7END7 Q5U0I6 83 103 RAB1A Ras-related protein Rab-1A yes no 3 0.013209 20.439 1 0.87339 1.0884 NaN 1 Median 0.87339 1.0884 NaN 1 0 Median NaN NaN NaN 0 0 Median 33585000 19519000 14066000 33585000 19519000 14066000 0 0 0 4030 1412 4131 14438 21810 21810 1 GAIILSSLLQSCDLEVANK HVGMKNLKSWASVNRGAIILSSLLQSCDLE LSSLLQSCDLEVANKVKAALKSLIPTLEKT R G A N K V 2 0 1 1 1 1 1 1 0 2 4 1 0 0 0 3 0 0 0 1 0 0 19 0 2030.0718 Q15397;B2RDG4 Q15397 599 617 KIAA0020 Pumilio domain-containing protein KIAA0020 yes no 2 5.2484E-97 251.3 4 1 0.73496 0.92796 40.66 5 Median 0.74082 0.94297 5.3395 4 0 Median 0.26105 0.38448 NaN 1 0 Median 46051000 27575000 18476000 37604000 21087000 16517000 8446500 6487700 1958800 4031 1511 4132 14439;14440;14441;14442;14443 21811;21812;21813;21814;21815;21816;21817;21818;21819 21811 9 GALALAQAVQR AFDAVKCTHWAEGGKGALALAQAVQRAAQA EGGKGALALAQAVQRAAQAPSSFQLLYDLK K G A Q R A 4 1 0 0 0 2 0 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1096.6353 A0A024R652;F5H2F4;B7Z809;P11586 A0A024R652 794 804 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.0089608 50.607 1 0.55292 0.76671 NaN 1 Median 0.55292 0.76671 NaN 1 0 Median NaN NaN NaN 0 0 Median 4120900 2870600 1250300 4120900 2870600 1250300 0 0 0 4032 154 4133 14444 21820 21820 1 GALALEEK ERDELADEIANSSGKGALALEEKRRLEARI IANSSGKGALALEEKRRLEARIAQLEEELE K G A E K R 2 0 0 0 0 0 2 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 0 829.45453 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1717 1724 MYH9;FLJ00279 Myosin-9 no no 1;2 0.011566 113.41 5 1 1.0621 1.3868 69.046 6 Median 1.0337 1.3464 10.599 5 0 Median 4.6465 7.0654 NaN 1 0 Median 286510000 141940000 144560000 275020000 139780000 135240000 11484000 2161300 9323200 4033 61;490 4134 14445;14446;14447;14448;14449;14450 21821;21822;21823;21824;21825;21826;21827 21823 7 GALINVPPPFLGLPR GQRHGLEAISIMDSRGALINVPPPFLGLPR GALINVPPPFLGLPRFEARKAVLVALKERG R G A P R F 1 1 1 0 0 0 0 2 0 1 3 0 0 1 4 0 0 0 0 1 0 0 15 0 1559.9188 A0A024RCN6;P26640;A0A140T936 A0A024RCN6 619 633 VARS Valine--tRNA ligase yes no 2 1.7711E-05 79.148 3 0.33513 0.44731 10.679 3 Plateau 0.33513 0.44731 10.679 3 0 Plateau NaN NaN NaN 0 0 Median 14254000 9991200 4262900 14254000 9991200 4262900 0 0 0 4034 297 4135 14451;14452;14453 21828;21829;21830;21831 21831 4 GALQNIIPASTGAAK KTVDGPSGKLWRDGRGALQNIIPASTGAAK GALQNIIPASTGAAKAVGKVIPELNGKLTG R G A A K A 4 0 1 0 0 1 0 2 0 2 1 1 0 0 1 1 1 0 0 0 0 0 15 0 1410.7831 V9HVZ4;P04406;Q2TSD0;E7EUT5;Q0QET7;A4UCT1;Q5ZEY3 V9HVZ4 201 215 HEL-S-162eP;GAPDH;GAPD Glyceraldehyde-3-phosphate dehydrogenase yes no 2 1.2097E-14 155.33 4 1 0.64929 0.82429 96.39 5 Median 0.6402 0.81808 3.4064 4 0 Median 4.449 7.1287 NaN 1 0 Median 437660000 196230000 241420000 277490000 164610000 112870000 160170000 31623000 128550000 4035 1231 4136 14454;14455;14456;14457;14458 21832;21833;21834;21835;21836;21837;21838;21839;21840 21832 9 GALTGGYYDTR TMDCITLEGDQVSHRGALTGGYYDTRKSRL VSHRGALTGGYYDTRKSRLELQKDVRKAEE R G A T R K 1 1 0 1 0 0 0 3 0 0 1 0 0 0 0 0 2 0 2 0 0 0 11 0 1172.5462 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 662 672 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.0073028 52.579 2 0.86095 1.237 8.0046 2 Median NaN NaN NaN 0 0 Median 0.86095 1.237 8.0046 2 0 Median 14665000 7716700 6948500 0 0 0 14665000 7716700 6948500 4036 663 4137 14459;14460 21841;21842 21841 2 GALTVGITNTVGSSISR ETADTLMGLRYCKERGALTVGITNTVGSSI LTVGITNTVGSSISRETDCGVHINAGPEIG R G A S R E 1 1 1 0 0 0 0 3 0 2 1 0 0 0 0 3 3 0 0 2 0 0 17 0 1631.8842 Q06210 Q06210 458 474 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 1.9809E-07 110.98 3 0.64623 0.88647 38.185 2 Median 0.64623 0.88647 38.185 2 0 Median NaN NaN NaN 0 0 Median 11782000 8601600 3180600 11782000 8601600 3180600 0 0 0 4037 1445 4138 14461;14462;14463 21843;21844;21845;21846 21845 3 GANIQLLDLPGIIEGAAQGK EFTTLTCIPGVIEYKGANIQLLDLPGIIEG LLDLPGIIEGAAQGKGRGRQVIA_______ K G A G K G 3 0 1 1 0 2 1 4 0 3 3 1 0 0 1 0 0 0 0 0 0 0 20 0 1977.0895 J3QR71;J3QRI9;J3QKW7;A8MZF9;P55039;B4DMP8 J3QR71 131 150 DRG2 Developmentally-regulated GTP-binding protein 2 yes no 2 0.022754 32.068 1 0.63251 0.81685 NaN 1 Median 0.63251 0.81685 NaN 1 0 Median NaN NaN NaN 0 0 Median 5924000 3622200 2301700 5924000 3622200 2301700 0 0 0 4038 661 4139 14464 21847 21847 0 GAPAAATAPAPTAHK FKLNRKKLEGGGERRGAPAAATAPAPTAHK GAPAAATAPAPTAHKAKKAAPGAAGSRRAD R G A H K A 7 0 0 0 0 0 0 1 1 0 0 1 0 0 3 0 2 0 0 0 0 0 15 0 1330.6993 Q92522 Q92522 129 143 H1FX Histone H1x yes yes 2;3 3.7218E-46 218.07 8 3 0.71535 0.9662 3.946 11 Median 0.73959 0.96132 4.2673 8 0 Median 0.61125 0.97952 3.7524 3 0 Median 1256400000 733870000 522490000 853860000 484750000 369110000 402510000 249120000 153380000 4039 1671 4140 14465;14466;14467;14468;14469;14470;14471;14472;14473;14474;14475 21848;21849;21850;21851;21852;21853;21854;21855;21856;21857;21858;21859;21860;21861;21862;21863;21864;21865;21866;21867;21868 21857 21 GAPGQPGTILR ATGHGQQGVTQVVLKGAPGQPGTILRTVPM VVLKGAPGQPGTILRTVPMGGVRLVTPVTV K G A L R T 1 1 0 0 0 1 0 3 0 1 1 0 0 0 2 0 1 0 0 0 0 0 11 0 1065.5931 A6NEM2;P51610 A6NEM2 837 847 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 0.00098238 74.464 3 2 0.92114 1.2479 22.723 5 Median 0.78569 1.0718 15.352 3 0 Median 1.0842 1.5224 10.4 2 0 Median 31550000 15146000 16404000 19413000 9629800 9782900 12137000 5516600 6620600 4040 564 4141 14476;14477;14478;14479;14480 21869;21870;21871;21872;21873;21874 21871 6 GAPPSSNIEDFHGLLPK GPGPLQERSLFEKKRGAPPSSNIEDFHGLL PPSSNIEDFHGLLPKGYPHLCSICDLPVHS R G A P K G 1 0 1 1 0 0 1 2 1 1 2 1 0 1 3 2 0 0 0 0 0 0 17 0 1777.8999 A0A0R4J2E8;A8MXP9;P43243;D6REM6;Q68D11;D6R991;H0Y8T4 A0A0R4J2E8 271 287 MATR3;DKFZp686K23100 Matrin-3 yes no 3 8.0966E-06 62.203 3 2 0.4208 0.51166 122.71 5 Median 0.39152 0.48882 11.277 3 0 Median 2.8994 4.3876 2.3873 2 0 Median 120310000 70180000 50135000 90474000 62559000 27914000 29841000 7620600 22220000 4041 445 4142 14481;14482;14483;14484;14485 21875;21876;21877;21878;21879;21880;21881;21882;21883;21884;21885 21878 11 GAPVGGHILSYLLEK SSRFGKYMDVQFDFKGAPVGGHILSYLLEK GAPVGGHILSYLLEKSRVVHQNHGERNFHI K G A E K S 1 0 0 0 0 0 1 3 1 1 3 1 0 0 1 1 0 0 1 1 0 0 15 0 1552.8613 F5H6E2;B7Z3E5;O00159;D3DTH7;B7Z9C0;I3L204 F5H6E2 186 200 MYO1C Unconventional myosin-Ic yes no 2;3 1.3892E-14 153.74 6 3 0.7372 0.93555 83.701 8 Median 0.72025 0.91726 10.139 6 0 Median 3.6669 5.4752 46.417 2 0 Median 169990000 90577000 79410000 150710000 87190000 63516000 19281000 3387100 15894000 4042 905 4143 14486;14487;14488;14489;14490;14491;14492;14493;14494 21886;21887;21888;21889;21890;21891;21892;21893;21894;21895;21896;21897;21898;21899 21889 14 GAQAAIVVYDITNEESFAR AGQEGYHSLAPMYYRGAQAAIVVYDITNEE AIVVYDITNEESFARAKNWVKELQRQASPN R G A A R A 4 1 1 1 0 1 2 1 0 2 0 0 0 1 0 1 1 0 1 2 0 0 19 0 2053.0116 A0A0A1HAN9;A0A024R2K1;P20339 A0A0A1HAN9 92 110 RAB5A Ras-related protein Rab-5A yes no 2 3.0783E-06 63.76 1 0.57665 0.78473 NaN 1 Median 0.57665 0.78473 NaN 1 0 Median NaN NaN NaN 0 0 Median 2445900 1658900 786990 2445900 1658900 786990 0 0 0 4043 86 4144 14495 21900 21900 1 GAQAAIVVYDITNTDTFAR AGQERYHSLAPMYYRGAQAAIVVYDITNTD AIVVYDITNTDTFARAKNWVKELQRQASPN R G A A R A 4 1 1 2 0 1 0 1 0 2 0 0 0 1 0 0 3 0 1 2 0 0 19 0 2025.0167 A0A024R1U4;P51148;K7ERI8;K7ERQ8;F8VVK3;K7ENY4 A0A024R1U4 93 111 RAB5C Ras-related protein Rab-5C yes no 2 2.3568E-09 80.469 2 0.63206 0.87251 NaN 1 Median 0.63206 0.87251 NaN 1 0 Median NaN NaN NaN 0 0 Median 5640800 2943300 2697400 5640800 2943300 2697400 0 0 0 4044 71 4145 14496;14497 21901;21902 21902 2 GAQYQPILR SYNGEPQSWFQRQLRGAQYQPILRDHICKD FQRQLRGAQYQPILRDHICKDMSALVAARM R G A L R D 1 1 0 0 0 2 0 1 0 1 1 0 0 0 1 0 0 0 1 0 0 0 9 0 1044.5716 A0A024R7E3;P26358;Q59FP7;B3KVA0;K7ENW7;I6L9H2 A0A024R7E3 1464 1472 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 no no 2 0.0060109 71.342 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2547900 2547900 0 0 0 0 2547900 2547900 0 4045 176;1129 4146 14498 21903 21903 1 GASFVTSTNPR QAKLTTTGQVTSPVKGASFVTSTNPRKFSG SPVKGASFVTSTNPRKFSGFSAKPNNSGEA K G A P R K 1 1 1 0 0 0 0 1 0 0 0 0 0 1 1 2 2 0 0 1 0 0 11 0 1135.5622 P49916;K7ERZ5;K7ENR9;Q96DF0 P49916 214 224 LIG3 DNA ligase 3 yes no 2 0.0015726 66.962 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4046 1356 4147 14499 21904 21904 1 GASGPQVGNALGSLEPLR LQFRAVCARGRGGARGASGPQVGNALGSLE GPQVGNALGSLEPLRWMLRSPFDRNVPVNL R G A L R W 2 1 1 0 0 1 1 4 0 0 3 0 0 0 2 2 0 0 0 1 0 0 18 0 1721.906 Q9H9F9 Q9H9F9 74 91 ACTR5 Actin-related protein 5 yes yes 2 1.7683E-30 127.76 4 1 0.63306 0.88861 14.097 5 Median 0.6257 0.87962 13.167 4 0 Median 0.77293 1.0686 NaN 1 0 Median 30827000 17641000 13186000 20492000 11842000 8650000 10335000 5798500 4536300 4047 1745 4148 14500;14501;14502;14503;14504 21905;21906;21907;21908;21909;21910;21911;21912;21913 21910 9 GASGSFVVVQK KRELNRGVIKQVKGKGASGSFVVVQKSRKT VKGKGASGSFVVVQKSRKTPQKSRNRKNRS K G A Q K S 1 0 0 0 0 1 0 2 0 0 0 1 0 1 0 2 0 0 0 3 0 0 11 0 1077.5819 Q5SSJ5;X6RGJ2;Q5SWC8 Q5SSJ5 223 233 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 4.3366E-08 149.19 4 2 0.55018 0.82244 9.8772 5 Median 0.68518 0.9002 13.603 3 0 Plateau 0.52324 0.82817 0.98191 2 0 Median 565130000 340060000 225070000 362610000 209530000 153070000 202530000 130530000 72001000 4048 1565 4149 14505;14506;14507;14508;14509;14510 21914;21915;21916;21917;21918;21919;21920;21921;21922 21919 9 GASGTFQLK QRAVERGQLEQITGKGASGTFQLKKSGEKP EQITGKGASGTFQLKKSGEKPLLGGSLMEY K G A L K K 1 0 0 0 0 1 0 2 0 0 1 1 0 1 0 1 1 0 0 0 0 0 9 0 907.47633 Q5SSJ5;B0QZK4 Q5SSJ5 321 329 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 4.3406E-05 121.99 3 2 0.59182 0.75318 5.5333 5 Median 0.60597 0.7751 5.0354 3 0 Median 0.46144 0.73 2.6413 2 0 Median 396810000 258010000 138800000 168980000 103610000 65368000 227830000 154400000 73431000 4049 1565 4150 14511;14512;14513;14514;14515 21923;21924;21925;21926;21927;21928;21929;21930;21931 21926 9 GASGTREDPNLVPSISNK AAKKGLDPYNVLAPKGASGTREDPNLVPSI GTREDPNLVPSISNKRIVGCICEEDNTSVV K G A N K R 1 1 2 1 0 0 1 2 0 1 1 1 0 0 2 3 1 0 0 1 0 0 18 1 1840.9279 P10606;Q6FHM4 P10606 69 86 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes no 3 6.043E-07 95.9 3 0.67706 0.88301 9.0356 3 Median 0.67706 0.88301 9.0356 3 0 Median NaN NaN NaN 0 0 Median 56532000 33498000 23033000 56532000 33498000 23033000 0 0 0 4050 1251 4151 14516;14517;14518 21932;21933;21934;21935 21935 4 GATGATTTIYAVEADGDPNAGFEK FETIERFMDCRIGRKGATGATTTIYAVEAD YAVEADGDPNAGFEKNKEPGEIQYLIKWKG K G A E K N 5 0 1 2 0 0 2 4 0 1 0 1 0 1 1 0 4 0 1 1 0 0 24 0 2355.0866 O14646 O14646 286 309 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 6.1595E-41 165.24 2 1 0.59465 0.82083 0.80167 2 Median 0.64771 0.81619 NaN 1 0 Median 0.54594 0.8255 NaN 1 0 Median 14955000 10250000 4705100 6064600 5052700 1011900 8890200 5197000 3693200 4051 1169 4152 14519;14520;14521 21936;21937;21938 21937 3 GATGEPEVMEPALEGTGK ______________________________ GEPEVMEPALEGTGKEGKKASSRKRTLAEP R G A G K E 2 0 0 0 0 0 4 4 0 0 1 1 1 0 2 0 2 0 0 1 0 0 18 0 1771.8298 Q9H6R4;A0A0A0MRW6;B4DF80 Q9H6R4 12 29 NOL6 Nucleolar protein 6 yes no 2 0.00025442 45.992 1 0.82087 1.2738 NaN 1 Median NaN NaN NaN 0 0 Median 0.82087 1.2738 NaN 1 0 Median 31372000 18748000 12623000 0 0 0 31372000 18748000 12623000 4052 1738 4153 14522 21939 21939 792 1 GATQQILDEAER FSGVALGEACTIVLRGATQQILDEAERSLH VLRGATQQILDEAERSLHDALCVLAQTVKD R G A E R S 2 1 0 1 0 2 2 1 0 1 1 0 0 0 0 0 1 0 0 0 0 0 12 0 1329.6525 V9HW96;P78371;F5GWF6;F8VQ14;B7Z4R3;Q9H369 V9HW96 377 388 HEL-S-100n;CCT2 T-complex protein 1 subunit beta yes no 2 7.4572E-16 140.07 3 0.31756 0.43264 10.493 3 Median 0.31756 0.43264 10.493 3 0 Median NaN NaN NaN 0 0 Median 31798000 23792000 8005700 31798000 23792000 8005700 0 0 0 4053 1426 4154 14523;14524;14525 21940;21941;21942;21943;21944 21942 4 GATYGKPVHHGVNQLK RIRVRRGGRKRPVPKGATYGKPVHHGVNQL ATYGKPVHHGVNQLKFARSLQSVAEERAGR K G A L K F 1 0 1 0 0 1 0 3 2 0 1 2 0 0 1 0 1 0 1 2 0 0 16 1 1704.906 A0A024R2Q4;P61313;E7EQV9;B4DLP4;E7ENU7;E7EX53;B4DEN1;A4D1Q5 A0A024R2Q4 78 93 RPL15;LOC136321 Ribosomal protein L15;60S ribosomal protein L15 yes no 2;3 1.4335E-13 141.54 4 0.81991 1.003 10.686 4 Median 0.81991 1.003 10.686 4 0 Median NaN NaN NaN 0 0 Median 71926000 39429000 32497000 71926000 39429000 32497000 0 0 0 4054 92 4155 14526;14527;14528;14529 21945;21946;21947;21948;21949;21950;21951;21952;21953 21950 9 GATYPSEIPK TVSEASYQSERVEEKGATYPSEIPKEDSTT RVEEKGATYPSEIPKEDSTTFAKREDRVTT K G A P K E 1 0 0 0 0 0 1 1 0 1 0 1 0 0 2 1 1 0 1 0 0 0 10 0 1061.5393 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424 A0A1P7ZIM8 449 458 LMO7 LIM domain only protein 7 yes no 2 0.022235 43.442 1 0.49169 0.61146 NaN 1 Median 0.49169 0.61146 NaN 1 0 Median NaN NaN NaN 0 0 Median 16676000 11491000 5185300 16676000 11491000 5185300 0 0 0 4055 525 4156 14530 21954;21955 21955 2 GAVDALAAALAHISGASSFEPR VDFFRPSAQRLIEEKGAVDALAAALAHISG AALAHISGASSFEPRSLITSDKGFVTMTLE K G A P R S 7 1 0 1 0 0 1 2 1 1 2 0 0 1 1 3 0 0 0 1 0 0 22 0 2110.0807 Q9BQ39;B4DED6;B4DW97;A0A087WVC1;K0J110;Q9NTA9 Q9BQ39 557 578 DDX50;mcdrh;DKFZp761E0323 ATP-dependent RNA helicase DDX50 yes no 3 1.0111E-26 149.72 2 0.70793 0.99111 13.014 2 Median 0.70793 0.99111 13.014 2 0 Median NaN NaN NaN 0 0 Median 6462800 3605200 2857600 6462800 3605200 2857600 0 0 0 4056 1707 4157 14531;14532 21956;21957 21957 2 GAVDGGLSIPHSTK LARTTTGNKVFGALKGAVDGGLSIPHSTKR KGAVDGGLSIPHSTKRFPGYDSESKEFNAE K G A T K R 1 0 0 1 0 0 0 3 1 1 1 1 0 0 1 2 1 0 0 1 0 0 14 0 1337.6939 A2RUM7;P46777;B3KTM6;Q59GX9;Q5T7N0 A2RUM7 165 178 RPL5 60S ribosomal protein L5 yes no 2;3 5.5484E-55 227.36 8 3 0.7818 1.0399 5.839 11 Median 0.78695 1.0428 6.2537 8 0 Median 0.63365 1.0118 2.5537 3 0 Median 3187400000 1825400000 1362000000 2825300000 1602700000 1222500000 362090000 222680000 139410000 4057 540 4158 14533;14534;14535;14536;14537;14538;14539;14540;14541;14542;14543 21958;21959;21960;21961;21962;21963;21964;21965;21966;21967;21968;21969;21970;21971;21972;21973;21974;21975;21976;21977 21971 20 GAVEALAAALAHISGATSVDQR ISHFKQSAEKLIEEKGAVEALAAALAHISG AALAHISGATSVDQRSLINSNVGFVTMILQ K G A Q R S 7 1 0 1 0 1 1 2 1 1 2 0 0 0 0 2 1 0 0 2 0 0 22 0 2107.1022 Q9NR30 Q9NR30 606 627 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 2.3384E-47 162.29 9 2 0.61146 0.88099 12.055 10 Median 0.63598 0.86526 13.426 8 0 Median 0.53991 0.88144 3.4705 2 0 Median 648690000 386630000 262060000 472750000 271560000 201190000 175940000 115070000 60865000 4058 1756 4159 14544;14545;14546;14547;14548;14549;14550;14551;14552;14553;14554 21978;21979;21980;21981;21982;21983;21984;21985;21986;21987;21988;21989;21990;21991;21992;21993;21994 21988 17 GAVGGTFDR PVAGSPKQPVRGYYRGAVGGTFDRLHNAHK VRGYYRGAVGGTFDRLHNAHKVLLSVACIL R G A D R L 1 1 0 1 0 0 0 3 0 0 0 0 0 1 0 0 1 0 0 1 0 0 9 0 878.42463 Q13057;K7EN91 Q13057 194 202 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes no 2 0.046848 40.268 1 0.57424 0.76673 NaN 1 Median 0.57424 0.76673 NaN 1 0 Median NaN NaN NaN 0 0 Median 1978200 1124900 853330 1978200 1124900 853330 0 0 0 4059 1462 4160 14555 21995 21995 1 GAVIVVSHDAR IESIDALGEAINEYKGAVIVVSHDARLITE NEYKGAVIVVSHDARLITETNCQLWVVEEQ K G A A R L 2 1 0 1 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 3 0 0 11 0 1122.6146 Q8NE71;Q2L6I2;Q59F96;H0YGW7;B4DNU2;A0A0G2JIC2 Q8NE71 790 800 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 6.7013E-05 117.53 4 2 0.61586 0.83147 21.208 6 Median 0.59666 0.80601 3.9806 4 0 Median 0.79168 1.1863 16.517 2 0 Median 155640000 95507000 60129000 124180000 78150000 46025000 31461000 17357000 14104000 4060 1653 4161 14556;14557;14558;14559;14560;14561 21996;21997;21998;21999;22000;22001;22002;22003;22004;22005 22003 10 GAVYSMVEFNGK YSDGKLQTVAEKEVKGAVYSMVEFNGKLLA EVKGAVYSMVEFNGKLLASINSTVRLYEWT K G A G K L 1 0 1 0 0 0 1 2 0 0 0 1 1 1 0 1 0 0 1 2 0 0 12 0 1300.6122 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 868 879 DDB1 DNA damage-binding protein 1 yes no 2 0.0085886 41.283 1 0.68417 1.029 NaN 1 Median NaN NaN NaN 0 0 Median 0.68417 1.029 NaN 1 0 Median 7851600 4377000 3474600 0 0 0 7851600 4377000 3474600 4061 1520 4162 14562 22006 22006 697 1 GAYDIFLNAK FQKDILIACRLNQKKGAYDIFLNAKEQNIV LNQKKGAYDIFLNAKEQNIVFNAETYSNLI K G A A K E 2 0 1 1 0 0 0 1 0 1 1 1 0 1 0 0 0 0 1 0 0 0 10 0 1110.571 E5KNY5;P42704;B4DSR0 E5KNY5 1050 1059 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.032411 77.318 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1688400 1688400 0 1688400 1688400 0 0 0 0 4062 1001 4163 14563 22007 22007 1 GCAFVTFTTR IEECRILRGPDGLSRGCAFVTFTTRAMAQT DGLSRGCAFVTFTTRAMAQTAIKAMHQAQT R G C T R A 1 1 0 0 1 0 0 1 0 0 0 0 0 2 0 0 3 0 0 1 0 0 10 0 1158.5492 G5EA30;Q92879 G5EA30 176 185 CELF1 CUGBP Elav-like family member 1 yes no 2 0.033044 47.198 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2128100 2128100 0 2128100 2128100 0 0 0 0 4063 1083 4164 14564 22008 22008 1 GCALQCAILSPAFK KDISTTLNADEAVARGCALQCAILSPAFKV RGCALQCAILSPAFKVREFSVTDAVPFPIS R G C F K V 3 0 0 0 2 1 0 1 0 1 2 1 0 1 1 1 0 0 0 0 0 0 14 0 1534.7636 A0A024RDQ0;A0A024RDS1;Q92598;B4DF68;B4DZB4;A0A0A0MSM0;B4DY72;D6RJ96;B3KNM0;E9PDE8;B4DXT2;Q53ZP9;A0A140VKE7;O95757;B4DZR0;O14992;A0A087WTS8;B4E0H6;B4E354;B4DT47;A0A087WYC1;B4DIZ3;B4DUS3;Q59GF8;V9HW33;B4DH02;P34932 A0A024RDQ0 375 388 HSPH1;HSPA4L;HS24/p52;HSPA4;HEL-S-5a Heat shock protein 105 kDa;Heat shock 70 kDa protein 4L;Heat shock 70 kDa protein 4 no no 2 5.821E-10 104.79 1 0.30276 0.38395 NaN 1 Median 0.30276 0.38395 NaN 1 0 Median NaN NaN NaN 0 0 Median 10354000 8130300 2223800 10354000 8130300 2223800 0 0 0 4064 320;513;336 4165 14565 22009 22009 1 GCAVVEFK VTYVELLMDAEGKSRGCAVVEFKMEESMKK DAEGKSRGCAVVEFKMEESMKKAAEVLNKH R G C F K M 1 0 0 0 1 0 1 1 0 0 0 1 0 1 0 0 0 0 0 2 0 0 8 0 908.44259 P52272;Q59ES8;M0R019;B4DEG4;M0R2T0;M0R0N3;M0QYL3 P52272 113 120 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 0.0080124 79.116 2 0.31209 0.39038 11.503 2 Median 0.31209 0.39038 11.503 2 0 Median NaN NaN NaN 0 0 Median 52932000 40122000 12810000 52932000 40122000 12810000 0 0 0 4065 1363 4166 14566;14567 22010;22011 22011 2 GCGTVLLSGPR GKILTFDQLALDSPKGCGTVLLSGPRKGRE DSPKGCGTVLLSGPRKGREVYRHFGKAPGT K G C P R K 0 1 0 0 1 0 0 3 0 0 2 0 0 0 1 1 1 0 0 1 0 0 11 0 1115.5757 Q0QEW2;G3V203;H0YHA7;A0A024QZD1;J3QQ67;Q07020;F8VUA6 Q0QEW2 110 120 RPL18 60S ribosomal protein L18 yes no 2 2.1327E-06 117.81 5 2 0.7079 0.98294 15.963 7 Median 0.70865 0.98294 18.979 5 0 Median 0.63988 0.98478 2.6071 2 0 Median 539270000 318140000 221140000 498090000 293330000 204750000 41186000 24805000 16382000 4066 9 4167 14568;14569;14570;14571;14572;14573;14574 22012;22013;22014;22015;22016;22017;22018;22019;22020;22021;22022;22023;22024;22025;22026;22027;22028;22029 22025 18 GCGTVLLSGPRK GKILTFDQLALDSPKGCGTVLLSGPRKGRE SPKGCGTVLLSGPRKGREVYRHFGKAPGTP K G C R K G 0 1 0 0 1 0 0 3 0 0 2 1 0 0 1 1 1 0 0 1 0 0 12 1 1243.6707 Q0QEW2;G3V203;H0YHA7;A0A024QZD1;J3QQ67;Q07020;F8VUA6 Q0QEW2 110 121 RPL18 60S ribosomal protein L18 yes no 2 0.00026884 122.26 3 0.67599 0.87995 12.746 3 Median 0.67599 0.87995 12.746 3 0 Median NaN NaN NaN 0 0 Median 60850000 31480000 29370000 60850000 31480000 29370000 0 0 0 4067 9 4168 14575;14576;14577 22030;22031;22032 22032 3 GCHLLVATPGR YGGADIGQQIRDLERGCHLLVATPGRLVDM DLERGCHLLVATPGRLVDMMERGKIGLDFC R G C G R L 1 1 0 0 1 0 0 2 1 0 2 0 0 0 1 0 1 0 0 1 0 0 11 0 1179.6183 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1;A0A024R9A4;O15523;B4DLU5;B4E010 A0A0D9SFB3 316 326 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2;3 5.24E-05 83.948 7 0.54938 0.74013 20.148 4 Median 0.54938 0.74013 20.148 4 0 Median NaN NaN NaN 0 0 Median 49642000 34138000 15505000 49642000 34138000 15505000 0 0 0 4068 432 4169 14578;14579;14580;14581;14582;14583;14584 22033;22034;22035;22036;22037;22038;22039;22040;22041;22042;22043;22044 22043 12 GCIESSSVFDADTLLYR NTDCCHSSERDGGQKGCIESSSVFDADTLL IESSSVFDADTLLYRGTLKCNHSSKTTSLE K G C Y R G 1 1 0 2 1 0 1 1 0 1 2 0 0 1 0 3 1 0 1 1 0 0 17 0 1931.8935 Q13129;Q59GL0 Q13129 1653 1669 RLF Zinc finger protein Rlf yes no 2 0.005075 108.59 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 804310 804310 0 804310 804310 0 0 0 0 4069 1463 4170 14585 22045 22045 1 GCIVDANLSVLNLVIVK YRPRRTGERKRKSVRGCIVDANLSVLNLVI IVDANLSVLNLVIVKKGEKDIPGLTDTTVP R G C V K K 1 0 2 1 1 0 0 1 0 2 3 1 0 0 0 1 0 0 0 4 0 0 17 0 1826.0336 Q96DV6;A2A3R6;P62753;A2A3R5;Q9BZU1 Q96DV6 99 115 RPS6 40S ribosomal protein S6 yes no 2 1.1993E-118 247.88 10 1 0.98325 1.2847 14.894 8 Median 0.98325 1.2847 14.894 8 0 Median NaN NaN NaN 0 0 Median 2090100000 999370000 1090700000 2086100000 999370000 1086700000 4008100 0 4008100 4070 535 4171 14586;14587;14588;14589;14590;14591;14592;14593;14594;14595;14596 22046;22047;22048;22049;22050;22051;22052;22053;22054;22055;22056;22057;22058;22059;22060;22061;22062;22063;22064;22065;22066 22060 21 GCLLYGPPGTGK TNPELFQRVGIIPPKGCLLYGPPGTGKTLL PPKGCLLYGPPGTGKTLLARAVASQLDCNF K G C G K T 0 0 0 0 1 0 0 4 0 0 2 1 0 0 2 0 1 0 1 0 0 0 12 0 1218.6067 V9HW24;A0A087X2I1;P62333;H0YJC0;H0YJS8;B4DR91 V9HW24 169 180 HEL-S-73;PSMC6 26S protease regulatory subunit 10B yes no 2 0.0025418 64.297 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4071 379 4172 14597 22067 22067 1 GCLVTASADK HNDEISGLDLSSQIKGCLVTASADKYVKIW SSQIKGCLVTASADKYVKIWDILGDRPSLV K G C D K Y 2 0 0 1 1 0 0 1 0 0 1 1 0 0 0 1 1 0 0 1 0 0 10 0 1020.491 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DNL1;B4DJV5 Q9BV37 399 408 PWP1 Periodic tryptophan protein 1 homolog yes no 2 0.00041852 87.308 1 0.74791 0.9545 NaN 1 Median 0.74791 0.9545 NaN 1 0 Median NaN NaN NaN 0 0 Median 13703000 8236800 5465800 13703000 8236800 5465800 0 0 0 4072 273 4173 14598 22068;22069 22068 2 GCNIENACYPLGICAER PVGAALLTQEGRIFKGCNIENACYPLGICA NIENACYPLGICAERTAIQKAVSEGYKDFR K G C E R T 2 1 2 0 3 0 2 2 0 2 1 0 0 0 1 0 0 0 1 0 0 0 17 0 1995.8601 P32320 P32320 52 68 CDA Cytidine deaminase yes yes 2 6.5678E-05 64.878 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1874600 1874600 0 1874600 1874600 0 0 0 0 4073 1313 4174 14599 22070;22071 22071 2 GCPVNTEPSGPTCEK ASPPSGCPMHEGKMKGCPVNTEPSGPTCEK GCPVNTEPSGPTCEKKTYSVPAHQERAYEY K G C E K K 0 0 1 0 2 0 2 2 0 0 0 1 0 0 3 1 2 0 0 1 0 0 15 0 1631.692 A0A024RBY9;P53701 A0A024RBY9 34 48 HCCS Cytochrome c-type heme lyase yes no 2 0.0090035 84.352 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1936300 1936300 0 1936300 1936300 0 0 0 0 4074 285 4175 14600;14601 22072;22073 22072 2 GCTATLGNFAK LLMMAGIDDCYTSARGCTATLGNFAKATFD TSARGCTATLGNFAKATFDAISKTYSYLTP R G C A K A 2 0 1 0 1 0 0 2 0 0 1 1 0 1 0 0 2 0 0 0 0 0 11 0 1138.5441 P15880;Q8J014;Q8N5L9;Q6IPX5;Q3KQT6;H0YEN5;E9PQD7;Q9BSW5;O60249;Q8NI62 P15880 228 238 RPS2;rps2;OK/KNS-cl.6 40S ribosomal protein S2 no no 2 1.3627E-10 172.25 5 2 0.72368 0.9478 19.225 6 Median 0.78173 1.0331 8.6616 4 0 Median 0.43913 0.70167 1.1171 2 0 Median 892970000 491280000 401690000 797520000 425950000 371570000 95450000 65330000 30120000 4075 1269;1657 4176 14602;14603;14604;14605;14606;14607;14608 22074;22075;22076;22077;22078;22079;22080;22081;22082;22083;22084 22075 11 GDAASSPAPAASVGSSQGGAR TAGRPPRTFEEALARGDAASSPAPAASVGS PAPAASVGSSQGGARKRQVDADLQPAGSLP R G D A R K 6 1 0 1 0 1 0 4 0 0 0 0 0 0 2 5 0 0 0 1 0 0 21 0 1799.8398 E7EXA6;Q96S08;A0A0D9SF58;Q8WVB6;B4DEY3;F8WCC1 E7EXA6 59 79 CHTF18;RUVBL Chromosome transmission fidelity protein 18 homolog yes no 2 0.0029824 62.861 2 1 1.3419 1.7785 134.24 2 Median 0.51884 0.68835 NaN 1 0 Median 3.4704 4.595 NaN 1 0 Median 5042700 2437400 2605300 2292600 1664700 627950 2750100 772750 1977400 4076 433 4177 14609;14610;14611 22085;22086;22087 22085 3 GDADQASNILASFGLSAR NIGSRGPLPLSSQHRGDADQASNILASFGL DQASNILASFGLSARDLDELSRYPEDKITP R G D A R D 4 1 1 2 0 1 0 2 0 1 2 0 0 1 0 3 0 0 0 0 0 0 18 0 1791.8751 A0A0R4J2E8;A8MXP9;P43243;D6REM6;Q68D11;D6R991 A0A0R4J2E8 103 120 MATR3;DKFZp686K23100 Matrin-3 yes no 2 1.63E-38 159.18 4 2 0.4439 0.59781 108.29 6 Median 0.43137 0.57489 4.8959 4 0 Median 2.9446 4.6904 2.6954 2 0 Median 174170000 79304000 94864000 76521000 54126000 22395000 97648000 25178000 72469000 4077 445 4178 14612;14613;14614;14615;14616;14617 22088;22089;22090;22091;22092;22093;22094;22095;22096;22097 22097 10 GDDGRGGGTGGPNHPPAPR RGARSREFRSYREFRGDDGRGGGTGGPNHP RGGGTGGPNHPPAPRGRTASETRSEGSEYE R G D P R G 1 2 1 2 0 0 0 7 1 0 0 0 0 0 4 0 1 0 0 0 0 0 19 1 1770.8146 P48634;B4DLY2 P48634 1062 1080 PRRC2A Protein PRRC2A yes no 3 0.037231 39.244 1 1.1038 1.4323 NaN 1 Median 1.1038 1.4323 NaN 1 0 Median NaN NaN NaN 0 0 Median 816670 419740 396930 816670 419740 396930 0 0 0 4078 1348 4179 14618 22098 22098 1 GDDLQAIKK SKSGQRGSSKSGKLKGDDLQAIKKELTQIK KSGKLKGDDLQAIKKELTQIKQKVDSLLEN K G D K K E 1 0 0 2 0 1 0 1 0 1 1 2 0 0 0 0 0 0 0 0 0 0 9 1 986.53966 B2R5W2;G3V4C1;G3V4W0;B4DY08;B3KX96;B2R603;G3V2Q1;P07910;G3V576;A8K9A4;G3V2D6;B4DQQ2 B2R5W2 177 185 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 no no 2 6.7197E-20 180.87 3 1 0.56184 0.68742 1.1317 2 Median 0.56184 0.68742 1.1317 2 0 Median NaN NaN NaN 0 0 Median 93273000 73747000 19526000 81072000 61546000 19526000 12201000 12201000 0 4079 694 4180 14619;14620;14621;14622 22099;22100;22101;22102;22103;22104 22101 6 GDEELDSLIK KVKRITPRHLQLAIRGDEELDSLIKATIAG QLAIRGDEELDSLIKATIAGGGVIPHIHKS R G D I K A 0 0 0 2 0 0 2 1 0 1 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1117.5503 Q71UI9;P0C0S5;C9J0D1;C9J386 Q71UI9 93 102 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z;Histone H2A yes no 1;2 3.1055E-13 184.49 8 7 0.70788 0.99923 13.593 12 Median 0.70924 0.96542 3.9721 5 0 Linear 0.70322 1.0629 14.386 7 0 Median 6190700000 3621600000 2569100000 3833400000 2178100000 1655300000 2357300000 1443500000 913810000 4080 1249 4181 14623;14624;14625;14626;14627;14628;14629;14630;14631;14632;14633;14634;14635;14636;14637 22105;22106;22107;22108;22109;22110;22111;22112;22113;22114;22115;22116;22117;22118;22119;22120;22121;22122;22123;22124;22125;22126;22127;22128;22129 22109 25 GDEVDGVDEVAK LKKQLPGVKSEGKRKGDEVDGVDEVAKKKS KRKGDEVDGVDEVAKKKSKKEKDKDSKLEK K G D A K K 1 0 0 3 0 0 2 2 0 0 0 1 0 0 0 0 0 0 0 3 0 0 12 0 1231.5568 A0A024R3T8;P09874;B4E0E1;B2R5W3;Q05D33;Q6PJL0;Q96P95 A0A024R3T8 210 221 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.0061809 51.276 1 2 0.313 0.44454 9.1929 2 Median NaN NaN NaN 0 0 Median 0.313 0.44454 9.1929 2 0 Median 10515000 6841300 3673400 0 0 0 10515000 6841300 3673400 4081 107 4182 14638;14639;14640 22130;22131;22132 22131 3 GDFILVGDLMR CNHYNNIMALYLKTKGDFILVGDLMRSVLL LKTKGDFILVGDLMRSVLLLAYKPMEGNFE K G D M R S 0 1 0 2 0 0 0 2 0 1 2 0 1 1 0 0 0 0 0 1 0 0 11 0 1234.638 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 918 928 DDB1 DNA damage-binding protein 1 yes no 2 0.014345 44.203 1 1.0295 1.4274 NaN 1 Median 1.0295 1.4274 NaN 1 0 Median NaN NaN NaN 0 0 Median 4205900 1932500 2273400 4205900 1932500 2273400 0 0 0 4082 1520 4183 14641 22133 22133 1 GDFLALDLGGTNFR MLPTYVCATPDGTEKGDFLALDLGGTNFRV KGDFLALDLGGTNFRVLLVRVRNGKWGGVE K G D F R V 1 1 1 2 0 0 0 3 0 0 3 0 0 2 0 0 1 0 0 0 0 0 14 0 1494.7467 E9PB90;A8K2U2;P52789;Q68E10;Q53QX9;A0A024R7R1;Q59H08;P52790 E9PB90 498 511 HK2;DKFZp686M1669;HK3 Hexokinase;Hexokinase-2;Hexokinase-3 yes no 2 0.029759 76.655 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1033400 1033400 0 1033400 1033400 0 0 0 0 4083 585 4184 14642 22134 22134 1 GDFSYIGNLMTK LSYIQSIPVVNEEHRGDFSYIGNLMTKEFI EHRGDFSYIGNLMTKEFIGQQLILIIKSLD R G D T K E 0 0 1 1 0 0 0 2 0 1 1 1 1 1 0 1 1 0 1 0 0 0 12 0 1344.6384 Q9BPX3;Q6NUR1 Q9BPX3 387 398 NCAPG Condensin complex subunit 3 yes no 2 0.00082102 69.65 1 1 0.47348 0.65533 2.5978 2 Median 0.5234 0.6434 NaN 1 0 Median 0.42832 0.66748 NaN 1 0 Median 34950000 23342000 11608000 1445100 875140 569910 33505000 22467000 11038000 4084 1706 4185 14643;14644 22135;22136 22136 767 2 GDGPICLVLAPTR LPAIVHINHQPFLERGDGPICLVLAPTREL ERGDGPICLVLAPTRELAQQVQQVAAEYCR R G D T R E 1 1 0 1 1 0 0 2 0 1 2 0 0 0 2 0 1 0 0 1 0 0 13 0 1367.7231 Q59F66;Q92841;B4DZQ7;B4DN41;J3KTA4;B5BUE6;P17844;B4DNG2;Q7Z2V5;Q59E92;J3KRZ1;J3QRQ7 B4DN41 154 166 DDX17;DDX5;DKFZp686J01190 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 no no 2 3.7154E-06 126.66 4 2 0.50217 0.68594 59.393 6 Median 0.48416 0.65373 5.5002 4 0 Median 1.3724 2.0635 1.5476 2 0 Median 200430000 125900000 74530000 167540000 111590000 55951000 32888000 14309000 18579000 4085 833;1554 4186 14645;14646;14647;14648;14649;14650 22137;22138;22139;22140;22141;22142;22143;22144;22145;22146;22147;22148;22149;22150 22144 14 GDGVTPPAGTAAPAPPPLSQDVPGR CGEDASEAQEVTIPRGDGVTPPAGTAAPAP AAPAPPPLSQDVPGRADTSQPSARMRGHGE R G D G R A 4 1 0 2 0 1 0 4 0 0 1 0 0 0 7 1 2 0 0 2 0 0 25 0 2324.1761 Q59FM7;A0A0G2JIS2;A0A024RCN9;B7Z852;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7;A0A0G2JRR0;A0A0G2JRN8 Q59FM7 365 389 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 2 4.9032E-05 82.942 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 622860 622860 0 622860 622860 0 0 0 0 4086 298 4187 14651;14652 22151;22152 22151 2 GDHVIGIVTAK VYWVDSQQKRYVPVKGDHVIGIVTAKSGDI VPVKGDHVIGIVTAKSGDIFKVDVGGSEPA K G D A K S 1 0 0 1 0 0 0 2 1 2 0 1 0 0 0 0 1 0 0 2 0 0 11 0 1108.6241 Q9NQT5;Q9NYS3 Q9NQT5 114 124 EXOSC3;PNAS-3 Exosome complex component RRP40 yes no 2 0.0040005 69.275 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11656000 11656000 0 5904700 5904700 0 5750900 5750900 0 4087 1754 4188 14653;14654 22153;22154 22153 2 GDINILLIGDPSVAK LGGVERDLENGSHIRGDINILLIGDPSVAK GDINILLIGDPSVAKSQLLRYVLCTAPRAI R G D A K S 1 0 1 2 0 0 0 2 0 3 2 1 0 0 1 1 0 0 0 1 0 0 15 0 1523.8559 Q8NHX6;Q53HJ4;B2R7C5;A0A0S2Z4T1;A0A0S2Z492;P25205;B4DUQ9;J3KQ69;B4DS46 Q8NHX6 337 351 HCC5;MCM3 DNA helicase;DNA replication licensing factor MCM3 yes no 2 4.177E-05 104.94 4 0.30519 0.38412 21.933 3 Median 0.30519 0.38412 21.933 3 0 Median NaN NaN NaN 0 0 Median 32433000 25388000 7044600 32433000 25388000 7044600 0 0 0 4088 463 4189 14655;14656;14657;14658 22155;22156;22157;22158;22159 22156 5 GDKVDILYNNIK SLEAHVNGFRFTSVRGDKVDILYNNIKHAL SVRGDKVDILYNNIKHALFQPCDGEMIIVL R G D I K H 0 0 2 2 0 0 0 1 0 2 1 2 0 0 0 0 0 0 1 1 0 0 12 1 1390.7456 Q9Y5B9 Q9Y5B9 694 705 SUPT16H FACT complex subunit SPT16 yes yes 2 2.0781E-09 148.28 4 1 0.75493 0.92276 7.6613 3 Median 0.75493 0.92276 7.6613 3 0 Median NaN NaN NaN 0 0 Median 163990000 92930000 71057000 152560000 81506000 71057000 11424000 11424000 0 4089 1829 4190 14659;14660;14661;14662;14663 22160;22161;22162;22163;22164;22165;22166;22167 22165 8 GDLDLELVLLCK GVMRVGLVAKGLLLKGDLDLELVLLCKEKP LLKGDLDLELVLLCKEKPTTALLDKVADNL K G D C K E 0 0 0 2 1 0 1 1 0 0 5 1 0 0 0 0 0 0 0 1 0 0 12 0 1386.7429 F4ZW64;A8K590;F4ZW65;A0A024R7C7;F4ZW66;Q12906;Q59GP7;K7EKJ9;K7EJ09;K7EKY0;K7ER69 F4ZW64 106 117 ILF3 Interleukin enhancer-binding factor 3 yes no 2 0.00034582 111.06 2 0.89393 1.1056 NaN 1 Median 0.89393 1.1056 NaN 1 0 Median NaN NaN NaN 0 0 Median 3931100 2097400 1833600 3931100 2097400 1833600 0 0 0 4090 175 4191 14664;14665 22168;22169 22169 2 GDLETLQPGDDVEFTIK GDVVKEIFFHYSEFKGDLETLQPGDDVEFT LETLQPGDDVEFTIKDRNGKEVATDVRLLP K G D I K D 0 0 0 3 0 1 2 2 0 1 2 1 0 1 1 0 2 0 0 1 0 0 17 0 1875.9102 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0;E9PNG3 Q9GZV0 187 203 CSDE1;UNR Cold shock domain-containing protein E1 yes no 2 1.5819E-25 133.04 4 1 0.43752 0.55399 14.281 4 Median 0.43752 0.55399 14.281 4 0 Median NaN NaN NaN 0 0 Median 39735000 24180000 15556000 35465000 24180000 11285000 4270700 0 4270700 4091 31 4192 14666;14667;14668;14669;14670 22170;22171;22172;22173;22174;22175;22176;22177;22178 22174 9 GDLGIEIPAEK FDEILEASDGIMVARGDLGIEIPAEKVFLA MVARGDLGIEIPAEKVFLAQKMMIGRCNRA R G D E K V 1 0 0 1 0 0 2 2 0 2 1 1 0 0 1 0 0 0 0 0 0 0 11 0 1140.6027 V9HWB8;P14618;B4DNK4;H3BTN5;A0A024R5Z9;B4DRT3;A0A024R609;Q8WUW7;Q504U3;H3BR70;B4DPM0;Q16716;Q16715;P30613 V9HWB8 295 305 HEL-S-30;PKM;PKM2;PKLR Pyruvate kinase;Pyruvate kinase PKM;Pyruvate kinase PKLR yes no 2 0.0016771 108.57 4 1 0.79706 0.97858 88.161 5 Median 0.78589 0.96726 6.8429 4 0 Median 4.6375 7.0209 NaN 1 0 Median 91345000 43803000 47541000 72690000 40905000 31784000 18655000 2898200 15757000 4092 1267 4193 14671;14672;14673;14674;14675 22179;22180;22181;22182;22183;22184 22179 4 GDLPFVVPR AMNREVSSLKNKLRRGDLPFVVPRRMARKG KNKLRRGDLPFVVPRRMARKGAGDGSDEEV R G D P R R 0 1 0 1 0 0 0 1 0 0 1 0 0 1 2 0 0 0 0 2 0 0 9 0 998.55492 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1924 1932 MYH9;FLJ00279 Myosin-9 no no 2 0.046848 40.268 1 0.82782 1.122 NaN 1 Median 0.82782 1.122 NaN 1 0 Median NaN NaN NaN 0 0 Median 45068000 23380000 21688000 45068000 23380000 21688000 0 0 0 4093 61;490 4194 14676 22185 22185 1 GDLPREPLVATNLPGR GSTELQAAKKVHTSKGDLPREPLVATNLPG DLPREPLVATNLPGRGQLQKLASERNLFIS K G D G R G 1 2 1 1 0 0 1 2 0 0 3 0 0 0 3 0 1 0 0 1 0 0 16 1 1703.9319 P42166 P42166 249 264 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 3 0.025049 33.307 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4318500 4318500 0 4318500 4318500 0 0 0 0 4094 1335 4195 14677 22186 22186 1 GDLSTALEVAIDCYEK STNISFPLVTVHLEKGDLSTALEVAIDCYE DLSTALEVAIDCYEKYKVLPRIHDVLCKLV K G D E K Y 2 0 0 2 1 0 2 1 0 1 2 1 0 0 0 1 1 0 1 1 0 0 16 0 1782.8346 E5KNY5;P42704;B4DSR0 E5KNY5 836 851 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 4.4301E-05 96.059 3 0.34661 0.43843 20.859 3 Median 0.34661 0.43843 20.859 3 0 Median NaN NaN NaN 0 0 Median 24036000 18435000 5600700 24036000 18435000 5600700 0 0 0 4095 1001 4196 14678;14679;14680 22187;22188;22189;22190;22191 22191 5 GDNSSVSSLCISPDGK VEWNVQTCKVKCKWKGDNSSVSSLCISPDG DNSSVSSLCISPDGKMLLSAGRTIKLWVLE K G D G K M 0 0 1 2 1 0 0 2 0 1 1 1 0 0 1 5 0 0 0 1 0 0 16 0 1621.7254 Q15061;C9JEE7 Q15061 166 181 WDR43 WD repeat-containing protein 43 yes no 2 1.006E-05 108.97 4 2 0.9004 1.1382 14.584 6 Median 0.94412 1.1943 7.6731 4 0 Median 0.6243 0.9337 0.0037014 2 0 Median 46965000 26011000 20954000 28125000 15178000 12947000 18840000 10833000 8006600 4096 1505 4197 14681;14682;14683;14684;14685;14686 22192;22193;22194;22195;22196;22197;22198 22193 7 GDPLGGVISNYLLEK SSRFGKYMDIEFDFKGDPLGGVISNYLLEK GDPLGGVISNYLLEKSRVVKQPRGERNFHV K G D E K S 0 0 1 1 0 0 1 3 0 1 3 1 0 0 1 1 0 0 1 1 0 0 15 0 1573.8352 E9PDF6;B0I1S9;O43795;E7EQD9;Q05CR5;Q14777 E9PDF6 178 192 MYO1B Unconventional myosin-Ib yes no 2 0.00060953 90.793 3 1.1379 1.4455 8.8864 3 Median 1.1379 1.4455 8.8864 3 0 Median NaN NaN NaN 0 0 Median 25892000 10939000 14953000 25892000 10939000 14953000 0 0 0 4097 665 4198 14687;14688;14689 22199;22200;22201;22202;22203;22204 22200 6 GDPQVYEELFSYSCPK QLREKYGDKMLRMQKGDPQVYEELFSYSCP DPQVYEELFSYSCPKFLSPVVPNYDNVHPN K G D P K F 0 0 0 1 1 1 2 1 0 0 1 1 0 1 2 2 0 0 2 1 0 0 16 0 1917.8455 B0QY90;B4DQF6;B3KPB9;B0QY89;Q9Y262;Q7Z5X3;Q8N7H0;B3KNG0 B0QY90 306 321 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2 0.013863 87.719 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4098 666 4199 14690 22205 22205 1 GDSKKDDEENYLDLFSHK HAMQLLTAEIEKIQKGDSKKDDEENYLDLF KKDDEENYLDLFSHKNMKLKERVLIPVKQY K G D H K N 0 0 1 4 0 0 2 1 1 0 2 3 0 1 0 2 0 0 1 0 0 0 18 2 2138.9756 B4DDX2;B2R7B5;Q07666;B4E043 B4DDX2 115 132 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 4 0.026777 39.853 1 0.72176 0.86065 NaN 1 Median 0.72176 0.86065 NaN 1 0 Median NaN NaN NaN 0 0 Median 3103700 1641500 1462200 3103700 1641500 1462200 0 0 0 4099 704 4200 14691 22206 22206 1 GDSVIVVLR KPVNKDRYISKMFLRGDSVIVVLRNPLIAG SKMFLRGDSVIVVLRNPLIAGK________ R G D L R N 0 1 0 1 0 0 0 1 0 1 1 0 0 0 0 1 0 0 0 3 0 0 9 0 956.56548 P62316;K7EJB5 P62316 103 111 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 2 0.0068653 96.492 2 2 0.65068 0.89625 8.4668 4 Median 0.67663 0.89807 7.3555 2 0 Median 0.61354 0.86484 12.114 2 0 Median 37431000 21139000 16292000 19055000 10574000 8480400 18376000 10564000 7811600 4100 1408 4201 14692;14693;14694;14695 22207;22208;22209;22210;22211;22212;22213;22214 22208 8 GDTHEASACLGFQEEDPPGEK KGLEQGGKASDGISKGDTHEASACLGFQEE SACLGFQEEDPPGEKVASLPGDFKQEEVGG K G D E K V 2 0 0 2 1 1 4 3 1 0 1 1 0 1 2 1 1 0 0 0 0 0 21 0 2272.9543 Q7Z5J4;A8MXE8 Q7Z5J4 782 802 RAI1 Retinoic acid-induced protein 1 yes no 3 0.0082219 24.282 1 1.0047 1.2491 NaN 1 Median 1.0047 1.2491 NaN 1 0 Median NaN NaN NaN 0 0 Median 4017800 2562300 1455500 4017800 2562300 1455500 0 0 0 4101 1617 4202 14696 22215 22215 1 GDTNIKPILQVINIRPITTGNSPPR VGQLSEGAIAAIMQKGDTNIKPILQVINIR VINIRPITTGNSPPRYRLLMSDGLNTLSSF K G D P R Y 0 2 3 1 0 1 0 2 0 5 1 1 0 0 4 1 3 0 0 1 0 0 25 2 2713.5239 P27694;I3L524;I3L2M5 P27694 17 41 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 4 0.0017868 42.705 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9844200 9844200 0 1876500 1876500 0 7967700 7967700 0 4102 1302 4203 14697;14698 22216;22217 22217 2 GDTPGHATPGHGGATSSAR PTPSHTPAGAATPGRGDTPGHATPGHGGAT GHATPGHGGATSSARKNRWDETPKTERDTP R G D A R K 3 1 0 1 0 0 0 5 2 0 0 0 0 0 2 2 3 0 0 0 0 0 19 0 1732.7877 O75533;Q7Z497;A0JLT9;Q32Q20;A0PJH5 O75533 271 289 SF3B1 Splicing factor 3B subunit 1 yes no 3 0.04259 12.848 1 1.9717 2.3657 NaN 1 Median NaN NaN NaN 0 0 Median 1.9717 2.3657 NaN 1 0 Median 580640 198910 381730 0 0 0 580640 198910 381730 4103 1204 4204 14699 22218;22219 22219 2 GDVAEGDLIEHFSQFGTVEK GAHAKVKKLFVGGLKGDVAEGDLIEHFSQF GDLIEHFSQFGTVEKAEIIADKQSGKKRGF K G D E K A 1 0 0 2 0 1 3 3 1 1 1 1 0 2 0 1 1 0 0 2 0 0 20 0 2177.0277 Q13151 Q13151 107 126 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 2;3 2.69E-72 194.67 7 2 0.38122 0.48476 94.058 9 Median 0.37288 0.47804 10.89 7 0 Median 2.5401 3.8621 5.3154 2 0 Median 265510000 171950000 93557000 222470000 159720000 62749000 43039000 12231000 30808000 4104 1464 4205 14700;14701;14702;14703;14704;14705;14706;14707;14708 22220;22221;22222;22223;22224;22225;22226;22227;22228;22229;22230;22231;22232 22226 13 GDVEEDETIPDSEQDIRPR VNGMKYSDIDIILLKGDVEEDETIPDSEQD EDETIPDSEQDIRPRFHRSRTVAQQHDEDG K G D P R F 0 2 0 4 0 1 4 1 0 2 0 0 0 0 2 1 1 0 0 1 0 0 19 1 2198.9927 A0A024RAM0;Q92973 A0A024RAM0 328 346 TNPO1 Transportin-1 yes no 3 0.0067699 38.824 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7723100 0 7723100 0 0 0 7723100 0 7723100 4105 246 4206 14709;14710 22233;22234 22233 2 GDVENIEVVQK SRLAVTRVIQALAMKGDVENIEVVQKMLNG LAMKGDVENIEVVQKMLNGLEDSIGLSKMV K G D Q K M 0 0 1 1 0 1 2 1 0 1 0 1 0 0 0 0 0 0 0 3 0 0 11 0 1228.6299 E5KNY5;P42704;B4DSR0 E5KNY5 1153 1163 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.0013341 110.76 2 1 5.2333 7.2181 NaN 1 Median NaN NaN NaN 0 0 Median 5.2333 7.2181 NaN 1 0 Median 13457000 10070000 3386700 8501200 8501200 0 4955700 1569000 3386700 4106 1001 4207 14711;14712;14713 22235;22236;22237 22237 3 GDVVLQSDHVIETLTK SLFVLHVQRADNKQKGDVVLQSDHVIETLT DVVLQSDHVIETLTKTALSANRVNSININQ K G D T K T 0 0 0 2 0 1 1 1 1 1 2 1 0 0 0 1 2 0 0 3 0 0 16 0 1752.9258 F5H6E2;B7Z3E5;O00159;D3DTH7 F5H6E2 966 981 MYO1C Unconventional myosin-Ic yes no 2;3 1.0918E-06 115.83 5 0.82505 1.0321 5.9159 3 Plateau 0.82505 1.0321 5.9159 3 0 Plateau NaN NaN NaN 0 0 Median 54582000 30721000 23861000 54582000 30721000 23861000 0 0 0 4107 905 4208 14714;14715;14716;14717;14718 22238;22239;22240;22241;22242;22243 22240 6 GDYLAVVLATQGHTQVLIHQLSR ICHGKPVTQVTWHGRGDYLAVVLATQGHTQ ATQGHTQVLIHQLSRRRSQSPFRRSHGQVQ R G D S R R 2 1 0 1 0 3 0 2 2 1 4 0 0 0 0 1 2 0 1 3 0 0 23 0 2518.3656 B2RDN4;Q14137;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 B2RDN4 546 568 BOP1 Ribosome biogenesis protein BOP1 yes no 3 1.8395E-38 125.73 5 2 0.78524 1.0674 8.8336 5 Median 0.8106 1.1019 6.8232 4 0 Median 0.61114 0.95376 NaN 1 0 Median 215830000 130620000 85205000 172700000 101360000 71339000 43127000 29261000 13866000 4108 738 4209 14719;14720;14721;14722;14723;14724;14725 22244;22245;22246;22247;22248;22249;22250;22251;22252 22248 8 GEALSALDSK VQRIMVANIEEVLQRGEALSALDSKANNLS EVLQRGEALSALDSKANNLSSLSKKYRQDA R G E S K A 2 0 0 1 0 0 1 1 0 0 2 1 0 0 0 2 0 0 0 0 0 0 10 0 989.50294 O75396 O75396 160 169 SEC22B Vesicle-trafficking protein SEC22b yes yes 2 0.0002688 72.643 2 1 0.52376 0.65338 39.949 2 Median 0.52376 0.65338 39.949 2 0 Median NaN NaN NaN 0 0 Median 23779000 15846000 7932400 23779000 15846000 7932400 0 0 0 4109 1200 4210 14726;14727;14728 22253;22254;22255;22256 22256 4 GEASETLQSPGYDPSRPESFFQQSFQR TPGWHQLQPRRVSFRGEASETLQSPGYDPS DPSRPESFFQQSFQRLSRLGHGSYGEVFKV R G E Q R L 1 2 0 1 0 4 3 2 0 0 1 0 0 3 3 5 1 0 1 0 0 0 27 1 3074.4006 A6NHV6;Q0IJ49;B4DZM6;Q99640;I3L136;I3L1H7;I3L4K3;I3L3P0 A6NHV6 77 103 PKMYT1 Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase yes no 3 0.0049403 42.106 1 0.45468 0.60499 NaN 1 Median 0.45468 0.60499 NaN 1 0 Median NaN NaN NaN 0 0 Median 1433400 818540 614870 1433400 818540 614870 0 0 0 4110 569 4211 14729 22257 22257 1 GEATVSFDDPPSAK PMINLYTDKDTGKPKGEATVSFDDPPSAKA KGEATVSFDDPPSAKAAIDWFDGKEFHGNI K G E A K A 2 0 0 2 0 0 1 1 0 0 0 1 0 1 2 2 1 0 0 1 0 0 14 0 1419.6518 B4E312;A0A075B7D9;Q92804 B4E312 87 100 TAF15 TATA-binding protein-associated factor 2N no no 2 4.2439E-14 139.31 4 2 0.53109 0.70935 7.9862 6 Median 0.53271 0.67403 5.055 4 0 Median 0.51832 0.78094 4.9429 2 0 Median 99461000 64389000 35071000 63035000 40460000 22576000 36426000 23930000 12496000 4111 328 4212 14730;14731;14732;14733;14734;14735 22258;22259;22260;22261;22262;22263;22264;22265;22266;22267;22268 22263 11 GEAVGSITQPLPSSYLIIR FHPLEQSIWAVKGPKGEAVGSITQPLPSSY GSITQPLPSSYLIIRATSESDGRCWMDALE K G E I R A 1 1 0 0 0 1 1 2 0 3 2 0 0 0 2 3 1 0 1 1 0 0 19 0 2000.0942 Q96N80;F8VUA7;F8VQX7;Q641R2;A0A024RBB8;Q5HYM3;Q9BZF1 Q96N80 215 233 OSBPL8;DKFZp686C0249 Oxysterol-binding protein;Oxysterol-binding protein-related protein 8 yes no 2 0.00094562 93.823 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 843960 843960 0 843960 843960 0 0 0 0 4112 268 4213 14736 22269 22269 1 GEAVLRPGLDAEPELSPEEQR LGPEAAPSGEGAGSKGEAVLRPGLDAEPEL PGLDAEPELSPEEQRVLERKLKKERKKEER K G E Q R V 2 2 0 1 0 1 5 2 0 0 3 0 0 0 3 1 0 0 0 1 0 0 21 1 2291.1394 C9JQV0;Q9BRJ6;A0A024R836 C9JQV0 44 64 C7orf50;MGC11257 Uncharacterized protein C7orf50 yes no 3 0.018035 19.755 1 0.74101 0.99339 NaN 1 Median NaN NaN NaN 0 0 Median 0.74101 0.99339 NaN 1 0 Median 4623600 2645500 1978100 0 0 0 4623600 2645500 1978100 4113 944 4214 14737 22270 22270 1 GEDEEENNLEVR PELEARLAHLGVQVKGEDEEENNLEVRETK QVKGEDEEENNLEVRETKIKGKSGRFFTVK K G E V R E 0 1 2 1 0 0 5 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 12 0 1431.6114 Q96HX3;Q6IBR0;Q53EP4;P04843;B4DL99;F8WF32 Q96HX3 51 62 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 0.00074813 83.862 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4660900 1946900 2714000 1946900 1946900 0 2714000 0 2714000 4114 1233 4215 14738;14739 22271;22272 22271 2 GEDLTSEHPLLEQVELPAVASVSASVIK PPPPTLSPAAITVGRGEDLTSEHPLLEQVE VELPAVASVSASVIKSPSDPSHVSVPPPPL R G E I K S 3 0 0 1 0 1 4 1 1 1 4 1 0 0 2 4 1 0 0 4 0 0 28 0 2917.5284 A5YM43;Q8NDX5;E7EX82;B4E2T1;H7C4H9 A5YM43 625 652 PHC3 Polyhomeotic-like protein 3 yes no 3 8.4947E-05 63.372 1 0.93352 1.2051 NaN 1 Median 0.93352 1.2051 NaN 1 0 Median NaN NaN NaN 0 0 Median 3373800 1885900 1487900 3373800 1885900 1487900 0 0 0 4115 561 4216 14740 22273;22274;22275 22273 3 GEDSVPDTVHHVVVPVNPK LSEKIMHFPTWVDLKGEDSVPDTVHHVVVP VPDTVHHVVVPVNPKTDRLWERLGKSHIRT K G E P K T 0 0 1 2 0 0 1 1 2 0 0 1 0 0 3 1 1 0 0 6 0 0 19 0 2024.0327 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 352 370 DDX1 ATP-dependent RNA helicase DDX1 yes no 3 6.621E-11 115.56 4 0.72954 1.0038 5.3371 4 Linear 0.72954 1.0038 5.3371 4 0 Linear NaN NaN NaN 0 0 Median 77638000 41868000 35771000 77638000 41868000 35771000 0 0 0 4116 378 4217 14741;14742;14743;14744 22276;22277;22278;22279;22280;22281;22282 22277 7 GEEEDPEVNVEMSLQDEIQR KMKKARKKAKLHSSKGEEEDPEVNVEMSLQ PEVNVEMSLQDEIQRVTNIKTSAKIKSFDL K G E Q R V 0 1 1 2 0 2 6 1 0 1 1 0 1 0 1 1 0 0 0 2 0 0 20 0 2345.0329 Q5TDG3;Q9UNX4;B3KMW5 Q5TDG3 336 355 WDR3 WD repeat-containing protein 3 yes no 2 0.00017914 42.958 1 0.73285 1.1316 NaN 1 Median NaN NaN NaN 0 0 Median 0.73285 1.1316 NaN 1 0 Median 23843000 13311000 10532000 0 0 0 23843000 13311000 10532000 4117 1576 4218 14745 22283 22283 716 1 GEEILSGAQR PRNPKQSNSYDMFMRGEEILSGAQRIHDPQ DMFMRGEEILSGAQRIHDPQLLTERALHHG R G E Q R I 1 1 0 0 0 1 2 2 0 1 1 0 0 0 0 1 0 0 0 0 0 0 10 0 1058.5356 D3DP78;A0A140VJW5;P14868;Q53T60;H7BZ35 D3DP78 389 398 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.0071705 56.729 1 1.6514 2.1846 NaN 1 Median 1.6514 2.1846 NaN 1 0 Median NaN NaN NaN 0 0 Median 11042000 5271600 5770200 11042000 5271600 5770200 0 0 0 4118 504 4219 14746 22284 22284 1 GEELLSPLNLEQAAYAR STLREALTHRKIIAKGEELLSPLNLEQAAY ELLSPLNLEQAAYARDALAKAVYSRTFTWL K G E A R D 3 1 1 0 0 1 3 1 0 0 4 0 0 0 1 1 0 0 1 0 0 0 17 0 1872.9581 F5H6E2;B7Z3E5;O00159;D3DTH7;B7Z9C0 F5H6E2 338 354 MYO1C Unconventional myosin-Ic yes no 2 1.5881E-43 204.32 4 1 0.74134 1.0098 56.239 5 Median 0.72618 0.98594 4.68 4 0 Median 2.4948 3.4492 NaN 1 0 Median 127110000 70553000 56557000 116760000 67390000 49368000 10351000 3162600 7188500 4119 905 4220 14747;14748;14749;14750;14751 22285;22286;22287;22288;22289;22290;22291;22292;22293 22286 9 GEEPDIAVPK TAQVTFRKTLEKEAKGEEPDIAVPKFKQRK EKEAKGEEPDIAVPKFKQRKGESDGAYIHR K G E P K F 1 0 0 1 0 0 2 1 0 1 0 1 0 0 2 0 0 0 0 1 0 0 10 0 1053.5342 I3L0U5;H6QX63;Q6PK04 I3L0U5 113 122 CCDC137 Coiled-coil domain-containing protein 137 yes no 2 0.020758 44.719 2 0.86196 1.281 2.5735 2 Median NaN NaN NaN 0 0 Median 0.86196 1.281 2.5735 2 0 Median 15802000 8285500 7516100 0 0 0 15802000 8285500 7516100 4120 1112 4221 14752;14753 22294;22295 22295 2 GEETPVIVGSALCALEGRDPELGLK VELEIRELLTEFGYKGEETPVIVGSALCAL ALCALEGRDPELGLKSVQKLLDAVDTYIPV K G E L K S 2 1 0 1 1 0 4 4 0 1 4 1 0 0 2 1 1 0 0 2 0 0 25 1 2609.3371 P49411 P49411 210 234 TUFM Elongation factor Tu, mitochondrial yes yes 3 1.1254E-48 174.91 4 0.47408 0.62404 8.852 4 Median 0.47408 0.62404 8.852 4 0 Median NaN NaN NaN 0 0 Median 72175000 48945000 23230000 72175000 48945000 23230000 0 0 0 4121 1350 4222 14754;14755;14756;14757 22296;22297;22298;22299;22300;22301 22297 6 GEFGGFGSVTGK NDDAQFDASHCDSDKGEFGGFGSVTGKIEC SDKGEFGGFGSVTGKIECEIKINHEGEVNR K G E G K I 0 0 0 0 0 0 1 5 0 0 0 1 0 2 0 1 1 0 0 1 0 0 12 0 1141.5404 Q6FHQ0;Q16576;A8K6A2;Q5JP01 Q6FHQ0 102 113 RBBP7 Histone-binding protein RBBP7 yes no 2 3.2028E-05 76.143 4 2 1.0384 1.4357 38.699 4 Median 0.76709 0.96996 34.681 2 0 Median 1.1379 1.7181 4.6227 2 0 Median 57925000 33891000 24034000 29022000 19612000 9410200 28903000 14279000 14624000 4122 1521 4223 14758;14759;14760;14761;14762;14763 22302;22303;22304;22305;22306;22307;22308;22309 22304 8 GEFTIETEGK DECYITEMEMLLNEKGEFTIETEGKTFQLT LLNEKGEFTIETEGKTFQLTKDMINVKRFQ K G E G K T 0 0 0 0 0 0 3 2 0 1 0 1 0 1 0 0 2 0 0 0 0 0 10 0 1109.5241 A0A090N8G0;P41250;H7C443 A0A090N8G0 484 493 GARS Glycine--tRNA ligase yes no 2 0.034679 83.948 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4123 382 4224 14764 22310 22310 1 GEGAGPPPPLPPAQPGAEGGGDR ______________________________ PLPPAQPGAEGGGDRGLGDRPAPKDKWSNF K G E D R G 3 1 0 1 0 1 2 7 0 0 1 0 0 0 7 0 0 0 0 0 0 0 23 0 2079.9974 Q9NVI7;Q5T9A4;Q96T67 Q9NVI7 13 35 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B no no 2 0.011582 69.431 2 0.46896 0.64751 NaN 1 Median 0.46896 0.64751 NaN 1 0 Median NaN NaN NaN 0 0 Median 1765100 1087900 677180 1765100 1087900 677180 0 0 0 4124 1763;1573 4225 14765;14766 22311;22312 22312 1 GEHPGLSIGDVAK SAFFLFCSEYRPKIKGEHPGLSIGDVAKKL IKGEHPGLSIGDVAKKLGEMWNNTAADDKQ K G E A K K 1 0 0 1 0 0 1 3 1 1 1 1 0 0 1 1 0 0 0 1 0 0 13 0 1278.6568 Q5T7C4;B7Z965;Q59GW1;A0A024RDR0;P09429;B3KQ05;B2RPK0 Q5T7C4 115 127 HMGB1;HMGB1P1 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 2 0.0011334 57.164 2 0.74335 1.1223 4.5923 2 Median NaN NaN NaN 0 0 Median 0.74335 1.1223 4.5923 2 0 Median 24897000 13440000 11457000 0 0 0 24897000 13440000 11457000 4125 322 4226 14767;14768 22313;22314 22314 2 GEHVPGFCLPK EELHKEIRLIGNESKGEHVPGFCLPKKGVT NESKGEHVPGFCLPKKGVTSILPVLREGVL K G E P K K 0 0 0 0 1 0 1 2 1 0 1 1 0 1 2 0 0 0 0 1 0 0 11 0 1239.607 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2248 2258 PRIC295;GCN1L1 Translational activator GCN1 yes no 3 0.00032173 56.043 1 0.4095 0.52714 NaN 1 Median 0.4095 0.52714 NaN 1 0 Median NaN NaN NaN 0 0 Median 4757900 3241500 1516400 4757900 3241500 1516400 0 0 0 4126 1000 4227 14769 22315 22315 1 GEIAQNLLSLVK ENRFAKAGPEGIEPRGEIAQNLLSLVKSDF EPRGEIAQNLLSLVKSDFPIQLEGERLESI R G E V K S 1 0 1 0 0 1 1 1 0 1 3 1 0 0 0 1 0 0 0 1 0 0 12 0 1283.7449 A8K4P8;Q14146;Q6PCC8 A8K4P8 868 879 URB2 Unhealthy ribosome biogenesis protein 2 homolog yes no 2 0.0087295 99.973 2 0.22787 0.30016 NaN 1 Median 0.22787 0.30016 NaN 1 0 Median NaN NaN NaN 0 0 Median 3722700 3295100 427590 3722700 3295100 427590 0 0 0 4127 606 4228 14770;14771 22316;22317 22316 1 GEIDAHEDSFK VAGAEALLDRHQEHKGEIDAHEDSFKSADE QEHKGEIDAHEDSFKSADESGQALLAAGHY K G E F K S 1 0 0 2 0 0 2 1 1 1 0 1 0 1 0 1 0 0 0 0 0 0 11 0 1246.5466 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 408 418 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.011389 80.916 1 0.98019 1.2625 NaN 1 Median 0.98019 1.2625 NaN 1 0 Median NaN NaN NaN 0 0 Median 6910600 3161700 3748900 6910600 3161700 3748900 0 0 0 4128 1476 4229 14772 22318 22318 1 GEIEVVTSSLPELYVEK NESKLVQEALEAVPRGEIEVVTSSLPELYV IEVVTSSLPELYVEKVLEFLASSFEVSRHL R G E E K V 0 0 0 0 0 0 4 1 0 1 2 1 0 0 1 2 1 0 1 3 0 0 17 0 1890.9826 Q15269;A0A0B4J2E5 Q15269 785 801 PWP2 Periodic tryptophan protein 2 homolog yes no 2 4.2317E-14 170 3 1 0.84966 1.0822 3.1471 3 Median 0.87995 1.1117 3.8005 2 0 Median 0.71478 1.0806 NaN 1 0 Median 75418000 32541000 42877000 53016000 21608000 31408000 22402000 10933000 11469000 4129 1508 4230 14773;14774;14775;14776 22319;22320;22321;22322;22323;22324;22325;22326 22325 8 GEIFPSRDPITTAGQPLPGER QTLKNMLDKEVKELRGEIFPSRDPITTAGQ RDPITTAGQPLPGERLEIYVQSKMDEKNAH R G E E R L 1 2 0 1 0 1 2 3 0 2 1 0 0 1 4 1 2 0 0 0 0 0 21 1 2237.144 A0A1B0GUH9;A0A1P0AZG4;A0PJI9 A0A1B0GUH9 897 917 C10orf12 yes no 3 0.04604 13.057 1 1.1995 1.6714 NaN 1 Median NaN NaN NaN 0 0 Median 1.1995 1.6714 NaN 1 0 Median 8214900 4253500 3961400 0 0 0 8214900 4253500 3961400 4130 517 4231 14777 22327 22327 1 GELTTLIHQLQEK EKSGVIQDALKKSSKGELTTLIHQLQEKDK SKGELTTLIHQLQEKDKLLAAVKEDAAATK K G E E K D 0 0 0 0 0 2 2 1 1 1 3 1 0 0 0 0 2 0 0 0 0 0 13 0 1508.8199 A0A024R663;Q86UP2 A0A024R663 325 337 KTN1 Kinectin yes no 2 9.0938E-12 142.97 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17851000 17851000 0 0 0 0 17851000 17851000 0 4131 155 4232 14778 22328 22328 1 GEPETFLPLDYLEVKPTDEK EKTGRDCIQYIKEQRGEPETFLPLDYLEVK FLPLDYLEVKPTDEKLRELKGAKLVIDVIR R G E E K L 0 0 0 2 0 0 4 1 0 0 3 2 0 1 3 0 2 0 1 1 0 0 20 1 2319.1522 Q14683;G8JLG1;Q6P2R1;Q6MZR8;A8K7A6;B7Z709 Q14683 565 584 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3 5.6432E-07 77.037 3 2 0.6579 1.489 42.863 5 Linear 0.65676 0.81643 12.934 3 0 Plateau 1.0151 1.6143 10.575 2 0 Median 53585000 26812000 26773000 25236000 14652000 10584000 28349000 12160000 16189000 4132 1492 4233 14779;14780;14781;14782;14783 22329;22330;22331;22332;22333;22334;22335;22336;22337;22338;22339 22337 11 GEQYVVIIQNK KNIKQNAHIVEWSPRGEQYVVIIQNKIDIY WSPRGEQYVVIIQNKIDIYQLDTASISGTI R G E N K I 0 0 1 0 0 2 1 1 0 2 0 1 0 0 0 0 0 0 1 2 0 0 11 0 1289.698 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 176 186 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 2 2.4987E-16 115.82 1 3 1.0597 1.3138 NaN 1 Median 1.0597 1.3138 NaN 1 0 Median NaN NaN NaN 0 0 Median 85801000 61385000 24416000 41906000 17491000 24416000 43894000 43894000 0 4133 478 4234 14784;14785;14786;14787 22340;22341;22342;22343;22344 22343 5 GESDDFHMDFDSAVAPR FEKIVSKAVTSKKSKGESDDFHMDFDSAVA SDDFHMDFDSAVAPRAKSVRAKKPIKYLEE K G E P R A 2 1 0 4 0 0 1 1 1 0 0 0 1 2 1 2 0 0 0 1 0 0 17 0 1894.7792 P11388 P11388 1493 1509 TOP2A DNA topoisomerase 2-alpha yes yes 3 4.7716E-06 65.107 3 2 0.73967 1.2195 17.383 5 Median 0.7395 1.0434 23.6 3 0 Median 0.74693 1.2224 0.33246 2 0 Median 221670000 124610000 97059000 10022000 5682800 4339600 211650000 118930000 92719000 4134 1256 4235;4236 14788;14789;14790;14791;14792 22345;22346;22347;22348;22349;22350 22349 510 6 GESEFSFEELR DVEQVVMYCKEKLIRGESEFSFEELRAQKY KLIRGESEFSFEELRAQKYNQRRKHEQWVN R G E L R A 0 1 0 0 0 0 4 1 0 0 1 0 0 2 0 2 0 0 0 0 0 0 11 0 1328.5885 B4DYG2;O43683;A0JLU2;A8K5A6 B4DYG2 225 235 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 yes no 2 4.2813E-06 86.882 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4135 873 4237 14793;14794 22351;22352 22352 2 GESSLTALER SQFKGYRRRSSLNGKGESSLTALERIEHNG SLNGKGESSLTALERIEHNGERKQ______ K G E E R I 1 1 0 0 0 0 2 1 0 0 2 0 0 0 0 2 1 0 0 0 0 0 10 0 1061.5353 E9PEI0;Q69YH5;A8K8Z0;B3KRS8 E9PEI0 990 999 CDCA2 Cell division cycle-associated protein 2 yes no 2 6.7435E-06 113.74 1 2 0.50526 0.75178 39.62 3 Median 1.0805 1.4342 NaN 1 0 Median 0.48434 0.72425 5.2756 2 0 Median 44708000 27502000 17207000 13670000 6609700 7059900 31038000 20892000 10147000 4136 1023 4238 14795;14796;14797 22353;22354;22355;22356;22357 22357 5 GETEQDLEADFPSDSFDPLNK NAVQEADSELKQFSKGETEQDLEADFPSDS LEADFPSDSFDPLNKGQGIQARSRTRRRHR K G E N K G 1 0 1 4 0 1 3 1 0 0 2 1 0 2 2 2 1 0 0 0 0 0 21 0 2353.0234 Q5VZL5;H7C1I7 Q5VZL5 1132 1152 ZMYM4 Zinc finger MYM-type protein 4 yes no 2 1.0215E-18 130.72 4 0.78221 1.0323 12.905 3 Median 0.78221 1.0323 12.905 3 0 Median NaN NaN NaN 0 0 Median 9288500 5302400 3986000 9288500 5302400 3986000 0 0 0 4137 1580 4239 14798;14799;14800;14801 22358;22359;22360;22361;22362;22363;22364 22359 7 GETVNDCHAEIISR GTGNRCVKGDSLSLKGETVNDCHAEIISRR KGETVNDCHAEIISRRGFIRFLYSELMKYN K G E S R R 1 1 1 1 1 0 2 1 1 2 0 0 0 0 0 1 1 0 0 1 0 0 14 0 1599.7311 Q59EC0;D3DV75;H0YCK3;A0A024DAK3;P55265;B7Z8Y3 Q59EC0 921 934 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2;3 2.7847E-08 129.76 3 0.46916 0.62741 NaN 1 Median 0.46916 0.62741 NaN 1 0 Median NaN NaN NaN 0 0 Median 9903300 7335100 2568200 9903300 7335100 2568200 0 0 0 4138 1552 4240 14802;14803;14804 22365;22366;22367 22366 3 GEVAYIDGQVLVPPGYGQDVR EGQKVKGTVRRVVLRGEVAYIDGQVLVPPG DGQVLVPPGYGQDVRKWPQGAVPQLPPSAP R G E V R K 1 1 0 2 0 2 1 4 0 1 1 0 0 0 2 0 0 0 2 4 0 0 21 0 2231.1222 Q53SY7;F8VPD4;P27708;H7BZB3 Q53SY7 1716 1736 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.0031825 72.615 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1638200 1638200 0 1638200 1638200 0 0 0 0 4139 1060 4241 14805 22368 22368 1 GEVGLLFTNR DEYKDNLHQVSKRLRGEVGLLFTNRTKEEV SKRLRGEVGLLFTNRTKEEVNEWFTKYTEM R G E N R T 0 1 1 0 0 0 1 2 0 0 2 0 0 1 0 0 1 0 0 1 0 0 10 0 1104.5928 A0A024RAE1;Q9UKD2 A0A024RAE1 98 107 C1orf33;MRTO4 mRNA turnover protein 4 homolog yes no 2 3.1426E-06 118.41 4 1 0.71272 0.95398 13.808 4 Median 0.71272 0.95398 13.808 4 0 Median NaN NaN NaN 0 0 Median 127460000 77730000 49733000 110580000 60843000 49733000 16887000 16887000 0 4140 240 4242 14806;14807;14808;14809;14810 22369;22370;22371;22372;22373;22374 22371 6 GEVLGDVLQLETLK EEHLSQLQDNPPQEKGEVLGDVLQLETLKQ KGEVLGDVLQLETLKQEAATLAANNTQLQA K G E L K Q 0 0 0 1 0 1 2 2 0 0 4 1 0 0 0 0 1 0 0 2 0 0 14 0 1512.8399 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 406 419 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 2.3053E-20 167.2 4 2 0.69413 0.8671 34.281 5 Median 0.71221 0.90751 2.7654 3 0 Median 0.3032 0.48006 5.177 2 0 Median 281090000 202590000 78505000 88180000 55015000 33165000 192910000 147570000 45340000 4141 148;1499;590 4243 14811;14812;14813;14814;14815;14816 22375;22376;22377;22378;22379;22380;22381;22382;22383;22384;22385 22376 11 GEVPVEGNLLEVACHCSSLR EEENVQSEWRLYCVRGEVPVEGNLLEVACH EGNLLEVACHCSSLRSRTSMVVLNVNKALI R G E L R S 1 1 1 0 2 0 3 2 1 0 3 0 0 0 1 2 0 0 0 3 0 0 20 0 2225.0569 O95425;B4E3N7;B4E3H1;A0A0J9YWY6 O95425 1888 1907 SVIL Supervillin yes no 3 2.1746E-16 134.33 3 1.1969 1.6418 23.439 3 Median 1.1969 1.6418 23.439 3 0 Median NaN NaN NaN 0 0 Median 19870000 9656300 10214000 19870000 9656300 10214000 0 0 0 4142 1220 4244 14817;14818;14819 22386;22387;22388;22389 22387 4 GEVTAADLFNSR ETETQNQGIKVAAIRGEVTAADLFNSRVID AIRGEVTAADLFNSRVIDQKTLHTLRVGRT R G E S R V 2 1 1 1 0 0 1 1 0 0 1 0 0 1 0 1 1 0 0 1 0 0 12 0 1278.6204 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 1852 1863 EPPK1 Epiplakin no no 2 0.0030521 62.303 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2872100 2872100 0 2872100 2872100 0 0 0 0 4143 373;1386 4245 14820;14821 22390;22391 22390 2 GFAAFLTELAER QKCPQELSRDPSGTKGFAAFLTELAERVPA GTKGFAAFLTELAERVPAILMSSMRILLDH K G F E R V 3 1 0 0 0 0 2 1 0 0 2 0 0 2 0 0 1 0 0 0 0 0 12 0 1323.6823 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00;A0PJ76 B3KMS0 299 310 NCAPD2 Condensin complex subunit 1 yes no 2 0.00038069 102.06 2 0.65856 0.8949 33.399 2 Median 0.65856 0.8949 33.399 2 0 Median NaN NaN NaN 0 0 Median 4259700 2394400 1865300 4259700 2394400 1865300 0 0 0 4144 757 4246 14822;14823 22392;22393;22394;22395 22394 4 GFAFVEFETK VYISIPHYKSTGDPKGFAFVEFETKEQAAK TGDPKGFAFVEFETKEQAAKAIEFLNNPPE K G F T K E 1 0 0 0 0 0 2 1 0 0 0 1 0 3 0 0 1 0 0 1 0 0 10 0 1173.5706 Q4G0J3;D6RFF0 Q4G0J3 167 176 LARP7 La-related protein 7 yes no 2 0.0062767 87.308 3 0.49029 0.62046 12.85 2 Median 0.49029 0.62046 12.85 2 0 Median NaN NaN NaN 0 0 Median 6543300 4302600 2240700 6543300 4302600 2240700 0 0 0 4145 1534 4247 14824;14825;14826 22396;22397;22398;22399 22399 4 GFAFVQYVNER IFSKYGKIVGCSVHKGFAFVQYVNERNARA SVHKGFAFVQYVNERNARAAVAGEDGRMIA K G F E R N 1 1 1 0 0 1 1 1 0 0 0 0 0 2 0 0 0 0 1 2 0 0 11 0 1328.6513 B2R5W2;G3V4C1;G3V4W0;B4DY08;B3KX96;B2R603;G3V2Q1;P07910;G3V576;A8K9A4;G3V5X6;G3V3K6;G3V251;G3V555;G3V575;B4DMJ1;B4DSU6;G3V4M8 B2R5W2 51 61 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 2 1.5056E-08 130.96 4 2 0.61424 0.84441 17.734 6 Median 0.6019 0.82219 2.7767 4 0 Median 0.71279 1.1606 0.87275 2 0 Median 915870000 571600000 344270000 771840000 488810000 283030000 144030000 82786000 61245000 4146 694 4248 14827;14828;14829;14830;14831;14832 22400;22401;22402;22403;22404;22405;22406;22407;22408;22409;22410;22411 22407 12 GFAFVR GDVYIPRDRYTKESRGFAFVRGPGPGLGPG RDRYTKESRGFAFVRGPGPGLGPGVLPQCP R G F V R G 1 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 1 0 0 6 0 695.37549 B3KX15;J3QL05;J3KP15;Q6NXQ0;Q8N220;B3KVY2;B3KUF7;Q8NAK9;B3KUY1;Q53FN0;A0A024R8U5;A0A024R3A8;Q01130;Q9BRL6;A4D2F7;A4D2F6 B3KX15 56 61 SRSF2;SFRS2;SRP46;SRSF8;LOC346472;LOC392896 Serine/arginine-rich splicing factor 2;Serine/arginine-rich splicing factor 8 yes no 2 0.040479 78.156 1 0.33704 0.44638 NaN 1 Median 0.33704 0.44638 NaN 1 0 Median NaN NaN NaN 0 0 Median 12115000 9310500 2804600 12115000 9310500 2804600 0 0 0 4147 100 4249 14833 22412 22412 1 GFAFVTFDDHDSVDK EVIEIMTDRGSGKKRGFAFVTFDDHDSVDK GFAFVTFDDHDSVDKIVIQKYHTVNGHNCE R G F D K I 1 0 0 4 0 0 0 1 1 0 0 1 0 3 0 1 1 0 0 2 0 0 15 0 1698.7526 F8W6I7;A0A024RB53;A0A024RAZ7;P09651;Q0VAC0;Q6IPF2;A0A024RC46;F8VTQ5;F8VZ49;Q9BSM5;A0A024QZ98;Q32P51;H0YH80 F8W6I7 147 161 HNRNPA1;HNRPA1;hCG_2020860;RP11-78J21.1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2;3 0.0043181 95.618 3 1 0.80531 1.1233 127.56 2 Median 0.35527 0.45577 NaN 1 0 Median 1.8254 2.7684 NaN 1 0 Median 28006000 19504000 8502700 18426000 16251000 2174300 9580800 3252400 6328400 4148 253 4250 14834;14835;14836;14837 22413;22414;22415;22416 22413 4 GFAFVTFESPADAK VEVLLMKDRETNKSRGFAFVTFESPADAKD RGFAFVTFESPADAKDAARDMNGKSLDGKA R G F A K D 3 0 0 1 0 0 1 1 0 0 0 1 0 3 1 1 1 0 0 1 0 0 14 0 1485.714 H0Y6E7;H3BT71;P38159;B4E352;H3BR27;A8K8A6;O75526;Q8N7X1;Q2VIN3;Q96E39;A0A1B0GUK8 H0Y6E7 52 65 RBMX;RBMXL2;RBMXL3;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2;RNA-binding motif protein, X-linked-like-3;RNA binding motif protein, X-linked-like-1 no no 2 1.3052E-35 185.96 4 2 0.86874 1.1089 45.422 6 Median 0.94829 1.2238 4.6677 4 0 Linear 0.3027 0.48136 10.572 2 0 Median 439720000 268400000 171320000 284000000 148150000 135850000 155720000 120260000 35462000 4149 1091;1531 4251 14838;14839;14840;14841;14842;14843 22417;22418;22419;22420;22421;22422;22423;22424;22425;22426;22427;22428 22422 12 GFAFVYFENVDDAK ADVSIVYDQQSRRSRGFAFVYFENVDDAKE RGFAFVYFENVDDAKEAKERANGMELDGRR R G F A K E 2 0 1 2 0 0 1 1 0 0 0 1 0 3 0 0 0 0 1 2 0 0 14 0 1620.746 Q8N1H4;Q68DZ9;Q59GA1;B2RDQ3;P62995;H7BXF3 Q8N1H4 124 137 DKFZp686F18120;TRA2B Transformer-2 protein homolog beta yes no 2 6.6571E-18 149.33 5 2 0.46359 0.57732 31.829 7 Median 0.41188 0.52961 9.0733 5 0 Median 0.68576 1.0295 2.9952 2 0 Median 217120000 147770000 69349000 194880000 135650000 59230000 22241000 12123000 10118000 4150 740 4252 14844;14845;14846;14847;14848;14849;14850 22429;22430;22431;22432;22433;22434;22435;22436;22437;22438;22439;22440 22436 12 GFAFVYFER SGVNVVYDQRTGRSRGFAFVYFERIDDSKE RTGRSRGFAFVYFERIDDSKEAMERANGME R G F E R I 1 1 0 0 0 0 1 1 0 0 0 0 0 3 0 0 0 0 1 1 0 0 9 0 1134.5498 Q549U1;Q13595 Q549U1 161 169 HSU53209;TRA2A Transformer-2 protein homolog alpha yes no 2 0.0076904 94.114 2 2 0.73125 0.97559 56.544 4 Median 0.43645 0.58697 10.603 2 0 Median 1.1949 1.5524 4.4457 2 0 Median 31692000 19797000 11895000 22575000 15785000 6789800 9116700 4011600 5105100 4151 1472 4253 14851;14852;14853;14854 22441;22442;22443;22444;22445 22443 5 GFALVGVGSEASSK LEIKFFENRANGQSKGFALVGVGSEASSKK KGFALVGVGSEASSKKLMDLLPKRELHGQN K G F S K K 2 0 0 0 0 0 1 3 0 0 1 1 0 1 0 3 0 0 0 2 0 0 14 0 1307.6721 F8WJN3;Q16630 F8WJN3 125 138 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 2 0.0088479 94.363 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1375100 1375100 0 1375100 1375100 0 0 0 0 4152 1075 4254 14855 22446 22446 1 GFAYVQFEDVR VDVYVPLDFYTRRPRGFAYVQFEDVRDAED RRPRGFAYVQFEDVRDAEDALHNLDRKWIC R G F V R D 1 1 0 1 0 1 1 1 0 0 0 0 0 2 0 0 0 0 1 2 0 0 11 0 1329.6354 Q5JRI1;Q53GD7;A0A0S2Z504;O75494;Q8WXF0 Q5JRI1 52 62 SRSF10;SRSF12 Serine/arginine-rich splicing factor 10;Serine/arginine-rich splicing factor 12 yes no 2 0.00023901 82.749 1 1 0.585 0.79998 60.581 2 Median 0.39821 0.52124 NaN 1 0 Median 0.85942 1.2278 NaN 1 0 Median 16356000 10443000 5913000 7309800 5231900 2077900 9046200 5211100 3835100 4153 474 4255 14856;14857 22447;22448;22449 22447 3 GFCFLEYEDHK DVILYHQPDDKKKNRGFCFLEYEDHKSAAQ KKNRGFCFLEYEDHKSAAQARRRLMSGKVK R G F H K S 0 0 0 1 1 0 2 1 1 0 1 1 0 2 0 0 0 0 1 0 0 0 11 0 1443.6129 Q05CK9;Q59GL1;B2R8Z8;O60506;B7Z645;Q0VGD6;Q6MZS5;B2R7W4;O43390;B4DT28;B4DMB1;B4DMD1 Q0VGD6 264 274 SYNCRIP;HNRPR;DKFZp686A13234;HNRNPR Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R no no 3 0.012102 62.466 2 0.54415 0.67454 9.7563 2 Median 0.54415 0.67454 9.7563 2 0 Median NaN NaN NaN 0 0 Median 30877000 19982000 10896000 30877000 19982000 10896000 0 0 0 4154 711;718 4256 14858;14859 22450;22451 22450 2 GFCHLCDGQEACCVGLEAGINPTDHLITAYR MELKADQLYKQKIIRGFCHLCDGQEACCVG EAGINPTDHLITAYRAHGFTFTRGLSVREI R G F Y R A 3 1 1 2 4 1 2 4 2 2 3 0 0 1 1 0 2 0 1 1 0 0 31 0 3533.5585 Q5JPU0;Q5JPU1;Q53GE3;A0A024RBX9;P08559 Q5JPU0 89 119 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha;Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 4 0.00017307 50.493 1 0.33754 0.44785 NaN 1 Median 0.33754 0.44785 NaN 1 0 Median NaN NaN NaN 0 0 Median 1154100 822980 331100 1154100 822980 331100 0 0 0 4155 284 4257 14860 22452;22453 22453 2 GFDALQYQEHLDYEIIQSLNPEFNK PSPDNLHTLFEFVFKGFDALQYQEHLDYEI LDYEIIQSLNPEFNKAVIRVNVFREHRQTI K G F N K A 1 0 2 2 0 3 3 1 1 2 3 1 0 2 1 1 0 0 2 0 0 0 25 0 3010.4349 Q05CW7;Q9H0A0;A0A087WV29 Q9H0A0 329 353 NAT10 N-acetyltransferase 10 no no 3 1.1851E-31 149.9 2 0.75467 0.9727 2.082 2 Median 0.75467 0.9727 2.082 2 0 Median NaN NaN NaN 0 0 Median 78913000 43707000 35206000 78913000 43707000 35206000 0 0 0 4156 1730;1443 4258 14861;14862 22454;22455;22456;22457 22457 4 GFDILGIKPVQR WRMLLCEAVAAVMAKGFDILGIKPVQRM__ MAKGFDILGIKPVQRM______________ K G F Q R M 0 1 0 1 0 1 0 2 0 2 1 1 0 1 1 0 0 0 0 1 0 0 12 1 1341.7769 P54136;B4DXW6 P54136 648 659 RARS Arginine--tRNA ligase, cytoplasmic yes no 3 0.010542 64.82 1 0.41848 0.561 NaN 1 Median 0.41848 0.561 NaN 1 0 Median NaN NaN NaN 0 0 Median 3142700 2111200 1031500 3142700 2111200 1031500 0 0 0 4157 1373 4259 14863 22458 22458 1 GFDTSSSSSNSAASSSFK LACESAKPGTKSGFKGFDTSSSSSNSAASS TSSSSSNSAASSSFKFGVSSSSSGPSQTLT K G F F K F 2 0 1 1 0 0 0 1 0 0 0 1 0 2 0 9 1 0 0 0 0 0 18 0 1752.7439 A0A024QZW7;P49790 A0A024QZW7 887 904 NUP153 Nuclear pore complex protein Nup153 yes no 2 0.0042474 76.868 3 0.70908 0.87983 NaN 1 Median 0.70908 0.87983 NaN 1 0 Median NaN NaN NaN 0 0 Median 1998900 1573500 425360 1998900 1573500 425360 0 0 0 4158 22 4260 14864;14865;14866 22459;22460;22461 22459 3 GFEPLIQFAYTAK DGELNITLPEEVTVKGFEPLIQFAYTAKLI VKGFEPLIQFAYTAKLILSKENVDEVCKCV K G F A K L 2 0 0 0 0 1 1 1 0 1 1 1 0 2 1 0 1 0 1 0 0 0 13 0 1483.7711 A8K4Q6;O14867;C9JMP6;C9IYR0;C9IYH8 A8K4Q6 83 95 BACH1 Transcription regulator protein BACH1 yes no 2 0.0069983 42.395 1 0.98707 1.2738 NaN 1 Median 0.98707 1.2738 NaN 1 0 Median NaN NaN NaN 0 0 Median 5956500 2797400 3159100 5956500 2797400 3159100 0 0 0 4159 607 4261 14867 22462;22463 22462 2 GFFDPNTEENLTYLQLK EELSEILSDPSDDTKGFFDPNTEENLTYLQ FDPNTEENLTYLQLKERCIKDEETGLCLLP K G F L K E 0 0 2 1 0 1 2 1 0 0 3 1 0 2 1 0 2 0 1 0 0 0 17 0 2027.984 P15924;Q4LE79 P15924 2414 2430 DSP;DSP variant protein Desmoplakin yes no 2 2.6893E-18 110.08 1 0.77978 0.99 NaN 1 Median 0.77978 0.99 NaN 1 0 Median NaN NaN NaN 0 0 Median 5729500 3183300 2546200 5729500 3183300 2546200 0 0 0 4160 1270 4262 14868 22464 22464 1 GFFDPNTEENLTYLQLMER EEMNEILTDPSDDTKGFFDPNTEENLTYLQ PNTEENLTYLQLMERCITDPQTGLCLLPLK K G F E R C 0 1 2 1 0 1 3 1 0 0 3 0 1 2 1 0 2 0 1 0 0 0 19 0 2316.0732 Q15149;D3DWL0;Q96IE3 Q15149 4226 4244 PLEC;PLEC1 Plectin yes no 2 0.0018312 74.475 4 0.64256 0.86218 6.7316 3 Median 0.64256 0.86218 6.7316 3 0 Median NaN NaN NaN 0 0 Median 11102000 5638900 5463200 11102000 5638900 5463200 0 0 0 4161 1507 4263 14869;14870;14871;14872 22465;22466;22467;22468 22467 4 GFFDPNTHENLTYLQLLER EEMNRVLADPSDDTKGFFDPNTHENLTYLQ PNTHENLTYLQLLERCVEDPETGLCLLPLT K G F E R C 0 1 2 1 0 1 2 1 1 0 4 0 0 2 1 0 2 0 1 0 0 0 19 0 2306.1331 Q15149;D3DWL0;P58107;A0A087X1U6;A0A075B730 Q15149 2989 3007 PLEC;PLEC1;EPPK1 Plectin;Epiplakin no no 3 2.2459E-90 177.64 4 1 0.70835 0.9653 69.628 5 Median 0.69717 0.95372 7.9061 4 0 Median 2.93 4.3719 NaN 1 0 Median 257180000 145400000 111780000 242070000 141190000 100880000 15108000 4210000 10898000 4162 1507;373;1386 4264 14873;14874;14875;14876;14877 22469;22470;22471;22472;22473;22474;22475;22476;22477 22473 9 GFFDPNTHENLTYLQLLQR EEMNRVLADPSDDTKGFFDPNTHENLTYLQ PNTHENLTYLQLLQRATLDPETGLLFLSLS K G F Q R A 0 1 2 1 0 2 1 1 1 0 4 0 0 2 1 0 2 0 1 0 0 0 19 0 2305.1491 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 5053 5071 EPPK1 Epiplakin no no 3 5.5691E-11 117.3 4 1 0.70383 0.97427 70.605 5 Median 0.69507 0.97192 5.2932 4 0 Median 3.2775 4.5821 NaN 1 0 Median 30181000 15844000 14336000 23806000 14582000 9223500 6374900 1262000 5112800 4163 373;1386 4265 14878;14879;14880;14881;14882 22478;22479;22480;22481;22482;22483;22484;22485;22486 22478 8 GFFDPNTHENLTYR EEMNRVLADPSDDTKGFFDPNTHENLTYRQ KGFFDPNTHENLTYRQLLERCVEDPETGLR K G F Y R Q 0 1 2 1 0 0 1 1 1 0 1 0 0 2 1 0 2 0 1 0 0 0 14 0 1709.7798 Q15149;D3DWL0 Q15149 3648 3661 PLEC;PLEC1 Plectin yes no 2;3 7.0782E-05 107.09 4 0.66411 0.89644 36.818 4 Median 0.66411 0.89644 36.818 4 0 Median NaN NaN NaN 0 0 Median 53387000 33078000 20309000 53387000 33078000 20309000 0 0 0 4164 1507 4266 14883;14884;14885;14886 22487;22488;22489;22490 22489 4 GFFDPNTHENLTYVQLLR EEMNRVLADPSDDTKGFFDPNTHENLTYVQ DPNTHENLTYVQLLRRCVPDPDTGLYMLQL K G F L R R 0 1 2 1 0 1 1 1 1 0 3 0 0 2 1 0 2 0 1 1 0 0 18 0 2163.0749 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 2385 2402 EPPK1 Epiplakin no no 3 2.0452E-23 143.28 4 1 0.61374 0.83736 8.3895 4 Median 0.61374 0.83736 8.3895 4 0 Median NaN NaN NaN 0 0 Median 210070000 110930000 99134000 181830000 110930000 70897000 28236000 0 28236000 4165 373;1386 4267 14887;14888;14889;14890;14891 22491;22492;22493;22494;22495;22496;22497;22498;22499;22500 22496 10 GFFEGTIASK IMPLDTNWPLLTVSKGFFEGTIASKGKGGA LTVSKGFFEGTIASKGKGGALAADIDIDTV K G F S K G 1 0 0 0 0 0 1 2 0 1 0 1 0 2 0 1 1 0 0 0 0 0 10 0 1055.5288 P53621 P53621 816 825 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.0011406 113.71 2 0.63172 0.79948 NaN 1 Median 0.63172 0.79948 NaN 1 0 Median NaN NaN NaN 0 0 Median 7697200 5234400 2462900 7697200 5234400 2462900 0 0 0 4166 1371 4268 14892;14893 22501;22502 22502 2 GFFICDQPYEPVSPYSCK LKDLKKGDIIQLQRRGFFICDQPYEPVSPY ICDQPYEPVSPYSCKEAPCVLIYIPDGHTK R G F C K E 0 0 0 1 2 1 1 1 0 1 0 1 0 2 3 2 0 0 2 1 0 0 18 0 2192.9547 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 676 693 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 1.8847E-12 123.95 4 0.55939 0.70886 3.9253 3 Median 0.55939 0.70886 3.9253 3 0 Median NaN NaN NaN 0 0 Median 15587000 10377000 5209700 15587000 10377000 5209700 0 0 0 4167 1242 4269 14894;14895;14896;14897 22503;22504;22505;22506;22507;22508;22509;22510 22505 8 GFGAFER KWHDKTKLASGKLGKGFGAFERSILTQIDH LASGKLGKGFGAFERSILTQIDHILMDKER K G F E R S 1 1 0 0 0 0 1 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 7 0 782.37114 Q9NY61;A0A087WWS8 Q9NY61 384 390 AATF Protein AATF yes no 2 0.030567 76.847 2 0.82255 1.1085 2.5435 2 Median 0.82255 1.1085 2.5435 2 0 Median NaN NaN NaN 0 0 Median 34988000 18558000 16431000 34988000 18558000 16431000 0 0 0 4168 1767 4270 14898;14899 22511;22512 22512 2 GFGFGLVK SYADLGKAARDIFNKGFGFGLVKLDVKTKS ARDIFNKGFGFGLVKLDVKTKSCSGVEFST K G F V K L 0 0 0 0 0 0 0 3 0 0 1 1 0 2 0 0 0 0 0 1 0 0 8 0 823.45922 A0A024QZT0;P45880;A0A0A0MR02;A0A024QZN9;Q5JSD2;Q5JSD1;A2A3S1 A0A024QZT0 32 39 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 1;2 0.015121 77.374 3 2 0.60854 0.79338 86.928 5 Median 0.60854 0.79251 5.4959 3 0 Plateau 2.4598 3.7141 8.028 2 0 Median 250770000 143330000 107440000 217930000 134660000 83261000 32841000 8661300 24180000 4169 20 4271 14900;14901;14902;14903;14904 22513;22514;22515;22516;22517;22518;22519;22520;22521;22522 22516 9 GFGFIR EKYGKAGEVFIHKDKGFGFIRLETRTLAEI GEVFIHKDKGFGFIRLETRTLAEIAKVELD K G F I R L 0 1 0 0 0 0 0 2 0 1 0 0 0 2 0 0 0 0 0 0 0 0 6 0 695.37549 A8K525;A0A0S2Z4Z9;Q15233;H7C367;C9IZL7;C9JYS8;A0A0S2Z4E7;X6RDA4;A0A024RDP4;B4DWI8;Q8WXF1 A8K525 110 115 NONO;PSPC1 Non-POU domain-containing octamer-binding protein;Paraspeckle component 1 yes no 2 0.035657 105.82 3 0.3929 0.54085 9.4982 3 Plateau 0.3929 0.54085 9.4982 3 0 Plateau NaN NaN NaN 0 0 Median 111250000 77062000 34186000 111250000 77062000 34186000 0 0 0 4170 473 4272 14905;14906;14907 22523;22524;22525 22525 3 GFGFVCFSSPEEATK SITSAKVMLEDGRSKGFGFVCFSSPEEATK GFGFVCFSSPEEATKAVTEMNGRIVGSKPL K G F T K A 1 0 0 0 1 0 2 2 0 0 0 1 0 3 1 2 1 0 0 1 0 0 15 0 1661.7396 A0A087WTT1;A0A024R9C1;P11940;A0A024R9E2;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;B3KT93;H0YAR2;Q2VIP3;Q5VX58;Q3ZCS4;Q9H361;Q4VXU2;H0YB86;B1ANR0;Q6IQ30;Q13310;H0Y5F5;Q15164;H0YEU6;Q147Y3;Q3B867;Q53GL4;Q59GZ7 B1ANR0 334 348 PABPC1;PABPC3;PABPC1L;PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 4 no no 2 2.7293E-10 147.26 3 0.20116 0.25801 17.256 2 Median 0.20116 0.25801 17.256 2 0 Median NaN NaN NaN 0 0 Median 37651000 34513000 3138500 37651000 34513000 3138500 0 0 0 4171 676;217 4273 14908;14909;14910 22526;22527;22528;22529;22530;22531 22526 6 GFGFVDFLTK TVRLPKKMTGTGTHRGFGFVDFLTKQDAKR TGTHRGFGFVDFLTKQDAKRAFNALCHSTH R G F T K Q 0 0 0 1 0 0 0 2 0 0 1 1 0 3 0 0 1 0 0 1 0 0 10 0 1129.5808 A0A024RBL4;H0YIL2;Q9Y4C8 Q9Y4C8 692 701 RBM19 Probable RNA-binding protein 19 no no 2 0.0036564 66.621 1 0.39258 0.49495 NaN 1 Median 0.39258 0.49495 NaN 1 0 Median NaN NaN NaN 0 0 Median 2331900 1375700 956190 2331900 1375700 956190 0 0 0 4172 278;1825 4274 14911 22532 22532 1 GFGFVDFNSEEDAK VRARIVTDRETGSSKGFGFVDFNSEEDAKA KGFGFVDFNSEEDAKAAKEAMEDGEIDGNK K G F A K A 1 0 1 2 0 0 2 2 0 0 0 1 0 3 0 1 0 0 0 1 0 0 14 0 1560.6733 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99;Q9BQ02;H7BY16 B3KTP9 534 547 NCL Nucleolin yes no 2 1.8514E-20 169.58 4 2 0.93888 1.2122 6.0622 6 Median 0.94634 1.196 7.7773 4 0 Median 0.76869 1.2246 1.416 2 0 Median 337410000 184610000 152800000 191810000 101480000 90329000 145600000 83129000 62472000 4173 119 4275 14912;14913;14914;14915;14916;14917 22533;22534;22535;22536;22537;22538;22539;22540;22541;22542;22543;22544;22545;22546 22533 14 GFGFVLFK VDCTIKTDPVTGRSRGFGFVLFKDAASVDK PVTGRSRGFGFVLFKDAASVDKVLELKEHK R G F F K D 0 0 0 0 0 0 0 2 0 0 1 1 0 3 0 0 0 0 0 1 0 0 8 0 913.50617 B4DTA2;A0A087WUK2;A0A024RDF6;O14979;D6RF44;D6RBQ9;H0YA96;D6RAF8;H0Y8G5;Q12771;B4DTC3;A0A024RDF4;A0A024RDB4;A0A024RDF3;Q14103 B4DTA2 41 48 HNRNPDL;HNRPDL;HNRNPD;HNRPD Heterogeneous nuclear ribonucleoprotein D-like;Heterogeneous nuclear ribonucleoprotein D0 yes no 2 0.0095336 94.163 3 0.41817 0.54253 1.2246 2 Median 0.41817 0.54253 1.2246 2 0 Median NaN NaN NaN 0 0 Median 9225500 6780800 2444700 9225500 6780800 2444700 0 0 0 4174 315 4276 14918;14919;14920 22547;22548;22549;22550 22549 4 GFGFVQFK VLEVNIPRKPDGKMRGFGFVQFKNLLEAGK KPDGKMRGFGFVQFKNLLEAGKALKGMNMK R G F F K N 0 0 0 0 0 1 0 2 0 0 0 1 0 3 0 0 0 0 0 1 0 0 8 0 928.48069 A0A024R753;Q9NW13;B4DJ90;C9JE21 A0A024R753 155 162 RBM28 RNA-binding protein 28 yes no 2 0.006046 86.113 2 2 0.87875 1.2036 12.75 4 Median 1.0362 1.3134 4.4509 2 0 Median 0.74788 1.0748 8.1081 2 0 Median 27100000 13693000 13407000 14594000 7176900 7417300 12506000 6515600 5989900 4175 169 4277 14921;14922;14923;14924 22551;22552;22553;22554;22555 22552 5 GFGFVSFER ALSVKVMTDESGKSKGFGFVSFERHEDAQK ESGKSKGFGFVSFERHEDAQKAVDEMNGKE K G F E R H 0 1 0 0 0 0 1 2 0 0 0 0 0 3 0 1 0 0 0 1 0 0 9 0 1044.5029 A0A087WTT1;A0A024R9C1;P11940;A0A024R9E2;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;B3KT93;H0YAR2;Q2VIP3;Q5VX58;Q3ZCS4;Q9H361;H0YAP2;A8K8J2 A0A087WTT1 207 215 PABPC1;PABPC3 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 2 0.0011222 119.17 3 0.24441 0.32739 8.7438 3 Median 0.24441 0.32739 8.7438 3 0 Median NaN NaN NaN 0 0 Median 36327000 28967000 7359300 36327000 28967000 7359300 0 0 0 4176 217 4278 14925;14926;14927 22556;22557;22558;22559 22559 4 GFGFVTFDDHDPVDK DTIEIITDRQSGKKRGFGFVTFDDHDPVDK GFGFVTFDDHDPVDKIVLQKYHTINGHNAE R G F D K I 0 0 0 4 0 0 0 2 1 0 0 1 0 3 1 0 1 0 0 2 0 0 15 0 1694.7577 P22626;A0A024RA28;A0A087WUI2;I6L957 P22626 154 168 HNRNPA2B1;HNRPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2;3 0.00023487 105.17 6 2 0.23016 0.2879 132.69 6 Median 0.18985 0.2402 19.885 4 0 Median 2.0728 3.1018 22.051 2 0 Median 169910000 126510000 43398000 150710000 119730000 30985000 19198000 6784500 12413000 4177 1290 4279 14928;14929;14930;14931;14932;14933;14934;14935 22560;22561;22562;22563;22564;22565;22566;22567;22568;22569 22566 10 GFGFVYFQNHDAADK EKAEIIADKQSGKKRGFGFVYFQNHDAADK GFGFVYFQNHDAADKAAVVKFHPIQGHRVE R G F D K A 2 0 1 2 0 1 0 2 1 0 0 1 0 3 0 0 0 0 1 1 0 0 15 0 1714.774 Q13151 Q13151 140 154 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 2;3 0.00017002 121.18 3 3 0.97847 1.3394 129.14 4 Median 0.33564 0.43053 12.201 2 0 Median 2.6946 4.0131 6.8781 2 0 Median 42877000 24248000 18629000 24843000 20133000 4709800 18035000 4115200 13919000 4178 1464 4280 14936;14937;14938;14939;14940;14941 22570;22571;22572;22573;22574;22575;22576;22577;22578;22579 22572 10 GFGGITHGPPEK TGAVKEKITAFVVERGFGGITHGPPEKKMG VERGFGGITHGPPEKKMGIKASNTAEVFFD R G F E K K 0 0 0 0 0 0 1 4 1 1 0 1 0 1 2 0 1 0 0 0 0 0 12 0 1195.5986 B3KPA6;Q53HR2;B4DEA8;P49748 B3KPA6 211 222 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.0072432 47.302 2 1.0918 1.4769 0.37869 2 Median NaN NaN NaN 0 0 Median 1.0918 1.4769 0.37869 2 0 Median 6965100 2965300 3999700 0 0 0 6965100 2965300 3999700 4179 763 4281 14942;14943 22580;22581;22582 22582 3 GFGLEGVPEK PSMMPSPNSHAAGFKGFGLEGVPEKRLTDP AAGFKGFGLEGVPEKRLTDPGLSSLSALST K G F E K R 0 0 0 0 0 0 2 3 0 0 1 1 0 1 1 0 0 0 0 1 0 0 10 0 1031.5288 W5ZR30;Q9UGU0 W5ZR30 437 446 TCF20 Transcription factor 20 yes no 2 0.0063707 58.981 2 1 0.8764 1.1222 38.854 3 Median 0.74426 0.93127 26.374 2 0 Median 1.244 1.6806 NaN 1 0 Median 10769000 6277400 4491200 7101400 4528800 2572700 3667200 1748600 1918600 4180 1783 4282 14944;14945;14946 22583;22584;22585 22585 3 GFGYVTFSMLEDVQR KQCFVVTEKGSKACRGFGYVTFSMLEDVQR GFGYVTFSMLEDVQRALKEITTFEGCKINV R G F Q R A 0 1 0 1 0 1 1 2 0 0 1 0 1 2 0 1 1 0 1 2 0 0 15 0 1747.824 A0A024R753;Q9NW13;C9JAA9;C9JE21;A0A0S2Z5E5 A0A024R753 46 60 RBM28 RNA-binding protein 28 yes no 2 0.009838 49.448 1 1.7958 2.4601 NaN 1 Median 1.7958 2.4601 NaN 1 0 Median NaN NaN NaN 0 0 Median 3001500 1030100 1971500 3001500 1030100 1971500 0 0 0 4181 169 4283 14947 22586 22586 0 GFHQVPFAPIVFIER SLDIQVPNFPADETKGFHQVPFAPIVFIER GFHQVPFAPIVFIERTDFKEEPEPGFKRLA K G F E R T 1 1 0 0 0 1 1 1 1 2 0 0 0 3 2 0 0 0 0 2 0 0 15 0 1755.9461 B4DNN3;Q53HS0;A8K3A8;P47897;Q9H3A5;Q9BUZ3;B4DDN1;Q96AW5;A0A1B0GVU9;H7C0R3;A0A0U1RQX5;A0A0U1RRC8 B4DNN3 552 566 QARS Glutamine--tRNA ligase yes no 3 0.0072651 58.723 2 2 0.9091 1.2153 100.95 4 Median 0.37115 0.52183 9.5243 2 0 Median 2.287 2.9683 16.252 2 0 Median 21828000 11674000 10153000 12735000 9390000 3344600 9093000 2284400 6808700 4182 591 4284 14948;14949;14950;14951 22587;22588;22589;22590;22591;22592 22588 6 GFIAGIDLK NPLYKERHQVQLLGRGFIAGIDLKQQKREQ VQLLGRGFIAGIDLKQQKREQSRFYGDLME R G F L K Q 1 0 0 1 0 0 0 2 0 2 1 1 0 1 0 0 0 0 0 0 0 0 9 0 932.53312 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56 B3KY11 282 290 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.029485 45.68 1 0.87349 1.0865 NaN 1 Median 0.87349 1.0865 NaN 1 0 Median NaN NaN NaN 0 0 Median 8008800 4973100 3035700 8008800 4973100 3035700 0 0 0 4183 45 4285 14952 22593 22593 1 GFIYVHKPPVHIR CSYKASSGLLYPLERGFIYVHKPPVHIRFD ERGFIYVHKPPVHIRFDEISFVNFARGTTT R G F I R F 0 1 0 0 0 0 0 1 2 2 0 1 0 1 2 0 0 0 1 2 0 0 13 1 1561.8882 A0A024R4Z6;Q08945 A0A024R4Z6 358 370 SSRP1 FACT complex subunit SSRP1 yes no 3;4 0.000192 94.465 5 0.80184 1.0659 10.333 5 Median 0.80184 1.0659 10.333 5 0 Median NaN NaN NaN 0 0 Median 194730000 107820000 86913000 194730000 107820000 86913000 0 0 0 4184 132 4286 14953;14954;14955;14956;14957 22594;22595;22596;22597;22598;22599;22600 22598 7 GFLNSSELSGLPAGPDR MHCQTLKDQPSAYSKGFLNSSELSGLPAGP LNSSELSGLPAGPDREGSLKDQLALAIGKL K G F D R E 1 1 1 1 0 0 1 3 0 0 3 0 0 1 2 3 0 0 0 0 0 0 17 0 1715.8479 B4DHY8;E5KS95;P43897;C9JT21;C9JG32;F8VPA7;F8VS27 B4DHY8 122 138 TSFM Elongation factor Ts, mitochondrial;Elongation factor Ts yes no 2 0.00033697 119.25 2 0.21165 0.29533 21.091 2 Median 0.21165 0.29533 21.091 2 0 Median NaN NaN NaN 0 0 Median 6698300 5282700 1415700 6698300 5282700 1415700 0 0 0 4185 809 4287 14958;14959 22601;22602;22603 22603 3 GFLNSSELSGLPAGPDREGSLK MHCQTLKDQPSAYSKGFLNSSELSGLPAGP LSGLPAGPDREGSLKDQLALAIGKLGENMI K G F L K D 1 1 1 1 0 0 2 4 0 0 4 1 0 1 2 4 0 0 0 0 0 0 22 1 2230.123 B4DHY8;E5KS95;P43897;C9JT21;C9JG32;F8VPA7;F8VS27 B4DHY8 122 143 TSFM Elongation factor Ts, mitochondrial;Elongation factor Ts yes no 3 1.535E-09 111.63 3 0.36169 0.4862 4.6577 3 Median 0.36169 0.4862 4.6577 3 0 Median NaN NaN NaN 0 0 Median 30089000 21788000 8301000 30089000 21788000 8301000 0 0 0 4186 809 4288 14960;14961;14962 22604;22605;22606;22607;22608;22609;22610 22606 7 GFLPETK PSATQSPISKKRKKKGFLPETKKRKKRKSE ISKKRKKKGFLPETKKRKKRKSEDGTPAED K G F T K K 0 0 0 0 0 0 1 1 0 0 1 1 0 1 1 0 1 0 0 0 0 0 7 0 790.4225 Q9BQG0;I3L1L3;B4DE42 Q9BQG0 1173 1179 MYBBP1A Myb-binding protein 1A yes no 2 0.030441 63.287 1 0.28684 0.35664 NaN 1 Median 0.28684 0.35664 NaN 1 0 Median NaN NaN NaN 0 0 Median 16700000 13322000 3377300 16700000 13322000 3377300 0 0 0 4187 1708 4289 14963 22611 22611 1 GFLTERDDILCPDCGK DCFNCKKCSLSLVGRGFLTERDDILCPDCG FLTERDDILCPDCGKDI_____________ R G F G K D 0 1 0 3 2 0 1 2 0 1 2 1 0 1 1 0 1 0 0 0 0 0 16 1 1894.8553 I0CE67;Q6I9R8;Q2XQU9;J3KNW4;A0A0A0MSG2;Q14192;Q53T40 I0CE67 252 267 FHL2 Four and a half LIM domains protein 2 yes no 3 0.00047216 42.813 2 0.57203 0.7374 23.336 2 Median 0.57203 0.7374 23.336 2 0 Median NaN NaN NaN 0 0 Median 19686000 11184000 8501900 19686000 11184000 8501900 0 0 0 4188 396 4290 14964;14965 22612;22613 22612 2 GFNEGLWEIDNNPK YSENKEKYGKPNKRKGFNEGLWEIDNNPKV KGFNEGLWEIDNNPKVKFSSQQAATKQSNA K G F P K V 0 0 3 1 0 0 2 2 0 1 1 1 0 1 1 0 0 1 0 0 0 0 14 0 1631.758 O75475;Q05CM9 O75475 76 89 PSIP1 PC4 and SFRS1-interacting protein yes no 2 0.014188 35.677 1 0.6185 0.92955 NaN 1 Median NaN NaN NaN 0 0 Median 0.6185 0.92955 NaN 1 0 Median 13171000 8470700 4699800 0 0 0 13171000 8470700 4699800 4189 1201 4291 14966 22614 22614 1 GFNLPYQDAR EQLRMEETPTEYLQRGFNLPYQDARKCLGR EYLQRGFNLPYQDARKCLGRFGLESHAHTI R G F A R K 1 1 1 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 1 0 0 0 10 0 1179.5673 Q8NE71;Q2L6I2;Q59F96;H0YGW7;A0A0G2JIC2 Q8NE71 714 723 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 0.018888 46.335 1 0.67928 0.99244 NaN 1 Median NaN NaN NaN 0 0 Median 0.67928 0.99244 NaN 1 0 Median 14133000 8334600 5798900 0 0 0 14133000 8334600 5798900 4190 1653 4292 14967 22615 22615 1 GFQEDSEIR AFPVGNAFSYYQSNRGFQEDSEIRAAEKKF YYQSNRGFQEDSEIRAAEKKFGSNKAEMVV R G F I R A 0 1 0 1 0 1 2 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 9 0 1079.4884 A0A024R7N2;Q9HD20;A0A024R7P3;H7C3H2 A0A024R7N2 208 216 ATP13A1 Manganese-transporting ATPase 13A1 yes no 2 0.046718 43.769 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2079900 0 2079900 0 0 0 2079900 0 2079900 4191 181 4293 14968 22616 22616 1 GFQEVVTPNIFNSR YNALIEFIRSEYRKRGFQEVVTPNIFNSRL RGFQEVVTPNIFNSRLWMTSGHWQHYSENM R G F S R L 0 1 2 0 0 1 1 1 0 1 0 0 0 2 1 1 1 0 0 2 0 0 14 0 1606.8104 Q5M7Z9;Q53GX7;P26639;B4DKZ9;B3KTN2;B2RDX5 Q5M7Z9 368 381 TARS Threonine--tRNA ligase, cytoplasmic yes no 2 3.529E-05 111.52 2 0.31882 0.45 NaN 1 Median 0.31882 0.45 NaN 1 0 Median NaN NaN NaN 0 0 Median 13229000 12085000 1143500 13229000 12085000 1143500 0 0 0 4192 1298 4294 14969;14970 22617;22618 22617 2 GFQQISFVNSIATSK QVNHRWEVCLTMSEKGFQQISFVNSIATSK GFQQISFVNSIATSKGGRHVDYVADQIVTK K G F S K G 1 0 1 0 0 2 0 1 0 2 0 1 0 2 0 3 1 0 0 1 0 0 15 0 1625.8413 P11388 P11388 307 321 TOP2A DNA topoisomerase 2-alpha yes yes 2 2.2199E-50 225.55 4 2 0.87563 1.2413 5.5837 6 Median 0.90191 1.1989 5.636 4 0 Median 0.81315 1.2787 0.37327 2 0 Median 2390400000 1275700000 1114600000 1406400000 728300000 678140000 983930000 547430000 436510000 4193 1256 4295 14971;14972;14973;14974;14975;14976 22619;22620;22621;22622;22623;22624;22625;22626;22627;22628;22629;22630;22631;22632;22633;22634;22635;22636 22621 18 GFQQISFVNSIATTK LANERWDVCLTLSEKGFQQISFVNSIATTK GFQQISFVNSIATTKGGRHVDYVVDQVVGK K G F T K G 1 0 1 0 0 2 0 1 0 2 0 1 0 2 0 2 2 0 0 1 0 0 15 0 1639.857 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 300 314 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 7.851E-28 186.76 3 0.66081 0.84205 4.5851 3 Median 0.66081 0.84205 4.5851 3 0 Median NaN NaN NaN 0 0 Median 106170000 66946000 39221000 106170000 66946000 39221000 0 0 0 4194 1437 4296 14977;14978;14979 22637;22638;22639;22640;22641;22642 22637 6 GFSAEQIAR KGKPKRGDTYELQVRGFSAEQIARWIADRT YELQVRGFSAEQIARWIADRTDVNIRVIRP R G F A R W 2 1 0 0 0 1 1 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 9 0 977.49304 Q96SP2;B4DH58;A0A087WU53;Q9H0U3 Q96SP2 43 51 MAGT1 Magnesium transporter protein 1 yes no 2 0.0058804 72.485 2 0.74931 1.012 0.40635 2 Median 0.74931 1.012 0.40635 2 0 Median NaN NaN NaN 0 0 Median 22907000 12523000 10384000 22907000 12523000 10384000 0 0 0 4195 339 4297 14980;14981 22643;22644;22645 22645 3 GFSDKLDFLEGDQK QEKAHMMNAIKKYQKGFSDKLDFLEGDQKP KGFSDKLDFLEGDQKPLAQRKKAGAKGQQM K G F Q K P 0 0 0 3 0 1 1 2 0 0 2 2 0 2 0 1 0 0 0 0 0 0 14 1 1597.7624 Q6IB29;H7C2Q8;Q99848 Q6IB29 205 218 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2;3 3.7978E-14 154.1 6 0.97465 1.1941 19.471 3 Median 0.97465 1.1941 19.471 3 0 Median NaN NaN NaN 0 0 Median 205980000 60735000 145250000 205980000 60735000 145250000 0 0 0 4196 1123 4298 14982;14983;14984;14985;14986;14987 22646;22647;22648;22649;22650;22651;22652;22653 22652 8 GFSEAAAPR ADLESLLQTPGGKPRGFSEAAAPRAFGLHC PGGKPRGFSEAAAPRAFGLHCRLSIHLQHK R G F P R A 3 1 0 0 0 0 1 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 9 0 904.44028 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 812 820 NCAPG2 Condensin-2 complex subunit G2 yes no 2 0.00094247 107.59 3 1 0.83765 1.1294 14.279 2 Median 0.83765 1.1294 14.279 2 0 Median NaN NaN NaN 0 0 Median 49782000 31909000 17873000 41371000 23498000 17873000 8410700 8410700 0 4197 1621 4299 14988;14989;14990;14991 22654;22655;22656;22657 22655 4 GFSEEHNTWEPEK RRVVKGQVEYLLKWKGFSEEHNTWEPEKNL WKGFSEEHNTWEPEKNLDCPELISEFMKKY K G F E K N 0 0 1 0 0 0 4 1 1 0 0 1 0 1 1 1 1 1 0 0 0 0 13 0 1588.6794 V9HWG0;P45973;Q6I9T7;F8VNY3 V9HWG0 43 55 HEL25;CBX5 Chromobox protein homolog 5 yes no 3 0.0063223 34.326 1 0.22885 0.34779 NaN 1 Median NaN NaN NaN 0 0 Median 0.22885 0.34779 NaN 1 0 Median 12478000 9576100 2901600 0 0 0 12478000 9576100 2901600 4198 1341 4300 14992 22658 22658 1 GFSLEELR RCTTVRYHTKVRAGRGFSLEELRVAGIHKK TKVRAGRGFSLEELRVAGIHKKVARTIGIS R G F L R V 0 1 0 0 0 0 2 1 0 0 2 0 0 1 0 1 0 0 0 0 0 0 8 0 949.4869 Q6NZ55;A8K4C8;P26373;J3QSB4 Q6NZ55 75 82 RPL13 60S ribosomal protein L13 yes no 1;2 0.00090321 120.62 4 2 0.65914 0.90178 12.289 6 Median 0.73097 0.99895 10.63 4 0 Median 0.49062 0.80915 0.41287 2 0 Median 1871500000 1134600000 736970000 1484500000 875070000 609470000 386980000 259490000 127490000 4199 604 4301 14993;14994;14995;14996;14997;14998 22659;22660;22661;22662;22663;22664;22665;22666;22667;22668;22669;22670 22663 12 GFSLLATEDK EELGFRPEYSASQLKGFSLLATEDKEALKK ASQLKGFSLLATEDKEALKKQLPGVKSEGK K G F D K E 1 0 0 1 0 0 1 1 0 0 2 1 0 1 0 1 1 0 0 0 0 0 10 0 1079.5499 A0A024R3T8;P09874;B4E0E1;B2R5W3;Q05D33;Q6PJL0;Q96P95 A0A024R3T8 183 192 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 4.9884E-08 130.75 4 2 1.0481 1.3612 40.972 6 Median 1.0602 1.3795 1.3822 4 0 Median 0.39153 0.62076 0.84177 2 0 Median 521910000 302480000 219430000 345210000 172050000 173160000 176700000 130430000 46267000 4200 107 4302 14999;15000;15001;15002;15003;15004 22671;22672;22673;22674;22675;22676;22677;22678;22679;22680;22681;22682;22683;22684;22685 22681 15 GFSSGSAVVSGGSR SCKSRGRGGGGGGFRGFSSGSAVVSGGSRR RGFSSGSAVVSGGSRRSTSSFSCLSRHGGG R G F S R R 1 1 0 0 0 0 0 4 0 0 0 0 0 1 0 5 0 0 0 2 0 0 14 0 1253.6 CON__P35908;P35908 CON__P35908 21 34 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 6.2242E-05 74.76 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18488000 18488000 0 0 0 0 18488000 18488000 0 + 4201 964 4303 15005 22686 22686 1 GFTAAGVLAAHK VGFIGAGQLAFALAKGFTAAGVLAAHKIMA LAKGFTAAGVLAAHKIMASSPDMDLATVSA K G F H K I 4 0 0 0 0 0 0 2 1 0 1 1 0 1 0 0 1 0 0 1 0 0 12 0 1141.6244 E7D7X9;A0A024R8U9;P32322;B7Z8T1;J3KQ22;E2QRB3;E7D7Y0;A0A1B2JLU7;J3QL24;J3QR88;J3QLK9;J3QL23;J3QL32;J3KTA8;J3QKT3;J3QRZ0 E7D7X9 18 29 PYCR1 Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 1, mitochondrial yes no 2 0.016137 54.416 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4202 204 4304 15006 22687 22687 1 GFTESFGAANISQAAR LSGQAQPPEGSEDPRGFTESFGAANISQAA FTESFGAANISQAARERDCESVCFIGRPWR R G F A R E 4 1 1 0 0 1 1 2 0 1 0 0 0 2 0 2 1 0 0 0 0 0 16 0 1625.7798 Q6AHZ7;Q12789;Q6AWA4;H3BU37 Q6AHZ7 1958 1973 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 7.2796E-06 108.56 6 1 0.79956 1.1549 80.855 2 Median 0.46447 0.65202 NaN 1 0 Median 1.3764 2.0458 NaN 1 0 Median 16400000 10071000 6328300 9781500 7355900 2425700 6618200 2715600 3902600 4203 1457 4305 15007;15008;15009;15010;15011;15012;15013 22688;22689;22690;22691;22692;22693;22694;22695;22696 22691 9 GFTGIDSDYEKPETPER DVKGLYKRARAGEIKGFTGIDSDYEKPETP TGIDSDYEKPETPERVLKTNLSTVSDCVHQ K G F E R V 0 1 0 2 0 0 3 2 0 1 0 1 0 1 2 1 2 0 1 0 0 0 17 1 1939.88 Q5TB52;B4DWB5;O95340 Q5TB52 174 190 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes no 2;3 1.9999E-05 116.79 4 0.37758 0.49773 25.235 2 Median 0.37758 0.49773 25.235 2 0 Median NaN NaN NaN 0 0 Median 31808000 23324000 8483800 31808000 23324000 8483800 0 0 0 4204 865 4306 15014;15015;15016;15017 22697;22698;22699;22700 22699 4 GFTIPEAFR LPKLHIVQVVCKKYRGFTIPEAFRGVHRYL VCKKYRGFTIPEAFRGVHRYLSNAYAREEF R G F F R G 1 1 0 0 0 0 1 1 0 1 0 0 0 2 1 0 1 0 0 0 0 0 9 0 1036.5342 Q5SRT3;Q53FB0;O00299 Q5SRT3 196 204 CLIC1 Chloride intracellular channel protein;Chloride intracellular channel protein 1 yes no 2 0.0053124 72.485 2 0.54771 0.74646 2.359 2 Median 0.54771 0.74646 2.359 2 0 Median NaN NaN NaN 0 0 Median 8652400 5293900 3358500 8652400 5293900 3358500 0 0 0 4205 1166 4307 15018;15019 22701;22702 22701 2 GFTLNDAANSR TQAMEVKAFAETHIKGFTLNDAANSRLIIT THIKGFTLNDAANSRLIITQVRRDYLKEAV K G F S R L 2 1 2 1 0 0 0 1 0 0 1 0 0 1 0 1 1 0 0 0 0 0 11 0 1164.5523 E5KNY5;P42704;B4DSR0 E5KNY5 1099 1109 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.036544 53.756 1 0.34366 0.46553 NaN 1 Median 0.34366 0.46553 NaN 1 0 Median NaN NaN NaN 0 0 Median 8454500 6135000 2319500 8454500 6135000 2319500 0 0 0 4206 1001 4308 15020 22703 22703 0 GFTLVGMKMLQVWEGYNVVR QRRLVGDVIQRFERRGFTLVGMKMLQVWEG GMKMLQVWEGYNVVRASRAMIGHTDSAEAA R G F V R A 0 1 1 0 0 1 1 3 0 0 2 1 2 1 0 0 1 1 1 4 0 0 20 1 2326.1966 A0A087WVT9 A0A087WVT9 65 84 NME4 Nucleoside diphosphate kinase yes yes 3 0.038162 14.77 2 1 0.88849 1.1578 21.827 3 Median 0.88537 1.152 0.70618 2 0 Median 1.0837 1.6811 NaN 1 0 Median 72115000 35161000 36954000 63810000 31516000 32294000 8304500 3644700 4659800 4207 351 4309 15021;15022;15023 22704;22705;22706 22704 3 GFVEIQTPK QSGICHLFRETLINKGFVEIQTPKIISAAS ETLINKGFVEIQTPKIISAASEGGANVFTV K G F P K I 0 0 0 0 0 1 1 1 0 1 0 1 0 1 1 0 1 0 0 1 0 0 9 0 1017.5495 D3DP78;A0A140VJW5;P14868;Q53T60 D3DP78 181 189 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.020343 52.255 1 0.40794 0.51416 NaN 1 Median 0.40794 0.51416 NaN 1 0 Median NaN NaN NaN 0 0 Median 8982300 5890000 3092300 8982300 5890000 3092300 0 0 0 4208 504 4310 15024 22707 22707 1 GFVHPDPLWIPFK QEHRLFERLRETVTKGFVHPDPLWIPFKEV TKGFVHPDPLWIPFKEVAVTLIYQLAEGPE K G F F K E 0 0 0 1 0 0 0 1 1 1 1 1 0 2 3 0 0 1 0 1 0 0 13 0 1551.8238 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 856 868 NCAPD2 Condensin complex subunit 1 yes no 2;3 0.0037158 51.092 2 0.29155 0.44086 NaN 1 Median NaN NaN NaN 0 0 Median 0.29155 0.44086 NaN 1 0 Median 25396000 20802000 4593700 0 0 0 25396000 20802000 4593700 4209 757 4311 15025;15026 22708;22709;22710 22708 3 GFVLQDTVEQLR QTKITQDIFQQLLKRGFVLQDTVEQLRCEH LKRGFVLQDTVEQLRCEHCARFLADRFVEG R G F L R C 0 1 0 1 0 2 1 1 0 0 2 0 0 1 0 0 1 0 0 2 0 0 12 0 1403.7409 A8K492;P56192;B4DF61;B4E0E9;H0YHV5;H0YIC2 A8K492 377 388 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 0.0010539 117.02 2 2 0.49737 0.70577 NaN 1 Median 0.49737 0.70577 NaN 1 0 Median NaN NaN NaN 0 0 Median 10046000 2692300 7354200 3181100 2692300 488790 6865400 0 6865400 4210 602 4312 15027;15028;15029;15030 22711;22712;22713;22714 22713 4 GFVQVDDGRK YQDRMNDIVKEFEDRGFVQVDDGRKIVFVP EFEDRGFVQVDDGRKIVFVPGCSIPLTIVK R G F R K I 0 1 0 2 0 1 0 2 0 0 0 1 0 1 0 0 0 0 0 2 0 0 10 1 1119.5673 P54136;B4DXW6 P54136 353 362 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 3.9214E-05 103.56 2 1 0.52613 0.67068 NaN 1 Median 0.52613 0.67068 NaN 1 0 Median NaN NaN NaN 0 0 Median 15305000 8019900 7285000 10971000 8019900 2950900 4334100 0 4334100 4211 1373 4313 15031;15032;15033 22715;22716;22717;22718 22717 4 GFYDPPRR HRYIEIFRSSRSEIKGFYDPPRRLLGQRPG SSRSEIKGFYDPPRRLLGQRPGPYDRPIGG K G F R R L 0 2 0 1 0 0 0 1 0 0 0 0 0 1 2 0 0 0 1 0 0 0 8 1 1006.4985 Q53F48;A0A024QZK8;P31942 Q53F48 98 105 HNRPH3;HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 3 0.018876 29.376 2 0.34491 0.4552 0.53276 2 Median 0.34491 0.4552 0.53276 2 0 Median NaN NaN NaN 0 0 Median 23765000 19645000 4120000 23765000 19645000 4120000 0 0 0 4212 15 4314 15034;15035 22719;22720 22719 2 GFYIYQEGVK TQMVSKGFLGRKSGKGFYIYQEGVKRKDLN RKSGKGFYIYQEGVKRKDLNSDMDSILASL K G F V K R 0 0 0 0 0 1 1 2 0 1 0 1 0 1 0 0 0 0 2 1 0 0 10 0 1202.5972 B4DDZ5;H0YFD6;E9KL44;P40939;B4DRH6 E9KL44 635 644 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase no no 2 0.034444 40.882 1 1 0.84454 1.1093 36.63 2 Median 0.68878 0.85615 NaN 1 0 Median 1.0355 1.4372 NaN 1 0 Median 13010000 7658000 5351800 8281600 5648100 2633500 4728200 2009900 2718300 4213 1020;797 4315 15036;15037 22721;22722 22721 2 GGAANQALLHSK FNLSSSISSENSLIKGGAANQALLHSKSKQ LIKGGAANQALLHSKSKQPKFRSIKCKHKE K G G S K S 3 0 1 0 0 1 0 2 1 0 2 1 0 0 0 1 0 0 0 0 0 0 12 0 1165.6204 B2RWP5;Q96L73;Q8NB95;Q96MN8;A4QPE5 B2RWP5 501 512 NSD1 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 2 0.042054 33.088 1 0.89099 1.1707 NaN 1 Median NaN NaN NaN 0 0 Median 0.89099 1.1707 NaN 1 0 Median 2666800 1465900 1200900 0 0 0 2666800 1465900 1200900 4214 749 4316 15038 22723 22723 1 GGAAVDPDSGLEHSAHVLEK EGINKSEKRMKLTLKGGAAVDPDSGLEHSA DPDSGLEHSAHVLEKGGKVFSATLGLVDIV K G G E K G 3 0 0 2 0 0 2 3 2 0 2 1 0 0 1 2 0 0 0 2 0 0 20 0 1987.9599 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 529 548 PARP1 Poly [ADP-ribose] polymerase 1 yes no 3;4 1.9221E-20 144.25 5 3 1.0467 1.3699 40.029 8 Median 1.085 1.4221 3.9623 5 0 Median 0.4135 0.65701 1.5622 3 0 Median 745800000 416940000 328860000 476850000 226850000 250000000 268950000 190090000 78863000 4215 107 4317 15039;15040;15041;15042;15043;15044;15045;15046 22724;22725;22726;22727;22728;22729;22730;22731;22732;22733;22734;22735;22736 22731 13 GGAEGELQALR IRVVRLQLEATERQRGGAEGELQALRARAE ERQRGGAEGELQALRARAEEAEAQKRQAQE R G G L R A 2 1 0 0 0 1 2 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1099.5622 Q15149 Q15149 1606 1616 PLEC Plectin yes yes 2 0.00041311 118.18 4 0.85675 1.1401 9.2678 2 Median 0.85675 1.1401 9.2678 2 0 Median NaN NaN NaN 0 0 Median 28347000 14043000 14304000 28347000 14043000 14304000 0 0 0 4216 1507 4318 15047;15048;15049;15050 22737;22738;22739;22740;22741 22738 5 GGDDLGTEIANTLYR FVDCSASATPEFEGRGGDDLGTEIANTLYR GGDDLGTEIANTLYRIFNNKSSVDLKTLCI R G G Y R I 1 1 1 2 0 0 1 3 0 1 2 0 0 0 0 0 2 0 1 0 0 0 15 0 1593.7635 B2RDZ9;A0A024R2P7;Q15024;B4DIU0 B2RDZ9 97 111 EXOSC7 Exosome complex component RRP42 yes no 2 3.7412E-10 136.81 4 2 0.61217 0.84284 21.651 6 Median 0.70719 0.96684 16.177 4 0 Median 0.4386 0.68807 1.5777 2 0 Median 99228000 62903000 36325000 38901000 20886000 18016000 60327000 42017000 18310000 4217 91 4319 15051;15052;15053;15054;15055;15056 22742;22743;22744;22745;22746;22747;22748;22749;22750;22751;22752 22747 11 GGEADNLDEFLK CLTPLVPEDLRKRRKGGEADNLDEFLKEFE RRKGGEADNLDEFLKEFENPEVPREDQQQQ K G G L K E 1 0 1 2 0 0 2 2 0 0 2 1 0 1 0 0 0 0 0 0 0 0 12 0 1306.6041 A0A024R9J0;O60216 A0A024R9J0 407 418 RAD21 Double-strand-break repair protein rad21 homolog yes no 2 0.0055648 50.284 1 0.63458 0.9633 NaN 1 Median NaN NaN NaN 0 0 Median 0.63458 0.9633 NaN 1 0 Median 10095000 6269600 3825800 0 0 0 10095000 6269600 3825800 4218 223 4320 15057 22753;22754 22753 2 GGELVYTDSEAR ETGLCLLPLTDKAAKGGELVYTDSEARDVF AAKGGELVYTDSEARDVFEKATVSAPFGKF K G G A R D 1 1 0 1 0 0 2 2 0 0 1 0 0 0 0 1 1 0 1 1 0 0 12 0 1295.5994 Q15149;D3DWL0 Q15149 3028 3039 PLEC;PLEC1 Plectin yes no 2 4.6817E-05 105.2 4 2 0.80982 1.0993 52.408 6 Median 0.72928 0.98897 17.024 4 0 Median 2.0047 2.6126 11.987 2 0 Median 83840000 47659000 36181000 74074000 44729000 29345000 9765600 2929300 6836300 4219 1507 4321 15058;15059;15060;15061;15062;15063 22755;22756;22757;22758;22759;22760;22761;22762;22763 22761 9 GGELVYTDSEARDVFEK ETGLCLLPLTDKAAKGGELVYTDSEARDVF ELVYTDSEARDVFEKATVSAPFGKFQGKTV K G G E K A 1 1 0 2 0 0 3 2 0 0 1 1 0 1 0 1 1 0 1 2 0 0 17 1 1913.9007 Q15149;D3DWL0 Q15149 3028 3044 PLEC;PLEC1 Plectin yes no 3 0.00016886 62.69 2 0.78132 1.0056 NaN 1 Median 0.78132 1.0056 NaN 1 0 Median NaN NaN NaN 0 0 Median 12537000 6061700 6475300 12537000 6061700 6475300 0 0 0 4220 1507 4322 15064;15065 22764;22765 22765 2 GGFAVQAK ______________________________ ATKRKRRGGFAVQAKKPKRNEIDAEPPAKR R G G A K K 2 0 0 0 0 1 0 2 0 0 0 1 0 1 0 0 0 0 0 1 0 0 8 0 776.41809 Q8TDN6;A0JLQ5;B4E0B8;Q9NUW4;Q05CP8 Q8TDN6 10 17 BRIX1;BXDC2;CCDC6 Ribosome biogenesis protein BRX1 homolog yes no 2 0.043076 44.692 1 0.87966 1.3357 NaN 1 Median NaN NaN NaN 0 0 Median 0.87966 1.3357 NaN 1 0 Median 12972000 6865800 6106200 0 0 0 12972000 6865800 6106200 4221 1659 4323 15066 22766 22766 1 GGFDGEYQDDSLDLLR QERAWYDNHREALLKGGFDGEYQDDSLDLL GFDGEYQDDSLDLLRYFTVTCYSGYGDDEK K G G L R Y 0 1 0 4 0 1 1 3 0 0 3 0 0 1 0 1 0 0 1 0 0 0 16 0 1798.801 Q5F1R6 Q5F1R6 75 90 DNAJC21 DnaJ homolog subfamily C member 21 yes yes 2 3.1279E-23 158.34 3 0.81952 1.1083 14.424 2 Median 0.81952 1.1083 14.424 2 0 Median NaN NaN NaN 0 0 Median 11452000 6854600 4597600 11452000 6854600 4597600 0 0 0 4222 1556 4324 15067;15068;15069 22767;22768;22769;22770 22769 4 GGFVPYR LCLGNVISALGDDKKGGFVPYRDSKLTRLL SALGDDKKGGFVPYRDSKLTRLLQDSLGGN K G G Y R D 0 1 0 0 0 0 0 2 0 0 0 0 0 1 1 0 0 0 1 1 0 0 7 0 794.40752 Q59HG1;O95239;Q6PKB2 Q59HG1 286 292 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 0.026154 68.033 1 0.64835 0.96927 NaN 1 Median NaN NaN NaN 0 0 Median 0.64835 0.96927 NaN 1 0 Median 15714000 9172000 6541600 0 0 0 15714000 9172000 6541600 4223 1216 4325 15070 22771 22771 1 GGGAFVQNSQPVAVR GQHPAASPTHPSAIRGGGAFVQNSQPVAVR GGGAFVQNSQPVAVRGGGGKQV________ R G G V R G 2 1 1 0 0 2 0 3 0 0 0 0 0 1 1 1 0 0 0 3 0 0 15 0 1485.7688 V9HW29;D3DRX6;P33176;B4DS27 V9HW29 942 956 HEL-S-61;KIF5B Kinesin-like protein;Kinesin-1 heavy chain yes no 2 0.0062296 46.796 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3686500 0 3686500 0 0 0 3686500 0 3686500 4224 978 4326 15071 22772 22772 1 GGGATGPGGAEPGEDTALLR GRGNGAERVRVALRRGGGATGPGGAEPGED GPGGAEPGEDTALLRLLGLRRGLRRLRRLW R G G L R L 3 1 0 1 0 0 2 7 0 0 2 0 0 0 2 0 2 0 0 0 0 0 20 0 1781.8544 Q9UMN6;A0A0G2R4E5 Q9UMN6 50 69 KMT2B Histone-lysine N-methyltransferase 2B yes no 2 4.2169E-07 71.879 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2266700 2266700 0 2266700 2266700 0 0 0 0 4225 1794 4327 15072 22773 22773 1 GGGEGNVDETGNNPSVSLK DNDVEVIKVWNSRSRGGGEGNVDETGNNPS GNVDETGNNPSVSLKLEESKATSSSNPSSP R G G L K L 0 0 3 1 0 0 2 5 0 0 1 1 0 0 1 2 1 0 0 2 0 0 19 0 1829.8391 A4LAA3;P46100;B4DHH8;B4DLE1;A0A096LNX6 A4LAA3 1964 1982 ATRX Transcriptional regulator ATRX yes no 2 0.0006411 48.659 1 1 0.85356 1.2824 NaN 1 Median NaN NaN NaN 0 0 Median 0.85356 1.2824 NaN 1 0 Median 16728000 9893700 6834700 3624800 3624800 0 13104000 6268900 6834700 4226 556 4328 15073;15074 22774;22775 22774 2 GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR SVSTSHTTISGGGSRGGGGGGYGSGGSSYG GGGSYGSGGGGGGGRGSYGSGGSSYGSGGG R G G G R G 0 1 0 0 0 0 0 21 0 0 0 0 0 0 0 6 0 0 3 0 0 0 31 0 2382.9446 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 519 549 KRT1 Keratin, type II cytoskeletal 1 no no 2;3 1.1778E-147 261.66 5 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 902070000 902070000 0 271990000 271990000 0 630080000 630080000 0 + 4227 1113;1114 4329 15075;15076;15077;15078;15079;15080;15081 22776;22777;22778;22779;22780;22781;22782 22779 7 GGGGNFGPGPGSNFR SRSGRGGNFGFGDSRGGGGNFGPGPGSNFR GGGGNFGPGPGSNFRGGSDGYGSGRGFGDG R G G F R G 0 1 2 0 0 0 0 7 0 0 0 0 0 2 2 1 0 0 0 0 0 0 15 0 1376.6222 P22626;A0A024RA28 P22626 214 228 HNRNPA2B1;HNRPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2 2.618E-23 147.28 4 2 0.24286 0.33481 122.54 6 Median 0.22845 0.31232 9.2835 4 0 Median 2.0608 3.3375 2.4818 2 0 Median 320860000 196990000 123870000 201030000 156980000 44051000 119830000 40012000 79819000 4228 1290 4330 15082;15083;15084;15085;15086;15087 22783;22784;22785;22786;22787;22788;22789;22790;22791;22792 22788 10 GGGHVAQIYAIR GKERFAGVDIRVRVKGGGHVAQIYAIRQSI RVKGGGHVAQIYAIRQSISKALVAYYQKYV K G G I R Q 2 1 0 0 0 1 0 3 1 2 0 0 0 0 0 0 0 0 1 1 0 0 12 0 1240.6677 P62249;M0R210;M0R3H0;M0R1M5;M0QX76 P62249 74 85 RPS16 40S ribosomal protein S16 yes no 2;3 6.2404E-16 146.79 9 4 0.80477 1.1102 13.499 12 Median 0.74442 1.0249 10.018 8 0 Median 0.87822 1.4093 5.3747 4 0 Linear 1846800000 1015200000 831580000 1725100000 949280000 775770000 121710000 65905000 55809000 4229 1400 4331 15088;15089;15090;15091;15092;15093;15094;15095;15096;15097;15098;15099;15100 22793;22794;22795;22796;22797;22798;22799;22800;22801;22802;22803;22804;22805;22806;22807;22808;22809;22810;22811;22812 22804 19 GGGNQVSLLNVVMDLKK YKYILTRNFEALNARGGGNQVSLLNVVMDL GNQVSLLNVVMDLKKCCNHPYLFPVAAMEA R G G K K C 0 0 2 1 0 1 0 3 0 0 3 2 1 0 0 1 0 0 0 3 0 0 17 1 1770.9662 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 975 991 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 0.045013 35.098 1 0.67887 0.84288 NaN 1 Median 0.67887 0.84288 NaN 1 0 Median NaN NaN NaN 0 0 Median 5931900 3321500 2610400 5931900 3321500 2610400 0 0 0 4230 428 4332 15101 22813 22813 1 GGGPAGAGGEAPAALR LCAVSGPRQAEGGERGGGPAGAGGEAPAAL GGPAGAGGEAPAALRGRLLCDFRRAPFAGR R G G L R G 5 1 0 0 0 0 1 6 0 0 1 0 0 0 2 0 0 0 0 0 0 0 16 0 1307.6582 Q5RKV6 Q5RKV6 78 93 EXOSC6 Exosome complex component MTR3 yes yes 2 7.9808E-06 108.35 2 1 0.39021 0.55924 NaN 1 Median NaN NaN NaN 0 0 Median 0.39021 0.55924 NaN 1 0 Median 17912000 7816400 10096000 7155400 0 7155400 10757000 7816400 2940400 4231 1562 4333 15102;15103;15104 22814;22815;22816;22817 22815 4 GGGPLILLDLNDENSNQSFHSEGSLQK RSRGRERRGRGASPRGGGPLILLDLNDENS ENSNQSFHSEGSLQKGTEPSPGGTPQPSRP R G G Q K G 0 0 3 2 0 2 2 4 1 1 5 1 0 1 1 4 0 0 0 0 0 0 27 0 2868.389 I3L1Q2;Q8WUZ0 I3L1Q2 83 109 BCL7C B-cell CLL/lymphoma 7 protein family member C yes no 3 0.00010495 62.678 3 0.73604 0.93421 26.36 2 Median 0.73604 0.93421 26.36 2 0 Median NaN NaN NaN 0 0 Median 22602000 12027000 10576000 22602000 12027000 10576000 0 0 0 4232 1125 4334 15105;15106;15107 22818;22819;22820;22821;22822 22819 5 GGGQIIPTAR FDVHDVTLHADAIHRGGGQIIPTARRCLYA DAIHRGGGQIIPTARRCLYASVLTAQPRLM R G G A R R 1 1 0 0 0 1 0 3 0 2 0 0 0 0 1 0 1 0 0 0 0 0 10 0 968.54033 P13639;Q8TA90;B4DPU3;B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;K7EP67;K7EJ74 P13639 717 726 EEF2;U5-116KD;EFTUD2;SNRP116 Elongation factor 2;116 kDa U5 small nuclear ribonucleoprotein component no no 2 0.0012751 104.06 2 1 0.57717 0.79542 16.078 2 Median 0.57717 0.79542 16.078 2 0 Median NaN NaN NaN 0 0 Median 139120000 95886000 43237000 129720000 86483000 43237000 9403600 9403600 0 4233 1264;654 4335 15108;15109;15110 22823;22824;22825 22824 3 GGGQLDLLGVSLASLK MAPGVQGSLLHVPWRGGGQLDLLGVSLASL GGQLDLLGVSLASLKKQVDGERRERLLQEA R G G L K K 1 0 0 1 0 1 0 4 0 0 5 1 0 0 0 2 0 0 0 1 0 0 16 0 1526.8668 E7EXA6;Q96S08;A0A0D9SF58;Q8WVB6;B4DEY3;F8WCC1;H0Y7D3 E7EXA6 212 227 CHTF18;RUVBL Chromosome transmission fidelity protein 18 homolog yes no 2 0.007375 45.257 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1730900 1730900 0 1730900 1730900 0 0 0 0 4234 433 4336 15111 22826 22826 1 GGGQSVQFTDIETLK EIETKLIKGDIYKTRGGGQSVQFTDIETLK GGGQSVQFTDIETLKQESPNGRKRRSSTVA R G G L K Q 0 0 0 1 0 2 1 3 0 1 1 1 0 1 0 1 2 0 0 1 0 0 15 0 1578.789 H7BYN4;Q02241 H7BYN4 878 892 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 1.6917E-05 110.64 3 1 0.90177 1.2417 22.39 4 Median 0.83583 1.0445 23.494 3 0 Median 0.9729 1.4761 NaN 1 0 Median 23914000 12845000 11069000 14172000 7488600 6683400 9742200 5356500 4385800 4235 1117 4337 15112;15113;15114;15115 22827;22828;22829;22830;22831;22832;22833 22830 7 GGHMDDGGYSMNFNMSSSR GGRGGSGGTRGPPSRGGHMDDGGYSMNFNM DDGGYSMNFNMSSSRGPLPVKRGPPPRSGG R G G S R G 0 1 2 2 0 0 0 4 1 0 0 0 3 1 0 4 0 0 1 0 0 0 19 0 2048.7775 H0Y6E7;H3BT71;P38159;B4E352;Q2VIN3;Q96E39;A0A1B0GUK8 H0Y6E7 128 146 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 3 1.6359E-06 56.238 1 0.25732 0.36572 NaN 1 Median NaN NaN NaN 0 0 Median 0.25732 0.36572 NaN 1 0 Median 12553000 9825900 2727200 0 0 0 12553000 9825900 2727200 4236 1091;1531 4338 15116 22834 22834 387;388;389 1 GGINLTATCPQSELDAETVK LNSKPPNIGFKKKDKGGINLTATCPQSELD TATCPQSELDAETVKSILAEYKIHNADVTL K G G V K S 2 0 1 1 1 1 2 2 0 1 2 1 0 0 1 1 3 0 0 1 0 0 20 0 2103.0154 Q9Y295 Q9Y295 187 206 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 2 0.0002677 51.875 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1386200 1386200 0 1386200 1386200 0 0 0 0 4237 1804 4339 15117 22835 22835 1 GGIPNVEGAAK EFFTMLAQRRGMHQKGGIPNVEGAAKLLWS MHQKGGIPNVEGAAKLLWSEWTGASLAYYC K G G A K L 2 0 1 0 0 0 1 3 0 1 0 1 0 0 1 0 0 0 0 1 0 0 11 0 1011.5349 A0A024R2Z6;Q9BVP2 A0A024R2Z6 366 376 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.0038538 63.816 2 0.63972 0.81777 3.3057 2 Median 0.63972 0.81777 3.3057 2 0 Median NaN NaN NaN 0 0 Median 94057000 53650000 40407000 94057000 53650000 40407000 0 0 0 4238 95 4340 15118;15119 22836;22837;22838 22838 3 GGIQELIGLIK LIMDEVDGMAGNEDRGGIQELIGLIKHTKI NEDRGGIQELIGLIKHTKIPIICMCNDRNH R G G I K H 0 0 0 0 0 1 1 3 0 3 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1139.6914 P35251 P35251 732 742 RFC1 Replication factor C subunit 1 yes yes 2 7.8526E-06 118.03 4 0.61816 0.78439 6.5339 4 Median 0.61816 0.78439 6.5339 4 0 Median NaN NaN NaN 0 0 Median 24951000 15747000 9203300 24951000 15747000 9203300 0 0 0 4239 1318 4341 15120;15121;15122;15123 22839;22840;22841;22842;22843;22844;22845 22842 7 GGIVDEGALLR FAQCKKGVRVVNCARGGIVDEGALLRALQS NCARGGIVDEGALLRALQSGQCAGAALDVF R G G L R A 1 1 0 1 0 0 1 3 0 1 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1098.6033 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2;Q8N5M8;Q96RV5 O43175 237 247 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 2 0.00012366 89.698 2 2 1.7758 2.5726 126.68 4 Median 0.6156 0.83003 11.719 2 0 Median 4.8087 7.4233 1.6102 2 0 Median 79988000 29137000 50852000 34983000 21487000 13497000 45005000 7650000 37355000 4240 1182 4342 15124;15125;15126;15127 22846;22847;22848;22849 22849 4 GGKPEPPAMPQPVPTA PKDEILPTTPISEQKGGKPEPPAMPQPVPT GKPEPPAMPQPVPTA_______________ K G G T A - 2 0 0 0 0 1 1 2 0 0 0 1 1 0 6 0 1 0 0 1 0 0 16 1 1572.797 P23396;Q53G83;E9PL09;E9PPU1;H0YEU2;Q9NQS8 P23396 228 243 RPS3 40S ribosomal protein S3 yes no 2 2.0082E-09 130.56 6 1 0.79877 1.0141 35.386 7 Median 0.79674 1.0066 13.893 6 0 Median 1.528 2.4741 NaN 1 0 Median 123540000 58363000 65178000 56067000 31561000 24506000 67474000 26802000 40672000 4241 1293 4343;4344 15128;15129;15130;15131;15132;15133;15134 22850;22851;22852;22853;22854;22855;22856;22857;22858;22859;22860;22861;22862;22863 22854 546 13 GGKPGLTIQAPQLEVSVPSANIEGLEGK AGLRVSAPEVSVGHKGGKPGLTIQAPQLEV EVSVPSANIEGLEGKLKGPQITGPSLEGDL K G G G K L 2 0 1 0 0 2 3 5 0 2 3 2 0 0 3 2 1 0 0 2 0 0 28 1 2788.4971 Q09666;B4DTV0 Q09666 342 369 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 3 4.4913E-06 52.054 3 0.50855 0.62268 24.51 2 Median 0.50855 0.62268 24.51 2 0 Median NaN NaN NaN 0 0 Median 55332000 40925000 14407000 55332000 40925000 14407000 0 0 0 4242 1453 4345 15135;15136;15137 22864;22865;22866 22866 3 GGLGYVEETSEFEAR FLRSDLIEVATRLQKGGLGYVEETSEFEAR GGLGYVEETSEFEARVISLEKLKDFGECVI K G G A R V 1 1 0 0 0 0 4 3 0 0 1 0 0 1 0 1 1 0 1 1 0 0 15 0 1642.7475 Q9UIG0 Q9UIG0 1069 1083 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 1.2357E-18 150.46 1 2 20.859 33.966 NaN 1 Median NaN NaN NaN 0 0 Median 20.859 33.966 NaN 1 0 Median 126420000 1654200 124760000 36123000 0 36123000 90292000 1654200 88638000 4243 1786 4346 15138;15139;15140 22867;22868;22869 22869 3 GGLNTPLHESDFSGVTPQR AQNLMALTNVDTPLKGGLNTPLHESDFSGV TPLHESDFSGVTPQRQVVQTPNTVLSTPFR K G G Q R Q 0 1 1 1 0 1 1 3 1 0 2 0 0 1 2 2 2 0 0 1 0 0 19 0 2010.9759 B4DSH1;B3KY60;Q99459 B4DSH1 354 372 CDC5L Cell division cycle 5-like protein yes no 3 0.00076862 36.111 1 0.66158 0.90145 NaN 1 Median 0.66158 0.90145 NaN 1 0 Median NaN NaN NaN 0 0 Median 9381000 6370600 3010400 9381000 6370600 3010400 0 0 0 4244 792 4347 15141 22870 22870 1 GGLVGQAPMPVPEEK ARGAQGALPERDASRGGLVGQAPMPVPEEK GGLVGQAPMPVPEEKEPASSPWASGEKPPA R G G E K E 1 0 0 0 0 1 2 3 0 0 1 1 1 0 3 0 0 0 0 2 0 0 15 0 1507.7705 Q9BTC0 Q9BTC0 1598 1612 DIDO1 Death-inducer obliterator 1 yes yes 2 0.0013337 42.556 1 0.62461 0.91949 NaN 1 Median NaN NaN NaN 0 0 Median 0.62461 0.91949 NaN 1 0 Median 8201300 5508700 2692600 0 0 0 8201300 5508700 2692600 4245 1713 4348 15142 22871 22871 776 1 GGNFGFGDSR SRQEMQEVQSSRSGRGGNFGFGDSRGGGGN SRSGRGGNFGFGDSRGGGGNFGPGPGSNFR R G G S R G 0 1 1 1 0 0 0 4 0 0 0 0 0 2 0 1 0 0 0 0 0 0 10 0 1012.4363 P22626;A0A024RA28 P22626 204 213 HNRNPA2B1;HNRPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2 0.00087166 101.46 3 0.22684 0.30794 11.026 3 Median 0.22684 0.30794 11.026 3 0 Median NaN NaN NaN 0 0 Median 41779000 32659000 9120700 41779000 32659000 9120700 0 0 0 4246 1290 4349 15143;15144;15145 22872;22873;22874 22874 3 GGNRFEPYANPTK RPAQNEKRKEKNIKRGGNRFEPYANPTKRY KRGGNRFEPYANPTKRYRAFITNIPFDVKW R G G T K R 1 1 2 0 0 0 1 2 0 0 0 1 0 1 2 0 1 0 1 0 0 0 13 1 1449.7001 P52272;A0A087X0X3;M0R019;B4DEG4;M0R2T0;M0R0N3;M0QYQ7;M0R0Y6 P52272 57 69 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2;3 0.0028648 105.36 2 1 1.1733 1.7637 NaN 1 Median NaN NaN NaN 0 0 Median 1.1733 1.7637 NaN 1 0 Median 10006000 7720400 2285200 5594100 5594100 0 4411500 2126300 2285200 4247 1363 4350 15146;15147;15148 22875;22876;22877 22876 3 GGNVFAALIQDQSEEEEEEEK DEVPAPKPRGGKKTKGGNVFAALIQDQSEE ALIQDQSEEEEEEEKHPPKPAKPEKNRINK K G G E K H 2 0 1 1 0 2 7 2 0 1 1 1 0 1 0 1 0 0 0 1 0 0 21 0 2350.0448 Q8NE71;Q2L6I2;B4DNU2;Q5STZ8;F5GYK6;A0PJ72 Q8NE71 128 148 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 1.0681E-12 119.77 4 0.78123 0.98158 17.974 3 Plateau 0.78123 0.98158 17.974 3 0 Plateau NaN NaN NaN 0 0 Median 16562000 10246000 6316200 16562000 10246000 6316200 0 0 0 4248 1653 4351 15149;15150;15151;15152 22878;22879;22880;22881;22882;22883;22884;22885 22878 8 GGPEFSSALK NQLPQPDVFPLFKDKGGPEFSSALKNSHKA LFKDKGGPEFSSALKNSHKALKALLRSLVG K G G L K N 1 0 0 0 0 0 1 2 0 0 1 1 0 1 1 2 0 0 0 0 0 0 10 0 991.49746 Q9NY61 Q9NY61 267 276 AATF Protein AATF yes yes 2 0.00026356 112.41 3 1 0.84889 1.0652 3.2338 4 Median 0.86764 1.0983 2.9062 3 0 Plateau 0.67973 1.0299 NaN 1 0 Median 171630000 91215000 80411000 148280000 77994000 70283000 23350000 13221000 10129000 4249 1767 4352 15153;15154;15155;15156 22886;22887;22888;22889;22890;22891;22892 22888 7 GGPGGELPR ANLGRTTLSTRGPPRGGPGGELPRGPQAGL TRGPPRGGPGGELPRGPQAGLGPRRSQQGP R G G P R G 0 1 0 0 0 0 1 4 0 0 1 0 0 0 2 0 0 0 0 0 0 0 9 0 838.42972 E7EX73;B4DSI9;E9PGM1;E7EUU4;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637;C9JF13;C9J6B6;C9K073;C9J2Z7 E7EX73 522 530 EIF4G1;EIF4G1 variant protein Eukaryotic translation initiation factor 4 gamma 1 yes no 2 0.028405 51.346 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4250 747 4353 15157 22893 22893 1 GGPLQALTR QAGITETEWTSGSSKGGPLQALTRESTRGS TSGSSKGGPLQALTRESTRGSRRTPRKRVE K G G T R E 1 1 0 0 0 1 0 2 0 0 2 0 0 0 1 0 1 0 0 0 0 0 9 0 911.51886 A0A024RBE7;P42167 A0A024RBE7 240 248 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 2 0.0055422 71.692 1 2 0.48123 0.71225 5.2536 3 Median 0.4965 0.66397 NaN 1 0 Median 0.47442 0.72396 2.3058 2 0 Median 63282000 42121000 21161000 25444000 16656000 8788400 37838000 25465000 12372000 4251 270 4354 15158;15159;15160 22894;22895;22896;22897;22898 22896 5 GGPNIITLADIVK KKKIKREIKILENLRGGPNIITLADIVKDP LRGGPNIITLADIVKDPVSRTPALVFEHVN R G G V K D 1 0 1 1 0 0 0 2 0 3 1 1 0 0 1 0 1 0 0 1 0 0 13 0 1309.7606 E7EU96;B5BUH5;B2R6D7;Q5U5J2;P68400;Q2I0Y7;Q8NEV1 E7EU96 90 102 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 2 0.00054659 97.472 3 1 0.85804 1.0988 7.4981 3 Median 0.85804 1.0988 7.4981 3 0 Median NaN NaN NaN 0 0 Median 27832000 17009000 10823000 22109000 11287000 10823000 5722500 5722500 0 4252 697 4355 15161;15162;15163;15164 22899;22900;22901;22902;22903 22901 5 GGPPFAFVEFEDPRDAEDAVYGR YKYGAIRDIDLKNRRGGPPFAFVEFEDPRD EFEDPRDAEDAVYGRDGYDYDGYRLRVEFP R G G G R D 3 2 0 3 0 0 3 3 0 0 0 0 0 3 3 0 0 0 1 2 0 0 23 1 2540.1608 J3KTL2;Q07955;Q59FA2 J3KTL2 52 74 SRSF1 Serine/arginine-rich splicing factor 1 yes no 3 1.543E-17 88.755 4 2 0.51298 0.70231 30.163 6 Median 0.50116 0.68352 2.7715 4 0 Median 0.78017 1.232 7.9198 2 0 Median 602480000 392690000 209790000 484350000 324680000 159670000 118140000 68014000 50124000 4253 1139 4356 15165;15166;15167;15168;15169;15170 22904;22905;22906;22907;22908;22909;22910;22911;22912;22913 22909 10 GGPTVDPEELFR GFDPGASGSQHSYWKGGPTVDPEELFRKIF YWKGGPTVDPEELFRKIFGEFSSSSFGDFQ K G G F R K 0 1 0 1 0 0 2 2 0 0 1 0 0 1 2 0 1 0 0 1 0 0 12 0 1315.6408 B3KM81;Q59E88;Q53G26;Q96EY1 B3KM81 176 187 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes no 2 0.0041542 60.167 3 2 0.64637 0.88213 17.47 5 Median 0.64775 0.88213 15.525 3 0 Plateau 0.6818 0.98127 4.6106 2 0 Median 40939000 24549000 16390000 25091000 15610000 9480900 15848000 8939100 6908800 4254 753 4357 15171;15172;15173;15174;15175 22914;22915;22916;22917;22918;22919;22920;22921 22918 8 GGQLLVSLK VSAGGRYVKVWDMLKGGQLLVSLKNHHKTV VWDMLKGGQLLVSLKNHHKTVTCLCLSSSG K G G L K N 0 0 0 0 0 1 0 2 0 0 3 1 0 0 0 1 0 0 0 1 0 0 9 0 913.55967 Q8TED0;H0Y8P4 Q8TED0 237 245 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 0.0033026 104.44 2 0.73146 0.93062 1.7335 2 Median 0.73146 0.93062 1.7335 2 0 Median NaN NaN NaN 0 0 Median 33233000 18497000 14736000 33233000 18497000 14736000 0 0 0 4255 1660 4358 15176;15177 22922;22923;22924;22925 22925 4 GGQLQEQLTQQLSQALSSAVAGR EQRRLERALAEGQQRGGQLQEQLTQQLSQA TQQLSQALSSAVAGRLERSIRDEIKKTVPP R G G G R L 3 1 0 0 0 6 1 3 0 0 4 0 0 0 0 3 1 0 0 1 0 0 23 0 2369.2299 Q6P2E9 Q6P2E9 1016 1038 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 2 1.422E-08 113.47 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 880200 880200 0 880200 880200 0 0 0 0 4256 1591 4359 15178 22926;22927 22927 2 GGQTHLGLPVFNTVK LEYGTKLVGGTTPGKGGQTHLGLPVFNTVK GGQTHLGLPVFNTVKEAKEQTGATASVIYV K G G V K E 0 0 1 0 0 1 0 3 1 0 2 1 0 1 1 0 2 0 0 2 0 0 15 0 1566.8518 Q6IAL5;B2R8A1;A8K4W7;P53597;B7Z438 Q6IAL5 78 92 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes no 3 0.034235 19.39 1 0.3387 0.43038 NaN 1 Median 0.3387 0.43038 NaN 1 0 Median NaN NaN NaN 0 0 Median 12435000 9707400 2727900 12435000 9707400 2727900 0 0 0 4257 610 4360 15179 22928 22928 1 GGSDDSSKDPIDVNYEK LDNLLDIEVAYSLLRGGSDDSSKDPIDVNY SDDSSKDPIDVNYEKLKTDIKVVDRDSEEA R G G E K L 0 0 1 4 0 0 1 2 0 1 0 2 0 0 1 3 0 0 1 1 0 0 17 1 1824.8014 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 780 796 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2;3 3.7592E-148 297.03 7 4 1.0895 1.3137 38.925 11 Median 1.115 1.3583 6.0434 7 0 Median 0.39529 0.64811 2.9728 4 0 Linear 895100000 458410000 436690000 741770000 348360000 393410000 153330000 110050000 43280000 4258 107 4361 15180;15181;15182;15183;15184;15185;15186;15187;15188;15189;15190 22929;22930;22931;22932;22933;22934;22935;22936;22937;22938;22939;22940;22941;22942;22943;22944;22945;22946;22947;22948 22936 20 GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK GGGSGGGYGGGSGSRGGSGGSHGGGSGFGG EASGSGGGYGGGSGKSSHS___________ R G G G K S 1 0 0 0 0 0 3 23 1 0 0 1 0 1 0 8 0 0 2 0 0 0 40 0 3222.2743 CON__P35527;P35527;K7EQQ3 CON__P35527 580 619 KRT9 Keratin, type I cytoskeletal 9 yes no 3 7.675E-32 122.6 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 624480000 624480000 0 197630000 197630000 0 426850000 426850000 0 + 4259 963 4362 15191;15192;15193;15194;15195 22949;22950;22951;22952;22953;22954 22950 6 GGSISVQVNSIK SFRHEKTKKKRGSYRGGSISVQVNSIKFDS SYRGGSISVQVNSIKFDSE___________ R G G I K F 0 0 1 0 0 1 0 2 0 2 0 1 0 0 0 3 0 0 0 2 0 0 12 0 1187.651 B2RAU8;A0A0A0MRM9;Q14978;Q96J17 B2RAU8 684 695 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 2 0.0095699 43.168 2 0.69697 0.99179 2.187 2 Median NaN NaN NaN 0 0 Median 0.69697 0.99179 2.187 2 0 Median 11130000 6336200 4793900 0 0 0 11130000 6336200 4793900 4260 388 4363 15196;15197 22955;22956;22957 22955 3 GGSPAVTLLISEK INDIKDTDVIMKRKRGGSPAVTLLISEKIS KRGGSPAVTLLISEKISVDITLALESKSSW R G G E K I 1 0 0 0 0 0 1 2 0 1 2 1 0 0 1 2 1 0 0 1 0 0 13 0 1270.7133 Q8N884 Q8N884 303 315 MB21D1 Cyclic GMP-AMP synthase yes yes 2 1.8123E-08 123.62 3 1 1.0779 1.3667 3.3694 4 Median 1.0789 1.3581 4.1122 3 0 Median 0.85543 1.3754 NaN 1 0 Median 119720000 53827000 65890000 86272000 37519000 48752000 33445000 16308000 17138000 4261 1643 4364 15198;15199;15200;15201 22958;22959;22960;22961;22962 22961 5 GGSTTGSQFLEQFK VSMLGKGFGDVGEAKGGSTTGSQFLEQFKT KGGSTTGSQFLEQFKTAQALAQLAAQHSQS K G G F K T 0 0 0 0 0 2 1 3 0 0 1 1 0 2 0 2 2 0 0 0 0 0 14 0 1485.71 B4DZJ6;B4DYY5;F8W726;Q14157 B4DZJ6 268 281 UBAP2L Ubiquitin-associated protein 2-like yes no 2 0.0056518 77.593 1 0.42361 0.55765 NaN 1 Median 0.42361 0.55765 NaN 1 0 Median NaN NaN NaN 0 0 Median 2430100 1778200 651940 2430100 1778200 651940 0 0 0 4262 874 4365 15202 22963 22963 1 GGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVR PLKIKLGLLGGKRKKGGSYVFQSDEGPEPE GSVHSASGRPDGPVRTKKLKRGRPGRKKKK K G G V R T 2 2 0 4 0 1 5 6 1 0 1 0 0 1 4 7 0 0 1 3 0 0 38 1 3902.7103 Q12873;I3L1I4 Q12873 306 343 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 4 0.03802 8.137 1 1 0.72038 0.97142 24.592 2 Median 0.87756 1.1559 NaN 1 0 Median 0.59135 0.81637 NaN 1 0 Median 11965000 6828900 5135900 4408000 2319200 2088800 7556800 4509600 3047200 4263 1458 4366 15203;15204 22964;22965 22964 2 GGTLFGGEVCK INLASKNKLASTPFKGGTLFGGEVCKVIKK TPFKGGTLFGGEVCKVIKKRGNKH______ K G G C K V 0 0 0 0 1 0 1 4 0 0 1 1 0 1 0 0 1 0 0 1 0 0 11 0 1123.5332 P42166 P42166 675 685 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2 0.023871 47.187 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4334400 4334400 0 4334400 4334400 0 0 0 0 4264 1335 4367 15205 22966 22966 1 GGTLQIQLAK DLKKCMSVLNKTKWKGGTLQIQLAKESFLH KTKWKGGTLQIQLAKESFLHRLAQEREAAK K G G A K E 1 0 0 0 0 2 0 2 0 1 2 1 0 0 0 0 1 0 0 0 0 0 10 0 1027.6026 F5H101;A0A024R250;Q76FK4;F8WE42;B4DM91;Q6AI50;A6H8Z4;F5GWN9;A0A0A0MSJ1;F5H8B8;F5H532;F5H0I5;F5H797;F5H692;F5H7D5;Q7Z607 F5H101 79 88 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 2 0.0014109 94.302 3 1 0.95456 1.2315 2.7963 2 Median 0.95456 1.2315 2.7963 2 0 Median NaN NaN NaN 0 0 Median 11649000 3996600 7652300 11649000 3996600 7652300 0 0 0 4265 80 4368 15206;15207;15208;15209 22967;22968;22969;22970;22971 22970 5 GGTVADLDEQDEETVTAGGK KNVNLKKDSENTPVKGGTVADLDEQDEETV DLDEQDEETVTAGGKEDEDPAKGDQSRSVD K G G G K E 2 0 0 3 0 1 3 4 0 0 1 1 0 0 0 0 3 0 0 2 0 0 20 0 1990.8967 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q05BW5 Q58EY4 402 421 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 2 5.035E-18 103.13 2 1.2599 1.7399 7.2651 2 Median NaN NaN NaN 0 0 Median 1.2599 1.7399 7.2651 2 0 Median 9534800 4137400 5397500 0 0 0 9534800 4137400 5397500 4266 1549 4369 15210;15211 22972;22973;22974 22973 3 GGTVADLDEQDEETVTAGGKEDEDPAK KNVNLKKDSENTPVKGGTVADLDEQDEETV ETVTAGGKEDEDPAKGDQSRSVDLGEDNVT K G G A K G 3 0 0 5 0 1 5 4 0 0 1 2 0 0 1 0 3 0 0 2 0 0 27 1 2775.2206 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q05BW5 Q58EY4 402 428 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 3 4.1898E-47 154.42 4 2 0.82978 1.0261 38.618 6 Median 0.7364 0.91159 14.971 4 0 Median 1.1747 1.8859 3.8796 2 0 Median 94851000 47055000 47796000 36794000 21406000 15388000 58057000 25650000 32407000 4267 1549 4370 15212;15213;15214;15215;15216;15217 22975;22976;22977;22978;22979;22980;22981;22982;22983;22984;22985;22986;22987;22988;22989 22987 15 GGTVADLDEQDEETVTAGGKEDEDPAKGDQSR KNVNLKKDSENTPVKGGTVADLDEQDEETV GGKEDEDPAKGDQSRSVDLGEDNVTEQTNH K G G S R S 3 1 0 6 0 2 5 5 0 0 1 2 0 0 1 1 3 0 0 2 0 0 32 2 3318.4608 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q05BW5 Q58EY4 402 433 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 4 1.2537E-38 107.45 4 2 0.7829 0.9581 47.519 6 Median 0.62574 0.75192 25.373 4 0 Median 1.1126 1.9216 0.4146 2 0 Median 48603000 26541000 22062000 30258000 17005000 13253000 18345000 9535800 8809400 4268 1549 4371 15218;15219;15220;15221;15222;15223 22990;22991;22992;22993;22994;22995;22996;22997;22998;22999;23000;23001;23002;23003 23003 14 GGVADALLYR QKLFQEDDEIPLYLKGGVADALLYRATMIL PLYLKGGVADALLYRATMILTVGGTAYAIY K G G Y R A 2 1 0 1 0 0 0 2 0 0 2 0 0 0 0 0 0 0 1 1 0 0 10 0 1033.5556 Q496I0;D6RIE3;D6RGV5;H0UI06;P14406;D6R9C3 Q496I0 47 56 COX7A2 Cytochrome c oxidase subunit 7A2, mitochondrial yes no 2 0.002162 72.485 3 2 0.68218 0.92697 2.1843 4 Median 0.70044 0.94017 2.2853 2 0 Median 0.63626 0.91739 1.7545 2 0 Median 43613000 20525000 23088000 30496000 12871000 17625000 13117000 7654400 5462500 4269 995 4372 15224;15225;15226;15227;15228 23004;23005;23006;23007;23008;23009;23010;23011 23006 8 GGVQVPAVDISSSLGGR SGVNVNAKGLDLGGRGGVQVPAVDISSSLG VQVPAVDISSSLGGRAVEVQGPSLESGDHG R G G G R A 1 1 0 1 0 1 0 4 0 1 1 0 0 0 1 3 0 0 0 3 0 0 17 0 1597.8424 Q09666;B4DTV0 Q09666 271 287 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 1.6813E-08 113.99 4 2 0.37973 0.51013 106.88 5 Median 0.37558 0.50912 11.416 4 0 Median 3.9295 5.451 NaN 1 0 Median 60462000 29724000 30738000 42410000 27409000 15000000 18052000 2314700 15738000 4270 1453 4373 15229;15230;15231;15232;15233;15234 23012;23013;23014;23015;23016;23017;23018 23012 7 GGVSAVAGGVTAVGSAVVNK TAVTTVPSMGIGLVKGGVSAVAGGVTAVGS VAGGVTAVGSAVVNKVPLTGKKKDKSD___ K G G N K V 4 0 1 0 0 0 0 5 0 0 0 1 0 0 0 2 1 0 0 6 0 0 20 0 1698.9264 Q8WUH6 Q8WUH6 85 104 TMEM263 Transmembrane protein 263 yes yes 2 0.0015097 45.79 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2182800 2182800 0 2182800 2182800 0 0 0 0 4271 1665 4374 15235 23019 23019 1 GGVTTQALAK AGQAGLPCDYTANSKGGVTTQALAKYLKAL TANSKGGVTTQALAKYLKALDTRMAAESRR K G G A K Y 2 0 0 0 0 1 0 2 0 0 1 1 0 0 0 0 2 0 0 1 0 0 10 0 944.5291 P07199 P07199 267 276 CENPB Major centromere autoantigen B yes yes 1 0.010937 106.68 1 1.2417 1.5374 NaN 1 Median 1.2417 1.5374 NaN 1 0 Median NaN NaN NaN 0 0 Median 1271500 646380 625120 1271500 646380 625120 0 0 0 4272 1239 4375 15236 23020 23020 1 GHAGSVDSIAVDGSGTK WNVERNKVKALHCCRGHAGSVDSIAVDGSG AGSVDSIAVDGSGTKFCSGSWDKMLKIWST R G H T K F 2 0 0 2 0 0 0 4 1 1 0 1 0 0 0 3 1 0 0 2 0 0 17 0 1556.7431 Q53T99;Q9GZL7 Q53T99 187 203 WDR12 Ribosome biogenesis protein WDR12 yes no 2;3 4.2982E-34 214.61 8 3 0.86779 1.1035 14.381 11 Median 0.86899 1.0716 8.2628 8 0 Median 1.0271 1.5376 21.305 3 0 Plateau 219140000 114030000 105110000 198850000 104060000 94791000 20286000 9965000 10321000 4273 1543 4376 15237;15238;15239;15240;15241;15242;15243;15244;15245;15246;15247 23021;23022;23023;23024;23025;23026;23027;23028;23029;23030;23031;23032;23033;23034;23035;23036;23037;23038;23039;23040 23021 20 GHALLILRPEELGFLR YIHRVGRTARGLNGRGHALLILRPEELGFL HALLILRPEELGFLRYLKQSKVPLSEFDFS R G H L R Y 1 2 0 0 0 0 2 2 1 1 5 0 0 1 1 0 0 0 0 0 0 0 16 1 1833.0625 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254;Q59FR7;H7C452 Q4ZG72 400 415 DDX18 ATP-dependent RNA helicase DDX18 yes no 3;4 6.8365E-08 123.95 7 4 0.89552 1.2361 14.71 9 Median 0.95863 1.2898 3.9489 5 0 Median 0.66614 1.0827 14.055 4 0 Median 841920000 500240000 341680000 139650000 76584000 63064000 702270000 423660000 278610000 4274 242 4377 15248;15249;15250;15251;15252;15253;15254;15255;15256;15257;15258 23041;23042;23043;23044;23045;23046;23047;23048;23049;23050;23051;23052;23053;23054;23055;23056;23057;23058;23059;23060;23061;23062;23063;23064 23045 24 GHAVGDIPGVR IEENDEVLVAGFGRKGHAVGDIPGVRFKVV FGRKGHAVGDIPGVRFKVVKVANVSLLALY K G H V R F 1 1 0 1 0 0 0 3 1 1 0 0 0 0 1 0 0 0 0 2 0 0 11 0 1076.5727 A8K517;P62266;D6RD47 A8K517 109 119 RPS23 40S ribosomal protein S23 yes no 2;3 2.3695E-08 128.36 9 2 0.9147 1.263 7.1534 9 Median 0.9339 1.2922 5.9602 7 0 Median 0.67563 1.1224 3.3581 2 0 Median 8105000000 4360100000 3744900000 7420400000 3951300000 3469200000 684530000 408800000 275730000 4275 611 4378 15259;15260;15261;15262;15263;15264;15265;15266;15267;15268;15269 23065;23066;23067;23068;23069;23070;23071;23072;23073;23074;23075;23076;23077;23078;23079;23080;23081;23082;23083;23084 23080 20 GHAVGDIPGVRFK IEENDEVLVAGFGRKGHAVGDIPGVRFKVV RKGHAVGDIPGVRFKVVKVANVSLLALYKG K G H F K V 1 1 0 1 0 0 0 3 1 1 0 1 0 1 1 0 0 0 0 2 0 0 13 1 1351.7361 A8K517;P62266;D6RD47 A8K517 109 121 RPS23 40S ribosomal protein S23 yes no 3 0.0060465 27.664 1 0.79317 1.0078 NaN 1 Median 0.79317 1.0078 NaN 1 0 Median NaN NaN NaN 0 0 Median 4114100 2298300 1815800 4114100 2298300 1815800 0 0 0 4276 611 4379 15270 23085 23085 1 GHCHAPDEQGLEAR RGRAITRGLRATVMRGHCHAPDEQGLEARR RGHCHAPDEQGLEARRQREKLPSLALPEGL R G H A R R 2 1 0 1 1 1 2 2 2 0 1 0 0 0 1 0 0 0 0 0 0 0 14 0 1575.6848 Q4VC44 Q4VC44 171 184 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes yes 2;3 1.4985E-14 153.49 5 0.89473 1.2032 26.526 3 Median 0.89473 1.2032 26.526 3 0 Median NaN NaN NaN 0 0 Median 34567000 24029000 10538000 34567000 24029000 10538000 0 0 0 4277 1536 4380 15271;15272;15273;15274;15275 23086;23087;23088;23089;23090;23091 23087 6 GHCHPPDLGGLEALR RSRAITQGRRVTVMRGHCHPPDLGGLEALR GHCHPPDLGGLEALRQREKRPNTAQRGSPG R G H L R Q 1 1 0 1 1 0 1 3 2 0 3 0 0 0 2 0 0 0 0 0 0 0 15 0 1627.7889 Q4VC44;I3L188;J3KNW1;B3KRZ0;I3L4V9 Q4VC44 476 490 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 3 5.6259E-05 93.237 3 0.53982 0.72527 1.195 2 Median 0.53982 0.72527 1.195 2 0 Median NaN NaN NaN 0 0 Median 19236000 10658000 8577400 19236000 10658000 8577400 0 0 0 4278 1536 4381 15276;15277;15278 23092;23093;23094;23095;23096;23097 23096 6 GHFEAFGTLTDCVVVVNPQTK FIGGLNVQTSESGLRGHFEAFGTLTDCVVV GTLTDCVVVVNPQTKRSRCFGFVTYSNVEE R G H T K R 1 0 1 1 1 1 1 2 1 0 1 1 0 2 1 0 3 0 0 4 0 0 21 0 2318.1365 Q13151 Q13151 25 45 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 3 1.1249E-06 98.292 2 0.40072 0.50071 12.616 2 Median 0.40072 0.50071 12.616 2 0 Median NaN NaN NaN 0 0 Median 32327000 24188000 8139600 32327000 24188000 8139600 0 0 0 4279 1464 4382 15279;15280 23098;23099;23100 23098 3 GHFGPIHCVR YKYDYNSGEELESYKGHFGPIHCVRFSPDG LESYKGHFGPIHCVRFSPDGELYASGSEDG K G H V R F 0 1 0 0 1 0 0 2 2 1 0 0 0 1 1 0 0 0 0 1 0 0 10 0 1178.5767 Q9Y3F4;B0AZV0;H0YH33 Q9Y3F4 263 272 STRAP Serine-threonine kinase receptor-associated protein yes no 3 0.00044731 124.08 2 0.38706 0.51279 NaN 1 Median 0.38706 0.51279 NaN 1 0 Median NaN NaN NaN 0 0 Median 12293000 8026700 4266400 12293000 8026700 4266400 0 0 0 4280 1818 4383 15281;15282 23101;23102 23102 2 GHFGPINSVAFHPDGK RFFHLAFEEEFGRVKGHFGPINSVAFHPDG HFGPINSVAFHPDGKSYSSGGEDGYVRIHY K G H G K S 1 0 1 1 0 0 0 3 2 1 0 1 0 2 2 1 0 0 0 1 0 0 16 0 1678.8216 Q9P1D9;Q5U0F4;Q53HU7;Q13347 Q9P1D9 31 46 EIF3I Eukaryotic translation initiation factor 3 subunit I yes no 3 0.0010016 51.727 2 0.36906 0.46864 NaN 1 Median 0.36906 0.46864 NaN 1 0 Median NaN NaN NaN 0 0 Median 13759000 12119000 1640300 13759000 12119000 1640300 0 0 0 4281 1468 4384 15283;15284 23103;23104 23104 2 GHFNIQPNKK VEFRGPSGLLTYTGKGHFNIQPNKKSPPEP TYTGKGHFNIQPNKKSPPEPRVAKKLGMIA K G H K K S 0 0 2 0 0 1 0 1 1 1 0 2 0 1 1 0 0 0 0 0 0 0 10 1 1181.6305 H7C0R7;Q9UHQ9 H7C0R7 91 100 CYB5R1 NADH-cytochrome b5 reductase 1 yes no 2 0.04286 69.628 1 0.39546 0.47289 NaN 1 Median 0.39546 0.47289 NaN 1 0 Median NaN NaN NaN 0 0 Median 724380 531080 193300 724380 531080 193300 0 0 0 4282 1122 4385 15285 23105 23105 1 GHFYGHLDFNLDK NLHAQSKARIQEFVRGHFYGHLDFNLDKTL VRGHFYGHLDFNLDKTLYFFIAGRYEFSNK R G H D K T 0 0 1 2 0 0 0 2 2 0 2 1 0 2 0 0 0 0 1 0 0 0 13 0 1561.7314 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6 P13807 310 322 GYS1 Glycogen [starch] synthase, muscle yes no 3 5.7458E-05 84.892 2 0.78201 0.98384 5.3748 2 Median 0.78201 0.98384 5.3748 2 0 Median NaN NaN NaN 0 0 Median 50705000 28633000 22071000 50705000 28633000 22071000 0 0 0 4283 1265 4386 15286;15287 23106;23107;23108;23109 23108 4 GHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYK GPVYKGVCKCFCRSKGHGFITPADGGPDIF EGEYVPVEGDEVTYKMCSIPPKNEKLQAVE K G H Y K M 1 0 0 4 0 0 4 6 2 3 1 1 0 2 3 1 2 0 2 4 0 0 36 0 3858.8265 Q9Y2V2;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 75 110 CARHSP1 Calcium-regulated heat stable protein 1 yes no 4 4.2485E-07 61.504 2 0.26051 0.32755 NaN 1 Median 0.26051 0.32755 NaN 1 0 Median NaN NaN NaN 0 0 Median 8382700 6710600 1672100 8382700 6710600 1672100 0 0 0 4284 1808 4387 15288;15289 23110;23111;23112 23112 3 GHLDAELDAYMAQTDPETND EQLDNQLDAYMSKTKGHLDAELDAYMAQTD ELDAYMAQTDPETND_______________ K G H N D - 3 0 1 4 0 1 2 1 1 0 2 0 1 0 1 0 2 0 1 0 0 0 20 0 2204.9168 X6R700;Q9Y3Y2 X6R700 204 223 CHTOP Chromatin target of PRMT1 protein yes no 2 6.3966E-12 137.81 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21806000 0 0 1072300 0 0 20733000 0 0 4285 1822 4388 15290;15291;15292;15293 23113;23114;23115;23116 23113 849 4 GHLENNPALEK VVLMGRNTMMRKAIRGHLENNPALEKLLPH KAIRGHLENNPALEKLLPHIRGNVGFVFTK R G H E K L 1 0 2 0 0 0 2 1 1 0 2 1 0 0 1 0 0 0 0 0 0 0 11 0 1220.6149 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VWS0;Q53HK9;F8VW21;F8VU65;F8VZS0;Q6NSF2;G3V210;Q8NHW5;F8VQY6;F8VPE8;F8VRK7;F8VS58;F8VWV4 Q53HW2 67 77 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 4.5011E-58 223.14 4 2 0.78192 1.0501 4.2103 6 Median 0.79817 1.0254 2.8078 4 0 Median 0.68759 1.0864 4.6077 2 0 Median 597640000 343300000 254340000 298160000 169670000 128490000 299480000 173630000 125850000 4286 281 4389 15294;15295;15296;15297;15298;15299 23117;23118;23119;23120;23121;23122;23123;23124;23125;23126;23127;23128 23124 12 GHLLGR ______________________________ VQVLVLDGRGHLLGRLAAIVAKQVLLGRKV R G H G R L 0 1 0 0 0 0 0 2 1 0 2 0 0 0 0 0 0 0 0 0 0 0 6 0 651.38164 Q53H34;P40429;Q5QTS3;M0QYS1;B4DNC8;M0QZU1;A0A096LPE0;Q9BSQ6 Q53H34 13 18 RPL13A 60S ribosomal protein L13a no no 2 0.034713 85.446 1 0.63585 0.84693 NaN 1 Median 0.63585 0.84693 NaN 1 0 Median NaN NaN NaN 0 0 Median 29787000 18140000 11647000 29787000 18140000 11647000 0 0 0 4287 1332;1712 4390 15300 23129 23129 1 GHLSRPEAQSLSPYTTSANR QLEGATRGTTEPHSRGHLSRPEAQSLSPYT PEAQSLSPYTTSANRAKLLAKNRQTFLLQT R G H N R A 2 2 1 0 0 1 1 1 1 0 2 0 0 0 2 4 2 0 1 0 0 0 20 1 2171.0719 A0A024R534;O94776 A0A024R534 424 443 MTA2 Metastasis-associated protein MTA2 yes no 3;4 3.1894E-12 125.23 3 1 0.74245 0.99179 15.476 3 Median 0.6989 0.95032 6.0407 2 0 Median 0.92548 1.2296 NaN 1 0 Median 36518000 16963000 19556000 33090000 15281000 17809000 3428000 1681500 1746500 4288 133 4391 15301;15302;15303;15304 23130;23131;23132;23133;23134 23131 5 GHNTNVGAIVFHPK KLWSVPDCNLLHTLRGHNTNVGAIVFHPKS RGHNTNVGAIVFHPKSTVSLDPKDVNLASC R G H P K S 1 0 2 0 0 0 0 2 2 1 0 1 0 1 1 0 1 0 0 2 0 0 14 0 1489.779 Q6IAP9;Q5T1M7;B2R7V4;Q59EL4;O43172 Q6IAP9 270 283 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes no 3 0.0024486 39.005 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7706800 7706800 0 7706800 7706800 0 0 0 0 4289 708 4392 15305 23135 23135 1 GHQLLSADVDIK KGRLQILHIHTARMRGHQLLSADVDIKELA RMRGHQLLSADVDIKELAVETKNFSGAELE R G H I K E 1 0 0 2 0 1 0 1 1 1 2 1 0 0 0 1 0 0 0 1 0 0 12 0 1294.6881 B4DGR3;I3L0N3;B7Z5J7;P46459;B7Z9U2;B4DH19;B4DSK5 B4DGR3 374 385 NSF Vesicle-fusing ATPase yes no 2 0.00048019 87.667 2 0.3551 0.45933 NaN 1 Median 0.3551 0.45933 NaN 1 0 Median NaN NaN NaN 0 0 Median 6893100 5203600 1689500 6893100 5203600 1689500 0 0 0 4290 805 4393 15306;15307 23136;23137 23137 2 GHQLSITCLVVTPDDSAIFSAAK KEIQAPASADIRVLRGHQLSITCLVVTPDD LVVTPDDSAIFSAAKDCSIIKWSVESGRKL R G H A K D 3 0 0 2 1 1 0 1 1 2 2 1 0 1 1 3 2 0 0 2 0 0 23 0 2429.2261 O43818 O43818 144 166 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 3 3.4544E-20 134.8 4 2 0.89083 1.136 33.278 6 Median 0.90319 1.1583 3.8487 4 0 Median 0.41141 0.63488 23.113 2 0 Median 352590000 198880000 153700000 302760000 161630000 141130000 49829000 37254000 12576000 4291 1188 4394 15308;15309;15310;15311;15312;15313 23138;23139;23140;23141;23142;23143;23144;23145;23146 23140 9 GHRIEEVPELPLVVEDK SALAASALPALVMSKGHRIEEVPELPLVVE RIEEVPELPLVVEDKVEGYKKTKEAVLLLK K G H D K V 0 1 0 1 0 0 4 1 1 1 2 1 0 0 2 0 0 0 0 3 0 0 17 1 1958.0473 P36578;Q59GY2;B4DFI6;H3BM89;Q53G74;B4DMJ2 P36578 141 157 RPL4 60S ribosomal protein L4 yes no 3;4 1.0446E-07 99.044 6 2 0.69784 0.94881 6.5746 8 Median 0.71321 0.94396 6.3552 6 0 Median 0.57218 0.98625 5.4877 2 0 Median 886110000 505720000 380390000 783640000 440200000 343440000 102470000 65521000 36953000 4292 1325 4395 15314;15315;15316;15317;15318;15319;15320;15321 23147;23148;23149;23150;23151;23152;23153;23154;23155;23156;23157;23158;23159;23160;23161;23162;23163;23164;23165;23166;23167;23168 23163 21 GHRIEEVPELPLVVEDKVEGYK SALAASALPALVMSKGHRIEEVPELPLVVE PELPLVVEDKVEGYKKTKEAVLLLKKLKAW K G H Y K K 0 1 0 1 0 0 5 2 1 1 2 2 0 0 2 0 0 0 1 4 0 0 22 2 2534.3381 P36578;Q59GY2;B4DFI6;H3BM89;Q53G74;B4DMJ2 P36578 141 162 RPL4 60S ribosomal protein L4 yes no 4 0.00014359 63.869 1 0.67958 0.85739 NaN 1 Median 0.67958 0.85739 NaN 1 0 Median NaN NaN NaN 0 0 Median 11016000 5958700 5057500 11016000 5958700 5057500 0 0 0 4293 1325 4396 15322 23169;23170 23169 2 GHSLSDGLEEVQK VVSELGPIVQFVKAKGHSLSDGLEEVQKAE AKGHSLSDGLEEVQKAEMKAYMELVNNMLL K G H Q K A 0 0 0 1 0 1 2 2 1 0 2 1 0 0 0 2 0 0 0 1 0 0 13 0 1397.6787 C9JNK6;C9JAZ1;B7Z9F3;O75431;B3KM74 C9JNK6 40 52 MTX2 Metaxin-2 yes no 2 3.7417E-12 154.15 5 0.54058 0.67597 13.442 3 Median 0.54058 0.67597 13.442 3 0 Median NaN NaN NaN 0 0 Median 22996000 15041000 7954600 22996000 15041000 7954600 0 0 0 4294 920 4397 15323;15324;15325;15326;15327 23171;23172;23173;23174;23175;23176;23177;23178 23173 8 GHSNYVFCCNFNPQSNLIVSGSFDESVR KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS QSNLIVSGSFDESVRIWDVKTGKCLKTLPA K G H V R I 0 1 4 1 2 1 1 2 1 1 1 0 0 3 1 5 0 0 1 3 0 0 28 0 3233.4295 P61964 P61964 127 154 WDR5 WD repeat-containing protein 5 yes yes 3 8.1716E-12 90.757 4 0.76979 1.0227 13.188 4 Median 0.76979 1.0227 13.188 4 0 Median NaN NaN NaN 0 0 Median 42819000 23404000 19416000 42819000 23404000 19416000 0 0 0 4295 1394 4398 15328;15329;15330;15331 23179;23180;23181;23182;23183;23184;23185;23186;23187 23181 9 GHSVLPLEEAVEGFK QMPICVVCDRSREHRGHSVLPLEEAVEGFK GHSVLPLEEAVEGFKEQIQNQLDHLKRVKD R G H F K E 1 0 0 0 0 0 3 2 1 0 2 1 0 1 1 1 0 0 0 2 0 0 15 0 1610.8304 P14373;Q59EC6;A0A0G2JIZ4 P14373 126 140 TRIM27 Zinc finger protein RFP yes no 3 0.0019526 100.18 2 0.72207 0.92303 NaN 1 Median 0.72207 0.92303 NaN 1 0 Median NaN NaN NaN 0 0 Median 5253100 3357000 1896100 5253100 3357000 1896100 0 0 0 4296 1266 4399 15332;15333 23188;23189 23188 2 GHTSFVNSCYPAR AVWDSETGERVKRLKGHTSFVNSCYPARRG LKGHTSFVNSCYPARRGPQLVCTGSDDGTV K G H A R R 1 1 1 0 1 0 0 1 1 0 0 0 0 1 1 2 1 0 1 1 0 0 13 0 1494.6674 B2R9I9;A0MNP2;Q96DI7 B2R9I9 149 161 WDR57;SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 2 5.8986E-07 171.33 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3548800 3548800 0 3548800 3548800 0 0 0 0 4297 530 4400 15334;15335;15336 23190;23191;23192 23190 3 GHVAALDWVTK NYSRTGRHLAFGGRRGHVAALDWVTKKLMC GGRRGHVAALDWVTKKLMCEINVMEAVRDI R G H T K K 2 0 0 1 0 0 0 1 1 0 1 1 0 0 0 0 1 1 0 2 0 0 11 0 1195.635 B0UZZ8;B4DNI0;O15213;B4DP15;A8K9A1;A8K806;A0A140T9L0;A0A0G2JJL1;H0Y6G3 B0UZZ8 217 227 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2 0.00039612 80.986 1 0.67052 0.99427 NaN 1 Median NaN NaN NaN 0 0 Median 0.67052 0.99427 NaN 1 0 Median 7387500 4546700 2840900 0 0 0 7387500 4546700 2840900 4298 668 4401 15337 23193 23193 1 GHVDILAPTVQELAALEK VTYGQKRAAGGGSYKGHVDILAPTVQELAA DILAPTVQELAALEKEAQTSFLHLGYLPNQ K G H E K E 3 0 0 1 0 1 2 1 1 1 3 1 0 0 1 0 1 0 0 2 0 0 18 0 1903.0415 F1T0B3;A0A087X2G1;A3RJH1;Q92499 F1T0B3 622 639 DDX1 ATP-dependent RNA helicase DDX1 yes no 2;3 8.9243E-10 129.36 8 0.76963 0.97559 17.864 4 Median 0.76963 0.97559 17.864 4 0 Median NaN NaN NaN 0 0 Median 139500000 78040000 61458000 139500000 78040000 61458000 0 0 0 4299 378 4402 15338;15339;15340;15341;15342;15343;15344;15345 23194;23195;23196;23197;23198;23199;23200;23201;23202;23203 23195 9 GHVFEESQVAGTPMFVVK EQVVGGIYGVLNRKRGHVFEESQVAGTPMF FEESQVAGTPMFVVKAYLPVNESFGFTADL R G H V K A 1 0 0 0 0 1 2 2 1 0 0 1 1 2 1 1 1 0 0 4 0 0 18 0 1960.9717 P13639;Q8TA90;B4DPU3 P13639 768 785 EEF2 Elongation factor 2 yes no 3 0.00057408 50.131 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12983000 0 12983000 0 0 0 12983000 0 12983000 4300 1264 4403 15346;15347 23204;23205 23205 527 2 GHVHYLIK WMMIHRILNHSVDKKGHVHYLIKWRDLPYD NHSVDKKGHVHYLIKWRDLPYDQASWESED K G H I K W 0 0 0 0 0 0 0 1 2 1 1 1 0 0 0 0 0 0 1 1 0 0 8 0 965.54469 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 610 617 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2;3 0.0011713 137.5 5 0.74473 0.94773 3.3236 5 Median 0.74473 0.94773 3.3236 5 0 Median NaN NaN NaN 0 0 Median 115140000 65170000 49969000 115140000 65170000 49969000 0 0 0 4301 428 4404 15348;15349;15350;15351;15352 23206;23207;23208;23209;23210;23211;23212;23213 23206 8 GHVQPIR MTKKRRNNGRAKKGRGHVQPIRCTNCARCV NGRAKKGRGHVQPIRCTNCARCVPKDKAIK R G H I R C 0 1 0 0 0 1 0 1 1 1 0 0 0 0 1 0 0 0 0 1 0 0 7 0 805.45587 A0A024RB14;P62854;Q5JNZ5;Q75MH1 A0A024RB14 16 22 RPS26;RPS26P11 40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1 yes no 2 0.0069666 99.511 1 0.96707 1.3004 NaN 1 Median 0.96707 1.3004 NaN 1 0 Median NaN NaN NaN 0 0 Median 38643000 19377000 19266000 38643000 19377000 19266000 0 0 0 4302 255 4405 15353 23214 23214 0 GHVTQDAPIPGSPLYTIK ADCVSAVYTVLARRRGHVTQDAPIPGSPLY TQDAPIPGSPLYTIKAFIPAIDSFGFETDL R G H I K A 1 0 0 1 0 1 0 2 1 2 1 1 0 0 3 1 2 0 1 1 0 0 18 0 1892.9996 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3 B4DZB1 806 823 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 3 6.2894E-05 106.93 4 0.57363 0.70741 2.9405 3 Median 0.57363 0.70741 2.9405 3 0 Median NaN NaN NaN 0 0 Median 59868000 41046000 18822000 59868000 41046000 18822000 0 0 0 4303 654 4406 15354;15355;15356;15357 23215;23216;23217;23218;23219 23218 5 GHYTEGAELVDAVLDVVR NFVFGQSGAGNNWAKGHYTEGAELVDAVLD TEGAELVDAVLDVVRKEAESCDCLQGFQLT K G H V R K 2 1 0 2 0 0 2 2 1 0 2 0 0 0 0 0 1 0 1 4 0 0 18 0 1941.9796 P04350;B4DJ43;B4DE77;M0R278;M0R1I1;K7ES63;Q9BUF5;K7ESM5;B3KS31;K7EL29 P04350 104 121 TUBB4A;TUBB6 Tubulin beta-4A chain;Tubulin beta-6 chain no no 3 1.1343E-06 55.589 2 0.4431 0.61207 62.162 2 Median 0.4431 0.61207 62.162 2 0 Median NaN NaN NaN 0 0 Median 7763200 5666900 2096400 7763200 5666900 2096400 0 0 0 4304 1230;1716 4407 15358;15359 23220;23221;23222;23223;23224 23223 5 GHYTEGAELVDAVLDVVRK NFVFGQSGAGNNWAKGHYTEGAELVDAVLD EGAELVDAVLDVVRKEAESCDCLQGFQLTH K G H R K E 2 1 0 2 0 0 2 2 1 0 2 1 0 0 0 0 1 0 1 4 0 0 19 1 2070.0746 P04350;B4DJ43;B4DE77;M0R278;M0R1I1;K7ES63;Q9BUF5;K7ESM5;B3KS31;K7EL29 P04350 104 122 TUBB4A;TUBB6 Tubulin beta-4A chain;Tubulin beta-6 chain no no 3 1.1112E-06 62.94 3 0.35564 0.46743 13.754 2 Median 0.35564 0.46743 13.754 2 0 Median NaN NaN NaN 0 0 Median 13646000 10448000 3197700 13646000 10448000 3197700 0 0 0 4305 1230;1716 4408 15360;15361;15362 23225;23226;23227 23226 3 GHYTEGAELVDSVLDVVR NFVFGQSGAGNNWAKGHYTEGAELVDSVLD TEGAELVDSVLDVVRKEAESCDCLQGFQLT K G H V R K 1 1 0 2 0 0 2 2 1 0 2 0 0 0 0 1 1 0 1 4 0 0 18 0 1957.9745 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;Q5ST81;B7ZAK1;B4DMJ5;G3V2A3;Q8IZ29;P68371;Q8N6N5;Q8IWP6;Q9BVA1;Q13885;A0A024QZU2;B2R6L0;O43209;A5D907;A5D906;A1L195;Q2NKY5;Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q53G92;Q3ZCR3 Q5JP53 86 103 TUBB;TUBB3;TUBB2C;TUBB4B;TUBB2B;TUBB2A;TUBB6 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain no no 2;3 2.8265E-162 351.61 9 2 0.39918 0.54435 100.74 11 Median 0.39401 0.5302 8.7582 9 0 Median 3.7798 6.2565 3.9089 2 0 Median 1177800000 574530000 603230000 642750000 458660000 184090000 535010000 115870000 419140000 4306 1241;1423;1479;416;1528 4409 15363;15364;15365;15366;15367;15368;15369;15370;15371;15372;15373 23228;23229;23230;23231;23232;23233;23234;23235;23236;23237;23238;23239;23240;23241;23242;23243;23244;23245;23246;23247;23248;23249;23250;23251;23252 23236 25 GHYTEGAELVDSVLDVVRK NFVFGQSGAGNNWAKGHYTEGAELVDSVLD EGAELVDSVLDVVRKEAESCDCLQGFQLTH K G H R K E 1 1 0 2 0 0 2 2 1 0 2 1 0 0 0 1 1 0 1 4 0 0 19 1 2086.0695 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;Q5ST81;B7ZAK1;B4DMJ5;G3V2A3;Q8IZ29;P68371;Q8N6N5;Q8IWP6;Q9BVA1;Q13885;A0A024QZU2;B2R6L0;O43209;A5D907;A5D906;A1L195;Q2NKY5;Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q53G92;Q3ZCR3 Q5JP53 86 104 TUBB;TUBB3;TUBB2C;TUBB4B;TUBB2B;TUBB2A;TUBB6 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain no no 3;4 4.007E-73 229.69 6 1 0.45104 0.59342 66.69 6 Median 0.44776 0.58522 11.039 5 0 Median 1.7856 3.075 NaN 1 0 Median 1032400000 507170000 525260000 633960000 429290000 204670000 398470000 77881000 320590000 4307 1241;1423;1479;416;1528 4410 15374;15375;15376;15377;15378;15379;15380 23253;23254;23255;23256;23257;23258;23259;23260;23261;23262;23263;23264;23265;23266 23255 14 GIAFPTSISVNNCVCHFSPLK EETGKIFKKEKEMKKGIAFPTSISVNNCVC SISVNNCVCHFSPLKSDQDYILKEGDLVKI K G I L K S 1 0 2 0 2 0 0 1 1 2 1 1 0 2 2 3 1 0 0 2 0 0 21 0 2347.1453 A8K6Y1;Q6PIN5;A0A024RB85;Q9UQ80;F8VR77;H0YIN7;F8W0A3;F8VZ69 A8K6Y1 73 93 PA2G4 Proliferation-associated protein 2G4 yes no 3 0.00067004 58.29 2 0.88428 1.1089 12.8 2 Median 0.88428 1.1089 12.8 2 0 Median NaN NaN NaN 0 0 Median 19882000 11480000 8402400 19882000 11480000 8402400 0 0 0 4308 264 4411 15381;15382 23267;23268 23267 2 GIAYIEFK DAAEIRLVSKDGKSKGIAYIEFKTEADAEK SKDGKSKGIAYIEFKTEADAEKTFEEKQGT K G I F K T 1 0 0 0 0 0 1 1 0 2 0 1 0 1 0 0 0 0 1 0 0 0 8 0 939.50657 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99;Q9BQ02;H7BY16 B3KTP9 353 360 NCL Nucleolin yes no 2 0.0029651 105.39 4 2 0.9322 1.1835 12.619 5 Median 0.94202 1.1835 13.961 3 0 Median 0.73702 1.1209 7.8459 2 0 Median 179030000 106850000 72183000 136660000 82634000 54030000 42370000 24218000 18153000 4309 119 4412 15383;15384;15385;15386;15387;15388 23269;23270;23271;23272;23273;23274;23275;23276;23277;23278;23279 23276 11 GICEMELLDGK LVGATADDTEAELIRGICEMELLDGKQTLA ELIRGICEMELLDGKQTLAAFVPLLLKVCN R G I G K Q 0 0 0 1 1 0 2 2 0 1 2 1 1 0 0 0 0 0 0 0 0 0 11 0 1263.5839 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77 B3KMS0 998 1008 NCAPD2 Condensin complex subunit 1 yes no 2 0.018722 42.336 1 0.71314 0.92093 NaN 1 Median 0.71314 0.92093 NaN 1 0 Median NaN NaN NaN 0 0 Median 5925600 3849800 2075700 5925600 3849800 2075700 0 0 0 4310 757 4413 15389 23280 23280 1 GIDIHGVPYVINVTLPDEK KGDVRFLICTDVAARGIDIHGVPYVINVTL HGVPYVINVTLPDEKQNYVHRIGRVGRAER R G I E K Q 0 0 1 2 0 0 1 2 1 3 1 1 0 0 2 0 1 0 1 3 0 0 19 0 2078.1048 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 497 515 DDX1 ATP-dependent RNA helicase DDX1 yes no 3 9.3172E-24 112.01 4 1 0.76489 0.96312 58.347 5 Median 0.76733 0.96394 66.749 4 0 Median 0.55303 0.84747 NaN 1 0 Median 252880000 149600000 103280000 231690000 136070000 95621000 21182000 13528000 7654100 4311 378 4414 15390;15391;15392;15393;15394 23281;23282;23283;23284;23285;23286;23287;23288 23285 8 GIDSDDVQDNSQLK RSGRISSTPTTETIRGIDSDDVQDNSQLKA RGIDSDDVQDNSQLKASTQKAANLSEKHSL R G I L K A 0 0 1 4 0 2 0 1 0 1 1 1 0 0 0 2 0 0 0 1 0 0 14 0 1532.6954 Q96QE3;H0UIC2;A0A075B754 Q96QE3 611 624 ATAD5 ATPase family AAA domain-containing protein 5 yes no 2 1.2565E-06 126.19 3 1 1.5711 2.1209 25.688 4 Linear 1.3308 1.7234 16.759 3 0 Plateau 1.68 2.3186 NaN 1 0 Median 13677000 5591200 8086200 8745000 3940100 4804900 4932400 1651100 3281300 4312 1698 4415 15395;15396;15397;15398 23289;23290;23291;23292;23293;23294 23292 6 GIDVEQVSVVINFDLPVDK EGKEKVLVTTNVCARGIDVEQVSVVINFDL EQVSVVINFDLPVDKDGNPDNETYLHRIGR R G I D K D 0 0 1 3 0 1 1 1 0 2 1 1 0 1 1 1 0 0 0 5 0 0 19 0 2085.0994 I3L0H8;Q9HBZ9;F6QDS0;Q9NUU7;B4DS24;Q2NL95;Q7Z4W5;A0A0U4B4U6;H3BQK0;Q9UMR2;Q68DY7;Q69YM2;I3L352;Q59FQ9;B4DL69;A0A024QZ90 I3L0H8 364 382 DDX19A;DDX19B;DKFZp686C21137;DKFZp762C1313;hCG_1998531 ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 2 3.198E-13 92.65 1 0.34355 0.43562 NaN 1 Median 0.34355 0.43562 NaN 1 0 Median NaN NaN NaN 0 0 Median 6291800 4828500 1463400 6291800 4828500 1463400 0 0 0 4313 1058 4416 15399 23295 23295 1 GIDVQQVSLVINYDLPTNR SGSSRVLITTDLLARGIDVQQVSLVINYDL QQVSLVINYDLPTNRENYIHRIGRGGRFGR R G I N R E 0 1 2 2 0 2 0 1 0 2 2 0 0 0 1 1 1 0 1 3 0 0 19 0 2143.1273 A8K7F6;P60842;A8K088;B4DNH2;E7EQG2;Q14240;Q9NZE6;Q96B07 A8K7F6 335 353 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 2 1.2599E-110 260.97 4 1 0.31301 0.41974 104.37 5 Median 0.30931 0.41737 9.249 4 0 Median 2.6861 4.2874 NaN 1 0 Median 173310000 116300000 57013000 140580000 107150000 33435000 32727000 9149400 23577000 4314 634 4417 15400;15401;15402;15403;15404 23296;23297;23298;23299;23300;23301;23302;23303;23304;23305;23306 23297 11 GIDYDFPSLILQK FKKKERLLRKKLAKKGIDYDFPSLILQKTE KKGIDYDFPSLILQKTESISKTNRQTSTKG K G I Q K T 0 0 0 2 0 1 0 1 0 2 2 1 0 1 1 1 0 0 1 0 0 0 13 0 1507.7922 Q9BYG3;C9J808;C9J6C5 Q9BYG3 180 192 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2 2.794E-25 192.64 4 2 0.91763 1.236 7.3066 6 Median 0.96633 1.2253 5.6372 4 0 Median 0.8516 1.3416 0.69404 2 0 Median 259530000 137210000 122320000 194680000 101030000 93644000 64848000 36171000 28678000 4315 1726 4418 15405;15406;15407;15408;15409;15410 23307;23308;23309;23310;23311;23312;23313;23314;23315;23316;23317;23318 23309 12 GIECDIR GPHFPLSLSTCLFGRGIECDIRIQLPVVSK LSTCLFGRGIECDIRIQLPVVSKQHCKIEI R G I I R I 0 1 0 1 1 0 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 7 0 861.40145 P46013 P46013 32 38 MKI67 Antigen KI-67 yes yes 2 0.026103 62.714 1 1 1.085 1.7675 NaN 1 Median NaN NaN NaN 0 0 Median 1.085 1.7675 NaN 1 0 Median 77993000 23156000 54837000 30263000 0 30263000 47730000 23156000 24574000 4316 1342 4419 15411;15412 23319;23320 23319 2 GIEEEEILPGFILCDPNNLCHSGR TDTVAPGENLKIRLKGIEEEEILPGFILCD GFILCDPNNLCHSGRTFDAQALICLVDKKS K G I G R T 0 1 2 1 2 0 4 3 1 3 3 0 0 1 2 1 0 0 0 0 0 0 24 0 2768.2898 H3BR35;Q7KZX8;B2RCT6;A8K2W7;P15170 H3BR35 374 397 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 3 5.2643E-46 124.4 4 0.42186 0.57213 20.443 4 Median 0.42186 0.57213 20.443 4 0 Median NaN NaN NaN 0 0 Median 55130000 42103000 13027000 55130000 42103000 13027000 0 0 0 4317 586 4420 15413;15414;15415;15416 23321;23322;23323;23324;23325 23323 4 GIEILLEK KSLIPTLEKTKSTSKGIEILLEKLST____ KTKSTSKGIEILLEKLST____________ K G I E K L 0 0 0 0 0 0 2 1 0 2 2 1 0 0 0 0 0 0 0 0 0 0 8 0 913.54843 Q15397;B2RDG4;S4R3K8 Q15397 638 645 KIAA0020 Pumilio domain-containing protein KIAA0020 yes no 2 0.020355 87.323 2 0.64009 0.80102 NaN 1 Median 0.64009 0.80102 NaN 1 0 Median NaN NaN NaN 0 0 Median 11418000 8906000 2511700 11418000 8906000 2511700 0 0 0 4318 1511 4421 15417;15418 23326;23327;23328;23329 23329 4 GIEQAVQSHAVAEEEAR DNFTLDINTAYARLRGIEQAVQSHAVAEEE EQAVQSHAVAEEEARKAHQLWLSVEALKYS R G I A R K 4 1 0 0 0 2 4 1 1 1 0 0 0 0 0 1 0 0 0 2 0 0 17 0 1822.881 B4DS66;C9J406;H7C463;Q16891;B9A067;B4DQY2;B4DKR1;B4DT20 Q16891 548 564 IMMT MICOS complex subunit MIC60 no no 3 3.8691E-05 54.805 1 1.646 2.3297 NaN 1 Median NaN NaN NaN 0 0 Median 1.646 2.3297 NaN 1 0 Median 7176800 2611100 4565700 0 0 0 7176800 2611100 4565700 4319 1524;854 4422 15419 23330 23330 1 GIFEALRPLETLPVEGLIR PHYIYSPREMTRWVRGIFEALRPLETLPVE ALRPLETLPVEGLIRIWAHEALRLFQDRLV R G I I R I 1 2 0 0 0 0 3 2 0 2 4 0 0 1 2 0 1 0 0 1 0 0 19 1 2122.215 Q14204 Q14204 2805 2823 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 0.00029182 79.565 1 0.44386 0.61324 NaN 1 Median 0.44386 0.61324 NaN 1 0 Median NaN NaN NaN 0 0 Median 6579500 4053900 2525600 6579500 4053900 2525600 0 0 0 4320 1483 4423 15420 23331 23331 1 GIFEPFGR YVGSLHFNITEDMLRGIFEPFGRIESIQLM ITEDMLRGIFEPFGRIESIQLMMDSETGRS R G I G R I 0 1 0 0 0 0 1 2 0 1 0 0 0 2 1 0 0 0 0 0 0 0 8 0 921.47085 B4DRA0;B4DLM0;B3KWX7;Q68DD9;B4E1M7;Q14498;H0Y4X3;B7Z4L7;Q6N037;E1P5S2;Q7Z3L0;Q6MZY7;G3XAC6;A0A0U1RQH7;A0A0U1RQW2 B4DRA0 246 253 DKFZp781C0423;RBM39;DKFZp686A11192;RNPC2;DKFZp781I1140;DKFZp686C17209 RNA-binding protein 39 yes no 2 0.03436 52.018 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4321 786 4424 15421 23332 23332 1 GIFPVLCK VTRNPQTARQAHLYRGIFPVLCKDPVQEAW RQAHLYRGIFPVLCKDPVQEAWAEDVDLRV R G I C K D 0 0 0 0 1 0 0 1 0 1 1 1 0 1 1 0 0 0 0 1 0 0 8 0 932.51536 V9HWB8;P14618;B4DNK4;H3BTN5;A0A024R5Z9;B4DRT3;Q8WUW7;Q504U3;H3BR70 V9HWB8 468 475 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 2 0.018958 59.205 2 2 0.82547 1.0451 6.078 2 Median 0.82547 1.0451 6.078 2 0 Median NaN NaN NaN 0 0 Median 20931000 8964500 11967000 17357000 8964500 8392800 3573900 0 3573900 4322 1267 4425 15422;15423;15424;15425 23333;23334;23335;23336;23337 23333 5 GIFTSEIGTK LAKLYRSIGEYDVLRGIFTSEIGTKQITQS YDVLRGIFTSEIGTKQITQSALLAEARSDY R G I T K Q 0 0 0 0 0 0 1 2 0 2 0 1 0 1 0 1 2 0 0 0 0 0 10 0 1051.555 P78527 P78527 2941 2950 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0036564 66.621 2 0.76298 1.1405 8.6912 2 Median NaN NaN NaN 0 0 Median 0.76298 1.1405 8.6912 2 0 Median 17814000 10558000 7255900 0 0 0 17814000 10558000 7255900 4323 1427 4426 15426;15427 23338;23339;23340;23341 23339 4 GIGIHHGGLLPILK KKLPQVEHVLPLLKRGIGIHHGGLLPILKE RGIGIHHGGLLPILKETIEILFSEGLIKAL R G I L K E 0 0 0 0 0 0 0 4 2 3 3 1 0 0 1 0 0 0 0 0 0 0 14 0 1423.8664 P42285;A8K6I4;B4E3M6 P42285 451 464 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 3 4.8897E-05 67.456 1 0.33427 0.49192 NaN 1 Median NaN NaN NaN 0 0 Median 0.33427 0.49192 NaN 1 0 Median 8038700 5547700 2490900 0 0 0 8038700 5547700 2490900 4324 1336 4427 15428 23342 23342 1 GIGLAIVR MSSGIHVALVTGGNKGIGLAIVRDLCRLFS LVTGGNKGIGLAIVRDLCRLFSGDVVLTAR K G I V R D 1 1 0 0 0 0 0 2 0 2 1 0 0 0 0 0 0 0 0 1 0 0 8 0 797.51232 E9PQ63;A8MTM1;P16152 E9PQ63 16 23 CBR1 Carbonyl reductase [NADPH] 1 yes no 2 0.0080176 104.94 1 0.71481 0.97405 NaN 1 Median 0.71481 0.97405 NaN 1 0 Median NaN NaN NaN 0 0 Median 53202000 30801000 22400000 53202000 30801000 22400000 0 0 0 4325 657 4428 15429 23343 23343 1 GIGMGNIGPAGMGMEGIGFGINK LGPGGQPIDANHLNKGIGMGNIGPAGMGME PAGMGMEGIGFGINKMGGMEGPFGGGMENM K G I N K M 1 0 2 0 0 0 1 9 0 4 0 1 3 1 1 0 0 0 0 0 0 0 23 0 2177.0432 P52272;A0A087X0X3;Q7KYM9;M0QYL3;M0QZM1 P52272 323 345 HNRNPM;ORF Heterogeneous nuclear ribonucleoprotein M no no 2 2.5856E-08 59.864 1 2.0599 3.3056 NaN 1 Median NaN NaN NaN 0 0 Median 2.0599 3.3056 NaN 1 0 Median 32017000 10387000 21630000 0 0 0 32017000 10387000 21630000 4326 1363;1160 4429 15430 23344 23344 413;414;415 1 GIGYFFVLQPK GVSPKDRCKLICQAKGIGYFFVLQPKVVDG CQAKGIGYFFVLQPKVVDGTPCSPDSTSVC K G I P K V 0 0 0 0 0 1 0 2 0 1 1 1 0 2 1 0 0 0 1 1 0 0 11 0 1267.6965 B2RB33;Q8NE26;Q5HYL0;Q9UHI8 B2RB33 649 659 ADAMTS1;DKFZp686E01144 A disintegrin and metalloproteinase with thrombospondin motifs 1 yes no 2 0.00068951 112.94 3 0.50651 0.6478 NaN 1 Median 0.50651 0.6478 NaN 1 0 Median NaN NaN NaN 0 0 Median 4295200 3119000 1176100 4295200 3119000 1176100 0 0 0 4327 727 4430 15431;15432;15433 23345;23346;23347 23345 3 GIHHGPSVAQPIHLDSTQLSR SKIEWDYECEPGMVKGIHHGPSVAQPIHLD SVAQPIHLDSTQLSRKFISDYLWSLVDTEW K G I S R K 1 1 0 1 0 2 0 2 3 2 2 0 0 0 2 3 1 0 0 1 0 0 21 0 2249.1665 B4E086;Q8NBT2 B4E086 105 125 SPC24 Kinetochore protein Spc24 yes no 4 0.012199 23.296 1 0.52044 0.69295 NaN 1 Median 0.52044 0.69295 NaN 1 0 Median NaN NaN NaN 0 0 Median 19695000 12478000 7217400 19695000 12478000 7217400 0 0 0 4328 884 4431 15434 23348;23349;23350 23348 3 GIHPTIISESFQK IAGSLLDSCTKLLQKGIHPTIISESFQKAL QKGIHPTIISESFQKALEKGIEILTDMSRP K G I Q K A 0 0 0 0 0 1 1 1 1 3 0 1 0 1 1 2 1 0 0 0 0 0 13 0 1455.7722 B7Z9L0;B7Z2Z8;A8K3C3;P50991 B7Z9L0 71 83 CCT4 T-complex protein 1 subunit delta yes no 2 0.0018261 121.61 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2305800 2305800 0 2305800 2305800 0 0 0 0 4329 593 4432 15435 23351 23351 1 GIHQSTIDLK PVYIPEVELNHKLIKGIHQSTIDLKNELKQ HKLIKGIHQSTIDLKNELKQCIGRLQEPTP K G I L K N 0 0 0 1 0 1 0 1 1 2 1 1 0 0 0 1 1 0 0 0 0 0 10 0 1110.6033 Q14258 Q14258 336 345 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 no no 2 0.039463 68.371 1 0.41355 0.54485 NaN 1 Median 0.41355 0.54485 NaN 1 0 Median NaN NaN NaN 0 0 Median 2575200 1761000 814230 2575200 1761000 814230 0 0 0 4330 1485 4433 15436 23352 23352 1 GIIASSVGTILK KYILVTGGVISGIGKGIIASSVGTILKSCG IGKGIIASSVGTILKSCGLHVTSIKIDPYI K G I L K S 1 0 0 0 0 0 0 2 0 3 1 1 0 0 0 2 1 0 0 1 0 0 12 0 1157.702 P17812;B4DMB5;B7Z9C4 P17812 17 28 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.0025625 61.65 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18956000 18956000 0 18956000 18956000 0 0 0 0 4331 1278 4434 15437 23353;23354 23354 2 GIIRPGTAFELLEAQAATGYVIDPIK DATKERLSVYQAMKKGIIRPGTAFELLEAQ LEAQAATGYVIDPIKGLKLTVEEAVRMGIV K G I I K G 4 1 0 1 0 1 2 3 0 4 2 1 0 1 2 0 2 0 1 1 0 0 26 1 2742.4956 Q15149;D3DWL0;Q96IE3 Q15149 4093 4118 PLEC;PLEC1 Plectin yes no 3 1.5479E-21 87.196 3 0.44869 0.5916 57.371 2 Median 0.44869 0.5916 57.371 2 0 Median NaN NaN NaN 0 0 Median 82981000 37376000 45604000 82981000 37376000 45604000 0 0 0 4332 1507 4435 15438;15439;15440 23355;23356;23357;23358 23358 4 GIISILDEECLRPGEATDLTFLEK FNNKIICDLVEEKFKGIISILDEECLRPGE CLRPGEATDLTFLEKLEDTVKHHPHFLTHK K G I E K L 1 1 0 2 1 0 4 2 0 3 4 1 0 1 1 1 2 0 0 0 0 0 24 1 2718.3786 F5H6E2;B7Z3E5;O00159;D3DTH7;B7Z9C0 F5H6E2 465 488 MYO1C Unconventional myosin-Ic yes no 3 8.6358E-68 150.09 4 0.71738 0.93976 2.6084 4 Median 0.71738 0.93976 2.6084 4 0 Median NaN NaN NaN 0 0 Median 101720000 58868000 42848000 101720000 58868000 42848000 0 0 0 4333 905 4436 15441;15442;15443;15444 23359;23360;23361;23362;23363;23364;23365;23366;23367 23364 9 GILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVK DIKKVVKQASEGPLKGILGYTEHQVVSSDF FDAGAGIALNDHFVKLISWYDNEFGYSNRV K G I V K L 3 0 2 4 0 1 1 4 3 2 2 1 0 3 0 5 3 0 1 3 0 0 38 0 4035.8875 V9HVZ4;P04406;Q2TSD0;E7EUT5 V9HVZ4 272 309 HEL-S-162eP;GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 4 1.7478E-24 105.74 2 0.65056 0.80581 2.591 2 Median 0.65056 0.80581 2.591 2 0 Median NaN NaN NaN 0 0 Median 24623000 14247000 10376000 24623000 14247000 10376000 0 0 0 4334 1231 4437 15445;15446 23368;23369;23370;23371;23372 23368 5 GILIPLCESGTCTLR MALKKALFKPGAWFKGILIPLCESGTCTLR GILIPLCESGTCTLREAIIVGSIITKCSIP K G I L R E 0 1 0 0 2 0 1 2 0 2 3 0 0 0 1 1 2 0 0 0 0 0 15 0 1688.859 Q13895 Q13895 289 303 BYSL Bystin yes yes 2 3.1355E-06 119.03 2 0.90658 1.2225 3.7449 2 Median 0.90658 1.2225 3.7449 2 0 Median NaN NaN NaN 0 0 Median 18379000 9086100 9292600 18379000 9086100 9292600 0 0 0 4335 1480 4438 15447;15448 23373;23374;23375;23376 23374 4 GILLFGPPGTGK IKFPHLFTGKRTPWRGILLFGPPGTGKSYL PWRGILLFGPPGTGKSYLAKAVATEANNST R G I G K S 0 0 0 0 0 0 0 4 0 1 2 1 0 1 2 0 1 0 0 0 0 0 12 0 1155.6652 I3L4J1;A0A024R705;Q9UN37;A8K5D8;A8K4G7;A0A024R2C5;B3KNH6;O75351;Q6PIW4 I3L4J1 186 197 VPS4A;VPS4B;FIGNL1 Vacuolar protein sorting-associated protein 4A;Vacuolar protein sorting-associated protein 4B;Fidgetin-like protein 1 yes no 2 0.0021079 79.489 2 0.45734 0.57778 6.8701 2 Median 0.45734 0.57778 6.8701 2 0 Median NaN NaN NaN 0 0 Median 10070000 6909000 3161300 10070000 6909000 3161300 0 0 0 4336 167 4439 15449;15450 23377;23378;23379 23379 3 GILLFGTK GVGITLGAHQSIGFKGILLFGTKAQKEKYL HQSIGFKGILLFGTKAQKEKYLPKLASGET K G I T K A 0 0 0 0 0 0 0 2 0 1 2 1 0 1 0 0 1 0 0 0 0 0 8 0 847.51674 B3KPA6;Q53HR2;B4DEA8;P49748;K7EQP4;B4DYY0;J3QKU9 B3KPA6 112 119 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.0072703 98.418 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4471600 4471600 0 4471600 4471600 0 0 0 0 4337 763 4440 15451;15452 23380;23381 23381 2 GILLQLFGGTR SALAPSIYEHEDIKKGILLQLFGGTRKDFS DIKKGILLQLFGGTRKDFSHTGGGKFRAEI K G I T R K 0 1 0 0 0 1 0 3 0 1 3 0 0 1 0 0 1 0 0 0 0 0 11 0 1173.687 B4DLA6;B3KMX0;A0A024R7U6;P33991;E5RG31 B4DLA6 439 449 MCM4 DNA replication licensing factor MCM4 yes no 2 0.00016334 87.308 1 0.37131 0.49362 NaN 1 Median 0.37131 0.49362 NaN 1 0 Median NaN NaN NaN 0 0 Median 1856400 1405200 451120 1856400 1405200 451120 0 0 0 4338 185 4441 15453 23382 23382 1 GILLQLFGGTRK SALAPSIYEHEDIKKGILLQLFGGTRKDFS IKKGILLQLFGGTRKDFSHTGGGKFRAEIN K G I R K D 0 1 0 0 0 1 0 3 0 1 3 1 0 1 0 0 1 0 0 0 0 0 12 1 1301.782 B4DLA6;B3KMX0;A0A024R7U6;P33991;E5RG31 B4DLA6 439 450 MCM4 DNA replication licensing factor MCM4 yes no 3 0.016543 58.132 2 0.29457 0.37856 NaN 1 Median 0.29457 0.37856 NaN 1 0 Median NaN NaN NaN 0 0 Median 5203900 3984500 1219400 5203900 3984500 1219400 0 0 0 4339 185 4442 15454;15455 23383;23384 23384 2 GILQELFLNK GSNSQERYIQAEREKGILQELFLNKESPHE AEREKGILQELFLNKESPHEPDPEPYEPIP K G I N K E 0 0 1 0 0 1 1 1 0 1 3 1 0 1 0 0 0 0 0 0 0 0 10 0 1173.6758 Q2L6I0;Q96QC0 Q2L6I0 492 501 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes no 2 1.3836E-05 119.41 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1266900 1266900 0 1266900 1266900 0 0 0 0 4340 1527 4443 15456;15457;15458 23385;23386;23387 23387 3 GILRPLSTR LNSSEEDDTEGFSERGILRPLSTRHGVEDD EGFSERGILRPLSTRHGVEDDEEDEEEGEE R G I T R H 0 2 0 0 0 0 0 1 0 1 2 0 0 0 1 1 1 0 0 0 0 0 9 1 1011.6189 Q9Y3T9;B3KNC3;Q9H9J5;Q8NAK7 Q9Y3T9 685 693 NOC2L Nucleolar complex protein 2 homolog yes no 3 0.010487 44.318 1 1 0.58009 0.78517 12.144 2 Median 0.63711 0.85557 NaN 1 0 Median 0.52817 0.72056 NaN 1 0 Median 25977000 16719000 9258900 19149000 12460000 6689000 6828400 4258400 2569900 4341 1820 4444 15459;15460 23388;23389 23388 2 GINKVMAQNNLGMPPMVMS AITDPIMKAKMVALKGINKVMAQNNLGMPP VMAQNNLGMPPMVMS_______________ K G I M S - 1 0 3 0 0 1 0 2 0 1 1 1 4 0 2 1 0 0 0 2 0 0 19 1 2030.9774 Q75MN6 Q75MN6 2167 2185 MLL3 yes yes 3 0.0018152 83.54 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4342 1608 4445 15461 23390 23390 723;724;725 1 GINSSNVENQLQATQAAR NNQGTVNWSVDDIVKGINSSNVENQLQATQ SSNVENQLQATQAARKLLSREKQPPIDNII K G I A R K 3 1 3 0 0 3 1 1 0 1 1 0 0 0 0 2 1 0 0 1 0 0 18 0 1899.9399 Q7Z726;A8K7D9;P52292;J3QLL0;J3KS65 Q7Z726 84 101 KPNA2 Importin subunit alpha;Importin subunit alpha-1 yes no 2 3.8243E-162 304.03 4 2 0.48134 0.67659 4.7103 6 Median 0.50152 0.67659 4.7634 4 0 Median 0.42001 0.67944 6.4366 2 0 Median 193470000 131770000 61695000 78464000 51217000 27248000 115000000 80557000 34447000 4343 633 4446 15462;15463;15464;15465;15466;15467 23391;23392;23393;23394;23395;23396;23397;23398;23399;23400;23401;23402;23403;23404;23405 23394 15 GINVFR TQTTHTDKVPGDEDKGINVFRETAKQKLDP DKVPGDEDKGINVFRETAKQKLDPAASVTG K G I F R E 0 1 1 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 6 0 704.39696 P46013 P46013 2156 2161 MKI67 Antigen KI-67 yes yes 2 0.037607 80.317 1 0.92673 1.2711 NaN 1 Median 0.92673 1.2711 NaN 1 0 Median NaN NaN NaN 0 0 Median 75279000 36215000 39064000 75279000 36215000 39064000 0 0 0 4344 1342 4447 15468 23406 23406 1 GIPHLVTHDAR KYKLCKVRKIFVGTKGIPHLVTHDARTIRY VGTKGIPHLVTHDARTIRYPDPLIKVNDTI K G I A R T 1 1 0 1 0 0 0 1 2 1 1 0 0 0 1 0 1 0 0 1 0 0 11 0 1214.652 B2R491;P62701;Q96IR1;Q53HV1;Q8TD47;C9JEH7;A4FU11;Q496E4;P22090;Q53HI6 B2R491 135 145 RPS4X;RPS4Y2;RPS4Y1 40S ribosomal protein S4;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1 yes no 2;3 1.3315E-07 144.77 7 4 0.76269 1.0201 23.949 10 Median 0.77599 1.0515 7.6902 7 0 Median 0.40955 0.67123 2.7864 3 0 Plateau 1959500000 1129700000 829830000 1702800000 941340000 761510000 256680000 188360000 68322000 4345 681 4448 15469;15470;15471;15472;15473;15474;15475;15476;15477;15478;15479 23407;23408;23409;23410;23411;23412;23413;23414;23415;23416;23417;23418;23419;23420;23421;23422 23407 16 GIPTYIYYFPR WYGTERLIRKHLAARGIPTYIYYFPRSKSA LAARGIPTYIYYFPRSKSAVLHSQSSSSSS R G I P R S 0 1 0 0 0 0 0 1 0 2 0 0 0 1 2 0 1 0 3 0 0 0 11 0 1388.7129 Q9H678;A0A0A0MRH8;B4DLS6;A0A0A0MSH9;X5D2E5;Q86WJ1 Q9H678 376 386 CHD1L Chromodomain-helicase-DNA-binding protein 1-like yes no 2 0.0072695 58.981 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1104900 0 1104900 1104900 0 1104900 0 0 0 4346 387 4449 15480 23423 23423 1 GIPVELWAHYVEELNSTQR VEIPSEWHIELMLDRGIPVELWAHYVEELN ELWAHYVEELNSTQRVAVEDSVFLVFSLKK R G I Q R V 1 1 1 0 0 1 3 1 1 1 2 0 0 0 1 1 1 1 1 2 0 0 19 0 2240.1226 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1 B2RWN5 762 780 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 7.3237E-05 47.68 1 0.60842 0.94324 NaN 1 Median NaN NaN NaN 0 0 Median 0.60842 0.94324 NaN 1 0 Median 28107000 17015000 11092000 0 0 0 28107000 17015000 11092000 4347 748 4450 15481 23424;23425 23424 2 GIPVVEHK IDPENNLISIWNNGKGIPVVEHKVEKMYVP SIWNNGKGIPVVEHKVEKMYVPALIFGQLL K G I H K V 0 0 0 0 0 0 1 1 1 1 0 1 0 0 1 0 0 0 0 2 0 0 8 0 877.50215 P11388;J3KTB7;Q71UH4;Q02880;B4DKD0;E9PCY5 P11388 124 131 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2 0.0047898 106.42 4 2 0.91142 1.1847 7.4507 6 Linear 0.86126 1.1448 4.5007 4 0 Median 0.82187 1.2953 2.2944 2 0 Median 2557000000 1351400000 1205600000 1969700000 1034100000 935590000 587300000 317290000 270010000 4348 1256;1437 4451 15482;15483;15484;15485;15486;15487 23426;23427;23428;23429;23430;23431;23432;23433;23434;23435 23435 10 GIPVVEHKVEK IDPENNLISIWNNGKGIPVVEHKVEKMYVP NNGKGIPVVEHKVEKMYVPALIFGQLLTSS K G I E K M 0 0 0 0 0 0 2 1 1 1 0 2 0 0 1 0 0 0 0 3 0 0 11 1 1233.7081 P11388;J3KTB7;Q71UH4;Q02880;B4DKD0;E9PCY5 P11388 124 134 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2;3 0.0043263 112.3 4 0.89125 1.0978 8.9722 4 Median 0.89125 1.0978 8.9722 4 0 Median NaN NaN NaN 0 0 Median 166900000 82532000 84365000 166900000 82532000 84365000 0 0 0 4349 1256;1437 4452 15488;15489;15490;15491 23436;23437;23438;23439;23440 23437 5 GISAGAVQTAGK NKSPEAKPLPGKLPKGISAGAVQTAGKKGP LPKGISAGAVQTAGKKGPQSLFNAPRGKKR K G I G K K 3 0 0 0 0 1 0 3 0 1 0 1 0 0 0 1 1 0 0 1 0 0 12 0 1058.572 P46087;F5GWB7;F5H709 P46087 80 91 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2 5.7945E-16 142 3 1 0.86212 1.0699 13.842 4 Median 0.87289 1.0825 2.5645 3 0 Median 0.52962 0.82459 NaN 1 0 Median 141100000 77894000 63211000 115450000 61284000 54164000 25657000 16610000 9046700 4350 1343 4453 15492;15493;15494;15495 23441;23442;23443;23444;23445;23446;23447;23448 23443 7 GISEETTTGVHNLYK NLIHTKYPQLLPGIRGISEETTTGVHNLYK GISEETTTGVHNLYKMMANGILKVPAINVN R G I Y K M 0 0 1 0 0 0 2 2 1 1 1 1 0 0 0 1 3 0 1 1 0 0 15 0 1647.8104 Q1RMG2;P23526 Q1RMG2 26 40 AHCY Adenosylhomocysteinase yes no 2 6.9611E-28 158.05 5 0.41916 0.53623 11.739 3 Median 0.41916 0.53623 11.739 3 0 Median NaN NaN NaN 0 0 Median 13342000 9707300 3634600 13342000 9707300 3634600 0 0 0 4351 1294 4454 15496;15497;15498;15499;15500 23449;23450;23451;23452;23453;23454 23449 6 GISEHTVLSVDGK SQKKIINEASQFKPKGISEHTVLSVDGKEV PKGISEHTVLSVDGKEVIGPSSPDLVVASE K G I G K E 0 0 0 1 0 0 1 2 1 1 1 1 0 0 0 2 1 0 0 2 0 0 13 0 1340.6936 Q8N3K9 Q8N3K9 826 838 CMYA5 Cardiomyopathy-associated protein 5 yes yes 2 0.00043725 74.92 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10666000 10666000 0 10666000 10666000 0 0 0 0 4352 1636 4455 15501 23455 23455 1 GISHVIVDEIHER CTVGVLLRKLEAGIRGISHVIVDEIHERDI IRGISHVIVDEIHERDINTDFLLVVLRDVV R G I E R D 0 1 0 1 0 0 2 1 2 3 0 0 0 0 0 1 0 0 0 2 0 0 13 0 1502.7841 Q08211;Q58F26;Q6PJK6 Q08211 504 516 DHX9 ATP-dependent RNA helicase A yes no 3;4 2.9763E-07 128.21 7 2 0.66163 0.88147 20.508 9 Median 0.68517 0.91295 19.916 7 0 Median 0.47443 0.74648 4.6409 2 0 Median 374360000 223460000 150900000 310420000 180180000 130230000 63940000 43280000 20660000 4353 1448 4456 15502;15503;15504;15505;15506;15507;15508;15509;15510 23456;23457;23458;23459;23460;23461;23462;23463;23464;23465;23466;23467;23468;23469;23470;23471 23470 16 GISLNPEQWSQLK EYWMDPEGEMKPGRKGISLNPEQWSQLKEQ RKGISLNPEQWSQLKEQISDIDDAVRKL__ K G I L K E 0 0 1 0 0 2 1 1 0 1 2 1 0 0 1 2 0 1 0 0 0 0 13 0 1498.778 Q6IBA2;Q59G24;P53999;B7Z1Z0 Q6IBA2 102 114 PC4;SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes no 2 0.00044659 83.081 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22967000 0 22967000 0 0 0 22967000 0 22967000 4354 1372 4457 15511;15512 23472;23473 23472 2 GISVHISNAEPK SKIAQSLCGEDLIIKGISVHISNAEPKHNS IIKGISVHISNAEPKHNSNRQLERSGRFGG K G I P K H 1 0 1 0 0 0 1 1 1 2 0 1 0 0 1 2 0 0 0 1 0 0 12 0 1250.6619 A0A087WX29;B4DRW3;A0A0A0N0L3;A0A024R4E2;Q13148;A0A087WW61;A0A087WX67;A0A087WXV3;A0A087WXQ5;A0A087WV68;B1AKP7;G3V162;A0A087X260;A0A087WYY0;A0A087WTZ4;K7EL26;A0A087WYE7;A0A087WZC9 A0A087WX29 195 206 TARDBP;TDP43 TAR DNA-binding protein 43 yes no 2;3 2.7427E-05 129.82 4 0.36293 0.44231 5.5907 3 Median 0.36293 0.44231 5.5907 3 0 Median NaN NaN NaN 0 0 Median 60387000 46977000 13410000 60387000 46977000 13410000 0 0 0 4355 121 4458 15513;15514;15515;15516 23474;23475;23476;23477 23475 4 GISVNAEQVR CKNSHCAQTVSSVFKGISVNAEQVRIELEP SSVFKGISVNAEQVRIELEPPDKAKPLGTV K G I V R I 1 1 1 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 0 2 0 0 10 0 1071.5673 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8 B2RWN5 1153 1162 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 1.5659E-05 111.95 2 0.915 1.2396 NaN 1 Median 0.915 1.2396 NaN 1 0 Median NaN NaN NaN 0 0 Median 44637000 22286000 22352000 44637000 22286000 22352000 0 0 0 4356 748 4459 15517;15518 23478;23479;23480 23479 3 GITGVDLFGTTDAVVK RKKNLSPGAVESDVRGITGVDLFGTTDAVV ITGVDLFGTTDAVVKHVLEGHDRGVNWAAF R G I V K H 1 0 0 2 0 0 0 3 0 1 1 1 0 1 0 0 3 0 0 3 0 0 16 0 1591.8457 P53621 P53621 183 198 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 9.3934E-05 67.153 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23543000 7716900 15826000 7716900 7716900 0 15826000 0 15826000 4357 1371 4460 15519;15520 23481;23482 23481 2 GITINAAHVEYSTAAR KKYEEIDNAPEERARGITINAAHVEYSTAA ITINAAHVEYSTAARHYAHTDCPGHADYVK R G I A R H 4 1 1 0 0 0 1 1 1 2 0 0 0 0 0 1 2 0 1 1 0 0 16 0 1672.8533 P49411 P49411 105 120 TUFM Elongation factor Tu, mitochondrial yes yes 2;3 2.4395E-34 171.36 7 2 0.53885 0.74091 108.98 8 Median 0.48426 0.65414 18.303 6 0 Median 4.513 6.5793 12.954 2 0 Median 109110000 62666000 46443000 82568000 57708000 24859000 26541000 4957200 21584000 4358 1350 4461 15521;15522;15523;15524;15525;15526;15527;15528;15529 23483;23484;23485;23486;23487;23488;23489;23490;23491;23492;23493;23494;23495;23496;23497;23498;23499;23500;23501 23490 19 GITNLCVIGGDGSLTGADTFR EREGRLRAAYNLVKRGITNLCVIGGDGSLT VIGGDGSLTGADTFRSEWSDLLSDLQKAGK R G I F R S 1 1 1 2 1 0 0 5 0 2 2 0 0 1 0 1 3 0 0 1 0 0 21 0 2123.0317 A0A024R0Y5;P08237;A0A0S2Z4A1;Q96I60;A0A0S2Z4I1;F8VSL1;F8VX13;F8VNX2;F8VZQ1 A0A024R0Y5 109 129 PFKM ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type yes no 2 4.9048E-08 113.65 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3248400 3248400 0 3248400 3248400 0 0 0 0 4359 44 4462 15530;15531 23502;23503 23502 2 GITNLCVIGGDGSLTGANLFR TREGRLKAACNLLQRGITNLCVIGGDGSLT VIGGDGSLTGANLFRKEWSGLLEELARNGQ R G I F R K 1 1 2 1 1 0 0 5 0 2 3 0 0 1 0 1 2 0 0 1 0 0 21 0 2134.0841 Q01813;V9GYV7;Q5VSR5 Q01813 118 138 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2 8.387E-72 214.45 4 0.57299 0.76805 13.929 4 Median 0.57299 0.76805 13.929 4 0 Median NaN NaN NaN 0 0 Median 33146000 20020000 13126000 33146000 20020000 13126000 0 0 0 4360 1434 4463 15532;15533;15534;15535 23504;23505;23506;23507;23508 23504 5 GITPLLER GFWAAGWRVWLFFMRGITPLLERWLGNLLA VWLFFMRGITPLLERWLGNLLARQFEGRHS R G I E R W 0 1 0 0 0 0 1 1 0 1 2 0 0 0 1 0 1 0 0 0 0 0 8 0 897.52837 Q6P2Q9;I3L0J9 Q6P2Q9 643 650 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.042337 45.081 1 0.79244 1.1153 NaN 1 Median 0.79244 1.1153 NaN 1 0 Median NaN NaN NaN 0 0 Median 5370500 2632000 2738500 5370500 2632000 2738500 0 0 0 4361 1592 4464 15536 23509 23509 1 GIVDQSQQAYQEAFEISK YYRYLAEVAAGDDKKGIVDQSQQAYQEAFE DQSQQAYQEAFEISKKEMQPTHPIRLGLAL K G I S K K 2 0 0 1 0 4 2 1 0 2 0 1 0 1 0 2 0 0 1 1 0 0 18 0 2039.98 D0PNI1;P63104;B0AZS6;B7Z2E6;H0YB80;Q2F831 D0PNI1 140 157 YWHAZ 14-3-3 protein zeta/delta yes no 2 0.0062385 81.904 2 0.52238 0.6828 NaN 1 Median 0.52238 0.6828 NaN 1 0 Median NaN NaN NaN 0 0 Median 6052600 4387600 1665000 6052600 4387600 1665000 0 0 0 4362 974 4465 15537;15538 23510;23511 23510 2 GIVDSITGQR TENLEKISITEGIERGIVDSITGQRLLEAQ EGIERGIVDSITGQRLLEAQACTGGIIHPT R G I Q R L 0 1 0 1 0 1 0 2 0 2 0 0 0 0 0 1 1 0 0 1 0 0 10 0 1044.5564 P15924;Q4LE79 P15924 2640 2649 DSP;DSP variant protein Desmoplakin yes no 2 0.021679 53.493 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1640100 1640100 0 1640100 1640100 0 0 0 0 4363 1270 4466 15539 23512 23512 1 GIVEESVTGVHR HWVYKKYPNVFKKIRGIVEESVTGVHRLYQ KIRGIVEESVTGVHRLYQLSKAGKLCVPAM R G I H R L 0 1 0 0 0 0 2 2 1 1 0 0 0 0 0 1 1 0 0 3 0 0 12 0 1281.6677 Q2NKW8;A0A024R0A8;V5YQL4;O43865;Q6ZMM9;H0Y8B3;Q6ZNS6;Q96HN2 Q2NKW8 225 236 AHCYL1;FGFR2-AHCYL1;AHCYL2 Adenosylhomocysteinase;Putative adenosylhomocysteinase 2;Putative adenosylhomocysteinase 3 yes no 2 3.3996E-07 140.45 4 2 0.41459 0.58209 122.25 3 Median 0.33424 0.45997 33.299 2 0 Median 2.8607 3.6735 NaN 1 0 Median 30322000 21294000 9028100 23513000 20306000 3206600 6808900 987360 5821500 4364 30 4467 15540;15541;15542;15543;15544;15545 23513;23514;23515;23516;23517;23518;23519;23520 23514 8 GIVEFSGKPAAR RAVVIVDDRGRPSGKGIVEFSGKPAARKAL SGKGIVEFSGKPAARKALDRCSEGSFLLTT K G I A R K 2 1 0 0 0 0 1 2 0 1 0 1 0 1 1 1 0 0 0 1 0 0 12 1 1230.6721 A8K525;A0A0S2Z4Z9;Q15233;H7C367;C9IZL7 A8K525 191 202 NONO Non-POU domain-containing octamer-binding protein yes no 2;3 0.00015412 89.247 4 0.26039 0.33767 34.972 4 Median 0.26039 0.33767 34.972 4 0 Median NaN NaN NaN 0 0 Median 44909000 31736000 13173000 44909000 31736000 13173000 0 0 0 4365 473 4468 15546;15547;15548;15549 23521;23522;23523;23524;23525 23524 5 GIVLEK TALKANPFGGASHAKGIVLEKVGVEAKQPN PFGGASHAKGIVLEKVGVEAKQPNSAIRKC K G I E K V 0 0 0 0 0 0 1 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 6 0 657.40613 A8K517;P62266;D6RD47;D6RDJ2;D6RIX0;D6R9I7 A8K517 49 54 RPS23 40S ribosomal protein S23 yes no 2 0.049712 100.27 1 0.85629 1.1392 NaN 1 Median 0.85629 1.1392 NaN 1 0 Median NaN NaN NaN 0 0 Median 245340000 119680000 125660000 245340000 119680000 125660000 0 0 0 4366 611 4469 15550 23526 23526 1 GIVNEQFLLQR QFATVVEAKLIKHKKGIVNEQFLLQRLADG KHKKGIVNEQFLLQRLADGAIDLYAMVVVL K G I Q R L 0 1 1 0 0 2 1 1 0 1 2 0 0 1 0 0 0 0 0 1 0 0 11 0 1315.7248 B3KPA6;Q53HR2;B4DEA8;P49748;B3KPX1;J3QRJ8 B3KPA6 481 491 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.0052822 58.433 1 2 0.83136 1.1569 16.006 2 Median NaN NaN NaN 0 0 Median 0.83136 1.1569 16.006 2 0 Median 11539000 6396000 5142600 0 0 0 11539000 6396000 5142600 4367 763 4470 15551;15552;15553 23527;23528;23529 23529 3 GIYALAAR TMGGDFSGKNQDCSKGIYALAARDVFLMLK KNQDCSKGIYALAARDVFLMLKKPNYKKLE K G I A R D 3 1 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 8 0 833.47594 O00139;B4DM85 O00139 337 344 KIF2A Kinesin-like protein KIF2A;Kinesin-like protein yes no 2 0.044775 71.378 1 0.82622 1.1451 NaN 1 Median 0.82622 1.1451 NaN 1 0 Median NaN NaN NaN 0 0 Median 4602200 1977500 2624600 4602200 1977500 2624600 0 0 0 4368 1163 4471 15554 23530 23530 1 GIYAYGFEK VDSFDDMNLSESLLRGIYAYGFEKPSAIQQ SESLLRGIYAYGFEKPSAIQQRAILPCIKG R G I E K P 1 0 0 0 0 0 1 2 0 1 0 1 0 1 0 0 0 0 2 0 0 0 9 0 1046.5073 A8K7F6;P60842;A8K088;J3KT12;J3KTB5;Q59F68;J3QS69;J3QR64;J3QL43;J3QLN6;J3QKZ9;B4E047;J3KS25;E7EQG2;Q14240;B4E102;J3KS93;J3KT04;J3KSN7;J3QQP0;E7EMV8;Q86WD0;C9JUF0;Q59GT8;Q5JWW0;E9PBH4;F8WE11;I3L3H2;A0A024R8W0;P38919 A8K7F6 46 54 EIF4A1;EIF4A2;DKFZp566L241;EIF4A3;DDX48 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed;Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed no no 1;2 0.0026861 119.27 5 0.34571 0.43815 3.552 4 Median 0.34571 0.43815 3.552 4 0 Median NaN NaN NaN 0 0 Median 178080000 128480000 49600000 178080000 128480000 49600000 0 0 0 4369 634;206 4472 15555;15556;15557;15558;15559 23531;23532;23533;23534;23535;23536;23537 23536 7 GIYIDPEILEK TSMVGCLWTSKPFGKGIYIDPEILEKTGVA PFGKGIYIDPEILEKTGVAEYKNSLNVVHH K G I E K T 0 0 0 1 0 0 2 1 0 3 1 1 0 0 1 0 0 0 1 0 0 0 11 0 1288.6915 B4DZL4;A0A024RCG4;Q92674 B4DZL4 660 670 FSHPRH1;CENPI Centromere protein I yes no 2 0.014256 44.309 1 0.64122 0.81287 NaN 1 Median 0.64122 0.81287 NaN 1 0 Median NaN NaN NaN 0 0 Median 7709900 4668500 3041500 7709900 4668500 3041500 0 0 0 4370 294 4473 15560 23538 23538 1 GIYPHEPK LQLSLADFRRLCILKGIYPHEPKHKKKVNK RRLCILKGIYPHEPKHKKKVNKGSTAARTF K G I P K H 0 0 0 0 0 0 1 1 1 1 0 1 0 0 2 0 0 0 1 0 0 0 8 0 939.48142 B5MCF9;B2RDF2;O00541 B5MCF9 42 49 PES1 Pescadillo homolog yes no 2;3 0.00071346 120.65 3 1 0.85323 1.0637 5.7337 3 Plateau 0.85323 1.0637 5.7337 3 0 Plateau NaN NaN NaN 0 0 Median 108770000 67406000 41368000 97113000 55745000 41368000 11661000 11661000 0 4371 735 4474 15561;15562;15563;15564 23539;23540;23541;23542;23543 23543 5 GIYQSLEGAVQAGQLK EMELPAKEADKNRSKGIYQSLEGAVQAGQL IYQSLEGAVQAGQLKVPPGYHPLDVEKEWG K G I L K V 2 0 0 0 0 3 1 3 0 1 2 1 0 0 0 1 0 0 1 1 0 0 16 0 1660.8784 Q15149;E9PMV1 Q15149 478 493 PLEC Plectin yes no 2 6.0125E-37 161.19 1 0.90759 1.1476 NaN 1 Median 0.90759 1.1476 NaN 1 0 Median NaN NaN NaN 0 0 Median 11854000 4615900 7237900 11854000 4615900 7237900 0 0 0 4372 1507 4475 15565 23544;23545 23544 2 GKDPTEHIPEIILNNFTTR FKMSSVRLRKEIKRRGKDPTEHIPEIILNN TEHIPEIILNNFTTRLGHSIGRMFASLFPH R G K T R L 0 1 2 1 0 0 2 1 1 3 1 1 0 1 2 0 3 0 0 0 0 0 19 1 2194.1382 Q9H9Y2 Q9H9Y2 236 254 RPF1 Ribosome production factor 1 yes yes 3;4 5.1288E-05 63.392 4 2 0.71792 1.0114 10.009 6 Median 0.7694 1.0114 11.602 4 0 Median 0.63076 0.97356 9.6979 2 0 Median 92229000 49942000 42288000 73934000 39518000 34416000 18296000 10424000 7871800 4373 1747 4476 15566;15567;15568;15569;15570;15571 23546;23547;23548;23549;23550;23551;23552;23553;23554 23550 9 GKEDLQTNSFPVLLTQGLESNDFEMLNK IEERLGAMDIDTHKKGKEDLQTNSFPVLLT LTQGLESNDFEMLNKVLQTRNVNLIKKTVL K G K N K V 0 0 3 2 0 2 3 2 0 0 5 2 1 2 1 2 2 0 0 1 0 0 28 1 3166.5492 Q15061 Q15061 453 480 WDR43 WD repeat-containing protein 43 yes yes 3 0.016542 33.156 1 0.77179 0.96131 NaN 1 Median 0.77179 0.96131 NaN 1 0 Median NaN NaN NaN 0 0 Median 2654800 1525300 1129400 2654800 1525300 1129400 0 0 0 4374 1505 4477 15572 23555 23555 1 GKEEEILK CLLQDLSYYCCLELKGKEEEILKALSGMCN YCCLELKGKEEEILKALSGMCNIDTGLTFA K G K L K A 0 0 0 0 0 0 3 1 0 1 1 2 0 0 0 0 0 0 0 0 0 0 8 1 944.51786 Q96F88;Q99575 Q96F88 257 264 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 0.00086004 100.98 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4167900 4167900 0 0 0 0 4167900 4167900 0 4375 1685 4478 15573 23556 23556 1 GKGEITPAAIQK ______________________________ RQRGKGEITPAAIQKMLDDNNHLIQCIMDS R G K Q K M 2 0 0 0 0 1 1 2 0 2 0 2 0 0 1 0 1 0 0 0 0 0 12 1 1211.6874 A4PIW0;A4PIV9;F5GWN1;J3KRP6;J3QS72;X6R3J2;J3QQM2;J3KT74;J3QQW2;Q4VAX0;Q6FGL9;Q8TDQ9;Q4VAX2;A8K0E5;A0A024RC40;A4PIV8;A4PIV7;Q15532 A4PIW0 12 23 SYT-SSX2;SS18;SYT;SYT-SSX1 Protein SSXT yes no 2 0.021667 50.116 1 0.93309 1.4523 NaN 1 Median NaN NaN NaN 0 0 Median 0.93309 1.4523 NaN 1 0 Median 6987500 3690100 3297400 0 0 0 6987500 3690100 3297400 4376 557 4479 15574 23557 23557 1 GKLDVQFSGLTK GKPTHFTVNAKAAGKGKLDVQFSGLTKGDA AGKGKLDVQFSGLTKGDAVRDVDIIDHHDN K G K T K G 0 0 0 1 0 1 0 2 0 0 2 2 0 1 0 1 1 0 0 1 0 0 12 1 1291.7136 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 905 916 FLNA Filamin-A yes no 2 2.9469E-15 171.67 4 1.0554 1.2931 28.643 3 Median 1.0554 1.2931 28.643 3 0 Median NaN NaN NaN 0 0 Median 52474000 19300000 33174000 52474000 19300000 33174000 0 0 0 4377 1287 4480 15575;15576;15577;15578 23558;23559;23560;23561;23562;23563 23558 6 GKLEAIITPPPAK PNIHPELLAKKRGSKGKLEAIITPPPAKKA SKGKLEAIITPPPAKKAKSPSQKKPVSKKA K G K A K K 2 0 0 0 0 0 1 1 0 2 1 2 0 0 3 0 1 0 0 0 0 0 13 1 1333.7969 O75367;D6RCF2 O75367 122 134 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2;3 7.0412E-12 160.22 5 2 0.76453 0.94261 2.3086 7 Median 0.76701 0.94261 2.6271 5 0 Median 0.58597 0.94256 2.091 2 0 Median 396910000 222940000 173970000 309050000 167630000 141420000 87853000 55306000 32547000 4378 1198 4481 15579;15580;15581;15582;15583;15584;15585 23564;23565;23566;23567;23568;23569;23570;23571;23572;23573;23574;23575;23576;23577;23578 23568 15 GKLEAIITPPPAKK PNIHPELLAKKRGSKGKLEAIITPPPAKKA KGKLEAIITPPPAKKAKSPSQKKPVSKKAG K G K K K A 2 0 0 0 0 0 1 1 0 2 1 3 0 0 3 0 1 0 0 0 0 0 14 2 1461.8919 O75367;D6RCF2 O75367 122 135 H2AFY Core histone macro-H2A.1;Histone H2A yes no 3 0.0056888 39.005 1 0.83288 0.97917 NaN 1 Median 0.83288 0.97917 NaN 1 0 Median NaN NaN NaN 0 0 Median 39161000 20989000 18172000 39161000 20989000 18172000 0 0 0 4379 1198 4482 15586 23579 23579 1 GKLPIVNEDDELVAIIAR ITLKEANEILQRSKKGKLPIVNEDDELVAI PIVNEDDELVAIIARTDLKKNRDYPLASKD K G K A R T 2 1 1 2 0 0 2 1 0 3 2 1 0 0 1 0 0 0 0 2 0 0 18 1 1964.0942 P12268;H0Y4R1;B7Z1G4;Q6QE17;E7ETK5 P12268 207 224 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2;3 1.3478E-15 134.93 5 0.35649 0.47191 3.1274 4 Median 0.35649 0.47191 3.1274 4 0 Median NaN NaN NaN 0 0 Median 185830000 140420000 45410000 185830000 140420000 45410000 0 0 0 4380 1261 4483 15587;15588;15589;15590;15591 23580;23581;23582;23583;23584;23585;23586;23587 23582 8 GKPDLNTALPVR KSRQRVRYDSSNQVKGKPDLNTALPVRQTA QVKGKPDLNTALPVRQTASIFKQPVTKITN K G K V R Q 1 1 1 1 0 0 0 1 0 0 2 1 0 0 2 0 1 0 0 1 0 0 12 1 1279.7248 O95983;B3KMA8;K7EIE8;A0A087WT34;A0A087X1H1;A0A0A0MTS6 O95983 91 102 MBD3 Methyl-CpG-binding domain protein 3 yes no 2 0.0024282 79.148 3 1 0.72836 0.95586 36.348 4 Median 0.72421 0.9327 6.5034 3 0 Median 1.2559 1.895 NaN 1 0 Median 28284000 14768000 13516000 20900000 11322000 9577800 7383500 3445700 3937800 4381 1225 4484 15592;15593;15594;15595 23588;23589;23590;23591;23592 23589 5 GKPDLNTTLPIR KNKQRLRNDPLNQNKGKPDLNTTLPIRQTA QNKGKPDLNTTLPIRQTASIFKQPVTKVTN K G K I R Q 0 1 1 1 0 0 0 1 0 1 2 1 0 0 2 0 2 0 0 0 0 0 12 1 1323.751 Q9UBB5;O60535;J3KSA7 Q9UBB5 235 246 MBD2;NY-CO-41 Methyl-CpG-binding domain protein 2 yes no 2;3 0.0055123 97.597 2 2 1.2115 1.9179 31.48 4 Linear 0.77679 1.0482 3.9241 2 0 Median 1.1581 1.8039 3.295 2 0 Median 31569000 14319000 17250000 8827200 4916400 3910800 22742000 9402300 13339000 4382 1781 4485 15596;15597;15598;15599 23593;23594;23595;23596 23593 4 GKPEIVGSNLDTLVSIGLDEK LERCSSVMLLGMMARGKPEIVGSNLDTLVS GSNLDTLVSIGLDEKFPQDYRLAQQVCHAI R G K E K F 0 0 1 2 0 0 2 3 0 2 3 2 0 0 1 2 1 0 0 2 0 0 21 1 2183.1685 B3KMS0;Q15021;B4E0B7;E7EN77;Q6ZV00 B3KMS0 784 804 NCAPD2 Condensin complex subunit 1 yes no 2;3 1.2749E-31 157.28 7 3 0.69407 0.84841 15.66 8 Median 0.72408 0.88561 16.764 5 0 Median 0.48729 0.78689 1.2379 3 0 Median 722380000 447440000 274940000 540260000 320590000 219670000 182120000 126850000 55264000 4383 757 4486 15600;15601;15602;15603;15604;15605;15606;15607;15608;15609 23597;23598;23599;23600;23601;23602;23603;23604;23605;23606;23607;23608;23609;23610;23611;23612;23613;23614;23615 23601 19 GKPLPEYHVR FLRNELEIPGQYDGRGKPLPEYHVRIAGFD QYDGRGKPLPEYHVRIAGFDERVTVMASLR R G K V R I 0 1 0 0 0 0 1 1 1 0 1 1 0 0 2 0 0 0 1 1 0 0 10 1 1194.6509 P78527 P78527 3709 3718 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.016423 40.883 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30442000 30442000 0 30442000 30442000 0 0 0 0 4384 1427 4487 15610 23616 23616 1 GKSEVPEDLAGFIELFQTPSHTK AASLTGSKRQLRTPKGKSEVPEDLAGFIEL LAGFIELFQTPSHTKESMTNEKTTKVSYRA K G K T K E 1 0 0 1 0 1 3 2 1 1 2 2 0 2 2 2 2 0 0 1 0 0 23 1 2529.2751 P46013 P46013 1702 1724 MKI67 Antigen KI-67 yes yes 3;4 1.5108E-38 154.87 8 2 0.94904 1.1933 13.886 10 Median 0.95295 1.1685 12.363 8 0 Median 0.8838 1.4258 9.5964 2 0 Median 488310000 242460000 245850000 252290000 126120000 126180000 236020000 116350000 119670000 4385 1342 4488 15611;15612;15613;15614;15615;15616;15617;15618;15619;15620 23617;23618;23619;23620;23621;23622;23623;23624;23625;23626;23627;23628;23629;23630;23631;23632;23633 23624 17 GKVEIDQQQLTQQQLNGN DERDEEDEERESKSRGKVEIDQQQLTQQQL EIDQQQLTQQQLNGN_______________ R G K G N - 0 0 2 1 0 6 1 2 0 1 2 1 0 0 0 0 1 0 0 1 0 0 18 1 2040.0236 Q8IWS0;A0A0D9SGE8;B4E138 Q8IWS0 348 365 PHF6 PHD finger protein 6 yes no 2 0.0065122 99.844 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4386 1625 4489 15621 23634 23634 1 GKVEYLLK EEYVVEKVLDRRVVKGKVEYLLKWKGFSDE LDRRVVKGKVEYLLKWKGFSDEDNTWEPEE K G K L K W 0 0 0 0 0 0 1 1 0 0 2 2 0 0 0 0 0 0 1 1 0 0 8 1 948.56442 J3KS05;Q6IBN6;P83916;B5MD17;K7ELA4;C9JWS9 J3KS05 34 41 CBX1 Chromobox protein homolog 1 yes no 2 0.0025266 123.72 3 2 1.1299 1.383 20.777 5 Median 1.1612 1.432 2.0203 3 0 Median 0.60956 0.96976 1.0169 2 0 Median 179300000 91501000 87796000 150380000 73329000 77047000 28922000 18172000 10749000 4387 1137 4490 15622;15623;15624;15625;15626 23635;23636;23637;23638;23639 23635 5 GLAEVAVK RKLKKSNVVSLKAYKGLAEVAVKSLCELLV VSLKAYKGLAEVAVKSLCELLVALPHFNFH K G L V K S 2 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 2 0 0 8 0 785.4647 A8K905;Q8WTT2;B4DXL4 A8K905 337 344 NOC3L Nucleolar complex protein 3 homolog yes no 2 0.024999 54.205 2 1 0.80717 1.1365 15.026 3 Median 0.92694 1.1702 21.116 2 0 Median 0.76887 1.1365 NaN 1 0 Median 36595000 19341000 17254000 30438000 15736000 14702000 6157000 3605000 2552000 4388 643 4491 15627;15628;15629 23640;23641;23642 23641 3 GLAFELVYSPAIK PFYFKRPPINVAIDRGLAFELVYSPAIKDS DRGLAFELVYSPAIKDSTMRRYTISSALNL R G L I K D 2 0 0 0 0 0 1 1 0 1 2 1 0 1 1 1 0 0 1 1 0 0 13 0 1406.781 P78346;Q5VU10;Q5VU11;B4DJR3 P78346 149 161 RPP30 Ribonuclease P protein subunit p30 yes no 2 0.048 43.308 1 0.93597 1.1834 NaN 1 Median 0.93597 1.1834 NaN 1 0 Median NaN NaN NaN 0 0 Median 4310800 2045900 2264900 4310800 2045900 2264900 0 0 0 4389 1425 4492 15630 23643 23643 0 GLAFLDELR MANSTGKAPPDERRKGLAFLDELRQFHHSR PDERRKGLAFLDELRQFHHSRGSPFKKIPA K G L L R Q 1 1 0 1 0 0 1 1 0 0 3 0 0 1 0 0 0 0 0 0 0 0 9 0 1032.5604 Q68CP9 Q68CP9 16 24 ARID2 AT-rich interactive domain-containing protein 2 yes yes 2 0.0017239 82.452 3 2 0.75241 0.98657 6.0361 3 Plateau 0.75241 0.98657 6.0361 3 0 Plateau NaN NaN NaN 0 0 Median 8444200 4885500 3558700 8444200 4885500 3558700 0 0 0 4390 1583 4493 15631;15632;15633;15634;15635 23644;23645;23646;23647;23648;23649;23650;23651 23651 8 GLAHAIR MSCESSMVLGYWDIRGLAHAIRLLLEFTDT VLGYWDIRGLAHAIRLLLEFTDTSYEEKRY R G L I R L 2 1 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 7 0 736.43441 Q6FGJ9;Q59EJ5;P21266;A4UJ43;A0A0A0MTN3;Q5T8R2;Q5T8R1;P46439;X5D7U4;H3BQT3;X5DNN9;B9ZVX7;X5D932;X5DR03;A0A140VKE3;A0A0A0MR85;E7EWW9;Q03013;P09488 Q6FGJ9 16 22 GSTM3;GSTM5;GSTM1;GSTM4 Glutathione S-transferase Mu 3;Glutathione S-transferase Mu 5;Glutathione S-transferase Mu 4;Glutathione S-transferase Mu 1 yes no 2 0.010715 80.999 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7695200 7695200 0 7695200 7695200 0 0 0 0 4391 1286 4494 15636 23652 23652 1 GLAITFVSDENDAK TYLHRVARAGRFGTKGLAITFVSDENDAKI KGLAITFVSDENDAKILNDVQDRFEVNVAE K G L A K I 2 0 1 2 0 0 1 1 0 1 1 1 0 1 0 1 1 0 0 1 0 0 14 0 1478.7253 A0A024RCM3;Q13838;A0A0G2JJZ9;B4DP52;Q69YT6;H0Y400;O00148;B4DX78 O00148 384 397 hCG_2005638;DDX39B;DKFZp547B159;DDX39A Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A no no 2 3.93E-11 152.7 4 2 1.7009 2.5061 93.759 4 Linear 0.39612 0.4972 4.56 3 0 Plateau 2.1085 3.1774 NaN 1 0 Median 93511000 52723000 40788000 57783000 46938000 10845000 35728000 5785400 29943000 4392 1164;296 4495 15637;15638;15639;15640;15641;15642 23653;23654;23655;23656;23657;23658;23659;23660;23661;23662 23655 10 GLAPDLPEDLYHLIK RFVTGNKILRILKSKGLAPDLPEDLYHLIK GLAPDLPEDLYHLIKKAVAVRKHLERNRKD K G L I K K 1 0 0 2 0 0 1 1 1 1 4 1 0 0 2 0 0 0 1 0 0 0 15 0 1692.9087 P62277;J3KMX5 P62277 79 93 RPS13 40S ribosomal protein S13 yes no 2;3 5.3693E-11 151.79 10 3 0.87259 1.1849 7.7246 10 Median 0.87511 1.1452 5.4493 7 0 Median 0.80187 1.2579 5.9719 3 0 Median 876920000 466750000 410170000 727660000 383430000 344230000 149260000 83318000 65943000 4393 1403 4496 15643;15644;15645;15646;15647;15648;15649;15650;15651;15652;15653;15654;15655 23663;23664;23665;23666;23667;23668;23669;23670;23671;23672;23673;23674;23675;23676;23677;23678;23679;23680;23681;23682;23683 23670 21 GLAPNTPGK EMLYGSAPRTPSKRRGLAPNTPGKARKLNT TPSKRRGLAPNTPGKARKLNTTTMSNATAN R G L G K A 1 0 1 0 0 0 0 2 0 0 1 1 0 0 2 0 1 0 0 0 0 0 9 0 853.46577 A0A024RC67;O43663;G3V3N7;H0YL53 A0A024RC67 476 484 PRC1 Protein regulator of cytokinesis 1 yes no 2 0.0045519 75.109 1 0.83085 1.0416 NaN 1 Median 0.83085 1.0416 NaN 1 0 Median NaN NaN NaN 0 0 Median 2167200 1345000 822190 2167200 1345000 822190 0 0 0 4394 288 4497 15656 23684;23685 23685 2 GLAQADGTLITCVDSGILR FQGQRHCPGGEGMFRGLAQADGTLITCVDS ADGTLITCVDSGILRVWHDKDKDTSSDPLL R G L L R V 2 1 0 2 1 1 0 3 0 2 3 0 0 0 0 1 2 0 0 1 0 0 19 0 1959.0095 Q6RFH5;E9PS41;B4E018 Q6RFH5 92 110 WDR74 WD repeat-containing protein 74 yes no 2 3.8626E-111 268.35 5 2 0.71908 0.96344 7.2276 5 Median 0.78819 1.0733 5.5906 3 0 Plateau 0.58581 0.92687 4.8932 2 0 Median 182920000 111930000 70985000 114640000 69159000 45483000 68275000 42773000 25502000 4395 1598 4498 15657;15658;15659;15660;15661;15662;15663 23686;23687;23688;23689;23690;23691;23692;23693;23694;23695;23696;23697;23698;23699 23691 14 GLATSLQNDLQEVPK ETLQNVRTRLEILEKGLATSLQNDLQEVPK GLATSLQNDLQEVPKLYPEFPPKDMCEKLP K G L P K L 1 0 1 1 0 2 1 1 0 0 3 1 0 0 1 1 1 0 0 1 0 0 15 0 1611.8468 B3KMI3;A8K6Q9;A0A024RDV9;Q8N0X7;A0A0S2Z510 B3KMI3 98 112 SPG20 Spartin yes no 2 0.0052463 86.262 2 0.50716 0.66469 NaN 1 Median 0.50716 0.66469 NaN 1 0 Median NaN NaN NaN 0 0 Median 6264300 4342000 1922400 6264300 4342000 1922400 0 0 0 4396 323 4499 15664;15665 23700;23701 23701 2 GLATVIR VTIGGINIAEALVSKGLATVIRYRQDDDQR IAEALVSKGLATVIRYRQDDDQRSSHYDEL K G L I R Y 1 1 0 0 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 7 0 728.45447 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B4E299;B3KU67;I6TRR8;H7C597 A0A140VK49 458 464 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.016534 71.949 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3299400 3299400 0 3299400 3299400 0 0 0 0 4397 508 4500 15666 23702 23702 1 GLCAIAQAESLR PEGSVELYAEKVATRGLCAIAQAESLRYKL ATRGLCAIAQAESLRYKLLGGLAVRRACYG R G L L R Y 3 1 0 0 1 1 1 1 0 1 2 0 0 0 0 1 0 0 0 0 0 0 12 0 1287.6605 P23396;Q53G83;F2Z2S8;H0YCJ7;H0YF32;A7E2S3;Q9NQS8 P23396 95 106 RPS3 40S ribosomal protein S3 yes no 2 2.9317E-16 176.38 4 2 0.72765 1.0041 47.304 6 Median 0.71158 0.97946 7.3937 4 0 Median 1.4978 2.367 10.534 2 0 Median 490990000 275520000 215470000 422670000 248010000 174660000 68322000 27505000 40817000 4398 1293 4501 15667;15668;15669;15670;15671;15672 23703;23704;23705;23706;23707;23708;23709;23710;23711;23712 23704 10 GLDFALLQK SKFLGGDMEHTHLVKGLDFALLQKVRAEIA HTHLVKGLDFALLQKVRAEIASKEKEEEEL K G L Q K V 1 0 0 1 0 1 0 1 0 0 3 1 0 1 0 0 0 0 0 0 0 0 9 0 1003.5702 Q9UK43;Q95HA6;B2R5Y4;Q13123;Q9Y3Z5;D6REL4;Q9H4P6;E7EQZ7 Q9UK43 165 173 CSA2;IK;DKFZp564B112 Protein Red yes no 2 0.0023605 82.671 2 0.63636 0.79827 20.956 2 Median 0.63636 0.79827 20.956 2 0 Median NaN NaN NaN 0 0 Median 3030100 1623400 1406600 3030100 1623400 1406600 0 0 0 4399 695 4502 15673;15674 23713;23714 23714 2 GLDIEGVK DEQIDILVATDVAARGLDIEGVKTVINFTM ATDVAARGLDIEGVKTVINFTMPNTIKHYV R G L V K T 0 0 0 1 0 0 1 2 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 829.45453 B7Z6D5;B3GQE6;Q96GQ7;Q53G15 B7Z6D5 495 502 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 0.0064847 107.43 4 0.97664 1.2078 8.7895 4 Median 0.97664 1.2078 8.7895 4 0 Median NaN NaN NaN 0 0 Median 73422000 36982000 36440000 73422000 36982000 36440000 0 0 0 4400 750 4503 15675;15676;15677;15678 23715;23716;23717;23718;23719;23720;23721 23716 7 GLDIPEVDLVIQSSPPK NGSFGVLVATNVAARGLDIPEVDLVIQSSP DIPEVDLVIQSSPPKDVESYIHRSGRTGRA R G L P K D 0 0 0 2 0 1 1 1 0 2 2 1 0 0 3 2 0 0 0 2 0 0 17 0 1805.9775 Q9NR30 Q9NR30 500 516 DDX21 Nucleolar RNA helicase 2 yes yes 2 2.6229E-18 141.73 4 2 0.67295 0.87507 5.3038 6 Median 0.68328 0.87507 1.9602 4 0 Median 0.5751 0.91187 10.228 2 0 Median 392170000 237240000 154940000 215360000 128390000 86968000 176820000 108850000 67968000 4401 1756 4504 15679;15680;15681;15682;15683;15684 23722;23723;23724;23725;23726;23727;23728;23729;23730;23731;23732;23733 23727 12 GLDIPEVDLVIQSSPPQDVESYIHR EGSFKVLVATNVAARGLDIPEVDLVIQSSP IQSSPPQDVESYIHRSGRTGRAGRTGICIC R G L H R S 0 1 0 3 0 2 2 1 1 3 2 0 0 0 3 3 0 0 1 3 0 0 25 0 2805.4185 Q9BQ39;B4DED6;B4DW97;A0A087WVC1;Q9NTA9 Q9BQ39 451 475 DDX50;DKFZp761E0323 ATP-dependent RNA helicase DDX50 yes no 3 0.00069549 50.215 3 0.82292 1.1207 37.749 2 Median 0.82292 1.1207 37.749 2 0 Median NaN NaN NaN 0 0 Median 29822000 19173000 10649000 29822000 19173000 10649000 0 0 0 4402 1707 4505 15685;15686;15687 23734;23735;23736;23737 23734 4 GLDIPHVDVVVNFDIPTHSK AKARSILLATDVASRGLDIPHVDVVVNFDI HVDVVVNFDIPTHSKDYIHRVGRTARAGRS R G L S K D 0 0 1 3 0 0 0 1 2 2 1 1 0 1 2 1 1 0 0 4 0 0 20 0 2201.1481 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;Q7Z4B1 Q53GJ1 319 338 hCG_27698;DDX47;E4-DBP;MST162 Probable ATP-dependent RNA helicase DDX47 yes no 3;4 0.00065066 62.002 4 1.0177 1.2977 34.641 4 Median 1.0177 1.2977 34.641 4 0 Median NaN NaN NaN 0 0 Median 70145000 35043000 35102000 70145000 35043000 35102000 0 0 0 4403 249 4506 15688;15689;15690;15691 23738;23739;23740;23741;23742 23740 5 GLDIPLLDNVINYSFPAK LGKCSTLIVTDLAARGLDIPLLDNVINYSF IPLLDNVINYSFPAKGKLFLHRVGRVARAG R G L A K G 1 0 2 2 0 0 0 1 0 2 3 1 0 1 2 1 0 0 1 1 0 0 18 0 1988.0619 Q8TDD1 Q8TDD1 401 418 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 0.023894 68.171 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24039000 14552000 9486600 24039000 14552000 9486600 0 0 0 4404 1658 4507 15692 23743 23743 0 GLDISNVK SGKSPILVATAVAARGLDISNVKHVINFDL ATAVAARGLDISNVKHVINFDLPSDIEEYV R G L V K H 0 0 1 1 0 0 0 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 8 0 844.46543 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1;A0A0J9YVQ7 A0A0D9SFB3 504 511 DDX3X ATP-dependent RNA helicase DDX3X yes no 2 0.0080124 79.116 2 0.69284 0.85317 19.524 2 Median 0.69284 0.85317 19.524 2 0 Median NaN NaN NaN 0 0 Median 82428000 47656000 34772000 82428000 47656000 34772000 0 0 0 4405 432 4508 15693;15694 23744;23745 23744 2 GLDNTEFQGK FVHMERAEDAVEAIRGLDNTEFQGKRMHVQ VEAIRGLDNTEFQGKRMHVQLSTSRLRTAP R G L G K R 0 0 1 1 0 1 1 2 0 0 1 1 0 1 0 0 1 0 0 0 0 0 10 0 1107.5197 A8K9U0;Q9BWF3;E9PB51;Q9BQ04 A8K9U0 130 139 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 2 0.015145 55.112 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4406 650 4509 15695 23746 23746 1 GLDPVEILQER LHQKQSRITPIQKPRGLDPVEILQEREYRL QKPRGLDPVEILQEREYRLQARIAHRIQEL R G L E R E 0 1 0 1 0 1 2 1 0 1 2 0 0 0 1 0 0 0 0 1 0 0 11 0 1267.6772 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;Q59FZ6;A5D6X0 A7E2E1 360 370 SMARCA4 Transcription activator BRG1 yes no 2 0.00017469 86.624 3 2 0.72763 0.97189 33.253 5 Median 0.68859 0.94428 5.1226 3 0 Median 1.0821 1.702 2.3822 2 0 Median 111420000 56455000 54970000 47307000 26176000 21131000 64118000 30279000 33839000 4407 403 4510 15696;15697;15698;15699;15700 23747;23748;23749;23750;23751;23752;23753;23754;23755 23750 9 GLDPYNVLAPK QATGLEREIMLAAKKGLDPYNVLAPKGASG AAKKGLDPYNVLAPKGASGTREDPNLVPSI K G L P K G 1 0 1 1 0 0 0 1 0 0 2 1 0 0 2 0 0 0 1 1 0 0 11 0 1185.6394 P10606;Q6FHJ9;Q6FHM4 P10606 58 68 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes no 2 0.0004932 90.657 4 2 0.70043 0.85799 26.584 5 Median 0.66087 0.8541 8.613 3 0 Median 0.88554 1.3064 0.34248 2 0 Median 73788000 46481000 27308000 60604000 39228000 21377000 13184000 7252900 5931100 4408 1251 4511 15701;15702;15703;15704;15705;15706 23756;23757;23758;23759;23760;23761;23762;23763;23764 23759 9 GLDSLFSYLQDK EKECLMLKQLWSSSKGLDSLFSYLQDKIYE SSKGLDSLFSYLQDKIYEV___________ K G L D K I 0 0 0 2 0 1 0 1 0 0 3 1 0 1 0 2 0 0 1 0 0 0 12 0 1384.6874 A0A0B4J291;Q8N8U2 A0A0B4J291 492 503 CDYL2 Chromodomain Y-like protein 2 yes no 2 1.231E-19 187.97 4 2 0.96466 1.2311 13.507 6 Median 0.95872 1.1799 5.9496 4 0 Median 0.96466 1.503 2.1435 2 0 Median 134820000 68031000 66789000 71233000 36494000 34739000 63587000 31537000 32050000 4409 417 4512 15707;15708;15709;15710;15711;15712 23765;23766;23767;23768;23769;23770;23771;23772;23773;23774;23775;23776 23768 12 GLDVDSLVIEHIQVNK LLHMLKNAESNAELKGLDVDSLVIEHIQVN LDVDSLVIEHIQVNKAPKMRRRTYRAHGRI K G L N K A 0 0 1 2 0 1 1 1 1 2 2 1 0 0 0 1 0 0 0 3 0 0 16 0 1777.9574 A0A087WXM6;J3QQT2;J3KRX5;A0A024R261;A0A0A6YYL6;P18621;J3QLC8;A0A0A0MRF8;J3KRB3;A0A087WWH0;J3QS96;A4D1R6;A4D1R5 A0A087WXM6 106 121 RPL17;hCG_24487;RPL17-C18orf32;LOC402695;LOC202789 60S ribosomal protein L17 yes no 2;3 4.0092E-60 225.63 11 4 0.80211 1.0502 38.713 14 Median 0.8084 1.0714 7.5797 10 0 Median 0.3075 0.48835 3.7935 4 0 Median 4589200000 2733100000 1856100000 3460700000 1878800000 1582000000 1128500000 854300000 274180000 4410 81 4513 15713;15714;15715;15716;15717;15718;15719;15720;15721;15722;15723;15724;15725;15726;15727 23777;23778;23779;23780;23781;23782;23783;23784;23785;23786;23787;23788;23789;23790;23791;23792;23793;23794;23795;23796;23797;23798;23799;23800;23801 23778 25 GLDVEDVK HGKAPILIATDVASRGLDVEDVKFVINYDY ATDVASRGLDVEDVKFVINYDYPNSSEDYI R G L V K F 0 0 0 2 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 2 0 0 8 0 873.44436 Q59F66;Q92841;B4DN41;J3KTA4;B5BUE6;P17844;B4DNG2 B4DN41 393 400 DDX17;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 no no 2 0.020264 91.626 2 0.52702 0.67026 4.5677 2 Median 0.52702 0.67026 4.5677 2 0 Median NaN NaN NaN 0 0 Median 86383000 57158000 29225000 86383000 57158000 29225000 0 0 0 4411 833;1554 4514 15728;15729 23802;23803;23804 23802 3 GLDVPQVSLIINYDLPNNR SGASRVLISTDVWARGLDVPQVSLIINYDL PQVSLIINYDLPNNRELYIHRIGRSGRYGR R G L N R E 0 1 3 2 0 1 0 1 0 2 3 0 0 0 2 1 0 0 1 2 0 0 19 0 2139.1324 A0A024R8W0;P38919 A0A024R8W0 340 358 DDX48;EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 1.0605E-17 136.33 4 0.47199 0.63519 10.036 4 Median 0.47199 0.63519 10.036 4 0 Median NaN NaN NaN 0 0 Median 46894000 32371000 14523000 46894000 32371000 14523000 0 0 0 4412 206 4515 15730;15731;15732;15733 23805;23806;23807;23808;23809;23810;23811;23812 23812 8 GLEAAQIK LTEKEGKDQELAKLRGLEAAQIKELEELRQ QELAKLRGLEAAQIKELEELRQTVKQLKEQ R G L I K E 2 0 0 0 0 1 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 8 0 828.47052 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q7Z757;Q4LE64;Q14980 Q4LE64 1071 1078 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.030847 50.966 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2560700 2560700 0 0 0 0 2560700 2560700 0 4413 148;1499 4516 15734 23813 23813 1 GLEALLADPQQK QGTEPLVLFKEGAVRGLEALLADPQQKIET AVRGLEALLADPQQKIETVISDEEVIKWTK R G L Q K I 2 0 0 1 0 2 1 1 0 0 3 1 0 0 1 0 0 0 0 0 0 0 12 0 1281.6929 Q9H8H0;J3QR28;J3QLQ6 Q9H8H0 131 142 NOL11 Nucleolar protein 11 yes no 2 0.00045017 117.71 2 0.84656 1.0774 14.973 2 Median 0.84656 1.0774 14.973 2 0 Median NaN NaN NaN 0 0 Median 46169000 23561000 22608000 46169000 23561000 22608000 0 0 0 4414 1743 4517 15735;15736 23814;23815 23815 2 GLECNFGASSTALK LNEDCSKTQPCDHTKGLECNFGASSTALKG KGLECNFGASSTALKGICRAQSEGRPCEYN K G L L K G 2 0 1 0 1 0 1 2 0 0 2 1 0 1 0 2 1 0 0 0 0 0 14 0 1453.6871 Q6FI18;O00622;B4DI61;Q53FA4;Q9UID7 Q6FI18 75 88 CYR61 Protein CYR61 yes no 2 3.2036E-08 138.99 4 1.6326 2.0416 8.8765 3 Median 1.6326 2.0416 8.8765 3 0 Median NaN NaN NaN 0 0 Median 83116000 23714000 59402000 83116000 23714000 59402000 0 0 0 4415 1168 4518 15737;15738;15739;15740 23816;23817;23818;23819;23820;23821 23821 6 GLEELVK AAGSGELGVTMKGPKGLEELVKQKDFLDGV GVTMKGPKGLEELVKQKDFLDGVYAFEYYP K G L V K Q 0 0 0 0 0 0 2 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 7 0 786.44872 O75369;A0A024R321;Q68CT4;E7EN95 O75369 496 502 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.023196 72.021 2 0.55602 0.70829 3.946 2 Median 0.55602 0.70829 3.946 2 0 Median NaN NaN NaN 0 0 Median 160590000 97733000 62858000 160590000 97733000 62858000 0 0 0 4416 1199 4519 15741;15742 23822;23823 23822 2 GLEFQISNVK DGEIEAVLQKKAKARGLEFQISNVKFEDVG KAKARGLEFQISNVKFEDVGGNDMTLKEVC R G L V K F 0 0 1 0 0 1 1 1 0 1 1 1 0 1 0 1 0 0 0 1 0 0 10 0 1133.6081 B4DLM8;O15381;B4DQJ4;E7EWK7;C9JP83;C9J6P7 B4DLM8 254 263 NVL Nuclear valosin-containing protein-like yes no 2 0.0010086 79.906 2 0.37662 0.46856 NaN 1 Median 0.37662 0.46856 NaN 1 0 Median NaN NaN NaN 0 0 Median 4794500 4009000 785510 4794500 4009000 785510 0 0 0 4417 827 4520 15743;15744 23824;23825;23826 23826 3 GLELLAASEAPRDPPGQAK ______________________________ LAASEAPRDPPGQAKPRGAPVKRPRKTKAI R G L A K P 4 1 0 1 0 1 2 2 0 0 3 1 0 0 3 1 0 0 0 0 0 0 19 1 1919.0112 A0A024R1T1;Q86WX3;F8WFE7 A0A024R1T1 9 27 RPS19BP1 Active regulator of SIRT1 yes no 3 5.6483E-05 98.552 3 2 0.86341 1.161 24.075 5 Median 1.0299 1.3371 19.869 3 0 Median 0.60814 0.97066 0.80534 2 0 Median 61815000 32343000 29472000 32634000 15187000 17447000 29181000 17156000 12025000 4418 67 4521 15745;15746;15747;15748;15749 23827;23828;23829;23830;23831;23832 23829 6 GLENPLPERPR SLDPSNRKPLTVLNKGLENPLPERPREKEE VLNKGLENPLPERPREKEEPVVRETGEVVD K G L P R E 0 2 1 0 0 0 2 1 0 0 2 0 0 0 3 0 0 0 0 0 0 0 11 1 1276.6888 B2R841;P53350;B4E083;Q59GD0;D3DWF3 B2R841 346 356 PLK1 Serine/threonine-protein kinase PLK;Serine/threonine-protein kinase PLK1 yes no 3 0.041986 51.276 1 0.71526 0.99217 NaN 1 Median 0.71526 0.99217 NaN 1 0 Median NaN NaN NaN 0 0 Median 10300000 5937300 4362800 10300000 5937300 4362800 0 0 0 4419 714 4522 15750 23833 23833 1 GLESLPPLRPQQNPVLPVAGER LSEEEIAMAVTAWEKGLESLPPLRPQQNPV LRPQQNPVLPVAGERNVLITSALPYVNNVP K G L E R N 1 2 1 0 0 2 2 2 0 0 4 0 0 0 5 1 0 0 0 2 0 0 22 1 2366.307 A8K492;P56192;B4DF61;B4E0E9;A0A024RBA2 A8K492 243 264 MARS Methionine--tRNA ligase, cytoplasmic yes no 3 9.2911E-06 53.059 3 2 0.58908 0.81503 111.83 5 Median 0.50075 0.67122 14.272 3 0 Median 3.6237 5.3148 6.5036 2 0 Median 80027000 40391000 39636000 52737000 34651000 18086000 27290000 5739600 21550000 4420 602 4523 15751;15752;15753;15754;15755 23834;23835;23836;23837;23838;23839 23838 6 GLEVTDDSPK LIMLDIYAIEELRARGLEVTDDSPKYNYHL ELRARGLEVTDDSPKYNYHLDSSGSYVFEN R G L P K Y 0 0 0 2 0 0 1 1 0 0 1 1 0 0 1 1 1 0 0 1 0 0 10 0 1059.5084 P49588 P49588 477 486 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 0.0138 57.859 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4036100 0 4036100 0 0 0 4036100 0 4036100 4421 1352 4524 15756;15757 23840;23841 23841 2 GLFIIDDK QDYGVLKADEGISFRGLFIIDDKGILRQIT DEGISFRGLFIIDDKGILRQITVNDLPVGR R G L D K G 0 0 0 2 0 0 0 1 0 2 1 1 0 1 0 0 0 0 0 0 0 0 8 0 919.50148 A0A0A0MSI0;Q06830;B2R4P2;A0A0A0MRQ5;H7C3T4;V9HW63;Q13162 A0A0A0MSI0 129 136 PRDX1;PRDX4;HEL-S-97n Peroxiredoxin-1;Peroxiredoxin-4 yes no 2 0.020355 57.177 2 2 1.3068 1.7798 98.126 4 Median 0.63155 0.77086 7.5972 2 0 Median 2.7839 4.1969 10.579 2 0 Median 64733000 33230000 31503000 41597000 26347000 15250000 23137000 6882800 16254000 4422 397 4525 15758;15759;15760;15761 23842;23843;23844;23845;23846;23847 23842 6 GLFIIDPNGVIK RDYGVLLEGSGLALRGLFIIDPNGVIKHLS ALRGLFIIDPNGVIKHLSVNDLPVGRSVEE R G L I K H 0 0 1 1 0 0 0 2 0 3 1 1 0 1 1 0 0 0 0 1 0 0 12 0 1284.7442 Q53HC2;P30048 Q53HC2 185 196 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes no 2 0.0083942 64.711 2 0.58908 0.73974 37.96 2 Median 0.58908 0.73974 37.96 2 0 Median NaN NaN NaN 0 0 Median 6905200 4071300 2833900 6905200 4071300 2833900 0 0 0 4423 1306 4526 15762;15763 23848;23849 23849 1 GLFTGLTPR LFSYAQHIASIDGRRGLFTGLTPRLCSGVL SIDGRRGLFTGLTPRLCSGVLGTVVHGKVL R G L P R L 0 1 0 0 0 0 0 2 0 0 2 0 0 1 1 0 2 0 0 0 0 0 9 0 960.53927 Q9Y6C9;Q53G34;E9PIE4 Q9Y6C9 69 77 MTCH2 Mitochondrial carrier homolog 2 yes no 2 0.0020999 86.833 2 1 0.54019 0.74313 124.31 3 Median 0.50766 0.68909 10.677 2 0 Median 4.0164 5.9104 NaN 1 0 Median 32126000 17286000 14840000 24198000 15270000 8928700 7927700 2016300 5911400 4424 1833 4527 15764;15765;15766 23850;23851;23852;23853 23852 4 GLFVQALPSS ETLEPPAKLARTDARGLFVQALPSS_____ RTDARGLFVQALPSS_______________ R G L S S - 1 0 0 0 0 1 0 1 0 0 2 0 0 1 1 2 0 0 0 1 0 0 10 0 1017.5495 P22670 P22670 970 979 RFX1 MHC class II regulatory factor RFX1 yes yes 1 0.042191 76.774 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 624120 0 0 624120 0 0 0 0 0 4425 1291 4528 15767 23854 23854 1 GLFYFDNSFRPVPLEQTYVGITEK NYEDVATFLRVDPAKGLFYFDNSFRPVPLE RPVPLEQTYVGITEKKAIKRFQIMNEIVYE K G L E K K 0 1 1 1 0 1 2 2 0 1 2 1 0 3 2 1 2 0 2 2 0 0 24 1 2819.417 O75643;A4FU77 O75643 672 695 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 3.0639E-10 88.09 3 0.60599 0.80799 6.8947 2 Median 0.60599 0.80799 6.8947 2 0 Median NaN NaN NaN 0 0 Median 36753000 27613000 9140500 36753000 27613000 9140500 0 0 0 4426 1206 4529 15768;15769;15770 23855;23856;23857 23857 3 GLGAFVIDSDHLGHR GISGSGKSSIAQRLKGLGAFVIDSDHLGHR GLGAFVIDSDHLGHRAYAPGGPAYQPVVEA K G L H R A 1 1 0 2 0 0 0 3 2 1 2 0 0 1 0 1 0 0 0 1 0 0 15 0 1592.8059 Q13057;K7EQ60 Q13057 380 394 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes no 3 1.4497E-05 100.73 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17356000 17356000 0 17356000 17356000 0 0 0 0 4427 1462 4530 15771;15772;15773 23858;23859;23860 23860 3 GLGATFILR KISQFLGICIQRSGRGLGATFILRNVIEGQ IQRSGRGLGATFILRNVIEGQGVEICFELY R G L L R N 1 1 0 0 0 0 0 2 0 1 2 0 0 1 0 0 1 0 0 0 0 0 9 0 946.56 S4R3W9;B4DIG4;A8K5D5;P49406;A0A0A0MRF4 S4R3W9 46 54 MRPL19 39S ribosomal protein L19, mitochondrial yes no 2 0.032089 45.335 2 0.55889 0.74683 NaN 1 Median 0.55889 0.74683 NaN 1 0 Median NaN NaN NaN 0 0 Median 6986700 5183800 1803000 6986700 5183800 1803000 0 0 0 4428 616 4531 15774;15775 23861;23862 23861 2 GLGATTHPTAAVK TLLEISKRFRKEMEKGLGATTHPTAAVKML EKGLGATTHPTAAVKMLPTFVRSTPDGTEH K G L V K M 3 0 0 0 0 0 0 2 1 0 1 1 0 0 1 0 3 0 0 1 0 0 13 0 1222.667 E9PB90;A8K2U2;P52789;Q68E10;Q53SG7 E9PB90 22 34 HK2;DKFZp686M1669 Hexokinase;Hexokinase-2 yes no 2 0.011974 46.64 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2351600 0 2351600 0 0 0 2351600 0 2351600 4429 585 4532 15776;15777 23863;23864 23863 2 GLGILSLK AERKGAAYGLAGLVKGLGILSLKQQEMMAA GLAGLVKGLGILSLKQQEMMAALTDAIQDK K G L L K Q 0 0 0 0 0 0 0 2 0 1 3 1 0 0 0 1 0 0 0 0 0 0 8 0 799.51674 E1NZA1;Q92616;A0A024RBS1 E1NZA1 1407 1414 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.036615 89.296 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4430 1000 4533 15778 23865 23865 1 GLGLDDALEPR DVTRIERIGAHSHIRGLGLDDALEPRQASQ SHIRGLGLDDALEPRQASQGMVGQLAARRA R G L P R Q 1 1 0 2 0 0 1 2 0 0 3 0 0 0 1 0 0 0 0 0 0 0 11 0 1154.5932 Q9Y230;B4DW30;X6R2L4;M0R0Z0 Q9Y230 30 40 RUVBL2 RuvB-like 2 yes no 2 1.0504E-06 118.18 4 2 0.5968 0.80122 33.54 6 Median 0.56879 0.77346 6.4586 4 0 Median 0.92264 1.4605 1.4787 2 0 Median 189330000 113560000 75771000 118890000 78179000 40714000 70434000 35377000 35057000 4431 1801 4534 15779;15780;15781;15782;15783;15784 23866;23867;23868;23869;23870;23871;23872;23873;23874;23875;23876;23877 23871 12 GLGLDESGLAK STTKTQRIASHSHVKGLGLDESGLAKQAAS SHVKGLGLDESGLAKQAASGLVGQENAREA K G L A K Q 1 0 0 1 0 0 1 3 0 0 3 1 0 0 0 1 0 0 0 0 0 0 11 0 1058.5608 B5BUB1;Q9Y265 B5BUB1 23 33 RUVBL1 RuvB-like 1 yes no 2 5.1991E-08 150.36 3 2 0.80206 1.1398 52.573 4 Median 0.55774 0.69686 13.436 2 0 Median 1.0717 1.7148 1.6229 2 0 Median 207990000 126780000 81213000 104060000 76730000 27329000 103930000 50046000 53885000 4432 896 4535 15785;15786;15787;15788;15789 23878;23879;23880;23881;23882;23883;23884;23885 23879 8 GLGLSPDLVVCR EQKTKPTQNSVRELRGLGLSPDLVVCRCSN ELRGLGLSPDLVVCRCSNPLDTSVKEKISM R G L C R C 0 1 0 1 1 0 0 2 0 0 3 0 0 0 1 1 0 0 0 2 0 0 12 0 1284.686 P17812;B4E1E0;B4DMB5;B7Z9C4 P17812 206 217 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.0011271 107.21 1 0.32417 0.43207 NaN 1 Median 0.32417 0.43207 NaN 1 0 Median NaN NaN NaN 0 0 Median 3582100 2696300 885740 3582100 2696300 885740 0 0 0 4433 1278 4536 15790 23886;23887 23886 2 GLGTDEDSLIEIICSR TPAQYDASELKASMKGLGTDEDSLIEIICS LGTDEDSLIEIICSRTNQELQEINRVYKEM K G L S R T 0 1 0 2 1 0 2 2 0 3 2 0 0 0 0 2 1 0 0 0 0 0 16 0 1776.8564 H0YKS4;H0YMD0;H0YMU9;H0YN42;V9HW65;A0A024R5Z7;P07355;H0YMM1;B4DNH8;A6NMY6;H0YM50;H0YNP5;H0YN52;H0YNA0;H0YN28;H0YL33;B3KRQ1;H0YLE2 H0YKS4 120 135 ANXA2;HEL-S-270;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 2 4.8234E-36 174.23 3 0.41837 0.56681 19.867 3 Median 0.41837 0.56681 19.867 3 0 Median NaN NaN NaN 0 0 Median 16747000 11709000 5038300 16747000 11709000 5038300 0 0 0 4434 153 4537 15791;15792;15793 23888;23889;23890;23891;23892 23892 5 GLGTGQGAVSGPPR KPEEPPPPKKPALDKGLGTGQGAVSGPPRK KGLGTGQGAVSGPPRKPPGTVAGTARGPEG K G L P R K 1 1 0 0 0 1 0 5 0 0 1 0 0 0 2 1 1 0 0 1 0 0 14 0 1252.6524 A0A024R570;A0A024R5E3;A0A024R5D2;O00255;Q9UE24;E7EN32;G9G6R5 A0A024R570 468 481 MEN1 Menin yes no 2 1.3252E-09 99.283 2 0.62952 0.88388 5.5302 2 Median NaN NaN NaN 0 0 Median 0.62952 0.88388 5.5302 2 0 Median 19022000 11977000 7045300 0 0 0 19022000 11977000 7045300 4435 135 4538 15794;15795 23893;23894;23895;23896 23896 4 GLGTGTLYIAESR LLRQQPDTEAVLNGKGLGTGTLYIAESRLS GKGLGTGTLYIAESRLSWLDGSGLGFSLEY K G L S R L 1 1 0 0 0 0 1 3 0 1 2 0 0 0 0 1 2 0 1 0 0 0 13 0 1336.6987 E9PMI6;E9PJF4;J3KN38;P54105 E9PMI6 31 43 CLNS1A Methylosome subunit pICln yes no 2 0.00044267 79.659 2 0.33095 0.46019 NaN 1 Median 0.33095 0.46019 NaN 1 0 Median NaN NaN NaN 0 0 Median 12296000 11084000 1212200 12296000 11084000 1212200 0 0 0 4436 1034 4539 15796;15797 23897;23898 23898 2 GLHQSIEEFR GVDLPSVEAQLGSHRGLHQSIEEFRAKIER LGSHRGLHQSIEEFRAKIERARSDEGQLSP R G L F R A 0 1 0 0 0 1 2 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 10 0 1214.6044 Q15149;E9PMV1 Q15149 697 706 PLEC Plectin yes no 2;3 0.0018854 86.882 3 1.0103 1.3447 19.111 3 Median 1.0103 1.3447 19.111 3 0 Median NaN NaN NaN 0 0 Median 35030000 17146000 17883000 35030000 17146000 17883000 0 0 0 4437 1507 4540 15798;15799;15800 23899;23900;23901 23899 3 GLHVVEVTYDDVPIPNSPFK NADGTYQVEYTPFEKGLHVVEVTYDDVPIP EVTYDDVPIPNSPFKVAVTEGCQPSRVQAQ K G L F K V 0 0 1 2 0 0 1 1 1 1 1 1 0 1 3 1 1 0 1 4 0 0 20 0 2225.1368 O75369;A0A024R321;Q68CT4;E7EN95 O75369 1300 1319 FLNB;DKFZp686A1668 Filamin-B yes no 3 2.9267E-07 63.827 1 0.84056 1.064 NaN 1 Median 0.84056 1.064 NaN 1 0 Median NaN NaN NaN 0 0 Median 13885000 8055600 5829800 13885000 8055600 5829800 0 0 0 4438 1199 4541 15801 23902;23903 23903 2 GLIDYETFK PETNKEMSVQEAYKKGLIDYETFKELCEQE QEAYKKGLIDYETFKELCEQECEWEEITIT K G L F K E 0 0 0 1 0 0 1 1 0 1 1 1 0 1 0 0 1 0 1 0 0 0 9 0 1084.5441 P15924;Q4LE79 P15924 2486 2494 DSP;DSP variant protein Desmoplakin yes no 2 0.020552 84.568 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1493100 1493100 0 1493100 1493100 0 0 0 0 4439 1270 4542 15802 23904 23904 1 GLIEIISNAAEYENIPIR IELFSMSLNAKTKVRGLIEIISNAAEYENI EIISNAAEYENIPIRHHEDNLLRQLAQKVP R G L I R H 2 1 2 0 0 0 3 1 0 5 1 0 0 0 1 1 0 0 1 0 0 0 18 0 2014.0735 O75643;A4FU77;B4E150;B4E0P5;Q9UNV9;A2RRQ7;Q7L5W4;Q9P172 O75643 1844 1861 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 1.0206E-23 192.65 3 0.62112 0.83181 15.696 3 Median 0.62112 0.83181 15.696 3 0 Median NaN NaN NaN 0 0 Median 35010000 22141000 12870000 35010000 22141000 12870000 0 0 0 4440 1206 4543 15803;15804;15805 23905;23906;23907;23908;23909 23906 5 GLIVYQLENQPSEFR ADVIYPMAVVATAERGLIVYQLENQPSEFR GLIVYQLENQPSEFRRIESPLKHQRQR___ R G L F R R 0 1 1 0 0 2 2 1 0 1 2 0 0 1 1 1 0 0 1 1 0 0 15 0 1791.9155 E9PPG9;Q5J8M4;E9PQ57;P78406 E9PPG9 191 205 RAE1 mRNA export factor yes no 2 0.00028741 96.334 2 0.51152 0.72699 NaN 1 Median 0.51152 0.72699 NaN 1 0 Median NaN NaN NaN 0 0 Median 5551300 5003900 547410 5551300 5003900 547410 0 0 0 4441 1042 4544 15806;15807 23910;23911 23911 2 GLLCLGNVISALGDDK KAEGDRLKEGININRGLLCLGNVISALGDD LLCLGNVISALGDDKKGGFVPYRDSKLTRL R G L D K K 1 0 1 2 1 0 0 3 0 1 4 1 0 0 0 1 0 0 0 1 0 0 16 0 1643.8553 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 269 284 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 2.2763E-33 182.71 4 0.86612 1.09 4.3656 4 Median 0.86612 1.09 4.3656 4 0 Median NaN NaN NaN 0 0 Median 66150000 36245000 29905000 66150000 36245000 29905000 0 0 0 4442 1216 4545 15808;15809;15810;15811 23912;23913;23914;23915;23916;23917;23918 23912 7 GLLCLGNVISALGDDKK KAEGDRLKEGININRGLLCLGNVISALGDD LCLGNVISALGDDKKGGFVPYRDSKLTRLL R G L K K G 1 0 1 2 1 0 0 3 0 1 4 2 0 0 0 1 0 0 0 1 0 0 17 1 1771.9502 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 269 285 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2;3 9.9071E-35 189.33 6 2 0.84523 1.0622 11.317 8 Median 0.91289 1.1237 11.503 6 0 Median 0.60976 0.97952 7.4544 2 0 Median 174070000 98921000 75153000 109540000 56511000 53026000 64537000 42411000 22127000 4443 1216 4546 15812;15813;15814;15815;15816;15817;15818;15819 23919;23920;23921;23922;23923;23924;23925;23926;23927;23928;23929;23930;23931;23932;23933;23934 23920 15 GLLEDVQEGR WDLLSSCHFTEEQRRGLLEDVQEGRTTVPQ EEQRRGLLEDVQEGRTTVPQLLASVQRWVQ R G L G R T 0 1 0 1 0 1 2 2 0 0 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1114.5619 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 1160 1169 EPPK1 Epiplakin no no 2 0.018993 54.982 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5044300 0 5044300 0 0 0 5044300 0 5044300 4444 373;1386 4547 15820;15821 23935;23936 23935 2 GLLEESSFATLFPK DGWKEPAFSKEDNPRGLLEESSFATLFPKY RGLLEESSFATLFPKYREAYLKECWPLVQK R G L P K Y 1 0 0 0 0 0 2 1 0 0 3 1 0 2 1 2 1 0 0 0 0 0 14 0 1537.8028 Q13601;B4DMS5 Q13601 53 66 KRR1 KRR1 small subunit processome component homolog yes no 2 1.8981E-29 169.65 5 2 0.83726 1.1512 7.6703 6 Median 0.89662 1.1191 7.0604 4 0 Median 0.76407 1.2212 1.4168 2 0 Median 229340000 119690000 109650000 139170000 68887000 70280000 90172000 50805000 39368000 4445 1473 4548 15822;15823;15824;15825;15826;15827;15828 23937;23938;23939;23940;23941;23942;23943;23944;23945;23946;23947 23942 11 GLLGCNIIPLQR EKHQLRLVPTRWAGKGLLGCNIIPLQR___ AGKGLLGCNIIPLQR_______________ K G L Q R - 0 1 1 0 1 1 0 2 0 2 3 0 0 0 1 0 0 0 0 0 0 0 12 0 1352.7598 J3KN29;O00233 J3KN29 211 222 PSMD9 26S proteasome non-ATPase regulatory subunit 9 yes no 2 0.0018534 58.981 1 0.45185 0.61317 NaN 1 Median 0.45185 0.61317 NaN 1 0 Median NaN NaN NaN 0 0 Median 5375400 3684200 1691200 5375400 3684200 1691200 0 0 0 4446 1131 4549 15829 23948 23948 1 GLLINFIHHNWPSLLR IMIMTDQDQDGSHIKGLLINFIHHNWPSLL LLINFIHHNWPSLLRHRFLEEFITPIVKVS K G L L R H 0 1 2 0 0 0 0 1 2 2 4 0 0 1 1 1 0 1 0 0 0 0 16 0 1929.0737 P11388 P11388 551 566 TOP2A DNA topoisomerase 2-alpha yes yes 3;4 1.7026E-09 84.508 4 0.73649 1.747 58.804 4 Linear NaN NaN NaN 0 0 Median 0.73649 1.747 58.804 4 0 Linear 1307900000 758440000 549410000 0 0 0 1307900000 758440000 549410000 4447 1256 4550 15830;15831;15832;15833 23949;23950;23951;23952;23953;23954 23953 6 GLLKPGLNVVLEGPK ESLVTDRELQDAFSRGLLKPGLNVVLEGPK GLLKPGLNVVLEGPKKAVNDVNGLKQCLAE R G L P K K 0 0 1 0 0 0 1 3 0 0 4 2 0 0 2 0 0 0 0 2 0 0 15 1 1532.929 Q6IB29;H7C2Q8;Q99848;B4DHA6;B4DRX8 Q6IB29 30 44 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 3 7.9803E-06 100.18 2 1 1.0901 1.39 10.345 3 Median 1.1557 1.4462 5.6105 2 0 Median 0.77048 1.2256 NaN 1 0 Median 42220000 22378000 19842000 17669000 8029600 9639500 24551000 14348000 10203000 4448 1123 4551 15834;15835;15836 23955;23956;23957;23958 23958 4 GLLKPGLNVVLEGPKK ESLVTDRELQDAFSRGLLKPGLNVVLEGPK LLKPGLNVVLEGPKKAVNDVNGLKQCLAEF R G L K K A 0 0 1 0 0 0 1 3 0 0 4 3 0 0 2 0 0 0 0 2 0 0 16 2 1661.024 Q6IB29;H7C2Q8;Q99848;B4DHA6;B4DRX8 Q6IB29 30 45 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 3 0.0002216 106.6 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4449 1123 4552 15837 23959 23959 1 GLLPDSFHTETLEDTEKPSVNERPSEK KRSKKEGHPGGTTPKGLLPDSFHTETLEDT EDTEKPSVNERPSEKDAEQEGEGGGIITRQ K G L E K D 0 1 1 2 0 0 5 1 1 0 3 2 0 1 3 3 3 0 0 1 0 0 27 2 3054.4782 A0A1B0GUH9;A0A1P0AZG4;A0PJI9 A0A1B0GUH9 841 867 C10orf12 yes no 4 0.046157 9.2092 1 0.81106 0.95329 NaN 1 Median 0.81106 0.95329 NaN 1 0 Median NaN NaN NaN 0 0 Median 5617000 3221700 2395300 5617000 3221700 2395300 0 0 0 4450 517 4553 15838 23960 23960 1 GLLPEELTPLILATQK AGIAKVLVAQHDVYKGLLPEELTPLILATQ LLPEELTPLILATQKQFNYTHICAGASAFG K G L Q K Q 1 0 0 0 0 1 2 1 0 1 5 1 0 0 2 0 2 0 0 0 0 0 16 0 1735.0131 A0A0S2Z3L0;P13804;H0YL12;H0YKF0;H0YLU7;A0A0S2Z3M4 A0A0S2Z3L0 86 101 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 2 2.2255E-13 142.12 3 0.41353 0.53467 10.374 3 Median 0.41353 0.53467 10.374 3 0 Median NaN NaN NaN 0 0 Median 26130000 18338000 7792800 26130000 18338000 7792800 0 0 0 4451 455 4554 15839;15840;15841 23961;23962;23963;23964;23965;23966;23967;23968 23968 8 GLLQPVK KASSRKRTLAEPPAKGLLQPVKLSRAELYK TLAEPPAKGLLQPVKLSRAELYKEPTNEEL K G L V K L 0 0 0 0 0 1 0 1 0 0 2 1 0 0 1 0 0 0 0 1 0 0 7 0 753.47487 Q9H6R4;A0A0A0MRW6;B4DF80 Q9H6R4 48 54 NOL6 Nucleolar protein 6 yes no 2 0.029548 64.276 2 0.95685 1.1739 5.1245 2 Median 0.95685 1.1739 5.1245 2 0 Median NaN NaN NaN 0 0 Median 57332000 27810000 29522000 57332000 27810000 29522000 0 0 0 4452 1738 4555 15842;15843 23969;23970;23971 23969 3 GLLSAEVAR PGSRQTLSIYQALKKGLLSAEVARLLLEAQ YQALKKGLLSAEVARLLLEAQAATGFLLDP K G L A R L 2 1 0 0 0 0 1 1 0 0 2 0 0 0 0 1 0 0 0 1 0 0 9 0 914.51853 Q15149;D3DWL0;Q96IE3 Q15149 3850 3858 PLEC;PLEC1 Plectin yes no 2 0.0027896 96.19 3 0.62931 0.8382 3.6773 3 Median 0.62931 0.8382 3.6773 3 0 Median NaN NaN NaN 0 0 Median 64729000 38334000 26395000 64729000 38334000 26395000 0 0 0 4453 1507 4556 15844;15845;15846 23972;23973;23974 23974 3 GLLSSLDHTSIR SDLELHPPSYPWSHRGLLSSLDHTSIRRGF SHRGLLSSLDHTSIRRGFQVYKQVCASCHS R G L I R R 0 1 0 1 0 0 0 1 1 1 3 0 0 0 0 3 1 0 0 0 0 0 12 0 1297.699 Q8TBT6;P08574 Q8TBT6 90 101 CYC1 Cytochrome c1, heme protein, mitochondrial yes no 2;3 0.00069369 61.765 2 0.49216 0.68204 35.621 2 Median 0.49216 0.68204 35.621 2 0 Median NaN NaN NaN 0 0 Median 6810800 3765700 3045100 6810800 3765700 3045100 0 0 0 4454 1244 4557 15847;15848 23975;23976 23976 2 GLLSSLDHTSIRR SDLELHPPSYPWSHRGLLSSLDHTSIRRGF HRGLLSSLDHTSIRRGFQVYKQVCASCHSM R G L R R G 0 2 0 1 0 0 0 1 1 1 3 0 0 0 0 3 1 0 0 0 0 0 13 1 1453.8001 Q8TBT6;P08574 Q8TBT6 90 102 CYC1 Cytochrome c1, heme protein, mitochondrial yes no 3 0.0013619 42.809 1 1.2643 1.6888 NaN 1 Median NaN NaN NaN 0 0 Median 1.2643 1.6888 NaN 1 0 Median 4140900 1871100 2269800 0 0 0 4140900 1871100 2269800 4455 1244 4558 15849 23977 23977 1 GLLVDRPSETK LCADYAEQDELDYHRGLLVDRPSETKTEEQ DYHRGLLVDRPSETKTEEQGIPRPLHPPPP R G L T K T 0 1 0 1 0 0 1 1 0 0 2 1 0 0 1 1 1 0 0 1 0 0 11 1 1213.6667 B4DQZ7;G3V3B0;Q69YJ6;S4R3H4;E7EQT4;Q9UKV3 B4DQZ7 1001 1011 ACIN1;DKFZp667N107 Apoptotic chromatin condensation inducer in the nucleus yes no 2 0.042728 59.067 1 0.71871 1.0768 NaN 1 Median NaN NaN NaN 0 0 Median 0.71871 1.0768 NaN 1 0 Median 4293400 2213000 2080400 0 0 0 4293400 2213000 2080400 4456 851 4559 15850 23978 23978 1 GLPFGCSK PNSPDTANDGFVRLRGLPFGCSKEEIVQFF DGFVRLRGLPFGCSKEEIVQFFSGLEIVPN R G L S K E 0 0 0 0 1 0 0 2 0 0 1 1 0 1 1 1 0 0 0 0 0 0 8 0 864.41637 G8JLB6;P31943;E9PCY7;D6RIU0;D6RBM0;D6RAM1;D6R9T0;D6RFM3;D6RIT2;D6RDU3;D6RJ04;D6RIH9;E5RGH4;E5RGV0;H0YAQ2;P55795;Q53F48;A0A024QZK8;P31942;B4DHY1 G8JLB6 117 124 HNRNPH1;HNRNPH2;HNRPH3;HNRNPH3 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein H3 no no 2 0.0010368 143.02 3 0.26319 0.33188 12.174 3 Median 0.26319 0.33188 12.174 3 0 Median NaN NaN NaN 0 0 Median 78716000 62650000 16066000 78716000 62650000 16066000 0 0 0 4457 1084;1380;15 4560 15851;15852;15853 23979;23980;23981 23979 3 GLPGDVTNQEVHDLLSDYELK HTERQFRNRRKILIRGLPGDVTNQEVHDLL TNQEVHDLLSDYELKYCFVDKYKGTAFVTL R G L L K Y 0 0 1 3 0 1 2 2 1 0 4 1 0 0 1 1 1 0 1 2 0 0 21 0 2341.1438 A0A087WZ13;E9PAU2;K7EKR9;Q8IY67 A0A087WZ13 65 85 RAVER1 Ribonucleoprotein PTB-binding 1 yes no 3 7.879E-05 76.155 2 0.45128 0.59283 NaN 1 Median 0.45128 0.59283 NaN 1 0 Median NaN NaN NaN 0 0 Median 3875900 3228800 647070 3875900 3228800 647070 0 0 0 4458 366 4561 15854;15855 23982;23983 23982 2 GLPLGSAVSSPVLFSPVGR AGLGPGSTPRTASRKGLPLGSAVSSPVLFS GSAVSSPVLFSPVGRRSSLSSRGTPTRMFP K G L G R R 1 1 0 0 0 0 0 3 0 0 3 0 0 1 3 4 0 0 0 3 0 0 19 0 1839.0254 Q8WUM0;B4E206 Q8WUM0 36 54 NUP133 Nuclear pore complex protein Nup133 yes no 2 5.4306E-06 65.472 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3926500 3926500 0 3926500 3926500 0 0 0 0 4459 1666 4562 15856 23984 23984 1 GLPNLITHK VDTIFECKLCRSLFRGLPNLITHKKFYCPP CRSLFRGLPNLITHKKFYCPPSLQMDDNLP R G L H K K 0 0 1 0 0 0 0 1 1 1 2 1 0 0 1 0 1 0 0 0 0 0 9 0 991.58147 Q2TB10;C9JHX9;A0A087WXB4;C9K0M9;C9JLY3 Q2TB10 80 88 ZNF800 Zinc finger protein 800 yes no 2 0.024281 49.423 1 0.80868 1.1163 NaN 1 Median NaN NaN NaN 0 0 Median 0.80868 1.1163 NaN 1 0 Median 5406200 3121500 2284700 0 0 0 5406200 3121500 2284700 4460 1530 4563 15857 23985 23985 1 GLPWSCSADEVQR MLGTEGGEGFVVKVRGLPWSCSADEVQRFF VRGLPWSCSADEVQRFFSDCKIQNGAQGIR R G L Q R F 1 1 0 1 1 1 1 1 0 0 1 0 0 0 1 2 0 1 0 1 0 0 13 0 1503.6776 G8JLB6;P31943;E9PCY7;D6RIU0;D6RBM0;D6RAM1;D6R9T0;D6RFM3;D6RIT2;D6RDU3;D6RJ04;D6RIH9;E7EQJ0;E5RGV0;E7EN40;D6RDL0;D6R9D3;D6RF17 G8JLB6 17 29 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 2 0.050704 35.71 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1655600 0 1655600 0 0 0 1655600 0 1655600 4461 1084 4564 15858 23986 23986 1 GLPYLVNEDDVR KTRPLKAENPYLFLRGLPYLVNEDDVRVFF FLRGLPYLVNEDDVRVFFSGLCVDGVIFLK R G L V R V 0 1 1 2 0 0 1 1 0 0 2 0 0 0 1 0 0 0 1 2 0 0 12 0 1388.6936 B9ZVT1;Q8IXT5 B9ZVT1 161 172 RBM12B RNA-binding protein 12B yes no 2 0.030454 83.883 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4462 931 4565 15859 23987 23987 1 GLQAPAGEPTQEASGVAAAK HKVYPLVRQCLAPARGLQAPAGEPTQEASG AGEPTQEASGVAAAKAGMNRVFLQRLLWLL R G L A K A 6 0 0 0 0 2 2 3 0 0 1 1 0 0 2 1 1 0 0 1 0 0 20 0 1851.9327 P33897 P33897 45 64 ABCD1 ATP-binding cassette sub-family D member 1 yes yes 2 4.1542E-08 130.66 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2362400 2362400 0 2362400 2362400 0 0 0 0 4463 1315 4566 15860;15861 23988;23989 23988 2 GLQAQIASSGLTVEVDAPK EELLFMKKNHEEEVKGLQAQIASSGLTVEV QIASSGLTVEVDAPKSQDLAKIMADIRAQY K G L P K S 3 0 0 1 0 2 1 2 0 1 2 1 0 0 1 2 1 0 0 2 0 0 19 0 1883 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965 F8VZY9 223 241 KRT18 Keratin, type I cytoskeletal 18 yes no 2 6.5496E-54 176.32 2 1 0.70268 0.86298 32.962 3 Median 0.60721 0.75657 18.61 2 0 Median 0.83955 1.277 NaN 1 0 Median 43630000 24812000 18818000 31867000 18467000 13401000 11763000 6345800 5417100 4464 252 4567 15862;15863;15864 23990;23991;23992 23991 2 GLQCGAPLSLVDLAGSER HSVFQLQISGEHSSRGLQCGAPLSLVDLAG CGAPLSLVDLAGSERLDPGLALGPGERERL R G L E R L 2 1 0 1 1 1 1 3 0 0 4 0 0 0 1 2 0 0 0 1 0 0 18 0 1841.9305 A0A024RCS7;Q9BW19;B4DMA8;B4E063;A0A087X1W5 A0A024RCS7 554 571 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 1.0425E-14 127.36 3 0.65947 0.90877 21.261 3 Median 0.65947 0.90877 21.261 3 0 Median NaN NaN NaN 0 0 Median 18094000 10604000 7490200 18094000 10604000 7490200 0 0 0 4465 303 4568 15865;15866;15867 23993;23994;23995;23996;23997;23998 23996 6 GLQEFLDR SVPCQLLESVLQELKGLQEFLDRNSQFAGG SVLQELKGLQEFLDRNSQFAGGPLGNPNTT K G L D R N 0 1 0 1 0 1 1 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 976.49779 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 678 685 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.02639 54.157 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 951170 0 951170 0 0 0 951170 0 951170 4466 29 4569 15868 23999 23999 1 GLQEVGLPLHR DLVNAHVVPGSGVVKGLQEVGLPLHRGCLL GVVKGLQEVGLPLHRGCLLIAEMSSTGSLA K G L H R G 0 1 0 0 0 1 1 2 1 0 3 0 0 0 1 0 0 0 0 1 0 0 11 0 1217.6881 B5LY71;A8K5J1;P11172;B5LY69;B5LY70;B5LY64 B5LY71 353 363 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase;Orotidine 5-phosphate decarboxylase yes no 2 0.022131 48.423 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2378900 2378900 0 2378900 2378900 0 0 0 0 4467 617 4570 15869 24000 24000 1 GLQSYYAVAHAVTER QDVDDEYGVSQALARGLQSYYAVAHAVTER GLQSYYAVAHAVTERVDKQSALMVNGVLKQ R G L E R V 3 1 0 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 2 2 0 0 15 0 1663.8318 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;Q59FZ6 A7E2E1 727 741 SMARCA4 Transcription activator BRG1 yes no 2;3 1.3382E-05 120.9 5 0.56046 0.74129 23.662 3 Median 0.56046 0.74129 23.662 3 0 Median NaN NaN NaN 0 0 Median 45732000 29539000 16193000 45732000 29539000 16193000 0 0 0 4468 403 4571 15870;15871;15872;15873;15874 24001;24002;24003;24004;24005;24006;24007 24006 7 GLSAEEVTR ALMGLSVRELNRHLRGLSAEEVTRLKQRRR LNRHLRGLSAEEVTRLKQRRRTLKNRGYAA R G L T R L 1 1 0 0 0 0 2 1 0 0 1 0 0 0 0 1 1 0 0 1 0 0 9 0 960.48762 Q9ULX9;B0QY70;B0QY71 Q9ULX9 43 51 MAFF Transcription factor MafF yes no 2 0.0024742 84.743 3 1 1.1893 1.6015 7.7116 4 Median 1.1436 1.557 5.9989 3 0 Median 1.2369 1.7498 NaN 1 0 Median 26603000 12007000 14597000 19336000 8880400 10455000 7267900 3126300 4141600 4469 1793 4572 15875;15876;15877;15878 24008;24009;24010;24011 24010 4 GLSAHTHVELPYYSK WEKLQKDDTDPGQLKGLSAHTHVELPYYSK GLSAHTHVELPYYSKFILIAAYLASYNPAR K G L S K F 1 0 0 0 0 0 1 1 2 0 2 1 0 0 1 2 1 0 2 1 0 0 15 0 1700.8522 Q9UDM8;A8K8C0;A4D0P7;O43913;Q53FC8;B4DXT8 Q9UDM8 293 307 ORC5L;ORC5 Origin recognition complex subunit 5 yes no 3 0.047666 15.525 1 0.18785 0.22847 NaN 1 Median 0.18785 0.22847 NaN 1 0 Median NaN NaN NaN 0 0 Median 21549000 18193000 3355700 21549000 18193000 3355700 0 0 0 4470 543 4573 15879 24012 24012 1 GLSASYLEPDRYDEEEEGEESISLAAIK RESQQRRMREKQHQRGLSASYLEPDRYDEE EEEEGEESISLAAIKNRYKGGIREERARIY R G L I K N 3 1 0 2 0 0 7 2 0 2 3 1 0 0 1 4 0 0 2 0 0 0 28 1 3099.4408 B4DNM0;Q8WVC0 B4DNM0 542 569 LEO1 RNA polymerase-associated protein LEO1 yes no 3 1.5799E-78 185.62 4 0.65111 0.86046 9.5334 4 Median 0.65111 0.86046 9.5334 4 0 Median NaN NaN NaN 0 0 Median 177000000 102680000 74319000 177000000 102680000 74319000 0 0 0 4471 838 4574 15880;15881;15882;15883 24013;24014;24015;24016;24017;24018;24019;24020;24021;24022 24019 10 GLSEAAGQTAQMLER EKNQSLVEENEKLSRGLSEAAGQTAQMLER GLSEAAGQTAQMLERIIWTEQANEKMNAKL R G L E R I 3 1 0 0 0 2 2 2 0 0 2 0 1 0 0 1 1 0 0 0 0 0 15 0 1560.7566 Q59HG1;O95239;Q6PKB2 Q59HG1 408 422 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 2.7229E-15 145.14 1 4 0.61969 0.97686 11.562 5 Median 0.55843 0.7707 NaN 1 0 Median 0.63126 0.99395 2.6857 4 0 Median 137720000 85568000 52149000 5871200 4026500 1844700 131850000 81541000 50304000 4472 1216 4575;4576 15884;15885;15886;15887;15888 24023;24024;24025;24026;24027;24028;24029;24030 24029 454 8 GLSEDTTEETLK SPNAGSQPSKTLFVKGLSEDTTEETLKESF FVKGLSEDTTEETLKESFDGSVRARIVTDR K G L L K E 0 0 0 1 0 0 3 1 0 0 2 1 0 0 0 1 3 0 0 0 0 0 12 0 1321.6249 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99;Q9BQ02;H7BY16 B3KTP9 501 512 NCL Nucleolin yes no 2 5.4202E-16 173.37 4 2 0.83647 1.1458 7.2247 6 Median 0.85653 1.1139 4.1166 4 0 Median 0.7892 1.2598 1.5283 2 0 Median 419870000 223380000 196490000 286720000 147790000 138930000 133150000 75597000 57551000 4473 119 4577 15889;15890;15891;15892;15893;15894 24031;24032;24033;24034;24035;24036;24037;24038;24039;24040;24041;24042;24043 24037 13 GLSEDVSISK PHLAREFMIKTRRRKGLSEDVSISKFFDDP TRRRKGLSEDVSISKFFDDPMLLELAKQDV K G L S K F 0 0 0 1 0 0 1 1 0 1 1 1 0 0 0 3 0 0 0 1 0 0 10 0 1033.5292 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;K7EP67 B4DZB1 893 902 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.0012639 109.48 3 1 0.5934 0.74739 4.7775 2 Median 0.5934 0.74739 4.7775 2 0 Median NaN NaN NaN 0 0 Median 32544000 16918000 15626000 27985000 16918000 11067000 4559100 0 4559100 4474 654 4578 15895;15896;15897;15898 24044;24045;24046;24047;24048;24049;24050 24045 7 GLSEKLPEK MQIEHIIENIVAVTKGLSEKLPEKWESVKL IVAVTKGLSEKLPEKWESVKLLFVKTEKSA K G L E K W 0 0 0 0 0 0 2 1 0 0 2 2 0 0 1 1 0 0 0 0 0 0 9 1 999.56006 O76021;Q32Q62;A0PJ87;I3L3U9 O76021 236 244 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 0.0022224 93.598 2 1 0.48784 0.66284 67.905 2 Median 0.86038 1.0714 NaN 1 0 Median 0.27661 0.41009 NaN 1 0 Median 29084000 12583000 16501000 25186000 9629800 15556000 3898300 2953500 944780 4475 1210 4579 15899;15900;15901 24051;24052;24053;24054 24053 4 GLSFLEVK SLTQKVQAGAYPTEKGLSFLEVKDQLLLMY GAYPTEKGLSFLEVKDQLLLMYLMDLTHLI K G L V K D 0 0 0 0 0 0 1 1 0 0 2 1 0 1 0 1 0 0 0 1 0 0 8 0 891.50657 Q8NEJ9;H0YJ17;G3V4G1 Q8NEJ9 49 56 NGDN Neuroguidin yes no 2 0.019156 58.917 2 0.85987 1.087 0.55925 2 Median 0.85987 1.087 0.55925 2 0 Median NaN NaN NaN 0 0 Median 19773000 10220000 9553100 19773000 10220000 9553100 0 0 0 4476 1654 4580 15902;15903 24055;24056;24057 24056 3 GLSGAQDPFPGPAPVPVEVVQK VPKKPREWKNPESQRGLSGAQDPFPGPAPV PFPGPAPVPVEVVQKFCRIDKSRKLPHSKA R G L Q K F 2 0 0 1 0 2 1 3 0 0 1 1 0 1 5 1 0 0 0 4 0 0 22 0 2188.1528 B0UZZ8;B4DNI0;B4DP15;A8K9A1;A8K806;A0A140T9L0;A0A0G2JJL1 B0UZZ8 90 111 C6orf11 yes no 2 1.365E-38 166.48 4 2 0.99334 1.2454 6.282 6 Median 0.99844 1.2454 4.1622 4 0 Median 0.74617 1.1921 10.395 2 0 Median 215110000 112670000 102430000 125720000 63711000 62008000 89386000 48961000 40425000 4477 668 4581 15904;15905;15906;15907;15908;15909 24058;24059;24060;24061;24062;24063;24064;24065;24066;24067;24068;24069;24070 24060 13 GLSIEQLTTLAEK VAEVLSWQFSSTTKRGLSIEQLTTLAEKLL KRGLSIEQLTTLAEKLLGPGVNYSGCQITW R G L E K L 1 0 0 0 0 1 2 1 0 1 3 1 0 0 0 1 2 0 0 0 0 0 13 0 1401.7715 G8JLH9;B4DNP0;B7ZA24;B4DVR6;B5BTZ6;P40763 G8JLH9 421 433 STAT3 Signal transducer and activator of transcription;Signal transducer and activator of transcription 3 yes no 2 0.011074 88.596 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 335740 335740 0 335740 335740 0 0 0 0 4478 840 4582 15910 24071 24071 1 GLSPAQADSQFLENAK KELEEKVAELHKTHRGLSPAQADSQFLENA LSPAQADSQFLENAKRLSMYGVDLHHAKDS R G L A K R 3 0 1 1 0 2 1 1 0 0 2 1 0 1 1 2 0 0 0 0 0 0 16 0 1674.8213 Q59FD8;E9PII3;E9PK52;E9PHY5;O43491;I6L9B1 Q59FD8 387 402 EPB41L2 Band 4.1-like protein 2 yes no 2 0.0014029 91.093 1 0.50651 0.64327 NaN 1 Median 0.50651 0.64327 NaN 1 0 Median NaN NaN NaN 0 0 Median 1642100 1088200 553970 1642100 1088200 553970 0 0 0 4479 1030 4583 15911 24072 24072 1 GLSQNQQIPQNSVTPR KEISEASENIYSDVRGLSQNQQIPQNSVTP LSQNQQIPQNSVTPRRGRRKKEVNQDILEN R G L P R R 0 1 2 0 0 4 0 1 0 1 1 0 0 0 2 2 1 0 0 1 0 0 16 0 1765.9071 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1795 1810 AHCTF1 Protein ELYS yes no 2 2.9746E-98 267.37 4 1 0.69638 0.92896 6.2096 5 Median 0.71407 0.9661 6.4488 4 0 Median 0.57145 0.90991 NaN 1 0 Median 145200000 85778000 59426000 93769000 53809000 39960000 51435000 31969000 19466000 4480 1670 4584 15912;15913;15914;15915;15916 24073;24074;24075;24076;24077;24078;24079;24080;24081;24082;24083 24077 11 GLSQSALPYR ______________________________ HAPGKGLSQSALPYRRSVPTWLKLTSDDVK K G L Y R R 1 1 0 0 0 1 0 1 0 0 2 0 0 0 1 2 0 0 1 0 0 0 10 0 1090.5771 P62277;J3KMX5;E9PS50 P62277 10 19 RPS13 40S ribosomal protein S13 yes no 2 3.318E-22 172.15 3 2 0.80028 1.1841 4.5771 5 Median 0.86003 1.171 4.5938 3 0 Median 0.77172 1.2118 2.2939 2 0 Median 197240000 108120000 89123000 135860000 73376000 62485000 61383000 34744000 26638000 4481 1403 4585 15917;15918;15919;15920;15921 24084;24085;24086;24087;24088;24089;24090;24091;24092;24093;24094;24095;24096 24091 13 GLSQSALPYRR ______________________________ APGKGLSQSALPYRRSVPTWLKLTSDDVKE K G L R R S 1 2 0 0 0 1 0 1 0 0 2 0 0 0 1 2 0 0 1 0 0 0 11 1 1246.6782 P62277;J3KMX5;E9PS50 P62277 10 20 RPS13 40S ribosomal protein S13 yes no 2;3 0.00086338 99.442 6 0.80758 1.1021 7.2607 5 Median 0.80758 1.1021 7.2607 5 0 Median NaN NaN NaN 0 0 Median 155310000 75715000 79600000 155310000 75715000 79600000 0 0 0 4482 1403 4586 15922;15923;15924;15925;15926;15927 24097;24098;24099;24100;24101;24102;24103;24104;24105 24102 9 GLSSLLCNFTK AVREPKLPVLAGCLKGLSSLLCNFTKSMEE GCLKGLSSLLCNFTKSMEEDPQTSREIFNF K G L T K S 0 0 1 0 1 0 0 1 0 0 3 1 0 1 0 2 1 0 0 0 0 0 11 0 1238.6329 P78527;B4DL41 P78527 226 236 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.025624 40.715 1 0.44182 0.56001 NaN 1 Median 0.44182 0.56001 NaN 1 0 Median NaN NaN NaN 0 0 Median 12295000 8231000 4063700 12295000 8231000 4063700 0 0 0 4483 1427 4587 15928 24106 24106 1 GLSSLLYGSIPK VRQTVRSHGVLGLYRGLSSLLYGSIPKAAV LYRGLSSLLYGSIPKAAVRFGMFEFLSNHM R G L P K A 0 0 0 0 0 0 0 2 0 1 3 1 0 0 1 3 0 0 1 0 0 0 12 0 1233.6969 Q6LAP8;D9HTE9;P53007 Q6LAP8 93 104 SLC25A1 Tricarboxylate transport protein, mitochondrial yes no 2 0.00022423 85.807 3 1.1529 1.4721 18.011 3 Plateau 1.1529 1.4721 18.011 3 0 Plateau NaN NaN NaN 0 0 Median 8792200 4547800 4244400 8792200 4547800 4244400 0 0 0 4484 999 4588 15929;15930;15931 24107;24108;24109;24110;24111 24111 5 GLTDLSACK EILRGVRLHFHNLVKGLTDLSACKAQLGLG FHNLVKGLTDLSACKAQLGLGHSYSRAKVK K G L C K A 1 0 0 1 1 0 0 1 0 0 2 1 0 0 0 1 1 0 0 0 0 0 9 0 963.46953 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 135 143 NOP56 Nucleolar protein 56 yes no 1;2 0.005103 98.458 5 0.73418 0.92632 16.214 4 Median 0.73418 0.92632 16.214 4 0 Median NaN NaN NaN 0 0 Median 141420000 87103000 54318000 141420000 87103000 54318000 0 0 0 4485 647 4589 15932;15933;15934;15935;15936 24112;24113;24114;24115;24116;24117 24114 6 GLTPSQIGVILR TSDDVKEQIYKLAKKGLTPSQIGVILRDSH AKKGLTPSQIGVILRDSHGVAQVRFVTGNK K G L L R D 0 1 0 0 0 1 0 2 0 2 2 0 0 0 1 1 1 0 0 1 0 0 12 0 1252.7503 P62277;J3KMX5 P62277 44 55 RPS13 40S ribosomal protein S13 yes no 2 4.0443E-08 119.75 4 2 0.88062 1.2387 7.49 6 Median 0.89175 1.2274 4.3185 4 0 Median 0.83067 1.3603 6.0796 2 0 Median 1117500000 596810000 520640000 894320000 472200000 422120000 223130000 124610000 98525000 4486 1403 4590 15937;15938;15939;15940;15941;15942 24118;24119;24120;24121;24122;24123;24124;24125;24126;24127;24128 24125 11 GLTQIQSR PDACPTMPLLAMLLRGLTQIQSRILGPGRK LLAMLLRGLTQIQSRILGPGRKCCALANLA R G L S R I 0 1 0 0 0 2 0 1 0 1 1 0 0 0 0 1 1 0 0 0 0 0 8 0 901.49813 Q9HBB9;Q8WUM5;Q9HC39;I3L2C7;P57678;I3L4A4;I3L399 Q9HBB9 211 218 GEMIN4 Gem-associated protein 4 yes no 2 0.017654 60.682 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2104500 2104500 0 2104500 2104500 0 0 0 0 4487 1667 4591 15943 24129 24129 1 GLTVDSILQTDDATLGK KDQVTAGAMQRLRARGLTVDSILQTDDATL TVDSILQTDDATLGKLIYPVGFWRSKVKYI R G L G K L 1 0 0 3 0 1 0 2 0 1 3 1 0 0 0 1 3 0 0 1 0 0 17 0 1745.9047 H3BRL9;E5KTI5;P78549 H3BRL9 124 140 NTHL1 Endonuclease III-like protein 1 yes no 2 1.9252E-34 190.35 3 0.61515 0.78461 21.737 2 Median 0.61515 0.78461 21.737 2 0 Median NaN NaN NaN 0 0 Median 13507000 6638300 6868500 13507000 6638300 6868500 0 0 0 4488 1003 4592 15944;15945;15946 24130;24131;24132 24131 3 GLVASLISVK AYKDPEKNWNRNCVKGLVASLISVKDTSAT RNCVKGLVASLISVKDTSATTALELVAGER K G L V K D 1 0 0 0 0 0 0 1 0 1 2 1 0 0 0 2 0 0 0 2 0 0 10 0 985.61718 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 524 533 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 4.0454E-05 123.98 4 2 0.69495 0.93586 11.76 6 Median 0.71752 0.90849 12.136 4 0 Median 0.63526 1.0074 10.199 2 0 Median 380480000 223470000 157010000 200510000 112830000 87673000 179970000 110630000 69337000 4489 50 4593 15947;15948;15949;15950;15951;15952 24133;24134;24135;24136;24137;24138;24139;24140;24141;24142 24137 10 GLVAVITGGASGLGLATAER ______________________________ ITGGASGLGLATAERLVGQGASAVLLDLPN K G L E R L 4 1 0 0 0 0 1 5 0 1 3 0 0 0 0 1 2 0 0 2 0 0 20 0 1812.0105 A0A0S2Z410;Q99714;Q5H928;A0A0S2Z434 A0A0S2Z410 10 29 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2 1.8947E-46 178.23 4 1 0.29816 0.40252 4.3283 3 Plateau 0.29816 0.40252 4.3283 3 0 Plateau NaN NaN NaN 0 0 Median 108160000 70267000 37894000 87002000 70267000 16734000 21160000 0 21160000 4490 458 4594 15953;15954;15955;15956;15957 24143;24144;24145;24146;24147;24148;24149 24146 7 GLVDRPLALR PFSGSQIPLFQAMKKGLVDRPLALRLLDAQ QAMKKGLVDRPLALRLLDAQLATGGLVCPA K G L L R L 1 2 0 1 0 0 0 1 0 0 3 0 0 0 1 0 0 0 0 1 0 0 10 1 1108.6717 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 384 393 EPPK1 Epiplakin no no 3 0.0017968 61.78 1 0.5515 0.73019 NaN 1 Median 0.5515 0.73019 NaN 1 0 Median NaN NaN NaN 0 0 Median 6706500 4018200 2688300 6706500 4018200 2688300 0 0 0 4491 373;1386 4595 15958 24150;24151 24151 2 GLVGNPLPSVR VNALLPTETFIPVIRGLVGNPLPSVRRKAL PVIRGLVGNPLPSVRRKALDLLNNKLQQNI R G L V R R 0 1 1 0 0 0 0 2 0 0 2 0 0 0 2 1 0 0 0 2 0 0 11 0 1107.64 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8;Q8N7L7 B2RWN5 1606 1616 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.00020805 117.81 2 2 0.7303 1.0786 3.1669 4 Median 0.80747 1.0949 2.3269 2 0 Median 0.66074 1.0551 3.3177 2 0 Median 136940000 79227000 57713000 56210000 29193000 27018000 80729000 50034000 30695000 4492 748 4596 15959;15960;15961;15962 24152;24153;24154;24155;24156 24153 5 GLVGPELHDR PVKGERLTVDEAVRKGLVGPELHDRLLSAE EAVRKGLVGPELHDRLLSAERAVTGYRDPY K G L D R L 0 1 0 1 0 0 1 2 1 0 2 0 0 0 1 0 0 0 0 1 0 0 10 0 1091.5724 Q15149;D3DWL0;Q96IE3 Q15149 3888 3897 PLEC;PLEC1 Plectin yes no 2;3 0.0067693 57.859 2 0.64569 0.8595 10.451 2 Median 0.64569 0.8595 10.451 2 0 Median NaN NaN NaN 0 0 Median 37909000 22738000 15171000 37909000 22738000 15171000 0 0 0 4493 1507 4597 15963;15964 24157;24158;24159 24159 3 GLVLGPIHK GLKGRLDYLSSLKVKGLVLGPIHKNQKDDV SSLKVKGLVLGPIHKNQKDDVAQTDLLQID K G L H K N 0 0 0 0 0 0 0 2 1 1 2 1 0 0 1 0 0 0 0 1 0 0 9 0 932.58074 B4E2Z3;F5GZS6;J3KPF3;P08195;A0A024R599;H0YFS2;F5H0E2 B4E2Z3 139 147 SLC3A2 4F2 cell-surface antigen heavy chain yes no 2 0.012957 58.981 2 5.0093 6.8475 NaN 1 Median NaN NaN NaN 0 0 Median 5.0093 6.8475 NaN 1 0 Median 6582800 868350 5714500 0 0 0 6582800 868350 5714500 4494 889 4598 15965;15966 24160;24161 24160 2 GLVLIAFSQYLQQCPFDEHVK EIAHRFKDLGEEHFKGLVLIAFSQYLQQCP FSQYLQQCPFDEHVKLVNELTEFAKTCVAD K G L V K L 1 0 0 1 1 3 1 1 1 1 3 1 0 2 1 1 0 0 1 2 0 0 21 0 2491.257 CON__P02769 CON__P02769 45 65 yes yes 3 0.00071608 77.391 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4809400 4809400 0 4809400 4809400 0 0 0 0 + 4495 952 4599 15967;15968 24162;24163;24164 24162 3 GLVLLRPPASLQYR TGLLDMVSSQPAAQRGLVLLRPPASLQYRF RGLVLLRPPASLQYRFARIAIEV_______ R G L Y R F 1 2 0 0 0 1 0 1 0 0 4 0 0 0 2 1 0 0 1 1 0 0 14 1 1581.9355 Q96F88;Q99575 Q96F88 1003 1016 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 3 0.0064116 32.275 1 2 0.35783 0.51665 13.074 3 Plateau 0.30508 0.39886 NaN 1 0 Median 0.34096 0.49223 6.8484 2 0 Median 30451000 22617000 7833600 9537400 6587600 2949800 20913000 16029000 4883800 4496 1685 4600 15969;15970;15971 24165;24166;24167 24165 3 GLVLVPTK LHRKATGPVVEQAVRGLVLVPTKELARQAQ VVEQAVRGLVLVPTKELARQAQSMIQQLAT R G L T K E 0 0 0 0 0 0 0 1 0 0 2 1 0 0 1 0 1 0 0 2 0 0 8 0 825.53239 Q9NY93;Q53HB9;H7C3E9;G3V0G3;F8WDT8 Q9NY93 85 92 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 0.0062595 77.058 3 1.1204 1.3759 NaN 1 Median 1.1204 1.3759 NaN 1 0 Median NaN NaN NaN 0 0 Median 28979000 16983000 11995000 28979000 16983000 11995000 0 0 0 4497 1768 4601 15972;15973;15974 24168;24169;24170 24169 3 GLVYETSVLDPDEGIR ______________________________ LVYETSVLDPDEGIRFRGFSIPECQKLLPK K G L I R F 0 1 0 2 0 0 2 2 0 1 2 0 0 0 1 1 1 0 1 2 0 0 16 0 1761.8785 A0A0C4DGI3;B3KTN4;B4DJV2;A0A024RB75;O75390;F8W642;F8VZK9;F8VX07;F8VRP1;F8VX68;F8VPF9;F8VPA1;F8VTT8;F8W1S4;F8W4S1;H0YH82;B7Z1E1 A0A0C4DGI3 11 26 CS Citrate synthase;Citrate synthase, mitochondrial yes no 2 0.003723 81.431 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4454800 4454800 0 4454800 4454800 0 0 0 0 4498 262 4602 15975;15976 24171;24172 24172 2 GLYCYELDEK DAFTDLKNGSLFAFRGLYCYELDEKAVRPG LFAFRGLYCYELDEKAVRPGYPKLIRDVWG R G L E K A 0 0 0 1 1 0 2 1 0 0 2 1 0 0 0 0 0 0 2 0 0 0 10 0 1288.5646 CON__Q3ZBS7 CON__Q3ZBS7 173 182 yes yes 2 0.0054067 88.37 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35937000 35937000 0 35937000 35937000 0 0 0 0 + 4499 970 4603 15977;15978;15979;15980 24173;24174;24175;24176 24175 4 GLYEDCSSCFQAMGK LSNDGMLVILAAGDRGLYEDCSSCFQAMGK GLYEDCSSCFQAMGKTSFFLGEVGNAAKMM R G L G K T 1 0 0 1 2 1 1 2 0 0 1 1 1 1 0 2 0 0 1 0 0 0 15 0 1751.6953 K7EMM8;D3DUE6;Q49A26;D3DUE7 Q49A26 379 393 GLYR1;N-PAC Putative oxidoreductase GLYR1 no no 2 0.00098358 43.544 1 0.4747 0.69966 NaN 1 Median NaN NaN NaN 0 0 Median 0.4747 0.69966 NaN 1 0 Median 8828600 4608900 4219700 0 0 0 8828600 4608900 4219700 4500 982;1533 4604 15981 24177 24177 356 1 GLYSDTELQQCLAAAQAASQHVFR ALDSVERKLLMSSTKGLYSDTELQQCLAAA QCLAAAQAASQHVFRFYRESLQRRYSKS__ K G L F R F 5 1 0 1 1 4 1 1 1 0 3 0 0 1 0 2 1 0 1 1 0 0 24 0 2663.2762 Q9NQT4;M0R050 Q9NQT4 199 222 EXOSC5 Exosome complex component RRP46 yes no 3 9.6326E-41 161.04 4 0.62356 0.83566 9.625 4 Median 0.62356 0.83566 9.625 4 0 Median NaN NaN NaN 0 0 Median 40660000 25392000 15268000 40660000 25392000 15268000 0 0 0 4501 1753 4605 15982;15983;15984;15985 24178;24179;24180;24181;24182 24179 5 GMMAGPMAAFK KDEKDLTIPESSTVKGMMAGPMAAFKWQPT STVKGMMAGPMAAFKWQPTASEPVKDADPH K G M F K W 3 0 0 0 0 0 0 2 0 0 0 1 3 1 1 0 0 0 0 0 0 0 11 0 1110.5024 K7EMM8;D3DUE6;K7EQB2;Q49A26;D3DUE7;K7EPU6 Q49A26 179 189 GLYR1;N-PAC Putative oxidoreductase GLYR1 no no 2 0.001014 59.245 1 0.5446 0.82358 NaN 1 Median NaN NaN NaN 0 0 Median 0.5446 0.82358 NaN 1 0 Median 15976000 10590000 5386300 0 0 0 15976000 10590000 5386300 4502 982;1533;1151 4606 15986 24183 24183 357;358;359 1 GMTSESDSIGLTPGEK KLSDGIGVMLPQVLKGMTSESDSIGLTPGE MTSESDSIGLTPGEKSELALSALGGCVFYL K G M E K S 0 0 0 1 0 0 2 3 0 1 1 1 1 0 1 3 2 0 0 0 0 0 16 0 1607.7349 P52701;A0A087WWJ1;Q1L838 P52701 661 676 MSH6;GTBP DNA mismatch repair protein Msh6 yes no 2 0.0041263 48.659 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1495800 0 1495800 0 0 0 1495800 0 1495800 4503 1365 4607 15987 24184 24184 594 1 GMVFSINLGFSDLTNK GSLVINSKNQYKLKKGMVFSINLGFSDLTN MVFSINLGFSDLTNKEGKKPEEKTYALFIG K G M N K E 0 0 2 1 0 0 0 2 0 1 2 1 1 2 0 2 1 0 0 1 0 0 16 0 1741.8709 Q9Y5B9;Q0VGA3 Q9Y5B9 374 389 SUPT16H FACT complex subunit SPT16 yes no 2 2.1036E-13 142.76 5 0.78638 0.99304 24.527 5 Median 0.78638 0.99304 24.527 5 0 Median NaN NaN NaN 0 0 Median 42987000 24759000 18228000 42987000 24759000 18228000 0 0 0 4504 1829 4608;4609 15988;15989;15990;15991;15992 24185;24186;24187;24188;24189;24190;24191;24192;24193 24186 854 9 GNAIYNLLPDIISR IAALAKNFFNELSHKGNAIYNLLPDIISRL KGNAIYNLLPDIISRLSDPELGVEEEPFHT K G N S R L 1 1 2 1 0 0 0 1 0 3 2 0 0 0 1 1 0 0 1 0 0 0 14 0 1557.8515 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1160 1173 NCAPD2 Condensin complex subunit 1 yes no 2 3.9955E-27 185.3 4 1 0.68103 0.9352 2.417 4 Median 0.68103 0.9352 2.417 4 0 Median NaN NaN NaN 0 0 Median 376930000 235130000 141800000 344680000 202880000 141800000 32247000 32247000 0 4505 757 4610 15993;15994;15995;15996;15997 24194;24195;24196;24197;24198;24199;24200;24201;24202;24203;24204 24198 11 GNDGTIMIR G N I R 0 1 1 1 0 0 0 2 0 2 0 0 1 0 0 0 1 0 0 0 0 0 9 0 975.48076 REV__Q8N3X5 yes no 2 0.01632 73.26 1 0.74074 1.0088 NaN 1 Median 0.74074 1.0088 NaN 1 0 Median NaN NaN NaN 0 0 Median 64818000 38082000 26737000 64818000 38082000 26737000 0 0 0 + 4506 1853 4611 15998 24205 24205 868 1 GNDTFVTLDEILR ATDIHLGFMEKDAVRGNDTFVTLDEILRLA VRGNDTFVTLDEILRLAQENEVDFILLGGD R G N L R L 0 1 1 2 0 0 1 1 0 1 2 0 0 1 0 0 2 0 0 1 0 0 13 0 1491.7569 Q9BS79;F5GXT0;Q05D78;F8W7U8;A0A024R395;P49959;F5H742;A0A0S2Z438;F5H256 Q9BS79 33 45 MRE11A Double-strand break repair protein MRE11A yes no 2 1.67E-20 189.57 5 0.41673 0.57145 24.009 3 Median 0.41673 0.57145 24.009 3 0 Median NaN NaN NaN 0 0 Median 13946000 8370300 5575600 13946000 8370300 5575600 0 0 0 4507 99 4612 15999;16000;16001;16002;16003 24206;24207;24208;24209;24210;24211;24212 24209 7 GNEEAQIFRPLK VDQPIVKTATITEPRGNEEAQIFRPLKFNT EPRGNEEAQIFRPLKFNTTSVIKIAVEPVN R G N L K F 1 1 1 0 0 1 2 1 0 1 1 1 0 1 1 0 0 0 0 0 0 0 12 1 1400.7412 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 521 532 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 3.5939E-15 169.99 3 1 0.54945 0.72581 56.216 4 Median 0.6055 0.78684 13.325 3 0 Plateau 1.3635 2.0573 NaN 1 0 Median 40956000 24741000 16215000 35830000 22425000 13404000 5126300 2315300 2811000 4508 654 4613 16004;16005;16006;16007 24213;24214;24215;24216;24217 24215 5 GNEFFCEVDEDYIQDK SSEEVSWISWFCGLRGNEFFCEVDEDYIQD NEFFCEVDEDYIQDKFNLTGLNEQVPHYRQ R G N D K F 0 0 1 3 1 1 3 1 0 1 0 1 0 2 0 0 0 0 1 1 0 0 16 0 2006.8204 N0E4C7;Q5SRQ6;P67870;N0E466;Q5SRQ3;N0E472;A0A0G2JM12;N0E650;N0E638;N0E6J1;B4DUJ4;N0E644;A0A0G2JM58 N0E4C7 18 33 CSNK2B;CSNK2B-LY6G5B-1181;CSNK2B-LY6G5B--991;CSNK2B-LY6G5B-1072;CSNK2B-LY6G5B-560;CSNK2B-LY6G5B-562 Casein kinase II subunit beta yes no 2 2.7759E-42 196.11 4 0.60737 0.77915 3.9215 4 Median 0.60737 0.77915 3.9215 4 0 Median NaN NaN NaN 0 0 Median 32119000 19974000 12145000 32119000 19974000 12145000 0 0 0 4509 1162 4614 16008;16009;16010;16011 24218;24219;24220;24221;24222 24220 5 GNEIVLSAGSTPR VGEPTYDAEFQHFLRGNEIVLSAGSTPRIQ LRGNEIVLSAGSTPRIQGLTVEQAEAVVRL R G N P R I 1 1 1 0 0 0 1 2 0 1 1 0 0 0 1 2 1 0 0 1 0 0 13 0 1299.6783 Q14204 Q14204 3911 3923 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.010116 57.836 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2134500 2134500 0 2134500 2134500 0 0 0 0 4510 1483 4615 16012;16013 24223;24224 24224 2 GNENANGAPAITLLIR SKKKVEFLKQIANTKGNENANGAPAITLLI NENANGAPAITLLIREKNESNKSSFDKMIE K G N I R E 3 1 3 0 0 0 1 2 0 2 2 0 0 0 1 0 1 0 0 0 0 0 16 0 1622.874 Q9Y5B9;Q0VGA3 Q9Y5B9 93 108 SUPT16H FACT complex subunit SPT16 yes no 2 7.0464E-44 177.83 4 2 0.75951 1.0604 7.8994 6 Median 0.79851 1.1008 9.0171 4 0 Median 0.63436 1.025 1.2708 2 0 Median 309770000 164180000 145590000 179310000 87917000 91392000 130460000 76263000 54201000 4511 1829 4616 16014;16015;16016;16017;16018;16019 24225;24226;24227;24228;24229;24230;24231;24232;24233 24229 9 GNFCPLCDK HDFSLCHDCAKLFAKGNFCPLCDKCYDDDD AKLFAKGNFCPLCDKCYDDDDYESKMMQCG K G N D K C 0 0 1 1 2 0 0 1 0 0 1 1 0 1 1 0 0 0 0 0 0 0 9 0 1109.4634 Q03164;H7BYJ6;Q8NI11 Q03164 1566 1574 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 0.011716 60.91 1 1.0066 1.2615 NaN 1 Median 1.0066 1.2615 NaN 1 0 Median NaN NaN NaN 0 0 Median 7691700 4867900 2823800 7691700 4867900 2823800 0 0 0 4512 1438 4617 16020 24234 24234 1 GNFGGSFAGSFGGAGGHAPGVAR GGGGASFDRAIEMERGNFGGSFAGSFGGAG GSFGGAGGHAPGVARKACQIFVRNLPFDFT R G N A R K 4 1 1 0 0 0 0 9 1 0 0 0 0 3 1 2 0 0 0 1 0 0 23 0 2033.9456 P52272;A0A087X0X3;Q59ES8;Q7KYM9;Q6P2D7;M0R2I7;M0QY96 P52272 628 650 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M yes no 2;3 5.5228E-80 228.9 8 4 0.37135 0.50895 105.19 11 Median 0.35421 0.49292 15.728 7 0 Median 2.481 3.8619 8.3546 4 0 Median 569400000 334050000 235350000 387060000 280070000 106990000 182340000 53977000 128360000 4513 1363 4618 16021;16022;16023;16024;16025;16026;16027;16028;16029;16030;16031;16032 24235;24236;24237;24238;24239;24240;24241;24242;24243;24244;24245;24246;24247;24248;24249;24250;24251;24252;24253 24237 19 GNFLEIK RYAILNEPFKGEMNRGNFLEIKNKFLARRF PFKGEMNRGNFLEIKNKFLARRFKLLEQAL R G N I K N 0 0 1 0 0 0 1 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 7 0 819.44905 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 1746 1752 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 1;2 0.017492 133.81 2 0.84093 1.0539 12.599 2 Median 0.84093 1.0539 12.599 2 0 Median NaN NaN NaN 0 0 Median 23725000 12864000 10862000 23725000 12864000 10862000 0 0 0 4514 428 4619 16033;16034 24254;24255 24254 2 GNIAQMYHAPGK SVSFSPDGRKFVVTKGNIAQMYHAPGKKRE VTKGNIAQMYHAPGKKREFNAFVLDKTYFG K G N G K K 2 0 1 0 0 1 0 2 1 1 0 1 1 0 1 0 0 0 1 0 0 0 12 0 1285.6237 Q15269;A0A0B4J2E5 Q15269 116 127 PWP2 Periodic tryptophan protein 2 homolog yes no 2 0.00034871 70.1 2 0.50645 0.67145 4.3576 2 Median NaN NaN NaN 0 0 Median 0.50645 0.67145 4.3576 2 0 Median 4570100 3065100 1505000 0 0 0 4570100 3065100 1505000 4515 1508 4620 16035;16036 24256;24257 24257 691 2 GNIIISTPEK LLTGETSTDLKLLGKGNIIISTPEKWDILS KLLGKGNIIISTPEKWDILSRRWKQRKNVQ K G N E K W 0 0 1 0 0 0 1 1 0 3 0 1 0 0 1 1 1 0 0 0 0 0 10 0 1070.5972 O75643;A4FU77 O75643 1422 1431 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.04479 66.568 1 0.59959 0.76043 NaN 1 Median 0.59959 0.76043 NaN 1 0 Median NaN NaN NaN 0 0 Median 6080800 3261800 2819000 6080800 3261800 2819000 0 0 0 4516 1206 4621 16037 24258 24258 1 GNILIPGLSQK LDPASGDLVIREDCRGNILIPGLSQKPISS EDCRGNILIPGLSQKPISSFADFERHFLPA R G N Q K P 0 0 1 0 0 1 0 2 0 2 2 1 0 0 1 1 0 0 0 0 0 0 11 0 1138.671 Q14807;A0A024R632;B7Z9T5;H3BRB3;H3BTH5 Q14807 203 213 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 0.013366 68.016 2 1 0.79936 1.0287 15.6 3 Median 0.80587 1.0429 1.9366 2 0 Median 0.55328 0.79678 NaN 1 0 Median 15275000 7955300 7319300 10284000 5155300 5128600 4990600 2799900 2190700 4517 1497 4622 16038;16039;16040 24259;24260;24261;24262;24263 24262 5 GNILIPGLSQKPISSFADFER LDPASGDLVIREDCRGNILIPGLSQKPISS GLSQKPISSFADFERHFLPASRNRTVGATR R G N E R H 1 1 1 1 0 1 1 2 0 3 2 1 0 2 2 3 0 0 0 0 0 0 21 1 2288.2165 Q14807;A0A024R632;B7Z9T5;H3BRB3;H3BTH5 Q14807 203 223 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 3 7.4852E-06 90.453 1 2 0.66132 1.0777 42.406 3 Median 0.97995 1.3243 NaN 1 0 Median 0.49616 0.79461 43.096 2 0 Median 34476000 21794000 12683000 4207300 1947600 2259700 30269000 19846000 10423000 4518 1497 4623 16041;16042;16043 24264;24265;24266;24267;24268 24265 5 GNIVFVTLR RYVASAVFGVIGSQKGNIVFVTLRGEKGRY VIGSQKGNIVFVTLRGEKGRYVAVPACEHV K G N L R G 0 1 1 0 0 0 0 1 0 1 1 0 0 1 0 0 1 0 0 2 0 0 9 0 1017.5971 Q5TDG3;Q9UNX4 Q5TDG3 24 32 WDR3 WD repeat-containing protein 3 yes no 2 0.0073184 95.815 3 0.84435 1.1261 6.189 3 Plateau 0.84435 1.1261 6.189 3 0 Plateau NaN NaN NaN 0 0 Median 37915000 18540000 19375000 37915000 18540000 19375000 0 0 0 4519 1576 4624 16044;16045;16046 24269;24270;24271;24272;24273 24271 5 GNIVFVTLRGEK RYVASAVFGVIGSQKGNIVFVTLRGEKGRY SQKGNIVFVTLRGEKGRYVAVPACEHVFIW K G N E K G 0 1 1 0 0 0 1 2 0 1 1 1 0 1 0 0 1 0 0 2 0 0 12 1 1331.7561 Q5TDG3;Q9UNX4 Q5TDG3 24 35 WDR3 WD repeat-containing protein 3 yes no 2 0.0070584 59.067 1 0.55919 0.84249 NaN 1 Median NaN NaN NaN 0 0 Median 0.55919 0.84249 NaN 1 0 Median 7704800 4803200 2901600 0 0 0 7704800 4803200 2901600 4520 1576 4625 16047 24274;24275 24275 2 GNLEVLLFTIQSK NTYRTVEKPPKFTEKGNLEVLLFTIQSKMR EKGNLEVLLFTIQSKMRANNQKVYMPREGK K G N S K M 0 0 1 0 0 1 1 1 0 1 3 1 0 1 0 1 1 0 0 1 0 0 13 0 1460.8239 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;F8W6C1;O15020;A4QPE4 B2ZZ89 360 372 SPTBN1;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2 yes no 2 1.7132E-32 206.36 4 0.86151 1.094 32.367 4 Median 0.86151 1.094 32.367 4 0 Median NaN NaN NaN 0 0 Median 61306000 29289000 32017000 61306000 29289000 32017000 0 0 0 4521 346 4626 16048;16049;16050;16051 24276;24277;24278;24279;24280;24281;24282 24278 7 GNLGAGNGNLQGPR PPPSFHLGGPAVGPRGNLGAGNGNLQGPRH RGNLGAGNGNLQGPRHMQKGRVETSRVVHI R G N P R H 1 1 3 0 0 1 0 5 0 0 2 0 0 0 1 0 0 0 0 0 0 0 14 0 1323.6644 A0A0R4J2E8;A8MXP9;P43243;D6REM6;D6R991;H0Y8T4;Q5CZA7;B3KM87;B4DRS1;B4DF66;D6RBI2;D6RE02;D6RIA2;D6RAM9;D6RAY2 A0A0R4J2E8 374 387 MATR3;DKFZp686K0542 Matrin-3 yes no 2 1.4915E-09 98.048 1 0.3303 0.43414 NaN 1 Median 0.3303 0.43414 NaN 1 0 Median NaN NaN NaN 0 0 Median 8372600 4830400 3542100 8372600 4830400 3542100 0 0 0 4522 445 4627 16052 24283;24284 24284 2 GNLGVYQETR RLDRLSGLADQMVARGNLGVYQETRERLAM QMVARGNLGVYQETRERLAMRLKGLGCQTL R G N T R E 0 1 1 0 0 1 1 2 0 0 1 0 0 0 0 0 1 0 1 1 0 0 10 0 1135.5622 A0A024QZC1;O95400;Q5QTR6 A0A024QZC1 213 222 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 yes no 2 0.008892 62.823 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3391000 3391000 0 3391000 3391000 0 0 0 0 4523 8 4628 16053 24285 24285 1 GNLNFTCDGNSVISPVGNR FAYRFSNLLGTVYRRGNLNFTCDGNSVISP FTCDGNSVISPVGNRVTVFDLKNNKSDTLP R G N N R V 0 1 4 1 1 0 0 3 0 1 1 0 0 1 1 2 1 0 0 2 0 0 19 0 2019.9432 Q15269;C9J544 Q15269 18 36 PWP2 Periodic tryptophan protein 2 homolog yes no 2 2.5764E-43 182.72 6 1 0.83119 1.1746 18.73 6 Median 0.83572 1.1846 11.279 5 0 Median 0.58829 0.81733 NaN 1 0 Median 58325000 29343000 28982000 46948000 22023000 24925000 11377000 7320200 4056600 4524 1508 4629 16054;16055;16056;16057;16058;16059;16060 24286;24287;24288;24289;24290;24291;24292;24293;24294;24295;24296;24297;24298;24299;24300;24301 24292 16 GNLTPLTGR ASKAQRRKEKRQRVKGNLTPLTGRNYRQLL KRQRVKGNLTPLTGRNYRQLLERLQARQSR K G N G R N 0 1 1 0 0 0 0 2 0 0 2 0 0 0 1 0 2 0 0 0 0 0 9 0 927.51378 B3KNS8;O75683 B3KNS8 226 234 SURF6 Surfeit locus protein 6 yes no 2 0.0082168 66.351 1 0.89249 1.1931 NaN 1 Median 0.89249 1.1931 NaN 1 0 Median NaN NaN NaN 0 0 Median 25045000 12112000 12933000 25045000 12112000 12933000 0 0 0 4525 760 4630 16061 24302 24302 1 GNLYSFGCPEYGQLGHNSDGK KMACGAEFSMIMDCKGNLYSFGCPEYGQLG GCPEYGQLGHNSDGKFIARAQRIEYDCELV K G N G K F 0 0 2 1 1 1 1 5 1 0 2 1 0 1 1 2 0 0 2 0 0 0 21 0 2298.9964 A5PLK7;A0A024RAC5;Q9P258 A5PLK7 208 228 RCC2 Protein RCC2 yes no 3 0.00032154 47.688 2 0.72093 0.91181 90.236 2 Median 0.72093 0.91181 90.236 2 0 Median NaN NaN NaN 0 0 Median 10501000 6066500 4434400 10501000 6066500 4434400 0 0 0 4526 239 4631 16062;16063 24303;24304;24305 24305 3 GNSIIMLEALERV ATSGQQNNIGMVVIRGNSIIMLEALERV__ IRGNSIIMLEALERV_______________ R G N R V - 1 1 1 0 0 0 2 1 0 2 2 0 1 0 0 1 0 0 0 1 0 0 13 1 1443.7755 Q49AN9;F5H013;P62308;A8MWD9 Q49AN9 52 64 SNRPG;SNRPGP15 Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15 yes no 2 2.4479E-08 149.49 4 1 0.75929 1.0447 19.019 5 Median 0.76891 1.0461 19.319 4 0 Median 0.59104 0.85775 NaN 1 0 Median 30508000 18068000 12440000 16776000 9552800 7222800 13733000 8515500 5217100 4527 659 4632;4633 16064;16065;16066;16067;16068 24306;24307;24308;24309;24310;24311;24312;24313 24306 8 GNSLFFR IDCWCMLQKEGNMSRGNSLFFRKVPFGKTY QKEGNMSRGNSLFFRKVPFGKTYCCDLKML R G N F R K 0 1 1 0 0 0 0 1 0 0 1 0 0 2 0 1 0 0 0 0 0 0 7 0 839.42899 Q9Y6C9;Q53G34;B4DHQ0 Q9Y6C9 281 287 MTCH2 Mitochondrial carrier homolog 2 yes no 2 0.024935 69.383 1 0.39518 0.53722 NaN 1 Median 0.39518 0.53722 NaN 1 0 Median NaN NaN NaN 0 0 Median 6567700 4464300 2103400 6567700 4464300 2103400 0 0 0 4528 1833 4634 16069 24314 24314 1 GNSLQEILER VEVKKSQHKYVIGPKGNSLQEILERTGVSV VIGPKGNSLQEILERTGVSVEIPPSDSISE K G N E R T 0 1 1 0 0 1 2 1 0 1 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1157.6041 B2R5V9;A0A024R4E5;Q00341;B4DKR8;Q5HYC5;H7C0A4 B2R5V9 315 324 HDLBP;DKFZp686L08115 Vigilin yes no 2 0.0004831 82.749 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7668700 3425500 4243300 3425500 3425500 0 4243300 0 4243300 4529 122 4635 16070;16071;16072;16073 24315;24316;24317;24318;24319 24315 5 GNSLTLIDLPGHESLR SITDSCAVYRVNNNRGNSLTLIDLPGHESL NSLTLIDLPGHESLRLQFLERFKSSARAIV R G N L R L 0 1 1 1 0 0 1 2 1 1 4 0 0 0 1 2 1 0 0 0 0 0 16 0 1720.9108 Q549N5;Q9Y5M8 Q549N5 110 125 SRPRB Signal recognition particle receptor subunit beta yes no 2;3 0.00012399 65.179 1 2 3.84 5.585 5.4119 2 Median NaN NaN NaN 0 0 Median 3.84 5.585 5.4119 2 0 Median 15066000 4979000 10087000 1134900 1134900 0 13931000 3844100 10087000 4530 1545 4636 16074;16075;16076 24320;24321;24322 24320 3 GNSQLLLS SSRPPPAKRKKSQSRGNSQLLLS_______ RKKSQSRGNSQLLLS_______________ R G N L S - 0 0 1 0 0 1 0 1 0 0 3 0 0 0 0 2 0 0 0 0 0 0 8 0 830.44978 P46087 P46087 805 812 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 1 0.008576 76.035 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5215200 0 0 5215200 0 0 0 0 0 4531 1343 4637 16077 24323 24323 1 GNTAAYLLYAFTR LNDYIFSFDKMLDDRGNTAAYLLYAFTRIR DRGNTAAYLLYAFTRIRSIARLANIDEEML R G N T R I 3 1 1 0 0 0 0 1 0 0 2 0 0 1 0 0 2 0 2 0 0 0 13 0 1459.746 P54136;B4DXW6 P54136 528 540 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 2.2056E-07 132.32 4 1 0.51609 0.71497 10.448 2 Median 0.51609 0.71497 10.448 2 0 Median NaN NaN NaN 0 0 Median 13797000 4107100 9690100 9578800 4107100 5471700 4218400 0 4218400 4532 1373 4638 16078;16079;16080;16081;16082 24324;24325;24326;24327;24328 24326 4 GNTSGSHIVNHLVR VVYCNTSKKWFCNGRGNTSGSHIVNHLVRA RGNTSGSHIVNHLVRAKCKEVTLHKDGPLG R G N V R A 0 1 2 0 0 0 0 2 2 1 1 0 0 0 0 2 1 0 0 2 0 0 14 0 1489.775 A0A024R7L5;A0A024R7L8;Q92900 A0A024R7L5 149 162 UPF1 Regulator of nonsense transcripts 1 yes no 3 0.00059751 41.227 1 0.49855 0.65932 NaN 1 Median 0.49855 0.65932 NaN 1 0 Median NaN NaN NaN 0 0 Median 10219000 6071600 4147100 10219000 6071600 4147100 0 0 0 4533 180 4639 16083 24329;24330 24330 2 GNVGFVFTK LENNPALEKLLPHIRGNVGFVFTKEDLTEI LLPHIRGNVGFVFTKEDLTEIRDMLLANKV R G N T K E 0 0 1 0 0 0 0 2 0 0 0 1 0 2 0 0 1 0 0 2 0 0 9 0 967.51272 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VWS0;Q53HK9;F8VW21;F8VU65;F8VZS0;Q6NSF2;G3V210;F8VQY6;F8VPE8;F8VRK7;F8VS58;F8VWV4 Q53HW2 84 92 RPLP0 60S acidic ribosomal protein P0 yes no 2 0.00097708 106.94 2 2 0.7954 1.1281 2.2589 4 Median 0.86332 1.1281 0.41688 2 0 Median 0.7268 1.1457 3.5707 2 0 Median 809070000 451140000 357940000 238960000 120910000 118050000 570110000 330230000 239880000 4534 281 4640 16084;16085;16086;16087 24331;24332;24333;24334;24335;24336;24337;24338 24336 8 GNYDEGFGHRPHK RIYCKPHFNQLFKSKGNYDEGFGHRPHKDL SKGNYDEGFGHRPHKDLWASKNENEEILER K G N H K D 0 1 1 1 0 0 1 3 2 0 0 1 0 1 1 0 0 0 1 0 0 0 13 1 1512.6858 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2 F8VQE1 289 301 LIMA1 LIM domain and actin-binding protein 1 yes no 2;3 0.0038314 86.344 3 0.57578 0.77285 30.112 3 Median 0.57578 0.77285 30.112 3 0 Median NaN NaN NaN 0 0 Median 18046000 12155000 5891600 18046000 12155000 5891600 0 0 0 4535 834 4641 16088;16089;16090 24339;24340;24341;24342 24341 4 GNYHYLVK WMTVHRIINHSVDKKGNYHYLVKWRDLPYD NHSVDKKGNYHYLVKWRDLPYDQSTWEEDE K G N V K W 0 0 1 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 2 1 0 0 8 0 992.50797 Q12873;H7C2H0 Q12873 645 652 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 2 0.029593 51.787 1 1.0689 1.4199 NaN 1 Median NaN NaN NaN 0 0 Median 1.0689 1.4199 NaN 1 0 Median 3005500 1003000 2002500 0 0 0 3005500 1003000 2002500 4536 1458 4642 16091 24343 24343 1 GPAFVNPLIPESPEEEELFR LDATFVMVARDSENKGPAFVNPLIPESPEE NPLIPESPEEEELFRQGELNKGRRIAFSST K G P F R Q 1 1 1 0 0 0 5 1 0 1 2 0 0 2 4 1 0 0 0 1 0 0 20 0 2269.1267 Q9Y305;H7C5Q2 Q9Y305 212 231 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 2 2.7804E-05 96.059 1 0.73836 0.99446 NaN 1 Median 0.73836 0.99446 NaN 1 0 Median NaN NaN NaN 0 0 Median 3172500 1863900 1308500 3172500 1863900 1308500 0 0 0 4537 1812 4643 16092 24344 24344 1 GPAPAGEQLR ______________________________ ______________________________ M G P L R G 2 1 0 0 0 1 1 2 0 0 1 0 0 0 2 0 0 0 0 0 0 0 10 0 994.51959 Q9H6R4;A0A0A0MRW6;B4DF80 Q9H6R4 2 11 NOL6 Nucleolar protein 6 yes no 2 0.0068649 57.59 1 1.1214 1.4732 NaN 1 Median 1.1214 1.4732 NaN 1 0 Median NaN NaN NaN 0 0 Median 6926400 3125700 3800700 6926400 3125700 3800700 0 0 0 4538 1738 4644 16093 24345 24345 1 GPASVPSVGK KPPVRNPQNSTVLARGPASVPSVGKAVATA TVLARGPASVPSVGKAVATAAQAQTGPEED R G P G K A 1 0 0 0 0 0 0 2 0 0 0 1 0 0 2 2 0 0 0 2 0 0 10 0 897.49198 E7ETY2;B4DRA2;J3KQ96;Q13428;Q59FZ2 E7ETY2 843 852 TCOF1 Treacle protein no no 2 0.0012955 78.06 1 2 1.0255 1.5434 9.2648 2 Median NaN NaN NaN 0 0 Median 1.0255 1.5434 9.2648 2 0 Median 22126000 9869000 12257000 0 0 0 22126000 9869000 12257000 4539 1016;1135;1469 4645 16094;16095;16096 24346;24347;24348;24349 24348 4 GPATLVAPASVITIVK CEALQGFARSVAAARGPATLVAPASVITIV PATLVAPASVITIVKSTPGSGSGPAHGPDP R G P V K S 3 0 0 0 0 0 0 1 0 2 1 1 0 0 2 1 2 0 0 3 0 0 16 0 1535.9287 Q9ULX9 Q9ULX9 126 141 MAFF Transcription factor MafF yes yes 2 1.3688E-18 135.1 4 2 1.2101 1.534 19.817 6 Median 1.2064 1.4973 12.769 4 0 Median 1.2391 1.9815 2.4427 2 0 Median 187680000 86688000 100990000 81763000 37640000 44123000 105910000 49048000 56867000 4540 1793 4646 16097;16098;16099;16100;16101;16102 24350;24351;24352;24353;24354;24355;24356;24357;24358;24359;24360 24355 11 GPAVGIDLGTTYSCVGVFQHGK ______________________________ LGTTYSCVGVFQHGKVEIIANDQGNRTTPS K G P G K V 1 0 0 1 1 1 0 5 1 1 1 1 0 1 1 1 2 0 1 3 0 0 22 0 2262.1103 V9HW22;P11142;E9PKE3;Q53GZ6;B3KTV0;Q53HF2;E9PNE6;B4DTX2;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PI65;E9PN25 V9HW22 4 25 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 2;3 1.5483E-59 195.97 6 2 0.61166 0.79555 34.163 6 Median 0.59969 0.7725 5.108 4 0 Median 0.94283 1.4647 13.411 2 0 Median 348360000 203730000 144640000 291800000 176380000 115420000 56565000 27351000 29215000 4541 1253 4647 16103;16104;16105;16106;16107;16108;16109;16110 24361;24362;24363;24364;24365;24366;24367;24368;24369;24370;24371;24372;24373;24374 24361 14 GPCIIYNEDNGIIK AGKGKMRNRRRIQRRGPCIIYNEDNGIIKA RGPCIIYNEDNGIIKAFRNIPGITLLNVSK R G P I K A 0 0 2 1 1 0 1 2 0 4 0 1 0 0 1 0 0 0 1 0 0 0 14 0 1604.7868 P36578;Q59GY2;B4DFI6;H3BM89;B4DMJ6;Q53G74;B4DMJ2 P36578 206 219 RPL4 60S ribosomal protein L4 yes no 2 5.067E-28 155.06 2 2 0.81032 1.0192 9.4351 2 Median 0.81032 1.0192 9.4351 2 0 Median NaN NaN NaN 0 0 Median 173720000 113000000 60718000 136240000 75518000 60718000 37483000 37483000 0 4542 1325 4648 16111;16112;16113;16114 24375;24376;24377;24378;24379 24376 5 GPECAAAATAGKPPRPDGPADPAK GTCEEASLPLERTLKGPECAAAATAGKPPR AGKPPRPDGPADPAKQGPLRTSARGLSRRL K G P A K Q 7 1 0 2 1 0 1 3 0 0 0 2 0 0 6 0 1 0 0 0 0 0 24 2 2301.1172 Q7Z5J4 Q7Z5J4 1742 1765 RAI1 Retinoic acid-induced protein 1 yes yes 3 0.0015679 79.467 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1822800 1822800 0 1822800 1822800 0 0 0 0 4543 1617 4649 16115 24380 24380 1 GPEEASSEVQDTNEVHVPGDQDEPQTLGK RSAGEAPSENQSPSKGPEEASSEVQDTNEV VHVPGDQDEPQTLGKKGSKNNISVYMTLNQ K G P G K K 1 0 1 3 0 3 5 3 1 0 1 1 0 0 3 2 2 0 0 3 0 0 29 0 3091.3854 Q96N64 Q96N64 529 557 PWWP2A PWWP domain-containing protein 2A yes yes 3 5.0439E-05 63.462 2 2 0.94482 1.3203 6.1456 3 Plateau 0.94697 1.2021 4.1076 2 0 Median 0.86979 1.3203 NaN 1 0 Median 18606000 12005000 6601300 3321100 1615500 1705600 15285000 10389000 4895700 4544 1695 4650 16116;16117;16118;16119 24381;24382;24383;24384;24385;24386;24387 24386 7 GPFTDVVTTNLK EQILVLDPPTDLKFKGPFTDVVTTNLKLRN KFKGPFTDVVTTNLKLRNPSDRKVCFKVKT K G P L K L 0 0 1 1 0 0 0 1 0 0 1 1 0 1 1 0 3 0 0 2 0 0 12 0 1290.682 A8KA83;Q9P0L0;E5RK64;Q59EZ6;Q53XM7;O95292 A8KA83 20 31 VAPA;VAPB Vesicle-associated membrane protein-associated protein A;Vesicle-associated membrane protein-associated protein B/C yes no 2 0.00065142 69.721 2 2 1.2522 1.7268 63.962 3 Plateau 0.74953 0.95399 12.718 2 0 Median 1.9057 2.8569 NaN 1 0 Median 35022000 12007000 23015000 15212000 7926700 7285500 19810000 4080500 15730000 4545 653 4651 16120;16121;16122;16123 24388;24389;24390;24391 24391 4 GPHLANSILFQSSGLTNGIIEEK EELEKNNAQSIRAIKGPHLANSILFQSSGL LFQSSGLTNGIIEEKDIHEELPKRKERKQE K G P E K D 1 0 2 0 0 1 2 3 1 3 3 1 0 1 1 3 1 0 0 0 0 0 23 0 2424.2649 A0A024R2Z6;Q9BVP2 A0A024R2Z6 433 455 GNL3 Guanine nucleotide-binding protein-like 3 yes no 3 1.8348E-30 110.75 2 1 0.58511 0.82667 14.916 2 Median 0.71609 0.91863 NaN 1 0 Median 0.47809 0.74393 NaN 1 0 Median 54170000 25498000 28673000 21437000 5467300 15969000 32734000 20031000 12703000 4546 95 4652 16124;16125;16126 24392;24393;24394 24394 3 GPILLPYQFR FHLGKIEELLSGENRGPILLPYQFRMEEIE SGENRGPILLPYQFRMEEIEGFRYRCRDAM R G P F R M 0 1 0 0 0 1 0 1 0 1 2 0 0 1 2 0 0 0 1 0 0 0 10 0 1202.6812 Q9NY93;Q53HB9;H7C3E9;H7BZN7 Q9NY93 410 419 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 2.3087E-05 117.93 2 2 0.91623 1.275 10.103 4 Median 1.061 1.4133 10.003 2 0 Median 0.83202 1.2248 1.1194 2 0 Median 65305000 34324000 30981000 34674000 16308000 18366000 30631000 18015000 12615000 4547 1768 4653 16127;16128;16129;16130 24395;24396;24397;24398;24399;24400 24398 6 GPISDALAHHLR DVGKTLCPLCFSILKGPISDALAHHLRERH ILKGPISDALAHHLRERHQVIQTVHPVEKK K G P L R E 2 1 0 1 0 0 0 1 2 1 2 0 0 0 1 1 0 0 0 0 0 0 12 0 1285.6891 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 633 644 ADNP Activity-dependent neuroprotector homeobox protein yes no 3 0.0020906 88.596 2 0.8281 1.1032 NaN 1 Median 0.8281 1.1032 NaN 1 0 Median NaN NaN NaN 0 0 Median 9173400 5176100 3997400 9173400 5176100 3997400 0 0 0 4548 729 4654 16131;16132 24401;24402 24401 2 GPLAAGLGPLVPGK TFARTVARSPVAPARGPLAAGLGPLVPGKV RGPLAAGLGPLVPGKVAATSVITIVKSKTD R G P G K V 2 0 0 0 0 0 0 4 0 0 3 1 0 0 3 0 0 0 0 1 0 0 14 0 1245.7445 A0A024R8X1;O15525 A0A024R8X1 131 144 hCG_1991559;MAFG Transcription factor MafG yes no 2 1.0317E-09 134.26 2 2 1.268 1.7586 11.377 4 Median 1.2509 1.5857 4.9553 2 0 Median 1.269 1.9159 2.4369 2 0 Median 49019000 20591000 28428000 20013000 9089800 10924000 29006000 11502000 17504000 4549 207 4655 16133;16134;16135;16136 24403;24404;24405;24406;24407 24406 5 GPLEPSEPAVVAAAR DQRDLAQDEAVWLERGPLEPSEPAVVAAAR GPLEPSEPAVVAAARVGVGHAG________ R G P A R V 4 1 0 0 0 0 2 1 0 0 1 0 0 0 3 1 0 0 0 2 0 0 15 0 1462.778 A2IDA3;Q1W6H1;P29372 A2IDA3 230 244 MPG DNA-3-methyladenine glycosylase yes no 2 2.0732E-05 72.652 2 2 0.47249 0.6684 17.712 4 Median 0.55361 0.76352 3.0404 2 0 Median 0.39011 0.56769 7.3213 2 0 Median 35059000 22650000 12409000 8516500 4589400 3927100 26542000 18060000 8481900 4550 537 4656 16137;16138;16139;16140 24408;24409;24410;24411;24412;24413 24413 6 GPLLEDGALSQAVSAGASSPEFTK METDILESLEDLGYKGPLLEDGALSQAVSA SQAVSAGASSPEFTKLCAWLVSELRVLCKL K G P T K L 4 0 0 1 0 1 2 3 0 0 3 1 0 1 2 4 1 0 0 1 0 0 24 0 2331.1594 E9PH82;I6L9E8;Q8NCA5;Q05CT2;C9J3G8 E9PH82 21 44 FAM98A Protein FAM98A yes no 2 1.117E-57 189.52 4 0.84904 1.0768 9.6396 4 Median 0.84904 1.0768 9.6396 4 0 Median NaN NaN NaN 0 0 Median 38177000 20787000 17390000 38177000 20787000 17390000 0 0 0 4551 1028 4657 16141;16142;16143;16144 24414;24415;24416;24417;24418;24419;24420;24421 24417 8 GPLLEEQALTK MEGDVLDTLEALGYKGPLLEEQALTKAAEG LGYKGPLLEEQALTKAAEGGLSSPEFSELC K G P T K A 1 0 0 0 0 1 2 1 0 0 3 1 0 0 1 0 1 0 0 0 0 0 11 0 1197.6605 Q52LJ0 Q52LJ0 27 37 FAM98B Protein FAM98B yes yes 2 1.5138E-05 80.239 1 1 1.1472 1.6829 NaN 1 Median NaN NaN NaN 0 0 Median 1.1472 1.6829 NaN 1 0 Median 5683900 2996900 2687000 0 0 0 5683900 2996900 2687000 4552 1537 4658 16145;16146 24422;24423 24422 2 GPLLVSTESHPVK VFQKPSGVSAALALKGPLLVSTESHPVKSG LKGPLLVSTESHPVKSGIHKWISDYADSVP K G P V K S 0 0 0 0 0 0 1 1 1 0 2 1 0 0 2 2 1 0 0 2 0 0 13 0 1362.7507 Q9Y3A4 Q9Y3A4 137 149 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 2 1.4265E-10 125.74 3 2 0.86092 1.1793 12.037 4 Median 1.0554 1.3186 11.591 2 0 Median 0.747 1.1137 3.8927 2 0 Median 93952000 52727000 41225000 77105000 43228000 33877000 16847000 9499000 7347600 4553 1815 4659 16147;16148;16149;16150;16151 24424;24425;24426;24427;24428;24429 24427 6 GPLPAGTILK GQASTGPVTQIIQTKGPLPAGTILKLVTSA IIQTKGPLPAGTILKLVTSADGKPTTIITT K G P L K L 1 0 0 0 0 0 0 2 0 1 2 1 0 0 2 0 1 0 0 0 0 0 10 0 965.59097 A6NEM2;P51610 A6NEM2 714 723 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 0.024094 42.864 1 0.702 0.88662 NaN 1 Median 0.702 0.88662 NaN 1 0 Median NaN NaN NaN 0 0 Median 8540400 5171000 3369400 8540400 5171000 3369400 0 0 0 4554 564 4660 16152 24430 24430 1 GPLPLSSQHR TSSHNLQSIFNIGSRGPLPLSSQHRGDADQ NIGSRGPLPLSSQHRGDADQASNILASFGL R G P H R G 0 1 0 0 0 1 0 1 1 0 2 0 0 0 2 2 0 0 0 0 0 0 10 0 1090.5883 A0A0R4J2E8;A8MXP9;P43243;D6REM6;Q68D11;D6R991;D6R8Z5 A0A0R4J2E8 93 102 MATR3;DKFZp686K23100 Matrin-3 yes no 2;3 0.005044 53.775 1 1 0.88731 1.168 122.51 2 Median 0.36866 0.49116 NaN 1 0 Median 2.1356 2.7775 NaN 1 0 Median 30265000 18682000 11583000 25098000 17286000 7811400 5167700 1395800 3771900 4555 445 4661 16153;16154 24431;24432 24431 2 GPLQSVQVFGR ______________________________ MPSKGPLQSVQVFGRKKTATAVAHCKRGNG K G P G R K 0 1 0 0 0 2 0 2 0 0 1 0 0 1 1 1 0 0 0 2 0 0 11 0 1186.6459 P62249;M0R210;M0R3H0;A0A087WZ27;Q6IPX4 P62249 5 15 RPS16;ZNF90 40S ribosomal protein S16 yes no 2 1.5589E-36 193.1 4 2 0.81632 1.1319 15.35 6 Median 0.79541 1.0929 3.8998 4 0 Median 0.89799 1.4705 1.282 2 0 Median 1144000000 612830000 531220000 921020000 495340000 425680000 223020000 117490000 105530000 4556 1400 4662 16155;16156;16157;16158;16159;16160 24433;24434;24435;24436;24437;24438;24439;24440;24441;24442;24443;24444;24445 24440 13 GPLSQEALMELFPK LTDLYYQRLALCGCKGPLSQEALMELFPKL KGPLSQEALMELFPKLQANISTGVSKIRLL K G P P K L 1 0 0 0 0 1 2 1 0 0 3 1 1 1 2 1 0 0 0 0 0 0 14 0 1558.8065 O75691 O75691 620 633 UTP20 Small subunit processome component 20 homolog yes yes 2 0.00076733 59.84 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3128100 3128100 0 0 0 0 3128100 3128100 0 4557 1207 4663 16161 24446 24446 447 1 GPLVPFPNQK SAMKSEEQKIKDARKGPLVPFPNQKSEAAE KDARKGPLVPFPNQKSEAAEPPKTPPSSCD K G P Q K S 0 0 1 0 0 1 0 1 0 0 1 1 0 1 3 0 0 0 0 1 0 0 10 0 1095.6077 E3VVS3;A0A0C4DFR3;Q9NQR1;C9JKQ0 E3VVS3 92 101 SETD8 N-lysine methyltransferase SETD8 yes no 2 0.00012724 94.262 2 1.3618 1.9962 7.4519 2 Median NaN NaN NaN 0 0 Median 1.3618 1.9962 7.4519 2 0 Median 13389000 5091300 8297200 0 0 0 13389000 5091300 8297200 4558 419 4664 16162;16163 24447;24448;24449 24449 3 GPPDFSSDEEREPTPVLGSGAAAAGR TARNRPPLPAGTNSKGPPDFSSDEEREPTP EPTPVLGSGAAAAGRSRAAVGRKATKKTDK K G P G R S 4 2 0 2 0 0 3 4 0 0 1 0 0 1 4 3 1 0 0 1 0 0 26 1 2569.2045 A0A024RBE7;P42167;G5E972;A0A024RBH7;Q59G12;P42166 P42166 61 86 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin no no 3 1.4068E-20 115.96 4 2 0.5493 0.74235 44.612 6 Median 0.52994 0.72208 5.4635 4 0 Median 1.0833 1.6944 4.841 2 0 Median 222690000 128410000 94279000 130100000 83992000 46111000 92584000 44415000 48169000 4559 1335;270 4665 16164;16165;16166;16167;16168;16169 24450;24451;24452;24453;24454;24455;24456;24457;24458;24459;24460;24461;24462 24461 13 GPPEPPPVQLELEDK YNIKGRQQAGPGPSKGPPEPPPVQLELEDK GPPEPPPVQLELEDKDTLKGVDASNALVLP K G P D K D 0 0 0 1 0 1 3 1 0 0 2 1 0 0 5 0 0 0 0 1 0 0 15 0 1643.8407 Q8IY37 Q8IY37 23 37 DHX37 Probable ATP-dependent RNA helicase DHX37 yes yes 2 0.005018 39.917 1 0.41454 0.62416 NaN 1 Median NaN NaN NaN 0 0 Median 0.41454 0.62416 NaN 1 0 Median 7968700 5018300 2950500 0 0 0 7968700 5018300 2950500 4560 1627 4666 16170 24463 24463 1 GPPGPALPATMNNSSSETR ______________________________ PALPATMNNSSSETRGHPHSASSPSERVFP M G P T R G 2 1 2 0 0 0 1 2 0 0 1 0 1 0 4 3 2 0 0 0 0 0 19 0 1882.8843 Q15003;A8K4T8;C9JZP1 Q15003 2 20 NCAPH Condensin complex subunit 2 yes no 2 1.167E-06 65.563 1 0.41345 0.6517 NaN 1 Median NaN NaN NaN 0 0 Median 0.41345 0.6517 NaN 1 0 Median 26106000 18306000 7799900 0 0 0 26106000 18306000 7799900 4561 1500 4667 16171 24464 24464 681 1 GPQITGPSLEGDLGLK SVPSANIEGLEGKLKGPQITGPSLEGDLGL PQITGPSLEGDLGLKGAKPQGHIGVDASAP K G P L K G 0 0 0 1 0 1 1 4 0 1 3 1 0 0 2 1 1 0 0 0 0 0 16 0 1580.841 Q09666;B4DTV0 Q09666 372 387 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.0029397 94.688 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17779000 2782000 14997000 2782000 2782000 0 14997000 0 14997000 4562 1453 4668 16172;16173;16174;16175 24465;24466;24467;24468 24467 4 GPQNAFFLVK KFPEKKGGLKELFGKGPQNAFFLVKFWADL ELFGKGPQNAFFLVKFWADLNCNIQDDAGA K G P V K F 1 0 1 0 0 1 0 1 0 0 1 1 0 2 1 0 0 0 0 1 0 0 10 0 1119.6077 H0YE88;P28347;E9PKB7;Q59EF3 H0YE88 280 289 TEAD1 Transcriptional enhancer factor TEF-1 yes no 2 0.01031 81.191 2 2 0.67631 0.90973 3.8543 2 Median 0.68093 0.88527 NaN 1 0 Median 0.67172 0.93486 NaN 1 0 Median 7920900 4727200 3193700 3291100 1940900 1350300 4629700 2786300 1843400 4563 1099 4669 16176;16177;16178;16179 24469;24470;24471;24472;24473 24472 5 GPQPPTVSPIR PFEKAAFQKQNDTPKGPQPPTVSPIRSSRP DTPKGPQPPTVSPIRSSRPPPAKRKKSQSR K G P I R S 0 1 0 0 0 1 0 1 0 1 0 0 0 0 4 1 1 0 0 1 0 0 11 0 1147.635 P46087 P46087 779 789 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 3.4368E-06 108.98 4 1 0.76752 1.0394 13.6 5 Median 0.82012 1.0427 8.8184 4 0 Linear 0.50024 0.78336 NaN 1 0 Median 81484000 46124000 35360000 58343000 30227000 28116000 23142000 15898000 7244300 4564 1343 4670 16180;16181;16182;16183;16184 24474;24475;24476;24477;24478;24479;24480;24481 24478 8 GPQSLFNAPR PKGISAGAVQTAGKKGPQSLFNAPRGKKRP TAGKKGPQSLFNAPRGKKRPAPGSDEEEEE K G P P R G 1 1 1 0 0 1 0 1 0 0 1 0 0 1 2 1 0 0 0 0 0 0 10 0 1085.5618 P46087;F5H5X6;F5GWB7;F5H709 P46087 93 102 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2 2.475E-06 119.27 2 2 0.79981 1.0486 NaN 1 Median 0.79981 1.0486 NaN 1 0 Median NaN NaN NaN 0 0 Median 16797000 4763000 12034000 8088100 4763000 3325100 8708900 0 8708900 4565 1343 4671 16185;16186;16187;16188 24482;24483;24484;24485;24486 24484 5 GPSGCVESLEVTCR LRHTGYVIELQHVVKGPSGCVESLEVTCRR KGPSGCVESLEVTCRRADAGEKPKAFIHWV K G P C R R 0 1 0 0 2 0 2 2 0 0 1 0 0 0 1 2 1 0 0 2 0 0 14 0 1549.6865 B4DNN3;Q53HS0;A8K3A8;P47897;Q9H3A5;Q9BUZ3;B4DDN1;Q96AW5;A0A1B0GVU9;H7C0R3;A0A0U1RQX5;A0A0U1RQX9 B4DNN3 603 616 QARS Glutamine--tRNA ligase yes no 2 5.8769E-13 151.13 3 0.39197 0.53611 NaN 1 Median 0.39197 0.53611 NaN 1 0 Median NaN NaN NaN 0 0 Median 11274000 9170400 2103800 11274000 9170400 2103800 0 0 0 4566 591 4672 16189;16190;16191 24487;24488;24489 24487 3 GPSGLLTYTGK QYLDSLKVGDVVEFRGPSGLLTYTGKGHFN VEFRGPSGLLTYTGKGHFNIQPNKKSPPEP R G P G K G 0 0 0 0 0 0 0 3 0 0 2 1 0 0 1 1 2 0 1 0 0 0 11 0 1092.5815 H7C0R7;Q9UHQ9 H7C0R7 80 90 CYB5R1 NADH-cytochrome b5 reductase 1 yes no 2 0.044694 44.863 1 1 2.6073 3.4473 NaN 1 Median NaN NaN NaN 0 0 Median 2.6073 3.4473 NaN 1 0 Median 2888000 707040 2181000 0 0 0 2888000 707040 2181000 4567 1122 4673 16192;16193 24490;24491 24491 2 GPSGLLVYQGK QYLESMQIGDTIEFRGPSGLLVYQGKGKFA IEFRGPSGLLVYQGKGKFAIRPDKKSNPII R G P G K G 0 0 0 0 0 1 0 3 0 0 2 1 0 0 1 1 0 0 1 1 0 0 11 0 1117.6132 A0A024R4X0;P00387;B1AHF3;Q6ZVI6 A0A024R4X0 134 144 CYB5R3 NADH-cytochrome b5 reductase;NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 2 0.026453 91.087 1 1 0.87553 1.152 NaN 1 Median 0.87553 1.152 NaN 1 0 Median NaN NaN NaN 0 0 Median 6299700 1588600 4711200 3056600 1588600 1468100 3243100 0 3243100 4568 129 4674 16194;16195 24492;24493 24493 1 GPSSVEDIK QESFKKQEKTPKTPKGPSSVEDIKAKMQAS TPKTPKGPSSVEDIKAKMQASIEKGGSLPK K G P I K A 0 0 0 1 0 0 1 1 0 1 0 1 0 0 1 2 0 0 0 1 0 0 9 0 930.46583 A0A0S2Z4G7;A0A0S2Z491;P06748;A0A140VJQ2;A4ZU86;Q9BTI9;A0A024R3V9;Q9NX34 A0A0S2Z4G7 211 219 NPM1;hCG_37498 Nucleophosmin no no 2 1.196E-05 122.52 5 1 0.74195 0.93529 16.339 3 Median 0.71076 0.9125 3.4883 2 0 Median 0.75296 1.2071 NaN 1 0 Median 332650000 148270000 184380000 211390000 75890000 135500000 121250000 72380000 48875000 4569 462;1765 4675 16196;16197;16198;16199;16200;16201 24494;24495;24496;24497;24498;24499;24500;24501;24502 24498 9 GPTPFNQNQLHQLR PLDGADPQALGQQNRGPTPFNQNQLHQLRA RGPTPFNQNQLHQLRAQIMAYKMLARGQPL R G P L R A 0 1 2 0 0 3 0 1 1 0 2 0 0 1 2 0 1 0 0 0 0 0 14 0 1648.8434 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;Q59FZ6;A5D6X0 A7E2E1 168 181 SMARCA4 Transcription activator BRG1 yes no 3 1.8231E-07 105.25 2 2 1.1355 1.7223 10.609 2 Median NaN NaN NaN 0 0 Median 1.1355 1.7223 10.609 2 0 Median 34581000 16388000 18193000 0 0 0 34581000 16388000 18193000 4570 403 4676 16202;16203;16204;16205 24503;24504;24505;24506;24507;24508;24509 24507 7 GPTVSNIR EDYRRLKSLLIDFFRGPTVSNIRLAGLEYV LLIDFFRGPTVSNIRLAGLEYVLHFTALNG R G P I R L 0 1 1 0 0 0 0 1 0 1 0 0 0 0 1 1 1 0 0 1 0 0 8 0 842.46102 A8K800;Q9H7B2;Q5VXN0;B4DWS5 A8K800 169 176 RPF2 Ribosome production factor 2 homolog yes no 2 0.0015975 113.7 1 1 0.66801 0.93763 10.171 2 Median 0.75769 1.0075 NaN 1 0 Median 0.58895 0.87257 NaN 1 0 Median 24298000 14869000 9429200 16584000 10076000 6508800 7713300 4792900 2920400 4571 637 4677 16206;16207 24510;24511 24510 2 GPVEGYEENEEFLR FLEAADNLRLIQVPKGPVEGYEENEEFLRT KGPVEGYEENEEFLRTMHHLLLEVRSGPSL K G P L R T 0 1 1 0 0 0 5 2 0 0 1 0 0 1 1 0 0 0 1 1 0 0 14 0 1666.7475 F5GX77;A0A024R565;Q9UI30;F5GYQ2 F5GX77 69 82 TRMT112;HSPC152 Multifunctional methyltransferase subunit TRM112-like protein yes no 2 7.1844E-27 179.57 4 1 0.76064 1.0458 122.59 4 Median 1.2007 1.6517 75.524 3 0 Plateau 4.3441 6.1508 NaN 1 0 Median 27828000 14205000 13622000 20820000 13001000 7818500 7008100 1204400 5803800 4572 134 4678 16208;16209;16210;16211;16212 24512;24513;24514;24515;24516;24517;24518;24519 24512 8 GPVFAPPYEPLPENVK ERYPEGIKWKFLEHKGPVFAPPYEPLPENV PVFAPPYEPLPENVKFYYDGKVMKLSPKAE K G P V K F 1 0 1 0 0 0 2 1 0 0 1 1 0 1 5 0 0 0 1 2 0 0 16 0 1752.9087 P11387;B9EG90 P11387 224 239 TOP1 DNA topoisomerase 1 yes no 2 2.2624E-09 114.76 3 2 0.79875 1.0652 11.757 5 Median 0.76567 1.013 2.9233 3 0 Median 0.80572 1.2692 3.4219 2 0 Median 1670400000 926820000 743610000 967350000 528740000 438610000 703080000 398080000 305000000 4573 1255 4679 16213;16214;16215;16216;16217 24520;24521;24522;24523;24524;24525;24526;24527;24528 24524 9 GPVGLEGLLTTK LGAEVGISTSRIHARGPVGLEGLLTTKWLL HARGPVGLEGLLTTKWLLRGKDHVVSDFSE R G P T K W 0 0 0 0 0 0 1 3 0 0 3 1 0 0 1 0 2 0 0 1 0 0 12 0 1183.6812 P54886 P54886 750 761 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 4.0557E-05 116.52 5 1 1.3461 1.707 33.329 6 Median 1.3208 1.6768 6.4469 5 0 Median 2.5159 3.6967 NaN 1 0 Median 45178000 18979000 26199000 39431000 16904000 22527000 5747500 2075800 3671700 4574 1375 4680 16218;16219;16220;16221;16222;16223 24529;24530;24531;24532;24533;24534;24535 24532 7 GPVREGDVLTLLESER EFMDDTSRSIIRNVKGPVREGDVLTLLESE PVREGDVLTLLESEREARRLR_________ K G P E R E 0 2 0 1 0 0 3 2 0 0 3 0 0 0 1 1 1 0 0 2 0 0 16 1 1768.9319 B2R4R9;P62857 B2R4R9 48 63 RPS28 40S ribosomal protein S28 yes no 3 5.0188E-07 82.942 3 0.89011 1.2237 4.8596 3 Median 0.89011 1.2237 4.8596 3 0 Median NaN NaN NaN 0 0 Median 125190000 64617000 60576000 125190000 64617000 60576000 0 0 0 4575 687 4681 16224;16225;16226 24536;24537;24538;24539;24540;24541 24541 6 GPVTIPYPLFQSHVEDLYVEGLPEGIPFR EELFERKYAQAIKAKGPVTIPYPLFQSHVE EDLYVEGLPEGIPFRRPSTYGIPRLERILL K G P F R R 0 1 0 1 0 1 3 3 1 2 3 0 0 2 5 1 1 0 2 3 0 0 29 0 3268.6809 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347 X5D2J9 340 368 GTF2I General transcription factor II-I yes no 3 0.00010516 32.409 1 0.92743 1.2334 NaN 1 Median 0.92743 1.2334 NaN 1 0 Median NaN NaN NaN 0 0 Median 16785000 9103900 7681100 16785000 9103900 7681100 0 0 0 4576 651 4682 16227 24542 24542 1 GPVTIVSGK CLIRNFTRQKLTEIRGPVTIVSGKKRRLTI KLTEIRGPVTIVSGKKRRLTIIECGCDINM R G P G K K 0 0 0 0 0 0 0 2 0 1 0 1 0 0 1 1 1 0 0 2 0 0 9 0 856.50182 Q14692 Q14692 116 124 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.023422 50.04 1 2 0.82814 1.0308 5.4507 3 Plateau 0.82814 1.0308 NaN 1 0 Median 0.64107 0.95009 3.8819 2 0 Median 61186000 34520000 26667000 47140000 25987000 21153000 14047000 8532800 5513800 4577 1495 4683 16228;16229;16230 24543;24544;24545;24546 24543 4 GPYESGSGHSSGLGHQESR SYGPHGYGSGRSSSRGPYESGSGHSSGLGH SGSGHSSGLGHQESRSGQSSGYGQHGSSSG R G P S R S 0 1 0 0 0 1 2 5 2 0 1 0 0 0 1 5 0 0 1 0 0 0 19 0 1927.8409 CON__Q86YZ3;Q86YZ3 CON__Q86YZ3 572 590 HRNR Hornerin yes no 2;3 0.00016832 83.253 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6434200 6434200 0 5487600 5487600 0 946640 946640 0 + 4578 973 4684 16231;16232;16233;16234 24547;24548;24549;24550 24549 4 GPYESGSGHSSGLGHR SYGPYRSGSGWSSSRGPYESGSGHSSGLGH PYESGSGHSSGLGHRESRSGQSSGYGQHGS R G P H R E 0 1 0 0 0 0 1 5 2 0 1 0 0 0 1 4 0 0 1 0 0 0 16 0 1583.7077 CON__Q86YZ3;Q86YZ3 CON__Q86YZ3 1038 1053 HRNR Hornerin yes no 2;3;4 3.2537E-82 230.81 7 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39926000 39926000 0 35394000 35394000 0 4532000 4532000 0 + 4579 973 4685 16235;16236;16237;16238;16239;16240;16241;16242;16243;16244 24551;24552;24553;24554;24555;24556;24557;24558;24559;24560;24561 24556 11 GPYHFR YLAFLRKRMNTNPSRGPYHFRAPSRIFWRT KRMNTNPSRGPYHFRAPSRIFWRTVRGMLP R G P F R A 0 1 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 1 0 0 0 6 0 775.37656 Q53H34;P40429;Q5QTS3;M0QYS1;Q8J015;Q0VGL3;B4DNC8;Q9BSQ6 Q53H34 69 74 RPL13A;RPL13a 60S ribosomal protein L13a no no 2 0.036048 96.839 1 1 0.68895 1.031 10.074 2 Median 0.69144 0.96011 NaN 1 0 Median 0.68646 1.1071 NaN 1 0 Median 309650000 180380000 129260000 219300000 126890000 92410000 90349000 53494000 36855000 4580 1332;1712 4686 16245;16246 24562;24563 24563 2 GQAAVQQLQAEGLSPR LFSGDVVLTARDVTRGQAAVQQLQAEGLSP QAAVQQLQAEGLSPRFHQLDIDDLQSIRAL R G Q P R F 3 1 0 0 0 4 1 2 0 0 2 0 0 0 1 1 0 0 0 1 0 0 16 0 1651.8642 E9PQ63;A8MTM1;P16152;V9HW40;Q53F60;O75828 E9PQ63 43 58 CBR1;HEL-S-25;CBR3 Carbonyl reductase [NADPH] 1;Carbonyl reductase [NADPH] 3 yes no 2 3.8322E-06 120.59 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2730500 2730500 0 2730500 2730500 0 0 0 0 4581 657 4687 16247;16248 24564;24565 24565 2 GQDIEYIEIR EINKIIRDLWRSTYRGQDIEYIEIRSDADE RSTYRGQDIEYIEIRSDADENVSASDKRRN R G Q I R S 0 1 0 1 0 1 2 1 0 3 0 0 0 0 0 0 0 0 1 0 0 0 10 0 1234.6194 Q92878;H7C0V2 Q92878 1157 1166 RAD50 DNA repair protein RAD50 yes no 2 0.0027789 72.607 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4582 1676 4688 16249 24566 24566 1 GQDPGAPQLQSESKPPK ARLEAQEQAFLARLKGQDPGAPQLQSESKP DPGAPQLQSESKPPKKKKKKRRQKEEEEAT K G Q P K K 1 0 0 1 0 3 1 2 0 0 1 2 0 0 4 2 0 0 0 0 0 0 17 1 1762.885 Q5T3I0;A8KAG1;A0A0A0MRK1;E9PAV9;F8W895 Q5T3I0 187 203 GPATCH4 G patch domain-containing protein 4 yes no 2;3 9.497E-11 143.76 7 2 0.80516 1.0779 10.962 8 Median 0.81907 1.0182 8.6743 6 0 Median 0.77404 1.2113 5.4369 2 0 Median 109620000 59953000 49664000 92340000 50636000 41704000 17276000 9316900 7959500 4583 1568 4689 16250;16251;16252;16253;16254;16255;16256;16257;16258 24567;24568;24569;24570;24571;24572;24573;24574;24575;24576;24577;24578;24579 24568 11 GQDPGAPQLQSESKPPKK ARLEAQEQAFLARLKGQDPGAPQLQSESKP PGAPQLQSESKPPKKKKKKRRQKEEEEATA K G Q K K K 1 0 0 1 0 3 1 2 0 0 1 3 0 0 4 2 0 0 0 0 0 0 18 2 1890.9799 Q5T3I0;A8KAG1;A0A0A0MRK1;E9PAV9;F8W895 Q5T3I0 187 204 GPATCH4 G patch domain-containing protein 4 yes no 3 6.7502E-15 126.63 4 2 0.87807 1.1334 16.162 6 Median 0.8917 1.0311 9.2412 4 0 Median 0.8052 1.3785 8.9189 2 0 Median 42475000 22186000 20289000 32846000 17164000 15682000 9628500 5021500 4607000 4584 1568 4690 16259;16260;16261;16262;16263;16264 24580;24581;24582;24583;24584;24585;24586;24587;24588;24589;24590 24584 11 GQDSEQPQAQLQPEAQLHAPAQPQPQLQLQLQSHK KPGSMQPRHLKSPVRGQDSEQPQAQLQPEA AQPQPQLQLQLQSHKGFLEQEGSPLSLGQS R G Q H K G 4 0 0 1 0 12 2 1 2 0 5 1 0 0 5 2 0 0 0 0 0 0 35 0 3895.9565 J3QK86;J3KPG5;F8VU39;Q9UIF9;A0A0C4DGI9 J3QK86 1179 1213 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 4 4.4244E-09 67.335 4 1 0.75581 0.92511 33.158 5 Median 0.63324 0.79243 25.919 4 0 Median 0.9286 1.3916 NaN 1 0 Median 60675000 33763000 26912000 48087000 26810000 21277000 12588000 6952700 5635500 4585 1062 4691 16265;16266;16267;16268;16269 24591;24592;24593;24594;24595;24596;24597;24598;24599;24600;24601;24602;24603 24598 13 GQEADLEAGGEEVPEANGSAGK HQENSRNQKPKKRKKGQEADLEAGGEEVPE AGGEEVPEANGSAGKRSKKKKQRKDSASEE K G Q G K R 4 0 1 1 0 1 5 5 0 0 1 1 0 0 1 1 0 0 0 1 0 0 22 0 2113.94 Q9NX58 Q9NX58 226 247 LYAR Cell growth-regulating nucleolar protein yes yes 2 5.8401E-86 231.06 3 0.96925 1.2614 26.22 3 Median 0.96925 1.2614 26.22 3 0 Median NaN NaN NaN 0 0 Median 11091000 5148700 5942500 11091000 5148700 5942500 0 0 0 4586 1766 4692 16270;16271;16272 24604;24605;24606;24607;24608;24609 24608 6 GQEDLLSEFGQFLPEAK MSEEEVFTEVANLFRGQEDLLSEFGQFLPE EDLLSEFGQFLPEAKRSLFTGNGPCEMHSV R G Q A K R 1 0 0 1 0 2 3 2 0 0 3 1 0 2 1 1 0 0 0 0 0 0 17 0 1906.9313 O75182;M0R271 O75182 223 239 SIN3B Paired amphipathic helix protein Sin3b yes no 2 0.018198 74.853 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 412100 412100 0 412100 412100 0 0 0 0 4587 1197 4693 16273 24610 24610 1 GQEVETSVTYYR ______________________________ DGKGQEVETSVTYYRLEEVAKRNSLKELWL K G Q Y R L 0 1 0 0 0 1 2 1 0 0 0 0 0 0 0 1 2 0 2 2 0 0 12 0 1430.6678 Q5HYD9;D6RFH4;H3BUX2;J3KNF8;O43169 Q5HYD9 13 24 DKFZp686M0619;CYB5B Cytochrome b5 type B yes no 2 2.8872E-06 140.07 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1181100 0 1181100 1181100 0 1181100 0 0 0 4588 993 4694 16274;16275 24611;24612 24611 2 GQFNFDHPDAFDNELILK FYRVLTSEQKAKALKGQFNFDHPDAFDNEL NFDHPDAFDNELILKTLKEITEGKTVQIPV K G Q L K T 1 0 2 3 0 1 1 1 1 1 2 1 0 3 1 0 0 0 0 0 0 0 18 0 2119.0011 A0A024R912;Q9BZX2;B4DGD3 A0A024R912 79 96 UCK2 Uridine kinase;Uridine-cytidine kinase 2 yes no 3 0.031334 15.984 1 0.30789 0.38736 NaN 1 Median 0.30789 0.38736 NaN 1 0 Median NaN NaN NaN 0 0 Median 15326000 11513000 3812500 15326000 11513000 3812500 0 0 0 4589 211 4695 16276 24613 24613 1 GQGASRPHAPGTPAGR SDRRGPERRGGKRDRGQGASRPHAPGTPAG QGASRPHAPGTPAGRVRPELKTKQQILKQR R G Q G R V 3 2 0 0 0 1 0 4 1 0 0 0 0 0 3 1 1 0 0 0 0 0 16 1 1515.7655 Q8TDD1 Q8TDD1 803 818 DDX54 ATP-dependent RNA helicase DDX54 yes yes 3 0.00016302 94.007 1 2 0.67723 0.89338 22.16 3 Median 0.93301 1.3002 NaN 1 0 Median 0.66585 0.88597 1.1774 2 0 Median 12018000 7247200 4771100 3103900 1722600 1381300 8914400 5524600 3389800 4590 1658 4696 16277;16278;16279 24614;24615;24616;24617;24618 24614 5 GQHEPSKPPPAGETVTGGFGAK QPLLELTPRAPGSPRGQHEPSKPPPAGETV PPPAGETVTGGFGAKKRKGSSSQAPASKKL R G Q A K K 2 0 0 0 0 1 2 5 1 0 0 2 0 1 4 1 2 0 0 1 0 0 22 1 2148.06 Q9H6F5 Q9H6F5 191 212 CCDC86 Coiled-coil domain-containing protein 86 yes yes 2;3;4 5.2098E-30 121 8 1 0.77082 0.94538 7.2661 7 Median 0.77132 0.94657 3.7383 6 0 Median 0.4976 0.8016 NaN 1 0 Median 420260000 235120000 185140000 402800000 223020000 179780000 17456000 12102000 5353500 4591 1737 4697 16280;16281;16282;16283;16284;16285;16286;16287;16288 24619;24620;24621;24622;24623;24624;24625;24626;24627;24628;24629;24630;24631;24632;24633;24634 24628 16 GQHVPGSPFQFTVGPLGEGGAHK VPAEMGTHTVSVKYKGQHVPGSPFQFTVGP FQFTVGPLGEGGAHKVRAGGPGLERAEAGV K G Q H K V 1 0 0 0 0 2 1 6 2 0 1 1 0 2 3 1 1 0 0 2 0 0 23 0 2303.1447 P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5;Q2VP91;H0Y5C6;Q14315;Q59H94 P21333 2218 2240 FLNA;FLJ00119;FLNC Filamin-A;Filamin-C no no 4 9.5044E-05 67.563 1 0.91319 1.162 NaN 1 Median 0.91319 1.162 NaN 1 0 Median NaN NaN NaN 0 0 Median 8201800 4366200 3835600 8201800 4366200 3835600 0 0 0 4592 1287;1486 4698 16289 24635 24635 1 GQILMPNIGYGSNK RKPRGIDNRVRRRFKGQILMPNIGYGSNKK KGQILMPNIGYGSNKKTKHMLPSGFRKFLV K G Q N K K 0 0 2 0 0 1 0 3 0 2 1 1 1 0 1 1 0 0 1 0 0 0 14 0 1490.7551 D3YTB1;A0A024R2G7;F8W727;P62910 D3YTB1 51 64 RPL32 60S ribosomal protein L32 yes no 2 8.5712E-06 123.01 5 4 0.56636 0.89793 20.241 8 Median 0.66658 0.84972 30.525 4 0 Median 0.5572 0.89793 3.1933 4 0 Median 190870000 123850000 67028000 23241000 14250000 8990400 167630000 109590000 58037000 4593 85 4699;4700 16290;16291;16292;16293;16294;16295;16296;16297;16298 24636;24637;24638;24639;24640;24641;24642;24643;24644;24645;24646;24647;24648 24648 49 13 GQILMPNIGYGSNKK RKPRGIDNRVRRRFKGQILMPNIGYGSNKK GQILMPNIGYGSNKKTKHMLPSGFRKFLVH K G Q K K T 0 0 2 0 0 1 0 3 0 2 1 2 1 0 1 1 0 0 1 0 0 0 15 1 1618.8501 D3YTB1;A0A024R2G7;F8W727;P62910 D3YTB1 51 65 RPL32 60S ribosomal protein L32 yes no 2;3 3.5917E-05 106.67 8 4 0.71294 0.8721 11.702 9 Median 0.79029 0.97331 9.8439 6 0 Median 0.50621 0.80519 5.1485 3 0 Median 153630000 89683000 63951000 88948000 46982000 41966000 64686000 42701000 21985000 4594 85 4701;4702 16299;16300;16301;16302;16303;16304;16305;16306;16307;16308;16309;16310 24649;24650;24651;24652;24653;24654;24655;24656;24657;24658;24659;24660;24661;24662;24663;24664;24665 24658 49 15 GQLCELSCSTDYR KNNRDLDFTIDLDFKGQLCELSCSTDYRMR FKGQLCELSCSTDYRMR_____________ K G Q Y R M 0 1 0 1 2 1 1 1 0 0 2 0 0 0 0 2 1 0 1 0 0 0 13 0 1587.6657 A0A087X1W2;E9PKG1;Q5U8W9;H7C2I1;Q99873 A0A087X1W2 271 283 PRMT1;HRMT1L2 Protein arginine N-methyltransferase 1 yes no 2 0.0040315 88.155 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3586500 3586500 0 3586500 3586500 0 0 0 0 4595 374 4703 16311;16312 24666;24667 24667 2 GQLEALQVDGGR SRLPDIFEAQIAGLRGQLEALQVDGGRLEA GLRGQLEALQVDGGRLEAELRSMQDVVEDF R G Q G R L 1 1 0 1 0 2 1 3 0 0 2 0 0 0 0 0 0 0 0 1 0 0 12 0 1241.6364 CON__P08729;CON__Q3KNV1;P08729;B3KY79 CON__Q3KNV1 150 161 KRT7 Keratin, type II cytoskeletal 7 no no 2 2.628E-07 96.009 2 1 0.48723 0.67989 101.67 2 Median 0.2485 0.33129 NaN 1 0 Median 0.95533 1.3953 NaN 1 0 Median 43217000 24694000 18523000 29104000 17512000 11592000 14113000 7182300 6930400 + 4596 968;957 4704 16313;16314;16315 24668;24669;24670;24671 24670 4 GQLEALQVDGGRLEAELR SRLPDIFEAQIAGLRGQLEALQVDGGRLEA EALQVDGGRLEAELRSMQDVVEDFKNKYED R G Q L R S 2 2 0 1 0 2 3 3 0 0 4 0 0 0 0 0 0 0 0 1 0 0 18 1 1953.028 CON__Q3KNV1;P08729;B3KY79 CON__Q3KNV1 150 167 KRT7 Keratin, type II cytoskeletal 7 yes no 3 4.8597E-05 71.344 4 0.30537 0.41893 5.1776 4 Median 0.30537 0.41893 5.1776 4 0 Median NaN NaN NaN 0 0 Median 243830000 186540000 57289000 243830000 186540000 57289000 0 0 0 + 4597 968 4705 16316;16317;16318;16319 24672;24673;24674;24675;24676;24677;24678;24679 24676 8 GQLEQITGK RPQLLKNALQRAVERGQLEQITGKGASGTF QRAVERGQLEQITGKGASGTFQLKKSGEKP R G Q G K G 0 0 0 0 0 2 1 2 0 1 1 1 0 0 0 0 1 0 0 0 0 0 9 0 972.52401 Q5SSJ5;X6RGJ2;B0QZK4 Q5SSJ5 312 320 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.0030712 80.219 1 2 0.45128 0.72902 6.5948 3 Median 0.6293 0.80329 NaN 1 0 Median 0.45123 0.71857 2.0419 2 0 Median 218890000 143800000 75091000 71889000 42846000 29044000 147000000 100950000 46047000 4598 1565 4706 16320;16321;16322 24680;24681;24682;24683 24680 4 GQLESIVENIR GRGGSMLGTKRTLPKGQLESIVENIRIYGI TLPKGQLESIVENIRIYGIHALLVVGGFEA K G Q I R I 0 1 1 0 0 1 2 1 0 2 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1256.6725 P17858;Q7L2M7;B3KNQ7;Q9BSP4;Q7Z3R9;Q6MZK4;Q59GI2 P17858 475 485 PFKL;DKFZp686G1648;DKFZp686L2097 ATP-dependent 6-phosphofructokinase, liver type yes no 2 0.0031918 98.943 2 0.38955 0.5335 4.6626 2 Median 0.38955 0.5335 4.6626 2 0 Median NaN NaN NaN 0 0 Median 11898000 6479000 5419000 11898000 6479000 5419000 0 0 0 4599 1279 4707 16323;16324 24684;24685;24686 24685 3 GQNLLQTQDHAK LKSLPDTELMKDTARGQNLLQTQDHAKAPK TARGQNLLQTQDHAKAPKSEKGKITKMPCQ R G Q A K A 1 0 1 1 0 3 0 1 1 0 2 1 0 0 0 0 1 0 0 0 0 0 12 0 1351.6844 P46013 P46013 982 993 MKI67 Antigen KI-67 yes yes 2;3 1.2095E-66 251.64 8 4 0.95118 1.2539 14.502 12 Median 0.92516 1.203 5.5498 8 0 Median 1.0024 1.5854 2.195 4 0 Median 1565200000 793700000 771520000 1061400000 540270000 521080000 503870000 253430000 250440000 4600 1342 4708 16325;16326;16327;16328;16329;16330;16331;16332;16333;16334;16335;16336 24687;24688;24689;24690;24691;24692;24693;24694;24695;24696;24697;24698;24699;24700;24701;24702;24703;24704;24705;24706;24707;24708;24709 24696 23 GQNQPVLNITNK LAAGAKTYKMSMANRGQNQPVLNITNKQAF ANRGQNQPVLNITNKQAFITAQNHGYALDN R G Q N K Q 0 0 3 0 0 2 0 1 0 1 1 1 0 0 1 0 1 0 0 1 0 0 12 0 1324.7099 Q5R210;Q5R208;Q5R206;A8K134;A0A024R454;P31327;Q5R209;Q5R207;Q5R211 Q5R210 317 328 CPS1 Carbamoyl-phosphate synthase [ammonia], mitochondrial yes no 2 0.0099905 105.17 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 787880 787880 0 787880 787880 0 0 0 0 4601 116 4709 16337 24710 24710 1 GQPLPETLQLAVQGK HQLRAQILAYKMLARGQPLPETLQLAVQGK GQPLPETLQLAVQGKRTLPGLQQQQQQQQQ R G Q G K R 1 0 0 0 0 3 1 2 0 0 3 1 0 0 2 0 1 0 0 1 0 0 15 0 1577.8777 P51531;A0A0U1RQZ9;F6VDE0;Q6LC24;A0A0A0MT03;A0A1B0GWA8;A0A1B0GU54;Q56A76 P51531 195 209 SMARCA2 Probable global transcription activator SNF2L2 yes no 2 2.0975E-05 72.531 3 2 0.8901 1.1444 29.834 5 Median 0.76714 0.96938 10.71 3 0 Median 1.1489 1.7153 0.88152 2 0 Median 33022000 15858000 17164000 15177000 7918800 7258700 17845000 7939100 9905600 4602 1362 4710 16338;16339;16340;16341;16342 24711;24712;24713;24714;24715 24715 5 GQPVSTAVSAPNTVSSTPGQK VQPGAPQQVMTQIIRGQPVSTAVSAPNTVS AVSAPNTVSSTPGQKSLTSATSTSNIQSSA R G Q Q K S 2 0 1 0 0 2 0 2 0 0 0 1 0 0 3 4 3 0 0 3 0 0 21 0 2012.0174 E7ETD6;Q12830;F5GXF5;J3QQK4 E7ETD6 2086 2106 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.00015013 82.59 2 2 0.96532 1.4762 8.0933 3 Plateau 0.96532 1.2619 NaN 1 0 Median 0.96566 1.4403 3.7993 2 0 Median 20465000 10200000 10265000 5051300 2229200 2822100 15414000 7971100 7442500 4603 1015 4711 16343;16344;16345;16346 24716;24717;24718;24719;24720 24718 5 GQQELLYVVPFVAK TDLDVKSLLLEAYVKGQQELLYVVPFVAKV KGQQELLYVVPFVAKVLESSIRSVVFRPPN K G Q A K V 1 0 0 0 0 2 1 1 0 0 2 1 0 1 1 0 0 0 1 3 0 0 14 0 1589.8817 A5YKK6;H3BVC9;B4DYL7 A5YKK6 1228 1241 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 2 0.0064401 64.82 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1295900 1295900 0 1295900 1295900 0 0 0 0 4604 560 4712 16347 24721 24721 1 GQSEDPGSLLSLFR FPDIPGAVSANMTVKGQSEDPGSLLSLFRR KGQSEDPGSLLSLFRRLSDQRSKERSLLHG K G Q F R R 0 1 0 1 0 1 1 2 0 0 3 0 0 1 1 3 0 0 0 0 0 0 14 0 1504.7522 B4E2Z3;F5GZS6;J3KPF3;P08195;F5GZI0 B4E2Z3 392 405 SLC3A2 4F2 cell-surface antigen heavy chain yes no 2 1.2907E-09 99.539 1 1 2.4212 3.4135 131.35 2 Median 0.95631 1.3485 NaN 1 0 Median 6.1301 8.641 NaN 1 0 Median 14406000 2797400 11608000 2292600 1338900 953730 12113000 1458400 10655000 4605 889 4713 16348;16349 24722;24723 24723 2 GQSGIIYCFSQK DFIEDIVKLINGRYKGQSGIIYCFSQKDSE RYKGQSGIIYCFSQKDSEQVTVSLQNLGIH K G Q Q K D 0 0 0 0 1 2 0 2 0 2 0 1 0 1 0 2 0 0 1 0 0 0 12 0 1386.6602 A0A024RAV2;P46063 A0A024RAV2 314 325 RECQL ATP-dependent DNA helicase Q1 yes no 2 0.00030039 121.61 2 0.34985 0.44685 12.275 2 Median 0.34985 0.44685 12.275 2 0 Median NaN NaN NaN 0 0 Median 11372000 8590900 2780700 11372000 8590900 2780700 0 0 0 4606 250 4714 16350;16351 24724;24725;24726;24727 24725 4 GQSLGYAFAEFQEHEHALK CRVMRDLKGVHGNMKGQSLGYAFAEFQEHE GYAFAEFQEHEHALKALRLINNNPEIFGPL K G Q L K A 3 0 0 0 0 2 3 2 2 0 2 1 0 2 0 1 0 0 1 0 0 0 19 0 2161.0229 A0A024R753;Q9NW13 A0A024R753 537 555 RBM28 RNA-binding protein 28 yes no 3 3.7142E-05 90.872 3 1 1.0908 1.4087 7.5077 4 Median 1.1267 1.4216 9.0924 3 0 Median 0.91767 1.3959 NaN 1 0 Median 59627000 31851000 27777000 47796000 25163000 22633000 11831000 6687600 5143700 4607 169 4715 16352;16353;16354;16355 24728;24729;24730;24731;24732 24729 5 GQSPAGDGSPEPPTPR RLLPTKNNVRSAWYRGQSPAGDGSPEPPTP QSPAGDGSPEPPTPRYNTWVLQDTVLESHL R G Q P R Y 1 1 0 1 0 1 1 3 0 0 0 0 0 0 5 2 1 0 0 0 0 0 16 0 1548.7168 Q9H6R4;A0A0A0MRW6;B4DF80 Q9H6R4 281 296 NOL6 Nucleolar protein 6 yes no 2 1.0134E-24 167.22 4 3 0.87609 1.1932 6.2741 7 Median 0.88736 1.1753 1.8067 4 0 Linear 0.85234 1.3195 4.7185 3 0 Median 165180000 90453000 74725000 76994000 41008000 35986000 88183000 49445000 38738000 4608 1738 4716 16356;16357;16358;16359;16360;16361;16362 24733;24734;24735;24736;24737;24738;24739;24740;24741;24742;24743;24744;24745;24746 24733 14 GQTEHDEGMLEYLEDIIGCGR ILQGEVEQIAMMKPKGQTEHDEGMLEYLED EGMLEYLEDIIGCGRLNEPIKVLCRRVEIL K G Q G R L 0 1 0 2 1 1 4 4 1 2 2 0 1 0 0 0 1 0 1 0 0 0 21 0 2421.0577 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J578 Q9NTJ3 242 262 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 2.7012E-05 77.221 2 2 0.46783 0.72209 21.495 4 Median 0.44105 0.60515 30.953 2 0 Median 0.46783 0.73242 7.9778 2 0 Median 63933000 40233000 23700000 13738000 8426500 5311000 50195000 31806000 18389000 4609 1760 4717;4718 16363;16364;16365;16366 24747;24748;24749;24750 24749 806 2 GQTEQLELENSR SRVLEQVSAQLEECKGQTEQLELENSRLAT ECKGQTEQLELENSRLATDLRAQLQILANM K G Q S R L 0 1 1 0 0 2 3 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 12 0 1402.6688 A8K8N3;Q96R06;J3KTQ0;A4FUA2 A8K8N3 706 717 SPAG5 Sperm-associated antigen 5 yes no 2 0.018473 90.05 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4610 642 4719 16367 24751 24751 1 GQTGGDVNVEMDAAPGVDLSR AYLRKNHEEEMLALRGQTGGDVNVEMDAAP VNVEMDAAPGVDLSRILNEMRDQYEQMAEK R G Q S R I 2 1 1 3 0 1 1 4 0 0 1 0 1 0 1 1 1 0 0 3 0 0 21 0 2086.9589 CON__P08779;P08779;Q16195;CON__Q9Z2K1;CON__Q3ZAW8;K7ENW6 CON__P08779 264 284 KRT16;keratin Keratin, type I cytoskeletal 16 yes no 2 6.1568E-05 56.339 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13016000 13016000 0 0 0 0 13016000 13016000 0 + 4611 958 4720 16368 24752 24752 334 1 GQTHTLEDFQR CAGIAVASKTYNLKKGQTHTLEDFQRVLDV NLKKGQTHTLEDFQRVLDVNLMGTFNVIRL K G Q Q R V 0 1 0 1 0 2 1 1 1 0 1 0 0 1 0 0 2 0 0 0 0 0 11 0 1330.6266 A0A0S2Z410;Q99714;Q5H928;A0A0S2Z434 A0A0S2Z410 106 116 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2 0.0039876 77.288 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5938700 5938700 0 5938700 5938700 0 0 0 0 4612 458 4721 16369;16370 24753;24754 24754 2 GQVEVFALR SWLGEEPVAGVWSEKGQVEVFALRRLLQVV GVWSEKGQVEVFALRRLLQVVEEPQALAAF K G Q L R R 1 1 0 0 0 1 1 1 0 0 1 0 0 1 0 0 0 0 0 2 0 0 9 0 1017.5607 Q8TCJ8;Q8NCK5;B2RDP6;Q9BQ67;M0QX71 Q8TCJ8 173 181 DKFZp564C172;GRWD1 Glutamate-rich WD repeat-containing protein 1 yes no 2 0.0014916 83.265 3 0.60119 0.82586 NaN 1 Median 0.60119 0.82586 NaN 1 0 Median NaN NaN NaN 0 0 Median 12235000 9831200 2403700 12235000 9831200 2403700 0 0 0 4613 739 4722 16371;16372;16373 24755;24756;24757 24756 3 GQVEYLLK EEYVVEKVLDRRVVKGQVEYLLKWKGFSEE LDRRVVKGQVEYLLKWKGFSEEHNTWEPEK K G Q L K W 0 0 0 0 0 1 1 1 0 0 2 1 0 0 0 0 0 0 1 1 0 0 8 0 948.52803 V9HWG0;P45973;Q6I9T7;F8VNY3 V9HWG0 33 40 HEL25;CBX5 Chromobox protein homolog 5 yes no 1;2 0.0034288 118.32 2 1 0.44928 0.56844 52.564 3 Median 0.47263 0.61101 10.213 2 0 Median 0.15438 0.24797 NaN 1 0 Median 276040000 199620000 76415000 186340000 122280000 64059000 89697000 77341000 12356000 4614 1341 4723 16374;16375;16376 24758;24759;24760;24761 24758 4 GQVGGDVNVEMDAAPGVDLSR AYLKKNHEEEMNALRGQVGGDVNVEMDAAP VNVEMDAAPGVDLSRILNEMRDQYEKMAEK R G Q S R I 2 1 1 3 0 1 1 4 0 0 1 0 1 0 1 1 0 0 0 4 0 0 21 0 2084.9797 CON__P02533;P02533;A0A024R1X6 CON__P02533 262 282 KRT14 Keratin, type I cytoskeletal 14 no no 2 8.804E-30 172.42 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32937000 32937000 0 1275000 1275000 0 31662000 31662000 0 + 4615 949 4724;4725 16377;16378;16379 24762;24763;24764 24762 325 3 GQVLNSDELQELYEGLR NSVQFSNHTGYAHWKGQVLNSDELQELYEG VLNSDELQELYEGLRLNNMNKYDYVLTGYT K G Q L R L 0 1 1 1 0 2 3 2 0 0 4 0 0 0 0 1 0 0 1 1 0 0 17 0 1961.9694 G1UI32;F2Z2Y4;V9HWC3;O00764 G1UI32 54 70 PDXK;HEL-S-1a Pyridoxal kinase yes no 2 2.1927E-09 112.44 1 1 0.43858 0.58016 NaN 1 Median 0.43858 0.58016 NaN 1 0 Median NaN NaN NaN 0 0 Median 4566400 827790 3738600 1131300 827790 303510 3435100 0 3435100 4616 1051 4726 16380;16381 24765;24766 24765 1 GQVSEMAVLLIDPEPQIAALAK LVMTHLILKDMVKVKGQVSEMAVLLIDPEP VLLIDPEPQIAALAKNFFNELSHKGNAIYN K G Q A K N 4 0 0 1 0 2 2 1 0 2 3 1 1 0 2 1 0 0 0 2 0 0 22 0 2292.2399 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1129 1150 NCAPD2 Condensin complex subunit 1 yes no 2 6.9459E-26 142.54 4 0.78284 0.97899 9.0701 4 Median 0.78284 0.97899 9.0701 4 0 Median NaN NaN NaN 0 0 Median 31711000 17135000 14576000 31711000 17135000 14576000 0 0 0 4617 757 4727 16382;16383;16384;16385 24767;24768;24769;24770;24771;24772;24773;24774;24775;24776;24777 24768 269 11 GQVSESEDSITK PPKLRRRTFSLTEVRGQVSESEDSITKQIE EVRGQVSESEDSITKQIESLETEMEFRSAQ R G Q T K Q 0 0 0 1 0 1 2 1 0 1 0 1 0 0 0 3 1 0 0 1 0 0 12 0 1278.5939 Q59HG1;O95239;B3KNC0 Q59HG1 810 821 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 4.8316E-10 138.76 3 2 0.77887 1.0475 10.98 5 Median 1.0042 1.2412 12.626 3 0 Plateau 0.65367 1.0117 4.9215 2 0 Median 99670000 56141000 43529000 47931000 24754000 23177000 51739000 31387000 20352000 4618 1216 4728 16386;16387;16388;16389;16390 24778;24779;24780;24781;24782;24783;24784;24785;24786 24781 9 GQVTFLSIHPSGK DAKKWECLKSIKAHKGQVTFLSIHPSGKLA HKGQVTFLSIHPSGKLALSVGTDKTLRTWN K G Q G K L 0 0 0 0 0 1 0 2 1 1 1 1 0 1 1 2 1 0 0 1 0 0 13 0 1369.7354 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 124 136 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 2;3 1.3533E-11 142.07 7 3 1.0938 1.3586 18.241 10 Median 1.1167 1.4135 6.6173 7 0 Median 0.63846 0.96097 4.1938 3 0 Median 241570000 124940000 116630000 191340000 94234000 97101000 50233000 30709000 19524000 4619 478 4729 16391;16392;16393;16394;16395;16396;16397;16398;16399;16400 24787;24788;24789;24790;24791;24792;24793;24794;24795;24796;24797;24798;24799;24800;24801 24794 15 GQVVENNSVTEFSEEK SFEMTEFNQALEEIKGQVVENNSVTEFSEE QVVENNSVTEFSEEKNRTENYNRQDGQRVQ K G Q E K N 0 0 2 0 0 1 4 1 0 0 0 1 0 1 0 2 1 0 0 3 0 0 16 0 1794.8272 Q9BVS4;H0Y919;Q9NVB0 Q9BVS4 405 420 RIOK2 Serine/threonine-protein kinase RIO2 yes no 2 0.0027584 103.76 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 605530 0 605530 605530 0 605530 0 0 0 4620 1721 4730 16401 24802 24802 1 GRAPQVLVLAPTR PLIEKLHGELQDRKRGRAPQVLVLAPTREL KRGRAPQVLVLAPTRELANQVSKDFSDITK R G R T R E 2 2 0 0 0 1 0 1 0 0 2 0 0 0 2 0 1 0 0 2 0 0 13 1 1376.8252 Q9NR30 Q9NR30 258 270 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 8.7273E-05 77.912 5 2 0.61939 0.85898 11.705 7 Median 0.62588 0.86357 8.9202 5 0 Median 0.46795 0.7174 3.4877 2 0 Median 183610000 115450000 68164000 124330000 75787000 48544000 59279000 39659000 19620000 4621 1756 4731 16402;16403;16404;16405;16406;16407;16408 24803;24804;24805;24806;24807;24808;24809;24810;24811;24812 24805 10 GRAQADLALEK RGQQEREVARLTQERGRAQADLALEKAARA TQERGRAQADLALEKAARAELEMRLQNALN R G R E K A 3 1 0 1 0 1 1 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1170.6357 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q7Z757;Q9UPG3;Q4LE64;Q14980 Q4LE64 1014 1024 NUMA1;NuMA;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.040872 50.108 1 0.60898 0.8006 NaN 1 Median 0.60898 0.8006 NaN 1 0 Median NaN NaN NaN 0 0 Median 13071000 8096600 4974100 13071000 8096600 4974100 0 0 0 4622 148;1499 4732 16409 24813 24813 1 GRDDCGTFEDTGPLLQFDYK LGKNHSRKDGLSDERGRDDCGTFEDTGPLL GTFEDTGPLLQFDYKAVADRLLEMTSRKNT R G R Y K A 0 1 0 4 1 1 1 3 0 0 2 1 0 2 1 0 2 0 1 0 0 0 20 1 2333.027 Q14684;Q6PJM8 Q14684 282 301 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 3 4.6182E-17 138.82 4 2 0.72616 0.99995 12.754 6 Median 0.69896 0.92565 8.2518 4 0 Median 0.76977 1.1806 3.584 2 0 Median 82214000 45637000 36577000 64826000 36777000 28049000 17388000 8859900 8528000 4623 1493 4733 16410;16411;16412;16413;16414;16415 24814;24815;24816;24817;24818;24819;24820;24821;24822;24823;24824;24825 24815 12 GRDVESVQTPSK EPASPEQELDQNKGKGRDVESVQTPSKAVG KGKGRDVESVQTPSKAVGASFPLYEPAKMK K G R S K A 0 1 0 1 0 1 1 1 0 0 0 1 0 0 1 2 1 0 0 2 0 0 12 1 1301.6575 P46013 P46013 320 331 MKI67 Antigen KI-67 yes yes 2;3 3.8848E-44 197.07 6 4 0.94346 1.2589 21.801 10 Median 0.93175 1.2326 8.7511 6 0 Median 1.0974 1.782 18.008 4 0 Median 389350000 193470000 195890000 180670000 93722000 86947000 208680000 99744000 108940000 4624 1342 4734 16416;16417;16418;16419;16420;16421;16422;16423;16424;16425 24826;24827;24828;24829;24830;24831;24832;24833;24834;24835;24836;24837;24838;24839;24840;24841;24842;24843 24837 18 GRELPTAFDYVEFTR ADYCVSHMKPYVDGKGRELPTAFDYVEFTR GRELPTAFDYVEFTRSLFVN__________ K G R T R S 1 2 0 1 0 0 2 1 0 0 1 0 0 2 1 0 2 0 1 1 0 0 15 1 1799.8842 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1 Q13813 2453 2467 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 3 0.00021872 53.169 3 0.85543 1.1847 12.013 3 Median 0.85543 1.1847 12.013 3 0 Median NaN NaN NaN 0 0 Median 37077000 20371000 16705000 37077000 20371000 16705000 0 0 0 4625 1476 4735 16426;16427;16428 24844;24845;24846 24845 3 GRGHVQPIR ______________________________ NGRAKKGRGHVQPIRCTNCARCVPKDKAIK K G R I R C 0 2 0 0 0 1 0 2 1 1 0 0 0 0 1 0 0 0 0 1 0 0 9 1 1018.5784 A0A024RB14;P62854;Q5JNZ5;Q75MH1 A0A024RB14 14 22 RPS26;RPS26P11 40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1 yes no 3 0.0027635 66.27 1 0.88073 1.2012 NaN 1 Median 0.88073 1.2012 NaN 1 0 Median NaN NaN NaN 0 0 Median 112960000 56901000 56058000 112960000 56901000 56058000 0 0 0 4626 255 4736 16429 24847;24848 24847 2 GRGVTFLFPIQAK FSNFPISEETIKLLKGRGVTFLFPIQAKTF LKGRGVTFLFPIQAKTFHHVYSGKDLIAQA K G R A K T 1 1 0 0 0 1 0 2 0 1 1 1 0 2 1 0 1 0 0 1 0 0 13 1 1432.8191 Q9NR30 Q9NR30 203 215 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 0.0015167 51.276 4 0.56693 0.74228 22.587 4 Median 0.56693 0.74228 22.587 4 0 Median NaN NaN NaN 0 0 Median 65051000 38585000 26466000 65051000 38585000 26466000 0 0 0 4627 1756 4737 16430;16431;16432;16433 24849;24850;24851;24852 24851 4 GRHEVGALVR KELKLVFPGAQRMNRGRHEVGALVRACKAN QRMNRGRHEVGALVRACKANGVTDLLVVHE R G R V R A 1 2 0 0 0 0 1 2 1 0 1 0 0 0 0 0 0 0 0 2 0 0 10 1 1092.6152 H0Y714;Q96G21;E7ENR5;B8ZZ47;B9A008 H0Y714 106 115 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 3 0.00013779 111.27 3 0.94715 1.2843 4.4026 3 Plateau 0.94715 1.2843 4.4026 3 0 Plateau NaN NaN NaN 0 0 Median 85107000 40427000 44680000 85107000 40427000 44680000 0 0 0 4628 1094 4738 16434;16435;16436 24853;24854;24855;24856;24857;24858 24856 6 GRIPLLLTSLSFK VVKKWLEVEIAPDIRGRIPLLLTSLSFKVL IRGRIPLLLTSLSFKVLKHPDKKFRVGQAL R G R F K V 0 1 0 0 0 0 0 1 0 1 4 1 0 1 1 2 1 0 0 0 0 0 13 1 1443.8813 Q14690 Q14690 1176 1188 PDCD11 Protein RRP5 homolog yes yes 2;3 4.0641E-08 151.13 6 2 1.0413 1.3576 24.266 7 Median 1.043 1.3578 25.592 6 0 Median 0.77514 1.1965 NaN 1 0 Median 91926000 45626000 46300000 76327000 34371000 41957000 15599000 11255000 4343200 4629 1494 4739 16437;16438;16439;16440;16441;16442;16443;16444 24859;24860;24861;24862;24863;24864;24865;24866;24867;24868;24869;24870;24871 24860 13 GRLDSELR INNLRRQLDSIVGERGRLDSELRGMQDLVE DSIVGERGRLDSELRGMQDLVEDFKNKYED R G R L R G 0 2 0 1 0 0 1 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 8 1 944.50394 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;B4DRY0;CON__P04259;B4DKV4;CON__P13647;P13647;B4E1T1;F8W0C6;CON__Q5XKE5;Q5XKE5 B4DRR0 204 211 KRT6A;KRT6C;KRT5;KRT79 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 79 no no 2 0.021437 82.426 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42027000 42027000 0 42027000 42027000 0 0 0 0 + 4630 459;953;961;972 4740 16445 24872 24872 1 GRLPLLAVCDYK AVVQLKPRHPAHPMRGRLPLLAVCDYKQVE PMRGRLPLLAVCDYKQVEVTVHKGDECQLV R G R Y K Q 1 1 0 1 1 0 0 1 0 0 3 1 0 0 1 0 0 0 1 1 0 0 12 1 1403.7595 Q15149 Q15149 942 953 PLEC Plectin yes yes 2;3 0.0013052 56.951 3 0.94524 1.2063 NaN 1 Median 0.94524 1.2063 NaN 1 0 Median NaN NaN NaN 0 0 Median 17690000 12981000 4708500 17690000 12981000 4708500 0 0 0 4631 1507 4741 16446;16447;16448 24873;24874;24875 24875 3 GRNEQFPVLDHLLSIIK QMVGFYIKQKKTRSKGRNEQFPVLDHLLSI NEQFPVLDHLLSIIKLPPNKDTTYLSQSWA K G R I K L 0 1 1 1 0 1 1 1 1 2 3 1 0 1 1 1 0 0 0 1 0 0 17 1 1978.1 O75691 O75691 489 505 UTP20 Small subunit processome component 20 homolog yes yes 3 0.049434 61.495 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1688900 0 1688900 1688900 0 1688900 0 0 0 4632 1207 4742 16449 24876 24876 1 GRPDPYAYIPLNR AEYKAKKAKGDVKKKGRPDPYAYIPLNRSK KKGRPDPYAYIPLNRSKLNRRKKMKLQGQF K G R N R S 1 2 1 1 0 0 0 1 0 1 1 0 0 0 3 0 0 0 2 0 0 0 13 1 1530.7943 B3KMR5;Q5JTH9;B3KY97;B3KPQ2 B3KMR5 1246 1258 RRP12 RRP12-like protein yes no 3 0.00037913 61.532 3 2 0.60014 0.84349 27.334 5 Median 0.91589 1.2285 25.529 3 0 Median 0.53162 0.75955 14.824 2 0 Median 65929000 39389000 26540000 46587000 26769000 19819000 19342000 12621000 6720800 4633 756 4743 16450;16451;16452;16453;16454 24877;24878;24879;24880;24881;24882 24880 6 GRPGSGTSGVDSLSNFIESVK MQKTIEMKRTDRVGRGRPGSGTSGVDSLSN TSGVDSLSNFIESVKEEASNSGYGSSINQD R G R V K E 0 1 1 1 0 0 1 4 0 1 1 1 0 1 1 5 1 0 0 2 0 0 21 1 2093.0389 B9ZVT1;Q8IXT5;E5RHG1;E5RJ83;E5RJV8 B9ZVT1 94 114 RBM12B RNA-binding protein 12B yes no 3 9.4296E-08 91.166 2 0.45235 0.5956 0.8009 2 Median 0.45235 0.5956 0.8009 2 0 Median NaN NaN NaN 0 0 Median 13095000 9413000 3682200 13095000 9413000 3682200 0 0 0 4634 931 4744 16455;16456 24883;24884;24885 24885 3 GRPISHSTTEDLK FHDKKFKLNYAVDKRGRPISHSTTEDLKRF KRGRPISHSTTEDLKRFYDLSDSDSNLSGE R G R L K R 0 1 0 1 0 0 1 1 1 1 1 1 0 0 1 2 2 0 0 0 0 0 13 1 1439.7369 Q9H501;Q05C10;Q8IWH6;Q3SWV1;Q6P6H6 Q9H501 57 69 ESF1 ESF1 homolog yes no 3 0.0030481 31.526 1 0.56514 0.78231 NaN 1 Median NaN NaN NaN 0 0 Median 0.56514 0.78231 NaN 1 0 Median 979200 543810 435390 0 0 0 979200 543810 435390 4635 1734 4745 16457 24886 24886 1 GRPPTFPGVK DKIKKKDSKSIEKKRGRPPTFPGVKIKITH IEKKRGRPPTFPGVKIKITHGKDISELPKG R G R V K I 0 1 0 0 0 0 0 2 0 0 0 1 0 1 3 0 1 0 0 1 0 0 10 1 1054.5924 Q03164;E9PR05;Q9UPD0;Q9Y6P1 Q03164 223 232 KMT2A;MLL Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 0.036528 54.416 2 0.84107 1.2874 0.37258 2 Median NaN NaN NaN 0 0 Median 0.84107 1.2874 0.37258 2 0 Median 15403000 7928400 7474500 0 0 0 15403000 7928400 7474500 4636 1438 4746 16458;16459 24887;24888 24887 2 GRPSLYVQR LLTKLSLITAPRRERGRPSLYVQRDIVQET APRRERGRPSLYVQRDIVQETQREEDHRRE R G R Q R D 0 2 0 0 0 1 0 1 0 0 1 0 0 0 1 1 0 0 1 1 0 0 9 1 1074.5934 Q8IVT2 Q8IVT2 345 353 MISP Mitotic interactor and substrate of PLK1 yes yes 3 0.023628 29.743 1 0.99893 1.2518 NaN 1 Median 0.99893 1.2518 NaN 1 0 Median NaN NaN NaN 0 0 Median 4568600 2320200 2248400 4568600 2320200 2248400 0 0 0 4637 1624 4747 16460 24889 24889 1 GRPYSVPPCVEEALGQK SLDPFDSLESKPFKKGRPYSVPPCVEEALG PYSVPPCVEEALGQKRKRKGAAKLQDFHQW K G R Q K R 1 1 0 0 1 1 2 2 0 0 1 1 0 0 3 1 0 0 1 2 0 0 17 1 1885.9356 A0A0A6YYG7;Q6IBW4 A0A0A6YYG7 334 350 NCAPH2 Condensin-2 complex subunit H2 yes no 3 7.4435E-06 88.951 4 0.89391 1.1958 19.626 4 Median 0.89391 1.1958 19.626 4 0 Median NaN NaN NaN 0 0 Median 60789000 30991000 29798000 60789000 30991000 29798000 0 0 0 4638 406 4748 16461;16462;16463;16464 24890;24891;24892;24893;24894;24895 24894 6 GRPYTLSVALPGSILDNAQSPELR KRLEEEEAAAEKEDRGRPYTLSVALPGSIL LPGSILDNAQSPELRTYLAGQIARACAIFC R G R L R T 2 2 1 1 0 1 1 2 0 1 4 0 0 0 3 3 1 0 1 1 0 0 24 1 2553.3551 Q5T280 Q5T280 70 93 C9orf114 Putative methyltransferase C9orf114 yes yes 3 3.3922E-06 58.054 3 1 0.79567 1.0998 30.665 3 Median 0.82258 1.1158 2.0523 2 0 Median 0.44805 0.65644 NaN 1 0 Median 43611000 27264000 16347000 27462000 17184000 10278000 16149000 10079000 6069500 4639 1567 4749 16465;16466;16467;16468 24896;24897;24898;24899 24898 4 GRRPVLPR EGVPDEEGWVKVTRRGRRPVLPRTEAASLR WVKVTRRGRRPVLPRTEAASLRVLERERRK R G R P R T 0 3 0 0 0 0 0 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 8 2 949.59337 Q9Y3A4;Q9NSQ0 Q9Y3A4 210 217 RRP7A;RRP7BP Ribosomal RNA-processing protein 7 homolog A;Putative ribosomal RNA-processing protein 7 homolog B yes no 3 0.0093477 96.19 1 0.84649 1.1059 NaN 1 Median 0.84649 1.1059 NaN 1 0 Median NaN NaN NaN 0 0 Median 8223200 4309400 3913800 8223200 4309400 3913800 0 0 0 4640 1815 4750 16469 24900 24900 1 GRTPSAFPQTPAAPPATLGEGSADTEDR LPGHAAKTLPGGAGKGRTPSAFPQTPAAPP PPATLGEGSADTEDRKLPAPGADVKVHRAR K G R D R K 5 2 0 2 0 1 2 3 0 0 1 0 0 1 5 2 4 0 0 0 0 0 28 1 2796.3315 A0A1B0GV09;Q9H9B1;A0A1B0GU48;A0A1B0GV89;A0A0D9SFX4;A0A1B0GW79;A0PJE0;A0A0D9SEQ1;A0A1B0GVZ8;A0A1B0GUD1 A0A1B0GV09 131 158 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 3 1.1433E-11 89.879 2 0.56624 0.75141 7.9864 2 Median 0.56624 0.75141 7.9864 2 0 Median NaN NaN NaN 0 0 Median 10239000 6037700 4201300 10239000 6037700 4201300 0 0 0 4641 518 4751 16470;16471 24901;24902;24903 24902 3 GRVFEVSLADLQNDEVAFR VTRTQGTKIASDGLKGRVFEVSLADLQNDE EVSLADLQNDEVAFRKFKLITEDVQGKNCL K G R F R K 2 2 1 2 0 1 2 1 0 0 2 0 0 2 0 1 0 0 0 3 0 0 19 1 2164.0913 Q6NXR8;P61247;A8K4W0;B7Z3M5;H0Y8L7;E9PFI5;D6RG13;D6RAT0;D6RB09;D6RI02;D6RAS7;D6RED7;D6RGE0 Q6NXR8 64 82 RPS3A 40S ribosomal protein S3a yes no 3 9.3234E-24 124.08 2 0.68644 0.93401 3.0984 2 Median 0.68644 0.93401 3.0984 2 0 Median NaN NaN NaN 0 0 Median 46957000 26258000 20700000 46957000 26258000 20700000 0 0 0 4642 1393 4752 16472;16473 24904;24905;24906;24907;24908 24907 5 GRVFEVSLADLQNDEVAFRK VTRTQGTKIASDGLKGRVFEVSLADLQNDE VSLADLQNDEVAFRKFKLITEDVQGKNCLT K G R R K F 2 2 1 2 0 1 2 1 0 0 2 1 0 2 0 1 0 0 0 3 0 0 20 2 2292.1862 Q6NXR8;P61247;A8K4W0;B7Z3M5;H0Y8L7;E9PFI5;D6RG13;D6RAT0;D6RB09;D6RI02;D6RAS7;D6RED7;D6RGE0 Q6NXR8 64 83 RPS3A 40S ribosomal protein S3a yes no 3;4 1.3622E-40 180.03 6 1 0.81801 0.99891 8.3151 6 Median 0.81801 0.99891 8.3151 6 0 Median NaN NaN NaN 0 0 Median 132350000 74078000 58271000 128080000 69806000 58271000 4271900 4271900 0 4643 1393 4753 16474;16475;16476;16477;16478;16479;16480 24909;24910;24911;24912;24913;24914;24915;24916;24917;24918;24919;24920 24914 12 GRVQGLLEEEAAAR RYLGGSGGAGGRLTRGRVQGLLEEEAAARG RGRVQGLLEEEAAARGRLERTRLGALALPR R G R A R G 3 2 0 0 0 1 3 2 0 0 2 0 0 0 0 0 0 0 0 1 0 0 14 1 1497.79 Q6SPF0;E9PIW9 Q6SPF0 271 284 SAMD1 Atherin yes no 3 0.0083155 45.614 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2560200 0 2560200 0 0 0 2560200 0 2560200 4644 1599 4754 16481 24921 24921 1 GSAFAIGSDGLCCQSR AFSVLNKWQMNPYDRGSAFAIGSDGLCCQS SAFAIGSDGLCCQSREVKEWHGCRATKGLM R G S S R E 2 1 0 1 2 1 0 3 0 1 1 0 0 1 0 3 0 0 0 0 0 0 16 0 1684.7297 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 18 33 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 2.2893E-09 98.337 4 2 0.68675 0.92964 23.33 4 Median 0.68675 0.92964 23.33 4 0 Median NaN NaN NaN 0 0 Median 49682000 30552000 19130000 45429000 26298000 19130000 4253600 4253600 0 4645 378 4755 16482;16483;16484;16485;16486;16487 24922;24923;24924;24925;24926;24927;24928;24929;24930;24931 24928 10 GSAITGPVAK EDNAGVIVNNKGEMKGSAITGPVAKECADL KGEMKGSAITGPVAKECADLWPRIASNAGS K G S A K E 2 0 0 0 0 0 0 2 0 1 0 1 0 0 1 1 1 0 0 1 0 0 10 0 899.50763 Q9BTQ7;A0A024R1Q8;P62829;J3KTJ3 Q9BTQ7 108 117 RPL23 60S ribosomal protein L23 yes no 2 1.1577E-07 99.442 5 3 0.82463 1.0875 8.1243 4 Median 0.8667 1.1546 8.418 3 0 Median 0.63963 1.0243 NaN 1 0 Median 1759400000 827640000 931780000 1434200000 586850000 847370000 325200000 240800000 84407000 4646 63 4756 16488;16489;16490;16491;16492;16493;16494;16495 24932;24933;24934;24935;24936;24937;24938;24939;24940;24941;24942;24943 24937 12 GSALAALHCGRPPESPVNYGSPPSIADTLFSR SLLRTNKSCKHVVWKGSALAALHCGRPPES NYGSPPSIADTLFSRKLNGKYRLERLVPTA K G S S R K 4 2 1 1 1 0 1 3 1 1 3 0 0 1 5 5 1 0 1 1 0 0 32 1 3323.6357 Q8WWQ0 Q8WWQ0 122 153 PHIP PH-interacting protein yes yes 3;4 1.294E-20 105.77 3 0.56799 0.78664 29.582 3 Median 0.56799 0.78664 29.582 3 0 Median NaN NaN NaN 0 0 Median 253880000 169680000 84199000 253880000 169680000 84199000 0 0 0 4647 1668 4757 16496;16497;16498 24944;24945;24946;24947;24948 24946 5 GSATNYITR ______________________________ KKKYERGSATNYITRNKARKKLQLSLADFR R G S T R N 1 1 1 0 0 0 0 1 0 1 0 0 0 0 0 1 2 0 1 0 0 0 9 0 981.48796 B5MCF9;B2RDF2;O00541 B5MCF9 12 20 PES1 Pescadillo homolog yes no 2 1.339E-25 150.4 4 4 0.68659 0.94032 NaN 1 Median 0.68659 0.94032 NaN 1 0 Median NaN NaN NaN 0 0 Median 139950000 27595000 112360000 96750000 27595000 69155000 43203000 0 43203000 4648 735 4758 16499;16500;16501;16502;16503;16504;16505;16506 24949;24950;24951;24952;24953;24954;24955;24956 24954 8 GSAVHQLSEELR PDPDTGLYMLQLAGRGSAVHQLSEELRCAL AGRGSAVHQLSEELRCALRDARVTPGSGAL R G S L R C 1 1 0 0 0 1 2 1 1 0 2 0 0 0 0 2 0 0 0 1 0 0 12 0 1324.6735 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 2421 2432 EPPK1 Epiplakin no no 2;3 0.00093482 103.21 4 1 0.65442 0.88503 106.92 4 Median 0.65409 0.8723 5.645 3 0 Median 5.1407 7.2624 NaN 1 0 Median 55823000 33595000 22228000 48266000 32126000 16140000 7557800 1469800 6087900 4649 373;1386 4759 16507;16508;16509;16510;16511 24957;24958;24959;24960;24961;24962 24958 6 GSCFLINTADR TSNTTAIKSIEFARKGSCFLINTADRIIRV FARKGSCFLINTADRIIRVYDGREILTCGR K G S D R I 1 1 1 1 1 0 0 1 0 1 1 0 0 1 0 1 1 0 0 0 0 0 11 0 1252.587 B4DLF8;A0A024R9B5;B4DMM7;Q15291 B4DLF8 83 93 RBBP5 Retinoblastoma-binding protein 5 yes no 2 0.00075957 76.943 2 0.64949 0.90767 NaN 1 Median 0.64949 0.90767 NaN 1 0 Median NaN NaN NaN 0 0 Median 6515300 3069900 3445400 6515300 3069900 3445400 0 0 0 4650 215 4760 16512;16513 24963;24964;24965 24965 3 GSCGIGGGIGGGSSR MTTCSRQFTSSSSMKGSCGIGGGIGGGSSR GSCGIGGGIGGGSSRISSVLAGGSCRAPST K G S S R I 0 1 0 0 1 0 0 8 0 2 0 0 0 0 0 3 0 0 0 0 0 0 15 0 1277.5782 CON__P02533;P02533;K7ENV3;CON__P08779;P08779 CON__P02533 16 30 KRT14;KRT16 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16 no no 2 4.508E-05 78.324 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70790000 70790000 0 15842000 15842000 0 54948000 54948000 0 + 4651 949;958 4761 16514;16515;16516 24966;24967;24968 24966 3 GSDFDCELR LESDAVECLNYQHYKGSDFDCELRLLIHQS NYQHYKGSDFDCELRLLIHQSLAGGIIGVK K G S L R L 0 1 0 2 1 0 1 1 0 0 1 0 0 1 0 1 0 0 0 0 0 0 9 0 1097.4448 A0A024R228;P61978;B4DUQ1;Q5EC54;Q5T6W2;B4DFF1 A0A024R228 140 148 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 2 0.00036888 122.18 1 1 0.64075 0.84501 201.19 2 Median 0.15087 0.20372 NaN 1 0 Median 2.7212 3.5051 NaN 1 0 Median 20834000 12502000 8332500 17070000 11408000 5662100 3763600 1093300 2670300 4652 77 4762 16517;16518 24969;24970 24969 2 GSDSEDGEFEIQAEDDAR KKGLRKRRGAASQARGSDSEDGEFEIQAED SEDGEFEIQAEDDARARKLGPGRPLPTFPT R G S A R A 2 1 0 4 0 1 4 2 0 1 0 0 0 1 0 2 0 0 0 0 0 0 18 0 1968.7821 Q8TDD1;H0YHZ9 Q8TDD1 38 55 DDX54 ATP-dependent RNA helicase DDX54 yes no 2 1.666E-84 244.46 3 2 0.61167 0.86713 26.736 5 Median 0.70995 0.96846 9.4536 3 0 Median 0.4124 0.59916 6.2296 2 0 Median 27492000 16750000 10742000 13138000 6977100 6161200 14354000 9772600 4581200 4653 1658 4763 16519;16520;16521;16522;16523 24971;24972;24973;24974;24975;24976;24977;24978;24979 24974 9 GSDVASAQLPNFR PFQDGYDLTIGTSERGSDVASAQLPNFRHA ERGSDVASAQLPNFRHALVVFGGLQGLEAG R G S F R H 2 1 1 1 0 1 0 1 0 0 1 0 0 1 1 2 0 0 0 1 0 0 13 0 1360.6735 Q5T280;R4GNG4 Q5T280 293 305 C9orf114 Putative methyltransferase C9orf114 yes no 2 0.00048084 77.379 3 2 0.62528 0.87077 45.221 3 Median 0.43839 0.60408 51.714 2 0 Median 0.68991 0.95766 NaN 1 0 Median 23870000 18271000 5598700 8562100 6222400 2339700 15308000 12049000 3259100 4654 1567 4764 16524;16525;16526;16527;16528 24980;24981;24982;24983;24984;24985 24982 6 GSEASSEAGVVTTR RIGLRVHFNLPEDDKGSEASSEAGVVTTRQ KGSEASSEAGVVTTRQTRPDSFQERFNGQA K G S T R Q 2 1 0 0 0 0 2 2 0 0 0 0 0 0 0 3 2 0 0 2 0 0 14 0 1349.6423 A0A087WX60;Q86TC9;A5PKT7 A0A087WX60 314 327 MYPN Myopalladin yes no 2 0.0045126 58.676 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4655 356 4765 16529 24986 24986 1 GSEGKPSLTLPASAPGPEEALTTVTVAPAPR PRFRRLKQERENAARGSEGKPSLTLPASAP PEEALTTVTVAPAPRRAAAKSPDLSNQNSD R G S P R R 5 1 0 0 0 0 3 3 0 0 3 1 0 0 6 3 4 0 0 2 0 0 31 1 3000.5768 P48634;B4DLY2 P48634 1270 1300 PRRC2A Protein PRRC2A yes no 3 2.7083E-08 76.762 4 1.1079 1.4659 22.444 4 Median 1.1079 1.4659 22.444 4 0 Median NaN NaN NaN 0 0 Median 38747000 18618000 20129000 38747000 18618000 20129000 0 0 0 4656 1348 4766 16530;16531;16532;16533 24987;24988;24989;24990;24991;24992;24993;24994;24995;24996 24993 10 GSEHQAIVQHLEK LHQDLVNRKARKLRKGSEHQAIVQHLEKSF RKGSEHQAIVQHLEKSFAIASLVETGHLAA K G S E K S 1 0 0 0 0 2 2 1 2 1 1 1 0 0 0 1 0 0 0 1 0 0 13 0 1474.7528 Q14690;B4DH82 Q14690 925 937 PDCD11 Protein RRP5 homolog yes no 2;3 0.0061588 42.789 1 2 0.70825 0.9697 49.68 3 Median 1.7456 2.1744 NaN 1 0 Median 0.67171 0.92352 6.9004 2 0 Median 25790000 13111000 12679000 16489000 7575900 8913100 9300600 5535000 3765700 4657 1494 4767 16534;16535;16536 24997;24998;24999;25000;25001 24997 5 GSEIQSSSALYPVGR EKENKRESRKEKRKKGSEIQSSSALYPVGR GSEIQSSSALYPVGRVSKEKVVGEDVATSS K G S G R V 1 1 0 0 0 1 1 2 0 1 1 0 0 0 1 4 0 0 1 1 0 0 15 0 1549.7736 Q03164;E9PR05 Q03164 896 910 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 3.2917E-16 138.42 3 2 0.88313 1.194 8.8026 5 Median 0.88313 1.194 11.985 3 0 Median 0.86222 1.2249 4.6156 2 0 Median 37916000 19455000 18461000 15562000 7902600 7659100 22355000 11553000 10802000 4658 1438 4768 16537;16538;16539;16540;16541 25002;25003;25004;25005;25006;25007;25008;25009 25003 8 GSELEITLTR SPSDKVLIQEKTQLKGSELEITLTRGSSLP KTQLKGSELEITLTRGSSLPGPACAYVNLN K G S T R G 0 1 0 0 0 0 2 1 0 1 2 0 0 0 0 1 2 0 0 0 0 0 10 0 1117.5979 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z355;Q7Z3U5;B4DVX2;Q6P0M4;Q7L4K8;Q9P1N9;Q5TCC6 Q59G75 1079 1088 IARS;DKFZp686L17145;DKFZp686L0869 Isoleucine--tRNA ligase, cytoplasmic yes no 2 3.6647E-07 149.82 1 1 3.244 4.4206 NaN 1 Median 3.244 4.4206 NaN 1 0 Median NaN NaN NaN 0 0 Median 13613000 2609600 11003000 5293400 2609600 2683900 8319300 0 8319300 4659 1334 4769 16542;16543 25010;25011 25010 2 GSELQLPFQACLK PLEVHLLDFPNIVIKGSELQLPFQACLKVE IKGSELQLPFQACLKVEKFGDLILKATEPQ K G S L K V 1 0 0 0 1 2 1 1 0 0 3 1 0 1 1 1 0 0 0 0 0 0 13 0 1489.7599 Q6P2Q9;B4DK16;Q6JH02;Q6JH03 Q6P2Q9 1886 1898 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 8.4814E-13 163.38 3 0.61507 0.78422 13.055 2 Median 0.61507 0.78422 13.055 2 0 Median NaN NaN NaN 0 0 Median 14299000 9125700 5172900 14299000 9125700 5172900 0 0 0 4660 1592 4770 16544;16545;16546 25012;25013;25014;25015 25014 4 GSETGSETHESDLAPSDK EGSEYEEIPKRRRQRGSETGSETHESDLAP TGSETHESDLAPSDKEAPTPKEGTLTQVPL R G S D K E 1 0 0 2 0 0 3 2 1 0 1 1 0 0 1 4 2 0 0 0 0 0 18 0 1845.7864 P48634;B4DLY2 P48634 1105 1122 PRRC2A Protein PRRC2A yes no 3 0.019802 43.794 1 0.92827 1.1914 NaN 1 Median 0.92827 1.1914 NaN 1 0 Median NaN NaN NaN 0 0 Median 1786700 949630 837030 1786700 949630 837030 0 0 0 4661 1348 4771 16547 25016 25016 1 GSFEGTSQNLPK NKRPLPATSWEDMKKGSFEGTSQNLPKRKQ MKKGSFEGTSQNLPKRKQLEANRLSLKNDA K G S P K R 0 0 1 0 0 1 1 2 0 0 1 1 0 1 1 2 1 0 0 0 0 0 12 0 1263.6095 A0A024RAL5;Q8N567 A0A024RAL5 27 38 ZCCHC9 Zinc finger CCHC domain-containing protein 9 yes no 2 0.0004998 73.067 1 2 1.2776 1.6199 10.43 3 Plateau 1.2776 1.6199 NaN 1 0 Median 0.98165 1.3722 5.8353 2 0 Median 17095000 8004100 9090700 7616300 3638700 3977600 9478500 4365400 5113100 4662 245 4772 16548;16549;16550 25017;25018;25019 25019 3 GSFSDTGLGDGK EQKQTNTDKEKIKEKGSFSDTGLGDGKMKS KEKGSFSDTGLGDGKMKSDSFAPKTDSEKP K G S G K M 0 0 0 2 0 0 0 4 0 0 1 1 0 1 0 2 1 0 0 0 0 0 12 0 1139.5095 Q9Y2W1 Q9Y2W1 376 387 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2 0.0014405 65.278 3 2 0.60902 0.78417 21.802 5 Median 0.50172 0.63979 14.099 3 0 Median 0.63126 0.95376 0.91332 2 0 Median 70464000 44970000 25493000 42616000 27620000 14996000 27848000 17350000 10497000 4663 1809 4773 16551;16552;16553;16554;16555 25020;25021;25022;25023;25024;25025;25026 25024 7 GSGAGVGTTLTPLPPPK PPDCPVGGPLTFPGRGSGAGVGTTLTPLPP GAGVGTTLTPLPPPKMPPPTILSTVPRQMF R G S P K M 1 0 0 0 0 0 0 4 0 0 2 1 0 0 4 1 3 0 0 1 0 0 17 0 1548.8512 Q8NBZ0;Q8TET7;J3KNE2;H3BNM4 Q8NBZ0 191 207 INO80E;FLJ00079 INO80 complex subunit E yes no 2 0.00013743 97.463 2 0.60822 0.77506 0.92754 2 Median 0.60822 0.77506 0.92754 2 0 Median NaN NaN NaN 0 0 Median 9306900 5545200 3761800 9306900 5545200 3761800 0 0 0 4664 1650 4774 16556;16557 25027;25028 25027 2 GSGGLGGACGGAGFGSR VSRSGFSSVSVSRSRGSGGLGGACGGAGFG GGLGGACGGAGFGSRSLYGLGGSKRISIGG R G S S R S 2 1 0 0 1 0 0 9 0 0 1 0 0 1 0 2 0 0 0 0 0 0 17 0 1423.6263 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DRY0;A0A0S2Z427;CON__P04259;B4DKV4 B4DRR0 43 59 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 0.0027099 95.428 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6507100 6507100 0 6507100 6507100 0 0 0 0 + 4665 459;953 4775 16558;16559 25029;25030 25029 2 GSGQGDSLYPVGYLDK ELSGPGGGSRGRSDRGSGQGDSLYPVGYLD SGQGDSLYPVGYLDKQVPDTSVQETDRILV R G S D K Q 0 0 0 2 0 1 0 4 0 0 2 1 0 0 1 2 0 0 2 1 0 0 16 0 1654.7839 S4R329;H0YK61;H0YNK0;H0YNK8;H0YLP8;A0A0S2Z598;A0A024R9N3;Q5J8M3 S4R329 35 50 EMC4;TMEM85 ER membrane protein complex subunit 4 yes no 2 0.048148 26.124 1 0.6913 0.95535 NaN 1 Median NaN NaN NaN 0 0 Median 0.6913 0.95535 NaN 1 0 Median 4884000 2109600 2774400 0 0 0 4884000 2109600 2774400 4666 227 4776 16560 25031 25031 1 GSGSGQSPSSGQHGTGFGR QHSSGSGQSPGHGQRGSGSGQSPSSGQHGT GQSPSSGQHGTGFGRSSSSGPYVSGSGYSS R G S G R S 0 1 0 0 0 2 0 7 1 0 0 0 0 1 1 5 1 0 0 0 0 0 19 0 1746.767 CON__Q86YZ3;Q86YZ3 CON__Q86YZ3 430 448 HRNR Hornerin yes no 3 0.046078 34.202 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1146500 1146500 0 0 0 0 1146500 1146500 0 + 4667 973 4777 16561 25032 25032 1 GSGSQSSVPSVDQFTGVGIR SQSQDEGEGSGESERGSGSQSSVPSVDQFT SSVPSVDQFTGVGIRVSFTGKQGEMREMQQ R G S I R V 0 1 0 1 0 2 0 4 0 1 0 0 0 1 1 5 1 0 0 3 0 0 20 0 1963.9599 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 1080 1099 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 1.9214E-15 127.3 4 0.44296 0.61718 11.45 4 Median 0.44296 0.61718 11.45 4 0 Median NaN NaN NaN 0 0 Median 29888000 19985000 9903500 29888000 19985000 9903500 0 0 0 4668 663 4778 16562;16563;16564;16565 25033;25034;25035;25036;25037;25038;25039;25040 25033 8 GSGTAEVELKK ALDTKGPEIRTGLIKGSGTAEVELKKGATL GLIKGSGTAEVELKKGATLKITLDNAYMEK K G S K K G 1 0 0 0 0 0 2 2 0 0 1 2 0 0 0 1 1 0 0 1 0 0 11 1 1117.5979 V9HWB8;P14618;H3BTN5;A0A024R5Z9;B4DRT3;A0A024R609;H3BQ34;H3BT25;H3BUW1;H3BTJ2 V9HWB8 126 136 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 2 0.014964 106.88 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7192000 7192000 0 7192000 7192000 0 0 0 0 4669 1267 4779 16566 25041 25041 1 GSGVTTYSVHPGTVQSELVR LANILFTQELARRLKGSGVTTYSVHPGTVQ TYSVHPGTVQSELVRHSSFMRWMWWLFSFF K G S V R H 0 1 0 0 0 1 1 3 1 0 1 0 0 0 1 3 3 0 1 4 0 0 20 0 2073.0491 A0A0S2Z583;Q8TC12;G3V2G6;H0YIZ8;B3KQ19 A0A0S2Z583 222 241 RDH11 Retinol dehydrogenase 11 yes no 3 0.00029068 70.114 1 0.66364 0.88374 NaN 1 Median 0.66364 0.88374 NaN 1 0 Median NaN NaN NaN 0 0 Median 3569400 2583000 986380 3569400 2583000 986380 0 0 0 4670 476 4780 16567 25042 25042 1 GSIFVVFDSIESAK VLNIQMRRTLHKAFKGSIFVVFDSIESAKK KGSIFVVFDSIESAKKFVETPGQKYKETDL K G S A K K 1 0 0 1 0 0 1 1 0 2 0 1 0 2 0 3 0 0 0 2 0 0 14 0 1497.7715 B5BUB5;P05455;Q14730;E9PGX9;E7ERC4 B5BUB5 152 165 SSB Lupus La protein yes no 2 0.0032744 110.08 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1143000 1143000 0 1143000 1143000 0 0 0 0 4671 897 4781 16568 25043 25043 1 GSIIISPCVVCR GPFVMRSTCRRCGGRGSIIISPCVVCRGAG GGRGSIIISPCVVCRGAGQAKQKKRVMIPV R G S C R G 0 1 0 0 2 0 0 1 0 3 0 0 0 0 1 2 0 0 0 2 0 0 12 0 1359.7003 B3KM81;Q59E88;Q53G26;Q96EY1 B3KM81 282 293 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes no 2 0.020137 45.997 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9518900 9518900 0 9518900 9518900 0 0 0 0 4672 753 4782 16569;16570 25044;25045 25044 2 GSISSTSEVHSPPNVGLR RSGEAVISNTSRLSRGSISSTSEVHSPPNV SSTSEVHSPPNVGLRRSGQIEGVRQMHSNA R G S L R R 0 1 1 0 0 0 1 2 1 1 1 0 0 0 2 5 1 0 0 2 0 0 18 0 1822.9173 Q8WWQ0 Q8WWQ0 673 690 PHIP PH-interacting protein yes yes 3 0.00116 24.893 2 0.71633 0.96855 3.8196 2 Median 0.71633 0.96855 3.8196 2 0 Median NaN NaN NaN 0 0 Median 12822000 7305700 5516000 12822000 7305700 5516000 0 0 0 4673 1668 4783 16571;16572 25046;25047;25048;25049;25050 25050 5 GSISVFEVDGKK KCVWKHPPGDEIYRKGSISVFEVDGKKNKI YRKGSISVFEVDGKKNKIYCQNLCLLAKLF K G S K K N 0 0 0 1 0 0 1 2 0 1 0 2 0 1 0 2 0 0 0 2 0 0 12 1 1264.6663 O95251;E7EUP3;B7Z4D9;B3KVJ2;B4DJ40 O95251 402 413 KAT7 Histone acetyltransferase KAT7;Histone acetyltransferase yes no 2 0.0026319 67.726 2 0.79351 0.97087 NaN 1 Median 0.79351 0.97087 NaN 1 0 Median NaN NaN NaN 0 0 Median 19458000 14205000 5252200 19458000 14205000 5252200 0 0 0 4674 1217 4784 16573;16574 25051;25052 25051 2 GSLDYRPLTTADPIDEHR TNPNYEIMCMIRDFRGSLDYRPLTTADPID DYRPLTTADPIDEHRICVCVRKRPLNKKET R G S H R I 1 2 0 3 0 0 1 1 1 1 2 0 0 0 2 1 2 0 1 0 0 0 18 1 2055.0021 B0AZS5;D6R9M0;O00139;B4DM85 B0AZS5 160 177 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A no no 3 0.001515 65.105 1 0.82553 1.1396 NaN 1 Median 0.82553 1.1396 NaN 1 0 Median NaN NaN NaN 0 0 Median 5470500 3333200 2137200 5470500 3333200 2137200 0 0 0 4675 664;1163 4785 16575 25053;25054 25054 2 GSLELCDFVTASSFCR ALLDKLYALGLVPTRGSLELCDFVTASSFC SLELCDFVTASSFCRRRLPTVLLKLRMAQH R G S C R R 1 1 0 1 2 0 1 1 0 0 2 0 0 2 0 3 1 0 0 1 0 0 16 0 1847.8182 Q9NV31 Q9NV31 93 108 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 2 6.6885E-25 171.32 3 0.97929 1.3347 7.675 3 Median 0.97929 1.3347 7.675 3 0 Median NaN NaN NaN 0 0 Median 57261000 29319000 27942000 57261000 29319000 27942000 0 0 0 4676 1762 4786 16576;16577;16578 25055;25056;25057;25058;25059;25060;25061 25055 7 GSLESPATDVFGSTEEGEK RWSTLVEDYGMELRKGSLESPATDVFGSTE SPATDVFGSTEEGEKRWKDLKNRVVEHNIR K G S E K R 1 0 0 1 0 0 4 3 0 0 1 1 0 1 1 3 2 0 0 1 0 0 19 0 1938.8694 A0A0S2Z489;O00232 A0A0S2Z489 331 349 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 2 0.00022896 49.31 2 0.33644 0.43004 22.494 2 Median 0.33644 0.43004 22.494 2 0 Median NaN NaN NaN 0 0 Median 9650800 7267200 2383500 9650800 7267200 2383500 0 0 0 4677 461 4787 16579;16580 25062;25063 25062 2 GSLGGGFSSGGFSGGSFSR GGGGGVSSLRISSSKGSLGGGFSSGGFSGG GGFSSGGFSGGSFSRGSSGGGCFGGSSGGY K G S S R G 0 1 0 0 0 0 0 8 0 0 1 0 0 3 0 6 0 0 0 0 0 0 19 0 1706.7649 CON__P13645;P13645 CON__P13645 41 59 KRT10 Keratin, type I cytoskeletal 10 yes no 2 3.7803E-46 193.98 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 158260000 158260000 0 158260000 158260000 0 0 0 0 + 4678 960 4788 16581;16582;16583;16584 25064;25065;25066;25067;25068 25065 5 GSLGQGTAPVLPGK VGKGLQVKAASVPVKGSLGQGTAPVLPGKT KGSLGQGTAPVLPGKTGPTVTQVKAEKQED K G S G K T 1 0 0 0 0 1 0 4 0 0 2 1 0 0 2 1 1 0 0 1 0 0 14 0 1280.7089 E7ETY2;B4DRA2;B4DLB1;J3KQ96;Q13428;Q59FZ2 E7ETY2 733 746 TCOF1 Treacle protein no no 2 0.0010552 54.259 2 2 0.89733 1.2697 36.786 4 Median 0.70746 0.87881 19.105 2 0 Median 1.0082 1.6138 0.96937 2 0 Median 148120000 77627000 70490000 44100000 24627000 19474000 104020000 53000000 51017000 4679 1016;1135;1469 4789 16585;16586;16587;16588 25069;25070;25071;25072 25069 4 GSLGSQGAKDEPEEELQK KRDKASGDVKEKKGKGSLGSQGAKDEPEEE GSQGAKDEPEEELQKGMGTVEGGDQSNPKS K G S Q K G 1 0 0 1 0 2 4 3 0 0 2 2 0 0 1 2 0 0 0 0 0 0 18 1 1900.9014 E7ETY2;B4DRA2;Q9UFD4;J3KQ96;Q13428 E7ETY2 1406 1423 TCOF1;DKFZp434G1035 Treacle protein no no 2;3 2.2622E-54 178.23 8 4 0.56982 0.70509 24.62 12 Median 0.55806 0.68521 9.3772 8 0 Median 0.67962 1.0911 0.94319 4 0 Median 413800000 251520000 162280000 222020000 138510000 83511000 191790000 113010000 78773000 4680 1016;1135;1469 4790 16589;16590;16591;16592;16593;16594;16595;16596;16597;16598;16599;16600 25073;25074;25075;25076;25077;25078;25079;25080;25081;25082;25083;25084;25085;25086;25087;25088;25089;25090;25091;25092;25093 25082 21 GSNEEDTDTPLFIGK HTGIDLVGTIIATIKGSNEEDTDTPLFIGK GSNEEDTDTPLFIGKVRTLEFPFVNGSAEI K G S G K V 0 0 1 2 0 0 2 2 0 1 1 1 0 1 1 1 2 0 0 0 0 0 15 0 1621.7471 A6NHR9;J3KTL8 A6NHR9 1543 1557 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 3.5461E-07 128.57 4 1 0.93397 1.1695 37.492 5 Median 0.91381 1.1472 3.7589 4 0 Median 1.7335 2.6334 NaN 1 0 Median 36130000 17831000 18298000 25537000 14424000 11113000 10593000 3407500 7185700 4681 568 4791 16601;16602;16603;16604;16605 25094;25095;25096;25097;25098;25099;25100 25094 7 GSNLDAPEPYR DLYPEHYRKYSDYIKGSNLDAPEPYRIGRI DYIKGSNLDAPEPYRIGRIKEIFCPKKSNG K G S Y R I 1 1 1 1 0 0 1 1 0 0 1 0 0 0 2 1 0 0 1 0 0 0 11 0 1217.5677 A0A024R7E3;P26358;Q59FP7;I6L9H2 A0A024R7E3 1044 1054 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 no no 2 4.0732E-06 145.9 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9216500 9216500 0 9216500 9216500 0 0 0 0 4682 176;1129 4792 16606;16607 25101;25102 25101 2 GSNNVALGYDEGSIIVK LNYGMERVWCVASLRGSNNVALGYDEGSII NNVALGYDEGSIIVKLGREEPAMSMDANGK R G S V K L 1 0 2 1 0 0 1 3 0 2 1 1 0 0 0 2 0 0 1 2 0 0 17 0 1734.8788 P35606 P35606 282 298 COPB2 Coatomer subunit beta yes yes 2 5.3895E-05 66.393 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2943700 2943700 0 2943700 2943700 0 0 0 0 4683 1321 4793 16608 25103 25103 1 GSPETNHLIR SYLKKCRRRSAVGARGSPETNHLIRFIARQ AVGARGSPETNHLIRFIARQQNIKNARKSP R G S I R F 0 1 1 0 0 0 1 1 1 1 1 0 0 0 1 1 1 0 0 0 0 0 10 0 1122.5782 E9PEI0;Q69YH5;A8K8Z0;B7Z5Q5 E9PEI0 82 91 CDCA2 Cell division cycle-associated protein 2 yes no 3 0.0064942 73.887 2 0.72555 1.0259 15.797 2 Median 0.72555 1.0259 15.797 2 0 Median NaN NaN NaN 0 0 Median 9693100 4331500 5361600 9693100 4331500 5361600 0 0 0 4684 1023 4794 16609;16610 25104;25105;25106 25106 3 GSPGVVHLVAFHPDPTR RVWDIVRHYGTHHFRGSPGVVHLVAFHPDP PGVVHLVAFHPDPTRLLLFSSATDAAIRVW R G S T R L 1 1 0 1 0 0 0 2 2 0 1 0 0 1 3 1 1 0 0 3 0 0 17 0 1784.9322 Q12788;J3KNP2 Q12788 149 165 TBL3 Transducin beta-like protein 3 no no 3 3.8586E-05 56.121 3 1 0.76385 1.0276 8.7361 4 Median 0.80983 1.1139 6.0876 3 0 Plateau 0.58055 0.92078 NaN 1 0 Median 161470000 93295000 68178000 116670000 65706000 50964000 44803000 27589000 17214000 4685 1456 4795 16611;16612;16613;16614 25107;25108;25109;25110;25111;25112 25112 6 GSPHPGVGVPTYYNHPEALK STWNCHSLSLYSATKGSPHPGVGVPTYYNH GVGVPTYYNHPEALKREKAGGPQLDRYVRP K G S L K R 1 0 1 0 0 0 1 3 2 0 1 1 0 0 4 1 1 0 2 2 0 0 20 0 2119.0487 A0A1C7CYX1;A0A0A0MSU2;A0PJD3;A0A024R689;Q6PJG2 A0A1C7CYX1 147 166 ELMSAN1;C14orf43 ELM2 and SANT domain-containing protein 1 yes no 3 0.0082452 64.331 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 787340 787340 0 787340 787340 0 0 0 0 4686 523 4796 16615 25113 25113 1 GSPLLGPVVPGPSPIPSVTEK QVAHLCSQQSKQDSRGSPLLGPVVPGPSPI PVVPGPSPIPSVTEKRLSSGQNKASGKRQR R G S E K R 0 0 0 0 0 0 1 3 0 1 2 1 0 0 6 3 1 0 0 3 0 0 21 0 2027.1303 P49454 P49454 2995 3015 CENPF Centromere protein F yes yes 2 1.2417E-11 97.2 5 0.71717 0.90775 7.113 3 Median 0.71717 0.90775 7.113 3 0 Median NaN NaN NaN 0 0 Median 27490000 17092000 10398000 27490000 17092000 10398000 0 0 0 4687 1351 4797 16616;16617;16618;16619;16620 25114;25115;25116;25117;25118;25119;25120 25118 7 GSQAPSLPNTSEAQK EDDEEEMEEKLAKAKGSQAPSLPNTSEAQK GSQAPSLPNTSEAQKIKEVPTQFLDRDEEE K G S Q K I 2 0 1 0 0 2 1 1 0 0 1 1 0 0 2 3 1 0 0 0 0 0 15 0 1513.7372 Q13206;Q86VR6;E9PIF2;Q59EC7;B4DKX3 Q13206 601 615 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 2 0.00047408 54.7 1 2 1.0369 1.5479 3.305 2 Median NaN NaN NaN 0 0 Median 1.0369 1.5479 3.305 2 0 Median 18233000 10411000 7822400 2183100 2183100 0 16050000 8228100 7822400 4688 1466 4798 16621;16622;16623 25121;25122;25123;25124;25125 25124 5 GSQFGQSCCLR NPIEKNLQMWEEMKKGSQFGQSCCLRAKID EMKKGSQFGQSCCLRAKIDMSSNNGCMRDP K G S L R A 0 1 0 0 2 2 0 2 0 0 1 0 0 1 0 2 0 0 0 0 0 0 11 0 1298.5496 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 329 339 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.00036451 123.35 4 0.45794 0.62043 23.721 3 Median 0.45794 0.62043 23.721 3 0 Median NaN NaN NaN 0 0 Median 21194000 14487000 6706600 21194000 14487000 6706600 0 0 0 4689 1242 4799 16624;16625;16626;16627 25126;25127;25128;25129;25130;25131 25128 6 GSRPLLSFDPAFDELPHYALLK IHTLAELKMTGNCLKGSRPLLSFDPAFDEL FDPAFDELPHYALLKELLIQIFSTPRYHPK K G S L K E 2 1 0 2 0 0 1 1 1 0 5 1 0 2 3 2 0 0 1 0 0 0 22 1 2485.3005 Q8TDN6;A0JLQ5 Q8TDN6 161 182 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 3;4 2.7807E-77 191.71 6 4 0.95596 1.2919 3.922 8 Median 0.96825 1.286 2.2061 5 0 Median 0.72516 1.2978 6.4742 3 0 Median 885520000 462510000 423010000 663020000 324850000 338170000 222500000 137660000 84844000 4690 1659 4800 16628;16629;16630;16631;16632;16633;16634;16635;16636;16637 25132;25133;25134;25135;25136;25137;25138;25139;25140;25141;25142;25143;25144;25145;25146;25147 25141 16 GSSAGGGGSGAAAATAATAGGQHR ______________________________ GAAAATAATAGGQHRNVQPFSDEDASIETM R G S H R N 8 1 0 0 0 1 0 8 1 0 0 0 0 0 0 3 2 0 0 0 0 0 24 0 1926.8892 C9JLG5;C9JA65;Q75M98;Q75M99;A4D0U1;O00458 C9JLG5 13 36 IFRD1 Interferon-related developmental regulator 1 yes no 3 0.003066 18.248 1 1 0.573 0.73853 7.0135 2 Median 0.57566 0.77608 NaN 1 0 Median 0.57036 0.70279 NaN 1 0 Median 2255300 1328400 926900 829360 459970 369390 1425900 868410 557510 4691 544 4801 16638;16639 25148;25149;25150 25149 3 GSSGGGCFGGSSGGYGGLGGFGGGSFR GGFSSGGFSGGSFSRGSSGGGCFGGSSGGY GGYGGLGGFGGGSFRGSYGSSSFGGSYGGS R G S F R G 0 1 0 0 1 0 0 15 0 0 1 0 0 3 0 5 0 0 1 0 0 0 27 0 2341.9771 CON__P13645;P13645 CON__P13645 60 86 KRT10 Keratin, type I cytoskeletal 10 yes no 2 4.3583E-58 216.16 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 155300000 155300000 0 63404000 63404000 0 91895000 91895000 0 + 4692 960 4802 16640;16641;16642;16643 25151;25152;25153;25154 25152 4 GSSGVGLTAAVLR YIDRLAPRSQYTTGRGSSGVGLTAAVLRDS GRGSSGVGLTAAVLRDSVSGELTLEGGALV R G S L R D 2 1 0 0 0 0 0 3 0 0 2 0 0 0 0 2 1 0 0 2 0 0 13 0 1186.667 B2RBA6;A0A0S2Z4A5;P33993;B3KUD7;B4DDF5;C6EMX8;Q9H4N9 B2RBA6 408 420 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 2 0.00010915 118.23 2 2 0.32779 0.43979 136.14 3 Median 0.30499 0.41244 9.0832 2 0 Median 3.0776 4.348 NaN 1 0 Median 41126000 21562000 19565000 27101000 19907000 7193800 14025000 1654400 12371000 4693 464 4803 16644;16645;16646;16647 25155;25156;25157;25158 25155 4 GSSGVGLTAAVTTDQETGER YVLCTAPRAIPTTGRGSSGVGLTAAVTTDQ GLTAAVTTDQETGERRLEAGAMVLADRGVV R G S E R R 2 1 0 1 0 1 2 4 0 0 1 0 0 0 0 2 4 0 0 2 0 0 20 0 1934.9181 Q8NHX6;Q53HJ4;B2R7C5;A0A0S2Z4T1;A0A0S2Z492;P25205;B4DUQ9;J3KQ69 Q8NHX6 372 391 HCC5;MCM3 DNA helicase;DNA replication licensing factor MCM3 yes no 2 1.1103E-73 219.84 4 1 0.32682 0.4549 3.5715 3 Median 0.32682 0.4549 3.5715 3 0 Median NaN NaN NaN 0 0 Median 28224000 22749000 5475000 24061000 18586000 5475000 4163500 4163500 0 4694 463 4804 16648;16649;16650;16651;16652 25159;25160;25161;25162;25163;25164;25165;25166;25167 25162 9 GSSPDVHALLEITEESDAVLVDK DEGGAERGEAGDLRRGSSPDVHALLEITEE LLEITEESDAVLVDKSDSD___________ R G S D K S 2 0 0 3 0 0 3 1 1 1 3 1 0 0 1 3 1 0 0 3 0 0 23 0 2423.2068 B4DPZ5;B4DNU9;Q6NZI2;B3KRY5 B4DPZ5 337 359 PTRF Polymerase I and transcript release factor yes no 3 1.7871E-05 85.248 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1945200 1945200 0 1945200 1945200 0 0 0 0 4695 842 4805 16653 25168 25168 1 GSSSANPVNSVR RMVSEEMEEQVHSIRGSSSANPVNSVRRKS SIRGSSSANPVNSVRRKSCLVKEVEKMKNK R G S V R R 1 1 2 0 0 0 0 1 0 0 0 0 0 0 1 4 0 0 0 2 0 0 12 0 1173.5738 A8K3S3;A0A140VKF1;Q99661;B7Z7M6;Q5JR89 A8K3S3 178 189 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 2 0.00025414 78.488 1 1 0.80592 1.1238 22.901 2 Median 0.72465 0.95576 NaN 1 0 Median 0.8963 1.3213 NaN 1 0 Median 22748000 11948000 10800000 8821600 4730800 4090800 13927000 7217200 6709500 4696 514 4806 16654;16655 25169;25170;25171 25171 3 GSSVDGSPLLLFLR CAHLCNAVIGYLNTRGSSVDGSPLLLFLRD RGSSVDGSPLLLFLRDQTSSRLLEQVLLVL R G S L R D 0 1 0 1 0 0 0 2 0 0 4 0 0 1 1 3 0 0 0 1 0 0 14 0 1459.8035 Q5HYL4;Q86U38 Q5HYL4 311 324 DKFZp686E1893;NOP9 Nucleolar protein 9 yes no 2 0.00012535 76.843 2 0.47089 0.66241 NaN 1 Median 0.47089 0.66241 NaN 1 0 Median NaN NaN NaN 0 0 Median 3078500 2540200 538220 3078500 2540200 538220 0 0 0 4697 1557 4807 16656;16657 25172;25173 25173 2 GSTESCNTTTEDEDLK EPQTTVVHNATDGIKGSTESCNTTTEDEDL STESCNTTTEDEDLKVRKQEIIKITEQLIE K G S L K V 0 0 1 2 1 0 3 1 0 0 1 1 0 0 0 2 4 0 0 0 0 0 16 0 1785.7211 Q5SWX3;A8K6N9;A0A0A0MS52;A0A0A0MT11;Q13555;Q8WU40;B3KY86;H0Y6G2;Q13280;B3KTH7;Q59FI6 Q5SWX3 367 382 CAMK2G Calcium/calmodulin-dependent protein kinase type II subunit gamma yes no 2 0.00011846 109.44 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4698 393 4808 16658 25174 25174 1 GSVAEAEDCYNTALR FPDAYCNLANALKEKGSVAEAEDCYNTALR GSVAEAEDCYNTALRLCPTHADSLNNLANI K G S L R L 3 1 1 1 1 0 2 1 0 0 1 0 0 0 0 1 1 0 1 1 0 0 15 0 1654.7257 Q548W1;O15294 Q548W1 181 195 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes no 2 0.00046572 105.25 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 542570 542570 0 542570 542570 0 0 0 0 4699 1179 4809 16659;16660 25175;25176 25176 2 GSVDSNWIVGATLEK FGYQLDLPKANLLFKGSVDSNWIVGATLEK GSVDSNWIVGATLEKKLPPLPLTLALGAFL K G S E K K 1 0 1 1 0 0 1 2 0 1 1 1 0 0 0 2 1 1 0 2 0 0 15 0 1574.794 O96008 O96008 316 330 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes yes 2 0.013116 31.675 1 2.7713 4.081 NaN 1 Median NaN NaN NaN 0 0 Median 2.7713 4.081 NaN 1 0 Median 8353800 2148500 6205300 0 0 0 8353800 2148500 6205300 4700 1226 4810 16661 25177 25177 1 GSVEEDILER IGQKKQVNIYRLVTKGSVEEDILERAKKKM RLVTKGSVEEDILERAKKKMVLDHLVIQRM K G S E R A 0 1 0 1 0 0 3 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1145.5564 O14646 O14646 916 925 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 0.03341 41.08 1 0.99274 1.4752 NaN 1 Median NaN NaN NaN 0 0 Median 0.99274 1.4752 NaN 1 0 Median 6606100 4115600 2490500 0 0 0 6606100 4115600 2490500 4701 1169 4811 16662 25178 25178 1 GSVHSVSFSPDGR VSLVCRSVLHHFHFKGSVHSVSFSPDGRKF FKGSVHSVSFSPDGRKFVVTKGNIAQMYHA K G S G R K 0 1 0 1 0 0 0 2 1 0 0 0 0 1 1 4 0 0 0 2 0 0 13 0 1330.6266 Q15269;A0A0B4J2E5 Q15269 97 109 PWP2 Periodic tryptophan protein 2 homolog yes no 2;3 3.8659E-12 176.48 6 2 0.78691 1.0613 30.188 6 Median 0.88275 1.1801 28.269 4 0 Median 0.60264 0.85629 8.6304 2 0 Median 119350000 70072000 49281000 98017000 56825000 41191000 21337000 13247000 8089700 4702 1508 4812 16663;16664;16665;16666;16667;16668;16669;16670 25179;25180;25181;25182;25183;25184;25185;25186;25187;25188 25179 10 GSVHSVSFSPDGRK VSLVCRSVLHHFHFKGSVHSVSFSPDGRKF KGSVHSVSFSPDGRKFVVTKGNIAQMYHAP K G S R K F 0 1 0 1 0 0 0 2 1 0 0 1 0 1 1 4 0 0 0 2 0 0 14 1 1458.7215 Q15269;A0A0B4J2E5 Q15269 97 110 PWP2 Periodic tryptophan protein 2 homolog yes no 2;3 0.0028164 69.314 2 0.99763 1.3261 NaN 1 Median 0.99763 1.3261 NaN 1 0 Median NaN NaN NaN 0 0 Median 27217000 13468000 13749000 27217000 13468000 13749000 0 0 0 4703 1508 4813 16671;16672 25189;25190 25189 2 GSVPLSSSPPATHFPDETEITNPVPK PQKSVVSDLEADDVKGSVPLSSSPPATHFP THFPDETEITNPVPKKNVTVKKTAAKSQSS K G S P K K 1 0 1 1 0 0 2 1 1 1 1 1 0 1 6 4 3 0 0 2 0 0 26 0 2703.3392 P11388 P11388 1386 1411 TOP2A DNA topoisomerase 2-alpha yes yes 3 1.0213E-09 99.078 4 2 0.72107 0.95224 5.9758 6 Median 0.75392 0.97803 5.5175 4 0 Median 0.58377 0.92406 6.8145 2 0 Median 520790000 308390000 212390000 315170000 179760000 135410000 205620000 128640000 76979000 4704 1256 4814 16673;16674;16675;16676;16677;16678 25191;25192;25193;25194;25195;25196;25197;25198;25199;25200;25201;25202;25203 25194 13 GSVSCPTCQAVGR YGSLEEQWYLEIVDKGSVSCPTCQAVGRKT DKGSVSCPTCQAVGRKTIEGLKKHMENCKQ K G S G R K 1 1 0 0 2 1 0 2 0 0 0 0 0 0 1 2 1 0 0 2 0 0 13 0 1377.6129 B4DES6;B7Z9P6;G3XAG1;Q96ME7 B4DES6 62 74 ZNF512 Zinc finger protein 512 yes no 2 0.00025182 113.69 6 1 0.72254 0.97952 17.393 4 Median 0.79356 1.1205 17.207 3 0 Median 0.65787 0.84896 NaN 1 0 Median 22393000 13617000 8775900 19325000 11770000 7554700 3067900 1846700 1221200 4705 799 4815 16679;16680;16681;16682;16683;16684;16685 25204;25205;25206;25207;25208;25209;25210;25211;25212;25213 25211 10 GSYGDLGGPIITTQVTIPK PQVEYHSYYSYAGGRGSYGDLGGPIITTQV DLGGPIITTQVTIPKDLAGSIIGKGGQRIK R G S P K D 0 0 0 1 0 1 0 4 0 3 1 1 0 0 2 1 3 0 1 1 0 0 19 0 1916.0255 A0A024R228;P61978;B4DUQ1;Q5EC54;Q5T6W2;B4DFF1;B3KU16;S4R359 A0A024R228 378 396 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 2 8.4548E-51 198.87 4 0.52793 0.66448 10.369 4 Median 0.52793 0.66448 10.369 4 0 Median NaN NaN NaN 0 0 Median 56799000 36605000 20193000 56799000 36605000 20193000 0 0 0 4706 77 4816 16686;16687;16688;16689 25214;25215;25216;25217;25218;25219;25220;25221 25215 8 GSYLTVTLQRPTK SGKKELSEVEKAKIRGSYLTVTLQRPTKEL IRGSYLTVTLQRPTKELHGTSIVPKLQAIT R G S T K E 0 1 0 0 0 1 0 1 0 0 2 1 0 0 1 1 3 0 1 1 0 0 13 1 1462.8144 I3VM54;I3VM53;Q9Y2K7;B4DSG1 I3VM54 779 791 KDM2A Lysine-specific demethylase 2A yes no 2 0.018373 71.085 1 1 0.35901 0.51155 23.865 2 Median 0.46093 0.60559 NaN 1 0 Median 0.27962 0.43211 NaN 1 0 Median 10911000 8381500 2529300 1755100 1302900 452180 9155800 7078600 2077200 4707 1128 4817 16690;16691 25222;25223 25223 2 GSYVSIHSSGFR APQESTPAPPKKDIKGSYVSIHSSGFRDFL DIKGSYVSIHSSGFRDFLLKPELLRAIVDC K G S F R D 0 1 0 0 0 0 0 2 1 1 0 0 0 1 0 4 0 0 1 1 0 0 12 0 1295.6258 A0A024RCM3;Q13838;Q5STU3;F6WLT2;F6S4E6;A0A0A0MT12;F6TRA5;Q59G92;F6QYI9;A0A0G2JJL7;F6R6M7;Q7KYK3;A0A0G2JHN7;F6U6E2;F6S2B7;F6SXL5;B4DH55;O00148;B4DX78;K7EQN7;A0A024R7H0;K7EPJ3;K7EN69;K7ENP6;K7EL56;K7EIL8;B4DF34 O00148 36 47 hCG_2005638;DDX39B;BAT1;DDX39A;DDX39 Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A no no 2 2.3539E-10 120.09 4 0.51515 0.70082 15.753 3 Plateau 0.51515 0.70082 15.753 3 0 Plateau NaN NaN NaN 0 0 Median 79756000 54718000 25038000 79756000 54718000 25038000 0 0 0 4708 1164;296 4818 16692;16693;16694;16695 25224;25225;25226;25227;25228;25229 25227 6 GTAAAAAAAAAAAK AALLKASPKKAPGTKGTAAAAAAAAAAAKV KGTAAAAAAAAAAAKVPAKKITAASKKAPA K G T A K V 11 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 14 0 1085.5829 A8K3Q9 A8K3Q9 148 161 yes yes 2 3.1355E-45 180.15 4 2 0.74359 0.969 7.3948 5 Median 0.74651 1.0067 3.3151 3 0 Plateau 0.55325 0.87452 0.30502 2 0 Median 1323000000 781460000 541510000 1050000000 607080000 442880000 273000000 174370000 98625000 4709 596 4819 16696;16697;16698;16699;16700;16701 25230;25231;25232;25233;25234;25235;25236;25237;25238;25239 25233 10 GTAITHALTSASTLCQVEPVGR ______________________________ LTSASTLCQVEPVGRWFEAFVKRRNRNASA R G T G R W 3 1 0 0 1 1 1 2 1 1 2 0 0 0 1 2 4 0 0 2 0 0 22 0 2268.1532 Q99543;Q6P5S9;F2Z3H0;F2Z3N9 Q99543 12 33 DNAJC2 DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed yes no 3 0.013811 19.378 1 0.84441 1.1829 NaN 1 Median 0.84441 1.1829 NaN 1 0 Median NaN NaN NaN 0 0 Median 6081000 2651800 3429200 6081000 2651800 3429200 0 0 0 4710 1704 4820 16702 25240 25240 1 GTATFDGTAIANAVVK HATAHSLVLVDELGRGTATFDGTAIANAVV TATFDGTAIANAVVKELAETIKCRTLFSTH R G T V K E 4 0 1 1 0 0 0 2 0 1 0 1 0 1 0 0 3 0 0 2 0 0 16 0 1534.7991 P52701;A0A087WYT6;Q6LAI4 P52701 1218 1233 MSH6 DNA mismatch repair protein Msh6 yes no 2 0.001632 84.605 1 0.41617 0.54637 NaN 1 Median 0.41617 0.54637 NaN 1 0 Median NaN NaN NaN 0 0 Median 3180000 2416200 763880 3180000 2416200 763880 0 0 0 4711 1365 4821 16703 25241 25241 1 GTAYTFFTPGNLK DYVHRIGRTARSTNKGTAYTFFTPGNLKQA NKGTAYTFFTPGNLKQARELIKVLEEANQA K G T L K Q 1 0 1 0 0 0 0 2 0 0 1 1 0 2 1 0 3 0 1 0 0 0 13 0 1415.7085 Q59F66;Q92841 Q59F66 518 530 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 0.00021466 120.45 4 1 0.46795 0.58711 45.001 4 Median 0.36644 0.45204 32.777 3 0 Median 0.71019 1.0799 NaN 1 0 Median 79171000 50800000 28371000 54756000 34307000 20449000 24415000 16494000 7921600 4712 1554 4822 16704;16705;16706;16707;16708 25242;25243;25244;25245;25246 25245 5 GTDDFDFAGSFQGPR LEVHSKVSTKKSKRKGTDDFDFAGSFQGPR GTDDFDFAGSFQGPRKKKRNLNDSSLFVSA K G T P R K 1 1 0 3 0 1 0 3 0 0 0 0 0 3 1 1 1 0 0 0 0 0 15 0 1615.6903 B2R5U7;Q03701 B2R5U7 950 964 CEBPZ CCAAT/enhancer-binding protein zeta no no 2 2.8518E-18 135.1 5 0.83763 1.1323 3.1801 2 Median 0.83763 1.1323 3.1801 2 0 Median NaN NaN NaN 0 0 Median 22135000 12555000 9580400 22135000 12555000 9580400 0 0 0 4713 693;1441 4823 16709;16710;16711;16712;16713 25247;25248;25249;25250;25251;25252;25253;25254;25255 25252 9 GTDTQTPAVLSPSK SSKKVAFLRQNAPPKGTDTQTPAVLSPSKT KGTDTQTPAVLSPSKTQATLKPKDHHQPLG K G T S K T 1 0 0 1 0 1 0 1 0 0 1 1 0 0 2 2 3 0 0 1 0 0 14 0 1400.7147 P46087 P46087 722 735 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 7.0206E-28 177.04 5 2 0.8124 1.0143 16.446 4 Median 0.83783 1.0264 5.2856 3 0 Median 0.50325 0.76077 NaN 1 0 Median 59179000 30307000 28872000 38922000 20830000 18092000 20257000 9476700 10781000 4714 1343 4824 16714;16715;16716;16717;16718;16719;16720 25256;25257;25258;25259;25260;25261;25262;25263;25264;25265 25257 10 GTEASSGTEAATGLEGEEK KTEIMSPLYQDEAPKGTEASSGTEAATGLE SSGTEAATGLEGEEKDGISDSDSSTSSEEE K G T E K D 3 0 0 0 0 0 5 4 0 0 1 1 0 0 0 2 3 0 0 0 0 0 19 0 1822.8068 Q8IY81;B4DKU3 Q8IY81 594 612 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 9.1781E-206 331.7 4 2 0.80325 1.0116 5.2827 6 Median 0.84919 1.0493 6.2455 4 0 Median 0.62373 0.9921 0.83634 2 0 Median 256700000 152490000 104210000 103530000 57018000 46512000 153170000 95472000 57695000 4715 1628 4825 16721;16722;16723;16724;16725;16726 25266;25267;25268;25269;25270;25271;25272;25273;25274;25275;25276;25277;25278 25270 13 GTEDITSPHGIPLDLLDR PIVIFASNRGNCVIRGTEDITSPHGIPLDL DITSPHGIPLDLLDRVMTIRTMLYTPQEMK R G T D R V 0 1 0 3 0 0 1 2 1 2 3 0 0 0 2 1 2 0 0 0 0 0 18 0 1947.9902 B5BUB1;Q9Y265;E7ETR0;B3KRS7;H7C4G5;J3QLR1 B5BUB1 340 357 RUVBL1 RuvB-like 1 yes no 3 1.2915E-09 90.379 4 2 0.60901 1.1587 29.044 5 Linear 0.58804 0.84577 7.2193 4 0 Linear 0.90911 1.5037 NaN 1 0 Median 396460000 206660000 189800000 262770000 162340000 100430000 133700000 44325000 89371000 4716 896 4826 16727;16728;16729;16730;16731;16732 25279;25280;25281;25282;25283;25284;25285;25286;25287;25288;25289 25285 11 GTEPSTDGETSEAESNYSVSEHHDTILR KARKRKSRTTGSLPKGTEPSTDGETSEAES ESNYSVSEHHDTILRVTRRRQILIACSPVS K G T L R V 1 1 1 2 0 0 5 2 2 1 1 0 0 0 1 5 4 0 1 1 0 0 28 0 3047.3228 Q5QJE6;J3KP30;B7Z854;E9PRB3 Q5QJE6 78 105 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 3;4 1.7195E-18 114.39 6 4 0.681 1.0036 31.138 8 Median 0.98825 1.3413 21.843 4 0 Median 0.55185 0.83733 10.26 4 0 Median 196390000 113210000 83179000 81337000 41377000 39960000 115060000 71836000 43220000 4717 1561 4827 16733;16734;16735;16736;16737;16738;16739;16740;16741;16742 25290;25291;25292;25293;25294;25295;25296;25297;25298;25299;25300;25301;25302;25303;25304;25305 25296 16 GTEVQVDDIK IQLITAASLVCRKRKGTEVQVDDIKRVYSL CRKRKGTEVQVDDIKRVYSLFLDESRSTQY K G T I K R 0 0 0 2 0 1 1 1 0 1 0 1 0 0 0 0 1 0 0 2 0 0 10 0 1102.5506 Q9Y230;B3KNL2 Q9Y230 418 427 RUVBL2 RuvB-like 2 yes no 2 4.9884E-08 130.75 3 2 0.89661 1.3437 41.199 3 Median 0.52873 0.66312 NaN 1 0 Median 0.9027 1.3535 1.0269 2 0 Median 42239000 25871000 16368000 20975000 14619000 6355600 21264000 11251000 10013000 4718 1801 4828 16743;16744;16745;16746;16747 25306;25307;25308;25309;25310;25311;25312;25313 25309 8 GTEVQVDDIKR IQLITAASLVCRKRKGTEVQVDDIKRVYSL RKRKGTEVQVDDIKRVYSLFLDESRSTQYM K G T K R V 0 1 0 2 0 1 1 1 0 1 0 1 0 0 0 0 1 0 0 2 0 0 11 1 1258.6517 Q9Y230;B3KNL2 Q9Y230 418 428 RUVBL2 RuvB-like 2 yes no 2 0.0028855 78.939 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1617400 0 1617400 0 0 0 1617400 0 1617400 4719 1801 4829 16748 25314 25314 1 GTGASGSFKLNKK GLKSLVSKGTLVQTKGTGASGSFKLNKKAA TKGTGASGSFKLNKKAASGEAKPKAKKAGA K G T K K A 1 0 1 0 0 0 0 3 0 0 1 3 0 1 0 2 1 0 0 0 0 0 13 2 1293.7041 B2R984;A3R0T8;P10412;Q4VB24;A3R0T7;P16402;Q02539;P16403;P16401 P16403 98 110 HIST1H1E;HIST1H1D;HIST1H1A;HIST1H1C;HIST1H1B Histone H1.4;Histone H1.3;Histone H1.1;Histone H1.2;Histone H1.5 no no 3 0.0016147 88.803 1 0.81309 0.91177 NaN 1 Median 0.81309 0.91177 NaN 1 0 Median NaN NaN NaN 0 0 Median 2622200 1072300 1549900 2622200 1072300 1549900 0 0 0 4720 542;1274;1273 4830 16749 25315 25315 1 GTGEAEEEYVGPR GNAVRAGVREKRRGRGTGEAEEEYVGPRLS GRGTGEAEEEYVGPRLSRRILQQARQQQEE R G T P R L 1 1 0 0 0 0 4 3 0 0 0 0 0 0 1 0 1 0 1 1 0 0 13 0 1392.6157 Q13895;F8WBL2 Q13895 41 53 BYSL Bystin yes no 2 4.1427E-08 145.99 4 2 0.92354 1.2806 11.159 5 Median 0.99595 1.3333 12.061 3 0 Median 0.80326 1.2273 0.087092 2 0 Median 70275000 35904000 34370000 31700000 14748000 16952000 38575000 21156000 17419000 4721 1480 4831 16750;16751;16752;16753;16754;16755 25316;25317;25318;25319;25320;25321;25322;25323;25324;25325 25318 10 GTGIVSAPVPK GRCGSVLVRLIPAPRGTGIVSAPVPKKLLM PAPRGTGIVSAPVPKKLLMMAGIDDCYTSA R G T P K K 1 0 0 0 0 0 0 2 0 1 0 1 0 0 2 1 1 0 0 2 0 0 11 0 1024.5917 P15880;Q8J014;Q6IPX5;Q3KQT6;H0YEN5;E9PQD7;I3L404;E9PMM9;E9PM36;Q9BSW5 P15880 201 211 RPS2;rps2 40S ribosomal protein S2 yes no 2 1.95E-08 129.63 4 2 0.74309 0.98113 18.485 6 Median 0.76112 1.0021 2.6029 4 0 Median 0.44521 0.70337 2.8758 2 0 Median 1251600000 735130000 516510000 928430000 510400000 418030000 323200000 224720000 98478000 4722 1269 4832 16756;16757;16758;16759;16760;16761 25326;25327;25328;25329;25330;25331;25332;25333;25334;25335;25336 25330 11 GTGSGGQLQDLDCSSSDDEGAAQNSTKPSATK GTPEAALSEDINLIRGTGSGGQLQDLDCSS DEGAAQNSTKPSATKGTLGGMFGMLKGLVG R G T T K G 3 0 1 4 1 3 1 5 0 0 2 2 0 0 1 6 3 0 0 0 0 0 32 1 3168.3749 A0A024R3M0;P08240;Q6IAX9 A0A024R3M0 59 90 SRPR Signal recognition particle receptor subunit alpha yes no 3 1.2975E-20 105.75 1 0.29561 0.36806 NaN 1 Median 0.29561 0.36806 NaN 1 0 Median NaN NaN NaN 0 0 Median 4193800 3097300 1096500 4193800 3097300 1096500 0 0 0 4723 102 4833 16762 25337;25338;25339 25338 3 GTGVSEDGELSIENPFGETFGK CLFFLILGLTYLGMRGTGVSEDGELSIENP GELSIENPFGETFGKIQESEKTLMMNTLYK R G T G K I 0 0 1 1 0 0 4 5 0 1 1 1 0 2 1 2 2 0 0 1 0 0 22 0 2269.0386 A0A024RBB9;Q9Y2U8 A0A024RBB9 497 518 LEMD3 Inner nuclear membrane protein Man1 yes no 2 0.0050459 94.454 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 824490 824490 0 824490 824490 0 0 0 0 4724 269 4834 16763 25340;25341 25340 2 GTGVVTSVPSDSPDDIAALR KVIYVLPMLTIKEDKGTGVVTSVPSDSPDD TSVPSDSPDDIAALRDLKKKQALRAKYGIR K G T L R D 2 1 0 3 0 0 0 2 0 1 1 0 0 0 2 3 2 0 0 3 0 0 20 0 1955.98 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3 B4E266 339 358 LARS Leucine--tRNA ligase, cytoplasmic yes no 2 3.9254E-13 115.12 4 2 0.6583 0.9081 80.161 6 Median 0.59574 0.82317 15.954 4 0 Median 2.456 3.6837 13.829 2 0 Median 61572000 27627000 33945000 29895000 18083000 11812000 31676000 9543700 22132000 4725 732 4835 16764;16765;16766;16767;16768;16769 25342;25343;25344;25345;25346;25347;25348;25349;25350;25351;25352;25353 25347 12 GTHFNFAIVFTDVK LTSLVKEVYPEARKKGTHFNFAIVFTDVKR KGTHFNFAIVFTDVKRPGYRVKEIGSTMSG K G T V K R 1 0 1 1 0 0 0 1 1 1 0 1 0 3 0 0 2 0 0 2 0 0 14 0 1594.8144 H7BZW6;X6RAL5;O00422;U3KPY7 H7BZW6 81 94 SAP18 Histone deacetylase complex subunit SAP18 yes no 3 0.042377 43.297 1 0.33604 0.42302 NaN 1 Median 0.33604 0.42302 NaN 1 0 Median NaN NaN NaN 0 0 Median 6033300 4558900 1474400 6033300 4558900 1474400 0 0 0 4726 1120 4836 16770 25354 25354 1 GTHQLYSTSHDR FTGHRDAVSGLAFRRGTHQLYSTSHDRSVK FRRGTHQLYSTSHDRSVKVWNVAENSYVET R G T D R S 0 1 0 1 0 1 0 1 2 0 1 0 0 0 0 2 2 0 1 0 0 0 12 0 1400.6433 O43818 O43818 252 263 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2;3 0.00044222 91.307 5 0.89585 1.2406 22.055 5 Median 0.89585 1.2406 22.055 5 0 Median NaN NaN NaN 0 0 Median 99095000 54789000 44306000 99095000 54789000 44306000 0 0 0 4727 1188 4837 16771;16772;16773;16774;16775 25355;25356;25357;25358;25359;25360;25361;25362 25361 8 GTIEILSDVQLIK TSFFQALGITTKISRGTIEILSDVQLIKTG SRGTIEILSDVQLIKTGDKVGASEATLLNM R G T I K T 0 0 0 1 0 1 1 1 0 3 2 1 0 0 0 1 1 0 0 1 0 0 13 0 1427.8235 Q53HW2;A8K4Z4;A0A024RBS2;P05388;Q53HK9;F8VW21;F8VU65;B4E3D5;Q8NHW5;F8VPE8 Q53HW2 150 162 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 1.4927E-127 270.36 4 2 0.77035 1.0214 8.1209 5 Median 0.78486 1.0043 7.5027 4 0 Median 0.71117 1.1444 NaN 1 0 Median 399480000 193450000 206030000 260820000 145530000 115290000 138660000 47922000 90737000 4728 281 4838 16776;16777;16778;16779;16780;16781 25363;25364;25365;25366;25367;25368;25369;25370 25365 8 GTIQVITQGTSLK EALGTLMRAWAGSPKGTIQVITQGTSLKNA PKGTIQVITQGTSLKNAGNCLSPAVIVGLL K G T L K N 0 0 0 0 0 2 0 2 0 2 1 1 0 0 0 1 3 0 0 1 0 0 13 0 1344.7613 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2;Q8N5M8;Q9UMY3 O43175 352 364 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 2 3.7533E-20 185.96 4 2 0.64374 0.79799 125.78 6 Median 0.62885 0.77246 7.3225 4 0 Median 5.7546 8.6507 2.3713 2 0 Median 115430000 56634000 58800000 85621000 51928000 33693000 29813000 4706600 25107000 4729 1182 4839 16782;16783;16784;16785;16786;16787 25371;25372;25373;25374;25375;25376;25377;25378;25379;25380;25381 25375 11 GTKKKKGLDSMTSTVAAGWLDR TKKPTRECESLSELKGTKKKKGLDSMTSTV LDSMTSTVAAGWLDRRV_____________ K G T D R R 2 1 0 2 0 0 0 3 0 0 2 4 1 0 0 2 3 1 0 1 0 0 22 4 2349.2475 F5GZ00 F5GZ00 320 341 CAMKK2 yes yes 2 0.0032978 79.875 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4730 1054 4840 16788 25382 25382 376 1 GTLDPVEK ITRARFEELNADLFRGTLDPVEKALRDAKL LNADLFRGTLDPVEKALRDAKLDKSQIHDI R G T E K A 0 0 0 1 0 0 1 1 0 0 1 1 0 0 1 0 1 0 0 1 0 0 8 0 857.44945 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;Q53HF2;E9PN89;E9PNE6;B4E1Q1;A8K7Q2 V9HW22 312 319 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 2 0.0015928 89.296 3 1 0.87777 1.2557 78.28 2 Median 0.55405 0.72192 NaN 1 0 Median 1.3906 2.1841 NaN 1 0 Median 118390000 76769000 41624000 80579000 61149000 19430000 37814000 15620000 22194000 4731 1253 4841 16789;16790;16791;16792 25383;25384;25385;25386;25387 25385 5 GTLITHCYK FWLLPVKQSGVPLAKGTLITHCYKDLGFMD GVPLAKGTLITHCYKDLGFMDFICSLVTKS K G T Y K D 0 0 0 0 1 0 0 1 1 1 1 1 0 0 0 0 2 0 1 0 0 0 9 0 1091.5434 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 176 184 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.0031201 105.14 3 2 0.85403 1.0419 49.37 5 Median 0.92566 1.1555 7.8765 3 0 Median 0.31684 0.47064 17.805 2 0 Median 58107000 33977000 24130000 43424000 22817000 20607000 14682000 11160000 3523000 4732 748 4842 16793;16794;16795;16796;16797 25388;25389;25390;25391;25392;25393;25394 25389 7 GTLVQTKGTGASGSFK NNSRIKLGLKSLVSKGTLVQTKGTGASGSF TLVQTKGTGASGSFKLNKKAASGEAKPKAK K G T F K L 1 0 0 0 0 1 0 4 0 0 1 2 0 1 0 2 3 0 0 1 0 0 16 1 1537.81 B2R984;A3R0T8;P10412;Q4VB24;P16402;Q02539;P16403;P16401 P16403 91 106 HIST1H1E;HIST1H1D;HIST1H1A;HIST1H1C;HIST1H1B Histone H1.4;Histone H1.3;Histone H1.1;Histone H1.2;Histone H1.5 no no 3 0.017375 25.342 1 0.606 0.89966 NaN 1 Median NaN NaN NaN 0 0 Median 0.606 0.89966 NaN 1 0 Median 4638500 2657100 1981400 0 0 0 4638500 2657100 1981400 4733 542;1274;1273 4843 16798 25395 25395 1 GTNTSSPYDAGADYLR IGSPPVTSSQVMLSKGTNTSSPYDAGADYL TNTSSPYDAGADYLRACPKCNVQFNLLDPL K G T L R A 2 1 1 2 0 0 0 2 0 0 1 0 0 0 1 2 2 0 2 0 0 0 16 0 1686.7485 Q8ND82;Q9UJJ2 Q8ND82 222 237 ZNF280C Zinc finger protein 280C yes no 2 3.0626E-08 117.07 4 1 0.88308 1.2394 28.514 4 Median 1.0349 1.3903 13.933 3 0 Plateau 0.55049 0.76893 NaN 1 0 Median 20976000 13499000 7477300 12292000 8622200 3669900 8683800 4876400 3807400 4734 1652 4844 16799;16800;16801;16802;16803 25396;25397;25398;25399;25400;25401;25402;25403;25404 25396 9 GTPAGTTPGASQAPK LEQANKGAPHSSPARGTPAGTTPGASQAPK GTPAGTTPGASQAPKAFNKPHLANGHVVPI R G T P K A 3 0 0 0 0 1 0 3 0 0 0 1 0 0 3 1 3 0 0 0 0 0 15 0 1339.6732 Q8IVT2 Q8IVT2 218 232 MISP Mitotic interactor and substrate of PLK1 yes yes 2 6.1004E-34 203.03 3 0.49138 0.623 21.119 3 Median 0.49138 0.623 21.119 3 0 Median NaN NaN NaN 0 0 Median 14996000 9632200 5363400 14996000 9632200 5363400 0 0 0 4735 1624 4845 16804;16805;16806 25405;25406;25407;25408 25407 4 GTQCVEQIQELVLR EVFGFISLLNLTERKGTQCVEQIQELVLRF KGTQCVEQIQELVLRFCEKNCEKSMVEQLD K G T L R F 0 1 0 0 1 3 2 1 0 1 2 0 0 0 0 0 1 0 0 2 0 0 14 0 1671.8614 Q9P287;B4DUS0;B4E318 Q9P287 138 151 BCCIP BRCA2 and CDKN1A-interacting protein yes no 2 0.00045836 75.088 2 1.457 2.1002 NaN 1 Median 1.457 2.1002 NaN 1 0 Median NaN NaN NaN 0 0 Median 2595100 1377700 1217500 2595100 1377700 1217500 0 0 0 4736 1779 4846 16807;16808 25409;25410 25410 1 GTQGAEEVLR AIYLEKLKTISLVIRGTQGAEEVLRAHEEQ SLVIRGTQGAEEVLRAHEEQLKEAQAVPAT R G T L R A 1 1 0 0 0 1 2 2 0 0 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1058.5356 Q15149 Q15149 1234 1243 PLEC Plectin yes yes 2 3.3618E-11 138.06 2 0.82666 1.1139 4.0491 2 Median 0.82666 1.1139 4.0491 2 0 Median NaN NaN NaN 0 0 Median 37889000 21034000 16855000 37889000 21034000 16855000 0 0 0 4737 1507 4847 16809;16810 25411;25412;25413;25414 25413 4 GTQGATAGASSELDASK YRGRKKGKKKDQIGKGTQGATAGASSELDA QGATAGASSELDASKTVSSPPTSPRPGSAA K G T S K T 4 0 0 1 0 1 1 3 0 0 1 1 0 0 0 3 2 0 0 0 0 0 17 0 1549.722 V9HWK0;O76094 V9HWK0 601 617 HEL103;SRP72 Signal recognition particle subunit SRP72 yes no 2 0.003149 101.72 2 1 0.72957 0.95678 13.393 2 Median 0.70404 0.87033 NaN 1 0 Median 0.75604 1.0518 NaN 1 0 Median 8509800 5657200 2852500 2794100 2333300 460770 5715700 3323900 2391800 4738 1211 4848 16811;16812;16813 25415;25416;25417;25418 25415 4 GTQGVVTNFEIFR KNGDYLCVKVYRTPKGTQGVVTNFEIFRMR PKGTQGVVTNFEIFRMREKQVPVDVVEMKE K G T F R M 0 1 1 0 0 1 1 2 0 1 0 0 0 2 0 0 2 0 0 2 0 0 13 0 1466.7518 Q96G38;B4DXN6;B4DV79;A4D210;A0A024R821;P55884;Q59FS8 Q96G38 344 356 EIF3B;EIF3S9 Eukaryotic translation initiation factor 3 subunit B yes no 2 0.0069081 78.548 3 0.3951 0.53155 8.7245 3 Median 0.3951 0.53155 8.7245 3 0 Median NaN NaN NaN 0 0 Median 12060000 8076700 3983500 12060000 8076700 3983500 0 0 0 4739 190 4849 16814;16815;16816 25419;25420;25421 25419 3 GTQLLSSGSDGLVK EGHDASVLKVAFVSRGTQLLSSGSDGLVKL RGTQLLSSGSDGLVKLWTIKNNECVRTLDA R G T V K L 0 0 0 1 0 1 0 3 0 0 3 1 0 0 0 3 1 0 0 1 0 0 14 0 1360.7198 Q12788;J3KNP2;A0JLS5 Q12788 575 588 TBL3 Transducin beta-like protein 3 no no 2 8.9651E-33 196.11 2 2 0.89846 1.1273 4.4067 4 Linear 0.86908 1.0966 6.5095 2 0 Median 0.74805 1.1286 2.7627 2 0 Median 110640000 60363000 50273000 73353000 39091000 34262000 37284000 21272000 16011000 4740 1456 4850 16817;16818;16819;16820 25422;25423;25424;25425;25426;25427;25428;25429 25422 8 GTQNIPAGKPSLQTSSAR GSVGSTVTTPPPLVRGTQNIPAGKPSLQTS NIPAGKPSLQTSSARMPGSVIPPPLVRGGQ R G T A R M 2 1 1 0 0 2 0 2 0 1 1 1 0 0 2 3 2 0 0 0 0 0 18 1 1811.949 A0A024R7K7;A0A024R7M6;Q86YP4 A0A024R7K7 196 213 GATAD2A Transcriptional repressor p66-alpha yes no 3 0.00044175 79.514 2 2 1.4569 2.2544 34.286 3 Plateau 0.89539 1.2026 NaN 1 0 Median 1.3787 2.1036 16.332 2 0 Median 26442000 14363000 12079000 9580500 6995000 2585600 16862000 7368400 9493600 4741 179 4851 16821;16822;16823;16824 25430;25431;25432;25433;25434;25435;25436 25430 7 GTQTYSVLEGDPSENYSK YDRVVRREICRIITKGTQTYSVLEGDPSEN TYSVLEGDPSENYSKYLLSLKEKEEDSSGH K G T S K Y 0 0 1 1 0 1 2 2 0 0 1 1 0 0 1 3 2 0 2 1 0 0 18 0 1973.8854 P52701;A0A087WWJ1;Q1L838 P52701 520 537 MSH6;GTBP DNA mismatch repair protein Msh6 yes no 2 1.3744E-34 178.23 4 0.46793 0.6018 0.59981 2 Median 0.46793 0.6018 0.59981 2 0 Median NaN NaN NaN 0 0 Median 12434000 9328700 3105500 12434000 9328700 3105500 0 0 0 4742 1365 4852 16825;16826;16827;16828 25437;25438;25439;25440;25441;25442 25438 6 GTSFDAAATSGGSASSEK CTVKCDEKVKVFSVRGTSFDAAATSGGSAS FDAAATSGGSASSEKASSTSPVEISEWLDQ R G T E K A 4 0 0 1 0 0 1 3 0 0 0 1 0 1 0 5 2 0 0 0 0 0 18 0 1629.7118 A0A0S2Z3L0;P13804;H0YL12;H0YKF0;H0YLU7;A0A0S2Z3M4;H0YK49;H0YNX6 A0A0S2Z3L0 170 187 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 2 9.0787E-62 212.1 2 0.54935 0.69764 NaN 1 Median 0.54935 0.69764 NaN 1 0 Median NaN NaN NaN 0 0 Median 7530700 5483000 2047700 7530700 5483000 2047700 0 0 0 4743 455 4853 16829;16830 25443;25444;25445 25444 3 GTSYQSPHGIPIDLLDR PVLIMATNRGITRIRGTSYQSPHGIPIDLL SYQSPHGIPIDLLDRLLIVSTTPYSEKDTK R G T D R L 0 1 0 2 0 1 0 2 1 2 2 0 0 0 2 2 1 0 1 0 0 0 17 0 1867.9428 Q9Y230;B3KNL2;M0R0Y3 Q9Y230 337 353 RUVBL2 RuvB-like 2 yes no 3 0.00016697 110.56 2 2 0.74339 1.0758 37.558 4 Median 0.5704 0.77055 9.3873 2 0 Median 0.93436 1.4631 5.6856 2 0 Median 105060000 60354000 44704000 47079000 29645000 17433000 57979000 30708000 27270000 4744 1801 4854 16831;16832;16833;16834 25446;25447;25448;25449;25450;25451;25452;25453 25451 8 GTTAPGPIHLLELCDQK ______________________________ TAPGPIHLLELCDQKLMEFLCNMDNKDLVW M G T Q K L 1 0 0 1 1 1 1 2 1 1 3 1 0 0 2 0 2 0 0 0 0 0 17 0 1848.9404 Q9NQS7;B3KPD3;E9PM67 Q9NQS7 2 18 INCENP Inner centromere protein yes no 2 2.7352E-78 210.91 3 1 0.9229 1.2187 2.8397 4 Median 0.93363 1.228 3.2431 3 0 Median 0.75498 1.2094 NaN 1 0 Median 589740000 305870000 283860000 407720000 199600000 208120000 182010000 106270000 75746000 4745 1752 4855 16835;16836;16837;16838 25454;25455;25456;25457;25458;25459;25460;25461;25462;25463 25460 10 GTVEEEIIER IGQKKQVNIYRLVTKGTVEEEIIERAKKKM RLVTKGTVEEEIIERAKKKMVLDHLVIQRM K G T E R A 0 1 0 0 0 0 4 1 0 2 0 0 0 0 0 0 1 0 0 1 0 0 10 0 1173.5877 A0A024RC75;O14647;A0A1B0GTU9;A8K9Y5;A0A0D9SF92 A0A024RC75 919 928 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 2 0.0092182 61.78 1 1 0.70657 1.051 NaN 1 Median NaN NaN NaN 0 0 Median 0.70657 1.051 NaN 1 0 Median 9957400 6569400 3388000 3298800 3298800 0 6658600 3270700 3388000 4746 289 4856 16839;16840 25464;25465;25466 25464 3 GTVEPQLEAR TGEVEVVIQDPMGQKGTVEPQLEARGDSTY PMGQKGTVEPQLEARGDSTYRCSYQPTMEG K G T A R G 1 1 0 0 0 1 2 1 0 0 1 0 0 0 1 0 1 0 0 1 0 0 10 0 1098.5669 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98 P21333 428 437 FLNA Filamin-A yes no 2 0.00015008 129.42 2 0.92393 1.2396 12.756 2 Median 0.92393 1.2396 12.756 2 0 Median NaN NaN NaN 0 0 Median 12004000 6401300 5602300 12004000 6401300 5602300 0 0 0 4747 1287 4857 16841;16842 25467;25468;25469 25467 3 GTVIEVNVSELGLVTQGGK NPSSPLYTTLGVITKGTVIEVNVSELGLVT EVNVSELGLVTQGGKVIWGKYAQVTNNPEN K G T G K V 0 0 1 0 0 1 2 4 0 1 2 1 0 0 0 1 2 0 0 4 0 0 19 0 1899.0313 Q5J7U2;O95478 Q5J7U2 217 235 CDK105;NSA2 Ribosome biogenesis protein NSA2 homolog yes no 2 5.2226E-72 225.21 4 0.80522 1.0245 10.714 4 Median 0.80522 1.0245 10.714 4 0 Median NaN NaN NaN 0 0 Median 103910000 57199000 46706000 103910000 57199000 46706000 0 0 0 4748 1221 4858 16843;16844;16845;16846 25470;25471;25472;25473;25474;25475;25476;25477 25472 8 GTVIVQPEPVLNEDK NENSENDITMQSLPKGTVIVQPEPVLNEDK GTVIVQPEPVLNEDKDDFKGPEFRSRSKMK K G T D K D 0 0 1 1 0 1 2 1 0 1 1 1 0 0 2 0 1 0 0 3 0 0 15 0 1636.8672 A4LAA3;P46100;A0A096LNW1;A0A096LNN3;A0A096LNL6;Q5H9A3;A0A087WWG0 A4LAA3 124 138 ATRX Transcriptional regulator ATRX yes no 2 0.010753 68.676 1 1 0.71748 0.94937 27.562 2 Median 0.62688 0.78126 NaN 1 0 Median 0.82118 1.1537 NaN 1 0 Median 7178500 3799800 3378600 1172300 664450 507860 6006200 3135400 2870800 4749 556 4859 16847;16848 25478;25479 25478 2 GTVLDQVPINPSLYLVK SHGWKEGDEPITQWKGTVLDQVPINPSLYL VLDQVPINPSLYLVKYDGIDCVYGLELHRD K G T V K Y 0 0 1 1 0 1 0 1 0 1 3 1 0 0 2 1 1 0 1 3 0 0 17 0 1855.0455 Q5JZB8;A0A024R9Y9;A0A024R9W1;Q9BPZ2;Q99865 Q5JZB8 70 86 SPIN2B;SPIN-2;SPIN2;SPIN2A Spindlin-2B;Spindlin-2A yes no 2 0.0026927 104.59 2 0.80411 1.0129 NaN 1 Median 0.80411 1.0129 NaN 1 0 Median NaN NaN NaN 0 0 Median 3558800 2096400 1462400 3558800 2096400 1462400 0 0 0 4750 232 4860 16849;16850 25480;25481;25482 25481 3 GTVLLADNVICPGAPDFLAHVR LPDTLLLEECGLLRKGTVLLADNVICPGAP NVICPGAPDFLAHVRGSSCFECTHYQSFLE K G T V R G 3 1 1 2 1 0 0 2 1 1 3 0 0 1 2 0 1 0 0 3 0 0 22 0 2334.2154 A0A140VJG8;P21964;B8XPJ7;B8XPJ8 A0A140VJG8 213 234 COMT Catechol O-methyltransferase yes no 3 0.00011853 68.369 2 0.45306 0.61391 7.0691 2 Median 0.45306 0.61391 7.0691 2 0 Median NaN NaN NaN 0 0 Median 28151000 19227000 8923800 28151000 19227000 8923800 0 0 0 4751 495 4861 16851;16852 25483;25484 25483 1 GTVVTGTLER PFLLPVEAVYSVPGRGTVVTGTLERGILKK SVPGRGTVVTGTLERGILKKGDECELLGHS R G T E R G 0 1 0 0 0 0 1 2 0 0 1 0 0 0 0 0 3 0 0 2 0 0 10 0 1031.5611 P49411 P49411 272 281 TUFM Elongation factor Tu, mitochondrial yes yes 2 8.0027E-06 116.52 3 2 5.0032 7.9867 146.71 3 Plateau 0.46598 0.62589 NaN 1 0 Median 5.0401 7.9445 0.74972 2 0 Median 91220000 28606000 62614000 25852000 18179000 7672900 65368000 10427000 54941000 4752 1350 4862 16853;16854;16855;16856;16857 25485;25486;25487;25488;25489;25490 25488 6 GTWVQLK RVKENDQKKKEAKEKGTWVQLKRQPAPPRE KKKEAKEKGTWVQLKRQPAPPREAHFVRTN K G T L K R 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 1 1 0 1 0 0 7 0 830.46504 Q6IAX2;P46778 Q6IAX2 123 129 RPL21 60S ribosomal protein L21 yes no 2 0.033735 59.641 1 0.77849 1.1783 NaN 1 Median NaN NaN NaN 0 0 Median 0.77849 1.1783 NaN 1 0 Median 18618000 10460000 8158100 0 0 0 18618000 10460000 8158100 4753 1345 4863 16858 25491 25491 1 GTYADDCLVQR IAKDPRFERLPCTHKGTYADDCLVQRVTQH CTHKGTYADDCLVQRVTQHKCYIVATVDRD K G T Q R V 1 1 0 2 1 1 0 1 0 0 1 0 0 0 0 0 1 0 1 1 0 0 11 0 1296.5768 Q66K47;G3V5S9;G3V1S4;Q4FZ45;Q9Y324;G3V2M5 Q66K47 49 59 FCF1;DKFZp686O2396 rRNA-processing protein FCF1 homolog yes no 2 0.00015329 126.24 3 1 0.96632 1.2925 5.0623 3 Median 0.96632 1.2925 5.0623 3 0 Median NaN NaN NaN 0 0 Median 66022000 34974000 31048000 62837000 31789000 31048000 3184300 3184300 0 4754 1078 4864 16859;16860;16861;16862 25492;25493;25494;25495;25496;25497 25494 6 GTYLATFHQR ERARWTETYVRWSPKGTYLATFHQRGIALW RWSPKGTYLATFHQRGIALWGGEKFKQIQR K G T Q R G 1 1 0 0 0 1 0 1 1 0 1 0 0 1 0 0 2 0 1 0 0 0 10 0 1192.5989 Q96G38;B4DXN6;B4DV79;A4D210;A0A024R821;P55884;Q86UM1;C9JQN7 Q96G38 155 164 EIF3B;EIF3S9 Eukaryotic translation initiation factor 3 subunit B yes no 2 0.0050903 96.034 1 0.39617 0.53064 NaN 1 Median 0.39617 0.53064 NaN 1 0 Median NaN NaN NaN 0 0 Median 3263000 2272300 990740 3263000 2272300 990740 0 0 0 4755 190 4865 16863 25498 25498 1 GTYQPLSTR ATSGLDHQLKIFDLRGTYQPLSTRTLPHGA KIFDLRGTYQPLSTRTLPHGAGHLAFSQRG R G T T R T 0 1 0 0 0 1 0 1 0 0 1 0 0 0 1 1 2 0 1 0 0 0 9 0 1021.5193 B0UZZ8;B4DNI0;O15213;B4DP15;A8K9A1;A8K806 B0UZZ8 390 398 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2 0.00045946 120.87 3 1 0.94376 1.2834 6.865 3 Median 0.94376 1.2834 6.865 3 0 Median NaN NaN NaN 0 0 Median 77276000 40711000 36565000 71608000 35043000 36565000 5667600 5667600 0 4756 668 4866 16864;16865;16866;16867 25499;25500;25501;25502 25500 4 GVAIGQTSLTASVTNK LDEALDNYTITFLIRGVAIGQTSLTASVTN VAIGQTSLTASVTNKAGQRINSAPQQIEVF R G V N K A 2 0 1 0 0 1 0 2 0 1 1 1 0 0 0 2 3 0 0 2 0 0 16 0 1545.8362 Q8TEM1 Q8TEM1 1048 1063 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 1.243E-09 141.13 3 2 2.0361 2.8422 136.45 2 Median 0.83545 1.083 NaN 1 0 Median 4.9624 7.4591 NaN 1 0 Median 24089000 4381400 19708000 7721300 2819700 4901700 16368000 1561800 14806000 4757 1661 4867 16868;16869;16870;16871;16872 25503;25504;25505;25506;25507 25503 5 GVAINFVK LYIHRIGRSGRYGRKGVAINFVKNDDIRIL SGRYGRKGVAINFVKNDDIRILRDIEQYYS K G V V K N 1 0 1 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 2 0 0 8 0 846.49634 A0A024R8W0;P38919 A0A024R8W0 375 382 DDX48;EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 0.0078774 79.454 2 0.50579 0.64209 0.60528 2 Median 0.50579 0.64209 0.60528 2 0 Median NaN NaN NaN 0 0 Median 22107000 14254000 7852900 22107000 14254000 7852900 0 0 0 4758 206 4868 16873;16874 25508;25509 25509 2 GVAINMVTEEDK NYIHRIGRGGRFGRKGVAINMVTEEDKRTL GRKGVAINMVTEEDKRTLRDIETFYNTSIE K G V D K R 1 0 1 1 0 0 2 1 0 1 0 1 1 0 0 0 1 0 0 2 0 0 12 0 1304.6282 A8K7F6;P60842;A8K088;B4DNH2 A8K7F6 370 381 EIF4A1 Eukaryotic initiation factor 4A-I yes no 2 0.00061376 68.626 4 2.1475 3.2628 NaN 1 Median NaN NaN NaN 0 0 Median 2.1475 3.2628 NaN 1 0 Median 17191000 2828800 14362000 0 0 0 17191000 2828800 14362000 4759 634 4869 16875;16876;16877;16878 25510;25511;25512;25513 25510 215 4 GVAINMVTEEDKR NYIHRIGRGGRFGRKGVAINMVTEEDKRTL RKGVAINMVTEEDKRTLRDIETFYNTSIEE K G V K R T 1 1 1 1 0 0 2 1 0 1 0 1 1 0 0 0 1 0 0 2 0 0 13 1 1460.7293 A8K7F6;P60842;A8K088;B4DNH2 A8K7F6 370 382 EIF4A1 Eukaryotic initiation factor 4A-I yes no 2;3 0.00059944 62.466 4 2.9241 4.4356 5.468 4 Median NaN NaN NaN 0 0 Median 2.9241 4.4356 5.468 4 0 Median 21619000 5788200 15830000 0 0 0 21619000 5788200 15830000 4760 634 4870 16879;16880;16881;16882 25514;25515;25516;25517 25515 215 4 GVAVDGLNQLTVTTGSEGLLK RGSFGKDQAHKGSVRGVAVDGLNQLTVTTG LNQLTVTTGSEGLLKFWNFKNKILIHSVSL R G V L K F 1 0 1 1 0 1 1 4 0 0 4 1 0 0 0 1 3 0 0 3 0 0 21 0 2071.1161 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 488 508 WDR36 WD repeat-containing protein 36 yes no 2 4.4997E-199 323.16 4 2 0.89282 1.1514 5.0644 6 Median 0.92851 1.1558 4.0376 4 0 Median 0.68967 1.0969 7.2907 2 0 Median 306850000 171250000 135600000 146210000 77379000 68834000 160640000 93874000 66763000 4761 404 4871 16883;16884;16885;16886;16887;16888 25518;25519;25520;25521;25522;25523;25524;25525;25526;25527;25528;25529;25530 25522 13 GVDDLDFFIGDEAIEK ESAKVGDQAQRRVMKGVDDLDFFIGDEAIE VDDLDFFIGDEAIEKPTYATKWPIRHGIVE K G V E K P 1 0 0 4 0 0 2 2 0 2 1 1 0 2 0 0 0 0 0 1 0 0 16 0 1781.836 A0A024RAI1;P61158;B4DXW1;Q59FV6;F8WDR7 A0A024RAI1 54 69 ACTR3 Actin-related protein 3 yes no 2 0.0058123 90.731 2 1.7918 2.1992 NaN 1 Median 1.7918 2.1992 NaN 1 0 Median NaN NaN NaN 0 0 Median 3797100 1114600 2682400 3797100 1114600 2682400 0 0 0 4762 243 4872 16889;16890 25531;25532 25531 2 GVDDLDFFIGDEAIEKPTYATK ESAKVGDQAQRRVMKGVDDLDFFIGDEAIE FIGDEAIEKPTYATKWPIRHGIVEDWDLME K G V T K W 2 0 0 4 0 0 2 2 0 2 1 2 0 2 1 0 2 0 1 1 0 0 22 1 2443.1795 A0A024RAI1;P61158;B4DXW1;Q59FV6;F8WDR7 A0A024RAI1 54 75 ACTR3 Actin-related protein 3 yes no 3 1.1895E-08 118.54 4 1.4135 1.753 7.875 2 Median 1.4135 1.753 7.875 2 0 Median NaN NaN NaN 0 0 Median 31541000 11938000 19603000 31541000 11938000 19603000 0 0 0 4763 243 4873 16891;16892;16893;16894 25533;25534;25535;25536;25537 25535 5 GVDEVTIVNILTNR AERDALNIETAIKTKGVDEVTIVNILTNRS KGVDEVTIVNILTNRSNAQRQDIAFAYQRR K G V N R S 0 1 2 1 0 0 1 1 0 2 1 0 0 0 0 0 2 0 0 3 0 0 14 0 1541.8413 H0YKS4;H0YMD0;H0YMU9;H0YN42;V9HW65;A0A024R5Z7;P07355;H0YMM1;B4DNH8;H0YKL9;H0YKZ7;H0YLV6;H0YMT9;H0YKX9;H0YMW4;H0YKV8;H0YMD9 H0YKS4 50 63 ANXA2;HEL-S-270 Annexin;Annexin A2 yes no 2 3.5544E-18 161.99 5 2 0.38644 0.52598 77.198 4 Median 0.38346 0.51481 8.9432 3 0 Median 1.6431 2.3266 NaN 1 0 Median 46148000 29624000 16524000 35280000 26116000 9164800 10868000 3508700 7359300 4764 153 4874 16895;16896;16897;16898;16899;16900;16901 25538;25539;25540;25541;25542;25543;25544;25545;25546 25541 9 GVDLQENNPASR KNEPQNATGAPGRNRGVDLQENNPASRSQC RNRGVDLQENNPASRSQCCSN_________ R G V S R S 1 1 2 1 0 1 1 1 0 0 1 0 0 0 1 1 0 0 0 1 0 0 12 0 1298.6215 A0A024R1U4;P51148;K7EIP6 A0A024R1U4 199 210 RAB5C Ras-related protein Rab-5C yes no 2 7.12E-09 94.297 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1091500 0 1091500 1091500 0 1091500 0 0 0 4765 71 4875 16902;16903;16904 25547;25548;25549 25548 3 GVDLVLNSLAEEK DTSFEQHVLWHTGGKGVDLVLNSLAEEKLQ GKGVDLVLNSLAEEKLQASVRCLATHGRFL K G V E K L 1 0 1 1 0 0 2 1 0 0 3 1 0 0 0 1 0 0 0 2 0 0 13 0 1385.7402 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1738 1750 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0016868 63.76 3 1 0.71047 0.89545 8.3855 3 Median 0.71047 0.89545 8.3855 3 0 Median NaN NaN NaN 0 0 Median 23536000 10232000 13305000 18372000 10232000 8139900 5164700 0 5164700 4766 486 4876 16905;16906;16907;16908 25550;25551;25552;25553 25551 4 GVDSLLYR AGQDGPGSQVDTLLRGVDSLLYRRGPGPLT QVDTLLRGVDSLLYRRGPGPLTLTRPRPRK R G V Y R R 0 1 0 1 0 0 0 1 0 0 2 0 0 0 0 1 0 0 1 1 0 0 8 0 921.49198 Q4VC44;I3L188;J3KNW1;B3KRZ0 Q4VC44 368 375 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 2 0.037078 47.849 1 0.84685 1.1461 NaN 1 Median 0.84685 1.1461 NaN 1 0 Median NaN NaN NaN 0 0 Median 4084300 2493700 1590600 4084300 2493700 1590600 0 0 0 4767 1536 4877 16909 25554 25554 1 GVEAIPEGSHIK IIFLKDASRRTGDEKGVEAIPEGSHIKDNE DEKGVEAIPEGSHIKDNEQALYELVKCNFD K G V I K D 1 0 0 0 0 0 2 2 1 2 0 1 0 0 1 1 0 0 0 1 0 0 12 0 1235.651 Q8N108 Q8N108 240 251 MIER1 Mesoderm induction early response protein 1 yes yes 2 0.0014778 84.817 3 2 0.91467 1.252 21.224 4 Median 0.82515 1.0369 7.133 2 0 Median 0.99519 1.4831 4.4371 2 0 Median 46230000 25906000 20324000 29462000 17826000 11636000 16768000 8080200 8687800 4768 1633 4878 16910;16911;16912;16913;16914 25555;25556;25557;25558;25559;25560;25561 25559 7 GVEELESLCEVYR EENLTRKETPSAPAKGVEELESLCEVYRQS AKGVEELESLCEVYRQSLEKLEEKMESQGI K G V Y R Q 0 1 0 0 1 0 4 1 0 0 2 0 0 0 0 1 0 0 1 2 0 0 13 0 1581.7345 P49454 P49454 1644 1656 CENPF Centromere protein F yes yes 2 0.00044394 86.014 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3388700 3388700 0 3388700 3388700 0 0 0 0 4769 1351 4879 16915;16916 25562;25563 25563 2 GVEGYGNDQTYFEEIK EDEGLLTTDISIDLKGVEGYGNDQTYFEEI VEGYGNDQTYFEEIKQFYYRDEFSHQVQEW K G V I K Q 0 0 1 1 0 1 3 3 0 1 0 1 0 1 0 0 1 0 2 1 0 0 16 0 1847.8214 Q7KZ85 Q7KZ85 675 690 SUPT6H Transcription elongation factor SPT6 yes yes 2 3.9E-15 153.38 3 0.80877 1.0641 NaN 1 Median 0.80877 1.0641 NaN 1 0 Median NaN NaN NaN 0 0 Median 7884600 5010200 2874400 7884600 5010200 2874400 0 0 0 4770 1609 4880 16917;16918;16919 25564;25565;25566;25567 25564 4 GVEICIATPGR YGGAPKGPQIRDLERGVEICIATPGRLIDF DLERGVEICIATPGRLIDFLECGKTNLRRT R G V G R L 1 1 0 0 1 0 1 2 0 2 0 0 0 0 1 0 1 0 0 1 0 0 11 0 1171.6019 Q59F66;Q92841;B4DZQ7;B4DN41;J3KTA4;B5BUE6;P17844;B4DNG2;Q7Z2V5;Q59E92;J3KRZ1;J3QSF1 B4DN41 206 216 DDX17;DDX5;DKFZp686J01190 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 no no 2 7.983E-09 128.6 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7676500 0 7676500 0 0 0 7676500 0 7676500 4771 833;1554 4881 16920;16921;16922 25568;25569;25570 25569 3 GVEITGFPEAQALGLEVFHAGTALK TVVMASKGYPGDYTKGVEITGFPEAQALGL QALGLEVFHAGTALKNGKVVTHGGRVLAVT K G V L K N 4 0 0 0 0 1 3 4 1 1 3 1 0 2 1 0 2 0 0 2 0 0 25 0 2554.3431 Q3B7A7;Q59HH3;P22102 Q3B7A7 351 375 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 3 6.4897E-23 130.07 3 0.22338 0.26956 NaN 1 Median 0.22338 0.26956 NaN 1 0 Median NaN NaN NaN 0 0 Median 63652000 57634000 6017800 63652000 57634000 6017800 0 0 0 4772 1289 4882 16923;16924;16925 25571;25572;25573;25574;25575 25571 5 GVEKPPHLAALILAR RPPKLQRNSRGGQGRGVEKPPHLAALILAR GVEKPPHLAALILARGGSKGIPLKNIKHLA R G V A R G 3 1 0 0 0 0 1 1 1 1 3 1 0 0 2 0 0 0 0 1 0 0 15 1 1583.9511 Q53GF0;Q8NFW8;F5H296 Q53GF0 38 52 CMAS N-acylneuraminate cytidylyltransferase yes no 3 0.00026719 51.939 2 0.80131 1.1868 1.4436 2 Median NaN NaN NaN 0 0 Median 0.80131 1.1868 1.4436 2 0 Median 9255100 4946400 4308700 0 0 0 9255100 4946400 4308700 4773 1542 4883 16926;16927 25576;25577 25577 2 GVGACIQCHK PPARWKLTCYLCKQKGVGACIQCHKANCYT LCKQKGVGACIQCHKANCYTAFHVTCAQKA K G V H K A 1 0 0 0 2 1 0 2 1 1 0 1 0 0 0 0 0 0 0 1 0 0 10 0 1128.5168 Q86X06;A0A024R4V5;B4E3L9;A0A024R4W4;O95696 Q86X06 334 343 BRD1 Bromodomain-containing protein 1 yes no 2 7.8617E-09 161.68 1 1.0981 1.378 NaN 1 Median 1.0981 1.378 NaN 1 0 Median NaN NaN NaN 0 0 Median 1579500 801390 778130 1579500 801390 778130 0 0 0 4774 128 4884 16928 25578;25579 25579 2 GVGLLNTGSYYEHVK VDHLLLRLKCDSAFRGVGLLNTGSYYEHVK GVGLLNTGSYYEHVKISAPNEFDVMFKLEV R G V V K I 0 0 1 0 0 0 1 3 1 0 2 1 0 0 0 1 1 0 2 2 0 0 15 0 1635.8257 Q8N884 Q8N884 205 219 MB21D1 Cyclic GMP-AMP synthase yes yes 2;3 1.4642E-22 170.4 8 2 1.0803 1.406 9.775 10 Median 1.1397 1.4798 10.664 8 0 Median 0.84985 1.3561 1.0062 2 0 Median 467450000 227400000 240050000 384000000 182210000 201790000 83447000 45186000 38261000 4775 1643 4885 16929;16930;16931;16932;16933;16934;16935;16936;16937;16938 25580;25581;25582;25583;25584;25585;25586;25587;25588;25589;25590;25591;25592;25593;25594;25595;25596;25597;25598 25590 19 GVGVALDDPYENYRR PIKGGDVRDKWDQYKGVGVALDDPYENYRR GVGVALDDPYENYRRNKSYSFIARMKARDE K G V R R N 1 2 1 2 0 0 1 2 0 0 1 0 0 0 1 0 0 0 2 2 0 0 15 1 1722.8325 J3QK89;Q8IWX8;Q59ET1;B4DL82;B4DPM4 J3QK89 896 910 CHERP Calcium homeostasis endoplasmic reticulum protein yes no 3 0.019258 61.532 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1533500 1533500 0 1533500 1533500 0 0 0 0 4776 1140 4886 16939 25599 25599 1 GVIDLIFEK KQVTQLAIDTEERLKGVIDLIFEKAISEPN TEERLKGVIDLIFEKAISEPNFSVAYANMC K G V E K A 0 0 0 1 0 0 1 1 0 2 1 1 0 1 0 0 0 0 0 1 0 0 9 0 1032.5855 E7EX73;B4DSI9;E9PGM1;E7EUU4;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637;C9JF13;C9J6B6;C9K073;C9J2Z7 E7EX73 633 641 EIF4G1;EIF4G1 variant protein Eukaryotic translation initiation factor 4 gamma 1 yes no 2 0.026751 75.043 1 0.3415 0.44616 NaN 1 Median 0.3415 0.44616 NaN 1 0 Median NaN NaN NaN 0 0 Median 2067100 1580900 486170 2067100 1580900 486170 0 0 0 4777 747 4887 16940 25600 25600 1 GVILLIVDK LELLNVGVESKLILKGVILLIVDKALEEPK SKLILKGVILLIVDKALEEPKYSSLYAQLC K G V D K A 0 0 0 1 0 0 0 1 0 2 2 1 0 0 0 0 0 0 0 2 0 0 9 0 968.62702 D3DQV9;Q59G42;B4DZF2;P78344;H0Y3P2;H0YCH5;H0YEC5;H0YD77;H0YE44;H0YCF8 D3DQV9 113 121 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.017101 57.96 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2146700 2146700 0 2146700 2146700 0 0 0 0 4778 877 4888 16941 25601 25601 1 GVLANALAGR TPEITVSIIKELNRRGVLANALAGRDEKEI ELNRRGVLANALAGRDEKEISHVLNFLIRN R G V G R D 3 1 1 0 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 1 0 0 10 0 940.54541 Q8TED0;H0Y8P4 Q8TED0 404 413 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 2.9469E-05 104.37 2 0.66279 0.93311 7.5457 2 Median NaN NaN NaN 0 0 Median 0.66279 0.93311 7.5457 2 0 Median 18751000 10689000 8061100 0 0 0 18751000 10689000 8061100 4779 1660 4889 16942;16943 25602;25603;25604;25605 25605 4 GVLANALAGRDEK TPEITVSIIKELNRRGVLANALAGRDEKEI RRGVLANALAGRDEKEISHVLNFLIRNLSQ R G V E K E 3 1 1 1 0 0 1 2 0 0 2 1 0 0 0 0 0 0 0 1 0 0 13 1 1312.7099 Q8TED0;H0Y8P4 Q8TED0 404 416 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 0.00072351 119.34 5 1 0.74958 1.037 8.9633 4 Median 0.89298 0.99881 10.773 3 0 Plateau 0.69722 1.0767 NaN 1 0 Median 39342000 21955000 17387000 30030000 16493000 13537000 9312100 5461800 3850400 4780 1660 4890 16944;16945;16946;16947;16948;16949 25606;25607;25608;25609;25610;25611 25607 6 GVLHTFSPSPK QASSQLSRGSATTPRGVLHTFSPSPKLQNS TTPRGVLHTFSPSPKLQNSASATALVSRTG R G V P K L 0 0 0 0 0 0 0 1 1 0 1 1 0 1 2 2 1 0 0 1 0 0 11 0 1168.6241 A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7;B4E0Q6 A0A024R7K7 540 550 GATAD2A Transcriptional repressor p66-alpha yes no 2 0.010797 48.423 2 1.0438 1.4467 1.8742 2 Median NaN NaN NaN 0 0 Median 1.0438 1.4467 1.8742 2 0 Median 8848700 4500300 4348500 0 0 0 8848700 4500300 4348500 4781 179 4891 16950;16951 25612;25613;25614;25615 25615 4 GVLKVFLENVIR GGVKRISGLIYEETRGVLKVFLENVIRDAV ETRGVLKVFLENVIRDAVTYTEHAKRKTVT R G V I R D 0 1 1 0 0 0 1 1 0 1 2 1 0 1 0 0 0 0 0 3 0 0 12 1 1385.8395 B2R4R0;P62805;Q0VAS5;Q6B823 B2R4R0 57 68 HIST1H4H;HIST1H4A Histone H4 yes no 3 0.0040723 30.336 1 0.83609 1.3066 NaN 1 Median NaN NaN NaN 0 0 Median 0.83609 1.3066 NaN 1 0 Median 11966000 7228200 4738100 0 0 0 11966000 7228200 4738100 4782 686 4892 16952 25616 25616 1 GVLLEIEDLQVNQFK KKISLKYTAARLHEKGVLLEIEDLQVNQFK GVLLEIEDLQVNQFKNVIFEISPTEEVGDF K G V F K N 0 0 1 1 0 2 2 1 0 1 3 1 0 1 0 0 0 0 0 2 0 0 15 0 1743.9407 A4QPB0;A0A024RC65;P46940;H0YLE8;B4E2M0;B4DNP4 A4QPB0 1572 1586 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 7.7009E-28 186.87 4 0.50051 0.64568 11.82 4 Median 0.50051 0.64568 11.82 4 0 Median NaN NaN NaN 0 0 Median 14697000 9803400 4893700 14697000 9803400 4893700 0 0 0 4783 287 4893 16953;16954;16955;16956 25617;25618;25619;25620;25621;25622 25618 6 GVLLTDGSEK MSALQRVLYRHMQAKGVLLTDGSEKDKKGK HMQAKGVLLTDGSEKDKKGKGGTKTLMNTI K G V E K D 0 0 0 1 0 0 1 2 0 0 2 1 0 0 0 1 1 0 0 1 0 0 10 0 1017.5342 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;Q59FZ6;B4E0F1;B4DSI8;B3KNW7 A7E2E1 1015 1024 SMARCA4 Transcription activator BRG1 yes no 2 0.041415 39.547 1 0.54247 0.68468 NaN 1 Median 0.54247 0.68468 NaN 1 0 Median NaN NaN NaN 0 0 Median 10833000 6892700 3939800 10833000 6892700 3939800 0 0 0 4784 403 4894 16957 25623;25624 25623 2 GVLLYGPPGTGK KHPELFEALGIAQPKGVLLYGPPGTGKTLL QPKGVLLYGPPGTGKTLLARAVAHHTDCTF K G V G K T 0 0 0 0 0 0 0 4 0 0 2 1 0 0 2 0 1 0 1 1 0 0 12 0 1157.6445 Q59GS3;A0A140VJS3;P62195;J3QLH6;J3KRP2;J3QSA9;J3QRW1;J3QQM1;J3QRR3;Q8NB90 Q59GS3 181 192 PSMC5;SPATA5 26S protease regulatory subunit 8;Spermatogenesis-associated protein 5 no no 2 0.02367 45.598 2 2 4.9535 6.8164 NaN 1 Median NaN NaN NaN 0 0 Median 4.9535 6.8164 NaN 1 0 Median 12524000 5719400 6804900 5081400 5081400 0 7442900 638000 6804900 4785 503;1648 4895 16958;16959;16960;16961 25625;25626;25627;25628 25627 4 GVLSTLIAGPVVEISHQLR ITAVQSRHTDTPVHRGVLSTLIAGPVVEIS TLIAGPVVEISHQLRKVSDVEELTPPEHLS R G V L R K 1 1 0 0 0 1 1 2 1 2 3 0 0 0 1 2 1 0 0 3 0 0 19 0 1988.1419 Q86XI2;B3KRQ2;B4DHE5 Q86XI2 1006 1024 NCAPG2 Condensin-2 complex subunit G2 yes no 3 3.5193E-05 89.877 6 1 0.67067 0.89482 15.464 5 Median 0.67814 0.90943 5.0136 4 0 Median 0.42426 0.66438 NaN 1 0 Median 97933000 60106000 37827000 74788000 43796000 30993000 23145000 16310000 6834400 4786 1621 4896 16962;16963;16964;16965;16966;16967;16968 25629;25630;25631;25632;25633;25634;25635;25636;25637;25638;25639 25638 11 GVLSTLIAGPVVEISHQLRK ITAVQSRHTDTPVHRGVLSTLIAGPVVEIS LIAGPVVEISHQLRKVSDVEELTPPEHLSD R G V R K V 1 1 0 0 0 1 1 2 1 2 3 1 0 0 1 2 1 0 0 3 0 0 20 1 2116.2368 Q86XI2;B3KRQ2;B4DHE5 Q86XI2 1006 1025 NCAPG2 Condensin-2 complex subunit G2 yes no 4 0.00081748 31.462 2 0.55266 0.88618 25.144 2 Median NaN NaN NaN 0 0 Median 0.55266 0.88618 25.144 2 0 Median 30208000 12794000 17414000 0 0 0 30208000 12794000 17414000 4787 1621 4897 16969;16970 25640;25641 25640 2 GVNLDPLGK LKTRRRDLAQALINRGVNLDPLGKWSKTGL QALINRGVNLDPLGKWSKTGLVVYDSSVPI R G V G K W 0 0 1 1 0 0 0 2 0 0 2 1 0 0 1 0 0 0 0 1 0 0 9 0 911.50763 P46087;F5GYR3 P46087 332 340 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 1;2 0.0045219 93.598 5 2 0.6779 0.8849 4.1223 5 Median 0.68937 0.8849 2.7339 3 0 Median 0.53757 0.86011 6.286 2 0 Median 285270000 173010000 112260000 185640000 108570000 77069000 99635000 64442000 35193000 4788 1343 4898 16971;16972;16973;16974;16975;16976;16977 25642;25643;25644;25645;25646;25647;25648;25649;25650 25650 9 GVNLPGAAVDLPAVSEK LVTEVENGGSLGSKKGVNLPGAAVDLPAVS NLPGAAVDLPAVSEKDIQDLKFGVEQDVDM K G V E K D 3 0 1 1 0 0 1 2 0 0 2 1 0 0 2 1 0 0 0 3 0 0 17 0 1635.8832 V9HWB8;P14618;B4DNK4;H3BTN5;A0A024R5Z9;B4DRT3;A0A024R609;H3BQ34;Q8WUW7;Q504U3;H3BR70 V9HWB8 208 224 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 2 1.5028E-08 115.34 3 0.81343 1.0183 1.0956 3 Median 0.81343 1.0183 1.0956 3 0 Median NaN NaN NaN 0 0 Median 59402000 33132000 26269000 59402000 33132000 26269000 0 0 0 4789 1267 4899 16978;16979;16980 25651;25652;25653;25654 25651 4 GVPQQIEVAR PPPNSDPNLRRFTIRGVPQQIEVARQLIDE RFTIRGVPQQIEVARQLIDEKVGGTNLGAP R G V A R Q 1 1 0 0 0 2 1 1 0 1 0 0 0 0 1 0 0 0 0 2 0 0 10 0 1095.6037 A0A024R8A7;Q96I24 A0A024R8A7 409 418 hCG_31253;FUBP3 Far upstream element-binding protein 3 yes no 2 0.0025774 69.812 1 2 3.578 4.6327 24.605 2 Median NaN NaN NaN 0 0 Median 3.578 4.6327 24.605 2 0 Median 14714000 8921800 5792500 7102500 7102500 0 7611800 1819300 5792500 4790 194 4900 16981;16982;16983 25655;25656;25657 25657 3 GVPTGFILPIR MAKTHLSLSHNPEQKGVPTGFILPIRDIRA PEQKGVPTGFILPIRDIRASVGAGFLYPLV K G V I R D 0 1 0 0 0 0 0 2 0 2 1 0 0 1 2 0 1 0 0 1 0 0 11 0 1168.6968 A0A024R652;F5H2F4;B7Z809;P11586;V9GYY3 A0A024R652 879 889 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.0032754 98.582 4 1 0.46278 0.62624 27.843 4 Median 0.46278 0.62624 27.843 4 0 Median NaN NaN NaN 0 0 Median 37930000 27375000 10555000 36955000 26399000 10555000 975550 975550 0 4791 154 4901 16984;16985;16986;16987;16988 25658;25659;25660;25661;25662;25663;25664;25665 25660 7 GVQVPAGAEAIPEPVVR DYYILADPWRQEWEKGVQVPAGAEAIPEPV QVPAGAEAIPEPVVRILPPLEGPPAQASPS K G V V R I 3 1 0 0 0 1 2 2 0 1 0 0 0 0 3 0 0 0 0 4 0 0 17 0 1687.9257 D6R9B8;C9J929;B5MBX1;A8K356;A8K9C0;A0A0C4DFT8;B4DFY8;G3XAA4;B3KPL2;Q9NQC1 D6R9B8 88 104 JADE2;PHF15 Protein Jade-2 yes no 2 0.00036034 70.373 2 0.73405 0.98949 1.4166 2 Median 0.73405 0.98949 1.4166 2 0 Median NaN NaN NaN 0 0 Median 4297900 2873400 1424500 4297900 2873400 1424500 0 0 0 4792 420 4902 16989;16990 25666;25667;25668 25668 3 GVQVPASPDTVPQPSLR SYYLFADTWKEEWEKGVQVPASPDTVPQPS QVPASPDTVPQPSLRIIAEKVKDVLFIRPR K G V L R I 1 1 0 1 0 2 0 1 0 0 1 0 0 0 4 2 1 0 0 3 0 0 17 0 1746.9264 F2Z2B6;F2Z3N8;A8K5A5;A0A024R1A2;Q92613 F2Z2B6 79 95 JADE3;PHF16 Protein Jade-3 yes no 2 3E-07 75.045 2 0.75179 0.99842 NaN 1 Median 0.75179 0.99842 NaN 1 0 Median NaN NaN NaN 0 0 Median 2577600 1342500 1235100 2577600 1342500 1235100 0 0 0 4793 54 4903 16991;16992 25669;25670;25671 25669 3 GVQYLNEIK GPDGTGPNILTDITKGVQYLNEIKDSVVAG LTDITKGVQYLNEIKDSVVAGFQWATKEGA K G V I K D 0 0 1 0 0 1 1 1 0 1 1 1 0 0 0 0 0 0 1 1 0 0 9 0 1062.571 P13639;Q8TA90;B4DPU3;Q6W6M8 P13639 668 676 EEF2 Elongation factor 2 yes no 2 6.6941E-05 121.62 2 2 0.59713 0.73176 150.6 3 Median 0.56596 0.71071 4.1285 2 0 Median 6.5476 9.6459 NaN 1 0 Median 46188000 21684000 24504000 31938000 20533000 11404000 14250000 1150400 13100000 4794 1264 4904 16993;16994;16995;16996 25672;25673;25674;25675 25673 4 GVSFTFGADVVSK SDPDKDVQGWGENDRGVSFTFGADVVSKFL DRGVSFTFGADVVSKFLNRHDLDLICRAHQ R G V S K F 1 0 0 1 0 0 0 2 0 0 0 1 0 2 0 2 1 0 0 3 0 0 13 0 1312.6663 V9HW04;P62140;B4DJ75;B7ZB67 V9HW04 221 233 HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes no 2 3.7092E-08 146.71 3 2 0.91824 1.212 6.1821 5 Median 0.93324 1.1992 2.7157 3 0 Median 0.82098 1.3103 4.613 2 0 Median 249700000 146030000 103670000 165290000 85417000 79873000 84406000 60611000 23795000 4795 1397 4905 16997;16998;16999;17000;17001 25676;25677;25678;25679;25680;25681;25682;25683 25677 8 GVSFTFGAEVVAK SDPDKDVQGWGENDRGVSFTFGAEVVAKFL DRGVSFTFGAEVVAKFLHKHDLDLICRAHQ R G V A K F 2 0 0 0 0 0 1 2 0 0 0 1 0 2 0 1 1 0 0 3 0 0 13 0 1310.6871 A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;B4DNE3;P62136;A0A140VJS9;B3KXM2;E9PMD7 P62136 222 234 PPP1CC;PPP1CA Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit no no 2 5.6344E-07 139.43 2 2 1.0757 1.448 7.2712 4 Median 1.2397 1.5243 3.668 2 0 Median 0.90748 1.3647 4.7787 2 0 Median 82499000 45113000 37387000 45471000 23951000 21519000 37029000 21161000 15867000 4796 1396;279 4906 17002;17003;17004;17005 25684;25685;25686;25687;25688;25689;25690 25685 7 GVSFYEVPPHLFAVADTVYR RDLQIYSRQHMERYRGVSFYEVPPHLFAVA EVPPHLFAVADTVYRALRTERRDQAVMISG R G V Y R A 2 1 0 1 0 0 1 1 1 0 1 0 0 2 2 1 1 0 2 4 0 0 20 0 2266.1423 F5H6E2;B7Z3E5;O00159;B7Z9C0;I3L204;I3L4D4;I3L501;I3L3Y6;I3L168;I3L3F5 F5H6E2 82 101 MYO1C Unconventional myosin-Ic yes no 3 8.0209E-14 90.872 4 0.70468 0.94175 9.0135 4 Median 0.70468 0.94175 9.0135 4 0 Median NaN NaN NaN 0 0 Median 87092000 52547000 34544000 87092000 52547000 34544000 0 0 0 4797 905 4907 17006;17007;17008;17009 25691;25692;25693;25694;25695;25696;25697;25698 25695 8 GVSGSCNIDVVCPEGDGRR FGPLARRLAAASGEKGVSGSCNIDVVCPEG SCNIDVVCPEGDGRRDIIRAVGAYSKSGTL K G V R R D 0 2 1 2 2 0 1 4 0 1 0 0 0 0 1 2 0 0 0 3 0 0 19 1 2032.9055 CON__P15636 CON__P15636 206 224 yes yes 3 2.8271E-05 73.208 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7139800 7139800 0 7139800 7139800 0 0 0 0 + 4798 962 4908 17010 25699 25699 1 GVSTLCEEHVEPETTLPAR APEMPLVKKKKKKKKGVSTLCEEHVEPETT LCEEHVEPETTLPARRTEKSPSLRKQVFGH K G V A R R 1 1 0 0 1 0 4 1 1 0 2 0 0 0 2 1 3 0 0 2 0 0 19 0 2124.0157 Q1ED39 Q1ED39 73 91 KNOP1 Lysine-rich nucleolar protein 1 yes yes 3 8.5765E-05 69.422 3 1.0216 1.374 19.289 2 Median 1.0216 1.374 19.289 2 0 Median NaN NaN NaN 0 0 Median 33578000 18457000 15121000 33578000 18457000 15121000 0 0 0 4799 1525 4909 17011;17012;17013 25700;25701;25702 25701 2 GVTFLFPIQAK NFPISEETIKLLKGRGVTFLFPIQAKTFHH LKGRGVTFLFPIQAKTFHHVYSGKDLIAQA R G V A K T 1 0 0 0 0 1 0 1 0 1 1 1 0 2 1 0 1 0 0 1 0 0 11 0 1219.6965 Q9NR30 Q9NR30 205 215 DDX21 Nucleolar RNA helicase 2 yes yes 2 2.8477E-22 181.41 6 2 0.67223 0.87555 52.818 6 Median 0.70431 0.89596 64.233 4 0 Median 0.54167 0.8606 2.5994 2 0 Median 435950000 257130000 178820000 259810000 143200000 116600000 176150000 113930000 62220000 4800 1756 4910 17014;17015;17016;17017;17018;17019;17020;17021 25703;25704;25705;25706;25707;25708;25709;25710;25711;25712;25713 25704 10 GVTFNVTTVDTK NCPFSQRLFMVLWLKGVTFNVTTVDTKRRT WLKGVTFNVTTVDTKRRTETVQKLCPGGQL K G V T K R 0 0 1 1 0 0 0 1 0 0 0 1 0 1 0 0 4 0 0 3 0 0 12 0 1280.6612 Q5SRT3;Q53FB0;O00299 Q5SRT3 38 49 CLIC1 Chloride intracellular channel protein;Chloride intracellular channel protein 1 yes no 2 4.9637E-05 85.355 1 0.37459 0.45792 NaN 1 Median 0.37459 0.45792 NaN 1 0 Median NaN NaN NaN 0 0 Median 3740900 2311300 1429500 3740900 2311300 1429500 0 0 0 4801 1166 4911 17022 25714;25715 25715 2 GVTIASGGVLPNIHPELLAK LLAVANDEELNQLLKGVTIASGGVLPNIHP SGGVLPNIHPELLAKKRGSKGKLEAIITPP K G V A K K 2 0 1 0 0 0 1 3 1 2 3 1 0 0 2 1 1 0 0 2 0 0 20 0 1985.131 O75367;D6RCF2 O75367 97 116 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2;3 2.4988E-111 264.92 9 5 0.82991 1.1284 9.7519 11 Median 0.87884 1.1418 11.203 7 0 Median 0.72771 1.1212 8.1012 4 0 Median 8823600000 4784900000 4038700000 4538000000 2952400000 1585600000 4285700000 1832500000 2453200000 4802 1198 4912 17023;17024;17025;17026;17027;17028;17029;17030;17031;17032;17033;17034;17035;17036 25716;25717;25718;25719;25720;25721;25722;25723;25724;25725;25726;25727;25728;25729;25730;25731;25732;25733;25734;25735;25736;25737;25738 25721 22 GVTIKPTVDDD VEKHWRLIGWGQIRRGVTIKPTVDDD____ QIRRGVTIKPTVDDD_______________ R G V D D - 0 0 0 3 0 0 0 1 0 1 0 1 0 0 1 0 2 0 0 2 0 0 11 1 1158.5768 P41091;Q2VIR3 P41091 462 472 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 0.018583 75.043 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5984500 5984500 0 5984500 5984500 0 0 0 0 4803 1333 4913 17037 25739 25739 1 GVTIPYRPK ICVVMLETLSQSPPKGVTIPYRPKPSSSPV SQSPPKGVTIPYRPKPSSSPVIFAGGQDRY K G V P K P 0 1 0 0 0 0 0 1 0 1 0 1 0 0 2 0 1 0 1 1 0 0 9 1 1029.5971 Q15366;B4DLC0;H3BSS4;F8VRH0;H3BRU6;F8VZX2;B4DRD7 Q15366 177 185 PCBP2 Poly(rC)-binding protein 2 no no 2;3 0.031308 58.981 1 1 1.5005 2.1526 208.07 2 Median 0.37927 0.49431 NaN 1 0 Median 5.9361 9.3741 NaN 1 0 Median 40726000 22246000 18480000 26748000 20285000 6462900 13978000 1960800 12017000 4804 1510;1064 4914 17038;17039 25740;25741 25740 2 GVTLGFR ATVRTICSHVQNMIKGVTLGFRYKMRSVYA SHVQNMIKGVTLGFRYKMRSVYAHFPINVV K G V F R Y 0 1 0 0 0 0 0 2 0 0 1 0 0 1 0 0 1 0 0 1 0 0 7 0 748.42317 Q53Z07;P32969;H0Y9V9;D6RAN4;E7ESE0;B4E1M5;B4DLV8;Q2NKY6 Q53Z07 83 89 RPL9 60S ribosomal protein L9 yes no 2 0.0037972 160.69 5 2 0.71454 1.014 2.5791 6 Median 0.72846 1.0039 3.2908 4 0 Median 0.63272 1.0172 0.11469 2 0 Median 769800000 431370000 338430000 675340000 375250000 300090000 94454000 56116000 38338000 4805 1314 4915 17040;17041;17042;17043;17044;17045;17046 25742;25743;25744;25745;25746;25747;25748;25749;25750;25751;25752;25753;25754;25755;25756 25745 15 GVTNDQVDPSVDVLK CLAPFMKHPLKIVLRGVTNDQVDPSVDVLK GVTNDQVDPSVDVLKATALPLLKQFGIDGE R G V L K A 0 0 1 3 0 1 0 1 0 0 1 1 0 0 1 1 1 0 0 4 0 0 15 0 1584.7995 Q9Y2P8 Q9Y2P8 119 133 RCL1 RNA 3-terminal phosphate cyclase-like protein yes yes 2 1.0506E-16 164.13 5 2 0.89809 1.2213 7.6752 7 Median 0.95362 1.1611 8.9994 5 0 Median 0.77145 1.2307 1.0768 2 0 Median 183800000 104650000 79152000 98066000 54336000 43730000 85732000 50310000 35422000 4806 1806 4916 17047;17048;17049;17050;17051;17052;17053 25757;25758;25759;25760;25761;25762;25763;25764;25765;25766;25767;25768;25769;25770 25766 14 GVTSILPVLR ESKGEHVPGFCLPKKGVTSILPVLREGVLT CLPKKGVTSILPVLREGVLTGSPEQKEEAA K G V L R E 0 1 0 0 0 0 0 1 0 1 2 0 0 0 1 1 1 0 0 2 0 0 10 0 1053.6546 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2260 2269 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.029036 49.418 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3010700 3010700 0 3010700 3010700 0 0 0 0 4807 1000 4917 17054 25771 25771 1 GVTYLFPIQVK NFPISEETIKLLKGRGVTYLFPIQVKTFGP LKGRGVTYLFPIQVKTFGPVYEGKDLIAQA R G V V K T 0 0 0 0 0 1 0 1 0 1 1 1 0 1 1 0 1 0 1 2 0 0 11 0 1263.7227 Q9BQ39;B4DED6;B4DW97;A0A087WVC1;Q53FI9 Q9BQ39 156 166 DDX50 ATP-dependent RNA helicase DDX50 yes no 2 0.013876 78.149 2 0.42671 0.54589 NaN 1 Median 0.42671 0.54589 NaN 1 0 Median NaN NaN NaN 0 0 Median 9970100 5127000 4843100 9970100 5127000 4843100 0 0 0 4808 1707 4918 17055;17056 25772;25773 25772 2 GVVDHLLLR KLSRDDISTAAGMVKGVVDHLLLRLKCDSA AAGMVKGVVDHLLLRLKCDSAFRGVGLLNT K G V L R L 0 1 0 1 0 0 0 1 1 0 3 0 0 0 0 0 0 0 0 2 0 0 9 0 1020.608 Q8N884 Q8N884 188 196 MB21D1 Cyclic GMP-AMP synthase yes yes 2;3 0.00030401 107.9 5 4 0.84453 1.2185 11.293 9 Median 1.0245 1.3651 9.5584 5 0 Median 0.76274 1.1209 6.5814 4 0 Median 164430000 83803000 80630000 98527000 47778000 50749000 65906000 36025000 29881000 4809 1643 4919 17057;17058;17059;17060;17061;17062;17063;17064;17065 25774;25775;25776;25777;25778;25779;25780;25781;25782;25783;25784 25777 11 GVVDSEDLPLNISR DSCDELIPEYLNFIRGVVDSEDLPLNISRE RGVVDSEDLPLNISREMLQQSKILKVIRKN R G V S R E 0 1 1 2 0 0 1 1 0 1 2 0 0 0 1 2 0 0 0 2 0 0 14 0 1512.7784 A0A024RD80;P08238;B4DMA2;B4DGL0;Q9H6X9;A8K3W9;K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q96HX7 A0A024RD80 379 392 HSP90AB1;EL52;HSP90AA1 Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha no no 2 2.3608E-73 246.08 4 2 0.44633 0.61656 131.19 6 Median 0.41828 0.57624 8.8068 4 0 Median 4.4853 7.3606 1.9341 2 0 Median 681950000 341340000 340610000 416890000 289970000 126920000 265060000 51375000 213690000 4810 312;1155;598 4920 17066;17067;17068;17069;17070;17071 25785;25786;25787;25788;25789;25790;25791;25792;25793;25794;25795;25796 25786 12 GVVGPELYGR PHSPESLSVDEAVRRGVVGPELYGRLKRAE EAVRRGVVGPELYGRLKRAEGAIAGFRDPF R G V G R L 0 1 0 0 0 0 1 3 0 0 1 0 0 0 1 0 0 0 1 2 0 0 10 0 1045.5556 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 991 1000 EPPK1 Epiplakin no no 2 0.026061 51.066 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2083400 2083400 0 2083400 2083400 0 0 0 0 4811 373;1386 4921 17072 25797 25797 1 GVVQELQQAISK VVRIASLEVENQSLRGVVQELQQAISKLEA SLRGVVQELQQAISKLEARLNVLEKSSPGH R G V S K L 1 0 0 0 0 3 1 1 0 1 1 1 0 0 0 1 0 0 0 2 0 0 12 0 1298.7194 E9PK01;P29692;E9PMW7;E9PPR1;E9PL12;E9PQ49;E9PI39;D3DWK1;B2RAR6;E9PRY8;E9PN91;E9PIZ1;E9PL71;H0YCK7;Q9BW34;A0A087X1X7;Q71RH4;Q9H7G6 E9PK01 96 107 EEF1D Elongation factor 1-delta yes no 2 0.00092338 87.298 4 1 0.4344 0.54975 49.076 5 Median 0.40977 0.51827 11.122 4 0 Median 1.0769 1.4841 NaN 1 0 Median 27178000 17317000 9861100 21927000 14993000 6934000 5250800 2323600 2927100 4812 1035 4922 17073;17074;17075;17076;17077 25798;25799;25800;25801;25802;25803 25801 6 GVVQLFNAVQK QDKETERNLQRIATRGVVQLFNAVQKHQKN IATRGVVQLFNAVQKHQKNVDEKVKEAGSS R G V Q K H 1 0 1 0 0 2 0 1 0 0 1 1 0 1 0 0 0 0 0 3 0 0 11 0 1201.6819 Q9Y3B9;A8K201 Q9Y3B9 169 179 RRP15 RRP15-like protein yes no 2 2.9801E-08 139.97 3 2 0.64623 0.92264 1.7868 4 Median 0.73808 0.93543 0.35049 2 0 Median 0.56695 0.90782 0.69356 2 0 Median 199120000 121980000 77131000 97104000 56314000 40790000 102010000 65671000 36341000 4813 1816 4923 17078;17079;17080;17081;17082 25804;25805;25806;25807;25808;25809;25810;25811;25812 25808 9 GVVSGEVER SHLLETLLCKHPNMKGVVSGEVERLLFRSN KHPNMKGVVSGEVERLLFRSNISSKAQYYA K G V E R L 0 1 0 0 0 0 2 2 0 0 0 0 0 0 0 1 0 0 0 3 0 0 9 0 930.47706 B2R5U7;Q03701 B2R5U7 418 426 CEBPZ CCAAT/enhancer-binding protein zeta no no 2 0.0066977 67.169 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3444200 0 3444200 3444200 0 3444200 0 0 0 4814 693;1441 4924 17083;17084 25813;25814 25813 2 GVVTLLSDYEVCK EPQLRQLGLPTALKRGVVTLLSDYEVCKEG KRGVVTLLSDYEVCKEGDVLTPEQARVLKL R G V C K E 0 0 0 1 1 0 1 1 0 0 2 1 0 0 0 1 1 0 1 3 0 0 13 0 1481.7436 A0A024RAE1;Q9UKD2 A0A024RAE1 165 177 C1orf33;MRTO4 mRNA turnover protein 4 homolog yes no 2 7.1256E-05 121.9 2 2 0.66701 0.85675 NaN 1 Median 0.66701 0.85675 NaN 1 0 Median NaN NaN NaN 0 0 Median 32753000 29175000 3578000 13276000 9698300 3578000 19477000 19477000 0 4815 240 4925 17085;17086;17087;17088 25815;25816;25817;25818 25815 4 GVVVQGLSFHQPASAEQLLEILTR LEPKGPLAIREDPDKGVVVQGLSFHQPASA HQPASAEQLLEILTRGNRNRTQHPTDANAT K G V T R G 2 1 0 0 0 3 2 2 1 1 4 0 0 1 1 2 1 0 0 3 0 0 24 0 2591.4071 A0A0C4DGP2;A0A0C4DGP5;Q86Y91 A0A0C4DGP2 182 205 KIF18B Kinesin-like protein;Kinesin-like protein KIF18B yes no 3 6.3423E-13 90.193 2 0.57498 0.81537 NaN 1 Median 0.57498 0.81537 NaN 1 0 Median NaN NaN NaN 0 0 Median 2759700 1682600 1077100 2759700 1682600 1077100 0 0 0 4816 429 4926 17089;17090 25819;25820 25820 1 GVVVVIK IHRKTVGVEPAADGKGVVVVIKRRSGQRKP VEPAADGKGVVVVIKRRSGQRKPATSYVRT K G V I K R 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 4 0 0 7 0 712.48471 P46779;H0YKD8;H0YMF4;Q59F34 P46779 59 65 RPL28 60S ribosomal protein L28 yes no 2 0.031298 80.999 4 0.53613 0.70257 67.635 4 Median 0.53613 0.70257 67.635 4 0 Median NaN NaN NaN 0 0 Median 716710000 471770000 244940000 716710000 471770000 244940000 0 0 0 4817 1346 4927 17091;17092;17093;17094 25821;25822;25823;25824 25823 4 GVVVVIKR IHRKTVGVEPAADGKGVVVVIKRRSGQRKP EPAADGKGVVVVIKRRSGQRKPATSYVRTT K G V K R R 0 1 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 4 0 0 8 1 868.58582 P46779;H0YKD8;H0YMF4;Q59F34 P46779 59 66 RPL28 60S ribosomal protein L28 yes no 2 0.033439 52.683 1 0.68301 0.86418 NaN 1 Median 0.68301 0.86418 NaN 1 0 Median NaN NaN NaN 0 0 Median 7187800 3398400 3789300 7187800 3398400 3789300 0 0 0 4818 1346 4928 17095 25825 25825 1 GWEEALENVIK YLSKSGICSLHPLLRGWEEALENVIKSTKP PLLRGWEEALENVIKSTKPGKLIGVANQKM R G W I K S 1 0 1 0 0 0 3 1 0 1 1 1 0 0 0 0 0 1 0 1 0 0 11 0 1286.6507 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 639 649 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.0063744 53.683 1 0.61954 0.86929 NaN 1 Median NaN NaN NaN 0 0 Median 0.61954 0.86929 NaN 1 0 Median 4328800 2927000 1401800 0 0 0 4328800 2927000 1401800 4819 748 4929 17096 25826 25826 1 GWLFASCAK HGHTDIVLALDVFRKGWLFASCAKDQSVRI LDVFRKGWLFASCAKDQSVRIWRMNKAGQV K G W A K D 2 0 0 0 1 0 0 1 0 0 1 1 0 1 0 1 0 1 0 0 0 0 9 0 1038.4957 Q12788;J3KNP2;A0JLS5 Q12788 388 396 TBL3 Transducin beta-like protein 3 no no 2 0.02911 49.418 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1781200 1781200 0 0 0 0 1781200 1781200 0 4820 1456 4930 17097 25827 25827 1 GYAFIEFASFEDAK ATFIKVPQNQNGKSKGYAFIEFASFEDAKE KGYAFIEFASFEDAKEALNSCNKREIEGRA K G Y A K E 3 0 0 1 0 0 2 1 0 1 0 1 0 3 0 1 0 0 1 0 0 0 14 0 1593.7351 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99;Q9BQ02;H7BY16 B3KTP9 447 460 NCL Nucleolin yes no 2 8.6882E-22 137.17 3 2 0.70741 0.94814 8.5841 5 Median 0.70741 0.88207 4.2204 3 0 Median 0.6824 1.03 7.1796 2 0 Median 169340000 95896000 73444000 136340000 77500000 58837000 33003000 18396000 14607000 4821 119 4931 17098;17099;17100;17101;17102 25828;25829;25830;25831;25832;25833 25830 6 GYAFIEYEHER KRIHMVYSKRSGKPRGYAFIEYEHERDMHS GKPRGYAFIEYEHERDMHST__________ R G Y E R D 1 1 0 0 0 0 3 1 1 1 0 0 0 1 0 0 0 0 2 0 0 0 11 0 1412.6361 M0QYR1;A8KAQ5;A0A024QZD5;P08621 M0QYR1 79 89 SNRNP70;SNRP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 2 0.0094371 50.04 1 0.37202 0.50193 NaN 1 Median 0.37202 0.50193 NaN 1 0 Median NaN NaN NaN 0 0 Median 5630800 3781100 1849700 5630800 3781100 1849700 0 0 0 4822 10 4932 17103 25834 25834 1 GYAFNHSADFETVR GRDITRYLIKLLLLRGYAFNHSADFETVRM RGYAFNHSADFETVRMIKEKLCYVGYNIEQ R G Y V R M 2 1 1 1 0 0 1 1 1 0 0 0 0 2 0 1 1 0 1 1 0 0 14 0 1612.727 B4DWQ5;Q8IY98;F5H6T1;B4DHK9;P61160 B4DWQ5 146 159 ACTR2 Actin-related protein 2 yes no 3 0.00056874 86.738 3 0.9964 1.3382 7.1207 3 Median 0.9964 1.3382 7.1207 3 0 Median NaN NaN NaN 0 0 Median 28060000 14188000 13872000 28060000 14188000 13872000 0 0 0 4823 808 4933 17104;17105;17106 25835;25836;25837;25838;25839;25840;25841 25839 7 GYAFVEFESEDVAK TRFRLSRSKRTGNSKGYAFVEFESEDVAKI KGYAFVEFESEDVAKIVAETMNNYLFGERL K G Y A K I 2 0 0 1 0 0 3 1 0 0 0 1 0 2 0 1 0 0 1 2 0 0 14 0 1589.725 Q9BYG3;B4DSM4;C9J6C5 Q9BYG3 87 100 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2 2.3212E-20 167.12 4 2 0.94325 1.2371 8.3252 6 Median 0.9784 1.215 9.4368 4 0 Median 0.82141 1.3139 7.2919 2 0 Median 272080000 143700000 128380000 176570000 90496000 86070000 95513000 53207000 42306000 4824 1726 4934 17107;17108;17109;17110;17111;17112 25842;25843;25844;25845;25846;25847;25848;25849;25850;25851;25852;25853 25845 12 GYAFVHFETQEAADK NILSCKVVCDENGSKGYAFVHFETQEAADK GYAFVHFETQEAADKAIEKMNGMLLNDRKV K G Y D K A 3 0 0 1 0 1 2 1 1 0 0 1 0 2 0 0 1 0 1 1 0 0 15 0 1711.7842 B1ANR0;Q6IQ30;Q13310;H0Y5F5;H0YEQ8;H0YCC8 B1ANR0 139 153 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 yes no 2;3 3.5461E-07 128.57 5 0.25821 0.3277 5.5456 5 Median 0.25821 0.3277 5.5456 5 0 Median NaN NaN NaN 0 0 Median 58722000 44976000 13745000 58722000 44976000 13745000 0 0 0 4825 676 4935 17113;17114;17115;17116;17117 25854;25855;25856;25857;25858 25856 5 GYAFVQYSNER IFSKYGRVAGCSVHKGYAFVQYSNERHARA SVHKGYAFVQYSNERHARAAVLGENGRVLA K G Y E R H 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 1 0 0 2 1 0 0 11 0 1332.6099 A8K4T9;Q53GL6;Q9UKM9;Q5QPL9;Q5QPM1;Q5QPM2;B4DSJ1 A8K4T9 56 66 RALY RNA-binding protein Raly yes no 2 7.5719E-06 123.35 3 2 0.73986 0.99736 25.934 5 Median 0.68935 0.93728 17.867 3 0 Median 0.92613 1.3161 5.9275 2 0 Median 90454000 51422000 39032000 71928000 42236000 29692000 18527000 9186300 9340500 4826 608 4936 17118;17119;17120;17121;17122 25859;25860;25861;25862;25863;25864;25865;25866;25867 25864 9 GYAFVTFCTK WDLRLMMDPLTGLNRGYAFVTFCTKEAAQE TGLNRGYAFVTFCTKEAAQEAVKLYNNHEI R G Y T K E 1 0 0 0 1 0 0 1 0 0 0 1 0 2 0 0 2 0 1 1 0 0 10 0 1192.5587 Q05CK9;Q59GL1;B2R8Z8;O60506;B7Z645 Q05CK9 240 249 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 2 0.014285 57.59 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3967000 3967000 0 3967000 3967000 0 0 0 0 4827 718 4937 17123 25868 25868 1 GYATDESTVSSVQGSR MGFRPSSTRGPEKEKGYATDESTVSSVQGS YATDESTVSSVQGSRSYSGRGRGRRGPNYT K G Y S R S 1 1 0 1 0 1 1 2 0 0 0 0 0 0 0 4 2 0 1 2 0 0 16 0 1642.7435 A0A0F7KYT8;A0A0F7L0Q8;B4DM78;Q14341 A0A0F7KYT8 395 410 FXR1 yes no 2 5.4684E-05 111.12 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5646000 5646000 0 5646000 5646000 0 0 0 0 4828 438 4938 17124;17125;17126 25869;25870;25871 25869 3 GYAYTFITEDQAR DYVHRAGRTGRAGNKGYAYTFITEDQARYA NKGYAYTFITEDQARYAGDIIKALELSGTA K G Y A R Y 2 1 0 1 0 1 1 1 0 1 0 0 0 1 0 0 2 0 2 0 0 0 13 0 1533.71 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6 A8K6X3 717 729 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 1.2679E-05 118.4 3 0.5322 0.70869 15.371 3 Median 0.5322 0.70869 15.371 3 0 Median NaN NaN NaN 0 0 Median 16676000 11388000 5287400 16676000 11388000 5287400 0 0 0 4829 424 4939 17127;17128;17129 25872;25873;25874;25875;25876;25877 25876 6 GYAYVEFENPDEAEK MIDMPVERMHPHLSKGYAYVEFENPDEAEK GYAYVEFENPDEAEKALKHMDGGQIDGQEI K G Y E K A 2 0 1 1 0 0 4 1 0 0 0 1 0 1 1 0 0 0 2 1 0 0 15 0 1759.7577 H3BPG5;H3BV80;H3BMS0;H3BMM9;H3BTC0;D3DU92;Q15287 H3BPG5 27 41 RNPS1 RNA-binding protein with serine-rich domain 1 yes no 2 1.2045E-13 155.48 4 2 0.92536 1.3877 4.2207 2 Median NaN NaN NaN 0 0 Median 0.92536 1.3877 4.2207 2 0 Median 36778000 22783000 13995000 14771000 10911000 3860100 22006000 11872000 10135000 4830 981 4940 17130;17131;17132;17133;17134;17135 25878;25879;25880;25881;25882;25883;25884 25879 7 GYDAPLCNLLLFK LFKIGYDYKLEQIKKGYDAPLCNLLLFKKV KKGYDAPLCNLLLFKKVKALLGGNVRMMLS K G Y F K K 1 0 1 1 1 0 0 1 0 0 4 1 0 1 1 0 0 0 1 0 0 0 13 0 1522.7854 B4DH39;Q8TAF6;O60488;H0Y9A0 B4DH39 353 365 FACL4;ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 2 0.0017135 70.399 3 0.45271 0.57322 19.675 2 Median 0.45271 0.57322 19.675 2 0 Median NaN NaN NaN 0 0 Median 8515400 6178600 2336800 8515400 6178600 2336800 0 0 0 4831 806 4941 17136;17137;17138 25885;25886;25887 25887 3 GYDDRDYYSR GSSRRRDYYDRGYDRGYDDRDYYSRSYRGG RGYDRGYDDRDYYSRSYRGGGGGGGGWRAA R G Y S R S 0 2 0 3 0 0 0 1 0 0 0 0 0 0 0 1 0 0 3 0 0 0 10 1 1308.5371 Q8N1H4;Q68DZ9;Q59GA1;B2RDQ3;P62995;H7C2L4;H7BXF3 Q8N1H4 193 202 DKFZp686F18120;TRA2B Transformer-2 protein homolog beta yes no 2 8.2776E-06 119.68 4 0.53264 0.71599 7.6075 4 Linear 0.53264 0.71599 7.6075 4 0 Linear NaN NaN NaN 0 0 Median 74614000 47263000 27351000 74614000 47263000 27351000 0 0 0 4832 740 4942 17139;17140;17141;17142 25888;25889;25890;25891;25892;25893 25892 6 GYDFESETDTETIAK IITNYKDLKKFLESKGYDFESETDTETIAK GYDFESETDTETIAKLVKYMYDNRESQDTS K G Y A K L 1 0 0 2 0 0 3 1 0 1 0 1 0 1 0 1 3 0 1 0 0 0 15 0 1704.7366 Q06210 Q06210 140 154 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 2.3522E-07 132.32 2 2 0.75446 0.97738 12.589 2 Median 0.75446 0.97738 12.589 2 0 Median NaN NaN NaN 0 0 Median 15681000 4679900 11001000 9723200 4679900 5043300 5958200 0 5958200 4833 1445 4943 17143;17144;17145;17146 25894;25895;25896;25897;25898;25899;25900 25894 7 GYDSAGVGFDGGNDK ILETLIKGLQRLEYRGYDSAGVGFDGGNDK GYDSAGVGFDGGNDKDWEANACKIQLIKKK R G Y D K D 1 0 1 3 0 0 0 5 0 0 0 1 0 1 0 1 0 0 1 1 0 0 15 0 1457.6059 Q06210 Q06210 34 48 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 1.3168E-10 105.17 4 1 0.87879 1.1084 5.7418 4 Median 0.87879 1.1084 5.7418 4 0 Median NaN NaN NaN 0 0 Median 23873000 11043000 12830000 20195000 11043000 9152400 3677100 0 3677100 4834 1445 4944 17147;17148;17149;17150;17151 25901;25902;25903;25904;25905;25906;25907;25908;25909 25905 9 GYDVIAQAQSGTGK KPSAIQQRAILPCIKGYDVIAQAQSGTGKT KGYDVIAQAQSGTGKTATFAISILQQIELD K G Y G K T 2 0 0 1 0 2 0 3 0 1 0 1 0 0 0 1 1 0 1 1 0 0 14 0 1393.6838 A8K7F6;P60842;A8K088;J3KT12;J3KTB5;Q59F68;J3QS69;J3QR64;J3QL43;J3QLN6;J3QKZ9;B4E047;J3KS25;E7EQG2;Q14240;B4E102;J3KS93;J3KT04;J3KSN7;E7EMV8;Q86WD0 A8K7F6 69 82 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 2 2.6956E-27 233.13 4 2 0.30403 0.38968 114.48 5 Median 0.30155 0.38886 7.1333 4 0 Median 3.4572 5.11 NaN 1 0 Median 252780000 181320000 71459000 234210000 179050000 55169000 18565000 2274300 16291000 4835 634 4945 17152;17153;17154;17155;17156;17157 25910;25911;25912;25913;25914;25915;25916;25917;25918;25919;25920;25921;25922;25923;25924 25911 15 GYDYGPHFQGILEASLEGDSGR LFLAQAEVYKELRLRGYDYGPHFQGILEAS FQGILEASLEGDSGRLLWKDNWVSFMDTML R G Y G R L 1 1 0 2 0 1 2 5 1 1 2 0 0 1 1 2 0 0 2 0 0 0 22 0 2367.0768 A0A0U1RQF0;P49327 A0A0U1RQF0 998 1019 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 2.614E-06 79.69 4 0.79872 1.0434 29.906 3 Median 0.79872 1.0434 29.906 3 0 Median NaN NaN NaN 0 0 Median 23261000 13052000 10209000 23261000 13052000 10209000 0 0 0 4836 486 4946 17158;17159;17160;17161 25925;25926;25927;25928;25929;25930;25931;25932;25933 25933 9 GYEENYFFIFR IAREYNWNVKNKASKGYEENYFFIFREGDG KASKGYEENYFFIFREGDGVYYNELETRVR K G Y F R E 0 1 1 0 0 0 2 1 0 1 0 0 0 3 0 0 0 0 2 0 0 0 11 0 1483.6772 A0A024R0H6;Q8N7H5;B4DGJ5 A0A024R0H6 306 316 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 2.1338E-10 168.27 5 0.77975 1.073 21.781 3 Median 0.77975 1.073 21.781 3 0 Median NaN NaN NaN 0 0 Median 25567000 13008000 12559000 25567000 13008000 12559000 0 0 0 4837 36 4947 17162;17163;17164;17165;17166 25934;25935;25936;25937;25938;25939;25940;25941 25934 8 GYFDEEMNR PVHSHRVPVDVAYRRGYFDEEMNRVLADPS DVAYRRGYFDEEMNRVLADPSDDTKGFFDP R G Y N R V 0 1 1 1 0 0 2 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 9 0 1159.4604 Q15149;D3DWL0;P58107;A0A087X1U6;A0A075B730 Q15149 2970 2978 PLEC;PLEC1;EPPK1 Plectin;Epiplakin no no 2 0.0042284 67.169 2 3.8406 5.3936 1.0844 2 Median NaN NaN NaN 0 0 Median 3.8406 5.3936 1.0844 2 0 Median 20596000 4017700 16578000 0 0 0 20596000 4017700 16578000 4838 1507;373;1386 4948 17167;17168 25942;25943 25942 122 2 GYFEYIEENK DKKRGVKRPREDHGRGYFEYIEENKYSRAK EDHGRGYFEYIEENKYSRAKSPQPPVEEED R G Y N K Y 0 0 1 0 0 0 3 1 0 1 0 1 0 1 0 0 0 0 2 0 0 0 10 0 1290.5768 Q96BA7;B3KX72;B4DLR3;Q00839 Q96BA7 153 162 HNRNPU Heterogeneous nuclear ribonucleoprotein U no no 2 8.2451E-44 235.12 4 2 0.43712 0.56678 101.19 6 Median 0.41865 0.54397 4.2558 4 0 Median 2.4314 3.8799 3.5588 2 0 Median 465210000 272780000 192430000 333650000 235760000 97896000 131560000 37026000 94531000 4839 788 4949 17169;17170;17171;17172;17173;17174 25944;25945;25946;25947;25948;25949;25950;25951;25952;25953;25954;25955 25946 12 GYGFGLIK TYADLGKSARDVFTKGYGFGLIKLDLKTKS ARDVFTKGYGFGLIKLDLKTKSENGLEFTS K G Y I K L 0 0 0 0 0 0 0 3 0 1 1 1 0 1 0 0 0 0 1 0 0 0 8 0 853.46979 A0A1L1UHR1;P21796;B3KTS5;B4DEI3;C9JI87 A0A1L1UHR1 21 28 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2 0.013566 76.847 3 2 0.71147 0.93731 80.027 5 Median 0.70478 0.93298 2.1405 3 0 Plateau 2.5571 3.9617 1.7391 2 0 Median 543330000 299900000 243440000 489910000 283440000 206470000 53428000 16460000 36969000 4840 524 4950 17175;17176;17177;17178;17179 25956;25957;25958;25959;25960;25961;25962;25963;25964 25960 9 GYGFVHFETQEAAER NILSCKVVCDENGSKGYGFVHFETQEAAER GYGFVHFETQEAAERAIEKMNGMLLNDRKV K G Y E R A 2 1 0 0 0 1 3 2 1 0 0 0 0 2 0 0 1 0 1 1 0 0 15 0 1739.7903 A0A087WTT1;A0A024R9C1;P11940;A0A024R9E2;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;B3KT93;H0YBN4;H0YAR2;E5RGH3 A0A087WTT1 114 128 PABPC1 Polyadenylate-binding protein;Polyadenylate-binding protein 1 yes no 2;3 0.00022053 109.24 3 1 0.76742 0.99815 157.55 2 Median 0.24609 0.32762 NaN 1 0 Median 2.3931 3.041 NaN 1 0 Median 30830000 23408000 7422000 26158000 22097000 4061600 4671700 1311300 3360400 4841 217 4951 17180;17181;17182;17183 25965;25966;25967;25968 25966 4 GYGPATQVR TKPAIIFRIAARNEKGYGPATQVRWLQETS AARNEKGYGPATQVRWLQETSKDSSGTKPA K G Y V R W 1 1 0 0 0 1 0 2 0 0 0 0 0 0 1 0 1 0 1 1 0 0 9 0 947.48248 A6NEM2;P51610;H7C1C4;B4DKE2;Q53FE7;Q9Y5Z7 A6NEM2 2035 2043 HCFC1;HCFC2 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6;Host cell factor 2 yes no 2 0.024473 52.716 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5043700 5043700 0 5043700 5043700 0 0 0 0 4842 564 4952 17184 25969 25969 1 GYISPYFINTSK LNDELEIIEGMKFDRGYISPYFINTSKGQK FDRGYISPYFINTSKGQKCEFQDAYVLLSE R G Y S K G 0 0 1 0 0 0 0 1 0 2 0 1 0 1 1 2 1 0 2 0 0 0 12 0 1388.6976 B7Z5E7;B7Z4F6;B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z532;B9VPB4;B9VP19;Q53SE2;E7ESH4 B7Z5E7 166 177 HSPD1 60 kDa heat shock protein, mitochondrial yes no 2 0.0030521 62.303 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4843 110 4953 17185 25970 25970 1 GYLVTQDELDQTLEEFK LWKIRKTIMQLCHDRGYLVTQDELDQTLEE LVTQDELDQTLEEFKAQSGDKPSEGRPRRT R G Y F K A 0 0 0 2 0 2 3 1 0 0 3 1 0 1 0 0 2 0 1 1 0 0 17 0 2026.9735 A0A087WVZ9;E5KT65;P19388;A0A0A0MQR7 A0A087WVZ9 25 41 POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1 yes no 2 2.8574E-34 189.33 4 0.67348 0.85431 4.8652 4 Linear 0.67348 0.85431 4.8652 4 0 Linear NaN NaN NaN 0 0 Median 28442000 16408000 12034000 28442000 16408000 12034000 0 0 0 4844 352 4954 17186;17187;17188;17189 25971;25972;25973;25974;25975;25976;25977;25978;25979 25976 9 GYNATVLAYGQTGSGK VFNTAVAPLIKGVFKGYNATVLAYGQTGSG YNATVLAYGQTGSGKTYSMGGAYTAEQENE K G Y G K T 2 0 1 0 0 1 0 4 0 0 1 1 0 0 0 1 2 0 2 1 0 0 16 0 1585.7736 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 82 97 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 1.5383E-29 218.02 5 2 0.86478 1.091 3.1413 6 Median 0.8816 1.1077 2.9876 4 0 Median 0.66874 1.0695 2.6272 2 0 Median 269930000 150370000 119560000 145290000 78325000 66969000 124630000 72041000 52592000 4845 1216 4955 17190;17191;17192;17193;17194;17195;17196 25980;25981;25982;25983;25984;25985;25986;25987;25988;25989;25990;25991;25992;25993;25994 25985 15 GYNDDYYEESYFTTR YDLPKKEDALLYQSKGYNDDYYEESYFTTR GYNDDYYEESYFTTRTYGEPESAGPSRAVR K G Y T R T 0 1 1 2 0 0 2 1 0 0 0 0 0 1 0 1 2 0 4 0 0 0 15 0 1921.7643 P50402;Q5HY57 P50402 89 103 EMD Emerin yes no 2 9.8649E-28 185.3 4 2 0.38996 0.5372 37.331 6 Median 0.37644 0.52103 10.464 4 0 Median 0.72083 1.0236 0.040418 2 0 Median 46684000 30491000 16193000 29610000 20655000 8954700 17074000 9836400 7238100 4846 1357 4956 17197;17198;17199;17200;17201;17202 25995;25996;25997;25998;25999;26000;26001;26002;26003 25996 9 GYNPGLLVHPDLAYLQAEGGGDR VFETLEARMTEACIRGYNPGLLVHPDLAYL HPDLAYLQAEGGGDRQLGDREKELIRQAAL R G Y D R Q 2 1 1 2 0 1 1 5 1 0 4 0 0 0 2 0 0 0 2 1 0 0 23 0 2411.187 A0A024RDJ4;P19838;D6RH30 A0A024RDJ4 164 186 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit yes no 3 0.033762 48.077 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1617600 1617600 0 1617600 1617600 0 0 0 0 4847 318 4957 17203 26004 26004 1 GYPDSESTWEPR YKKIREQEYYLVKWRGYPDSESTWEPRQNL KWRGYPDSESTWEPRQNLKCVRILKQFHKD R G Y P R Q 0 1 0 1 0 0 2 1 0 0 0 0 0 0 2 2 1 1 1 0 0 0 12 0 1422.6052 O43463 O43463 66 77 SUV39H1 Histone-lysine N-methyltransferase SUV39H1 yes yes 2 0.0014778 62.303 2 0.75819 1.0605 6.4931 2 Median NaN NaN NaN 0 0 Median 0.75819 1.0605 6.4931 2 0 Median 12724000 6749600 5974100 0 0 0 12724000 6749600 5974100 4848 1185 4958 17204;17205 26005;26006;26007 26007 3 GYPEVALHFVK AKLVGQSIIAYLQKKGYPEVALHFVKDEKT LQKKGYPEVALHFVKDEKTRFSLALECGNI K G Y V K D 1 0 0 0 0 0 1 1 1 0 1 1 0 1 1 0 0 0 1 2 0 0 11 0 1258.671 P53621 P53621 633 643 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.0076981 58.676 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3104900 3104900 0 3104900 3104900 0 0 0 0 4849 1371 4959 17206 26008 26008 1 GYPHLCSICDLPVHSNK PPSSNIEDFHGLLPKGYPHLCSICDLPVHS PHLCSICDLPVHSNKEWSQHINGASHSRRC K G Y N K E 0 0 1 1 2 0 0 1 2 1 2 1 0 0 2 2 0 0 1 1 0 0 17 0 1995.9295 A0A0R4J2E8;A8MXP9;P43243;D6REM6;Q68D11;D6R991;H0Y8T4 A0A0R4J2E8 288 304 MATR3;DKFZp686K23100 Matrin-3 yes no 3 9.4726E-21 165.89 4 0.36523 0.45201 5.0118 4 Median 0.36523 0.45201 5.0118 4 0 Median NaN NaN NaN 0 0 Median 129510000 92079000 37435000 129510000 92079000 37435000 0 0 0 4850 445 4960 17207;17208;17209;17210 26009;26010;26011;26012;26013;26014;26015 26010 7 GYPSYPALIIDPK DSPLDALDLVWAKCRGYPSYPALIIDPKMP CRGYPSYPALIIDPKMPREGMFHHGVPIPV R G Y P K M 1 0 0 1 0 0 0 1 0 2 1 1 0 0 3 1 0 0 2 0 0 0 13 0 1432.7602 P55201 P55201 1095 1107 BRPF1 Peregrin no no 2 0.0052604 43.512 1 0.79867 1.0412 NaN 1 Median 0.79867 1.0412 NaN 1 0 Median NaN NaN NaN 0 0 Median 5606700 2932000 2674700 5606700 2932000 2674700 0 0 0 4851 1379 4961 17211 26016 26016 1 GYSFTTTAER GRDLTDYLMKILTERGYSFTTTAEREIVRD ILTERGYSFTTTAEREIVRDIKEKLCYVAL R G Y E R E 1 1 0 0 0 0 1 1 0 0 0 0 0 1 0 1 3 0 1 0 0 0 10 0 1131.5197 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;V9HVZ7 Q53GK6 197 206 PS1TP5BP1;ACTB;ACTG1;HEL-176 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2 3.2563E-11 138.4 11 2 0.73069 1.0054 73.588 9 Median 0.712 0.98266 11.602 7 0 Median 2.9479 4.9512 1.3688 2 0 Median 10340000000 5320500000 5019500000 8731000000 4923500000 3807500000 1609100000 397040000 1212000000 4852 1388;1420;1859 4962 17212;17213;17214;17215;17216;17217;17218;17219;17220;17221;17222;17223;17224 26017;26018;26019;26020;26021;26022;26023;26024;26025;26026;26027;26028;26029;26030;26031;26032;26033;26034;26035;26036;26037;26038;26039;26040;26041;26042;26043;26044;26045 26031 29 GYSFTTTAEREIVR GRDLTDYLMKILTERGYSFTTTAEREIVRD RGYSFTTTAEREIVRDIKEKLCYVALDFEQ R G Y V R D 1 2 0 0 0 0 2 1 0 1 0 0 0 1 0 1 3 0 1 1 0 0 14 1 1628.8158 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;V9HVZ7 Q53GK6 197 210 PS1TP5BP1;ACTB;ACTG1;HEL-176 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 3 0.00059179 50.562 1 0.73918 0.99977 NaN 1 Median 0.73918 0.99977 NaN 1 0 Median NaN NaN NaN 0 0 Median 25989000 15121000 10867000 25989000 15121000 10867000 0 0 0 4853 1388;1420;1859 4963 17225 26046;26047 26047 2 GYSSLLK RGGFNTFRDRENYDRGYSSLLKRDFGAKTQ RDRENYDRGYSSLLKRDFGAKTQNGVYSAA R G Y L K R 0 0 0 0 0 0 0 1 0 0 2 1 0 0 0 2 0 0 1 0 0 0 7 0 766.4225 B4DN41;J3KTA4;B5BUE6;P17844;B4DNG2 B4DN41 506 512 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 1 0.011598 83.614 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3156000 3156000 0 3156000 3156000 0 0 0 0 4854 833 4964 17226 26048 26048 1 GYTLLSEGIDEMVGIIYKPK RRKRDEDRHDINKMKGYTLLSEGIDEMVGI SEGIDEMVGIIYKPKTKETRETYEVLLSFI K G Y P K T 0 0 0 1 0 0 2 3 0 3 2 2 1 0 1 1 1 0 2 1 0 0 20 1 2225.1654 O75643 O75643 86 105 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 3 1.9556E-06 49.537 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3042000 3042000 0 3042000 3042000 0 0 0 0 4855 1206 4965 17227 26049 26049 1 GYTLVEYETYK KNIHLNLDRRTGYLKGYTLVEYETYKEAQA GYLKGYTLVEYETYKEAQAAMEGLNGQDLM K G Y Y K E 0 0 0 0 0 0 2 1 0 0 1 1 0 0 0 0 2 0 3 1 0 0 11 0 1364.65 A0A023T787;Q9Y5S9;A0A0J9YW13 A0A023T787 115 125 RBM8;RBM8A RNA-binding protein 8A yes no 2 0.00050249 120.99 3 1 0.52507 0.66158 90.662 4 Median 0.41788 0.52366 28.181 3 0 Median 2.3868 3.49 NaN 1 0 Median 34538000 22398000 12140000 28984000 20553000 8430500 5554000 1844900 3709100 4856 2 4966 17228;17229;17230;17231 26050;26051;26052;26053;26054 26050 4 GYVGSIQPHGVFFR EINSIQDIKEGQLLRGYVGSIQPHGVFFRL RGYVGSIQPHGVFFRLGPSVVGLARYSHVS R G Y F R L 0 1 0 0 0 1 0 3 1 1 0 0 0 2 1 1 0 0 1 2 0 0 14 0 1562.7994 Q14690 Q14690 1329 1342 PDCD11 Protein RRP5 homolog yes yes 2;3 2.2673E-05 92.925 3 3 0.83051 1.2721 12.614 5 Median 1.031 1.3734 17.735 3 0 Median 0.81433 1.2479 2.7174 2 0 Median 97786000 52533000 45253000 54880000 29234000 25646000 42906000 23299000 19607000 4857 1494 4967 17232;17233;17234;17235;17236;17237 26055;26056;26057;26058;26059;26060;26061;26062;26063 26060 9 GYYSPYSVSGSGSTAGSR GTGLRLLEAAAQSTKGYYSPYSVSGSGSTA SPYSVSGSGSTAGSRTGSRTGSRAGSRRGS K G Y S R T 1 1 0 0 0 0 0 4 0 0 0 0 0 0 1 6 1 0 3 1 0 0 18 0 1781.7857 Q15149;D3DWL0;Q96IE3 Q15149 4610 4627 PLEC;PLEC1 Plectin yes no 2 1.497E-18 145.52 4 1 0.6263 0.83297 69.122 5 Median 0.61126 0.82839 5.6114 4 0 Median 2.5982 3.8206 NaN 1 0 Median 71525000 41237000 30288000 63574000 39412000 24162000 7950900 1825500 6125400 4858 1507 4968 17238;17239;17240;17241;17242 26064;26065;26066;26067;26068;26069;26070;26071;26072 26067 9 HAALQDIGK APVEHVVADAGAFLRHAALQDIGKNIYTIR AGAFLRHAALQDIGKNIYTIREVVTEIRDK R H A G K N 2 0 0 1 0 1 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 9 0 951.51378 B2RAR2;Q9ULX3;H3BUR4 B2RAR2 17 25 NOB1 RNA-binding protein NOB1 yes no 2 0.0018021 91.853 2 1.4074 1.9331 1.3695 2 Median NaN NaN NaN 0 0 Median 1.4074 1.9331 1.3695 2 0 Median 7512700 3431900 4080700 0 0 0 7512700 3431900 4080700 4859 726 4969 17243;17244 26073;26074 26074 2 HAASTVQILGAEK ARLIAHAGSLLNLAKHAASTVQILGAEKAL AKHAASTVQILGAEKALFRALKSRRDTPKY K H A E K A 3 0 0 0 0 1 1 1 1 1 1 1 0 0 0 1 1 0 0 1 0 0 13 0 1323.7147 Q9Y2X3;B3KN82 Q9Y2X3 311 323 NOP58 Nucleolar protein 58 yes no 2;3 4.8261E-95 259.47 7 3 0.71855 0.92679 8.2163 8 Median 0.7227 0.93505 2.0055 6 0 Median 0.49386 0.78594 1.4703 2 0 Median 572770000 331320000 241450000 496810000 282040000 214770000 75954000 49280000 26675000 4860 1810 4970 17245;17246;17247;17248;17249;17250;17251;17252;17253;17254 26075;26076;26077;26078;26079;26080;26081;26082;26083;26084;26085;26086;26087;26088;26089;26090;26091;26092 26084 18 HAATAPPHSCPPDDTK LETVKRKSESSPIVRHAATAPPHSCPPDDT AATAPPHSCPPDDTKLIEDEFIIDESDQSF R H A T K L 3 0 0 2 1 0 0 0 2 0 0 1 0 0 4 1 2 0 0 0 0 0 16 0 1700.7577 Q03188;H0Y8J2 Q03188 282 297 CENPC Centromere protein C yes no 2;3 5.6295E-18 168.93 6 2 0.71576 0.87988 19.264 7 Median 0.72201 0.89792 19.841 5 0 Median 0.50366 0.69073 1.5193 2 0 Median 54109000 33654000 20455000 46317000 28517000 17800000 7792300 5136500 2655700 4861 1439 4971 17255;17256;17257;17258;17259;17260;17261;17262 26093;26094;26095;26096;26097;26098;26099;26100;26101;26102;26103;26104;26105 26095 13 HADNCAGPDGVEGENGGETKK SKCGKTFTRRNTMARHADNCAGPDGVEGEN GPDGVEGENGGETKKSKRGRKRKMRSKKED R H A K K S 2 0 2 2 1 0 3 5 1 0 0 2 0 0 1 0 1 0 0 1 0 0 21 1 2140.908 P49711;B3KSE4 P49711 573 593 CTCF Transcriptional repressor CTCF yes no 3 1.2268E-08 100.9 1 0.57566 0.70139 NaN 1 Median 0.57566 0.70139 NaN 1 0 Median NaN NaN NaN 0 0 Median 423640 280500 143140 423640 280500 143140 0 0 0 4862 1354 4972 17263 26106;26107 26106 2 HAEASAIVEYAYNDK EIIRSFKGHVRKMLRHAEASAIVEYAYNDK HAEASAIVEYAYNDKAILEQRNMLTEELYG R H A D K A 4 0 1 1 0 0 2 0 1 1 0 1 0 0 0 1 0 0 2 1 0 0 15 0 1679.7791 Q15397;B2RDG4 Q15397 248 262 KIAA0020 Pumilio domain-containing protein KIAA0020 yes no 2;3 1.91E-36 206.32 5 4 0.7176 0.89706 55.836 7 Median 0.77409 0.96566 16.239 5 0 Median 0.23842 0.33461 21.117 2 0 Median 55965000 35311000 20655000 39048000 20586000 18462000 16918000 14725000 2192400 4863 1511 4973 17264;17265;17266;17267;17268;17269;17270;17271;17272 26108;26109;26110;26111;26112;26113;26114;26115;26116;26117;26118;26119 26113 12 HAIPIIK NIELTRYTRPTPVQKHAIPIIKEKRDLMAC TRPTPVQKHAIPIIKEKRDLMACAQTGSGK K H A I K E 1 0 0 0 0 0 0 0 1 3 0 1 0 0 1 0 0 0 0 0 0 0 7 0 790.50651 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;A0A024R9A4;O15523;B4DLU5;B4E010;C9J8G5;C9J081;B4E3C4 A0A0D9SFB3 209 215 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 0.015545 98.03 3 0.4871 0.60222 3.0121 3 Median 0.4871 0.60222 3.0121 3 0 Median NaN NaN NaN 0 0 Median 65450000 44977000 20473000 65450000 44977000 20473000 0 0 0 4864 432 4974 17273;17274;17275 26120;26121;26122;26123 26122 4 HALLDVTPNAVDR IIRLHTIKQIIDQDKHALLDVTPNAVDRLN DKHALLDVTPNAVDRLNYAQWYPIVVFLNP K H A D R L 2 1 1 2 0 0 0 0 1 0 2 0 0 0 1 0 1 0 0 2 0 0 13 0 1419.747 A0A087X0K9;Q6MZU1;G5E9E7;A9CQZ8;G3V1L9;Q07157;Q68DX9 A0A087X0K9 691 703 TJP1;DKFZp686A1195;DKFZp686M05161 Tight junction protein ZO-1 yes no 3 0.04449 19.678 1 0.44184 0.59631 NaN 1 Median 0.44184 0.59631 NaN 1 0 Median NaN NaN NaN 0 0 Median 4011300 2958500 1052800 4011300 2958500 1052800 0 0 0 4865 371 4975 17276 26124 26124 1 HAPINSAQHLDNVDQTGPK SDSAEDEKRKRKCQKHAPINSAQHLDNVDQ NSAQHLDNVDQTGPKAWKGSTTNDPPKQSP K H A P K A 2 0 2 2 0 2 0 1 2 1 1 1 0 0 2 1 1 0 0 1 0 0 19 0 2040.9977 O43159;E9PPY3 O43159 139 157 RRP8 Ribosomal RNA-processing protein 8 yes no 3 0.0045429 28.083 1 1 0.68765 0.94169 27.291 2 Median 0.89515 1.1421 NaN 1 0 Median 0.52825 0.77643 NaN 1 0 Median 20834000 11903000 8930600 15073000 7766100 7306800 5760800 4137000 1623800 4866 1181 4976 17277;17278 26125;26126;26127 26125 3 HAPLADQILAGNAVR MPKFKAARGVGGQEKHAPLADQILAGNAVR HAPLADQILAGNAVRAGVREKRRGRGTGEA K H A V R A 4 1 1 1 0 1 0 1 1 1 2 0 0 0 1 0 0 0 0 1 0 0 15 0 1544.8423 Q13895;F8WBL2 Q13895 16 30 BYSL Bystin yes no 3 0.03225 38.511 1 0.64964 0.90113 NaN 1 Median NaN NaN NaN 0 0 Median 0.64964 0.90113 NaN 1 0 Median 6089100 3537700 2551400 0 0 0 6089100 3537700 2551400 4867 1480 4977 17279 26128 26128 0 HASPILPITEFSDIPR SNESLVVNRVTGNFKHASPILPITEFSDIP ASPILPITEFSDIPRRAPKKPLTRAEVGEK K H A P R R 1 1 0 1 0 0 1 0 1 3 1 0 0 1 3 2 1 0 0 0 0 0 16 0 1791.9519 A0A024RBE7;P42167;G5E972;H0YJH7 A0A024RBE7 304 319 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 2;3 1.1321E-13 137.21 8 4 0.52436 0.71803 24.406 10 Median 0.4937 0.66262 7.967 6 0 Median 0.68435 1.0024 10.371 4 0 Median 272570000 172130000 100430000 195830000 131540000 64299000 76731000 40597000 36134000 4868 270 4978 17280;17281;17282;17283;17284;17285;17286;17287;17288;17289;17290;17291 26129;26130;26131;26132;26133;26134;26135;26136;26137;26138;26139;26140;26141;26142;26143;26144;26145;26146 26144 18 HASSSPESPKPAPAPGSHR SESSPPSPQPTKVSRHASSSPESPKPAPAP SPESPKPAPAPGSHREISSSPTSKNRSHGR R H A H R E 3 1 0 0 0 0 1 1 2 0 0 1 0 0 5 5 0 0 0 0 0 0 19 1 1895.9238 A0A140VK53;Q9UQ35;I3L182;Q9UQ39;I3L4D8 A0A140VK53 433 451 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 3 0.033408 45.138 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 184190 184190 0 184190 184190 0 0 0 0 4869 509 4979 17292 26147 26147 1 HATAEEVEEEER KPKRNEIDAEPPAKRHATAEEVEEEERDRI AKRHATAEEVEEEERDRIPGPVCKGKWKNK R H A E R D 2 1 0 0 0 0 6 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 12 0 1427.6165 Q8TDN6;B4E0B8;Q9NUW4 Q8TDN6 33 44 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 2 0.0017563 66.56 2 0.86648 1.2174 14.255 2 Median NaN NaN NaN 0 0 Median 0.86648 1.2174 14.255 2 0 Median 12737000 6690700 6045800 0 0 0 12737000 6690700 6045800 4870 1659 4980 17293;17294 26148;26149;26150;26151 26149 4 HATAEEVEEEERDRIPGPVCK KPKRNEIDAEPPAKRHATAEEVEEEERDRI VEEEERDRIPGPVCKGKWKNKERILIFSSR R H A C K G 2 2 0 1 1 0 6 1 1 1 0 1 0 0 2 0 1 0 0 2 0 0 21 2 2450.1496 Q8TDN6;B4E0B8;Q9NUW4 Q8TDN6 33 53 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 4 0.00041457 35.834 3 0.85666 1.0352 3.0884 3 Median 0.85666 1.0352 3.0884 3 0 Median NaN NaN NaN 0 0 Median 107450000 56356000 51091000 107450000 56356000 51091000 0 0 0 4871 1659 4981 17295;17296;17297 26152;26153;26154 26153 3 HAVSEGTK IQTAVRLLLPGELAKHAVSEGTKAVTKYTS LPGELAKHAVSEGTKAVTKYTSSK______ K H A T K A 1 0 0 0 0 0 1 1 1 0 0 1 0 0 0 1 1 0 0 1 0 0 8 0 827.41373 B2R4S9;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;B4DR52;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;O60814;A8K9J7;P57053;L0R4T3;A0A024RCJ2;Q16778;P33778;P23527;P06899;Q8N257 B2R4S9 110 117 HIST1H2BI;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;H2BFS;ABCF2;HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B no no 2 0.023913 54.776 1 0.55561 0.75395 NaN 1 Median NaN NaN NaN 0 0 Median 0.55561 0.75395 NaN 1 0 Median 3364600 2153800 1210900 0 0 0 3364600 2153800 1210900 4872 25;295 4982 17298 26155 26155 1 HCAPSGTPTGPEILAAAVPPSSLK RKSASSFFKELREERHCAPSGTPTGPEILA GPEILAAAVPPSSLKNNREQVEVVEFHSNK R H C L K N 4 0 0 0 1 0 1 2 1 1 2 1 0 0 5 3 2 0 0 1 0 0 24 0 2357.2049 Q5TBH9;Q8NDD1;Q5TBI2;B4E0F7 Q5TBH9 99 122 C1orf131 Uncharacterized protein C1orf131 yes no 3 2.9413E-11 100.47 3 0.92407 1.1781 20.607 2 Median 0.92407 1.1781 20.607 2 0 Median NaN NaN NaN 0 0 Median 25590000 6435000 19155000 25590000 6435000 19155000 0 0 0 4873 1574 4983 17299;17300;17301 26156;26157;26158 26156 2 HCCSTADFGDLPLLPPTSR CPEVAKADRWLEDSRHCCSTADFGDLPLLP TADFGDLPLLPPTSRKEDLEAEEEYSSLCE R H C S R K 1 1 0 2 2 0 0 1 1 0 3 0 0 1 3 2 2 0 0 0 0 0 19 0 2142.9827 Q7Z5J4;A8MXE8 Q7Z5J4 843 861 RAI1 Retinoic acid-induced protein 1 yes no 3 0.025134 16.487 1 0.87585 1.2034 NaN 1 Median 0.87585 1.2034 NaN 1 0 Median NaN NaN NaN 0 0 Median 4387900 1782800 2605100 4387900 1782800 2605100 0 0 0 4874 1617 4984 17302 26159;26160 26159 2 HCHEAQAVLGVLLR EALLRFCVTWNTNSRHCHEAQAVLGVLLRR RHCHEAQAVLGVLLRREAPEELLAYEGVRA R H C L R R 2 1 0 0 1 1 1 1 2 0 3 0 0 0 0 0 0 0 0 2 0 0 14 0 1601.846 Q12788;J3KNP2;A0JLS5 Q12788 727 740 TBL3 Transducin beta-like protein 3 yes no 3 0.0022366 70.68 3 0.61598 0.82292 62.556 2 Median 0.61598 0.82292 62.556 2 0 Median NaN NaN NaN 0 0 Median 21056000 15173000 5882800 21056000 15173000 5882800 0 0 0 4875 1456 4985 17303;17304;17305 26161;26162;26163;26164;26165 26162 5 HCLGVFFPVFAYASR LLWYNPVTEEDVQLRHCLGVFFPVFAYASR HCLGVFFPVFAYASRTNQECFEEAFLPTLQ R H C S R T 2 1 0 0 1 0 0 1 1 0 1 0 0 3 1 1 0 0 1 2 0 0 15 0 1769.8712 Q9BPX3;Q6NUR1 Q9BPX3 750 764 NCAPG Condensin complex subunit 3 yes no 2;3 1.0439E-06 87.083 6 2 0.66012 0.89759 14.202 7 Median 0.6698 0.90286 10.517 6 0 Median 0.49718 0.7097 NaN 1 0 Median 113730000 71317000 42412000 97554000 58709000 38846000 16175000 12608000 3566400 4876 1706 4986 17306;17307;17308;17309;17310;17311;17312;17313 26166;26167;26168;26169;26170;26171;26172;26173;26174;26175;26176;26177;26178;26179;26180;26181;26182 26172 17 HCNMVLENVK RNNKKLLGRVKAFDRHCNMVLENVKEMWTE KAFDRHCNMVLENVKEMWTEVPKSGKGKKK R H C V K E 0 0 2 0 1 0 1 0 1 0 1 1 1 0 0 0 0 0 0 2 0 0 10 0 1242.5849 P62316 P62316 62 71 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes yes 2 0.018263 41.117 1 0.59729 0.79322 NaN 1 Median NaN NaN NaN 0 0 Median 0.59729 0.79322 NaN 1 0 Median 2724000 1779100 944820 0 0 0 2724000 1779100 944820 4877 1408 4987 17314 26183 26183 615 1 HCNSICQFDSLDDFETSHLAGK NVLPRTVSVRSSLKKHCNSICQFDSLDDFE FDSLDDFETSHLAGKSFEFERVGFLDPLVN K H C G K S 1 0 1 3 2 1 1 1 2 1 2 1 0 2 0 3 1 0 0 0 0 0 22 0 2580.1009 B5BUA4;Q5FBB7 B5BUA4 198 219 SGOL1 Shugoshin-like 1 yes no 3 3.2448E-08 110.64 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 379930 0 379930 379930 0 379930 0 0 0 4878 895 4988 17315 26184 26184 1 HDELADSLPCAEGEFIFLR EVKDCEGLPREKKGKHDELADSLPCAEGEF ADSLPCAEGEFIFLRLNVLREYLERELTMA K H D L R L 2 1 0 2 1 0 3 1 1 1 3 0 0 2 1 1 0 0 0 0 0 0 19 0 2218.0365 B4E0B9;B4DZC3;B3KMC9;Q9H0D6 B4E0B9 211 229 XRN2 5-3 exoribonuclease 2 yes no 3 0.018684 30.863 2 0.62436 0.85909 NaN 1 Median 0.62436 0.85909 NaN 1 0 Median NaN NaN NaN 0 0 Median 6650900 4771800 1879100 6650900 4771800 1879100 0 0 0 4879 754 4989 17316;17317 26185;26186 26186 2 HDELLAEHIK DDQFTTSILRHWCMKHDELLAEHIKSLLIK HWCMKHDELLAEHIKSLLIKNNSLPRKRQS K H D I K S 1 0 0 1 0 0 2 0 2 1 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1203.6248 Q68E01 Q68E01 884 893 INTS3 Integrator complex subunit 3 yes yes 3 0.023914 40.715 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7783000 7783000 0 7783000 7783000 0 0 0 0 4880 1584 4990 17318 26187 26187 1 HDIAFVEFENDGQAGAAR NQFPGFKEVRLVPGRHDIAFVEFENDGQAG AFVEFENDGQAGAARDALQGFKITPSHAMK R H D A R D 4 1 1 2 0 1 2 2 1 1 0 0 0 2 0 0 0 0 0 1 0 0 18 0 1945.8919 B5BTZ8;P08579 B5BTZ8 187 204 SNRPB2 U2 small nuclear ribonucleoprotein B yes no 3 0.00048631 40.186 1 1.0507 1.3762 NaN 1 Median 1.0507 1.3762 NaN 1 0 Median NaN NaN NaN 0 0 Median 7983500 3442700 4540800 7983500 3442700 4540800 0 0 0 4881 890 4991 17319 26188;26189 26189 2 HDITLQLAEAER VSNHVSSPFELSIHKHDITLQLAEAERMAD IHKHDITLQLAEAERMADGPLKNRPETVVS K H D E R M 2 1 0 1 0 1 2 0 1 1 2 0 0 0 0 0 1 0 0 0 0 0 12 0 1394.7154 A0A024RAC0;Q86V48 A0A024RAC0 849 860 LUZP1 Leucine zipper protein 1 yes no 2 0.0029347 94.465 3 1.0469 1.4526 0.20446 2 Median 1.0469 1.4526 0.20446 2 0 Median NaN NaN NaN 0 0 Median 8089900 3531500 4558400 8089900 3531500 4558400 0 0 0 4882 238 4992 17320;17321;17322 26190;26191;26192;26193;26194;26195 26190 6 HDLDLICR SFTFGAEVVAKFLHKHDLDLICRAHQVVED VAKFLHKHDLDLICRAHQVVEDGYEFFAKR K H D C R A 0 1 0 2 1 0 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 8 0 1040.5073 A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;B4DNE3;P62136;A0A140VJS9;B3KXM2;E9PMD7;V9HW04;P62140;B4DJ75;B7ZB67 V9HW04 239 246 PPP1CC;PPP1CA;HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 2 0.0001482 176.41 4 2 0.87969 1.2057 10.124 6 Median 0.90371 1.2423 5.1219 4 0 Median 0.66863 1.04 2.3952 2 0 Median 422900000 220120000 202780000 375710000 191140000 184570000 47187000 28984000 18203000 4883 1396;1397;279 4993 17323;17324;17325;17326;17327;17328 26196;26197;26198;26199;26200;26201;26202;26203 26198 8 HDLLTEPDLGVTIDLINPDTYR RFVQYKATSLEKQHKHDLLTEPDLGVTIDL DLGVTIDLINPDTYRIDPNVLLDPADEKLL K H D Y R I 0 1 1 4 0 0 1 1 1 2 4 0 0 0 2 0 3 0 1 1 0 0 22 0 2509.27 A0A024R0H6;Q8N7H5 A0A024R0H6 72 93 PAF1 RNA polymerase II-associated factor 1 homolog yes no 3 1.4994E-26 148.19 4 0.77111 1.028 5.5167 4 Linear 0.77111 1.028 5.5167 4 0 Linear NaN NaN NaN 0 0 Median 67651000 39008000 28643000 67651000 39008000 28643000 0 0 0 4884 36 4994 17329;17330;17331;17332 26204;26205;26206;26207;26208;26209;26210;26211;26212 26204 9 HDLPLHPAVVK KTYFEDNPRDLQLLRHDLPLHPAVVKPHLG QLLRHDLPLHPAVVKPHLGHVPDYLVPPAL R H D V K P 1 0 0 1 0 0 0 0 2 0 2 1 0 0 2 0 0 0 0 2 0 0 11 0 1224.6979 Q9NY93;Q53HB9;H7BZN7 Q9NY93 476 486 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 3 0.00014539 91.636 3 2 1.096 1.3225 19.854 5 Median 1.1241 1.4182 13.466 3 0 Median 0.74575 1.0741 0.14618 2 0 Median 57133000 25490000 31643000 45359000 19605000 25755000 11773000 5885100 5888100 4885 1768 4995 17333;17334;17335;17336;17337 26213;26214;26215;26216;26217;26218;26219 26216 7 HDYALLIK H D I K 1 0 0 1 0 0 0 0 1 1 2 1 0 0 0 0 0 0 1 0 0 0 8 0 971.54402 REV__B9A063 yes no 3 0.0020532 92.47 6 2 0.95007 1.2615 25 8 Median 0.97354 1.2799 8.624 6 0 Median 0.48138 0.76849 4.5479 2 0 Median 1863500000 928290000 935170000 1776100000 873110000 902940000 87409000 55180000 32229000 + 4886 1847 4996 17338;17339;17340;17341;17342;17343;17344;17345 26220;26221;26222;26223;26224;26225;26226;26227;26228;26229;26230;26231;26232;26233;26234;26235;26236 26220 17 HEAMITDLEER EEEEKSKSLAKLKNKHEAMITDLEERLRRE LKNKHEAMITDLEERLRREEKQRQELEKTR K H E E R L 1 1 0 1 0 0 3 0 1 1 1 0 1 0 0 0 1 0 0 0 0 0 11 0 1342.6187 A0A024R1N1;P35579;Q86XU5;Q99529;A0A0U4BW16 A0A024R1N1 1025 1035 MYH9 Myosin-9 no no 2 1.0271E-05 103.7 4 1 1.1984 1.5795 74.711 4 Median 0.91985 1.2225 38.831 3 0 Median 4.0634 5.1637 NaN 1 0 Median 31367000 14545000 16822000 26757000 13465000 13292000 4610700 1080300 3530400 4887 61;490 4997;4998 17346;17347;17348;17349;17350 26237;26238;26239;26240;26241;26242 26239 20 5 HECQANGPEDLNR ASSKDAIKKKFQGIKHECQANGPEDLNRAC IKHECQANGPEDLNRACIAEKLGGSLIVAF K H E N R A 1 1 2 1 1 1 2 1 1 0 1 0 0 0 1 0 0 0 0 0 0 0 13 0 1538.6532 B7Z9M9;V9HWA6;P60981 B7Z9M9 116 128 HEL32;DSTN Destrin yes no 2 3.6898E-08 158.56 2 0.43263 0.58398 NaN 1 Median 0.43263 0.58398 NaN 1 0 Median NaN NaN NaN 0 0 Median 4033900 3023100 1010800 4033900 3023100 1010800 0 0 0 4888 921 4999 17351;17352 26243;26244 26243 2 HECQNLESEPIR LLQENEQLMKVMKTKHECQNLESEPIRNSV KTKHECQNLESEPIRNSVKERESERNQCNF K H E I R N 0 1 1 0 1 1 3 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 12 0 1510.6834 P49454 P49454 1164 1175 CENPF Centromere protein F yes yes 2 0.0058502 49.777 1 1.3934 1.8669 NaN 1 Median 1.3934 1.8669 NaN 1 0 Median NaN NaN NaN 0 0 Median 5942800 2495400 3447400 5942800 2495400 3447400 0 0 0 4889 1351 5000 17353 26245 26245 1 HEEEAFTAFTPAPEDSLASVPYPPLLR EIEHVMYHDWRLVPKHEEEAFTAFTPAPED PEDSLASVPYPPLLRAMIIAERQKNGDTST K H E L R A 4 1 0 1 0 0 4 0 1 0 3 0 0 2 5 2 2 0 1 1 0 0 27 0 2983.4604 C9JJ19;P82930 C9JJ19 152 178 MRPS34 28S ribosomal protein S34, mitochondrial yes no 3 0.012194 33.479 1 0.39679 0.55012 NaN 1 Median 0.39679 0.55012 NaN 1 0 Median NaN NaN NaN 0 0 Median 5368100 4042000 1326100 5368100 4042000 1326100 0 0 0 4890 939 5001 17354 26246 26246 1 HEEEFDLFMR DEVPDDETVNQMIARHEEEFDLFMRMDLDR QMIARHEEEFDLFMRMDLDRRREEARNPKR R H E M R M 0 1 0 1 0 0 3 0 1 0 1 0 1 2 0 0 0 0 0 0 0 0 10 0 1351.5867 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;B4E0F1;B4DSI8;B3KNW7 A7E2E1 1309 1318 SMARCA4 Transcription activator BRG1 yes no 2 0.0094101 47.869 1 1.1482 1.7252 NaN 1 Median NaN NaN NaN 0 0 Median 1.1482 1.7252 NaN 1 0 Median 16202000 7672500 8529200 0 0 0 16202000 7672500 8529200 4891 403 5002 17355 26247;26248 26248 125 2 HEGVFICR RGNQSGKNVMVEPHRHEGVFICRGKEDALV VMVEPHRHEGVFICRGKEDALVTKNLVPGE R H E C R G 0 1 0 0 1 0 1 1 1 1 0 0 0 1 0 0 0 0 0 1 0 0 8 0 1016.4862 Q96BS4;P22087;M0R299;M0QXL5;M0R2Q4;B4DLD4;M0R0P1;M0R2U2;M0R1H0;M0R2B0 Q96BS4 32 39 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2 0.0013126 120.62 3 0.64183 0.87485 15.118 3 Median 0.64183 0.87485 15.118 3 0 Median NaN NaN NaN 0 0 Median 109950000 65841000 44104000 109950000 65841000 44104000 0 0 0 4892 1288 5003 17356;17357;17358 26249;26250;26251;26252 26250 4 HEIGEFPVFFFGSK VCHPKNVPPNIQKMKHEIGEFPVFFFGSKD KHEIGEFPVFFFGSKDYYWTHQARVFPYME K H E S K D 0 0 0 0 0 0 2 2 1 1 0 1 0 4 1 1 0 0 0 1 0 0 14 0 1639.8035 O96028;H0Y9U6 O96028 913 926 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 2;3 1.4526E-13 160.52 6 0.79978 0.98293 4.5742 3 Median 0.79978 0.98293 4.5742 3 0 Median NaN NaN NaN 0 0 Median 14351000 6506800 7844500 14351000 6506800 7844500 0 0 0 4893 1228 5004 17359;17360;17361;17362;17363;17364 26253;26254;26255;26256;26257;26258;26259;26260;26261;26262;26263 26255 11 HEILLSQSVR LVTSGAVAFGKQRLRHEILLSQSVRQALHS KQRLRHEILLSQSVRQALHSGQNQLKEMAI R H E V R Q 0 1 0 0 0 1 1 0 1 1 2 0 0 0 0 2 0 0 0 1 0 0 10 0 1180.6564 P54886 P54886 129 138 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.013362 51.113 2 2.3305 3.025 8.6051 2 Median NaN NaN NaN 0 0 Median 2.3305 3.025 8.6051 2 0 Median 6359800 2009000 4350800 0 0 0 6359800 2009000 4350800 4894 1375 5005 17365;17366 26264;26265;26266 26265 3 HELLLGAGSGPGAGQQQATPGALLQAGPPR RKGPELPLVPVKRQRHELLLGAGSGPGAGQ QQATPGALLQAGPPRCSSLQAPIMLLSGHE R H E P R C 5 1 0 0 0 4 1 7 1 0 5 0 0 0 4 1 1 0 0 0 0 0 30 0 2848.4944 B2R9I9;A0MNP2;Q96DI7 B2R9I9 22 51 WDR57;SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 3 3.5248E-28 129.5 4 0.62867 0.84541 9.25 4 Median 0.62867 0.84541 9.25 4 0 Median NaN NaN NaN 0 0 Median 61045000 37679000 23366000 61045000 37679000 23366000 0 0 0 4895 530 5006 17367;17368;17369;17370 26267;26268;26269;26270;26271;26272 26270 6 HELLQPFNVLYEK EDEKKARMGVVECAKHELLQPFNVLYEKEG AKHELLQPFNVLYEKEGEFVAQFKFTVLLM K H E E K E 0 0 1 0 0 1 2 0 1 0 3 1 0 1 1 0 0 0 1 1 0 0 13 0 1628.8562 A8K6Y1;Q6PIN5;A0A024RB85;Q9UQ80;Q05D08 A8K6Y1 299 311 PA2G4 Proliferation-associated protein 2G4 yes no 2 0.0013766 95.477 2 0.64762 0.81602 NaN 1 Median 0.64762 0.81602 NaN 1 0 Median NaN NaN NaN 0 0 Median 5598600 4599100 999470 5598600 4599100 999470 0 0 0 4896 264 5007 17371;17372 26273;26274 26273 2 HELQANCYEEVK ASSKDAIKKKLTGIKHELQANCYEEVKDRC GIKHELQANCYEEVKDRCTLAEKLGGSAVI K H E V K D 1 0 1 0 1 1 3 0 1 0 1 1 0 0 0 0 0 0 1 1 0 0 12 0 1518.6773 G3V1A4;V9HWI5;E9PK25;P23528;E9PP50 G3V1A4 116 127 CFL1;HEL-S-15 Cofilin-1 yes no 2 9.1461E-29 173.72 4 0.67106 0.86257 19.898 3 Median 0.67106 0.86257 19.898 3 0 Median NaN NaN NaN 0 0 Median 37336000 21773000 15564000 37336000 21773000 15564000 0 0 0 4897 1037 5008 17373;17374;17375;17376 26275;26276;26277;26278;26279;26280;26281 26281 7 HELSTEYIPDPER CIVKFYNNVQGLVPKHELSTEYIPDPERVF PKHELSTEYIPDPERVFYTGQVVKVVVLNC K H E E R V 0 1 0 1 0 0 3 0 1 1 1 0 0 0 2 1 1 0 1 0 0 0 13 0 1584.742 Q14690;B4DH82;B4DES7 Q14690 572 584 PDCD11 Protein RRP5 homolog yes no 2;3 4.137E-74 240.37 6 2 0.85188 1.1611 13.632 5 Median 0.87651 1.1611 14.959 3 0 Median 0.81144 1.1437 13.187 2 0 Median 67491000 35906000 31585000 55731000 28383000 27348000 11760000 7523700 4236300 4898 1494 5009 17377;17378;17379;17380;17381;17382;17383;17384 26282;26283;26284;26285;26286;26287;26288;26289;26290 26282 9 HELTEISNVDVETQSGK DIDISSPEFKIKIPRHELTEISNVDVETQS LTEISNVDVETQSGKTVIRLPSGSGAASPT R H E G K T 0 0 1 1 0 1 3 1 1 1 1 1 0 0 0 2 2 0 0 2 0 0 17 0 1884.9065 Q09666 Q09666 187 203 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 9.7588E-116 258.41 7 0.33598 0.42627 21.366 2 Median 0.33598 0.42627 21.366 2 0 Median NaN NaN NaN 0 0 Median 20327000 16480000 3847200 20327000 16480000 3847200 0 0 0 4899 1453 5010 17385;17386;17387;17388;17389;17390;17391 26291;26292;26293;26294;26295;26296;26297;26298;26299 26294 9 HENITTAATEIIGAICK MPYAMTPIFDEKMLKHENITTAATEIIGAI NITTAATEIIGAICKHLSWSAYMYYLKHFI K H E C K H 3 0 1 0 1 0 2 1 1 4 0 1 0 0 0 0 3 0 0 0 0 0 17 0 1840.9353 O75691 O75691 1629 1645 UTP20 Small subunit processome component 20 homolog yes yes 3 1.9624E-06 106.19 4 1.1763 1.4834 4.9156 4 Median 1.1763 1.4834 4.9156 4 0 Median NaN NaN NaN 0 0 Median 27192000 11584000 15608000 27192000 11584000 15608000 0 0 0 4900 1207 5011 17392;17393;17394;17395 26300;26301;26302;26303;26304;26305;26306;26307 26301 8 HENVIGLLDVFTPAR ______________________________ HENVIGLLDVFTPARSLEEFNDVYLVTHLM K H E A R S 1 1 1 1 0 0 1 1 1 1 2 0 0 1 1 0 1 0 0 2 0 0 15 0 1679.8995 E7EX54;B5TY33;B4E0K5;L7RSM2;A0A024RD15;Q16539;H7C4E2 E7EX54 3 17 MAPK14 Mitogen-activated protein kinase;Mitogen-activated protein kinase 14 yes no 3 3.9386E-06 60.209 1 0.29005 0.3875 NaN 1 Median 0.29005 0.3875 NaN 1 0 Median NaN NaN NaN 0 0 Median 1976500 1613400 363090 1976500 1613400 363090 0 0 0 4901 308 5012 17396 26308 26308 1 HEPGLGGPAER GRRASRSSGRARRGRHEPGLGGPAERGAGE RRGRHEPGLGGPAERGAGEARLEEAVNRWV R H E E R G 1 1 0 0 0 0 2 3 1 0 1 0 0 0 2 0 0 0 0 0 0 0 11 0 1118.5469 Q15554 Q15554 73 83 TERF2 Telomeric repeat-binding factor 2 yes yes 2 0.044277 36.334 1 0.74216 0.96541 NaN 1 Median NaN NaN NaN 0 0 Median 0.74216 0.96541 NaN 1 0 Median 2835200 1765200 1070000 0 0 0 2835200 1765200 1070000 4902 1513 5013 17397 26309 26309 1 HEPLVLFCESCDTLTCR KSRDGERTVYCNVHKHEPLVLFCESCDTLT PLVLFCESCDTLTCRDCQLNAHKDHQYQFL K H E C R D 0 1 0 1 3 0 2 0 1 0 3 0 0 1 1 1 2 0 0 1 0 0 17 0 2135.9438 B2R8R5;Q13263;M0R2I3;M0R3C0 B2R8R5 214 230 TRIM28 Transcription intermediary factor 1-beta yes no 3 0.00015272 79.837 3 0.37506 0.50378 5.4211 3 Median 0.37506 0.50378 5.4211 3 0 Median NaN NaN NaN 0 0 Median 34413000 24595000 9817200 34413000 24595000 9817200 0 0 0 4903 716 5014 17398;17399;17400 26310;26311;26312;26313;26314 26312 4 HEQILVLDPPTDLK ______________________________ KHEQILVLDPPTDLKFKGPFTDVVTTNLKL K H E L K F 0 0 0 2 0 1 1 0 1 1 3 1 0 0 2 0 1 0 0 1 0 0 14 0 1616.8774 A8KA83;Q9P0L0;J3QKM9 A8KA83 4 17 VAPA Vesicle-associated membrane protein-associated protein A yes no 2;3 0.00094726 86.262 3 1 0.71522 0.91022 50.08 4 Median 0.64718 0.83243 10.756 3 0 Median 1.687 2.3571 NaN 1 0 Median 24749000 12707000 12042000 20391000 11268000 9123100 4357800 1438800 2919000 4904 653 5015 17401;17402;17403;17404 26315;26316;26317;26318 26316 4 HESAEIFVVCQGFLAPDK QLFRRVQATKPQASRHESAEIFVVCQGFLA AEIFVVCQGFLAPDKVDSKFFDPKFAFKEV R H E D K V 2 0 0 1 1 1 2 1 1 1 1 1 0 2 1 1 0 0 0 2 0 0 18 0 2045.9881 Q8IY81 Q8IY81 188 205 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 2;3 2.8734E-09 76.586 5 1 0.80505 0.98434 28.173 5 Median 0.80769 1.0071 5.3054 4 0 Median 0.38459 0.54005 NaN 1 0 Median 57349000 34419000 22930000 53211000 31447000 21763000 4138900 2971900 1167000 4905 1628 5016 17405;17406;17407;17408;17409;17410 26319;26320;26321;26322;26323;26324;26325 26324 7 HETEFAELEVK QLLTTSRQLTLGAYKHETEFAELEVKTREK GAYKHETEFAELEVKTREKLEAAKKKTSFE K H E V K T 1 0 0 0 0 0 4 0 1 0 1 1 0 1 0 0 1 0 0 1 0 0 11 0 1330.6405 O95619;F8W0J4 O95619 168 178 YEATS4 YEATS domain-containing protein 4 yes no 2 1.7828E-32 198.72 2 0.47799 0.59563 NaN 1 Median 0.47799 0.59563 NaN 1 0 Median NaN NaN NaN 0 0 Median 10794000 8220300 2573700 10794000 8220300 2573700 0 0 0 4906 1222 5017 17411;17412 26326;26327 26326 2 HEVNYQNVVHK ISTKCSMCQKNAVIRHEVNYQNVVHKLCSD AVIRHEVNYQNVVHKLCSDACFSKFRSANN R H E H K L 0 0 2 0 0 1 1 0 2 0 0 1 0 0 0 0 0 0 1 3 0 0 11 0 1365.6789 Q5VZL5;H7C1I7 Q5VZL5 455 465 ZMYM4 Zinc finger MYM-type protein 4 yes no 2;3 0.00074538 106.18 3 0.65623 0.83075 9.3383 2 Median 0.65623 0.83075 9.3383 2 0 Median NaN NaN NaN 0 0 Median 17716000 10435000 7280400 17716000 10435000 7280400 0 0 0 4907 1580 5018 17413;17414;17415 26328;26329;26330;26331 26331 4 HEVSPLPCHAVGPYSCK CPPCQVPIPMECLGKHEVSPLPCHAVGPYS VSPLPCHAVGPYSCKRVCGRILDCQNHTCM K H E C K R 1 0 0 0 2 0 1 1 2 0 1 1 0 0 3 2 0 0 1 2 0 0 17 0 1936.8924 B1Q2B0;Q6ZNB6 B1Q2B0 645 661 URCC5;NFXL1 NF-X1-type zinc finger protein NFXL1 yes no 3 2.8976E-05 63.062 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1683300 1683300 0 1683300 1683300 0 0 0 0 4908 679 5019 17416 26332 26332 1 HFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK NGTGSSPRGPGCSLRHFACEQNLLSRPDGS DTSVLAGVYGPAEVKVSKEIFNKATLEVIL R H F V K V 4 1 1 2 1 2 2 4 1 0 4 1 0 2 2 4 1 0 1 3 0 0 36 1 3819.8526 Q9NQT4;B2RC50;M0R102;M0R289 Q9NQT4 30 65 EXOSC5 Exosome complex component RRP46 yes no 4 2.9198E-07 63.881 4 0.6153 0.79106 12.53 4 Median 0.6153 0.79106 12.53 4 0 Median NaN NaN NaN 0 0 Median 23100000 13690000 9410600 23100000 13690000 9410600 0 0 0 4909 1753 5020 17417;17418;17419;17420 26333;26334;26335;26336;26337 26333 5 HFADGLETDGTLQK ESFRAKASSLSEELKHFADGLETDGTLQKC KHFADGLETDGTLQKCFEDSNGKASDFSLE K H F Q K C 1 0 0 2 0 1 1 2 1 0 2 1 0 1 0 0 2 0 0 0 0 0 14 0 1530.7314 Q4G1A1;A8K3X3;Q9H410;Q5JW53;Q5JW54;Q5JW57 Q4G1A1 161 174 DSN1 Kinetochore-associated protein DSN1 homolog yes no 2 1.0718E-09 119.03 3 1 0.44422 0.60611 NaN 1 Median NaN NaN NaN 0 0 Median 0.44422 0.60611 NaN 1 0 Median 5119600 3989600 1130000 1313200 1313200 0 3806400 2676400 1130000 4910 599 5021 17421;17422;17423;17424 26338;26339;26340;26341 26340 4 HFCNQQCLLR QGKLLETIHWRGQIRHFCNQQCLLRFYSQQ RGQIRHFCNQQCLLRFYSQQNQPNLDTQSG R H F L R F 0 1 1 0 2 2 0 0 1 0 2 0 0 1 0 0 0 0 0 0 0 0 10 0 1374.6285 A6NHN7;A6NHB5;Q14202 A6NHN7 743 752 ZMYM3 Zinc finger MYM-type protein 3 yes no 2 0.037648 40.268 1 0.40334 0.53315 NaN 1 Median 0.40334 0.53315 NaN 1 0 Median NaN NaN NaN 0 0 Median 9126500 5139400 3987100 9126500 5139400 3987100 0 0 0 4911 565 5022 17425 26342 26342 1 HFCPNVPIILVGNKK DSLENIPEKWTPEVKHFCPNVPIILVGNKK HFCPNVPIILVGNKKDLRNDEHTRRELAKM K H F K K D 0 0 2 0 1 0 0 1 1 2 1 2 0 1 2 0 0 0 0 2 0 0 15 1 1734.9603 B4DKN9;Q5JR08;A0A024R324;A0A024R0I3;P61586;P08134;Q5JR07;C9JNR4;E9PQH6;C9JX21;Q5JR05;Q9BVT0 B4DKN9 85 99 RHOC;RHOA;hCG_2043376;ARHA Transforming protein RhoA;Rho-related GTP-binding protein RhoC yes no 3 5.7129E-05 98.337 3 0.66816 0.82711 18.464 2 Median 0.66816 0.82711 18.464 2 0 Median NaN NaN NaN 0 0 Median 23541000 9227200 14314000 23541000 9227200 14314000 0 0 0 4912 38 5023 17426;17427;17428 26343;26344;26345;26346 26343 4 HFDGEDYTCITFQPDLSK TWMNNMMKTSEAKIKHFDGEDYTCITFQPD GEDYTCITFQPDLSKFKMEKLDKDIVALMT K H F S K F 0 0 0 3 1 1 1 1 1 1 1 1 0 2 1 1 2 0 1 0 0 0 18 0 2171.947 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 201 218 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 3 6.5015E-11 120.24 4 1 0.66915 0.84412 7.4963 5 Median 0.68223 0.85489 3.6431 4 0 Median 0.50247 0.72923 NaN 1 0 Median 78079000 45958000 32121000 71464000 42185000 29279000 6615000 3773100 2841900 4913 1437 5024 17429;17430;17431;17432;17433 26347;26348;26349;26350;26351;26352;26353;26354 26350 8 HFEATDILVSK KIEPIPGESPKMFGRHFEATDILVSKISRQ MFGRHFEATDILVSKISRQSIDALKDWFRD R H F S K I 1 0 0 1 0 0 1 0 1 1 1 1 0 1 0 1 1 0 0 1 0 0 11 0 1258.6558 Q8N5A0;A0A087WUT6;O60841;B3KM86;D3DVI5 Q8N5A0 1175 1185 EIF5B Eukaryotic translation initiation factor 5B yes no 2 0.010575 97.597 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5538200 1891700 3646400 1891700 1891700 0 3646400 0 3646400 4914 345 5025 17434;17435;17436 26355;26356;26357 26356 3 HFELGGDK PNCRSKRMLAIKRCKHFELGGDKKRKGQVI LAIKRCKHFELGGDKKRKGQVIQF______ K H F D K K 0 0 0 1 0 0 1 2 1 0 1 1 0 1 0 0 0 0 0 0 0 0 8 0 901.42938 J3KQN4;Q969Q0;P83881;B2R4V2;H0Y5B4;H7BZ11;R4GN19 J3KQN4 126 133 RPL36A;RPL36AL;RPL36A-HNRNPH2 60S ribosomal protein L36a-like;60S ribosomal protein L36a yes no 1;2 7.3356E-18 187.8 12 5 0.89388 1.1665 27.794 11 Median 0.93809 1.2082 5.8159 7 0 Median 0.46019 0.72312 5.0803 4 0 Median 6365400000 3408900000 2956400000 5953000000 3127400000 2825600000 412400000 281520000 130890000 4915 1136 5026 17437;17438;17439;17440;17441;17442;17443;17444;17445;17446;17447;17448;17449;17450;17451;17452;17453 26358;26359;26360;26361;26362;26363;26364;26365;26366;26367;26368;26369;26370;26371;26372;26373;26374;26375;26376;26377;26378;26379;26380;26381;26382;26383 26367 26 HFELGGDKK PNCRSKRMLAIKRCKHFELGGDKKRKGQVI AIKRCKHFELGGDKKRKGQVIQF_______ K H F K K R 0 0 0 1 0 0 1 2 1 0 1 2 0 1 0 0 0 0 0 0 0 0 9 1 1029.5243 J3KQN4;Q969Q0;P83881;B2R4V2;H0Y5B4;H7BZ11;R4GN19 J3KQN4 126 134 RPL36A;RPL36AL;RPL36A-HNRNPH2 60S ribosomal protein L36a-like;60S ribosomal protein L36a yes no 1;2;3 1.2174E-21 195.06 17 0.96136 1.1769 11.077 13 Median 0.96136 1.1769 11.077 13 0 Median NaN NaN NaN 0 0 Median 3912700000 1819600000 2093100000 3912700000 1819600000 2093100000 0 0 0 4916 1136 5027 17454;17455;17456;17457;17458;17459;17460;17461;17462;17463;17464;17465;17466;17467;17468;17469;17470 26384;26385;26386;26387;26388;26389;26390;26391;26392;26393;26394;26395;26396;26397;26398;26399;26400;26401;26402;26403;26404;26405;26406;26407 26395 23 HFFLYGEFPGDER PDLPVPELPDFFQGKHFFLYGEFPGDERRK GKHFFLYGEFPGDERRKLIRYVTAFNGELE K H F E R R 0 1 0 1 0 0 2 2 1 0 1 0 0 3 1 0 0 0 1 0 0 0 13 0 1612.731 A0A024R0S8;Q59HH7;P18887;F5H8D7;B2RCY5 A0A024R0S8 547 559 XRCC1 DNA repair protein XRCC1 yes no 3 0.046642 19.058 1 0.61396 0.8157 NaN 1 Median 0.61396 0.8157 NaN 1 0 Median NaN NaN NaN 0 0 Median 2615800 1217600 1398100 2615800 1217600 1398100 0 0 0 4917 42 5028 17471 26408 26408 1 HFIAEYDTSTQDFGEPF QNLHEIGERCVEELKHFIAEYDTSTQDFGE IAEYDTSTQDFGEPF_______________ K H F P F - 1 0 0 2 0 1 2 1 1 1 0 0 0 3 1 1 2 0 1 0 0 0 17 0 2002.8585 F8W0Q9 F8W0Q9 369 385 PPHLN1 yes yes 2 0.0021111 49.35 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3235400 0 0 3235400 0 0 0 0 0 4918 1066 5029 17472 26409 26409 1 HFILDECDK LALARNKSLNLKHIKHFILDECDKMLEQLD NLKHIKHFILDECDKMLEQLDMRRDVQEIF K H F D K M 0 0 0 2 1 0 1 0 1 1 1 1 0 1 0 0 0 0 0 0 0 0 9 0 1175.5281 A0A024RCM3;Q13838;Q5STU3;F6WLT2;A0A0G2JJZ9;F6S4E6;A0A0A0MT12;F6TRA5;Q59G92;A0A140T9X3;B4DP52;A0A140T996;A0A140T9L4;A0A140T973;A0A140T9K1;A0A140T9X9;B4DIJ6;F6UJC5;A0A140TA18;B4DIZ8 A0A024RCM3 192 200 hCG_2005638;DDX39B Spliceosome RNA helicase DDX39B yes no 2 0.013679 57.859 1 0.50092 0.6348 NaN 1 Median 0.50092 0.6348 NaN 1 0 Median NaN NaN NaN 0 0 Median 6118200 4161300 1956900 6118200 4161300 1956900 0 0 0 4919 296 5030 17473 26410 26410 1 HFKPEIR AIPLPGVRKGDMSSRHFKPEIRVTSLRFSP RKGDMSSRHFKPEIRVTSLRFSPTGRCWAA R H F I R V 0 1 0 0 0 0 1 0 1 1 0 1 0 1 1 0 0 0 0 0 0 0 7 1 925.51339 Q15269;A0A0B4J2E5;A0A0J9YX21 Q15269 698 704 PWP2 Periodic tryptophan protein 2 homolog yes no 3 0.0078946 81.297 3 0.84544 1.1038 0.13339 3 Plateau 0.84544 1.1038 0.13339 3 0 Plateau NaN NaN NaN 0 0 Median 70167000 38467000 31700000 70167000 38467000 31700000 0 0 0 4920 1508 5031 17474;17475;17476 26411;26412;26413;26414;26415 26414 5 HFLLEEDKPEEPTAHAFVSTLTR LVMNVYRDGAWGAFRHFLLEEDKPEEPTAH PEEPTAHAFVSTLTRGDLSSIRWVCSSLRH R H F T R G 2 1 0 1 0 0 4 0 2 0 3 1 0 2 2 1 3 0 0 1 0 0 23 1 2666.334 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1514 1536 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 4 0.01324 20.199 1 0.83919 1.0975 NaN 1 Median 0.83919 1.0975 NaN 1 0 Median NaN NaN NaN 0 0 Median 11781000 6870900 4909600 11781000 6870900 4909600 0 0 0 4921 486 5032 17477 26416 26416 1 HFLPASR GLSQKPISSFADFERHFLPASRNRTVGATR SSFADFERHFLPASRNRTVGATRLNQRSSR R H F S R N 1 1 0 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 0 0 0 0 7 0 826.44497 Q14807;A0A024R632;B7Z9T5;H3BRB3;H3BTH5 Q14807 224 230 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 0.03235 95.957 2 1 0.7604 1.036 20.524 3 Median 0.77389 1.0605 3.3077 2 0 Median 0.53511 0.74498 NaN 1 0 Median 27552000 16924000 10628000 18554000 11017000 7536200 8998500 5906500 3092000 4922 1497 5033 17478;17479;17480 26417;26418;26419 26417 3 HFNAPSHIR FNPFVTSDRSKNRKRHFNAPSHIRRKIMSS SKNRKRHFNAPSHIRRKIMSSPLSKELRQK R H F I R R 1 1 1 0 0 0 0 0 2 1 0 0 0 1 1 1 0 0 0 0 0 0 9 0 1077.5468 J3QRI7;J3QQQ9;J3QQV1;J3QRC4;Q6IBH6;P61254;J3KTJ8;A0A024RBF6;J3KSS0 J3QRI7 18 26 RPL26;hCG_26523 60S ribosomal protein L26 yes no 2;3 4.2791E-06 133.58 7 3 0.75662 1.0411 42.866 8 Median 0.81804 1.1169 15.142 6 0 Median 0.3576 0.46239 10.896 2 0 Median 456610000 253080000 203530000 448780000 247010000 201770000 7833100 6076000 1757100 4923 1142 5034 17481;17482;17483;17484;17485;17486;17487;17488;17489;17490 26420;26421;26422;26423;26424;26425;26426;26427;26428;26429 26422 9 HFNAPSHVR FNPFVTSDRSKNRKRHFNAPSHVRRKIMSS SKNRKRHFNAPSHVRRKIMSSPLSKELRQK R H F V R R 1 1 1 0 0 0 0 0 2 0 0 0 0 1 1 1 0 0 0 1 0 0 9 0 1063.5312 Q9UNX3;E5RIT6;E5RHH1 Q9UNX3 18 26 RPL26L1 60S ribosomal protein L26-like 1 yes no 3 3.2544E-12 140.83 3 0.94448 1.3453 12.956 3 Median 0.94448 1.3453 12.956 3 0 Median NaN NaN NaN 0 0 Median 26574000 13083000 13492000 26574000 13083000 13492000 0 0 0 4924 1797 5035 17491;17492;17493 26430;26431;26432;26433;26434 26434 5 HFNSLHIPK ANKDSLYKPILRQKKHFNSLHIPKALQKAL ILRQKKHFNSLHIPKALQKALPFKNKPKTQ K H F P K A 0 0 1 0 0 0 0 0 2 1 1 1 0 1 1 1 0 0 0 0 0 0 9 0 1091.5876 Q14692 Q14692 1160 1168 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 0.003688 57.859 1 1.0246 1.2712 NaN 1 Median 1.0246 1.2712 NaN 1 0 Median NaN NaN NaN 0 0 Median 18682000 9172700 9509600 18682000 9172700 9509600 0 0 0 4925 1495 5036 17494 26435;26436 26436 2 HFSISGCPLYHNLSADECK PGCNSLGHLTGKHERHFSISGCPLYHNLSA SGCPLYHNLSADECKVRAQSRDKQIEERML R H F C K V 1 0 1 1 2 0 1 1 2 1 2 1 0 1 1 3 0 0 1 0 0 0 19 0 2233.9885 O95251;E7EUP3;B7Z4D9;B3KVJ2 O95251 203 221 KAT7 Histone acetyltransferase KAT7;Histone acetyltransferase yes no 3 0.011657 23.895 1 0.98028 1.251 NaN 1 Median 0.98028 1.251 NaN 1 0 Median NaN NaN NaN 0 0 Median 14582000 7792300 6790200 14582000 7792300 6790200 0 0 0 4926 1217 5037 17495 26437 26437 1 HFSTEDGIFQGQR GETQMLVGCADRTVKHFSTEDGIFQGQRHC VKHFSTEDGIFQGQRHCPGGEGMFRGLAQA K H F Q R H 0 1 0 1 0 2 1 2 1 1 0 0 0 2 0 1 1 0 0 0 0 0 13 0 1520.7008 Q6RFH5;E9PS41;B4E018 Q6RFH5 69 81 WDR74 WD repeat-containing protein 74 yes no 2;3 2.6297E-17 172.61 5 0.60585 0.80511 7.8036 2 Median 0.60585 0.80511 7.8036 2 0 Median NaN NaN NaN 0 0 Median 44370000 20058000 24312000 44370000 20058000 24312000 0 0 0 4927 1598 5038 17496;17497;17498;17499;17500 26438;26439;26440;26441;26442 26438 4 HFSVEGQLEFR YKSLTNDWEDHLAVKHFSVEGQLEFRALLF LAVKHFSVEGQLEFRALLFIPRRAPFDLFE K H F F R A 0 1 0 0 0 1 2 1 1 0 1 0 0 2 0 1 0 0 0 1 0 0 11 0 1347.6571 A0A024RD80;P08238;B4DMA2;B4DGL0;Q6PK50;Q58FF7;Q58FG1;K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q96HX7;Q14568 A0A024RD80 320 330 HSP90AB1;HSP90AB3P;HSP90AA4P;EL52;HSP90AA1;HSP90AA2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-alpha A4;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 no no 2;3 1.1879E-30 215.87 8 3 0.4149 0.56716 118.2 6 Median 0.39332 0.5457 6.0336 4 0 Median 3.4426 5.3018 13.76 2 0 Median 216950000 120340000 96607000 173360000 110890000 62471000 43585000 9448700 34136000 4928 312;1155 5039 17501;17502;17503;17504;17505;17506;17507;17508;17509;17510;17511 26443;26444;26445;26446;26447;26448;26449;26450;26451;26452;26453;26454;26455;26456;26457;26458;26459 26456 17 HFTEDIQTR KVKIADLGNACWVHKHFTEDIQTRQYRSLE ACWVHKHFTEDIQTRQYRSLEVLIGSGYNT K H F T R Q 0 1 0 1 0 1 1 0 1 1 0 0 0 1 0 0 2 0 0 0 0 0 9 0 1145.5465 Q96SB4;A0A024RCU9;A8K8B2;H3BLV9;H7C2I2;H7C521;H7C5L6;A8MPP7;A8MPY5;E7ETV6;Q59GF4;Q9UPE1;A0A024R704;P78362 Q96SB4 507 515 SRPK1;SRPK3;SRPK2 SRSF protein kinase 1;SRSF protein kinase 3;SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal no no 2 9.9334E-05 127.56 4 0.92214 1.2513 13.435 2 Median 0.92214 1.2513 13.435 2 0 Median NaN NaN NaN 0 0 Median 37066000 11442000 25624000 37066000 11442000 25624000 0 0 0 4929 1699;166 5040 17512;17513;17514;17515 26460;26461;26462;26463;26464 26462 5 HFTEFVPLR SYSKYMRALDEYYDKHFTEFVPLRTKAKEI DEYYDKHFTEFVPLRTKAKEILQEEEDLAE K H F L R T 0 1 0 0 0 0 1 0 1 0 1 0 0 2 1 0 1 0 0 1 0 0 9 0 1144.6029 P38606;B7Z2V6 P38606 468 476 ATP6V1A V-type proton ATPase catalytic subunit A yes no 2 0.0094026 75.854 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5224500 5224500 0 5224500 5224500 0 0 0 0 4930 1329 5041 17516 26465 26465 1 HFTIDDFEIGRPLGK KVMENSSGTPNILTRHFTIDDFEIGRPLGK HFTIDDFEIGRPLGKGKFGNVYLAREKKSH R H F G K G 0 1 0 2 0 0 1 2 1 2 1 1 0 2 1 0 1 0 0 0 0 0 15 1 1743.8944 B2RC06;J3KT86;Q96GD4;J3KTD6;J3QLN8;J3QR41;J3KRF8;J3KRJ2 B2RC06 71 85 AURKB Aurora kinase B no no 3 2.1538E-23 137.93 4 2 0.89679 1.269 8.2903 6 Median 0.90973 1.2052 9.2681 4 0 Median 0.77979 1.3492 1.9391 2 0 Median 442230000 231820000 210410000 307800000 154920000 152880000 134430000 76899000 57531000 4931 731;1686 5042 17517;17518;17519;17520;17521;17522 26466;26467;26468;26469;26470;26471;26472;26473;26474;26475;26476;26477;26478;26479 26473 14 HFTILDAPGHK KTVEVGRAYFETEKKHFTILDAPGHKSFVP TEKKHFTILDAPGHKSFVPNMIGGASQADL K H F H K S 1 0 0 1 0 0 0 1 2 1 1 1 0 1 1 0 1 0 0 0 0 0 11 0 1234.6459 Q8IYD1;B4DQM6;H3BSV8;H3BR35;Q7KZX8;B2RCT6;A8K2W7;P15170 H3BR35 159 169 GSPT2;GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3B;Eukaryotic peptide chain release factor GTP-binding subunit ERF3A no no 3 0.0037092 78.513 3 0.39927 0.50643 6.5644 2 Median 0.39927 0.50643 6.5644 2 0 Median NaN NaN NaN 0 0 Median 18846000 13475000 5370200 18846000 13475000 5370200 0 0 0 4932 586;1629 5043 17523;17524;17525 26480;26481;26482 26482 3 HFVLDECDK LALVRNRSFSLKNVKHFVLDECDKMLEQLD SLKNVKHFVLDECDKMLEQLDMRRDVQEIF K H F D K M 0 0 0 2 1 0 1 0 1 0 1 1 0 1 0 0 0 0 0 1 0 0 9 0 1161.5125 O00148;B4DX78;K7EQN7;A0A024R7H0;K7EPJ3;A0A0D9SEM9 O00148 191 199 DDX39A;DDX39 ATP-dependent RNA helicase DDX39A yes no 2 0.0072685 80.165 2 0.32652 0.39456 NaN 1 Median 0.32652 0.39456 NaN 1 0 Median NaN NaN NaN 0 0 Median 27040000 20376000 6664100 27040000 20376000 6664100 0 0 0 4933 1164 5044 17526;17527 26483;26484 26483 1 HGATHVFASK NLNKIGKDEMLQMIRHGATHVFASKESEIT LQMIRHGATHVFASKESEITDEDIDGILER R H G S K E 2 0 0 0 0 0 0 1 2 0 0 1 0 1 0 1 1 0 0 1 0 0 10 0 1053.5356 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370;D7EZH4 O60264 656 665 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 2;3 1.5061E-28 185.81 2 2.0383 2.5005 2.7957 2 Median 2.0383 2.5005 2.7957 2 0 Median NaN NaN NaN 0 0 Median 38051000 12304000 25747000 38051000 12304000 25747000 0 0 0 4934 1189 5045 17528;17529 26485;26486;26487 26486 3 HGDEIITSTTSNYETQTFSSK EQSQLTATQTRTVNKHGDEIITSTTSNYET TSTTSNYETQTFSSKTEWRVRAISAANLHL K H G S K T 0 0 1 1 0 1 2 1 1 2 0 1 0 1 0 4 5 0 1 0 0 0 21 0 2345.0659 Q6P2Q9;B4DK16;Q53GM6 Q6P2Q9 2050 2070 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 2.5514E-26 148.01 4 2 0.69217 0.86782 41.166 6 Median 0.6289 0.79169 14.15 4 0 Median 1.1432 1.656 13.253 2 0 Median 67777000 39761000 28016000 55281000 34359000 20922000 12496000 5401600 7094500 4935 1592 5046 17530;17531;17532;17533;17534;17535 26488;26489;26490;26491;26492;26493;26494;26495 26489 8 HGDVITIIDR TQVNGSVIDEPVRLKHGDVITIIDRSFRYE PVRLKHGDVITIIDRSFRYENESLQNGRKS K H G D R S 0 1 0 2 0 0 0 1 1 3 0 0 0 0 0 0 1 0 0 1 0 0 10 0 1137.6142 P46013 P46013 84 93 MKI67 Antigen KI-67 yes yes 2 6.0514E-10 169.41 3 0.85827 1.1672 6.6767 3 Median 0.85827 1.1672 6.6767 3 0 Median NaN NaN NaN 0 0 Median 132110000 72205000 59904000 132110000 72205000 59904000 0 0 0 4936 1342 5047 17536;17537;17538 26496;26497;26498;26499 26496 4 HGEIDYEAIVK ARLDILKIHAGPITKHGEIDYEAIVKLSDG PITKHGEIDYEAIVKLSDGFNGADLRNVCT K H G V K L 1 0 0 1 0 0 2 1 1 2 0 1 0 0 0 0 0 0 1 1 0 0 11 0 1272.635 V9HW24;A0A087X2I1;P62333 V9HW24 323 333 HEL-S-73;PSMC6 26S protease regulatory subunit 10B yes no 2 0.0043976 101.38 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8148200 1541300 6606900 1541300 1541300 0 6606900 0 6606900 4937 379 5048 17539;17540;17541 26500;26501;26502 26502 3 HGEPEEDIVGLQAFQER AEKKDPQGLGLHFYKHGEPEEDIVGLQAFQ EPEEDIVGLQAFQERLNSYKCITDTLQELV K H G E R L 1 1 0 1 0 2 4 2 1 1 1 0 0 1 1 0 0 0 0 1 0 0 17 0 1952.9228 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 914 930 NUP155 Nuclear pore complex protein Nup155 yes no 2;3 0.00011143 94.569 3 0.49308 0.66236 NaN 1 Median 0.49308 0.66236 NaN 1 0 Median NaN NaN NaN 0 0 Median 16607000 11295000 5312000 16607000 11295000 5312000 0 0 0 4938 29 5049 17542;17543;17544 26503;26504;26505;26506 26506 4 HGFCGIPITDTGR SPKDRVRDVFEAKARHGFCGIPITDTGRMG ARHGFCGIPITDTGRMGSRLVGIISSRDID R H G G R M 0 1 0 1 1 0 0 3 1 2 0 0 0 1 1 0 2 0 0 0 0 0 13 0 1429.6772 P12268;H0Y4R1;B7Z1G4;Q6QE17;E7ETK5 P12268 137 149 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2;3 6.109E-20 181.87 6 1 0.3123 0.42168 115.27 7 Median 0.30867 0.41812 10.613 6 0 Median 5.9633 8.8757 NaN 1 0 Median 158620000 113900000 44720000 151050000 112840000 38206000 7571900 1058000 6513900 4939 1261 5050 17545;17546;17547;17548;17549;17550;17551 26507;26508;26509;26510;26511;26512;26513;26514;26515;26516;26517 26509 10 HGFLEEFITPIVK LLINFIHHNWPSLLKHGFLEEFITPIVKAS LKHGFLEEFITPIVKASKNKQELSFYSIPE K H G V K A 0 0 0 0 0 0 2 1 1 2 1 1 0 2 1 0 1 0 0 1 0 0 13 0 1528.829 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 560 572 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2;3 6.6827E-37 175.15 10 4 0.58274 0.79604 22.434 12 Median 0.62393 0.78295 25.096 8 0 Median 0.57631 0.87582 6.2275 4 0 Median 158610000 97595000 61017000 85556000 53499000 32058000 73055000 44096000 28959000 4940 1437 5051 17552;17553;17554;17555;17556;17557;17558;17559;17560;17561;17562;17563;17564;17565 26518;26519;26520;26521;26522;26523;26524;26525;26526;26527;26528;26529;26530;26531;26532;26533;26534;26535;26536;26537;26538;26539;26540;26541;26542;26543;26544;26545 26533 28 HGGEDYVFSLLTGYCEPPTGVSLR NGALPPDLSYIVRARHGGEDYVFSLLTGYC LLTGYCEPPTGVSLREGLYFNPYFPGQAIA R H G L R E 0 1 0 1 1 0 2 4 1 0 3 0 0 1 2 2 2 0 2 2 0 0 24 0 2653.2483 Q8TBT6;P08574 Q8TBT6 195 218 CYC1 Cytochrome c1, heme protein, mitochondrial yes no 3 1.4911E-28 131.41 3 0.61565 0.82076 10.338 3 Median 0.61565 0.82076 10.338 3 0 Median NaN NaN NaN 0 0 Median 28316000 18112000 10204000 28316000 18112000 10204000 0 0 0 4941 1244 5052 17566;17567;17568 26546;26547;26548;26549 26549 4 HGGGGGGFGGGGFGSR GGSRRSTSSFSCLSRHGGGGGGFGGGGFGS GGGGGGFGGGGFGSRSLVGLGGTKSISISV R H G S R S 0 1 0 0 0 0 0 11 1 0 0 0 0 2 0 1 0 0 0 0 0 0 16 0 1319.5755 CON__P35908;P35908 CON__P35908 46 61 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2;3 8.2364E-23 210.95 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53061000 53061000 0 45114000 45114000 0 7947300 7947300 0 + 4942 964 5053 17569;17570;17571 26550;26551;26552 26550 3 HGGGGGGGSGPSAGSGGGGFGGSAAVAAATASGGK ______________________________ GGSAAVAAATASGGKSGGGSCGGGGSYSAS K H G G K S 7 0 0 0 0 0 0 17 1 0 0 1 0 1 1 5 1 0 0 1 0 0 35 0 2629.1865 J3QQW9;Q15022;A8K1U9 J3QQW9 6 40 SUZ12 Polycomb protein SUZ12 yes no 3 1.0489E-80 180.62 4 2 0.90949 1.2336 9.3534 6 Median 1.05 1.2897 7.2917 4 0 Linear 0.89042 1.3525 3.4319 2 0 Median 127040000 60423000 66615000 84541000 37620000 46921000 42497000 22803000 19694000 4943 1143 5054 17572;17573;17574;17575;17576;17577 26553;26554;26555;26556;26557;26558;26559;26560;26561;26562;26563;26564;26565;26566;26567;26568;26569 26555 17 HGGSPQPLATTPLSQEPVNPPSEASPTR TGPEPPAPTPLLAERHGGSPQPLATTPLSQ SQEPVNPPSEASPTRDRSPPKSPEKLPQSS R H G T R D 2 1 1 0 0 2 2 2 1 0 2 0 0 0 7 4 3 0 0 1 0 0 28 0 2851.41 A0A140VK53;Q9UQ35;I3L182;Q9UQ39;I3L4D8 A0A140VK53 374 401 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 3 2.8211E-06 89.181 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1149300 1149300 0 1149300 1149300 0 0 0 0 4944 509 5055 17578;17579;17580 26570;26571;26572 26570 3 HGGVIHIYVDK WDTEIKDDVIEECNKHGGVIHIYVDKNSAQ ECNKHGGVIHIYVDKNSAQGNVYVKCPSIA K H G D K N 0 0 0 1 0 0 0 2 2 2 0 1 0 0 0 0 0 0 1 2 0 0 11 0 1236.6615 B4DRA0;B4DLM0;B3KWX7;Q68DD9;B4E1M7;Q14498;H0Y4X3;B7Z4L7;Q6N037;E1P5S2;Q7Z3L0;Q6MZY7 B4DRA0 429 439 DKFZp781C0423;RBM39;DKFZp686A11192;RNPC2;DKFZp781I1140;DKFZp686C17209 RNA-binding protein 39 yes no 3 0.0033589 57.348 3 0.43213 0.54806 8.4882 2 Median 0.43213 0.54806 8.4882 2 0 Median NaN NaN NaN 0 0 Median 18330000 14070000 4259600 18330000 14070000 4259600 0 0 0 4945 786 5056 17581;17582;17583 26573;26574;26575;26576 26575 4 HGHLCPIDTGLIEK ALPQHKLTCFSVYCKHGHLCPIDTGLIEKN KHGHLCPIDTGLIEKNIELFFSGSAKPIYD K H G E K N 0 0 0 1 1 0 1 2 2 2 2 1 0 0 1 0 1 0 0 0 0 0 14 0 1588.8032 A0A024R7E3;P26358;Q59FP7;I6L9H2 A0A024R7E3 478 491 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 no no 3 0.00218 35.487 1 0.44705 0.56423 NaN 1 Median 0.44705 0.56423 NaN 1 0 Median NaN NaN NaN 0 0 Median 11346000 7544000 3801800 11346000 7544000 3801800 0 0 0 4946 176;1129 5057 17584 26577;26578 26577 2 HGINCFINR AEKEKMKEKVERILKHGINCFINRQLIYNY VERILKHGINCFINRQLIYNYPEQLFGAAG K H G N R Q 0 1 2 0 1 0 0 1 1 2 0 0 0 1 0 0 0 0 0 0 0 0 9 0 1129.5451 V9HW96;P78371;F5GWF6;F8VQ14;B7Z4R3 V9HW96 285 293 HEL-S-100n;CCT2 T-complex protein 1 subunit beta yes no 2 0.025102 52.268 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8051600 8051600 0 8051600 8051600 0 0 0 0 4947 1426 5058 17585 26579 26579 1 HGLLVPNNTTDQELQHIR IAGCRIIGRMCVGNRHGLLVPNNTTDQELQ LVPNNTTDQELQHIRNSLPDTVQIRRVEER R H G I R N 0 1 2 1 0 2 1 1 2 1 3 0 0 0 1 0 2 0 0 1 0 0 18 0 2084.0763 P56537;B7ZBH1 P56537 68 85 EIF6 Eukaryotic translation initiation factor 6 yes no 3;4 1.3225E-76 231.41 8 4 0.79888 1.0944 10.251 12 Median 0.81509 1.1233 6.0425 8 0 Median 0.58909 0.95567 3.3135 4 0 Median 1234900000 703470000 531420000 957650000 525860000 431780000 277250000 177610000 99641000 4948 1382 5059 17586;17587;17588;17589;17590;17591;17592;17593;17594;17595;17596;17597 26580;26581;26582;26583;26584;26585;26586;26587;26588;26589;26590;26591;26592;26593;26594;26595;26596;26597;26598;26599;26600;26601 26591 22 HGLQLGAQSPGR TFSSRLILEKHVQVRHGLQLGAQSPGRGTT QVRHGLQLGAQSPGRGTTLARGSSARAQGP R H G G R G 1 1 0 0 0 2 0 3 1 0 2 0 0 0 1 1 0 0 0 0 0 0 12 0 1219.6422 Q8N1G0;A6PVV7 Q8N1G0 1049 1060 ZNF687 Zinc finger protein 687 yes no 2 0.0066026 48.44 1 1 0.88529 1.2348 27.898 2 Median 0.74645 1.0137 NaN 1 0 Median 1.05 1.504 NaN 1 0 Median 11527000 5564000 5962900 5344300 2678200 2666200 6182600 2885800 3296800 4949 1634 5060 17598;17599 26602;26603;26604 26602 3 HGLTYATIDGSVNPK QWTNMLKVVALHLKKHGLTYATIDGSVNPK HGLTYATIDGSVNPKQRMDLVEAFNHSRGP K H G P K Q 1 0 1 1 0 0 0 2 1 1 1 1 0 0 1 1 2 0 1 1 0 0 15 0 1571.7944 A0A024R0F1;Q9UNY4;X6RI15 A0A024R0F1 1032 1046 TTF2 Transcription termination factor 2 yes no 2 3.697E-41 213.63 1 1.1026 1.3618 NaN 1 Median 1.1026 1.3618 NaN 1 0 Median NaN NaN NaN 0 0 Median 1311200 668700 642530 1311200 668700 642530 0 0 0 4950 33 5061 17600 26605;26606 26605 2 HGLVPFAFVR FYKYGRIREIELKNRHGLVPFAFVRFEDPR ELKNRHGLVPFAFVRFEDPRDAEDAIYGRN R H G V R F 1 1 0 0 0 0 0 1 1 0 1 0 0 2 1 0 0 0 0 2 0 0 10 0 1141.6396 Q13242;A8K3M9;H0YIB4;S4R3G0;B4DFT9 Q13242 49 58 SRSF9 Serine/arginine-rich splicing factor 9 yes no 2 0.00823 107.59 2 1 0.86733 1.2401 52.186 2 Median 0.62912 0.85745 NaN 1 0 Median 1.1957 1.7936 NaN 1 0 Median 23325000 11560000 11765000 16185000 8306200 7879000 7140000 3253600 3886400 4951 1467 5062 17601;17602;17603 26607;26608;26609;26610 26608 4 HGRPGIGATHSSR GHYLGEFSITYKPVKHGRPGIGATHSSRFI VKHGRPGIGATHSSRFIPLK__________ K H G S R F 1 2 0 0 0 0 0 3 2 1 0 0 0 0 1 2 1 0 0 0 0 0 13 1 1331.6807 K7EM56;A0A0B4J2B4;S4R417;K7EQJ5;K7ELC2;P62841 K7EM56 95 107 RPS15 40S ribosomal protein S15 yes no 3;4 0.025215 53.947 2 0.79912 1.076 0.062623 2 Median 0.79912 1.076 0.062623 2 0 Median NaN NaN NaN 0 0 Median 10421000 5420300 5000800 10421000 5420300 5000800 0 0 0 4952 418 5063 17604;17605 26611;26612 26612 2 HGSLGFLPR ______________________________ KFSAPRHGSLGFLPRKRSSRHRGKVKSFPK R H G P R K 0 1 0 0 0 0 0 2 1 0 2 0 0 1 1 1 0 0 0 0 0 0 9 0 982.53485 P39023;Q96QL0;B3KS36;H7C422;H7C3M2;B4DN06;F8WCR1 P39023 11 19 RPL3 60S ribosomal protein L3 yes no 2;3 9.1344E-30 198.07 9 3 0.71304 1.0249 7.3567 8 Median 0.73595 1.0142 5.0361 6 0 Median 0.69203 1.1316 1.4816 2 0 Median 1013600000 548240000 465370000 808640000 428670000 379960000 204970000 119570000 85406000 4953 1330 5064 17606;17607;17608;17609;17610;17611;17612;17613;17614;17615;17616;17617 26613;26614;26615;26616;26617;26618;26619;26620;26621;26622;26623;26624;26625;26626;26627;26628;26629;26630;26631;26632;26633;26634;26635;26636;26637;26638;26639;26640;26641;26642;26643;26644 26630 32 HGSYEDAVHSGALND IDDLIKLHPESKDDKHGSYEDAVHSGALND HGSYEDAVHSGALND_______________ K H G N D - 2 0 1 2 0 0 1 2 2 0 1 0 0 0 0 2 0 0 1 1 0 0 15 0 1570.6648 F5H282;E7EQR6;P17987 F5H282 318 332 TCP1 T-complex protein 1 subunit alpha yes no 2 0.0002889 62.408 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2934600 0 0 2934600 0 0 0 0 0 4954 1011 5065 17618 26645 26645 1 HGVQELEIELQSQLSK GQEVQSSAKEVTQLRHGVQELEIELQSQLS GVQELEIELQSQLSKKAALEKSLEDTKNRY R H G S K K 0 0 0 0 0 3 3 1 1 1 3 1 0 0 0 2 0 0 0 1 0 0 16 0 1836.9581 CON__P35527;P35527;K7EQQ3 CON__P35527 375 390 KRT9 Keratin, type I cytoskeletal 9 yes no 2;3 1.1786E-42 207.08 7 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 683680000 683680000 0 550890000 550890000 0 132790000 132790000 0 + 4955 963 5066 17619;17620;17621;17622;17623;17624;17625;17626;17627 26646;26647;26648;26649;26650;26651;26652;26653;26654;26655 26649 10 HGVQELEIELQSQLSKK GQEVQSSAKEVTQLRHGVQELEIELQSQLS VQELEIELQSQLSKKAALEKSLEDTKNRYC R H G K K A 0 0 0 0 0 3 3 1 1 1 3 2 0 0 0 2 0 0 0 1 0 0 17 1 1965.0531 CON__P35527;P35527;K7EQQ3 CON__P35527 375 391 KRT9 Keratin, type I cytoskeletal 9 yes no 3 0.038733 49.924 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12922000 12922000 0 12922000 12922000 0 0 0 0 + 4956 963 5067 17628;17629;17630 26656;26657;26658 26657 3 HGVVPLATYMR KRRGTRYMFSRPFRKHGVVPLATYMRIYKK PFRKHGVVPLATYMRIYKKGDIVDIKGMGT K H G M R I 1 1 0 0 0 0 0 1 1 0 1 0 1 0 1 0 1 0 1 2 0 0 11 0 1242.6543 Q6IAX2;P46778;G3V1B3;M0R181;Q59GK9 Q6IAX2 22 32 RPL21 60S ribosomal protein L21 yes no 2 0.0085745 65.347 1 3 0.69801 0.96416 7.9658 3 Median 0.62823 0.86224 NaN 1 0 Median 0.70142 0.98487 3.0046 2 0 Median 43201000 32813000 10388000 6405000 3925100 2479900 36796000 28888000 7908200 4957 1345 5068;5069 17631;17632;17633;17634 26659;26660;26661;26662;26663 26662 5 HGVVSCSGVAR DFTASNGWLDRFRRRHGVVSCSGVARARAR FRRRHGVVSCSGVARARARNAAPRTPAAPA R H G A R A 1 1 0 0 1 0 0 2 1 0 0 0 0 0 0 2 0 0 0 3 0 0 11 0 1127.5506 P07199 P07199 130 140 CENPB Major centromere autoantigen B yes yes 2 2.6711E-07 148.69 3 2 0.72547 1.025 19.335 4 Median 0.69657 0.9471 29.133 2 0 Median 0.72547 1.025 14.499 2 0 Median 59045000 33793000 25252000 45007000 26138000 18869000 14038000 7654600 6383200 4958 1239 5070 17635;17636;17637;17638;17639 26664;26665;26666;26667;26668;26669;26670 26664 7 HGYAPSDLPVK KIYQVLDFRIRCGMKHGYAPSDLPVKAKRS CGMKHGYAPSDLPVKAKRSTYNYSLPITVK K H G V K A 1 0 0 1 0 0 0 1 1 0 1 1 0 0 2 1 0 0 1 1 0 0 11 0 1182.6033 Q5T7U1;Q9Y5Q8;Q5T7U0;B7Z1V3;Q9NXK9;H7BY84;H0Y5D2 Q5T7U1 260 270 GTF3C5 General transcription factor 3C polypeptide 5 yes no 2 0.0084261 84.213 1 0.45408 0.59809 NaN 1 Median 0.45408 0.59809 NaN 1 0 Median NaN NaN NaN 0 0 Median 2572500 1622200 950270 2572500 1622200 950270 0 0 0 4959 1572 5071 17640 26671;26672 26672 2 HGYIGEFEIIDDHR PCSKVIVRFLTVMMKHGYIGEFEIIDDHRA KHGYIGEFEIIDDHRAGKIVVNLTGRLNKC K H G H R A 0 1 0 2 0 0 2 2 2 3 0 0 0 1 0 0 0 0 1 0 0 0 14 0 1699.7954 B2R4W8;P62244;I3L3P7;A8K7H3;I3L246;H3BN98 B2R4W8 44 57 hCG_1994130;RPS15A 40S ribosomal protein S15a yes no 3 4.9172E-15 149.69 8 2 0.79904 1.0963 32.995 8 Median 0.80676 1.109 5.5056 6 0 Median 0.33988 0.55417 2.9461 2 0 Median 2041800000 1160300000 881510000 1883200000 1041100000 842170000 158600000 119250000 39342000 4960 688 5072 17641;17642;17643;17644;17645;17646;17647;17648;17649;17650 26673;26674;26675;26676;26677;26678;26679;26680;26681;26682;26683;26684;26685;26686;26687;26688;26689;26690;26691;26692;26693;26694;26695;26696 26689 24 HHAEYLTELLTTQR VVRPQDQTVVFVATKHHAEYLTELLTTQRV KHHAEYLTELLTTQRVSCAHIYSALDPTAR K H H Q R V 1 1 0 0 0 1 2 0 2 0 3 0 0 0 0 0 3 0 1 0 0 0 14 0 1710.8689 Q8TDD1 Q8TDD1 349 362 DDX54 ATP-dependent RNA helicase DDX54 yes yes 3 0.028248 22.991 2 0.93541 1.2559 20.027 2 Median 0.93541 1.2559 20.027 2 0 Median NaN NaN NaN 0 0 Median 15379000 7992100 7386400 15379000 7992100 7386400 0 0 0 4961 1658 5073 17651;17652 26697;26698 26698 2 HHCLELAK QYALFLESVTEFEQRHHCLELAKEADLDVA VTEFEQRHHCLELAKEADLDVATITKTVVE R H H A K E 1 0 0 0 1 0 1 0 2 0 2 1 0 0 0 0 0 0 0 0 0 0 8 0 1006.5018 P57740;B3KMK0 P57740 619 626 NUP107 Nuclear pore complex protein Nup107 yes no 3 0.0049519 89.55 2 0.42513 0.54002 NaN 1 Median 0.42513 0.54002 NaN 1 0 Median NaN NaN NaN 0 0 Median 7717100 6192700 1524500 7717100 6192700 1524500 0 0 0 4962 1384 5074 17653;17654 26699;26700 26699 2 HHEDNLLR EIISNAAEYENIPIRHHEDNLLRQLAQKVP YENIPIRHHEDNLLRQLAQKVPHKLNNPKF R H H L R Q 0 1 1 1 0 0 1 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 1032.5101 O75643;A4FU77;B4E150;B4E0P5;Q9UNV9;A2RRQ7;Q7L5W4;Q9P172 O75643 1862 1869 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 0.0013464 93.195 4 0.63043 0.84255 8.1205 4 Median 0.63043 0.84255 8.1205 4 0 Median NaN NaN NaN 0 0 Median 64972000 37848000 27124000 64972000 37848000 27124000 0 0 0 4963 1206 5075 17655;17656;17657;17658 26701;26702;26703;26704;26705;26706 26702 6 HHIETGGGQLPAK PIAVSGVRGMGFLMRHHIETGGGQLPAKLS MRHHIETGGGQLPAKLSSLFVKCLQNPSSD R H H A K L 1 0 0 0 0 1 1 3 2 1 1 1 0 0 1 0 1 0 0 0 0 0 13 0 1343.6946 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2538 2550 PRIC295;GCN1L1 Translational activator GCN1 yes no 3 0.033727 67.252 1 0.29656 0.3704 NaN 1 Median 0.29656 0.3704 NaN 1 0 Median NaN NaN NaN 0 0 Median 4175200 3200000 975270 4175200 3200000 975270 0 0 0 4964 1000 5076 17659 26707 26707 0 HHIPVVDR MARSFHRTQDLKTKKHHIPVVDRTPLEPPP QDLKTKKHHIPVVDRTPLEPPPIVVVVMGP K H H D R T 0 1 0 1 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 2 0 0 8 0 971.5301 Q14692 Q14692 68 75 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 0.0069542 49.418 2 0.90872 1.206 19.745 2 Median 0.90872 1.206 19.745 2 0 Median NaN NaN NaN 0 0 Median 19927000 10038000 9889400 19927000 10038000 9889400 0 0 0 4965 1495 5077 17660;17661 26708;26709;26710 26710 3 HHLELEK SKVLKNNIRFMNHMKHHLELEKQNNESWEN IRFMNHMKHHLELEKQNNESWENHTTCQHC K H H E K Q 0 0 0 0 0 0 2 0 2 0 2 1 0 0 0 0 0 0 0 0 0 0 7 0 904.47667 A8K124;B4DHL1;A0A024R5W1;Q6N043;H0YLA6;H0YL38;Q9H740;Q8ND82;Q9UJJ2 Q8ND82 337 343 SUHW4;ZNF280D;ZNF280C Zinc finger protein 280D;Zinc finger protein 280C no no 3 0.016035 71.715 1 0.83515 1.0834 NaN 1 Median 0.83515 1.0834 NaN 1 0 Median NaN NaN NaN 0 0 Median 7296600 3851500 3445100 7296600 3851500 3445100 0 0 0 4966 1652;151 5078 17662 26711 26711 1 HHLQPENPGPGGAAPSLEQNR SESSLQKRRRKKKKKHHLQPENPGPGGAAP NPGPGGAAPSLEQNRGREPEASGLKALKAR K H H N R G 2 1 2 0 0 2 2 3 2 0 2 0 0 0 4 1 0 0 0 0 0 0 21 0 2205.0675 Q14684 Q14684 407 427 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 3;4 2.0606E-08 103.45 6 0.76658 1.0181 25.069 5 Median 0.76658 1.0181 25.069 5 0 Median NaN NaN NaN 0 0 Median 81078000 45394000 35684000 81078000 45394000 35684000 0 0 0 4967 1493 5079 17663;17664;17665;17666;17667;17668 26712;26713;26714;26715;26716;26717;26718;26719;26720 26719 9 HHYEQQQEDLAR QEESVDPDYWEKLLRHHYEQQQEDLARNLG LLRHHYEQQQEDLARNLGKGKRIRKQVNYN R H H A R N 1 1 0 1 0 3 2 0 2 0 1 0 0 0 0 0 0 0 1 0 0 0 12 0 1552.7019 B3KY63;F5GWX5;A0A0C4DGG9;Q14839;Q8TDI0;K7EMY3;Q659F1;Q659D0;Q6ZU36;B3KRD4;Q12873;B4DLC6 B3KY63 1294 1305 CHD4;CHD5;DKFZp434K213;DKFZp434P202;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 no no 2;3 4.3577E-25 158.08 7 0.73552 1.0187 5.7747 7 Median 0.73552 1.0187 5.7747 7 0 Median NaN NaN NaN 0 0 Median 174110000 99830000 74282000 174110000 99830000 74282000 0 0 0 4968 428;1458 5080 17669;17670;17671;17672;17673;17674;17675 26721;26722;26723;26724;26725;26726;26727;26728;26729 26724 7 HIANYISGIQTIGHR YDLGKKKLLRKCENKHIANYISGIQTIGHR HIANYISGIQTIGHRVIVSDVQESFIWVRY K H I H R V 1 1 1 0 0 1 0 2 2 4 0 0 0 0 0 1 1 0 1 0 0 0 15 0 1678.8903 A8K6V3;Q15393;B3KQH1;B3KM77 A8K6V3 985 999 SF3B3 Splicing factor 3B subunit 3 yes no 3 6.818E-05 57.328 1 0.52476 0.69426 NaN 1 Median 0.52476 0.69426 NaN 1 0 Median NaN NaN NaN 0 0 Median 9586700 5831100 3755600 9586700 5831100 3755600 0 0 0 4969 628 5081 17676 26730 26730 1 HIDFSLR VVNIPSFIVRLDSQKHIDFSLRSPYGGGRP IVRLDSQKHIDFSLRSPYGGGRPGRVKRKN K H I L R S 0 1 0 1 0 0 0 0 1 1 1 0 0 1 0 1 0 0 0 0 0 0 7 0 886.4661 A0A024R4M0;P46781;A5D904 A0A024R4M0 156 162 RPS9 40S ribosomal protein S9 yes no 2 0.015925 101.69 3 2 0.63536 0.95669 18.136 4 Median 0.79144 1.0911 3.1389 2 0 Median 0.50008 0.80767 8.4905 2 0 Median 640320000 361050000 279270000 531450000 290180000 241270000 108870000 70871000 38003000 4970 124 5082 17677;17678;17679;17680;17681 26731;26732;26733;26734;26735 26732 5 HIEIFTDLSSR DVIQHETIGKKFEKRHIEIFTDLSSRFSKS FEKRHIEIFTDLSSRFSKSQLDIIIHSLKK R H I S R F 0 1 0 1 0 0 1 0 1 2 1 0 0 1 0 2 1 0 0 0 0 0 11 0 1316.6725 P13010;Q53TC2;C9JZ81 P13010 131 141 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 1.8748E-08 129.85 4 2 0.5349 0.7857 7.8634 6 Median 0.54213 0.74025 7.3426 4 0 Median 0.52912 0.8271 3.0232 2 0 Median 197930000 126620000 71308000 143220000 91728000 51492000 54709000 34894000 19816000 4971 1262 5083 17682;17683;17684;17685;17686;17687 26736;26737;26738;26739;26740;26741;26742;26743;26744 26744 9 HIEVEVR PSKQLLSTIMKDSEKHIEVEVRKFLALKQT TIMKDSEKHIEVEVRKFLALKQTPDFHTVI K H I V R K 0 1 0 0 0 0 2 0 1 1 0 0 0 0 0 0 0 0 0 2 0 0 7 0 880.47667 Q9H8H0;J3QR28 Q9H8H0 412 418 NOL11 Nucleolar protein 11 yes no 2 0.011596 104.45 1 2 0.67065 1.0173 10.567 3 Median 0.87635 1.1676 NaN 1 0 Median 0.64246 0.98238 4.9369 2 0 Median 62062000 35731000 26331000 24051000 12616000 11435000 38011000 23115000 14896000 4972 1743 5084 17688;17689;17690 26745;26746;26747;26748 26746 4 HIEVEVRK PSKQLLSTIMKDSEKHIEVEVRKFLALKQT IMKDSEKHIEVEVRKFLALKQTPDFHTVIG K H I R K F 0 1 0 0 0 0 2 0 1 1 0 1 0 0 0 0 0 0 0 2 0 0 8 1 1008.5716 Q9H8H0;J3QR28 Q9H8H0 412 419 NOL11 Nucleolar protein 11 yes no 3 0.035646 45.081 1 0.80317 1.059 NaN 1 Median 0.80317 1.059 NaN 1 0 Median NaN NaN NaN 0 0 Median 14905000 7883700 7021400 14905000 7883700 7021400 0 0 0 4973 1743 5085 17691 26749 26749 0 HIFLIR ELASKLDHYKAKATRHIFLIRHSQYHVDGS DHYKAKATRHIFLIRHSQYHVDGSLEKDRT R H I I R H 0 1 0 0 0 0 0 0 1 2 1 0 0 1 0 0 0 0 0 0 0 0 6 0 797.49119 Q96HS1 Q96HS1 99 104 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.023891 142.14 3 0.80592 1.0833 5.8148 3 Median 0.80592 1.0833 5.8148 3 0 Median NaN NaN NaN 0 0 Median 46599000 26532000 20067000 46599000 26532000 20067000 0 0 0 4974 1688 5086 17692;17693;17694 26750;26751;26752 26750 3 HIILVLSGK ______________________________ NLAGVRHIILVLSGKGGVGRSTISTELALA R H I G K G 0 0 0 0 0 0 0 1 1 2 2 1 0 0 0 1 0 0 0 1 0 0 9 0 978.6226 B2RDN3;H3BNF0;Q2YS46;H3BNS4;Q9Y5Y2;H3BRK5;H3BMW1 B2RDN3 15 23 NUBP2;NUBP1 Cytosolic Fe-S cluster assembly factor NUBP2 yes no 2 0.014363 68.224 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3158300 3158300 0 3158300 3158300 0 0 0 0 4975 737 5087 17695 26753 26753 1 HIIYVDNK ESKLKTALLDISCVKHIIYVDNKAINKAEY LDISCVKHIIYVDNKAINKAEYPEGFEIHS K H I N K A 0 0 1 1 0 0 0 0 1 2 0 1 0 0 0 0 0 0 1 1 0 0 8 0 1000.5342 B4DH39;Q8TAF6;O60488 B4DH39 163 170 FACL4;ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 2 0.045783 44.767 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1049900 0 1049900 0 0 0 1049900 0 1049900 4976 806 5088 17696 26754 26754 1 HIKEEPLSEEEPCTSTAIASPEK EETSVKKKKKRGKKKHIKEEPLSEEEPCTS EEEPCTSTAIASPEKKKKKKKKRENED___ K H I E K K 2 0 0 0 1 0 6 0 1 2 1 2 0 0 3 3 2 0 0 0 0 0 23 1 2581.2218 Q9Y2X3;B3KN82 Q9Y2X3 495 517 NOP58 Nucleolar protein 58 yes no 3 0.045961 12.682 1 0.49749 0.60064 NaN 1 Median 0.49749 0.60064 NaN 1 0 Median NaN NaN NaN 0 0 Median 4920100 2119800 2800300 4920100 2119800 2800300 0 0 0 4977 1810 5089 17697 26755 26755 1 HILGFDTGDAVLNEAAQILR KANQTKEGLPVALDKHILGFDTGDAVLNEA DTGDAVLNEAAQILRLLHIEELRELQTKIN K H I L R L 3 1 1 2 0 1 1 2 1 2 3 0 0 1 0 0 1 0 0 1 0 0 20 0 2152.1277 Q5RLJ0;Q549M8;Q9Y224 Q5RLJ0 186 205 C14orf166 UPF0568 protein C14orf166 yes no 3 1.5176E-06 120.9 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8033200 0 8033200 8033200 0 8033200 0 0 0 4978 1544 5090 17698 26756 26756 1 HILLAVANDEELNQLLK GNAARDNKKGRVTPRHILLAVANDEELNQL LLAVANDEELNQLLKGVTIASGGVLPNIHP R H I L K G 2 0 2 1 0 1 2 0 1 1 5 1 0 0 0 0 0 0 0 1 0 0 17 0 1932.068 O75367;D6RCF2 O75367 80 96 H2AFY Core histone macro-H2A.1;Histone H2A no no 2;3 9.4681E-136 271.04 24 13 0.83793 1.1423 31.185 28 Median 0.8574 1.1332 35.07 17 0 Median 0.75524 1.1931 24.974 11 0 Median 5517800000 3080500000 2437300000 3918600000 2176500000 1742100000 1599200000 903980000 695190000 4979 1198 5091 17699;17700;17701;17702;17703;17704;17705;17706;17707;17708;17709;17710;17711;17712;17713;17714;17715;17716;17717;17718;17719;17720;17721;17722;17723;17724;17725;17726;17727;17728;17729;17730;17731;17732;17733;17734;17735 26757;26758;26759;26760;26761;26762;26763;26764;26765;26766;26767;26768;26769;26770;26771;26772;26773;26774;26775;26776;26777;26778;26779;26780;26781;26782;26783;26784;26785;26786;26787;26788;26789;26790;26791;26792;26793;26794;26795;26796;26797;26798;26799;26800;26801;26802;26803;26804;26805;26806;26807;26808;26809;26810;26811;26812;26813;26814;26815;26816;26817;26818;26819;26820;26821;26822 26786 60 HIMGQNVADYMR YDSESKEFNAEVHRKHIMGQNVADYMRYLM HRKHIMGQNVADYMRYLMEEDEDAYKKQFS K H I M R Y 1 1 1 1 0 1 0 1 1 1 0 0 2 0 0 0 0 0 1 1 0 0 12 0 1433.6544 A2RUM7;P46777;B3KTM6;Q59GX9 A2RUM7 198 209 RPL5 60S ribosomal protein L5 yes no 2 0.00028466 73.9 2 0.44005 0.71308 NaN 1 Median NaN NaN NaN 0 0 Median 0.44005 0.71308 NaN 1 0 Median 41680000 28446000 13234000 0 0 0 41680000 28446000 13234000 4980 540 5092 17736;17737 26823;26824 26824 184;185 2 HINPVAASLIQK ETYLRIKKNEYSIPKHINPVAASLIQKMLQ IPKHINPVAASLIQKMLQTDPTARPTINEL K H I Q K M 2 0 1 0 0 1 0 0 1 2 1 1 0 0 1 1 0 0 0 1 0 0 12 0 1289.7456 B2R841;P53350;B4E083;Q59GD0;D3DWF3;I3L2H5;I3L309 B2R841 273 284 PLK1 Serine/threonine-protein kinase PLK;Serine/threonine-protein kinase PLK1 yes no 2 7.3743E-05 146.71 2 0.8551 1.1007 0.39945 2 Median 0.8551 1.1007 0.39945 2 0 Median NaN NaN NaN 0 0 Median 12335000 6660100 5675000 12335000 6660100 5675000 0 0 0 4981 714 5093 17738;17739 26825;26826;26827;26828 26825 4 HITSEADSDPGNPVELCK TESSQTSISLESDLKHITSEADSDPGNPVE SEADSDPGNPVELCKTQKQSTTTLNKKDLP K H I C K T 1 0 1 2 1 0 2 1 1 1 1 1 0 0 2 2 1 0 0 1 0 0 18 0 1967.8895 Q562F6;B7Z7S9 Q562F6 1025 1042 SGOL2 Shugoshin-like 2 yes no 2;3 1.699E-06 103.76 3 0.86863 1.108 NaN 1 Median 0.86863 1.108 NaN 1 0 Median NaN NaN NaN 0 0 Median 13592000 7090000 6502400 13592000 7090000 6502400 0 0 0 4982 1546 5094 17740;17741;17742 26829;26830;26831;26832;26833 26831 5 HIVSNDSSDSDDESHEPK RGSTMEEELENITTKHIVSNDSSDSDDESH SNDSSDSDDESHEPKGTENEDAGSDYQSDN K H I P K G 0 0 1 4 0 0 2 0 2 1 0 1 0 0 1 5 0 0 0 1 0 0 18 0 1996.8246 A8K2S1;P47712;B4DZI4 A8K2S1 428 445 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase yes no 3 0.0011753 65.225 1 0.61568 0.74607 NaN 1 Median 0.61568 0.74607 NaN 1 0 Median NaN NaN NaN 0 0 Median 688230 437980 250250 688230 437980 250250 0 0 0 4983 584 5095 17743 26834 26834 1 HIYYITGETK VSLKDYCTRMKENQKHIYYITGETKDQVAN KENQKHIYYITGETKDQVANSAFVERLRKH K H I T K D 0 0 0 0 0 0 1 1 1 2 0 1 0 0 0 0 2 0 2 0 0 0 10 0 1223.6186 K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q96HX7 K9JA46 490 499 EL52;HSP90AA1 Heat shock protein HSP 90-alpha no no 2 1.2988E-06 141.48 3 0.37335 0.47479 3.9833 2 Median 0.37335 0.47479 3.9833 2 0 Median NaN NaN NaN 0 0 Median 18956000 13888000 5067800 18956000 13888000 5067800 0 0 0 4984 1155 5096 17744;17745;17746 26835;26836;26837;26838 26835 4 HLAAVEER TAAAAALASAATKAKHLAAVEERKIKSLVA SAATKAKHLAAVEERKIKSLVALLVETQMK K H L E R K 2 1 0 0 0 0 2 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 8 0 923.48248 Q58EY4;Q92922;B4DYQ1;B4DYF9;Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;B4DF22 Q58EY4 883 890 SMARCC1;SMARCC2 SWI/SNF complex subunit SMARCC1;SWI/SNF complex subunit SMARCC2 no no 2 0.0089486 76.774 1 0.97781 1.4329 NaN 1 Median NaN NaN NaN 0 0 Median 0.97781 1.4329 NaN 1 0 Median 13371000 6475700 6895200 0 0 0 13371000 6475700 6895200 4985 1549;257 5097 17747 26839 26839 1 HLAFGGR RQFGPYRLNYSRTGRHLAFGGRRGHVAALD LNYSRTGRHLAFGGRRGHVAALDWVTKKLM R H L G R R 1 1 0 0 0 0 0 2 1 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 756.40311 B0UZZ8;B4DNI0;O15213;B4DP15;A8K9A1;A8K806;A0A140T9L0;A0A0G2JJL1;H0Y6G3 B0UZZ8 209 215 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2 0.010101 109.88 2 2 0.81323 1.1478 10.308 4 Median 0.93573 1.2609 12.264 2 0 Median 0.74631 1.1124 3.4011 2 0 Median 72384000 39908000 32476000 38861000 20019000 18842000 33524000 19889000 13634000 4986 668 5098 17748;17749;17750;17751 26840;26841;26842;26843 26841 4 HLALNLQEK RLKYSQSDLEQTKTRHLALNLQEKSKLESE EQTKTRHLALNLQEKSKLESELANFGPRIN R H L E K S 1 0 1 0 0 1 1 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1064.5978 Q14683;G8JLG1;Q6P2R1;Q6MZR8 Q14683 726 734 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0002707 93.429 2 0.54441 0.68847 NaN 1 Median 0.54441 0.68847 NaN 1 0 Median NaN NaN NaN 0 0 Median 25048000 20232000 4816300 25048000 20232000 4816300 0 0 0 4987 1492 5099 17752;17753 26844;26845;26846 26844 3 HLASDAIINENYDYLK FKAEHWNRCHKLIIRHLASDAIINENYDYL LASDAIINENYDYLKGFLEDLAPPERSSLI R H L L K G 2 0 2 2 0 0 1 0 1 2 2 1 0 0 0 1 0 0 2 0 0 0 16 0 1877.9159 P52948;H7C3P6 P52948 1653 1668 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.00031835 104.17 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 4988 1367 5100 17754 26847 26847 1 HLCEPGADGAETFADGVPR KSEKEFKAYVSLFMRHLCEPGADGAETFAD PGADGAETFADGVPREGLSRQHVLTRIGVM R H L P R E 3 1 0 2 1 0 2 3 1 0 1 0 0 1 2 0 1 0 0 1 0 0 19 0 1997.8901 B3KY63;F5GWX5;A0A0C4DGG9;Q14839;Q8TDI0;K7EMY3;Q659F1;Q659D0;Q6ZU36 B3KY63 1440 1458 CHD4;CHD5;DKFZp434K213;DKFZp434P202 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5 yes no 2;3 2.1872E-19 158.31 8 3 0.76044 1.0543 16.49 11 Median 0.75241 1.0295 9.4026 8 0 Median 0.8556 1.2857 11.786 3 0 Median 234450000 133950000 100500000 197000000 114960000 82032000 37459000 18987000 18472000 4989 428 5101 17755;17756;17757;17758;17759;17760;17761;17762;17763;17764;17765 26848;26849;26850;26851;26852;26853;26854;26855;26856;26857;26858;26859;26860;26861;26862;26863;26864;26865;26866;26867;26868;26869;26870 26851 23 HLCEPGADGSETFADGVPR KTEKEFKAYVSLFMRHLCEPGADGSETFAD PGADGSETFADGVPREGLSRQQVLTRIGVM R H L P R E 2 1 0 2 1 0 2 3 1 0 1 0 0 1 2 1 1 0 0 1 0 0 19 0 2013.8851 Q12873;B4DLC6;B4DKV1;Q2TAZ1;B3KWV4 Q12873 1462 1480 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 3 0.00031895 75.743 2 0.90472 1.2512 NaN 1 Median 0.90472 1.2512 NaN 1 0 Median NaN NaN NaN 0 0 Median 2964100 1406100 1558000 2964100 1406100 1558000 0 0 0 4990 1458 5102 17766;17767 26871;26872 26871 2 HLCFQLVSPTGTAVSTLSYISR AEVPHIRESVMRQGRHLCFQLVSPTGTAVS SPTGTAVSTLSYISRTNQLAVGFSDGYLAL R H L S R T 1 1 0 0 1 1 0 1 1 1 3 0 0 1 1 4 3 0 1 2 0 0 22 0 2436.2471 Q8WYP5;Q96M44 Q8WYP5 210 231 AHCTF1 Protein ELYS yes no 3 4.5749E-17 115.85 3 0.80308 1.0758 4.6581 3 Plateau 0.80308 1.0758 4.6581 3 0 Plateau NaN NaN NaN 0 0 Median 49135000 28418000 20717000 49135000 28418000 20717000 0 0 0 4991 1670 5103 17768;17769;17770 26873;26874;26875;26876;26877;26878 26877 6 HLCQQLQAEQAAAEK HTSTQALVSELLPAKHLCQQLQAEQAAAEK HLCQQLQAEQAAAEKRHREELEQSKQAAGG K H L E K R 4 0 0 0 1 4 2 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 15 0 1723.8312 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1365 1379 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 1.3889E-61 240.18 4 0.72206 0.91126 20.892 4 Median 0.72206 0.91126 20.892 4 0 Median NaN NaN NaN 0 0 Median 46098000 27161000 18937000 46098000 27161000 18937000 0 0 0 4992 148;1499 5104 17771;17772;17773;17774 26879;26880;26881;26882;26883;26884;26885;26886;26887 26882 9 HLDDINFDVR KYITDVVKLNAFDQRHLDDINFDVRFETFQ AFDQRHLDDINFDVRFETFQTITSYIKEMQ R H L V R F 0 1 1 3 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 10 0 1242.5993 O75691 O75691 1440 1449 UTP20 Small subunit processome component 20 homolog yes yes 2 7.9664E-05 105.4 3 1.0427 1.4123 9.0612 3 Median 1.0427 1.4123 9.0612 3 0 Median NaN NaN NaN 0 0 Median 22543000 9140200 13403000 22543000 9140200 13403000 0 0 0 4993 1207 5105 17775;17776;17777 26888;26889;26890 26890 3 HLDGEEDGSSDQSQASGTTGGR DTRPKVKAKKARKVKHLDGEEDGSSDQSQA GSSDQSQASGTTGGRRVSKARRRAAKLQSS K H L G R R 1 1 0 3 0 2 2 5 1 0 1 0 0 0 0 4 2 0 0 0 0 0 22 0 2189.9057 Q5H907;Q5H909;A0A024R9Y7;Q9UNF1 Q5H907 144 165 MAGED2 Melanoma-associated antigen D2 yes no 3 0.00064289 30.431 1 2.8981 3.5168 NaN 1 Median NaN NaN NaN 0 0 Median 2.8981 3.5168 NaN 1 0 Median 775150 192590 582570 0 0 0 775150 192590 582570 4994 234 5106 17778 26891 26891 1 HLDGEEDGSSDQSQASGTTGGRR DTRPKVKAKKARKVKHLDGEEDGSSDQSQA SSDQSQASGTTGGRRVSKARRRAAKLQSSQ K H L R R V 1 2 0 3 0 2 2 5 1 0 1 0 0 0 0 4 2 0 0 0 0 0 23 1 2346.0068 Q5H907;Q5H909;A0A024R9Y7;Q9UNF1 Q5H907 144 166 MAGED2 Melanoma-associated antigen D2 yes no 3 0.028986 43.81 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 206430 206430 0 206430 206430 0 0 0 0 4995 234 5107 17779 26892 26892 1 HLDPSLANYLVQK ERELLRRHHRSKTPRHLDPSLANYLVQKAK PRHLDPSLANYLVQKAKQRRALRRWEQELN R H L Q K A 1 0 1 1 0 1 0 0 1 0 3 1 0 0 1 1 0 0 1 1 0 0 13 0 1496.7987 O43463 O43463 109 121 SUV39H1 Histone-lysine N-methyltransferase SUV39H1 yes yes 2;3 3.7417E-12 154.15 6 2 0.80029 1.0265 5.1734 6 Median 0.82831 1.0319 5.4844 4 0 Median 0.65791 1.0037 4.2479 2 0 Median 130890000 79220000 51675000 90451000 54786000 35665000 40444000 24434000 16010000 4996 1185 5108 17780;17781;17782;17783;17784;17785;17786;17787 26893;26894;26895;26896;26897;26898;26899;26900;26901;26902;26903;26904 26893 12 HLDQIIPR LLARMKIDPEAFITRHLDQIIPRMTTQSPL PEAFITRHLDQIIPRMTTQSPLNQSSMNAM R H L P R M 0 1 0 1 0 1 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 0 8 0 990.56106 E1NZA1;Q92616;B4DM32 E1NZA1 705 712 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.0067634 82.241 2 0.41491 0.57933 11.903 2 Median 0.41491 0.57933 11.903 2 0 Median NaN NaN NaN 0 0 Median 8539300 5589400 2949900 8539300 5589400 2949900 0 0 0 4997 1000 5109 17788;17789 26905;26906 26906 2 HLDRPVFLR QKWDVTVLELSYHKRHLDRPVFLRFWETLD LSYHKRHLDRPVFLRFWETLDRYMVKHKSH R H L L R F 0 2 0 1 0 0 0 0 1 0 2 0 0 1 1 0 0 0 0 1 0 0 9 1 1151.6564 Q6P1J9;A0A1B0GUB2;A0A0S2Z5M9;A0A0S2Z5N1 Q6P1J9 505 513 CDC73 Parafibromin yes no 3 0.014035 56.258 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4096600 4096600 0 4096600 4096600 0 0 0 0 4998 1590 5110 17790 26907 26907 1 HLEAILTK TGEETEGMDGQIYKRHLEAILTKISLKNNL DGQIYKRHLEAILTKISLKNNLDHLLASLL R H L T K I 1 0 0 0 0 0 1 0 1 1 2 1 0 0 0 0 1 0 0 0 0 0 8 0 923.54402 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 378 385 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.00015312 125.25 3 2 0.78689 0.9653 12.568 5 Median 0.79106 1.0119 3.3511 3 0 Median 0.57879 0.80634 6.5603 2 0 Median 90235000 48500000 41735000 80878000 42941000 37937000 9357300 5558900 3798400 4999 748 5111 17791;17792;17793;17794;17795 26908;26909;26910;26911;26912;26913;26914;26915 26910 8 HLEINPDHPIVETLR ALRDNSTMGYMMAKKHLEINPDHPIVETLR HLEINPDHPIVETLRQKAEADKNDKAVKDL K H L L R Q 0 1 1 1 0 0 2 0 2 2 2 0 0 0 2 0 1 0 0 1 0 0 15 0 1781.9424 A0A024RD80;P08238;B4DMA2;B4DGL0;Q9H6X9;A8K3W9 A0A024RD80 625 639 HSP90AB1 Heat shock protein HSP 90-beta no no 3;4 2.3912E-19 156.6 7 3 0.48376 0.66379 117.85 8 Median 0.45549 0.63131 8.9668 6 0 Median 4.8653 7.9269 4.6941 2 0 Median 524300000 279410000 244890000 370700000 254810000 115890000 153600000 24606000 129000000 5000 312;598 5112 17796;17797;17798;17799;17800;17801;17802;17803;17804;17805 26916;26917;26918;26919;26920;26921;26922;26923;26924;26925;26926;26927;26928;26929;26930;26931;26932;26933;26934 26929 19 HLEINPDHSIIETLR ALRDNSTMGYMAAKKHLEINPDHSIIETLR HLEINPDHSIIETLRQKAEADKNDKSVKDL K H L L R Q 0 1 1 1 0 0 2 0 2 3 2 0 0 0 1 1 1 0 0 0 0 0 15 0 1785.9373 K9JA46;P07900;Q8TBA7;O75322;Q96HX7 K9JA46 633 647 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 3 4.6586E-05 88.78 3 1 0.41773 0.55699 125.27 4 Median 0.38994 0.52201 24.722 3 0 Median 4.065 5.7534 NaN 1 0 Median 46063000 27388000 18676000 38890000 26417000 12473000 7173800 970950 6202800 5001 1155 5113 17806;17807;17808;17809 26935;26936;26937;26938;26939;26940 26937 6 HLELYDR MKQRDDILINRPAKKHLELYDRDLKHFRIS LINRPAKKHLELYDRDLKHFRISKALDRVL K H L D R D 0 1 0 1 0 0 1 0 1 0 2 0 0 0 0 0 0 0 1 0 0 0 7 0 944.47158 Q8TED0;H0Y8P4 Q8TED0 360 366 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 0.011596 104.45 3 1 1.0367 1.3838 8.5615 3 Median 1.0367 1.3838 8.5615 3 0 Median NaN NaN NaN 0 0 Median 61314000 33323000 27991000 59208000 31217000 27991000 2105900 2105900 0 5002 1660 5114 17810;17811;17812;17813 26941;26942;26943;26944 26942 4 HLELYDRDLK MKQRDDILINRPAKKHLELYDRDLKHFRIS RPAKKHLELYDRDLKHFRISKALDRVLDPT K H L L K H 0 1 0 2 0 0 1 0 1 0 3 1 0 0 0 0 0 0 1 0 0 0 10 1 1300.6776 Q8TED0;H0Y8P4 Q8TED0 360 369 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 3 0.0034458 53.751 1 0.68526 0.87494 NaN 1 Median 0.68526 0.87494 NaN 1 0 Median NaN NaN NaN 0 0 Median 9177400 4611700 4565600 9177400 4611700 4565600 0 0 0 5003 1660 5115 17814 26945 26945 1 HLFGLR YKTMFMSGKEIKKKKHLFGLRIRVPPVPPN SGKEIKKKKHLFGLRIRVPPVPPNVAFKAE K H L L R I 0 1 0 0 0 0 0 1 1 0 2 0 0 1 0 0 0 0 0 0 0 0 6 0 741.42859 B4DZG1;Q9Y483;B4DZ69 B4DZG1 240 245 MTF2 Metal-response element-binding transcription factor 2 yes no 2 0.044875 74.849 1 0.84069 1.1072 NaN 1 Median 0.84069 1.1072 NaN 1 0 Median NaN NaN NaN 0 0 Median 8626600 4491600 4135000 8626600 4491600 4135000 0 0 0 5004 878 5116 17815 26946 26946 1 HLFGQPNSAYDFK VSKMLKDYDWINAERHLFGQPNSAYDFKTN ERHLFGQPNSAYDFKTNNPKEAGQRLQKLQ R H L F K T 1 0 1 1 0 1 0 1 1 0 1 1 0 2 1 1 0 0 1 0 0 0 13 0 1522.7205 A0A024R158;O95347;B7ZLZ7;B3KMB1;B3KM27;A0A0C4DGE5 A0A024R158 946 958 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2;3 1.4451E-29 165.63 8 4 0.68628 0.89574 8.7265 12 Median 0.6951 0.88785 9.2869 8 0 Median 0.60246 0.92261 8.6815 4 0 Median 476840000 278190000 198650000 374590000 214930000 159660000 102250000 63256000 38989000 5005 50 5117 17816;17817;17818;17819;17820;17821;17822;17823;17824;17825;17826;17827 26947;26948;26949;26950;26951;26952;26953;26954;26955;26956;26957;26958;26959;26960;26961;26962;26963;26964;26965;26966;26967;26968;26969;26970;26971 26961 25 HLFLLLK FPLPSIETKAEQLTKHLFLLLKDYAKLGAA TKAEQLTKHLFLLLKDYAKLGAARGQNFHL K H L L K D 0 0 0 0 0 0 0 0 1 0 4 1 0 1 0 0 0 0 0 0 0 0 7 0 882.56911 O75691 O75691 2158 2164 UTP20 Small subunit processome component 20 homolog yes yes 2 0.0082422 85.306 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3878600 0 3878600 3878600 0 3878600 0 0 0 5006 1207 5118 17828;17829 26972;26973 26972 2 HLGLLEK RQREHRERSQPGFRKHLGLLEKKKDYKLRA RSQPGFRKHLGLLEKKKDYKLRADDYRKKQ K H L E K K 0 0 0 0 0 0 1 1 1 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 808.48069 Q9Y3A2 Q9Y3A2 27 33 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 2 0.013012 100.07 1 1 0.71153 0.94805 35.836 2 Median 0.98163 1.2215 NaN 1 0 Median 0.51575 0.73584 NaN 1 0 Median 52831000 25121000 27710000 46553000 21125000 25428000 6277700 3995700 2282000 5007 1814 5119 17830;17831 26974;26975 26974 2 HLGYKPEEYK TWAGRPQDGVAVLVRHLGYKPEEYKMGRTK AVLVRHLGYKPEEYKMGRTKIFIRFPKTLF R H L Y K M 0 0 0 0 0 0 2 1 1 0 1 2 0 0 1 0 0 0 2 0 0 0 10 1 1262.6295 F5H6E2;B7Z3E5;O00159;D3DTH7;B7Z9C0 F5H6E2 676 685 MYO1C Unconventional myosin-Ic yes no 3 0.00016773 95.775 4 0.75589 0.93951 7.428 3 Plateau 0.75589 0.93951 7.428 3 0 Plateau NaN NaN NaN 0 0 Median 48135000 31990000 16145000 48135000 31990000 16145000 0 0 0 5008 905 5120 17832;17833;17834;17835 26976;26977;26978;26979;26980;26981 26979 6 HLHPIQTSFQEATASK YKEVVVSVPQRIMARHLHPIQTSFQEATAS LHPIQTSFQEATASKVIVAVGDRSSNLRGE R H L S K V 2 0 0 0 0 2 1 0 2 1 1 1 0 1 1 2 2 0 0 0 0 0 16 0 1793.906 Q8TEM1 Q8TEM1 1561 1576 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 3 0.0019407 34.395 1 0.64771 0.82728 NaN 1 Median 0.64771 0.82728 NaN 1 0 Median NaN NaN NaN 0 0 Median 6159600 3670400 2489200 6159600 3670400 2489200 0 0 0 5009 1661 5121 17836 26982 26982 1 HLIFVLNK SPHIETYLKKEKPWKHLIFVLNKCDLVPTW KKEKPWKHLIFVLNKCDLVPTWATKRWVAV K H L N K C 0 0 1 0 0 0 0 0 1 1 2 1 0 1 0 0 0 0 0 1 0 0 8 0 982.59639 Q5T0F3;Q13823;B4DPI9;H0YG10 Q5T0F3 249 256 GNL2 Nucleolar GTP-binding protein 2 yes no 2 0.00045197 170.43 2 1 0.8692 1.0683 51.101 3 Median 0.90326 1.1419 9.4202 2 0 Median 0.34732 0.47481 NaN 1 0 Median 31924000 16928000 14995000 28090000 14251000 13838000 3834000 2677100 1156900 5010 1477 5122 17837;17838;17839 26983;26984;26985;26986 26983 4 HLIPAANTGESK ELKLICCDILDVLDKHLIPAANTGESKVFY LDKHLIPAANTGESKVFYYKMKGDYHRYLA K H L S K V 2 0 1 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 12 0 1236.6463 V9HW98;G9K389;G9K388;P62258;B7ZA86 V9HW98 107 118 HEL2;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion;YWHAE 14-3-3 protein epsilon yes no 2 5.5813E-09 152.69 2 2 0.75253 0.97288 51.168 4 Median 0.48511 0.61339 11.85 2 0 Median 1.1143 1.4739 5.3655 2 0 Median 22438000 12969000 9469500 17050000 10443000 6607500 5387800 2525700 2862000 5011 1085 5123 17840;17841;17842;17843 26987;26988;26989;26990;26991;26992 26988 6 HLITTQTEHK IAIKGVARFYRSRKKHLITTQTEHKCVLDS RSRKKHLITTQTEHKCVLDSCRSLEAEGFQ K H L H K C 0 0 0 0 0 1 1 0 2 1 1 1 0 0 0 0 3 0 0 0 0 0 10 0 1206.6357 Q5QP19;Q53FP3;B2R5S3;Q9Y697;F2Z2E7;A2A2M1 Q5QP19 88 97 NFS1 Cysteine desulfurase, mitochondrial yes no 2 0.035749 69.628 1 0.99639 1.28 NaN 1 Median 0.99639 1.28 NaN 1 0 Median NaN NaN NaN 0 0 Median 438230 253720 184500 438230 253720 184500 0 0 0 5012 691 5124 17844 26993 26993 1 HLIVLINK QTREHAMLAKTAGVKHLIVLINKMDDPTVN AKTAGVKHLIVLINKMDDPTVNWSNERYEE K H L N K M 0 0 1 0 0 0 0 0 1 2 2 1 0 0 0 0 0 0 0 1 0 0 8 0 948.61204 Q8IYD1;B4DQM6;H3BR35;Q7KZX8;B2RCT6;A8K2W7;P15170 H3BR35 220 227 GSPT2;GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3B;Eukaryotic peptide chain release factor GTP-binding subunit ERF3A no no 2 0.00013665 126.68 1 0.42091 0.53454 NaN 1 Median 0.42091 0.53454 NaN 1 0 Median NaN NaN NaN 0 0 Median 5681900 3949700 1732200 5681900 3949700 1732200 0 0 0 5013 586;1629 5125 17845 26994 26994 1 HLIYYR KYKLMRQIRMCKDLKHLIYYRFNTGPVGKG QIRMCKDLKHLIYYRFNTGPVGKGPGCGFW K H L Y R F 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 2 0 0 0 6 0 863.46537 Q6P2Q9;I3L0J9 Q6P2Q9 610 615 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.024803 96.337 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5090200 0 5090200 5090200 0 5090200 0 0 0 5014 1592 5126 17846 26995 26995 1 HLLAVHSK KFCEYETAEQGLLNRHLLAVHSKNFPHICV EQGLLNRHLLAVHSKNFPHICVECGKGFRH R H L S K N 1 0 0 0 0 0 0 0 2 0 2 1 0 0 0 1 0 0 0 1 0 0 8 0 903.52904 A0A024RC04;B7ZKJ5;P17010;Q8WWU0;Q8WXB7;E9PEP7;P08048;B4DH67;B4DS73;Q9Y462 A0A024RC04 537 544 ZFX;ZFY;ZNF711 Zinc finger X-chromosomal protein;Zinc finger Y-chromosomal protein;Zinc finger protein 711 yes no 2 0.00010409 128.57 1 0.43792 0.57681 NaN 1 Median 0.43792 0.57681 NaN 1 0 Median NaN NaN NaN 0 0 Median 2169200 1432100 737090 2169200 1432100 737090 0 0 0 5015 286 5127 17847 26996 26996 1 HLLEGQNASVLAYGPTGAGK TQQDIYAGSVQPILRHLLEGQNASVLAYGP QNASVLAYGPTGAGKTHTMLGSPEQPGVIP R H L G K T 3 0 1 0 0 1 1 4 1 0 3 1 0 0 1 1 1 0 1 1 0 0 20 0 1982.0221 Q14807;A0A024R632;B7Z9T5;H3BRB3;H3BTH5 Q14807 114 133 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 3 1.0087E-09 75.703 4 1 0.83948 1.0814 23.519 5 Median 0.92707 1.1786 11.464 4 0 Median 0.49166 0.72589 NaN 1 0 Median 57315000 31483000 25831000 50460000 27189000 23271000 6855000 4294200 2560700 5016 1497 5128 17848;17849;17850;17851;17852 26997;26998;26999;27000;27001;27002 27000 6 HLLGVEDLLQK MDEMKVLVLSQDYGKHLLGVEDLLQKHTLV DYGKHLLGVEDLLQKHTLVEADIGIQAERV K H L Q K H 0 0 0 1 0 1 1 1 1 0 4 1 0 0 0 0 0 0 0 1 0 0 11 0 1263.7187 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;F8W6C1 B2ZZ89 559 569 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.0026938 101.65 2 0.72835 0.91467 28.585 2 Median 0.72835 0.91467 28.585 2 0 Median NaN NaN NaN 0 0 Median 17337000 10981000 6355900 17337000 10981000 6355900 0 0 0 5017 346 5129 17853;17854 27003;27004;27005 27004 3 HLLIGLPSGAILSLPK SAMEATITERGITSRHLLIGLPSGAILSLP LLIGLPSGAILSLPKALLDPRRPEIPTEQS R H L P K A 1 0 0 0 0 0 0 2 1 2 5 1 0 0 2 2 0 0 0 0 0 0 16 0 1628.0025 Q8N766;H7C4E3 Q8N766 860 875 EMC1 ER membrane protein complex subunit 1 yes no 3 0.0011975 38.376 1 1 0.56217 0.75355 16.213 2 Median 0.5252 0.67193 NaN 1 0 Median 0.60173 0.84509 NaN 1 0 Median 7260900 4055400 3205500 3098000 1794800 1303200 4162900 2260600 1902300 5018 1642 5130 17855;17856 27006;27007;27008 27007 3 HLLSQPLFTESQK RRRQKQMKVLKKELRHLLSQPLFTESQKTK LRHLLSQPLFTESQKTKYPTQSGKPPLLVS R H L Q K T 0 0 0 0 0 2 1 0 1 0 3 1 0 1 1 2 1 0 0 0 0 0 13 0 1526.8093 B4DKV2;G3V529;Q9GZR7;F5GYL3;B4E300;A0A087WXU8;Q7Z4X3;Q7Z4W0 B4DKV2 701 713 DDX24 ATP-dependent RNA helicase DDX24 yes no 2 1.5352E-12 161.19 4 2 0.97186 1.3221 11.886 6 Median 1.0073 1.2689 13.998 4 0 Median 0.93219 1.382 1.3445 2 0 Median 41032000 20800000 20231000 26312000 12710000 13602000 14720000 8090600 6629200 5019 822 5131 17857;17858;17859;17860;17861;17862 27009;27010;27011;27012;27013;27014;27015;27016;27017 27011 9 HLLTLK NKLSVVDQKLSSEIRHLLTLKDDAVKKELI DQKLSSEIRHLLTLKDDAVKKELIPKAKST R H L L K D 0 0 0 0 0 0 0 0 1 0 3 1 0 0 0 0 1 0 0 0 0 0 6 0 723.46431 Q9NQZ2 Q9NQZ2 324 329 UTP3 Something about silencing protein 10 yes yes 2 0.052463 69.093 1 0.74447 1.0957 NaN 1 Median NaN NaN NaN 0 0 Median 0.74447 1.0957 NaN 1 0 Median 8110000 4405300 3704700 0 0 0 8110000 4405300 3704700 5020 1755 5132 17863 27018 27018 1 HLLVSNVGGDGEEIER GSLMFHKLRPVDQLRHLLVSNVGGDGEEIE LLVSNVGGDGEEIERFFKLHQEDQACATCL R H L E R F 0 1 1 1 0 0 3 3 1 1 2 0 0 0 0 1 0 0 0 2 0 0 16 0 1722.8537 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 484 499 NUP155 Nuclear pore complex protein Nup155 yes no 2;3 2.1433E-10 94.487 3 0.34953 0.4743 10.48 2 Median 0.34953 0.4743 10.48 2 0 Median NaN NaN NaN 0 0 Median 21014000 16253000 4761400 21014000 16253000 4761400 0 0 0 5021 29 5133 17864;17865;17866 27019;27020;27021;27022 27020 4 HLMLPDFDLLEDIESK PLSGGDQYQNITVHRHLMLPDFDLLEDIES LMLPDFDLLEDIESKIQPGSQQADFLDALI R H L S K I 0 0 0 3 0 0 2 0 1 1 4 1 1 1 1 1 0 0 0 0 0 0 16 0 1913.9445 P13010;Q53TC2;C9JZ81 P13010 82 97 XRCC5 X-ray repair cross-complementing protein 5 yes no 3 1.9906E-07 107.13 4 0.57134 0.72529 10.497 3 Median 0.57134 0.72529 10.497 3 0 Median NaN NaN NaN 0 0 Median 33326000 22919000 10407000 33326000 22919000 10407000 0 0 0 5022 1262 5134;5135 17867;17868;17869;17870 27023;27024;27025;27026;27027 27025 523 5 HLMQDLR RILIFSSRGINFRTRHLMQDLRMLMPHSKA RGINFRTRHLMQDLRMLMPHSKADTKMDRK R H L L R M 0 1 0 1 0 1 0 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 7 0 911.46472 Q8TDN6;A0JLQ5;B4E0B8;Q9NUW4 Q8TDN6 76 82 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 2 0.047531 51.787 1 0.87882 1.148 NaN 1 Median 0.87882 1.148 NaN 1 0 Median NaN NaN NaN 0 0 Median 7541600 3849800 3691800 7541600 3849800 3691800 0 0 0 5023 1659 5136 17871 27028 27028 1 HLNEIDLFHCIDPNDSK SKLTFSCLGGSDNFKHLNEIDLFHCIDPND NEIDLFHCIDPNDSKHKRTDRSILCCLRKG K H L S K H 0 0 2 3 1 0 1 0 2 2 2 1 0 1 1 1 0 0 0 0 0 0 17 0 2065.9527 A0A024RB32;A0A087WYT3;B3KUY2;Q15185 A0A024RB32 49 65 PTGES3 Prostaglandin E synthase 3 yes no 3 0.00013883 88.951 4 0.36542 0.46045 10.127 4 Median 0.36542 0.46045 10.127 4 0 Median NaN NaN NaN 0 0 Median 149160000 111940000 37220000 149160000 111940000 37220000 0 0 0 5024 259 5137 17872;17873;17874;17875 27029;27030;27031;27032 27030 4 HLPDNECIEK EQKVNPREIAENITKHLPDNECIEKVEIAG ENITKHLPDNECIEKVEIAGPGFINVHLRK K H L E K V 0 0 1 1 1 0 2 0 1 1 1 1 0 0 1 0 0 0 0 0 0 0 10 0 1253.571 P54136 P54136 144 153 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 0.0010277 115.23 2 0.45665 0.58163 15.145 2 Median 0.45665 0.58163 15.145 2 0 Median NaN NaN NaN 0 0 Median 7484600 5111200 2373400 7484600 5111200 2373400 0 0 0 5025 1373 5138 17876;17877 27033;27034 27034 2 HLPEPVAIK PEELIQKWNTKKTKKHLPEPVAIKFLASDL TKKTKKHLPEPVAIKFLASDLDQKMKSISL K H L I K F 1 0 0 0 0 0 1 0 1 1 1 1 0 0 2 0 0 0 0 1 0 0 9 0 1002.5862 O75691;B4DN27 O75691 2511 2519 UTP20 Small subunit processome component 20 homolog yes no 2 0.032089 43.808 1 0.76885 1.0929 NaN 1 Median NaN NaN NaN 0 0 Median 0.76885 1.0929 NaN 1 0 Median 4607600 2131100 2476500 0 0 0 4607600 2131100 2476500 5026 1207 5139 17878 27035 27035 1 HLPGHPYVR CMVKTEQCLVALLHKHLPGHPYVRRKRKKF VALLHKHLPGHPYVRRKRKKFPDRLAEDEG K H L V R R 0 1 0 0 0 0 0 1 2 0 1 0 0 0 2 0 0 0 1 1 0 0 9 0 1074.5723 Q9UIG0 Q9UIG0 1443 1451 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2;3 0.00073634 81.548 4 33.61 44.779 NaN 1 Median 33.61 44.779 NaN 1 0 Median NaN NaN NaN 0 0 Median 78881000 1153200 77727000 78881000 1153200 77727000 0 0 0 5027 1786 5140 17879;17880;17881;17882 27036;27037;27038;27039 27039 4 HLPGVCK SSMTRAIETTDIISRHLPGVCKVSTDLLRE ETTDIISRHLPGVCKVSTDLLREGAPIEPD R H L C K V 0 0 0 0 1 0 0 1 1 0 1 1 0 0 1 0 0 0 0 1 0 0 7 0 809.42179 Q96HS1;F5GXG4 Q96HS1 163 169 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 2 0.011655 79.833 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5028 1688 5141 17883 27040 27040 1 HLPNLLDETQIFSYFSQFGTVTR RKKQEQLTPGVVYVRHLPNLLDETQIFSYF TQIFSYFSQFGTVTRFRLSRSKRTGNSKGY R H L T R F 0 1 1 1 0 2 1 1 1 1 3 0 0 3 1 2 3 0 1 1 0 0 23 0 2712.3548 Q9BYG3;B4DSM4 Q9BYG3 51 73 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 3 1.289E-08 66.3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36025000 36025000 0 36025000 36025000 0 0 0 0 5029 1726 5142 17884 27041 27041 1 HLPPAALHLIAYYK RNSGGTPRTSSKPHKHLPPAALHLIAYYKE KHLPPAALHLIAYYKENKDREDKRSALSCV K H L Y K E 3 0 0 0 0 0 0 0 2 1 3 1 0 0 2 0 0 0 2 0 0 0 14 0 1605.9031 Q9UIG0 Q9UIG0 470 483 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 0.0028528 99.539 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25855000 0 25855000 20385000 0 20385000 5470600 0 5470600 5030 1786 5143 17885;17886;17887 27042;27043;27044;27045 27042 4 HLPPQLR GGVNQYVVQEVLSIKHLPPQLRAFQAAFRA VQEVLSIKHLPPQLRAFQAAFRAQGPLAML K H L L R A 0 1 0 0 0 1 0 0 1 0 2 0 0 0 2 0 0 0 0 0 0 0 7 0 859.50282 B3KMS0;Q15021;B3KY03;E7EN77;Q6ZV00;A0PJ76;F5GZK7;F5H431 B3KMS0 36 42 NCAPD2 Condensin complex subunit 1 yes no 2 0.046478 52.231 1 0.46091 0.63459 NaN 1 Median NaN NaN NaN 0 0 Median 0.46091 0.63459 NaN 1 0 Median 5884600 3632900 2251700 0 0 0 5884600 3632900 2251700 5031 757 5144 17888 27046 27046 1 HLPSTEPDPHVVR RVCFEMKINEEISVKHLPSTEPDPHVVRIG VKHLPSTEPDPHVVRIGWSLDSCSTQLGEE K H L V R I 0 1 0 1 0 0 1 0 2 0 1 0 0 0 3 1 1 0 0 2 0 0 13 0 1482.7579 M0R3F1;A8K3W4;A0A024R0J9;A0A0A0MRA5;B7Z4B8;A8K6U7;Q9BUJ2;A8K5K0;M0QYZ0;M0QYI8;M0QYM5 M0R3F1 120 132 HNRNPUL1;HNRPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 3 1.0972E-08 79.089 3 0.52541 0.72091 8.4793 3 Median 0.52541 0.72091 8.4793 3 0 Median NaN NaN NaN 0 0 Median 58962000 36854000 22108000 58962000 36854000 22108000 0 0 0 5032 39 5145 17889;17890;17891 27047;27048;27049;27050;27051;27052 27051 6 HLQDLMEGLTAK EDDLFDRLNTGILNKHLQDLMEGLTAKVFR LNKHLQDLMEGLTAKVFRTYNASITLQQQL K H L A K V 1 0 0 1 0 1 1 1 1 0 3 1 1 0 0 0 1 0 0 0 0 0 12 0 1354.6915 P11387;B9EG90 P11387 576 587 TOP1 DNA topoisomerase 1 yes no 2 6.5152E-08 150.51 9 1 0.74872 0.9614 5.9087 8 Median 0.75487 0.955 5.5285 7 0 Median 0.6956 1.0494 NaN 1 0 Median 83852000 50270000 33582000 66485000 40493000 25992000 17367000 9776600 7590500 5033 1255 5146;5147 17892;17893;17894;17895;17896;17897;17898;17899;17900;17901 27053;27054;27055;27056;27057;27058;27059;27060;27061;27062;27063;27064;27065;27066;27067 27062 500 15 HLQLAIR GNAARDNKKTRIIPRHLQLAIRNDEELNKL KKTRIIPRHLQLAIRNDEELNKLLGKVTIA R H L I R N 1 1 0 0 0 1 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 7 0 849.51847 Q08AJ9;A0A024R017;Q93077;Q7L7L0;P04908;A3KPC7;A0A024RAS2;B2R5B3;A4FTV9;A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8;H0YFX9;B4E0B3;B2R5B6;Q71UI9;P0C0S5;C9J0D1;C9J386;Q96QV6;P16104 A3KPC7 83 89 HIST1H2AB;HIST1H2AC;HIST3H2A;HIST1H2AH;H2AFJ;HIST1H2AK;HIST1H2AJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFV;H2AFZ;HIST1H2AA;H2AFX Histone H2A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A.V;Histone H2A.Z;Histone H2A type 1-A;Histone H2AX no no 2 2.7783E-13 180.48 215 39 0.69736 0.95748 10.059 84 Median 0.70045 0.96019 9.9567 79 0 Median 0.6149 0.88677 7.4897 5 0 Median 15579000000 12654000000 2924800000 13226000000 10346000000 2880300000 2352500000 2308000000 44523000 5034 248;26;689;1271;1249 5148 17902;17903;17904;17905;17906;17907;17908;17909;17910;17911;17912;17913;17914;17915;17916;17917;17918;17919;17920;17921;17922;17923;17924;17925;17926;17927;17928;17929;17930;17931;17932;17933;17934;17935;17936;17937;17938;17939;17940;17941;17942;17943;17944;17945;17946;17947;17948;17949;17950;17951;17952;17953;17954;17955;17956;17957;17958;17959;17960;17961;17962;17963;17964;17965;17966;17967;17968;17969;17970;17971;17972;17973;17974;17975;17976;17977;17978;17979;17980;17981;17982;17983;17984;17985;17986;17987;17988;17989;17990;17991;17992;17993;17994;17995;17996;17997;17998;17999;18000;18001;18002;18003;18004;18005;18006;18007;18008;18009;18010;18011;18012;18013;18014;18015;18016;18017;18018;18019;18020;18021;18022;18023;18024;18025;18026;18027;18028;18029;18030;18031;18032;18033;18034;18035;18036;18037;18038;18039;18040;18041;18042;18043;18044;18045;18046;18047;18048;18049;18050;18051;18052;18053;18054;18055;18056;18057;18058;18059;18060;18061;18062;18063;18064;18065;18066;18067;18068;18069;18070;18071;18072;18073;18074;18075;18076;18077;18078;18079;18080;18081;18082;18083;18084;18085;18086;18087;18088;18089;18090;18091;18092;18093;18094;18095;18096;18097;18098;18099;18100;18101;18102;18103;18104;18105;18106;18107;18108;18109;18110;18111;18112;18113;18114;18115;18116;18117;18118;18119;18120;18121;18122;18123;18124;18125;18126;18127;18128;18129;18130;18131;18132;18133;18134;18135;18136;18137;18138;18139;18140;18141;18142;18143;18144;18145;18146;18147;18148;18149;18150;18151;18152;18153;18154;18155 27068;27069;27070;27071;27072;27073;27074;27075;27076;27077;27078;27079;27080;27081;27082;27083;27084;27085;27086;27087;27088;27089;27090;27091;27092;27093;27094;27095;27096;27097;27098;27099;27100;27101;27102;27103;27104;27105;27106;27107;27108;27109;27110;27111;27112;27113;27114;27115;27116;27117;27118;27119;27120;27121;27122;27123;27124;27125;27126;27127;27128;27129;27130;27131;27132;27133;27134;27135;27136;27137;27138;27139;27140;27141;27142;27143;27144;27145;27146;27147;27148;27149;27150;27151;27152;27153;27154;27155;27156;27157;27158;27159;27160;27161;27162;27163;27164;27165;27166;27167;27168;27169;27170;27171;27172;27173;27174;27175;27176;27177;27178;27179;27180;27181;27182;27183;27184;27185;27186;27187;27188;27189;27190;27191;27192;27193;27194;27195;27196;27197;27198;27199;27200;27201;27202;27203;27204;27205;27206;27207;27208;27209;27210;27211;27212;27213;27214;27215;27216;27217;27218;27219;27220;27221;27222;27223;27224;27225;27226;27227;27228;27229;27230;27231;27232;27233;27234;27235;27236;27237;27238;27239;27240;27241;27242;27243;27244;27245;27246;27247;27248;27249;27250;27251;27252;27253;27254;27255;27256;27257;27258;27259;27260;27261;27262;27263;27264;27265;27266;27267;27268;27269;27270;27271;27272;27273;27274;27275;27276;27277;27278;27279;27280;27281;27282;27283;27284;27285;27286;27287;27288;27289;27290;27291;27292;27293;27294;27295;27296;27297;27298;27299;27300;27301;27302;27303;27304;27305;27306;27307;27308;27309;27310;27311;27312;27313;27314;27315;27316;27317;27318;27319;27320;27321;27322;27323;27324;27325;27326;27327;27328;27329;27330;27331;27332;27333;27334;27335;27336;27337;27338;27339;27340;27341;27342;27343;27344;27345;27346;27347;27348;27349;27350;27351;27352;27353;27354;27355;27356;27357;27358;27359;27360;27361;27362;27363;27364;27365;27366;27367;27368;27369;27370;27371;27372;27373;27374;27375;27376;27377;27378;27379;27380;27381;27382;27383;27384;27385;27386;27387;27388;27389;27390;27391;27392;27393;27394;27395;27396;27397;27398;27399;27400;27401;27402;27403;27404;27405;27406;27407;27408;27409;27410;27411;27412 27280 345 HLQLAIRGDEELDSLIK GNASKDLKVKRITPRHLQLAIRGDEELDSL QLAIRGDEELDSLIKATIAGGGVIPHIHKS R H L I K A 1 1 0 2 0 1 2 1 1 2 4 1 0 0 0 1 0 0 0 0 0 0 17 1 1949.0582 Q71UI9;P0C0S5;C9J0D1;C9J386 Q71UI9 86 102 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z;Histone H2A yes no 2;3;4 1.2418E-66 183.06 41 12 0.68446 0.93337 40.494 46 Median 0.70936 0.93178 45.6 36 0 Median 0.60166 1.0256 10.373 10 0 Median 10167000000 5933500000 4234000000 9340800000 5418900000 3921800000 826700000 514560000 312140000 5035 1249 5149 18156;18157;18158;18159;18160;18161;18162;18163;18164;18165;18166;18167;18168;18169;18170;18171;18172;18173;18174;18175;18176;18177;18178;18179;18180;18181;18182;18183;18184;18185;18186;18187;18188;18189;18190;18191;18192;18193;18194;18195;18196;18197;18198;18199;18200;18201;18202;18203;18204;18205;18206;18207;18208 27413;27414;27415;27416;27417;27418;27419;27420;27421;27422;27423;27424;27425;27426;27427;27428;27429;27430;27431;27432;27433;27434;27435;27436;27437;27438;27439;27440;27441;27442;27443;27444;27445;27446;27447;27448;27449;27450;27451;27452;27453;27454;27455;27456;27457;27458;27459;27460;27461;27462;27463;27464;27465;27466;27467;27468;27469;27470;27471;27472;27473;27474;27475;27476;27477;27478;27479;27480;27481;27482;27483;27484;27485;27486;27487;27488;27489;27490 27463 76 HLQLAIRNDEELNK GNAARDNKKTRIIPRHLQLAIRNDEELNKL RHLQLAIRNDEELNKLLGKVTIAQGGVLPN R H L N K L 1 1 2 1 0 1 2 0 1 1 3 1 0 0 0 0 0 0 0 0 0 0 14 1 1691.8955 Q08AJ9;A0A024R017;Q93077;Q7L7L0;P04908;A3KPC7;A0A024RAS2;B2R5B3;A4FTV9;A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8;H0YFX9;B4E0B3;B2R5B6;Q96QV6;P16104 A3KPC7 83 96 HIST1H2AB;HIST1H2AC;HIST3H2A;HIST1H2AH;H2AFJ;HIST1H2AK;HIST1H2AJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AA;H2AFX Histone H2A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-A;Histone H2AX no no 2;3;4 6.371E-131 244.71 54 6 0.72667 0.98448 17.821 43 Median 0.73327 0.97558 19.087 37 0 Median 0.6093 1.0005 3.6133 6 0 Median 16615000000 9314300000 7300600000 14723000000 8178900000 6544500000 1891600000 1135500000 756100000 5036 248;26;689;1271 5150 18209;18210;18211;18212;18213;18214;18215;18216;18217;18218;18219;18220;18221;18222;18223;18224;18225;18226;18227;18228;18229;18230;18231;18232;18233;18234;18235;18236;18237;18238;18239;18240;18241;18242;18243;18244;18245;18246;18247;18248;18249;18250;18251;18252;18253;18254;18255;18256;18257;18258;18259;18260;18261;18262;18263;18264;18265;18266;18267;18268 27491;27492;27493;27494;27495;27496;27497;27498;27499;27500;27501;27502;27503;27504;27505;27506;27507;27508;27509;27510;27511;27512;27513;27514;27515;27516;27517;27518;27519;27520;27521;27522;27523;27524;27525;27526;27527;27528;27529;27530;27531;27532;27533;27534;27535;27536;27537;27538;27539;27540;27541;27542;27543;27544;27545;27546;27547;27548;27549;27550;27551;27552;27553;27554;27555;27556;27557;27558;27559;27560;27561;27562;27563;27564;27565;27566;27567;27568;27569;27570;27571;27572;27573;27574;27575;27576;27577;27578;27579;27580;27581;27582;27583;27584;27585;27586;27587;27588;27589;27590;27591;27592;27593;27594;27595;27596;27597;27598 27530 103 HLQLAIRNDEELNKLLGK GNAARDNKKTRIIPRHLQLAIRNDEELNKL LAIRNDEELNKLLGKVTIAQGGVLPNIQAV R H L G K V 1 1 2 1 0 1 2 1 1 1 5 2 0 0 0 0 0 0 0 0 0 0 18 2 2103.18 A3KPC7;A0A024RAS2;B2R5B3;A4FTV9;A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8;H0YFX9;B4E0B3;B2R5B6 A3KPC7 83 100 HIST1H2AH;H2AFJ;HIST1H2AK;HIST1H2AJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG Histone H2A;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1 no no 4 0.029967 15.155 1 0.65439 0.76348 NaN 1 Median 0.65439 0.76348 NaN 1 0 Median NaN NaN NaN 0 0 Median 5055500 2698000 2357600 5055500 2698000 2357600 0 0 0 5037 248;689 5151 18269 27599 27599 1 HLQLAVR GNAARDNKKTRIIPRHLQLAVRNDEELNKL KKTRIIPRHLQLAVRNDEELNKLLGGVTIA R H L V R N 1 1 0 0 0 1 0 0 1 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 835.50282 Q8IUE6;A2RUA4 Q8IUE6 83 89 HIST2H2AB Histone H2A type 2-B;Histone H2A yes no 2 3.0186E-10 178.02 13 2 0.59032 1.0602 13.726 7 Linear 0.63088 0.85772 16.077 5 0 Median 0.50288 0.83096 4.1577 2 0 Median 5085900000 3897000000 1188900000 4635600000 3594800000 1040800000 450370000 302280000 148090000 5038 1622 5152 18270;18271;18272;18273;18274;18275;18276;18277;18278;18279;18280;18281;18282;18283;18284 27600;27601;27602;27603;27604;27605;27606;27607;27608;27609;27610;27611;27612;27613;27614;27615;27616;27617;27618;27619;27620;27621;27622;27623;27624;27625;27626;27627;27628 27607 29 HLQLAVRNDEELNK GNAARDNKKTRIIPRHLQLAVRNDEELNKL RHLQLAVRNDEELNKLLGGVTIAQGGVLPN R H L N K L 1 1 2 1 0 1 2 0 1 0 3 1 0 0 0 0 0 0 0 1 0 0 14 1 1677.8798 Q8IUE6;A2RUA4 Q8IUE6 83 96 HIST2H2AB Histone H2A type 2-B;Histone H2A yes no 3 1.1694E-05 100.09 4 0.74532 0.98098 37.632 4 Median 0.74532 0.98098 37.632 4 0 Median NaN NaN NaN 0 0 Median 87797000 49482000 38314000 87797000 49482000 38314000 0 0 0 5039 1622 5153 18285;18286;18287;18288 27629;27630;27631;27632;27633;27634;27635 27635 7 HLQTGENHTSVDPR RYEKLTPVPDSFFAKHLQTGENHTSVDPRQ KHLQTGENHTSVDPRQTQFGGLNTPYPGGL K H L P R Q 0 1 1 1 0 1 1 1 2 0 1 0 0 0 1 1 2 0 0 1 0 0 14 0 1589.7546 O94906 O94906 190 203 PRPF6 Pre-mRNA-processing factor 6 yes yes 2;3 4.0031E-05 110.93 4 0.49203 0.66448 8.4598 4 Linear 0.49203 0.66448 8.4598 4 0 Linear NaN NaN NaN 0 0 Median 34133000 23759000 10375000 34133000 23759000 10375000 0 0 0 5040 1212 5154 18289;18290;18291;18292 27636;27637;27638;27639;27640 27637 5 HLRDEGLR KRLQGEMMKLSEENRHLRDEGLRLRKVAHS KLSEENRHLRDEGLRLRKVAHSDKPGSTST R H L L R L 0 2 0 1 0 0 1 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 8 1 994.53083 A8KA83;Q9P0L0 A8KA83 188 195 VAPA Vesicle-associated membrane protein-associated protein A yes no 3 0.019002 75.213 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7358500 7358500 0 7358500 7358500 0 0 0 0 5041 653 5155 18293;18294 27641;27642 27642 2 HLSESSGKPLSTK EAKAATSPKATMSPRHLSESSGKPLSTKQE PRHLSESSGKPLSTKQEASKPPRGCPQANR R H L T K Q 0 0 0 0 0 0 1 1 1 0 2 2 0 0 1 4 1 0 0 0 0 0 13 1 1369.7201 Q8IVT2 Q8IVT2 469 481 MISP Mitotic interactor and substrate of PLK1 yes yes 2;3 0.0046347 110.92 2 0.46417 0.56019 NaN 1 Median 0.46417 0.56019 NaN 1 0 Median NaN NaN NaN 0 0 Median 2087300 1654400 432930 2087300 1654400 432930 0 0 0 5042 1624 5156 18295;18296 27643;27644 27643 2 HLTDAYFK ATSTKIDISNVKIPKHLTDAYFKKKKLRKP SNVKIPKHLTDAYFKKKKLRKPRHQEGEIF K H L F K K 1 0 0 1 0 0 0 0 1 0 1 1 0 1 0 0 1 0 1 0 0 0 8 0 993.49198 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B4DRX3 Q8TBK5 211 218 RPL6 60S ribosomal protein L6 yes no 2 2.6303E-07 166.78 5 2 0.73178 0.97026 4.1821 6 Median 0.73962 0.98064 4.2047 4 0 Median 0.59893 0.9469 1.7409 2 0 Median 1871400000 1091000000 780400000 1605000000 919110000 685880000 266370000 171840000 94526000 5043 277 5157 18297;18298;18299;18300;18301;18302;18303 27645;27646;27647;27648;27649;27650;27651;27652;27653;27654;27655;27656;27657;27658 27650 14 HLTDAYFKK ATSTKIDISNVKIPKHLTDAYFKKKKLRKP NVKIPKHLTDAYFKKKKLRKPRHQEGEIFD K H L K K K 1 0 0 1 0 0 0 0 1 0 1 2 0 1 0 0 1 0 1 0 0 0 9 1 1121.5869 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B4DRX3 Q8TBK5 211 219 RPL6 60S ribosomal protein L6 yes no 3 9.0758E-05 108.98 3 0.7983 0.97977 NaN 1 Median 0.7983 0.97977 NaN 1 0 Median NaN NaN NaN 0 0 Median 24731000 8124500 16606000 24731000 8124500 16606000 0 0 0 5044 277 5158 18304;18305;18306 27659;27660;27661 27659 3 HLTGEFEK LVGDGGTGKTTFVKRHLTGEFEKKYVATLG KTTFVKRHLTGEFEKKYVATLGVEVHPLVF R H L E K K 0 0 0 0 0 0 2 1 1 0 1 1 0 1 0 0 1 0 0 0 0 0 8 0 959.47125 B5MDF5;P62826;J3KQE5;F5H018;H0YFC6 B5MDF5 30 37 RAN GTP-binding nuclear protein Ran yes no 2 2.9912E-10 161.68 3 4 0.46798 0.5647 NaN 1 Median 0.46798 0.5647 NaN 1 0 Median NaN NaN NaN 0 0 Median 70522000 61191000 9330700 54860000 45530000 9330700 15662000 15662000 0 5045 901 5159 18307;18308;18309;18310;18311;18312;18313 27662;27663;27664;27665;27666;27667;27668 27662 7 HLTVPK GEEEIKTYRSEEKRKHLTVPKENKIPTVSK TYRSEEKRKHLTVPKENKIPTVSKNHAHEH K H L P K E 0 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 1 0 0 1 0 0 6 0 693.41736 Q8WWQ0 Q8WWQ0 759 764 PHIP PH-interacting protein yes yes 2 0.034456 99.228 3 2 0.90854 1.1241 6.3502 5 Linear 0.89393 1.1183 0.5507 3 0 Plateau 0.82517 1.254 1.6654 2 0 Median 175070000 93226000 81845000 134920000 71468000 63448000 40155000 21758000 18397000 5046 1668 5160 18314;18315;18316;18317;18318 27669;27670;27671;27672;27673 27671 5 HLTYNDFINK LHGLPEQFLYGTATKHLTYNDFINKELILF GTATKHLTYNDFINKELILFSNSDNERSIP K H L N K E 0 0 2 1 0 0 0 0 1 1 1 1 0 1 0 0 1 0 1 0 0 0 10 0 1263.6248 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80 Q71UH4 685 694 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 6.6315E-25 207.29 4 2 0.6482 0.83028 1.1865 6 Median 0.6566 0.82879 0.29147 4 0 Median 0.55737 0.84219 1.7871 2 0 Median 125210000 75178000 50036000 95050000 56105000 38944000 30165000 19073000 11092000 5047 1437 5161 18319;18320;18321;18322;18323;18324 27674;27675;27676;27677;27678;27679;27680;27681;27682;27683 27676 10 HLVDEPQNLIK DDPHACYSTVFDKLKHLVDEPQNLIKQNCD DKLKHLVDEPQNLIKQNCDQFEKLGEYGFQ K H L I K Q 0 0 1 1 0 1 1 0 1 1 2 1 0 0 1 0 0 0 0 1 0 0 11 0 1304.7089 CON__P02769 CON__P02769 402 412 yes yes 2 0.013694 54.416 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9239200 9239200 0 7303700 7303700 0 1935500 1935500 0 + 5048 952 5162 18325;18326 27684;27685 27684 2 HLVGVCYTEDEAK QVCASCHSMDFVAYRHLVGVCYTEDEAKEL YRHLVGVCYTEDEAKELAAEVEVQDGPNED R H L A K E 1 0 0 1 1 0 2 1 1 0 1 1 0 0 0 0 1 0 1 2 0 0 13 0 1519.6977 Q8TBT6;P08574 Q8TBT6 124 136 CYC1 Cytochrome c1, heme protein, mitochondrial yes no 2 8.6031E-11 118.4 2 0.58699 0.76224 11.329 2 Median 0.58699 0.76224 11.329 2 0 Median NaN NaN NaN 0 0 Median 9641000 5651400 3989600 9641000 5651400 3989600 0 0 0 5049 1244 5163 18327;18328 27686;27687;27688 27687 3 HLVGVDSLIGPETQIGEK PEEPPVHSSAQIVSKHLVGVDSLIGPETQI GVDSLIGPETQIGEKSSIKRSVIGSSCLIK K H L E K S 0 0 0 1 0 1 2 3 1 2 2 1 0 0 1 1 1 0 0 2 0 0 18 0 1891.0051 H0Y580;Q9HA31;Q9NR50 H0Y580 171 188 EIF2B3 Translation initiation factor eIF-2B subunit gamma yes no 3 0.0057328 64.275 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1220700 1220700 0 1220700 1220700 0 0 0 0 5050 1090 5164 18329 27689 27689 1 HLVSPEALDLLDK HSRKRWENFIHSENRHLVSPEALDLLDKLL NRHLVSPEALDLLDKLLRYDHQQRLTAKEA R H L D K L 1 0 0 2 0 0 1 0 1 0 4 1 0 0 1 1 0 0 0 1 0 0 13 0 1448.7875 P19784;H3BV19;H3BSA1 P19784 292 304 CSNK2A2 Casein kinase II subunit alpha yes no 2 0.02039 66.663 1 0.63244 0.8231 NaN 1 Median 0.63244 0.8231 NaN 1 0 Median NaN NaN NaN 0 0 Median 4834100 2752500 2081600 4834100 2752500 2081600 0 0 0 5051 1284 5165 18330 27690 27690 1 HLYTLDGGDIINALCFSPNR GKDGQAMLWDLNEGKHLYTLDGGDIINALC DGGDIINALCFSPNRYWLCAATGPSIKIWD K H L N R Y 1 1 2 2 1 0 0 2 1 2 3 0 0 1 1 1 1 0 1 0 0 0 20 0 2275.1056 E9KL35;P63244;D6R9Z1;D6R9L0;J3KPE3;H0Y8W2;H0YAF8;H0YAM7;D6RAC2;D6REE5;H0Y8R5;D6RF23 E9KL35 226 245 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 3 1.2241E-24 138.05 4 2 0.91231 1.2234 44.725 6 Median 0.85139 1.145 7.4367 4 0 Median 1.9117 2.718 2.4511 2 0 Median 141180000 72678000 68500000 121250000 66334000 54912000 19932000 6344700 13588000 5052 1019 5166 18331;18332;18333;18334;18335;18336 27691;27692;27693;27694;27695;27696;27697;27698;27699;27700;27701;27702;27703;27704;27705;27706;27707 27699 17 HMLPSGFR ILMPNIGYGSNKKTKHMLPSGFRKFLVHNV GSNKKTKHMLPSGFRKFLVHNVKELEVLLM K H M F R K 0 1 0 0 0 0 0 1 1 0 1 0 1 1 1 1 0 0 0 0 0 0 8 0 943.46981 D3YTB1;A0A024R2G7;F8W727;P62910 D3YTB1 68 75 RPL32 60S ribosomal protein L32 yes no 2 0.0066481 69.176 2 0.5503 0.87049 4.279 2 Median NaN NaN NaN 0 0 Median 0.5503 0.87049 4.279 2 0 Median 69283000 43523000 25760000 0 0 0 69283000 43523000 25760000 5053 85 5167 18337;18338 27708;27709;27710;27711 27711 50 4 HMLPSGFRK ILMPNIGYGSNKKTKHMLPSGFRKFLVHNV SNKKTKHMLPSGFRKFLVHNVKELEVLLMC K H M R K F 0 1 0 0 0 0 0 1 1 0 1 1 1 1 1 1 0 0 0 0 0 0 9 1 1071.5648 D3YTB1;A0A024R2G7;F8W727;P62910 D3YTB1 68 76 RPL32 60S ribosomal protein L32 yes no 3 0.0065556 66.692 4 0.67628 0.90878 26.693 3 Median 0.67628 0.90878 26.693 3 0 Median NaN NaN NaN 0 0 Median 23043000 11853000 11190000 23043000 11853000 11190000 0 0 0 5054 85 5168;5169 18339;18340;18341;18342 27712;27713;27714;27715;27716 27715 50 5 HNAVIEHLK PSQGQPQSQPQVVMKHNAVIEHLKQKKSMT PQVVMKHNAVIEHLKQKKSMTPAEREENQR K H N L K Q 1 0 1 0 0 0 1 0 2 1 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1059.5825 E7ETD6;Q12830;Q9H5E0;J3KSK9;E9PE19;B4DJV8 E7ETD6 2388 2396 BPTF Nucleosome-remodeling factor subunit BPTF yes no 3 0.034605 22.641 1 0.5548 0.70022 NaN 1 Median 0.5548 0.70022 NaN 1 0 Median NaN NaN NaN 0 0 Median 11487000 7089900 4397200 11487000 7089900 4397200 0 0 0 5055 1015 5170 18343 27717 27717 1 HNEETGDNVGPLIIK WRSKKFPFCDGAHTKHNEETGDNVGPLIIK HNEETGDNVGPLIIKKKET___________ K H N I K K 0 0 2 1 0 0 2 2 1 2 1 1 0 0 1 0 1 0 0 1 0 0 15 0 1634.8264 A0A024QZN7;Q9NZ45 A0A024QZN7 90 104 C10orf70;CISD1 CDGSH iron-sulfur domain-containing protein 1 yes no 2 5.3123E-109 255.24 3 1 0.65234 0.86701 69.338 2 Median 0.41417 0.531 NaN 1 0 Median 1.0275 1.4156 NaN 1 0 Median 11494000 7404500 4089900 7399700 5675200 1724500 4094700 1729300 2365400 5056 17 5171 18344;18345;18346;18347 27718;27719;27720;27721;27722 27719 5 HNEFDFISGTR YNKAKKAMDFYDPARHNEFDFISGTRMRKL DPARHNEFDFISGTRMRKLAREGENPPDGF R H N T R M 0 1 1 1 0 0 1 1 1 1 0 0 0 2 0 1 1 0 0 0 0 0 11 0 1321.6051 Q5TB52;B4DWB5;O95340;Q9UIR2 Q5TB52 570 580 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes no 2 0.00046401 121.61 1 1 0.41875 0.5722 NaN 1 Median 0.41875 0.5722 NaN 1 0 Median NaN NaN NaN 0 0 Median 17188000 4513000 12675000 7890200 4513000 3377300 9297800 0 9297800 5057 865 5172 18348;18349 27723;27724;27725 27724 3 HNKPEVEVR AALCLENFSSQVVERHNKPEVEVRSSKELL SQVVERHNKPEVEVRSSKELLLQPVTISRN R H N V R S 0 1 1 0 0 0 2 0 1 0 0 1 0 0 1 0 0 0 0 2 0 0 9 1 1106.5833 F8WDD7;F8WCF6;A0A0A6YYG9;P59998;Q9H7Z5;H7C0A3;F8WE39 F8WDD7 33 41 ARPC4;ARPC4-TTLL3 Actin-related protein 2/3 complex subunit 4 yes no 3 0.003111 64.654 1 1.1662 1.5072 NaN 1 Median 1.1662 1.5072 NaN 1 0 Median NaN NaN NaN 0 0 Median 8945800 3865900 5079900 8945800 3865900 5079900 0 0 0 5058 407 5173 18350 27726 27726 1 HNLEIIK FLMKHVFHPKRAVFRHNLEIIKTLVECWKD HPKRAVFRHNLEIIKTLVECWKDCLSIPYR R H N I K T 0 0 1 0 0 0 1 0 1 2 1 1 0 0 0 0 0 0 0 0 0 0 7 0 865.50215 P78527 P78527 2233 2239 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.038304 55.676 1 0.69321 1.0244 NaN 1 Median NaN NaN NaN 0 0 Median 0.69321 1.0244 NaN 1 0 Median 6564500 3927200 2637300 0 0 0 6564500 3927200 2637300 5059 1427 5174 18351 27727 27727 1 HNNLDLVIIR ANVVHVKSLPGYMTRHNNLDLVIIREQTEG GYMTRHNNLDLVIIREQTEGEYSSLEHESA R H N I R E 0 1 2 1 0 0 0 0 1 2 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1205.6881 A0A087X2E5;A0A087WZN1;O43837;L0R875 A0A087X2E5 155 164 IDH3B Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 2 0.00063865 82.287 1 0.33809 0.4579 NaN 1 Median 0.33809 0.4579 NaN 1 0 Median NaN NaN NaN 0 0 Median 8589000 6773700 1815200 8589000 6773700 1815200 0 0 0 5060 368 5175 18352 27728 27728 1 HNNQQALSHSIEEGLK EYEAHQERVLARINKHNNQQALSHSIEEGL NNQQALSHSIEEGLKIQAMNRLQRGKKQQI K H N L K I 1 0 2 0 0 2 2 1 2 1 2 1 0 0 0 2 0 0 0 0 0 0 16 0 1803.8864 X6RFN3;Q99496 X6RFN3 134 149 RNF2 E3 ubiquitin-protein ligase RING2 yes no 3 2.0366E-23 160.63 3 0.94438 1.1881 3.6483 2 Median 0.94438 1.1881 3.6483 2 0 Median NaN NaN NaN 0 0 Median 21383000 10554000 10829000 21383000 10554000 10829000 0 0 0 5061 1703 5176 18353;18354;18355 27729;27730;27731;27732;27733;27734 27729 6 HNTAVSQLTK KMDVAQSELDIYLSRHNTAVSQLTKAKEAL IYLSRHNTAVSQLTKAKEALIAASETLKER R H N T K A 1 0 1 0 0 1 0 0 1 0 1 1 0 0 0 1 2 0 0 1 0 0 10 0 1097.5829 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 513 522 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.1605E-45 211.86 4 2 0.70406 0.93309 3.039 4 Median 0.70458 0.92288 1.5644 3 0 Median 0.62535 0.97968 NaN 1 0 Median 578160000 275450000 302710000 463520000 225800000 237720000 114640000 49646000 64995000 5062 1760 5177 18356;18357;18358;18359;18360;18361 27735;27736;27737;27738;27739;27740;27741;27742;27743;27744;27745 27741 11 HNVEVLGILSDDVETDTVAPGENLK GSICKGQQLVMMPNKHNVEVLGILSDDVET DDVETDTVAPGENLKIRLKGIEEEEILPGF K H N L K I 1 0 2 3 0 0 3 2 1 1 3 1 0 0 1 1 2 0 0 4 0 0 25 0 2663.329 H3BR35;Q7KZX8;B2RCT6;A8K2W7;P15170 H3BR35 345 369 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 3 1.7987E-11 101.86 3 0.51326 0.66836 NaN 1 Median 0.51326 0.66836 NaN 1 0 Median NaN NaN NaN 0 0 Median 42373000 26282000 16091000 42373000 26282000 16091000 0 0 0 5063 586 5178 18362;18363;18364 27746;27747;27748;27749 27748 4 HNYECLVYVQLPFMEDLR KRANPQVGVAFPHIKHNYECLVYVQLPFME ECLVYVQLPFMEDLRQYMFSSLKNSKKYAP K H N L R Q 0 1 1 1 1 1 2 0 1 0 3 0 1 1 1 0 0 0 2 2 0 0 18 0 2325.0922 P13010;Q53T09 P13010 414 431 XRCC5 X-ray repair cross-complementing protein 5 yes no 3 0.0021183 72.21 2 0.5941 0.80302 NaN 1 Median 0.5941 0.80302 NaN 1 0 Median NaN NaN NaN 0 0 Median 4308700 2639400 1669300 4308700 2639400 1669300 0 0 0 5064 1262 5179 18365;18366 27750;27751;27752 27752 2 HNYYESFSLSPAAVADNVER RSARPELKDSLDWTRHNYYESFSLSPAAVA SFSLSPAAVADNVERADALQLSVEEFVERY R H N E R A 3 1 2 1 0 0 2 0 1 0 1 0 0 1 1 3 0 0 2 2 0 0 20 0 2268.0447 B2WTI3;B2WTI4;K7EJU9;A0A0S2PZM4;Q6NYC1 B2WTI3 29 48 JMJD6 Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 yes no 3 0.00035617 67.655 1 0.33569 0.47399 NaN 1 Median 0.33569 0.47399 NaN 1 0 Median NaN NaN NaN 0 0 Median 1443300 978660 464660 1443300 978660 464660 0 0 0 5065 446 5180 18367 27753 27753 1 HPAKPDPSGECNPDLR TKTPSSDVLVFDYTKHPAKPDPSGECNPDL PAKPDPSGECNPDLRLRGHQKEGYGLSWNS K H P L R L 1 1 1 2 1 0 1 1 1 0 1 1 0 0 4 1 0 0 0 0 0 0 16 1 1788.8213 Q6FHQ0;Q16576;E9PC52;Q5JP01 Q6FHQ0 156 171 RBBP7 Histone-binding protein RBBP7 yes no 2;3 6.4406E-33 169.15 8 2 0.73354 0.96519 19.148 10 Median 0.71866 0.94665 6.0399 8 0 Median 0.97181 1.4985 4.3474 2 0 Median 502320000 293230000 209080000 485100000 284860000 200250000 17216000 8379200 8836400 5066 1521 5181 18368;18369;18370;18371;18372;18373;18374;18375;18376;18377 27754;27755;27756;27757;27758;27759;27760;27761;27762;27763;27764;27765;27766;27767;27768;27769;27770;27771 27760 18 HPDADSLYVEK SRLDIRVGKIITVEKHPDADSLYVEKIDVG TVEKHPDADSLYVEKIDVGEAEPRTVVSGL K H P E K I 1 0 0 2 0 0 1 0 1 0 1 1 0 0 1 1 0 0 1 1 0 0 11 0 1272.5986 A0A0S2Z4R1;P54577 A0A0S2Z4R1 381 391 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes no 2 0.0026328 102.06 1 0.47622 0.60462 NaN 1 Median 0.47622 0.60462 NaN 1 0 Median NaN NaN NaN 0 0 Median 4043100 2800400 1242700 4043100 2800400 1242700 0 0 0 5067 468 5182 18378 27772;27773 27772 2 HPDASVNFSEFSK YAFFVQTCREEHKKKHPDASVNFSEFSKKC KKHPDASVNFSEFSKKCSERWKTMSAKEKG K H P S K K 1 0 1 1 0 0 1 0 1 0 0 1 0 2 1 3 0 0 0 1 0 0 13 0 1463.6681 Q5T7C4;B7Z965;Q59GW1;A0A024RDR0;P09429;Q9NYD7;Q75MM1 Q5T7C4 31 43 HMGB1;HMG1;WUGSC:H_NH0244E06.1 High mobility group protein B1 yes no 2 0.0035212 48.998 1 0.56159 0.82801 NaN 1 Median NaN NaN NaN 0 0 Median 0.56159 0.82801 NaN 1 0 Median 7209200 4527100 2682100 0 0 0 7209200 4527100 2682100 5068 322 5183 18379 27774 27774 1 HPDSSVNFAEFSK YAFFVQTCREEHKKKHPDSSVNFAEFSKKC KKHPDSSVNFAEFSKKCSERWKTMSAKEKS K H P S K K 1 0 1 1 0 0 1 0 1 0 0 1 0 2 1 3 0 0 0 1 0 0 13 0 1463.6681 D6R9A6;Q5U071;P26583 D6R9A6 31 43 HMGB2 High mobility group protein B2 yes no 2 0.0039774 47.559 1 1.5827 2.0084 NaN 1 Median 1.5827 2.0084 NaN 1 0 Median NaN NaN NaN 0 0 Median 7071400 2517800 4553500 7071400 2517800 4553500 0 0 0 5069 988 5184 18380 27775 27775 1 HPDVEVDGFSELR WYHFSCFWKVGHSIRHPDVEVDGFSELRWD IRHPDVEVDGFSELRWDDQQKVKKTAEAGG R H P L R W 0 1 0 2 0 0 2 1 1 0 1 0 0 1 1 1 0 0 0 2 0 0 13 0 1498.7052 A0A024R3T8;P09874;B4E0E1;B2R5W3;Q05D33;Q6PJL0;Q5VX84;Q5VX85 A0A024R3T8 66 78 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2;3 1.4489E-08 105.86 5 2 1.0366 1.408 46.618 7 Median 1.0413 1.4225 3.3512 5 0 Median 0.34047 0.55376 0.31758 2 0 Median 520470000 291250000 229220000 375870000 186110000 189760000 144600000 105140000 39460000 5070 107 5185 18381;18382;18383;18384;18385;18386;18387 27776;27777;27778;27779;27780;27781;27782;27783;27784;27785;27786;27787;27788;27789;27790;27791;27792;27793 27784 18 HPELFEALGIAQPK KQIKEIKEVIELPVKHPELFEALGIAQPKG KHPELFEALGIAQPKGVLLYGPPGTGKTLL K H P P K G 2 0 0 0 0 1 2 1 1 1 2 1 0 1 2 0 0 0 0 0 0 0 14 0 1548.83 Q59GS3;A0A140VJS3;P62195;J3QLH6;J3KRP2;J3QSA9;J3QRW1;J3QQM1;J3QRR3;J3QSE0 Q59GS3 167 180 PSMC5 26S protease regulatory subunit 8 yes no 2 0.0065594 102.52 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1771800 1771800 0 1771800 1771800 0 0 0 0 5071 503 5186 18388 27794 27794 1 HPELNISEEGITK LKVRPDEIMRDYIQKHPELNISEEGITKST QKHPELNISEEGITKSTLTKAERQLKDKFD K H P T K S 0 0 1 0 0 0 3 1 1 2 1 1 0 0 1 1 1 0 0 0 0 0 13 0 1465.7413 E9PKP7;P17480;A8K962;B4DNQ1;O00164;B4DLB0;Q05BZ1 E9PKP7 230 242 UBTF Nucleolar transcription factor 1 yes no 2 1.7105E-52 247.13 4 2 0.85461 1.1642 6.8793 5 Median 0.85944 1.1181 3.0839 3 0 Median 0.79651 1.2598 4.2484 2 0 Median 490410000 246290000 244120000 252670000 120400000 132270000 237740000 125890000 111850000 5072 1039 5187 18389;18390;18391;18392;18393;18394 27795;27796;27797;27798;27799;27800;27801;27802 27795 8 HPENYDLATLK SAVVVQGLPEGVAFKHPENYDLATLKWILE VAFKHPENYDLATLKWILENKAGISFIIKR K H P L K W 1 0 1 1 0 0 1 0 1 0 2 1 0 0 1 0 1 0 1 0 0 0 11 0 1299.6459 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;X5D7Q9;A0A0A0VEB4 X5D2J9 161 171 GTF2I;GTF2I-RARA General transcription factor II-I yes no 2 0.002143 105.4 2 1 1.3747 1.7272 69.659 3 Median 0.85048 1.1012 63.648 2 0 Median 1.9691 2.7657 NaN 1 0 Median 11285000 5127900 6157100 7106400 3566200 3540200 4178600 1561600 2616900 5073 651 5188 18395;18396;18397 27803;27804;27805 27804 3 HPFSFPLENQAR FFVTKKPTSQIPETKHPFSFPLENQAREAV ETKHPFSFPLENQAREAVSSAFFSLLQTLS K H P A R E 1 1 1 0 0 1 1 0 1 0 1 0 0 2 2 1 0 0 0 0 0 0 12 0 1441.7102 Q9BQG0;I3L1L3;I3L2H8 Q9BQG0 499 510 MYBBP1A Myb-binding protein 1A yes no 2;3 0.0010301 93.839 6 0.73054 0.97766 12.643 4 Median 0.73054 0.97766 12.643 4 0 Median NaN NaN NaN 0 0 Median 58165000 33374000 24791000 58165000 33374000 24791000 0 0 0 5074 1708 5189 18398;18399;18400;18401;18402;18403 27806;27807;27808;27809;27810;27811;27812 27811 7 HPGSFDVVHVK GANLGRIGVITNRERHPGSFDVVHVKDANG NRERHPGSFDVVHVKDANGNSFATRLSNIF R H P V K D 0 0 0 1 0 0 0 1 2 0 0 1 0 1 1 1 0 0 0 3 0 0 11 0 1220.6302 B2R491;P62701;Q96IR1;Q53HV1;C9JEH7;A4FU11;Q496E4;P22090 B2R491 201 211 RPS4X;RPS4Y1 40S ribosomal protein S4;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1 yes no 3 2.1687E-10 152.54 4 2 0.71012 0.91806 20.935 6 Median 0.79614 1.0226 11.736 4 0 Median 0.45536 0.68376 5.8967 2 0 Median 308290000 168600000 139690000 285250000 153120000 132130000 23041000 15482000 7559100 5075 681 5190 18404;18405;18406;18407;18408;18409 27813;27814;27815;27816;27817;27818;27819;27820 27814 8 HPHDIIDDINSGAVECPAS ILGTAQSVGCNVDGRHPHDIIDDINSGAVE IIDDINSGAVECPAS_______________ R H P A S - 2 0 1 3 1 0 1 1 2 3 0 0 0 0 2 2 0 0 0 1 0 0 19 0 2045.9113 P30050;Q59FI9 P30050 147 165 RPL12 60S ribosomal protein L12 yes no 2;3 1.4874E-09 123.63 3 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 310750000 0 0 221000000 0 0 89757000 0 0 5076 1307 5191 18410;18411;18412;18413;18414;18415 27821;27822;27823;27824;27825;27826;27827 27824 7 HPHVLPYR QMVQKITLDCIMTYKHPHVLPYRENLQRLL DCIMTYKHPHVLPYRENLQRLLEDRSFKEE K H P Y R E 0 1 0 0 0 0 0 0 2 0 1 0 0 0 2 0 0 0 1 1 0 0 8 0 1017.5508 O75691 O75691 965 972 UTP20 Small subunit processome component 20 homolog yes yes 3 0.018874 37.558 1 1.4029 1.8551 NaN 1 Median 1.4029 1.8551 NaN 1 0 Median NaN NaN NaN 0 0 Median 10451000 4036600 6414900 10451000 4036600 6414900 0 0 0 5077 1207 5192 18416 27828 27828 1 HPPAPAEPSSDLASK EWLQDLKEKGPTLLKHPPAPAEPSSDLASK HPPAPAEPSSDLASKLREAEETQSTLQAEC K H P S K L 3 0 0 1 0 0 1 0 1 0 1 1 0 0 4 3 0 0 0 0 0 0 15 0 1502.7365 A0A0A0MRV0;A7BI36;Q9P2E9;F8W7S5;A1A5C4;A0A087WVV2;A1A5C5;B3KSG1;A0A087WU26 A0A0A0MRV0 1099 1113 RRBP1 Ribosome-binding protein 1 yes no 2 1.5433E-05 110.98 1 0.66257 0.84046 NaN 1 Median 0.66257 0.84046 NaN 1 0 Median NaN NaN NaN 0 0 Median 3771600 1737000 2034600 3771600 1737000 2034600 0 0 0 5078 390 5193 18417 27829 27829 1 HPQLLYESK NGEEVAVKLESQKARHPQLLYESKLYKILQ ESQKARHPQLLYESKLYKILQGGVGIPHIR R H P S K L 0 0 0 0 0 1 1 0 1 0 2 1 0 0 1 1 0 0 1 0 0 0 9 0 1113.5819 Q05DL3;V9HW00;P48729;Q6PJ06;Q8N752;E5RG27;D6RGE5 Q05DL3 54 62 CSNK1A1;HEL-S-77p;CSNK1A1L Casein kinase I isoform alpha;Casein kinase I isoform alpha-like yes no 2 0.013888 57.59 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5079 1349 5194 18418 27830 27830 1 HPQPFLR IKLNQWCNVVRWEFKHPQPFLRTREFLWQE NVVRWEFKHPQPFLRTREFLWQEGHSAFAT K H P L R T 0 1 0 0 0 1 0 0 1 0 1 0 0 1 2 0 0 0 0 0 0 0 7 0 893.48717 P07814;B4DP50 P07814 1157 1163 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.050857 50.539 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5080 1242 5195 18419 27831 27831 1 HPSAVTACNLDLENLVTDSNR LRYAAVRTLNKVAMKHPSAVTACNLDLENL ACNLDLENLVTDSNRSIATLAITTLLKTGS K H P N R S 2 1 3 2 1 0 1 0 1 0 3 0 0 0 1 2 2 0 0 2 0 0 21 0 2325.1019 Q9Y678;B3KW21;Q8WUI6 Q9Y678 318 338 COPG1;COPG Coatomer subunit gamma-1 yes no 3 3.9648E-05 89.831 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2489000 2489000 0 2489000 2489000 0 0 0 0 5081 1832 5196 18420 27832 27832 1 HPSKPDPSGECNPDLR TKTPSSDVLVFDYTKHPSKPDPSGECNPDL PSKPDPSGECNPDLRLRGHQKEGYGLSWNP K H P L R L 0 1 1 2 1 0 1 1 1 0 1 1 0 0 4 2 0 0 0 0 0 0 16 1 1804.8162 Q09028 Q09028 157 172 RBBP4 Histone-binding protein RBBP4 yes yes 2;3 3.284E-30 157.33 9 2 0.68548 0.90897 34.95 11 Median 0.68164 0.90721 34.053 9 0 Median 0.85971 1.2785 0.94641 2 0 Median 257870000 153400000 104480000 249270000 148700000 100570000 8601800 4694000 3907900 5082 1452 5197 18421;18422;18423;18424;18425;18426;18427;18428;18429;18430;18431 27833;27834;27835;27836;27837;27838;27839;27840;27841;27842;27843;27844;27845;27846;27847 27841 14 HPSLQVLICK CGQQVNHFQKDSIYRHPSLQVLICKNCFKY DSIYRHPSLQVLICKNCFKYYMSDDISRDS R H P C K N 0 0 0 0 1 1 0 0 1 1 2 1 0 0 1 1 0 0 0 1 0 0 10 0 1193.6591 A4LAA3;P46100;A0A096LNL9;A0A096LNW1;A0A096LNN3;A0A096LNL6;A0A067XLH7;A0A096LNL7 A4LAA3 189 198 ATRX Transcriptional regulator ATRX yes no 2 0.0065685 70.256 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3255400 0 3255400 3255400 0 3255400 0 0 0 5083 556 5198 18432 27848 27848 1 HPSSPECLVSAQK ERLDFVCSFLQKNRKHPSSPECLVSAQKVL RKHPSSPECLVSAQKVLEGSELELAKMTML K H P Q K V 1 0 0 0 1 1 1 0 1 0 1 1 0 0 2 3 0 0 0 1 0 0 13 0 1438.6875 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;F5H0Z7;F5H763;Q86XH4;G1UI36;F5H2F3;F5H3L6;F5GZW1;F5H1L0;F8W6T3;A8K394;Q4LE64;Q14980 Q4LE64 74 86 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 3.0641E-20 187.16 3 0.84294 1.0861 9.3814 3 Plateau 0.84294 1.0861 9.3814 3 0 Plateau NaN NaN NaN 0 0 Median 11113000 6304500 4808400 11113000 6304500 4808400 0 0 0 5084 148;1499;590 5199 18433;18434;18435 27849;27850;27851;27852;27853;27854 27852 6 HPSVNENFCNEK DIVFPALDILRLSIKHPSVNENFCNEKEGA SIKHPSVNENFCNEKEGAQFSSHLINLLNP K H P E K E 0 0 3 0 1 0 2 0 1 0 0 1 0 1 1 1 0 0 0 1 0 0 12 0 1473.6307 H0YBW4;Q9Y263 H0YBW4 241 252 PLAA Phospholipase A-2-activating protein yes no 2 0.013482 94.363 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5085 1097 5200 18436 27855 27855 1 HPVLIFITEK DEEVIKWTKFFVVFRHPVLIFITEKHGNYF FVVFRHPVLIFITEKHGNYFAYVQMFNSRI R H P E K H 0 0 0 0 0 0 1 0 1 2 1 1 0 1 1 0 1 0 0 1 0 0 10 0 1195.6965 Q9H8H0;J3QR28 Q9H8H0 164 173 NOL11 Nucleolar protein 11 yes no 2 7.157E-07 146.69 3 1 0.85187 1.0945 7.6116 3 Median 0.85187 1.0945 7.6116 3 0 Median NaN NaN NaN 0 0 Median 51763000 25707000 26055000 49554000 25707000 23846000 2209000 0 2209000 5086 1743 5201 18437;18438;18439;18440 27856;27857;27858;27859;27860 27857 5 HPYLPINSAAIK RRLCREILRPWHAARHPYLPINSAAIKAEC AARHPYLPINSAAIKAECTARLPEASQSPL R H P I K A 2 0 1 0 0 0 0 0 1 2 1 1 0 0 2 1 0 0 1 0 0 0 12 0 1322.7347 E7ESY4;Q13330;A0A024R6P5;Q59FW1;H0Y4T7;Q9BRL8;F8W9Y9 E7ESY4 498 509 MTA1 Metastasis-associated protein MTA1 yes no 2 0.0015401 102.06 2 2 0.96496 1.3375 25.184 4 Median 0.85522 1.0758 0.86825 2 0 Median 1.1107 1.6637 0.92943 2 0 Median 35006000 17183000 17824000 14497000 7892100 6605300 20509000 9290400 11219000 5087 1014 5202 18441;18442;18443;18444 27861;27862;27863;27864;27865;27866 27861 6 HQACLLLQK LPILVQHITGPVRPRHQACLLLQKTLSMRE GPVRPRHQACLLLQKTLSMREVRSCFEDPE R H Q Q K T 1 0 0 0 1 2 0 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1109.6015 Q9BQG0;I3L1L3;B4DE42 Q9BQG0 1028 1036 MYBBP1A Myb-binding protein 1A yes no 2 7.2843E-05 107.9 1 2 0.40472 0.56781 NaN 1 Median NaN NaN NaN 0 0 Median 0.40472 0.56781 NaN 1 0 Median 15827000 5157200 10670000 9217600 0 9217600 6609300 5157200 1452100 5088 1708 5203 18445;18446;18447 27867;27868;27869 27867 3 HQAFEAELHANADR ESYKDPTNIQSKHQKHQAFEAELHANADRI KHQAFEAELHANADRIRGVIDMGNSLIERG K H Q D R I 4 1 1 1 0 1 2 0 2 0 1 0 0 1 0 0 0 0 0 0 0 0 14 0 1607.7441 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16 Q13813 1592 1605 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2;3 2.3546E-18 128.06 6 0.78183 1.0652 6.7786 5 Median 0.78183 1.0652 6.7786 5 0 Median NaN NaN NaN 0 0 Median 165580000 94583000 70994000 165580000 94583000 70994000 0 0 0 5089 1476 5204 18448;18449;18450;18451;18452;18453 27870;27871;27872;27873;27874;27875;27876;27877;27878;27879 27877 10 HQAFEAELSANQSR EAYKDPSNLQGKVQKHQAFEAELSANQSRI KHQAFEAELSANQSRIDALEKAGQKLIDVN K H Q S R I 3 1 1 0 0 2 2 0 1 0 1 0 0 1 0 2 0 0 0 0 0 0 14 0 1586.7437 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 614 627 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2;3 1.187E-20 173.06 5 0.84499 1.1308 17.458 3 Plateau 0.84499 1.1308 17.458 3 0 Plateau NaN NaN NaN 0 0 Median 46333000 22651000 23683000 46333000 22651000 23683000 0 0 0 5090 1476 5205 18454;18455;18456;18457;18458 27880;27881;27882;27883;27884;27885 27880 6 HQAFEAEVQANSGAIVK ENYKDPTNLQGKLQKHQAFEAEVQANSGAI AFEAEVQANSGAIVKLDETGNLMISEGHFA K H Q V K L 4 0 1 0 0 2 2 1 1 1 0 1 0 1 0 1 0 0 0 2 0 0 17 0 1797.901 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8;A0A0D9SFF6 Q13813 85 101 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2;3 1.4508E-25 109.35 5 0.76233 0.97887 16.02 5 Median 0.76233 0.97887 16.02 5 0 Median NaN NaN NaN 0 0 Median 61728000 34988000 26740000 61728000 34988000 26740000 0 0 0 5091 1476 5206 18459;18460;18461;18462;18463 27886;27887;27888;27889;27890;27891;27892 27891 7 HQAILLGNAEEQK RVREIMTFLVNDVLKHQAILLGNAEEQKKK LKHQAILLGNAEEQKKKKRSLWDTIKKKKI K H Q Q K K 2 0 1 0 0 2 2 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0 13 0 1449.7576 Q8IZT6;B3KWI2;Q4G1H2;Q4G1H0;A0A087WV76 Q8IZT6 132 144 ASPM Abnormal spindle-like microcephaly-associated protein yes no 2 1.8506E-05 129.34 2 0.93427 1.2048 50.51 2 Median 0.93427 1.2048 50.51 2 0 Median NaN NaN NaN 0 0 Median 4127700 2022200 2105400 4127700 2022200 2105400 0 0 0 5092 1631 5207 18464;18465 27893;27894;27895;27896;27897 27895 5 HQALQAEIAGHEPR NRGKDLIGVQNLLKKHQALQAEIAGHEPRI KHQALQAEIAGHEPRIKAVTQKGNAMVEEG K H Q P R I 3 1 0 0 0 2 2 1 2 1 1 0 0 0 1 0 0 0 0 0 0 0 14 0 1555.7855 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 826 839 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 3 0.0030156 70.197 3 0.72938 1.0234 55.206 3 Median 0.72938 1.0234 55.206 3 0 Median NaN NaN NaN 0 0 Median 51332000 22428000 28904000 51332000 22428000 28904000 0 0 0 5093 1476 5208 18466;18467;18468 27898;27899;27900;27901 27900 4 HQAVQLPR GQRLYGKVLRATLSKHQAVQLPREGQEDQG LRATLSKHQAVQLPREGQEDQGLTKDFSNS K H Q P R E 1 1 0 0 0 2 0 0 1 0 1 0 0 0 1 0 0 0 0 1 0 0 8 0 947.5301 A0A024R163;O95758 A0A024R163 432 439 ROD1;PTBP3 Polypyrimidine tract-binding protein 3 yes no 2 0.014054 60.648 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5094 52 5209 18469 27902 27902 1 HQCTCIDGAVGCIPLCPQELSLPNLGCPNPR SRIYQNGESFQPNCKHQCTCIDGAVGCIPL PQELSLPNLGCPNPRLVKVTGQCCEEWVCD K H Q P R L 1 1 2 1 5 2 1 3 1 2 4 0 0 0 5 1 1 0 0 1 0 0 31 0 3532.6142 Q6FI18;O00622;B4DI61;Q53FA4;Q9UID7 Q6FI18 119 149 CYR61 Protein CYR61 yes no 3 7.5506E-22 117.57 3 1.4137 1.9196 11.217 3 Median 1.4137 1.9196 11.217 3 0 Median NaN NaN NaN 0 0 Median 97818000 40135000 57683000 97818000 40135000 57683000 0 0 0 5095 1168 5210 18470;18471;18472 27903;27904;27905;27906;27907;27908;27909;27910;27911 27906 9 HQDQNSVACIEEK PSMHEPLQNEVFASRHQDQNSVACIEEKCY SRHQDQNSVACIEEKCYVLTFAEYCRFCAM R H Q E K C 1 0 1 1 1 2 2 0 1 1 0 1 0 0 0 1 0 0 0 1 0 0 13 0 1556.6889 A0A024R9K2;Q8TBE0 A0A024R9K2 695 707 BAHD1 Bromo adjacent homology domain-containing 1 protein yes no 2 1.5307E-16 172.09 3 0.69803 0.88832 0.75262 2 Median 0.69803 0.88832 0.75262 2 0 Median NaN NaN NaN 0 0 Median 5638300 3537900 2100400 5638300 3537900 2100400 0 0 0 5096 224 5211 18473;18474;18475 27912;27913;27914;27915 27913 4 HQEGEIFDTEK LTDAYFKKKKLRKPRHQEGEIFDTEKEKYE RKPRHQEGEIFDTEKEKYEITEQRKIDQKA R H Q E K E 0 0 0 1 0 1 3 1 1 1 0 1 0 1 0 0 1 0 0 0 0 0 11 0 1331.5994 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3 Q8TBK5 227 237 RPL6 60S ribosomal protein L6 yes no 2 7.9037E-70 261.52 6 3 0.74227 0.99297 7.5076 7 Median 0.75923 0.99648 7.2841 5 0 Median 0.58688 0.93444 1.3147 2 0 Median 2562100000 1450200000 1111900000 2412900000 1354800000 1058100000 149150000 95358000 53793000 5097 277 5212 18476;18477;18478;18479;18480;18481;18482;18483;18484 27916;27917;27918;27919;27920;27921;27922;27923;27924;27925;27926;27927;27928;27929;27930;27931;27932;27933;27934;27935;27936;27937;27938 27916 23 HQELFR RLRVQQAALRAARLRHQELFRLRGIKAQVA AALRAARLRHQELFRLRGIKAQVALRLAEL R H Q F R L 0 1 0 0 0 1 1 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 6 0 828.42424 Q7L4X7;Q96CS0;Q53YP0;B4E1N4;Q9NZM5;Q9H7J4 Q7L4X7 361 366 GLTSCR2;FLJ00085 Glioma tumor suppressor candidate region gene 2 protein yes no 2 0.036565 88.643 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10203000 10203000 0 10203000 10203000 0 0 0 0 5098 887 5213 18485 27939 27939 1 HQEYLNSILQHAK EKQQKIEQERKRRQKHQEYLNSILQHAKDF QKHQEYLNSILQHAKDFKEYHRSVTGKIQK K H Q A K D 1 0 1 0 0 2 1 0 2 1 2 1 0 0 0 1 0 0 1 0 0 0 13 0 1579.8107 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;Q59FZ6;A5D6X0;P51531;A0A0U1RQZ9;F6VDE0;B4DK35 A7E2E1 472 484 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 3 1.1298E-08 125.53 4 0.76711 0.9498 10.613 3 Median 0.76711 0.9498 10.613 3 0 Median NaN NaN NaN 0 0 Median 62740000 32185000 30555000 62740000 32185000 30555000 0 0 0 5099 403;1362 5214 18486;18487;18488;18489 27940;27941;27942;27943;27944;27945 27942 6 HQGVMVGMGQK DAPRAVFPSIVGRPRHQGVMVGMGQKDSYV GRPRHQGVMVGMGQKDSYVGDEAQSKRGIL R H Q Q K D 0 0 0 0 0 2 0 3 1 0 0 1 2 0 0 0 0 0 0 2 0 0 11 0 1170.5638 B7Z6P1;P68133;P68032;A8K3K1;D2JYH4;P63267;P62736;B3KW67;Q13707;Q7Z7J6;A6NL76;C9JUM1;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B3KUD3;G5E9R0;E7EVS6;C9JZR7;A1E282;C9JTX5;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65;Q562R1 Q53GK6 40 50 ACTA1;ACTC1;ACTA2;ACTG2;ACTB;PS1TP5BP1;ACTG1;ACTBL2 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Beta-actin-like protein 2 no no 2 3.7542E-23 174.02 5 1 0.49577 0.6322 100.3 5 Median 0.48984 0.61597 4.4481 4 0 Median 4.2084 5.8259 NaN 1 0 Median 227790000 151780000 76012000 223570000 150870000 72695000 4229700 912320 3317400 5100 1388;1420;914;1547 5215;5216 18490;18491;18492;18493;18494;18495 27946;27947;27948;27949;27950;27951;27952;27953;27954;27955 27950 314 10 HQILEQAVEDYAETVHQLSK EKAKDEQSAVSMLKKHQILEQAVEDYAETV QAVEDYAETVHQLSKTSRALVADSHPESER K H Q S K T 2 0 0 1 0 3 3 0 2 1 2 1 0 0 0 1 1 0 1 2 0 0 20 0 2337.1601 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24 B2ZZ89 1634 1653 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 2.5937E-20 150.23 3 0.82591 1.0461 3.3841 2 Median 0.82591 1.0461 3.3841 2 0 Median NaN NaN NaN 0 0 Median 60671000 31254000 29417000 60671000 31254000 29417000 0 0 0 5101 346 5217 18496;18497;18498 27956;27957;27958;27959;27960;27961 27958 6 HQLASISSPVVTSLLINLGSPVK YVGCAMLSSQKTQCKHQLASISSPVVTSLL PVVTSLLINLGSPVKEVRRAAIQCLQALSG K H Q V K E 1 0 1 0 0 1 0 1 1 2 4 1 0 0 2 5 1 0 0 3 0 0 23 0 2359.3475 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1 B2RWN5 910 932 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 1.5661E-66 162.65 4 0.81182 1.0324 4.8789 4 Median 0.81182 1.0324 4.8789 4 0 Median NaN NaN NaN 0 0 Median 183520000 102270000 81251000 183520000 102270000 81251000 0 0 0 5102 748 5218 18499;18500;18501;18502 27962;27963;27964;27965;27966;27967;27968 27967 7 HQLEEELR LETDRRGALKAQTWKHQLEEELRQQKEAAC LKAQTWKHQLEEELRQQKEAACFKARPNTV K H Q L R Q 0 1 0 0 0 1 3 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 1052.5251 Q643R0;Q9ULW0;B3KM90;Q96FC3 Q643R0 610 617 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 0.00014658 125.82 3 2 0.77493 1.057 10.937 5 Median 0.80035 1.1127 4.2684 3 0 Median 0.58432 0.91289 0.1796 2 0 Median 211970000 112960000 99007000 159380000 82746000 76639000 52582000 30214000 22368000 5103 1581 5219 18503;18504;18505;18506;18507 27969;27970;27971;27972;27973;27974;27975;27976 27976 8 HQLLEADISAHEDR DYGKDLASVNNLLKKHQLLEADISAHEDRL KHQLLEADISAHEDRLKDLNSQADSLMTSS K H Q D R L 2 1 0 2 0 1 2 0 2 1 2 0 0 0 0 1 0 0 0 0 0 0 14 0 1632.7856 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16 Q13813 1700 1713 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 3 0.009668 34.382 1 0.74518 0.99061 NaN 1 Median 0.74518 0.99061 NaN 1 0 Median NaN NaN NaN 0 0 Median 15955000 8549700 7405400 15955000 8549700 7405400 0 0 0 5104 1476 5220 18508 27977 27977 1 HQLNELGSESAK FGDDDEIPQELLLGKHQLNELGSESAKIKA LGKHQLNELGSESAKIKAMGIMDKLSTDKT K H Q A K I 1 0 1 0 0 1 2 1 1 0 2 1 0 0 0 2 0 0 0 0 0 0 12 0 1311.6419 Q6IEH8;Q6KC79 Q6IEH8 1236 1247 NIPBL Nipped-B-like protein yes no 2 5.5022E-26 205.12 2 0.39469 0.50974 10.354 2 Median 0.39469 0.50974 10.354 2 0 Median NaN NaN NaN 0 0 Median 8990500 4898100 4092400 8990500 4898100 4092400 0 0 0 5105 1586 5221 18509;18510 27978;27979;27980;27981 27979 4 HQNTEVVLYLAR SAVQMYENCLRKFYKHQNTEVVLYLARALF FYKHQNTEVVLYLARALFKCGKLQECKQTL K H Q A R A 1 1 1 0 0 1 1 0 1 0 2 0 0 0 0 0 1 0 1 2 0 0 12 0 1441.7678 A8K6X9;Q6PD62 A8K6X9 714 725 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2 4.2808E-32 212.28 4 1 0.73188 0.9792 4.2716 4 Median 0.73188 0.9792 4.2716 4 0 Median NaN NaN NaN 0 0 Median 78220000 42652000 35568000 75500000 42652000 32848000 2720600 0 2720600 5106 629 5222 18511;18512;18513;18514;18515 27982;27983;27984;27985;27986;27987;27988;27989;27990;27991 27984 10 HQNVQLPR GHKLHGKPIRITLSKHQNVQLPREGQEDQG IRITLSKHQNVQLPREGQEDQGLTKDYGNS K H Q P R E 0 1 1 0 0 2 0 0 1 0 1 0 0 0 1 0 0 0 0 1 0 0 8 0 990.53591 A6NLN1;A0A0U1RRM4;P26599;K7EK45;A0A0D9SF20;A0A087WUW5 A6NLN1 407 414 PTBP1 Polypyrimidine tract-binding protein 1 yes no 2 0.020753 58.194 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2568500 0 2568500 0 0 0 2568500 0 2568500 5107 489 5223 18516 27992 27992 1 HQPASASSTAASPAHPAK AAPFQTSQASASAPRHQPASASSTAASPAH ASASSTAASPAHPAKLRAQTTAQASTPGQP R H Q A K L 6 0 0 0 0 1 0 0 2 0 0 1 0 0 3 4 1 0 0 0 0 0 18 0 1714.8387 Q96L91 Q96L91 1536 1553 EP400 E1A-binding protein p400 yes yes 3 0.0037001 56.799 1 0.50433 0.65194 NaN 1 Median 0.50433 0.65194 NaN 1 0 Median NaN NaN NaN 0 0 Median 637080 382550 254520 637080 382550 254520 0 0 0 5108 1692 5224 18517 27993 27993 1 HQSFVLVGETGSGK PVWEYKDRFTDILVRHQSFVLVGETGSGKT RHQSFVLVGETGSGKTTQIPQWCVEYMRSL R H Q G K T 0 0 0 0 0 1 1 3 1 0 1 1 0 1 0 2 1 0 0 2 0 0 14 0 1444.731 O43143;B4E0S6 O43143 153 166 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2;3 5.6462E-41 216.88 5 3 0.73176 0.96658 26.118 8 Median 0.64714 0.82327 28.955 5 0 Median 0.8316 1.2572 18.051 3 0 Median 162720000 94280000 68437000 114630000 68456000 46170000 48091000 25825000 22267000 5109 1180 5225 18518;18519;18520;18521;18522;18523;18524;18525 27994;27995;27996;27997;27998;27999;28000;28001;28002;28003;28004;28005 27996 10 HQTLVLTLPTVAFLEDK NLIPAVGLNVHSMLKHQTLVLTLPTVAFLE TLVLTLPTVAFLEDKLLWQDSRYRPLYPFS K H Q D K L 1 0 0 1 0 1 1 0 1 0 4 1 0 1 1 0 3 0 0 2 0 0 17 0 1924.067 K7ES61;A0A024R7C5;Q9BYD3 K7ES61 256 272 MRPL4 39S ribosomal protein L4, mitochondrial yes no 2;3 1.3371E-10 136.6 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2213300 2213300 0 2213300 2213300 0 0 0 0 5110 174 5226 18526;18527 28006;28007 28007 2 HQVEQLSSSLK AQTLQQQEQASQGLRHQVEQLSSSLKQKEQ QGLRHQVEQLSSSLKQKEQQLKEVAEKQEA R H Q L K Q 0 0 0 0 0 2 1 0 1 0 2 1 0 0 0 3 0 0 0 1 0 0 11 0 1254.6568 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 551 561 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 1.587E-09 163.46 2 2 0.45008 0.61896 26.839 4 Median 0.637 0.79058 15.234 2 0 Median 0.34192 0.51267 7.2718 2 0 Median 51703000 32769000 18934000 31338000 17730000 13608000 20365000 15039000 5325600 5111 148;1499;590 5227 18528;18529;18530;18531 28008;28009;28010;28011;28012 28008 5 HQVIQTVHPVEK KGPISDALAHHLRERHQVIQTVHPVEKKLT RERHQVIQTVHPVEKKLTYKCIHCLGVYTS R H Q E K K 0 0 0 0 0 2 1 0 2 1 0 1 0 0 1 0 1 0 0 3 0 0 12 0 1413.7728 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 647 658 ADNP Activity-dependent neuroprotector homeobox protein yes no 2;3 5.8102E-20 184.34 7 2 0.73733 1.0256 32.589 8 Median 0.71374 0.90151 28.841 6 0 Median 0.90008 1.3487 26.35 2 0 Median 136490000 79540000 56945000 119550000 70606000 48941000 16939000 8934700 8004100 5112 729 5228 18532;18533;18534;18535;18536;18537;18538;18539;18540 28013;28014;28015;28016;28017;28018;28019;28020;28021;28022;28023;28024 28013 11 HQVSVEGTNQTDVK EKEVPPGSAIIHIKKHQVSVEGTNQTDVKA KHQVSVEGTNQTDVKAVGGPAKLLVVSLEE K H Q V K A 0 0 1 1 0 2 1 1 1 0 0 1 0 0 0 1 2 0 0 3 0 0 14 0 1540.7481 Q14676;B4DYH4 Q14676 541 554 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 2 0.0027782 45.357 1 2 0.63946 0.86419 8.2917 2 Median NaN NaN NaN 0 0 Median 0.63946 0.86419 8.2917 2 0 Median 6488000 3932400 2555600 0 0 0 6488000 3932400 2555600 5113 1491 5229 18541;18542;18543 28025;28026;28027;28028;28029 28026 5 HQYINEDEYEVNLK KEFEKFKFAIVMMGRHQYINEDEYEVNLKD RHQYINEDEYEVNLKDFEPQPGNMSHPRPW R H Q L K D 0 0 2 1 0 1 3 0 1 1 1 1 0 0 0 0 0 0 2 1 0 0 14 0 1792.8268 Q6U8A4;Q93009;B7ZAX6;B7Z855 Q6U8A4 1058 1071 USP7 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 7 yes no 2 1.3952E-40 213.99 3 0.5315 0.67545 14.128 3 Median 0.5315 0.67545 14.128 3 0 Median NaN NaN NaN 0 0 Median 21805000 13354000 8451700 21805000 13354000 8451700 0 0 0 5114 1600 5230 18544;18545;18546 28030;28031;28032;28033 28030 4 HRDFVAEPMGEK ______________________________ SQKHRDFVAEPMGEKPVGSLAGIGEVLGKK K H R E K P 1 1 0 1 0 0 2 1 1 0 0 1 1 1 1 0 0 0 0 1 0 0 12 1 1414.6663 A0A024R5H0;O75531;E9PJJ8 A0A024R5H0 7 18 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 2;3 0.0018902 107.97 9 1 0.99084 1.2917 11.841 10 Median 0.9942 1.3071 10.934 9 0 Median 0.66428 1.0519 NaN 1 0 Median 328770000 177180000 151590000 316040000 169900000 146140000 12729000 7284200 5444500 5115 143 5231;5232 18547;18548;18549;18550;18551;18552;18553;18554;18555;18556 28034;28035;28036;28037;28038;28039;28040;28041;28042;28043;28044;28045;28046 28041 72 13 HRDYETATLSDIK SIHEAWTDGKEAMLKHRDYETATLSDIKAL LKHRDYETATLSDIKALIRKHEAFESDLAA K H R I K A 1 1 0 2 0 0 1 0 1 1 1 1 0 0 0 1 2 0 1 0 0 0 13 1 1547.758 A0A0S2Z3G9;O43707;Q96BG6;B4E337 A0A0S2Z3G9 438 450 ACTN4 Alpha-actinin-4 yes no 3 0.045646 46.282 1 0.87513 1.1652 NaN 1 Median 0.87513 1.1652 NaN 1 0 Median NaN NaN NaN 0 0 Median 13624000 7591300 6032200 13624000 7591300 6032200 0 0 0 5116 451 5233 18557 28047 28047 1 HRELFLSR SKQPGVSEQQRHQLKHRELFLSRQFESLPA QQRHQLKHRELFLSRQFESLPATHIRGKCS K H R S R Q 0 2 0 0 0 0 1 0 1 0 2 0 0 1 0 1 0 0 0 0 0 0 8 1 1056.5829 A0A024R534;O94776;E7EQY4;E7EV10;Q9BTC8;E9PCS8;D6W5A2;Q53RX8;E7ESY4;Q13330;A0A024R6P5;Q86TR6 A0A024R534 85 92 MTA2;MTA3;tmp_locus_6;MTA1 Metastasis-associated protein MTA2;Metastasis-associated protein MTA3;Metastasis-associated protein MTA1 no no 3 2.0119E-17 169.44 3 0.72168 0.96446 15.947 3 Median 0.72168 0.96446 15.947 3 0 Median NaN NaN NaN 0 0 Median 123340000 71125000 52215000 123340000 71125000 52215000 0 0 0 5117 133;1014;1012 5234 18558;18559;18560 28048;28049;28050;28051;28052;28053 28051 6 HRELYLR MENQVLTPHVYWAQRHRELYLRVELSDVQN PHVYWAQRHRELYLRVELSDVQNPAISITE R H R L R V 0 2 0 0 0 0 1 0 1 0 2 0 0 0 0 0 0 0 1 0 0 0 7 1 985.54575 Q9P035;H3BS72 Q9P035 16 22 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes no 3 0.020698 45.718 1 0.58446 0.77733 NaN 1 Median 0.58446 0.77733 NaN 1 0 Median NaN NaN NaN 0 0 Median 9823400 5487200 4336200 9823400 5487200 4336200 0 0 0 5118 1775 5235 18561 28054 28054 1 HRFLEEFITPIVK LLINFIHHNWPSLLRHRFLEEFITPIVKVS LRHRFLEEFITPIVKVSKNKQEMAFYSLPE R H R V K V 0 1 0 0 0 0 2 0 1 2 1 1 0 2 1 0 1 0 0 1 0 0 13 1 1627.9086 P11388 P11388 567 579 TOP2A DNA topoisomerase 2-alpha yes yes 3 1.9944E-05 123.02 6 0.88739 1.1666 6.6207 4 Median 0.88739 1.1666 6.6207 4 0 Median NaN NaN NaN 0 0 Median 92518000 51128000 41390000 92518000 51128000 41390000 0 0 0 5119 1256 5236 18562;18563;18564;18565;18566;18567 28055;28056;28057;28058;28059;28060;28061;28062;28063;28064;28065;28066;28067 28059 13 HRPDLIDFDK TSWRDGMAFNALIHKHRPDLIDFDKLKKSN ALIHKHRPDLIDFDKLKKSNAHYNLQNAFN K H R D K L 0 1 0 3 0 0 0 0 1 1 1 1 0 1 1 0 0 0 0 0 0 0 10 1 1254.6357 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;F8W6C1;B2RMN7;A0A024R674;Q59FP5;P11277 B2ZZ89 215 224 SPTBN1;SPTB Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic yes no 3 0.0024318 46.844 1 0.86049 1.1327 NaN 1 Median 0.86049 1.1327 NaN 1 0 Median NaN NaN NaN 0 0 Median 20282000 11364000 8918600 20282000 11364000 8918600 0 0 0 5120 346 5237 18568 28068;28069 28069 2 HRPELIEYDK ISWKDGLAFNALIHRHRPELIEYDKLRKDD ALIHRHRPELIEYDKLRKDDPVTNLNNAFE R H R D K L 0 1 0 1 0 0 2 0 1 1 1 1 0 0 1 0 0 0 1 0 0 0 10 1 1298.6619 A0A0S2Z3G9;O43707;B4E337;B4DSX0;K7EJH8 A0A0S2Z3G9 205 214 ACTN4 Alpha-actinin-4 yes no 3 0.01371 32.254 1 0.99317 1.2916 NaN 1 Median 0.99317 1.2916 NaN 1 0 Median NaN NaN NaN 0 0 Median 19312000 8638600 10673000 19312000 8638600 10673000 0 0 0 5121 451 5238 18569 28070 28070 1 HRPSPPATPPPK KTRRLSPSASPPRRRHRPSPPATPPPKTRH RRRHRPSPPATPPPKTRHSPTPQQSNRTRK R H R P K T 1 1 0 0 0 0 0 0 1 0 0 1 0 0 6 1 1 0 0 0 0 0 12 1 1280.699 A0A0S2Z4W1;A9Z1X7;B7Z7U0;A0A0S2Z4Z6;Q8IYB3;M0R088;E9PCT1 A0A0S2Z4W1 399 410 SRRM1 Serine/arginine repetitive matrix protein 1 yes no 3 0.013879 82.85 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1014700 1014700 0 1014700 1014700 0 0 0 0 5122 471 5239 18570 28071 28071 1 HRQPPEYNPNDEEEEEVQLK LRKSAFDMFNFLASKHRQPPEYNPNDEEEE EYNPNDEEEEEVQLKSARRATSMDLPMPMR K H R L K S 0 1 2 1 0 2 6 0 1 0 1 1 0 0 3 0 0 0 1 1 0 0 20 1 2479.1252 Q03164;B4DIJ7 Q03164 3785 3804 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180;Histone-lysine N-methyltransferase yes no 3 5.0768E-32 169.6 1 0.75593 1.0122 NaN 1 Median 0.75593 1.0122 NaN 1 0 Median NaN NaN NaN 0 0 Median 10605000 6347200 4257500 10605000 6347200 4257500 0 0 0 5123 1438 5240 18571 28072;28073;28074 28073 3 HRVVGAVIDQGLITR LFKRRRVLNRERRLRHRVVGAVIDQGLITR HRVVGAVIDQGLITRHHLKKRASSARANIT R H R T R H 1 2 0 1 0 1 0 2 1 2 1 0 0 0 0 0 1 0 0 3 0 0 15 1 1632.9424 A0A0B4J220;L0R588;E9PLD3;E9PRG8 A0A0B4J220 34 48 C11orf98;C11orf48 Uncharacterized protein C11orf98 yes no 3 0.00043321 88.706 4 0.73022 1.0069 10.151 4 Median 0.73022 1.0069 10.151 4 0 Median NaN NaN NaN 0 0 Median 41070000 21004000 20066000 41070000 21004000 20066000 0 0 0 5124 415 5241 18572;18573;18574;18575 28075;28076;28077;28078;28079 28075 5 HSDASLTDTVNK HRLFNWLSETLANARHSDASLTDTVNKALG NARHSDASLTDTVNKALGLSTDDAYEELRQ R H S N K A 1 0 1 2 0 0 0 0 1 0 1 1 0 0 0 2 2 0 0 1 0 0 12 0 1286.6103 Q9UK61;A0A024R363;A0A087X0F1 Q9UK61 784 795 FAM208A;C3orf63 Protein FAM208A yes no 2 0.0082706 108.9 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1002700 1002700 0 1002700 1002700 0 0 0 0 5125 1787 5242 18576;18577 28080;28081;28082 28080 3 HSGNITFDEIVNIAR LKEPPRDRKKQKNIKHSGNITFDEIVNIAR HSGNITFDEIVNIARQMRHRSLARELSGTI K H S A R Q 1 1 2 1 0 0 1 1 1 3 0 0 0 1 0 1 1 0 0 1 0 0 15 0 1684.8533 P30050 P30050 100 114 RPL12 60S ribosomal protein L12 yes yes 2;3 7.0249E-179 332.56 8 4 0.7585 1.0369 7.0746 12 Median 0.78229 1.0724 2.8196 8 0 Median 0.57543 0.95416 4.1275 4 0 Median 1359800000 773390000 586370000 812670000 441630000 371040000 547090000 331760000 215330000 5126 1307 5243 18578;18579;18580;18581;18582;18583;18584;18585;18586;18587;18588;18589 28083;28084;28085;28086;28087;28088;28089;28090;28091;28092;28093;28094;28095;28096;28097;28098;28099;28100;28101;28102;28103 28088 21 HSGPNSADSANDGFVR EVFKSHRTEMDWVLKHSGPNSADSANDGFV SGPNSADSANDGFVRLRGLPFGCTKEEIVQ K H S V R L 2 1 2 2 0 0 0 2 1 0 0 0 0 1 1 3 0 0 0 1 0 0 16 0 1629.7132 A0A024R7T3;P52597;B4DKS8 A0A024R7T3 99 114 HNRPF;HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 2;3 3.3745E-85 257.2 7 3 0.33645 0.45341 122.34 9 Median 0.32206 0.43346 15.774 6 0 Median 3.2688 4.5469 4.7846 3 0 Median 192440000 139360000 53077000 171140000 133530000 37604000 21305000 5831900 15473000 5127 184 5244 18590;18591;18592;18593;18594;18595;18596;18597;18598;18599 28104;28105;28106;28107;28108;28109;28110;28111;28112;28113;28114;28115;28116;28117;28118;28119;28120;28121 28109 18 HSHEIFR KKKKKCSIHKERPQKHSHEIFRDSSLVNEQ IHKERPQKHSHEIFRDSSLVNEQSQITRRK K H S F R D 0 1 0 0 0 0 1 0 2 1 0 0 0 1 0 1 0 0 0 0 0 0 7 0 924.4566 B4DZG2;A0A024R8C1;Q15361 B4DZG2 32 38 TTF1 Transcription termination factor 1 yes no 3 0.016077 45.882 1 0.86825 1.1512 NaN 1 Median 0.86825 1.1512 NaN 1 0 Median NaN NaN NaN 0 0 Median 12744000 8593600 4150800 12744000 8593600 4150800 0 0 0 5128 195 5245 18600 28122 28122 1 HSIAQLDPEALGNIK GGGESLRLLASDLQRHSIAQLDPEALGNIK HSIAQLDPEALGNIKKLSNRLAQICSSIRT R H S I K K 2 0 1 1 0 1 1 1 1 2 2 1 0 0 1 1 0 0 0 0 0 0 15 0 1604.8522 A8K7A2;Q53HL2 A8K7A2 249 263 CDCA8 Borealin yes no 2;3 6.1592E-120 297.5 8 4 0.94262 1.2244 6.989 11 Median 0.99076 1.2627 3.3561 7 0 Median 0.69033 1.098 2.6105 4 0 Median 585760000 329760000 255990000 270460000 140320000 130140000 315290000 189440000 125850000 5129 632 5246 18601;18602;18603;18604;18605;18606;18607;18608;18609;18610;18611;18612 28123;28124;28125;28126;28127;28128;28129;28130;28131;28132;28133;28134;28135;28136;28137;28138;28139;28140;28141;28142;28143 28129 18 HSIAQLDPEALGNIKK GGGESLRLLASDLQRHSIAQLDPEALGNIK SIAQLDPEALGNIKKLSNRLAQICSSIRTH R H S K K L 2 0 1 1 0 1 1 1 1 2 2 2 0 0 1 1 0 0 0 0 0 0 16 1 1732.9472 A8K7A2;Q53HL2 A8K7A2 249 264 CDCA8 Borealin yes no 3 2.6065E-07 105.17 4 2 0.98042 1.2024 10.81 6 Median 1.0578 1.3 8.3895 4 0 Median 0.68325 1.0933 0.7029 2 0 Median 135470000 71485000 63984000 91724000 45322000 46401000 43745000 26162000 17583000 5130 632 5247 18613;18614;18615;18616;18617;18618 28144;28145;28146;28147;28148;28149;28150;28151;28152 28149 9 HSLAFVVR RRLEVKPHALELPDKHSLAFVVRIERIDGV ALELPDKHSLAFVVRIERIDGVSLLVQRTI K H S V R I 1 1 0 0 0 0 0 0 1 0 1 0 0 1 0 1 0 0 0 2 0 0 8 0 927.52904 A0A024RD36;Q6DKI1;R4GMU7;B7Z4G0 A0A024RD36 94 101 RPL7L1 60S ribosomal protein L7-like 1 yes no 2 0.00047588 124.59 3 0.88322 1.2073 3.0601 3 Median 0.88322 1.2073 3.0601 3 0 Median NaN NaN NaN 0 0 Median 127860000 67031000 60830000 127860000 67031000 60830000 0 0 0 5131 311 5248 18619;18620;18621 28153;28154;28155;28156;28157;28158 28153 6 HSLDHLLK MFDTHQAARLLNLGRHSLDHLLKLYCNVDS RLLNLGRHSLDHLLKLYCNVDSNKQYQLAD R H S L K L 0 0 0 1 0 0 0 0 2 0 3 1 0 0 0 1 0 0 0 0 0 0 8 0 961.53451 Q01780;B4DKG8;B4DFE4;Q59G73 Q01780 401 408 EXOSC10 Exosome component 10 yes no 3 0.040964 67.981 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2072300 2072300 0 2072300 2072300 0 0 0 0 5132 1433 5249 18622 28159 28159 1 HSLECTLILTEGDSAK KGIPKLDDANDAGGKHSLECTLILTEGDSA SLECTLILTEGDSAKSLAVSGLGVIGRDRY K H S A K S 1 0 0 1 1 0 2 1 1 1 3 1 0 0 0 2 2 0 0 0 0 0 16 0 1772.8615 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 444 459 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 4.0863E-50 251.91 5 1 0.59679 0.75687 5.758 2 Median 0.59679 0.75687 5.758 2 0 Median NaN NaN NaN 0 0 Median 29393000 22510000 6883100 24724000 17841000 6883100 4668400 4668400 0 5133 1437 5250 18623;18624;18625;18626;18627;18628 28160;28161;28162;28163;28164;28165;28166;28167 28163 8 HSLNSSSASTTEPDFQK EVPFDVPELWYEDEKHSLNSSSASTTEPDF LNSSSASTTEPDFQKDILIACRLNQKKGAY K H S Q K D 1 0 1 1 0 1 1 0 1 0 1 1 0 1 1 5 2 0 0 0 0 0 17 0 1834.8333 E5KNY5;P42704;B4DSR0 E5KNY5 1021 1037 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2;3 0.00030642 115.83 2 1 0.4194 0.53149 8.1436 2 Median 0.4194 0.53149 8.1436 2 0 Median NaN NaN NaN 0 0 Median 13836000 7426100 6409900 11970000 7426100 4544300 1865600 0 1865600 5134 1001 5251 18629;18630;18631 28168;28169;28170 28168 3 HSLSGRPLK KMEESMKKAAEVLNKHSLSGRPLKVKEDPD AEVLNKHSLSGRPLKVKEDPDGEHARRAMQ K H S L K V 0 1 0 0 0 0 0 1 1 0 2 1 0 0 1 2 0 0 0 0 0 0 9 1 993.57196 P52272;A0A087X0X3;Q59ES8;M0R019;B4DEG4;M0R2T0;M0R0N3;M0QYQ7 P52272 135 143 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2;3 0.0099929 76.478 3 0.34006 0.4415 3.1868 3 Median 0.34006 0.4415 3.1868 3 0 Median NaN NaN NaN 0 0 Median 81463000 60832000 20631000 81463000 60832000 20631000 0 0 0 5135 1363 5252 18632;18633;18634 28171;28172;28173 28172 3 HSNVNLTIFTAR PCPECAGEVAEFLARHSNVNLTIFTARLCY LARHSNVNLTIFTARLCYFWDTDYQEGLCS R H S A R L 1 1 2 0 0 0 0 0 1 1 1 0 0 1 0 1 2 0 0 1 0 0 12 0 1371.7259 Q6ICH2;B2CML4;Q96AK3;A0A087WX48;M4VR43;F2YHL7;Q8IUX4;M4VP52;Q59GY0;Q9NRW3 Q6ICH2 123 134 bK150C2.9;APOBEC3DE;APOBEC3D;APOBEC3F;APOBEC3C DNA dC->dU-editing enzyme APOBEC-3D;DNA dC->dU-editing enzyme APOBEC-3F;DNA dC->dU-editing enzyme APOBEC-3C no no 2;3 0.0026826 95.618 2 0.46506 0.64789 NaN 1 Median 0.46506 0.64789 NaN 1 0 Median NaN NaN NaN 0 0 Median 6365100 4782400 1582800 6365100 4782400 1582800 0 0 0 5136 680;1161 5253 18635;18636 28174;28175 28174 2 HSNVVILTTSNITEK RVVNAVLTQIDQIKRHSNVVILTTSNITEK HSNVVILTTSNITEKIDVAFVDRADIKQYI R H S E K I 0 0 2 0 0 0 1 0 1 2 1 1 0 0 0 2 3 0 0 2 0 0 15 0 1654.889 Q15645 Q15645 290 304 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 2;3 1.7313E-21 175.6 7 2 0.38753 0.49588 16.829 6 Median 0.38753 0.49588 16.829 6 0 Median NaN NaN NaN 0 0 Median 59792000 36222000 23570000 53790000 36222000 17568000 6001400 0 6001400 5137 1514 5254 18637;18638;18639;18640;18641;18642;18643;18644;18645 28176;28177;28178;28179;28180;28181;28182;28183;28184;28185;28186 28179 11 HSPIAPSSPSPQVLAQK FSTPTGSRTDSQSVRHSPIAPSSPSPQVLA PIAPSSPSPQVLAQKYSLVAKQESVVRRAS R H S Q K Y 2 0 0 0 0 2 0 0 1 1 1 1 0 0 4 4 0 0 0 1 0 0 17 0 1742.9315 Q9NQS7;B3KPD3 Q9NQS7 305 321 INCENP Inner centromere protein yes no 2;3 1.1731E-05 64.588 5 2 0.81272 1.0192 49.636 5 Median 0.85123 1.1062 5.5368 3 0 Median 0.31113 0.46193 32.339 2 0 Median 55577000 32577000 23000000 39108000 20192000 18916000 16469000 12385000 4084100 5138 1752 5255 18646;18647;18648;18649;18650;18651;18652 28187;28188;28189;28190;28191;28192;28193;28194;28195;28196;28197 28190 10 HSQAVEELAEQLEQTK EAKTHEAQIQEMRQKHSQAVEELAEQLEQT SQAVEELAEQLEQTKRVKANLEKAKQTLEN K H S T K R 2 0 0 0 0 3 4 0 1 0 2 1 0 0 0 1 1 0 0 1 0 0 16 0 1838.901 A0A024R1N1;P35579;Q86XU5;A0A0U4BW16 A0A024R1N1 1194 1209 MYH9 Myosin-9 no no 2;3 3.2533E-148 300.71 8 1.0592 1.3507 6.0446 8 Median 1.0592 1.3507 6.0446 8 0 Median NaN NaN NaN 0 0 Median 436180000 212980000 223200000 436180000 212980000 223200000 0 0 0 5139 61;490 5256 18653;18654;18655;18656;18657;18658;18659;18660 28198;28199;28200;28201;28202;28203;28204;28205;28206;28207;28208;28209;28210;28211;28212;28213;28214;28215 28202 18 HSQAVEELAEQLEQTKR EAKTHEAQIQEMRQKHSQAVEELAEQLEQT QAVEELAEQLEQTKRVKANLEKAKQTLENE K H S K R V 2 1 0 0 0 3 4 0 1 0 2 1 0 0 0 1 1 0 0 1 0 0 17 1 1995.0021 A0A024R1N1;P35579;Q86XU5;A0A0U4BW16 A0A024R1N1 1194 1210 MYH9 Myosin-9 no no 3 0.0058246 55.094 3 1.013 1.3102 29.723 3 Median 1.013 1.3102 29.723 3 0 Median NaN NaN NaN 0 0 Median 21081000 9801100 11280000 21081000 9801100 11280000 0 0 0 5140 61;490 5257 18661;18662;18663 28216;28217;28218 28216 3 HSQELPAILDDTTLSGSDR LKEDTLEFLIKVVSRHSQELPAILDDTTLS LPAILDDTTLSGSDRNAHLNALKMNCYALI R H S D R N 1 1 0 3 0 1 1 1 1 1 3 0 0 0 1 3 2 0 0 0 0 0 19 0 2053.9916 B3KMS0;Q15021;B4E0B7;A0PJ76;F5GZK7 B3KMS0 92 110 NCAPD2 Condensin complex subunit 1 yes no 2;3 8.204E-52 228.76 7 2 0.66108 0.88508 15.483 9 Median 0.67055 0.91403 13.325 7 0 Median 0.45087 0.73789 2.1518 2 0 Median 572520000 355070000 217450000 350550000 204680000 145870000 221960000 150390000 71577000 5141 757 5258 18664;18665;18666;18667;18668;18669;18670;18671;18672 28219;28220;28221;28222;28223;28224;28225;28226;28227;28228;28229;28230;28231;28232;28233;28234;28235 28225 17 HSQELPAILDDTTLSGSDRNAHLNALK LKEDTLEFLIKVVSRHSQELPAILDDTTLS TLSGSDRNAHLNALKMNCYALIRLLESFET R H S L K M 3 1 2 3 0 1 1 1 2 1 5 1 0 0 1 3 2 0 0 0 0 0 27 1 2915.4737 B3KMS0;Q15021;B4E0B7;A0PJ76;F5GZK7 B3KMS0 92 118 NCAPD2 Condensin complex subunit 1 yes no 4 0.0056513 39.818 1 0.2054 0.27606 NaN 1 Median 0.2054 0.27606 NaN 1 0 Median NaN NaN NaN 0 0 Median 6437000 4449200 1987900 6437000 4449200 1987900 0 0 0 5142 757 5259 18673 28236 28236 1 HSQFIGYPITLFVEK TEYLEERRIKEIVKKHSQFIGYPITLFVEK HSQFIGYPITLFVEKERDKEVSDDEAEEKE K H S E K E 0 0 0 0 0 1 1 1 1 2 1 1 0 2 1 1 1 0 1 1 0 0 15 0 1777.9403 K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;G3V2J8 K9JA46 210 224 EL52;HSP90AA1 Heat shock protein HSP 90-alpha no no 2;3 0.00025628 79.875 4 0.42783 0.54276 NaN 1 Median 0.42783 0.54276 NaN 1 0 Median NaN NaN NaN 0 0 Median 21067000 19926000 1141000 21067000 19926000 1141000 0 0 0 5143 1155 5260 18674;18675;18676;18677 28237;28238;28239;28240 28238 3 HSQFLGYPITLYLEK TEYLEEMQVKEVVEKHSQFLGYPITLYLEK HSQFLGYPITLYLEKEREKEISDGKAEEEK K H S E K E 0 0 0 0 0 1 1 1 1 1 3 1 0 1 1 1 1 0 2 0 0 0 15 0 1807.9509 Q58FF8 Q58FF8 127 141 HSP90AB2P Putative heat shock protein HSP 90-beta 2 yes yes 2;3 1.2699E-87 236.3 6 1 0.40533 0.51898 9.0564 5 Median 0.40533 0.51898 9.0564 5 0 Median NaN NaN NaN 0 0 Median 287750000 207230000 80520000 272420000 207230000 65181000 15339000 0 15339000 5144 1551 5261 18678;18679;18680;18681;18682;18683;18684 28241;28242;28243;28244;28245;28246;28247;28248 28246 8 HSQYHVDGSLEK DHYKAKATRHIFLIRHSQYHVDGSLEKDRT LIRHSQYHVDGSLEKDRTLTPLGREQAELT R H S E K D 0 0 0 1 0 1 1 1 2 0 1 1 0 0 0 2 0 0 1 1 0 0 12 0 1398.6528 Q96HS1 Q96HS1 105 116 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2;3 5.1935E-20 179.6 5 0.68163 0.86074 6.1707 5 Median 0.68163 0.86074 6.1707 5 0 Median NaN NaN NaN 0 0 Median 123600000 69224000 54378000 123600000 69224000 54378000 0 0 0 5145 1688 5262 18685;18686;18687;18688;18689 28249;28250;28251;28252;28253;28254 28250 6 HSSGCAFLSVK EGWEPDDDPIEEHKKHSSGCAFLSVKKQFE EHKKHSSGCAFLSVKKQFEELTLGEFLKLD K H S V K K 1 0 0 0 1 0 0 1 1 0 1 1 0 1 0 3 0 0 0 1 0 0 11 0 1191.5706 B7Z7B9;E7CU85;A0A0B4J1S3;O15392;A3E0Z5;H3BLT4;K7EMW2 B7Z7B9 80 90 BIRC5 Baculoviral IAP repeat-containing protein 5 yes no 2 4.4618E-22 197.79 4 2 0.8576 1.0838 21.453 5 Median 0.86487 1.0893 6.2233 4 0 Median 0.41853 0.66865 NaN 1 0 Median 216220000 131760000 84457000 167550000 91379000 76172000 48668000 40384000 8284400 5146 413 5263 18690;18691;18692;18693;18694;18695 28255;28256;28257;28258;28259;28260;28261;28262;28263;28264;28265;28266 28260 12 HSSLITPLQAVAQR YRSYRHGDLPDIQIKHSSLITPLQAVAQRD KHSSLITPLQAVAQRDPIIAKQLFSSLFSG K H S Q R D 2 1 0 0 0 2 0 0 1 1 2 0 0 0 1 2 1 0 0 1 0 0 14 0 1519.8471 P78527 P78527 2787 2800 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 5.8748E-36 169.93 6 0.42193 0.56856 5.217 4 Median 0.42193 0.56856 5.217 4 0 Median NaN NaN NaN 0 0 Median 55517000 38409000 17108000 55517000 38409000 17108000 0 0 0 5147 1427 5264 18696;18697;18698;18699;18700;18701 28267;28268;28269;28270;28271;28272;28273;28274 28273 8 HSSLITPLQAVAQRDPIIAK YRSYRHGDLPDIQIKHSSLITPLQAVAQRD TPLQAVAQRDPIIAKQLFSSLFSGILKEMD K H S A K Q 3 1 0 1 0 2 0 0 1 3 2 1 0 0 2 2 1 0 0 1 0 0 20 1 2157.227 P78527 P78527 2787 2806 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 2.9643E-11 114.58 2 0.40282 0.53255 19.556 2 Median 0.40282 0.53255 19.556 2 0 Median NaN NaN NaN 0 0 Median 20678000 14422000 6255900 20678000 14422000 6255900 0 0 0 5148 1427 5265 18702;18703 28275;28276;28277;28278 28275 4 HSSSTVFDLVEEYENICGSQVNILSK ASMSMFSDFLQSFLKHSSSTVFDLVEEYEN EYENICGSQVNILSKIVSRATPGLQKFSKT K H S S K I 0 0 2 1 1 1 3 1 1 2 2 1 0 1 0 5 1 0 1 3 0 0 26 0 2954.3968 P57740 P57740 165 190 NUP107 Nuclear pore complex protein Nup107 yes yes 3 6.0823E-08 92.716 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3463500 3463500 0 3463500 3463500 0 0 0 0 5149 1384 5266 18704 28279 28279 1 HSSTPNSSEFSR GKHHKKEKKKRKKEKHSSTPNSSEFSRK__ KEKHSSTPNSSEFSRK______________ K H S S R K 0 1 1 0 0 0 1 0 1 0 0 0 0 1 1 5 1 0 0 0 0 0 12 0 1334.5851 Q8N9Q2 Q8N9Q2 143 154 SREK1IP1 Protein SREK1IP1 yes yes 2 1.0794E-07 148.94 3 2 0.82088 1.113 4.646 5 Median 0.82695 1.113 3.6451 3 0 Plateau 0.81626 1.1119 7.6344 2 0 Median 33663000 19209000 14453000 21538000 12501000 9036900 12125000 6708400 5416500 5150 1644 5267 18705;18706;18707;18708;18709 28280;28281;28282;28283;28284;28285;28286;28287;28288;28289;28290 28283 11 HSTSPSLDSEYNEELNEDDSQSDEK AHLTPYSLQAIKASRHSTSPSLDSEYNEEL YNEELNEDDSQSDEKDQDAIETDAMIKKKT R H S E K D 0 0 2 4 0 1 5 0 1 0 2 1 0 0 1 6 1 0 1 0 0 0 25 0 2854.1537 P35251;H0Y9P8 P35251 1085 1109 RFC1 Replication factor C subunit 1 yes no 3 7.9319E-13 110.91 3 0.72336 0.92653 2.7402 2 Median 0.72336 0.92653 2.7402 2 0 Median NaN NaN NaN 0 0 Median 9434300 6144100 3290200 9434300 6144100 3290200 0 0 0 5151 1318 5268 18710;18711;18712 28291;28292;28293;28294;28295 28293 5 HSVATAADLELK LEAVLHLVIASSDTRHSVATAADLELKSKQ DTRHSVATAADLELKSKQSLIDWNNPAIIN R H S L K S 3 0 0 1 0 0 1 0 1 0 2 1 0 0 0 1 1 0 0 1 0 0 12 0 1253.6616 J3KN16;Q5VYK3;B3KV72;R4GMY1 J3KN16 446 457 KIAA0368;ECM29 Proteasome-associated protein ECM29 homolog yes no 2 0.0003457 118.23 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5152 1130 5269 18713 28296 28296 1 HSVIPPAAR VAGLRLRPRKTIRGKHSVIPPAARSGRRPG KTIRGKHSVIPPAARSGRRPGKKPHSTRRS K H S A R S 2 1 0 0 0 0 0 0 1 1 0 0 0 0 2 1 0 0 0 1 0 0 9 0 946.53485 Q9UIG0 Q9UIG0 1292 1300 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.0097965 77.282 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14563000 0 14563000 7420200 0 7420200 7142400 0 7142400 5153 1786 5270 18714;18715 28297;28298;28299 28299 3 HTDPQISGPLADLFR DPSTWSVDEVIQFMKHTDPQISGPLADLFR HTDPQISGPLADLFRQHEIDGKALFLLKSD K H T F R Q 1 1 0 2 0 1 0 1 1 1 2 0 0 1 2 1 1 0 0 0 0 0 15 0 1665.8475 Q9UQR0 Q9UQR0 642 656 SCML2 Sex comb on midleg-like protein 2 yes yes 3 0.0030734 75.574 2 0.41723 0.56207 NaN 1 Median 0.41723 0.56207 NaN 1 0 Median NaN NaN NaN 0 0 Median 4430100 3453900 976230 4430100 3453900 976230 0 0 0 5154 1799 5271 18716;18717 28300;28301 28300 2 HTDPVPDPR VDQSILTGESVSVIKHTDPVPDPRAVNQDK SVSVIKHTDPVPDPRAVNQDKKNMLFSGTN K H T P R A 0 1 0 2 0 0 0 0 1 0 0 0 0 0 3 0 1 0 0 1 0 0 9 0 1032.4989 A0A0S2Z3L2;P16615;H7C5W9 A0A0S2Z3L2 190 198 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 2 0.01233 62.546 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2965800 0 2965800 0 0 0 2965800 0 2965800 5155 456 5272 18718;18719 28302;28303 28302 2 HTDTDVLEACSK HLDALLRQIRNIVEKHTDTDVLEACSKTYH VEKHTDTDVLEACSKTYHALCNEEFTIFNR K H T S K T 1 0 0 2 1 0 1 0 1 0 1 1 0 0 0 1 2 0 0 1 0 0 12 0 1374.6085 B2R8Y6;Q6MZM4;Q6MZM3;Q6MZP3;Q8N3U4;B4DQ46;Q6AI02 B2R8Y6 554 565 DKFZp686P16143;DKFZp686C21148;DKFZp686I05169;STAG2;DKFZp686P168 Cohesin subunit SA-2 yes no 2 0.0019689 67.385 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3932400 3932400 0 3932400 3932400 0 0 0 0 5156 717 5273 18720 28304 28304 1 HTDVQFYTEVGEITTDLGK LHFHLKNAIMFGKKRHTDVQFYTEVGEITT QFYTEVGEITTDLGKHQHMHDRDDLYAEQM R H T G K H 0 0 0 2 0 1 2 2 1 1 1 1 0 1 0 0 4 0 1 2 0 0 19 0 2152.0324 Q9Y5B9 Q9Y5B9 735 753 SUPT16H FACT complex subunit SPT16 yes yes 2;3 7.0996E-72 222.75 7 2 0.77044 1.0353 9.7907 9 Median 0.82808 1.0519 8.0602 7 0 Median 0.58433 0.92699 15.623 2 0 Median 596330000 332380000 263950000 417610000 231770000 185840000 178720000 100610000 78115000 5157 1829 5274 18721;18722;18723;18724;18725;18726;18727;18728;18729 28305;28306;28307;28308;28309;28310;28311;28312;28313;28314;28315;28316;28317;28318;28319;28320;28321;28322 28310 18 HTFSGVASVESSSGEAFHVGK VAVPLPLHRAHYDLRHTFSGVASVESSSGE ASVESSSGEAFHVGKTPIVGQPSIPGGPVR R H T G K T 2 0 0 0 0 0 2 3 2 0 0 1 0 2 0 5 1 0 0 3 0 0 21 0 2118.997 CON__P12763 CON__P12763 313 333 yes yes 3 0.001164 55.621 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6211200 6211200 0 6211200 6211200 0 0 0 0 + 5158 959 5275 18730 28323 28323 1 HTGFLEISQHSQEFINR NGNWQEALQFVPKRKHTGFLEISQHSQEFI GFLEISQHSQEFINRLKKAKT_________ K H T N R L 0 1 1 0 0 2 2 1 2 2 1 0 0 2 0 2 1 0 0 0 0 0 17 0 2041.997 Q7L0Y3 Q7L0Y3 381 397 TRMT10C Mitochondrial ribonuclease P protein 1 yes yes 3 0.025381 30.152 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4892400 4892400 0 4892400 4892400 0 0 0 0 5159 1610 5276 18731 28324 28324 1 HTGPNSPDTANDGFVR EVFKSNNVEMDWVLKHTGPNSPDTANDGFV TGPNSPDTANDGFVRLRGLPFGCSKEEIVQ K H T V R L 1 1 2 2 0 0 0 2 1 0 0 0 0 1 2 1 2 0 0 1 0 0 16 0 1683.7601 G8JLB6;P31943;E9PCY7;D6RIU0;D6RBM0;D6RAM1;D6R9T0;D6RFM3;D6RIT2;D6RDU3;D6RJ04;D6RIH9;E5RGH4;E7EQJ0;E5RGV0;H0YAQ2;P55795 G8JLB6 99 114 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 2;3 2.32E-43 193 6 2 0.28144 0.37881 105.8 8 Median 0.26719 0.36278 7.4115 6 0 Median 2.5231 3.5807 16.073 2 0 Median 209190000 154950000 54243000 191960000 149800000 42156000 17233000 5146200 12087000 5160 1084;1380 5277 18732;18733;18734;18735;18736;18737;18738;18739 28325;28326;28327;28328;28329;28330;28331;28332;28333;28334;28335;28336;28337;28338 28327 14 HTGYVIELQHVVK PGFKRLAWGQPVGLRHTGYVIELQHVVKGP LRHTGYVIELQHVVKGPSGCVESLEVTCRR R H T V K G 0 0 0 0 0 1 1 1 2 1 1 1 0 0 0 0 1 0 1 3 0 0 13 0 1521.8304 B4DNN3;Q53HS0;A8K3A8;P47897;Q9H3A5;Q9BUZ3;B4DDN1;Q96AW5;A0A1B0GVU9;H7C0R3;A0A0U1RQX5;A0A0U1RRC8;A0A0U1RQX9 B4DNN3 590 602 QARS Glutamine--tRNA ligase yes no 3 0.00018737 46.159 2 0.55157 0.71006 9.7259 2 Median 0.55157 0.71006 9.7259 2 0 Median NaN NaN NaN 0 0 Median 12116000 6947500 5168500 12116000 6947500 5168500 0 0 0 5161 591 5278 18740;18741 28339;28340 28340 2 HTLNQIDSVK AAVDYINKHLPRGYKHTLNQIDSVKVWPRR PRGYKHTLNQIDSVKVWPRRPTGEVYDIEI K H T V K V 0 0 1 1 0 1 0 0 1 1 1 1 0 0 0 1 1 0 0 1 0 0 10 0 1153.6091 CON__P12763 CON__P12763 58 67 yes yes 2 4.7402E-55 228.64 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30066000 30066000 0 22921000 22921000 0 7145100 7145100 0 + 5162 959 5279 18742;18743;18744;18745;18746 28341;28342;28343;28344;28345 28341 5 HTLQLQGLDSGFVPSVQDFDK EREKWIHALEETILRHTLQLQGLDSGFVPS GLDSGFVPSVQDFDKKLTEADAYLQILIEQ R H T D K K 0 0 0 3 0 3 0 2 1 0 3 1 0 2 1 2 1 0 0 2 0 0 21 0 2330.1543 B7Z4Q6;B1AKJ6;Q96SU4;H0YE19 B7Z4Q6 33 53 OSBPL9 Oxysterol-binding protein;Oxysterol-binding protein-related protein 9 yes no 3 1.767E-08 113.73 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1218800 1218800 0 1218800 1218800 0 0 0 0 5163 673 5280 18747 28346 28346 1 HTLVEADIGIQAER DYGKHLLGVEDLLQKHTLVEADIGIQAERV KHTLVEADIGIQAERVRGVNASAQKFATDG K H T E R V 2 1 0 1 0 1 2 1 1 2 1 0 0 0 0 0 1 0 0 1 0 0 14 0 1550.8053 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;F8W6C1 B2ZZ89 570 583 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 1.1933E-06 137.01 4 0.76081 1.1916 8.635 4 Linear 0.76081 1.1916 8.635 4 0 Linear NaN NaN NaN 0 0 Median 19685000 10950000 8735500 19685000 10950000 8735500 0 0 0 5164 346 5281 18748;18749;18750;18751 28347;28348;28349;28350;28351 28348 5 HTVPCMPPAK TAEKNASSPEKAKGRHTVPCMPPAKQKFLK KAKGRHTVPCMPPAKQKFLKSTEEQELEKS R H T A K Q 1 0 0 0 1 0 0 0 1 0 0 1 1 0 3 0 1 0 0 1 0 0 10 0 1136.5471 Q643R0;Q9ULW0;B3KM90 Q643R0 194 203 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 0.0039267 56.81 1 0.42367 0.59093 NaN 1 Median NaN NaN NaN 0 0 Median 0.42367 0.59093 NaN 1 0 Median 4546600 3016700 1529900 0 0 0 4546600 3016700 1529900 5165 1581 5282 18752 28352;28353 28352 720 2 HVDLLEVAQETDGFSGSDLK EAILKLILKNENVDRHVDLLEVAQETDGFS EVAQETDGFSGSDLKEMCRDAALLCVREYV R H V L K E 1 0 0 3 0 1 2 2 1 0 3 1 0 1 0 2 1 0 0 2 0 0 20 0 2159.0382 Q8NBU5;B4E2J1 Q8NBU5 281 300 ATAD1 ATPase family AAA domain-containing protein 1 yes no 3 0.040177 33.764 1 0.53721 0.6787 NaN 1 Median 0.53721 0.6787 NaN 1 0 Median NaN NaN NaN 0 0 Median 3220800 2139500 1081300 3220800 2139500 1081300 0 0 0 5166 1649 5283 18753 28354 28354 1 HVDVLNLCFAQFEPDSTEYIK IFKEENLRTMYSQDRHVDVLNLCFAQFEPD LCFAQFEPDSTEYIKVHHKTYEDIDKRGKY R H V I K V 1 0 1 2 1 1 2 0 1 1 2 1 0 2 1 1 1 0 1 2 0 0 21 0 2524.1944 Q59GX8;G5E9W7;G5E9V5;P82650 Q59GX8 59 79 MRPS22 28S ribosomal protein S22, mitochondrial yes no 3 4.6344E-06 97.08 2 0.64849 0.84538 NaN 1 Median 0.64849 0.84538 NaN 1 0 Median NaN NaN NaN 0 0 Median 3938900 2941800 997130 3938900 2941800 997130 0 0 0 5167 1082 5284 18754;18755 28355;28356 28355 2 HVDYVADQIVTK QISFVNSIATSKGGRHVDYVADQIVTKLVD GGRHVDYVADQIVTKLVDVVKKKNKGGVAV R H V T K L 1 0 0 2 0 1 0 0 1 1 0 1 0 0 0 0 1 0 1 3 0 0 12 0 1386.7143 P11388 P11388 325 336 TOP2A DNA topoisomerase 2-alpha yes yes 2 1.1624E-80 237.37 7 4 0.83268 1.0911 16.804 9 Median 0.83268 1.0837 6.225 5 0 Median 0.8552 1.2686 21.312 4 0 Median 1250600000 702680000 547910000 967060000 539570000 427490000 283530000 163110000 120420000 5168 1256 5285 18756;18757;18758;18759;18760;18761;18762;18763;18764;18765;18766 28357;28358;28359;28360;28361;28362;28363;28364;28365;28366;28367;28368;28369;28370;28371;28372;28373;28374;28375;28376;28377;28378;28379;28380;28381;28382;28383;28384;28385;28386;28387;28388;28389;28390;28391;28392;28393;28394;28395;28396;28397;28398;28399;28400 28384 44 HVDYVVDQVVGK QISFVNSIATTKGGRHVDYVVDQVVGKLIE GGRHVDYVVDQVVGKLIEVVKKKNKAGVSV R H V G K L 0 0 0 2 0 1 0 1 1 0 0 1 0 0 0 0 0 0 1 5 0 0 12 0 1356.7038 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 318 329 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 2.5098E-29 171.62 3 1 0.73422 1.1197 10.11 4 Linear 0.82589 1.0491 11.962 3 0 Plateau 0.62492 0.92588 NaN 1 0 Median 104690000 57641000 47053000 94300000 51611000 42689000 10394000 6029200 4364500 5169 1437 5286 18767;18768;18769;18770 28401;28402;28403;28404 28403 4 HVEEFSPR CIVGDPSTAKSQFLKHVEEFSPRAVYTSGK AKSQFLKHVEEFSPRAVYTSGKASSAAGLT K H V P R A 0 1 0 0 0 0 2 0 1 0 0 0 0 1 1 1 0 0 0 1 0 0 8 0 999.47739 Q4ZG57;Q14566;B4DRF6 Q4ZG57 372 379 MCM6 DNA replication licensing factor MCM6 yes no 2 0.010068 113.41 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5170 1488 5287 18771 28405 28405 1 HVEFDFLIK NIINKLLKDKNEFHKHVEFDFLIKGQFLRM KNEFHKHVEFDFLIKGQFLRMPLDKHMEME K H V I K G 0 0 0 1 0 0 1 0 1 1 1 1 0 2 0 0 0 0 0 1 0 0 9 0 1146.6073 Q53T99;Q9GZL7 Q53T99 50 58 WDR12 Ribosome biogenesis protein WDR12 yes no 2 0.00054174 133.23 5 0.91121 1.1257 4.3058 5 Median 0.91121 1.1257 4.3058 5 0 Median NaN NaN NaN 0 0 Median 90963000 45960000 45003000 90963000 45960000 45003000 0 0 0 5171 1543 5288 18772;18773;18774;18775;18776 28406;28407;28408;28409;28410;28411;28412;28413 28408 8 HVFFFDTK SELHLLDFQGKQQNKHVFFFDTKKEVEQFD QGKQQNKHVFFFDTKKEVEQFDVATHLQTA K H V T K K 0 0 0 1 0 0 0 0 1 0 0 1 0 3 0 0 1 0 0 1 0 0 8 0 1039.5127 Q9Y3A2 Q9Y3A2 136 143 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 2 0.0015975 113.7 3 1 1.1313 1.1969 11.026 4 Linear 1.0303 1.2872 8.7452 3 0 Plateau 0.70646 1.0404 NaN 1 0 Median 77545000 35631000 41913000 69845000 30994000 38850000 7700200 4636800 3063300 5172 1814 5289 18777;18778;18779;18780 28414;28415;28416;28417;28418;28419;28420 28419 7 HVFFFDTKK SELHLLDFQGKQQNKHVFFFDTKKEVEQFD GKQQNKHVFFFDTKKEVEQFDVATHLQTAP K H V K K E 0 0 0 1 0 0 0 0 1 0 0 2 0 3 0 0 1 0 0 1 0 0 9 1 1167.6077 Q9Y3A2 Q9Y3A2 136 144 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 3 0.01686 34.253 1 1.2111 1.4554 NaN 1 Median 1.2111 1.4554 NaN 1 0 Median NaN NaN NaN 0 0 Median 4606100 2192600 2413500 4606100 2192600 2413500 0 0 0 5173 1814 5290 18781 28421;28422;28423 28422 3 HVFGQAVK ______________________________ VRQSKFRHVFGQAVKNDQCYDDIRVSRVTW R H V V K N 1 0 0 0 0 1 0 1 1 0 0 1 0 1 0 0 0 0 0 2 0 0 8 0 884.48684 B4DMH3;Q53G58;B3KN06;A0A024RBI5;Q59EA2;Q9ULV4;F8W1H8;F8VUX3;F8VSA4;F8VRE9;F8VTT6;F8VVB7 B4DMH3 12 19 CORO1C Coronin;Coronin-1C yes no 2 2.585E-05 138.85 4 1 1.3711 1.7846 6.4887 3 Median 1.3711 1.7846 6.4887 3 0 Median NaN NaN NaN 0 0 Median 185380000 78302000 107080000 181160000 78302000 102860000 4224200 0 4224200 5174 274 5291 18782;18783;18784;18785;18786 28424;28425;28426;28427;28428;28429;28430;28431 28428 8 HVGNQQYNVTYVVK GVHGPTTPCEEVSMKHVGNQQYNVTYVVKE KHVGNQQYNVTYVVKERGDYVLAVKWGEEH K H V V K E 0 0 2 0 0 2 0 1 1 0 0 1 0 0 0 0 1 0 2 4 0 0 14 0 1647.8369 O75369;Q68CT4;E7EN95;A0A0A0MT44 O75369 2563 2576 FLNB;DKFZp686A1668 Filamin-B yes no 2 1.6061E-09 144.7 3 0.9389 1.2088 40.204 2 Median 0.9389 1.2088 40.204 2 0 Median NaN NaN NaN 0 0 Median 8494400 5967300 2527100 8494400 5967300 2527100 0 0 0 5175 1199 5292 18787;18788;18789 28432;28433;28434;28435;28436;28437 28433 6 HVHPTTAPDVTSSLPEEK MTSGIRRNWIQTIMKHVHPTTAPDVTSSLP PTTAPDVTSSLPEEKNKSSCSFETCPRPTE K H V E K N 1 0 0 1 0 0 2 0 2 0 1 1 0 0 3 2 3 0 0 2 0 0 18 0 1943.9589 B9EGI2;U6FSN9;Q6WCQ1;J3KSW8;Q8N236 B9EGI2 480 497 MPRIP;Mprip-Ntrk1 fusion gene Tyrosine-protein kinase receptor;Myosin phosphatase Rho-interacting protein yes no 3 0.00062716 72.676 1 0.97338 1.2368 NaN 1 Median 0.97338 1.2368 NaN 1 0 Median NaN NaN NaN 0 0 Median 5816900 2556700 3260200 5816900 2556700 3260200 0 0 0 5176 928 5293 18790 28438 28438 1 HVINFDLPSDIEEYVHR ATAVAARGLDISNVKHVINFDLPSDIEEYV INFDLPSDIEEYVHRIGRTGRVGNLGLATS K H V H R I 0 1 1 2 0 0 2 0 2 2 1 0 0 1 1 1 0 0 1 2 0 0 17 0 2082.0171 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1;A0A024R9A4;O15523;B4E132;A0A0J9YVQ7 A0A0D9SFB3 512 528 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 3 1.4201E-25 125.5 4 2 1.2726 1.7432 84.034 5 Median 0.81141 1.1129 52.895 3 0 Plateau 2.3906 3.7218 12.81 2 0 Median 195490000 101670000 93818000 142670000 87202000 55466000 52821000 14469000 38352000 5177 432 5294 18791;18792;18793;18794;18795;18796 28439;28440;28441;28442;28443;28444;28445;28446;28447;28448;28449 28446 11 HVLDALDPNAYEAFK IRLIKHDLKMNSGAKHVLDALDPNAYEAFK HVLDALDPNAYEAFKASRNLQDVVERVLHN K H V F K A 3 0 1 2 0 0 1 0 1 0 2 1 0 1 1 0 0 0 1 1 0 0 15 0 1701.8362 P49916;B7Z6I3;K7ERZ5;K7EQB6 P49916 428 442 LIG3 DNA ligase 3;DNA ligase yes no 2;3 0.0080607 88.021 3 0.8579 1.0788 8.9792 2 Median 0.8579 1.0788 8.9792 2 0 Median NaN NaN NaN 0 0 Median 15951000 8915700 7035100 15951000 8915700 7035100 0 0 0 5178 1356 5295 18797;18798;18799 28450;28451;28452 28450 2 HVLEYNEERDDFDLEA MEDFVTWVDSSKIKRHVLEYNEERDDFDLE VLEYNEERDDFDLEA_______________ R H V E A - 1 1 1 3 0 0 4 0 1 0 2 0 0 1 0 0 0 0 1 1 0 0 16 1 1992.8701 Q9NV31;Q96Q46 Q9NV31 169 184 IMP3;MRPS4 U3 small nucleolar ribonucleoprotein protein IMP3 yes no 3 0.0429 17.917 1 0.93995 1.2431 NaN 1 Median 0.93995 1.2431 NaN 1 0 Median NaN NaN NaN 0 0 Median 10208000 4505400 5703000 10208000 4505400 5703000 0 0 0 5179 1762 5296 18800 28453;28454 28453 2 HVLFPLK EPGNVENNGVLSFIKHVLFPLKSEFVILRD NGVLSFIKHVLFPLKSEFVILRDEKWGGNK K H V L K S 0 0 0 0 0 0 0 0 1 0 2 1 0 1 1 0 0 0 0 1 0 0 7 0 852.52216 A0A0S2Z4R1;P54577;A0A0C4DGZ5 A0A0S2Z4R1 266 272 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.026493 62.338 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3217000 3217000 0 3217000 3217000 0 0 0 0 5180 468 5297 18801 28455 28455 1 HVLVTLGEK FDKEGNGTVMGAEIRHVLVTLGEKMTEEEV MGAEIRHVLVTLGEKMTEEEVEMLVAGHED R H V E K M 0 0 0 0 0 0 1 1 1 0 2 1 0 0 0 0 1 0 0 2 0 0 9 0 994.58113 F8W1R7;J3KND3;G8JLA2;G3V1V0;B7Z6Z4;P60660;G3V1Y7;Q6IBG5;F8VPF3;F8VZU9;F8W180;H0YI43;F8VXL3 F8W1R7 111 119 MYL6 Myosin light polypeptide 6 yes no 2 1.3077E-05 128.12 3 2 0.95856 1.2308 75.77 5 Median 0.95218 1.2125 10.435 3 0 Median 3.0122 4.5563 3.3295 2 0 Median 138480000 66145000 72332000 110960000 59162000 51802000 27513000 6983400 20530000 5181 915 5298 18802;18803;18804;18805;18806 28456;28457;28458;28459;28460;28461;28462 28459 7 HVMQPYYK VGLNALEEWSIYIDRHVMQPYYKDILPCLD WSIYIDRHVMQPYYKDILPCLDGYLKTSAL R H V Y K D 0 0 0 0 0 1 0 0 1 0 0 1 1 0 1 0 0 0 2 1 0 0 8 0 1064.5113 P78527;B4DL41 P78527 783 790 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.0083038 64.803 1 0.54701 0.72294 NaN 1 Median NaN NaN NaN 0 0 Median 0.54701 0.72294 NaN 1 0 Median 1881900 1148000 733860 0 0 0 1881900 1148000 733860 5182 1427 5299 18807 28463;28464 28463 629 2 HVPGGGNVQIQNK YSHIQSKCGSKDNIKHVPGGGNVQIQNKKV IKHVPGGGNVQIQNKKVDISKVSSKCGSKA K H V N K K 0 0 2 0 0 2 0 3 1 1 0 1 0 0 1 0 0 0 0 2 0 0 13 0 1346.7055 E7EVA0;P27816;A0A024R2V0;H0Y2V1;F8W9U4;Q86Y04;B4DSQ1;Q8NDS5 E7EVA0 2161 2173 MAP4;DKFZp547H1810 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 0.0021741 91.265 4 0.88226 1.1108 13.249 4 Median 0.88226 1.1108 13.249 4 0 Median NaN NaN NaN 0 0 Median 27447000 14613000 12833000 27447000 14613000 12833000 0 0 0 5183 1017 5300 18808;18809;18810;18811 28465;28466;28467;28468;28469;28470;28471 28466 7 HVPPLTEEQLNR YEEDWEVFDPYYFIKHVPPLTEEQLNRKPA FIKHVPPLTEEQLNRKPALPLKTRSTPEFS K H V N R K 0 1 1 0 0 1 2 0 1 0 2 0 0 0 2 0 1 0 0 1 0 0 12 0 1431.747 A0A024R5Q8;Q05D32;H0YMB4 A0A024R5Q8 263 274 CTDSPL2 CTD small phosphatase-like protein 2 yes no 2 0.01443 85.963 2 0.58131 0.78506 NaN 1 Median 0.58131 0.78506 NaN 1 0 Median NaN NaN NaN 0 0 Median 9933300 4522600 5410700 9933300 4522600 5410700 0 0 0 5184 149 5301 18812;18813 28472;28473 28472 2 HVPVVYVDYPGPASLTQIYGTFNR PTDPGRKPLSHRFLRHVPVVYVDYPGPASL PGPASLTQIYGTFNRAMLRLIPSLRTYAEP R H V N R A 1 1 1 1 0 1 0 2 1 1 1 0 0 1 3 1 2 0 3 4 0 0 24 0 2692.3649 Q14204 Q14204 2730 2753 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 0.0088285 40.396 2 0.43088 0.59658 13.104 2 Median 0.43088 0.59658 13.104 2 0 Median NaN NaN NaN 0 0 Median 7537600 5454500 2083100 7537600 5454500 2083100 0 0 0 5185 1483 5302 18814;18815 28474;28475 28474 2 HVQGILR ______________________________ SLKLNGGRHVQGILRGFDPFMNLVIDECVE R H V L R G 0 1 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 1 0 0 7 0 821.48717 Q49AN9;F5H013;P62308;A8MWD9;C9JVQ0 Q49AN9 14 20 SNRPG;SNRPGP15 Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15 yes no 2 0.029096 64.776 1 0.6513 0.87093 NaN 1 Median 0.6513 0.87093 NaN 1 0 Median NaN NaN NaN 0 0 Median 20811000 12111000 8700200 20811000 12111000 8700200 0 0 0 5186 659 5303 18816 28476 28476 1 HVQLAFFPPGTVHPLER AGRLAAQSLDTSGLRHVQLAFFPPGTVHPL QLAFFPPGTVHPLERGVVQQVKGHYRQAML R H V E R G 1 1 0 0 0 1 1 1 2 0 2 0 0 2 3 0 1 0 0 2 0 0 17 0 1944.037 P07199 P07199 311 327 CENPB Major centromere autoantigen B yes yes 3;4 1.6059E-05 87.287 5 7 0.90632 1.234 19.414 10 Median 0.8785 1.1735 13.464 5 0 Median 0.95943 1.4869 20.939 5 0 Median 132160000 71941000 60220000 66058000 36511000 29547000 66103000 35430000 30673000 5187 1239 5304 18817;18818;18819;18820;18821;18822;18823;18824;18825;18826;18827;18828 28477;28478;28479;28480;28481;28482;28483;28484;28485;28486;28487;28488;28489;28490;28491;28492;28493;28494 28484 18 HVTNPAFTK LVVQLLQFQEDAFGKHVTNPAFTKLPAKCF EDAFGKHVTNPAFTKLPAKCFMDFKAGGAL K H V T K L 1 0 1 0 0 0 0 0 1 0 0 1 0 1 1 0 2 0 0 1 0 0 9 0 1013.5294 Q58EY4;Q92922;Q05CR1;Q05BW5;F8WE13 Q58EY4 95 103 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 2 1.8871E-08 143.37 2 2 1.1287 1.669 33.613 3 Median 0.80037 0.98456 NaN 1 0 Median 1.1693 1.7517 6.8424 2 0 Median 38213000 20669000 17544000 18377000 11184000 7193300 19836000 9485100 10351000 5188 1549 5305 18829;18830;18831;18832 28495;28496;28497;28498;28499;28500;28501 28498 7 HVTTAEGTPGTTDQEGPPPDGPPEK LPSRPHAPCPPAPRKHVTTAEGTPGTTDQE TTDQEGPPPDGPPEKRITATMDDMLSTRSS K H V E K R 1 0 0 2 0 1 3 4 1 0 0 1 0 0 6 0 5 0 0 1 0 0 25 0 2514.151 A0A0S2Q0B1;O14497;Q96T01;Q96SM7;Q8NC65;H0Y488;A0A1B0GTU5 A0A0S2Q0B1 1881 1905 ARID1A AT-rich interactive domain-containing protein 1A yes no 3 0.023504 15.238 2 1.7012 2.2573 7.8921 2 Median NaN NaN NaN 0 0 Median 1.7012 2.2573 7.8921 2 0 Median 4461800 1744000 2717800 0 0 0 4461800 1744000 2717800 5189 447 5306 18833;18834 28502;28503;28504;28505 28504 4 HVTYVVAK LRSLYKKAGLGKEKRHVTYVVAKKGVGRKV GLGKEKRHVTYVVAKKGVGRKVRRPAGVRG R H V A K K 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 1 3 0 0 8 0 915.5178 Q8IY81;B4DKU3 Q8IY81 797 804 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 0.0010273 117.18 1 0.46316 0.69079 NaN 1 Median NaN NaN NaN 0 0 Median 0.46316 0.69079 NaN 1 0 Median 11728000 8760500 2967700 0 0 0 11728000 8760500 2967700 5190 1628 5307 18835 28506 28506 1 HVVAVVK HSKPGSVPLVSEKKKHVVAVVK________ PLVSEKKKHVVAVVK_______________ K H V V K - 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 4 0 0 7 0 750.47521 A0A087WT20;Q9NV06 A0A087WT20 591 597 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2 0.014536 98.03 4 2 0.9666 1.1937 8.1014 6 Median 1.0069 1.2457 5.3004 4 0 Median 0.7299 1.0916 0.84965 2 0 Median 118950000 60112000 58842000 100300000 49325000 50979000 18650000 10787000 7862800 5191 331 5308 18836;18837;18838;18839;18840;18841 28507;28508;28509;28510;28511;28512;28513 28509 7 HVVFIAQR QVRLVRELEKKFSGKHVVFIAQRRILPKPT EKKFSGKHVVFIAQRRILPKPTRKSRTKNK K H V Q R R 1 1 0 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 0 2 0 0 8 0 968.55558 P62081;B5MCP9 P62081 91 98 RPS7 40S ribosomal protein S7 yes no 2 0.0009642 117.56 5 2 0.86651 1.1786 38.658 5 Median 0.87421 1.1983 7.1004 3 0 Median 0.37652 0.61484 1.185 2 0 Median 816450000 468760000 347690000 636030000 338860000 297180000 180420000 129910000 50513000 5192 1395 5309 18842;18843;18844;18845;18846;18847;18848 28514;28515;28516;28517;28518;28519;28520;28521;28522;28523;28524 28524 11 HVVLPVDDDSDLNVVASFDR ______________________________ VDDDSDLNVVASFDRRGEYIYTGNAKGKIL K H V D R R 1 1 1 5 0 0 0 0 1 0 2 0 0 1 1 2 0 0 0 5 0 0 20 0 2211.0808 B4DLF8;A0A024R9B5;B4DMM7;Q15291 B4DLF8 15 34 RBBP5 Retinoblastoma-binding protein 5 yes no 3 1.3204E-05 92.671 2 0.40974 0.55585 NaN 1 Median 0.40974 0.55585 NaN 1 0 Median NaN NaN NaN 0 0 Median 16025000 13222000 2802600 16025000 13222000 2802600 0 0 0 5193 215 5310 18849;18850 28525;28526 28526 2 HVVPNEVVVQR SGLKYKKGGVASGFKHVVPNEVVVQRLFQV SGFKHVVPNEVVVQRLFQVKGRRVVRATEV K H V Q R L 0 1 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 0 0 5 0 0 11 0 1274.7095 B7Z4U6;B7Z992;A0A0A0MS51;B7Z9A0;B7Z6N2;A0A0A0MT01;CON__Q3SX14;P06396;B7Z2X4;Q5T0I1;A0A0U1RQL8;Q5T0I0;Q69YR8 B7Z4U6 144 154 GSN;DKFZp313L0718 Gelsolin yes no 2 0.008849 57.859 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12460000 12460000 0 12460000 12460000 0 0 0 0 + 5194 392 5311 18851;18852 28527;28528 28528 2 HVVSCSSQDSTHCAENLLK ______________________________ CSSQDSTHCAENLLKADTYRKWRAAKAGEK R H V L K A 1 0 1 1 2 1 1 0 2 0 2 1 0 0 0 4 1 0 0 2 0 0 19 0 2170.9736 A0A024R0S8;Q59HH7;P18887;B4DEB2;B2RCY5;M0R0D2 A0A024R0S8 8 26 XRCC1 DNA repair protein XRCC1 yes no 3 0.00024514 78.848 3 0.73392 0.91917 12.603 3 Median 0.73392 0.91917 12.603 3 0 Median NaN NaN NaN 0 0 Median 41569000 25567000 16001000 41569000 25567000 16001000 0 0 0 5195 42 5312 18853;18854;18855 28529;28530;28531;28532;28533 28529 5 HWGGNVLGPK AIRTNYNDRYDEIRRHWGGNVLGPKSVARI DEIRRHWGGNVLGPKSVARIAKLEKAKAKE R H W P K S 0 0 1 0 0 0 0 3 1 0 1 1 0 0 1 0 0 1 0 1 0 0 10 0 1063.5563 P62424;Q9BY74;Q5T8U2 P62424 236 245 RPL7A;RP-L7a 60S ribosomal protein L7a yes no 2 1.6157E-05 107.66 2 0.55871 0.88443 2.8332 2 Median NaN NaN NaN 0 0 Median 0.55871 0.88443 2.8332 2 0 Median 66451000 42196000 24254000 0 0 0 66451000 42196000 24254000 5196 1411 5313 18856;18857 28534;28535 28535 2 HWMLDK ARGPKKHLKRVAAPKHWMLDKLTGVFAPRP HLKRVAAPKHWMLDKLTGVFAPRPSTGPHK K H W D K L 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 1 0 0 0 0 6 0 828.39524 B2R491;P62701;Q53HV1;Q8TD47;C9JEH7;A4FU11;Q496E4;P22090;B7Z1M6;Q53HI6 B2R491 17 22 RPS4X;RPS4Y2;RPS4Y1 40S ribosomal protein S4;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1 yes no 2 0.052578 43.461 1 0.3825 0.54044 NaN 1 Median NaN NaN NaN 0 0 Median 0.3825 0.54044 NaN 1 0 Median 4517800 3195100 1322800 0 0 0 4517800 3195100 1322800 5197 681 5314 18858 28536 28536 1 HWPFQVINDGDKPK IGRKFGDPVVQSDMKHWPFQVINDGDKPKV KHWPFQVINDGDKPKVQVSYKGETKAFYPE K H W P K V 0 0 1 2 0 1 0 1 1 1 0 2 0 1 2 0 0 1 0 1 0 0 14 1 1679.842 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DI39;B4DWK5;B4DNT8;Q9UQC1 A8K5I0 89 102 HEL-S-103;HSPA1B;HSPA1A;HSP70-1 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 3 0.00017458 45.79 1 0.86261 1.1003 NaN 1 Median 0.86261 1.1003 NaN 1 0 Median NaN NaN NaN 0 0 Median 5961700 2581900 3379800 5961700 2581900 3379800 0 0 0 5198 439 5315 18859 28537 28537 1 HYAGEVQYDVR FYVKPRVAVNNFGVKHYAGEVQYDVRGILE FGVKHYAGEVQYDVRGILEKNRDTFRDDLL K H Y V R G 1 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 2 2 0 0 11 0 1335.6208 Q69YP8;A0A0A0MQX1;Q9HD67;D6RGD1 Q69YP8 189 199 DKFZp762A083;MYO10 Unconventional myosin-X yes no 2 0.0027242 61.65 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5199 385 5316 18860 28538 28538 1 HYAHTDCPGHADYVK ITINAAHVEYSTAARHYAHTDCPGHADYVK HYAHTDCPGHADYVKNMITGTAPLDGCILV R H Y V K N 2 0 0 2 1 0 0 1 3 0 0 1 0 0 1 0 1 0 2 1 0 0 15 0 1769.758 P49411 P49411 121 135 TUFM Elongation factor Tu, mitochondrial yes yes 3 1.0947E-05 104.9 1 0.64373 0.79529 NaN 1 Median 0.64373 0.79529 NaN 1 0 Median NaN NaN NaN 0 0 Median 1295600 704650 590990 1295600 704650 590990 0 0 0 5200 1350 5317 18861 28539 28539 1 HYDDFFER DEEVFYCKVTNEIFRHYDDFFERTILCNSL VTNEIFRHYDDFFERTILCNSLVWSCAVTG R H Y E R T 0 1 0 2 0 0 1 0 1 0 0 0 0 2 0 0 0 0 1 0 0 0 8 0 1127.4672 D3DS96;Q9NRL2;Q05CW0;Q32ND1 D3DS96 36 43 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 0.038027 47.349 1 0.33509 0.4386 NaN 1 Median 0.33509 0.4386 NaN 1 0 Median NaN NaN NaN 0 0 Median 7315700 5358500 1957200 7315700 5358500 1957200 0 0 0 5201 979 5318 18862 28540 28540 1 HYDLNQLLEPR LRDVCFHLLKLYSDRHYDLNQLLEPRSITA YSDRHYDLNQLLEPRSITADPLDYRLSWHL R H Y P R S 0 1 1 1 0 1 1 0 1 0 3 0 0 0 1 0 0 0 1 0 0 0 11 0 1396.7099 P52948;H7C3P6;H0YDF4 P52948 1503 1513 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2;3 0.0015666 57.836 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4001800 4001800 0 4001800 4001800 0 0 0 0 5202 1367 5319 18863;18864 28541;28542 28541 2 HYFQNTQGLIFVVDSNDRER VWDVGGQDRIRPLWKHYFQNTQGLIFVVDS TQGLIFVVDSNDRERIQEVADELQKMLLVD K H Y E R I 0 2 2 2 0 2 1 1 1 1 1 0 0 2 0 1 1 0 1 2 0 0 20 1 2437.1775 P18085;C9JPM4;C9JAK5;F5H0C7;C9J1Z8;B4DJC8;B4DEB9;A4D0Z3;A0A024R3Q3;A0A024R0Y6;F5H423;B4DLJ3;P84085;P84077;P61204;B4DN70 P18085 80 99 ARF4;ARF3;ARF5;ARF1 ADP-ribosylation factor 4;ADP-ribosylation factor 5;ADP-ribosylation factor 1;ADP-ribosylation factor 3 yes no 3 0.0010743 32.981 1 0.55544 0.73803 NaN 1 Median 0.55544 0.73803 NaN 1 0 Median NaN NaN NaN 0 0 Median 16095000 10069000 6026200 16095000 10069000 6026200 0 0 0 5203 1281 5320 18865 28543;28544;28545 28543 3 HYPVFENPK DKSCSDRAMESTESRHYPVFENPKQGKLRT ESTESRHYPVFENPKQGKLRTKVENGEGTI R H Y P K Q 0 0 1 0 0 0 1 0 1 0 0 1 0 1 2 0 0 0 1 1 0 0 9 0 1129.5556 Q59EC0;D3DV75;H0YCK3;A0A024DAK3;P55265 Q59EC0 1006 1014 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.0018731 90.657 1 0.54011 0.68172 NaN 1 Median 0.54011 0.68172 NaN 1 0 Median NaN NaN NaN 0 0 Median 11535000 7657400 3878000 11535000 7657400 3878000 0 0 0 5204 1552 5321 18866 28546 28546 1 HYSSGYGQGDVLGFYINLPEDTETAK WRSKKGTKFHQSIGKHYSSGYGQGDVLGFY LGFYINLPEDTETAKSLPDTYKDKALIKFK K H Y A K S 1 0 1 2 0 1 2 4 1 1 2 1 0 1 1 2 2 0 3 1 0 0 26 0 2860.3192 A8K6T5;Q9UBL3;F5H8F7;B4DPT1;H0YBF6 A8K6T5 475 500 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 3 3.6378E-12 109.19 5 0.79157 1.0291 42.756 5 Median 0.79157 1.0291 42.756 5 0 Median NaN NaN NaN 0 0 Median 37022000 19478000 17544000 37022000 19478000 17544000 0 0 0 5205 627 5322 18867;18868;18869;18870;18871 28547;28548;28549;28550;28551;28552;28553;28554;28555;28556 28547 10 HYVGHGNAINELK GIIRIINPITMQCIKHYVGHGNAINELKFH IKHYVGHGNAINELKFHPRDPNLLLSVSKD K H Y L K F 1 0 2 0 0 0 1 2 2 1 1 1 0 0 0 0 0 0 1 1 0 0 13 0 1450.7317 O75530;B4DVW7;E9PJK2 O75530 185 197 EED Polycomb protein EED yes no 3 1.0939E-05 78.705 2 0.82615 1.0274 10.902 2 Median 0.82615 1.0274 10.902 2 0 Median NaN NaN NaN 0 0 Median 41692000 22055000 19638000 41692000 22055000 19638000 0 0 0 5206 1203 5323 18872;18873 28557;28558 28558 2 HYVYGPLPQSFDK MFFIGFTALVIMWQKHYVYGPLPQSFDKEW QKHYVYGPLPQSFDKEWVAKQTKRMLDMKV K H Y D K E 0 0 0 1 0 1 0 1 1 0 1 1 0 1 2 1 0 0 2 1 0 0 13 0 1549.7565 P13073;H3BPG0 P13073 123 135 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes no 2;3 4.1873E-05 136.5 3 0.72153 0.91266 10.482 3 Plateau 0.72153 0.91266 10.482 3 0 Plateau NaN NaN NaN 0 0 Median 20640000 12030000 8609400 20640000 12030000 8609400 0 0 0 5207 1263 5324 18874;18875;18876 28559;28560;28561;28562 28562 4 HYYEVSCHDQGLCR EWHGCRATKGLMKGKHYYEVSCHDQGLCRV KHYYEVSCHDQGLCRVGWSTMQASLDLGTD K H Y C R V 0 1 0 1 2 1 1 1 2 0 1 0 0 0 0 1 0 0 2 1 0 0 14 0 1822.7515 F1T0B3;A0A087X2G1;A3RJH1;Q92499 F1T0B3 52 65 DDX1 ATP-dependent RNA helicase DDX1 yes no 3 2.8432E-05 102.33 3 0.70365 0.93257 6.5255 3 Median 0.70365 0.93257 6.5255 3 0 Median NaN NaN NaN 0 0 Median 31256000 19368000 11888000 31256000 19368000 11888000 0 0 0 5208 378 5325 18877;18878;18879 28563;28564;28565;28566 28563 4 IAADILIK RAELSKNGEWYEVLKIAADILIKEEILSEN EWYEVLKIAADILIKEEILSENDQLSNQVV K I A I K E 2 0 0 1 0 0 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 0 8 0 855.54295 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 578 585 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.012076 97.798 2 2 0.79222 1.0722 7.9721 4 Median 0.91208 1.1319 1.3308 2 0 Median 0.65993 0.99376 4.4219 2 0 Median 63094000 38366000 24728000 31865000 19206000 12659000 31229000 19160000 12069000 5209 748 5326 18880;18881;18882;18883 28567;28568;28569;28570;28571 28568 5 IAAEIAQAEEQAR LKRLCGLKVEVDMEKIAAEIAQAEEQARKR EKIAAEIAQAEEQARKRQEEREKEAAEQAE K I A A R K 5 1 0 0 0 2 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 13 0 1398.7103 B4DGM3;A0A024R1S7;Q969G3;K7EMQ8;J3QKS7;H7C048 B4DGM3 267 279 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 2 0.00025526 155.26 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7125900 7125900 0 7125900 7125900 0 0 0 0 5210 66 5327 18884;18885 28572;28573 28572 2 IAALQAFADQLIAAGHYAK KHEDFDKAINVQEEKIAALQAFADQLIAAG QAFADQLIAAGHYAKGDISSRRNEVLDRWR K I A A K G 7 0 0 1 0 2 0 1 1 2 2 1 0 1 0 0 0 0 1 0 0 0 19 0 1971.0578 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16 Q13813 1501 1519 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 3 4.149E-44 189.52 4 0.81376 1.0222 2.512 3 Median 0.81376 1.0222 2.512 3 0 Median NaN NaN NaN 0 0 Median 144030000 78105000 65925000 144030000 78105000 65925000 0 0 0 5211 1476 5328 18886;18887;18888;18889 28574;28575;28576;28577;28578;28579;28580 28576 7 IAATGVVLDLDK FLAIQSVSGIMPDFRIAATGVVLDLDKSIK DFRIAATGVVLDLDKSIKIVKKLKLTGFPY R I A D K S 2 0 0 2 0 0 0 1 0 1 2 1 0 0 0 0 1 0 0 2 0 0 12 0 1213.6918 Q14692 Q14692 1008 1019 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 2.9353E-12 134.84 4 2 1.0029 1.2727 6.3777 6 Median 1.0464 1.2955 5.7134 4 0 Median 0.79115 1.2112 6.4469 2 0 Median 131580000 70257000 61322000 92555000 47553000 45002000 39024000 22704000 16320000 5212 1495 5329 18890;18891;18892;18893;18894;18895 28581;28582;28583;28584;28585;28586;28587;28588;28589 28586 9 IAAYLQSDQFCK PNLKAFMCRFEALEKIAAYLQSDQFCKMPI LEKIAAYLQSDQFCKMPINNKMAQWGNKPV K I A C K M 2 0 0 1 1 2 0 0 0 1 1 1 0 1 0 1 0 0 1 0 0 0 12 0 1442.6864 Q6FGJ9;Q59EJ5;P21266;B4E2J2 Q6FGJ9 198 209 GSTM3 Glutathione S-transferase Mu 3 yes no 2 1.7366E-07 125.48 4 1 0.30999 0.38998 119.63 4 Median 0.31425 0.39562 2.2856 3 0 Plateau 3.0545 4.2224 NaN 1 0 Median 31180000 21623000 9557300 25656000 19579000 6077000 5523700 2043500 3480300 5213 1286 5330 18896;18897;18898;18899;18900 28590;28591;28592;28593;28594;28595;28596;28597;28598;28599 28599 10 IADFGLCK LKLDNLLLDTEGFVKIADFGLCKEGMGYGD DTEGFVKIADFGLCKEGMGYGDRTSTFCGT K I A C K E 1 0 0 1 1 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 8 0 922.45824 Q16513;H0Y429;K7EL10;Q15523;A0A024R8D6;Q6P5Z2;Q16512 Q16513 798 805 PKN2;PKN1;PKN3 Serine/threonine-protein kinase N2;Serine/threonine-protein kinase N3;Serine/threonine-protein kinase N1 yes no 2 0.024269 55.676 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2437200 2437200 0 2437200 2437200 0 0 0 0 5214 1519 5331 18901 28600 28600 1 IADFGWSVHAPSLR IKPENLLLGLKGELKIADFGWSVHAPSLRR KIADFGWSVHAPSLRRKTMCGTLDYLPPEM K I A L R R 2 1 0 1 0 0 0 1 1 1 1 0 0 1 1 2 0 1 0 1 0 0 14 0 1554.7943 B2RC06;J3KT86;Q96GD4;J3QLN8 B2RC06 216 229 AURKB Aurora kinase B no no 3 4.1901E-10 82.102 2 0.68831 1.0873 1.1076 2 Median NaN NaN NaN 0 0 Median 0.68831 1.0873 1.1076 2 0 Median 68235000 37400000 30835000 0 0 0 68235000 37400000 30835000 5215 731;1686 5332 18902;18903 28601;28602;28603;28604 28604 4 IADGYEQAAR EEAEQLLDRGIHPIRIADGYEQAARVAIEH IHPIRIADGYEQAARVAIEHLDKISDSVLV R I A A R V 3 1 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 10 0 1092.52 B4DE30;E7ENZ3;B7ZAR1;B4DDU6;B4DZT5;B4DXI1;E9PCA1;Q9BU08;V9HW37;P48643;B4DX08;B4DYC8 B4DE30 58 67 CCT5;HEL-S-69 T-complex protein 1 subunit epsilon yes no 2 0.0036564 66.621 1 0.27033 0.37036 NaN 1 Median 0.27033 0.37036 NaN 1 0 Median NaN NaN NaN 0 0 Median 3756700 2985600 771070 3756700 2985600 771070 0 0 0 5216 795 5333 18904 28605 28605 1 IADPFVLSR HKGKKMHQCRHCDFKIADPFVLSRHILSVH RHCDFKIADPFVLSRHILSVHTKDLPFRCK K I A S R H 1 1 0 1 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 1 0 0 9 0 1016.5655 A0A024RC04;B7ZKJ5;P17010;Q8WWU0;Q8WXB7;E9PEP7;P08048 A0A024RC04 699 707 ZFX;ZFY Zinc finger X-chromosomal protein;Zinc finger Y-chromosomal protein yes no 2 0.00044866 87.639 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16610000 16610000 0 16610000 16610000 0 0 0 0 5217 286 5334 18905 28606 28606 1 IADQLEELNK VELKKLKHLEKSVEKIADQLEELNKELTGI KSVEKIADQLEELNKELTGIQQGFLPKDLQ K I A N K E 1 0 1 1 0 1 2 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1171.6085 A0A0S2Z3K4;J3QTA2;Q99933;A0A0U1RR89;C9JYK5 A0A0S2Z3K4 172 181 BAG1 BAG family molecular chaperone regulator 1 yes no 2 3.7014E-11 156.83 1 2 0.50048 0.70973 14.69 3 Median 0.50048 0.63467 NaN 1 0 Median 0.51922 0.77634 12.686 2 0 Median 20988000 14173000 6814700 3798100 2537300 1260700 17190000 11636000 5554000 5218 454 5335 18906;18907;18908 28607;28608;28609 28608 3 IAECSSQLAEEEEK QNSKFIKEKKLMEDRIAECSSQLAEEEEKA RIAECSSQLAEEEEKAKNLAKIRNKQEVMI R I A E K A 2 0 0 0 1 1 5 0 0 1 1 1 0 0 0 2 0 0 0 0 0 0 14 0 1621.7141 P35580 P35580 1008 1021 MYH10 Myosin-10 yes yes 2 1.0564E-19 171.67 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3521500 3521500 0 3521500 3521500 0 0 0 0 5219 1320 5336 18909;18910;18911;18912 28610;28611;28612;28613 28611 4 IAEEFEVELER PLDSLNTRLFLQGPKIAEEFEVELERGKTL QGPKIAEEFEVELERGKTLHIKALAVSDLN K I A E R G 1 1 0 0 0 0 5 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 11 0 1362.6667 A0A024R5C5;P11498;E9PS68 A0A024R5C5 1044 1054 PC Pyruvate carboxylase;Pyruvate carboxylase, mitochondrial yes no 2 0.00099721 129.85 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7271600 7271600 0 7271600 7271600 0 0 0 0 5220 139 5337 18913;18914;18915 28614;28615;28616;28617;28618 28615 5 IAEESNFPFIK LEGPPHSGKTALAAKIAEESNFPFIKICSP LAAKIAEESNFPFIKICSPDKMIGFSETAK K I A I K I 1 0 1 0 0 0 2 0 0 2 0 1 0 2 1 1 0 0 0 0 0 0 11 0 1293.6605 B4DGR3;I3L0N3;B7Z5J7;P46459;B7Z9U2;B4DH19;B4DSK5;D3DXJ4;Q96D47 B4DGR3 514 524 NSF Vesicle-fusing ATPase yes no 2 0.0044977 66.568 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4607400 4607400 0 4607400 4607400 0 0 0 0 5221 805 5338 18916 28619;28620 28620 2 IAEFTTNLTEEEEK QNCKLAKEKKLLEDRIAEFTTNLTEEEEKS RIAEFTTNLTEEEEKSKSLAKLKNKHEAMI R I A E K S 1 0 1 0 0 0 5 0 0 1 1 1 0 1 0 0 3 0 0 0 0 0 14 0 1652.7781 A0A024R1N1;P35579;Q86XU5;Q99529;A0A0U4BW16 A0A024R1N1 1001 1014 MYH9 Myosin-9 no no 2 8.2115E-103 284.28 5 1 0.99429 1.3093 73.597 5 Median 0.9878 1.2941 4.5031 4 0 Median 4.2499 6.6869 NaN 1 0 Median 536570000 255050000 281520000 469750000 241410000 228340000 66822000 13641000 53181000 5222 61;490 5339 18917;18918;18919;18920;18921;18922 28621;28622;28623;28624;28625;28626;28627;28628;28629;28630;28631;28632 28621 12 IAELCANSIK SEISGKRDKSEEVQKIAELCANSIKDYELQ EEVQKIAELCANSIKDYELQLASYTSGLET K I A I K D 2 0 1 0 1 0 1 0 0 2 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1117.5801 P15924;Q4LE79;B4E2A0;B4DKX6 P15924 950 959 DSP;DSP variant protein Desmoplakin yes no 2 0.008892 62.823 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1312200 1312200 0 1312200 1312200 0 0 0 0 5223 1270 5340 18923 28633 28633 1 IAELSEDDQK NKPLIVVANKCDVKRIAELSEDDQKIFTDL CDVKRIAELSEDDQKIFTDLQSEGLPVIET R I A Q K I 1 0 0 2 0 1 2 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1146.5404 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;B4DHR2 Q53GS0 296 305 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 4.0806E-11 158.87 2 2 0.68343 0.96825 9.292 4 Median 0.8309 1.042 0.35443 2 0 Median 0.56015 0.88841 2.1435 2 0 Median 129210000 80213000 49000000 46204000 25710000 20494000 83010000 54504000 28506000 5224 975 5341 18924;18925;18926;18927 28634;28635;28636;28637;28638;28639;28640;28641 28636 8 IAFAITAIK HILRVLNTNIDGRRKIAFAITAIKGVGRRY IDGRRKIAFAITAIKGVGRRYAHVVLRKAD K I A I K G 3 0 0 0 0 0 0 0 0 3 0 1 0 1 0 0 1 0 0 0 0 0 9 0 946.58515 P62269;A0A0G2JQH2;Q5GGW2 P62269 26 34 RPS18 40S ribosomal protein S18 yes no 1;2 0.013441 84.568 6 2 0.91717 1.209 36.302 7 Median 0.85093 1.1159 10.738 5 0 Median 1.4574 2.2687 1.4433 2 0 Median 570860000 295670000 275200000 511690000 269150000 242540000 59178000 26520000 32658000 5225 1402 5342 18928;18929;18930;18931;18932;18933;18934;18935 28642;28643;28644;28645;28646;28647;28648;28649;28650;28651;28652;28653;28654 28651 13 IAFFATR VYNVFIDNLDERLPRIAFFATRTIRAGEEL NLDERLPRIAFFATRTIRAGEELTFDYNMQ R I A T R T 2 1 0 0 0 0 0 0 0 1 0 0 0 2 0 0 1 0 0 0 0 0 7 0 824.45447 O43463 O43463 347 353 SUV39H1 Histone-lysine N-methyltransferase SUV39H1 yes yes 2 0.015517 110.34 2 1 0.79292 1.0867 5.6425 3 Median 0.80555 1.0825 0.54732 2 0 Median 0.79187 1.1934 NaN 1 0 Median 45321000 25202000 20119000 28828000 16492000 12337000 16492000 8709800 7782600 5226 1185 5343 18936;18937;18938 28655;28656;28657 28656 3 IAFGGETDEATR LRHFKRILSLLEGQKIAFGGETDEATRYIA GQKIAFGGETDEATRYIAPTVLTDVDPKTK K I A T R Y 2 1 0 1 0 0 2 2 0 1 0 0 0 1 0 0 2 0 0 0 0 0 12 0 1265.5888 J3QRD1;Q59H65;P51648;Q68D64;J3QS00;I3L1M4 J3QRD1 300 311 ALDH3A2;DKFZp686E23276 Fatty aldehyde dehydrogenase yes no 2 0.0014593 97.472 4 0.45934 0.59991 4.7153 3 Plateau 0.45934 0.59991 4.7153 3 0 Plateau NaN NaN NaN 0 0 Median 23056000 17445000 5610600 23056000 17445000 5610600 0 0 0 5227 1145 5344 18939;18940;18941;18942 28658;28659;28660;28661 28661 4 IAFTDADDVAILTYVK AEGAAEPEPQRHAGRIAFTDADDVAILTYV AFTDADDVAILTYVKENARSPSSVTGNALW R I A V K E 3 0 0 3 0 0 0 0 0 2 1 1 0 1 0 0 2 0 1 2 0 0 16 0 1753.9138 Q9NYB0 Q9NYB0 134 149 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes yes 2 6.3282E-10 128.68 3 0.93752 1.2367 9.001 3 Median 0.93752 1.2367 9.001 3 0 Median NaN NaN NaN 0 0 Median 10030000 5211600 4818100 10030000 5211600 4818100 0 0 0 5228 1769 5345 18943;18944;18945 28662;28663;28664;28665;28666 28664 5 IAGAGLLFVGGGIGGTILYAK RRYSTSGSSGLTTGKIAGAGLLFVGGGIGG LFVGGGIGGTILYAKWDSHFRESVEKTIPY K I A A K W 3 0 0 0 0 0 0 7 0 3 3 1 0 1 0 0 1 0 1 1 0 0 21 0 1947.1193 Q16891;B9A067;B4DQY2;B4DKR1;B4DT20;Q05DN3;B4E2B5;Q3B7X4;A0A087WYS0;D6RAW4 Q16891 46 66 IMMT MICOS complex subunit MIC60 yes no 2 2.9993E-16 87.498 2 0.59682 0.74889 16.592 2 Median 0.59682 0.74889 16.592 2 0 Median NaN NaN NaN 0 0 Median 5452000 3386000 2065900 5452000 3386000 2065900 0 0 0 5229 1524 5346 18946;18947 28667;28668 28667 1 IAGPGLGSGVR FRVPVKDVVDPSKVKIAGPGLGSGVRARVL SKVKIAGPGLGSGVRARVLQSFTVDSSKAG K I A V R A 1 1 0 0 0 0 0 4 0 1 1 0 0 0 1 1 0 0 0 1 0 0 11 0 982.55598 O75369;A0A024R321;Q68CT4;E7EN95 O75369 1426 1436 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.034974 66.962 1 0.85254 1.1993 NaN 1 Median 0.85254 1.1993 NaN 1 0 Median NaN NaN NaN 0 0 Median 3642600 1868400 1774100 3642600 1868400 1774100 0 0 0 5230 1199 5347 18948 28669 28669 1 IAGVGSLPLSGVEEK PPPSPQQMPPLEKARIAGVGSLPLSGVEEK IAGVGSLPLSGVEEKMFSLLKRAKVQLFKI R I A E K M 1 0 0 0 0 0 2 3 0 1 2 1 0 0 1 2 0 0 0 2 0 0 15 0 1454.7981 Q9UMN6 Q9UMN6 777 791 KMT2B Histone-lysine N-methyltransferase 2B yes yes 2 0.0084119 71.085 1 1 0.69198 0.86781 NaN 1 Median 0.69198 0.86781 NaN 1 0 Median NaN NaN NaN 0 0 Median 4196600 891670 3305000 1576400 891670 684740 2620200 0 2620200 5231 1794 5348 18949;18950 28670;28671 28670 2 IAHIPLYFVNAQFPR FNKGALLSVGWSTGRIAHIPLYFVNAQFPR IAHIPLYFVNAQFPRFSPVLGRAQEPPAGG R I A P R F 2 1 1 0 0 1 0 0 1 2 1 0 0 2 2 0 0 0 1 1 0 0 15 0 1784.9726 F8VZ44;B4DDU7;Q53HS1;Q9NRG9 F8VZ44 355 369 AAAS Aladin yes no 3 0.0002617 55.899 3 1.0613 1.436 NaN 1 Median 1.0613 1.436 NaN 1 0 Median NaN NaN NaN 0 0 Median 8857000 4958900 3898200 8857000 4958900 3898200 0 0 0 5232 796 5349 18951;18952;18953 28672;28673;28674 28673 3 IAILGFAFK SRIIDSLFNTVTDKKIAILGFAFKKDTGDT TVTDKKIAILGFAFKKDTGDTRESSSIYIS K I A F K K 2 0 0 0 0 0 0 1 0 2 1 1 0 2 0 0 0 0 0 0 0 0 9 0 978.59024 O60701;Q9NQ82 O60701 331 339 UGDH;GDH UDP-glucose 6-dehydrogenase yes no 2 0.0026176 91.906 3 0.49562 0.63188 40.096 2 Median 0.49562 0.63188 40.096 2 0 Median NaN NaN NaN 0 0 Median 4733100 3322100 1411000 4733100 3322100 1411000 0 0 0 5233 1192 5350 18954;18955;18956 28675;28676;28677 28676 3 IAILGYR ______________________________ MPQSKSRKIAILGYRSVGKSSLTIQFVEGQ K I A Y R S 1 1 0 0 0 0 0 1 0 2 1 0 0 0 0 0 0 0 1 0 0 0 7 0 804.48577 Q6NZ61;A8K005;A0A090N900;Q15382;F8WBL3 Q6NZ61 9 15 RHEB GTP-binding protein Rheb yes no 2 0.021792 109.94 2 0.38218 0.51296 NaN 1 Median 0.38218 0.51296 NaN 1 0 Median NaN NaN NaN 0 0 Median 14146000 11964000 2182700 14146000 11964000 2182700 0 0 0 5234 383 5351 18957;18958 28678;28679 28679 2 IAIPGLAGAGNSVLLVSNLNPER LAIPSAAAAAAAAGRIAIPGLAGAGNSVLL AGNSVLLVSNLNPERVTPQSLFILFGVYGD R I A E R V 3 1 3 0 0 0 1 3 0 2 4 0 0 0 2 2 0 0 0 2 0 0 23 0 2274.2696 A6NLN1;A0A0U1RRM4;P26599;K7EK45 A6NLN1 322 344 PTBP1 Polypyrimidine tract-binding protein 1 yes no 2 0.0013186 72.428 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13293000 13293000 0 13293000 13293000 0 0 0 0 5235 489 5352 18959;18960 28680;28681 28680 2 IAIYELLFK ______________________________ MPKKNRIAIYELLFKEGVMVAKKDVHMPKH R I A F K E 1 0 0 0 0 0 1 0 0 2 2 1 0 1 0 0 0 0 1 0 0 0 9 0 1108.6532 P46783;F6U211;Q59GE4;S4R435 P46783 9 17 RPS10;RPS10-NUDT3 40S ribosomal protein S10 yes no 1;2 5.5771E-05 129.47 7 0.83576 1.063 3.2219 4 Median 0.83576 1.063 3.2219 4 0 Median NaN NaN NaN 0 0 Median 206600000 118900000 87702000 206600000 118900000 87702000 0 0 0 5236 1347 5353 18961;18962;18963;18964;18965;18966;18967 28682;28683;28684;28685;28686;28687;28688;28689;28690;28691;28692 28686 11 IAIYLSK FMVINNDDTESAEMKIAIYLSKSGICSLHP DTESAEMKIAIYLSKSGICSLHPLLRGWEE K I A S K S 1 0 0 0 0 0 0 0 0 2 1 1 0 0 0 1 0 0 1 0 0 0 7 0 806.49019 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 621 627 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.012422 114.19 4 0.87091 1.1025 5.0193 3 Median 0.87091 1.1025 5.0193 3 0 Median NaN NaN NaN 0 0 Median 80490000 37210000 43280000 80490000 37210000 43280000 0 0 0 5237 748 5354 18968;18969;18970;18971 28693;28694;28695;28696 28693 4 IALFSTR VFNVFIDNLDTRLPRIALFSTRTINAGEEL NLDTRLPRIALFSTRTINAGEELTFDYQMK R I A T R T 1 1 0 0 0 0 0 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 7 0 806.46504 H0Y306;Q9H5I1;Q5JSS2 H0Y306 120 126 SUV39H2 Histone-lysine N-methyltransferase SUV39H2 yes no 2 0.039351 54.571 1 1 0.81056 1.132 NaN 1 Median NaN NaN NaN 0 0 Median 0.81056 1.132 NaN 1 0 Median 7751000 4845400 2905600 1427000 1427000 0 6324000 3418400 2905600 5238 1087 5355 18972;18973 28697;28698 28697 2 IALGIPLPEIK ASKATGYPLAFIAAKIALGIPLPEIKNVVS IAAKIALGIPLPEIKNVVSGKTSACFEPSL K I A I K N 1 0 0 0 0 0 1 1 0 3 2 1 0 0 2 0 0 0 0 0 0 0 11 0 1162.7325 Q5R210;Q5R208;Q5R206;A8K134;A0A024R454;P31327;Q5R209;Q5R207 Q5R210 741 751 CPS1 Carbamoyl-phosphate synthase [ammonia], mitochondrial yes no 2 0.00019396 122.33 3 0.65882 0.80386 NaN 1 Median 0.65882 0.80386 NaN 1 0 Median NaN NaN NaN 0 0 Median 6739200 5339600 1399600 6739200 5339600 1399600 0 0 0 5239 116 5356 18974;18975;18976 28699;28700;28701;28702 28699 4 IALHTALNNPYYYLK SAAHALREHLNAAPRIALHTALNNPYYYLK IALHTALNNPYYYLKNEALKSEEGCIPNIA R I A L K N 2 0 2 0 0 0 0 0 1 1 3 1 0 0 1 0 1 0 3 0 0 0 15 0 1792.9512 B4E014;Q9UBD5 B4E014 535 549 ORC3 Origin recognition complex subunit 3 yes no 3 0.019533 24.084 1 1 0.5665 0.78102 5.2951 2 Median 0.60061 0.75232 NaN 1 0 Median 0.53432 0.81082 NaN 1 0 Median 25722000 15692000 10030000 15870000 9124800 6745000 9851800 6567000 3284800 5240 882 5357 18977;18978 28703;28704;28705 28703 3 IALLGGGK LQGLILNPIFRQNLRIALLGGGKAWSDDTS IFRQNLRIALLGGGKAWSDDTSQLGPDKHA R I A G K A 1 0 0 0 0 0 0 3 0 1 2 1 0 0 0 0 0 0 0 0 0 0 8 0 727.45922 B4DNU0;Q53HH3;Q92759 B4DNU0 126 133 GTF2H4 General transcription factor IIH subunit 4 yes no 2 0.02798 52.636 1 0.48742 0.62397 NaN 1 Median 0.48742 0.62397 NaN 1 0 Median NaN NaN NaN 0 0 Median 3771800 2384300 1387500 3771800 2384300 1387500 0 0 0 5241 841 5358 18979 28706 28706 1 IALLNVELELK YAGFEMQPKKYHNPKIALLNVELELKAEKD HNPKIALLNVELELKAEKDNAEIRVHTVED K I A L K A 1 0 1 0 0 0 2 0 0 1 4 1 0 0 0 0 0 0 0 1 0 0 11 0 1253.7595 B7Z1C9;B7Z7I4;Q6IBT3;Q53HV2;Q99832 B7Z1C9 109 119 CCT7 T-complex protein 1 subunit eta yes no 2 0.041328 46.158 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5242 903 5359 18980 28707 28707 1 IALNLEGCALSQGSLR PPTEPGPQSASEVEKIALNLEGCALSQGSL ALNLEGCALSQGSLRTGTQEVGGQDPGEAV K I A L R T 2 1 1 0 1 1 1 2 0 1 4 0 0 0 0 2 0 0 0 0 0 0 16 0 1700.888 Q6PK21;A0A0A0MRN5;Q05BV5;Q9NZT2;B3KMQ6;V9H0E3 Q6PK21 266 281 OGFR Opioid growth factor receptor yes no 2 0.0048415 46.592 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1731300 1731300 0 1731300 1731300 0 0 0 0 5243 389 5360 18981 28708 28708 1 IALSVSR I A S R 1 1 0 0 0 0 0 0 0 1 1 0 0 0 0 2 0 0 0 1 0 0 7 0 744.44939 REV__A0A1B0GTB2 yes yes 2 0.035702 57.463 1 0.90951 1.2325 NaN 1 Median 0.90951 1.2325 NaN 1 0 Median NaN NaN NaN 0 0 Median 44898000 25007000 19891000 44898000 25007000 19891000 0 0 0 + 5244 1843 5361 18982 28709 28709 1 IALTDNALIAR ELIYKRGYGKINKKRIALTDNALIARSLGK NKKRIALTDNALIARSLGKYGIICMEDLIH R I A A R S 3 1 1 1 0 0 0 0 0 2 2 0 0 0 0 0 1 0 0 0 0 0 11 0 1169.6768 A0A024R814;P18124;A8MUD9;O95036 A0A024R814 178 188 RPL7;WUGSC:H_RG054D04.1 60S ribosomal protein L7 yes no 2 0.0012624 71.349 2 2 0.69651 1.0472 7.2925 4 Median 0.71926 0.99268 3.486 2 0 Median 0.67343 1.1117 4.3738 2 0 Median 1480900000 872820000 608050000 1061600000 625800000 435790000 419290000 247020000 172270000 5245 189 5362 18983;18984;18985;18986 28710;28711;28712;28713;28714;28715;28716;28717 28716 8 IALYGLGSIPDER KIDISPVLLQKGSTKIALYGLGSIPDERLY TKIALYGLGSIPDERLYRMFVNKKVTMLRP K I A E R L 1 1 0 1 0 0 1 2 0 2 2 0 0 0 1 1 0 0 1 0 0 0 13 0 1402.7456 Q9BS79;F5GXT0;Q05D78;F8W7U8;A0A024R395;P49959 Q9BS79 176 188 MRE11A Double-strand break repair protein MRE11A yes no 2 0.028392 78.488 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7096200 7096200 0 1577200 1577200 0 5519000 5519000 0 5246 99 5363 18987;18988 28718;28719 28718 2 IANLAYVTK GTPAPGFSSMLYGMKIANLAYVTKTRVRFF MLYGMKIANLAYVTKTRVRFFRLDRWADVR K I A T K T 2 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 1 1 0 0 9 0 991.57023 B7Z700;Q5JR04;Q9HCE1;Q9H8T8 B7Z700 36 44 MOV10 Putative helicase MOV-10 yes no 2 0.0040542 76.827 2 0.9134 1.1757 13.614 2 Median 0.9134 1.1757 13.614 2 0 Median NaN NaN NaN 0 0 Median 8366400 4453800 3912600 8366400 4453800 3912600 0 0 0 5247 916 5364 18989;18990 28720;28721 28721 2 IANLQTDLSDGLR FTRWCNEHLKCVSKRIANLQTDLSDGLRLI KRIANLQTDLSDGLRLIALLEVLSQKKMHR R I A L R L 1 1 1 2 0 1 0 1 0 1 3 0 0 0 0 1 1 0 0 0 0 0 13 0 1414.7416 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98 P21333 64 76 FLNA Filamin-A yes no 2 7.5361E-17 175.74 3 0.8794 1.1716 5.437 3 Plateau 0.8794 1.1716 5.437 3 0 Plateau NaN NaN NaN 0 0 Median 36330000 20501000 15830000 36330000 20501000 15830000 0 0 0 5248 1287 5365 18991;18992;18993 28722;28723;28724 28722 3 IANPDQLLTQDVEK LQAFTYYKMGNLDNRIANPDQLLTQDVEKF RIANPDQLLTQDVEKFCNSVVDLYSNLSKP R I A E K F 1 0 1 2 0 2 1 0 0 1 2 1 0 0 1 0 1 0 0 1 0 0 14 0 1582.8203 B4DZ22;B4DL07;P28288 B4DZ22 109 122 ABCD3 ATP-binding cassette sub-family D member 3 yes no 2 0.016004 81.92 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1611400 1611400 0 1611400 1611400 0 0 0 0 5249 823 5366 18994 28725 28725 1 IANPVEGSSGR ANINEIRQMSGAQIKIANPVEGSSGRQVTI AQIKIANPVEGSSGRQVTITGSAASISLAQ K I A G R Q 1 1 1 0 0 0 1 2 0 1 0 0 0 0 1 2 0 0 0 1 0 0 11 0 1085.5465 Q53SS8;Q15365 Q53SS8 315 325 PCBP1 Poly(rC)-binding protein 1 yes no 2 0.00011685 92.239 2 1 0.26823 0.36661 NaN 1 Median 0.26823 0.36661 NaN 1 0 Median NaN NaN NaN 0 0 Median 39141000 31099000 8042900 39141000 31099000 8042900 0 0 0 5250 1509 5367 18995;18996;18997 28726;28727;28728 28727 3 IANPVEGSTDR AKINEIRQMSGAQIKIANPVEGSTDRQVTI AQIKIANPVEGSTDRQVTITGSAASISLAQ K I A D R Q 1 1 1 1 0 0 1 1 0 1 0 0 0 0 1 1 1 0 0 1 0 0 11 0 1157.5677 Q15366;H3BSS4;F8VRH0;H3BRU6;F8VZX2;B4DRD7 Q15366 323 333 PCBP2 Poly(rC)-binding protein 2 no no 2 0.0018019 106.2 5 2 0.3036 0.41986 NaN 1 Median 0.3036 0.41986 NaN 1 0 Median NaN NaN NaN 0 0 Median 91250000 62807000 28443000 74990000 62807000 12183000 16260000 0 16260000 5251 1510;1064 5368 18998;18999;19000;19001;19002;19003;19004 28729;28730;28731;28732;28733;28734;28735;28736 28733 8 IANQVAIQR PTVCAPYIPPQRLNRIANQVAIQRKKQFVE PQRLNRIANQVAIQRKKQFVERAHSYWLLK R I A Q R K 2 1 1 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 9 0 1011.5825 Q86X06;A0A024R4V5;B4E3L9;A0A024R4W4;O95696;B7Z926;J3KQ61;Q59G93;B4DZ41 Q86X06 460 468 BRD1 Bromodomain-containing protein 1 yes no 2 0.0049002 125.25 3 1.171 1.5831 8.7587 3 Plateau 1.171 1.5831 8.7587 3 0 Plateau NaN NaN NaN 0 0 Median 16595000 7826100 8769000 16595000 7826100 8769000 0 0 0 5252 128 5369 19005;19006;19007 28737;28738;28739 28738 2 IANVTLIDLR GCNKLTDQTLIYLRRIANVTLIDLRGCKQI IYLRRIANVTLIDLRGCKQITRKACEHFIS R I A L R G 1 1 1 1 0 0 0 0 0 2 2 0 0 0 0 0 1 0 0 1 0 0 10 0 1126.671 I3VM54;I3VM53;Q9Y2K7 I3VM54 1101 1110 KDM2A Lysine-specific demethylase 2A yes no 2 0.0090045 62.463 1 1 0.53444 0.72178 NaN 1 Median 0.53444 0.72178 NaN 1 0 Median NaN NaN NaN 0 0 Median 6769100 5530400 1238700 3379400 2140800 1238700 3389700 3389700 0 5253 1128 5370 19008;19009 28740;28741 28741 2 IANVVINQSANDSK SNDSTDGEPEEKRRKIANVVINQSANDSKV KIANVVINQSANDSKVLIDNIPDSSSLIEE K I A S K V 2 0 3 1 0 1 0 0 0 2 0 1 0 0 0 2 0 0 0 2 0 0 14 0 1471.7631 Q2M1V9;A0A0A0MTH9;O14981 Q2M1V9 249 262 BTAF1 TATA-binding protein-associated factor 172 yes no 2 0.03104 76.165 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 876030 876030 0 876030 876030 0 0 0 0 5254 405 5371 19010 28742 28742 1 IAPELYHK FITYHNELDMNLYMRIAPELYHKMLVVGGI DMNLYMRIAPELYHKMLVVGGIDRVYEIGR R I A H K M 1 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 0 0 1 0 0 0 8 0 969.52837 Q15046;Q6ZTI3 Q15046 298 305 KARS Lysine--tRNA ligase yes no 2 0.013874 65.777 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1905000 1905000 0 1905000 1905000 0 0 0 0 5255 1502 5372 19011 28743 28743 1 IAPPEAPVTGYMFGK SRTTNFAGILSQGLRIAPPEAPVTGYMFGK IAPPEAPVTGYMFGKGIYFADMVSKSANYC R I A G K G 2 0 0 0 0 0 1 2 0 1 0 1 1 1 3 0 1 0 1 1 0 0 15 0 1576.796 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 879 893 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 4.0604E-05 105.2 2 1 0.65384 0.93426 62.444 2 Median 1.1521 1.4529 NaN 1 0 Median 0.37107 0.60077 NaN 1 0 Median 65642000 32745000 32897000 18150000 4897300 13253000 47492000 27848000 19644000 5256 107 5373;5374 19012;19013;19014 28744;28745;28746;28747;28748 28746 61 5 IAPRPASGPIRPIVR RKIRRRKARQAKARRIAPRPASGPIRPIVR IAPRPASGPIRPIVRCTTVRYHTKVRAGRG R I A V R C 2 3 0 0 0 0 0 1 0 3 0 0 0 0 4 1 0 0 0 1 0 0 15 2 1598.9733 Q6NZ55;A8K4C8;P26373;J3QSB4 Q6NZ55 46 60 RPL13 60S ribosomal protein L13 yes no 3;4 4.049E-07 82.102 4 3 0.6178 0.74764 31.707 7 Median 0.69555 0.8602 15.908 4 0 Median 0.43939 0.50091 3.0332 3 0 Median 1045800000 636170000 409680000 833870000 487530000 346340000 211980000 148630000 63343000 5257 604 5375 19015;19016;19017;19018;19019;19020;19021 28749;28750;28751;28752;28753;28754;28755;28756;28757;28758 28751 10 IAPSFAVESIEDALK DRQLFSDKLNEINEKIAPSFAVESIEDALK IAPSFAVESIEDALKAADTIGYPVMIRSAY K I A L K A 3 0 0 1 0 0 2 0 0 2 1 1 0 1 1 2 0 0 0 1 0 0 15 0 1588.8348 Q5R210;Q5R208;Q5R206;A8K134;A0A024R454;P31327;Q5R209;Q5R207;B7ZAW0 Q5R210 561 575 CPS1 Carbamoyl-phosphate synthase [ammonia], mitochondrial yes no 2 1.9393E-06 122.33 2 0.49406 0.64804 11.086 2 Median 0.49406 0.64804 11.086 2 0 Median NaN NaN NaN 0 0 Median 5399200 3361300 2037900 5399200 3361300 2037900 0 0 0 5258 116 5376 19022;19023 28759;28760;28761 28759 3 IAPVHIDSEAISALVK PTNPFLEMVKFLLERIAPVHIDSEAISALV APVHIDSEAISALVKLMNKSIEGTADDEEE R I A V K L 3 0 0 1 0 0 1 0 1 3 1 1 0 0 1 2 0 0 0 2 0 0 16 0 1661.9352 G1UI16;Q29RF7 G1UI16 618 633 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 3 0.00024741 58.159 2 1 0.55476 0.73305 53.878 3 Median 0.53162 0.68769 9.0332 2 0 Median 1.1461 1.7371 NaN 1 0 Median 30577000 17296000 13281000 16668000 10262000 6405800 13909000 7033300 6875600 5259 1076 5377 19024;19025;19026 28762;28763;28764;28765 28765 4 IAPYSVEIK ILKFLCIFLEKMGQKIAPYSVEIKNTCTSV EKMGQKIAPYSVEIKNTCTSVYTKDRAAKC K I A I K N 1 0 0 0 0 0 1 0 0 2 0 1 0 0 1 1 0 0 1 1 0 0 9 0 1018.5699 P78527;B4DL41;F5GX40 P78527 100 108 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.031297 44.377 1 0.43009 0.54501 NaN 1 Median 0.43009 0.54501 NaN 1 0 Median NaN NaN NaN 0 0 Median 16328000 11069000 5259200 16328000 11069000 5259200 0 0 0 5260 1427 5378 19027 28766 28766 1 IAQGVSGSIQDK SSSQKRYFSEGDKVKIAQGVSGSIQDKGSI KVKIAQGVSGSIQDKGSIQKFVPYLIAGIQ K I A D K G 1 0 0 1 0 2 0 2 0 2 0 1 0 0 0 2 0 0 0 1 0 0 12 0 1201.6303 B4DNJ7;B3KRZ3;Q6ZNB1;Q5H9Q6;P20839;A0A024R725;C9J381 B4DNJ7 439 450 IMPDH;DKFZp781N0678;IMPDH1 Inosine-5-monophosphate dehydrogenase;Inosine-5-monophosphate dehydrogenase 1 yes no 2 0.037396 34.532 1 0.42645 0.54059 NaN 1 Median 0.42645 0.54059 NaN 1 0 Median NaN NaN NaN 0 0 Median 6030100 4376500 1653600 6030100 4376500 1653600 0 0 0 5261 772 5379 19028 28767 28767 1 IAQLEEQLDNETK VKSKYKASITALEAKIAQLEEQLDNETKER AKIAQLEEQLDNETKERQAACKQVRRTEKK K I A T K E 1 0 1 1 0 2 3 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 13 0 1529.7573 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1816 1828 MYH9;FLJ00279 Myosin-9 no no 2 2.9753E-20 198.97 6 2 1.0141 1.3172 65.964 6 Median 1.0128 1.3139 1.7691 5 0 Median 4.0912 6.6214 NaN 1 0 Median 467020000 203350000 263680000 390910000 194110000 196800000 76114000 9235800 66879000 5262 61;490 5380 19029;19030;19031;19032;19033;19034;19035;19036 28768;28769;28770;28771;28772;28773;28774;28775;28776;28777;28778;28779;28780;28781;28782;28783;28784;28785 28769 18 IAQLFSISPCQISQIYK AIYLEELTAVELTEKIAQLFSISPCQISQI QLFSISPCQISQIYKQGPTGIHVLISDEMI K I A Y K Q 1 0 0 0 1 3 0 0 0 4 1 1 0 1 1 3 0 0 1 0 0 0 17 0 1995.0499 A0A024R120;Q12800;F8VWL0;F8VX55 A0A024R120 444 460 TFCP2 Alpha-globin transcription factor CP2 yes no 2 0.0038986 72.265 1 0.60057 0.75335 NaN 1 Median 0.60057 0.75335 NaN 1 0 Median NaN NaN NaN 0 0 Median 1577600 806720 770880 1577600 806720 770880 0 0 0 5263 48 5381 19037 28786 28786 1 IAQPGDHVSVTGIFLPILR IPRSITVLVEGENTRIAQPGDHVSVTGIFL GDHVSVTGIFLPILRTGFRQVVQGLLSETY R I A L R T 1 1 0 1 0 1 0 2 1 3 2 0 0 1 2 1 1 0 0 2 0 0 19 0 2032.1469 B2RBA6;A0A0S2Z4A5;P33993;B3KUD7;B4DDF5;C6EMX8;C9J8M6 B2RBA6 264 282 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 3 8.1879E-10 109.77 5 2 0.32109 0.43622 131.81 5 Median 0.31722 0.42332 9.351 3 0 Median 3.0769 4.4933 13.225 2 0 Median 124370000 79960000 44409000 97795000 73927000 23868000 26575000 6033500 20542000 5264 464 5382 19038;19039;19040;19041;19042;19043;19044 28787;28788;28789;28790;28791;28792;28793;28794;28795;28796;28797 28793 11 IAQVSPGPR KGQGVGTGRSASKLRIAQVSPGPRDSPAFP SASKLRIAQVSPGPRDSPAFPDSPWRERVL R I A P R D 1 1 0 0 0 1 0 1 0 1 0 0 0 0 2 1 0 0 0 1 0 0 9 0 923.51886 Q9NQS7;B3KPD3 Q9NQS7 259 267 INCENP Inner centromere protein yes no 2 1.8156E-05 125.25 3 2 0.84657 1.153 27.848 5 Median 0.86318 1.1569 1.2544 3 0 Median 0.44085 0.7001 2.2568 2 0 Median 182500000 112000000 70494000 108460000 58730000 49727000 74039000 53272000 20767000 5265 1752 5383 19045;19046;19047;19048;19049 28798;28799;28800;28801;28802;28803;28804;28805 28802 8 IASGLGLAWIVGR PFLFFLAVGGVYHPRIASGLGLAWIVGRVL PRIASGLGLAWIVGRVLYAYGYYTGEPSKR R I A G R V 2 1 0 0 0 0 0 3 0 2 2 0 0 0 0 1 0 1 0 1 0 0 13 0 1311.7663 Q53GB9;A0A024R8Z1;Q5VV89;O14880;Q5VV87 Q53GB9 85 97 MGST3 Microsomal glutathione S-transferase 3 yes no 2 5.1232E-08 97.456 2 3.6038 5.0804 NaN 1 Median NaN NaN NaN 0 0 Median 3.6038 5.0804 NaN 1 0 Median 17056000 2712800 14343000 0 0 0 17056000 2712800 14343000 5266 208 5384 19050;19051 28806;28807 28807 2 IASHYYITNDTVQTYNQLLK YDKKTGNFQVTELGRIASHYYITNDTVQTY YITNDTVQTYNQLLKPTLSEIELFRVFSLS R I A L K P 1 0 2 1 0 2 0 0 1 2 2 1 0 0 0 1 3 0 3 1 0 0 20 0 2384.2012 O75643;A4FU77;Q9H8B9 O75643 987 1006 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 4.3172E-07 68.525 2 0.53417 0.67346 19.325 2 Median 0.53417 0.67346 19.325 2 0 Median NaN NaN NaN 0 0 Median 18182000 9766100 8415900 18182000 9766100 8415900 0 0 0 5267 1206 5385 19052;19053 28808;28809;28810 28809 3 IASHYYITNDTVQTYNQLLKPTLSEIELFR YDKKTGNFQVTELGRIASHYYITNDTVQTY NQLLKPTLSEIELFRVFSLSSEFKNITVRE R I A F R V 1 1 2 1 0 2 2 0 1 3 4 1 0 1 1 2 4 0 3 1 0 0 30 1 3569.8406 O75643;A4FU77 O75643 987 1016 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 4 1.7043E-09 56.172 3 0.71625 0.93212 18.737 3 Plateau 0.71625 0.93212 18.737 3 0 Plateau NaN NaN NaN 0 0 Median 23642000 13528000 10114000 23642000 13528000 10114000 0 0 0 5268 1206 5386 19054;19055;19056 28811;28812;28813;28814;28815 28814 5 IASLEVENQSLR ASSGTSGDHGELVVRIASLEVENQSLRGVV VVRIASLEVENQSLRGVVQELQQAISKLEA R I A L R G 1 1 1 0 0 1 2 0 0 1 2 0 0 0 0 2 0 0 0 1 0 0 12 0 1357.7201 E9PK01;P29692;E9PMW7;E9PPR1;E9PL12;E9PQ49;E9PI39;D3DWK1;B2RAR6;E9PRY8;E9PN91;E9PIZ1;E9PL71;H0YCK7;Q9BW34;A0A087X1X7;Q71RH4;Q9H7G6 E9PK01 84 95 EEF1D Elongation factor 1-delta yes no 2 5.3471E-32 210.64 2 2 0.3277 0.45748 NaN 1 Median 0.3277 0.45748 NaN 1 0 Median NaN NaN NaN 0 0 Median 25172000 23816000 1355700 16479000 15123000 1355700 8692600 8692600 0 5269 1035 5387 19057;19058;19059;19060 28816;28817;28818;28819 28816 4 IASLLGLLSK LEHYYKENDPSVRLKIASLLGLLSKTAGFS SVRLKIASLLGLLSKTAGFSPDCIMDDAIN K I A S K T 1 0 0 0 0 0 0 1 0 1 4 1 0 0 0 2 0 0 0 0 0 0 10 0 1013.6485 F8WAA7;A8K4A1;Q96HW7 F8WAA7 92 101 INTS4 Integrator complex subunit 4 yes no 2 0.0021044 61.56 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5270 603 5388 19061 28820 28820 1 IASPEGQDYLK RDKIIVNDRQLACARIASPEGQDYLKGMAA ACARIASPEGQDYLKGMAAAGNYAWVNRSS R I A L K G 1 0 0 1 0 1 1 1 0 1 1 1 0 0 1 1 0 0 1 0 0 0 11 0 1219.6085 Q9Y3I0;B4DNA0 Q9Y3I0 298 308 RTCB tRNA-splicing ligase RtcB homolog yes no 2 0.00058058 103.7 3 1 0.69501 0.88409 10.547 3 Plateau 0.69501 0.88409 10.547 3 0 Plateau NaN NaN NaN 0 0 Median 36421000 22646000 13775000 32760000 18985000 13775000 3661000 3661000 0 5271 1819 5389 19062;19063;19064;19065 28821;28822;28823;28824;28825;28826;28827 28826 7 IATGHGQQGVTQVVLK SGTGAPAKIITAVPKIATGHGQQGVTQVVL ATGHGQQGVTQVVLKGAPGQPGTILRTVPM K I A L K G 1 0 0 0 0 3 0 3 1 1 1 1 0 0 0 0 2 0 0 3 0 0 16 0 1634.9104 A6NEM2;P51610 A6NEM2 821 836 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 3 1.7425E-05 76.85 4 2 0.88761 1.1171 18.036 6 Median 0.84063 1.0566 8.8819 4 0 Median 0.96483 1.4388 5.0439 2 0 Median 76960000 39028000 37932000 60276000 31075000 29201000 16684000 7953000 8731200 5272 564 5390 19066;19067;19068;19069;19070;19071 28828;28829;28830;28831;28832;28833;28834;28835;28836 28831 9 IATTTASAATAAAIGATPR KASPNTRSGTRRSPRIATTTASAATAAAIG TASAATAAAIGATPRAKGKAKH________ R I A P R A 8 1 0 0 0 0 0 1 0 2 0 0 0 0 1 1 5 0 0 0 0 0 19 0 1714.9214 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q9UNL7;Q4LE64;Q14980 Q4LE64 2076 2094 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 7.5973E-31 162.67 4 2 0.5358 0.72424 19.216 6 Median 0.57499 0.76978 6.3367 4 0 Median 0.3267 0.53242 2.2834 2 0 Median 238910000 170560000 68348000 85785000 54837000 30948000 153120000 115720000 37400000 5273 148;1499 5391 19072;19073;19074;19075;19076;19077 28837;28838;28839;28840;28841;28842;28843;28844;28845;28846;28847;28848;28849 28845 13 IAVALAK I A A K 3 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 7 0 684.45341 REV__O95996 yes yes 2 0.023213 71.995 1 0.74008 0.97818 NaN 1 Median 0.74008 0.97818 NaN 1 0 Median NaN NaN NaN 0 0 Median 477830000 280010000 197820000 477830000 280010000 197820000 0 0 0 + 5274 1854 5392 19078 28850 28850 1 IAVEPVNPSELPK QIFRPLKFNTTSVIKIAVEPVNPSELPKML IKIAVEPVNPSELPKMLDGLRKVNKSYPSL K I A P K M 1 0 1 0 0 0 2 0 0 1 1 1 0 0 3 1 0 0 0 2 0 0 13 0 1391.766 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 541 553 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.00016051 94.363 3 1 0.57815 0.72034 55.17 4 Median 0.55392 0.69843 5.5972 3 0 Median 1.3842 2.1057 NaN 1 0 Median 67701000 39310000 28391000 55827000 34975000 20853000 11874000 4335300 7538700 5275 654 5393 19079;19080;19081;19082 28851;28852;28853;28854;28855;28856;28857;28858 28854 8 IAVHCTVR ARYTVRSFGIRRNEKIAVHCTVRGAKAEEI GIRRNEKIAVHCTVRGAKAEEILEKGLKVR K I A V R G 1 1 0 0 1 0 0 0 1 1 0 0 0 0 0 0 1 0 0 2 0 0 8 0 954.50692 Q5VVD0;P62913;Q5VVC8;Q08ES8;Q5VVC9 Q5VVD0 68 75 RPL11 60S ribosomal protein L11 yes no 2;3 0.00034134 129.68 7 0.75509 1.0485 24.074 7 Median 0.75509 1.0485 24.074 7 0 Median NaN NaN NaN 0 0 Median 2099600000 1142600000 957000000 2099600000 1142600000 957000000 0 0 0 5276 1416 5394 19083;19084;19085;19086;19087;19088;19089 28859;28860;28861;28862;28863;28864;28865;28866;28867;28868;28869;28870 28860 12 IAVHPDYQGMGYGSR QDPDFGGLSGGRVVRIAVHPDYQGMGYGSR IAVHPDYQGMGYGSRALQLLQMYYEGRFPC R I A S R A 1 1 0 1 0 1 0 3 1 1 0 0 1 0 1 1 0 0 2 1 0 0 15 0 1649.762 Q9H0A0;A0A087WV29 Q9H0A0 629 643 NAT10 N-acetyltransferase 10 yes no 3 5.2062E-06 72.615 2 1 0.68173 0.9433 2.9723 3 Median 0.69642 0.9362 1.0678 2 0 Median 0.61456 0.984 NaN 1 0 Median 75413000 43941000 31472000 12837000 6678800 6158000 62576000 37262000 25314000 5277 1730 5395;5396 19090;19091;19092 28871;28872;28873;28874;28875 28875 788 5 IAVMELFRPK AEGLRPVKEVGMYGKIAVMELFRPKGESKD GMYGKIAVMELFRPKGESKDLLFILTAKYN K I A P K G 1 1 0 0 0 0 1 0 0 1 1 1 1 1 1 0 0 0 0 1 0 0 10 1 1202.6845 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5;F5H2L3;F5GWI0;F5GZY8;F5GYG8;F5H198 Q16531 61 70 DDB1 DNA damage-binding protein 1 yes no 3 0.011061 76.17 3 0.76809 1.0163 18.247 3 Median 0.76809 1.0163 18.247 3 0 Median NaN NaN NaN 0 0 Median 13193000 8009500 5183400 13193000 8009500 5183400 0 0 0 5278 1520 5397 19093;19094;19095 28876;28877;28878;28879 28878 4 IAVYHLQELASAELAK LESKSGGRVQRRSAKIAVYHLQELASAELA AVYHLQELASAELAKEWPKRKVLQDLVPDD K I A A K E 4 0 0 0 0 1 2 0 1 1 3 1 0 0 0 1 0 0 1 1 0 0 16 0 1754.9567 B4DES6;B7Z9P6;G3XAG1;Q96ME7;Q658M0;B4E0X7 B4DES6 240 255 ZNF512;DKFZp666L156 Zinc finger protein 512 yes no 3 1.0214E-13 142.54 3 2 0.60675 0.87818 18.6 5 Median 0.71799 0.87818 25.68 3 0 Median 0.59262 0.88834 5.1024 2 0 Median 62388000 36265000 26123000 39031000 21072000 17960000 23357000 15194000 8163300 5279 799 5398 19096;19097;19098;19099;19100 28880;28881;28882;28883;28884;28885;28886;28887;28888;28889;28890 28881 11 IAYQLAVEAESEQK PEHRFELALQLGELKIAYQLAVEAESEQKW KIAYQLAVEAESEQKWKQLAELAISKCQFG K I A Q K W 3 0 0 0 0 2 3 0 0 1 1 1 0 0 0 1 0 0 1 1 0 0 14 0 1577.7937 P35606 P35606 656 669 COPB2 Coatomer subunit beta yes yes 2 2.3551E-08 131.17 5 0.51516 0.64413 NaN 1 Median 0.51516 0.64413 NaN 1 0 Median NaN NaN NaN 0 0 Median 10232000 8762200 1470300 10232000 8762200 1470300 0 0 0 5280 1321 5399 19101;19102;19103;19104;19105 28891;28892;28893;28894;28895 28891 5 ICDETANATSTLK KDFQHLISSPLKKSRICDETANATSTLKKR SRICDETANATSTLKKRKKRRYSALEVDEE R I C L K K 2 0 1 1 1 0 1 0 0 1 1 1 0 0 0 1 3 0 0 0 0 0 13 0 1422.6661 B4DZG2;A0A024R8C1;Q15361 B4DZG2 72 84 TTF1 Transcription termination factor 1 yes no 2 0.00031929 121.61 4 0.74974 0.95332 7.9604 3 Plateau 0.74974 0.95332 7.9604 3 0 Plateau NaN NaN NaN 0 0 Median 10712000 6572400 4139700 10712000 6572400 4139700 0 0 0 5281 195 5400 19106;19107;19108;19109 28896;28897;28898;28899 28896 4 ICDGVQFGAGIR ELNYCVPMGVQTGDRICDGVQFGAGIRFL_ GDRICDGVQFGAGIRFL_____________ R I C I R F 1 1 0 1 1 1 0 3 0 2 0 0 0 1 0 0 0 0 0 1 0 0 12 0 1291.6343 Q9Y512;B4DN54;B3KUE6 Q9Y512 456 467 SAMM50 Sorting and assembly machinery component 50 homolog yes no 2 0.0011336 65.347 1 0.34662 0.4622 NaN 1 Median 0.34662 0.4622 NaN 1 0 Median NaN NaN NaN 0 0 Median 6162200 4067200 2095000 6162200 4067200 2095000 0 0 0 5282 1827 5401 19110 28900 28900 1 ICDQISDAVLDAHLQQDPDAK FLFTSESVGEGHPDKICDQISDAVLDAHLQ DAVLDAHLQQDPDAKVACETVAKTGMILLA K I C A K V 3 0 0 5 1 3 0 0 1 2 2 1 0 0 1 1 0 0 0 1 0 0 21 0 2351.1063 B4DEX8;A0A140VJP5;P31153 B4DEX8 33 53 MAT2A S-adenosylmethionine synthase;S-adenosylmethionine synthase isoform type-2 yes no 3 1.0357E-08 104.38 3 0.36883 0.46049 4.9454 3 Plateau 0.36883 0.46049 4.9454 3 0 Plateau NaN NaN NaN 0 0 Median 71765000 51413000 20352000 71765000 51413000 20352000 0 0 0 5283 501 5402 19111;19112;19113 28901;28902;28903;28904;28905;28906 28901 6 ICDVYNAVMDVVK QLQEELLKELRHGVKICDVYNAVMDVVKKQ VKICDVYNAVMDVVKKQKPELLNKITKNLG K I C V K K 1 0 1 2 1 0 0 0 0 1 0 1 1 0 0 0 0 0 1 4 0 0 13 0 1524.7316 Q9Y5B9;Q0VGA3 Q9Y5B9 322 334 SUPT16H FACT complex subunit SPT16 yes no 2 7.3235E-05 79.659 1 0.75098 0.95186 NaN 1 Median 0.75098 0.95186 NaN 1 0 Median NaN NaN NaN 0 0 Median 11408000 7259400 4148400 11408000 7259400 4148400 0 0 0 5284 1829 5403 19114 28907 28907 1 ICDVYNAVMDVVKK QLQEELLKELRHGVKICDVYNAVMDVVKKQ KICDVYNAVMDVVKKQKPELLNKITKNLGF K I C K K Q 1 0 1 2 1 0 0 0 0 1 0 2 1 0 0 0 0 0 1 4 0 0 14 1 1652.8266 Q9Y5B9;Q0VGA3 Q9Y5B9 322 335 SUPT16H FACT complex subunit SPT16 yes no 3 2.2523E-05 103.3 4 0.76787 0.95653 7.3263 3 Median 0.76787 0.95653 7.3263 3 0 Median NaN NaN NaN 0 0 Median 24511000 13580000 10931000 24511000 13580000 10931000 0 0 0 5285 1829 5404 19115;19116;19117;19118 28908;28909;28910;28911 28908 4 ICDYLFNVSDSSALNLAK EDPLEFLDMAEIKEKICDYLFNVSDSSALN YLFNVSDSSALNLAKNIGLTKARDINAVLI K I C A K N 2 0 2 2 1 0 0 0 0 1 3 1 0 1 0 3 0 0 1 1 0 0 18 0 2028.9826 Q59EC0;D3DV75;H0YCK3;A0A024DAK3;P55265;B7Z8Y3 Q59EC0 321 338 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 2.7105E-06 115.37 3 0.80627 1.0576 NaN 1 Median 0.80627 1.0576 NaN 1 0 Median NaN NaN NaN 0 0 Median 8784800 6769300 2015400 8784800 6769300 2015400 0 0 0 5286 1552 5405 19119;19120;19121 28912;28913;28914;28915 28915 4 ICEEETGSTSIQAADSTAVNGSITPTDKK EKPAVCYQAITKKLKICEEETGSTSIQAAD DSTAVNGSITPTDKKIGFLGLGLMGSGIVS K I C K K I 3 0 1 2 1 1 3 2 0 3 0 2 0 0 1 4 5 0 0 1 0 0 29 1 3009.4085 Q49A26;D3DUE7;K7EPU6 Q49A26 241 269 GLYR1;N-PAC Putative oxidoreductase GLYR1 yes no 3 0.00010227 80.453 4 0.72607 0.89224 NaN 1 Median 0.72607 0.89224 NaN 1 0 Median NaN NaN NaN 0 0 Median 11089000 6164400 4924600 11089000 6164400 4924600 0 0 0 5287 1533 5406 19122;19123;19124;19125 28916;28917;28918;28919 28918 4 ICEVRPCGQPVYSSLK VTNDNPECRLVKETRICEVRPCGQPVYSSL CEVRPCGQPVYSSLKKGKKCSKTKKSPEPV R I C L K K 0 1 0 0 2 1 1 1 0 1 1 1 0 0 2 2 0 0 1 2 0 0 16 1 1891.9284 Q6FI18;O00622;B4DI61;Q53FA4;Q9UID7 Q6FI18 266 281 CYR61 Protein CYR61 yes no 3 5.3224E-07 95.236 4 1 1.5709 2.1778 6.1643 5 Median 1.6025 2.1147 6 4 0 Median 1.5357 2.2675 NaN 1 0 Median 88814000 32413000 56401000 84821000 30976000 53845000 3993400 1437300 2556100 5288 1168 5407 19126;19127;19128;19129;19130 28920;28921;28922;28923;28924;28925;28926;28927;28928 28925 9 ICGDIHGQYTDLLR FLSQPILLELEAPLKICGDIHGQYTDLLRL KICGDIHGQYTDLLRLFEYGGFPPEANYLF K I C L R L 0 1 0 2 1 1 0 2 1 2 2 0 0 0 0 0 1 0 1 0 0 0 14 0 1659.8039 V9HW04;P62140;B4DJ75;B7ZB67;E7ETD8;C9J9S3;C9JP48;B4E163 V9HW04 60 73 HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes no 2;3 1.0576E-14 124.47 7 2 0.9178 1.2701 2.5576 6 Median 0.94082 1.2934 3.1832 4 0 Median 0.79414 1.27 0.1181 2 0 Median 484740000 255580000 229150000 402180000 208520000 193660000 82555000 47064000 35491000 5289 1397 5408 19131;19132;19133;19134;19135;19136;19137;19138;19139 28929;28930;28931;28932;28933;28934;28935;28936;28937;28938;28939;28940;28941;28942;28943 28940 15 ICGDIHGQYYDLLR FLSQPILLELEAPLKICGDIHGQYYDLLRL KICGDIHGQYYDLLRLFEYGGFPPESNYLF K I C L R L 0 1 0 2 1 1 0 2 1 2 2 0 0 0 0 0 0 0 2 0 0 0 14 0 1721.8195 A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;A0A087WYY5;P62136;A0A140VJS9;B3KXM2;E9PMD7;F5H1L6;F5H037 P62136 61 74 PPP1CC;PPP1CA Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit no no 2;3 4.2003E-06 116.63 6 2 0.89213 1.212 29.025 8 Median 0.90096 1.2264 34.073 6 0 Median 0.6561 1.0279 0.53872 2 0 Median 277980000 149700000 128280000 220090000 114990000 105100000 57889000 34713000 23175000 5290 1396;279 5409 19140;19141;19142;19143;19144;19145;19146;19147 28944;28945;28946;28947;28948;28949;28950;28951;28952;28953;28954;28955;28956;28957;28958 28944 15 ICNEILTSPCSPEIR QDYQALTVHDNLAMKICNEILTSPCSPEIR ICNEILTSPCSPEIRVYTKALSSLELSSHL K I C I R V 0 1 1 0 2 0 2 0 0 3 1 0 0 0 2 2 1 0 0 0 0 0 15 0 1787.8546 Q9BPX3;Q6NUR1 Q9BPX3 834 848 NCAPG Condensin complex subunit 3 yes no 2 6.9008E-22 177.81 4 2 0.64513 0.86748 34.013 6 Median 0.67012 0.90649 4.8959 4 0 Median 0.30527 0.46571 3.6119 2 0 Median 156190000 99256000 56935000 118300000 69267000 49032000 37891000 29989000 7902400 5291 1706 5410 19148;19149;19150;19151;19152;19153 28959;28960;28961;28962;28963;28964;28965;28966;28967;28968;28969 28961 11 ICPVEFNPNFVAR GSRGFPLRLQATEVRICPVEFNPNFVARMI VRICPVEFNPNFVARMIPKVEWSAFLEAAD R I C A R M 1 1 2 0 1 0 1 0 0 1 0 0 0 2 2 0 0 0 0 2 0 0 13 0 1561.7711 F5GX77;A0A024R565;Q9UI30 F5GX77 32 44 TRMT112;HSPC152 Multifunctional methyltransferase subunit TRM112-like protein yes no 2 0.0015245 59.757 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5701300 5701300 0 5701300 5701300 0 0 0 0 5292 134 5411 19154 28970 28970 1 ICQADIVEAVDIASAAK EPGFLEGEDGEDTAKICQADIVEAVDIASA QADIVEAVDIASAAKHFDLNLRQFGPYRLN K I C A K H 5 0 0 2 1 1 1 0 0 3 0 1 0 0 0 1 0 0 0 2 0 0 17 0 1772.8978 B0UZZ8;B4DNI0;O15213;B4DP15;A8K9A1;A8K806;A0A140T9L0;A0A0G2JJL1;H0Y6G3 B0UZZ8 171 187 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2 6.4958E-34 185.32 4 0.82461 1.0434 5.6496 2 Median 0.82461 1.0434 5.6496 2 0 Median NaN NaN NaN 0 0 Median 68627000 36728000 31899000 68627000 36728000 31899000 0 0 0 5293 668 5412 19155;19156;19157;19158 28971;28972;28973;28974;28975;28976 28973 6 ICRDPQTPVLQTK KDDINLLPSKSSVTKICRDPQTPVLQTKHR TKICRDPQTPVLQTKHRARAVTCKSTAELE K I C T K H 0 1 0 1 1 2 0 0 0 1 1 1 0 0 2 0 2 0 0 1 0 0 13 1 1554.8188 Q643R0;Q9ULW0;B3KM90 Q643R0 363 375 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2;3 2.9107E-27 184.87 4 1 0.74509 0.98921 10.57 4 Median 0.77146 1.0272 7.39 3 0 Median 0.55808 0.86267 NaN 1 0 Median 89988000 49837000 40151000 80900000 43358000 37542000 9088000 6478700 2609400 5294 1581 5413 19159;19160;19161;19162;19163 28977;28978;28979;28980;28981;28982;28983;28984 28979 8 ICTGQVPSAEDEPAPK TTSQHRAHLFDLNCKICTGQVPSAEDEPAP CTGQVPSAEDEPAPKKQKLSASVKKEDLKS K I C P K K 2 0 0 1 1 1 2 1 0 1 0 1 0 0 3 1 1 0 0 1 0 0 16 0 1697.7931 Q9BTC0 Q9BTC0 855 870 DIDO1 Death-inducer obliterator 1 yes yes 2 2.4639E-05 122.33 4 2 0.8172 1.0905 36.297 6 Median 0.91061 1.1724 42.389 4 0 Median 0.69606 1.0045 5.4993 2 0 Median 29927000 15864000 14064000 17960000 9118200 8841900 11967000 6745400 5221700 5295 1713 5414 19164;19165;19166;19167;19168;19169 28985;28986;28987;28988;28989;28990;28991 28986 5 ICTICNELFPENVYSVHFEK TGPPPGNTSSTQKWKICTICNELFPENVYS NELFPENVYSVHFEKGHKAEKVPAVANYIM K I C E K G 0 0 2 0 2 0 3 0 1 2 1 1 0 2 1 1 1 0 1 2 0 0 20 0 2498.161 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 448 467 ADNP Activity-dependent neuroprotector homeobox protein yes no 3 3.3661E-07 97.621 3 0.78959 0.97546 4.7917 3 Plateau 0.78959 0.97546 4.7917 3 0 Plateau NaN NaN NaN 0 0 Median 49683000 29544000 20138000 49683000 29544000 20138000 0 0 0 5296 729 5415 19170;19171;19172 28992;28993;28994;28995;28996 28996 5 ICYQEVSQCFGVLSSR KLHIRTVPLYESPRKICYQEVSQCFGVLSS CYQEVSQCFGVLSSRIEVQDTSGGTTALRP K I C S R I 0 1 0 0 2 2 1 1 0 1 1 0 0 1 0 3 0 0 1 2 0 0 16 0 1931.887 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 724 739 DDB1 DNA damage-binding protein 1 yes no 2 4.0348E-50 208.51 4 2 0.78383 1.0644 50.032 6 Median 0.80949 1.0929 2.7323 4 0 Median 0.29092 0.41055 1.593 2 0 Median 146950000 86244000 60701000 125110000 70123000 54983000 21840000 16121000 5718400 5297 1520 5416 19173;19174;19175;19176;19177;19178 28997;28998;28999;29000;29001;29002;29003;29004;29005 28998 9 IDAELVLPTIR KPTNLGIVLVHGYYKIDAELVLPTIRSAVE GYYKIDAELVLPTIRSAVEKQLNLIAQGKA K I D I R S 1 1 0 1 0 0 1 0 0 2 2 0 0 0 1 0 1 0 0 1 0 0 11 0 1238.7234 B3KU89;H0Y6W0;A8K4N2;A0A024R1C2;O95985 B3KU89 96 106 TOP3B DNA topoisomerase;DNA topoisomerase 3-beta-1 yes no 2 0.00019538 110.53 2 0.75979 1.055 11.735 2 Median 0.75979 1.055 11.735 2 0 Median NaN NaN NaN 0 0 Median 5800000 3675400 2124600 5800000 3675400 2124600 0 0 0 5298 56 5417 19179;19180 29006;29007 29007 1 IDASELSFPFHESILK TTLGLEVAKQSQHDKIDASELSFPFHESIL DASELSFPFHESILKVIEEEWQQVDRQLPS K I D L K V 1 0 0 1 0 0 2 0 1 2 2 1 0 2 1 3 0 0 0 0 0 0 16 0 1831.9356 P42166 P42166 485 500 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 3 0.0065439 57.788 2 0.32224 0.39848 15.485 2 Median 0.32224 0.39848 15.485 2 0 Median NaN NaN NaN 0 0 Median 28046000 20384000 7662200 28046000 20384000 7662200 0 0 0 5299 1335 5418 19181;19182 29008;29009 29008 2 IDCDNLEQYFIQQGGGPDK KEHKMDQAIIFCRTKIDCDNLEQYFIQQGG NLEQYFIQQGGGPDKKGHQFSCVCLHGDRK K I D D K K 0 0 1 3 1 3 1 3 0 2 1 1 0 1 1 0 0 0 1 0 0 0 19 0 2195.9793 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 436 454 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 6.0815E-40 181.75 4 0.73498 0.93782 10.376 4 Median 0.73498 0.93782 10.376 4 0 Median NaN NaN NaN 0 0 Median 26551000 15140000 11411000 26551000 15140000 11411000 0 0 0 5300 378 5419 19183;19184;19185;19186 29010;29011;29012;29013;29014;29015;29016;29017 29013 8 IDCDNLEQYFIQQGGGPDKK KEHKMDQAIIFCRTKIDCDNLEQYFIQQGG LEQYFIQQGGGPDKKGHQFSCVCLHGDRKP K I D K K G 0 0 1 3 1 3 1 3 0 2 1 2 0 1 1 0 0 0 1 0 0 0 20 1 2324.0743 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 436 455 DDX1 ATP-dependent RNA helicase DDX1 yes no 3 3.355E-16 129.98 3 0.82231 1.0175 6.7539 3 Plateau 0.82231 1.0175 6.7539 3 0 Plateau NaN NaN NaN 0 0 Median 44544000 23895000 20648000 44544000 23895000 20648000 0 0 0 5301 378 5420 19187;19188;19189 29018;29019;29020;29021 29019 4 IDCFSEVPTSVFGEK RISRYLANKCSIASRIDCFSEVPTSVFGEK IDCFSEVPTSVFGEKLREQVEERLSFYETG R I D E K L 0 0 0 1 1 0 2 1 0 1 0 1 0 2 1 2 1 0 0 2 0 0 15 0 1713.792 A8K9K6;O00567;A0PJ92;H0YDU4;H0Y653 A8K9K6 382 396 NOP56 Nucleolar protein 56 yes no 2 8.4805E-34 202 4 2 0.70957 0.92314 9.051 6 Median 0.71761 0.9337 2.0175 4 0 Median 0.49912 0.79049 4.0305 2 0 Median 571810000 354090000 217720000 390440000 229440000 161000000 181370000 124660000 56714000 5302 647 5421 19190;19191;19192;19193;19194;19195 29022;29023;29024;29025;29026;29027;29028;29029;29030;29031;29032;29033;29034 29024 13 IDDINVTQK REFRPEIPCIVVANKIDDINVTQKSFNFAK IVVANKIDDINVTQKSFNFAKKFSLPLYFV K I D Q K S 0 0 1 2 0 1 0 0 0 2 0 1 0 0 0 0 1 0 0 1 0 0 9 0 1044.5451 A0A0S2SW46;Q9UNT1;Q9UBK7 A0A0S2SW46 135 143 RABL2B;RABL2A Rab-like protein 2B;Rab-like protein 2A yes no 2 0.025866 48.283 1 2.0124 2.4678 NaN 1 Median 2.0124 2.4678 NaN 1 0 Median NaN NaN NaN 0 0 Median 23394000 8286900 15107000 23394000 8286900 15107000 0 0 0 5303 448 5422 19196 29035 29035 1 IDDPIDEEEEFEELK VPASVKVLRRSNRKKIDDPIDEEEEFEELK IDDPIDEEEEFEELKGSEPHMRTRNQGRRT K I D L K G 0 0 0 3 0 0 6 0 0 2 1 1 0 1 1 0 0 0 0 0 0 0 15 0 1848.8153 Q8WWQ0;Q9NWP3 Q8WWQ0 1746 1760 PHIP PH-interacting protein yes no 2 1.7772E-10 149.23 2 0.71405 0.90025 NaN 1 Median 0.71405 0.90025 NaN 1 0 Median NaN NaN NaN 0 0 Median 4025000 2899800 1125200 4025000 2899800 1125200 0 0 0 5304 1668 5423 19197;19198 29036;29037 29037 2 IDEAESLNDEELEEK ELPNAAQAQKEEQLKIDEAESLNDEELEEK IDEAESLNDEELEEKEKLLTQGFTNWNKRD K I D E K E 1 0 1 2 0 0 6 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 15 0 1761.7792 O60264;B7ZAX9;B4DZC0 O60264 820 834 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 1.9701E-61 270.02 5 2 2.2733 3.1751 12.968 6 Median 2.331 3.0066 9.8491 4 0 Median 2.2733 3.5951 3.4676 2 0 Median 472730000 139760000 332960000 229020000 64490000 164530000 243710000 75272000 168440000 5305 1189 5424 19199;19200;19201;19202;19203;19204;19205 29038;29039;29040;29041;29042;29043;29044;29045;29046;29047;29048;29049;29050;29051;29052 29041 15 IDEPLEGSEDR QRIKQIRHESGASIKIDEPLEGSEDRIITI ASIKIDEPLEGSEDRIITITGTQDQIQNAQ K I D D R I 0 1 0 2 0 0 3 1 0 1 1 0 0 0 1 1 0 0 0 0 0 0 11 0 1258.5677 A0A024R228;P61978;B4DUQ1;Q5EC54;B4DFF1;B3KU16;S4R359 A0A024R228 423 433 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 2 3.2502E-07 147.75 3 0.51501 0.70092 4.8201 3 Median 0.51501 0.70092 4.8201 3 0 Median NaN NaN NaN 0 0 Median 21198000 14014000 7184000 21198000 14014000 7184000 0 0 0 5306 77 5425 19206;19207;19208 29053;29054;29055;29056;29057 29054 5 IDFADTVTK EEHPELQQFVGKREKIDFADTVTKYDRRFK VGKREKIDFADTVTKYDRRFKGVKRDLLLT K I D T K Y 1 0 0 2 0 0 0 0 0 1 0 1 0 1 0 0 2 0 0 1 0 0 9 0 1008.5128 Q4KMR3;Q12965;H0YNQ8 Q4KMR3 764 772 MYO1E Unconventional myosin-Ie yes no 2 0.016912 56.432 2 0.83997 1.0659 NaN 1 Median 0.83997 1.0659 NaN 1 0 Median NaN NaN NaN 0 0 Median 15135000 11985000 3150200 15135000 11985000 3150200 0 0 0 5307 1459 5426 19209;19210 29058;29059 29059 2 IDFGEAAR IQSIIAIIRAMGRLKIDFGEAARADDARQL RAMGRLKIDFGEAARADDARQLFVLAGSAE K I D A R A 2 1 0 1 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 8 0 877.42938 P08754 P08754 93 100 GNAI3 Guanine nucleotide-binding protein G(k) subunit alpha yes yes 2 0.0075674 80.229 1 0.68604 0.94961 NaN 1 Median 0.68604 0.94961 NaN 1 0 Median NaN NaN NaN 0 0 Median 4936200 3006100 1930100 4936200 3006100 1930100 0 0 0 5308 1246 5427 19211 29060 29060 1 IDGNLDYRDHEK QGKTEEFVKLLEAARIDGNLDYRDHEKDQM AARIDGNLDYRDHEKDQMTCLDTLAAYYVQ R I D E K D 0 1 1 3 0 0 1 1 1 1 1 1 0 0 0 0 0 0 1 0 0 0 12 1 1473.6848 A8K6X9;Q6PD62;H0YCE8 A8K6X9 69 80 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2;3 0.00034427 120.63 4 0.73372 0.96841 11.13 3 Plateau 0.73372 0.96841 11.13 3 0 Plateau NaN NaN NaN 0 0 Median 72507000 40024000 32483000 72507000 40024000 32483000 0 0 0 5309 629 5428 19212;19213;19214;19215 29061;29062;29063;29064 29064 4 IDGNLVVRPYTPISSDDDK ILGLPVGQHIYLSARIDGNLVVRPYTPISS LVVRPYTPISSDDDKGFVDLVIKVYFKDTH R I D D K G 0 1 1 4 0 0 0 1 0 2 1 1 0 0 2 2 1 0 1 2 0 0 19 1 2103.0484 A0A024R4X0;P00387;B1AHF3;Q6ZVI6 A0A024R4X0 75 93 CYB5R3 NADH-cytochrome b5 reductase;NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 3 5.9245E-05 88.565 2 0.63527 0.84571 NaN 1 Median 0.63527 0.84571 NaN 1 0 Median NaN NaN NaN 0 0 Median 21280000 16660000 4620100 21280000 16660000 4620100 0 0 0 5310 129 5429 19216;19217 29065;29066;29067 29065 3 IDGSLVIRPYTPVTSDEDQGYVDLVIK TLGLPVGKHIYLSTRIDGSLVIRPYTPVTS VTSDEDQGYVDLVIKVYLKGVHPKFPEGGK R I D I K V 0 1 0 4 0 1 1 2 0 3 2 1 0 0 2 2 2 0 2 4 0 0 27 1 2991.5441 H7C0R7;Q9UHQ9 H7C0R7 21 47 CYB5R1 NADH-cytochrome b5 reductase 1 yes no 3 5.9063E-07 48.759 2 0.44478 0.57743 NaN 1 Median 0.44478 0.57743 NaN 1 0 Median NaN NaN NaN 0 0 Median 24352000 19162000 5190200 24352000 19162000 5190200 0 0 0 5311 1122 5430 19218;19219 29068;29069;29070 29069 3 IDGVFAACQSGSFDK EKVITDIAGVIPAEKIDGVFAACQSGSFDK IDGVFAACQSGSFDKLEAVVKDLIDEGHAA K I D D K L 2 0 0 2 1 1 0 2 0 1 0 1 0 2 0 2 0 0 0 1 0 0 15 0 1600.7192 P35249;H7C1P0 P35249 274 288 RFC4 Replication factor C subunit 4 yes no 2 0.0031401 53.528 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1321000 1321000 0 1321000 1321000 0 0 0 0 5312 1317 5431 19220 29071 29071 1 IDGVSLLVQR LPDKHSLAFVVRIERIDGVSLLVQRTIARL VRIERIDGVSLLVQRTIARLRLKKIFSGVF R I D Q R T 0 1 0 1 0 1 0 1 0 1 2 0 0 0 0 1 0 0 0 2 0 0 10 0 1098.6397 A0A024RD36;Q6DKI1;R4GMU7;B7Z4G0 A0A024RD36 105 114 RPL7L1 60S ribosomal protein L7-like 1 yes no 2 0.00042607 123.35 7 2 0.78013 1.0403 22.328 5 Median 0.86395 1.1957 7.0621 3 0 Plateau 0.53289 0.75488 1.2792 2 0 Median 104850000 53192000 51654000 87325000 42243000 45082000 17521000 10949000 6572500 5313 311 5432 19221;19222;19223;19224;19225;19226;19227;19228;19229 29072;29073;29074;29075;29076;29077;29078;29079;29080;29081;29082;29083;29084 29072 13 IDIDPEETVK ______________________________ QQTFKIDIDPEETVKALKEKIESEKGKDAF K I D V K A 0 0 0 2 0 0 2 0 0 2 0 1 0 0 1 0 1 0 0 1 0 0 10 0 1157.5816 P54727;Q53F10;B4DEA3;Q5W0S5 P54727 15 24 RAD23B UV excision repair protein RAD23 homolog B yes no 2 0.00075704 106.18 3 2 0.77653 1.0348 2.5571 5 Median 0.79773 1.0054 2.4902 3 0 Median 0.66193 1.0427 0.3387 2 0 Median 123540000 70388000 53156000 61377000 33517000 27860000 62168000 36871000 25296000 5314 1374 5433 19230;19231;19232;19233;19234 29085;29086;29087;29088;29089;29090;29091;29092 29090 8 IDIIPNPQER SLTDPSKLDSGKELKIDIIPNPQERTLTLV GKELKIDIIPNPQERTLTLVDTGIGMTKAD K I D E R T 0 1 1 1 0 1 1 0 0 3 0 0 0 0 2 0 0 0 0 0 0 0 10 0 1193.6404 A0A024RD80;P08238;B4DMA2;B4DGL0;Q6PK50;Q58FF7;O14942 A0A024RD80 73 82 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 2 0.00038132 115.71 3 2 0.46233 0.64414 136.66 5 Median 0.45362 0.62306 4.983 3 0 Median 4.591 7.4656 4.3822 2 0 Median 357690000 175330000 182360000 220780000 151030000 69747000 136910000 24297000 112610000 5315 312 5434 19235;19236;19237;19238;19239 29093;29094;29095;29096;29097;29098;29099;29100;29101;29102 29095 10 IDILDSALLRPGR FEATKNIKVIMATNRIDILDSALLRPGRID NRIDILDSALLRPGRIDRKIEFPPPNEEAR R I D G R I 1 2 0 2 0 0 0 1 0 2 3 0 0 0 1 1 0 0 0 0 0 0 13 1 1437.8304 Q59GS3;A0A140VJS3;P62195 Q59GS3 294 306 PSMC5 26S protease regulatory subunit 8 yes no 3 0.0050185 38.634 1 2 1.4768 2.0126 202.31 2 Median 0.37025 0.48137 NaN 1 0 Median 5.8904 8.4148 NaN 1 0 Median 21651000 8045000 13607000 8266500 6480800 1785700 13385000 1564200 11821000 5316 503 5435 19240;19241;19242 29103;29104;29105 29103 3 IDILTELR VDSYATQLEAILEQKIDILTELRDKVKSFR EAILEQKIDILTELRDKVKSFRAALQEEEQ K I D L R D 0 1 0 1 0 0 1 0 0 2 2 0 0 0 0 0 1 0 0 0 0 0 8 0 971.56515 B0AZS5;O00139;B4DM85 B0AZS5 625 632 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A no no 2 0.00017822 139.68 5 0.88356 1.209 NaN 1 Median 0.88356 1.209 NaN 1 0 Median NaN NaN NaN 0 0 Median 9576600 4417300 5159400 9576600 4417300 5159400 0 0 0 5317 664;1163 5436 19243;19244;19245;19246;19247 29106;29107;29108;29109;29110;29111 29108 6 IDILTELRDK VDSYATQLEAILEQKIDILTELRDKVKSFR ILEQKIDILTELRDKVKSFRAALQEEEQAS K I D D K V 0 1 0 2 0 0 1 0 0 2 2 1 0 0 0 0 1 0 0 0 0 0 10 1 1214.6871 B0AZS5;O00139;B4DM85 B0AZS5 625 634 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A no no 3 0.009559 42.001 1 0.96325 1.2416 NaN 1 Median 0.96325 1.2416 NaN 1 0 Median NaN NaN NaN 0 0 Median 4355500 2235900 2119600 4355500 2235900 2119600 0 0 0 5318 664;1163 5437 19248 29112 29112 1 IDISAVVAYTIAVK MKSWNDCLNKEGFDKIDISAVVAYTIAVKE KIDISAVVAYTIAVKEDGELNLMKKAASIT K I D V K E 3 0 0 1 0 0 0 0 0 3 0 1 0 0 0 1 1 0 1 3 0 0 14 0 1461.8443 Q9Y5B9;Q0VGA3 Q9Y5B9 162 175 SUPT16H FACT complex subunit SPT16 yes no 2 1.0498E-32 194.48 9 1 0.82875 1.0654 22.008 8 Median 0.84007 1.0949 22.956 7 0 Median 0.63256 0.93268 NaN 1 0 Median 483540000 255220000 228330000 474610000 249920000 224680000 8936700 5293400 3643300 5319 1829 5438 19249;19250;19251;19252;19253;19254;19255;19256;19257;19258 29113;29114;29115;29116;29117;29118;29119;29120;29121;29122;29123;29124;29125;29126;29127 29114 15 IDISNVK LRRTHQKFVIATSTKIDISNVKIPKHLTDA FVIATSTKIDISNVKIPKHLTDAYFKKKKL K I D V K I 0 0 1 1 0 0 0 0 0 2 0 1 0 0 0 1 0 0 0 1 0 0 7 0 787.44397 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3 Q8TBK5 201 207 RPL6 60S ribosomal protein L6 yes no 1;2 0.01508 168.45 6 0.77578 1.0303 6.3103 5 Median 0.77578 1.0303 6.3103 5 0 Median NaN NaN NaN 0 0 Median 1606800000 861820000 744980000 1606800000 861820000 744980000 0 0 0 5320 277 5439 19259;19260;19261;19262;19263;19264 29128;29129;29130;29131;29132;29133;29134 29132 7 IDISPAPENPHYCLTPELLQVK SSVLRRLRPITAQLKIDISPAPENPHYCLT ENPHYCLTPELLQVKLYPDSRVRPTREILE K I D V K L 1 0 1 1 1 1 2 0 1 2 3 1 0 0 4 1 1 0 1 1 0 0 22 0 2533.2887 Q96N67;A0A1B0GUE9 Q96N67 511 532 DOCK7 Dedicator of cytokinesis protein 7 yes no 3 0.0020967 28.813 1 0.90236 1.1459 NaN 1 Median 0.90236 1.1459 NaN 1 0 Median NaN NaN NaN 0 0 Median 9812300 5171100 4641200 9812300 5171100 4641200 0 0 0 5321 1696 5440 19265 29135 29135 1 IDISQLVITK VAHAQDVISDLLCNRIDISQLVITKELTRA LLCNRIDISQLVITKELTRAASDYAGKQAH R I D T K E 0 0 0 1 0 1 0 0 0 3 1 1 0 0 0 1 1 0 0 1 0 0 10 0 1128.6754 A0A024R4F4;Q308M6;M0R2B7;P28340;M0QZR8;Q59FA0;M0QXE6;M0QXQ2 A0A024R4F4 876 885 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 2 0.006167 91.265 1 0.26225 0.34484 NaN 1 Median 0.26225 0.34484 NaN 1 0 Median NaN NaN NaN 0 0 Median 2272800 1937300 335500 2272800 1937300 335500 0 0 0 5322 123 5441 19266 29136 29136 1 IDIYQLDTASISGTITNEK WSPRGEQYVVIIQNKIDIYQLDTASISGTI QLDTASISGTITNEKRISSVKFLSESVLAV K I D E K R 1 0 1 2 0 1 1 1 0 4 1 1 0 0 0 2 3 0 1 0 0 0 19 0 2081.0528 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 187 205 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 2 1.9958E-97 255.72 4 1 1.1234 1.4181 2.6306 4 Median 1.1234 1.4181 2.6306 4 0 Median NaN NaN NaN 0 0 Median 173980000 80849000 93129000 173980000 80849000 93129000 0 0 0 5323 478 5442 19267;19268;19269;19270;19271 29137;29138;29139;29140;29141;29142;29143;29144;29145;29146;29147;29148 29139 12 IDIYQLDTASISGTITNEKR WSPRGEQYVVIIQNKIDIYQLDTASISGTI LDTASISGTITNEKRISSVKFLSESVLAVA K I D K R I 1 1 1 2 0 1 1 1 0 4 1 1 0 0 0 2 3 0 1 0 0 0 20 1 2237.1539 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 187 206 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 3 0.046937 42.639 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2344100 2344100 0 2344100 2344100 0 0 0 0 5324 478 5443 19272 29149 29149 1 IDKPILK SANRAVVGVVAGGGRIDKPILKAGRAYHKY GVVAGGGRIDKPILKAGRAYHKYKAKRNCW R I D L K A 0 0 0 1 0 0 0 0 0 2 1 2 0 0 1 0 0 0 0 0 0 0 7 1 825.53239 P62917;E9PKZ0;E9PKU4;E9PP36 P62917 175 181 RPL8 60S ribosomal protein L8 yes no 2 0.00039256 148.98 3 2 0.7537 0.96532 9.6049 5 Linear 0.75942 0.92659 2.6089 3 0 Plateau 0.47096 0.76543 1.5543 2 0 Median 2169000000 1240300000 928660000 1729100000 948670000 780420000 439910000 291670000 148240000 5325 1417 5444 19273;19274;19275;19276;19277 29150;29151;29152;29153;29154;29155 29153 6 IDLAVLLGK VPLPAENVTITAGQRIDLAVLLGKTPSTME ITAGQRIDLAVLLGKTPSTMENDSSNLDPS R I D G K T 1 0 0 1 0 0 0 1 0 1 3 1 0 0 0 0 0 0 0 1 0 0 9 0 940.59572 B4DZJ6;B4DYY5;F8W726;Q14157;Q5VU77 B4DZJ6 196 204 UBAP2L Ubiquitin-associated protein 2-like yes no 2 0.00069979 117.4 4 0.41083 0.52148 17.083 3 Median 0.41083 0.52148 17.083 3 0 Median NaN NaN NaN 0 0 Median 15130000 11453000 3677600 15130000 11453000 3677600 0 0 0 5326 874 5445 19278;19279;19280;19281 29156;29157;29158;29159 29157 4 IDLDSMENSER ESKLLEIQTEKNKQKIDLDSMENSERIKII NKQKIDLDSMENSERIKIIRQNLQMEIKIT K I D E R I 0 1 1 2 0 0 2 0 0 1 1 0 1 0 0 2 0 0 0 0 0 0 11 0 1307.5663 B3KVZ3;A0A0S2Z5T0;Q9H3R5;H0Y9E6 B3KVZ3 165 175 CENPH Centromere protein H yes no 2 0.010289 42.338 1 0.4719 0.60984 NaN 1 Median NaN NaN NaN 0 0 Median 0.4719 0.60984 NaN 1 0 Median 2396200 1444600 951630 0 0 0 2396200 1444600 951630 5327 482 5446 19282 29160;29161 29161 170 2 IDLPAENSNSETIIITGK GGANIKKIREESNTKIDLPAENSNSETIII PAENSNSETIIITGKRANCEAARSRILSIQ K I D G K R 1 0 2 1 0 0 2 1 0 4 1 1 0 0 1 2 2 0 0 0 0 0 18 0 1913.9946 B2R5V9;A0A024R4E5;Q00341;Q6ZS03;Q96CF6;H0Y394;Q6ZN49;H7BZC3;H7C2D1 B2R5V9 615 632 HDLBP Vigilin yes no 2 7.9111E-07 108.66 3 0.58264 0.75916 3.3143 3 Median 0.58264 0.75916 3.3143 3 0 Median NaN NaN NaN 0 0 Median 11052000 6007700 5044600 11052000 6007700 5044600 0 0 0 5328 122 5447 19283;19284;19285 29162;29163;29164;29165;29166;29167 29164 6 IDLPEYQGEPDEISIQK QILGDKFPCTLVAQKIDLPEYQGEPDEISI LPEYQGEPDEISIQKCQEAVRQ________ K I D Q K C 0 0 0 2 0 2 3 1 0 3 1 1 0 0 2 1 0 0 1 0 0 0 17 0 1972.963 Q5NT82;A0A0S2Z3W7;Q9BY32 Q5NT82 18 34 ITPA Inosine triphosphate pyrophosphatase yes no 2 2.5301E-06 131.06 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2144500 2144500 0 2144500 2144500 0 0 0 0 5329 457 5448 19286 29168 29168 1 IDLTLLNR CNVMLESRFEKMYEKIDLTLLNRLLRLIVD FEKMYEKIDLTLLNRLLRLIVDHNIADYMT K I D N R L 0 1 1 1 0 0 0 0 0 1 3 0 0 0 0 0 1 0 0 0 0 0 8 0 956.56548 Q6P2Q9;I3L0J9 Q6P2Q9 988 995 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.00027467 139.31 4 1 0.67061 0.91383 33.549 4 Median 0.60187 0.81942 13.793 3 0 Median 1.1824 1.6375 NaN 1 0 Median 48749000 27382000 21367000 42703000 24234000 18470000 6045800 3148300 2897500 5330 1592 5449 19287;19288;19289;19290;19291 29169;29170;29171;29172;29173 29170 5 IDNLDVNR SRLQRIHAEIKNSLKIDNLDVNRCIEALDE EIKNSLKIDNLDVNRCIEALDELASLQVTM K I D N R C 0 1 2 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 957.48796 O75475 O75475 365 372 PSIP1 PC4 and SFRS1-interacting protein yes yes 2 0.036271 47.082 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1081400 0 1081400 0 0 0 1081400 0 1081400 5331 1201 5450 19292 29174 29174 1 IDNSNTPFLPK HAKNIIRPQLKFREKIDNSNTPFLPKIFIK FREKIDNSNTPFLPKIFIKPNAQKPLPQAL K I D P K I 0 0 2 1 0 0 0 0 0 1 1 1 0 1 2 1 1 0 0 0 0 0 11 0 1244.6401 Q01780;B4DKG8;B4DFE4;Q59G73 Q01780 191 201 EXOSC10 Exosome component 10 yes no 2 0.0010255 93.649 2 1 0.60734 0.77784 11.399 3 Median 0.59957 0.7559 4.0468 2 0 Median 0.60734 0.91509 NaN 1 0 Median 34512000 19524000 14988000 16746000 10460000 6286100 17766000 9064200 8702200 5332 1433 5451 19293;19294;19295 29175;29176;29177;29178;29179 29177 5 IDPNVLLDPADEK DLGVTIDLINPDTYRIDPNVLLDPADEKLL YRIDPNVLLDPADEKLLEEEIQAPTSSKRS R I D E K L 1 0 1 3 0 0 1 0 0 1 2 1 0 0 2 0 0 0 0 1 0 0 13 0 1437.7351 A0A024R0H6;Q8N7H5 A0A024R0H6 94 106 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 0.0025942 81.92 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15743000 15743000 0 8966300 8966300 0 6776800 6776800 0 5333 36 5452 19296;19297;19298;19299;19300 29180;29181;29182;29183;29184 29182 5 IDQLEGDHQLIQEALIFDNK HLRQYEKSIVNYKPKIDQLEGDHQLIQEAL GDHQLIQEALIFDNKHTNYTMEHIRVGWEQ K I D N K H 1 0 1 3 0 3 2 1 1 3 3 1 0 1 0 0 0 0 0 0 0 0 20 0 2338.1805 H9KV75;B7Z565;A0A024R694;P12814;H0YJ11;H7C5W8;B3KUX9;B4DFY0;B7Z2W3;Q5ZEZ4;H0YJW3;A1L0V1 H9KV75 620 639 ACTN1 Alpha-actinin-1 yes no 3 0.0003937 67.928 1 1.3857 1.7547 NaN 1 Median 1.3857 1.7547 NaN 1 0 Median NaN NaN NaN 0 0 Median 5489900 2631400 2858500 5489900 2631400 2858500 0 0 0 5334 157 5453 19301 29185 29185 1 IDRIEESDQGPYAIILAPTR AFLIPLLVWITTLPKIDRIEESDQGPYAII ESDQGPYAIILAPTRELAQQIEEETIKFGK K I D T R E 2 2 0 2 0 1 2 1 0 4 1 0 0 0 2 1 1 0 1 0 0 0 20 1 2256.175 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56 B3KY11 439 458 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 3 7.4965E-05 100.95 3 0.48236 0.65412 4.7192 2 Median 0.48236 0.65412 4.7192 2 0 Median NaN NaN NaN 0 0 Median 24355000 16335000 8020200 24355000 16335000 8020200 0 0 0 5335 45 5454 19302;19303;19304 29186;29187;29188;29189 29187 4 IDRTDAISEEK DETISNVPILILGNKIDRTDAISEEKLRVI LGNKIDRTDAISEEKLRVIFGLYGQTTGKG K I D E K L 1 1 0 2 0 0 2 0 0 2 0 1 0 0 0 1 1 0 0 0 0 0 11 1 1275.6307 Q8NG23;Q5SQT9;Q9NR31;Q6FID4;H0Y5E8 Q8NG23 136 146 SAR1A;SARA1 GTP-binding protein SAR1a yes no 2 0.0046074 72.006 1 0.81955 1.0535 NaN 1 Median 0.81955 1.0535 NaN 1 0 Median NaN NaN NaN 0 0 Median 5845400 3352500 2493000 5845400 3352500 2493000 0 0 0 5336 1564 5455 19305 29190 29190 1 IDSLSAQLSQLQK LVGAAHEELQQSRIRIDSLSAQLSQLQKQL IRIDSLSAQLSQLQKQLAAKEAKLRDLEDS R I D Q K Q 1 0 0 1 0 3 0 0 0 1 3 1 0 0 0 3 0 0 0 0 0 0 13 0 1429.7777 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;Q5TCI8 P02545 299 311 LMNA Prelamin-A/C;Lamin-A/C yes no 2 2.7143E-78 267.07 4 2 0.62063 0.78604 42.824 6 Median 0.61485 0.77649 5.1966 4 0 Median 0.91984 1.438 60.842 2 0 Median 213690000 130660000 83033000 143880000 94928000 48949000 69812000 35728000 34084000 5337 1229 5456 19306;19307;19308;19309;19310;19311 29191;29192;29193;29194;29195;29196;29197;29198;29199;29200 29192 10 IDSVYLDPLVFR CLLRGKQGGFENKKRIDSVYLDPLVFREFA KKRIDSVYLDPLVFREFAFIDMPDAAHGIS R I D F R E 0 1 0 2 0 0 0 0 0 1 2 0 0 1 1 1 0 0 1 2 0 0 12 0 1435.7711 A8K410;A0A024RA58;O60443;A4FVA8;H7BZJ0;H7C147 A8K410 250 261 DFNA5 Non-syndromic hearing impairment protein 5 yes no 2 0.0031308 54.608 1 0.38117 0.51037 NaN 1 Median 0.38117 0.51037 NaN 1 0 Median NaN NaN NaN 0 0 Median 1804700 1315900 488780 1804700 1315900 488780 0 0 0 5338 237 5457 19312 29201 29201 1 IDTIEIITDR TEEHHLRDYFEEYGKIDTIEIITDRQSGKK EEYGKIDTIEIITDRQSGKKRGFGFVTFDD K I D D R Q 0 1 0 2 0 0 1 0 0 4 0 0 0 0 0 0 2 0 0 0 0 0 10 0 1187.6398 P22626;A0A024RA28;A0A087WUI2;I6L957 P22626 138 147 HNRNPA2B1;HNRPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2 1.0828E-08 182.76 4 2 0.22087 0.30346 128.63 6 Median 0.20687 0.28295 17.77 4 0 Median 2.0236 3.2265 5.9842 2 0 Median 290900000 203410000 87493000 211270000 174530000 36743000 79627000 28877000 50750000 5339 1290 5458 19313;19314;19315;19316;19317;19318 29202;29203;29204;29205;29206;29207;29208;29209;29210;29211;29212;29213 29202 12 IDTTSFLANLK TKGLLDNPISEKSTKIDTTSFLANLKLHTE KSTKIDTTSFLANLKLHTEDSRMKKEVNFS K I D L K L 1 0 1 1 0 0 0 0 0 1 2 1 0 1 0 1 2 0 0 0 0 0 11 0 1221.6605 Q8NG31;E9PPJ1 Q8NG31 203 213 CASC5 Protein CASC5 no no 2 0.00090023 76.465 1 2 0.47035 0.70417 NaN 1 Median NaN NaN NaN 0 0 Median 0.47035 0.70417 NaN 1 0 Median 25035000 20373000 4662100 5876800 5876800 0 19158000 14496000 4662100 5340 1656 5459 19319;19320;19321 29214;29215;29216;29217 29217 4 IDVASIK EKPIVKPKEASTETKIDVASIKEKVKKAKN KEASTETKIDVASIKEKVKKAKNKKLGALT K I D I K E 1 0 0 1 0 0 0 0 0 2 0 1 0 0 0 1 0 0 0 1 0 0 7 0 744.43815 Q13601 Q13601 341 347 KRR1 KRR1 small subunit processome component homolog yes yes 2 0.030424 85.265 2 0.89337 1.1235 4.3935 2 Median 0.89337 1.1235 4.3935 2 0 Median NaN NaN NaN 0 0 Median 71864000 39834000 32030000 71864000 39834000 32030000 0 0 0 5341 1473 5460 19322;19323 29218;29219;29220 29220 3 IDVSINECYDGSYAGNPQDIHR SRFIFNYVYHPKGARIDVSINECYDGSYAG CYDGSYAGNPQDIHRQPGFAFSRNGPVKRT R I D H R Q 1 1 2 3 1 1 1 2 1 3 0 0 0 0 1 2 0 0 2 1 0 0 22 0 2522.1132 J3QQW9;Q15022;A8K1U9 J3QQW9 464 485 SUZ12 Polycomb protein SUZ12 yes no 3 3.4566E-32 161.08 4 2 0.77301 1.0549 8.5615 6 Median 0.77301 1.0376 9.3095 4 0 Median 0.74501 1.1302 8.6647 2 0 Median 133540000 73615000 59928000 97658000 53510000 44148000 35886000 20106000 15780000 5342 1143 5461 19324;19325;19326;19327;19328;19329 29221;29222;29223;29224;29225;29226;29227;29228;29229;29230;29231;29232;29233;29234 29226 14 IEAINQAIANEYEVR KPLLKKPMGPAHWEKIEAINQAIANEYEVR IEAINQAIANEYEVRRKLLIKRLDVTVQSF K I E V R R 3 1 2 0 0 1 3 0 0 3 0 0 0 0 0 0 0 0 1 1 0 0 15 0 1731.8792 E9PH82;I6L9E8;Q8NCA5;B4DT23;B4DY25 E9PH82 204 218 FAM98A Protein FAM98A yes no 2 2.6477E-36 177.16 5 1 0.71817 0.9586 6.108 4 Median 0.72268 0.96041 6.1687 3 0 Median 0.67092 0.92701 NaN 1 0 Median 55584000 31772000 23812000 45484000 25391000 20093000 10100000 6381400 3718600 5343 1028 5462 19330;19331;19332;19333;19334;19335 29235;29236;29237;29238;29239;29240;29241;29242;29243;29244 29240 10 IEALQNHENESVYK EKLSIMIEECGGLDKIEALQNHENESVYKA KIEALQNHENESVYKASLSLIEKYFSVEEE K I E Y K A 1 0 2 0 0 1 3 0 1 1 1 1 0 0 0 1 0 0 1 1 0 0 14 0 1672.8057 Q7Z726;A8K7D9;P52292 Q7Z726 473 486 KPNA2 Importin subunit alpha;Importin subunit alpha-1 yes no 2;3 2.365E-19 158.86 7 4 0.4015 0.60049 11.588 8 Median 0.5094 0.63655 16.337 4 0 Median 0.39025 0.59046 5.9941 4 0 Median 153370000 108040000 45331000 106600000 74208000 32397000 46768000 33833000 12935000 5344 633 5463 19336;19337;19338;19339;19340;19341;19342;19343;19344;19345;19346 29245;29246;29247;29248;29249;29250;29251;29252;29253;29254;29255;29256;29257;29258 29251 14 IEANAGQLYLTGVVVLHK VYRVRNLSNPAKKFKIEANAGQLYLTGVVV NAGQLYLTGVVVLHKDVNVVVVEGGPKAQK K I E H K D 2 0 1 0 0 1 1 2 1 1 3 1 0 0 0 0 1 0 1 3 0 0 18 0 1924.0782 B4DLS8;Q53GV6;B2R791;O43395;B4DM28 B4DLS8 546 563 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes no 3 0.035316 38.578 1 0.60624 0.76772 NaN 1 Median 0.60624 0.76772 NaN 1 0 Median NaN NaN NaN 0 0 Median 3922700 2807400 1115300 3922700 2807400 1115300 0 0 0 5345 703 5464 19347 29259 29259 1 IEDEECVRLDK KRAADEVLAEAKKPRIEDEECVRLDKERLA KKPRIEDEECVRLDKERLAARLEGHKEGIV R I E D K E 0 1 0 2 1 0 3 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 11 1 1404.6555 Q6P1J9;A0A1B0GUB2;B4DV47 Q6P1J9 140 150 CDC73 Parafibromin yes no 2;3 0.0057699 112.11 3 0.66943 0.85958 NaN 1 Median 0.66943 0.85958 NaN 1 0 Median NaN NaN NaN 0 0 Median 11804000 9314500 2489500 11804000 9314500 2489500 0 0 0 5346 1590 5465 19348;19349;19350 29260;29261;29262 29261 3 IEDFLER LDEGKMKLDYILGLKIEDFLERRLQTQVFK LDYILGLKIEDFLERRLQTQVFKLGLAKSI K I E E R R 0 1 0 1 0 0 2 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 7 0 920.46035 A0A024R4M0;P46781;B5MCT8;C9JM19;B7Z732;A5D904 A0A024R4M0 102 108 RPS9 40S ribosomal protein S9 yes no 2 9.8174E-09 162.31 4 2 0.6961 0.94541 13.14 5 Median 0.76329 1.0463 6.437 3 0 Median 0.50279 0.81262 0.74469 2 0 Median 494450000 317320000 177140000 382960000 243040000 139930000 111490000 74280000 37211000 5347 124 5466 19351;19352;19353;19354;19355;19356 29263;29264;29265;29266;29267;29268;29269;29270;29271;29272;29273;29274 29267 12 IEDFLERR LDEGKMKLDYILGLKIEDFLERRLQTQVFK DYILGLKIEDFLERRLQTQVFKLGLAKSIH K I E R R L 0 2 0 1 0 0 2 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 8 1 1076.5615 A0A024R4M0;P46781;B5MCT8;C9JM19;B7Z732;A5D904 A0A024R4M0 102 109 RPS9 40S ribosomal protein S9 yes no 2;3 0.0018129 115.49 5 1 0.77956 1.0545 23.136 6 Median 0.78882 1.0705 3.9249 5 0 Median 0.45857 0.60947 NaN 1 0 Median 426120000 245100000 181020000 420680000 241520000 179160000 5447100 3585400 1861700 5348 124 5467 19357;19358;19359;19360;19361;19362 29275;29276;29277;29278;29279;29280;29281;29282;29283 29277 9 IEDGISSTLPSK DYTRNASNLERNDLRIEDGISSTLPSKESR DLRIEDGISSTLPSKESRRKGGLDYLKQVE R I E S K E 0 0 0 1 0 0 1 1 0 2 1 1 0 0 1 3 1 0 0 0 0 0 12 0 1245.6452 A0A024RAC0;Q86V48;E5RFK8;Q05DE3 A0A024RAC0 242 253 LUZP1 Leucine zipper protein 1 yes no 2 0.00048019 73.666 2 1.0453 1.3462 NaN 1 Median 1.0453 1.3462 NaN 1 0 Median NaN NaN NaN 0 0 Median 6168700 1916500 4252200 6168700 1916500 4252200 0 0 0 5349 238 5468 19363;19364 29284;29285 29285 2 IEDGNNFGVSIQEETVAELR PILNIHDLTQLLIPRIEDGNNFGVSIQEET NFGVSIQEETVAELRTVESEAASYLDQISR R I E L R T 1 1 2 1 0 1 4 2 0 2 1 0 0 1 0 1 1 0 0 2 0 0 20 0 2219.0706 J7FRP4;A0A087WTV2;B3KQ25;K7ESG5;V9HWJ8;Q6FHK7;A0A024R203;P61289;K7EPX6;K7EKR3 J7FRP4 63 82 PSME3;HEL-S-283 Proteasome activator complex subunit 3 yes no 2 0.030459 60.968 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 636310 636310 0 636310 636310 0 0 0 0 5350 75 5469 19365 29286 29286 1 IEDLEEGQQVIR KDLMHGLITLMLDSRIEDLEEGQQVIRSVN DSRIEDLEEGQQVIRSVNLLVVKVLEKSDQ R I E I R S 0 1 0 1 0 2 3 1 0 2 1 0 0 0 0 0 0 0 0 1 0 0 12 0 1427.7256 Q14008;Q8IYN5 Q14008 1655 1666 CKAP5 Cytoskeleton-associated protein 5 yes no 2 0.030642 65.157 1 2 0.93687 1.3147 NaN 1 Median 0.93687 1.3147 NaN 1 0 Median NaN NaN NaN 0 0 Median 6280000 974420 5305600 2190300 974420 1215900 4089700 0 4089700 5351 1481 5470 19366;19367;19368 29287;29288;29289 29289 3 IEDLENEIEEVK KTPEQIMQEKQIEAKIEDLENEIEEVKVAF EAKIEDLENEIEEVKVAFEIKKLALDSVLM K I E V K V 0 0 1 1 0 0 5 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 12 0 1458.709 B3KVZ3;A0A0S2Z5T0;Q9H3R5 B3KVZ3 82 93 CENPH Centromere protein H yes no 2 5.3595E-05 105.17 3 0.9215 1.1534 NaN 1 Median 0.9215 1.1534 NaN 1 0 Median NaN NaN NaN 0 0 Median 11807000 8060900 3745900 11807000 8060900 3745900 0 0 0 5352 482 5471 19369;19370;19371 29290;29291;29292;29293 29292 4 IEDLSQQAQLAAAEK KSPASDTYIVFGEAKIEDLSQQAQLAAAEK IEDLSQQAQLAAAEKFKVQGEAV_______ K I E E K F 4 0 0 1 0 3 2 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 15 0 1613.8261 F8W1N5;F8VZJ2;F8VNW4;F8W0W4;H0YHX9;A0A024RB41;Q13765;E9PAV3;B4DDI8 F8W1N5 49 63 NACA;hCG_2016482 Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form yes no 2 4.1192E-49 220.37 3 2 1.9486 2.91 128.9 3 Plateau 0.26737 0.33916 11.833 2 0 Median 2.0892 3.1476 NaN 1 0 Median 59068000 30496000 28572000 32076000 25645000 6431200 26992000 4850700 22141000 5353 260 5472 19372;19373;19374;19375;19376 29294;29295;29296;29297;29298;29299 29294 6 IEDNNTLVFIVDVK AIIKFPLTTESAMKKIEDNNTLVFIVDVKA KIEDNNTLVFIVDVKANKHQIKQAVKKLYD K I E V K A 0 0 2 2 0 0 1 0 0 2 1 1 0 1 0 0 1 0 0 3 0 0 14 0 1617.8614 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7 H7BY10 92 105 RPL23A 60S ribosomal protein L23a yes no 2 7.8893E-87 259.35 5 2 0.96046 1.2221 32.192 6 Median 0.98641 1.298 6.5113 4 0 Median 0.44818 0.70124 13.469 2 0 Median 458180000 250650000 207530000 362480000 182090000 180380000 95705000 68554000 27151000 5354 658 5473 19377;19378;19379;19380;19381;19382;19383 29300;29301;29302;29303;29304;29305;29306;29307;29308;29309;29310;29311;29312;29313 29303 14 IEDRLPELEQLER ______________________________ ERIEDRLPELEQLERIGLFSHAEIKAIIKK R I E E R I 0 2 0 1 0 1 4 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 13 1 1638.8577 B3KQ21;Q9NYH9;B4DSL9;B7Z9G4 B3KQ21 9 21 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 3 2.076E-05 122.78 4 1 0.84159 1.1325 19.603 5 Median 0.92282 1.2577 20.838 4 0 Median 0.68033 1.0113 NaN 1 0 Median 177900000 105060000 72840000 154380000 92532000 61845000 23523000 12528000 10994000 5355 768 5474 19384;19385;19386;19387;19388 29314;29315;29316;29317;29318;29319 29316 6 IEDVGSDEEDDSGK GEKEEEDKDDEEKPKIEDVGSDEEDDSGKD KIEDVGSDEEDDSGKDKKKKTKKIKEKYID K I E G K D 0 0 0 4 0 0 3 2 0 1 0 1 0 0 0 2 0 0 0 1 0 0 14 0 1493.6005 A0A024RD80;P08238;B4DMA2;B4DGL0;Q6PK50;Q58FF8 A0A024RD80 250 263 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 2 0.045191 42.743 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5356 312;1551 5475 19389 29320 29320 1 IEDVTPIPSDSTR SALRALARSGMKIGRIEDVTPIPSDSTRRK GRIEDVTPIPSDSTRRKGGRRGRRL_____ R I E T R R 0 1 0 2 0 0 1 0 0 2 0 0 0 0 2 2 2 0 0 1 0 0 13 0 1428.7096 P62263 P62263 129 141 RPS14 40S ribosomal protein S14 yes yes 2 1.6105E-16 163.9 4 3 0.79804 1.0955 30.573 6 Median 0.81551 1.1239 3.1985 4 0 Median 0.37272 0.62099 3.3476 2 0 Median 1636200000 1037600000 598590000 775220000 414990000 360230000 860980000 622620000 238360000 5357 1401 5476 19390;19391;19392;19393;19394;19395;19396 29321;29322;29323;29324;29325;29326;29327;29328;29329;29330;29331;29332;29333;29334;29335;29336;29337;29338;29339;29340;29341;29342 29335 22 IEDVTPIPSDSTRR SALRALARSGMKIGRIEDVTPIPSDSTRRK RIEDVTPIPSDSTRRKGGRRGRRL______ R I E R R K 0 2 0 2 0 0 1 0 0 2 0 0 0 0 2 2 2 0 0 1 0 0 14 1 1584.8107 P62263 P62263 129 142 RPS14 40S ribosomal protein S14 yes yes 2;3 1.5555E-07 87.18 6 0.80145 1.0749 4.5674 4 Median 0.80145 1.0749 4.5674 4 0 Median NaN NaN NaN 0 0 Median 161530000 87944000 73584000 161530000 87944000 73584000 0 0 0 5358 1401 5477 19397;19398;19399;19400;19401;19402 29343;29344;29345;29346;29347;29348;29349 29345 6 IEEALMDPGR ERELEKQKAEKELSRIEEALMDPGRQPESA KELSRIEEALMDPGRQPESADDFDRLVLSS R I E G R Q 1 1 0 1 0 0 2 1 0 1 1 0 1 0 1 0 0 0 0 0 0 0 10 0 1129.5438 Q14690 Q14690 1591 1600 PDCD11 Protein RRP5 homolog yes yes 2 0.010854 45.598 1 0.73014 0.97104 NaN 1 Median NaN NaN NaN 0 0 Median 0.73014 0.97104 NaN 1 0 Median 4809900 2045800 2764100 0 0 0 4809900 2045800 2764100 5359 1494 5478 19403 29350 29350 672 1 IEEALMDPGRQPESADDFDR ERELEKQKAEKELSRIEEALMDPGRQPESA MDPGRQPESADDFDRLVLSSPNSSILWLQY R I E D R L 2 2 0 4 0 1 3 1 0 1 1 0 1 1 2 1 0 0 0 0 0 0 20 1 2290.0172 Q14690 Q14690 1591 1610 PDCD11 Protein RRP5 homolog yes yes 3 1.1831E-06 56.327 1 0.78399 1.1957 NaN 1 Median NaN NaN NaN 0 0 Median 0.78399 1.1957 NaN 1 0 Median 16941000 10944000 5996900 0 0 0 16941000 10944000 5996900 5360 1494 5479 19404 29351;29352 29352 672 2 IEEDFPHIR VAEAALQIFKNTGSKIEEDFPHIRSALLPV KNTGSKIEEDFPHIRSALLPVLHHKSKKGP K I E I R S 0 1 0 1 0 0 2 0 1 2 0 0 0 1 1 0 0 0 0 0 0 0 9 0 1154.572 Q9NTI5;B7Z5S1 Q9NTI5 699 707 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 3 0.013972 65.305 1 0.42734 0.61085 NaN 1 Median 0.42734 0.61085 NaN 1 0 Median NaN NaN NaN 0 0 Median 2493300 1467200 1026100 2493300 1467200 1026100 0 0 0 5361 1759 5480 19405 29353 29353 1 IEEGTYGVVYR LQGCRSVEEFQCLNRIEEGTYGVVYRAKDK CLNRIEEGTYGVVYRAKDKKTDEIVALKRL R I E Y R A 0 1 0 0 0 0 2 2 0 1 0 0 0 0 0 0 1 0 2 2 0 0 11 0 1284.635 Q96CA8;Q6P5Y5;Q4VBY6;B4E0M9;B4E0N4;A4VCI5;Q5QPR4;J3QR29;B4E3D9;A0A0D9SEI3;Q5QPR3;B7ZVY7;A0A0D9SER5;A0A0D9SEN2;J3QR44;Q9UQ88;P21127 Q96CA8 113 123 CDC2L2;CDC2L1;CDK11A;CDK11B Cyclin-dependent kinase 11A;Cyclin-dependent kinase 11B yes no 2 0.00013611 88.948 1 0.9774 1.3169 NaN 1 Median 0.9774 1.3169 NaN 1 0 Median NaN NaN NaN 0 0 Median 2186500 1245000 941510 2186500 1245000 941510 0 0 0 5362 431 5481 19406 29354 29354 1 IEELEALLQEAR LTSFYQEEIQERDEKIEELEALLQEARQQS DEKIEELEALLQEARQQSVAHQQSGSELAL K I E A R Q 2 1 0 0 0 1 4 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 12 0 1412.7511 O95235 O95235 648 659 KIF20A Kinesin-like protein KIF20A yes yes 2 5.8953E-16 177.57 4 4 0.63735 0.86798 18.19 6 Median 0.72545 0.97367 15.864 4 0 Median 0.48229 0.76386 3.7189 2 0 Median 105010000 68422000 36583000 29781000 16599000 13182000 75224000 51823000 23401000 5363 1215 5482 19407;19408;19409;19410;19411;19412;19413;19414 29355;29356;29357;29358;29359;29360;29361;29362;29363 29357 9 IEELLSGENR VLTFVLPTEQFHLGKIEELLSGENRGPILL FHLGKIEELLSGENRGPILLPYQFRMEEIE K I E N R G 0 1 1 0 0 0 3 1 0 1 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1158.5881 Q9NY93;Q53HB9;H7C3E9;H7BZN7 Q9NY93 400 409 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 1.0859E-05 129.42 3 0.95192 1.3078 9.9364 3 Median 0.95192 1.3078 9.9364 3 0 Median NaN NaN NaN 0 0 Median 34310000 16328000 17982000 34310000 16328000 17982000 0 0 0 5364 1768 5483 19415;19416;19417 29364;29365;29366;29367;29368;29369 29368 6 IEELLSGENRGPILLPYQFR VLTFVLPTEQFHLGKIEELLSGENRGPILL SGENRGPILLPYQFRMEEIEGFRYRCRDAM K I E F R M 0 2 1 0 0 1 3 2 0 2 4 0 0 1 2 1 0 0 1 0 0 0 20 1 2343.2587 Q9NY93;Q53HB9;H7C3E9;H7BZN7 Q9NY93 400 419 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 3 1.0898E-06 68.187 4 1.0474 1.4383 NaN 1 Median 1.0474 1.4383 NaN 1 0 Median NaN NaN NaN 0 0 Median 10859000 5833500 5025300 10859000 5833500 5025300 0 0 0 5365 1768 5484 19418;19419;19420;19421 29370;29371;29372;29373 29371 4 IEENSLKEEESIEGEK PNTPAPVPPAEDGIKIEENSLKEEESIEGE EENSLKEEESIEGEKEVKSTAPETAIECTQ K I E E K E 0 0 1 0 0 0 7 1 0 2 1 2 0 0 0 2 0 0 0 0 0 0 16 1 1861.8793 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 1540 1555 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2;3 1.5258E-141 275.19 8 3 0.83744 1.0294 35.609 8 Median 0.77113 0.94477 14.827 5 0 Median 1.1306 1.8085 7.3721 3 0 Median 234800000 119270000 115530000 126860000 68651000 58212000 107940000 50618000 57322000 5366 428 5485 19422;19423;19424;19425;19426;19427;19428;19429;19430;19431;19432 29374;29375;29376;29377;29378;29379;29380;29381;29382;29383;29384;29385;29386;29387;29388;29389;29390;29391;29392 29378 19 IEEQFANLHIVK ______________________________ MEKIEEQFANLHIVKCSLGTKEPTYLLGID K I E V K C 1 0 1 0 0 1 2 0 1 2 1 1 0 1 0 0 0 0 0 1 0 0 12 0 1439.7773 G3V4B8;A0A024R667;Q96FK6 G3V4B8 4 15 WDR89;C14orf150 WD repeat-containing protein 89 yes no 3 0.028155 39.581 1 0.95151 1.2043 NaN 1 Median 0.95151 1.2043 NaN 1 0 Median NaN NaN NaN 0 0 Median 5531800 2912400 2619400 5531800 2912400 2619400 0 0 0 5367 156 5486 19433 29393 29393 1 IEESDQGPYAIILAPTR IPLLVWITTLPKIDRIEESDQGPYAIILAP ESDQGPYAIILAPTRELAQQIEEETIKFGK R I E T R E 2 1 0 1 0 1 2 1 0 3 1 0 0 0 2 1 1 0 1 0 0 0 17 0 1871.9629 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56 B3KY11 442 458 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.0012492 103.14 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2790500 2790500 0 2790500 2790500 0 0 0 0 5368 45 5487 19434;19435 29394;29395 29395 2 IEESITEDLSLADLMPR DFEGTDEPIFGKKPRIEESITEDLSLADLM ESITEDLSLADLMPRVKVQSVETVEGCTHE R I E P R V 1 1 0 2 0 0 3 0 0 2 3 0 1 0 1 2 1 0 0 0 0 0 17 0 1930.9558 P42285;A8K6I4;H0Y8U3 P42285 82 98 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 0.00023128 50.286 1 0.52132 0.79046 NaN 1 Median NaN NaN NaN 0 0 Median 0.52132 0.79046 NaN 1 0 Median 18579000 12785000 5793800 0 0 0 18579000 12785000 5793800 5369 1336 5488 19436 29396 29396 561 1 IEEVLSGVLDTELR AASARSLPNEEIVQKIEEVLSGVLDTELRY KIEEVLSGVLDTELRYKPDLKEGSRKSRCV K I E L R Y 0 1 0 1 0 0 3 1 0 1 3 0 0 0 0 1 1 0 0 2 0 0 14 0 1571.8407 P18583;D3DSF7;Q3SWV4;A0JLP4;Q6ZRV7;J3QSZ5 P18583 65 78 SON Protein SON yes no 2 0.0003376 99.671 4 0.53131 0.7114 10.65 3 Median 0.53131 0.7114 10.65 3 0 Median NaN NaN NaN 0 0 Median 18769000 10861000 7908600 18769000 10861000 7908600 0 0 0 5370 1282 5489 19437;19438;19439;19440 29397;29398;29399;29400;29401 29400 5 IEEVPELPLVVEDK AASALPALVMSKGHRIEEVPELPLVVEDKV RIEEVPELPLVVEDKVEGYKKTKEAVLLLK R I E D K V 0 0 0 1 0 0 4 0 0 1 2 1 0 0 2 0 0 0 0 3 0 0 14 0 1607.8658 P36578;Q59GY2;B4DFI6;H3BM89;Q53G74;B4DMJ2 P36578 144 157 RPL4 60S ribosomal protein L4 yes no 2 3.6563E-14 158.06 4 2 0.71959 0.96645 8.625 6 Median 0.72276 0.94715 1.9571 4 0 Median 0.71444 1.1247 0.35659 2 0 Median 1980600000 1155600000 824970000 1133100000 661050000 472040000 847480000 494550000 352930000 5371 1325 5490 19441;19442;19443;19444;19445;19446 29402;29403;29404;29405;29406;29407;29408;29409;29410;29411;29412;29413;29414;29415 29404 14 IEEVPELPLVVEDKVEGYK AASALPALVMSKGHRIEEVPELPLVVEDKV PELPLVVEDKVEGYKKTKEAVLLLKKLKAW R I E Y K K 0 0 0 1 0 0 5 1 0 1 2 2 0 0 2 0 0 0 1 4 0 0 19 1 2184.1566 P36578;Q59GY2;B4DFI6;H3BM89;Q53G74;B4DMJ2 P36578 144 162 RPL4 60S ribosomal protein L4 yes no 3 2.2889E-09 92.096 4 2 0.73977 0.94387 15.608 6 Median 0.73937 0.90292 4.9625 4 0 Median 0.75003 1.2085 5.8962 2 0 Median 380040000 216760000 163280000 272280000 154540000 117740000 107760000 62221000 45542000 5372 1325 5491 19447;19448;19449;19450;19451;19452 29416;29417;29418;29419;29420;29421;29422;29423;29424;29425;29426;29427 29422 12 IEEVPELPLVVEDKVEGYKK AASALPALVMSKGHRIEEVPELPLVVEDKV ELPLVVEDKVEGYKKTKEAVLLLKKLKAWN R I E K K T 0 0 0 1 0 0 5 1 0 1 2 3 0 0 2 0 0 0 1 4 0 0 20 2 2312.2515 P36578;Q59GY2;B4DFI6;H3BM89;Q53G74;B4DMJ2 P36578 144 163 RPL4 60S ribosomal protein L4 yes no 3;4 1.4628E-05 90.379 7 1 0.73365 0.86252 6.9913 8 Median 0.73371 0.86245 3.7588 7 0 Median 0.58296 1.0176 NaN 1 0 Median 305310000 178500000 126810000 280550000 163380000 117170000 24763000 15121000 9641600 5373 1325 5492 19453;19454;19455;19456;19457;19458;19459;19460 29428;29429;29430;29431;29432;29433;29434;29435;29436;29437;29438;29439 29428 11 IEFEPASK GKLLASSAKKVLLQKIEFEPASKSFSYQLE KKVLLQKIEFEPASKSFSYQLEALKSKYVL K I E S K S 1 0 0 0 0 0 2 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 8 0 919.4651 A0A024R8V6;Q9P275;A0A075B784;Q9H9C5;E9PEW0;K7ERC1;K7ELT3;K7EQS0;K7EPT1;K7ELR5;Q8IXW9;K7EJI3 A0A024R8V6 40 47 USP36;DUB1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 2 0.032913 50.04 1 0.86692 1.0945 NaN 1 Median 0.86692 1.0945 NaN 1 0 Median NaN NaN NaN 0 0 Median 9622600 4674300 4948300 9622600 4674300 4948300 0 0 0 5374 205 5493 19461 29440 29440 1 IEFEQNLAANEQAGPINR EDTLAQVRKEYEMQRIEFEQNLAANEQAGP EQNLAANEQAGPINREMRHLISSLQNHNHQ R I E N R E 3 1 3 0 0 2 3 1 0 2 1 0 0 1 1 0 0 0 0 0 0 0 18 0 2012.9916 B4DMM1;A0A0S2Z4Z2;H3BP71;A8K6K1;A0A0S2Z537;A0A024QZG0;O75150 B4DMM1 156 173 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 2 2.9132E-07 126.56 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 713030 713030 0 713030 713030 0 0 0 0 5375 13 5494 19462 29441 29441 1 IEFGVDVTTK EKSWLPQNCTLVDMKIEFGVDVTTKEIVLA LVDMKIEFGVDVTTKEIVLADVIDNDSWRL K I E T K E 0 0 0 1 0 0 1 1 0 1 0 1 0 1 0 0 2 0 0 2 0 0 10 0 1107.5812 D6RF62;E9PBS1;A0A024RD93;P22234;B4DGX3 D6RF62 100 109 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 2 0.034831 72.325 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1151200 1151200 0 1151200 1151200 0 0 0 0 5376 313 5495 19463;19464 29442;29443 29443 2 IEFLQSHENQEIYQK NPYCALIEEAYGLDKIEFLQSHENQEIYQK IEFLQSHENQEIYQKAFDLIEHYFGTEDED K I E Q K A 0 0 1 0 0 3 3 0 1 2 1 1 0 1 0 1 0 0 1 0 0 0 15 0 1904.9268 Q5BKZ2;P52294 Q5BKZ2 481 495 KPNA1 Importin subunit alpha;Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed no no 3 1.1146E-06 115.91 4 0.4909 0.54232 9.0813 4 Linear 0.4909 0.54232 9.0813 4 0 Linear NaN NaN NaN 0 0 Median 65475000 43437000 22039000 65475000 43437000 22039000 0 0 0 5377 1364 5496 19465;19466;19467;19468 29444;29445;29446;29447;29448 29445 5 IEGDMIVCAAYAHELPK RVTNRDIICQIAYARIEGDMIVCAAYAHEL GDMIVCAAYAHELPKYGVKVGLTNYAAAYC R I E P K Y 3 0 0 1 1 0 2 1 1 2 1 1 1 0 1 0 0 0 1 1 0 0 17 0 1915.9172 A2RUM7;P46777;B3KTM6;Q59GX9;Q9BUV4;Q5T7N0 A2RUM7 69 85 RPL5 60S ribosomal protein L5 yes no 3 4.4191E-19 140.77 10 3 0.76213 0.97002 21.962 11 Median 0.76695 0.97106 5.2662 9 0 Median 0.38659 0.58264 16.789 2 0 Median 311970000 190810000 121170000 273710000 164220000 109480000 38267000 26584000 11683000 5378 540 5497;5498 19469;19470;19471;19472;19473;19474;19475;19476;19477;19478;19479;19480;19481 29449;29450;29451;29452;29453;29454;29455;29456;29457;29458;29459;29460;29461;29462;29463;29464;29465;29466;29467;29468 29461 186 20 IEGDPQGVQQAK SVRIPPDSEKSNLIRIEGDPQGVQQAKREL LIRIEGDPQGVQQAKRELLELASRMENERT R I E A K R 1 0 0 1 0 3 1 2 0 1 0 1 0 0 1 0 0 0 0 1 0 0 12 0 1268.6361 B2R5V9;A0A024R4E5;Q00341;Q6ZS03;Q96CF6;H0Y394 B2R5V9 483 494 HDLBP Vigilin yes no 2 0.0028013 88.056 3 0.63215 0.80609 NaN 1 Median 0.63215 0.80609 NaN 1 0 Median NaN NaN NaN 0 0 Median 1696300 1101500 594770 1696300 1101500 594770 0 0 0 5379 122 5499 19482;19483;19484 29469;29470;29471 29471 3 IEGVEHLPRR NTQPAEEEYFINQLKIEGVEHLPRRVTNEI INQLKIEGVEHLPRRVTNEITSNSRYEVYT K I E R R V 0 2 0 0 0 0 2 1 1 1 1 0 0 0 1 0 0 0 0 1 0 0 10 1 1204.6677 Q92889;A0PJA9 Q92889 78 87 ERCC4 DNA repair endonuclease XPF yes no 3 0.0037949 78.934 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5380 1677 5500 19485 29472 29472 1 IEGVYAR KRGLRNQREHTALLKIEGVYARDETEFYLG REHTALLKIEGVYARDETEFYLGKRCAYVY K I E A R D 1 1 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 1 1 0 0 7 0 806.42865 P18077;F8WBS5;F8WB72;C9K025 P18077 30 36 RPL35A 60S ribosomal protein L35a yes no 2 0.0097106 118.06 3 1 0.68537 0.93629 7.4436 4 Median 0.68779 0.94299 2.0834 3 0 Median 0.51305 0.81918 NaN 1 0 Median 611350000 363160000 248180000 554650000 326490000 228160000 56693000 36669000 20023000 5381 1280 5501 19486;19487;19488;19489 29473;29474;29475;29476;29477 29473 5 IEGVYARDETEFYLGK KRGLRNQREHTALLKIEGVYARDETEFYLG EGVYARDETEFYLGKRCAYVYKAKNNTVTP K I E G K R 1 1 0 1 0 0 3 2 0 1 1 1 0 1 0 0 1 0 2 1 0 0 16 1 1888.9207 P18077;F8WBS5;F8WB72;C9K025 P18077 30 45 RPL35A 60S ribosomal protein L35a yes no 2;3 3.5957E-06 90.861 8 0.71519 0.94867 24.164 7 Median 0.71519 0.94867 24.164 7 0 Median NaN NaN NaN 0 0 Median 462540000 262190000 200340000 462540000 262190000 200340000 0 0 0 5382 1280 5502 19490;19491;19492;19493;19494;19495;19496;19497 29478;29479;29480;29481;29482;29483;29484;29485;29486;29487;29488;29489 29487 12 IEGVYARDETEFYLGKR KRGLRNQREHTALLKIEGVYARDETEFYLG GVYARDETEFYLGKRCAYVYKAKNNTVTPG K I E K R C 1 2 0 1 0 0 3 2 0 1 1 1 0 1 0 0 1 0 2 1 0 0 17 2 2045.0218 P18077;F8WBS5;F8WB72;C9K025 P18077 30 46 RPL35A 60S ribosomal protein L35a yes no 3;4 0.0023333 60.209 2 0.67644 0.82888 13.138 2 Median 0.67644 0.82888 13.138 2 0 Median NaN NaN NaN 0 0 Median 12392000 6468000 5924100 12392000 6468000 5924100 0 0 0 5383 1280 5503 19498;19499 29490;29491;29492;29493 29491 3 IEGYEDQVLITEHGDLGNSR HAFAQYNMDQFTPVKIEGYEDQVLITEHGD DQVLITEHGDLGNSRFLDPRNKISFKFDHL K I E S R F 0 1 1 2 0 1 3 3 1 2 2 0 0 0 0 1 1 0 1 1 0 0 20 0 2244.0659 A8K0T9;A0A024R0E5;P52907 A8K0T9 67 86 CAPZA1 F-actin-capping protein subunit alpha-1 yes no 3 4.7255E-25 124.63 4 2 0.9557 1.2805 40.769 6 Median 0.89774 1.1975 7.345 4 0 Median 1.8064 2.6272 2.6564 2 0 Median 99475000 51981000 47494000 84713000 46009000 38704000 14762000 5972100 8790100 5384 32 5504 19500;19501;19502;19503;19504;19505 29494;29495;29496;29497;29498;29499;29500;29501;29502;29503;29504;29505;29506 29500 13 IEHLIGK AITFVTQYDVELFQRIEHLIGKKLPGFPTQ YDVELFQRIEHLIGKKLPGFPTQDDEVMML R I E G K K 0 0 0 0 0 0 1 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 7 0 808.48069 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;Q7Z4B1 Q53GJ1 371 377 hCG_27698;DDX47;E4-DBP;MST162 Probable ATP-dependent RNA helicase DDX47 yes no 2 0.01895 100.74 2 2 0.64779 0.89465 31.881 4 Median 0.95427 1.1896 11.929 2 0 Median 0.46141 0.69696 6.9437 2 0 Median 70464000 40040000 30424000 44052000 21951000 22101000 26412000 18089000 8323200 5385 249 5505 19506;19507;19508;19509 29507;29508;29509;29510;29511 29511 5 IEHSFWR DMQNRLNKVIKSVGKIEHSFWRSFHTERKT KVIKSVGKIEHSFWRSFHTERKTEPATGFI K I E W R S 0 1 0 0 0 0 1 0 1 1 0 0 0 1 0 1 0 1 0 0 0 0 7 0 973.477 Q16531;B4DSA8;B4DZP5 Q16531 1068 1074 DDB1 DNA damage-binding protein 1 yes no 2 0.025122 69.176 2 0.72814 1.0786 NaN 1 Median NaN NaN NaN 0 0 Median 0.72814 1.0786 NaN 1 0 Median 10760000 7607500 3152300 0 0 0 10760000 7607500 3152300 5386 1520 5506 19510;19511 29512;29513 29512 2 IEIESFYEGEDFSETLTR VEKAKRALSSQHQARIEIESFYEGEDFSET ESFYEGEDFSETLTRAKFEELNMDLFRSTM R I E T R A 0 1 0 1 0 0 5 1 0 2 1 0 0 2 0 2 2 0 1 0 0 0 18 0 2163.9848 V9HWB4;P11021 V9HWB4 307 324 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 2 1.9048E-08 113.35 4 0.6485 0.90312 13.755 2 Median 0.6485 0.90312 13.755 2 0 Median NaN NaN NaN 0 0 Median 9861900 6716300 3145700 9861900 6716300 3145700 0 0 0 5387 1252 5507 19512;19513;19514;19515 29514;29515;29516;29517 29516 4 IEIHEQEAILHNFSSTNPTQVNGSVIDEPVR DIRIQLPVVSKQHCKIEIHEQEAILHNFSS NPTQVNGSVIDEPVRLKHGDVITIIDRSFR K I E V R L 1 1 3 1 0 2 4 1 2 4 1 0 0 1 2 3 2 0 0 3 0 0 31 0 3472.7223 P46013 P46013 51 81 MKI67 Antigen KI-67 yes yes 3;4 3.0223E-08 79.512 5 1 0.84376 1.1624 16.852 6 Median 0.85083 1.1658 18.545 5 0 Median 0.72484 1.0879 NaN 1 0 Median 420230000 218990000 201230000 404510000 211360000 193150000 15716000 7632400 8084100 5388 1342 5508 19516;19517;19518;19519;19520;19521 29518;29519;29520;29521;29522;29523;29524;29525;29526;29527;29528;29529;29530;29531 29520 13 IEIHYAK YGESNLVAEPQKVNKIEIHYAKTAKKMDMK AEPQKVNKIEIHYAKTAKKMDMKKLKQSMW K I E A K T 1 0 0 0 0 0 1 0 1 2 0 1 0 0 0 0 0 0 1 0 0 0 7 0 872.4756 Q15003;B4DRG7;E9PHA2;A8K4T8;H7C415 Q15003 631 637 NCAPH Condensin complex subunit 2 yes no 2 0.012536 114.02 4 2 0.62987 0.84764 10.973 6 Median 0.70461 0.90538 12.949 4 0 Median 0.52277 0.83511 5.0042 2 0 Median 357790000 215390000 142410000 271700000 158960000 112740000 86093000 56423000 29669000 5389 1500 5509 19522;19523;19524;19525;19526;19527 29532;29533;29534;29535;29536;29537;29538;29539;29540 29532 9 IEINQTGTTLYYQPGLLYGGSVEHDCSVLR ASFIRLLDKITNGSRIEINQTGTTLYYQPG LLYGGSVEHDCSVLRGIGYYLESLLCLAPF R I E L R G 0 1 1 1 1 2 2 4 1 2 4 0 0 0 1 2 3 0 3 2 0 0 30 0 3382.6504 Q9Y2P8;Q5VYW8 Q9Y2P8 64 93 RCL1 RNA 3-terminal phosphate cyclase-like protein yes no 3 3.0373E-17 110.89 4 0.90337 1.2162 8.1633 4 Median 0.90337 1.2162 8.1633 4 0 Median NaN NaN NaN 0 0 Median 62557000 32148000 30409000 62557000 32148000 30409000 0 0 0 5390 1806 5510 19528;19529;19530;19531 29541;29542;29543;29544;29545;29546;29547;29548 29546 8 IEISELNR QITAGRHGDSVRNSKIEISELNRVIQRLRS DSVRNSKIEISELNRVIQRLRSEIDNVKKQ K I E N R V 0 1 1 0 0 0 2 0 0 2 1 0 0 0 0 1 0 0 0 0 0 0 8 0 972.52401 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2;CON__P35908;P35908 H6VRG3 396 403 KRT1;KRT2 Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 2 epidermal no no 1;2 0.00046257 129.68 4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 992550000 992550000 0 503830000 503830000 0 488720000 488720000 0 + 5391 1113;1114;964 5511 19532;19533;19534;19535;19536;19537 29549;29550;29551;29552;29553;29554;29555;29556 29550 8 IEISSPCCPR RPISSCSQRRGPKCRIEISSPCCPRQVPPQ GPKCRIEISSPCCPRQVPPQRCPVEIPPIR R I E P R Q 0 1 0 0 2 0 1 0 0 2 0 0 0 0 2 2 0 0 0 0 0 0 10 0 1217.5533 Q5T749 Q5T749 327 336 KPRP Keratinocyte proline-rich protein yes yes 2 0.031914 47.823 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1612300 1612300 0 0 0 0 1612300 1612300 0 5392 1571 5512 19538 29557 29557 1 IELEEMGPSLDLVLR SYKLLLKKSGCRTPRIELEEMGPSLDLVLR IELEEMGPSLDLVLRRTHLASDDLYKLSMK R I E L R R 0 1 0 1 0 0 3 1 0 1 4 0 1 0 1 1 0 0 0 1 0 0 15 0 1712.9019 A8K800;Q9H7B2;Q5VXN0;B4DWS5 A8K800 212 226 RPF2 Ribosome production factor 2 homolog yes no 2 4.0064E-15 128.28 6 1 0.7292 1.0404 9.544 6 Median 0.74206 1.001 10.524 5 0 Median 0.67816 1.0813 NaN 1 0 Median 82638000 50428000 32209000 28572000 16726000 11846000 54066000 33702000 20363000 5393 637 5513;5514 19539;19540;19541;19542;19543;19544;19545 29558;29559;29560;29561;29562;29563;29564;29565;29566 29560 218 9 IELEEMGPSLDLVLRR SYKLLLKKSGCRTPRIELEEMGPSLDLVLR ELEEMGPSLDLVLRRTHLASDDLYKLSMKM R I E R R T 0 2 0 1 0 0 3 1 0 1 4 0 1 0 1 1 0 0 0 1 0 0 16 1 1869.003 A8K800;Q9H7B2;Q5VXN0;B4DWS5 A8K800 212 227 RPF2 Ribosome production factor 2 homolog yes no 3 0.043346 13.791 1 0.34326 0.45094 NaN 1 Median 0.34326 0.45094 NaN 1 0 Median NaN NaN NaN 0 0 Median 2348200 1209600 1138500 2348200 1209600 1138500 0 0 0 5394 637 5515 19546 29567 29567 1 IELEPPDK SSVFKGISVNAEQVRIELEPPDKAKPLGTV VNAEQVRIELEPPDKAKPLGTVQQKRRQKM R I E D K A 0 0 0 1 0 0 2 0 0 1 1 1 0 0 2 0 0 0 0 0 0 0 8 0 939.49131 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8 B2RWN5 1163 1170 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.0070403 81.548 1 1 0.89632 1.1063 NaN 1 Median 0.89632 1.1063 NaN 1 0 Median NaN NaN NaN 0 0 Median 40639000 20670000 19970000 36733000 20670000 16064000 3906200 0 3906200 5395 748 5516 19547;19548 29568;29569;29570 29568 3 IELPELFDR ARGLFKDFFPETGTKIELPELFDRGTASFP PETGTKIELPELFDRGTASFPQTIYCGFDP K I E D R G 0 1 0 1 0 0 2 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 9 0 1130.5972 H0YHS6;Q9Y2Z4 H0YHS6 33 41 YARS2 Tyrosine--tRNA ligase;Tyrosine--tRNA ligase, mitochondrial yes no 2 0.012021 60.436 2 1 0.61092 0.83735 29.207 3 Median 0.59274 0.82548 2.0204 2 0 Median 1.0353 1.3682 NaN 1 0 Median 13761000 7572100 6189300 9275800 5722600 3553200 4485600 1849400 2636100 5396 1101 5517 19549;19550;19551 29571;29572;29573;29574 29571 4 IELTLNKPDFTSLIGSQAALIK MKATKDGQCESQDPRIELTLNKPDFTSLIG PDFTSLIGSQAALIKSGLGFVKSTSWHHSD R I E I K S 2 0 1 1 0 1 1 1 0 3 4 2 0 1 1 2 2 0 0 0 0 0 22 1 2371.3363 Q9Y2F5 Q9Y2F5 759 780 ICE1 Little elongation complex subunit 1 yes yes 3 1.917E-14 125.92 2 0.62932 0.76318 30.888 2 Median 0.62932 0.76318 30.888 2 0 Median NaN NaN NaN 0 0 Median 7961000 4119700 3841200 7961000 4119700 3841200 0 0 0 5397 1805 5518 19552;19553 29575;29576 29575 2 IENVETLVLQAPK LPSELERQEDQGCVRIENVETLVLQAPKDS VRIENVETLVLQAPKDSFALKSNERGIGQA R I E P K D 1 0 1 0 0 1 2 0 0 1 2 1 0 0 1 0 1 0 0 2 0 0 13 0 1452.8188 O95235;D6RBN1;D6R9E4 O95235 90 102 KIF20A Kinesin-like protein KIF20A;Kinesin-like protein yes no 2 1.0951E-20 190.57 4 2 0.81337 1.0241 14.723 6 Median 0.86334 1.0751 4.7705 4 0 Median 0.51132 0.80858 4.4852 2 0 Median 399110000 248780000 150320000 147920000 80199000 67723000 251180000 168580000 82602000 5398 1215 5519 19554;19555;19556;19557;19558;19559 29577;29578;29579;29580;29581;29582;29583;29584;29585;29586;29587;29588 29581 12 IEPAEELNSNDMK PVVIMKRSLRTSAKRIEPAEELNSNDMKTN KRIEPAEELNSNDMKTNKEEHKLQDSVPEN R I E M K T 1 0 2 1 0 0 3 0 0 1 1 1 1 0 1 1 0 0 0 0 0 0 13 0 1488.6766 P46013 P46013 3059 3071 MKI67 Antigen KI-67 yes yes 2 0.0024885 45.829 2 0.83327 1.2597 4.5096 2 Median NaN NaN NaN 0 0 Median 0.83327 1.2597 4.5096 2 0 Median 31878000 16980000 14897000 0 0 0 31878000 16980000 14897000 5399 1342 5520 19560;19561 29589;29590 29589 575 2 IEPDTTALSTNHETIDLLVQILR QAIAVAEPSTSECLRIEPDTTALSTNHETI STNHETIDLLVQILRNCLRYFLPPSFPISK R I E L R N 1 1 1 2 0 1 2 0 1 3 4 0 0 0 1 1 4 0 0 1 0 0 23 0 2591.3806 Q9Y6X9;H7C1V1 Q9Y6X9 894 916 MORC2 MORC family CW-type zinc finger protein 2 yes no 3 6.0198E-05 61.767 2 0.64144 0.89209 23.936 2 Median 0.64144 0.89209 23.936 2 0 Median NaN NaN NaN 0 0 Median 6635900 4103200 2532700 6635900 4103200 2532700 0 0 0 5400 1834 5521 19562;19563 29591;29592;29593;29594 29594 4 IEPGVSVSLVNPQPSNGHFSTK IREDCCPGKPLNVFRIEPGVSVSLVNPQPS SLVNPQPSNGHFSTKIEIKQGDNCDSIIRR R I E T K I 0 0 2 0 0 1 1 2 1 1 1 1 0 1 3 4 1 0 0 3 0 0 22 0 2293.1703 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3;Q9NPU8;Q9HAM7;B3KXA9 B4E266 1017 1038 LARS;DKFZp762P233 Leucine--tRNA ligase, cytoplasmic yes no 3 0.042026 47.392 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1992400 1992400 0 1992400 1992400 0 0 0 0 5401 732 5522 19564 29595 29595 1 IEPPGLFR FCIMDNHKERIANFKIEPPGLFRGRGNHPK ERIANFKIEPPGLFRGRGNHPKMGMLKRRI K I E F R G 0 1 0 0 0 0 1 1 0 1 1 0 0 1 2 0 0 0 0 0 0 0 8 0 927.5178 P11387;B9EG90;B7Z9E8;B4DYD2;E5KMK7;E5KMK6;E5KMK5;Q969P6;E5RIC7;D3DWJ7;E5RJ95;E5RFS0 P11387 355 362 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 2 0.0024933 110.61 3 2 0.75445 1.0349 15.962 5 Median 0.74321 1.0111 1.7064 3 0 Median 0.82169 1.358 0.050587 2 0 Median 1271800000 709410000 562400000 814390000 462550000 351830000 457420000 246860000 210560000 5402 1255 5523 19565;19566;19567;19568;19569 29596;29597;29598;29599;29600;29601;29602;29603 29600 8 IEQIQCYSAK DLEQLHIKVTSLCSRIEQIQCYSAKDRLAQ SLCSRIEQIQCYSAKDRLAQSDMAKRVANL R I E A K D 1 0 0 0 1 2 1 0 0 2 0 1 0 0 0 1 0 0 1 0 0 0 10 0 1238.5965 P52948;H7C3P6;H0YCT1 P52948 1730 1739 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 6.1592E-07 94.692 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5403 1367 5524 19570 29604 29604 1 IEQVDKEDEITEK PSGDSTLPTCSKKRKIEQVDKEDEITEKKA RKIEQVDKEDEITEKKAKKAKIKVKVEEEE K I E E K K 0 0 0 2 0 1 4 0 0 2 0 2 0 0 0 0 1 0 0 1 0 0 13 1 1574.7675 Q9Y2X3;B3KN82 Q9Y2X3 445 457 NOP58 Nucleolar protein 58 yes no 2;3 2.045E-55 211.38 8 2 0.72852 0.88957 14.536 9 Median 0.73163 0.89467 15.537 8 0 Median 0.53174 0.85345 NaN 1 0 Median 362390000 206130000 156260000 341780000 196810000 144970000 20608000 9322100 11286000 5404 1810 5525 19571;19572;19573;19574;19575;19576;19577;19578;19579;19580 29605;29606;29607;29608;29609;29610;29611;29612;29613;29614;29615;29616;29617;29618;29619;29620;29621 29613 17 IEQVDKEDEITEKK PSGDSTLPTCSKKRKIEQVDKEDEITEKKA KIEQVDKEDEITEKKAKKAKIKVKVEEEEE K I E K K A 0 0 0 2 0 1 4 0 0 2 0 3 0 0 0 0 1 0 0 1 0 0 14 2 1702.8625 Q9Y2X3;B3KN82 Q9Y2X3 445 458 NOP58 Nucleolar protein 58 yes no 2;3 6.1739E-10 130.69 5 1 0.70806 0.91095 13.7 4 Median 0.78532 0.88063 13.829 3 0 Median 0.56108 0.9846 NaN 1 0 Median 73614000 43398000 30216000 65607000 38196000 27411000 8006600 5202200 2804300 5405 1810 5526 19581;19582;19583;19584;19585;19586 29622;29623;29624;29625;29626;29627;29628;29629 29626 8 IESEGLLSLTTQLVK ERFKALHSKLQALGKIESEGLLSLTTQLVK IESEGLLSLTTQLVKEKLSTCEAEDIATYE K I E V K E 0 0 0 0 0 1 2 1 0 1 4 1 0 0 0 2 2 0 0 1 0 0 15 0 1629.9189 Q6PKB3;G5EA06;B4DT94;A0A024RAJ1;Q92552;Q8N6F2;B4DKI9 Q6PKB3 155 169 MRPS27 28S ribosomal protein S27, mitochondrial yes no 2 1.2969E-09 184.03 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1327700 1327700 0 1327700 1327700 0 0 0 0 5406 244 5527 19587 29630 29630 1 IESLSSQLSNLQK TVNSAREELMESRMRIESLSSQLSNLQKES MRIESLSSQLSNLQKESRACLERIQELEDL R I E Q K E 0 0 1 0 0 2 1 0 0 1 3 1 0 0 0 4 0 0 0 0 0 0 13 0 1445.7726 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;B4DZT3 P20700 300 312 LMNB1 Lamin-B1 yes no 2 1.3007E-58 225.93 5 2 1.215 1.6599 81.386 4 Median 0.65288 0.81894 0.82723 2 0 Median 2.221 3.3531 0.35128 2 0 Median 130480000 85942000 44535000 99574000 76337000 23238000 30903000 9605600 21297000 5407 1285 5528 19588;19589;19590;19591;19592;19593;19594 29631;29632;29633;29634;29635;29636;29637;29638;29639;29640;29641 29631 11 IETDEEESCDNAHGDANQPAR EEEEEGKPSRKRLHRIETDEEESCDNAHGD ESCDNAHGDANQPARDSQPRVLPSEQESTK R I E A R D 3 1 2 3 1 1 4 1 1 1 0 0 0 0 1 1 1 0 0 0 0 0 21 0 2356.9462 Q96T23 Q96T23 1303 1323 RSF1 Remodeling and spacing factor 1 yes yes 3 3.8317E-19 126.8 4 2 0.65885 0.89071 8.2109 6 Median 0.65805 0.91471 10.574 4 0 Median 0.66905 0.88391 0.69327 2 0 Median 23627000 14016000 9611000 13232000 7840300 5391400 10395000 6175200 4219600 5408 1702 5529 19595;19596;19597;19598;19599;19600 29642;29643;29644;29645;29646;29647;29648;29649;29650;29651;29652 29644 11 IETDLPQIR VAEAAIQIFRNTGHKIETDLPQIRSTLIPI RNTGHKIETDLPQIRSTLIPILHQKAKRGT K I E I R S 0 1 0 1 0 1 1 0 0 2 1 0 0 0 1 0 1 0 0 0 0 0 9 0 1083.5924 G1UI16;Q29RF7 G1UI16 709 717 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 0.026559 75.213 1 0.24116 0.34001 NaN 1 Median 0.24116 0.34001 NaN 1 0 Median NaN NaN NaN 0 0 Median 2709500 1663400 1046100 2709500 1663400 1046100 0 0 0 5409 1076 5530 19601 29653 29653 1 IETIEVMEDR TEEYNLRDYFEKYGKIETIEVMEDRQSGKK EKYGKIETIEVMEDRQSGKKRGFAFVTFDD K I E D R Q 0 1 0 1 0 0 3 0 0 2 0 0 1 0 0 0 1 0 0 1 0 0 10 0 1233.5911 B4E3E6;B4DDB6;P51991;Q65ZQ3 B4E3E6 130 139 HNRPA3;HNRNPA3;D10S102 Heterogeneous nuclear ribonucleoprotein A3 yes no 2 0.050514 46.819 1 2.0824 3.0597 NaN 1 Median NaN NaN NaN 0 0 Median 2.0824 3.0597 NaN 1 0 Median 6447400 1879200 4568200 0 0 0 6447400 1879200 4568200 5410 793 5531 19602 29654 29654 0 IETKPCGEELK EFLRHLKSFFQIMFKIETKPCGEELKGGDK IMFKIETKPCGEELKGGDKVLMTCVGIGFS K I E L K G 0 0 0 0 1 0 3 1 0 1 1 2 0 0 1 0 1 0 0 0 0 0 11 1 1302.649 Q9Y2P8;Q5VZU3 Q9Y2P8 341 351 RCL1 RNA 3-terminal phosphate cyclase-like protein yes no 3 0.040777 51.727 1 1.2759 1.5788 NaN 1 Median 1.2759 1.5788 NaN 1 0 Median NaN NaN NaN 0 0 Median 6891800 3831000 3060800 6891800 3831000 3060800 0 0 0 5411 1806 5532 19603 29655 29655 1 IETLDPALIRPGR FDSRGDVKVIMATNRIETLDPALIRPGRID NRIETLDPALIRPGRIDRKIEFPLPDEKTK R I E G R I 1 2 0 1 0 0 1 1 0 2 2 0 0 0 2 0 1 0 0 0 0 0 13 1 1449.8304 Q53XL8;Q53HB3;P62191 Q53XL8 334 346 PSMC1 26S protease regulatory subunit 4 yes no 3 0.00062042 92.943 3 1 0.41367 0.55956 136.16 4 Median 0.40932 0.54059 18.173 3 0 Median 5.5459 7.5634 NaN 1 0 Median 36845000 22767000 14078000 30775000 21756000 9019200 6070000 1011000 5059100 5412 1398 5533 19604;19605;19606;19607 29656;29657;29658;29659;29660 29657 4 IETNENNLESAK MLRTAVDSLVAYSVKIETNENNLESAKGLL SVKIETNENNLESAKGLLDDLRNDLDRLFV K I E A K G 1 0 3 0 0 0 3 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 12 0 1360.647 B3KVX6;Q8TB01;Q6NWZ1;A0A024RBH2;Q07065 B3KVX6 486 497 CKAP4 Cytoskeleton-associated protein 4 yes no 2 0.0020605 57.149 1 3.9356 5.1987 NaN 1 Median NaN NaN NaN 0 0 Median 3.9356 5.1987 NaN 1 0 Median 1916300 428440 1487800 0 0 0 1916300 428440 1487800 5413 272 5534 19608 29661 29661 1 IETVISDEEVIK AVRGLEALLADPQQKIETVISDEEVIKWTK QQKIETVISDEEVIKWTKFFVVFRHPVLIF K I E I K W 0 0 0 1 0 0 3 0 0 3 0 1 0 0 0 1 1 0 0 2 0 0 12 0 1373.729 Q9H8H0;J3QR28;J3QLQ6 Q9H8H0 143 154 NOL11 Nucleolar protein 11 yes no 2 1.0513E-09 138.22 4 3 0.88468 1.1163 11.453 5 Median 0.91058 1.1546 5.5961 4 0 Median 0.61261 0.9192 NaN 1 0 Median 153880000 72040000 81843000 125660000 59853000 65802000 28227000 12186000 16041000 5414 1743 5535 19609;19610;19611;19612;19613;19614;19615 29662;29663;29664;29665;29666;29667;29668;29669;29670;29671;29672;29673 29666 12 IEVEIPK LPQDQQEEEPIPETRIEVEIPKVNTDLGND EEPIPETRIEVEIPKVNTDLGNDLYFVKLP R I E P K V 0 0 0 0 0 0 2 0 0 2 0 1 0 0 1 0 0 0 0 1 0 0 7 0 826.48002 B4DNM0;Q8WVC0 B4DNM0 336 342 LEO1 RNA polymerase-associated protein LEO1 yes no 2 0.004339 134.66 3 0.65842 0.83918 5.2567 3 Median 0.65842 0.83918 5.2567 3 0 Median NaN NaN NaN 0 0 Median 38738000 23795000 14942000 38738000 23795000 14942000 0 0 0 5415 838 5536 19616;19617;19618 29674;29675;29676 29675 3 IEVIEIMTDR TEEHHLRDYFEQYGKIEVIEIMTDRGSGKK EQYGKIEVIEIMTDRGSGKKRGFAFVTFDD K I E D R G 0 1 0 1 0 0 2 0 0 3 0 0 1 0 0 0 1 0 0 1 0 0 10 0 1217.6326 F8W6I7;A0A024RB53;A0A024RAZ7;P09651;Q0VAC0;Q6IPF2;A0A024RC46;F8VTQ5;F8VZ49;Q9BSM5;A0A024QZ98;Q32P51;H0YH80;F8VYN5 F8W6I7 131 140 HNRNPA1;HNRPA1;hCG_2020860;RP11-78J21.1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2 0.00086888 76.228 2 1.6316 2.4371 1.6733 2 Median NaN NaN NaN 0 0 Median 1.6316 2.4371 1.6733 2 0 Median 32263000 12598000 19665000 0 0 0 32263000 12598000 19665000 5416 253 5537 19619;19620 29677;29678;29679;29680 29678 103 4 IEVNVELRK FKNKGKDSTEMRRRRIEVNVELRKAKKDDQ EMRRRRIEVNVELRKAKKDDQMLKRRNVSS R I E R K A 0 1 1 0 0 0 2 0 0 1 1 1 0 0 0 0 0 0 0 2 0 0 9 1 1098.6397 Q7Z726;A8K7D9;P52292;J3QLL0;J3KS65 Q7Z726 32 40 KPNA2 Importin subunit alpha;Importin subunit alpha-1 yes no 3 0.036003 49.418 2 0.81399 1.092 NaN 1 Median 0.81399 1.092 NaN 1 0 Median NaN NaN NaN 0 0 Median 5982800 4523700 1459100 5982800 4523700 1459100 0 0 0 5417 633 5538 19621;19622 29681;29682 29681 2 IEVPLYSLLEQTHLK NRSQFEELCAELLQKIEVPLYSLLEQTHLK IEVPLYSLLEQTHLKVEDVSAVEIVGGATR K I E L K V 0 0 0 0 0 1 2 0 1 1 4 1 0 0 1 1 1 0 1 1 0 0 15 0 1781.9927 A0A024RDQ0;A0A024RDS1;Q92598;B4DF68;B4DZB4;A0A0A0MSM0;B4DY72 A0A024RDQ0 317 331 HSPH1 Heat shock protein 105 kDa yes no 3 0.0028588 68.944 4 0.28077 0.35023 5.2935 3 Median 0.28077 0.35023 5.2935 3 0 Median NaN NaN NaN 0 0 Median 41597000 33516000 8080500 41597000 33516000 8080500 0 0 0 5418 320 5539 19623;19624;19625;19626 29683;29684;29685;29686;29687;29688 29688 6 IEVQDTSGGTTALRPSASTQALSSSVSSSK CYQEVSQCFGVLSSRIEVQDTSGGTTALRP SASTQALSSSVSSSKLFSSSTAPHETSFGE R I E S K L 3 1 0 1 0 2 1 2 0 1 2 1 0 0 1 9 4 0 0 2 0 0 30 1 2951.4684 Q16531;F5GY55;B7Z2A1;B4DZP5 Q16531 740 769 DDB1 DNA damage-binding protein 1 yes no 3 4.0724E-47 156.2 4 2 0.7548 1.0908 16.22 6 Median 0.77394 1.0172 10.674 4 0 Median 0.74368 1.3083 7.3879 2 0 Median 791210000 446020000 345180000 335990000 184230000 151760000 455220000 261800000 193420000 5419 1520 5540 19627;19628;19629;19630;19631;19632 29689;29690;29691;29692;29693;29694;29695;29696;29697;29698;29699;29700;29701;29702;29703;29704;29705;29706;29707;29708;29709;29710 29694 22 IEVSLQPEVPPSK FQNSEQSRRILRRRKIEVSLQPEVPPSKQL RKIEVSLQPEVPPSKQLLSTIMKDSEKHIE K I E S K Q 0 0 0 0 0 1 2 0 0 1 1 1 0 0 3 2 0 0 0 2 0 0 13 0 1421.7766 Q9H8H0;J3QR28 Q9H8H0 387 399 NOL11 Nucleolar protein 11 yes no 2 0.0035212 94.538 1 1 0.80348 1.12 12.709 2 Median 0.9531 1.2253 NaN 1 0 Median 0.67735 1.0237 NaN 1 0 Median 12206000 5160300 7045700 3423300 1895800 1527600 8782700 3264600 5518100 5420 1743 5541 19633;19634 29711;29712 29712 2 IEYDCELVPR LGHNSDGKFIARAQRIEYDCELVPRRVAIF ARAQRIEYDCELVPRRVAIFIEKTKDGQIL R I E P R R 0 1 0 1 1 0 2 0 0 1 1 0 0 0 1 0 0 0 1 1 0 0 10 0 1292.6071 A5PLK7;A0A024RAC5;Q9P258 A5PLK7 236 245 RCC2 Protein RCC2 yes no 2 0.01928 45.997 1 0.6028 0.80989 NaN 1 Median 0.6028 0.80989 NaN 1 0 Median NaN NaN NaN 0 0 Median 3242900 1483300 1759600 3242900 1483300 1759600 0 0 0 5421 239 5542 19635 29713 29713 1 IEYNDQNDGSCDVK VGSLGFAIEGPSQAKIEYNDQNDGSCDVKY KIEYNDQNDGSCDVKYWPKEPGEYAVHIMC K I E V K Y 0 0 2 3 1 1 1 1 0 1 0 1 0 0 0 1 0 0 1 1 0 0 14 0 1655.6733 O75369;A0A024R321;Q68CT4;E7EN95 O75369 594 607 FLNB;DKFZp686A1668 Filamin-B yes no 2 1.2722E-20 172.61 2 0.73954 0.93961 32.425 2 Median 0.73954 0.93961 32.425 2 0 Median NaN NaN NaN 0 0 Median 9498600 5378700 4119800 9498600 5378700 4119800 0 0 0 5422 1199 5543 19636;19637 29714;29715;29716;29717 29714 4 IEYVTVTPEGFR PGKFLLGYQPRGKPRIEYVTVTPEGFRYRG KPRIEYVTVTPEGFRYRGQIFPTVNGLFRW R I E F R Y 0 1 0 0 0 0 2 1 0 1 0 0 0 1 1 0 2 0 1 2 0 0 12 0 1409.7191 Q7KZ85 Q7KZ85 1484 1495 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.0013669 63.283 2 0.68612 0.96055 4.2472 2 Median 0.68612 0.96055 4.2472 2 0 Median NaN NaN NaN 0 0 Median 9859900 6074100 3785800 9859900 6074100 3785800 0 0 0 5423 1609 5544 19638;19639 29718;29719;29720 29719 3 IFAKPEEQRK KKFSAVRISKGLSEKIFAKPEEQRKTLEED GLSEKIFAKPEEQRKTLEEDVDDRAPSKKG K I F R K T 1 1 0 0 0 1 2 0 0 1 0 2 0 1 1 0 0 0 0 0 0 0 10 2 1244.6877 Q5T0F3;Q13823 Q5T0F3 632 641 GNL2 Nucleolar GTP-binding protein 2 yes no 2;3 0.0012232 109.66 5 1 0.78334 0.96177 15.643 6 Median 0.79214 0.96341 9.0421 5 0 Median 0.41298 0.71508 NaN 1 0 Median 98300000 57432000 40869000 90996000 52115000 38881000 7304600 5316500 1988000 5424 1477 5545 19640;19641;19642;19643;19644;19645 29721;29722;29723;29724;29725;29726;29727;29728;29729;29730 29725 10 IFAPNHVVAK LPTPKCHTPPLYRMRIFAPNHVVAKSRFWY LYRMRIFAPNHVVAKSRFWYFVSQLKKMKK R I F A K S 2 0 1 0 0 0 0 0 1 1 0 1 0 1 1 0 0 0 0 2 0 0 10 0 1094.6237 Q02543;M0R3D6;M0R1A7;B2R4C0;B4DM94;M0R117;B4DM74;B4DUV3;Q53HD3;Q32XH3 Q02543 32 41 RPL18A 60S ribosomal protein L18a yes no 2;3 1.0971E-07 141.52 8 3 0.71615 0.96987 11.957 9 Median 0.74344 0.9955 4.492 6 0 Linear 0.71615 1.1518 5.4966 3 0 Median 1506700000 867130000 639540000 1354900000 780720000 574140000 151820000 86417000 65404000 5425 1436 5546 19646;19647;19648;19649;19650;19651;19652;19653;19654;19655;19656 29731;29732;29733;29734;29735;29736;29737;29738;29739;29740;29741;29742;29743;29744;29745;29746 29734 16 IFAQDGEGQR EFTVDPKDAGKAPLKIFAQDGEGQRIDIQM KAPLKIFAQDGEGQRIDIQMKNRMDGTYAC K I F Q R I 1 1 0 1 0 2 1 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0 10 0 1119.5309 O75369;A0A024R321;Q68CT4;E7EN95 O75369 682 691 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.0026609 69.423 2 0.66312 0.88405 4.026 2 Median 0.66312 0.88405 4.026 2 0 Median NaN NaN NaN 0 0 Median 9329000 6148100 3180900 9329000 6148100 3180900 0 0 0 5426 1199 5547 19657;19658 29747;29748;29749 29748 3 IFAQPVSLK LRSVLDQLQDKDPARIFAQPVSLKEVPDYL DKDPARIFAQPVSLKEVPDYLDHIKHPMDF R I F L K E 1 0 0 0 0 1 0 0 0 1 1 1 0 1 1 1 0 0 0 1 0 0 9 0 1001.591 Q86X06;A0A024R4V5;B4E3L9;A0A024R4W4;O95696;B7Z926;Q9Y4Q3;J3KQ61;Q59G93;B4DZC2 Q86X06 586 594 BRD1;DKFZp434B094 Bromodomain-containing protein 1 yes no 2 0.011416 89.698 2 0.99758 1.2568 7.3127 2 Median 0.99758 1.2568 7.3127 2 0 Median NaN NaN NaN 0 0 Median 23208000 11677000 11531000 23208000 11677000 11531000 0 0 0 5427 128 5548 19659;19660 29750;29751 29750 2 IFASNLK EPEAWTAAAMYQATRIFASNLKERMAQRFY AAMYQATRIFASNLKERMAQRFYNLVLLPR R I F L K E 1 0 1 0 0 0 0 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 7 0 791.45414 Q13895;H7BY94 Q13895 236 242 BYSL Bystin yes no 2 0.0055552 123.99 3 0.98075 1.2049 5.4506 3 Plateau 0.98075 1.2049 5.4506 3 0 Plateau NaN NaN NaN 0 0 Median 47263000 24126000 23138000 47263000 24126000 23138000 0 0 0 5428 1480 5549 19661;19662;19663 29752;29753;29754;29755;29756 29752 5 IFCCHGGLSPDLQSMEQIR DCFNCLPIAAIVDEKIFCCHGGLSPDLQSM HGGLSPDLQSMEQIRRIMRPTDVPDQGLLC K I F I R R 0 1 0 1 2 2 1 2 1 2 2 0 1 1 1 2 0 0 0 0 0 0 19 0 2247.0235 A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;F8W1A0;P62136;A0A140VJS9;B3KXM2;V9HW04;P62140;B4DJ75;B7ZB67;E7ETD8 V9HW04 169 187 PPP1CC;PPP1CA;HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 3 3.9729E-05 54.355 2 1 0.83287 1.151 17.204 2 Median 0.97387 1.2999 NaN 1 0 Median 0.71229 1.0191 NaN 1 0 Median 19484000 10949000 8534400 8899600 4817400 4082200 10584000 6131800 4452200 5429 1396;1397;279 5550;5551 19664;19665;19666 29757;29758;29759 29759 110 3 IFDEILVNAADNK GINYREVTFVPGLYKIFDEILVNAADNKQR YKIFDEILVNAADNKQRDPKMSCIRVTIDP K I F N K Q 2 0 2 2 0 0 1 0 0 2 1 1 0 1 0 0 0 0 0 1 0 0 13 0 1460.7511 P11388;J3KTB7;Q71UH4;Q02880;B4DKD0;E9PCY5 P11388 84 96 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2 5.7355E-33 214.67 11 5 0.86101 1.1819 25.314 10 Median 0.86298 1.1357 26.737 7 0 Median 0.8007 1.281 19.199 3 0 Median 2257800000 1240000000 1017800000 1254600000 689950000 564680000 1003200000 550100000 453090000 5430 1256;1437 5552 19667;19668;19669;19670;19671;19672;19673;19674;19675;19676;19677;19678;19679;19680;19681;19682 29760;29761;29762;29763;29764;29765;29766;29767;29768;29769;29770;29771;29772;29773;29774;29775;29776;29777;29778;29779;29780;29781;29782;29783;29784;29785;29786;29787;29788;29789;29790;29791;29792;29793;29794;29795;29796;29797;29798;29799;29800;29801;29802;29803;29804;29805;29806;29807 29760 48 IFDLGR PKSRFCRGVPDAKIRIFDLGRKKAKVDEFP RGVPDAKIRIFDLGRKKAKVDEFPLCGHMV R I F G R K 0 1 0 1 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 6 0 719.39662 P27635;X1WI28;X5D2T3;B8A6G2;X5D2W5;A6QRI9;Q96L21 P27635 33 38 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like yes no 2 1.2325E-09 130.84 3 1 0.76734 1.0548 13.142 4 Median 0.78984 1.0751 3.4987 3 0 Median 0.51384 0.83009 NaN 1 0 Median 531280000 297120000 234170000 429350000 231410000 197950000 101930000 65709000 36219000 5431 1301 5553 19683;19684;19685;19686 29808;29809;29810;29811 29810 3 IFEPPPPK IIPLYSTLPPQQQQRIFEPPPPKKQNGAIG PPQQQQRIFEPPPPKKQNGAIGRKVVVSTN R I F P K K 0 0 0 0 0 0 1 0 0 1 0 1 0 1 4 0 0 0 0 0 0 0 8 0 923.51165 O43143;B4E0S6 O43143 400 407 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 0.019742 73.975 2 1 0.66091 0.91004 41.891 2 Median 0.52653 0.67673 NaN 1 0 Median 0.8296 1.2238 NaN 1 0 Median 24845000 12229000 12616000 15762000 7409200 8353200 9082200 4819500 4262700 5432 1180 5554 19687;19688;19689 29812;29813;29814 29813 3 IFESVTLPSNR LLRAPRFTPSEAHSRIFESVTLPSNRTSAG AHSRIFESVTLPSNRTSAGTSSSGVSNRKR R I F N R T 0 1 1 0 0 0 1 0 0 1 1 0 0 1 1 2 1 0 0 1 0 0 11 0 1261.6667 Q03164;E9PR05 Q03164 711 721 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 0.00090023 93.111 2 1 0.86806 1.1617 10.916 2 Median 0.86806 1.1617 10.916 2 0 Median NaN NaN NaN 0 0 Median 20375000 7898100 12477000 14089000 7898100 6190800 6286300 0 6286300 5433 1438 5555 19690;19691;19692 29815;29816;29817 29816 3 IFEYETQR HGPVVGSTRRLYEKKIFEYETQRRRLSPPS RRLYEKKIFEYETQRRRLSPPSSSAASSYS K I F Q R R 0 1 0 0 0 1 2 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 8 0 1084.5189 P50402 P50402 38 45 EMD Emerin yes yes 2 0.0047082 110.31 2 1 0.38047 0.51589 NaN 1 Median 0.38047 0.51589 NaN 1 0 Median NaN NaN NaN 0 0 Median 17036000 5125000 11911000 14235000 5125000 9109800 2801100 0 2801100 5434 1357 5556 19693;19694;19695 29818;29819;29820 29818 3 IFFAGDTIPK RCVYKPMQPGPHVVKIFFAGDTIPKSPFVV PHVVKIFFAGDTIPKSPFVVQVGEACNPNA K I F P K S 1 0 0 1 0 0 0 1 0 2 0 1 0 2 1 0 1 0 0 0 0 0 10 0 1107.5964 O75369;A0A024R321;Q68CT4;E7EN95 O75369 430 439 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.0071705 56.729 1 1.0331 1.2863 NaN 1 Median 1.0331 1.2863 NaN 1 0 Median NaN NaN NaN 0 0 Median 7888100 4105000 3783200 7888100 4105000 3783200 0 0 0 5435 1199 5557 19696 29821;29822;29823 29821 3 IFFIDPNERPVTLYHLLK EITETGWGEFEIIIKIFFIDPNERPVTLYH IDPNERPVTLYHLLKLFQSDTNAMLGKKTV K I F L K L 0 1 1 1 0 0 1 0 1 2 3 1 0 2 2 0 1 0 1 1 0 0 18 1 2214.2201 O95619;F8VTR4;F8W1B9 O95619 102 119 YEATS4 YEATS domain-containing protein 4 yes no 4 0.031647 16.494 1 0.5204 0.67353 NaN 1 Median 0.5204 0.67353 NaN 1 0 Median NaN NaN NaN 0 0 Median 9373300 6333100 3040300 9373300 6333100 3040300 0 0 0 5436 1222 5558 19697 29824;29825 29824 2 IFHAPNASAPSSSLSTFK CTFNADKKTLETHIKIFHAPNASAPSSSLS APNASAPSSSLSTFKDKNKNDGLKPKQADS K I F F K D 3 0 1 0 0 0 0 0 1 1 1 1 0 2 2 5 1 0 0 0 0 0 18 0 1860.937 Q6DHZ8;B2RBM8;Q9H2P0;E9PQK8 Q6DHZ8 127 144 ADNP Activity-dependent neuroprotector homeobox protein yes no 3 0.0082266 21.309 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4717800 4717800 0 4717800 4717800 0 0 0 0 5437 729 5559 19698 29826 29826 1 IFIGTFK QHIDYRMRCILQDGRIFIGTFKAFDKHMNL RCILQDGRIFIGTFKAFDKHMNLILCDCDE R I F F K A 0 0 0 0 0 0 0 1 0 2 0 1 0 2 0 0 1 0 0 0 0 0 7 0 824.47963 J3QLE5;Q6LBS1;Q66K91;Q5XPV6;B4DVS0;X5DP00;Q53HE7;Q9UIS4;Q15182;P63162;P14678;J3KRY3;S4R3P3 J3QLE5 26 32 SNRPN;SNRPB Small nuclear ribonucleoprotein-associated protein;Small nuclear ribonucleoprotein-associated protein N;Small nuclear ribonucleoprotein-associated proteins B and B yes no 2 0.0019823 132.72 5 0.7596 0.97145 4.2082 3 Median 0.7596 0.97145 4.2082 3 0 Median NaN NaN NaN 0 0 Median 56215000 24919000 31297000 56215000 24919000 31297000 0 0 0 5438 863 5560 19699;19700;19701;19702;19703 29827;29828;29829;29830;29831 29831 5 IFLFDTQHFISK KCCLLLQFILNCLYKIFLFDTQHFISKERA LYKIFLFDTQHFISKERAGALMMPLVDQLE K I F S K E 0 0 0 1 0 1 0 0 1 2 1 1 0 3 0 1 1 0 0 0 0 0 12 0 1494.7871 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8;Q8N7L7;Q96ES5 B2RWN5 2002 2013 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 0.00040416 124.39 3 0.83214 1.0475 6.4556 3 Median 0.83214 1.0475 6.4556 3 0 Median NaN NaN NaN 0 0 Median 42014000 22689000 19325000 42014000 22689000 19325000 0 0 0 5439 748 5561 19704;19705;19706 29832;29833;29834 29833 3 IFLLGLADNEAAIVQAESEETK EWRGRTVPVKIDKVRIFLLGLADNEAAIVQ DNEAAIVQAESEETKERLFESMLSECRDAI R I F T K E 4 0 1 1 0 1 4 1 0 2 3 1 0 1 0 1 1 0 0 1 0 0 22 0 2360.2111 Q9UHB9;Q96K98;Q96K97;B3KMI9 Q9UHB9 312 333 SRP68 Signal recognition particle subunit SRP68 yes no 2 5.5685E-26 148.33 4 0.66857 0.84848 11.636 4 Median 0.66857 0.84848 11.636 4 0 Median NaN NaN NaN 0 0 Median 13328000 8307900 5019700 13328000 8307900 5019700 0 0 0 5440 1784 5562 19707;19708;19709;19710 29835;29836;29837;29838;29839;29840 29836 6 IFLLTNNNLLLADQK VVNKINRANGKSTSRIFLLTNNNLLLADQK IFLLTNNNLLLADQKSGQIKSEVPLVDVTK R I F Q K S 1 0 3 1 0 1 0 0 0 1 5 1 0 1 0 0 1 0 0 0 0 0 15 0 1728.9774 E9PDF6;B0I1S9;O43795;H7C2Y7;B3KQI2 E9PDF6 978 992 MYO1B Unconventional myosin-Ib yes no 2 1.1675E-21 176.8 4 1.4112 1.807 22.808 4 Linear 1.4112 1.807 22.808 4 0 Linear NaN NaN NaN 0 0 Median 28200000 12580000 15620000 28200000 12580000 15620000 0 0 0 5441 665 5563 19711;19712;19713;19714 29841;29842;29843;29844;29845;29846 29842 6 IFNLSGGEK GIMFSVRPPKKSWKKIFNLSGGEKTLSSLA KKSWKKIFNLSGGEKTLSSLALVFALHHYK K I F E K T 0 0 1 0 0 0 1 2 0 1 1 1 0 1 0 1 0 0 0 0 0 0 9 0 963.50255 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1188 1196 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.0012536 107.29 4 2 0.69154 0.96876 5.2365 6 Median 0.71379 0.93539 4.0757 4 0 Median 0.6334 1.0118 2.2257 2 0 Median 504320000 295820000 208500000 417060000 241470000 175590000 87254000 54350000 32904000 5442 1760 5564 19715;19716;19717;19718;19719;19720 29847;29848;29849;29850;29851;29852;29853;29854;29855;29856;29857 29852 11 IFPAALQLVASGTVQLGENGK TVATLSERVKLAEHKIFPAALQLVASGTVQ QLVASGTVQLGENGKICWVKEE________ K I F G K I 3 0 1 0 0 2 1 3 0 1 3 1 0 1 1 1 1 0 0 2 0 0 21 0 2112.1579 Q3B7A7;Q59HH3;P22102;B4DJ93 Q3B7A7 983 1003 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 1.5408E-10 125.73 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 425750 425750 0 425750 425750 0 0 0 0 5443 1289 5565 19721 29858 29858 1 IFQFQNFTNTR SPWDPKENLPQDYARIFQFQNFTNTRKSIF DYARIFQFQNFTNTRKSIFKEVEEKEVEGA R I F T R K 0 1 2 0 0 2 0 0 0 1 0 0 0 3 0 0 2 0 0 0 0 0 11 0 1414.6993 Q2NL82 Q2NL82 527 537 TSR1 Pre-rRNA-processing protein TSR1 homolog yes yes 2 0.00018952 130.98 4 0.77801 1.0693 34.921 3 Median 0.77801 1.0693 34.921 3 0 Median NaN NaN NaN 0 0 Median 24758000 14067000 10692000 24758000 14067000 10692000 0 0 0 5444 1529 5566 19722;19723;19724;19725 29859;29860;29861;29862;29863 29862 5 IFQGNVHNFEK VWDVRPFAPKERCVKIFQGNVHNFEKNLLR RCVKIFQGNVHNFEKNLLRCSWSPDGSKIA K I F E K N 0 0 2 0 0 1 1 1 1 1 0 1 0 2 0 0 0 0 0 1 0 0 11 0 1331.6622 B2R9I9;A0MNP2;Q96DI7;Q9NSS8 B2R9I9 276 286 WDR57;SNRNP40;DKFZp434D199 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 3 0.0091363 59.265 2 0.60125 0.75327 4.9577 2 Median 0.60125 0.75327 4.9577 2 0 Median NaN NaN NaN 0 0 Median 26368000 16545000 9822900 26368000 16545000 9822900 0 0 0 5445 530 5567 19726;19727 29864;29865 29864 2 IFQIHTSR RKIEFPLPDEKTKKRIFQIHTSRMTLADDV DEKTKKRIFQIHTSRMTLADDVTLDDLIMA R I F S R M 0 1 0 0 0 1 0 0 1 2 0 0 0 1 0 1 1 0 0 0 0 0 8 0 1000.5454 Q53XL8;Q53HB3;P62191 Q53XL8 364 371 PSMC1 26S protease regulatory subunit 4 yes no 3 0.022243 31.074 1 0.31053 0.40866 NaN 1 Median 0.31053 0.40866 NaN 1 0 Median NaN NaN NaN 0 0 Median 6830200 5299600 1530600 6830200 5299600 1530600 0 0 0 5446 1398 5568 19728 29866 29866 1 IFQNAPTDPTQDFSTQVAK SIPDFQRKYVDKLEKIFQNAPTDPTQDFST APTDPTQDFSTQVAKLGHGLLSGEYSKPVP K I F A K L 2 0 1 2 0 3 0 0 0 1 0 1 0 2 2 1 3 0 0 1 0 0 19 0 2107.0222 A0A140VJZ1;P45974 A0A140VJZ1 361 379 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 0.0041498 32.734 1 0.42054 0.53246 NaN 1 Median 0.42054 0.53246 NaN 1 0 Median NaN NaN NaN 0 0 Median 4335700 2296400 2039400 4335700 2296400 2039400 0 0 0 5447 505 5569 19729 29867 29867 1 IFQPVIEAPGASK RIEKAANPSGKKKLKIFQPVIEAPGASKCI LKIFQPVIEAPGASKCIGPGCCHVAQPDSV K I F S K C 2 0 0 0 0 1 1 1 0 2 0 1 0 1 2 1 0 0 0 1 0 0 13 0 1355.7449 Q9BTC0 Q9BTC0 384 396 DIDO1 Death-inducer obliterator 1 yes yes 2 0.00013734 76.228 2 2 0.6285 0.86422 8.0736 4 Median 0.71777 0.91744 7.7812 2 0 Median 0.55006 0.82782 5.4163 2 0 Median 46483000 27540000 18943000 22864000 13118000 9745400 23620000 14422000 9198000 5448 1713 5570 19730;19731;19732;19733 29868;29869;29870;29871;29872;29873 29870 6 IFSGSSHQDLSQK ______________________________ IKIFSGSSHQDLSQKIADRLGLELGKVVTK K I F Q K I 0 0 0 1 0 2 0 1 1 1 1 1 0 1 0 4 0 0 0 0 0 0 13 0 1432.6947 Q53FW2;P60891;A0A0B4J207;P21108;B1ALA7;Q15244 Q53FW2 6 18 PRPS1;PRPS1L1 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3 yes no 2 0.00010093 119.03 2 1.0582 1.3871 6.5825 2 Median 1.0582 1.3871 6.5825 2 0 Median NaN NaN NaN 0 0 Median 4011400 1903200 2108200 4011400 1903200 2108200 0 0 0 5449 1390 5571 19734;19735 29874;29875 29875 2 IFSGVFVK SLLVQRTIARLRLKKIFSGVFVKVTPQNLK ARLRLKKIFSGVFVKVTPQNLKMLRIVEPY K I F V K V 0 0 0 0 0 0 0 1 0 1 0 1 0 2 0 1 0 0 0 2 0 0 8 0 895.51674 A0A024RD36;Q6DKI1;R4GMU7;B7Z4G0 A0A024RD36 124 131 RPL7L1 60S ribosomal protein L7-like 1 yes no 2 0.021191 90.777 2 0.90695 1.1324 2.0493 2 Median 0.90695 1.1324 2.0493 2 0 Median NaN NaN NaN 0 0 Median 62550000 33425000 29125000 62550000 33425000 29125000 0 0 0 5450 311 5572 19736;19737 29876;29877 29876 2 IFSQRPFDK ELLITDLLPDNRKLRIFSQRPFDKLEQLSS DNRKLRIFSQRPFDKLEQLSSGNKDSRDRR R I F D K L 0 1 0 1 0 1 0 0 0 1 0 1 0 2 1 1 0 0 0 0 0 0 9 1 1136.5978 B2R5U7;Q03701 B2R5U7 306 314 CEBPZ CCAAT/enhancer-binding protein zeta no no 3 0.0055474 83.998 3 0.70642 0.91712 12.632 3 Median 0.70642 0.91712 12.632 3 0 Median NaN NaN NaN 0 0 Median 35482000 19745000 15737000 35482000 19745000 15737000 0 0 0 5451 693;1441 5573 19738;19739;19740 29878;29879;29880 29878 3 IFTGSDDCLVK LSSVYCVTFDRTGRRIFTGSDDCLVKIWAT TGRRIFTGSDDCLVKIWATDDGRLLATLRG R I F V K I 0 0 0 2 1 0 0 1 0 1 1 1 0 1 0 1 1 0 0 1 0 0 11 0 1253.5962 Q9NSI6;Q8WWQ0 Q8WWQ0 198 208 BRWD1;PHIP Bromodomain and WD repeat-containing protein 1;PH-interacting protein no no 2 0.001356 110.76 3 2 0.86267 1.0957 6.1566 4 Median 0.87158 1.1033 0.97325 3 0 Median 0.64056 0.97356 NaN 1 0 Median 102790000 58658000 44131000 85345000 45462000 39883000 17444000 13196000 4248000 5452 1668;1758 5574 19741;19742;19743;19744;19745 29881;29882;29883;29884;29885;29886 29881 6 IFTHHLCR SSSKQEQDLLHKTARIFTHHLCRARRYCHD LLHKTARIFTHHLCRARRYCHDLGERAGAL R I F C R A 0 1 0 0 1 0 0 0 2 1 1 0 0 1 0 0 1 0 0 0 0 0 8 0 1082.5444 Q9BQG0;I3L1L3 Q9BQG0 878 885 MYBBP1A Myb-binding protein 1A yes no 3 0.010067 47.082 2 0.60318 0.80413 5.6795 2 Median 0.60318 0.80413 5.6795 2 0 Median NaN NaN NaN 0 0 Median 31507000 19558000 11949000 31507000 19558000 11949000 0 0 0 5453 1708 5575 19746;19747 29887;29888 29887 2 IFTPIVEHLGLQIR VPANRYTPLKENWMKIFTPIVEHLGLQIRF KIFTPIVEHLGLQIRFNLKSRNVEIRTCKE K I F I R F 0 1 0 0 0 1 1 1 1 3 2 0 0 1 1 0 1 0 0 1 0 0 14 0 1634.9508 B2R823;Q9NRX1;F8WBJ6 B2R823 95 108 PNO1 RNA-binding protein PNO1 yes no 3 0.00022685 87.18 2 1 1.0827 1.4627 23.067 2 Median 1.0827 1.4627 23.067 2 0 Median NaN NaN NaN 0 0 Median 30512000 16905000 13607000 23149000 9541500 13607000 7363500 7363500 0 5454 713 5576 19748;19749;19750 29889;29890;29891 29891 3 IFTSIGEDYDER TLRILFRPVASQLPRIFTSIGEDYDERVLP LPRIFTSIGEDYDERVLPSITTEILKSVVA R I F E R V 0 1 0 2 0 0 2 1 0 2 0 0 0 1 0 1 1 0 1 0 0 0 12 0 1443.6518 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0;C9JW96;C9JZ20;E7ESE2;E9PCW0;D6RBK0 Q6PUJ7 106 117 HEL-S-54e;PHB Prohibitin yes no 2 6.4686E-16 172.88 5 2 0.56912 0.78662 69.237 6 Median 0.55485 0.76478 3.7307 4 0 Median 1.8022 2.9103 2.9332 2 0 Median 448890000 261360000 187530000 340730000 221110000 119630000 108160000 40250000 67906000 5455 600 5577 19751;19752;19753;19754;19755;19756;19757 29892;29893;29894;29895;29896;29897;29898;29899;29900;29901;29902;29903;29904;29905;29906;29907;29908;29909;29910;29911;29912;29913 29898 22 IFTSLEPEHDLNDVCLYPNSGMLLTANETPK ADSRIVKMWNKNSGKIFTSLEPEHDLNDVC YPNSGMLLTANETPKMGIYYIPVLGPAPRW K I F P K M 1 0 3 2 1 0 3 1 1 1 5 1 1 1 3 2 3 0 1 1 0 0 31 0 3517.6745 Q9BSC4;B4DS83;H7C1Z3 Q9BSC4 305 335 NOL10 Nucleolar protein 10 yes no 3 0.0044908 37.348 1 0.65515 0.82679 NaN 1 Median 0.65515 0.82679 NaN 1 0 Median NaN NaN NaN 0 0 Median 1122000 713050 408980 1122000 713050 408980 0 0 0 5456 1710 5578 19758 29914 29914 1 IFTTPLTPSQYYSGSK QSADVSLNPCNTPQKIFTTPLTPSQYYSGS FTTPLTPSQYYSGSKYEDLKEKYNKEVEER K I F S K Y 0 0 0 0 0 1 0 1 0 1 1 1 0 1 2 3 3 0 2 0 0 0 16 0 1788.8934 P49454 P49454 148 163 CENPF Centromere protein F yes yes 2 0.00090781 71.085 2 0.89199 1.1638 23.084 2 Median 0.89199 1.1638 23.084 2 0 Median NaN NaN NaN 0 0 Median 8020400 4319900 3700500 8020400 4319900 3700500 0 0 0 5457 1351 5579 19759;19760 29915;29916;29917 29917 3 IFVEFTSVFDCQK IPRPVDGVEVPGCGKIFVEFTSVFDCQKAM GKIFVEFTSVFDCQKAMQGLTGRKFANRVV K I F Q K A 0 0 0 1 1 1 1 0 0 1 0 1 0 3 0 1 1 0 0 2 0 0 13 0 1618.7701 K7ENG2;B5BU25;P26368 K7ENG2 264 276 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 2 0.0033017 57.348 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3680700 3680700 0 3680700 3680700 0 0 0 0 5458 893 5580 19761 29918 29918 1 IFVGGIKEDTEEYNLR REDSVKPGAHLTVKKIFVGGIKEDTEEYNL FVGGIKEDTEEYNLRDYFEKYGKIETIEVM K I F L R D 0 1 1 1 0 0 3 2 0 2 1 1 0 1 0 0 1 0 1 1 0 0 16 1 1881.9472 B4E3E6;B4DDB6;P51991 B4E3E6 106 121 HNRPA3;HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes no 3 1.4763E-09 68.944 1 0.39795 0.51052 NaN 1 Median 0.39795 0.51052 NaN 1 0 Median NaN NaN NaN 0 0 Median 9939400 7270700 2668600 9939400 7270700 2668600 0 0 0 5459 793 5581 19762 29919 29919 1 IFVGNVSAACTSQELR LVVEMSRPRPLNTWKIFVGNVSAACTSQEL FVGNVSAACTSQELRSLFERRGRVIECDVV K I F L R S 2 1 1 0 1 1 1 1 0 1 1 0 0 1 0 2 1 0 0 2 0 0 16 0 1750.8672 A0A0S2Z4Z0;Q96PK6;A0A0S2Z567;A0A0A6YYI9;A0A0S2Z5V2;F8WDX3;A0A0A0MSL8;B8ZZ74 A0A0S2Z4Z0 81 96 RBM14;RBM14-RBM4 RNA-binding protein 14 yes no 2 3.0018E-68 222.25 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38092000 38092000 0 38092000 38092000 0 0 0 0 5460 472 5582 19763;19764;19765;19766 29920;29921;29922;29923;29924 29920 5 IFVGTK ITPEEAKYKLCKVRKIFVGTKGIPHLVTHD KYKLCKVRKIFVGTKGIPHLVTHDARTIRY K I F T K G 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 1 0 0 1 0 0 6 0 663.39556 B2R491;P62701;Q96IR1;Q53HV1 B2R491 129 134 RPS4X 40S ribosomal protein S4;40S ribosomal protein S4, X isoform yes no 2 0.019663 131.65 4 2 0.78788 1.0288 22.296 6 Median 0.81267 1.0576 2.7796 4 0 Median 0.43131 0.68424 5.5949 2 0 Median 608730000 349910000 258810000 528850000 294160000 234690000 79876000 55758000 24118000 5461 681 5583 19767;19768;19769;19770;19771;19772 29925;29926;29927;29928;29929;29930;29931;29932 29926 8 IFVNSNTDVAPFLR EVKDLASVSLKNPVRIFVNSNTDVAPFLRQ RIFVNSNTDVAPFLRQEFIRIRPNREGDRE R I F L R Q 1 1 2 1 0 0 0 0 0 1 1 0 0 2 1 1 1 0 0 2 0 0 14 0 1591.8358 B7Z6D5;B3GQE6;Q96GQ7;Q53G15 B7Z6D5 392 405 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 2.9612E-27 187.16 4 2 0.79351 1.0813 3.3178 5 Median 0.80369 1.0886 3.7988 4 0 Median 0.65554 1.0813 NaN 1 0 Median 243580000 156280000 87299000 133410000 74578000 58830000 110170000 81701000 28469000 5462 750 5584 19773;19774;19775;19776;19777;19778 29933;29934;29935;29936;29937;29938;29939;29940;29941;29942 29934 10 IFYQFLYNNNTR RKEKDTPNENRQKLRIFYQFLYNNNTRQQT KLRIFYQFLYNNNTRQQTEARDDLHCPWCT R I F T R Q 0 1 3 0 0 1 0 0 0 1 1 0 0 2 0 0 1 0 2 0 0 0 12 0 1591.7783 J3QQW9;Q15022;A8K1U9 J3QQW9 405 416 SUZ12 Polycomb protein SUZ12 yes no 2 0.00047015 102.52 3 2 0.82112 1.0788 1.405 3 Plateau 0.82112 1.0788 1.405 3 0 Plateau NaN NaN NaN 0 0 Median 24896000 8689300 16207000 14935000 8689300 6246100 9960800 0 9960800 5463 1143 5585 19779;19780;19781;19782;19783 29943;29944;29945;29946;29947;29948;29949;29950 29946 8 IFYVDTLK NQKLLAVSLLDCTVKIFYVDTLKFFLSLYG LLDCTVKIFYVDTLKFFLSLYGHKLPVICM K I F L K F 0 0 0 1 0 0 0 0 0 1 1 1 0 1 0 0 1 0 1 1 0 0 8 0 997.54843 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 575 582 WDR3 WD repeat-containing protein 3 yes no 2 0.015955 81.191 2 0.98575 1.2391 16.968 2 Median 0.98575 1.2391 16.968 2 0 Median NaN NaN NaN 0 0 Median 63095000 31034000 32061000 63095000 31034000 32061000 0 0 0 5464 1576 5586 19784;19785 29951;29952 29952 2 IGDFGLVTSLK LKPSNIFLVDTKQVKIGDFGLVTSLKNDGK KQVKIGDFGLVTSLKNDGKRTRSKGTLRYM K I G L K N 0 0 0 1 0 0 0 2 0 1 2 1 0 1 0 1 1 0 0 1 0 0 11 0 1148.6441 B7ZKK7;P19525;Q8IW76 B7ZKK7 430 440 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 2 0.0030353 121.83 3 2 0.50045 0.63286 NaN 1 Median 0.50045 0.63286 NaN 1 0 Median NaN NaN NaN 0 0 Median 22300000 12323000 9976600 13538000 12323000 1215000 8761500 0 8761500 5465 923 5587 19786;19787;19788;19789;19790 29953;29954;29955;29956;29957;29958;29959 29953 7 IGDFIDVSEGPLIPR EKASQNPERIVKLHRIGDFIDVSEGPLIPR IGDFIDVSEGPLIPRTSICFQYEVSAVHNL R I G P R T 0 1 0 2 0 0 1 2 0 3 1 0 0 1 2 1 0 0 0 1 0 0 15 0 1626.8617 C9JG87;Q9NYK5 C9JG87 247 261 MRPL39 39S ribosomal protein L39, mitochondrial yes no 2 0.00016825 67.153 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1491100 0 1491100 1491100 0 1491100 0 0 0 5466 937 5588 19791 29960 29960 1 IGDLQAFQGHGAGNLAGLK ELPAQKWWHTGALYRIGDLQAFQGHGAGNL QAFQGHGAGNLAGLKGRLDYLSSLKVKGLV R I G L K G 3 0 1 1 0 2 0 5 1 1 3 1 0 1 0 0 0 0 0 0 0 0 19 0 1865.9748 B4E2Z3;F5GZS6;J3KPF3;P08195;A0A024R599;H0YFS2 B4E2Z3 108 126 SLC3A2 4F2 cell-surface antigen heavy chain yes no 3 0.00018924 50.831 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13894000 0 13894000 0 0 0 13894000 0 13894000 5467 889 5589 19792;19793 29961;29962 29962 2 IGDLTGYCTNPNR TKIADAIENKTTVYKIGDLTGYCTNPNRHQ YKIGDLTGYCTNPNRHQMGWAKRNVDHRPK K I G N R H 0 1 2 1 1 0 0 2 0 1 1 0 0 0 1 0 2 0 1 0 0 0 13 0 1479.6776 Q05DU1;A0A024R9Y6;Q9NVN8 Q05DU1 483 495 GNL3L Guanine nucleotide-binding protein-like 3-like protein yes no 2 0.00067865 98.754 4 0.46232 0.64108 15.305 2 Median 0.46232 0.64108 15.305 2 0 Median NaN NaN NaN 0 0 Median 10209000 6953000 3256500 10209000 6953000 3256500 0 0 0 5468 233 5590 19794;19795;19796;19797 29963;29964;29965;29966 29965 4 IGDTSVSYK SEQDQPMGGWEMIRKIGDTSVSYKYTSRYV WEMIRKIGDTSVSYKYTSRYVLKAGQTVTI K I G Y K Y 0 0 0 1 0 0 0 1 0 1 0 1 0 0 0 2 1 0 1 1 0 0 9 0 968.48148 P20700;B4DZT3 P20700 475 483 LMNB1 Lamin-B1 yes no 2 0.045726 40.502 1 0.73142 0.90877 NaN 1 Median 0.73142 0.90877 NaN 1 0 Median NaN NaN NaN 0 0 Median 50448000 28940000 21507000 50448000 28940000 21507000 0 0 0 5469 1285 5591 19798 29967 29967 1 IGDVVGSSGANQQTSGK VEAYQWSVSEGRWIKIGDVVGSSGANQQTS DVVGSSGANQQTSGKVLYEGKEFDYVFSID K I G G K V 1 0 1 1 0 2 0 4 0 1 0 1 0 0 0 3 1 0 0 2 0 0 17 0 1603.7802 H0YBW4;Q9Y263;E5RIM3 H0YBW4 50 66 PLAA Phospholipase A-2-activating protein yes no 2 0.0070248 68.463 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2109100 2109100 0 2109100 2109100 0 0 0 0 5470 1097 5592 19799;19800 29968;29969 29969 2 IGEEQSAEDAEDGPPELLFIHGGHTAK SSGTDRRLNVWDLSKIGEEQSAEDAEDGPP GPPELLFIHGGHTAKISDFSWNPNEPWVIC K I G A K I 3 0 0 2 0 1 5 4 2 2 2 1 0 1 2 1 1 0 0 0 0 0 27 0 2846.3359 Q6FHQ0;Q16576;E9PC52;A8K6A2;Q5JNZ6 Q6FHQ0 349 375 RBBP7 Histone-binding protein RBBP7 yes no 3;4 1.3567E-12 107.03 7 3 0.86524 1.1064 26.849 8 Median 0.73482 0.96316 12.774 5 0 Median 1.0852 1.5923 5.532 3 0 Plateau 503150000 261630000 241520000 370990000 196650000 174340000 132170000 64989000 67177000 5471 1521 5593 19801;19802;19803;19804;19805;19806;19807;19808;19809;19810 29970;29971;29972;29973;29974;29975;29976;29977;29978;29979;29980;29981;29982;29983 29973 14 IGEEQSPEDAEDGPPELLFIHGGHTAK SSGTDRRLNVWDLSKIGEEQSPEDAEDGPP GPPELLFIHGGHTAKISDFSWNPNEPWVIC K I G A K I 2 0 0 2 0 1 5 4 2 2 2 1 0 1 3 1 1 0 0 0 0 0 27 0 2872.3515 Q09028;H0YF10;B4DRT0;H0YCT5;H0YDK2;H0YEU5 Q09028 350 376 RBBP4 Histone-binding protein RBBP4 yes no 3;4 2.1436E-13 112.55 6 1 0.76886 0.97009 21.179 7 Median 0.75369 0.95512 11.846 6 0 Median 0.99816 1.6046 NaN 1 0 Median 443770000 242020000 201760000 356570000 203630000 152940000 87205000 38384000 48821000 5472 1452 5594 19811;19812;19813;19814;19815;19816;19817 29984;29985;29986;29987;29988;29989;29990;29991;29992;29993;29994;29995;29996;29997 29990 14 IGEGTYGVVYK ______________________________ KIEKIGEGTYGVVYKGRHKTTGQVVAMKKI K I G Y K G 0 0 0 0 0 0 1 3 0 1 0 1 0 0 0 0 1 0 2 2 0 0 11 0 1184.6077 A0A024QZP7;P06493;Q5H9N4;A0A087WZZ9;I6L9I5;E5RIU6;A0A024QZJ8;B7Z3D6;K7ELV5;G3V317;E7ESI2;B4DDL9;A0A024RB10;A0A024RB77;G3V5T9;P24941;A0A024R8R3;Q00526 A0A024QZP7 10 20 CDC2;CDK1;DKFZp686L20222;CDK3;CDK2 Cyclin-dependent kinase 1;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 no no 2 7.9137E-06 120.12 1 2 0.79733 1.2172 29.566 3 Median 0.60464 0.74746 NaN 1 0 Median 0.80903 1.2454 3.2378 2 0 Median 88892000 50832000 38060000 38493000 24160000 14333000 50399000 26672000 23727000 5473 18;254 5595 19818;19819;19820 29998;29999;30000;30001 30001 4 IGEVDVEQHTLAK LGRPLPLHFLRRASKIGEVDVEQHTLAKYL SKIGEVDVEQHTLAKYLMELTMLDYDMVHF K I G A K Y 1 0 0 1 0 1 2 1 1 1 1 1 0 0 0 0 1 0 0 2 0 0 13 0 1437.7464 P14635;E9PC90;H1UBN2;Q9BWU8;Q9BWV0;Q9BWU9;Q9BPX9;H0YA62;Q9BWU7 P14635 312 324 CCNB1;CCNB1V G2/mitotic-specific cyclin-B1 yes no 2;3 1.1467E-24 178.53 8 2 0.87191 1.2181 11.874 6 Median 0.96378 1.2181 13.724 4 0 Median 0.76634 1.126 11.551 2 0 Median 200500000 126890000 73612000 167490000 108560000 58929000 33009000 18326000 14683000 5474 1268 5596 19821;19822;19823;19824;19825;19826;19827;19828;19829;19830 30002;30003;30004;30005;30006;30007;30008;30009;30010;30011;30012;30013;30014 30003 13 IGFFNQQYAEQLR LTPTHGEMRKNHRLKIGFFNQQYAEQLRME LKIGFFNQQYAEQLRMEETPTEYLQRGFNL K I G L R M 1 1 1 0 0 3 1 1 0 1 1 0 0 2 0 0 0 0 1 0 0 0 13 0 1612.7998 Q8NE71;Q2L6I2;Q59F96;H0YGW7 Q8NE71 690 702 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 2.418E-20 188.28 4 2 0.64306 0.88132 11.889 6 Median 0.63077 0.84098 8.7869 4 0 Median 0.68681 0.97743 12.138 2 0 Median 72349000 42528000 29821000 54277000 31710000 22567000 18072000 10818000 7253600 5475 1653 5597 19831;19832;19833;19834;19835;19836 30015;30016;30017;30018;30019;30020;30021;30022 30016 8 IGGGIDVPVPR RDQGGFGDRNEYGSRIGGGIDVPVPRHSVG YGSRIGGGIDVPVPRHSVGVVIGRSGEMIK R I G P R H 0 1 0 1 0 0 0 3 0 2 0 0 0 0 2 0 0 0 0 2 0 0 11 0 1078.6135 A0A087WTP3;Q92945;M0R0I5;B4DV73 A0A087WTP3 321 331 KHSRP Far upstream element-binding protein 2 yes no 2 0.012783 55.064 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7680300 4708600 2971600 4708600 4708600 0 2971600 0 2971600 5476 335 5598 19837;19838 30023;30024 30023 2 IGGIGTVPVGR PTDKPLRLPLQDVYKIGGIGTVPVGRVETG DVYKIGGIGTVPVGRVETGVLKPGMVVTFA K I G G R V 0 1 0 0 0 0 0 4 0 2 0 0 0 0 1 0 1 0 0 2 0 0 11 0 1024.6029 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;P68104;A8K9C4;Q5VTE0;Q96RE1;A0A087WVQ9;Q53GE9;Q53GA1;Q53G85;Q8IUB0;Q504Z0;Q53HR1;B4DNE0;Q9NZS6;Q53G89;Q6P4C9;B4E2C5;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q16577;Q05639;Q14222;Q59GP5 Q6IPT9 256 266 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1;EEF1A2;EEF1A Elongation factor 1-alpha;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 yes no 2 7.1055E-07 141.52 4 3 0.37566 0.51815 135.98 6 Median 0.35671 0.49205 6.7411 4 0 Median 4.1162 6.8567 2.3951 2 0 Median 3631000000 2148300000 1482700000 2784200000 1992200000 792000000 846760000 156090000 690670000 5477 1421 5599 19839;19840;19841;19842;19843;19844;19845 30025;30026;30027;30028;30029;30030;30031;30032;30033;30034;30035;30036;30037;30038;30039;30040;30041;30042;30043;30044 30028 20 IGGVQQDTILAEGLHFR VFTVEGGHRAIFFNRIGGVQQDTILAEGLH GVQQDTILAEGLHFRIPWFQYPIIYDIRAR R I G F R I 1 1 0 1 0 2 1 3 1 2 2 0 0 1 0 0 1 0 0 1 0 0 17 0 1852.9795 J3KPX7;Q99623;F5GY37;B4DW05;F5H3X6;F5H2D2;F5H0C5 J3KPX7 55 71 PHB2 Prohibitin-2 yes no 2;3 6.5562E-99 262.83 5 2 0.94646 1.4117 67.976 4 Median 0.58232 0.8027 1.0794 2 0 Median 1.5885 2.599 7.5492 2 0 Median 762580000 436040000 326540000 550350000 354440000 195920000 212230000 81604000 130620000 5478 1133 5600 19846;19847;19848;19849;19850;19851;19852 30045;30046;30047;30048;30049;30050;30051;30052;30053;30054;30055;30056 30047 12 IGHPAPNFK ______________________________ SSGNAKIGHPAPNFKATAVMPDGQFKDISL K I G F K A 1 0 1 0 0 0 0 1 1 1 0 1 0 1 2 0 0 0 0 0 0 0 9 0 979.52395 A0A0A0MSI0;Q06830;B2R4P2;A0A0A0MRQ5 A0A0A0MSI0 8 16 PRDX1 Peroxiredoxin-1 yes no 2;3 0.0061187 76.774 5 2 0.6966 0.86999 76.509 5 Median 0.67009 0.83829 12.934 4 0 Median 2.9256 4.3653 NaN 1 0 Median 147130000 85834000 61299000 126870000 82703000 44170000 20260000 3130800 17129000 5479 397 5601 19853;19854;19855;19856;19857;19858;19859 30057;30058;30059;30060;30061;30062;30063;30064;30065 30061 9 IGHVGMQIEHIIENIVAVTK TVLNISKSGSCSAIRIGHVGMQIEHIIENI MQIEHIIENIVAVTKGLSEKLPEKWESVKL R I G T K G 1 0 1 0 0 1 2 2 2 5 0 1 1 0 0 0 1 0 0 3 0 0 20 0 2200.2038 O76021;Q32Q62;J3QSV6;A0PJ61;A0PJ87;I3L3U9 O76021 216 235 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 3;4 7.8725E-21 109.08 6 4 0.40836 0.55641 35.536 9 Median 0.45768 0.57449 29.038 5 0 Median 0.3053 0.46991 31.72 4 0 Median 257680000 189930000 67754000 30960000 18433000 12528000 226720000 171490000 55226000 5480 1210 5602 19860;19861;19862;19863;19864;19865;19866;19867;19868;19869 30066;30067;30068;30069;30070;30071;30072;30073;30074;30075;30076 30073 448 8 IGIEIIK IPALDSLTPANEDQKIGIEIIKRTLKIPAM TPANEDQKIGIEIIKRTLKIPAMTIAKNAG K I G I K R 0 0 0 0 0 0 1 1 0 4 0 1 0 0 0 0 0 0 0 0 0 0 7 0 784.50584 B7Z5E7;B7Z4F6;B7Z597;B3GQS7;A0A024R3X4;P10809 B7Z5E7 407 413 HSPD1 60 kDa heat shock protein, mitochondrial yes no 2 0.011232 110.61 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5481 110 5603 19870 30077 30077 1 IGIEIIKR IPALDSLTPANEDQKIGIEIIKRTLKIPAM PANEDQKIGIEIIKRTLKIPAMTIAKNAGV K I G K R T 0 1 0 0 0 0 1 1 0 4 0 1 0 0 0 0 0 0 0 0 0 0 8 1 940.60695 B7Z5E7;B7Z4F6;B7Z597;B3GQS7;A0A024R3X4;P10809 B7Z5E7 407 414 HSPD1 60 kDa heat shock protein, mitochondrial yes no 3 0.033619 26.384 1 0.69321 0.88432 NaN 1 Median 0.69321 0.88432 NaN 1 0 Median NaN NaN NaN 0 0 Median 3398900 1749300 1649600 3398900 1749300 1649600 0 0 0 5482 110 5604 19871 30078 30078 1 IGKPHTVPCK KLSIVPVRRGYWGNKIGKPHTVPCKVTGRC YWGNKIGKPHTVPCKVTGRCGSVLVRLIPA K I G C K V 0 0 0 0 1 0 0 1 1 1 0 2 0 0 2 0 1 0 0 1 0 0 10 1 1135.6172 P15880;Q8J014;Q8N5L9;Q6IPX5;Q3KQT6;H0YEN5;I3L404;E9PMM9;E9PPT0;Q8NI61;E9PM36 P15880 174 183 RPS2;rps2;OK/KNS-cl.7 40S ribosomal protein S2 yes no 2;3 1.6879E-08 138.08 8 3 0.72859 0.89495 28.154 10 Median 0.74393 0.91171 16.242 7 0 Median 0.36839 0.58231 2.0201 3 0 Median 506980000 289410000 217560000 477560000 268180000 209380000 29412000 21231000 8181100 5483 1269 5605 19872;19873;19874;19875;19876;19877;19878;19879;19880;19881;19882 30079;30080;30081;30082;30083;30084;30085;30086;30087;30088;30089;30090;30091;30092;30093;30094;30095;30096 30084 18 IGLETSLR EDVEMSEDAYTVLTRIGLETSLRYAIQLIT AYTVLTRIGLETSLRYAIQLITAASLVCRK R I G L R Y 0 1 0 0 0 0 1 1 0 1 2 0 0 0 0 1 1 0 0 0 0 0 8 0 887.50763 Q9Y230;B3KNL2 Q9Y230 393 400 RUVBL2 RuvB-like 2 yes no 2 0.016332 79.713 1 1 0.75007 1.0203 NaN 1 Median 0.75007 1.0203 NaN 1 0 Median NaN NaN NaN 0 0 Median 193840000 94830000 99013000 174280000 94830000 79451000 19563000 0 19563000 5484 1801 5606 19883;19884 30097;30098 30098 2 IGLFNSSADR MLDDSSDPILTTIRRIGLFNSSADRVKVIF TTIRRIGLFNSSADRVKVIFHPEFLSSTSP R I G D R V 1 1 1 1 0 0 0 1 0 1 1 0 0 1 0 2 0 0 0 0 0 0 10 0 1078.5407 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6;B7Z255 P13807 463 472 GYS1 Glycogen [starch] synthase, muscle yes no 2 0.0022016 87.308 3 2 0.64674 0.89854 75.117 5 Median 0.74954 1.0039 8.3188 3 0 Median 0.16074 0.25129 7.6919 2 0 Median 93575000 69073000 24502000 40330000 23382000 16948000 53245000 45691000 7553800 5485 1265 5607 19885;19886;19887;19888;19889 30099;30100;30101;30102;30103;30104 30102 6 IGLFSHAEIK ERIEDRLPELEQLERIGLFSHAEIKAIIKK EQLERIGLFSHAEIKAIIKKASDLEYKIQR R I G I K A 1 0 0 0 0 0 1 1 1 2 1 1 0 1 0 1 0 0 0 0 0 0 10 0 1113.6182 B3KQ21;Q9NYH9;B4DSL9;B7Z9G4 B3KQ21 22 31 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 3 0.00429 79.489 1 1.0978 1.3928 NaN 1 Median 1.0978 1.3928 NaN 1 0 Median NaN NaN NaN 0 0 Median 6027800 4218400 1809400 6027800 4218400 1809400 0 0 0 5486 768 5608 19890 30105;30106 30105 2 IGLIQFCLSAPK QKVSNSGITRVEKAKIGLIQFCLSAPKTDM KAKIGLIQFCLSAPKTDMDNQIVVSDYAQM K I G P K T 1 0 0 0 1 1 0 1 0 2 2 1 0 1 1 1 0 0 0 0 0 0 12 0 1345.7428 B7Z9L0;B7Z2Z8;A8K3C3;P50991;B7Z2F4 B7Z9L0 190 201 CCT4 T-complex protein 1 subunit delta yes no 2 2.723E-05 106.88 2 0.37944 0.47467 NaN 1 Median 0.37944 0.47467 NaN 1 0 Median NaN NaN NaN 0 0 Median 11817000 9438100 2378400 11817000 9438100 2378400 0 0 0 5487 593 5609 19891;19892 30107;30108 30108 2 IGLIQGNR APAAGMNAAVRSTVRIGLIQGNRVLVVHDG AVRSTVRIGLIQGNRVLVVHDGFEGLAKGQ R I G N R V 0 1 1 0 0 1 0 2 0 2 1 0 0 0 0 0 0 0 0 0 0 0 8 0 869.5083 A0A024R0Y5;P08237;A0A0S2Z4A1;Q96I60;A0A0S2Z4I1;B4E162;A0A0S2Z4A8;Q7KYX9;F8VP00;P78457 A0A024R0Y5 425 432 PFKM ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type yes no 2 0.0034797 111.69 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5488 44 5610 19893;19894 30109;30110 30110 2 IGLLTR DLPTRHKIRELTSSRIGLLTRISGQVVRTH KIRELTSSRIGLLTRISGQVVRTHPVHPEL R I G T R I 0 1 0 0 0 0 0 1 0 1 2 0 0 0 0 0 1 0 0 0 0 0 6 0 671.43301 Q4ZG57;Q14566 Q4ZG57 95 100 MCM6 DNA replication licensing factor MCM6 yes no 2 0.045316 74.517 1 0.4549 0.61624 NaN 1 Median 0.4549 0.61624 NaN 1 0 Median NaN NaN NaN 0 0 Median 8425700 6131400 2294200 8425700 6131400 2294200 0 0 0 5489 1488 5611 19895 30111 30111 1 IGNCPFSQR PQVELFVKAGSDGAKIGNCPFSQRLFMVLW GSDGAKIGNCPFSQRLFMVLWLKGVTFNVT K I G Q R L 0 1 1 0 1 1 0 1 0 1 0 0 0 1 1 1 0 0 0 0 0 0 9 0 1077.5026 Q5SRT3;Q53FB0;O00299 Q5SRT3 21 29 CLIC1 Chloride intracellular channel protein;Chloride intracellular channel protein 1 yes no 2 0.00027888 93.162 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6122200 6122200 0 6122200 6122200 0 0 0 0 5490 1166 5612 19896 30112 30112 1 IGNVEISQVTIVGIIR ISQLLSATLVDEVFRIGNVEISQVTIVGII GNVEISQVTIVGIIRHAEKAPTNIVYKIDD R I G I R H 0 1 1 0 0 1 1 2 0 5 0 0 0 0 0 1 1 0 0 3 0 0 16 0 1710.004 Q5TEJ7;B4DQD9;B2R7E8;P15927 Q5TEJ7 70 85 RPA2 Replication protein A 32 kDa subunit yes no 2 2.103E-13 147.33 4 0.57482 0.81413 12.325 3 Median 0.57482 0.81413 12.325 3 0 Median NaN NaN NaN 0 0 Median 12390000 9142400 3247400 12390000 9142400 3247400 0 0 0 5491 705 5613 19897;19898;19899;19900 30113;30114;30115;30116;30117 30114 5 IGPILDNSTLQSEVKPILEK PVANVRFNVAKSLQKIGPILDNSTLQSEVK DNSTLQSEVKPILEKLTQDQDVDVKYFAQE K I G E K L 0 0 1 1 0 1 2 1 0 3 3 2 0 0 2 2 1 0 0 1 0 0 20 1 2193.2256 B4DQY1;B4DDF7;A8K7B7;A8K3H8;P30153;B3KQV6;Q8NB89;B4DE69;E9PH38;B4E1Q0 B4DQY1 513 532 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 3 5.6391E-20 148.36 4 2 0.58697 0.7649 18.351 6 Median 0.58697 0.72204 11.936 4 0 Median 0.58424 0.93921 9.8096 2 0 Median 134430000 73693000 60739000 62538000 37343000 25195000 71894000 36350000 35544000 5492 595 5614 19901;19902;19903;19904;19905;19906 30118;30119;30120;30121;30122;30123;30124;30125;30126;30127;30128;30129 30118 12 IGPLGLSPK CTGGEVGATSALAPKIGPLGLSPKKVGDDI SALAPKIGPLGLSPKKVGDDIAKATGDWKG K I G P K K 0 0 0 0 0 0 0 2 0 1 2 1 0 0 2 1 0 0 0 0 0 0 9 0 880.5382 P30050;Q59FI9;D3DS95;Q76P68 P30050 32 40 RPL12;hCG_21173;cICK0721Q.2 60S ribosomal protein L12 yes no 2 0.0012387 102 4 1 0.79995 1.0403 8.0277 5 Median 0.80944 1.0552 3.5314 4 0 Median 0.57055 0.8957 NaN 1 0 Median 447010000 256120000 190880000 373420000 209110000 164310000 73583000 47011000 26572000 5493 1307 5615 19907;19908;19909;19910;19911 30130;30131;30132;30133;30134;30135;30136;30137 30135 8 IGPYQPNVPVGIDYVIPK SDENKDDYTIPDEYRIGPYQPNVPVGIDYV YQPNVPVGIDYVIPKTGFYCKLCSLFYTNE R I G P K T 0 0 1 1 0 1 0 2 0 3 0 1 0 0 4 0 0 0 2 3 0 0 18 0 1968.072 A0A0R4J2E8;A8MXP9;P43243;Q68D11;Q5CZA7;B3KM87;B4DRS1;Q9H4N1;Q68E03 A0A0R4J2E8 781 798 MATR3;DKFZp686K23100;DKFZp686K0542;DKFZp686L22104 Matrin-3 yes no 2 0.023068 52.79 1 0.67302 0.84801 NaN 1 Median 0.67302 0.84801 NaN 1 0 Median NaN NaN NaN 0 0 Median 2985900 1932200 1053700 2985900 1932200 1053700 0 0 0 5494 445 5616 19912 30138 30138 1 IGQGASGTVFTATDVALGQEVAIK VSIGDPKKKYTRYEKIGQGASGTVFTATDV FTATDVALGQEVAIKQINLQKQPKKELIIN K I G I K Q 4 0 0 1 0 2 1 4 0 2 1 1 0 1 0 1 3 0 0 3 0 0 24 0 2332.2274 A8K5M4;Q13177 A8K5M4 255 278 PAK2 Non-specific serine/threonine protein kinase;Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes no 2 2.2905E-11 183.23 3 0.36736 0.46813 17.978 2 Median 0.36736 0.46813 17.978 2 0 Median NaN NaN NaN 0 0 Median 10059000 6553200 3506100 10059000 6553200 3506100 0 0 0 5495 618 5617 19913;19914;19915 30139;30140;30141 30140 3 IGQGYLIK KGYHHRTEINKKIYKIGQGYLIKDGKLIKN INKKIYKIGQGYLIKDGKLIKNNASTDYDL K I G I K D 0 0 0 0 0 1 0 2 0 2 1 1 0 0 0 0 0 0 1 0 0 0 8 0 890.52255 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;B3KS36;Q49AJ9;Q9BT63;B5MCW2 P39023 287 294 RPL3;rpl3 60S ribosomal protein L3 yes no 2 0.00020086 134.66 4 0.75528 0.99317 3.1042 4 Median 0.75528 0.99317 3.1042 4 0 Median NaN NaN NaN 0 0 Median 604700000 351590000 253110000 604700000 351590000 253110000 0 0 0 5496 1330 5618 19916;19917;19918;19919 30142;30143;30144;30145;30146;30147 30145 6 IGQQPQQPGAPPQQDYTK GQSDYTKAWEEYYKKIGQQPQQPGAPPQQD QPQQPGAPPQQDYTKAWEEYYKKQAQVATG K I G T K A 1 0 0 1 0 6 0 2 0 1 0 1 0 0 4 0 1 0 1 0 0 0 18 0 1979.9701 A0A087WTP3;Q92945;M0QYG1;M0R0C6 A0A087WTP3 629 646 KHSRP Far upstream element-binding protein 2 yes no 2 0.00034874 109 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5497 335 5619 19920 30148 30148 1 IGRIEDVTPIPSDSTR GAQSALRALARSGMKIGRIEDVTPIPSDST GRIEDVTPIPSDSTRRKGGRRGRRL_____ K I G T R R 0 2 0 2 0 0 1 1 0 3 0 0 0 0 2 2 2 0 0 1 0 0 16 1 1754.9163 P62263 P62263 126 141 RPS14 40S ribosomal protein S14 yes yes 3 4.3949E-07 60.631 3 2 0.80935 1.1215 36.951 5 Median 0.83951 1.1448 1.7651 3 0 Median 0.37163 0.58373 6.6074 2 0 Median 391350000 231020000 160330000 290030000 157460000 132570000 101320000 73564000 27753000 5498 1401 5620 19921;19922;19923;19924;19925 30149;30150;30151;30152;30153;30154;30155;30156;30157 30156 9 IGRPSETGIIGIIDPECR SIDIITRAHGNVQDRIGRPSETGIIGIIDP PSETGIIGIIDPECRMIGLRLYDGLFKVIP R I G C R M 0 2 0 1 1 0 2 3 0 5 0 0 0 0 2 1 1 0 0 0 0 0 18 1 1982.0255 Q16531;F5GY55;B7Z2A1;F5H2L3;F5GWI0;F5GZY8 Q16531 112 129 DDB1 DNA damage-binding protein 1 yes no 3 1.4938E-10 106.31 4 2 0.82818 1.1205 7.1924 6 Median 0.8416 1.153 4.0667 4 0 Median 0.65996 1.0238 2.3773 2 0 Median 301600000 165640000 135960000 226440000 120170000 106270000 75155000 45462000 29693000 5499 1520 5621 19926;19927;19928;19929;19930;19931 30158;30159;30160;30161;30162;30163;30164;30165;30166;30167;30168;30169 30163 12 IGSCTQQDVELHVQK SIVDVEGVVRKVNQKIGSCTQQDVELHVQK IGSCTQQDVELHVQKIYVISLAEPRLPLQL K I G Q K I 0 0 0 1 1 3 1 1 1 1 1 1 0 0 0 1 1 0 0 2 0 0 15 0 1740.8465 D3DP78;A0A140VJW5;P14868;C9J7S3;C9JLC1;Q53R85;C9JQM9;H7C278 D3DP78 94 108 DARS Aspartate--tRNA ligase, cytoplasmic yes no 3 7.4694E-08 86.498 3 0.38912 0.48309 15.115 2 Median 0.38912 0.48309 15.115 2 0 Median NaN NaN NaN 0 0 Median 48367000 38108000 10258000 48367000 38108000 10258000 0 0 0 5500 504 5622 19932;19933;19934 30170;30171;30172;30173;30174;30175 30175 6 IGSFAEPSSVSFSSK PQVHNTTSRELNVSKIGSFAEPSSVSFSSK IGSFAEPSSVSFSSKEALSFPHLHLRGQRN K I G S K E 1 0 0 0 0 0 1 1 0 1 0 1 0 2 1 6 0 0 0 1 0 0 15 0 1528.7409 Q03164 Q03164 2348 2362 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 2.6598E-05 91.093 2 1 1.0265 1.4266 5.7163 3 Median 1.0698 1.367 6.0358 2 0 Median 0.96536 1.46 NaN 1 0 Median 34013000 16396000 17617000 19071000 8547000 10524000 14942000 7849300 7093100 5501 1438 5623 19935;19936;19937 30176;30177;30178;30179;30180 30179 5 IGSFTIQNVFPQSDGDSSK AFYTNLHEVPYPDARIGSFTIQNVFPQSDG TIQNVFPQSDGDSSKVKVKVRVNIHGIFSV R I G S K V 0 0 1 2 0 2 0 2 0 2 0 1 0 2 1 4 1 0 0 1 0 0 19 0 2025.9643 D6RJ96;B3KNM0;E9PDE8;B4DXT2;Q53ZP9;A0A140VKE7;O95757 D6RJ96 418 436 HSPA4L Heat shock 70 kDa protein 4L yes no 2 0.002663 67.095 2 0.20338 0.26307 NaN 1 Median 0.20338 0.26307 NaN 1 0 Median NaN NaN NaN 0 0 Median 4815700 4577800 237930 4815700 4577800 237930 0 0 0 5502 513 5624 19938;19939 30181;30182 30181 2 IGSLASGNVR APKPQDKKSMGLPPRIGSLASGNVRSLPSQ GLPPRIGSLASGNVRSLPSQQMVNRLSIPK R I G V R S 1 1 1 0 0 0 0 2 0 1 1 0 0 0 0 2 0 0 0 1 0 0 10 0 972.53524 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 287 296 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.0012247 95.502 3 2 0.97523 1.3137 27.897 5 Median 0.69021 0.91941 23.34 3 0 Median 1.0765 1.5189 1.4312 2 0 Median 72255000 40356000 31900000 59534000 33973000 25561000 12721000 6382500 6338900 5503 729 5625 19940;19941;19942;19943;19944 30183;30184;30185;30186;30187;30188;30189 30185 7 IGSLIDVNQSK EIVIGDEHISFTTSKIGSLIDVNQSKDPEG TTSKIGSLIDVNQSKDPEGLRVFYYLVQDL K I G S K D 0 0 1 1 0 1 0 1 0 2 1 1 0 0 0 2 0 0 0 1 0 0 11 0 1172.6401 F5H6P7;A0A023T6R1;P61326;Q96A72 F5H6P7 60 70 MAGOHB;FLJ10292;MAGOH Protein mago nashi homolog;Protein mago nashi homolog 2 yes no 2 0.00060567 90.108 2 0.49106 0.62202 31.571 2 Median 0.49106 0.62202 31.571 2 0 Median NaN NaN NaN 0 0 Median 15867000 9544800 6321900 15867000 9544800 6321900 0 0 0 5504 1 5626 19945;19946 30190;30191 30190 1 IGTFDLK NAVYDFFIGRELNPRIGTFDLKYFCELRPG IGRELNPRIGTFDLKYFCELRPGLIGWVVI R I G L K Y 0 0 0 1 0 0 0 1 0 1 1 1 0 1 0 0 1 0 0 0 0 0 7 0 792.43815 A0A024R3R5 A0A024R3R5 378 384 LBR no no 2 0.035867 57.281 1 0.61332 0.77095 NaN 1 Median 0.61332 0.77095 NaN 1 0 Median NaN NaN NaN 0 0 Median 15489000 8941900 6547100 15489000 8941900 6547100 0 0 0 5505 106 5627 19947 30192 30192 1 IGTSTSFDSGIAGLSSISQCTSSSQLDETSHR ELSTSLKRSVYIESRIGTSTSFDSGIAGLS SQCTSSSQLDETSHRWAQPDTAPLPVPANI R I G H R W 1 1 0 2 1 2 1 3 1 3 2 0 0 1 0 10 4 0 0 0 0 0 32 0 3315.5161 O95235 O95235 251 282 KIF20A Kinesin-like protein KIF20A yes yes 3 2.191E-54 156.2 4 2 0.82333 1.113 32.109 6 Median 0.83363 1.1319 1.9383 4 0 Median 0.38215 0.60995 7.2216 2 0 Median 216370000 134880000 81486000 134860000 74284000 60576000 81511000 60601000 20910000 5506 1215 5628 19948;19949;19950;19951;19952;19953 30193;30194;30195;30196;30197;30198;30199;30200;30201;30202;30203;30204 30193 12 IGVAILQR DYEAVFVGNIDDHFRIGVAILQRSIRLYAP NIDDHFRIGVAILQRSIRLYAPFYSSDILI R I G Q R S 1 1 0 0 0 1 0 1 0 2 1 0 0 0 0 0 0 0 0 1 0 0 8 0 868.54944 A8K0P8;Q68CQ4;H7C2R4 A8K0P8 427 434 DIEXF Digestive organ expansion factor homolog yes no 2 0.00021178 122.15 1 0.47535 0.68525 NaN 1 Median NaN NaN NaN 0 0 Median 0.47535 0.68525 NaN 1 0 Median 8684100 6465000 2219200 0 0 0 8684100 6465000 2219200 5507 577 5629 19954 30205 30205 1 IGVFSK DKMIEAIKESKNGKKIGVFSKDKFPGEFMK IKESKNGKKIGVFSKDKFPGEFMKSWNDCL K I G S K D 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 1 0 0 0 1 0 0 6 0 649.37991 Q9Y5B9;Q0VGA3 Q9Y5B9 134 139 SUPT16H FACT complex subunit SPT16 yes no 2 0.041021 77.748 2 0.82948 1.0561 7.3625 2 Median 0.82948 1.0561 7.3625 2 0 Median NaN NaN NaN 0 0 Median 160630000 92730000 67899000 160630000 92730000 67899000 0 0 0 5508 1829 5630 19955;19956 30206;30207 30206 2 IGVITNR TGNLCMVTGGANLGRIGVITNRERHPGSFD TGGANLGRIGVITNRERHPGSFDVVHVKDA R I G N R E 0 1 1 0 0 0 0 1 0 2 0 0 0 0 0 0 1 0 0 1 0 0 7 0 771.46029 B2R491;P62701;Q96IR1;Q53HV1 B2R491 192 198 RPS4X 40S ribosomal protein S4;40S ribosomal protein S4, X isoform yes no 2 3.8165E-13 177.57 4 1 0.77796 1.0665 15.681 5 Median 0.78192 1.0774 1.8462 4 0 Median 0.4561 0.75894 NaN 1 0 Median 963430000 552770000 410660000 812670000 451160000 361510000 150770000 101610000 49157000 5509 681 5631 19957;19958;19959;19960;19961 30208;30209;30210;30211;30212;30213;30214;30215;30216 30214 9 IGVLDEGK RRLFEGNALLRRLVRIGVLDEGKMKLDYIL LLRRLVRIGVLDEGKMKLDYILGLKIEDFL R I G G K M 0 0 0 1 0 0 1 2 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 829.45453 A0A024R4M0;P46781;B5MCT8;C9JM19;B7Z732;A5D904 A0A024R4M0 84 91 RPS9 40S ribosomal protein S9 yes no 2 0.005579 108.09 4 2 0.80666 1.0624 12.46 6 Median 0.815 1.0703 2.2201 4 0 Median 0.53712 0.84945 0.26583 2 0 Median 1495000000 833540000 661440000 1251500000 679270000 572180000 243520000 154270000 89254000 5510 124 5632 19962;19963;19964;19965;19966;19967 30217;30218;30219;30220;30221;30222;30223;30224;30225;30226 30220 10 IGVMSLIR GVPREGLSRQHVLTRIGVMSLIRKKVQEFE RQHVLTRIGVMSLIRKKVQEFEHVNGRWSM R I G I R K 0 1 0 0 0 0 0 1 0 2 1 0 1 0 0 1 0 0 0 1 0 0 8 0 887.52626 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 1470 1477 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.0041608 80.229 1 2 0.98961 1.5317 3.6759 2 Median NaN NaN NaN 0 0 Median 0.98961 1.5317 3.6759 2 0 Median 44995000 22687000 22308000 0 0 0 44995000 22687000 22308000 5511 428 5633;5634 19968;19969;19970 30227;30228;30229 30229 145 3 IGVPSATEIIK QLVQVEQKAGIKFKRIGVPSATEIIKASSK KFKRIGVPSATEIIKASSKDAIRLLDSVPP R I G I K A 1 0 0 0 0 0 1 1 0 3 0 1 0 0 1 1 1 0 0 1 0 0 11 0 1126.6598 Q9NR30 Q9NR30 563 573 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.030215 68.846 2 0.60772 0.77069 6.1062 2 Median 0.60772 0.77069 6.1062 2 0 Median NaN NaN NaN 0 0 Median 26378000 16985000 9392900 26378000 16985000 9392900 0 0 0 5512 1756 5635 19971;19972 30230;30231;30232 30230 3 IGYSSPLTLSDQSSK LELTAEISCFTYGCRIGYSSPLTLSDQSSK IGYSSPLTLSDQSSKIKKGGKGDCTVLKPT R I G S K I 0 0 0 1 0 1 0 1 0 1 2 1 0 0 1 5 1 0 1 0 0 0 15 0 1581.7886 B4DH39;Q8TAF6;O60488 B4DH39 279 293 FACL4;ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 2 4.8328E-08 138.2 3 0.5486 0.68736 25.201 3 Median 0.5486 0.68736 25.201 3 0 Median NaN NaN NaN 0 0 Median 19458000 12573000 6885800 19458000 12573000 6885800 0 0 0 5513 806 5636 19973;19974;19975 30233;30234;30235;30236;30237;30238 30234 6 IGYSSPQTLADQSSK LELSAELVCLSHGCRIGYSSPQTLADQSSK IGYSSPQTLADQSSKIKKGSKGDTSMLKPT R I G S K I 1 0 0 1 0 2 0 1 0 1 1 1 0 0 1 4 1 0 1 0 0 0 15 0 1580.7682 B3KN05;B2RBE0;A0A024R497;O95573;B3KMA6 B3KN05 338 352 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes no 2 5.641E-09 163.45 3 0.44465 0.56451 NaN 1 Median 0.44465 0.56451 NaN 1 0 Median NaN NaN NaN 0 0 Median 17220000 13910000 3310100 17220000 13910000 3310100 0 0 0 5514 118 5637 19976;19977;19978 30239;30240;30241;30242 30240 4 IHAGPITK HIDLPNEQARLDILKIHAGPITKHGEIDYE ARLDILKIHAGPITKHGEIDYEAIVKLSDG K I H T K H 1 0 0 0 0 0 0 1 1 2 0 1 0 0 1 0 1 0 0 0 0 0 8 0 835.49159 V9HW24;A0A087X2I1;P62333 V9HW24 315 322 HEL-S-73;PSMC6 26S protease regulatory subunit 10B yes no 2 0.0078715 79.469 1 0.34273 0.43344 NaN 1 Median 0.34273 0.43344 NaN 1 0 Median NaN NaN NaN 0 0 Median 11888000 7313200 4575200 11888000 7313200 4575200 0 0 0 5515 379 5638 19979 30243 30243 1 IHCLENVDK LSGERLPKPTKGRMRIHCLENVDKALQFLK TKGRMRIHCLENVDKALQFLKEQRVHLENM R I H D K A 0 0 1 1 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1126.5441 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;F8W6C1;O15020;A4QPE4;B2RMN7;A0A024R674;Q59FP5;P11277 B2ZZ89 110 118 SPTBN1;SPTBN2;SPTB Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2;Spectrin beta chain, erythrocytic yes no 2 0.00016002 120.15 3 0.87249 1.1226 76.399 3 Median 0.87249 1.1226 76.399 3 0 Median NaN NaN NaN 0 0 Median 29078000 18854000 10225000 29078000 18854000 10225000 0 0 0 5516 346 5639 19980;19981;19982 30244;30245;30246;30247 30247 4 IHCSVHNIIIPEDFSIADK FKSSAVQQLLEKNYRIHCSVHNIIIPEDFS VHNIIIPEDFSIADKIQQILTSTGFSDKRA R I H D K I 1 0 1 2 1 0 1 0 2 5 0 1 0 1 1 2 0 0 0 1 0 0 19 0 2207.1045 A8K9K8;Q9UNQ2 A8K9K8 257 275 DIMT1 Probable dimethyladenosine transferase yes no 3 0.031838 15.09 1 1.1401 1.445 NaN 1 Median 1.1401 1.445 NaN 1 0 Median NaN NaN NaN 0 0 Median 6073200 3207100 2866100 6073200 3207100 2866100 0 0 0 5517 648 5640 19983 30248 30248 1 IHDPQLLTER DMFMRGEEILSGAQRIHDPQLLTERALHHG SGAQRIHDPQLLTERALHHGIDLEKIKAYI R I H E R A 0 1 0 1 0 1 1 0 1 1 2 0 0 0 1 0 1 0 0 0 0 0 10 0 1220.6513 D3DP78;A0A140VJW5;P14868;Q53T60;H7BZ35 D3DP78 399 408 DARS Aspartate--tRNA ligase, cytoplasmic yes no 3 0.0043457 40.715 1 2 0.87975 1.1517 97.425 2 Median 0.43704 0.57831 NaN 1 0 Median 1.7709 2.2937 NaN 1 0 Median 15274000 7608400 7665500 9317400 6291000 3026400 5956500 1317400 4639100 5518 504 5641 19984;19985;19986 30249;30250;30251 30249 3 IHFFLSK TIAQGKGQKLCEIERIHFFLSKKKTDELRN QKLCEIERIHFFLSKKKTDELRNLHKLLYN R I H S K K 0 0 0 0 0 0 0 0 1 1 1 1 0 2 0 1 0 0 0 0 0 0 7 0 890.50142 B4DNW3;P35659;B4DFG0;D6RDA2;D6R9L5 P35659 94 100 DEK Protein DEK no no 2 0.0055552 123.99 4 3 0.82125 1.0388 11.576 7 Median 0.83111 1.0808 4.8978 4 0 Median 0.61471 0.97236 10.627 3 0 Plateau 602520000 336550000 265970000 350510000 179710000 170800000 252010000 156830000 95171000 5519 1322;843 5642 19987;19988;19989;19990;19991;19992;19993 30252;30253;30254;30255;30256;30257;30258;30259;30260;30261;30262;30263;30264;30265;30266;30267;30268 30255 17 IHFGQITSNQMLVPVIEK SDVELICRCLFFLLRIHFGQITSNQMLVPV GQITSNQMLVPVIEKLRETTISKVSQVRDV R I H E K L 0 0 1 0 0 2 1 1 1 3 1 1 1 1 1 1 1 0 0 2 0 0 18 0 2053.103 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 862 879 WDR3 WD repeat-containing protein 3 yes no 3 0.0001101 46.514 1 0.47311 0.71403 NaN 1 Median NaN NaN NaN 0 0 Median 0.47311 0.71403 NaN 1 0 Median 16040000 9403100 6637100 0 0 0 16040000 9403100 6637100 5520 1576 5643 19994 30269 30269 717 1 IHFPDFSTR DYNPNKTNRPFISQKIHFPDFSTRDIHRNY PFISQKIHFPDFSTRDIHRNYVDCVRWLGD K I H T R D 0 1 0 1 0 0 0 0 1 1 0 0 0 2 1 1 1 0 0 0 0 0 9 0 1118.5509 O75530;B4DVW7 O75530 294 302 EED Polycomb protein EED yes no 2;3 0.0012634 75.378 4 1 0.86599 1.1736 12.452 5 Median 0.87477 1.1831 12.08 4 0 Median 0.77093 0.99251 NaN 1 0 Median 42589000 21636000 20952000 37602000 18376000 19226000 4986700 3260700 1726000 5521 1203 5644 19995;19996;19997;19998;19999 30270;30271;30272;30273;30274;30275;30276;30277;30278;30279 30275 10 IHFPLATYAPVISAEK VDLTEFQTNLVPYPRIHFPLATYAPVISAE HFPLATYAPVISAEKAYHEQLSVAEITNAC R I H E K A 3 0 0 0 0 0 1 0 1 2 1 1 0 1 2 1 1 0 1 1 0 0 16 0 1755.956 B3KT06;P68363;B3KPS3;B4DDU2;F8VVB9;C9JDS9;Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;P68366;Q71U36;B4DQK4;Q1ZYQ1;Q13748;Q9UQM3;Q6PEY2 B3KT06 230 245 TUBA1B;TUBA4A;TUBA1C;TUBA1A;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 2;3 3.1324E-10 136.38 8 3 0.47632 0.61541 110.22 10 Median 0.44315 0.57413 8.6103 7 0 Median 3.6443 5.8385 2.5245 3 0 Median 1770900000 1059800000 711130000 1389100000 973700000 415370000 381850000 86082000 295770000 5522 777;1422;1607;1056 5645 20000;20001;20002;20003;20004;20005;20006;20007;20008;20009;20010 30280;30281;30282;30283;30284;30285;30286;30287;30288;30289;30290;30291;30292;30293;30294;30295;30296;30297;30298 30283 19 IHGSPLQK TKVLYDFNKILENGRIHGSPLQKLVIANFD KILENGRIHGSPLQKLVIANFDDEQIWQQL R I H Q K L 0 0 0 0 0 1 0 1 1 1 1 1 0 0 1 1 0 0 0 0 0 0 8 0 878.4974 B3KPV5;O00566;U3KQ48 B3KPV5 58 65 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 2 0.0203 93.195 1 0.40056 0.5014 NaN 1 Median 0.40056 0.5014 NaN 1 0 Median NaN NaN NaN 0 0 Median 15942000 8474100 7467600 15942000 8474100 7467600 0 0 0 5523 767 5646 20011 30299 30299 0 IHGTEEGQQILK LQLQDCSIFIKIIDRIHGTEEGQQILKQPV IDRIHGTEEGQQILKQPVSERLDFVCSFLQ R I H L K Q 0 0 0 0 0 2 2 2 1 2 1 1 0 0 0 0 1 0 0 0 0 0 12 0 1351.7096 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;F5H0Z7;F5H763;Q86XH4;G1UI36;F5H2F3;F5H3L6;F5GZW1;F5H1L0;F8W6T3;F5GWK2;F5H073;F5H068;F5H7R5;F5H4Y4;F5GWA2;A8K394;Q4LE64;Q14980 Q4LE64 43 54 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2;3 7.9881E-11 130.01 5 1 0.67112 0.84737 39.899 6 Median 0.69223 0.87947 11.334 5 0 Median 0.2357 0.32689 NaN 1 0 Median 61998000 35954000 26044000 56376000 31744000 24633000 5621500 4210400 1411100 5524 148;1499;590 5647 20012;20013;20014;20015;20016;20017 30300;30301;30302;30303;30304;30305;30306;30307;30308 30305 9 IHGVGFK NEVVTREYTINIHKRIHGVGFKKRAPRALK YTINIHKRIHGVGFKKRAPRALKEIRKFAM R I H F K K 0 0 0 0 0 0 0 2 1 1 0 1 0 1 0 0 0 0 0 1 0 0 7 0 756.42826 H7C2W9;C9JU56;B7Z4E3;B2R4C1;B7Z4C8;P62899;B8ZZK4 H7C2W9 21 27 RPL31 60S ribosomal protein L31 yes no 2 0.014431 95.378 3 2 0.94378 1.2264 46.021 5 Median 0.95674 1.2522 2.7159 3 0 Median 0.34324 0.54313 1.5253 2 0 Median 619350000 356930000 262410000 404670000 198780000 205900000 214670000 158160000 56514000 5525 682 5648 20018;20019;20020;20021;20022 30309;30310;30311;30312;30313;30314;30315;30316 30313 8 IHGVGFKK NEVVTREYTINIHKRIHGVGFKKRAPRALK TINIHKRIHGVGFKKRAPRALKEIRKFAMK R I H K K R 0 0 0 0 0 0 0 2 1 1 0 2 0 1 0 0 0 0 0 1 0 0 8 1 884.52322 H7C2W9;C9JU56;B7Z4E3;B2R4C1;B7Z4C8;P62899;B8ZZK4 H7C2W9 21 28 RPL31 60S ribosomal protein L31 yes no 2 0.0047481 99.384 3 0.93741 1.1466 3.375 3 Median 0.93741 1.1466 3.375 3 0 Median NaN NaN NaN 0 0 Median 85094000 41374000 43720000 85094000 41374000 43720000 0 0 0 5526 682 5649 20023;20024;20025 30317;30318;30319;30320 30320 4 IHIDLPNEQAR TLDPALLRPGRLDRKIHIDLPNEQARLDIL LDRKIHIDLPNEQARLDILKIHAGPITKHG K I H A R L 1 1 1 1 0 1 1 0 1 2 1 0 0 0 1 0 0 0 0 0 0 0 11 0 1304.6837 V9HW24;A0A087X2I1;P62333 V9HW24 299 309 HEL-S-73;PSMC6 26S protease regulatory subunit 10B yes no 2;3 0.013425 54.608 2 4.3575 5.5386 NaN 1 Median NaN NaN NaN 0 0 Median 4.3575 5.5386 NaN 1 0 Median 6680300 626610 6053700 0 0 0 6680300 626610 6053700 5527 379 5650 20026;20027 30321;30322 30322 2 IHIFFR EAAHPIRLFCRYIDRIHIFFRFTADEARDL RLFCRYIDRIHIFFRFTADEARDLIQRYLT R I H F R F 0 1 0 0 0 0 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 6 0 831.47554 Q6P2Q9 Q6P2Q9 1095 1100 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.045449 74.417 1 0.60727 0.82065 NaN 1 Median 0.60727 0.82065 NaN 1 0 Median NaN NaN NaN 0 0 Median 32160000 19491000 12670000 32160000 19491000 12670000 0 0 0 5528 1592 5651 20028 30323 30323 1 IHISQEDNVANK IFSPANRRRGRPPKRIHISQEDNVANKQTL PKRIHISQEDNVANKQTLASYRSKATKERD R I H N K Q 1 0 2 1 0 1 1 0 1 2 0 1 0 0 0 1 0 0 0 1 0 0 12 0 1366.6841 D3DS96;Q9NRL2;Q05CW0;Q32ND1 D3DS96 283 294 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 0.00034717 120.45 1 2 0.70973 0.97343 27.056 3 Median 1.0048 1.303 NaN 1 0 Median 0.64031 0.85949 17.605 2 0 Median 7648100 4567600 3080400 1769800 878400 891370 5878300 3689200 2189100 5529 979 5652 20029;20030;20031 30324;30325;30326;30327;30328 30324 5 IHNAENIQPGEQK RPEEADETWDSKEDKIHNAENIQPGEQKYE DKIHNAENIQPGEQKYEYKSDQWKPLNLEE K I H Q K Y 1 0 2 0 0 2 2 1 1 2 0 1 0 0 1 0 0 0 0 0 0 0 13 0 1476.7321 E7EX73;B4DSI9;E9PGM1;E7EUU4;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637;C9JF13;C9J6B6;C9K073;C9J2Z7 E7EX73 417 429 EIF4G1;EIF4G1 variant protein Eukaryotic translation initiation factor 4 gamma 1 yes no 2;3 2.3986E-41 218.94 5 0.33634 0.43515 4.0039 2 Median 0.33634 0.43515 4.0039 2 0 Median NaN NaN NaN 0 0 Median 33864000 31715000 2148600 33864000 31715000 2148600 0 0 0 5530 747 5653 20032;20033;20034;20035;20036 30329;30330;30331;30332;30333;30334 30331 6 IHNIDIPTTQQVPHIEALLK EEARLKEAQLRNELKIHNIDIPTTQQVPHI IPTTQQVPHIEALLKRKLSEQEELKKKPRR K I H L K R 1 0 1 1 0 2 1 0 2 4 2 1 0 0 2 0 2 0 0 1 0 0 20 0 2279.2638 A6NHR9;J3KTL8 A6NHR9 1674 1693 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3;4 0.0012231 36.679 4 2 0.78778 0.9785 39.514 6 Median 0.84724 0.96035 5.4738 4 0 Linear 1.2882 2.0032 15.062 2 0 Median 92033000 41493000 50541000 33716000 18577000 15139000 58317000 22916000 35402000 5531 568 5654 20037;20038;20039;20040;20041;20042 30335;30336;30337;30338;30339;30340;30341 30341 6 IHPLVR ECSIRLPKAAKTPLKIHPLVRLPLATIVKD PKAAKTPLKIHPLVRLPLATIVKDLVAQAP K I H V R L 0 1 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 1 0 0 6 0 733.45989 A0A024R534;O94776 A0A024R534 509 514 MTA2 Metastasis-associated protein MTA2 yes no 2 0.050668 70.49 1 1.0438 1.683 NaN 1 Median NaN NaN NaN 0 0 Median 1.0438 1.683 NaN 1 0 Median 38502000 18675000 19828000 0 0 0 38502000 18675000 19828000 5532 133 5655 20043 30342 30342 1 IHQALYCFDYDLEESGEIK SLETKTGADVCRLWRIHQALYCFDYDLEES LYCFDYDLEESGEIKDMLLECFININYIKK R I H I K D 1 0 0 2 1 1 3 1 1 2 2 1 0 1 0 1 0 0 2 0 0 0 19 0 2329.0573 Q86XI2;B3KRQ2;F8WE06 Q86XI2 189 207 NCAPG2 Condensin-2 complex subunit G2 yes no 3 7.1301E-05 81.878 4 0.65892 0.84728 14.913 4 Median 0.65892 0.84728 14.913 4 0 Median NaN NaN NaN 0 0 Median 23305000 11937000 11368000 23305000 11937000 11368000 0 0 0 5533 1621 5656 20044;20045;20046;20047 30343;30344;30345;30346;30347;30348;30349;30350 30348 8 IHQEGDALPGHSK KSPREHNGKVKKKKKIHQEGDALPGHSKPS KKIHQEGDALPGHSKPSRSMESSPRKGSKK K I H S K P 1 0 0 1 0 1 1 2 2 1 1 1 0 0 1 1 0 0 0 0 0 0 13 0 1387.6844 Q1ED39;H3BPL4 Q1ED39 218 230 KNOP1 Lysine-rich nucleolar protein 1 yes no 3 0.0019026 61.167 1 1.0173 1.3395 NaN 1 Median 1.0173 1.3395 NaN 1 0 Median NaN NaN NaN 0 0 Median 2955000 1510800 1444100 2955000 1510800 1444100 0 0 0 5534 1525 5657 20048 30351 30351 1 IHSDCAANQQVTYR CREGEDNSKRNPIAKIHSDCAANQQVTYRI KIHSDCAANQQVTYRISGVGIDQPPYGIFV K I H Y R I 2 1 1 1 1 2 0 0 1 1 0 0 0 0 0 1 1 0 1 1 0 0 14 0 1661.758 Q02413 Q02413 73 86 DSG1 Desmoglein-1 yes yes 2 0.050671 33.409 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 518230 518230 0 0 0 0 518230 518230 0 5535 1435 5658 20049 30352 30352 1 IHVFYIDYGNR EWYRARVEKVESPAKIHVFYIDYGNREVLP SPAKIHVFYIDYGNREVLPSTRLGTLSPAF K I H N R E 0 1 1 1 0 0 0 1 1 2 0 0 0 1 0 0 0 0 2 1 0 0 11 0 1395.6935 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B4E299 A0A140VK49 759 769 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2;3 0.00013611 88.948 4 0.41339 0.56013 10.678 2 Median 0.41339 0.56013 10.678 2 0 Median NaN NaN NaN 0 0 Median 35623000 28276000 7347000 35623000 28276000 7347000 0 0 0 5536 508 5659 20050;20051;20052;20053 30353;30354;30355;30356 30356 4 IHVPASGYCCLECGDAFALEK VPLYAPNLSPPADSRIHVPASGYCCLECGD GYCCLECGDAFALEKSLSQHYGRRSVHIEV R I H E K S 3 0 0 1 3 0 2 2 1 1 2 1 0 1 1 1 0 0 1 1 0 0 21 0 2396.0599 Q92610;H0YM74 Q92610 580 600 ZNF592 Zinc finger protein 592 yes no 3 0.002043 43.328 2 0.41168 0.52801 NaN 1 Median 0.41168 0.52801 NaN 1 0 Median NaN NaN NaN 0 0 Median 4797600 4282600 514960 4797600 4282600 514960 0 0 0 5537 1672 5660 20054;20055 30357;30358 30358 2 IHVQGTDLPDPIATFQQLDQEYK NLRKEKINFLRNKHKIHVQGTDLPDPIATF PDPIATFQQLDQEYKINSRLLQNILDAGFQ K I H Y K I 1 0 0 3 0 4 1 1 1 2 2 1 0 1 2 0 2 0 1 1 0 0 23 0 2655.318 Q9Y2R4;Q59H21 Q9Y2R4 149 171 DDX52 Probable ATP-dependent RNA helicase DDX52 yes no 3 3.3526E-32 153.58 4 1 1.1895 1.5159 14.987 4 Median 1.2064 1.5443 13.265 3 0 Median 0.86952 1.3293 NaN 1 0 Median 52394000 24864000 27530000 26417000 11007000 15410000 25977000 13857000 12120000 5538 1807 5661 20056;20057;20058;20059;20060 30359;30360;30361;30362;30363;30364;30365 30362 7 IHVSDQELQSANASVDDSRLEELK QSVQVPEFTPKSGVKIHVSDQELQSANASV SANASVDDSRLEELKATLPSPDKLPGFKMY K I H L K A 2 1 1 3 0 2 3 0 1 1 3 1 0 0 0 4 0 0 0 2 0 0 24 1 2682.3097 A0A024R1A3;P22314;Q5JRR6;B3KUJ2;B4DDE4;B4DL67 A0A024R1A3 807 830 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 3;4 5.1552E-09 57.293 5 1 0.59112 0.79136 22.579 3 Median 0.59112 0.79136 22.579 3 0 Median NaN NaN NaN 0 0 Median 34249000 19181000 15068000 25687000 19181000 6506600 8561700 0 8561700 5539 55 5662 20061;20062;20063;20064;20065;20066 30366;30367;30368;30369;30370;30371;30372 30370 7 IIAATIENAQPILQIDNAR DYSPYFKTIEDLRNKIIAATIENAQPILQI TIENAQPILQIDNARLAADDFRTKYEHELA K I I A R L 4 1 2 1 0 2 1 0 0 5 1 0 0 0 1 0 1 0 0 0 0 0 19 0 2063.1375 CON__P08779;P08779;B4DWU0;B4E2J5 CON__P08779 178 196 KRT16 Keratin, type I cytoskeletal 16 yes no 2 2.5791E-25 166.38 4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50364000 50364000 0 15286000 15286000 0 35078000 35078000 0 + 5540 958 5663 20067;20068;20069;20070;20071;20072 30373;30374;30375;30376;30377;30378 30374 6 IIANALSSEPACLAEIEEDK LAFRDQNILLGTTYRIIANALSSEPACLAE LSSEPACLAEIEEDKARRILELSGSSSEDS R I I D K A 4 0 1 1 1 0 4 0 0 3 2 1 0 0 1 2 0 0 0 0 0 0 20 0 2172.062 P78527 P78527 3336 3355 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.9192E-40 181.75 4 0.54231 0.67262 6.6115 4 Linear 0.54231 0.67262 6.6115 4 0 Linear NaN NaN NaN 0 0 Median 48899000 31868000 17031000 48899000 31868000 17031000 0 0 0 5541 1427 5664 20073;20074;20075;20076 30379;30380;30381;30382;30383;30384;30385;30386;30387 30380 9 IIAPPER QKEITALAPSTMKIKIIAPPERKYSVWIGG APSTMKIKIIAPPERKYSVWIGGSVLASLS K I I E R K 1 1 0 0 0 0 1 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 7 0 794.46504 B7Z6P1;P68133;P68032;A8K3K1;D2JYH4;P63267;P62736;B3KW67;Q7Z7J6;A6NL76;B4DUI8;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;B3KUD3;Q96DE1;Q96FU6;A4UCT3;F1BXA6;A5GZ75;B3KPP5;P63261;B4E3A4;B4DVQ0;Q562R1;V9HVZ7 Q53GK6 329 335 ACTA1;ACTC1;ACTA2;ACTG2;PS1TP5BP1;ACTB;ACTG1;ACTBL2;HEL-176 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Beta-actin-like protein 2 no no 2 0.010107 110.34 5 2 0.95961 1.3033 79.175 5 Median 0.79024 1.0938 11.146 3 0 Median 2.9591 4.8345 1.5701 2 0 Median 2787800000 1522500000 1265200000 2602000000 1476500000 1125500000 185720000 46031000 139690000 5542 1388;1420;914;1859;1547 5665 20077;20078;20079;20080;20081;20082;20083 30388;30389;30390;30391;30392;30393;30394;30395;30396 30392 9 IIAPPERK QKEITALAPSTMKIKIIAPPERKYSVWIGG PSTMKIKIIAPPERKYSVWIGGSVLASLST K I I R K Y 1 1 0 0 0 0 1 0 0 2 0 1 0 0 2 0 0 0 0 0 0 0 8 1 922.56 B7Z6P1;P68133;P68032;D2JYH4;P63267;P62736;B3KW67;Q7Z7J6;A6NL76;B4DUI8;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;B3KUD3;Q96DE1;Q96FU6;A4UCT3;F1BXA6;A5GZ75;B3KPP5;P63261;B4E3A4;B4DVQ0;Q562R1;V9HVZ7 Q53GK6 329 336 ACTA1;ACTC1;ACTA2;ACTG2;PS1TP5BP1;ACTB;ACTG1;ACTBL2;HEL-176 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Beta-actin-like protein 2 no no 2;3 0.0013997 117.16 8 4 0.84571 1.1174 80.056 12 Median 0.81047 1.0742 5.345 8 0 Median 3.0984 5.4054 5.9928 4 0 Median 8017700000 4103400000 3914300000 7508000000 3983200000 3524800000 509700000 120190000 389500000 5543 1388;1420;914;1859;1547 5666 20084;20085;20086;20087;20088;20089;20090;20091;20092;20093;20094;20095 30397;30398;30399;30400;30401;30402;30403;30404;30405;30406;30407;30408;30409;30410;30411;30412;30413;30414;30415;30416;30417 30408 21 IIATVLMTEDIK GPRRSQQGPRKEPRKIIATVLMTEDIKLNK PRKIIATVLMTEDIKLNKAEKAWKPSSKRT K I I I K L 1 0 0 1 0 0 1 0 0 3 1 1 1 0 0 0 2 0 0 1 0 0 12 0 1345.7527 E7EX73;B4DSI9;E9PGM1;E7EUU4;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637;C9JF13;C9J6B6;C9K073;C9J2Z7 E7EX73 552 563 EIF4G1;EIF4G1 variant protein Eukaryotic translation initiation factor 4 gamma 1 yes no 2 0.04802 40.589 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3198200 0 3198200 0 0 0 3198200 0 3198200 5544 747 5667 20096 30418 30418 1 IICDLVEEK AEGIAWEPVQYFNNKIICDLVEEKFKGIIS QYFNNKIICDLVEEKFKGIISILDEECLRP K I I E K F 0 0 0 1 1 0 2 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1117.5689 F5H6E2;B7Z3E5;O00159;D3DTH7;B7Z9C0 F5H6E2 454 462 MYO1C Unconventional myosin-Ic yes no 2 0.0034018 104.06 1 0.88278 1.1375 NaN 1 Median 0.88278 1.1375 NaN 1 0 Median NaN NaN NaN 0 0 Median 4344600 2299300 2045400 4344600 2299300 2045400 0 0 0 5545 905 5668 20097 30419 30419 1 IICHSYLER RLAKKTAEEPAASGRIICHSYLERLLNVEV PAASGRIICHSYLERLLNVEVPQKVGSEQK R I I E R L 0 1 0 0 1 0 1 0 1 2 1 0 0 0 0 1 0 0 1 0 0 0 9 0 1189.5914 Q9NQS7;B3KPD3 Q9NQS7 353 361 INCENP Inner centromere protein yes no 2;3 0.0012203 112.41 4 1 0.87137 1.1606 28.304 4 Median 1.2267 1.6655 24.774 3 0 Plateau 0.63663 0.88121 NaN 1 0 Median 53475000 28296000 25179000 43897000 22410000 21487000 9578100 5886000 3692200 5546 1752 5669 20098;20099;20100;20101;20102 30420;30421;30422;30423;30424;30425;30426 30422 7 IICLGDSAVGK SELDQGKYDADDNVKIICLGDSAVGKSKLM DNVKIICLGDSAVGKSKLMERFLMDGFQPQ K I I G K S 1 0 0 1 1 0 0 2 0 2 1 1 0 0 0 1 0 0 0 1 0 0 11 0 1131.5958 A0A0S2SW46;Q9UNT1;Q9UBK7;F2Z3A9;F2Z2E5;F2Z2T3;F2Z3J7;E7EWW3;B7ZBD4;B7ZBD5;A8MXF6;A0AUY0;Q6IC14 A0A0S2SW46 24 34 RABL2B;RABL2A Rab-like protein 2B;Rab-like protein 2A yes no 2 0.024286 41.029 1 0.81208 0.98731 NaN 1 Median 0.81208 0.98731 NaN 1 0 Median NaN NaN NaN 0 0 Median 21620000 12297000 9323300 21620000 12297000 9323300 0 0 0 5547 448 5670 20103 30427 30427 1 IICPIGVPETPK DVGPYGIRSEYCIRKIICPIGVPETPKETP IRKIICPIGVPETPKETPTPQRKGLRSSAL K I I P K E 0 0 0 0 1 0 1 1 0 3 0 1 0 0 3 0 1 0 0 1 0 0 12 0 1322.7268 E7ETD6;Q12830;F5GXF5;J3QQK4 E7ETD6 1828 1839 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.0022516 64.654 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4246900 4246900 0 4246900 4246900 0 0 0 0 5548 1015 5671 20104 30428 30428 1 IICQGFTGK YTASRQHLYVDKNTKIICQGFTGKQGTFHS VDKNTKIICQGFTGKQGTFHSQQALEYGTK K I I G K Q 0 0 0 0 1 1 0 2 0 2 0 1 0 1 0 0 1 0 0 0 0 0 9 0 1022.5219 Q6IAL5;B2R8A1;A8K4W7;P53597;B7Z438;H7C233 Q6IAL5 45 53 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes no 2 0.033819 71.877 1 0.26827 0.35333 NaN 1 Median 0.26827 0.35333 NaN 1 0 Median NaN NaN NaN 0 0 Median 2132100 1675000 457080 2132100 1675000 457080 0 0 0 5549 610 5672 20105 30429 30429 1 IIDAALR ______________________________ ______________________________ K I I L R A 2 1 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 7 0 770.46504 H3BRM5;H3BV69;P20674;H3BNX8 H3BRM5 7 13 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes no 2 0.030959 62.714 1 0.58764 0.7857 NaN 1 Median 0.58764 0.7857 NaN 1 0 Median NaN NaN NaN 0 0 Median 33777000 21332000 12444000 33777000 21332000 12444000 0 0 0 5550 1109 5673 20106 30430 30430 1 IIDEDGLLNLIR SGQSKSDKAAALGTKIIDEDGLLNLIRTMP GTKIIDEDGLLNLIRTMPGKKSKYEIAVET K I I I R T 0 1 1 2 0 0 1 1 0 3 3 0 0 0 0 0 0 0 0 0 0 0 12 0 1382.7769 P35251;Q14756;H0Y8U4 P35251 469 480 RFC1;LLDBP Replication factor C subunit 1 yes no 2 1.3479E-09 143.03 4 2 0.56468 0.76796 12.336 5 Median 0.56219 0.74019 2.9807 3 0 Median 0.63457 0.89226 13.915 2 0 Median 39969000 25328000 14641000 20273000 12846000 7427800 19695000 12482000 7213500 5551 1318 5674 20107;20108;20109;20110;20111;20112 30431;30432;30433;30434;30435;30436;30437;30438 30435 8 IIDEVVNK IRNPQQQESLKLATRIIDEVVNKFLDDLGN SLKLATRIIDEVVNKFLDDLGNAKSHLMSL R I I N K F 0 0 1 1 0 0 1 0 0 2 0 1 0 0 0 0 0 0 0 2 0 0 8 0 928.52295 B3KN59;B3KM36;O95816 B3KN59 116 123 BAG2 BAG family molecular chaperone regulator 2 yes no 2 0.0095821 79.451 2 2 0.97895 1.317 65.252 4 Median 0.60093 0.7471 4.2079 2 0 Median 1.5756 2.3102 3.5094 2 0 Median 58518000 32833000 25685000 43186000 26918000 16268000 15332000 5915000 9417200 5552 751 5675 20113;20114;20115;20116 30439;30440;30441;30442;30443 30441 5 IIDINYYPVPEACLSNK KLAEVTKVVVRNLNKIIDINYYPVPEACLS DINYYPVPEACLSNKRHRPIGIGVQGLADA K I I N K R 1 0 2 1 1 0 1 0 0 3 1 1 0 0 2 1 0 0 2 1 0 0 17 0 2007.9976 B4E0I8;B4DNN4;P23921;B4DS95;Q53GZ5;E9PL69;B4DXB0;B4DXD1 B4E0I8 383 399 RRM1 Ribonucleoside-diphosphate reductase;Ribonucleoside-diphosphate reductase large subunit yes no 2 0.022115 45.257 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2112700 2112700 0 2112700 2112700 0 0 0 0 5553 839 5676 20117 30444 30444 1 IIDISDVFR ATYGTDKPDTRFEMKIIDISDVFRNTEIGF TRFEMKIIDISDVFRNTEIGFLQDALSKPH K I I F R N 0 1 0 2 0 0 0 0 0 3 0 0 0 1 0 1 0 0 0 1 0 0 9 0 1076.5866 A8K4A8;A0A024R8Z9;Q6PI48;Q9NVT8;Q9H9J7 A8K4A8 341 349 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 2 0.011016 61.999 1 0.43293 0.58074 NaN 1 Median 0.43293 0.58074 NaN 1 0 Median NaN NaN NaN 0 0 Median 3202500 2388200 814300 3202500 2388200 814300 0 0 0 5554 209 5677 20118 30445;30446 30445 2 IIDKEGDDYEVIPNSNFYVSR HKDIQSCTVEVHFQKIIDKEGDDYEVIPNS DDYEVIPNSNFYVSRTACRDNTSVYHISGK K I I S R T 0 1 2 3 0 0 2 1 0 3 0 1 0 1 1 2 0 0 2 2 0 0 21 1 2472.1809 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9J578;C9JVD8 Q9NTJ3 167 187 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 1.7739E-31 153.83 3 2 0.7078 0.95632 7.0006 5 Median 0.72258 0.95632 4.4608 3 0 Median 0.54672 0.91403 11.332 2 0 Median 141820000 86565000 55252000 99430000 59705000 39725000 42387000 26860000 15527000 5555 1760 5678 20119;20120;20121;20122;20123 30447;30448;30449;30450;30451;30452;30453;30454;30455 30450 9 IIDRIHGTEEGQQILK VEAVLQLQDCSIFIKIIDRIHGTEEGQQIL IDRIHGTEEGQQILKQPVSERLDFVCSFLQ K I I L K Q 0 1 0 1 0 2 2 2 1 4 1 1 0 0 0 0 1 0 0 0 0 0 16 1 1849.0058 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;F5H0Z7;F5H763;Q86XH4;G1UI36;F5H2F3;F5H3L6;F5GZW1;F5H1L0;F8W6T3;F5GWK2;F5H073;F5H068;F5H7R5;F5H4Y4;F5GWA2;A8K394;Q4LE64;Q14980 Q4LE64 39 54 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 2.4574E-05 61.265 1 0.84983 1.0936 NaN 1 Median 0.84983 1.0936 NaN 1 0 Median NaN NaN NaN 0 0 Median 10219000 5109900 5109000 10219000 5109900 5109000 0 0 0 5556 148;1499;590 5679 20124 30456;30457 30457 2 IIDVVYNASNNELVR GNFSWGSECCTRKTRIIDVVYNASNNELVR IIDVVYNASNNELVRTKTLVKNCIVLIDST R I I V R T 1 1 3 1 0 0 1 0 0 2 1 0 0 0 0 1 0 0 1 3 0 0 15 0 1717.8999 Q5JR94;P62241;Q5JR95 Q5JR94 78 92 RPS8 40S ribosomal protein S8 yes no 2 8.2627E-46 179.6 13 4 0.87442 1.2106 95.629 9 Median 1.0032 1.3822 84.161 7 0 Median 0.30117 0.50283 4.8374 2 0 Median 2882300000 1729400000 1152900000 1862500000 950160000 912380000 1019800000 779230000 240520000 5557 1399 5680 20125;20126;20127;20128;20129;20130;20131;20132;20133;20134;20135;20136;20137;20138;20139;20140;20141 30458;30459;30460;30461;30462;30463;30464;30465;30466;30467;30468;30469;30470;30471;30472;30473;30474;30475;30476;30477;30478;30479;30480;30481;30482;30483;30484;30485;30486;30487;30488;30489;30490 30468 31 IIDYSQMDELALLSLR FNPEAFKPGNTHKCRIIDYSQMDELALLSL IDYSQMDELALLSLRTSIIEAQYLRYHDIE R I I L R T 1 1 0 2 0 1 1 0 0 2 4 0 1 0 0 2 0 0 1 0 0 0 16 0 1878.9761 Q14690;B4DH82;B4DES7 Q14690 421 436 PDCD11 Protein RRP5 homolog yes no 2 5.5491E-06 72.958 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2067400 0 2067400 2067400 0 2067400 0 0 0 5558 1494 5681 20142 30491 30491 1 IIEDLRAQIFANTVDNAR EKKGPQVRDWSHYFKIIEDLRAQIFANTVD DLRAQIFANTVDNARIVLQIDNARLAADDF K I I A R I 3 2 2 2 0 1 1 0 0 3 1 0 0 1 0 0 1 0 0 1 0 0 18 1 2058.0858 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965 F8VZY9 132 149 KRT18 Keratin, type I cytoskeletal 18 yes no 3 0.00019263 85.046 3 0.23236 0.30785 20.515 3 Median 0.23236 0.30785 20.515 3 0 Median NaN NaN NaN 0 0 Median 36027000 27933000 8094500 36027000 27933000 8094500 0 0 0 5559 252 5682 20143;20144;20145 30492;30493;30494;30495 30492 4 IIEETLALK ______________________________ LEVNNRIIEETLALKFENAAAGNKPEAVEV R I I L K F 1 0 0 0 0 0 2 0 0 2 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1028.6118 Q53R19;O15144;C9JTV5;G5E9J0;G5E9S7 Q53R19 10 18 ARPC2 Actin-related protein 2/3 complex subunit 2 yes no 2 0.021607 51.346 1 1.414 1.8365 NaN 1 Median 1.414 1.8365 NaN 1 0 Median NaN NaN NaN 0 0 Median 5688300 2843100 2845100 5688300 2843100 2845100 0 0 0 5560 1177 5683 20146 30496 30496 1 IIEGLQDLDDDVR RQDVINTLLPKVLTRIIEGLQDLDDDVRAV TRIIEGLQDLDDDVRAVAAASLVPVVESLV R I I V R A 0 1 0 4 0 1 1 1 0 2 2 0 0 0 0 0 0 0 0 1 0 0 13 0 1499.7468 Q2M1V9;A0A0A0MTH9;O14981;Q05C17 Q2M1V9 435 447 BTAF1 TATA-binding protein-associated factor 172 yes no 2 0.019571 81.525 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 720780 720780 0 720780 720780 0 0 0 0 5561 405 5684 20147 30497 30497 1 IIEGTEVVQEIQNK VAGSTSSPSVSYYRKIIEGTEVVQEIQNKQ KIIEGTEVVQEIQNKQKVGPSDDTPRRGPE K I I N K Q 0 0 1 0 0 2 3 1 0 3 0 1 0 0 0 0 1 0 0 2 0 0 14 0 1598.8516 B2RAJ6;A0JP11;Q99570 B2RAJ6 1294 1307 PIK3R4 Phosphoinositide 3-kinase regulatory subunit 4 yes no 3 0.014376 55.291 1 0.7185 0.95534 NaN 1 Median 0.7185 0.95534 NaN 1 0 Median NaN NaN NaN 0 0 Median 229530000 158100000 71431000 229530000 158100000 71431000 0 0 0 5562 528 5685 20148 30498 30498 1 IIEPIQSR SKTTRFALACNASDKIIEPIQSRCAVLRYT ACNASDKIIEPIQSRCAVLRYTKLTDAQIL K I I S R C 0 1 0 0 0 1 1 0 0 3 0 0 0 0 1 1 0 0 0 0 0 0 8 0 954.54983 Q75MT5;B5BUD2;P35250;H7C5P4;A0A087WVY3 Q75MT5 143 150 RFC2 Replication factor C subunit 2 yes no 2 0.014422 83.753 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10972000 10972000 0 10972000 10972000 0 0 0 0 5563 898 5686 20149;20150 30499;30500 30500 2 IIEVSGQK MADCPHTIGVEFGTRIIEVSGQKIKLQIWD GVEFGTRIIEVSGQKIKLQIWDTAGQERFR R I I Q K I 0 0 0 0 0 1 1 1 0 2 0 1 0 0 0 1 0 0 0 1 0 0 8 0 872.49673 A0A024R845;P61106;X6RFL8 A0A024R845 52 59 RAB14 Ras-related protein Rab-14 yes no 2 0.03881 50.127 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5564 192 5687 20151 30501 30501 1 IIEYSVYLAIQSSQAGGELK GAHLTWEPPSVTSGKIIEYSVYLAIQSSQA VYLAIQSSQAGGELKSSTPAQLAFMRVYCG K I I L K S 2 0 0 0 0 2 2 2 0 3 2 1 0 0 0 3 0 0 2 1 0 0 20 0 2168.1365 A6NEM2;P51610;H7C1C4 A6NEM2 1965 1984 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 1.0565E-05 68.513 1 0.93876 1.1833 NaN 1 Median 0.93876 1.1833 NaN 1 0 Median NaN NaN NaN 0 0 Median 2378800 1307600 1071200 2378800 1307600 1071200 0 0 0 5565 564 5688 20152 30502 30502 0 IIFVDEVFK YANVVLGDDSLNDCRIIFVDEVFKIERPGE SLNDCRIIFVDEVFKIERPGEGSPMVDNPM R I I F K I 0 0 0 1 0 0 1 0 0 2 0 1 0 2 0 0 0 0 0 2 0 0 9 0 1108.6168 A0A087WVR3;A0A087WTW0;Q96T88 A0A087WVR3 284 292 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 0.0062406 82.426 4 0.69153 0.87832 3.4871 4 Median 0.69153 0.87832 3.4871 4 0 Median NaN NaN NaN 0 0 Median 21659000 11769000 9890500 21659000 11769000 9890500 0 0 0 5566 337 5689 20153;20154;20155;20156 30503;30504;30505;30506;30507;30508;30509 30508 7 IIGATDSCGDLMFLMK NDIARGFERGLEPEKIIGATDSCGDLMFLM IGATDSCGDLMFLMKWKDTDEADLVLAKEA K I I M K W 1 0 0 2 1 0 0 2 0 2 2 1 2 1 0 1 1 0 0 0 0 0 16 0 1770.8354 V9HWG0;P45973;Q6I9T7 V9HWG0 126 141 HEL25;CBX5 Chromobox protein homolog 5 yes no 2 1.4756E-18 117.86 2 0.2698 0.43155 1.1152 2 Median NaN NaN NaN 0 0 Median 0.2698 0.43155 1.1152 2 0 Median 105800000 81308000 24491000 0 0 0 105800000 81308000 24491000 5567 1341 5690 20157;20158 30510;30511;30512 30512 563;564 3 IIGATDSSGELMFLMK ADKPRGFARGLDPERIIGATDSSGELMFLM IGATDSSGELMFLMKWKDSDEADLVLAKEA R I I M K W 1 0 0 1 0 0 1 2 0 2 2 1 2 1 0 2 1 0 0 0 0 0 16 0 1711.8525 J3KS05;Q6IBN6;P83916;B5MD17;K7ELA4;A4D177;Q13185 A4D177 126 141 CBX1;CBX3 Chromobox protein homolog 1;Chromobox protein homolog 3 no no 2 3.9812E-09 84.605 2 0.5334 0.8418 5.1518 2 Median NaN NaN NaN 0 0 Median 0.5334 0.8418 5.1518 2 0 Median 406800000 260460000 146340000 0 0 0 406800000 260460000 146340000 5568 547;1137 5691 20159;20160 30513;30514;30515;30516 30516 191;192 4 IIGAVDQIQLTQAQLEER SDQVNGVLVLSLLDKIIGAVDQIQLTQAQL AVDQIQLTQAQLEERQAEMEGAVQSIQGEL K I I E R Q 2 1 0 1 0 4 2 1 0 3 2 0 0 0 0 0 1 0 0 1 0 0 18 0 2024.0902 B4DPZ5;B4DNU9;Q6NZI2 B4DPZ5 61 78 PTRF Polymerase I and transcript release factor yes no 2 6.6209E-66 215.09 4 2 0.83485 1.1423 20.84 6 Median 0.81203 1.0898 5.3152 4 0 Median 1.0175 1.6119 9.0159 2 0 Median 200000000 107440000 92561000 129760000 73043000 56717000 70240000 34396000 35844000 5569 842 5692 20161;20162;20163;20164;20165;20166 30517;30518;30519;30520;30521;30522;30523;30524;30525;30526;30527;30528 30522 12 IIGLDQVAGMSETALPGAFK SSDKFVSELWKDVDRIIGLDQVAGMSETAL QVAGMSETALPGAFKTRKGMFRTVGQLYKE R I I F K T 3 0 0 1 0 1 1 3 0 2 2 1 1 1 1 1 1 0 0 1 0 0 20 0 2017.0554 A0A024R1N1;P35579;Q86XU5;B4E3S1;A0A0U4BW16 A0A024R1N1 618 637 MYH9 Myosin-9 no no 2 9.1823E-44 187.08 9 1 1.0447 1.3142 57.756 8 Median 1.0307 1.3009 5.8514 7 0 Median 4.0442 6.5687 NaN 1 0 Median 136260000 51349000 84910000 76018000 37797000 38221000 60242000 13553000 46689000 5570 61;490 5693;5694 20167;20168;20169;20170;20171;20172;20173;20174;20175;20176 30529;30530;30531;30532;30533;30534;30535;30536;30537;30538;30539;30540;30541;30542;30543;30544;30545 30539 21 17 IIHDFPQFYPLGIVQHD DSHPFDLGLYNEAVKIIHDFPQFYPLGIVQ HDFPQFYPLGIVQHD_______________ K I I H D - 0 0 0 2 0 2 0 1 2 3 1 0 0 2 2 0 0 0 1 1 0 0 17 0 2038.0312 B5MC59;A4D105;P35244 B5MC59 66 82 RPA3 Replication protein A 14 kDa subunit yes no 3 0.0078679 63.614 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23867000 0 0 23867000 0 0 0 0 0 5571 546 5695 20177;20178 30546;30547 30547 2 IIIEDLLEATR CQAVILSVEDDTGHRIIIEDLLEATRSPEV TGHRIIIEDLLEATRSPEVGMRQAAAIILN R I I T R S 1 1 0 1 0 0 2 0 0 3 2 0 0 0 0 0 1 0 0 0 0 0 11 0 1284.7289 E1NZA1;A0A024RBS1 E1NZA1 2151 2161 PRIC295;GCN1L1 yes no 2 1.6433E-05 98.943 3 0.37042 0.523 14.856 3 Median 0.37042 0.523 14.856 3 0 Median NaN NaN NaN 0 0 Median 14429000 10330000 4099600 14429000 10330000 4099600 0 0 0 5572 1000 5696 20179;20180;20181 30548;30549;30550;30551;30552 30552 5 IIIEELSLVAASPTLSPR EQRLNEVPKNHPKSRIIIEELSLVAASPTL EELSLVAASPTLSPRQSMISTQNQYSTLSK R I I P R Q 2 1 0 0 0 0 2 0 0 3 3 0 0 0 2 3 1 0 0 1 0 0 18 0 1908.0932 Q16513;B1AL79;Q9UHS4;H0Y5V5 Q16513 291 308 PKN2 Serine/threonine-protein kinase N2 yes no 2 1.408E-11 143.25 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4537700 4537700 0 4537700 4537700 0 0 0 0 5573 1519 5697 20182;20183;20184 30553;30554;30555 30553 3 IIIENKPK LNNQARFILEKIDGKIIIENKPKKELIKVL LEKIDGKIIIENKPKKELIKVLIQRGYDSD K I I P K K 0 0 1 0 0 0 1 0 0 3 0 2 0 0 1 0 0 0 0 0 0 0 8 1 953.59097 P11388 P11388 1063 1070 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 0.00039358 133.81 8 4 0.89298 1.1723 9.5864 12 Median 0.91437 1.1156 11.332 8 0 Median 0.75698 1.2266 2.7764 4 0 Median 2572100000 1337500000 1234600000 2157200000 1108200000 1049000000 414860000 229290000 185570000 5574 1256 5698 20185;20186;20187;20188;20189;20190;20191;20192;20193;20194;20195;20196 30556;30557;30558;30559;30560;30561;30562;30563;30564;30565;30566;30567;30568;30569;30570;30571;30572;30573;30574;30575;30576;30577 30556 22 IIIPEIQK FDGIQPKMFGMVLEKIIIPEIQKVSGNVEK FGMVLEKIIIPEIQKVSGNVEKKICAVGIT K I I Q K V 0 0 0 0 0 1 1 0 0 4 0 1 0 0 1 0 0 0 0 0 0 0 8 0 952.59572 B4DS32;B4DPS6;B4DUC5;P55060;B4DM31 B4DS32 423 430 CSE1L Exportin-2 yes no 2 0.0078201 97.068 27 59 0.58882 0.89077 10.11 59 Median 0.74298 0.93192 5.3352 21 0 Median 0.56877 0.89808 9.7668 38 0 Plateau 11276000000 10217000000 1058700000 844420000 490820000 353600000 10431000000 9726100000 705110000 5575 846 5699 20197;20198;20199;20200;20201;20202;20203;20204;20205;20206;20207;20208;20209;20210;20211;20212;20213;20214;20215;20216;20217;20218;20219;20220;20221;20222;20223;20224;20225;20226;20227;20228;20229;20230;20231;20232;20233;20234;20235;20236;20237;20238;20239;20240;20241;20242;20243;20244;20245;20246;20247;20248;20249;20250;20251;20252;20253;20254;20255;20256;20257;20258;20259;20260;20261;20262;20263;20264;20265;20266;20267;20268;20269;20270;20271;20272;20273;20274;20275;20276;20277;20278;20279;20280;20281;20282 30578;30579;30580;30581;30582;30583;30584;30585;30586;30587;30588;30589;30590;30591;30592;30593;30594;30595;30596;30597;30598;30599;30600;30601;30602;30603;30604;30605;30606;30607;30608;30609;30610;30611;30612;30613;30614;30615;30616;30617;30618;30619;30620;30621;30622;30623;30624;30625;30626;30627;30628;30629;30630;30631;30632;30633;30634;30635;30636;30637;30638;30639;30640;30641;30642;30643;30644;30645;30646;30647;30648;30649;30650;30651;30652;30653;30654;30655;30656;30657;30658;30659;30660;30661;30662;30663;30664;30665;30666;30667;30668;30669;30670;30671;30672;30673;30674;30675;30676;30677;30678;30679;30680;30681;30682;30683;30684;30685;30686;30687;30688;30689 30587 112 IIITVVEEQEQK RQFRTGRITVEKIIKIIITVVEEQEQKGRL IIKIIITVVEEQEQKGRLCFEGLRSLVPAA K I I Q K G 0 0 0 0 0 2 3 0 0 3 0 1 0 0 0 0 1 0 0 2 0 0 12 0 1427.7872 Q15149;D3DWL0 Q15149 3095 3106 PLEC;PLEC1 Plectin yes no 2 4.3471E-20 190.88 2 0.65488 0.82798 NaN 1 Median 0.65488 0.82798 NaN 1 0 Median NaN NaN NaN 0 0 Median 29547000 7804100 21743000 29547000 7804100 21743000 0 0 0 5576 1507 5700 20283;20284 30690;30691 30690 2 IIKPVLTQESATYIAEEYSR MVSAAFMKKYIHVAKIIKPVLTQESATYIA LTQESATYIAEEYSRLRSQDSMSSDTARTS K I I S R L 2 1 0 0 0 1 3 0 0 3 1 1 0 0 1 2 2 0 2 1 0 0 20 1 2310.2107 Q8NHX6;Q53HJ4;B2R7C5;A0A0S2Z4T1;A0A0S2Z492;P25205;B4DUQ9;J3KQ69;B4DS46;Q7Z6P5 Q8NHX6 577 596 HCC5;MCM3 DNA helicase;DNA replication licensing factor MCM3 yes no 3 1.4825E-05 85.177 2 0.33689 0.44937 15.069 2 Median 0.33689 0.44937 15.069 2 0 Median NaN NaN NaN 0 0 Median 16843000 12017000 4826700 16843000 12017000 4826700 0 0 0 5577 463 5701 20285;20286 30692;30693 30692 1 IILDEAHNVK VEGTSTPLLRIAWARIILDEAHNVKNPRVQ IAWARIILDEAHNVKNPRVQTSIAVCKLQA R I I V K N 1 0 1 1 0 0 1 0 1 2 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1150.6346 A0A024R0F1;Q9UNY4;Q59EG6 A0A024R0F1 734 743 TTF2 Transcription termination factor 2 yes no 3 0.0036277 81.525 2 1.0069 1.2782 0.19876 2 Median 1.0069 1.2782 0.19876 2 0 Median NaN NaN NaN 0 0 Median 21292000 10418000 10874000 21292000 10418000 10874000 0 0 0 5578 33 5702 20287;20288 30694;30695;30696;30697 30695 4 IILDLISESPIK VLIGGKPDRVVECIKIILDLISESPIKGRA CIKIILDLISESPIKGRAQPYDPNFYDETY K I I I K G 0 0 0 1 0 0 1 0 0 4 2 1 0 0 1 2 0 0 0 0 0 0 12 0 1339.7963 A0A024R228;P61978;B4DUQ1;Q5EC54;Q5T6W2;B4DFF1 A0A024R228 208 219 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 2 5.9398E-32 209.73 5 2 0.35567 0.44551 117.55 6 Median 0.3468 0.43434 15.687 4 0 Median 2.599 3.9268 0.44137 2 0 Median 150160000 99379000 50779000 118790000 90131000 28660000 31367000 9248100 22119000 5579 77 5703 20289;20290;20291;20292;20293;20294;20295 30698;30699;30700;30701;30702;30703;30704;30705;30706;30707;30708;30709 30698 12 IILLAEGR IKPQVDRYRLKNGRRIILLAEGRLVNLGCA RLKNGRRIILLAEGRLVNLGCAMGHPSFVM R I I G R L 1 1 0 0 0 0 1 1 0 2 2 0 0 0 0 0 0 0 0 0 0 0 8 0 883.5491 Q1RMG2;P23526 Q1RMG2 210 217 AHCY Adenosylhomocysteinase yes no 2 0.0069459 81.784 2 0.50873 0.687 19.971 2 Median 0.50873 0.687 19.971 2 0 Median NaN NaN NaN 0 0 Median 24291000 15636000 8654600 24291000 15636000 8654600 0 0 0 5580 1294 5704 20296;20297 30710;30711 30711 2 IILPPEK FMPVMFSLTWDMACRIILPPEKELAMPGED LTWDMACRIILPPEKELAMPGEDLKFNLIL R I I E K E 0 0 0 0 0 0 1 0 0 2 1 1 0 0 2 0 0 0 0 0 0 0 7 0 808.50584 P49411 P49411 389 395 TUFM Elongation factor Tu, mitochondrial yes yes 2 0.041287 53.554 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3542700 0 3542700 0 0 0 3542700 0 3542700 5581 1350 5705 20298 30712 30712 1 IILSDEGK FQEALAIYPPCGRRKIILSDEGKMYGRNEL PPCGRRKIILSDEGKMYGRNELIARYIKLR K I I G K M 0 0 0 1 0 0 1 1 0 2 1 1 0 0 0 1 0 0 0 0 0 0 8 0 873.48075 H0YE88;P28347;H0YGS2;H0YEJ9;A0A0A0MRF3;Q96G15;Q53GI4;Q71U35;A0A024QZE2;A0A024QZD8;Q15561;Q99594;Q15562;H0Y7B0;H0YCZ6 H0YE88 58 65 TEAD1;TEAD4;TEAD3;TEAD2 Transcriptional enhancer factor TEF-1;Transcriptional enhancer factor TEF-3;Transcriptional enhancer factor TEF-5;Transcriptional enhancer factor TEF-4 yes no 2 0.019227 58.815 1 1 0.66148 0.89544 0.41114 2 Median 0.71779 0.89284 NaN 1 0 Median 0.60959 0.89804 NaN 1 0 Median 24238000 14002000 10236000 16650000 9382700 7267800 7587600 4619200 2968400 5582 1099 5706 20299;20300 30713;30714 30714 2 IINADSEDPK TLQSEQPLQVARCTKIINADSEDPKYIINV ARCTKIINADSEDPKYIINVKQFAKFVVDL K I I P K Y 1 0 1 2 0 0 1 0 0 2 0 1 0 0 1 1 0 0 0 0 0 0 10 0 1100.535 A0A140VK70;P35998;Q75L23;C9JLS9;B7Z571 A0A140VK70 101 110 PSMC2 26S protease regulatory subunit 7 yes no 2 0.0017123 75.378 1 0.35422 0.43354 NaN 1 Median 0.35422 0.43354 NaN 1 0 Median NaN NaN NaN 0 0 Median 3760200 2742000 1018200 3760200 2742000 1018200 0 0 0 5583 510 5707 20301 30715;30716 30715 2 IINDLLQSLR AHIMGPPDRCEHAARIINDLLQSLRSGPPG EHAARIINDLLQSLRSGPPGPPGGPGMPPG R I I L R S 0 1 1 1 0 1 0 0 0 2 3 0 0 0 0 1 0 0 0 0 0 0 10 0 1183.6925 A0A087WTP3;Q92945 A0A087WTP3 385 394 KHSRP Far upstream element-binding protein 2 yes no 2 0.00044965 90.15 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9185100 6087900 3097200 6087900 6087900 0 3097200 0 3097200 5584 335 5708 20302;20303;20304 30717;30718;30719;30720 30717 4 IINDNATYCR RVREWYGYHFPELVKIINDNATYCRLAQFI PELVKIINDNATYCRLAQFIGNRRELNEDK K I I C R L 1 1 2 1 1 0 0 0 0 2 0 0 0 0 0 0 1 0 1 0 0 0 10 0 1238.5714 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 203 212 NOP56 Nucleolar protein 56 yes no 2 1.691E-29 200.54 2 1 0.61737 0.91232 26.846 2 Median 0.81018 1.103 NaN 1 0 Median 0.47044 0.75458 NaN 1 0 Median 210550000 158180000 52374000 143990000 112870000 31119000 66559000 45303000 21255000 5585 647 5709 20305;20306;20307 30721;30722;30723;30724;30725;30726 30723 6 IINEPTAAAIAYGLDK ATKDAGTIAGLNVLRIINEPTAAAIAYGLD INEPTAAAIAYGLDKKVGAERNVLIFDLGG R I I D K K 4 0 1 1 0 0 1 1 0 3 1 1 0 0 1 0 1 0 1 0 0 0 16 0 1658.8879 V9HW22;P11142;E9PKE3;Q96IS6;B3KTV0;Q53HF2;E9PN89;B4E1Q1;B4DTX2;E9PLF4;E9PI65;B4DXY3;Q53FA3;B4DI54;P34931;B2RCQ9;V9HWB4;P11021;B4DEF7 V9HW22 172 187 HEL-S-72p;HSPA8;HSPA1L;HEL-S-89n;HSPA5 Heat shock cognate 71 kDa protein;Heat shock 70 kDa protein 1-like;78 kDa glucose-regulated protein no no 2 2.8748E-18 159.66 3 2 0.61427 0.80408 59.231 5 Median 0.61427 0.80408 5.9752 3 0 Plateau 1.4067 2.2237 4.2089 2 0 Median 605520000 320300000 285220000 298660000 187880000 110780000 306860000 132420000 174440000 5586 1253;1252;810 5710 20308;20309;20310;20311;20312 30727;30728;30729;30730;30731;30732;30733;30734;30735;30736 30729 10 IINEPTAAAIAYGLDKK ATKDAGTIAGLNVLRIINEPTAAAIAYGLD NEPTAAAIAYGLDKKVGAERNVLIFDLGGG R I I K K V 4 0 1 1 0 0 1 1 0 3 1 2 0 0 1 0 1 0 1 0 0 0 17 1 1786.9829 V9HW22;P11142;E9PKE3;Q96IS6;B3KTV0;Q53HF2;E9PN89;B4E1Q1;B4DTX2;E9PI65 V9HW22 172 188 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein no no 3 0.0028677 54.355 3 3 0.89458 1.0953 28.038 3 Plateau 0.89458 1.0953 28.038 3 0 Plateau NaN NaN NaN 0 0 Median 40658000 18374000 22284000 28687000 15412000 13276000 11971000 2962700 9007900 5587 1253 5711 20313;20314;20315;20316;20317;20318 30737;30738;30739;30740;30741;30742 30740 6 IINEPTAAAIAYGLDKR ATKDAGTIAGLNVMRIINEPTAAAIAYGLD NEPTAAAIAYGLDKREGEKNILVFDLGGGT R I I K R E 4 1 1 1 0 0 1 1 0 3 1 1 0 0 1 0 1 0 1 0 0 0 17 1 1814.989 V9HWB4;P11021;B4DEF7 V9HWB4 198 214 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 3 0.0034932 29.099 1 0.50154 0.63656 NaN 1 Median 0.50154 0.63656 NaN 1 0 Median NaN NaN NaN 0 0 Median 4499900 2803000 1696900 4499900 2803000 1696900 0 0 0 5588 1252 5712 20319 30743 30743 1 IINEPTAAAIAYGLDR ATKDAGVIAGLNVLRIINEPTAAAIAYGLD INEPTAAAIAYGLDRTGKGERNVLIFDLGG R I I D R T 4 1 1 1 0 0 1 1 0 3 1 0 0 0 1 0 1 0 1 0 0 0 16 0 1686.8941 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DI39;B4DWK5;B4DNT8;B4DFN9;B4DVU9;B4E1S9;Q9UQC1;Q53FC7;B3KSM6;B2R6X5;P17066;B4DHP5 A8K5I0 172 187 HEL-S-103;HSPA1B;HSPA1A;HSP70-1;HSPA6 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6 no no 2 1.5534E-24 158.86 6 2 0.82758 1.1414 53.031 5 Median 0.71217 0.97835 13.979 3 0 Median 1.5618 2.5554 4.5592 2 0 Median 455130000 244760000 210370000 243700000 159880000 83818000 211430000 84879000 126550000 5589 439;701 5713 20320;20321;20322;20323;20324;20325;20326;20327 30744;30745;30746;30747;30748;30749;30750;30751;30752;30753;30754;30755;30756;30757 30753 14 IINYANSSDPTSGVSK IGESTVRDIKKNKERIINYANSSDPTSGVS INYANSSDPTSGVSKRKSMKSSTYEELDRV R I I S K R 1 0 2 1 0 0 0 1 0 2 0 1 0 0 1 4 1 0 1 1 0 0 16 0 1651.8053 V9HWD1;B3KNK0;Q4W5G0 V9HWD1 52 67 HEL106;TIGD2 Tigger transposable element-derived protein 2 yes no 2 0.000756 62.042 1 1 0.25203 0.34696 NaN 1 Median NaN NaN NaN 0 0 Median 0.25203 0.34696 NaN 1 0 Median 7209100 6118600 1090500 3142400 3142400 0 4066700 2976200 1090500 5590 759 5714 20328;20329 30758;30759;30760 30759 3 IIPLYSTLPPQQQQR KREVDDLGPEVGDIKIIPLYSTLPPQQQQR IIPLYSTLPPQQQQRIFEPPPPKKQNGAIG K I I Q R I 0 1 0 0 0 4 0 0 0 2 2 0 0 0 3 1 1 0 1 0 0 0 15 0 1780.9836 O43143;B4E0S6 O43143 385 399 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 2.2894E-06 121.36 4 1 0.60336 0.81079 21.107 5 Median 0.58959 0.80139 7.1768 4 0 Median 0.82237 1.2388 NaN 1 0 Median 53492000 31483000 22009000 37040000 21254000 15786000 16452000 10228000 6223200 5591 1180 5715 20330;20331;20332;20333;20334 30761;30762;30763;30764;30765;30766;30767;30768;30769;30770 30762 10 IIPQCIAR PNSHVYYRRGLALKKIIPQCIARDFTDLIV RGLALKKIIPQCIARDFTDLIVINEDRKTP K I I A R D 1 1 0 0 1 1 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 0 8 0 969.54297 Q9H9Y2 Q9H9Y2 183 190 RPF1 Ribosome production factor 1 yes yes 2 0.04642 43.066 1 0.8802 1.1879 NaN 1 Median 0.8802 1.1879 NaN 1 0 Median NaN NaN NaN 0 0 Median 31463000 17289000 14173000 31463000 17289000 14173000 0 0 0 5592 1747 5716 20335 30771 30771 1 IIQAAINSDGGQPEIK GNYTSVLEFSDDIVKIIQAAINSDGGQPEI IQAAINSDGGQPEIKKANSMVKSFFIRQME K I I I K K 2 0 1 1 0 2 1 2 0 4 0 1 0 0 1 1 0 0 0 0 0 0 16 0 1652.8733 Q03164 Q03164 1733 1748 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 4.3337E-13 132.03 4 2 0.99601 1.278 8.0122 6 Median 1.0145 1.2768 0.83226 4 0 Linear 0.98283 1.4785 4.1885 2 0 Median 42127000 22710000 19418000 18606000 9753000 8853400 23521000 12957000 10564000 5593 1438 5717 20336;20337;20338;20339;20340;20341 30772;30773;30774;30775;30776;30777;30778;30779;30780;30781 30778 10 IIQEVEENPDLR MGPKRRQLTFREKSRIIQEVEENPDLRKGE KSRIIQEVEENPDLRKGEIARRFNIPPSTL R I I L R K 0 1 1 1 0 1 3 0 0 2 1 0 0 0 1 0 0 0 0 1 0 0 12 0 1453.7413 P07199;Q71VN4 P07199 16 27 CENPB Major centromere autoantigen B yes no 2 7.4803E-17 178.54 4 2 0.79 1.161 7.1929 5 Median 0.84249 1.1226 6.9924 3 0 Median 0.77158 1.2059 1.7853 2 0 Median 93144000 47311000 45833000 41190000 18398000 22792000 51954000 28913000 23041000 5594 1239 5718 20342;20343;20344;20345;20346;20347 30782;30783;30784;30785;30786;30787;30788;30789;30790;30791;30792 30785 11 IIQEVEENPDLRK MGPKRRQLTFREKSRIIQEVEENPDLRKGE SRIIQEVEENPDLRKGEIARRFNIPPSTLS R I I R K G 0 1 1 1 0 1 3 0 0 2 1 1 0 0 1 0 0 0 0 1 0 0 13 1 1581.8362 P07199;Q71VN4 P07199 16 28 CENPB Major centromere autoantigen B yes no 3 0.0017663 76.357 2 2 0.84744 1.1022 12.109 3 Median 0.92552 1.2231 14.726 2 0 Median 0.70631 1.099 NaN 1 0 Median 30700000 13664000 17037000 18276000 8829300 9446300 12425000 4834400 7590400 5595 1239 5719 20348;20349;20350;20351 30793;30794;30795;30796;30797 30793 5 IIQLAVINFLAK KTDLKRHQEREKAARIIQLAVINFLAKQRL AARIIQLAVINFLAKQRLRKRVNAALVIQK R I I A K Q 2 0 1 0 0 1 0 0 0 3 2 1 0 1 0 0 0 0 0 1 0 0 12 0 1341.8384 Q8IZT6;Q5VYL4;B3KM85 Q8IZT6 1298 1309 ASPM Abnormal spindle-like microcephaly-associated protein yes no 2 7.3031E-08 113.71 4 0.82438 1.085 2.8745 3 Median 0.82438 1.085 2.8745 3 0 Median NaN NaN NaN 0 0 Median 14978000 6688200 8290100 14978000 6688200 8290100 0 0 0 5596 1631 5720 20352;20353;20354;20355 30798;30799;30800;30801;30802;30803 30802 6 IIQLLDDYPK PREDRATWKSNYFLKIIQLLDDYPKCFIVG NYFLKIIQLLDDYPKCFIVGADNVGSKQMQ K I I P K C 0 0 0 2 0 1 0 0 0 2 2 1 0 0 1 0 0 0 1 0 0 0 10 0 1216.6703 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VWS0;Q53HK9;F8VU65;F8VZS0;Q6NSF2;B4E3D5;G3V210;Q8NHW5;F8VQY6;F8VRK7;F8VS58 Q53HW2 17 26 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 7.1451E-06 113.22 3 2 0.7848 1.0196 4.8019 5 Median 0.80174 0.99201 6.5531 3 0 Median 0.64592 1.0345 2.0504 2 0 Median 251110000 142960000 108150000 143410000 79153000 64259000 107700000 63808000 43895000 5597 281 5721 20356;20357;20358;20359;20360 30804;30805;30806;30807;30808 30806 4 IIQQGLIR APRASVPSVQIQGQRIIQQGLIRVANVPNT VQIQGQRIIQQGLIRVANVPNTSLLVNIPQ R I I I R V 0 1 0 0 0 2 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 0 8 0 939.58655 A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7 A0A024R7K7 286 293 GATAD2A Transcriptional repressor p66-alpha yes no 2 0.013353 67.344 2 1.5971 2.2804 8.0635 2 Median NaN NaN NaN 0 0 Median 1.5971 2.2804 8.0635 2 0 Median 23732000 10248000 13485000 0 0 0 23732000 10248000 13485000 5598 179 5722 20361;20362 30809;30810 30810 2 IIQQVLQGLDYLHTK IKSNYQGLPLPCVKKIIQQVLQGLDYLHTK IIQQVLQGLDYLHTKCRIIHTDIKPENILL K I I T K C 0 0 0 1 0 3 0 1 1 2 3 1 0 0 0 0 1 0 1 1 0 0 15 0 1767.9883 Q96SB4;A0A024RCU9;A8K8B2;H3BLV9 Q96SB4 192 206 SRPK1 SRSF protein kinase 1 yes no 3 6.4475E-08 131.96 2 0.68091 0.84937 15.055 2 Median 0.68091 0.84937 15.055 2 0 Median NaN NaN NaN 0 0 Median 37568000 22387000 15182000 37568000 22387000 15182000 0 0 0 5599 1699 5723 20363;20364 30811;30812 30811 2 IIRPSETAGR PVARYFGIKRGQVVKIIRPSETAGRYITYR GQVVKIIRPSETAGRYITYRLVHP______ K I I G R Y 1 2 0 0 0 0 1 1 0 2 0 0 0 0 1 1 1 0 0 0 0 0 10 1 1098.6146 A0A087WVZ9;E5KT65;P19388;B4DJ89;A0A087WWX0 A0A087WVZ9 166 175 POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1 yes no 3 0.014284 39.293 1 0.49817 0.65011 NaN 1 Median 0.49817 0.65011 NaN 1 0 Median NaN NaN NaN 0 0 Median 9073800 5298800 3775000 9073800 5298800 3775000 0 0 0 5600 352 5724 20365 30813 30813 1 IISAASEGGANVFTVSYFK ETLINKGFVEIQTPKIISAASEGGANVFTV ASEGGANVFTVSYFKNNAYLAQSPQLYKQM K I I F K N 3 0 1 0 0 0 1 2 0 2 0 1 0 2 0 3 1 0 1 2 0 0 19 0 1959.9942 D3DP78;A0A140VJW5;P14868;Q53T60 D3DP78 190 208 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 4.4162E-24 184 5 0.44654 0.56682 4.7163 3 Median 0.44654 0.56682 4.7163 3 0 Median NaN NaN NaN 0 0 Median 26003000 18557000 7446700 26003000 18557000 7446700 0 0 0 5601 504 5725 20366;20367;20368;20369;20370 30814;30815;30816;30817;30818;30819;30820;30821 30814 8 IISDNLTYCK RCREWYGWHFPELGKIISDNLTYCKCLQKV PELGKIISDNLTYCKCLQKVGDRKNYASAK K I I C K C 0 0 1 1 1 0 0 0 0 2 1 1 0 0 0 1 1 0 1 0 0 0 10 0 1225.6013 Q9Y2X3;B3KN82;H7BZ72 Q9Y2X3 197 206 NOP58 Nucleolar protein 58 yes no 2 8.9557E-06 120.87 4 2 0.66344 0.85271 20.163 6 Median 0.74209 0.94843 11.687 4 0 Median 0.41325 0.65512 0.59836 2 0 Median 305820000 176670000 129150000 234800000 127320000 107480000 71019000 49348000 21671000 5602 1810 5726 20371;20372;20373;20374;20375;20376 30822;30823;30824;30825;30826;30827;30828;30829;30830;30831;30832 30828 11 IISLETYNLLR YVRRRLTAEDLFEARIISLETYNLLREGTR FEARIISLETYNLLREGTRSLREALEAESA R I I L R E 0 1 1 0 0 0 1 0 0 2 3 0 0 0 0 1 1 0 1 0 0 0 11 0 1333.7606 Q15149;D3DWL0;Q96IE3 Q15149 3794 3804 PLEC;PLEC1 Plectin yes no 2 1.3658E-10 175.91 4 1 0.64872 0.88071 65.75 5 Median 0.6364 0.864 3.9876 4 0 Median 2.4334 3.767 NaN 1 0 Median 195580000 109650000 85929000 169300000 103530000 65770000 26274000 6115500 20159000 5603 1507 5727 20377;20378;20379;20380;20381 30833;30834;30835;30836;30837;30838;30839;30840;30841;30842;30843 30834 11 IISNASCTTNCLAPLAK FVMGVNHEKYDNSLKIISNASCTTNCLAPL SNASCTTNCLAPLAKVIHDNFGIVEGLMTT K I I A K V 3 0 2 0 2 0 0 0 0 2 2 1 0 0 1 2 2 0 0 0 0 0 17 0 1832.9125 V9HVZ4;P04406;Q2TSD0;E7EUT5;Q0QET7;A4UCT1;B4DRV9 V9HVZ4 146 162 HEL-S-162eP;GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 2 2.2766E-43 203.74 4 0.64364 0.86938 4.9598 4 Linear 0.64364 0.86938 4.9598 4 0 Linear NaN NaN NaN 0 0 Median 218740000 137460000 81278000 218740000 137460000 81278000 0 0 0 5604 1231 5728 20382;20383;20384;20385 30844;30845;30846;30847;30848;30849;30850;30851;30852;30853 30847 10 IISNVPADSLIR FLPHKYDVKLQNEDKIISNVPADSLIRTER EDKIISNVPADSLIRTERPPNKEIVRYFIR K I I I R T 1 1 1 1 0 0 0 0 0 3 1 0 0 0 1 2 0 0 0 1 0 0 12 0 1296.7402 Q9UIG0 Q9UIG0 232 243 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 9.9151E-18 157.24 2 2 40.498 55.021 NaN 1 Median 40.498 55.021 NaN 1 0 Median NaN NaN NaN 0 0 Median 126640000 792820 125850000 58383000 792820 57591000 68258000 0 68258000 5605 1786 5729 20386;20387;20388;20389 30854;30855;30856;30857 30855 4 IISSDRDLLAVVFYGTEK FDMSIQCIQSVYISKIISSDRDLLAVVFYG SDRDLLAVVFYGTEKDKNSVNFKNIYVLQE K I I E K D 1 1 0 2 0 0 1 1 0 2 2 1 0 1 0 2 1 0 1 2 0 0 18 1 2025.0783 A0A024R1N4;P12956;B1AHC9;B2RDN9 A0A024R1N4 75 92 XRCC6 X-ray repair cross-complementing protein 6 yes no 2;3 9.9696E-31 122.44 5 2 0.53767 0.71655 7.8804 7 Median 0.54187 0.71655 3.4762 5 0 Median 0.45347 0.78095 14.707 2 0 Median 598500000 388980000 209530000 501590000 325300000 176290000 96915000 63677000 33238000 5606 62 5730 20390;20391;20392;20393;20394;20395;20396 30858;30859;30860;30861;30862;30863;30864;30865;30866;30867 30862 10 IISSLSSAFHVFEDGNK FQKNVRSSGAWGVNKIISSLSSAFHVFEDG SSLSSAFHVFEDGNKENYGLPQPKNKPTGA K I I N K E 1 0 1 1 0 0 1 1 1 2 1 1 0 2 0 4 0 0 0 1 0 0 17 0 1849.921 B4DYG2;O43683;A0JLU2;A8K5A6 B4DYG2 499 515 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 yes no 3 0.037697 39.753 1 0.72966 0.92997 NaN 1 Median 0.72966 0.92997 NaN 1 0 Median NaN NaN NaN 0 0 Median 6352400 3404200 2948200 6352400 3404200 2948200 0 0 0 5607 873 5731 20397 30868 30868 1 IISVFVDALPHVPEHR DSIEVSRNVEEIVVKIISVFVDALPHVPEH ISVFVDALPHVPEHRRLPILVQLVDTLGAE K I I H R R 1 1 0 1 0 0 1 0 2 2 1 0 0 1 2 1 0 0 0 3 0 0 16 0 1827.9996 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8;Q8N7L7 B2RWN5 1379 1394 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3;4 0.026075 44.807 3 0.87405 1.1741 3.4558 3 Median 0.87405 1.1741 3.4558 3 0 Median NaN NaN NaN 0 0 Median 49034000 24375000 24659000 49034000 24375000 24659000 0 0 0 5608 748 5732 20398;20399;20400 30869;30870;30871 30871 3 IITDVIGNPEEERR DFIQEWLRSQRRDLKIITDVIGNPEEERRA KIITDVIGNPEEERRAAFYHQPWAQEAVGR K I I R R A 0 2 1 1 0 0 3 1 0 3 0 0 0 0 1 0 1 0 0 1 0 0 14 1 1639.8529 J3KMX2;B9EGA3;Q92925;J3QWB6 J3KMX2 406 419 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes no 3 0.020532 24.558 1 2 1.3741 1.8238 56.971 3 Median 0.52639 0.68511 NaN 1 0 Median 1.3889 1.8377 1.0752 2 0 Median 15891000 7598400 8292200 8485900 4995700 3490200 7404600 2602600 4802000 5609 927 5733 20401;20402;20403 30872;30873;30874;30875;30876 30874 5 IITFTK DVLHQIFSKFGTVLKIITFTKNNQFQALLQ FSKFGTVLKIITFTKNNQFQALLQYADPVS K I I T K N 0 0 0 0 0 0 0 0 0 2 0 1 0 1 0 0 2 0 0 0 0 0 6 0 721.43743 A6NLN1;A0A0U1RRM4;P26599;K7EK45;Q59H49;A0A087WU68;K7EKJ7;B4DI28;B4DSU5;B4DSS8;Q9UKA9;A0A024R163;O95758 A6NLN1 183 188 PTBP1;PTBP2;ROD1;PTBP3 Polypyrimidine tract-binding protein 1;Polypyrimidine tract-binding protein 2;Polypyrimidine tract-binding protein 3 no no 2 0.0020542 138.53 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9776500 9776500 0 9776500 9776500 0 0 0 0 5610 489;52 5734 20404;20405 30877;30878 30877 2 IITHPNFNGNTLDNDIMLIK IDVLEGNEQFINAAKIITHPNFNGNTLDND NFNGNTLDNDIMLIKLSSPATLNSRVATVS K I I I K L 0 0 4 2 0 0 0 1 1 4 2 1 1 1 1 0 2 0 0 0 0 0 20 0 2282.1729 CON__P00761 CON__P00761 78 97 yes yes 3 9.796E-09 135.04 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30302000 30302000 0 20212000 20212000 0 10090000 10090000 0 + 5611 947 5735;5736 20406;20407;20408 30879;30880;30881 30879 322 3 IITLAGPTNAIFK SGARINISEGNCPERIITLAGPTNAIFKAF ERIITLAGPTNAIFKAFAMIIDKLEEDISS R I I F K A 2 0 1 0 0 0 0 1 0 3 1 1 0 1 1 0 2 0 0 0 0 0 13 0 1357.7969 Q15366;B4DLC0;F8W0G4;F8VXH9;F8W1G6;H3BRU6;F8VZX2;B4DRD7 Q15366 58 70 PCBP2 Poly(rC)-binding protein 2 no no 2 2.4555E-12 160.77 4 2 0.34406 0.44189 137.43 6 Median 0.33084 0.42655 6.0806 4 0 Median 3.7883 6.042 1.4167 2 0 Median 362140000 230310000 131830000 275430000 209580000 65848000 86710000 20731000 65978000 5612 1510;1064 5737 20409;20410;20411;20412;20413;20414 30882;30883;30884;30885;30886;30887;30888;30889 30883 8 IITLTGPTNAIFK SGARINISEGNCPERIITLTGPTNAIFKAF ERIITLTGPTNAIFKAFAMIIDKLEEDINS R I I F K A 1 0 1 0 0 0 0 1 0 3 1 1 0 1 1 0 3 0 0 0 0 0 13 0 1387.8075 Q53SS8;Q15365 Q53SS8 58 70 PCBP1 Poly(rC)-binding protein 1 yes no 2 5.3596E-11 143.96 3 2 0.92666 1.3097 156.46 4 Median 0.27676 0.35338 1.5323 2 0 Median 3.438 5.2923 13.762 2 0 Median 187800000 125900000 61905000 137410000 113910000 23505000 50391000 11992000 38400000 5613 1509 5738 20415;20416;20417;20418;20419 30890;30891;30892;30893;30894;30895;30896 30892 7 IITPLNK HSWALSAIDELKVDKIITPLNKDHIPITDS IDELKVDKIITPLNKDHIPITDSPVVVQQH K I I N K D 0 0 1 0 0 0 0 0 0 2 1 1 0 0 1 0 1 0 0 0 0 0 7 0 797.50109 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 434 440 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.011602 97.596 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3818100 3818100 0 3818100 3818100 0 0 0 0 5614 29 5739 20420;20421 30897;30898 30898 2 IITYDLIK RKVGAVGRVNYLQKKIITYDLIKYDVEKDE VNYLQKKIITYDLIKYDVEKDEPVRDENGY K I I I K Y 0 0 0 1 0 0 0 0 0 3 1 1 0 0 0 0 1 0 1 0 0 0 8 0 977.57973 Q53GS2;O14975;G3V1R7;B3KW19 Q53GS2 391 398 SLC27A2 Very long-chain acyl-CoA synthetase yes no 2 0.035889 75.189 1 0.42977 0.5584 NaN 1 Median 0.42977 0.5584 NaN 1 0 Median NaN NaN NaN 0 0 Median 2167500 1457100 710400 2167500 1457100 710400 0 0 0 5615 1173 5740 20422 30899 30899 1 IIVDELK AATGPSIKIWDLEGKIIVDELKQEVISTSS KIWDLEGKIIVDELKQEVISTSSKAEPPQC K I I L K Q 0 0 0 1 0 0 1 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 7 0 828.49567 E9KL35;P63244;J3KPE3;H0Y8W2;H0YAF8;H0YAM7;D6RAC2;D6REE5;D6RF23;H0Y9P0 E9KL35 265 271 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 0.023305 71.852 2 1 1.093 1.3616 71.83 3 Median 0.98413 1.224 15.069 2 0 Median 2.7203 4.1891 NaN 1 0 Median 121990000 55992000 66000000 99494000 49646000 49848000 22499000 6346600 16152000 5616 1019 5741 20423;20424;20425 30900;30901;30902;30903 30901 4 IIYIAPMR KHINMDGTINVDDFKIIYIAPMRSLVQEMV INVDDFKIIYIAPMRSLVQEMVGSFGKRLA K I I M R S 1 1 0 0 0 0 0 0 0 3 0 0 1 0 1 0 0 0 1 0 0 0 8 0 975.55756 O75643;A4FU77;Q9H8B9;Q5ZF01 O75643 538 545 SNRNP200;ASCC3L1 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.021596 59.205 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2307400 2307400 0 0 0 0 2307400 2307400 0 5617 1206 5742 20426 30904 30904 439 1 IKADPDGPEAQAEACSGER ______________________________ PDGPEAQAEACSGERTYQELLVNQNPIAQP K I K E R T 4 1 0 2 1 1 3 2 0 1 0 1 0 0 2 1 0 0 0 0 0 0 19 1 1999.8905 D6RC52;D6RCB9;Q9NX24;J3QSY4 D6RC52 4 22 NHP2 H/ACA ribonucleoprotein complex subunit 2 yes no 2;3 6.3764E-20 151.28 6 2 0.67376 0.90126 20.845 7 Median 0.69904 0.91153 21.504 5 0 Median 0.48847 0.75114 12.004 2 0 Median 106740000 64180000 42561000 94391000 55584000 38807000 12349000 8595400 3753400 5618 990 5743 20427;20428;20429;20430;20431;20432;20433;20434 30905;30906;30907;30908;30909;30910;30911;30912;30913;30914;30915;30916 30908 12 IKDPRPLNDK GSRNSQLGIFSSSEKIKDPRPLNDKAFIQQ SSSEKIKDPRPLNDKAFIQQCIRQLCEFLT K I K D K A 0 1 1 2 0 0 0 0 0 1 1 2 0 0 2 0 0 0 0 0 0 0 10 2 1194.6721 A8K031;O14777;Q05DQ6 A8K031 80 89 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 3 0.040906 60.064 1 0.40981 0.51711 NaN 1 Median 0.40981 0.51711 NaN 1 0 Median NaN NaN NaN 0 0 Median 3890300 2308100 1582200 3890300 2308100 1582200 0 0 0 5619 574 5744 20435 30917 30917 1 IKEDILACSAAELNYGLAQFVR SKYANGETSKAKPMRIKEDILACSAAELNY CSAAELNYGLAQFVREITRPNGERYEPDSI R I K V R E 4 1 1 1 1 1 2 1 0 2 3 1 0 1 0 1 0 0 1 1 0 0 22 1 2480.2733 A6NHN7;A6NHB5;Q14202 A6NHN7 1094 1115 ZMYM3 Zinc finger MYM-type protein 3 yes no 3 0.00066233 58.093 1 0.71073 0.96748 NaN 1 Median 0.71073 0.96748 NaN 1 0 Median NaN NaN NaN 0 0 Median 1687400 1081200 606220 1687400 1081200 606220 0 0 0 5620 565 5745 20436 30918;30919;30920 30919 3 IKEDLEEQEALEDGVACADEK VLYLLELYCEDKQSKIKEDLEEQEALEDGV EQEALEDGVACADEKAESDGEEKEEVKEEL K I K E K A 3 0 0 3 1 1 6 1 0 1 2 2 0 0 0 0 0 0 0 1 0 0 21 1 2390.0795 O75691;B4DN27 O75691 2578 2598 UTP20 Small subunit processome component 20 homolog yes no 3 1.6548E-05 52.451 1 2 0.99767 1.2478 14.653 3 Plateau 0.99767 1.2478 NaN 1 0 Median 0.82504 1.2606 20.705 2 0 Median 19445000 9311000 10134000 7925100 3368100 4557000 11520000 5943000 5577100 5621 1207 5746 20437;20438;20439 30921;30922;30923;30924;30925 30922 5 IKEEPLDDEYDK SIGSELGNSFASNIRIKEEPLDDEYDKAMA NIRIKEEPLDDEYDKAMAPQQGLLDKIKDE R I K D K A 0 0 0 3 0 0 3 0 0 1 1 2 0 0 1 0 0 0 1 0 0 0 12 1 1492.6933 Q5VZL5 Q5VZL5 249 260 ZMYM4 Zinc finger MYM-type protein 4 yes yes 2 0.0025529 112.94 1 1.5985 1.93 NaN 1 Median 1.5985 1.93 NaN 1 0 Median NaN NaN NaN 0 0 Median 3203400 1112000 2091500 3203400 1112000 2091500 0 0 0 5622 1580 5747 20440 30926 30926 1 IKFPLPHR SKCRRPAVKQFHDSKIKFPLPHRVLRRQHK KQFHDSKIKFPLPHRVLRRQHKPRFTTKRP K I K H R V 0 1 0 0 0 0 0 0 1 1 1 1 0 1 2 0 0 0 0 0 0 0 8 1 1006.6076 Q02543;M0R3D6;M0R1A7;B2R4C0;M0R0P7;B4DM94;B4DUV3;Q53HD3;Q76N54 Q02543 150 157 RPL18A 60S ribosomal protein L18a yes no 3 0.012566 75.213 3 0.75552 0.9917 1.6327 2 Median 0.75552 0.9917 1.6327 2 0 Median NaN NaN NaN 0 0 Median 68985000 41306000 27678000 68985000 41306000 27678000 0 0 0 5623 1436 5748 20441;20442;20443 30927;30928;30929;30930;30931 30928 5 IKGEHPGLSIGDVAK PPSAFFLFCSEYRPKIKGEHPGLSIGDVAK IKGEHPGLSIGDVAKKLGEMWNNTAADDKQ K I K A K K 1 0 0 1 0 0 1 3 1 2 1 2 0 0 1 1 0 0 0 1 0 0 15 1 1519.8358 Q5T7C4;B7Z965;Q59GW1;A0A024RDR0;P09429;B3KQ05;B2RPK0 Q5T7C4 113 127 HMGB1;HMGB1P1 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 3 7.7971E-06 98.676 3 2 0.79525 1.0418 3.9539 5 Median 0.83093 1.0222 3.5555 3 0 Median 0.68076 1.0674 1.6836 2 0 Median 144820000 79613000 65206000 125580000 68658000 56920000 19240000 10955000 8285400 5624 322 5749 20444;20445;20446;20447;20448 30932;30933;30934;30935;30936;30937;30938;30939;30940;30941 30936 10 IKIEPDSEKDEVK MDESDKRKCSRSPKKIKIEPDSEKDEVKGS KKIKIEPDSEKDEVKGSDAAKGADQNEMDI K I K V K G 0 0 0 2 0 0 3 0 0 2 0 3 0 0 1 1 0 0 0 1 0 0 13 2 1528.7985 E7ETD6;Q12830;F5GXF5 E7ETD6 948 960 BPTF Nucleosome-remodeling factor subunit BPTF yes no 3 0.0017492 87.641 1 0.67819 0.76049 NaN 1 Median 0.67819 0.76049 NaN 1 0 Median NaN NaN NaN 0 0 Median 3486400 2073300 1413200 3486400 2073300 1413200 0 0 0 5625 1015 5750 20449 30942 30942 1 IKLDVPEDLR SVNPNKPATKDTFHKIKLDVPEDLRQMCAK DTFHKIKLDVPEDLRQMCAKEAAHKDFKKA K I K L R Q 0 1 0 2 0 0 1 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 10 1 1196.6765 X5DQX7;Q06787;W5ZQ92;R9WQY1;A8MQB8;G3V0J0;X5D907;R9WNI0;Q59GC1;R9WPL0;A0A087WXI3;A0A0K0MJ24;Q8IXW7;A0A087WY29 X5DQX7 129 138 FMR1 Fragile X mental retardation protein 1 yes no 3 0.042154 27.428 1 1.1433 1.4846 NaN 1 Median 1.1433 1.4846 NaN 1 0 Median NaN NaN NaN 0 0 Median 10310000 4536700 5773500 10310000 4536700 5773500 0 0 0 5626 1447 5751 20450 30943 30943 1 IKLEFETYLR IETPEQAKTRERSEKIKLEFETYLRRAMKR ERSEKIKLEFETYLRRAMKRFNKGVHEDTH K I K L R R 0 1 0 0 0 0 2 0 0 1 2 1 0 1 0 0 1 0 1 0 0 0 10 1 1310.7234 A0A024R2M8;X5DRB1;A8K146;Q01831;D2CPI9;D2CPJ0 A0A024R2M8 182 191 XPC DNA repair protein complementing XP-C cells yes no 3 0.0021941 81.338 2 1 0.64729 0.92751 18.212 2 Median 0.78641 1.055 NaN 1 0 Median 0.53278 0.81543 NaN 1 0 Median 14579000 11146000 3432900 9452800 7980700 1472100 5126100 3165400 1960800 5627 89 5752 20451;20452;20453 30944;30945;30946 30946 3 IKNENTEGSPQEDGVELEGLK TIEMKAEAEKKNKKKIKNENTEGSPQEDGV EGSPQEDGVELEGLKQRLEKKQKREPGTKT K I K L K Q 0 0 2 1 0 1 5 3 0 1 2 2 0 0 1 1 1 0 0 1 0 0 21 1 2285.1023 P11388 P11388 1239 1259 TOP2A DNA topoisomerase 2-alpha yes yes 3 6.5768E-13 114.1 4 2 0.82967 1.0647 3.9134 6 Median 0.86769 1.0638 4.8889 4 0 Median 0.66281 1.0647 1.2251 2 0 Median 178400000 101160000 77239000 115000000 63114000 51886000 63400000 38047000 25353000 5628 1256 5753 20454;20455;20456;20457;20458;20459 30947;30948;30949;30950;30951;30952;30953;30954;30955;30956;30957;30958;30959 30950 13 IKPAATSHVEGSGGVSAK ______________________________ AATSHVEGSGGVSAKGKRKPRQEEDEDYRE R I K A K G 3 0 0 0 0 0 1 3 1 1 0 2 0 0 1 3 1 0 0 2 0 0 18 1 1694.8951 B4DES6;B7Z9P6;G3XAG1;Q96ME7 B4DES6 6 23 ZNF512 Zinc finger protein 512 yes no 2;3 5.6703E-07 71.685 4 1 0.67199 0.85873 8.8036 4 Median 0.69637 0.84113 10.771 3 0 Median 0.55919 0.8767 NaN 1 0 Median 32731000 15623000 17108000 24719000 10508000 14211000 8011900 5115100 2896900 5629 799 5754 20460;20461;20462;20463;20464 30960;30961;30962;30963;30964;30965;30966 30965 7 IKPSESNVTILGR IVCWKPGKMEDDIDKIKPSESNVTILGRFD DKIKPSESNVTILGRFDYSQCDIWYMRFSM K I K G R F 0 1 1 0 0 0 1 1 0 2 1 1 0 0 1 2 1 0 0 1 0 0 13 1 1412.7987 O75530;B4DVW7;E9PJK2;H0YEL4;E9PMU3 O75530 343 355 EED Polycomb protein EED yes no 3 0.0096971 49.298 2 0.82168 1.081 9.9799 2 Median 0.82168 1.081 9.9799 2 0 Median NaN NaN NaN 0 0 Median 77146000 40265000 36881000 77146000 40265000 36881000 0 0 0 5630 1203 5755 20465;20466 30967;30968 30968 2 IKSDHPGISITDLSK PMSAYMLWLNASREKIKSDHPGISITDLSK IKSDHPGISITDLSKKAGEIWKGMSKEKKE K I K S K K 0 0 0 2 0 0 0 1 1 3 1 2 0 0 1 3 1 0 0 0 0 0 15 1 1609.8675 A0A024R4Z6;Q08945;A0A0U1RRK2 A0A024R4Z6 565 579 SSRP1 FACT complex subunit SSRP1 yes no 3 0.015079 27.208 1 1.0054 1.2452 NaN 1 Median 1.0054 1.2452 NaN 1 0 Median NaN NaN NaN 0 0 Median 11559000 5645300 5913200 11559000 5645300 5913200 0 0 0 5631 132 5756 20467 30969;30970;30971 30971 3 IKYPENFFLLR GKQSLETICLLLAYKIKYPENFFLLRGNHE LAYKIKYPENFFLLRGNHECASINRIYGFY K I K L R G 0 1 1 0 0 0 1 0 0 1 2 1 0 2 1 0 0 0 1 0 0 0 11 1 1438.7973 A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;A0A087WYY5;P62136;A0A140VJS9;B3KXM2;E9PMD7;V9HW04;P62140;B4DJ75;B7ZB67;E7ETD8;C9J9S3;C9JP48;B4E163 V9HW04 112 122 PPP1CC;PPP1CA;HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 3 0.00062065 107.34 3 2 0.95869 1.2693 8.7162 5 Median 0.97283 1.2693 0.96804 3 0 Plateau 0.83412 1.3554 15.741 2 0 Median 116790000 60980000 55809000 83321000 42301000 41020000 33468000 18679000 14789000 5632 1396;1397;279 5757 20468;20469;20470;20471;20472 30972;30973;30974;30975;30976;30977;30978;30979 30973 8 ILACHGTDSVLELFCILSK GRDRVVNLAVDKTGRILACHGTDSVLELFC HGTDSVLELFCILSKKEIQKKMDKKMKKAR R I L S K K 1 0 0 1 2 0 1 1 1 2 4 1 0 1 0 2 1 0 0 1 0 0 19 0 2175.1068 Q5TDG3;Q9UNX4 Q5TDG3 293 311 WDR3 WD repeat-containing protein 3 yes no 3 7.5255E-17 139.12 3 0.92564 1.1562 4.8092 3 Median 0.92564 1.1562 4.8092 3 0 Median NaN NaN NaN 0 0 Median 51474000 28128000 23346000 51474000 28128000 23346000 0 0 0 5633 1576 5758 20473;20474;20475 30980;30981;30982;30983;30984;30985 30980 6 ILADPSDDTK DVAYRCGYFDEEMNRILADPSDDTKGFFDP EEMNRILADPSDDTKGFFDPNTHENLTYLQ R I L T K G 1 0 0 3 0 0 0 0 0 1 1 1 0 0 1 1 1 0 0 0 0 0 10 0 1073.5241 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 1717 1726 EPPK1 Epiplakin no no 2 0.024193 51.066 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5634 373;1386 5759 20476 30986 30986 1 ILAGILHLGNVGFTSR TLLGISESHQMGIFRILAGILHLGNVGFTS LAGILHLGNVGFTSRDADSCTIPPKHEPLC R I L S R D 1 1 1 0 0 0 0 3 1 2 3 0 0 1 0 1 1 0 0 1 0 0 16 0 1666.9519 A8CDT9;A0A087WY00;G3V394;F8WE88;F8W6H6;Q9Y4I1;B4E147 A8CDT9 328 343 MYO5A Unconventional myosin-Va yes no 3 5.4752E-05 55.173 1 0.79283 1.0912 NaN 1 Median 0.79283 1.0912 NaN 1 0 Median NaN NaN NaN 0 0 Median 4692100 2673000 2019100 4692100 2673000 2019100 0 0 0 5635 361 5760 20477 30987 30987 1 ILAHNNFVGR KEAQDIKFTEEIPLKILAHNNFVGRLIGKE EIPLKILAHNNFVGRLIGKEGRNLKKIEQD K I L G R L 1 1 2 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 1 0 0 10 0 1139.62 Q9NZI8;D3DTW3;O00425 O00425 281 290 IGF2BP1;IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 1;Insulin-like growth factor 2 mRNA-binding protein 3 no no 3 0.0006394 107.69 3 0.61215 0.81648 9.0898 3 Median 0.61215 0.81648 9.0898 3 0 Median NaN NaN NaN 0 0 Median 43129000 26337000 16792000 43129000 26337000 16792000 0 0 0 5636 1167;1772 5761 20478;20479;20480 30988;30989;30990;30991;30992 30989 5 ILAIGLINEALDEGDAQK CVDHVNLVVQEEHERILAIGLINEALDEGD IGLINEALDEGDAQKTLQALQIPAAKLEGV R I L Q K T 3 0 1 2 0 1 2 2 0 3 3 1 0 0 0 0 0 0 0 0 0 0 18 0 1882.0048 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;Q6P1N4 A4QPB0 539 556 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 1.8549E-18 143.76 4 0.48099 0.60709 3.6035 3 Median 0.48099 0.60709 3.6035 3 0 Median NaN NaN NaN 0 0 Median 27232000 19960000 7272200 27232000 19960000 7272200 0 0 0 5637 287 5762 20481;20482;20483;20484 30993;30994;30995;30996 30993 4 ILALLDALSTVHSQK DRRRPAVIREPHERKILALLDALSTVHSQK ILALLDALSTVHSQKMKKAKEQRHLHNKEH K I L Q K M 2 0 0 1 0 1 0 0 1 1 4 1 0 0 0 2 1 0 0 1 0 0 15 0 1607.9247 Q14692 Q14692 1207 1221 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2;3 8.0581E-07 119.17 4 1.0412 1.3061 19.615 4 Median 1.0412 1.3061 19.615 4 0 Median NaN NaN NaN 0 0 Median 72468000 36384000 36083000 72468000 36384000 36083000 0 0 0 5638 1495 5763 20485;20486;20487;20488 30997;30998;30999;31000;31001;31002;31003 31001 6 ILAMNHLK TSLMLSLNHPLAPVRILAMNHLKKIMKTSK HPLAPVRILAMNHLKKIMKTSKEGVDESFI R I L L K K 1 0 1 0 0 0 0 0 1 1 2 1 1 0 0 0 0 0 0 0 0 0 8 0 938.53716 B2RWN5;Q9H583;Q5T3Q7 B2RWN5 496 503 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.018567 49.59 1 0.71274 1.0405 NaN 1 Median NaN NaN NaN 0 0 Median 0.71274 1.0405 NaN 1 0 Median 5489300 2696800 2792500 0 0 0 5489300 2696800 2792500 5639 748 5764 20489 31004;31005 31004 258 2 ILAQDVAQLK EEAKRHLNDLLEDRKILAQDVAQLKEKKES LEDRKILAQDVAQLKEKKESGENPPPKLRR K I L L K E 2 0 0 1 0 2 0 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1097.6445 Q59HG1;O95239;Q6PKB2;B3KNC0 Q59HG1 776 785 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 7.4361E-06 136.27 5 2 0.81027 1.0808 3.5616 5 Median 0.85975 1.0808 4.7923 3 0 Median 0.66997 1.0709 2.143 2 0 Median 307450000 178430000 129020000 180780000 105610000 75172000 126660000 72819000 53845000 5640 1216 5765 20490;20491;20492;20493;20494;20495;20496 31006;31007;31008;31009;31010;31011;31012;31013;31014;31015;31016;31017 31010 12 ILAQVVGDVDTSLPR SQRSFVEFILEPLYKILAQVVGDVDTSLPR ILAQVVGDVDTSLPRTLDELGIHLTKEELK K I L P R T 1 1 0 2 0 1 0 1 0 1 2 0 0 0 1 1 1 0 0 3 0 0 15 0 1581.8726 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 331 345 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 1.3074E-41 143.17 4 1 0.64476 0.86029 43.24 4 Median 0.60857 0.81567 8.8148 3 0 Median 1.2677 1.9381 NaN 1 0 Median 56387000 32619000 23768000 38403000 23570000 14833000 17984000 9048900 8934800 5641 654 5766 20497;20498;20499;20500;20501 31018;31019;31020;31021;31022;31023;31024 31023 7 ILCEAPVESVVQVSGTVISRPAGQENPK QVIIPQDESAASVKKILCEAPVESVVQVSG SGTVISRPAGQENPKMPTGEIEIKVKTAEL K I L P K M 2 1 1 0 1 2 3 2 0 2 1 1 0 0 3 3 1 0 0 5 0 0 28 1 2963.5386 A8K4A8;A0A024R8Z9;Q6PI48 A8K4A8 106 133 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 3 4.1953E-14 106.58 2 0.3679 0.47231 NaN 1 Median 0.3679 0.47231 NaN 1 0 Median NaN NaN NaN 0 0 Median 7422800 5355700 2067100 7422800 5355700 2067100 0 0 0 5642 209 5767 20502;20503 31025;31026;31027 31025 3 ILCFYGPPGVGK EFIAVSQLRGSTQGKILCFYGPPGVGKTSI QGKILCFYGPPGVGKTSIARSIARALNREY K I L G K T 0 0 0 0 1 0 0 3 0 1 1 1 0 1 2 0 0 0 1 1 0 0 12 0 1306.6744 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0;K7ER27 K7EJE8 388 399 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 2 0.027103 44.349 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2286500 2286500 0 2286500 2286500 0 0 0 0 5643 780 5768 20504 31028 31028 1 ILDAVVAQEPLHR EGPLCDELIRNVKFKILDAVVAQEPLHRGG FKILDAVVAQEPLHRGGGQIIPTARRVVYS K I L H R G 2 1 0 1 0 1 1 0 1 1 2 0 0 0 1 0 0 0 0 2 0 0 13 0 1459.8147 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;K7EP67;K7EJ74 B4DZB1 742 754 U5-116KD;EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 3 0.00021359 57.802 1 0.55616 0.75852 NaN 1 Median 0.55616 0.75852 NaN 1 0 Median NaN NaN NaN 0 0 Median 37541000 24261000 13280000 37541000 24261000 13280000 0 0 0 5644 654 5769 20505 31029 31029 1 ILDDDTIITTLENLK LEKSLLQALNEVKGRILDDDTIITTLENLK ILDDDTIITTLENLKREAAEVTRKVEETDI R I L L K R 0 0 1 3 0 0 1 0 0 3 3 1 0 0 0 0 3 0 0 0 0 0 15 0 1715.9193 Q14204 Q14204 3760 3774 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 1.4799E-05 111.12 1 0.50896 0.62825 NaN 1 Median 0.50896 0.62825 NaN 1 0 Median NaN NaN NaN 0 0 Median 1321600 986110 335460 1321600 986110 335460 0 0 0 5645 1483 5770 20506 31030;31031 31031 2 ILDDTEDTVVSQR KRKNSQPGVKVADRKILDDTEDTVVSQRKK RKILDDTEDTVVSQRKKIQINQEEERLKNE K I L Q R K 0 1 0 3 0 1 1 0 0 1 1 0 0 0 0 1 2 0 0 2 0 0 13 0 1489.726 P42696;A2A2V2;Q5TCT4 P42696 157 169 RBM34 RNA-binding protein 34 yes no 2 6.655E-26 202.56 4 0.95664 1.2869 4.189 4 Median 0.95664 1.2869 4.189 4 0 Median NaN NaN NaN 0 0 Median 56648000 27863000 28785000 56648000 27863000 28785000 0 0 0 5646 1339 5771 20507;20508;20509;20510 31032;31033;31034;31035;31036;31037;31038 31035 7 ILDEEVFEGDIQQLLFVSDHR HPMIDINGIIVFGTRILDEEVFEGDIQQLL FEGDIQQLLFVSDHRAAYDYCEHYSPDCDT R I L H R A 0 1 0 3 0 2 3 1 1 2 3 0 0 2 0 1 0 0 0 2 0 0 21 0 2501.2438 Q59EE7;B2ZZ86;A0A087WXW9;A0A024R8E5;P20908 Q59EE7 165 185 COL5A1 Collagen alpha-1(V) chain yes no 3 0.0015226 29.444 2 1.4645 2.0072 26.036 2 Median 1.4645 2.0072 26.036 2 0 Median NaN NaN NaN 0 0 Median 10974000 4245000 6728900 10974000 4245000 6728900 0 0 0 5647 197 5772 20511;20512 31039;31040;31041 31041 3 ILDLLNEGSAR ELQISPELLAHGRQKILDLLNEGSARDLRS GRQKILDLLNEGSARDLRSLQRIGPKKAQL K I L A R D 1 1 1 1 0 0 1 1 0 1 3 0 0 0 0 1 0 0 0 0 0 0 11 0 1199.651 Q14807;A0A024R632;B7Z9T5;H3BRB3;Q14985;O60846;Q14984 Q14807 592 602 KIF22;OBP-2;A-328A3.5;OBP-1 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 1.5513E-05 108.57 7 0.87724 1.2324 15.269 3 Median 0.87724 1.2324 15.269 3 0 Median NaN NaN NaN 0 0 Median 36716000 16189000 20527000 36716000 16189000 20527000 0 0 0 5648 1497 5773 20513;20514;20515;20516;20517;20518;20519 31042;31043;31044;31045;31046;31047;31048;31049;31050 31049 9 ILDLQLEFDEK FVAMIKENLEKMGPRILDLQLEFDEKAVLM MGPRILDLQLEFDEKAVLMENIVYLTNSLE R I L E K A 0 0 0 2 0 1 2 0 0 1 3 1 0 1 0 0 0 0 0 0 0 0 11 0 1361.7078 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3;Q9NPU8;Q9HAM7;B3KXA9 B4E266 961 971 LARS;DKFZp762P233 Leucine--tRNA ligase, cytoplasmic yes no 2 1.7591E-05 125.74 2 2 0.63686 0.8109 4.6464 2 Median 0.63686 0.8109 4.6464 2 0 Median NaN NaN NaN 0 0 Median 23662000 10336000 13326000 17220000 10336000 6883200 6442400 0 6442400 5649 732 5774 20520;20521;20522;20523 31051;31052;31053;31054 31052 4 ILDPEGLALGAVIASSK DGFEIVPIEDPAKHRILDPEGLALGAVIAS DPEGLALGAVIASSKKAKRDLIDNSFNRYT R I L S K K 3 0 0 1 0 0 1 2 0 2 3 1 0 0 1 2 0 0 0 1 0 0 17 0 1652.9349 Q8IY81;B4DKU3 Q8IY81 662 678 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 1.3883E-10 158.52 4 2 0.77646 1.0257 6.8211 6 Median 0.78019 0.983 8.38 4 0 Median 0.66555 1.0633 0.025653 2 0 Median 241290000 140760000 100530000 149310000 84260000 65054000 91978000 56501000 35478000 5650 1628 5775 20524;20525;20526;20527;20528;20529 31055;31056;31057;31058;31059;31060;31061;31062;31063;31064;31065;31066 31056 12 ILDSFAAAPVPTTTLVLK SEQSVAVMPEPSMTKILDSFAAAPVPTTTL SFAAAPVPTTTLVLKSSEPVVTMSVEYQMK K I L L K S 3 0 0 1 0 0 0 0 0 1 3 1 0 1 2 1 3 0 0 2 0 0 18 0 1856.0659 P18583;D3DSF7;B3KRA1 P18583 241 258 SON Protein SON yes no 2 0.00041614 106.79 5 0.47081 0.59096 11.259 4 Median 0.47081 0.59096 11.259 4 0 Median NaN NaN NaN 0 0 Median 27147000 18474000 8673400 27147000 18474000 8673400 0 0 0 5651 1282 5776 20530;20531;20532;20533;20534 31067;31068;31069;31070;31071;31072;31073;31074;31075 31074 9 ILDSVGIEADDDRLNK ALGGNSSPSAKDIKKILDSVGIEADDDRLN LDSVGIEADDDRLNKVISELNGKNIEDVIA K I L N K V 1 1 1 4 0 0 1 1 0 2 2 1 0 0 0 1 0 0 0 1 0 0 16 1 1771.8952 A0A024RCA7;P05387 A0A024RCA7 26 41 RPLP2 60S acidic ribosomal protein P2 yes no 2;3 1.9586E-24 163.51 7 3 0.81974 1.0994 6.1102 10 Median 0.85027 1.1278 7.0002 7 0 Median 0.6178 1.091 2.5001 3 0 Median 802740000 474560000 328180000 407600000 224950000 182660000 395140000 249620000 145520000 5652 291 5777 20535;20536;20537;20538;20539;20540;20541;20542;20543;20544 31076;31077;31078;31079;31080;31081;31082;31083;31084;31085;31086;31087;31088;31089;31090;31091 31081 16 ILDTGISVR RPQLAEQYYDMLIERILDTGISVRKRVIKI DMLIERILDTGISVRKRVIKILRDICIEQP R I L V R K 0 1 0 1 0 0 0 1 0 2 1 0 0 0 0 1 1 0 0 1 0 0 9 0 972.5604 Q6IEH8;Q6KC79 Q6IEH8 1857 1865 NIPBL Nipped-B-like protein yes no 2 0.0095589 64.265 2 0.51478 0.67862 1.3813 2 Median NaN NaN NaN 0 0 Median 0.51478 0.67862 1.3813 2 0 Median 9981000 6862400 3118600 0 0 0 9981000 6862400 3118600 5653 1586 5778 20545;20546 31092;31093 31092 2 ILDVGFEEELK MYKNLQCLVIDEADRILDVGFEEELKQIIK EADRILDVGFEEELKQIIKLLPTRRQTMLF R I L L K Q 0 0 0 1 0 0 3 1 0 1 2 1 0 1 0 0 0 0 0 1 0 0 11 0 1290.6707 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254;H7C452 Q4ZG72 214 224 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 0.00060567 78.655 2 2 0.86285 1.2138 6.6537 4 Median 1.0536 1.2908 1.9084 2 0 Median 0.72002 1.1523 0.56825 2 0 Median 153990000 81812000 72179000 57582000 27346000 30237000 96408000 54466000 41942000 5654 242 5779 20547;20548;20549;20550 31094;31095;31096;31097;31098;31099;31100 31097 7 ILDVLEEIPK MAGVLKKRLRILYTKILDVLEEIPKNAAYR ILYTKILDVLEEIPKNAAYRKYTEQITNEK K I L P K N 0 0 0 1 0 0 2 0 0 2 2 1 0 0 1 0 0 0 0 1 0 0 10 0 1167.6751 A0A087X1G1;H7BYD0;A0A024R745;Q16718;F8WAS3;C9IZN5 A0A087X1G1 16 25 NDUFA5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 yes no 2 0.0041526 65.224 1 0.36139 0.46334 NaN 1 Median 0.36139 0.46334 NaN 1 0 Median NaN NaN NaN 0 0 Median 3501200 2215500 1285700 3501200 2215500 1285700 0 0 0 5655 168 5780 20551 31101 31101 1 ILEDVVGVPEK EDEHFEFHSRPCPTKILEDVVGVPEKKVLP CPTKILEDVVGVPEKKVLPITVPKSPAFAL K I L E K K 0 0 0 1 0 0 2 1 0 1 1 1 0 0 1 0 0 0 0 3 0 0 11 0 1196.6653 Q643R0;Q9ULW0;B3KM90 Q643R0 466 476 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 0.00072039 77.379 2 2 0.65562 0.91382 3.657 4 Median 0.71675 0.88554 0.75735 2 0 Median 0.60566 0.94264 0.70382 2 0 Median 139120000 88177000 50944000 82658000 52677000 29981000 56464000 35500000 20963000 5656 1581 5781 20552;20553;20554;20555 31102;31103;31104;31105;31106;31107;31108 31107 7 ILEEIDTLILPENFK KLDRRVKATIEQFMKILEEIDTLILPENFK ILEEIDTLILPENFKDSRLKRKGLVKKVQA K I L F K D 0 0 1 1 0 0 3 0 0 3 3 1 0 1 1 0 1 0 0 0 0 0 15 0 1785.9764 A0A0S2Z3K4;J3QTA2;Q99933 A0A0S2Z3K4 217 231 BAG1 BAG family molecular chaperone regulator 1 yes no 2 1.0329E-15 121.02 2 0.4026 0.51163 16.423 2 Median 0.4026 0.51163 16.423 2 0 Median NaN NaN NaN 0 0 Median 15040000 10087000 4953600 15040000 10087000 4953600 0 0 0 5657 454 5782 20556;20557 31109;31110 31110 2 ILEFIAVSQLR VLEEDHYGMEDVKKRILEFIAVSQLRGSTQ VKKRILEFIAVSQLRGSTQGKILCFYGPPG R I L L R G 1 1 0 0 0 1 1 0 0 2 2 0 0 1 0 1 0 0 0 1 0 0 11 0 1287.7551 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0;K7ER27;A4VCH6 K7EJE8 371 381 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 2 2.5765E-05 100.48 3 0.57021 0.77144 NaN 1 Median 0.57021 0.77144 NaN 1 0 Median NaN NaN NaN 0 0 Median 4339500 2370100 1969400 4339500 2370100 1969400 0 0 0 5658 780 5783 20558;20559;20560 31111;31112;31113 31113 3 ILEGGPILPK KLQQYKFKARELDPRILEGGPILPKKPPVK ELDPRILEGGPILPKKPPVKPPTEPIGFDL R I L P K K 0 0 0 0 0 0 1 2 0 2 2 1 0 0 2 0 0 0 0 0 0 0 10 0 1035.6328 Q643R0;Q9ULW0;B3KM90 Q643R0 411 420 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 3.2707E-05 103.56 2 2 0.66994 0.96884 5.6813 4 Median 0.78459 0.97705 9.3858 2 0 Median 0.60553 0.96884 2.8333 2 0 Median 182090000 103190000 78903000 82971000 44503000 38468000 99121000 58687000 40435000 5659 1581 5784 20561;20562;20563;20564 31114;31115;31116;31117;31118;31119;31120;31121 31121 8 ILELDQFK NIYVLQELDNPGAKRILELDQFKGQQGQKR DNPGAKRILELDQFKGQQGQKRFQDMMGHG R I L F K G 0 0 0 1 0 1 1 0 0 1 2 1 0 1 0 0 0 0 0 0 0 0 8 0 1004.5542 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32 A0A024R1N4 116 123 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.0025986 87.754 3 3 0.56363 0.81701 30.077 3 Median 0.74492 0.93835 41.006 2 0 Median 0.55253 0.81701 NaN 1 0 Median 81955000 53179000 28775000 66861000 41505000 25356000 15094000 11674000 3419500 5660 62 5785 20565;20566;20567;20568;20569;20570 31122;31123;31124;31125;31126;31127;31128 31123 7 ILELSGSSSEDSEK EPACLAEIEEDKARRILELSGSSSEDSEKV RILELSGSSSEDSEKVIAGLYQRAFQHLSE R I L E K V 0 0 0 1 0 0 3 1 0 1 2 1 0 0 0 5 0 0 0 0 0 0 14 0 1479.694 P78527 P78527 3359 3372 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.0032E-19 171.92 5 2 0.49254 0.62696 44.959 5 Median 0.47318 0.57844 5.2659 3 0 Median 0.84979 1.3375 3.1038 2 0 Median 125470000 83215000 42252000 64352000 49793000 14559000 61115000 33422000 27693000 5661 1427 5786 20571;20572;20573;20574;20575;20576;20577 31129;31130;31131;31132;31133;31134;31135;31136;31137;31138;31139 31129 11 ILEQEEEEEQAGKPGEPSK AAVIKMEGGTENDLRILEQEEEEEQAGKPG EEEEEQAGKPGEPSKKEEGRAGAGLGDGER R I L S K K 1 0 0 0 0 2 7 2 0 1 1 2 0 0 2 1 0 0 0 0 0 0 19 1 2126.0015 Q9BXP5 Q9BXP5 267 285 SRRT Serrate RNA effector molecule homolog yes yes 3 1.9633E-06 54.805 1 2 2.5425 3.6909 113.52 3 Median 0.42357 0.53191 NaN 1 0 Median 2.5445 3.7976 4.0282 2 0 Median 14177000 6656900 7520000 5102400 3992800 1109600 9074500 2664100 6410400 5662 1722 5787 20578;20579;20580 31140;31141;31142;31143 31143 4 ILESITVSSLMATPQDPK PTSDEESTPKKSKARILESITVSSLMATPQ SITVSSLMATPQDPKGQGVGTGRSASKLRI R I L P K G 1 0 0 1 0 1 1 0 0 2 2 1 1 0 2 3 2 0 0 1 0 0 18 0 1929.0129 Q9NQS7;B3KPD3 Q9NQS7 227 244 INCENP Inner centromere protein yes no 2 4.7091E-23 133.04 8 2 1.0426 1.3207 12.789 9 Median 1.0899 1.367 9.1844 7 0 Median 0.67712 1.0695 2.9667 2 0 Median 376570000 212950000 163630000 55192000 27358000 27834000 321380000 185590000 135790000 5663 1752 5788;5789 20581;20582;20583;20584;20585;20586;20587;20588;20589;20590 31144;31145;31146;31147;31148;31149;31150;31151;31152;31153;31154;31155;31156;31157;31158;31159;31160;31161 31151 798 18 ILEVGGSLQDPPGELAVTANSR NNSLTLWVIDQGLKKILEVGGSLQDPPGEL LQDPPGELAVTANSRMSASILLSKLFDDLK K I L S R M 2 1 1 1 0 1 2 3 0 1 3 0 0 0 2 2 1 0 0 2 0 0 22 0 2222.1543 Q9H3U1 Q9H3U1 347 368 UNC45A Protein unc-45 homolog A yes yes 2 0.0090569 72.819 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5664 1731 5790 20591 31162 31162 1 ILFAQSEPLVPSAAALAR VFQGELVSSFDEEFRILFAQSEPLVPSAAA AQSEPLVPSAAALARMDAYALAPYAGAGPL R I L A R M 5 1 0 0 0 1 1 0 0 1 3 0 0 1 2 2 0 0 0 1 0 0 18 0 1853.0411 Q6ZRV2;J3KPS2 Q6ZRV2 276 293 FAM83H Protein FAM83H yes no 2 3.0082E-13 150.26 2 0.45836 0.60847 NaN 1 Median 0.45836 0.60847 NaN 1 0 Median NaN NaN NaN 0 0 Median 3262500 2543100 719390 3262500 2543100 719390 0 0 0 5665 1603 5791 20592;20593 31163;31164;31165 31164 3 ILFQEEQK I L Q K 0 0 0 0 0 2 2 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 8 0 1033.5444 REV__A0A075B6G4 yes no 2 0.0023997 115.46 4 0.90748 1.0331 6.3289 4 Linear 0.90748 1.0331 6.3289 4 0 Linear NaN NaN NaN 0 0 Median 103450000 52987000 50460000 103450000 52987000 50460000 0 0 0 + 5666 1838 5792 20594;20595;20596;20597 31166;31167;31168;31169;31170;31171;31172 31168 7 ILFRPVASQLPR ITGSKDLQNVNITLRILFRPVASQLPRIFT TLRILFRPVASQLPRIFTSIGEDYDERVLP R I L P R I 1 2 0 0 0 1 0 0 0 1 2 0 0 1 2 1 0 0 0 1 0 0 12 1 1395.8351 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0;C9JW96;C9JZ20;E7ESE2;E9PCW0;D6RBK0 Q6PUJ7 94 105 HEL-S-54e;PHB Prohibitin yes no 3 8.3619E-08 96.64 4 2 0.59937 0.82965 67.745 6 Median 0.56817 0.77855 9.1372 4 0 Median 1.8009 2.8558 5.2624 2 0 Median 846870000 512540000 334330000 719360000 462140000 257220000 127510000 50392000 77119000 5667 600 5793 20598;20599;20600;20601;20602;20603 31173;31174;31175;31176;31177;31178;31179;31180;31181 31176 9 ILGADTSVDLEETGR QKTGTAEMSSILEERILGADTSVDLEETGR ILGADTSVDLEETGRVLSIGDGIARVHGLR R I L G R V 1 1 0 2 0 0 2 2 0 1 2 0 0 0 0 1 2 0 0 1 0 0 15 0 1574.7788 K7ERX7;V9HW26;P25705;B4DGW3;K7EK77;K7EJP1;K7EQH4;K7ESA0 K7ERX7 59 73 ATP5A1;HEL-S-123m ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 2 0.00057546 59.57 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18269000 0 18269000 0 0 0 18269000 0 18269000 5668 1154 5794 20604;20605 31182;31183 31183 2 ILGENEEEEDLAESGR TKGAPKNTTKSWQGRILGENEEEEDLAESG LGENEEEEDLAESGRLFVRNLPYTSTEEDL R I L G R L 1 1 1 1 0 0 6 2 0 1 2 0 0 0 0 1 0 0 0 0 0 0 16 0 1788.8014 Q9Y4C8 Q9Y4C8 388 403 RBM19 Probable RNA-binding protein 19 yes yes 2 5.3988E-09 86.467 2 0.76878 1.0251 4.3753 2 Median NaN NaN NaN 0 0 Median 0.76878 1.0251 4.3753 2 0 Median 10891000 6224400 4666200 0 0 0 10891000 6224400 4666200 5669 1825 5795 20606;20607 31184;31185;31186;31187 31185 4 ILGGSVLHLVLALR SGKQMNDEKTAADYKILGGSVLHLVLALRG KILGGSVLHLVLALRGGGGLRQ________ K I L L R G 1 1 0 0 0 0 0 2 1 1 5 0 0 0 0 1 0 0 0 2 0 0 14 0 1459.9239 Q15843 Q15843 61 74 NEDD8 NEDD8 yes yes 2;3 2.3272E-07 118.87 6 0.80154 1.0834 9.6629 4 Median 0.80154 1.0834 9.6629 4 0 Median NaN NaN NaN 0 0 Median 31988000 18670000 13317000 31988000 18670000 13317000 0 0 0 5670 1517 5796 20608;20609;20610;20611;20612;20613 31188;31189;31190;31191;31192;31193;31194;31195 31194 8 ILGHLSSVYCVTFDR LVPTAVYQHMKMHKRILGHLSSVYCVTFDR ILGHLSSVYCVTFDRTGRRIFTGSDDCLVK R I L D R T 0 1 0 1 1 0 0 1 1 1 2 0 0 1 0 2 1 0 1 2 0 0 15 0 1765.8821 Q8WWQ0 Q8WWQ0 179 193 PHIP PH-interacting protein yes yes 3 6.2001E-06 109.07 3 0.89686 1.2333 7.1719 3 Median 0.89686 1.2333 7.1719 3 0 Median NaN NaN NaN 0 0 Median 35541000 19911000 15630000 35541000 19911000 15630000 0 0 0 5671 1668 5797 20614;20615;20616 31196;31197;31198;31199;31200 31198 5 ILGLLDAYLK HNKQATENAKEEVRRILGLLDAYLKTRTFL EEVRRILGLLDAYLKTRTFLVGERVTLADI R I L L K T 1 0 0 1 0 0 0 1 0 1 4 1 0 0 0 0 0 0 1 0 0 0 10 0 1117.6747 Q53YD7;P26641;B4DUP0;B4DUK7 Q53YD7 138 147 EEF1G Elongation factor 1-gamma yes no 2 0.00033112 101.64 5 3 0.29726 0.37026 4.176 3 Median 0.29726 0.37026 4.176 3 0 Median NaN NaN NaN 0 0 Median 66511000 39582000 26929000 53702000 39582000 14121000 12809000 0 12809000 5672 1299 5798 20617;20618;20619;20620;20621;20622;20623;20624 31201;31202;31203;31204;31205;31206;31207;31208;31209;31210 31205 10 ILGPFHK THIVNQNFKSYAGEKILGPFHKRFSCIIGP FKSYAGEKILGPFHKRFSCIIGPNGSGKSN K I L H K R 0 0 0 0 0 0 0 1 1 1 1 1 0 1 1 0 0 0 0 0 0 0 7 0 810.47521 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9JWF0;C9IYK2;C9JJ64 Q9NTJ3 100 106 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.023622 71.359 1 0.74202 0.92313 NaN 1 Median 0.74202 0.92313 NaN 1 0 Median NaN NaN NaN 0 0 Median 48108000 27907000 20202000 48108000 27907000 20202000 0 0 0 5673 1760 5799 20625 31211 31211 1 ILGPFHKR THIVNQNFKSYAGEKILGPFHKRFSCIIGP KSYAGEKILGPFHKRFSCIIGPNGSGKSNV K I L K R F 0 1 0 0 0 0 0 1 1 1 1 1 0 1 1 0 0 0 0 0 0 0 8 1 966.57632 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9JWF0;C9IYK2;C9JJ64 Q9NTJ3 100 107 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 0.0060076 53.166 3 0.73408 0.94542 10.616 3 Median 0.73408 0.94542 10.616 3 0 Median NaN NaN NaN 0 0 Median 23265000 13808000 9457400 23265000 13808000 9457400 0 0 0 5674 1760 5800 20626;20627;20628 31212;31213;31214;31215;31216 31215 5 ILGPGLNK DAFLASESLIKQIPRILGPGLNKAGKFPSL LIKQIPRILGPGLNKAGKFPSLLTHNENMV R I L N K A 0 0 1 0 0 0 0 2 0 1 2 1 0 0 1 0 0 0 0 0 0 0 8 0 810.49634 P62906;Q1JQ76;A0A024RCW3 P62906 123 130 RPL10A 60S ribosomal protein L10a;Ribosomal protein yes no 2 8.9675E-05 129.96 5 2 0.80859 1.0687 10.949 7 Median 0.82223 1.0873 12.117 5 0 Median 0.67296 1.013 1.1099 2 0 Median 1746100000 921240000 824880000 1710500000 899820000 810680000 35607000 21414000 14193000 5675 1415 5801 20629;20630;20631;20632;20633;20634;20635 31217;31218;31219;31220;31221;31222;31223;31224;31225;31226;31227;31228;31229;31230;31231;31232;31233;31234 31221 18 ILGPQGNTIK LIPVKQYPKFNFVGKILGPQGNTIKRLQEE NFVGKILGPQGNTIKRLQEETGAKISVLGK K I L I K R 0 0 1 0 0 1 0 2 0 2 1 1 0 0 1 0 1 0 0 0 0 0 10 0 1039.6026 B4DDX2;B2R7B5;Q07666;B4E043 B4DDX2 156 165 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 2 0.0013465 109.48 2 2 1.0611 1.4868 51.814 4 Median 0.73926 0.93799 4.6612 2 0 Median 1.5385 2.2983 1.1178 2 0 Median 110690000 59898000 50787000 92657000 53154000 39503000 18028000 6743900 11284000 5676 704 5802 20636;20637;20638;20639 31235;31236;31237;31238;31239 31237 5 ILGSLYAASEDQEK EKVLKAYPNNYETMKILGSLYAASEDQEKR KILGSLYAASEDQEKRDIAKGHLKKVTEQY K I L E K R 2 0 0 1 0 1 2 1 0 1 2 1 0 0 0 2 0 0 1 0 0 0 14 0 1522.7515 A8K6X9;Q6PD62 A8K6X9 380 393 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2 1.5508E-29 192.44 4 2 0.78768 0.99407 89.631 6 Median 0.73718 0.93279 7.1073 4 0 Median 3.5196 5.317 9.0791 2 0 Median 99621000 47232000 52389000 70881000 40289000 30593000 28740000 6943400 21797000 5677 629 5803 20640;20641;20642;20643;20644;20645 31240;31241;31242;31243;31244;31245;31246;31247;31248;31249 31243 10 ILHLQGEGDIVPK LNQNSSRSHSIFSIRILHLQGEGDIVPKIS IRILHLQGEGDIVPKISELSLCDLAGSERC R I L P K I 0 0 0 1 0 1 1 2 1 2 2 1 0 0 1 0 0 0 0 1 0 0 13 0 1417.7929 O95235 O95235 388 400 KIF20A Kinesin-like protein KIF20A yes yes 2;3 5.789E-11 143.76 3 4 0.59427 0.93749 25.066 7 Median 0.90836 1.1786 6.5449 3 0 Plateau 0.50798 0.7852 22.58 4 0 Median 199090000 115880000 83209000 100600000 53606000 46990000 98491000 62272000 36219000 5678 1215 5804 20646;20647;20648;20649;20650;20651;20652 31250;31251;31252;31253;31254;31255;31256;31257;31258 31254 9 ILIENGVAER ______________________________ DNRIRILIENGVAERQRSLFVVVGDRGKDQ R I L E R Q 1 1 1 0 0 0 2 1 0 2 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1112.619 Q05CW7;E9PMU0;E9PJN6;Q9H0A0 Q9H0A0 12 21 NAT10 N-acetyltransferase 10 no no 2 4.9614E-06 116.05 1 2 0.62877 1.023 13.007 3 Median 0.90909 1.2502 NaN 1 0 Median 0.62534 1.0011 3.0614 2 0 Median 129460000 75088000 54376000 44039000 22239000 21800000 85425000 52849000 32576000 5679 1730;1443 5805 20653;20654;20655 31259;31260;31261;31262;31263;31264 31259 6 ILIFSSR IPGPVCKGKWKNKERILIFSSRGINFRTRH GKWKNKERILIFSSRGINFRTRHLMQDLRM R I L S R G 0 1 0 0 0 0 0 0 0 2 1 0 0 1 0 2 0 0 0 0 0 0 7 0 834.49634 Q8TDN6;A0JLQ5;B4E0B8;Q9NUW4 Q8TDN6 62 68 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 2 0.0040201 163.84 5 2 0.97473 1.3448 5.4825 6 Median 1.001 1.3643 1.4113 4 0 Median 0.7871 1.2266 1.6186 2 0 Median 228320000 120640000 107680000 179070000 93569000 85497000 49255000 27069000 22186000 5680 1659 5806 20656;20657;20658;20659;20660;20661;20662 31265;31266;31267;31268;31269;31270;31271;31272;31273;31274;31275;31276;31277;31278;31279;31280;31281;31282;31283;31284;31285;31286 31265 22 ILILGLDGAGK FSSIFSSLFGTREMRILILGLDGAGKTTIL REMRILILGLDGAGKTTILYRLQVGEVVTT R I L G K T 1 0 0 1 0 0 0 3 0 2 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1068.6543 F8VYN9;P40616;F8VP99;F8VP63;B4DR16 F8VYN9 20 30 ARL1 ADP-ribosylation factor-like protein 1 yes no 2 0.00021912 83.948 3 1 0.41696 0.52987 6.7127 3 Median 0.41696 0.52987 6.7127 3 0 Median NaN NaN NaN 0 0 Median 26907000 16952000 9955500 24490000 16952000 7538900 2416600 0 2416600 5681 1063 5807 20663;20664;20665;20666 31287;31288;31289;31290;31291 31288 4 ILILQGLK ACEHVFIWDLRKGEKILILQGLKQEVTCLC DLRKGEKILILQGLKQEVTCLCPSPDGLHL K I L L K Q 0 0 0 0 0 1 0 1 0 2 3 1 0 0 0 0 0 0 0 0 0 0 8 0 896.60589 Q5TDG3;Q9UNX4 Q5TDG3 58 65 WDR3 WD repeat-containing protein 3 yes no 2 0.0060501 94.163 4 2 1.0617 1.0815 10.062 4 Linear 0.91106 1.1051 3.7988 3 0 Plateau 0.60345 0.90934 NaN 1 0 Median 103970000 49882000 54086000 90226000 40998000 49228000 13742000 8883600 4858000 5682 1576 5808 20667;20668;20669;20670;20671;20672 31292;31293;31294;31295;31296;31297;31298;31299 31294 8 ILITTSDRPHGR TDEFASYFNKQTSPKILITTSDRPHGRTVR SPKILITTSDRPHGRTVRLCEQLSTVIPNS K I L G R T 0 2 0 1 0 0 0 1 1 2 1 0 0 0 1 1 2 0 0 0 0 0 12 1 1364.7524 Q9H9Y2 Q9H9Y2 144 155 RPF1 Ribosome production factor 1 yes yes 3;4 1.6002E-05 70.488 3 1 0.67663 0.91591 15.873 4 Median 0.74571 1.0135 17.495 3 0 Median 0.61396 0.82768 NaN 1 0 Median 138310000 78603000 59709000 132840000 75448000 57387000 5477300 3154800 2322500 5683 1747 5809 20673;20674;20675;20676 31300;31301;31302;31303;31304;31305 31300 5 ILLAELEQLK ANYIDKVRFLEQQNKILLAELEQLKGQGKS EQQNKILLAELEQLKGQGKSRLGDLYEEEM K I L L K G 1 0 0 0 0 1 2 0 0 1 4 1 0 0 0 0 0 0 0 0 0 0 10 0 1168.7067 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;A0A1B0GUA0;A0A1B0GTT5 V9HWE1 130 139 HEL113;VIM Vimentin yes no 2 7.6013E-14 190.52 5 2 0.7894 1.0433 20.927 6 Median 0.76141 1.0034 4.1204 4 0 Median 0.95279 1.5071 9.2512 2 0 Median 879890000 472380000 407510000 658150000 368910000 289240000 221740000 103470000 118280000 5684 1245 5810 20677;20678;20679;20680;20681;20682;20683 31306;31307;31308;31309;31310;31311;31312;31313;31314;31315;31316;31317;31318;31319;31320;31321;31322;31323 31306 18 ILLDPNSEEVSEK EDEEEESSRQETEEKILLDPNSEEVSEKDA EKILLDPNSEEVSEKDAKQIIETAKQDVDD K I L E K D 0 0 1 1 0 0 3 0 0 1 2 1 0 0 1 2 0 0 0 1 0 0 13 0 1471.7406 P51531;A0A0U1RQZ9;F6VDE0;B4DK35 P51531 660 672 SMARCA2 Probable global transcription activator SNF2L2 yes no 2 0.025783 42.743 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4341200 0 4341200 4341200 0 4341200 0 0 0 5685 1362 5811 20684 31324 31324 1 ILLDSGLEK EFMDAVCDGVGLGMKILLDSGLEKAKELQH VGLGMKILLDSGLEKAKELQHELFRQCTKN K I L E K A 0 0 0 1 0 0 1 1 0 1 3 1 0 0 0 1 0 0 0 0 0 0 9 0 986.56481 Q15058 Q15058 1427 1435 KIF14 Kinesin-like protein KIF14 yes yes 2 0.0079976 90.601 4 0.75679 0.97115 9.6755 4 Median 0.75679 0.97115 9.6755 4 0 Median NaN NaN NaN 0 0 Median 18226000 8423300 9802500 18226000 8423300 9802500 0 0 0 5686 1504 5812 20685;20686;20687;20688 31325;31326;31327;31328 31327 4 ILLEELANSDPK PTGIEDEDALIADVKILLEELANSDPKLAL DVKILLEELANSDPKLALTGVPIVQWPKRD K I L P K L 1 0 1 1 0 0 2 0 0 1 3 1 0 0 1 1 0 0 0 0 0 0 12 0 1340.7187 I3VM54;I3VM53;Q9Y2K7;B4DSG1 I3VM54 477 488 KDM2A Lysine-specific demethylase 2A yes no 2 0.0073778 55.567 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2124100 2124100 0 2124100 2124100 0 0 0 0 5687 1128 5813 20689 31329 31329 1 ILLGSEQGSLQLWNVK FKISAILHPSTYLNKILLGSEQGSLQLWNV LLGSEQGSLQLWNVKSNKLLYTFPGWKVGV K I L V K S 0 0 1 0 0 2 1 2 0 1 4 1 0 0 0 2 0 1 0 1 0 0 16 0 1783.9832 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 164 179 WDR36 WD repeat-containing protein 36 yes no 2 0.0048377 38.021 1 0.67699 1.0215 NaN 1 Median NaN NaN NaN 0 0 Median 0.67699 1.0215 NaN 1 0 Median 16177000 9561300 6615700 0 0 0 16177000 9561300 6615700 5688 404 5814 20690 31330 31330 1 ILLNCPYCTFNADK KSHFRNVHSEDFENRILLNCPYCTFNADKK RILLNCPYCTFNADKKTLETHIKIFHAPNA R I L D K K 1 0 2 1 2 0 0 0 0 1 2 1 0 1 1 0 1 0 1 0 0 0 14 0 1727.8011 Q6DHZ8;B2RBM8;Q9H2P0;E9PQK8 Q6DHZ8 105 118 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.010936 92.611 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5689 729 5815 20691 31331 31331 1 ILLQHICAK ALVDELKESIFPVVRILLQHICAKVVDKSE IFPVVRILLQHICAKVVDKSEYRTFAAQSL R I L A K V 1 0 0 0 1 1 0 0 1 2 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1094.627 P42695;G3V1A9;E9PKK4 P42695 355 363 NCAPD3 Condensin-2 complex subunit D3 yes no 3 0.045182 24.222 1 0.80801 1.0129 NaN 1 Median 0.80801 1.0129 NaN 1 0 Median NaN NaN NaN 0 0 Median 8735400 4752200 3983200 8735400 4752200 3983200 0 0 0 5690 1338 5816 20692 31332 31332 1 ILLSSLR ______________________________ ______________________________ R I L L R F 0 1 0 0 0 0 0 0 0 1 3 0 0 0 0 2 0 0 0 0 0 0 7 0 800.51199 F8W1U3;A0A0U1RQU6 F8W1U3 8 14 KRT8 yes no 2 0.032251 96.048 1 0.37268 0.49916 NaN 1 Median 0.37268 0.49916 NaN 1 0 Median NaN NaN NaN 0 0 Median 8546700 6312000 2234700 8546700 6312000 2234700 0 0 0 5691 1068 5817 20693 31333 31333 1 ILLTLGIR DANWCGYLHRRDLERILLTLGIRLSAEQAK HRRDLERILLTLGIRLSAEQAKQLVSRVVT R I L I R L 0 1 0 0 0 0 0 1 0 2 3 0 0 0 0 0 1 0 0 0 0 0 8 0 897.60114 A0A087X2B6;E2PSM9;G3V119;H0YB24;B3KTJ9;Q8N163 A0A087X2B6 191 198 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 2 0.021977 57.281 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5692 377 5818 20694 31334 31334 1 ILLTQENPFFR FINSRIITVSMEDVKILLTQENPFFRKLSS EDVKILLTQENPFFRKLSSETYSQAKDLAK K I L F R K 0 1 1 0 0 1 1 0 0 1 2 0 0 2 1 0 1 0 0 0 0 0 11 0 1376.7452 Q08J23 Q08J23 629 639 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 4.0906E-29 190.26 2 2 2.5032 3.682 141.81 3 Median 0.25038 0.33359 NaN 1 0 Median 2.5334 3.8831 7.5225 2 0 Median 84088000 44532000 39556000 37254000 31722000 5531800 46834000 12810000 34024000 5693 1451 5819 20695;20696;20697;20698 31335;31336;31337;31338 31336 4 ILMEHIHK SLYLKVKGNVFKNKRILMEHIHKLKADKAR NVFKNKRILMEHIHKLKADKARKKLLADQA R I L H K L 0 0 0 0 0 0 1 0 2 2 1 1 1 0 0 0 0 0 0 0 0 0 8 0 1019.5586 J3QR09;J3KTE4;Q53G49;P84098;Q8IWR8 J3QR09 134 141 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 2;3 1.3548E-05 140.98 10 2 0.91269 1.1502 41.17 12 Median 0.92089 1.165 9.2057 10 0 Median 0.27111 0.40956 2.1496 2 0 Median 278550000 147300000 131250000 252590000 127050000 125530000 25958000 20242000 5715300 5694 1138 5820;5821 20699;20700;20701;20702;20703;20704;20705;20706;20707;20708;20709;20710 31339;31340;31341;31342;31343;31344;31345;31346;31347;31348;31349;31350;31351;31352;31353;31354;31355;31356;31357 31346 406 19 ILNDDTALK DAFPVAGQKLIYAGKILNDDTALKEYKIDE LIYAGKILNDDTALKEYKIDEKNFVVVMVT K I L L K E 1 0 1 2 0 0 0 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1001.5393 P54727;Q53F10;B7Z4W4;B4DEA3;B7ZA74;Q5W0S5;Q5W0S4 P54727 52 60 RAD23B UV excision repair protein RAD23 homolog B yes no 2 0.0018731 90.657 1 2 0.77255 1.0245 5.4236 3 Plateau 0.77255 0.96122 NaN 1 0 Median 0.68206 1.0474 3.1174 2 0 Median 95417000 55931000 39486000 46442000 27640000 18802000 48976000 28291000 20685000 5695 1374 5822 20711;20712;20713 31358;31359;31360;31361 31359 4 ILNDLSSDAPGVPR QKRREILSRRPSYRKILNDLSSDAPGVPRI KILNDLSSDAPGVPRIEEEKSEEETSAPAI K I L P R I 1 1 1 2 0 0 0 1 0 1 2 0 0 0 2 2 0 0 0 1 0 0 14 0 1452.7573 Q53X93;Q5U0J5;P16220;C9J4L5;B7Z7P1;C9JBT4;H7C3I0;E7EWP8;B7Z5C6;C9J896;Q4ZG78 Q53X93 123 136 CREB1 Cyclic AMP-responsive element-binding protein 1 yes no 2 9.8889E-05 69.721 1 0.65606 0.90733 NaN 1 Median 0.65606 0.90733 NaN 1 0 Median NaN NaN NaN 0 0 Median 11635000 6322900 5312000 11635000 6322900 5312000 0 0 0 5696 1272 5823 20714 31362 31362 1 ILNDVQDRFEVNVAELPEEIDISTYIEQSR KGLAITFVSDENDAKILNDVQDRFEVNVAE LPEEIDISTYIEQSR_______________ K I L S R - 1 2 2 3 0 2 5 0 0 4 2 0 0 1 1 2 1 0 1 3 0 0 30 1 3533.7526 O00148;B4DX78 O00148 398 427 DDX39A ATP-dependent RNA helicase DDX39A yes no 3 0.01182 53.545 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1297600 1297600 0 1297600 1297600 0 0 0 0 5697 1164 5824 20715 31363 31363 1 ILNFLMHPK LDLERSGVNSELVKRILNFLMHPKPSGKPL SELVKRILNFLMHPKPSGKPLPKSKKTCSK R I L P K P 0 0 1 0 0 0 0 0 1 1 2 1 1 1 1 0 0 0 0 0 0 0 9 0 1111.6212 P35659;B4DFG0;D6RDA2;H0Y8X0 P35659 179 187 DEK Protein DEK yes no 2 0.051723 43.858 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1035600 1035600 0 0 0 0 1035600 1035600 0 5698 1322 5825 20716 31364 31364 1 ILNHSVDK FYRYGIKPEWMMIHRILNHSVDKKGHVHYL EWMMIHRILNHSVDKKGHVHYLIKWRDLPY R I L D K K 0 0 1 1 0 0 0 0 1 1 1 1 0 0 0 1 0 0 0 1 0 0 8 0 924.50288 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 601 608 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.0028051 106.36 1 1.0581 1.5381 NaN 1 Median NaN NaN NaN 0 0 Median 1.0581 1.5381 NaN 1 0 Median 6674600 3102400 3572200 0 0 0 6674600 3102400 3572200 5699 428 5826 20717 31365;31366 31365 2 ILNHVLQHAEPGNAQSVLEAIDTYCEQK QPIHNLLMGDTKEQRILNHVLQHAEPGNAQ AQSVLEAIDTYCEQKEWAMNVGDKKGKIVD R I L Q K E 3 0 2 1 1 3 3 1 2 2 3 1 0 0 1 1 1 0 1 2 0 0 28 0 3176.5561 A0A140VJG8;P21964;B8XPJ7;E7EMS6;B8XPJ8;E7EUU8;F8WBW9;A3F6Y9 A0A140VJG8 59 86 COMT Catechol O-methyltransferase yes no 4 0.0075541 36.948 2 0.67795 0.85951 5.9787 2 Median 0.67795 0.85951 5.9787 2 0 Median NaN NaN NaN 0 0 Median 14580000 8082100 6497400 14580000 8082100 6497400 0 0 0 5700 495 5827 20718;20719 31367;31368 31367 1 ILNITDVVAACR FTPTPHNDKEAMTRKILNITDVVAACRDTG TRKILNITDVVAACRDTGYDWFEQLLQNLL K I L C R D 2 1 1 1 1 0 0 0 0 2 1 0 0 0 0 0 1 0 0 2 0 0 12 0 1343.7231 Q6IEH8;Q6KC79 Q6IEH8 1930 1941 NIPBL Nipped-B-like protein yes no 2 3.6005E-05 87.913 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5701 1586 5828 20720 31369 31369 1 ILNLLSPSDGER EQMGDHKMAMDGYRRILNLLSPSDGERFMQ YRRILNLLSPSDGERFMQLARDMAKSYYEA R I L E R F 0 1 1 1 0 0 1 1 0 1 3 0 0 0 1 2 0 0 0 0 0 0 12 0 1312.6987 Q9Y5Q9 Q9Y5Q9 277 288 GTF3C3 General transcription factor 3C polypeptide 3 yes yes 2 4.3705E-05 86.624 1 1 0.52301 0.6947 NaN 1 Median 0.52301 0.6947 NaN 1 0 Median NaN NaN NaN 0 0 Median 14551000 10053000 4497700 14551000 10053000 4497700 0 0 0 5702 1831 5829 20721;20722 31370;31371;31372 31370 3 ILNMDFETEVDK NLRALKYLVMDEADRILNMDFETEVDKILK ADRILNMDFETEVDKILKVNPRDRKTFLFS R I L D K I 0 0 1 2 0 0 2 0 0 1 1 1 1 1 0 0 1 0 0 1 0 0 12 0 1452.6806 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;A4UCU0;F5H1N9 Q53GJ1 172 183 hCG_27698;DDX47;E4-DBP Probable ATP-dependent RNA helicase DDX47 yes no 2 0.00096564 59.84 3 0.43509 0.65171 3.0145 2 Median NaN NaN NaN 0 0 Median 0.43509 0.65171 3.0145 2 0 Median 26717000 14165000 12552000 0 0 0 26717000 14165000 12552000 5703 249 5830 20723;20724;20725 31373;31374;31375 31373 98 3 ILNNSGLPITSAIDLEDAAK LVVRLEGTNVQEAQKILNNSGLPITSAIDL GLPITSAIDLEDAAKKAVASVAKK______ K I L A K K 3 0 2 2 0 0 1 1 0 3 3 1 0 0 1 2 1 0 0 0 0 0 20 0 2054.0895 A0A024R325;Q96I99;H0Y852;Q9Y436;Q3ZCW5 A0A024R325 404 423 SUCLG2;DKFZp586M2023 Succinyl-CoA ligase subunit beta;Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes no 2 0.0086351 54.09 2 0.46397 0.59422 31.068 2 Median 0.46397 0.59422 31.068 2 0 Median NaN NaN NaN 0 0 Median 2703700 1668900 1034800 2703700 1668900 1034800 0 0 0 5704 96 5831 20726;20727 31376;31377 31376 2 ILPDDPDKKPQAK WEMIKMDPDLSLTHKILPDDPDKKPQAKQL HKILPDDPDKKPQAKQLQTRADYLIKLLSR K I L A K Q 1 0 0 3 0 1 0 0 0 1 1 3 0 0 3 0 0 0 0 0 0 0 13 2 1463.7984 O14646 O14646 1288 1300 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 3 0.0090075 38.769 1 0.60025 0.98799 NaN 1 Median NaN NaN NaN 0 0 Median 0.60025 0.98799 NaN 1 0 Median 3517500 2085900 1431600 0 0 0 3517500 2085900 1431600 5705 1169 5832 20728 31378 31378 1 ILPEAHQR MAQAASAAVTRGDLRILPEAHQRTWHAWMD VTRGDLRILPEAHQRTWHAWMDNIREWCIS R I L Q R T 1 1 0 0 0 1 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 8 0 962.52976 A0A024RCN6;P26640;A0A140T936;B4DT32 A0A024RCN6 700 707 VARS Valine--tRNA ligase yes no 3 0.0039072 96.492 1 0.47585 0.66361 NaN 1 Median 0.47585 0.66361 NaN 1 0 Median NaN NaN NaN 0 0 Median 4373300 3416300 956990 4373300 3416300 956990 0 0 0 5706 297 5833 20729 31379 31379 1 ILPKPTRK KKFSGKHVVFIAQRRILPKPTRKSRTKNKQ VFIAQRRILPKPTRKSRTKNKQKRPRSRTL R I L R K S 0 1 0 0 0 0 0 0 0 1 1 2 0 0 2 0 1 0 0 0 0 0 8 2 951.62294 P62081;B5MCP9 P62081 100 107 RPS7 40S ribosomal protein S7 yes no 3 0.011832 92.47 2 0.78424 0.95783 15.19 2 Median 0.78424 0.95783 15.19 2 0 Median NaN NaN NaN 0 0 Median 52008000 26303000 25705000 52008000 26303000 25705000 0 0 0 5707 1395 5834 20730;20731 31380;31381 31380 2 ILPQDLER ARAERRLLRARKKGRILPQDLERAGLV___ RARKKGRILPQDLERAGLV___________ R I L E R A 0 1 0 1 0 1 1 0 0 1 2 0 0 0 1 0 0 0 0 0 0 0 8 0 982.54475 B3KNS8;O75683 B3KNS8 350 357 SURF6 Surfeit locus protein 6 yes no 2 0.01112 71.342 1 2 0.64584 1.1492 14.02 3 Plateau 0.87356 1.1556 NaN 1 0 Median 0.64388 0.90698 1.4052 2 0 Median 29573000 15502000 14071000 10936000 4635900 6300400 18637000 10866000 7770500 5708 760 5835 20732;20733;20734 31382;31383;31384;31385;31386;31387 31385 6 ILPTLEAVAALGNK MTTGHNVADLVVILKILPTLEAVAALGNKV KILPTLEAVAALGNKVVESLRAQDPSEVLT K I L N K V 3 0 1 0 0 0 1 1 0 1 3 1 0 0 1 0 1 0 0 1 0 0 14 0 1408.829 B4DY09;Q53FG3;F4ZW62;Q12905;X6R6Z1;F4ZW63 B4DY09 90 103 ILF2 Interleukin enhancer-binding factor 2 yes no 2 2.0722E-05 113.44 4 1 0.8441 1.046 15.307 5 Median 0.80577 1.0164 5.9337 4 0 Median 1.0004 1.387 NaN 1 0 Median 64886000 35616000 29270000 60120000 33463000 26657000 4766200 2153100 2613200 5709 871 5836 20735;20736;20737;20738;20739 31388;31389;31390;31391;31392;31393;31394 31389 7 ILPVFDEPPNPTNVEESLK GVDQEHFSNVVKGEKILPVFDEPPNPTNVE FDEPPNPTNVEESLKRTKENDAHLVEVNLN K I L L K R 0 0 2 1 0 0 3 0 0 1 2 1 0 1 4 1 1 0 0 2 0 0 19 0 2137.0943 Q5HYL6;Q9NYL9;H0YKU1;H0YNJ8 Q5HYL6 173 191 DKFZp686E1899;TMOD3 Tropomodulin-3 yes no 2 4.6213E-24 158.86 4 1.1449 1.4336 2.8976 4 Median 1.1449 1.4336 2.8976 4 0 Median NaN NaN NaN 0 0 Median 67115000 31141000 35974000 67115000 31141000 35974000 0 0 0 5710 1558 5837 20740;20741;20742;20743 31395;31396;31397;31398;31399 31396 5 ILPVGGIK RQNLAMTGEVSLTGKILPVGGIKEKTIAAK EVSLTGKILPVGGIKEKTIAAKRAGVTCIV K I L I K E 0 0 0 0 0 0 0 2 0 2 1 1 0 0 1 0 0 0 0 1 0 0 8 0 795.52182 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0;K7ERR6 K7EJE8 759 766 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 2 0.036561 74.439 1 0.49897 0.63644 NaN 1 Median 0.49897 0.63644 NaN 1 0 Median NaN NaN NaN 0 0 Median 3590700 2255300 1335500 3590700 2255300 1335500 0 0 0 5711 780 5838 20744 31400 31400 1 ILQAVNFPFLVR VVKLKQIEHTLNEKRILQAVNFPFLVRLEY EKRILQAVNFPFLVRLEYAFKDNSNLYMVM R I L V R L 1 1 1 0 0 1 0 0 0 1 2 0 0 2 1 0 0 0 0 2 0 0 12 0 1415.8289 B1APF7;B1APG1;B1APG0;B1APG2;B1APF8;B1APF9;B1APG3;B7ZA00;A0A087WVC4;B2RB89;A0A0A0MS54;B4E2L0;P22694 B1APF7 99 110 PRKACB cAMP-dependent protein kinase catalytic subunit beta yes no 2 0.0010974 107.57 2 0.37033 0.48201 NaN 1 Median 0.37033 0.48201 NaN 1 0 Median NaN NaN NaN 0 0 Median 1121500 877860 243680 1121500 877860 243680 0 0 0 5712 347 5839 20745;20746 31401;31402 31401 2 ILQCYR KRYESHPVCADLQAKILQCYRENTHQTLKC PVCADLQAKILQCYRENTHQTLKCSALATQ K I L Y R E 0 1 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 6 0 851.43236 A4D1N4;C9JRZ6;Q9NX63 A4D1N4 190 195 CHCHD3 MICOS complex subunit MIC19 yes no 2 0.024803 105.82 2 0.32535 0.43295 NaN 1 Median 0.32535 0.43295 NaN 1 0 Median NaN NaN NaN 0 0 Median 33533000 29195000 4337400 33533000 29195000 4337400 0 0 0 5713 549 5840 20747;20748 31403;31404 31403 2 ILQDGGLQVVEK RKVLISDSLDPCCRKILQDGGLQVVEKQNL CRKILQDGGLQVVEKQNLSKEELIAELQDC K I L E K Q 0 0 0 1 0 2 1 2 0 1 2 1 0 0 0 0 0 0 0 2 0 0 12 0 1297.7242 O43175 O43175 22 33 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 2 7.1336E-12 124.42 4 2 0.71722 0.90885 97.027 5 Median 0.71447 0.89754 4.5266 4 0 Median 5.129 7.7243 NaN 1 0 Median 146910000 73127000 73785000 119050000 70042000 49009000 27861000 3084700 24776000 5714 1182 5841 20749;20750;20751;20752;20753;20754 31405;31406;31407;31408;31409;31410;31411;31412 31407 8 ILQDSLGGR ERTPHVPYRESKLTRILQDSLGGRTRTSII ESKLTRILQDSLGGRTRTSIIATISPASLN R I L G R T 0 1 0 1 0 1 0 2 0 1 2 0 0 0 0 1 0 0 0 0 0 0 9 0 957.52434 P52732;B2RAM6 P52732 319 327 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 2 2.8519E-05 86.953 2 0.39575 0.55888 NaN 1 Median 0.39575 0.55888 NaN 1 0 Median NaN NaN NaN 0 0 Median 4043800 2822800 1221000 4043800 2822800 1221000 0 0 0 5715 1366 5842 20755;20756 31413;31414 31414 2 ILQEDPTNTAAR EAMERYDDAIQLYDRILQEDPTNTAARKRK YDRILQEDPTNTAARKRKIAIRKAQGKNVE R I L A R K 2 1 1 1 0 1 1 0 0 1 1 0 0 0 1 0 2 0 0 0 0 0 12 0 1327.6732 H0YAS9;Q53HG5;A8K4K9;Q15006 H0YAS9 61 72 EMC2 ER membrane protein complex subunit 2 yes no 2 0.0022018 56.258 1 2 0.66836 0.9121 60.682 2 Median 0.44809 0.59387 NaN 1 0 Median 0.9969 1.4008 NaN 1 0 Median 16746000 11300000 5446700 6462900 4250600 2212300 10284000 7049100 3234400 5716 605 5843 20757;20758;20759 31415;31416;31417;31418 31416 4 ILQELPSVSQETLK DRSLPALKIREELLKILQELPSVSQETLKH KILQELPSVSQETLKHSGIGRAVMYLYKHP K I L L K H 0 0 0 0 0 2 2 0 0 1 3 1 0 0 1 2 1 0 0 1 0 0 14 0 1583.877 A0A1B0GW95;B4DGM5;B4DL52;Q96ST2 A0A1B0GW95 29 42 IWS1 Protein IWS1 homolog yes no 2 1.5231E-06 127.87 4 0.67058 0.85961 12.363 4 Median 0.67058 0.85961 12.363 4 0 Median NaN NaN NaN 0 0 Median 28445000 15457000 12988000 28445000 15457000 12988000 0 0 0 5717 521 5844 20760;20761;20762;20763 31419;31420;31421;31422;31423;31424;31425;31426;31427;31428 31420 10 ILQGGVGIPHIR KARHPQLLYESKLYKILQGGVGIPHIRWYG LYKILQGGVGIPHIRWYGQEKDYNVLVMDL K I L I R W 0 1 0 0 0 1 0 3 1 3 1 0 0 0 1 0 0 0 0 1 0 0 12 0 1258.751 Q05DL3;V9HW00;P48729;Q6PJ06;E5RG27;D6RGE5 Q05DL3 66 77 CSNK1A1;HEL-S-77p Casein kinase I isoform alpha yes no 3 0.0060386 61.344 2 0.33239 0.45893 NaN 1 Median 0.33239 0.45893 NaN 1 0 Median NaN NaN NaN 0 0 Median 13223000 9577000 3645900 13223000 9577000 3645900 0 0 0 5718 1349 5845 20764;20765 31429;31430 31430 2 ILQIITELIK RKKLENPKMSLENDKILQIITELIKTENNN LENDKILQIITELIKTENNN__________ K I L I K T 0 0 0 0 0 1 1 0 0 4 2 1 0 0 0 0 1 0 0 0 0 0 10 0 1182.7588 A0A087WYN9;Q7Z478 A0A087WYN9 1356 1365 DHX29 ATP-dependent RNA helicase DHX29 yes no 2 3.6062E-09 107.57 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5719 364 5846 20766 31431 31431 1 ILQLQEK VVIHRFVCEGTVEEKILQLQEKKKDLAKQV CEGTVEEKILQLQEKKKDLAKQVLSGSGES K I L E K K 0 0 0 0 0 2 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 870.51747 A0A024R0F1;Q9UNY4;X6RI15 A0A024R0F1 1126 1132 TTF2 Transcription termination factor 2 yes no 2 0.042181 90.706 1 1.4183 1.7953 NaN 1 Median 1.4183 1.7953 NaN 1 0 Median NaN NaN NaN 0 0 Median 13891000 5578800 8312000 13891000 5578800 8312000 0 0 0 5720 33 5847 20767 31432 31432 0 ILQLVATGAVR YGRLNLHYAVVSKRKILQLVATGAVRDWDD SKRKILQLVATGAVRDWDDPRLFTLTALRR K I L V R D 2 1 0 0 0 1 0 1 0 1 2 0 0 0 0 0 1 0 0 2 0 0 11 0 1139.7026 B4DNN3;Q53HS0;A8K3A8;P47897;Q9H3A5;Q9BUZ3;B4DDN1;Q96AW5;A0A1B0GVU9;H7C0R3;A0A1B0GTT3;A0A0U1RQQ5 B4DNN3 449 459 QARS Glutamine--tRNA ligase yes no 2 0.0028408 93.111 3 0.39968 0.56503 5.5371 2 Median 0.39968 0.56503 5.5371 2 0 Median NaN NaN NaN 0 0 Median 10838000 8741300 2096600 10838000 8741300 2096600 0 0 0 5721 591 5848 20768;20769;20770 31433;31434;31435 31435 2 ILQVSFK AMAIASLNGYRLGDKILQVSFKTNKSHK__ NGYRLGDKILQVSFKTNKSHK_________ K I L F K T 0 0 0 0 0 1 0 0 0 1 1 1 0 1 0 1 0 0 0 1 0 0 7 0 833.50109 Q15717 Q15717 314 320 ELAVL1 ELAV-like protein 1 yes yes 2 0.014574 94.407 4 0.31055 0.3932 5.0982 4 Median 0.31055 0.3932 5.0982 4 0 Median NaN NaN NaN 0 0 Median 37490000 28599000 8890600 37490000 28599000 8890600 0 0 0 5722 1515 5849 20771;20772;20773;20774 31436;31437;31438;31439;31440 31438 5 ILSDIGLEYCK NNLGSLRKARKTVKKILSDIGLEYCKEHIE TVKKILSDIGLEYCKEHIEDFKQFEPNDFY K I L C K E 0 0 0 1 1 0 1 1 0 2 2 1 0 0 0 1 0 0 1 0 0 0 11 0 1309.6588 Q6DHZ8;B2RBM8;Q9H2P0;E9PQK8 Q6DHZ8 22 32 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.00021472 84.213 1 2 0.83295 1.1177 30.321 2 Median 0.73039 0.90203 NaN 1 0 Median 0.9499 1.385 NaN 1 0 Median 36035000 17944000 18090000 27492000 14948000 12544000 8542400 2996300 5546000 5723 729 5850 20775;20776;20777 31441;31442;31443 31441 3 ILSFIQDQEEDYLK YLSMLEDTGFWLESKILSFIQDQEEDYLKL KILSFIQDQEEDYLKLHRVIYQQIIQTYLT K I L L K L 0 0 0 2 0 2 2 0 0 2 2 1 0 1 0 1 0 0 1 0 0 0 14 0 1739.8618 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 858 871 NCAPG2 Condensin-2 complex subunit G2 yes no 2 1.1921E-35 204.17 4 1 0.72651 0.89929 6.5197 5 Median 0.73428 0.90157 2.197 4 0 Median 0.5263 0.79089 NaN 1 0 Median 98374000 59235000 39138000 85224000 49972000 35251000 13150000 9262800 3887000 5724 1621 5851 20778;20779;20780;20781;20782 31444;31445;31446;31447;31448;31449;31450;31451;31452;31453;31454 31450 11 ILSGVVTK DKKCPFTGNVSIRGRILSGVVTKMKMQRTI NVSIRGRILSGVVTKMKMQRTIVIRRDYLH R I L T K M 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 1 1 0 0 2 0 0 8 0 815.51165 P62280;M0QZC5 P62280 72 79 RPS11 40S ribosomal protein S11 yes no 2 0.0037793 111.82 4 2 0.79084 1.048 34.61 6 Median 0.79723 1.0605 2.6816 4 0 Median 0.34555 0.54753 3.5096 2 0 Median 2141900000 1202400000 939480000 1960000000 1070700000 889240000 181930000 131690000 50243000 5725 1404 5852 20783;20784;20785;20786;20787;20788 31455;31456;31457;31458;31459;31460;31461;31462;31463;31464;31465 31456 11 ILSHLQQDSLK VLMEKPDVVVGTPSRILSHLQQDSLKLRDS TPSRILSHLQQDSLKLRDSLELLVVDEADL R I L L K L 0 0 0 1 0 2 0 0 1 1 3 1 0 0 0 2 0 0 0 0 0 0 11 0 1280.7089 Q9NY93;Q53HB9;H7C3E9;G3V0G3;F8WDT8 Q9NY93 145 155 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2;3 0.00014055 105.17 4 1 1.0702 1.3193 11.801 5 Median 1.0892 1.353 7.2103 4 0 Median 0.78714 1.0871 NaN 1 0 Median 48919000 22164000 26755000 45229000 20271000 24958000 3690100 1893300 1796700 5726 1768 5853 20789;20790;20791;20792;20793 31466;31467;31468;31469;31470;31471 31469 6 ILSHNPETQQVDIEILSSLPALR TSSYSPDVSDYKEGRILSHNPETQQVDIEI QQVDIEILSSLPALREPGKFDLVYHNENGA R I L L R E 1 1 1 1 0 2 2 0 1 3 4 0 0 0 2 3 1 0 0 1 0 0 23 0 2572.3861 P38432 P38432 500 522 COIL Coilin yes yes 3 6.9889E-06 50.202 1 0.8159 1.0988 NaN 1 Median 0.8159 1.0988 NaN 1 0 Median NaN NaN NaN 0 0 Median 3303600 2126300 1177200 3303600 2126300 1177200 0 0 0 5727 1328 5854 20794 31472 31472 1 ILSISADIETIGEILKK YNASVSVPDSSGPERILSISADIETIGEIL SISADIETIGEILKKIIPTLEEGLQLPSPT R I L K K I 1 0 0 1 0 0 2 1 0 5 2 2 0 0 0 2 1 0 0 0 0 0 17 1 1842.0714 A0A024R228;P61978;B4DUQ1;Q5T6W2 A0A024R228 87 103 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 3 1.4697E-25 164.7 4 0.51959 0.64071 42.687 3 Plateau 0.51959 0.64071 42.687 3 0 Plateau NaN NaN NaN 0 0 Median 59157000 43407000 15750000 59157000 43407000 15750000 0 0 0 5728 77 5855 20795;20796;20797;20798 31473;31474;31475;31476;31477;31478;31479 31476 7 ILSQQPVETEEVNK HVTKEGVWKNPVLLKILSQQPVETEEVNKL KILSQQPVETEEVNKLIAQEGPSFLQMRIK K I L N K L 0 0 1 0 0 2 3 0 0 1 1 1 0 0 1 1 1 0 0 2 0 0 14 0 1612.8308 Q13129 Q13129 192 205 RLF Zinc finger protein Rlf yes yes 2 0.00086191 80.834 2 1 0.64592 0.88458 7.8353 2 Median 0.65956 0.83691 NaN 1 0 Median 0.63255 0.93498 NaN 1 0 Median 13116000 7475400 5640200 7121100 4152800 2968300 5994500 3322600 2671900 5729 1463 5856 20799;20800;20801 31480;31481;31482;31483 31481 4 ILSQVSYR PIFDLVENIGRKCGRILSQVSYRLFEDMGL IGRKCGRILSQVSYRLFEDMGLFEAFKIPI R I L Y R L 0 1 0 0 0 1 0 0 0 1 1 0 0 0 0 2 0 0 1 1 0 0 8 0 964.53418 Q14432 Q14432 710 717 PDE3A cGMP-inhibited 3,5-cyclic phosphodiesterase A yes yes 2 0.034745 51.854 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5730 1487 5857 20802 31484 31484 1 ILSSDDYGK WEMAEEEGWIREKEKILSSDDYGKDLTSVM IREKEKILSSDDYGKDLTSVMRLLSKHRAF K I L G K D 0 0 0 2 0 0 0 1 0 1 1 1 0 0 0 2 0 0 1 0 0 0 9 0 996.47639 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;F8W6C1 B2ZZ89 660 668 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.0056327 71.379 1 0.72289 0.91923 NaN 1 Median 0.72289 0.91923 NaN 1 0 Median NaN NaN NaN 0 0 Median 12928000 6944700 5983200 12928000 6944700 5983200 0 0 0 5731 346 5858 20803 31485;31486 31485 2 ILSVQGTEPLVLFK LDKVFKATLSAEVYRILSVQGTEPLVLFKE RILSVQGTEPLVLFKEGAVRGLEALLADPQ R I L F K E 0 0 0 0 0 1 1 1 0 1 3 1 0 1 1 1 1 0 0 2 0 0 14 0 1542.9021 Q9H8H0;J3QLQ6 Q9H8H0 112 125 NOL11 Nucleolar protein 11 yes no 2 1.4541E-35 162.36 4 2 0.8724 1.1173 3.8091 6 Median 0.89662 1.1849 2.6145 4 0 Linear 0.67639 1.0758 3.2667 2 0 Median 340850000 193430000 147430000 187430000 99439000 87992000 153420000 93987000 59435000 5732 1743 5859 20804;20805;20806;20807;20808;20809 31487;31488;31489;31490;31491;31492;31493;31494;31495;31496;31497;31498 31493 12 ILSYNR QLKELTAPDENIPAKILSYNRANRAVAILC APDENIPAKILSYNRANRAVAILCNHQRAP K I L N R A 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 6 0 764.41809 P11387;B9EG90;Q9BVT2;B7Z9E8;B4DYD2;E5KMK7;E5KMK6;E5KMK5;Q969P6;B4E061 P11387 616 621 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 2 0.0084619 143.48 2 0.66715 0.90988 NaN 1 Median 0.66715 0.90988 NaN 1 0 Median NaN NaN NaN 0 0 Median 120470000 105280000 15191000 120470000 105280000 15191000 0 0 0 5733 1255 5860 20810;20811 31499;31500 31500 2 ILTATVDNANILLQIDNAR DYSQYYRTIEELQNKILTATVDNANILLQI TVDNANILLQIDNARLAADDFRTKFETEQA K I L A R L 3 1 3 2 0 1 0 0 0 3 3 0 0 0 0 0 2 0 0 1 0 0 19 0 2067.1324 CON__Q04695;Q04695;F5GWP8;K7EPJ9;B4E2P9 CON__Q04695 145 163 KRT17 Keratin, type I cytoskeletal 17 yes no 2 1.2628E-09 86.467 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3270900 3270900 0 3270900 3270900 0 0 0 0 + 5734 965 5861 20812 31501;31502 31501 2 ILTATVDNANVLLQIDNAR DYSPYFKTIEDLRNKILTATVDNANVLLQI TVDNANVLLQIDNARLAADDFRTKYETELN K I L A R L 3 1 3 2 0 1 0 0 0 2 3 0 0 0 0 0 2 0 0 2 0 0 19 0 2053.1168 CON__P02533;P02533 CON__P02533 176 194 KRT14 Keratin, type I cytoskeletal 14 yes no 2 2.5304E-28 159.12 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76865000 76865000 0 15240000 15240000 0 61625000 61625000 0 + 5735 949 5862 20813;20814;20815;20816 31503;31504;31505;31506 31504 4 ILTDEMLLQACEGR ESCSDDDNQGSKSPKILTDEMLLQACEGRT KILTDEMLLQACEGRTAHKAARLGITMKAK K I L G R T 1 1 0 1 1 1 2 1 0 1 3 0 1 0 0 0 1 0 0 0 0 0 14 0 1647.796 Q5T3I0;A8KAG1;A0A0A0MRK1;E9PAV9;F8W895 Q5T3I0 142 155 GPATCH4 G patch domain-containing protein 4 yes no 2 1.2335E-05 114.76 3 4 0.75632 1.0459 36.417 5 Median 1.3857 1.9514 NaN 1 0 Median 0.66396 0.91787 17.193 4 0 Median 41023000 23580000 17442000 3247600 1528200 1719400 37775000 22052000 15723000 5736 1568 5863;5864 20817;20818;20819;20820;20821;20822;20823 31507;31508;31509;31510;31511;31512;31513;31514;31515;31516;31517 31516 713 11 ILTFDQLALDSPK VTSRARSRILRAGGKILTFDQLALDSPKGC GKILTFDQLALDSPKGCGTVLLSGPRKGRE K I L P K G 1 0 0 2 0 1 0 0 0 1 3 1 0 1 1 1 1 0 0 0 0 0 13 0 1459.7922 Q0QEW2;G3V203;H0YHA7;A0A024QZD1;J3QQ67;Q07020;F8VUA6 Q0QEW2 97 109 RPL18 60S ribosomal protein L18 yes no 2 1.4909E-55 205.53 12 2 0.72409 0.97889 11.163 7 Median 0.73636 0.97027 9.2011 5 0 Median 0.6976 1.1037 2.5247 2 0 Median 2584100000 1402800000 1181300000 2341800000 1262500000 1079400000 242270000 140290000 101980000 5737 9 5865 20824;20825;20826;20827;20828;20829;20830;20831;20832;20833;20834;20835;20836;20837 31518;31519;31520;31521;31522;31523;31524;31525;31526;31527;31528;31529;31530;31531;31532;31533;31534;31535;31536;31537;31538;31539;31540;31541;31542;31543;31544 31529 26 ILTGHTQSVTCLR GSVRIWDTTAGRCERILTGHTQSVTCLRWG ERILTGHTQSVTCLRWGGDGLLYSASQDRT R I L L R W 0 1 0 0 1 1 0 1 1 1 2 0 0 0 0 1 3 0 0 1 0 0 13 0 1484.7769 B4E074;Q9NVX2;B4E303;A0A0A0MRH0;K7EN33 B4E074 217 229 NLE1 Notchless protein homolog 1 yes no 3 0.024492 47.189 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5738 883 5866 20838 31545 31545 1 ILTGTDAPK MSDLPVKVIHVESGKILTGTDAPKAGQLEA HVESGKILTGTDAPKAGQLEAWLEMNPGYE K I L P K A 1 0 0 1 0 0 0 1 0 1 1 1 0 0 1 0 2 0 0 0 0 0 9 0 914.5073 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;Q59FZ6 A7E2E1 627 635 SMARCA4 Transcription activator BRG1 yes no 2 0.014354 56.81 1 1 0.89882 1.211 59.199 2 Median 0.66075 0.79683 NaN 1 0 Median 1.2227 1.8406 NaN 1 0 Median 43867000 24800000 19067000 25687000 16394000 9293000 18181000 8406100 9774500 5739 403 5867 20839;20840 31546;31547 31547 2 ILTITVSR IVWAKIYGFPWWPARILTITVSRKDNGLLV FPWWPARILTITVSRKDNGLLVRQEARISW R I L S R K 0 1 0 0 0 0 0 0 0 2 1 0 0 0 0 1 2 0 0 1 0 0 8 0 901.55967 Q96N64 Q96N64 673 680 PWWP2A PWWP domain-containing protein 2A yes yes 2 0.029195 82.671 1 0.51961 0.69487 NaN 1 Median 0.51961 0.69487 NaN 1 0 Median NaN NaN NaN 0 0 Median 3289600 2151900 1137700 3289600 2151900 1137700 0 0 0 5740 1695 5868 20841 31548 31548 1 ILTPIIFK RDRMIQVYFPKEGRKILTPIIFKEENLRTM FPKEGRKILTPIIFKEENLRTMYSQDRHVD K I L F K E 0 0 0 0 0 0 0 0 0 3 1 1 0 1 1 0 1 0 0 0 0 0 8 0 943.61064 Q59GX8;G5E9W7;G5E9V5;P82650;H7C5L9;Q8NBL6 Q59GX8 39 46 MRPS22 28S ribosomal protein S22, mitochondrial yes no 2 0.035281 54.157 1 0.50301 0.66213 NaN 1 Median 0.50301 0.66213 NaN 1 0 Median NaN NaN NaN 0 0 Median 5288600 3589500 1699000 5288600 3589500 1699000 0 0 0 5741 1082 5869 20842 31549 31549 1 ILTTIEDLDQK DLMKKKRIVENDKSKILTTIEDLDQKKNQA DKSKILTTIEDLDQKKNQALNIAWQKVNKD K I L Q K K 0 0 0 2 0 1 1 0 0 2 2 1 0 0 0 0 2 0 0 0 0 0 11 0 1287.6922 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27;A0A0C4DGE5 A0A024R158 1015 1025 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 1.6895E-15 170.5 4 3 0.71874 0.90039 2.8224 3 Median 0.71874 0.90039 2.8224 3 0 Median NaN NaN NaN 0 0 Median 182990000 93954000 89038000 156740000 93954000 62788000 26250000 0 26250000 5742 50 5870 20843;20844;20845;20846;20847;20848;20849 31550;31551;31552;31553;31554;31555;31556;31557;31558;31559 31552 10 ILTTIEDLDQKK DLMKKKRIVENDKSKILTTIEDLDQKKNQA KSKILTTIEDLDQKKNQALNIAWQKVNKDF K I L K K N 0 0 0 2 0 1 1 0 0 2 2 2 0 0 0 0 2 0 0 0 0 0 12 1 1415.7872 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27;A0A0C4DGE5 A0A024R158 1015 1026 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2;3 0.0028483 66.19 3 3 0.68393 0.90567 8.6504 5 Median 0.73722 0.90567 4.4998 3 0 Plateau 0.63296 1.0188 1.6295 2 0 Median 296000000 176050000 119950000 202790000 121050000 81744000 93209000 55006000 38203000 5743 50 5871 20850;20851;20852;20853;20854;20855 31560;31561;31562;31563;31564;31565;31566 31565 7 ILVATNLFGR ERLSRYQQFKDFQRRILVATNLFGRGMDIE DFQRRILVATNLFGRGMDIERVNIVFNYDM R I L G R G 1 1 1 0 0 0 0 1 0 1 2 0 0 1 0 0 1 0 0 1 0 0 10 0 1102.6499 A0A024RCM3;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;B4DP52;Q69YT6;H0Y400;O00148;B4DX78 O00148 339 348 hCG_2005638;DDX39B;DKFZp547B159;DDX39A Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A no no 2 1.4829E-08 157.33 5 1 0.373 0.49682 86.602 5 Median 0.36095 0.48061 6.7172 4 0 Median 2.0568 3.2938 NaN 1 0 Median 106760000 66315000 40441000 72248000 53622000 18626000 34508000 12693000 21815000 5744 1164;296 5872 20856;20857;20858;20859;20860;20861 31567;31568;31569;31570;31571;31572;31573;31574;31575;31576 31569 10 ILVAVVK EKQTRTASDMVSTSRILVAVVKMCYEAKEW SDMVSTSRILVAVVKMCYEAKEWDLLNENI R I L V K M 1 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 3 0 0 7 0 740.51601 A0A0S2Z489;O00232;A0A0S2Z476 A0A0S2Z489 66 72 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 2 0.04252 53.71 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5745 461 5873 20862 31577 31577 1 ILVVGAHGSLEAALQCLFQR ELLEKSVGVNLDGKKILVVGAHGSLEAALQ AHGSLEAALQCLFQRKGSMTMSIQWKTRQL K I L Q R K 3 1 0 0 1 2 1 2 1 1 4 0 0 1 0 1 0 0 0 2 0 0 20 0 2181.1728 A0A087WVM4;B7ZM99;Q6UB35;H0Y327 A0A087WVM4 158 177 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 3 4.7022E-17 138.55 2 0.49222 0.66755 77.585 2 Median 0.49222 0.66755 77.585 2 0 Median NaN NaN NaN 0 0 Median 2954800 2242400 712340 2954800 2242400 712340 0 0 0 5746 348 5874 20863;20864 31578;31579 31578 2 ILYNPLQGQK GSSLKRLPVFGMEPRILYNPLQGQKCIVQT GMEPRILYNPLQGQKCIVQTTSWSQCSKTC R I L Q K C 0 0 1 0 0 2 0 1 0 1 2 1 0 0 1 0 0 0 1 0 0 0 10 0 1172.6554 Q6FI18;O00622;B4DI61;Q53FA4 Q6FI18 219 228 CYR61 Protein CYR61 yes no 2 0.0042189 77.058 3 2 1.7879 2.2658 4.2216 3 Median 1.7879 2.2658 4.2216 3 0 Median NaN NaN NaN 0 0 Median 66704000 17400000 49305000 45498000 17400000 28098000 21207000 0 21207000 5747 1168 5875 20865;20866;20867;20868;20869 31580;31581;31582;31583;31584;31585 31583 6 IMATPEQVGK LPFADDKRKMPFTEKIMATPEQVGKMKAIV PFTEKIMATPEQVGKMKAIVEKLRFTYRSD K I M G K M 1 0 0 0 0 1 1 1 0 1 0 1 1 0 1 0 1 0 0 1 0 0 10 0 1072.5587 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356;Q6IC76 A0A024R1N4 452 461 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 2 0.0003829 81.915 1 2 0.56631 0.85402 20.865 3 Median 0.92585 1.1689 NaN 1 0 Median 0.54196 0.82002 5.7456 2 0 Median 46438000 28762000 17676000 9738700 4979500 4759300 36700000 23783000 12917000 5748 62 5876;5877 20870;20871;20872 31586;31587;31588;31589 31588 35 4 IMIMTDQDQDGSHIK NYEDEDSLKTLRYGKIMIMTDQDQDGSHIK IMIMTDQDQDGSHIKGLLINFIHHNWPSLL K I M I K G 0 0 0 3 0 2 0 1 1 3 0 1 2 0 0 1 1 0 0 0 0 0 15 0 1730.7968 P11388;Q71UH4;Q02880;B4DKD0;E9PCY5 P11388 536 550 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 3 0.048427 41.743 1 0.45795 0.71651 NaN 1 Median NaN NaN NaN 0 0 Median 0.45795 0.71651 NaN 1 0 Median 35635000 24255000 11380000 0 0 0 35635000 24255000 11380000 5749 1256;1437 5878 20873 31590 31590 0 IMLFTNEDNPHGNDSAK ANLFSDVQFKMSHKRIMLFTNEDNPHGNDS LFTNEDNPHGNDSAKASRARTKAGDLRDTG R I M A K A 1 0 3 2 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 17 0 1901.8578 A0A024R1N4;P12956;B1AHC9;B4DE32;B4E356 A0A024R1N4 166 182 XRCC6 X-ray repair cross-complementing protein 6 yes no 3 8.8584E-08 77.39 2 1 0.51104 0.72602 11.479 2 Median 0.59798 0.78741 NaN 1 0 Median 0.43674 0.66942 NaN 1 0 Median 32620000 24345000 8274100 5826800 5046200 780590 26793000 19299000 7493500 5750 62 5879;5880 20874;20875;20876 31591;31592;31593;31594 31592 36 4 IMNTFSVVPSPK GTLLISKIREEYPDRIMNTFSVVPSPKVSD PDRIMNTFSVVPSPKVSDTVVEPYNATLSV R I M P K V 0 0 1 0 0 0 0 0 0 1 0 1 1 1 2 2 1 0 0 2 0 0 12 0 1318.6955 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;Q1KSF8;G3V2A3;Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;M0R2D3;M0R042;M0QYM7;P04350;B4DE77;Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q53G92;Q3ZCR3 Q5JP53 145 156 TUBB;XTP3TPATP1;TUBB3;TUBB2C;TUBB4B;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain no no 2 2.403E-05 97.214 7 4 0.37252 0.47257 98.103 6 Median 0.37142 0.4706 8.3687 5 0 Median 3.2718 5.2784 NaN 1 0 Median 194590000 50029000 144560000 49868000 31062000 18806000 144720000 18967000 125760000 5751 1241;1423;1230;416 5881;5882 20877;20878;20879;20880;20881;20882;20883;20884;20885;20886;20887 31595;31596;31597;31598;31599;31600;31601;31602;31603;31604;31605;31606;31607;31608;31609 31597 135 15 IMPEDIIINCSK RGRGNHPKMGMLKRRIMPEDIIINCSKDAK KRRIMPEDIIINCSKDAKVPSPPPGHKWKE R I M S K D 0 0 1 1 1 0 1 0 0 4 0 1 1 0 1 1 0 0 0 0 0 0 12 0 1431.7102 P11387;B9EG90 P11387 377 388 TOP1 DNA topoisomerase 1 yes no 2 0.0016891 78.653 5 1 0.76793 0.96342 11.72 5 Median 0.76804 0.95736 10.32 4 0 Median 0.74545 1.183 NaN 1 0 Median 108580000 68335000 40244000 79063000 52095000 26968000 29516000 16240000 13276000 5752 1255 5883;5884 20888;20889;20890;20891;20892;20893 31610;31611;31612;31613;31614;31615;31616;31617 31615 501 8 IMSSPLSK NRKRHFNAPSHVRRKIMSSPLSKELRQKYN PSHVRRKIMSSPLSKELRQKYNVRSMPIRK K I M S K E 0 0 0 0 0 0 0 0 0 1 1 1 1 0 1 3 0 0 0 0 0 0 8 0 861.46299 Q9UNX3;E5RIT6;E5RHH1;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;Q6IBH6;P61254;J3KTJ8;J3KSS0 Q9UNX3 29 36 RPL26L1;RPL26 60S ribosomal protein L26-like 1;60S ribosomal protein L26 no no 2 0.0098349 72.789 3 1 0.79385 0.99921 43.058 4 Median 0.82978 1.057 7.8245 3 0 Median 0.28728 0.43999 NaN 1 0 Median 85208000 51134000 34074000 64163000 34748000 29416000 21045000 16386000 4658500 5753 1797;1142 5885;5886 20894;20895;20896;20897 31618;31619;31620;31621;31622 31621 407 5 INAVVETGR KQEDFMTTMDANEEKINAVVETGRRLVSDG DANEEKINAVVETGRRLVSDGNINSDRIQE K I N G R R 1 1 1 0 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 2 0 0 9 0 957.52434 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24 B2ZZ89 1225 1233 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.0072223 67.897 1 0.8576 1.1447 NaN 1 Median 0.8576 1.1447 NaN 1 0 Median NaN NaN NaN 0 0 Median 7251200 3526300 3724900 7251200 3526300 3724900 0 0 0 5754 346 5887 20898 31623 31623 1 INAVVETGRR KQEDFMTTMDANEEKINAVVETGRRLVSDG ANEEKINAVVETGRRLVSDGNINSDRIQEK K I N R R L 1 2 1 0 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 2 0 0 10 1 1113.6255 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24 B2ZZ89 1225 1234 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 0.013482 83.647 2 0.63756 0.87941 10.962 2 Median 0.63756 0.87941 10.962 2 0 Median NaN NaN NaN 0 0 Median 12618000 7559100 5058700 12618000 7559100 5058700 0 0 0 5755 346 5888 20899;20900 31624;31625 31624 1 INDALSCEYECR LKMDLNSEQAEQLERINDALSCEYECRRRM LERINDALSCEYECRRRMLMKRLDVTVQSF R I N C R R 1 1 1 1 2 0 2 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 12 0 1528.6286 Q52LJ0 Q52LJ0 210 221 FAM98B Protein FAM98B yes yes 2 1.8812E-07 129.89 7 0.71621 0.954 12.887 3 Plateau 0.71621 0.954 12.887 3 0 Plateau NaN NaN NaN 0 0 Median 14583000 7576700 7006700 14583000 7576700 7006700 0 0 0 5756 1537 5889 20901;20902;20903;20904;20905;20906;20907 31626;31627;31628;31629;31630;31631;31632;31633;31634;31635 31634 10 INDRFEFPEQLPLDEFLQK LKRFMYDPQTDQNIKINDRFEFPEQLPLDE FEFPEQLPLDEFLQKTDPKDPANYILHAVL K I N Q K T 0 1 1 2 0 2 3 0 0 1 3 1 0 3 2 0 0 0 0 0 0 0 19 1 2377.1954 Q6U8A4;Q93009;B7ZAX6;B7Z855;H3BND8;B7Z7T5;F5H2X1;B7Z842 Q6U8A4 431 449 USP7 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 7 yes no 3 8.5136E-06 71.969 4 0.48849 0.636 2.2974 4 Median 0.48849 0.636 2.2974 4 0 Median NaN NaN NaN 0 0 Median 61752000 41950000 19802000 61752000 41950000 19802000 0 0 0 5757 1600 5890 20908;20909;20910;20911 31636;31637;31638;31639 31638 4 INDYDNQCDVVYISQPITECHFENQK SIKTARKSKRASGLRINDYDNQCDVVYISQ YISQPITECHFENQKSILSSRKTARKSTRG R I N Q K S 0 0 3 3 2 3 2 0 1 3 0 1 0 1 1 1 1 0 2 2 0 0 26 0 3228.4128 A0A1B0GUH9;A0A1P0AZG4 A0A1B0GUH9 435 460 yes no 3 0.041706 11.632 1 0.95022 1.2417 NaN 1 Median 0.95022 1.2417 NaN 1 0 Median NaN NaN NaN 0 0 Median 5039400 2371500 2668000 5039400 2371500 2668000 0 0 0 5758 517 5891 20912 31640 31640 1 INEAIVAVQAIIADPK LRLLHIEELRELQTKINEAIVAVQAIIADP NEAIVAVQAIIADPKTDHRLGKVGR_____ K I N P K T 4 0 1 1 0 1 1 0 0 4 0 1 0 0 1 0 0 0 0 2 0 0 16 0 1663.9509 Q5RLJ0;Q549M8;Q9Y224 Q5RLJ0 219 234 C14orf166 UPF0568 protein C14orf166 yes no 2 4.549E-25 132.08 4 2 0.75771 0.9486 15.377 6 Median 0.73875 0.93022 2.4532 4 0 Median 0.84181 1.2549 2.2954 2 0 Median 78749000 45058000 33690000 62449000 35986000 26463000 16300000 9072600 7227300 5759 1544 5892 20913;20914;20915;20916;20917;20918 31641;31642;31643;31644;31645;31646;31647;31648;31649 31645 9 INEILSNALK MENMGRFGSGMNMGRINEILSNALKRGEII MNMGRINEILSNALKRGEIIAKQGGGGGGG R I N L K R 1 0 2 0 0 0 1 0 0 2 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1113.6394 P52272;A0A087X0X3;Q59ES8;Q7KYM9;M0R019;B4DEG4 P52272 372 381 HNRNPM;ORF Heterogeneous nuclear ribonucleoprotein M yes no 2 3.9485E-11 136.21 3 2 0.40437 0.5155 109.65 5 Median 0.35334 0.44347 10.656 3 0 Median 2.2229 3.3719 3.5605 2 0 Median 139490000 83229000 56263000 96683000 70443000 26240000 42809000 12786000 30023000 5760 1363 5893 20919;20920;20921;20922;20923 31650;31651;31652;31653;31654;31655;31656 31653 7 INELTGIK QIKQVEDDIQQLLKKINELTGIKESDTGLA IQQLLKKINELTGIKESDTGLAPPALWDLA K I N I K E 0 0 1 0 0 0 1 1 0 2 1 1 0 0 0 0 1 0 0 0 0 0 8 0 886.51238 A0A140VK70;P35998;Q75L23;C9JLS9;B7Z571 A0A140VK70 59 66 PSMC2 26S protease regulatory subunit 7 yes no 2 0.041162 45.7 1 0.41951 0.53068 NaN 1 Median 0.41951 0.53068 NaN 1 0 Median NaN NaN NaN 0 0 Median 8125900 4926800 3199100 8125900 4926800 3199100 0 0 0 5761 510 5894 20924 31657 31657 1 INEVQTDVGVDTK PAPLTAAEEELRQIKINEVQTDVGVDTKHQ IKINEVQTDVGVDTKHQTLQGVAFPISREA K I N T K H 0 0 1 2 0 1 1 1 0 1 0 1 0 0 0 0 2 0 0 3 0 0 13 0 1416.7096 F8VS81;Q12792 F8VS81 197 209 TWF1 Twinfilin-1 yes no 2 0.0055221 98.156 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5762 1061 5895 20925 31658 31658 1 INFDVNGYIVGANIETYLLEK TVKNDNSSRFGKFIRINFDVNGYIVGANIE GYIVGANIETYLLEKSRAIRQAKEERTFHI R I N E K S 1 0 3 1 0 0 2 2 0 3 2 1 0 1 0 0 1 0 2 2 0 0 21 0 2384.2264 A0A024R1N1;P35579;Q86XU5;B4E3S1 A0A024R1N1 241 261 MYH9 Myosin-9 yes no 2 2.1161E-24 116.04 1 0.70275 0.89584 NaN 1 Median 0.70275 0.89584 NaN 1 0 Median NaN NaN NaN 0 0 Median 15842000 10178000 5663500 15842000 10178000 5663500 0 0 0 5763 61 5896 20926 31659 31659 0 INFLSNNQCENIR PLSVLCCNLPEAKRRINFLSNNQCENIRRL RRINFLSNNQCENIRRLPSFRRYVEKQASE R I N I R R 0 1 4 0 1 1 1 0 0 2 1 0 0 1 0 1 0 0 0 0 0 0 13 0 1620.7678 B4E014;Q9UBD5;Q6IBJ0;B4DZ51;B7Z8A5;B7ZAI3 B4E014 293 305 ORC3;ORC3L Origin recognition complex subunit 3 yes no 2 0.019681 49.35 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5764 882 5897 20927 31660 31660 1 INFYCPGSALGR KNISMSVEGDYTYLRINFYCPGSALGRNEG YLRINFYCPGSALGRNEGNIFPNPEATFVK R I N G R N 1 1 1 0 1 0 0 2 0 1 1 0 0 1 1 1 0 0 1 0 0 0 12 0 1353.65 Q9Y5B9 Q9Y5B9 570 581 SUPT16H FACT complex subunit SPT16 yes yes 2 2.9833E-36 175.93 5 2 0.72792 1.0146 3.4854 5 Median 0.72968 1.0146 4.7393 3 0 Median 0.63295 1.0229 1.7609 2 0 Median 444750000 247000000 197740000 333720000 178320000 155410000 111020000 68685000 42338000 5765 1829 5898 20928;20929;20930;20931;20932;20933;20934 31661;31662;31663;31664;31665;31666;31667;31668;31669;31670 31666 10 INGGGGGSVPGIER MENMGRFGSGMNMGRINGGGGGSVPGIERM RINGGGGGSVPGIERMGPGIDRLGGAGMER R I N E R M 0 1 1 0 0 0 1 6 0 2 0 0 0 0 1 1 0 0 0 1 0 0 14 0 1268.6473 M0QZM1 M0QZM1 158 171 HNRNPM yes yes 2 5.6124E-05 75.479 2 0.46824 0.63247 NaN 1 Median 0.46824 0.63247 NaN 1 0 Median NaN NaN NaN 0 0 Median 6550200 5372200 1178000 6550200 5372200 1178000 0 0 0 5766 1160 5899 20935;20936 31671;31672;31673 31672 3 INISEGNCPER KGESVKKMREESGARINISEGNCPERIITL SGARINISEGNCPERIITLAGPTNAIFKAF R I N E R I 0 1 2 0 1 0 2 1 0 2 0 0 0 0 1 1 0 0 0 0 0 0 11 0 1287.5877 Q15366;B4DLC0;F8W0G4;F8VXH9;F8W1G6;J3QT27;Q5MJP6;E9PFP8;P57721;F8VTZ0;H3BRU6;F8VZX2;B4DRD7;Q53SS8;Q15365 Q53SS8 47 57 PCBP2;PCBP3;PCBP1 Poly(rC)-binding protein 2;Poly(rC)-binding protein 3;Poly(rC)-binding protein 1 no no 2 1.2958E-10 172.59 6 2 0.31914 0.43704 143.39 5 Median 0.31222 0.43054 6.8567 3 0 Plateau 3.5978 5.6246 0.63092 2 0 Median 215870000 133680000 82195000 162150000 122820000 39326000 53724000 10855000 42868000 5767 1510;1064;1509 5900 20937;20938;20939;20940;20941;20942;20943;20944 31674;31675;31676;31677;31678;31679;31680;31681;31682;31683;31684 31676 11 INISQVIAVVGQQNVEGK NNFKSMVVSGAKGSKINISQVIAVVGQQNV SQVIAVVGQQNVEGKRIPFGFKHRTLPHFI K I N G K R 1 0 2 0 0 3 1 2 0 3 0 1 0 0 0 1 0 0 0 4 0 0 18 0 1895.0476 P24928;A0A087WWE2 P24928 779 796 POLR2A DNA-directed RNA polymerase II subunit RPB1;DNA-directed RNA polymerase yes no 2 1.9658E-06 101.72 3 1.016 1.3383 7.4828 3 Median 1.016 1.3383 7.4828 3 0 Median NaN NaN NaN 0 0 Median 10552000 5322400 5229600 10552000 5322400 5229600 0 0 0 5768 1295 5901 20945;20946;20947 31685;31686;31687;31688;31689 31686 5 INLAVANTGILVFQGFTK YGIRLHPAKDREGTKINLAVANTGILVFQG AVANTGILVFQGFTKINAFNWAKVRKLSFK K I N T K I 2 0 2 0 0 1 0 2 0 2 2 1 0 2 0 0 2 0 0 2 0 0 18 0 1905.0724 C9JME2;Q9Y4F1;M0R262;A0A1B0GV68 C9JME2 240 257 FARP1 FERM, RhoGEF and pleckstrin domain-containing protein 1 yes no 2 0.013541 43.991 1 1.0835 1.4379 NaN 1 Median 1.0835 1.4379 NaN 1 0 Median NaN NaN NaN 0 0 Median 799010 353320 445690 799010 353320 445690 0 0 0 5769 941 5902 20948 31690 31690 0 INLELR ______________________________ ______________________________ K I N L R N 0 1 1 0 0 0 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 6 0 756.44939 Q53F20;Q9BTT0;E9PPH5;Q5TB19;B4E0D5;E9PLC4;E9PI45;Q5TB25 Q53F20 7 12 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 2 0.035937 103.29 1 2 2.4061 3.7014 104.45 3 Plateau 0.43345 0.58495 NaN 1 0 Median 2.3371 3.5671 5.2248 2 0 Median 54362000 21809000 32554000 17335000 11056000 6278600 37027000 10752000 26275000 5770 1538 5903 20949;20950;20951 31691;31692;31693 31693 3 INLGGSQAAGYLQR LPILEGRLDAKNCKRINLGGSQAAGYLQRL RINLGGSQAAGYLQRLLQLKYPGHLAAITL R I N Q R L 2 1 1 0 0 2 0 3 0 1 2 0 0 0 0 1 0 0 1 0 0 0 14 0 1446.7579 Q9H9F9 Q9H9F9 211 224 ACTR5 Actin-related protein 5 yes yes 2 0.00058873 57.836 3 0.88172 1.1903 NaN 1 Median NaN NaN NaN 0 0 Median 0.88172 1.1903 NaN 1 0 Median 5592000 3205400 2386600 0 0 0 5592000 3205400 2386600 5771 1745 5904 20952;20953;20954 31694;31695;31696;31697;31698 31694 5 INLIAPPR LRAGLNCSTENMPIKINLIAPPRYVMTTTT TENMPIKINLIAPPRYVMTTTTLERTEGLS K I N P R Y 1 1 1 0 0 0 0 0 0 2 1 0 0 0 2 0 0 0 0 0 0 0 8 0 892.54944 Q53XC0;P05198;H0YJS4;G3V4T5 Q53XC0 227 234 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 2 0.02369 86.866 2 2 1.2822 1.6372 33.949 3 Median 0.68122 0.93729 NaN 1 0 Median 1.285 1.6841 3.9919 2 0 Median 24828000 16395000 8432500 14658000 12608000 2050000 10170000 3787100 6382500 5772 1235 5905 20955;20956;20957;20958 31699;31700;31701;31702;31703 31700 5 INLVLSR TWFSIPEKNRPLKGRINLVLSRELKEPPQG KNRPLKGRINLVLSRELKEPPQGAHFLSRS R I N S R E 0 1 1 0 0 0 0 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 7 0 813.50724 B4DM58;B0YJ76;A0A024RAQ3;P00374;C9JJ68;B3KV46;Q86XF0 B4DM58 72 78 DHFR;DYR;DHFRL1 Dihydrofolate reductase;Dihydrofolate reductase, mitochondrial yes no 2 0.046485 82.305 1 0.27562 0.38655 NaN 1 Median 0.27562 0.38655 NaN 1 0 Median NaN NaN NaN 0 0 Median 2004800 1678300 326420 2004800 1678300 326420 0 0 0 5773 247 5906 20959 31704 31704 1 INNAAFEAVVVTNTIPQEDK AILTHGIFSGPAISRINNAAFEAVVVTNTI FEAVVVTNTIPQEDKMKHCTKIQVIDISMI R I N D K M 3 0 3 1 0 1 2 0 0 2 0 1 0 1 1 0 2 0 0 3 0 0 20 0 2172.1063 B2R860;A0A140VK41;P11908;H7C540 B2R860 261 280 PRPS2 Ribose-phosphate pyrophosphokinase 2 yes no 2 0.00017121 85.28 2 0.53058 0.68594 16.132 2 Median 0.53058 0.68594 16.132 2 0 Median NaN NaN NaN 0 0 Median 6374100 3677400 2696700 6374100 3677400 2696700 0 0 0 5774 506 5907 20960;20961 31705;31706;31707 31705 3 INNACFEAVVVTNTIPQEDK AILTHGIFSGPAISRINNACFEAVVVTNTI FEAVVVTNTIPQEDKMKHCSKIQVIDISMI R I N D K M 2 0 3 1 1 1 2 0 0 2 0 1 0 1 1 0 2 0 0 3 0 0 20 0 2261.0998 Q53FW2;P60891;B1ALA9;B7ZB02 Q53FW2 261 280 PRPS1 Ribose-phosphate pyrophosphokinase 1 yes no 2 0.00010889 97.273 3 0.53477 0.67395 7.1247 2 Median 0.53477 0.67395 7.1247 2 0 Median NaN NaN NaN 0 0 Median 5581500 3625800 1955800 5581500 3625800 1955800 0 0 0 5775 1390 5908 20962;20963;20964 31708;31709;31710 31708 3 INNINILVCTPGR GLIIGGKDLKHEAERINNINILVCTPGRLL ERINNINILVCTPGRLLQHMDETVSFHATD R I N G R L 0 1 3 0 1 0 0 1 0 3 1 0 0 0 1 0 1 0 0 1 0 0 13 0 1482.7977 Q13206;Q86VR6;E9PIF2;Q59EC7 Q13206 188 200 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 2 0.0061202 53.528 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2539400 0 2539400 2539400 0 2539400 0 0 0 5776 1466 5909 20965 31711 31711 1 INPYMSSPCHIEMILTEK KAPKMRRRTYRAHGRINPYMSSPCHIEMIL YMSSPCHIEMILTEKEQIVPKPEEEVAQKK R I N E K E 0 0 1 0 1 0 2 0 1 3 1 1 2 0 2 2 1 0 1 0 0 0 18 0 2162.021 A0A087WXM6;J3QQT2;J3KRX5;A0A024R261;A0A0A6YYL6;P18621;J3QLC8;A0A0A0MRF8 A0A087WXM6 136 153 RPL17;hCG_24487;RPL17-C18orf32 60S ribosomal protein L17 yes no 3 1.2813E-15 133.9 5 0.89818 1.1638 14.443 4 Median 0.89818 1.1638 14.443 4 0 Median NaN NaN NaN 0 0 Median 27687000 13539000 14148000 27687000 13539000 14148000 0 0 0 5777 81 5910;5911 20966;20967;20968;20969;20970 31712;31713;31714;31715;31716;31717;31718 31717 45;46 7 INQLSEENGDLSFK QCQDLKTEKSQMDRKINQLSEENGDLSFKL KINQLSEENGDLSFKLREFASHLQQLQDAL K I N F K L 0 0 2 1 0 1 2 1 0 1 2 1 0 1 0 2 0 0 0 0 0 0 14 0 1592.7682 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 313 326 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 2.2376E-41 218.07 5 2 0.30762 0.46782 34.923 3 Median 0.60719 0.78852 NaN 1 0 Median 0.28869 0.43603 9.9549 2 0 Median 41619000 32669000 8949700 16776000 13403000 3373100 24843000 19266000 5576600 5778 148;1499;590 5912 20971;20972;20973;20974;20975;20976;20977 31719;31720;31721;31722;31723;31724;31725;31726;31727;31728 31720 10 INQQENSLTLEK KNTSQETMLRDLQEKINQQENSLTLEKLKL QEKINQQENSLTLEKLKLAVADLEKQRDCS K I N E K L 0 0 2 0 0 2 2 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 12 0 1415.7256 P49454 P49454 544 555 CENPF Centromere protein F yes yes 2 4.124E-25 201.61 4 1 0.89258 1.1349 13.44 4 Median 0.86765 1.1041 7.5712 3 0 Median 0.9668 1.3833 NaN 1 0 Median 26823000 13326000 13497000 20494000 10354000 10140000 6329400 2972500 3356900 5779 1351 5913 20978;20979;20980;20981;20982 31729;31730;31731;31732;31733;31734;31735;31736 31730 8 INSAPQQIEVFPPFR QTSLTASVTNKAGQRINSAPQQIEVFPPFR INSAPQQIEVFPPFRLMPRKVTLLIGATMQ R I N F R L 1 1 1 0 0 2 1 0 0 2 0 0 0 2 3 1 0 0 0 1 0 0 15 0 1741.9152 Q8TEM1 Q8TEM1 1068 1082 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.00012472 79.492 3 0.67873 0.91671 NaN 1 Median 0.67873 0.91671 NaN 1 0 Median NaN NaN NaN 0 0 Median 10220000 7467000 2753500 10220000 7467000 2753500 0 0 0 5780 1661 5914 20983;20984;20985 31737;31738;31739;31740 31739 4 INVNEIFYDLVR QWCNCALLESSAKSKINVNEIFYDLVRQIN KSKINVNEIFYDLVRQINRKTPVEKKKPKK K I N V R Q 0 1 2 1 0 0 1 0 0 2 1 0 0 1 0 0 0 0 1 2 0 0 12 0 1493.7878 Q5U0C3;A8KAH9;A0A024RB87;P62834;P61224;B7ZAY2;A0A0J9YXB3;A6NIZ1;F5H823;B7ZB78;F5GZG1 Q5U0C3 152 163 RAP1A;RAP1B Ras-related protein Rap-1A;Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein yes no 2 1.1128E-11 158.47 4 0.68879 0.93325 6.2924 4 Median 0.68879 0.93325 6.2924 4 0 Median NaN NaN NaN 0 0 Median 49569000 30008000 19561000 49569000 30008000 19561000 0 0 0 5781 265 5915 20986;20987;20988;20989 31741;31742;31743;31744;31745;31746;31747;31748 31742 8 INVNEITR VERESISRLMQNYEKINVNEITRFSDFPLS LMQNYEKINVNEITRFSDFPLSKKTLKGLQ K I N T R F 0 1 2 0 0 0 1 0 0 2 0 0 0 0 0 0 1 0 0 1 0 0 8 0 957.52434 Q13206;Q86VR6;E9PIF2;Q59EC7;B4DKX3 Q13206 63 70 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 2 0.036252 48.283 1 1 1.0276 1.3341 33.648 2 Median 1.2885 1.6924 NaN 1 0 Median 0.8195 1.0516 NaN 1 0 Median 11545000 5288100 6256900 8289900 3463200 4826700 3255100 1825000 1430200 5782 1466 5916 20990;20991 31749;31750 31749 2 INVTVAK VQRALKEITTFEGCKINVTVAKKKLRNKTK ITTFEGCKINVTVAKKKLRNKTKEKGKNEN K I N A K K 1 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 2 0 0 7 0 743.45414 A0A024R753;Q9NW13;B4DJ90;C9JAA9;C9JE21;A0A0S2Z5E5 A0A024R753 73 79 RBM28 RNA-binding protein 28 yes no 2 0.03732 76.847 2 1.1396 1.4173 4.2973 2 Median 1.1396 1.4173 4.2973 2 0 Median NaN NaN NaN 0 0 Median 34045000 18195000 15850000 34045000 18195000 15850000 0 0 0 5783 169 5917 20992;20993 31751;31752 31752 2 INVYYNEATGGK PTGTYHGDSDLQLERINVYYNEATGGKYVP LERINVYYNEATGGKYVPRAVLVDLEPGTM R I N G K Y 1 0 2 0 0 0 1 2 0 1 0 1 0 0 0 0 1 0 2 1 0 0 12 0 1327.6408 Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;B4DNW1 Q8IZ29 47 58 TUBB2C;TUBB4B Tubulin beta-4B chain yes no 2 1.3469E-05 117.52 3 2 0.43228 0.55842 135.55 5 Median 0.42368 0.54012 16.464 3 0 Median 3.6793 5.8813 1.427 2 0 Median 273300000 150250000 123050000 178500000 129960000 48542000 94799000 20293000 74506000 5784 1423 5918 20994;20995;20996;20997;20998 31753;31754;31755;31756;31757;31758;31759 31755 7 INVYYNESSSQK PAGGYVGDSALQLERINVYYNESSSQKYVP LERINVYYNESSSQKYVPRAALVDLEPGTM R I N Q K Y 0 0 2 0 0 1 1 0 0 1 0 1 0 0 0 3 0 0 2 1 0 0 12 0 1430.6678 Q9BUF5;B4DP54;K7EL29;K7ESQ3;K7EQT3;K7EJ64;K7ERA8;K7EJZ4;K7EN98;K7EPE5 Q9BUF5 47 58 TUBB6 Tubulin beta-6 chain yes no 2 0.00034225 145.25 4 0.33613 0.42609 10.922 3 Median 0.33613 0.42609 10.922 3 0 Median NaN NaN NaN 0 0 Median 21857000 14878000 6978700 21857000 14878000 6978700 0 0 0 5785 1716 5919 20999;21000;21001;21002 31760;31761;31762;31763;31764;31765 31761 6 IPALDLLIK TCTSVYTKDRAAKCKIPALDLLIKLLQTFR RAAKCKIPALDLLIKLLQTFRSSRLMDEFK K I P I K L 1 0 0 1 0 0 0 0 0 2 3 1 0 0 1 0 0 0 0 0 0 0 9 0 994.64267 P78527;B4DL41;F5GX40 P78527 125 133 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.029485 45.68 1 0.47982 0.58599 NaN 1 Median 0.47982 0.58599 NaN 1 0 Median NaN NaN NaN 0 0 Median 3720000 2778600 941420 3720000 2778600 941420 0 0 0 5786 1427 5920 21003 31766 31766 1 IPALPLPTILPPINK QTNEQFTAPQKARCKIPALPLPTILPPINK IPALPLPTILPPINKVCRDTLRDWCQQLGL K I P N K V 1 0 1 0 0 0 0 0 0 3 3 1 0 0 5 0 1 0 0 0 0 0 15 0 1596.0015 Q7Z7J5 Q7Z7J5 80 94 DPPA2 Developmental pluripotency-associated protein 2 yes yes 2 0.0013412 98.943 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5787 1618 5921 21004 31767 31767 1 IPAYFVTVSDPAVPPGEDPDGR IREWCISRQLWWGHRIPAYFVTVSDPAVPP VSDPAVPPGEDPDGRYWVSGRNEAEAREKA R I P G R Y 2 1 0 3 0 0 1 2 0 1 0 0 0 1 5 1 1 0 1 3 0 0 22 0 2298.1168 A0A024RCN6;P26640;A0A140T936;B4DT32;H0Y426 A0A024RCN6 731 752 VARS Valine--tRNA ligase yes no 2 1.1202E-13 125.36 3 0.53646 0.74907 11.074 2 Median 0.53646 0.74907 11.074 2 0 Median NaN NaN NaN 0 0 Median 7193200 4743200 2450000 7193200 4743200 2450000 0 0 0 5788 297 5922 21005;21006;21007 31768;31769;31770 31769 3 IPCDSPQSDPVDTPTSTK PGHTEELVAAGKTTKIPCDSPQSDPVDTPT DSPQSDPVDTPTSTKQRPKRSIRKADVEGE K I P T K Q 0 0 0 3 1 1 0 0 0 1 0 1 0 0 4 3 3 0 0 1 0 0 18 0 1943.8782 P46013 P46013 1249 1266 MKI67 Antigen KI-67 yes yes 2 6.3954E-31 171.81 4 2 0.99268 1.2516 29.595 6 Median 1.0069 1.2701 3.0885 4 0 Median 0.48177 0.72361 0.53634 2 0 Median 79438000 43448000 35989000 57049000 28609000 28440000 22389000 14839000 7549300 5789 1342 5923 21008;21009;21010;21011;21012;21013 31771;31772;31773;31774;31775;31776;31777;31778;31779;31780 31774 10 IPCESPPLEVVDTTASTK SGHTQESLTAGKATKIPCESPPLEVVDTTA ESPPLEVVDTTASTKRHLRTRVQKVQVKEE K I P T K R 1 0 0 1 1 0 2 0 0 1 1 1 0 0 3 2 3 0 0 2 0 0 18 0 1942.9558 P46013 P46013 2704 2721 MKI67 Antigen KI-67 yes yes 2 2.2082E-15 137.09 5 1.1024 1.4143 13.992 3 Median 1.1024 1.4143 13.992 3 0 Median NaN NaN NaN 0 0 Median 19880000 10184000 9696200 19880000 10184000 9696200 0 0 0 5790 1342 5924 21014;21015;21016;21017;21018 31781;31782;31783;31784;31785;31786;31787 31784 7 IPDEFDNDPILVQQLR VYIFGNNPVDENGAKIPDEFDNDPILVQQL PDEFDNDPILVQQLRRTYKYFKDYRQMIIE K I P L R R 0 1 1 3 0 2 1 0 0 2 2 0 0 1 2 0 0 0 0 1 0 0 16 0 1910.9738 Q0VAB1;A0A024R0M6;Q3ZCQ8;M0R047 Q0VAB1 201 216 TIMM50 Mitochondrial import inner membrane translocase subunit TIM50 yes no 2 0.00038842 77.74 2 0.49941 0.68259 NaN 1 Median 0.49941 0.68259 NaN 1 0 Median NaN NaN NaN 0 0 Median 4214000 2578700 1635300 4214000 2578700 1635300 0 0 0 5791 40 5925 21019;21020 31788;31789 31789 2 IPDVDHAIVVLQK I P Q K 1 0 0 2 0 1 0 0 1 2 1 1 0 0 1 0 0 0 0 3 0 0 13 0 1445.8242 REV__Q5T8U3 yes yes 2 0.0014385 78.334 5 0.66081 0.84206 3.0026 5 Median 0.66081 0.84206 3.0026 5 0 Median NaN NaN NaN 0 0 Median 88600000 54809000 33791000 88600000 54809000 33791000 0 0 0 + 5792 1856 5926 21021;21022;21023;21024;21025 31790;31791;31792;31793;31794;31795;31796 31792 5 IPDWFLNR VERVITIMQNPRQYKIPDWFLNRQKDVKDG QNPRQYKIPDWFLNRQKDVKDGKYSQVLAN K I P N R Q 0 1 1 1 0 0 0 0 0 1 1 0 0 1 1 0 0 1 0 0 0 0 8 0 1059.5502 P62269;J3JS69 P62269 79 86 RPS18 40S ribosomal protein S18 yes no 2 0.017941 60.682 1 1.2385 1.8728 NaN 1 Median NaN NaN NaN 0 0 Median 1.2385 1.8728 NaN 1 0 Median 16830000 6907800 9921900 0 0 0 16830000 6907800 9921900 5793 1402 5927 21026 31797 31797 1 IPEGLFDPSNVK FPNGYNCDFGAERLKIPEGLFDPSNVKGLS RLKIPEGLFDPSNVKGLSGKTMLGVSHVVT K I P V K G 0 0 1 1 0 0 1 1 0 1 1 1 0 1 2 1 0 0 0 1 0 0 12 0 1314.682 Q6FI97;Q53FS0;O96019;D3DNS0;O94805 Q6FI97 304 315 BAF53A;ACTL6A;ACTL6B Actin-like protein 6A;Actin-like protein 6B yes no 2 0.00039465 75.387 2 0.65735 0.8257 6.2628 2 Median 0.65735 0.8257 6.2628 2 0 Median NaN NaN NaN 0 0 Median 63878000 38101000 25777000 63878000 38101000 25777000 0 0 0 5794 1227 5928 21027;21028 31798;31799;31800 31800 3 IPFNQALVFSNLHSR VFEEKTQHLQELFSRIPFNQALVFSNLHSR IPFNQALVFSNLHSRAQHLADILSSKGFPA R I P S R A 1 1 2 0 0 1 0 0 1 1 2 0 0 2 1 2 0 0 0 1 0 0 15 0 1741.9264 Q8TDR3;Q8NEH0;Q8IYV2;Q9UHI6 Q8TDR3 307 321 DDX20 Probable ATP-dependent RNA helicase DDX20 yes no 3 0.00037651 87.363 4 0.38557 0.53325 28.779 3 Median 0.38557 0.53325 28.779 3 0 Median NaN NaN NaN 0 0 Median 21168000 15849000 5318800 21168000 15849000 5318800 0 0 0 5795 1630 5929 21029;21030;21031;21032 31801;31802;31803;31804;31805;31806;31807 31803 7 IPGIIIAASAVR SIRSLKSDMMPHLVKIPGIIIAASAVRAKA LVKIPGIIIAASAVRAKATRISIQCRSCRN K I P V R A 3 1 0 0 0 0 0 1 0 4 0 0 0 0 1 1 0 0 0 1 0 0 12 0 1179.7339 Q53FG5;B1AHB0;A8K521;P33992;B1AHB1;B4DQ39;B4DVK5;B3KVF0;B1AHA9;B1AHB2 Q53FG5 151 162 MCM5 DNA helicase;DNA replication licensing factor MCM5 yes no 2 2.7427E-05 100.48 3 1 0.31355 0.42747 13.913 3 Median 0.31355 0.42747 13.913 3 0 Median NaN NaN NaN 0 0 Median 20559000 14126000 6433300 18195000 14126000 4069900 2363400 0 2363400 5796 612 5930 21033;21034;21035;21036 31808;31809;31810;31811;31812 31811 5 IPGIYGR GKVLDAIIQEKKSGRIPGIYGRLGDLGAID IQEKKSGRIPGIYGRLGDLGAIDEKYDVAI R I P G R L 0 1 0 0 0 0 0 2 0 2 0 0 0 0 1 0 0 0 1 0 0 0 7 0 774.43882 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 612 618 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.0078198 120.76 3 0.7084 0.97813 3.0571 3 Median 0.7084 0.97813 3.0571 3 0 Median NaN NaN NaN 0 0 Median 250900000 147950000 102950000 250900000 147950000 102950000 0 0 0 5797 1760 5931 21037;21038;21039 31813;31814;31815;31816 31814 4 IPGLLGVFQK LERGSNTIASAAADKIPGLLGVFQKLIASK AAADKIPGLLGVFQKLIASKANDHQGFYLL K I P Q K L 0 0 0 0 0 1 0 2 0 1 2 1 0 1 1 0 0 0 0 1 0 0 10 0 1070.6488 B4DS32;B4DPS6;B4DUC5;P55060;B4DM31 B4DS32 325 334 CSE1L Exportin-2 yes no 2 4.0455E-05 134.06 3 0.62565 0.8011 NaN 1 Median 0.62565 0.8011 NaN 1 0 Median NaN NaN NaN 0 0 Median 3924700 1807200 2117500 3924700 1807200 2117500 0 0 0 5798 846 5932 21040;21041;21042 31817;31818;31819 31819 3 IPGLLSPHPLLQLSYTATDR KMKVVLAGHGHLYSRIPGLLSPHPLLQLSY SPHPLLQLSYTATDRHPQALEAAQAELQQH R I P D R H 1 1 0 1 0 1 0 1 1 1 5 0 0 0 3 2 2 0 1 0 0 0 20 0 2191.2001 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1254 1273 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 5.5243E-06 112.44 3 0.62608 0.89018 11.769 2 Median 0.62608 0.89018 11.769 2 0 Median NaN NaN NaN 0 0 Median 11011000 8233800 2777700 11011000 8233800 2777700 0 0 0 5799 486 5933 21043;21044;21045 31820;31821;31822 31821 3 IPHDFGLR HGRALMEACNEFYTRIPHDFGLRTPPLIRT CNEFYTRIPHDFGLRTPPLIRTQKELSEKI R I P L R T 0 1 0 1 0 0 0 1 1 1 1 0 0 1 1 0 0 0 0 0 0 0 8 0 953.5083 B4DV82;G3V167;A8K214;Q9UGN5 B4DV82 222 229 PARP2 Poly [ADP-ribose] polymerase 2 yes no 3 0.0093754 75.189 2 0.63459 0.87424 34.28 2 Median 0.63459 0.87424 34.28 2 0 Median NaN NaN NaN 0 0 Median 12826000 8044600 4781200 12826000 8044600 4781200 0 0 0 5800 581 5934 21046;21047 31823;31824;31825 31823 3 IPHFGYCDEIDLTELVK GFQKAMVKTMSAALKIPHFGYCDEIDLTEL HFGYCDEIDLTELVKLREELKPIAFARGIK K I P V K L 0 0 0 2 1 0 2 1 1 2 2 1 0 1 1 0 1 0 1 1 0 0 17 0 2047.9925 P11182;B4E1Q7;Q5VVL7 P11182 273 289 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes no 3 0.00017875 54.805 2 0.4337 0.56131 NaN 1 Median 0.4337 0.56131 NaN 1 0 Median NaN NaN NaN 0 0 Median 7533700 5611800 1921900 7533700 5611800 1921900 0 0 0 5801 1254 5935 21048;21049 31826;31827 31827 2 IPILLIQQPGK LVPGSQLILGPHESKIPILLIQQPGKVTGE HESKIPILLIQQPGKVTGEDRLGWGSGWDV K I P G K V 0 0 0 0 0 2 0 1 0 3 2 1 0 0 2 0 0 0 0 0 0 0 11 0 1218.77 Q96F88;Q99575 Q96F88 595 605 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 2.6339E-08 148.99 3 2 0.35563 0.43582 21.332 5 Median 0.33515 0.42423 5.098 3 0 Median 0.40489 0.61229 4.3072 2 0 Median 66096000 48349000 17748000 30854000 23792000 7061500 35243000 24557000 10686000 5802 1685 5936 21050;21051;21052;21053;21054 31828;31829;31830;31831;31832;31833;31834;31835;31836 31832 9 IPILYGEVEK EKAVLENNLGAAVLRIPILYGEVEKLEESA AAVLRIPILYGEVEKLEESAVTVMFDKVQF R I P E K L 0 0 0 0 0 0 2 1 0 2 1 1 0 0 1 0 0 0 1 1 0 0 10 0 1159.6489 H7C0X7;A8K7A4;A0A140VJP2;Q9NZL9;B7Z1X8 H7C0X7 117 126 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 2 0.037501 46.158 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1975700 0 1975700 0 0 0 1975700 0 1975700 5803 500 5937 21055 31837 31837 1 IPIPCVNAVDSEPCPSNYK VERIVSRDIARGYERIPIPCVNAVDSEPCP CVNAVDSEPCPSNYKYVSQNCVTSPMNIDR R I P Y K Y 1 0 2 1 2 0 1 0 0 2 0 1 0 0 4 2 0 0 1 2 0 0 19 0 2159.0027 A0A1B0GV09;Q9H9B1 A0A1B0GV09 990 1008 EHMT1 Histone-lysine N-methyltransferase EHMT1 no no 2 0.00097137 78.486 1 0.65435 0.86341 NaN 1 Median 0.65435 0.86341 NaN 1 0 Median NaN NaN NaN 0 0 Median 2286300 1600400 685890 2286300 1600400 685890 0 0 0 5804 518 5938 21056 31838;31839;31840 31838 3 IPLLLTSLSFK KKWLEVEIAPDIRGRIPLLLTSLSFKVLKH IRGRIPLLLTSLSFKVLKHPDKKFRVGQAL R I P F K V 0 0 0 0 0 0 0 0 0 1 4 1 0 1 1 2 1 0 0 0 0 0 11 0 1230.7588 Q14690 Q14690 1178 1188 PDCD11 Protein RRP5 homolog yes yes 2 1.3658E-10 172.23 4 1.0668 1.3541 15.183 4 Median 1.0668 1.3541 15.183 4 0 Median NaN NaN NaN 0 0 Median 24165000 11589000 12577000 24165000 11589000 12577000 0 0 0 5805 1494 5939 21057;21058;21059;21060 31841;31842;31843;31844;31845;31846;31847;31848;31849 31845 9 IPLLTTIR DCNLRIFDSSCISSKIPLLTTIRHNTFTGR SSCISSKIPLLTTIRHNTFTGRWLTRFQAM K I P I R H 0 1 0 0 0 0 0 0 0 2 2 0 0 0 1 0 2 0 0 0 0 0 8 0 925.59605 A0A0C4DFX7;Q9H967 A0A0C4DFX7 468 475 WDR76 WD repeat-containing protein 76 yes no 2 0.014793 65.252 1 0.61634 0.84501 NaN 1 Median 0.61634 0.84501 NaN 1 0 Median NaN NaN NaN 0 0 Median 6426900 3815900 2611100 6426900 3815900 2611100 0 0 0 5806 421 5940 21061 31850 31850 1 IPLNPYLNLHSLLPASNLAGK PPGVSLLGEPPKDYRIPLNPYLNLHSLLPA LNLHSLLPASNLAGKEARGWGGAGRSRRPA R I P G K E 2 0 3 0 0 0 0 1 1 1 6 1 0 0 3 2 0 0 1 0 0 0 21 0 2244.263 A0A087WZ13;E9PAU2 A0A087WZ13 504 524 RAVER1 yes no 3 0.012224 43.116 2 0.3286 0.40744 52.407 2 Median 0.3286 0.40744 52.407 2 0 Median NaN NaN NaN 0 0 Median 3685400 2384600 1300800 3685400 2384600 1300800 0 0 0 5807 366 5941 21062;21063 31851;31852 31851 2 IPLVPENLLK SSCTTRKMAEQEQRKIPLVPENLLKKRKAY QEQRKIPLVPENLLKKRKAYQALKATQAKQ K I P L K K 0 0 1 0 0 0 1 0 0 1 3 1 0 0 2 0 0 0 0 1 0 0 10 0 1134.7012 A0A024RD36;Q6DKI1;R4GMU7;B7Z4G0 A0A024RD36 18 27 RPL7L1 60S ribosomal protein L7-like 1 yes no 2 2.2803E-11 141.48 5 2 0.91297 1.2092 36.038 7 Median 0.8414 1.0508 43.474 5 0 Median 0.9211 1.4206 1.9292 2 0 Median 170900000 90347000 80550000 113830000 60921000 52914000 57063000 29426000 27636000 5808 311 5942 21064;21065;21066;21067;21068;21069;21070 31853;31854;31855;31856;31857;31858;31859;31860;31861;31862;31863 31860 11 IPNFDVR LINGAEGIGTGWSCKIPNFDVREIVNNIRR IGTGWSCKIPNFDVREIVNNIRRLMDGEEP K I P V R E 0 1 1 1 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0 7 0 859.4552 P11388 P11388 864 870 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.019232 88.643 4 0.88711 1.2311 2.6503 4 Linear 0.88711 1.2311 2.6503 4 0 Linear NaN NaN NaN 0 0 Median 923280000 499360000 423920000 923280000 499360000 423920000 0 0 0 5809 1256 5943 21071;21072;21073;21074 31864;31865;31866;31867;31868;31869 31866 6 IPPSSAPTVLSVPAGTTIVK SGMAALAAAAAATQKIPPSSAPTVLSVPAG APTVLSVPAGTTIVKTMAVTPGTTTLPATV K I P V K T 2 0 0 0 0 0 0 1 0 2 1 1 0 0 4 3 3 0 0 3 0 0 20 0 1934.1088 A6NEM2;P51610 A6NEM2 559 578 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 2.1089E-11 123.68 4 2 0.83782 1.0821 15.758 5 Median 0.82943 1.053 4.4906 4 0 Median 0.98599 1.4855 NaN 1 0 Median 50950000 31973000 18977000 24058000 13948000 10110000 26892000 18025000 8867100 5810 564 5944 21075;21076;21077;21078;21079;21080 31870;31871;31872;31873;31874;31875;31876;31877;31878;31879;31880;31881 31870 12 IPPVAVR DMKADVTRLPATIARIPPVAVRLQMSERNI RLPATIARIPPVAVRLQMSERNILSRLANR R I P V R L 1 1 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 0 2 0 0 7 0 750.47521 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 1852 1858 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.031298 62.338 1 0.7637 1.0428 NaN 1 Median 0.7637 1.0428 NaN 1 0 Median NaN NaN NaN 0 0 Median 38432000 19328000 19104000 38432000 19328000 19104000 0 0 0 5811 428 5945 21081 31882 31882 1 IPQCSQLQEDVDPQK VRKQSSFILTPPRRKIPQCSQLQEDVDPQK IPQCSQLQEDVDPQKVAFLLHKQWTLYSLT K I P Q K V 0 0 0 2 1 4 1 0 0 1 1 1 0 0 2 1 0 0 0 1 0 0 15 0 1783.8411 A0A024R932;Q8N0S6 A0A024R932 49 63 C1orf155;CENPL Centromere protein L yes no 2 0.00038626 106.54 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5812 212 5946 21082 31883 31883 1 IPSISDLK ANSDEQLGEMFLEEKIPSISDLKATIRRAT EMFLEEKIPSISDLKATIRRATLKRSFTPV K I P L K A 0 0 0 1 0 0 0 0 0 2 1 1 0 0 1 2 0 0 0 0 0 0 8 0 871.50148 D3DNL3;F8WAU4;C9IZ01;E5KND7;E5KND5;Q96RP9;A0A0S2Z5W5 D3DNL3 273 280 GFM1 Elongation factor G, mitochondrial no no 2 0.025756 54.611 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1329600 1329600 0 1329600 1329600 0 0 0 0 5813 933 5947 21083 31884 31884 1 IPSPLGYAAIPIK VARRRKCAARDPEDRIPSPLGYAAIPIKFS DRIPSPLGYAAIPIKFSEKQQASHYLYVRA R I P I K F 2 0 0 0 0 0 0 1 0 3 1 1 0 0 3 1 0 0 1 0 0 0 13 0 1338.7911 Q9Y3A4 Q9Y3A4 17 29 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 2 2.6022E-08 148.56 2 2 0.8754 1.1173 18.479 3 Median 0.84478 1.0677 6.4149 2 0 Median 0.95904 1.4562 NaN 1 0 Median 26705000 11756000 14949000 8397300 4503000 3894300 18308000 7253400 11055000 5814 1815 5948 21084;21085;21086;21087 31885;31886;31887;31888;31889 31885 5 IPVDTYNNILTVLK ATSSAVSKELTRLLKIPVDTYNNILTVLKL KIPVDTYNNILTVLKLKHFHPLFEYFDYES K I P L K L 0 0 2 1 0 0 0 0 0 2 2 1 0 0 1 0 2 0 1 2 0 0 14 0 1601.9029 Q53FR4;Q96QK1;Q5HYM2 Q53FR4 404 417 VPS35;DKFZp686O2462 Vacuolar protein sorting-associated protein 35 yes no 2 1.7831E-06 85.522 4 0.68224 0.85642 26.095 4 Median 0.68224 0.85642 26.095 4 0 Median NaN NaN NaN 0 0 Median 11541000 6547200 4993700 11541000 6547200 4993700 0 0 0 5815 1539 5949 21088;21089;21090;21091 31890;31891;31892;31893 31892 3 IPVLVQSK LKLLQRLLKSPGCRKIPVLVQSKDDVIVTA KSPGCRKIPVLVQSKDDVIVTASNFSSERM K I P S K D 0 0 0 0 0 1 0 0 0 1 1 1 0 0 1 1 0 0 0 2 0 0 8 0 882.55385 A0A024R1S5;O00178;B2RDW9 A0A024R1S5 328 335 GTPBP1 GTP-binding protein 1 yes no 2 0.044775 71.378 1 0.91942 1.1716 NaN 1 Median 0.91942 1.1716 NaN 1 0 Median NaN NaN NaN 0 0 Median 22447000 11706000 10741000 22447000 11706000 10741000 0 0 0 5816 65 5950 21092 31894 31894 1 IPVSGPFLVK NAAPSDLESIFKDAKIPVSGPFLVKTGYAF FKDAKIPVSGPFLVKTGYAFVDCPDESWAL K I P V K T 0 0 0 0 0 0 0 1 0 1 1 1 0 1 2 1 0 0 0 2 0 0 10 0 1055.6379 O00425;F8WD15 O00425 27 36 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes no 2 0.035205 69.812 1 0.54365 0.70855 NaN 1 Median 0.54365 0.70855 NaN 1 0 Median NaN NaN NaN 0 0 Median 4647500 3161300 1486200 4647500 3161300 1486200 0 0 0 5817 1167 5951 21093 31895 31895 1 IPYTTVLR YPTFLHLHGKTFDYKIPYTTVLRLFLLPHK GKTFDYKIPYTTVLRLFLLPHKDQRQMFFV K I P L R L 0 1 0 0 0 0 0 0 0 1 1 0 0 0 1 0 2 0 1 1 0 0 8 0 961.55967 A0A024R4Z6;Q08945;E9PMD4 A0A024R4Z6 234 241 SSRP1 FACT complex subunit SSRP1 yes no 2 0.0023997 115.46 4 2 0.76575 1.0759 9.7214 6 Median 0.76575 1.0576 3.4742 4 0 Median 0.76321 1.2542 4.4852 2 0 Median 746280000 419250000 327030000 453100000 252780000 200320000 293180000 166470000 126700000 5818 132 5952 21094;21095;21096;21097;21098;21099 31896;31897;31898;31899;31900;31901;31902;31903;31904;31905 31898 10 IQAELAVILK MSSKSPRDWEQFEYKIQAELAVILKFVLDH QFEYKIQAELAVILKFVLDHEDGLNLNEDL K I Q L K F 2 0 0 0 0 1 1 0 0 2 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1096.6856 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;F5H0Z7;F5H763;Q86XH4;G1UI36;F5H2F3;F5H3L6;F5GZW1;A8K394;Q4LE64;Q14980 Q4LE64 123 132 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.00065187 120.31 3 0.7052 0.90712 6.3075 3 Median 0.7052 0.90712 6.3075 3 0 Median NaN NaN NaN 0 0 Median 36917000 22265000 14652000 36917000 22265000 14652000 0 0 0 5819 148;1499;590 5953 21100;21101;21102 31906;31907;31908 31906 3 IQALPTVPVTEEHVGSGLECPVCK ______________________________ TEEHVGSGLECPVCKDDYALGERVRQLPCN K I Q C K D 1 0 0 0 2 1 3 2 1 1 2 1 0 0 3 1 2 0 0 4 0 0 24 0 2619.3037 O60372;Q9NPN4;K7EIY6;A8K0Q1;A0A024R206;Q9BV68 O60372 2 25 RNF126 E3 ubiquitin-protein ligase RNF126 yes no 3 0.0014623 50.776 2 0.801 1.0446 NaN 1 Median 0.801 1.0446 NaN 1 0 Median NaN NaN NaN 0 0 Median 5011200 4079600 931610 5011200 4079600 931610 0 0 0 5820 76 5954 21103;21104 31909;31910;31911 31911 2 IQALQQQADEAEDR ______________________________ KIQALQQQADEAEDRAQGLQRELDGERERR K I Q D R A 3 1 0 2 0 4 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 14 0 1613.7645 B4DVY2;V9HW56;P67936;B4DTB1 B4DVY2 14 27 HEL-S-108;TPM4 Tropomyosin alpha-4 chain yes no 2 6.3143E-22 158.06 4 2 1.2007 1.6271 2.3684 3 Median 1.2007 1.6271 2.3684 3 0 Median NaN NaN NaN 0 0 Median 32492000 12565000 19928000 29091000 12565000 16526000 3401900 0 3401900 + 5821 864 5955 21105;21106;21107;21108;21109;21110 31912;31913;31914;31915;31916;31917;31918 31915 7 IQALQQQADEAEDRAQGLQR ______________________________ QQADEAEDRAQGLQRELDGERERREKAEGD K I Q Q R E 4 2 0 2 0 6 2 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 20 1 2267.1254 B4DVY2;V9HW56;P67936;B4DTB1 B4DVY2 14 33 HEL-S-108;TPM4 Tropomyosin alpha-4 chain yes no 3 1.755E-07 87.669 4 0.97149 1.3429 14.561 4 Median 0.97149 1.3429 14.561 4 0 Median NaN NaN NaN 0 0 Median 21104000 8656700 12447000 21104000 8656700 12447000 0 0 0 + 5822 864 5956 21111;21112;21113;21114 31919;31920;31921;31922;31923;31924;31925 31924 7 IQAVLALSR KAMLIRLKDKIPNVRIQAVLALSRLQDPKD KIPNVRIQAVLALSRLQDPKDDECPVVNAY R I Q S R L 2 1 0 0 0 1 0 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 9 0 969.59712 Q9BPX3;Q6NUR1;D6RA93 Q9BPX3 160 168 NCAPG Condensin complex subunit 3 yes no 2 4.0656E-06 112.41 5 2 0.58176 0.8446 10.148 4 Median 0.68577 0.92528 2.0565 2 0 Median 0.50144 0.77726 0.90349 2 0 Median 64877000 41144000 23733000 19827000 11760000 8066700 45050000 29384000 15666000 5823 1706 5957 21115;21116;21117;21118;21119;21120;21121 31926;31927;31928;31929;31930;31931;31932;31933;31934;31935;31936;31937;31938;31939 31930 14 IQCPNQGCEAVYSSVSGLK EVLHKWKTDIKKYHRIQCPNQGCEAVYSSV NQGCEAVYSSVSGLKAHLGSCTLGNFVAGK R I Q L K A 1 0 1 0 2 2 1 2 0 1 1 1 0 0 1 3 0 0 1 2 0 0 19 0 2095.9667 B4DES6;B7Z9P6;G3XAG1;Q96ME7;Q658M0;B4E0X7 B4DES6 301 319 ZNF512;DKFZp666L156 Zinc finger protein 512 yes no 2 1.1708E-40 190.41 5 0.90082 1.1402 21.283 3 Plateau 0.90082 1.1402 21.283 3 0 Plateau NaN NaN NaN 0 0 Median 27949000 15889000 12060000 27949000 15889000 12060000 0 0 0 5824 799 5958 21122;21123;21124;21125;21126 31940;31941;31942;31943;31944;31945;31946;31947;31948;31949;31950 31940 11 IQDIVGILR EQDAQAPDLQRVHKRIQDIVGILRDFGAQR QRVHKRIQDIVGILRDFGAQREEGRSRSEY R I Q L R D 0 1 0 1 0 1 0 1 0 3 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1025.6233 P46087;F5H5X6;F5GYR3 P46087 243 251 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2 6.8414E-09 180.03 4 2 0.65444 0.94048 6.673 6 Median 0.70295 0.9694 8.3362 4 0 Median 0.56393 0.91672 1.157 2 0 Median 404730000 248930000 155790000 260860000 156970000 103890000 143870000 91968000 51904000 5825 1343 5959 21127;21128;21129;21130;21131;21132 31951;31952;31953;31954;31955;31956;31957;31958;31959;31960;31961;31962 31954 12 IQDLIDDK WFSESGKLVTKMFQKIQDLIDDKDALVFVL VTKMFQKIQDLIDDKDALVFVLIDEVESLT K I Q D K D 0 0 0 3 0 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 8 0 958.49713 Q15645;H0YAL2 Q15645 236 243 TRIP13 Pachytene checkpoint protein 2 homolog yes no 2 0.0076964 79.906 1 0.43107 0.55002 NaN 1 Median 0.43107 0.55002 NaN 1 0 Median NaN NaN NaN 0 0 Median 14994000 10697000 4296500 14994000 10697000 4296500 0 0 0 5826 1514 5960 21133 31963 31963 1 IQDPTEDAEAEDTPR DSGNVNGKKRNHTKRIQDPTEDAEAEDTPR IQDPTEDAEAEDTPRKRLRTDKHSLRKRDT R I Q P R K 2 1 0 3 0 1 3 0 0 1 0 0 0 0 2 0 2 0 0 0 0 0 15 0 1685.738 O96028;Q05CW4;H0Y9L4 O96028 532 546 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 2 2.5375E-05 84.352 2 2 0.66545 0.96675 12.006 2 Median NaN NaN NaN 0 0 Median 0.66545 0.96675 12.006 2 0 Median 15634000 8839100 6794700 402860 0 402860 15231000 8839100 6391800 5827 1228 5961 21134;21135;21136;21137 31964;31965;31966;31967;31968;31969 31969 6 IQDRQEAIDWLLGLAVR KFFEKYLRDVNCPFKIQDRQEAIDWLLGLA DRQEAIDWLLGLAVRLEYGDNAEKYKDLVP K I Q V R L 2 2 0 2 0 2 1 1 0 2 3 0 0 0 0 0 0 1 0 1 0 0 17 1 1995.0902 Q5RLJ0;Q549M8;Q9Y224;G3V4C6;H0YJB9 Q5RLJ0 73 89 C14orf166 UPF0568 protein C14orf166 yes no 3 0.0075591 56.25 1 1.8938 2.4894 NaN 1 Median 1.8938 2.4894 NaN 1 0 Median NaN NaN NaN 0 0 Median 1380900 771310 609560 1380900 771310 609560 0 0 0 5828 1544 5962 21138 31970 31970 1 IQDTIEITGTFK IADYLPSYARPRLLRIQDTIEITGTFKHRK LLRIQDTIEITGTFKHRKMTLVEEGFNPAV R I Q F K H 0 0 0 1 0 1 1 1 0 3 0 1 0 1 0 0 3 0 0 0 0 0 12 0 1364.7187 Q53GS2;O14975;G3V1R7;B3KW19 Q53GS2 561 572 SLC27A2 Very long-chain acyl-CoA synthetase yes no 2 0.034141 35.541 1 0.59343 0.75806 NaN 1 Median 0.59343 0.75806 NaN 1 0 Median NaN NaN NaN 0 0 Median 4169200 2359800 1809400 4169200 2359800 1809400 0 0 0 5829 1173 5963 21139 31971 31971 1 IQDWYDK KVQALEEANNDLENKIQDWYDKKGPAAIQK ANNDLENKIQDWYDKKGPAAIQKNYSPYYN K I Q D K K 0 0 0 2 0 1 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 0 7 0 966.4447 CON__P35527;P35527 CON__P35527 185 191 KRT9 Keratin, type I cytoskeletal 9 yes no 2 0.0094144 83.265 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38572000 38572000 0 0 0 0 38572000 38572000 0 + 5830 963 5964 21140;21141 31972;31973;31974;31975 31973 4 IQDYDVSLDK SLILYEEVKPNLTERIQDYDVSLDKALDEL NLTERIQDYDVSLDKALDELMDGDIIVFQK R I Q D K A 0 0 0 3 0 1 0 0 0 1 1 1 0 0 0 1 0 0 1 1 0 0 10 0 1194.5768 Q6U8A4;Q93009;B7ZAX6;B7Z855;H3BND8;B7Z7T5 Q6U8A4 756 765 USP7 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 7 yes no 2 0.00099811 79.974 3 0.48381 0.61151 6.4073 3 Median 0.48381 0.61151 6.4073 3 0 Median NaN NaN NaN 0 0 Median 16549000 11131000 5417500 16549000 11131000 5417500 0 0 0 5831 1600 5965 21142;21143;21144 31976;31977;31978;31979;31980 31980 5 IQEENVIPR KINGDWQRADAVWNKIQEENVIPREKTLRL DAVWNKIQEENVIPREKTLRLLAEILREGN K I Q P R E 0 1 1 0 0 1 2 0 0 2 0 0 0 0 1 0 0 0 0 1 0 0 9 0 1096.5877 E5KNY5;P42704;B4DSR0 E5KNY5 981 989 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.0020094 88.358 2 2 0.52196 0.69598 118.64 3 Median 0.41141 0.55295 32.535 2 0 Median 3.2366 4.1511 NaN 1 0 Median 36536000 22907000 13629000 30327000 21697000 8629800 6209900 1210700 4999200 5832 1001 5966 21145;21146;21147;21148 31981;31982;31983;31984;31985 31983 5 IQELEDLLAK QLSNLQKESRACLERIQELEDLLAKEKDNS ACLERIQELEDLLAKEKDNSRRMLTDKERE R I Q A K E 1 0 0 1 0 1 2 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1170.6496 P20700;E9PBF6;Q6DC98;B4DZT3 P20700 321 330 LMNB1 Lamin-B1 yes no 2 2.242E-16 149.94 5 0.77616 0.9661 6.7522 3 Plateau 0.77616 0.9661 6.7522 3 0 Plateau NaN NaN NaN 0 0 Median 125840000 64227000 61612000 125840000 64227000 61612000 0 0 0 5833 1285 5967 21149;21150;21151;21152;21153 31986;31987;31988;31989;31990 31990 5 IQELEMQAR RQKKLEHANRHLLLRIQELEMQARAHGLSL RHLLLRIQELEMQARAHGLSLIPSTGLCSP R I Q A R A 1 1 0 0 0 2 2 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 9 0 1116.5597 A0A0H3W5T2;B4DNC7;A8K5K3;O75030;B1AKB5;A0A024RCY3;B4DPL3;B0QYS6;B0QYS7;P19484 A0A0H3W5T2 274 282 MITF;TFEB Microphthalmia-associated transcription factor;Transcription factor EB yes no 2 0.020435 42.287 1 0.65681 0.85345 NaN 1 Median NaN NaN NaN 0 0 Median 0.65681 0.85345 NaN 1 0 Median 2747700 1829300 918400 0 0 0 2747700 1829300 918400 5834 440 5968 21154 31991 31991 153 1 IQELENLPGSLAGDLR LQEREYRLQARIAHRIQELENLPGSLAGDL QELENLPGSLAGDLRTKATIELKALRLLNF R I Q L R T 1 1 1 1 0 1 2 2 0 1 4 0 0 0 1 1 0 0 0 0 0 0 16 0 1723.9105 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;Q59FZ6;A5D6X0 A7E2E1 382 397 SMARCA4 Transcription activator BRG1 yes no 2 1.6903E-18 162.31 4 1 0.6662 0.88758 21.625 5 Median 0.6443 0.86675 4.7311 4 0 Median 0.87975 1.3972 NaN 1 0 Median 90173000 53803000 36370000 59958000 37918000 22040000 30215000 15885000 14330000 5835 403 5969 21155;21156;21157;21158;21159 31992;31993;31994;31995;31996;31997;31998;31999 31992 8 IQELENLPGSLPPDLR LQEREYRLQARIAHRIQELENLPGSLPPDL QELENLPGSLPPDLRTKATVELKALRLLNF R I Q L R T 0 1 1 1 0 1 2 1 0 1 4 0 0 0 3 1 0 0 0 0 0 0 16 0 1789.9574 P51531;A0A0U1RQZ9;F6VDE0 P51531 358 373 SMARCA2 Probable global transcription activator SNF2L2 yes no 2 0.0080223 88.092 2 0.89345 1.2427 40.243 2 Median 0.89345 1.2427 40.243 2 0 Median NaN NaN NaN 0 0 Median 3845000 2142500 1702600 3845000 2142500 1702600 0 0 0 5836 1362 5970 21160;21161 32000;32001;32002 32001 3 IQETQAELPR LDTNKSRFVDFQKVRIQETQAELPRGSIPR FQKVRIQETQAELPRGSIPRSLEVILRAEA R I Q P R G 1 1 0 0 0 2 2 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 10 0 1183.6197 Q4ZG57;Q14566 Q4ZG57 172 181 MCM6 DNA replication licensing factor MCM6 yes no 2 5.7351E-05 110.87 2 2 0.45897 0.6043 NaN 1 Median 0.45897 0.6043 NaN 1 0 Median NaN NaN NaN 0 0 Median 20350000 11936000 8414100 14711000 11936000 2775000 5639100 0 5639100 5837 1488 5971 21162;21163;21164;21165 32003;32004;32005;32006;32007 32005 5 IQEVADELQK TQGLIFVVDSNDRERIQEVADELQKMLLVD NDRERIQEVADELQKMLLVDELRDAVLLLF R I Q Q K M 1 0 0 1 0 2 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1171.6085 P18085;C9JPM4;C9JAK5 P18085 100 109 ARF4 ADP-ribosylation factor 4 yes no 2 0.00039326 120.31 1 1 0.45554 0.57879 NaN 1 Median 0.45554 0.57879 NaN 1 0 Median NaN NaN NaN 0 0 Median 29826000 13062000 16764000 17963000 13062000 4900200 11864000 0 11864000 5838 1281 5972 21166;21167 32008;32009 32009 2 IQFDEGYDNYPGQEK ARSATARVRSRPELRIQFDEGYDNYPGQEK IQFDEGYDNYPGQEKTDDLKKRKNIFTGKR R I Q E K T 0 0 1 2 0 2 2 2 0 1 0 1 0 1 1 0 0 0 2 0 0 0 15 0 1801.7795 Q92665 Q92665 226 240 MRPS31 28S ribosomal protein S31, mitochondrial yes yes 2 0.00029429 100.73 3 0.58653 0.73984 21.644 2 Median 0.58653 0.73984 21.644 2 0 Median NaN NaN NaN 0 0 Median 5215500 3629600 1585900 5215500 3629600 1585900 0 0 0 5839 1674 5973 21168;21169;21170 32010;32011;32012 32012 3 IQFKPDDGISPER NGEMIKKIQNDAGVRIQFKPDDGISPERAA VRIQFKPDDGISPERAAQVMGPPDRCQHAA R I Q E R A 0 1 0 2 0 1 1 1 0 2 0 1 0 1 2 1 0 0 0 0 0 0 13 1 1500.7573 A0A024R8A7;Q96I24 A0A024R8A7 287 299 hCG_31253;FUBP3 Far upstream element-binding protein 3 yes no 3 0.040385 23.398 1 0.34023 0.4393 NaN 1 Median 0.34023 0.4393 NaN 1 0 Median NaN NaN NaN 0 0 Median 8513500 5190500 3323000 8513500 5190500 3323000 0 0 0 5840 194 5974 21171 32013 32013 1 IQIASESSGIPERPCVLTGTPESIEQAK GGEQISRIQAESGCKIQIASESSGIPERPC PCVLTGTPESIEQAKRLLGQIVDRCRNGPG K I Q A K R 2 1 0 0 1 2 4 2 0 4 1 1 0 0 3 4 2 0 0 1 0 0 28 1 2996.5125 A0A024R8A7;Q96I24 A0A024R8A7 111 138 hCG_31253;FUBP3 Far upstream element-binding protein 3 yes no 3 7.24E-08 53.475 1 0.49097 0.63306 NaN 1 Median 0.49097 0.63306 NaN 1 0 Median NaN NaN NaN 0 0 Median 7925700 4800600 3125100 7925700 4800600 3125100 0 0 0 5841 194 5975 21172 32014;32015 32015 2 IQIEAIPLALQGR LCEACDQLGWTKPTKIQIEAIPLALQGRDI TKIQIEAIPLALQGRDIIGLAETGSGKTGA K I Q G R D 2 1 0 0 0 2 1 1 0 3 2 0 0 0 1 0 0 0 0 0 0 0 13 0 1420.8402 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;A4UCU0;B4DYP6 Q53GJ1 43 55 hCG_27698;DDX47;E4-DBP Probable ATP-dependent RNA helicase DDX47 yes no 2 4.6912E-52 232.88 4 2 0.86819 1.1817 27.587 6 Median 0.87326 1.2433 3.0359 4 0 Linear 0.43904 0.71701 12.999 2 0 Median 380230000 228050000 152170000 200090000 105140000 94945000 180140000 122910000 57229000 5842 249 5976 21173;21174;21175;21176;21177;21178 32016;32017;32018;32019;32020;32021;32022;32023;32024;32025;32026;32027 32017 12 IQILASEVEEEEERVK TTELMTGNIQSLKNKIQILASEVEEEEERV QILASEVEEEEERVKQMHQINSSGVLSLPE K I Q V K Q 1 1 0 0 0 1 6 0 0 2 1 1 0 0 0 1 0 0 0 2 0 0 16 1 1899.9789 A0A024RD28;Q7L2Z9 A0A024RD28 183 198 C6orf139;CENPQ Centromere protein Q yes no 3 0.002334 70.272 2 0.69819 0.92273 11.589 2 Median 0.69819 0.92273 11.589 2 0 Median NaN NaN NaN 0 0 Median 16624000 7950800 8673400 16624000 7950800 8673400 0 0 0 5843 309 5977 21179;21180 32028;32029 32028 2 IQINQEEER ILDDTEDTVVSQRKKIQINQEEERLKNERT VSQRKKIQINQEEERLKNERTVFVGNLPVT K I Q E R L 0 1 1 0 0 2 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 9 0 1157.5677 P42696;A2A2V2;Q5TCT4 P42696 172 180 RBM34 RNA-binding protein 34 yes no 2 1.5747E-08 138.98 1 2 0.65519 1.0123 13.445 2 Median NaN NaN NaN 0 0 Median 0.65519 1.0123 13.445 2 0 Median 50567000 25979000 24589000 6951200 0 6951200 43616000 25979000 17637000 5844 1339 5978 21181;21182;21183 32030;32031;32032;32033;32034;32035 32035 6 IQIVGLTELQSLAVGPR FCNSKPHDELLQNNRIQIVGLTELQSLAVG IVGLTELQSLAVGPRVFQYGVKVVLQAMYL R I Q P R V 1 1 0 0 0 2 1 2 0 2 3 0 0 0 1 1 1 0 0 2 0 0 17 0 1793.0411 K7EPU3;Q9BT22 K7EPU3 83 99 ALG1 Chitobiosyldiphosphodolichol beta-mannosyltransferase yes no 2 4.3979E-34 187.63 5 0.41983 0.55809 5.7407 3 Plateau 0.41983 0.55809 5.7407 3 0 Plateau NaN NaN NaN 0 0 Median 21171000 13651000 7520000 21171000 13651000 7520000 0 0 0 5845 1150 5979 21184;21185;21186;21187;21188 32036;32037;32038;32039;32040;32041;32042 32036 7 IQLEEYSNTR APNEFDVMFKLEVPRIQLEEYSNTRAYYFV LEVPRIQLEEYSNTRAYYFVKFKRNPKENP R I Q T R A 0 1 1 0 0 1 2 0 0 1 1 0 0 0 0 1 1 0 1 0 0 0 10 0 1251.6095 Q8N884 Q8N884 237 246 MB21D1 Cyclic GMP-AMP synthase yes yes 2 5.0478E-14 191.17 4 2 1.0507 1.4516 5.92 6 Median 1.0893 1.4923 3.9227 4 0 Median 0.84432 1.3754 6.7094 2 0 Median 476850000 244410000 232440000 329320000 161570000 167760000 147520000 82841000 64682000 5846 1643 5980 21189;21190;21191;21192;21193;21194 32043;32044;32045;32046;32047;32048;32049;32050;32051;32052 32044 10 IQLIFER QAYIDFEMKIGDPARIQLIFERALVENCLV MKIGDPARIQLIFERALVENCLVPDLWIRY R I Q E R A 0 1 0 0 0 1 1 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0 7 0 917.53345 Q15020;B4DRG9;F8VV04;B4E3R6 Q15020 329 335 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 0.0042534 120.65 2 2 2.9374 3.8161 2.9674 2 Median NaN NaN NaN 0 0 Median 2.9374 3.8161 2.9674 2 0 Median 16767000 12237000 4529600 10772000 10772000 0 5995000 1465400 4529600 5847 1501 5981 21195;21196;21197;21198 32053;32054;32055;32056 32054 4 IQLKPEQFSSYLTSPDVGFSSYELVATPHNTSK KRKTLTETIYKNYYRIQLKPEQFSSYLTSP FSSYELVATPHNTSKGFQRPVYLFHKARSP R I Q S K G 1 0 1 1 0 2 2 1 1 1 3 2 0 2 3 6 3 0 2 2 0 0 33 1 3669.8203 Q7L2J0 Q7L2J0 640 672 MEPCE 7SK snRNA methylphosphate capping enzyme yes yes 4 0.0021938 41.27 3 0.37466 0.4626 28.153 3 Median 0.37466 0.4626 28.153 3 0 Median NaN NaN NaN 0 0 Median 28925000 22754000 6171100 28925000 22754000 6171100 0 0 0 5848 1611 5982 21199;21200;21201 32057;32058;32059 32057 3 IQLLDLPGIIEGAK TLTTVPGVIRYKGAKIQLLDLPGIIEGAKD KIQLLDLPGIIEGAKDGKGRGRQVIAVART K I Q A K D 1 0 0 1 0 1 1 2 0 3 3 1 0 0 1 0 0 0 0 0 0 0 14 0 1478.8708 Q9Y295 Q9Y295 113 126 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 2 8.9615E-06 111.63 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5849 1804 5983 21202;21203 32060;32061 32061 2 IQLPVVSK LSTCLFGRGIECDIRIQLPVVSKQHCKIEI GIECDIRIQLPVVSKQHCKIEIHEQEAILH R I Q S K Q 0 0 0 0 0 1 0 0 0 1 1 1 0 0 1 1 0 0 0 2 0 0 8 0 882.55385 P46013 P46013 39 46 MKI67 Antigen KI-67 yes yes 2 0.0041136 101.6 5 6 0.91942 1.1716 17.664 7 Median 0.91425 1.1318 5.3836 4 0 Median 0.99964 1.5426 9.7306 3 0 Median 200490000 106670000 93819000 111450000 59855000 51596000 89036000 46814000 42223000 5850 1342 5984 21204;21205;21206;21207;21208;21209;21210;21211;21212;21213;21214 32062;32063;32064;32065;32066;32067;32068;32069;32070;32071;32072;32073;32074;32075;32076;32077;32078;32079;32080;32081;32082;32083;32084 32066 23 IQLQIQETLQR GEFLHELEEKMEVARIQLQIQETLQRQYSH EVARIQLQIQETLQRQYSHHSSVQDAVSQL R I Q Q R Q 0 1 0 0 0 4 1 0 0 2 2 0 0 0 0 0 1 0 0 0 0 0 11 0 1368.7725 B4DLT2;A0A024R071;O75694;E9PF10;B3KMK3 B4DLT2 1115 1125 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.0039655 99.013 3 0.31043 0.42217 0.26702 2 Median 0.31043 0.42217 0.26702 2 0 Median NaN NaN NaN 0 0 Median 22638000 15971000 6667700 22638000 15971000 6667700 0 0 0 5851 29 5985 21215;21216;21217 32085;32086;32087 32087 3 IQLSSLIAAFQVTR MADIEYRLSVGTNEKIQLSSLIAAFQVTRD KIQLSSLIAAFQVTRDLIVAEA________ K I Q T R D 2 1 0 0 0 2 0 0 0 2 2 0 0 1 0 2 1 0 0 1 0 0 14 0 1545.8879 A8K4Z2;Q6LES9;A8K3S0;Q59GW7;P40937 A8K4Z2 235 248 RFC5 Replication factor C subunit 5 yes no 2 6.1412E-33 199.12 5 0.54671 0.72753 20.152 3 Plateau 0.54671 0.72753 20.152 3 0 Plateau NaN NaN NaN 0 0 Median 21533000 15046000 6486300 21533000 15046000 6486300 0 0 0 5852 597 5986 21218;21219;21220;21221;21222 32088;32089;32090;32091;32092;32093;32094;32095;32096 32088 9 IQLVEEELDR AREQAEAEVASLNRRIQLVEEELDRAQERL SLNRRIQLVEEELDRAQERLATALQKLEEA R I Q D R A 0 1 0 1 0 1 3 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1242.6456 Q5HYB6;B2RDE1;A0A0S2Z4I4;A0A0S2Z4G8;A0A0S2Z4G4;A0A087WWU8;D6R904;J3KN67;M1VPF4;P06753;H0YL80;K7EP68;H0YKX5;H0YKP3;B4DTK3;Q8TCG4;C9IZA2;H0YNC7;Q15657;H0YL52;D9YZV5;D9YZV4;A0A0S2Z4G6;A0A0K0K1I0;A0A024R5W6;Q6ZN40;P09493;B4DVY2;V9HW56;P67936;B4DTB1;V9HW25;Q5TCU3;CON__Q3SX28;A7XZE4;Q5TCU8;P07951;K7ERG3;K7ENT6;B4DGC2;Q1ZYL5;F5H7S3;D9YZV7;H7BYY1;H0YK48;B7Z722;B7Z596;Q59GR8 Q5HYB6 56 65 DKFZp686J1372;TPM3;TPM3-ROS1;TPM1;TPM4;HEL-S-108;HEL-S-273;TPM2;TPM2b Tyrosine-protein kinase receptor;Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 2 0.0023581 98.048 3 1.0532 1.4469 26.421 3 Median 1.0532 1.4469 26.421 3 0 Median NaN NaN NaN 0 0 Median 20137000 9634500 10503000 20137000 9634500 10503000 0 0 0 + 5853 465;864;912 5987 21223;21224;21225 32097;32098;32099 32099 3 IQLVEEELDRAQER AREQAEAEVASLNRRIQLVEEELDRAQERL RIQLVEEELDRAQERLATALQKLEEAEKAA R I Q E R L 1 2 0 1 0 2 4 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 14 1 1726.885 Q5HYB6;B2RDE1;A0A0S2Z4I4;A0A0S2Z4G8;A0A0S2Z4G4;A0A087WWU8;D6R904;J3KN67;M1VPF4;P06753;H0YL80;K7EP68;H0YKX5;H0YKP3;B4DTK3;Q8TCG4;C9IZA2;H0YNC7;Q15657;H0YL52;D9YZV5;D9YZV4;A0A0S2Z4G6;A0A0K0K1I0;A0A024R5W6;Q6ZN40;P09493;B4DVY2;V9HW56;P67936;B4DTB1;V9HW25;Q5TCU3;CON__Q3SX28;A7XZE4;Q5TCU8;P07951;K7ERG3;K7ENT6;B4DGC2;Q1ZYL5;F5H7S3;D9YZV7;H7BYY1;H0YK48;B7Z722;B7Z596;Q59GR8 Q5HYB6 56 69 DKFZp686J1372;TPM3;TPM3-ROS1;TPM1;TPM4;HEL-S-108;HEL-S-273;TPM2;TPM2b Tyrosine-protein kinase receptor;Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 3 0.00033624 82.543 4 1 0.91565 1.2492 80.014 4 Median 0.93157 1.263 4.4861 3 0 Plateau 4.2361 6.0256 NaN 1 0 Median 110830000 41130000 69701000 100630000 39118000 61515000 10198000 2011700 8186100 + 5854 465;864;912 5988 21226;21227;21228;21229;21230 32100;32101;32102;32103;32104 32103 5 IQNWLSAK ESKSSWPASTQEGLRIQNWLSAKVRKQLRL STQEGLRIQNWLSAKVRKQLRLKPFYLVPK R I Q A K V 1 0 1 0 0 1 0 0 0 1 1 1 0 0 0 1 0 1 0 0 0 0 8 0 958.52362 Q8N884 Q8N884 340 347 MB21D1 Cyclic GMP-AMP synthase yes yes 2 0.025449 53.968 2 0.67162 0.95599 16.747 2 Median NaN NaN NaN 0 0 Median 0.67162 0.95599 16.747 2 0 Median 12898000 7598400 5299200 0 0 0 12898000 7598400 5299200 5855 1643 5989 21231;21232 32105;32106;32107 32106 3 IQPVHILTSVSSLR LERTEILNQEWKQRRIQPVHILTSVSSLRG RIQPVHILTSVSSLRGTRECSVTSDLDFPT R I Q L R G 0 1 0 0 0 1 0 0 1 2 2 0 0 0 1 3 1 0 0 2 0 0 14 0 1548.8988 A0A090N8E9;Q15910;S4S3R8;F2YMM1;B7Z8K5;G3XAL2;Q59H64;Q6R125;E9PDH6 A0A090N8E9 65 78 EZH2 Histone-lysine N-methyltransferase EZH2 yes no 3 0.00073084 50.024 1 2 0.84112 1.2506 10.647 3 Median 1.0585 1.4406 NaN 1 0 Median 0.78673 1.2093 4.7429 2 0 Median 77202000 37868000 39334000 13899000 5486000 8412500 63304000 32382000 30921000 5856 381 5990 21233;21234;21235 32108;32109;32110;32111;32112;32113 32110 6 IQQGALELLR YTYESKMAFLTRVAKIQQGALELLRSGVIV TRVAKIQQGALELLRSGVIVRLAQCQVYDM K I Q L R S 1 1 0 0 0 2 1 1 0 1 3 0 0 0 0 0 0 0 0 0 0 0 10 0 1139.6663 Q92621;B4DE72;U3KPX2;Q6P486 Q92621 1566 1575 NUP205 Nuclear pore complex protein Nup205 yes no 2 0.030831 48.423 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2009000 0 2009000 0 0 0 2009000 0 2009000 5857 1673 5991 21236 32114 32114 1 IQQILTSTGFSDK VHNIIIPEDFSIADKIQQILTSTGFSDKRA DKIQQILTSTGFSDKRARSMDIDDFIRLLH K I Q D K R 0 0 0 1 0 2 0 1 0 2 1 1 0 1 0 2 2 0 0 0 0 0 13 0 1436.7511 A8K9K8;Q9UNQ2 A8K9K8 276 288 DIMT1 Probable dimethyladenosine transferase yes no 2 9.3119E-13 163.12 4 1.0784 1.3681 11.769 3 Median 1.0784 1.3681 11.769 3 0 Median NaN NaN NaN 0 0 Median 30618000 11814000 18804000 30618000 11814000 18804000 0 0 0 5858 648 5992 21237;21238;21239;21240 32115;32116;32117;32118;32119;32120 32118 6 IQQLAISGLK APKPEENPSLNIQFKIQQLAISGLKVNRLD NIQFKIQQLAISGLKVNRLDMYGEKYKPFK K I Q L K V 1 0 0 0 0 2 0 1 0 2 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1069.6495 B4DRN6;A0A024QZR5;Q9Y2T2;H0YBM0;E5RJ52;Q8NDP0;P53677 B4DRN6 325 334 AP3M1;AP3M2;DKFZp586G1518 AP-3 complex subunit mu-1;AP-3 complex subunit mu-2 yes no 2 0.041248 46.158 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5859 19 5993 21241 32121 32121 1 IQQLPDHFGPGPVNVVLR VNKHGNFGPHLDPKRIQQLPDHFGPGPVNV LPDHFGPGPVNVVLRRIVQACVDCALETKT R I Q L R R 0 1 1 1 0 2 0 2 1 1 2 0 0 1 3 0 0 0 0 3 0 0 18 0 1985.0847 Q9UQR0;B4DZR9;B4DRC2 Q9UQR0 376 393 SCML2 Sex comb on midleg-like protein 2 yes no 3 0.00083888 37.042 1 0.50814 0.75108 NaN 1 Median NaN NaN NaN 0 0 Median 0.50814 0.75108 NaN 1 0 Median 6511300 4453100 2058200 0 0 0 6511300 4453100 2058200 5860 1799 5994 21242 32122 32122 1 IQQLQEILQDLQK LIHSLGKSTTDNDVRIQQLQEILQDLQKRL VRIQQLQEILQDLQKRLESSEAERKQLQVE R I Q Q K R 0 0 0 1 0 5 1 0 0 2 3 1 0 0 0 0 0 0 0 0 0 0 13 0 1595.8883 Q9P0K7;B4DNL3 Q9P0K7 431 443 RAI14 Ankycorbin yes no 2 7.2598E-05 79.693 2 1.0956 1.3999 2.7293 2 Median 1.0956 1.3999 2.7293 2 0 Median NaN NaN NaN 0 0 Median 14844000 7233100 7611200 14844000 7233100 7611200 0 0 0 5861 1777 5995 21243;21244 32123;32124;32125 32125 2 IQQNTFTR PATEKDLAEDAPWKKIQQNTFTRWCNEHLK EDAPWKKIQQNTFTRWCNEHLKCVSKRIAN K I Q T R W 0 1 1 0 0 2 0 0 0 1 0 0 0 1 0 0 2 0 0 0 0 0 8 0 1006.5196 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98;O75369;A0A024R321;Q14315 P21333 44 51 FLNA;FLNB;FLNC Filamin-A;Filamin-B;Filamin-C no no 2 0.0022255 109.86 2 1 0.86057 1.1535 24.437 3 Median 0.80298 1.063 11.567 2 0 Median 1.0929 1.5839 NaN 1 0 Median 55979000 30106000 25873000 43986000 24436000 19550000 11993000 5669600 6323800 5862 1287;1199;1486 5996 21245;21246;21247 32126;32127;32128;32129 32128 4 IQSAIACTNIFPLGR LKQEHQRKEKELLEKIQSAIACTNIFPLGR IQSAIACTNIFPLGRDRMYRRYWIFPSIPG K I Q G R D 2 1 1 0 1 1 0 1 0 3 1 0 0 1 1 1 1 0 0 0 0 0 15 0 1659.8767 D3DS96;Q9NRL2;Q59G54 D3DS96 792 806 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 1.8971E-10 130.44 4 1 0.40994 0.56384 22.823 4 Median 0.42086 0.5575 4.9305 3 0 Plateau 0.62148 0.8595 NaN 1 0 Median 46655000 34438000 12217000 36169000 28429000 7740000 10486000 6008800 4477300 5863 979 5997 21248;21249;21250;21251;21252 32130;32131;32132;32133;32134;32135 32132 6 IQSALEEESVFAVTAVNASEK EMVTWRLLASLYRDRIQSALEEESVFAVTA EESVFAVTAVNASEKTVVEALFQRDSLVRQ R I Q E K T 4 0 1 0 0 1 4 0 0 1 1 1 0 1 0 3 1 0 0 3 0 0 21 0 2221.1114 P57740 P57740 230 250 NUP107 Nuclear pore complex protein Nup107 yes yes 2 1.8901E-38 168.47 3 0.38874 0.50097 14.007 3 Median 0.38874 0.50097 14.007 3 0 Median NaN NaN NaN 0 0 Median 11285000 8359500 2926000 11285000 8359500 2926000 0 0 0 5864 1384 5998 21253;21254;21255 32136;32137;32138;32139 32136 4 IQSIYLER NAVSLFQVDGKTNPKIQSIYLERFPIFKAC DGKTNPKIQSIYLERFPIFKACFSANGEEV K I Q E R F 0 1 0 0 0 1 1 0 0 2 1 0 0 0 0 1 0 0 1 0 0 0 8 0 1020.5604 Q9Y5J1;B2RAX6 Q9Y5J1 288 295 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2 8.6566E-05 127.46 3 2 0.72732 1.0637 10.916 4 Median 0.86907 1.1755 3.5457 2 0 Median 0.62374 0.97686 1.4633 2 0 Median 118870000 60775000 58098000 61683000 27684000 33998000 57190000 33091000 24100000 5865 1830 5999 21256;21257;21258;21259;21260 32140;32141;32142;32143;32144;32145;32146 32141 7 IQSLLDIQEK LRIHQGEHFREVMKRIQSLLDIQEKEFEKF EVMKRIQSLLDIQEKEFEKFKFAIVMMGRH R I Q E K E 0 0 0 1 0 2 1 0 0 2 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1185.6605 Q6U8A4;Q93009;B7ZAX6;B7Z855 Q6U8A4 1034 1043 USP7 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 7 yes no 2 0.0006972 70.056 1 2 0.94988 1.3203 6.8903 2 Median NaN NaN NaN 0 0 Median 0.94988 1.3203 6.8903 2 0 Median 8238100 3997100 4241000 0 0 0 8238100 3997100 4241000 5866 1600 6000 21261;21262;21263 32147;32148;32149 32147 3 IQSQFTDAQK NSQGSEMFGDDDKRKIQSQFTDAQKHYQTL DDKRKIQSQFTDAQKHYQTLVIQLPGYPQH K I Q Q K H 1 0 0 1 0 3 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 10 0 1164.5775 P15924;Q4LE79;B4E2A0;B4DKX6;B4DWT7 P15924 608 617 DSP;DSP variant protein Desmoplakin yes no 2 0.012295 99.815 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5867 1270 6001 21264 32150 32150 1 IQTLPNQNQSQTQPLLK ATYNPNMPFKWNAQRIQTLPNQNQSQTQPL TLPNQNQSQTQPLLKTPPAVLQPIAPQTTF R I Q L K T 0 0 2 0 0 5 0 0 0 1 3 1 0 0 2 1 2 0 0 0 0 0 17 0 1950.0534 A0A0C4DGG8;Q8IX12;F5H3E1;F5H1H2;F5H2E6 A0A0C4DGG8 190 206 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 2 0.0024962 47.288 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1473900 1473900 0 1473900 1473900 0 0 0 0 5868 427 6002 21265 32151 32151 1 IQTLTSSVR FLFRKKKEEVPEFTKIQTLTSSVRESSFVE VPEFTKIQTLTSSVRESSFVEKMKKTGRNI K I Q V R E 0 1 0 0 0 1 0 0 0 1 1 0 0 0 0 2 2 0 0 1 0 0 9 0 1003.5662 B2R6E5;A8K3B4;Q59ED7;H0Y4R2;P16435;E7EWU0 B2R6E5 60 68 POR NADPH--cytochrome P450 reductase yes no 2 0.00030111 92.439 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6253000 6253000 0 6253000 6253000 0 0 0 0 5869 592 6003 21266;21267 32152;32153 32153 2 IQTQPGYANTLR FADIALAPMEAAKVRIQTQPGYANTLRDAA KVRIQTQPGYANTLRDAAPKMYKEEGLKAF R I Q L R D 1 1 1 0 0 2 0 1 0 1 1 0 0 0 1 0 2 0 1 0 0 0 12 0 1360.7099 F8VVM2;Q8NCF7;Q53HC3;B2RE88;A0A024RBE8;A0A024RBH9;Q00325 F8VVM2 189 200 SLC25A3 Phosphate carrier protein, mitochondrial yes no 2 1.7618E-05 137.46 4 2 1.5553 2.0717 100.69 5 Median 0.43418 0.57626 75.094 3 0 Median 2.7657 4.1454 7.8535 2 0 Median 69673000 32204000 37468000 37942000 24724000 13218000 31730000 7479800 24251000 5870 271 6004 21268;21269;21270;21271;21272;21273 32154;32155;32156;32157;32158;32159;32160;32161 32156 8 IQTVPASHLQQGTASGSSK QLQQLQQQGQATQVRIQTVPASHLQQGTAS PASHLQQGTASGSSKAVSTVVVTTAPSPKQ R I Q S K A 2 0 0 0 0 3 0 2 1 1 1 1 0 0 1 4 2 0 0 1 0 0 19 0 1895.9701 A0A024R3K9;A0A024R3N2;Q6P4R8 A0A024R3K9 1261 1279 NFRKB Nuclear factor related to kappa-B-binding protein yes no 3 3.3365E-11 82.609 1 0.52927 0.6681 NaN 1 Median 0.52927 0.6681 NaN 1 0 Median NaN NaN NaN 0 0 Median 10193000 6153600 4039900 10193000 6153600 4039900 0 0 0 5871 101 6005 21274 32162 32162 1 IQVHYYEDGNVQLVSHK FTITPPTAQVVGVLKIQVHYYEDGNVQLVS VHYYEDGNVQLVSHKDVQDSLTVSNEAQTA K I Q H K D 0 0 1 1 0 2 1 1 2 1 1 1 0 0 0 1 0 0 2 3 0 0 17 0 2028.0065 A8K0T9;A0A024R0E5;P52907;Q53GE2;Q53GC7;A4D0V4;P47755;B4DE01 A8K0T9 194 210 CAPZA1;CAPZA2 F-actin-capping protein subunit alpha-1;F-actin-capping protein subunit alpha-2 no no 4 0.0066399 57.173 1 0.94711 1.1956 NaN 1 Median 0.94711 1.1956 NaN 1 0 Median NaN NaN NaN 0 0 Median 12264000 7565200 4698600 12264000 7565200 4698600 0 0 0 5872 32;545 6006 21275 32163 32163 1 IQVLQQQADDAEER ______________________________ KIQVLQQQADDAEERAERLQREVEGERRAR K I Q E R A 2 1 0 2 0 4 2 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 14 0 1641.7958 Q5HYB6;B2RDE1;A0A0S2Z4I4;A0A0S2Z4G8;A0A0S2Z4G4;A0A087WWU8;D6R904;Q8NAG3;B4DWT5;Q5VU61;D6RFM2 Q5HYB6 14 27 DKFZp686J1372;TPM3 yes no 2 1.0152E-19 160.67 5 0.613 0.83885 17.295 2 Median 0.613 0.83885 17.295 2 0 Median NaN NaN NaN 0 0 Median 13705000 9867500 3837700 13705000 9867500 3837700 0 0 0 5873 465 6007 21276;21277;21278;21279;21280 32164;32165;32166;32167;32168;32169 32165 6 IQVLQQQADDAEERAER ______________________________ VLQQQADDAEERAERLQREVEGERRAREQA K I Q E R L 3 2 0 2 0 4 3 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 17 1 1997.9766 Q5HYB6;B2RDE1;A0A0S2Z4I4;A0A0S2Z4G8;A0A0S2Z4G4;A0A087WWU8;D6R904;Q8NAG3;B4DWT5;Q5VU61;D6RFM2 Q5HYB6 14 30 DKFZp686J1372;TPM3 yes no 3 4.3748E-17 142.1 3 0.65326 0.90171 NaN 1 Median 0.65326 0.90171 NaN 1 0 Median NaN NaN NaN 0 0 Median 49736000 25729000 24008000 49736000 25729000 24008000 0 0 0 5874 465 6008 21281;21282;21283 32170;32171;32172 32172 3 IQVQLCFK RERLPTTAQQEDPEKIQVQLCFKTCSPESQ QQEDPEKIQVQLCFKTCSPESQQIYGDIKD K I Q F K T 0 0 0 0 1 2 0 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 8 0 1034.5583 Q4VC44;I3L188;J3KNW1;B3KRZ0;B3KPY2;B3KP60;I3L1A7;I3L287 Q4VC44 686 693 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 2 0.0057507 94.407 3 0.73243 0.92893 23.476 3 Median 0.73243 0.92893 23.476 3 0 Median NaN NaN NaN 0 0 Median 22833000 13760000 9072900 22833000 13760000 9072900 0 0 0 5875 1536 6009 21284;21285;21286 32173;32174;32175;32176 32176 4 IQVTPPGFQLVFLPFADDK FVALVPQEEELDDQKIQVTPPGFQLVFLPF PPGFQLVFLPFADDKRKMPFTEKIMATPEQ K I Q D K R 1 0 0 2 0 2 0 1 0 1 2 1 0 3 3 0 1 0 0 2 0 0 19 0 2131.1354 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356;Q6IC76 A0A024R1N4 425 443 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 2 5.99E-24 156.72 2 0.59416 0.74672 8.3136 2 Median 0.59416 0.74672 8.3136 2 0 Median NaN NaN NaN 0 0 Median 96913000 62360000 34553000 96913000 62360000 34553000 0 0 0 5876 62 6010 21287;21288 32177;32178 32177 2 IQVTPPGFQLVFLPFADDKR FVALVPQEEELDDQKIQVTPPGFQLVFLPF PGFQLVFLPFADDKRKMPFTEKIMATPEQV K I Q K R K 1 1 0 2 0 2 0 1 0 1 2 1 0 3 3 0 1 0 0 2 0 0 20 1 2287.2365 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356;Q6IC76 A0A024R1N4 425 444 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 3 1.0518E-19 140.2 2 0.57033 0.75608 14.198 2 Median 0.57033 0.75608 14.198 2 0 Median NaN NaN NaN 0 0 Median 67819000 42144000 25675000 67819000 42144000 25675000 0 0 0 5877 62 6011 21289;21290 32179;32180;32181;32182;32183 32180 5 IRCEEEDVEMSEDAYTVLTR STTPYSEKDTKQILRIRCEEEDVEMSEDAY EDVEMSEDAYTVLTRIGLETSLRYAIQLIT R I R T R I 1 2 0 2 1 0 5 0 0 1 1 0 1 0 0 1 2 0 1 2 0 0 20 1 2444.0836 Q9Y230;B3KNL2 Q9Y230 373 392 RUVBL2 RuvB-like 2 yes no 3 0.00066374 64.5 1 0.8562 1.1689 NaN 1 Median 0.8562 1.1689 NaN 1 0 Median NaN NaN NaN 0 0 Median 3311400 1384300 1927100 3311400 1384300 1927100 0 0 0 5878 1801 6012 21291 32184 32184 833 1 IRDSEYEIQR SEGQERKPSGSSQNRIRDSEYEIQRQAKKS SSQNRIRDSEYEIQRQAKKSFSTLFLETVK R I R Q R Q 0 2 0 1 0 1 2 0 0 2 0 0 0 0 0 1 0 0 1 0 0 0 10 1 1307.647 Q03188;H0Y8J2 Q03188 247 256 CENPC Centromere protein C yes no 2;3 0.00011899 112.36 3 3 0.57805 0.80101 8.5362 5 Median 0.63647 0.85084 2.9636 2 0 Median 0.57805 0.80101 7.7027 3 0 Plateau 32050000 18764000 13286000 13538000 7579700 5957900 18513000 11184000 7328300 5879 1439 6013 21292;21293;21294;21295;21296;21297 32185;32186;32187;32188;32189;32190 32187 6 IRDTPEDIVLEAPASGLAFHPAR GSDEEDPDSMEAPTRIRDTPEDIVLEAPAS VLEAPASGLAFHPARDLLAAGDVDGDVFVF R I R A R D 4 2 0 2 0 0 2 1 1 2 2 0 0 1 3 1 1 0 0 1 0 0 23 1 2474.2918 Q9H6Y2;D6RGJ8 Q9H6Y2 28 50 WDR55 WD repeat-containing protein 55 yes no 3;4 1.0283E-05 48.077 2 3 0.71453 1.0054 13.416 5 Median 0.68204 0.92836 9.7109 2 0 Median 0.72718 1.0378 12.193 3 0 Median 59579000 33771000 25807000 13802000 7400100 6402200 45776000 26371000 19405000 5880 1740 6014 21298;21299;21300;21301;21302 32191;32192;32193;32194;32195;32196;32197;32198;32199 32196 9 IREDLPNLESSEETEQINK NDAVTIQVLNQLIQKIREDLPNLESSEETE LPNLESSEETEQINKHFHNTLEHLRLRRES K I R N K H 0 1 2 1 0 1 5 0 0 2 2 1 0 0 1 2 1 0 0 0 0 0 19 1 2243.0917 Q53FR4;Q96QK1;Q5HYM2 Q53FR4 750 768 VPS35;DKFZp686O2462 Vacuolar protein sorting-associated protein 35 yes no 3 1.689E-06 60.034 3 0.78675 0.9952 26.649 3 Median 0.78675 0.9952 26.649 3 0 Median NaN NaN NaN 0 0 Median 17007000 10451000 6556200 17007000 10451000 6556200 0 0 0 5881 1539 6015 21303;21304;21305 32200;32201;32202;32203 32202 3 IREEYPDR GGGTGSGMGTLLISKIREEYPDRIMNTFSV GTLLISKIREEYPDRIMNTFSVVPSPKVSD K I R D R I 0 2 0 1 0 0 2 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 8 1 1076.5251 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;Q1KSF8;Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;Q9BVA1;Q13885;A0A024QZU2;B2R6L0;O43209;B7Z4N1;Q9UGA2;A5D907;A5D906;A1L195;A6NNZ2;A1L196;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;Q2NKY5;Q3ZCM7;A0A075B736;Q5SQY0;A0A183YE00 Q5JP53 137 144 TUBB;XTP3TPATP1;TUBB2C;TUBB4B;TUBB2B;TUBB2A;DKFZp566F223;TUBB1;TUBB6;TUBB8 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-8 chain no no 2;3 7.8442E-16 175.44 8 2 0.38322 0.5247 103.18 10 Median 0.37344 0.50591 7.3239 8 0 Median 3.8487 5.8144 8.6683 2 0 Median 829910000 559010000 270900000 753980000 542930000 211050000 75931000 16085000 59846000 5882 1241;1423;1479;1528;1532 6016 21306;21307;21308;21309;21310;21311;21312;21313;21314;21315 32204;32205;32206;32207;32208;32209;32210;32211;32212;32213;32214;32215;32216;32217;32218 32210 15 IRELESQISELQEDLESER RVEEEAAQKNMALKKIRELESQISELQEDL ESQISELQEDLESERASRNKAEKQKRDLGE K I R E R A 0 2 0 1 0 2 6 0 0 2 3 0 0 0 0 3 0 0 0 0 0 0 19 1 2302.1288 A0A024R1N1;P35579;Q86XU5;Q99529;A0A0U4BW16 A0A024R1N1 1106 1124 MYH9 Myosin-9 no no 3 2.8817E-39 138.46 5 1 0.9578 1.2991 98.498 5 Median 0.95464 1.2916 8.4133 4 0 Median 7.406 11.307 NaN 1 0 Median 242120000 113210000 128910000 224840000 111180000 113660000 17276000 2031400 15245000 5883 61;490 6017 21316;21317;21318;21319;21320;21321 32219;32220;32221;32222;32223;32224;32225;32226 32222 8 IRELGSLPQEAFEK RQGMLLKKKEECMKKIRELGSLPQEAFEKY KIRELGSLPQEAFEKYQTLSLKQLFRKLEQ K I R E K Y 1 1 0 0 0 1 3 1 0 1 2 1 0 1 1 1 0 0 0 0 0 0 14 1 1615.857 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 943 956 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 3 0.0070918 29.013 1 0.60383 0.7724 NaN 1 Median 0.60383 0.7724 NaN 1 0 Median NaN NaN NaN 0 0 Median 9542200 5631700 3910600 9542200 5631700 3910600 0 0 0 5884 663 6018 21322 32227;32228 32227 2 IRELTAVVQK LATRTQNVLGEKGRRIRELTAVVQKRFGFP EKGRRIRELTAVVQKRFGFPEGSVELYAEK R I R Q K R 1 1 0 0 0 1 1 0 0 1 1 1 0 0 0 0 1 0 0 2 0 0 10 1 1155.6976 P23396;Q53G83;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;H0YF32;A7E2S3;E9PQ96;E9PJH4;E9PK82 P23396 66 75 RPS3 40S ribosomal protein S3 yes no 2;3 0.00098293 99.788 7 0.72141 0.94061 9.7593 7 Median 0.72141 0.94061 9.7593 7 0 Median NaN NaN NaN 0 0 Median 354330000 201390000 152940000 354330000 201390000 152940000 0 0 0 5885 1293 6019 21323;21324;21325;21326;21327;21328;21329 32229;32230;32231;32232;32233;32234;32235;32236;32237;32238;32239;32240 32234 12 IREQEYYLVK NLYDFEVEYLCDYKKIREQEYYLVKWRGYP CDYKKIREQEYYLVKWRGYPDSESTWEPRQ K I R V K W 0 1 0 0 0 1 2 0 0 1 1 1 0 0 0 0 0 0 2 1 0 0 10 1 1339.7136 O43463 O43463 54 63 SUV39H1 Histone-lysine N-methyltransferase SUV39H1 yes yes 2;3 0.0064436 68.735 3 1 0.92094 1.2087 63.892 4 Linear 0.83885 1.1028 59.373 3 0 Plateau 0.22218 0.33579 NaN 1 0 Median 50452000 31811000 18641000 45835000 28088000 17747000 4617500 3723000 894510 5886 1185 6020 21330;21331;21332;21333 32241;32242;32243;32244 32243 4 IRGEEPAVTEETLCVGLAR NQAAQQLLEIVQNQRIRGEEPAVTEETLCV EPAVTEETLCVGLARVGADDQKIAAGTLRQ R I R A R V 2 2 0 0 1 0 4 2 0 1 2 0 0 0 1 0 2 0 0 2 0 0 19 1 2099.0681 B3KWP1;Q9H2P9 B3KWP1 93 111 DPH5 Diphthine synthase yes no 3 0.00036491 47.618 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3618400 3618400 0 3618400 3618400 0 0 0 0 5887 784 6021 21334 32245;32246 32245 2 IRGINGVSPK NFYVPAEPKLAFVIRIRGINGVSPKVRKVL AFVIRIRGINGVSPKVRKVLQLLRLRQIFN R I R P K V 0 1 1 0 0 0 0 2 0 2 0 1 0 0 1 1 0 0 0 1 0 0 10 1 1039.6138 A0A024R814;P18124;A8MUD9;C9JIJ5;C9JZ88;D3DWG1 A0A024R814 106 115 RPL7;hCG_1810802 60S ribosomal protein L7 yes no 3 0.0071369 54.539 2 0.63088 0.83604 12.28 2 Median 0.63088 0.83604 12.28 2 0 Median NaN NaN NaN 0 0 Median 28183000 16717000 11466000 28183000 16717000 11466000 0 0 0 5888 189 6022 21335;21336 32247;32248;32249 32249 3 IRGPEESQPPQLYAADEEEAPGTR ______________________________ PQLYAADEEEAPGTRDPTRLRPVYARAGLL R I R T R D 3 2 0 1 0 2 5 2 0 1 1 0 0 0 4 1 1 0 1 0 0 0 24 1 2639.2463 Q5RKV6 Q5RKV6 8 31 EXOSC6 Exosome complex component MTR3 yes yes 3 0.044355 50.536 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 517610 517610 0 517610 517610 0 0 0 0 5889 1562 6023 21337 32250 32250 1 IRGPEESQPPQLYAADEEEAPGTRDPTR ______________________________ AADEEEAPGTRDPTRLRPVYARAGLLSQAK R I R T R L 3 3 0 2 0 2 5 2 0 1 1 0 0 0 5 1 2 0 1 0 0 0 28 2 3108.4748 Q5RKV6 Q5RKV6 8 35 EXOSC6 Exosome complex component MTR3 yes yes 4 4.7003E-08 84.025 3 2 0.66044 0.85401 10.881 3 Median 0.66044 0.85401 10.881 3 0 Median NaN NaN NaN 0 0 Median 66576000 45515000 21060000 46635000 25574000 21060000 19941000 19941000 0 5890 1562 6024 21338;21339;21340;21341;21342 32251;32252;32253;32254;32255;32256;32257;32258 32253 8 IRIDSLSAQLSQLQK SNLVGAAHEELQQSRIRIDSLSAQLSQLQK IRIDSLSAQLSQLQKQLAAKEAKLRDLEDS R I R Q K Q 1 1 0 1 0 3 0 0 0 2 3 1 0 0 0 3 0 0 0 0 0 0 15 1 1698.9628 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;Q5TCI8 P02545 297 311 LMNA Prelamin-A/C;Lamin-A/C yes no 2;3 6.8216E-23 176.43 8 2 0.6022 0.79799 53.125 10 Median 0.58838 0.77959 16.185 8 0 Median 1.449 2.5219 9.4364 2 0 Median 919750000 511410000 408340000 696800000 420350000 276450000 222950000 91060000 131890000 5891 1229 6025 21343;21344;21345;21346;21347;21348;21349;21350;21351;21352 32259;32260;32261;32262;32263;32264;32265;32266;32267;32268;32269;32270;32271;32272;32273;32274;32275;32276 32274 17 IRLENEIQTYR TECQNTEYQQLLDIKIRLENEIQTYRSLLE LDIKIRLENEIQTYRSLLEGEGSSGGGGRG K I R Y R S 0 2 1 0 0 1 2 0 0 2 1 0 0 0 0 0 1 0 1 0 0 0 11 1 1433.7627 CON__P13645;P13645 CON__P13645 440 450 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 3.2169E-31 190.57 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 201000000 201000000 0 124370000 124370000 0 76630000 76630000 0 + 5892 960 6026 21353;21354;21355 32277;32278;32279 32277 3 IRLESEEEGVPSTAIR KGRHKTTGQVVAMKKIRLESEEEGVPSTAI RLESEEEGVPSTAIREISLLKELRHPNIVS K I R I R E 1 2 0 0 0 0 4 1 0 2 1 0 0 0 1 2 1 0 0 1 0 0 16 1 1784.9268 A0A024QZP7;P06493;Q5H9N4;A0A087WZZ9;I6L9I5;E5RIU6;A0A024QZJ8;B7Z3D6 A0A024QZP7 35 50 CDC2;CDK1;DKFZp686L20222 Cyclin-dependent kinase 1 yes no 2;3 7.5362E-05 82.069 4 2 0.62964 0.86251 29.252 6 Median 0.61589 0.84203 2.7202 4 0 Median 0.95198 1.4813 3.1749 2 0 Median 292560000 174800000 117760000 209620000 131100000 78522000 82946000 43707000 39239000 5893 18 6027 21356;21357;21358;21359;21360;21361 32280;32281;32282;32283;32284;32285;32286;32287;32288 32288 9 IRPLTEAEK VSLMELFKDITPSYKIRPLTEAEKSTKTRK ITPSYKIRPLTEAEKSTKTRKETQKLREFE K I R E K S 1 1 0 0 0 0 2 0 0 1 1 1 0 0 1 0 1 0 0 0 0 0 9 1 1055.5975 A8K905;Q8WTT2;B4DXL4 A8K905 275 283 NOC3L Nucleolar complex protein 3 homolog yes no 2 0.027359 91.265 1 1 0.73495 1.0693 17.645 2 Median 0.8955 1.2114 NaN 1 0 Median 0.60317 0.94388 NaN 1 0 Median 19505000 11581000 7924000 7297100 3659100 3638100 12208000 7921800 4286000 5894 643 6028 21362;21363 32289;32290 32290 2 IRVDFSITK EAKERANGMELDGRRIRVDFSITKRPHTPT ELDGRRIRVDFSITKRPHTPTPGIYMGRPT R I R T K R 0 1 0 1 0 0 0 0 0 2 0 1 0 1 0 1 1 0 0 1 0 0 9 1 1077.6182 Q8N1H4;Q68DZ9;Q59GA1;B2RDQ3;P62995;H7C2L4;H7BXF3 Q8N1H4 153 161 DKFZp686F18120;TRA2B Transformer-2 protein homolog beta yes no 2;3 6.1438E-05 142 6 1 0.43483 0.57851 27.735 7 Median 0.49736 0.57015 7.1739 6 0 Linear 0.72178 1.1982 NaN 1 0 Median 220520000 145310000 75210000 198450000 132520000 65931000 22067000 12789000 9278600 5895 740 6029 21364;21365;21366;21367;21368;21369;21370 32291;32292;32293;32294;32295;32296;32297;32298;32299;32300 32291 10 IRVDLASETSSR QALKRNGAQIADGFRIRVDLASETSSRDKR GFRIRVDLASETSSRDKRSVFVGNLPYKVE R I R S R D 1 2 0 1 0 0 1 0 0 1 1 0 0 0 0 3 1 0 0 1 0 0 12 1 1332.6997 P42696;A2A2V2 P42696 273 284 RBM34 RNA-binding protein 34 yes no 2;3 1.2826E-06 140.63 4 2 0.8816 1.1961 21.606 5 Median 0.89603 1.2213 17.773 3 0 Median 0.6949 0.97246 2.8141 2 0 Median 55764000 27245000 28519000 39923000 17776000 22147000 15841000 9469100 6372200 5896 1339 6030 21371;21372;21373;21374;21375;21376 32301;32302;32303;32304;32305;32306;32307 32301 7 IRVESLLVTAISK VIDPGFAKQKVYNPRIRVESLLVTAISKAS PRIRVESLLVTAISKASAQQRAGRAGRTRP R I R S K A 1 1 0 0 0 0 1 0 0 2 2 1 0 0 0 2 1 0 0 2 0 0 13 1 1427.8712 O43143;B4E0S6 O43143 451 463 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2;3 0.00042816 80.871 2 3 0.62985 0.90939 30.606 4 Median 0.5785 0.77419 11.197 2 0 Median 0.77899 1.2 27.648 2 0 Median 31723000 17520000 14203000 16631000 10128000 6503000 15092000 7392200 7700200 5897 1180 6031 21377;21378;21379;21380;21381 32308;32309;32310;32311;32312;32313 32311 6 IRYESGDHVAVYPANDSALVNQLGK ERHLMHLELDISDSKIRYESGDHVAVYPAN VYPANDSALVNQLGKILGADLDVVMSLNNL K I R G K I 3 1 2 2 0 1 1 2 1 1 2 1 0 0 1 2 0 0 2 3 0 0 25 1 2715.3616 B2R6E5;A8K3B4;Q59ED7;H0Y4R2;P16435;Q63HL4;B4DJI8;B4E305;B4DKM8;E7EMD0;B4DDH3 B2R6E5 315 339 POR;DKFZp686G04235 NADPH--cytochrome P450 reductase yes no 4 0.014799 34.139 1 0.29997 0.40269 NaN 1 Median 0.29997 0.40269 NaN 1 0 Median NaN NaN NaN 0 0 Median 4541800 2860800 1681000 4541800 2860800 1681000 0 0 0 5898 592 6032 21382 32314 32314 1 IRYESLTDPSK FLRELISNASDALDKIRYESLTDPSKLDSG ALDKIRYESLTDPSKLDSGKELKIDIIPNP K I R S K L 0 1 0 1 0 0 1 0 0 1 1 1 0 0 1 2 1 0 1 0 0 0 11 1 1307.6721 A0A024RD80;P08238;B4DMA2;Q6PK50;Q58FF7;O14942;Q58FF8;K9JA46;P07900;Q2VPJ6;G3V2J8;B4DTA5;Q86SX1;Q58FF6 A0A024RD80 54 64 HSP90AB1;HSP90AB3P;HSP90AB2P;EL52;HSP90AA1;HSP90AB4P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4 no no 2;3 1.6418E-13 188.99 7 1 0.40655 0.53445 92.505 8 Median 0.40566 0.53332 7.5261 7 0 Median 4.6835 7.356 NaN 1 0 Median 511160000 349140000 162020000 499430000 346560000 152870000 11724000 2579300 9144800 5899 312;1155;1551;1550 6033 21383;21384;21385;21386;21387;21388;21389;21390 32315;32316;32317;32318;32319;32320;32321;32322;32323;32324;32325 32315 11 ISAFQSAFHSIK GSPALYRNVNTLRERISAFQSAFHSIKENE RERISAFQSAFHSIKENEKMTGCLEFSEAG R I S I K E 2 0 0 0 0 1 0 0 1 2 0 1 0 2 0 3 0 0 0 0 0 0 12 0 1334.6983 E9PEI0;Q69YH5;A8K8Z0;B7Z5Q5 E9PEI0 130 141 CDCA2 Cell division cycle-associated protein 2 yes no 3 0.0010318 71.806 3 2 0.62006 0.91467 11.417 5 Median 0.72119 0.91467 15.289 3 0 Median 0.59059 0.89081 7.3222 2 0 Median 61028000 35601000 25427000 32982000 18431000 14551000 28045000 17170000 10876000 5900 1023 6034 21391;21392;21393;21394;21395 32326;32327;32328;32329;32330 32326 5 ISAILHPSTYLNK EEEYLQLTFDKSVFKISAILHPSTYLNKIL FKISAILHPSTYLNKILLGSEQGSLQLWNV K I S N K I 1 0 1 0 0 0 0 0 1 2 2 1 0 0 1 2 1 0 1 0 0 0 13 0 1455.8086 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 151 163 WDR36 WD repeat-containing protein 36 yes no 3 1.4909E-06 119.74 3 0.84159 1.0495 11.847 3 Median 0.84159 1.0495 11.847 3 0 Median NaN NaN NaN 0 0 Median 157940000 83641000 74295000 157940000 83641000 74295000 0 0 0 5901 404 6035 21396;21397;21398 32331;32332;32333;32334;32335 32334 5 ISAISVAERVAAER GKGSACRIVCTQPRRISAISVAERVAAERA RISAISVAERVAAERAESCGSGNSTGYQIR R I S E R A 4 2 0 0 0 0 2 0 0 2 0 0 0 0 0 2 0 0 0 2 0 0 14 1 1470.8154 E7EWK3;B7Z8P5;Q9H2U1 E7EWK3 181 194 DHX36 ATP-dependent RNA helicase DHX36 yes no 3 0.026585 25.322 2 0.67515 0.96928 0.76019 2 Median NaN NaN NaN 0 0 Median 0.67515 0.96928 0.76019 2 0 Median 20290000 10612000 9677600 0 0 0 20290000 10612000 9677600 5902 919 6036 21399;21400 32336;32337;32338;32339 32337 4 ISANENSLAVR PPGPEVCITHQEGEKISANENSLAVRSTPA EGEKISANENSLAVRSTPAEDDSRDSQVKS K I S V R S 2 1 2 0 0 0 1 0 0 1 1 0 0 0 0 2 0 0 0 1 0 0 11 0 1172.6149 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2;F8VRN8 F8VQE1 165 175 LIMA1 LIM domain and actin-binding protein 1 yes no 2 7.6628E-18 182.39 4 2 0.70284 0.96486 43.06 6 Median 0.66941 0.91596 5.1526 4 0 Median 1.4275 2.1224 3.0778 2 0 Median 598830000 356960000 241870000 567540000 344800000 222740000 31290000 12157000 19133000 5903 834 6037 21401;21402;21403;21404;21405;21406 32340;32341;32342;32343;32344;32345;32346;32347;32348;32349;32350;32351 32346 12 ISAPNEFDVMFK GVGLLNTGSYYEHVKISAPNEFDVMFKLEV HVKISAPNEFDVMFKLEVPRIQLEEYSNTR K I S F K L 1 0 1 1 0 0 1 0 0 1 0 1 1 2 1 1 0 0 0 1 0 0 12 0 1396.6697 Q8N884 Q8N884 220 231 MB21D1 Cyclic GMP-AMP synthase yes yes 2 0.0017486 94.692 3 1 1.2478 1.5824 9.0037 3 Median 1.2478 1.5824 9.0037 3 0 Median NaN NaN NaN 0 0 Median 36756000 10384000 26372000 23739000 10384000 13355000 13017000 0 13017000 5904 1643 6038;6039 21407;21408;21409;21410 32352;32353;32354;32355;32356 32355 5 ISASLQSQSPEHLLPVLIQAAQLCR ALLAMYTNQAEQCRKISASLQSQSPEHLLP EHLLPVLIQAAQLCREKQHTKAIELLQEFS K I S C R E 3 1 0 0 1 4 1 0 1 2 5 0 0 0 2 4 0 0 0 1 0 0 25 0 2758.48 V9HWK0;O76094;Q86X80;A0PJJ5;Q71V07;Q0D2M6;D6RDY6;O15302 V9HWK0 326 350 HEL103;SRP72 Signal recognition particle subunit SRP72 yes no 3 5.2772E-14 109.05 4 0.46849 0.64791 33.176 3 Median 0.46849 0.64791 33.176 3 0 Median NaN NaN NaN 0 0 Median 20922000 14445000 6476500 20922000 14445000 6476500 0 0 0 5905 1211 6040 21411;21412;21413;21414 32357;32358;32359;32360;32361;32362;32363 32363 7 ISAVQFPESADTTAK SSPLQGTPASSLVSKISAVQFPESADTTAK ISAVQFPESADTTAKQSLGSHRALTYTQSA K I S A K Q 3 0 0 1 0 1 1 0 0 1 0 1 0 1 1 2 2 0 0 1 0 0 15 0 1563.7781 Q14432 Q14432 542 556 PDE3A cGMP-inhibited 3,5-cyclic phosphodiesterase A yes yes 2 7.4257E-06 126.5 3 0.60659 0.76016 NaN 1 Median 0.60659 0.76016 NaN 1 0 Median NaN NaN NaN 0 0 Median 10337000 6933000 3404400 10337000 6933000 3404400 0 0 0 5906 1487 6041 21415;21416;21417 32364;32365;32366 32365 3 ISAVSVAER DRAAECNIVVTQPRRISAVSVAERVAFERG VTQPRRISAVSVAERVAFERGEEPGKSCGY R I S E R V 2 1 0 0 0 0 1 0 0 1 0 0 0 0 0 2 0 0 0 2 0 0 9 0 930.51345 Q08211;Q58F26;Q6PJK6 Q08211 448 456 DHX9 ATP-dependent RNA helicase A yes no 2 0.0002437 123.98 3 2 0.67335 0.91555 8.6886 5 Median 0.72522 0.96602 5.074 3 0 Median 0.53505 0.83689 3.1797 2 0 Median 120660000 73373000 47284000 66090000 38476000 27614000 54567000 34897000 19670000 5907 1448 6042 21418;21419;21420;21421;21422 32367;32368;32369;32370;32371;32372;32373 32368 7 ISDEGIAYLVK QQQRLLDIAKKENVKISDEGIAYLVKVSEG ENVKISDEGIAYLVKVSEGDLRKAITFLQS K I S V K V 1 0 0 1 0 0 1 1 0 2 1 1 0 0 0 1 0 0 1 1 0 0 11 0 1206.6496 P35249;C9JZI1 P35249 222 232 RFC4 Replication factor C subunit 4 yes no 2 0.034998 47.187 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5908 1317 6043 21423 32374 32374 1 ISDIQSQLEK QSKVPLSEFDFSWSKISDIQSQLEKLIEKN FSWSKISDIQSQLEKLIEKNYFLHKSAQEA K I S E K L 0 0 0 1 0 2 1 0 0 2 1 1 0 0 0 2 0 0 0 0 0 0 10 0 1159.6085 Q4ZG72;A0A024RAH8;Q9NVP1 Q4ZG72 434 443 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 3.8352E-11 175.91 2 2 0.81412 1.1788 16.239 4 Median 1.0546 1.3766 7.38 2 0 Median 0.66394 1.05 1.8159 2 0 Median 423440000 229560000 193880000 183280000 85963000 97321000 240150000 143590000 96559000 5909 242 6044 21424;21425;21426;21427 32375;32376;32377;32378;32379;32380;32381;32382 32377 8 ISDLEICADEFPGSSATYR HKTQTPPVEENVTQKISDLEICADEFPGSS EICADEFPGSSATYRILEVGCGVGNTVFPI K I S Y R I 2 1 0 2 1 0 2 1 0 2 1 0 0 1 1 3 1 0 1 0 0 0 19 0 2129.9575 B4DSX4;A0A087WW35;Q96IZ6;Q6P1Q9 B4DSX4 29 47 METTL2A;METTL2B Methyltransferase-like protein 2A;Methyltransferase-like protein 2B yes no 2 2.1033E-07 124.51 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2016500 2016500 0 2016500 2016500 0 0 0 0 5910 353 6045 21428;21429 32383;32384 32383 2 ISDSVLVDIK GYEQAARVAIEHLDKISDSVLVDIKDTEPL EHLDKISDSVLVDIKDTEPLIQTAKTTLGS K I S I K D 0 0 0 2 0 0 0 0 0 2 1 1 0 0 0 2 0 0 0 2 0 0 10 0 1087.6125 B4DE30;E7ENZ3;B7ZAR1;B4DDU6;B4DZT5;B4DXI1;E9PCA1;Q9BU08;V9HW37;P48643;B4DX08 B4DE30 76 85 CCT5;HEL-S-69 T-complex protein 1 subunit epsilon yes no 2 0.0050058 62.823 1 0.40231 0.51173 NaN 1 Median 0.40231 0.51173 NaN 1 0 Median NaN NaN NaN 0 0 Median 6934200 4954200 1980000 6934200 4954200 1980000 0 0 0 5911 795 6046 21430 32385;32386 32386 2 ISDSVLVDIKDTEPLIQTAK GYEQAARVAIEHLDKISDSVLVDIKDTEPL LVDIKDTEPLIQTAKTTLGSKVVNSCHRQM K I S A K T 1 0 0 3 0 1 1 0 0 3 2 2 0 0 1 2 2 0 0 2 0 0 20 1 2184.1889 B4DE30;E7ENZ3;B7ZAR1;B4DDU6;B4DZT5;B4DXI1;E9PCA1;Q9BU08;V9HW37;P48643 B4DE30 76 95 CCT5;HEL-S-69 T-complex protein 1 subunit epsilon yes no 3 5.2143E-10 78.021 1 0.36561 0.44273 NaN 1 Median 0.36561 0.44273 NaN 1 0 Median NaN NaN NaN 0 0 Median 5792800 4124800 1668000 5792800 4124800 1668000 0 0 0 5912 795 6047 21431 32387 32387 1 ISELEFHTDK HIIRVYFFGSGQPEKISELEFHTDKVDSIQ GQPEKISELEFHTDKVDSIQFSNTSNRFVS K I S D K V 0 0 0 1 0 0 2 0 1 1 1 1 0 1 0 1 1 0 0 0 0 0 10 0 1217.5928 Q8WWQ0 Q8WWQ0 358 367 PHIP PH-interacting protein yes yes 2;3 6.8295E-26 209.58 8 2 0.89773 1.2169 20.902 9 Median 1.0185 1.2762 23.515 7 0 Median 0.81235 1.1998 2.0092 2 0 Median 239350000 115770000 123580000 224380000 108010000 116370000 14968000 7762900 7204900 5913 1668 6048 21432;21433;21434;21435;21436;21437;21438;21439;21440;21441 32388;32389;32390;32391;32392;32393;32394;32395;32396;32397;32398;32399;32400;32401;32402;32403;32404 32392 17 ISELEFHTDKVDSIQFSNTSNR HIIRVYFFGSGQPEKISELEFHTDKVDSIQ TDKVDSIQFSNTSNRFVSGSRDGTARIWQF K I S N R F 0 1 2 2 0 1 2 0 1 2 1 1 0 2 0 4 2 0 0 1 0 0 22 1 2566.23 Q8WWQ0 Q8WWQ0 358 379 PHIP PH-interacting protein yes yes 3 2.6262E-05 83.063 1 1.1997 1.6096 NaN 1 Median 1.1997 1.6096 NaN 1 0 Median NaN NaN NaN 0 0 Median 3513600 1550400 1963200 3513600 1550400 1963200 0 0 0 5914 1668 6049 21442 32405;32406;32407 32405 3 ISELEGNLQTLR SELARKEEMDKLLDKISELEGNLQTLRNSN LDKISELEGNLQTLRNSNST__________ K I S L R N 0 1 1 0 0 1 2 1 0 1 3 0 0 0 0 1 1 0 0 0 0 0 12 0 1371.7358 D3DTX6;Q96SB3;B3KNT0;Q96B17 D3DTX6 801 812 PPP1R9B Neurabin-2 yes no 2 0.00036042 95.483 2 0.51708 0.73497 NaN 1 Median 0.51708 0.73497 NaN 1 0 Median NaN NaN NaN 0 0 Median 5626400 3487200 2139200 5626400 3487200 2139200 0 0 0 5915 980 6050 21443;21444 32408;32409 32409 2 ISELEIINSSFENILQEK EKENLTNELQKEQERISELEIINSSFENIL LEIINSSFENILQEKEQEKVQMKEKSSTAM R I S E K E 0 0 2 0 0 1 4 0 0 4 2 1 0 1 0 3 0 0 0 0 0 0 18 0 2105.0892 P49454 P49454 2504 2521 CENPF Centromere protein F yes yes 2 1.5378E-50 198.48 4 0.73216 0.94123 6.5506 4 Median 0.73216 0.94123 6.5506 4 0 Median NaN NaN NaN 0 0 Median 23910000 13324000 10585000 23910000 13324000 10585000 0 0 0 5916 1351 6051 21445;21446;21447;21448 32410;32411;32412;32413;32414;32415;32416 32410 7 ISELGAGNGGVVFK QKQKVGELKDDDFEKISELGAGNGGVVFKV KISELGAGNGGVVFKVSHKPSGLVMARKLI K I S F K V 1 0 1 0 0 0 1 4 0 1 1 1 0 1 0 1 0 0 0 2 0 0 14 0 1346.7194 B4DFY5;A4QPA9;Q02750 B4DFY5 49 62 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 yes no 2 0.0032019 43.168 1 0.86793 1.0606 NaN 1 Median 0.86793 1.0606 NaN 1 0 Median NaN NaN NaN 0 0 Median 21561000 11207000 10354000 21561000 11207000 10354000 0 0 0 5917 558 6052 21449 32417 32417 1 ISELGSQLSDEAVEDGLFHEFK SAPGGGDGAEYKTLKISELGSQLSDEAVED LSDEAVEDGLFHEFKRFGDVSVKISHLSGS K I S F K R 1 0 0 2 0 1 4 2 1 1 3 1 0 2 0 3 0 0 0 1 0 0 22 0 2449.1649 A0A087WWP4;Q96T37 A0A087WWP4 130 151 RBM15 Putative RNA-binding protein 15 yes no 3 4.6306E-05 76.678 2 0.31797 0.39924 29.881 2 Median 0.31797 0.39924 29.881 2 0 Median NaN NaN NaN 0 0 Median 6952500 4574300 2378200 6952500 4574300 2378200 0 0 0 5918 355 6053 21450;21451 32418;32419 32418 2 ISELSLCDLAGSER IRILHLQGEGDIVPKISELSLCDLAGSERC KISELSLCDLAGSERCKDQKSGERLKEAGN K I S E R C 1 1 0 1 1 0 2 1 0 1 3 0 0 0 0 3 0 0 0 0 0 0 14 0 1548.7454 O95235 O95235 401 414 KIF20A Kinesin-like protein KIF20A yes yes 2 6.1961E-22 178.95 3 2 0.75986 1.0349 27.214 5 Median 0.80201 1.0915 4.6586 3 0 Median 0.41941 0.66376 2.079 2 0 Median 177110000 108530000 68576000 106470000 58092000 48375000 70642000 50441000 20200000 5919 1215 6054 21452;21453;21454;21455;21456 32420;32421;32422;32423;32424;32425;32426;32427;32428 32420 9 ISELTSELTDERNTGESASQLLDAETAER ERNELRLNSDRLESRISELTSELTDERNTG GESASQLLDAETAERLRAEKEMKELQTQYD R I S E R L 3 2 1 2 0 1 6 1 0 1 4 0 0 0 0 4 4 0 0 0 0 0 29 1 3164.4957 A0A0D9SFK2;A0A024QZ63;Q92614;B4DYM1;B4E0T8;B4DZ32 A0A0D9SFK2 1290 1318 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 3 4.1494E-14 105.04 3 0.45021 0.59025 19.157 2 Median 0.45021 0.59025 19.157 2 0 Median NaN NaN NaN 0 0 Median 18113000 13983000 4130300 18113000 13983000 4130300 0 0 0 5920 6 6055 21457;21458;21459 32429;32430;32431;32432;32433;32434 32429 6 ISEQFTAMFR TFIGNSTAIQELFKRISEQFTAMFRRKAFL ELFKRISEQFTAMFRRKAFLHWYTGEGMDE R I S F R R 1 1 0 0 0 1 1 0 0 1 0 0 1 2 0 1 1 0 0 0 0 0 10 0 1228.591 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;B4DMU8;Q96B85;B4DXZ5;B4DMJ5;Q6P602;A4UCU2;Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;Q96HX0;B4DFH6;Q9BVA1;Q13885;A0A024QZU2;B2R6L0;O43209;B7Z4N1;P04350;B4DJ43;B4DE77;Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q53G92 Q5JP53 363 372 TUBB;TUBB2C;TUBB4B;TUBB2B;TUBB2A;TUBB4A;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain;Tubulin beta-3 chain no no 2 0.00025913 106.68 4 0.35115 0.49298 35.193 2 Median 0.35115 0.49298 35.193 2 0 Median NaN NaN NaN 0 0 Median 23581000 21149000 2432100 23581000 21149000 2432100 0 0 0 5921 1241;1423;1230;1479;416 6056 21460;21461;21462;21463 32435;32436;32437;32438 32437 4 ISEVVELLK DRLDAIEDLMVVPDKISEVVELLKKLPDLE MVVPDKISEVVELLKKLPDLERLLSKIHNV K I S L K K 0 0 0 0 0 0 2 0 0 1 2 1 0 0 0 1 0 0 0 2 0 0 9 0 1028.6118 P52701;A0A087WWJ1;Q1L838 P52701 805 813 MSH6;GTBP DNA mismatch repair protein Msh6 yes no 2 0.032765 72.23 2 0.38443 0.49202 42.287 2 Median 0.38443 0.49202 42.287 2 0 Median NaN NaN NaN 0 0 Median 4013600 2701900 1311700 4013600 2701900 1311700 0 0 0 5922 1365 6057 21464;21465 32439;32440 32440 2 ISEYSEAAITIR QTARWKVTPKEALQRISEYSEAAITIRGTY LQRISEYSEAAITIRGTYFPPGKEPKEGER R I S I R G 2 1 0 0 0 0 2 0 0 3 0 0 0 0 0 2 1 0 1 0 0 0 12 0 1351.6983 A8K6X3;A0A0C4DG89;Q7L014 A8K6X3 959 970 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.00040441 78.653 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2821000 2821000 0 2821000 2821000 0 0 0 0 5923 424 6058 21466;21467;21468 32441;32442;32443 32443 3 ISFEEFER MSGFSPELIDYLEGKISFEEFERRREERKT IDYLEGKISFEEFERRREERKTREKKSLQE K I S E R R 0 1 0 0 0 0 3 0 0 1 0 0 0 2 0 1 0 0 0 0 0 0 8 0 1055.4924 Q9Y5Q9;F8WC64;H0YFI7 Q9Y5Q9 16 23 GTF3C3 General transcription factor 3C polypeptide 3 yes no 2 0.028424 52.403 1 0.52963 0.73753 NaN 1 Median 0.52963 0.73753 NaN 1 0 Median NaN NaN NaN 0 0 Median 5093800 3318500 1775300 5093800 3318500 1775300 0 0 0 5924 1831 6059 21469 32444 32444 1 ISFGTDYGCCIVELGK KRLDGRQTYDYRNIRISFGTDYGCCIVELG SFGTDYGCCIVELGKTRVLGQVSCELVSPK R I S G K T 0 0 0 1 2 0 1 3 0 2 1 1 0 1 0 1 1 0 1 1 0 0 16 0 1817.8328 B4DXG8;D6RIY6;A5PLM5;Q06265;D6R905;D6RA17;D6RAP4 B4DXG8 37 52 EXOSC9 Exosome complex component RRP45 yes no 2 1.4771E-06 73.435 2 1.8185 2.2691 NaN 1 Median 1.8185 2.2691 NaN 1 0 Median NaN NaN NaN 0 0 Median 11379000 2835500 8543700 11379000 2835500 8543700 0 0 0 5925 559 6060 21470;21471 32445;32446 32445 2 ISFLENNLEQLTK IDSDDTGGSAAQKQKISFLENNLEQLTKVH QKISFLENNLEQLTKVHKQLVRDNADLRCE K I S T K V 0 0 2 0 0 1 2 0 0 1 3 1 0 1 0 1 1 0 0 0 0 0 13 0 1547.8195 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;B4DS27;A0A0G2JMZ6;A1L179;B2RCP3;O60282;Q12840;J3KNA1;B7Z2M7;B0I1S7;Q57Z91;Q59GB8 V9HW29 832 844 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5C;KIF5A Kinesin-like protein;Kinesin-1 heavy chain;Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A yes no 2 0.0004484 89.561 3 0.66649 0.86249 19.603 2 Median 0.66649 0.86249 19.603 2 0 Median NaN NaN NaN 0 0 Median 11017000 7949300 3068200 11017000 7949300 3068200 0 0 0 5926 978 6061 21472;21473;21474 32447;32448;32449;32450 32450 3 ISFVEEDVHPK SPSPGRSPQRLKETRISFVEEDVHPKWIPG KETRISFVEEDVHPKWIPGAADDSKLEVFT R I S P K W 0 0 0 1 0 0 2 0 1 1 0 1 0 1 1 1 0 0 0 2 0 0 11 0 1298.6507 Q8WYP5;B3KVE5;B3KTD2 Q8WYP5 1231 1241 AHCTF1 Protein ELYS yes no 2;3 0.00212 78.939 2 1 0.74304 0.93683 NaN 1 Median 0.74304 0.93683 NaN 1 0 Median NaN NaN NaN 0 0 Median 24151000 19773000 4377900 20763000 16385000 4377900 3388200 3388200 0 5927 1670 6062 21475;21476;21477 32451;32452;32453 32453 3 ISGALFTNDK PPKKRGLAPIECYNRISGALFTNDKFQVST ECYNRISGALFTNDKFQVSTNKLTFMDLEL R I S D K F 1 0 1 1 0 0 0 1 0 1 1 1 0 1 0 1 1 0 0 0 0 0 10 0 1064.5502 A6NHR9;J3KRK8 A6NHR9 509 518 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.0045733 64.04 2 0.75402 0.96475 20.321 2 Median 0.75402 0.96475 20.321 2 0 Median NaN NaN NaN 0 0 Median 13599000 7602500 5996100 13599000 7602500 5996100 0 0 0 5928 568 6063 21478;21479 32454;32455 32454 2 ISGDLSSEEER EQLEWRSILLDMATRISGDLSSEEERFMKP MATRISGDLSSEEERFMKPKVTMIAWNQND R I S E R F 0 1 0 1 0 0 3 1 0 1 1 0 0 0 0 3 0 0 0 0 0 0 11 0 1220.5521 Q9NSI6;Q5R2U6;H0Y463;Q5R2U5;H0Y4A7;Q5R2U4;H0Y4R9;Q5R2U9;H0Y500;Q5R2U8;H0Y5I9 Q9NSI6 413 423 BRWD1;WDR9 Bromodomain and WD repeat-containing protein 1 yes no 2 0.00036454 81.338 2 2 0.84818 1.148 12.69 4 Median 0.80733 1.1203 0.96818 2 0 Median 0.94728 1.3058 15.735 2 0 Median 19710000 11479000 8231100 8407500 4691200 3716300 11302000 6787400 4514700 5929 1758 6064 21480;21481;21482;21483 32456;32457;32458;32459;32460 32458 5 ISGLIYEETR KPAIRRLARRGGVKRISGLIYEETRGVLKV GGVKRISGLIYEETRGVLKVFLENVIRDAV R I S T R G 0 1 0 0 0 0 2 1 0 2 1 0 0 0 0 1 1 0 1 0 0 0 10 0 1179.6136 B2R4R0;P62805;Q0VAS5;Q6B823 B2R4R0 47 56 HIST1H4H;HIST1H4A Histone H4 yes no 2;3 4.7483E-55 217.64 85 18 0.72699 1.0066 38.378 26 Median 0.72948 1.026 18.817 21 0 Median 0.55951 0.73725 86.204 5 0 Median 13809000000 13269000000 540330000 11096000000 10722000000 373260000 2713400000 2546300000 167070000 5930 686 6065 21484;21485;21486;21487;21488;21489;21490;21491;21492;21493;21494;21495;21496;21497;21498;21499;21500;21501;21502;21503;21504;21505;21506;21507;21508;21509;21510;21511;21512;21513;21514;21515;21516;21517;21518;21519;21520;21521;21522;21523;21524;21525;21526;21527;21528;21529;21530;21531;21532;21533;21534;21535;21536;21537;21538;21539;21540;21541;21542;21543;21544;21545;21546;21547;21548;21549;21550;21551;21552;21553;21554;21555;21556;21557;21558;21559;21560;21561;21562;21563;21564;21565;21566;21567;21568;21569;21570;21571;21572;21573;21574;21575;21576;21577;21578;21579;21580;21581;21582;21583;21584;21585;21586 32461;32462;32463;32464;32465;32466;32467;32468;32469;32470;32471;32472;32473;32474;32475;32476;32477;32478;32479;32480;32481;32482;32483;32484;32485;32486;32487;32488;32489;32490;32491;32492;32493;32494;32495;32496;32497;32498;32499;32500;32501;32502;32503;32504;32505;32506;32507;32508;32509;32510;32511;32512;32513;32514;32515;32516;32517;32518;32519;32520;32521;32522;32523;32524;32525;32526;32527;32528;32529;32530;32531;32532;32533;32534;32535;32536;32537;32538;32539;32540;32541;32542;32543;32544;32545;32546;32547;32548;32549;32550;32551;32552;32553;32554;32555;32556;32557;32558;32559;32560;32561;32562;32563;32564;32565;32566;32567;32568;32569;32570;32571;32572;32573;32574;32575;32576;32577;32578;32579;32580;32581;32582;32583;32584;32585;32586;32587;32588;32589;32590;32591;32592;32593;32594;32595;32596;32597;32598;32599 32466 138 ISGLIYEETRGVLK KPAIRRLARRGGVKRISGLIYEETRGVLKV RISGLIYEETRGVLKVFLENVIRDAVTYTE R I S L K V 0 1 0 0 0 0 2 2 0 2 2 1 0 0 0 1 1 0 1 1 0 0 14 1 1576.8825 B2R4R0;P62805;Q0VAS5;Q6B823 B2R4R0 47 60 HIST1H4H;HIST1H4A Histone H4 yes no 2;3 1.257E-10 111.31 6 2 0.7782 1.0373 22.099 8 Median 0.7782 1.0279 16.402 6 0 Median 0.80731 1.3872 24.165 2 0 Median 319800000 174100000 145700000 237620000 128970000 108650000 82187000 45131000 37056000 5931 686 6066 21587;21588;21589;21590;21591;21592;21593;21594 32600;32601;32602;32603;32604;32605;32606;32607;32608;32609;32610;32611 32606 11 ISGPNPLSCLK LVKNTEQSRRKKRKKISGPNPLSCLKKKKK KRKKISGPNPLSCLKKKKKAPDTQSSASEK K I S L K K 0 0 1 0 1 0 0 1 0 1 2 1 0 0 2 2 0 0 0 0 0 0 11 0 1184.6223 Q9BRU9 Q9BRU9 199 209 UTP23 rRNA-processing protein UTP23 homolog yes yes 2 0.035079 66.92 1 1.4081 1.8533 NaN 1 Median 1.4081 1.8533 NaN 1 0 Median NaN NaN NaN 0 0 Median 3007500 815660 2191800 3007500 815660 2191800 0 0 0 5932 1709 6067 21595 32612 32612 1 ISGVGIDQPPYGIFVINQK KIHSDCAANQQVTYRISGVGIDQPPYGIFV GIDQPPYGIFVINQKTGEINITSIVDREVT R I S Q K T 0 0 1 1 0 2 0 3 0 4 0 1 0 1 2 1 0 0 1 2 0 0 19 0 2044.0993 Q02413 Q02413 87 105 DSG1 Desmoglein-1 yes yes 2 0.0020673 86.738 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4327700 4327700 0 4327700 4327700 0 0 0 0 5933 1435 6068 21596;21597 32613;32614 32614 2 ISGVQVNVK SEGKGPGKRRGPTIKISGVQVNVKSIIQHE RGPTIKISGVQVNVKSIIQHEEEFEMLHKS K I S V K S 0 0 1 0 0 1 0 1 0 1 0 1 0 0 0 1 0 0 0 3 0 0 9 0 942.54983 A0A024RC75;O14647 A0A024RC75 1212 1220 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 2 0.021621 51.335 1 0.62358 0.78802 NaN 1 Median 0.62358 0.78802 NaN 1 0 Median NaN NaN NaN 0 0 Median 11750000 6363800 5386600 11750000 6363800 5386600 0 0 0 5934 289 6069 21598 32615 32615 1 ISHELQVK RLMEICESLEKTKQKISHELQVKESQVNFQ LEKTKQKISHELQVKESQVNFQEGQLNSGK K I S V K E 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 1 0 0 0 1 0 0 8 0 952.53418 P49454 P49454 86 93 CENPF Centromere protein F yes yes 2 0.042961 44.753 1 0.95779 1.2717 NaN 1 Median NaN NaN NaN 0 0 Median 0.95779 1.2717 NaN 1 0 Median 2987100 1521800 1465300 0 0 0 2987100 1521800 1465300 5935 1351 6070 21599 32616 32616 1 ISHFPAADLGFSVSQR SLALDNPNEEVAEVKISHFPAADLGFSVSQ SHFPAADLGFSVSQRCFVLQPKEKIVISVN K I S Q R C 2 1 0 1 0 1 0 1 1 1 1 0 0 2 1 3 0 0 0 1 0 0 16 0 1730.874 Q8IZT6;B3KWI2;Q4G1H2;Q4G1H0;A0A087WV76 Q8IZT6 79 94 ASPM Abnormal spindle-like microcephaly-associated protein yes no 3 0.036294 16.836 1 0.62889 0.84159 NaN 1 Median 0.62889 0.84159 NaN 1 0 Median NaN NaN NaN 0 0 Median 7395100 4227700 3167400 7395100 4227700 3167400 0 0 0 5936 1631 6071 21600 32617 32617 1 ISHLPLVEELR MYPKYDRITNHIHVRISHLPLVEELRSLRQ IHVRISHLPLVEELRSLRQLHLNQLIRTSG R I S L R S 0 1 0 0 0 0 2 0 1 1 3 0 0 0 1 1 0 0 0 1 0 0 11 0 1304.7452 B4DSV5;B3KXZ4;H0Y8E6;P49736;B7Z8Z6 B4DSV5 155 165 MCM2 DNA helicase;DNA replication licensing factor MCM2 yes no 3 0.0010314 63.408 2 0.40194 0.56826 NaN 1 Median 0.40194 0.56826 NaN 1 0 Median NaN NaN NaN 0 0 Median 5360100 4770500 589560 5360100 4770500 589560 0 0 0 5937 790 6072 21601;21602 32618;32619 32619 2 ISIEGNIAAGK CPSFSASSEGTRIKKISIEGNIAAGKSTFV RIKKISIEGNIAAGKSTFVNILKQLCEDWE K I S G K S 2 0 1 0 0 0 1 2 0 3 0 1 0 0 0 1 0 0 0 0 0 0 11 0 1071.5924 D6RCP9;F5CTF3;D6RFG8;P27707 D6RCP9 24 34 DCK Deoxycytidine kinase yes no 2 0.00085845 70.256 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 5938 992 6073 21603 32620 32620 1 ISIGGGSCAISGGYGSR GFGSRSLYGLGGSKRISIGGGSCAISGGYG IGGGSCAISGGYGSRAGGSYGFGGPGFPVC R I S S R A 1 1 0 0 1 0 0 6 0 3 0 0 0 0 0 4 0 0 1 0 0 0 17 0 1597.7519 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;B4DRY0;A0A0S2Z427;CON__P04259;B4DKV4 B4DRR0 70 86 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 1.2278E-06 124.47 4 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31468000 31468000 0 15412000 15412000 0 16056000 16056000 0 + 5939 459;953 6074 21604;21605;21606;21607;21608 32621;32622;32623;32624;32625 32623 5 ISINQALQHAFIQEK KDLLDQILMLDPAKRISINQALQHAFIQEK ISINQALQHAFIQEKI______________ R I S E K I 2 0 1 0 0 3 1 0 1 3 1 1 0 1 0 1 0 0 0 0 0 0 15 0 1738.9366 B4DZQ5;A0A024QZY5;Q13523;H0YDJ3;D3DWH5 B4DZQ5 978 992 PRPF4B;hCG_1820375 Serine/threonine-protein kinase PRP4 homolog yes no 3 0.002599 27.149 1 1 0.57506 0.75698 7.4783 2 Median 0.56026 0.71799 NaN 1 0 Median 0.59025 0.79808 NaN 1 0 Median 7666900 4522800 3144200 4383600 2496000 1887600 3283300 2026700 1256600 5940 24 6075 21609;21610 32626;32627 32627 2 ISISTSGGSFR GYGSRSLYNLGGSKRISISTSGGSFRNRFG GSKRISISTSGGSFRNRFGAGAGGGYGFGG R I S F R N 0 1 0 0 0 0 0 2 0 2 0 0 0 1 0 4 1 0 0 0 0 0 11 0 1110.5669 CON__P13647;P13647;F8VV57 CON__P13647 74 84 KRT5 Keratin, type II cytoskeletal 5 yes no 2 0.0013486 82.749 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46187000 46187000 0 15658000 15658000 0 30529000 30529000 0 + 5941 961 6076 21611;21612;21613 32628;32629;32630 32628 3 ISLGLPVGAVINCADNTGAK ______________________________ PVGAVINCADNTGAKNLYIISVKGIKGRLN R I S A K N 3 0 2 1 1 0 0 3 0 2 2 1 0 0 1 1 1 0 0 2 0 0 20 0 1969.0303 Q9BTQ7;A0A024R1Q8;P62829;J3KT29;C9JD32;B9ZVP7 Q9BTQ7 10 29 RPL23 60S ribosomal protein L23 yes no 2 1.6954E-24 157.68 6 3 0.8812 1.1806 19.582 8 Median 0.91588 1.1816 14.198 5 0 Median 0.55972 0.89455 20 3 0 Median 4335900000 2431200000 1904800000 3126400000 1641500000 1484900000 1209500000 789680000 419810000 5942 63 6077 21614;21615;21616;21617;21618;21619;21620;21621;21622 32631;32632;32633;32634;32635;32636;32637;32638;32639;32640;32641;32642;32643;32644;32645;32646;32647;32648 32637 18 ISLHPIEDNPIEEISVLSPEDLEAIK EHNSKIKYWHKEISKISLHPIEDNPIEEIS EEISVLSPEDLEAIKNPDSITNQIALLEAR K I S I K N 1 0 1 2 0 0 5 0 1 5 3 1 0 0 3 3 0 0 0 1 0 0 26 0 2899.5066 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1042 1067 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 0.017972 32.855 1 0.63015 0.80533 NaN 1 Median 0.63015 0.80533 NaN 1 0 Median NaN NaN NaN 0 0 Median 37711000 22646000 15066000 37711000 22646000 15066000 0 0 0 5943 1760 6078 21623 32649 32649 1 ISLHPIEDNPIEEISVLSPEDLEAIKNPDSITNQIALLEAR EHNSKIKYWHKEISKISLHPIEDNPIEEIS NPDSITNQIALLEARCHEMKPNLGAIAEYK K I S A R C 3 1 3 3 0 1 6 0 1 7 5 1 0 0 4 4 1 0 0 1 0 0 41 1 4535.3647 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1042 1082 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 4 3.6934E-31 112.96 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25945000 25945000 0 25945000 25945000 0 0 0 0 5944 1760 6079 21624;21625 32650;32651 32650 2 ISLIQIFR DLTGIFMHGKIPTLKISLIQIFRAHLWQKI GKIPTLKISLIQIFRAHLWQKIHESIVMDL K I S F R A 0 1 0 0 0 1 0 0 0 3 1 0 0 1 0 1 0 0 0 0 0 0 8 0 988.60695 Q6P2Q9;B4DK16;Q6JH02;Q6JH03;I3L3Z8 Q6P2Q9 1571 1578 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.00025767 138.24 4 2 0.61264 0.8346 33.946 5 Median 0.57134 0.76127 5.4604 3 0 Median 1.0046 1.4134 19.37 2 0 Median 76177000 44488000 31689000 64669000 38519000 26150000 11508000 5969500 5538600 5945 1592 6080 21626;21627;21628;21629;21630;21631 32652;32653;32654;32655;32656;32657;32658;32659;32660;32661 32653 10 ISLPEAMQLLQDR DGPPHQVLVVPLHSRISLPEAMQLLQDRDT SRISLPEAMQLLQDRDTGTVHLNELGNTQN R I S D R D 1 1 0 1 0 2 1 0 0 1 3 0 1 0 1 1 0 0 0 0 0 0 13 0 1512.797 Q2NL82;I3L1Q5 Q2NL82 94 106 TSR1 Pre-rRNA-processing protein TSR1 homolog yes no 2 0.026702 79.07 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 319300 319300 0 319300 319300 0 0 0 0 5946 1529 6081 21632 32662 32662 1 ISLPLPNFSSLNLR EIATYRKLLEGEESRISLPLPNFSSLNLRE RISLPLPNFSSLNLRETNLDSLPLVDTHSK R I S L R E 0 1 2 0 0 0 0 0 0 1 4 0 0 1 2 3 0 0 0 0 0 0 14 0 1569.8879 V9HWE1;P08670;B0YJC4;Q53HU8 V9HWE1 411 424 HEL113;VIM Vimentin yes no 2 3.2525E-68 224.58 7 1 0.65083 0.89122 32.419 7 Median 0.64719 0.88333 2.973 6 0 Median 1.2635 2.0804 NaN 1 0 Median 1093200000 637690000 455540000 1025700000 607480000 418180000 67577000 30212000 37365000 5947 1245 6082 21633;21634;21635;21636;21637;21638;21639;21640 32663;32664;32665;32666;32667;32668;32669;32670;32671;32672;32673;32674;32675;32676;32677 32669 15 ISLQAIQQLVR QELQRKFHEAQLSEKISLQAIQQLVRKSYQ LSEKISLQAIQQLVRKSYQALALWKLLCEH K I S V R K 1 1 0 0 0 3 0 0 0 2 2 0 0 0 0 1 0 0 0 1 0 0 11 0 1267.7612 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 738 748 NUP155 Nuclear pore complex protein Nup155 yes no 2 1.1126E-13 183.43 5 1 0.27744 0.37944 23.404 4 Median 0.27744 0.37944 23.404 4 0 Median NaN NaN NaN 0 0 Median 35623000 21768000 13855000 29504000 21768000 7736200 6119000 0 6119000 5948 29 6083 21641;21642;21643;21644;21645;21646 32678;32679;32680;32681;32682;32683;32684;32685 32678 8 ISLSTLQQQLGQPEK YGKVVDLAPLHLDARISLSTLQQQLGQPEK ISLSTLQQQLGQPEKALEALEPMYDPDTLA R I S E K A 0 0 0 0 0 4 1 1 0 1 3 1 0 0 1 2 1 0 0 0 0 0 15 0 1668.9046 Q9Y5Q9;H7C0C0 Q9Y5Q9 494 508 GTF3C3 General transcription factor 3C polypeptide 3 yes no 2 1.6763E-13 145.81 4 2 0.88261 1.3364 8.4106 2 Median NaN NaN NaN 0 0 Median 0.88261 1.3364 8.4106 2 0 Median 42642000 24042000 18600000 7188800 7188800 0 35453000 16853000 18600000 5949 1831 6084 21647;21648;21649;21650;21651;21652 32686;32687;32688;32689;32690;32691;32692;32693 32687 8 ISNDNPEEHVLK ESGSPFDPVFEVEPKISNDNPEEHVLKVIP EPKISNDNPEEHVLKVIPEDASESEEKLDQ K I S L K V 0 0 2 1 0 0 2 0 1 1 1 1 0 0 1 1 0 0 0 1 0 0 12 0 1393.6838 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 903 914 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.0051716 104.07 2 0.68276 0.87637 NaN 1 Median 0.68276 0.87637 NaN 1 0 Median NaN NaN NaN 0 0 Median 5082400 2571000 2511400 5082400 2571000 2511400 0 0 0 5950 729 6085 21653;21654 32694;32695 32694 2 ISNFLLEK FEIQFSPGGEPDGGKISNFLLEKSRVVMRN GEPDGGKISNFLLEKSRVVMRNPGERSFHI K I S E K S 0 0 1 0 0 0 1 0 0 1 2 1 0 1 0 1 0 0 0 0 0 0 8 0 962.54368 Q4KMR3;Q12965;Q6ZNI9;O00160;H0YLJ4;B0I1T1;Q4LE34;Q14779;B4DVP3;Q92827 Q4KMR3 189 196 MYO1E;FLJ00395;MYO1F;MYO1F variant protein Unconventional myosin-Ie;Unconventional myosin-If yes no 2 0.012625 98.629 1 0.54261 0.70464 NaN 1 Median 0.54261 0.70464 NaN 1 0 Median NaN NaN NaN 0 0 Median 7352400 4535100 2817400 7352400 4535100 2817400 0 0 0 5951 1459 6086 21655 32696;32697 32697 2 ISNLIVLHLR APKASLRLGFSEYCRISNLIVLHLRKVEEE SEYCRISNLIVLHLRKVEEEEDESALKRSE R I S L R K 0 1 1 0 0 0 0 0 1 2 3 0 0 0 0 1 0 0 0 1 0 0 10 0 1176.7343 Q4ZG57;Q14566;B4DRF6 Q4ZG57 687 696 MCM6 DNA replication licensing factor MCM6 yes no 3 0.020735 42.395 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4171700 4171700 0 4171700 4171700 0 0 0 0 5952 1488 6087 21656 32698 32698 1 ISNPTEFQNHEK VRVDPDSQQNHSEIKISNPTEFQNHEKQES EIKISNPTEFQNHEKQESQDLRATAKVPSP K I S E K Q 0 0 2 0 0 1 2 0 1 1 0 1 0 1 1 1 1 0 0 0 0 0 12 0 1442.679 Q9BXS6 Q9BXS6 110 121 NUSAP1 Nucleolar and spindle-associated protein 1 yes yes 2 0.01128 91.469 1 1 0.31187 0.43738 NaN 1 Median NaN NaN NaN 0 0 Median 0.31187 0.43738 NaN 1 0 Median 3923300 2820700 1102600 0 0 0 3923300 2820700 1102600 5953 1723 6088 21657;21658 32699;32700 32700 2 ISNQVDLSNVCAQYR EKERMLRESLKEYQKISNQVDLSNVCAQYR ISNQVDLSNVCAQYRQVRFYEGVVELSLTA K I S Y R Q 1 1 2 1 1 2 0 0 0 1 1 0 0 0 0 2 0 0 1 2 0 0 15 0 1765.8417 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 869 883 NUP155 Nuclear pore complex protein Nup155 yes no 2 7.8875E-09 132.86 4 0.32364 0.43122 NaN 1 Median 0.32364 0.43122 NaN 1 0 Median NaN NaN NaN 0 0 Median 8191400 6125800 2065600 8191400 6125800 2065600 0 0 0 5954 29 6089 21659;21660;21661;21662 32701;32702;32703;32704;32705 32703 5 ISNTAISISDHTALAQFCK VLVAPGNAGTACSEKISNTAISISDHTALA AISISDHTALAQFCKEKKIEFVVVGPEAPL K I S C K E 3 0 1 1 1 1 0 0 1 3 1 1 0 1 0 3 2 0 0 0 0 0 19 0 2076.031 Q3B7A7;Q59HH3;P22102;Q15374;F8WD69;C9JBJ1;C9JTV6;C9JZG2;C9JKQ7 Q3B7A7 45 63 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 3 2.4392E-39 137.61 3 0.21656 0.27152 6.2267 2 Median 0.21656 0.27152 6.2267 2 0 Median NaN NaN NaN 0 0 Median 51634000 42052000 9582200 51634000 42052000 9582200 0 0 0 5955 1289 6090 21663;21664;21665 32706;32707;32708 32707 3 ISPGGISQILDLVK HSDPELLKQKLQSYKISPGGISQILDLVKG KISPGGISQILDLVKGTHYQVACQKYFEMI K I S V K G 0 0 0 1 0 1 0 2 0 3 2 1 0 0 1 2 0 0 0 1 0 0 14 0 1438.8395 A8K7A0;P49643 A8K7A0 403 416 PRIM2 DNA primase large subunit yes no 2 1.2959E-09 99.5 1 0.35725 0.45235 NaN 1 Median 0.35725 0.45235 NaN 1 0 Median NaN NaN NaN 0 0 Median 2707700 2117700 589960 2707700 2117700 589960 0 0 0 5956 631 6091 21666 32709 32709 1 ISPIQKPQGLDPVEILQER GQPSPVLQLQQKQSRISPIQKPQGLDPVEI QKPQGLDPVEILQEREYRLQARIAHRIQEL R I S E R E 0 1 0 1 0 3 2 1 0 3 2 1 0 0 3 1 0 0 0 1 0 0 19 1 2159.195 P51531;A0A0U1RQZ9;F6VDE0;A0A0U1RRJ8 P51531 328 346 SMARCA2 Probable global transcription activator SNF2L2 yes no 3 0.042566 11.925 1 0.81826 1.0389 NaN 1 Median 0.81826 1.0389 NaN 1 0 Median NaN NaN NaN 0 0 Median 4361900 1942700 2419200 4361900 1942700 2419200 0 0 0 5957 1362 6092 21667 32710 32710 1 ISPLQFR VTTVTEIGKDVIGLRISPLQFR________ GKDVIGLRISPLQFR_______________ R I S F R - 0 1 0 0 0 1 0 0 0 1 1 0 0 1 1 1 0 0 0 0 0 0 7 0 859.49159 P53621 P53621 1218 1224 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.033145 60.294 1 0.52918 0.71679 NaN 1 Median 0.52918 0.71679 NaN 1 0 Median NaN NaN NaN 0 0 Median 8209000 5336800 2872100 8209000 5336800 2872100 0 0 0 5958 1371 6093 21668 32711 32711 1 ISQSNYIPTQQDVLR QLNDSASYYLNDLDRISQSNYIPTQQDVLR ISQSNYIPTQQDVLRTRVKTTGIVETHFTF R I S L R T 0 1 1 1 0 3 0 0 0 2 1 0 0 0 1 2 1 0 1 1 0 0 15 0 1760.9057 P08754 P08754 162 176 GNAI3 Guanine nucleotide-binding protein G(k) subunit alpha yes yes 2 0.0080784 71.888 1 0.63328 0.90569 NaN 1 Median 0.63328 0.90569 NaN 1 0 Median NaN NaN NaN 0 0 Median 2682000 1436400 1245600 2682000 1436400 1245600 0 0 0 5959 1246 6094 21669 32712 32712 0 ISSFRPVEDITEEDLENVAITVR KTIGGKCREYRRRHRISSFRPVEDITEEDL DITEEDLENVAITVRDKIYDKVLGNTCHQC R I S V R D 1 2 1 2 0 0 4 0 0 3 1 0 0 1 1 2 2 0 0 3 0 0 23 1 2631.3392 A8K8X5;A0A024RA51;Q96GN5 A8K8X5 319 341 CDCA7L Cell division cycle-associated 7-like protein yes no 3 7.5466E-20 131.33 2 1.3583 1.8517 NaN 1 Median 1.3583 1.8517 NaN 1 0 Median NaN NaN NaN 0 0 Median 7254100 1669000 5585100 7254100 1669000 5585100 0 0 0 5960 236 6095 21670;21671 32713;32714 32713 2 ISSIQSIVPALEIANAHR KCEFQDAYVLLSEKKISSIQSIVPALEIAN IQSIVPALEIANAHRKPLVIIAEDVDGEAL K I S H R K 3 1 1 0 0 1 1 0 1 4 1 0 0 0 1 3 0 0 0 1 0 0 18 0 1918.0636 B7Z5E7;B7Z4F6;B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z532;Q53QD5 B7Z5E7 195 212 HSPD1 60 kDa heat shock protein, mitochondrial yes no 3 0.017744 21.773 1 0.39587 0.52353 NaN 1 Median 0.39587 0.52353 NaN 1 0 Median NaN NaN NaN 0 0 Median 10232000 7510400 2722000 10232000 7510400 2722000 0 0 0 5961 110 6096 21672 32715 32715 1 ISSLLAELEAIQR FFKMELFEGMRESTKISSLLAELEAIQRNS TKISSLLAELEAIQRNSASQKSVIVSQWTN K I S Q R N 2 1 0 0 0 1 2 0 0 2 3 0 0 0 0 2 0 0 0 0 0 0 13 0 1441.814 A0A024R0F1;Q9UNY4 A0A024R0F1 993 1005 TTF2 Transcription termination factor 2 yes no 2 6.3494E-78 260.98 4 2 0.82994 1.337 9.1479 6 Linear 0.94204 1.1163 6.9972 4 0 Linear 0.83632 1.3053 6.3738 2 0 Median 108440000 59187000 49257000 56907000 30116000 26791000 51537000 29071000 22466000 5962 33 6097 21673;21674;21675;21676;21677;21678 32716;32717;32718;32719;32720;32721;32722;32723;32724;32725;32726 32717 11 ISSLLEEQFQQGK KKIQKKYDERKKNAKISSLLEEQFQQGKLL AKISSLLEEQFQQGKLLACIASRPGQCGRA K I S G K L 0 0 0 0 0 3 2 1 0 1 2 1 0 1 0 2 0 0 0 0 0 0 13 0 1505.7726 Q5JR94;P62241;Q5JR95;Q9BS10 Q5JR94 158 170 RPS8 40S ribosomal protein S8 yes no 2 2.3613E-164 308.21 13 3 0.87404 1.1249 56.116 7 Median 0.90481 1.2012 4.0678 4 0 Median 0.28633 0.44158 14.014 3 0 Median 5581100000 3344000000 2237100000 4004400000 2146600000 1857800000 1576600000 1197300000 379290000 5963 1399 6098 21679;21680;21681;21682;21683;21684;21685;21686;21687;21688;21689;21690;21691;21692;21693;21694 32727;32728;32729;32730;32731;32732;32733;32734;32735;32736;32737;32738;32739;32740;32741;32742;32743;32744;32745;32746;32747;32748;32749;32750;32751;32752;32753;32754;32755;32756;32757;32758;32759;32760;32761;32762;32763;32764;32765;32766;32767 32738 41 ISSQQNPNSNTLGHILCVIGHIAK SPRLDYSRIIQSWEKISSQQNPNSNTLGHI NTLGHILCVIGHIAKHLPKSTRDKVTDAVK K I S A K H 1 0 3 0 1 2 0 2 2 4 2 1 0 0 1 3 1 0 0 1 0 0 24 0 2600.3493 P42695;G3V1A9;E9PKK4 P42695 744 767 NCAPD3 Condensin-2 complex subunit D3 yes no 4 2.2392E-20 88.09 1 0.70646 0.87733 NaN 1 Median 0.70646 0.87733 NaN 1 0 Median NaN NaN NaN 0 0 Median 51374000 28563000 22812000 51374000 28563000 22812000 0 0 0 5964 1338 6099 21695 32768;32769 32769 2 ISSTPTTETIR LLNVSTPKSTRRSGRISSTPTTETIRGIDS RSGRISSTPTTETIRGIDSDDVQDNSQLKA R I S I R G 0 1 0 0 0 0 1 0 0 2 0 0 0 0 1 2 4 0 0 0 0 0 11 0 1204.6299 Q96QE3;H0UIC2;A0A075B754 Q96QE3 600 610 ATAD5 ATPase family AAA domain-containing protein 5 yes no 2 0.051 34.755 1 1.2403 1.7297 NaN 1 Median NaN NaN NaN 0 0 Median 1.2403 1.7297 NaN 1 0 Median 8837700 4443300 4394400 0 0 0 8837700 4443300 4394400 5965 1698 6100 21696 32770 32770 1 ISSVLAGGSCR GSCGIGGGIGGGSSRISSVLAGGSCRAPST GSSRISSVLAGGSCRAPSTYGGGLSVSSSR R I S C R A 1 1 0 0 1 0 0 2 0 1 1 0 0 0 0 3 0 0 0 1 0 0 11 0 1105.555 CON__P02533;P02533;K7ENV3;CON__P08779;P08779 CON__P02533 31 41 KRT14;KRT16 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16 no no 2 0.0013927 91.584 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13187000 13187000 0 13187000 13187000 0 0 0 0 + 5966 949;958 6101 21697 32771 32771 1 ISSVQFHPGAQIVMVAGLDNAVSLFQVDGK KNCQHANAERPTVARISSVQFHPGAQIVMV AGLDNAVSLFQVDGKTNPKIQSIYLERFPI R I S G K T 3 0 1 2 0 3 0 3 1 2 2 1 1 2 1 3 0 0 0 5 0 0 30 0 3126.6172 Q9Y5J1;B2RAX6 Q9Y5J1 254 283 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 3 5.1414E-18 88.481 4 1.0912 1.4011 4.3839 2 Median 1.0912 1.4011 4.3839 2 0 Median NaN NaN NaN 0 0 Median 19762000 9266000 10496000 19762000 9266000 10496000 0 0 0 5967 1830 6102;6103 21698;21699;21700;21701 32772;32773;32774;32775;32776 32775 860 5 ISTHVSFPLEGLDLQPFLAK IHLKRFRHELMFSTKISTHVSFPLEGLDLQ SFPLEGLDLQPFLAKDSPAQIVTYDLLSVI K I S A K D 1 0 0 1 0 1 1 1 1 1 4 1 0 2 2 2 1 0 0 1 0 0 20 0 2211.194 H0YD08;H0YCV3;Q8TEY7 H0YD08 46 65 USP33 Ubiquitin carboxyl-terminal hydrolase 33 yes no 3 4.5874E-05 47.752 1 0.57837 0.73948 NaN 1 Median 0.57837 0.73948 NaN 1 0 Median NaN NaN NaN 0 0 Median 4088000 2557600 1530400 4088000 2557600 1530400 0 0 0 5968 1098 6104 21702 32777;32778 32778 2 ISTINILLSTLK EFIPCIFSSGIKEDRISTINILLSTLKTKV EDRISTINILLSTLKTKVVHNKNITKTQKV R I S L K T 0 0 1 0 0 0 0 0 0 3 3 1 0 0 0 2 2 0 0 0 0 0 12 0 1314.8123 O60287 O60287 237 248 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 2.4731E-05 134.57 4 0.79578 0.97859 15.165 4 Linear 0.79578 0.97859 15.165 4 0 Linear NaN NaN NaN 0 0 Median 37792000 22232000 15560000 37792000 22232000 15560000 0 0 0 5969 1190 6105 21703;21704;21705;21706 32779;32780;32781;32782;32783;32784;32785;32786 32786 8 ISTLPQLNSALVQDLAK HMTVKNKYATSKHAKISTLPQLNSALVQDL TLPQLNSALVQDLAKAVAKV__________ K I S A K A 2 0 1 1 0 2 0 0 0 1 4 1 0 0 1 2 1 0 0 1 0 0 17 0 1810.02 P14635 P14635 412 428 CCNB1 G2/mitotic-specific cyclin-B1 yes yes 2 1.2674E-42 194.98 4 2 0.92311 1.2105 10.654 6 Median 0.92754 1.2002 3.4074 4 0 Median 0.91633 1.4486 1.3197 2 0 Median 489020000 249360000 239670000 244700000 127760000 116950000 244320000 121600000 122720000 5970 1268 6106 21707;21708;21709;21710;21711;21712 32787;32788;32789;32790;32791;32792;32793;32794;32795;32796;32797;32798;32799;32800 32791 14 ISVATGALEAAQGSK DARRACAAGTPAVIRISVATGALEAAQGSK ISVATGALEAAQGSKSQCQTRQTSATSTTM R I S S K S 4 0 0 0 0 1 1 2 0 1 1 1 0 0 0 2 1 0 0 1 0 0 15 0 1401.7464 A6NEM2;P51610 A6NEM2 1149 1163 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 4.4855E-06 122.46 3 1 0.6792 0.87953 15.062 2 Median 0.6792 0.87953 15.062 2 0 Median NaN NaN NaN 0 0 Median 8416500 5373700 3042900 6837900 3795000 3042900 1578700 1578700 0 5971 564 6107 21713;21714;21715;21716 32801;32802;32803;32804;32805 32802 5 ISVDITLALESK KRGGSPAVTLLISEKISVDITLALESKSSW SEKISVDITLALESKSSWPASTQEGLRIQN K I S S K S 1 0 0 1 0 0 1 0 0 2 2 1 0 0 0 2 1 0 0 1 0 0 12 0 1287.7286 Q8N884 Q8N884 316 327 MB21D1 Cyclic GMP-AMP synthase yes yes 2 4.2109E-10 118.28 2 2 0.94145 1.2791 7.0418 4 Median 0.98622 1.2089 4.0754 2 0 Median 0.90289 1.3485 3.5575 2 0 Median 90824000 43629000 47195000 73568000 32925000 40642000 17257000 10704000 6552900 5972 1643 6108 21717;21718;21719;21720 32806;32807;32808;32809;32810;32811;32812;32813 32807 8 ISVFRPGLR VYQLGDVSQKTTWHRISVFRPGLRDVAYQY KTTWHRISVFRPGLRDVAYQYVKKRSRIYL R I S L R D 0 2 0 0 0 0 0 1 0 1 1 0 0 1 1 1 0 0 0 1 0 0 9 1 1043.624 Q567R6;A4D1U3;Q04837;C9K0U8;A0A0G2JLD8;E7EUY5;B7Z268 Q567R6 87 95 SSBP1 Single-stranded DNA-binding protein;Single-stranded DNA-binding protein, mitochondrial yes no 3 0.015657 33.378 2 0.92499 1.3979 5.51 2 Median NaN NaN NaN 0 0 Median 0.92499 1.3979 5.51 2 0 Median 43561000 20885000 22676000 0 0 0 43561000 20885000 22676000 5973 550 6109 21721;21722 32814;32815 32814 2 ISVLYSFLR ATLEQNYIVCELQQKISVLYSFLRSHLKKK CELQQKISVLYSFLRSHLKKKSIVFFSSCK K I S L R S 0 1 0 0 0 0 0 0 0 1 2 0 0 1 0 2 0 0 1 1 0 0 9 0 1096.6281 Q13206;Q86VR6;E9PIF2;Q59EC7;B4DKX3 Q13206 301 309 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 2 0.0031617 79.906 1 1.248 1.6582 NaN 1 Median 1.248 1.6582 NaN 1 0 Median NaN NaN NaN 0 0 Median 2322300 1035400 1286900 2322300 1035400 1286900 0 0 0 5974 1466 6110 21723 32816 32816 1 ISVYYNEATGGK PTGTYHGDSDLQLDRISVYYNEATGGKYVP LDRISVYYNEATGGKYVPRAILVDLEPGTM R I S G K Y 1 0 1 0 0 0 1 2 0 1 0 1 0 0 0 1 1 0 2 1 0 0 12 0 1300.6299 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;B4DMU8;B4DMJ5 Q5JP53 29 40 TUBB Tubulin beta chain yes no 2 3.2799E-25 202.44 4 2 0.43527 0.57503 128.81 6 Median 0.42273 0.5597 4.8463 4 0 Median 4.2517 6.7172 0.11108 2 0 Median 1293500000 752280000 541230000 968750000 690010000 278740000 324760000 62270000 262490000 5975 1241 6111 21724;21725;21726;21727;21728;21729 32817;32818;32819;32820;32821;32822;32823;32824;32825;32826;32827;32828 32820 12 ISWVGEAVK KKMHQGKKKKQNKNRISWVGEAVKTDGKKS KQNKNRISWVGEAVKTDGKKSYYKKVCIDA R I S V K T 1 0 0 0 0 0 1 1 0 1 0 1 0 0 0 1 0 1 0 2 0 0 9 0 987.53893 A0A024R7E3;P26358;Q59FP7;I6L9H2 A0A024R7E3 793 801 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 no no 2 0.048128 40.002 1 0.66353 0.89097 NaN 1 Median NaN NaN NaN 0 0 Median 0.66353 0.89097 NaN 1 0 Median 3164400 2009200 1155100 0 0 0 3164400 2009200 1155100 5976 176;1129 6112 21730 32829 32829 1 ISYSGQFLVK SVTPADLEKVFAEHKISYSGQFLVKSGYAF FAEHKISYSGQFLVKSGYAFVDCPDEHWAM K I S V K S 0 0 0 0 0 1 0 1 0 1 1 1 0 1 0 2 0 0 1 1 0 0 10 0 1140.6179 Q9NZI8 Q9NZI8 27 36 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 0.0026771 106.68 1 0.59867 0.77027 NaN 1 Median 0.59867 0.77027 NaN 1 0 Median NaN NaN NaN 0 0 Median 4307500 2477100 1830400 4307500 2477100 1830400 0 0 0 5977 1772 6113 21731 32830 32830 1 ISYVQDENRDPIR MPKTPSQKNRRKKRRISYVQDENRDPIRRR RRISYVQDENRDPIRRRLSRRKSRSSQLSS R I S I R R 0 2 1 2 0 1 1 0 0 2 0 0 0 0 1 1 0 0 1 1 0 0 13 1 1603.7954 Q9NQS7;B3KPD3;E9PM67 Q9NQS7 71 83 INCENP Inner centromere protein yes no 2;3 2.5518E-05 88.134 6 2 0.81515 1.1628 10.329 8 Median 0.86648 1.1764 12.041 6 0 Median 0.71866 1.1559 4.6578 2 0 Median 556730000 305640000 251100000 386010000 208560000 177450000 170730000 97079000 73649000 5978 1752 6114 21732;21733;21734;21735;21736;21737;21738;21739 32831;32832;32833;32834;32835;32836;32837;32838;32839;32840;32841;32842;32843;32844;32845 32839 15 ISYVQDENRDPIRR MPKTPSQKNRRKKRRISYVQDENRDPIRRR RISYVQDENRDPIRRRLSRRKSRSSQLSSR R I S R R R 0 3 1 2 0 1 1 0 0 2 0 0 0 0 1 1 0 0 1 1 0 0 14 2 1759.8965 Q9NQS7;B3KPD3;E9PM67 Q9NQS7 71 84 INCENP Inner centromere protein yes no 3;4 0.0001076 78.964 5 1 0.83067 1.0421 16.965 6 Median 0.85805 1.0459 5.7129 5 0 Median 0.60568 0.7095 NaN 1 0 Median 240950000 129880000 111080000 233990000 125710000 108280000 6968200 4168000 2800200 5979 1752 6115 21740;21741;21742;21743;21744;21745 32846;32847;32848;32849;32850;32851;32852;32853 32853 8 ITAFVPNDGCLNFIEENDEVLVAGFGRK IRKCVRVQLIKNGKKITAFVPNDGCLNFIE IEENDEVLVAGFGRKGHAVGDIPGVRFKVV K I T R K G 2 1 3 2 1 0 3 3 0 2 2 1 0 3 1 0 1 0 0 3 0 0 28 1 3123.5335 A8K517;P62266;D6RD47 A8K517 81 108 RPS23 40S ribosomal protein S23 yes no 3 0.0042591 38.746 2 0.93583 1.2305 3.2936 2 Median 0.93583 1.2305 3.2936 2 0 Median NaN NaN NaN 0 0 Median 144970000 77754000 67219000 144970000 77754000 67219000 0 0 0 5980 611 6116 21746;21747 32854;32855 32854 2 ITALDEFATK KHEDFEKSLSAQEEKITALDEFATKLIQNN AQEEKITALDEFATKLIQNNHYAMEDVATR K I T T K L 2 0 0 1 0 0 1 0 0 1 1 1 0 1 0 0 2 0 0 0 0 0 10 0 1107.5812 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 523 532 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.0019605 91.265 4 0.90047 1.1343 4.1023 4 Median 0.90047 1.1343 4.1023 4 0 Median NaN NaN NaN 0 0 Median 38950000 20691000 18259000 38950000 20691000 18259000 0 0 0 5981 1476 6117 21748;21749;21750;21751 32856;32857;32858;32859;32860;32861 32861 6 ITAQQITTPGAQQK IQPQAAQGPAAVQQKITAQQITTPGAQQKV KITAQQITTPGAQQKVAYAAQPALKTQFLT K I T Q K V 2 0 0 0 0 4 0 1 0 2 0 1 0 0 1 0 3 0 0 0 0 0 14 0 1483.7995 Q96L91;A0A0A0MR70 Q96L91 2995 3008 EP400 E1A-binding protein p400 yes no 2 0.0096285 38.783 2 1.1559 1.5359 5.3725 2 Median NaN NaN NaN 0 0 Median 1.1559 1.5359 5.3725 2 0 Median 4202700 1941600 2261100 0 0 0 4202700 1941600 2261100 5982 1692 6118 21752;21753 32862;32863 32862 2 ITCLCQVPQNAANR QTSAMLFTVDNEAGKITCLCQVPQNAANRG KITCLCQVPQNAANRGLKASEWVQQVSGLM K I T N R G 2 1 2 0 2 2 0 0 0 1 1 0 0 0 1 0 1 0 0 1 0 0 14 0 1643.7872 P49588 P49588 899 912 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 7.0017E-11 152.54 2 0.4816 0.68299 NaN 1 Median 0.4816 0.68299 NaN 1 0 Median NaN NaN NaN 0 0 Median 5626600 4735700 890970 5626600 4735700 890970 0 0 0 5983 1352 6119 21754;21755 32864;32865;32866 32865 3 ITDFIK IKVNDTIQIDLETGKITDFIKFDTGNLCMV IQIDLETGKITDFIKFDTGNLCMVTGGANL K I T I K F 0 0 0 1 0 0 0 0 0 2 0 1 0 1 0 0 1 0 0 0 0 0 6 0 735.41669 B2R491;P62701;Q96IR1;Q53HV1 B2R491 169 174 RPS4X 40S ribosomal protein S4;40S ribosomal protein S4, X isoform yes no 2 0.039631 109.7 1 0.90318 1.1971 NaN 1 Median 0.90318 1.1971 NaN 1 0 Median NaN NaN NaN 0 0 Median 162720000 71631000 91092000 162720000 71631000 91092000 0 0 0 5984 681 6120 21756 32867 32867 1 ITDGLHALQEASNK EDSKTLAAKEKEVKKITDGLHALQEASNKD KITDGLHALQEASNKDAEALAAAQQHFNAV K I T N K D 2 0 1 1 0 1 1 1 1 1 2 1 0 0 0 1 1 0 0 0 0 0 14 0 1495.7631 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 355 368 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2;3 4.0179E-33 201.38 5 3 0.69431 0.91538 6.4749 8 Median 0.71628 0.91293 4.3926 5 0 Median 0.64802 1.0448 7.3538 3 0 Plateau 226320000 133740000 92578000 122690000 70235000 52460000 103620000 63505000 40118000 5985 50 6121 21757;21758;21759;21760;21761;21762;21763;21764 32868;32869;32870;32871;32872;32873;32874;32875;32876;32877;32878;32879 32869 12 ITDLYTDLRDGR FTKWVNSHLARVSCRITDLYTDLRDGRMLI SCRITDLYTDLRDGRMLIKLLEVLSGERLP R I T G R M 0 2 0 3 0 0 0 1 0 1 2 0 0 0 0 0 2 0 1 0 0 0 12 1 1436.726 B2ZZ89;A0A087WUZ3;Q01082;K9MS24;F8W6C1 B2ZZ89 75 86 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 0.026923 53.013 2 0.65243 0.8863 19.799 2 Median 0.65243 0.8863 19.799 2 0 Median NaN NaN NaN 0 0 Median 26604000 16407000 10197000 26604000 16407000 10197000 0 0 0 5986 346 6122 21765;21766 32880;32881 32881 2 ITDQEASENHVAATGSHLCVLR EVMDAGCQESAGPERITDQEASENHVAATG ENHVAATGSHLCVLRSRKLLKQLSAWCGPS R I T L R S 3 1 1 1 1 1 2 1 2 1 2 0 0 0 0 2 2 0 0 2 0 0 22 0 2407.155 Q96F88;Q99575 Q96F88 786 807 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 4 0.017657 40.996 1 0.43838 0.60241 NaN 1 Median 0.43838 0.60241 NaN 1 0 Median NaN NaN NaN 0 0 Median 6853500 4701500 2152000 6853500 4701500 2152000 0 0 0 5987 1685 6123 21767 32882 32882 1 ITDVIIGFQACCR RAGVLAHLEEERDLKITDVIIGFQACCRGY LKITDVIIGFQACCRGYLARKAFAKRQQQL K I T C R G 1 1 0 1 2 1 0 1 0 3 0 0 0 1 0 0 1 0 0 1 0 0 13 0 1551.7538 A0A024R1N1;P35579;Q86XU5;B4E3S1;A0A0U4BW16 A0A024R1N1 779 791 MYH9 Myosin-9 no no 2 1.8236E-29 200.56 4 0.85489 1.1575 6.4801 4 Median 0.85489 1.1575 6.4801 4 0 Median NaN NaN NaN 0 0 Median 100820000 49195000 51629000 100820000 49195000 51629000 0 0 0 5988 61;490 6124 21768;21769;21770;21771 32883;32884;32885;32886;32887;32888;32889 32887 7 ITEAIGIISK MLVQYLQDAYSFSRKITEAIGIISKMMYEN SFSRKITEAIGIISKMMYENTTTVVQEVIE K I T S K M 1 0 0 0 0 0 1 1 0 4 0 1 0 0 0 1 1 0 0 0 0 0 10 0 1043.6227 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 634 643 NCAPD2 Condensin complex subunit 1 yes no 2 0.0023385 71.349 2 2 0.53884 0.7535 8.9864 4 Median 0.63676 0.81025 13.509 2 0 Median 0.4921 0.7535 2.6556 2 0 Median 75496000 50429000 25067000 28180000 18615000 9564700 47316000 31814000 15502000 5989 757 6125 21772;21773;21774;21775 32890;32891;32892;32893;32894;32895;32896;32897 32896 8 ITEDFIATYQANYGFSNDGASSSTANVEDVHAR TPYEWDLDKKAWFPKITEDFIATYQANYGF GASSSTANVEDVHARTAEEPPQEKAPEPTD K I T A R T 5 1 3 3 0 1 2 2 1 2 0 0 0 2 0 4 3 0 2 2 0 0 33 0 3549.592 O43719;B4DRS4;Q5H919;Q5H918 O43719 63 95 HTATSF1 HIV Tat-specific factor 1 yes no 3 0.0012493 55.984 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3203100 3203100 0 3203100 3203100 0 0 0 0 5990 1187 6126 21776 32898 32898 1 ITEELNLR CERPLTQEELLREAKITEELNLRSLETYER ELLREAKITEELNLRSLETYERLEADKKKQ K I T L R S 0 1 1 0 0 0 2 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 8 0 986.53966 Q15906;B4DMP5 Q15906 178 185 VPS72 Vacuolar protein sorting-associated protein 72 homolog yes no 2 0.020355 57.177 1 0.603 0.81957 NaN 1 Median 0.603 0.81957 NaN 1 0 Median NaN NaN NaN 0 0 Median 9198400 5839700 3358700 9198400 5839700 3358700 0 0 0 5991 1518 6127 21777 32899 32899 1 ITEGDVVVGIASSGLHSNGFSLVR VGAMERDQKLPHLERITEGDVVVGIASSGL IASSGLHSNGFSLVRKIVAKSSLQYSSPAP R I T V R K 1 1 1 1 0 0 1 4 1 2 2 0 0 1 0 4 1 0 0 4 0 0 24 0 2413.2601 Q3B7A7;Q59HH3;P22102;B4DJ93 Q3B7A7 605 628 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 3 0.013989 18.248 1 0.39109 0.55547 NaN 1 Median 0.39109 0.55547 NaN 1 0 Median NaN NaN NaN 0 0 Median 5606100 3879900 1726200 5606100 3879900 1726200 0 0 0 5992 1289 6128 21778 32900 32900 1 ITENSIVENLK NVKHSGVDDMVLLSKITENSIVENLKKRYM LLSKITENSIVENLKKRYMDDYIFTYIGSV K I T L K K 0 0 2 0 0 0 2 0 0 2 1 1 0 0 0 1 1 0 0 1 0 0 11 0 1258.6769 Q4KMR3;Q12965;H0YN00 Q4KMR3 30 40 MYO1E Unconventional myosin-Ie yes no 2 0.0016062 68.657 1 0.54943 0.69812 NaN 1 Median 0.54943 0.69812 NaN 1 0 Median NaN NaN NaN 0 0 Median 12490000 7503200 4986300 12490000 7503200 4986300 0 0 0 5993 1459 6129 21779 32901 32901 1 ITEQLIEAINNGDFEAYTK TEDEDLKVRKQEIIKITEQLIEAINNGDFE LIEAINNGDFEAYTKICDPGLTSFEPEALG K I T T K I 2 0 2 1 0 1 3 1 0 3 1 1 0 1 0 0 2 0 1 0 0 0 19 0 2168.0637 Q5SWX3;A8K6N9;A0A0A0MS52;A0A0A0MT11;Q13555;Q8WU40;B3KY86;H0Y6G2;Q13280;Q59FI6 Q5SWX3 391 409 CAMK2G Calcium/calmodulin-dependent protein kinase type II subunit gamma yes no 2 1.4828E-08 136.33 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2675500 2675500 0 2675500 2675500 0 0 0 0 5994 393 6130 21780;21781 32902;32903;32904 32902 3 ITESEEVVSR RVRSLETENAGLRLRITESEEVVSREVSGI GLRLRITESEEVVSREVSGIKAAYEAELGD R I T S R E 0 1 0 0 0 0 3 0 0 1 0 0 0 0 0 2 1 0 0 2 0 0 10 0 1147.5721 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;W5X314 P02545 63 72 LMNA Prelamin-A/C;Lamin-A/C yes no 2 6.5176E-07 126.24 3 0.93591 1.2853 NaN 1 Median 0.93591 1.2853 NaN 1 0 Median NaN NaN NaN 0 0 Median 98962000 48666000 50296000 98962000 48666000 50296000 0 0 0 5995 1229 6131 21782;21783;21784 32905;32906;32907 32907 3 ITFDAFPGEPDK IEILAPPNGSVPGDRITFDAFPGEPDKELN GDRITFDAFPGEPDKELNPKKKIWEQIQPD R I T D K E 1 0 0 2 0 0 1 1 0 1 0 1 0 2 2 0 1 0 0 0 0 0 12 0 1335.6347 B4DNK3;Q12904 B4DNK3 208 219 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes no 2 0.0016891 60.434 2 1.8801 2.8125 8.0971 2 Median NaN NaN NaN 0 0 Median 1.8801 2.8125 8.0971 2 0 Median 19102000 6749200 12353000 0 0 0 19102000 6749200 12353000 5996 837 6132 21785;21786 32908;32909 32908 2 ITFHGEGDQEPGLEPGDIIIVLDQK ILEVHIDKGMKDGQKITFHGEGDQEPGLEP PGLEPGDIIIVLDQKDHAVFTRRGEDLFMC K I T Q K D 0 0 0 3 0 2 3 4 1 4 2 1 0 1 2 0 1 0 0 1 0 0 25 0 2719.3705 P31689;B7Z5C0;Q9NXZ8 P31689 222 246 DNAJA1;HDJ2 DnaJ homolog subfamily A member 1 yes no 3 1.7233E-28 116.44 4 1 0.51034 0.65046 43.988 5 Median 0.50975 0.64209 7.1811 4 0 Median 1.0563 1.6663 NaN 1 0 Median 247440000 154270000 93174000 206830000 135200000 71626000 40612000 19064000 21547000 5997 1309 6133 21787;21788;21789;21790;21791 32910;32911;32912;32913;32914;32915;32916;32917;32918;32919 32915 10 ITFLLQAIR KQAEETYENIPGQSKITFLLQAIRNTTAAE IPGQSKITFLLQAIRNTTAAEEARQMAAVL K I T I R N 1 1 0 0 0 1 0 0 0 2 2 0 0 1 0 0 1 0 0 0 0 0 9 0 1073.6597 B4E0R6;A0A024RDY0;H0Y8C6;O00410;C9JZD8;C9J875;C9JQT6;E7ESA1;E7ESZ1;E7EWK4;E7EX05;E7EQT5;E7ETV8;E7EV12;C9JMV5;E7ETV3 B4E0R6 42 50 RANBP5;IPO5 Importin-5 yes no 2 0.0054412 112.17 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 646720 646720 0 646720 646720 0 0 0 0 5998 324 6134 21792 32920 32920 1 ITFPSSQQEAQNR PVAFHVLFASSHTPRITFPSSQQEAQNRMS PRITFPSSQQEAQNRMSQMRNLIQTLVSGI R I T N R M 1 1 1 0 0 3 1 0 0 1 0 0 0 1 1 2 1 0 0 0 0 0 13 0 1504.727 E7EXA6;Q96S08;A0A0D9SF58;Q8WVB6 E7EXA6 717 729 CHTF18;RUVBL Chromosome transmission fidelity protein 18 homolog yes no 2 0.00044271 84.198 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4378100 4378100 0 4378100 4378100 0 0 0 0 5999 433 6135 21793;21794 32921;32922 32922 2 ITGEAFVQFASQELAEK IVPNGITLPVDPEGKITGEAFVQFASQELA GEAFVQFASQELAEKALGKHKERIGHRYIE K I T E K A 3 0 0 0 0 2 3 1 0 1 1 1 0 2 0 1 1 0 0 1 0 0 17 0 1866.9363 A0A024R7T3;P52597;B4DKS8 A0A024R7T3 151 167 HNRPF;HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 2 1.5347E-50 209.22 3 2 0.33946 0.42101 136.94 5 Median 0.3315 0.41794 6.2775 3 0 Median 3.0997 4.9228 0.17114 2 0 Median 297380000 150900000 146470000 155570000 116950000 38620000 141810000 33957000 107850000 6000 184 6136 21795;21796;21797;21798;21799 32923;32924;32925;32926;32927;32928;32929 32924 7 ITGNPVVTNR LAAQLKPMTPFKRTRITGNPVVTNRIEEGE FKRTRITGNPVVTNRIEEGERPDRAKGYDL R I T N R I 0 1 2 0 0 0 0 1 0 1 0 0 0 0 1 0 2 0 0 2 0 0 10 0 1069.588 B7Z700;Q5JR04;Q9HCE1;Q9H8T8 B7Z700 199 208 MOV10 Putative helicase MOV-10 yes no 2 0.023723 51.276 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6001 916 6137 21800 32930 32930 1 ITHQIVDRPGQQTSVIGR KSLCIGATYDVTDSRITHQIVDRPGQQTSV QIVDRPGQQTSVIGRCYVQPQWVFDSVNAR R I T G R C 0 2 0 1 0 3 0 2 1 3 0 0 0 0 1 1 2 0 0 2 0 0 18 1 2004.0865 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6 B5MCF9 356 373 PES1 Pescadillo homolog yes no 3 9.6623E-14 94.203 3 2 0.7652 1.0744 8.3624 5 Median 0.72231 0.96949 6.9862 3 0 Median 0.76782 1.1231 0.6821 2 0 Median 103310000 58002000 45305000 77845000 43158000 34687000 25462000 14844000 10618000 6002 735 6138 21801;21802;21803;21804;21805 32931;32932;32933;32934;32935;32936;32937;32938;32939;32940;32941 32936 11 ITIAAYLPLK LLVSYRHGHVHLSAKITIAAYLPLKAVDPS HLSAKITIAAYLPLKAVDPSSVALVTLGSS K I T L K A 2 0 0 0 0 0 0 0 0 2 2 1 0 0 1 0 1 0 1 0 0 0 10 0 1101.6798 Q8TEM1 Q8TEM1 635 644 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.00061291 86.67 3 0.56266 0.69961 14.904 3 Median 0.56266 0.69961 14.904 3 0 Median NaN NaN NaN 0 0 Median 13326000 8340800 4985400 13326000 8340800 4985400 0 0 0 6003 1661 6139 21806;21807;21808 32942;32943;32944;32945;32946 32946 5 ITISPLQELTLYNPER EGRNLKKIEQDTDTKITISPLQELTLYNPE TISPLQELTLYNPERTITVKGNVETCAKAE K I T E R T 0 1 1 0 0 1 2 0 0 2 3 0 0 0 2 1 2 0 1 0 0 0 16 0 1886.0149 O00425 O00425 310 325 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 2.6055E-42 196.7 4 0.60118 0.81457 29.661 4 Median 0.60118 0.81457 29.661 4 0 Median NaN NaN NaN 0 0 Median 52599000 32633000 19966000 52599000 32633000 19966000 0 0 0 6004 1167 6140 21809;21810;21811;21812 32947;32948;32949;32950;32951;32952;32953;32954 32948 8 ITISSLQDLTLYNPER EGRNLKKVEQDTETKITISSLQDLTLYNPE TISSLQDLTLYNPERTITVKGAIENCCRAE K I T E R T 0 1 1 1 0 1 1 0 0 2 3 0 0 0 1 2 2 0 1 0 0 0 16 0 1861.9785 Q9NZI8;D3DTW3 Q9NZI8 310 325 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 2 6.5006E-05 99.669 1 0.95393 1.3057 NaN 1 Median 0.95393 1.3057 NaN 1 0 Median NaN NaN NaN 0 0 Median 6670300 3312300 3358000 6670300 3312300 3358000 0 0 0 6005 1772 6141 21813 32955 32955 1 ITKPGSIDSNNQLFAPGGR ISKGSRPIDTSRLTKITKPGSIDSNNQLFA GSIDSNNQLFAPGGRLSWGKGSSGGSGAKP K I T G R L 1 1 2 1 0 1 0 3 0 2 1 1 0 1 2 2 1 0 0 0 0 0 19 1 1971.0174 E7EX73;B4DSI9;E9PGM1;E7EUU4;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637;Q96I65 E7EX73 909 927 EIF4G1;EIF4G1 variant protein Eukaryotic translation initiation factor 4 gamma 1 yes no 3 0.019011 22.01 1 0.30817 0.40084 NaN 1 Median 0.30817 0.40084 NaN 1 0 Median NaN NaN NaN 0 0 Median 11635000 8950900 2684000 11635000 8950900 2684000 0 0 0 6006 747 6142 21814 32956;32957 32957 2 ITLDNAYMEK SGTAEVELKKGATLKITLDNAYMEKCDENI GATLKITLDNAYMEKCDENILWLDYKNICK K I T E K C 1 0 1 1 0 0 1 0 0 1 1 1 1 0 0 0 1 0 1 0 0 0 10 0 1196.5747 V9HWB8;P14618;B4DNK4;H3BTN5;A0A024R5Z9;B4DRT3;A0A024R609;H3BQ34;H3BT25;H3BUW1;H3BTJ2 V9HWB8 142 151 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 2 0.011674 44.309 1 3.1504 4.1244 NaN 1 Median NaN NaN NaN 0 0 Median 3.1504 4.1244 NaN 1 0 Median 2525100 688400 1836700 0 0 0 2525100 688400 1836700 6007 1267 6143 21815 32958;32959 32958 530 2 ITNLTQQLEQASIVK ELEGMRRSLKEQAIKITNLTQQLEQASIVK ITNLTQQLEQASIVKKRSEDDLRQQRDVLD K I T V K K 1 0 1 0 0 3 1 0 0 2 2 1 0 0 0 1 2 0 0 1 0 0 15 0 1684.9359 P15924 P15924 1612 1626 DSP Desmoplakin yes yes 2 3.4913E-07 160.18 3 1 0.29482 0.3726 9.2393 3 Median 0.29482 0.3726 9.2393 3 0 Median NaN NaN NaN 0 0 Median 18854000 15016000 3838000 13029000 9190700 3838000 5825500 5825500 0 6008 1270 6144 21816;21817;21818;21819 32960;32961;32962;32963;32964 32960 5 ITPAHDQNDYEVGQR FDEFVDMDFGTGAVKITPAHDQNDYEVGQR ITPAHDQNDYEVGQRHGLEAISIMDSRGAL K I T Q R H 1 1 1 2 0 2 1 1 1 1 0 0 0 0 1 0 1 0 1 1 0 0 15 0 1741.802 A0A024RCN6;P26640;A0A140T936 A0A024RCN6 592 606 VARS Valine--tRNA ligase yes no 2;3 1.2369E-05 103.66 4 0.28968 0.39172 12.611 2 Median 0.28968 0.39172 12.611 2 0 Median NaN NaN NaN 0 0 Median 32121000 26370000 5750300 32121000 26370000 5750300 0 0 0 6009 297 6145 21820;21821;21822;21823 32965;32966;32967;32968;32969;32970 32967 6 ITPENLPQILLQLK SARDLDELSRYPEDKITPENLPQILLQLKR KITPENLPQILLQLKRRRTEEGPTLSYGRD K I T L K R 0 0 1 0 0 2 1 0 0 2 4 1 0 0 2 0 1 0 0 0 0 0 14 0 1618.9658 A0A0R4J2E8;A8MXP9;P43243;D6REM6;Q68D11;D6R991 A0A0R4J2E8 133 146 MATR3;DKFZp686K23100 Matrin-3 yes no 2 1.6331E-36 173.64 3 0.38952 0.48488 5.2847 3 Median 0.38952 0.48488 5.2847 3 0 Median NaN NaN NaN 0 0 Median 69043000 48472000 20571000 69043000 48472000 20571000 0 0 0 6010 445 6146 21824;21825;21826 32971;32972;32973;32974;32975;32976 32974 6 ITPSYVAFTPEGER KNGRVEIIANDQGNRITPSYVAFTPEGERL RITPSYVAFTPEGERLIGDAAKNQLTSNPE R I T E R L 1 1 0 0 0 0 2 1 0 1 0 0 0 1 2 1 2 0 1 1 0 0 14 0 1565.7726 V9HWB4;P11021;B4DEF7 V9HWB4 61 74 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 2 0.01447 44.616 2 1 0.43389 0.5726 NaN 1 Median 0.43389 0.5726 NaN 1 0 Median NaN NaN NaN 0 0 Median 16873000 14746000 2127700 11621000 9493100 2127700 5252700 5252700 0 6011 1252 6147 21827;21828;21829 32977;32978;32979 32977 3 ITPVTVK DSSSEDEPPKNQKPKITPVTVKAQTKAPPK PPKNQKPKITPVTVKAQTKAPPKPARAAPK K I T V K A 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 2 0 0 2 0 0 7 0 756.47454 B2RAU8;A0A0A0MRM9;Q14978;S4R349;S4R3C2 B2RAU8 187 193 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 2 0.025358 68.915 1 0.82895 1.0261 NaN 1 Median 0.82895 1.0261 NaN 1 0 Median NaN NaN NaN 0 0 Median 29050000 16717000 12333000 29050000 16717000 12333000 0 0 0 6012 388 6148 21830 32980 32980 1 ITQDIFQQLLK SFDIFGRTTTPQQTKITQDIFQQLLKRGFV QQTKITQDIFQQLLKRGFVLQDTVEQLRCE K I T L K R 0 0 0 1 0 3 0 0 0 2 2 1 0 1 0 0 1 0 0 0 0 0 11 0 1345.7606 A8K492;P56192;B4DF61;B4E0E9;H0YHV5 A8K492 365 375 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 7.2094E-12 166.07 3 1 0.52757 0.66772 124.99 4 Median 0.50235 0.63737 31.887 3 0 Median 4.2432 6.4164 NaN 1 0 Median 44858000 22544000 22314000 29061000 19402000 9658700 15797000 3141400 12656000 6013 602 6149 21831;21832;21833;21834 32981;32982;32983;32984 32982 4 ITQDTLYWNNYK YKPVAIQTYPILGEKITQDTLYWNNYKTPV GEKITQDTLYWNNYKTPVQIKEFGAVSKVD K I T Y K T 0 0 2 1 0 1 0 0 0 1 1 1 0 0 0 0 2 1 2 0 0 0 12 0 1557.7464 Q8TED0;D6RF65 Q8TED0 19 30 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 1.8371E-07 99.973 2 0.58632 0.88187 1.8457 2 Median NaN NaN NaN 0 0 Median 0.58632 0.88187 1.8457 2 0 Median 22989000 14880000 8108600 0 0 0 22989000 14880000 8108600 6014 1660 6150 21835;21836 32985;32986;32987 32986 3 ITQQGTDPLVLAVQSK TYIPKDSKKKKHELKITQQGTDPLVLAVQS TQQGTDPLVLAVQSKEQAEQWLKVIKEAYS K I T S K E 1 0 0 1 0 3 0 1 0 1 2 1 0 0 1 1 2 0 0 2 0 0 16 0 1696.9359 Q8N556 Q8N556 219 234 AFAP1 Actin filament-associated protein 1 yes yes 2 0.00050512 111.72 4 0.66863 0.85748 15.335 3 Median 0.66863 0.85748 15.335 3 0 Median NaN NaN NaN 0 0 Median 21900000 13742000 8158500 21900000 13742000 8158500 0 0 0 6015 1639 6151 21837;21838;21839;21840 32988;32989;32990;32991;32992;32993 32993 6 ITQSNAILR LDFPNLPYLLDGKNKITQSNAILRYIARKH LDGKNKITQSNAILRYIARKHNMCGETEEE K I T L R Y 1 1 1 0 0 1 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 0 9 0 1014.5822 Q6FGJ9;Q59EJ5;P21266;A4UJ43;A0A0A0MTN3;Q5T8R2;Q5T8R1;P46439;Q9UE37;E9PLF1;E9PHN7;A8HT81;E9PHN6;Q6ZSP8;Q5T8Q9;Q0D2I8;F6XZQ7;P28161 Q6FGJ9 74 82 GSTM3;GSTM5;GSTmu3;GSTM2 Glutathione S-transferase Mu 3;Glutathione S-transferase Mu 5;Glutathione S-transferase Mu 2 yes no 2 0.0015433 96.253 1 2 2.302 3.1822 116.47 3 Median 0.32708 0.43619 NaN 1 0 Median 2.3064 3.2774 4.1689 2 0 Median 45441000 23050000 22391000 22182000 15111000 7071200 23259000 7939000 15320000 6016 1286 6152 21841;21842;21843 32994;32995;32996 32996 3 ITQYLIR WPRFIRHKCKQRFTKITQYLIRIRKLTLKR KCKQRFTKITQYLIRIRKLTLKRQRKLVPL K I T I R I 0 1 0 0 0 1 0 0 0 2 1 0 0 0 0 0 1 0 1 0 0 0 7 0 905.53345 Q9BXY0;H0YBV6 Q9BXY0 116 122 MAK16 Protein MAK16 homolog yes no 2 0.012477 101.72 4 0.77211 1.0452 8.02 4 Median 0.77211 1.0452 8.02 4 0 Median NaN NaN NaN 0 0 Median 144210000 81818000 62390000 144210000 81818000 62390000 0 0 0 6017 1724 6153 21844;21845;21846;21847 32997;32998;32999;33000;33001;33002 33001 5 ITSEAIGQLHR YRGHTNQDHVHAVWKITSEAIGQLHRSLES AVWKITSEAIGQLHRSLESCPGETVVAEDP K I T H R S 1 1 0 0 0 1 1 1 1 2 1 0 0 0 0 1 1 0 0 0 0 0 11 0 1223.6622 A0A024R0F1;Q9UNY4 A0A024R0F1 538 548 TTF2 Transcription termination factor 2 yes no 2;3 0.0027507 55.721 3 1 0.921 1.259 10.206 2 Median 0.921 1.259 10.206 2 0 Median NaN NaN NaN 0 0 Median 65352000 35938000 29414000 64061000 35938000 28123000 1290900 0 1290900 6018 33 6154 21848;21849;21850;21851 33003;33004;33005;33006 33005 4 ITSEMGSASQANIR PYLEGILSQVIHLEKITSEMGSASQANIRL KITSEMGSASQANIRLTSLKKTLATTLAPR K I T I R L 2 1 1 0 0 1 1 1 0 2 0 0 1 0 0 3 1 0 0 0 0 0 14 0 1463.7038 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8 B2RWN5 1792 1805 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 7.0658E-36 163.84 7 2 0.58287 0.88819 8.8249 3 Median 0.76795 1.0284 NaN 1 0 Median 0.5814 0.8829 0.84546 2 0 Median 41813000 25917000 15896000 4018300 1809400 2208900 37795000 24107000 13688000 6019 748 6155;6156 21852;21853;21854;21855;21856;21857;21858;21859;21860 33007;33008;33009;33010;33011;33012;33013;33014;33015;33016;33017 33012 259 11 ITSENPDEGFKPSSGTVQELNFR SAHVPCPRGHVIAARITSENPDEGFKPSSG GFKPSSGTVQELNFRSNKNVWGYFSVAAAG R I T F R S 0 1 2 1 0 1 3 2 0 1 1 1 0 2 2 3 2 0 0 1 0 0 23 1 2551.2191 A0A024R0Y2;B2ZZ90;Q13085;A2NX49;O00763 A0A024R0Y2 432 454 hCG_30204;ACACA;ACACB Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase yes no 3 0.00035314 71.434 2 0.45688 0.58702 NaN 1 Median 0.45688 0.58702 NaN 1 0 Median NaN NaN NaN 0 0 Median 8323200 5998000 2325200 8323200 5998000 2325200 0 0 0 6020 43 6157 21861;21862 33018;33019;33020;33021;33022;33023 33021 6 ITSGPFEPDLYK QFKFTVLLMPNGPMRITSGPFEPDLYKSEM PMRITSGPFEPDLYKSEMEVQDAELKALLQ R I T Y K S 0 0 0 1 0 0 1 1 0 1 1 1 0 1 2 1 1 0 1 0 0 0 12 0 1365.6816 A8K6Y1;Q6PIN5;A0A024RB85;Q9UQ80;Q05D08 A8K6Y1 333 344 PA2G4 Proliferation-associated protein 2G4 yes no 2 0.016277 72.2 1 0.60907 0.76754 NaN 1 Median 0.60907 0.76754 NaN 1 0 Median NaN NaN NaN 0 0 Median 2998200 1754400 1243800 2998200 1754400 1243800 0 0 0 6021 264 6158 21863 33024 33024 1 ITSLLAYR PTPKHECHVSKNANRITSLLAYRAYELTQY VSKNANRITSLLAYRAYELTQYYFYEYGFD R I T Y R A 1 1 0 0 0 0 0 0 0 1 2 0 0 0 0 1 1 0 1 0 0 0 8 0 935.54402 Q9UK61 Q9UK61 286 293 FAM208A Protein FAM208A yes yes 2 0.022027 57.281 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1052100 1052100 0 1052100 1052100 0 0 0 0 6022 1787 6159 21864 33025 33025 1 ITTVFSHAQTVVLCVGCSTVLCQPTGGK PNSYFMDVKCPGCYKITTVFSHAQTVVLCV CVGCSTVLCQPTGGKARLTEGCSFRRKQH_ K I T G K A 1 0 0 0 3 2 0 3 1 1 2 1 0 1 1 2 5 0 0 5 0 0 28 0 3019.4929 H0YMV8;Q71UM5;C9JLI6;C9J1C5;P42677 P42677 43 70 RPS27L;RPS27 40S ribosomal protein S27;40S ribosomal protein S27-like no no 3 1.0812E-07 50.857 1 1.1352 1.4335 NaN 1 Median 1.1352 1.4335 NaN 1 0 Median NaN NaN NaN 0 0 Median 9186800 4357800 4829100 9186800 4357800 4829100 0 0 0 6023 1337;1103 6160 21865 33026;33027 33027 2 ITTVIQHVFQNLILGSK ERIKIIRQNLQMEIKITTVIQHVFQNLILG TVIQHVFQNLILGSKVNWAEDPALKEIVLQ K I T S K V 0 0 1 0 0 2 0 1 1 3 2 1 0 1 0 1 2 0 0 2 0 0 17 0 1910.0989 B3KVZ3;A0A0S2Z5T0;Q9H3R5;H0Y9E6 B3KVZ3 189 205 CENPH Centromere protein H yes no 3 1.6312E-09 122.01 4 0.64566 0.80946 10.363 4 Median 0.64566 0.80946 10.363 4 0 Median NaN NaN NaN 0 0 Median 31351000 19156000 12195000 31351000 19156000 12195000 0 0 0 6024 482 6161 21866;21867;21868;21869 33028;33029;33030;33031;33032;33033 33030 6 ITTVNSVLPQNSVLGGVLK PDAKLDKTCISRAMKITTVNSVLPQNSVLG NSVLPQNSVLGGVLKTKQQLKTLNHFDLTN K I T L K T 0 0 2 0 0 1 0 2 0 1 3 1 0 0 1 2 2 0 0 4 0 0 19 0 1938.115 Q8NCN4 Q8NCN4 570 588 RNF169 E3 ubiquitin-protein ligase RNF169 yes yes 2 0.0027195 66.797 2 0.54414 0.71169 30.517 2 Median 0.54414 0.71169 30.517 2 0 Median NaN NaN NaN 0 0 Median 6772300 4950400 1821900 6772300 4950400 1821900 0 0 0 6025 1651 6162 21870;21871 33034;33035 33035 2 ITVAECIETQSK TSEPEGDWFCPECEKITVAECIETQSKAMT CEKITVAECIETQSKAMTMLTIEQLSYLLK K I T S K A 1 0 0 0 1 1 2 0 0 2 0 1 0 0 0 1 2 0 0 1 0 0 12 0 1377.681 A0A087WYS3;H7C4X9;A0A087WVZ6;Q9ULU4;A0A087WV57;A6H8Y8;Q5TH12;Q2HXV5 A0A087WYS3 133 144 ZMYND8 Protein kinase C-binding protein 1 yes no 2 4.5018E-05 133.89 4 2 0.60429 0.76298 43.378 3 Median 0.57866 0.72714 6.804 2 0 Median 1.0476 1.5343 NaN 1 0 Median 27280000 17083000 10197000 17949000 11657000 6291500 9330900 5425200 3905700 6026 365 6163 21872;21873;21874;21875;21876;21877 33036;33037;33038;33039;33040;33041;33042 33037 7 ITVENEVDLDGPPR RWEQELNAKRSHLGRITVENEVDLDGPPRA RITVENEVDLDGPPRAFVYINEYRVGEGIT R I T P R A 0 1 1 2 0 0 2 1 0 1 1 0 0 0 2 0 1 0 0 2 0 0 14 0 1552.7733 O43463;Q14828 O43463 145 158 SUV39H1;MG44 Histone-lysine N-methyltransferase SUV39H1 yes no 2 8.8478E-33 196.24 4 2 0.79037 1.1466 7.2739 6 Median 0.82132 1.1171 4.7449 4 0 Median 0.77593 1.2472 2.0931 2 0 Median 222470000 123620000 98847000 128250000 68514000 59736000 94220000 55110000 39111000 6027 1185 6164 21878;21879;21880;21881;21882;21883 33043;33044;33045;33046;33047;33048;33049;33050;33051 33043 9 ITVLEALR EARLGKPSLVRETSRITVLEALRHPIQVSR LVRETSRITVLEALRHPIQVSRRLLSRPQD R I T L R H 1 1 0 0 0 0 1 0 0 1 2 0 0 0 0 0 1 0 0 1 0 0 8 0 913.55967 Q9NVI7;Q5T9A4;Q96T67;Q9H834 Q9NVI7 339 346 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B no no 2 0.00019338 124.59 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8753700 8753700 0 8753700 8753700 0 0 0 0 6028 1763;1573 6165 21884;21885;21886 33052;33053;33054;33055 33054 4 ITVPGNFQGHSGAQCITCSYK YEMVSRVMKALVNRKITVPGNFQGHSGAQC FQGHSGAQCITCSYKASSGLLYPLERGFIY K I T Y K A 1 0 1 0 2 2 0 3 1 2 0 1 0 1 1 2 2 0 1 1 0 0 21 0 2324.0678 A0A024R4Z6;Q08945 A0A024R4Z6 326 346 SSRP1 FACT complex subunit SSRP1 yes no 3 2.884E-48 146.89 3 2 0.78713 1.0326 1.6172 5 Median 0.79316 1.0378 1.2054 3 0 Median 0.63547 1.0166 0.33994 2 0 Median 643920000 380710000 263210000 545680000 320200000 225490000 98236000 60511000 37724000 6029 132 6166 21887;21888;21889;21890;21891 33056;33057;33058;33059;33060;33061;33062;33063;33064;33065;33066;33067 33062 12 ITVTSEVPFSK NLGGGVVTIERSKSKITVTSEVPFSKRYLK SKSKITVTSEVPFSKRYLKYLTKKYLKKNN K I T S K R 0 0 0 0 0 0 1 0 0 1 0 1 0 1 1 2 2 0 0 2 0 0 11 0 1206.6496 K7ERI7;K7EJT5;K7EP65;K7EKS7;K7ELC4;K7EMH1;Q7Z4W8;P35268 Q7Z4W8 37 47 RPL22 60S ribosomal protein L22 no no 2 3.994E-22 192.26 4 2 0.87849 1.1652 31.501 6 Median 0.88545 1.1743 1.1243 4 0 Median 0.406 0.6396 6.4644 2 0 Median 3599100000 2036400000 1562700000 2923400000 1570500000 1353000000 675710000 465970000 209740000 6030 1153;1319 6167 21892;21893;21894;21895;21896;21897 33068;33069;33070;33071;33072;33073;33074;33075;33076;33077;33078;33079 33075 12 ITVVPSAK ______________________________ AHYNFKKITVVPSAKDFIDLTLSKTQRKTP K I T A K D 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 2 0 0 8 0 813.496 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8 Q53GS0 9 16 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.0061849 96.19 4 2 0.75816 1.0124 12.938 5 Median 0.77456 0.96232 17.969 3 0 Median 0.64257 1.021 1.1966 2 0 Median 180410000 102130000 78281000 107200000 57902000 49302000 73206000 44227000 28979000 6031 975 6168 21898;21899;21900;21901;21902;21903 33080;33081;33082;33083;33084;33085;33086;33087;33088;33089 33084 10 IVAETMNNYLFGER KGYAFVEFESEDVAKIVAETMNNYLFGERL KIVAETMNNYLFGERLLECHFMPPEKVHKE K I V E R L 1 1 2 0 0 0 2 1 0 1 1 0 1 1 0 0 1 0 1 1 0 0 14 0 1655.7977 Q9BYG3;B4DSM4;C9J6C5 Q9BYG3 101 114 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2 4.688E-05 112.86 5 2 0.82284 1.2091 12.639 4 Median 0.98974 1.3376 2.025 2 0 Median 0.67711 1.0792 3.8151 2 0 Median 88510000 54271000 34238000 10296000 6273900 4021900 78214000 47997000 30217000 6032 1726 6169;6170 21904;21905;21906;21907;21908;21909;21910 33090;33091;33092;33093;33094;33095;33096;33097;33098;33099 33095 782 10 IVALNAHTFLR VDVIFADVAQPDQTRIVALNAHTFLRNGGH DQTRIVALNAHTFLRNGGHFVISIKANCID R I V L R N 2 1 1 0 0 0 0 0 1 1 2 0 0 1 0 0 1 0 0 1 0 0 11 0 1253.7244 Q96BS4;P22087;M0R299;M0QXL5;M0R2Q4;B4DLD4;M0R0P1;A6NHQ2 Q96BS4 184 194 FBL;FBLL1 rRNA 2-O-methyltransferase fibrillarin;rRNA/tRNA 2-O-methyltransferase fibrillarin-like protein 1 no no 2;3 1.3828E-09 156.16 7 4 0.60354 0.81723 12.776 11 Median 0.69833 0.9474 9.781 7 0 Median 0.45621 0.75103 5.9839 4 0 Median 1488600000 926540000 562080000 788080000 461260000 326820000 700550000 465290000 235260000 6033 1288;566 6171 21911;21912;21913;21914;21915;21916;21917;21918;21919;21920;21921 33100;33101;33102;33103;33104;33105;33106;33107;33108;33109;33110;33111;33112;33113;33114;33115;33116;33117;33118;33119;33120 33100 21 IVALSSSLSNAK SRMRYISSQIERPIRIVALSSSLSNAKDVA PIRIVALSSSLSNAKDVAHWLGCSATSTFN R I V A K D 2 0 1 0 0 0 0 0 0 1 2 1 0 0 0 4 0 0 0 1 0 0 12 0 1188.6714 O75643;A4FU77;B4E150;B4E0P5 O75643 1487 1498 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 9.6855E-13 133.99 3 2 0.6978 0.87377 38.575 5 Median 0.68983 0.87169 6.9699 3 0 Median 1.1259 1.6851 2.3626 2 0 Median 52726000 28282000 24444000 35297000 20766000 14532000 17429000 7516700 9912300 6034 1206 6172 21922;21923;21924;21925;21926 33121;33122;33123;33124;33125;33126 33123 6 IVAPTVSQINAEFVTQLACK ______________________________ VSQINAEFVTQLACKYWAPHIKKKSPFDIK K I V C K Y 3 0 1 0 1 2 1 0 0 2 1 1 0 1 1 1 2 0 0 3 0 0 20 0 2188.1562 B0AZM4;A8K6F0;A0A024R9L1;O60306;H0YH15 B0AZM4 10 29 AQR Intron-binding protein aquarius yes no 2 0.00019316 46.88 1 0.39962 0.50817 NaN 1 Median 0.39962 0.50817 NaN 1 0 Median NaN NaN NaN 0 0 Median 2052300 1632100 420180 2052300 1632100 420180 0 0 0 6035 226 6173 21927 33127 33127 1 IVASASFDK HQALINQVLFSPDSRIVASASFDKSIKLWD FSPDSRIVASASFDKSIKLWDGRTGKYLAS R I V D K S 2 0 0 1 0 0 0 0 0 1 0 1 0 1 0 2 0 0 0 1 0 0 9 0 936.49165 B4E074;Q9NVX2;B4E303;A0A0A0MRH0;K7EN33 B4E074 362 370 NLE1 Notchless protein homolog 1 yes no 2 0.02567 48.423 1 0.72341 0.9265 NaN 1 Median 0.72341 0.9265 NaN 1 0 Median NaN NaN NaN 0 0 Median 5192500 2810700 2381800 5192500 2810700 2381800 0 0 0 6036 883 6174 21928 33128 33128 1 IVCDLIENK QEGIRWTPIEYFNNKIVCDLIENKVNPPGI EYFNNKIVCDLIENKVNPPGIMSILDDVCA K I V N K V 0 0 1 1 1 0 1 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1102.5692 Q4KMR3;Q12965;H0YLE5 Q4KMR3 445 453 MYO1E Unconventional myosin-Ie yes no 2 0.0061489 70.919 2 0.87706 1.1135 NaN 1 Median 0.87706 1.1135 NaN 1 0 Median NaN NaN NaN 0 0 Median 10708000 8873000 1834900 10708000 8873000 1834900 0 0 0 6037 1459 6175 21929;21930 33129;33130 33130 2 IVDAVIQEHQPSVLLELGAYCGYSAVR EQKEWAMNVGDKKGKIVDAVIQEHQPSVLL VLLELGAYCGYSAVRMARLLSPGARLITIE K I V V R M 3 1 0 1 1 2 2 2 1 2 3 0 0 0 1 2 0 0 2 4 0 0 27 0 2986.5222 A0A140VJG8;P21964;E7EMS6;E7EUU8;F8WBW9 A0A140VJG8 99 125 COMT Catechol O-methyltransferase yes no 3 3.6775E-07 102.97 3 0.46599 0.62736 12.29 2 Median 0.46599 0.62736 12.29 2 0 Median NaN NaN NaN 0 0 Median 31448000 21269000 10179000 31448000 21269000 10179000 0 0 0 6038 495 6176 21931;21932;21933 33131;33132;33133;33134;33135 33131 5 IVDQIRPDR ADRMLDMGFEPQIRKIVDQIRPDRQTLMWS EPQIRKIVDQIRPDRQTLMWSATWPKEVRQ K I V D R Q 0 2 0 2 0 1 0 0 0 2 0 0 0 0 1 0 0 0 0 1 0 0 9 1 1110.6146 Q59F66;Q92841;B4DN41;J3KTA4;B5BUE6;P17844;B4DNG2;Q7Z2V5;Q59E92;J3KRZ1;J3QSF1 B4DN41 254 262 DDX17;DDX5;DKFZp686J01190 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 no no 3 0.0092028 39.622 1 1 0.77457 1.1007 96.35 2 Median 0.40981 0.55693 NaN 1 0 Median 1.464 2.1756 NaN 1 0 Median 83704000 48457000 35247000 60360000 39113000 21248000 23343000 9344100 13999000 6039 833;1554 6177 21934;21935 33136;33137;33138;33139 33136 4 IVDVNFQSLLDEDQAPPSSLLVHK ESVVGFPFLDKRYRKIVDVNFQSLLDEDQA LDEDQAPPSSLLVHKLIFQYVEEKESWKKT K I V H K L 1 0 1 3 0 2 1 0 1 1 4 1 0 1 2 3 0 0 0 3 0 0 24 0 2663.3806 Q8NG31;H0YCZ2 Q8NG31 2177 2200 CASC5 Protein CASC5 yes no 3 0.00023771 51.029 3 1 0.6135 0.84595 32.353 4 Median 0.67655 0.85097 39.339 3 0 Median 0.55632 0.84097 NaN 1 0 Median 47438000 29628000 17810000 32733000 20383000 12350000 14705000 9245400 5459600 6040 1656 6178 21936;21937;21938;21939 33140;33141;33142;33143;33144 33143 5 IVECRPPVVEPDINSTVEHDENR WSTTDARKRCVYTCKIVECRPPVVEPDINS VEPDINSTVEHDENRTIAHSPTSFTESSSK K I V N R T 0 2 2 2 1 0 4 0 1 2 0 0 0 0 3 1 1 0 0 4 0 0 23 1 2703.2922 Q03164 Q03164 2071 2093 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 4 0.0010257 58.796 3 1 0.87691 1.1818 18.423 3 Median 0.97612 1.3335 17.073 2 0 Median 0.76551 1.0478 NaN 1 0 Median 41334000 21002000 20333000 34309000 17602000 16707000 7025300 3399800 3625500 6041 1438 6179 21940;21941;21942;21943 33145;33146;33147;33148;33149 33146 5 IVEDAPPIDLQAEAQHASGEVEEPPR QLDSFDEFIQMSVQRIVEDAPPIDLQAEAQ AEAQHASGEVEEPPRYLLKFEQIYLSKPTH R I V P R Y 4 1 0 2 0 2 5 1 1 2 1 0 0 0 4 1 0 0 0 2 0 0 26 0 2796.3566 C9J2Y9;B4DHJ3;P30876 C9J2Y9 51 76 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 3 0.013914 65.064 2 1.0174 1.3746 NaN 1 Median 1.0174 1.3746 NaN 1 0 Median NaN NaN NaN 0 0 Median 6714200 3102200 3611900 6714200 3102200 3611900 0 0 0 6042 807 6180 21944;21945 33150;33151 33151 2 IVEPYIAWGYPNLK GTFVKLNKASINMLRIVEPYIAWGYPNLKS RIVEPYIAWGYPNLKSVNELIYKRGYGKIN R I V L K S 1 0 1 0 0 0 1 1 0 2 1 1 0 0 2 0 0 1 2 1 0 0 14 0 1661.8817 A0A024R814;P18124;A8MUD9;O95036 A0A024R814 146 159 RPL7;WUGSC:H_RG054D04.1 60S ribosomal protein L7 yes no 2 0.000467 78.655 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54164000 54164000 0 0 0 0 54164000 54164000 0 6043 189 6181 21946;21947 33152;33153 33153 2 IVEPYVTWGFPNLK GVFVKVTPQNLKMLRIVEPYVTWGFPNLKS RIVEPYVTWGFPNLKSVRELILKRGQAKVK R I V L K S 0 0 1 0 0 0 1 1 0 1 1 1 0 1 2 0 1 1 1 2 0 0 14 0 1661.8817 A0A024RD36;Q6DKI1;R4GMU7;B3KMP5;A8K5J5 A0A024RD36 142 155 RPL7L1 60S ribosomal protein L7-like 1 yes no 2 0.0022451 59.542 1 1.6508 2.4888 NaN 1 Median NaN NaN NaN 0 0 Median 1.6508 2.4888 NaN 1 0 Median 13843000 5946800 7896400 0 0 0 13843000 5946800 7896400 6044 311 6182 21948 33154 33154 1 IVETEAYLGPEDEAAHSR VLVRRLPNGTELRGRIVETEAYLGPEDEAA TEAYLGPEDEAAHSRGGRQTPRNRGMFMKP R I V S R G 3 1 0 1 0 0 4 1 1 1 1 0 0 0 1 1 1 0 1 1 0 0 18 0 1985.933 A2IDA3;Q1W6H1;P29372 A2IDA3 104 121 MPG DNA-3-methyladenine glycosylase yes no 3 7.559E-05 49.973 2 0.40336 0.5789 0.86522 2 Median NaN NaN NaN 0 0 Median 0.40336 0.5789 0.86522 2 0 Median 23722000 15974000 7748200 0 0 0 23722000 15974000 7748200 6045 537 6183 21949;21950 33155;33156 33155 2 IVETIEELK PVPMFLPTTLESTDKIVETIEELKVKIPSN LESTDKIVETIEELKVKIPSNPLEADILAM K I V L K V 0 0 0 0 0 0 3 0 0 2 1 1 0 0 0 0 1 0 0 1 0 0 9 0 1072.6016 A6NHN7;A6NHB5;Q14202 A6NHN7 914 922 ZMYM3 Zinc finger MYM-type protein 3 yes no 2 0.0023749 98.629 3 0.75075 0.95279 0.37584 2 Median 0.75075 0.95279 0.37584 2 0 Median NaN NaN NaN 0 0 Median 16607000 10657000 5949800 16607000 10657000 5949800 0 0 0 6046 565 6184 21951;21952;21953 33157;33158;33159 33159 3 IVEVLLIK TNEKALETVFGKYGRIVEVLLIKDRETNKS VFGKYGRIVEVLLIKDRETNKSRGFAFVTF R I V I K D 0 0 0 0 0 0 1 0 0 2 2 1 0 0 0 0 0 0 0 2 0 0 8 0 925.6212 Q2VIN3;Q96E39;A0A1B0GUK8 Q2VIN3 34 41 RBMXL1 RNA binding motif protein, X-linked-like-1 yes no 2 0.0039661 99.375 3 0.57929 0.75398 NaN 1 Median 0.57929 0.75398 NaN 1 0 Median NaN NaN NaN 0 0 Median 4133600 3422000 711620 4133600 3422000 711620 0 0 0 6047 1531 6185 21954;21955;21956 33160;33161;33162 33162 3 IVEVLLMK TNEKALEAVFGKYGRIVEVLLMKDRETNKS VFGKYGRIVEVLLMKDRETNKSRGFAFVTF R I V M K D 0 0 0 0 0 0 1 0 0 1 2 1 1 0 0 0 0 0 0 2 0 0 8 0 943.57763 H0Y6E7;H3BT71;P38159;H3BR27;A8K8A6;O75526 H0Y6E7 36 43 RBMX;RBMXL2 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2 yes no 2 0.010222 72.138 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12832000 12832000 0 0 0 0 12832000 12832000 0 6048 1091 6186 21957;21958 33163;33164 33164 390 2 IVFLHNDR SEVVTFEILSDDYSKIVFLHNDRYIEFHSQ LSDDYSKIVFLHNDRYIEFHSQSGFYYKTR K I V D R Y 0 1 1 1 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 8 0 1012.5454 Q9BSC4;B4DS83;H7C1Z3 Q9BSC4 110 117 NOL10 Nucleolar protein 10 yes no 3 0.0038645 60.59 4 0.82376 1.1262 5.4699 4 Median 0.82376 1.1262 5.4699 4 0 Median NaN NaN NaN 0 0 Median 146200000 79086000 67112000 146200000 79086000 67112000 0 0 0 6049 1710 6187 21959;21960;21961;21962 33165;33166;33167;33168;33169 33168 5 IVFQEFR VLEGIRICRQGFPNRIVFQEFRQRYEILTP CRQGFPNRIVFQEFRQRYEILTPNAIPKGF R I V F R Q 0 1 0 0 0 1 1 0 0 1 0 0 0 2 0 0 0 0 0 1 0 0 7 0 937.50215 P35580 P35580 719 725 MYH10 Myosin-10 no no 2 0.047575 51.787 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6050 1320 6188 21963 33170 33170 1 IVFVPGCSIPLTIVK EFEDRGFVQVDDGRKIVFVPGCSIPLTIVK IVFVPGCSIPLTIVKSDGGYTYDTSDLAAI K I V V K S 0 0 0 0 1 0 0 1 0 3 1 1 0 1 2 1 1 0 0 3 0 0 15 0 1641.9528 P54136;B4DXW6 P54136 363 377 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 0.00027143 69.01 2 0.51632 0.66007 0.004674 2 Median 0.51632 0.66007 0.004674 2 0 Median NaN NaN NaN 0 0 Median 11405000 7386400 4018600 11405000 7386400 4018600 0 0 0 6051 1373 6189 21964;21965 33171;33172;33173;33174 33174 4 IVGCTHITAQTAVLIETLCALGAQCR LRKRAQGEKPLAGAKIVGCTHITAQTAVLI AVLIETLCALGAQCRWSACNIYSTQNEVAA K I V C R W 4 1 0 0 3 2 1 2 1 3 3 0 0 0 0 0 4 0 0 2 0 0 26 0 2855.4456 Q2NKW8;A0A024R0A8;V5YQL4;O43865 Q2NKW8 123 148 AHCYL1;FGFR2-AHCYL1 Adenosylhomocysteinase;Putative adenosylhomocysteinase 2 yes no 3 1.7168E-09 58.015 1 0.83476 1.1438 NaN 1 Median 0.83476 1.1438 NaN 1 0 Median NaN NaN NaN 0 0 Median 4978200 2497800 2480400 4978200 2497800 2480400 0 0 0 6052 30 6190 21966 33175 33175 1 IVGLQYK HKQIMENAEINNIIKIVGLQYKKNYEDEDS AEINNIIKIVGLQYKKNYEDEDSLKTLRYG K I V Y K K 0 0 0 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 1 1 0 0 7 0 819.48544 P11388;Q71UH4;Q02880;E9PCY5 P11388 513 519 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 1;2 0.011283 105.42 5 1 0.91931 1.2057 4.7964 6 Median 0.94078 1.1893 5.293 5 0 Median 0.76294 1.2223 NaN 1 0 Median 2317900000 1206400000 1111500000 2144400000 1111300000 1033000000 173520000 95041000 78481000 6053 1256;1437 6191 21967;21968;21969;21970;21971;21972 33176;33177;33178;33179;33180;33181;33182;33183;33184;33185 33180 9 IVGLTEK KAQINIREDPKEGIKIVGLTEKTVLVALDT EDPKEGIKIVGLTEKTVLVALDTVSCLEQG K I V E K T 0 0 0 0 0 0 1 1 0 1 1 1 0 0 0 0 1 0 0 1 0 0 7 0 758.4538 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 176 182 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.0092691 118.69 4 0.91142 1.1569 4.2842 3 Median 0.91142 1.1569 4.2842 3 0 Median NaN NaN NaN 0 0 Median 162550000 76817000 85729000 162550000 76817000 85729000 0 0 0 6054 1216 6192 21973;21974;21975;21976 33186;33187;33188;33189;33190 33187 5 IVGQADGELNITLPEEVTVK HRSVLAACSSYFHSRIVGQADGELNITLPE DGELNITLPEEVTVKGFEPLIQFAYTAKLI R I V V K G 1 0 1 1 0 1 3 2 0 2 2 1 0 0 1 0 2 0 0 3 0 0 20 0 2124.1314 A8K4Q6;O14867;C9JMP6;C9IYR0;C9IYH8 A8K4Q6 63 82 BACH1 Transcription regulator protein BACH1 yes no 2 3.8531E-05 94.461 2 1.0267 1.3094 31.397 2 Median 1.0267 1.3094 31.397 2 0 Median NaN NaN NaN 0 0 Median 9171300 4417300 4753900 9171300 4417300 4753900 0 0 0 6055 607 6193 21977;21978 33191;33192 33191 2 IVILEYQPSK GGTKDYIVVGSDSGRIVILEYQPSKNMFEK SDSGRIVILEYQPSKNMFEKIHQETFGKSG R I V S K N 0 0 0 0 0 1 1 0 0 2 1 1 0 0 1 1 0 0 1 1 0 0 10 0 1188.6754 A8K6V3;Q15393;J3QRB2;J3QL37 A8K6V3 87 96 SF3B3 Splicing factor 3B subunit 3 yes no 2 0.014603 74.464 2 0.56818 0.71963 5.2024 2 Median 0.56818 0.71963 5.2024 2 0 Median NaN NaN NaN 0 0 Median 14400000 8250300 6149400 14400000 8250300 6149400 0 0 0 6056 628 6194 21979;21980 33193;33194 33194 2 IVILPDYLEIAR FDLSEEKFELDEDVKIVILPDYLEIARDGL DVKIVILPDYLEIARDGLGGLPDIVRDRVT K I V A R D 1 1 0 1 0 0 1 0 0 3 2 0 0 0 1 0 0 0 1 1 0 0 12 0 1413.8232 A0A140VJZ1;P45974 A0A140VJZ1 122 133 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 0.0007235 98.249 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8122000 8122000 0 8122000 8122000 0 0 0 0 6057 505 6195 21981 33195 33195 1 IVIPNEESVVIYYK GVVEKVKNSEEQYNKIVIPNEESVVIYYKI KIVIPNEESVVIYYKIRQQLAKLGKEIEEY K I V Y K I 0 0 1 0 0 0 2 0 0 3 0 1 0 0 1 1 0 0 2 3 0 0 14 0 1664.9025 P42285;A8K6I4;B4E3M6 P42285 615 628 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 0.00073874 104.52 3 1 0.93835 1.2157 21.493 3 Median 0.88161 1.1251 10.949 2 0 Median 1.0801 1.5922 NaN 1 0 Median 27231000 9224000 18007000 19864000 7644500 12220000 7366400 1579400 5786900 6058 1336 6196 21982;21983;21984;21985 33196;33197;33198;33199;33200 33199 5 IVITGDGDIDHDQALAQAIR KTVKGGISETRIEKRIVITGDGDIDHDQAL DGDIDHDQALAQAIREAREQHPDMSVTRVV R I V I R E 3 1 0 4 0 2 0 2 1 4 1 0 0 0 0 0 1 0 0 1 0 0 20 0 2120.0862 Q59FD8;E9PII3;E9PK52;E9PHY5;O43491;E9PPC9;O60642;Q9UG62;Q6ZSX4;B4DJ76;Q6R5J7 Q59FD8 629 648 EPB41L2;DKFZp564J1082 Band 4.1-like protein 2 yes no 3 0.017585 18.538 1 0.44705 0.61767 NaN 1 Median 0.44705 0.61767 NaN 1 0 Median NaN NaN NaN 0 0 Median 3979400 2959400 1019900 3979400 2959400 1019900 0 0 0 6059 1030 6197 21986 33201 33201 1 IVKPNGEKPDEFESGISQALLELEMNSDLK ______________________________ ISQALLELEMNSDLKAQLRELNITAAKEIE K I V L K A 1 0 2 2 0 1 5 2 0 2 4 3 1 1 2 3 0 0 0 1 0 0 30 2 3329.6701 P62081;B5MCP9 P62081 8 37 RPS7 40S ribosomal protein S7 yes no 4 5.4377E-43 112.9 2 1 0.4767 0.6651 39.782 2 Median 0.78579 0.88116 NaN 1 0 Median 0.28919 0.50202 NaN 1 0 Median 92964000 67665000 25300000 13720000 8519800 5199700 79245000 59145000 20100000 6060 1395 6198;6199 21987;21988;21989 33202;33203;33204 33204 609 3 IVLATPR PGETGLPGSMKDTCKIVLATPRLHITIPRR GSMKDTCKIVLATPRLHITIPRRSKRNISK K I V P R L 1 1 0 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 0 1 0 0 7 0 768.48577 Q6P0N0;G5E9K5;H7C1S6 Q6P0N0 342 348 MIS18BP1 Mis18-binding protein 1 yes no 2 0.017608 92.191 2 1 0.6956 0.9833 NaN 1 Median NaN NaN NaN 0 0 Median 0.6956 0.9833 NaN 1 0 Median 12856000 9543200 3313100 5426700 5426700 0 7429600 4116500 3313100 6061 1588 6200 21990;21991;21992 33205;33206;33207 33206 3 IVLHPDTEHSK LGELLQQFGELKYVRIVLHPDTEHSKGCAF KYVRIVLHPDTEHSKGCAFAQFMTQEAAQK R I V S K G 0 0 0 1 0 0 1 0 2 1 1 1 0 0 1 1 1 0 0 1 0 0 11 0 1274.6619 A0A024R753;Q9NW13;B4DJ90;H7C5G8 A0A024R753 366 376 RBM28 RNA-binding protein 28 yes no 2;3 0.0008836 114.86 5 3 1.052 1.2987 24.492 8 Median 1.1124 1.3838 14.829 5 0 Median 0.67464 0.98179 7.3465 3 0 Median 94233000 45386000 48847000 80640000 37385000 43255000 13593000 8001300 5592200 6062 169 6201 21993;21994;21995;21996;21997;21998;21999;22000 33208;33209;33210;33211;33212;33213;33214;33215 33209 8 IVLLDSSLEYK DVTHPRMRRYIKNPRIVLLDSSLEYKKGES KNPRIVLLDSSLEYKKGESQTDIEITREED R I V Y K K 0 0 0 1 0 0 1 0 0 1 3 1 0 0 0 2 0 0 1 1 0 0 11 0 1278.7071 B4DUR8;B3KX11;Q2TU64;Q59H77;P49368;Q5SZX6 B4DUR8 193 203 CCT3 T-complex protein 1 subunit gamma yes no 2 0.012146 46.819 1 0.47015 0.61101 NaN 1 Median 0.47015 0.61101 NaN 1 0 Median NaN NaN NaN 0 0 Median 5667500 3779500 1888000 5667500 3779500 1888000 0 0 0 6063 787 6202 22001 33216 33216 1 IVLLSANSIR LHHPRATFLGLTNEKIVLLSANSIRATVAT LTNEKIVLLSANSIRATVATENNKVATWVD K I V I R A 1 1 1 0 0 0 0 0 0 2 2 0 0 0 0 2 0 0 0 1 0 0 10 0 1084.6604 E7EMW7;O95071 E7EMW7 418 427 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 2 0.015806 95.815 2 0.23615 0.33358 NaN 1 Median 0.23615 0.33358 NaN 1 0 Median NaN NaN NaN 0 0 Median 6894400 5878900 1015500 6894400 5878900 1015500 0 0 0 6064 1008 6203 22002;22003 33217;33218 33217 2 IVLPTEK EIVSEAESHVSGISRIVLPTEKTTGARRSK SHVSGISRIVLPTEKTTGARRSKAKSLTDP R I V E K T 0 0 0 0 0 0 1 0 0 1 1 1 0 0 1 0 1 0 0 1 0 0 7 0 798.48511 Q5QJE6;J3KP30;B7Z854 Q5QJE6 153 159 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2 0.020612 76.035 1 2 0.77526 1.1775 2.7163 3 Median 0.94408 1.1775 NaN 1 0 Median 0.74869 1.1545 3.4885 2 0 Median 94998000 51802000 43196000 43721000 22159000 21563000 51277000 29644000 21633000 6065 1561 6204 22004;22005;22006 33219;33220;33221;33222;33223 33219 5 IVLQIDNAR DLRAQIFANTVDNARIVLQIDNARLAADDF TVDNARIVLQIDNARLAADDFRVKYETELA R I V A R L 1 1 1 1 0 1 0 0 0 2 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1040.5978 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__P05784 F8VZY9 150 158 KRT18 Keratin, type I cytoskeletal 18 no no 1;2 5.4552E-12 171.38 5 2 0.23375 0.32273 107.58 6 Median 0.22995 0.31632 5.2676 4 0 Median 1.5414 2.4941 1.0157 2 0 Median 743330000 552500000 190820000 626540000 509070000 117470000 116780000 43434000 73351000 + 6066 252;954 6205 22007;22008;22009;22010;22011;22012;22013 33224;33225;33226;33227;33228;33229;33230;33231;33232;33233;33234;33235;33236;33237;33238;33239;33240;33241;33242;33243 33229 20 IVLRLECVEPNCR QTKPIFRKKAKTTKKIVLRLECVEPNCRSK KKIVLRLECVEPNCRSKRMLAIKRCKHFEL K I V C R S 0 2 1 0 2 0 2 0 0 1 2 0 0 0 1 0 0 0 0 2 0 0 13 1 1656.844 J3KQN4;Q969Q0;P83881;B2R4V2;H0Y5B4;H7BZ11 J3KQN4 102 114 RPL36A;RPL36AL;RPL36A-HNRNPH2 60S ribosomal protein L36a-like;60S ribosomal protein L36a yes no 3 9.7205E-09 92.295 3 0.95705 1.3029 0.20568 2 Median 0.95705 1.3029 0.20568 2 0 Median NaN NaN NaN 0 0 Median 69296000 41165000 28131000 69296000 41165000 28131000 0 0 0 6067 1136 6206 22014;22015;22016 33244;33245;33246;33247 33245 4 IVLTNPVCTEVGEK STGGRVSAVKADLGKIVLTNPVCTEVGEKI KIVLTNPVCTEVGEKIALSRRVEKHWRLIG K I V E K I 0 0 1 0 1 0 2 1 0 1 1 1 0 0 1 0 2 0 0 3 0 0 14 0 1557.8072 P41091;Q2VIR3 P41091 427 440 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 7.2632E-06 122.69 3 0.63906 0.80943 18.542 3 Plateau 0.63906 0.80943 18.542 3 0 Plateau NaN NaN NaN 0 0 Median 28700000 17294000 11406000 28700000 17294000 11406000 0 0 0 6068 1333 6207 22017;22018;22019 33248;33249;33250;33251;33252 33249 5 IVPNVLLEQGK LPNDPMFKLVAQLYKIVPNVLLEQGKAKNP QLYKIVPNVLLEQGKAKNPWPNVDAHSGVL K I V G K A 0 0 1 0 0 1 1 1 0 1 2 1 0 0 1 0 0 0 0 2 0 0 11 0 1208.7129 A0A0C4DGI3;B3KTN4;B4DJV2;A0A024RB75;O75390;H0YIC4;Q0QEL2 A0A0C4DGI3 317 327 CS Citrate synthase;Citrate synthase, mitochondrial yes no 2 0.0028578 91.584 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4301400 4301400 0 4301400 4301400 0 0 0 0 6069 262 6208 22020;22021 33253;33254 33254 2 IVPVEITISLLK SQYGELIEKYIKEGKIVPVEITISLLKREM EGKIVPVEITISLLKREMDQTMAANAQKNK K I V L K R 0 0 0 0 0 0 1 0 0 3 2 1 0 0 1 1 1 0 0 2 0 0 12 0 1323.8377 Q5T0D2;B4DDL4;B2R6S5;P30085;B4DFW6 Q5T0D2 94 105 CMPK1;CMPK UMP-CMP kinase yes no 2 0.0012436 64.374 1 0.29427 0.37269 NaN 1 Median 0.29427 0.37269 NaN 1 0 Median NaN NaN NaN 0 0 Median 6307100 4946500 1360500 6307100 4946500 1360500 0 0 0 6070 700 6209 22022 33255;33256 33255 2 IVQAEGEAEAAK AQFLVEKAKQEQRQKIVQAEGEAEAAKMLG RQKIVQAEGEAEAAKMLGEALSKNPGYIKL K I V A K M 4 0 0 0 0 1 3 1 0 1 0 1 0 0 0 0 0 0 0 1 0 0 12 0 1214.6143 J3KPX7;Q99623;F5GY37 J3KPX7 225 236 PHB2 Prohibitin-2 yes no 2 8.0138E-25 197.79 4 2 0.60645 0.79645 61.972 6 Median 0.59585 0.78316 3.4749 4 0 Median 1.636 2.5807 6.4601 2 0 Median 558770000 326550000 232220000 494810000 302880000 191930000 63956000 23673000 40283000 6071 1133 6210 22023;22024;22025;22026;22027;22028 33257;33258;33259;33260;33261;33262;33263;33264;33265;33266;33267 33259 11 IVQMTEAEVR LITRLLEVRGCRPGKIVQMTEAEVRGLCIK CRPGKIVQMTEAEVRGLCIKSREIFLSQPI K I V V R G 1 1 0 0 0 1 2 0 0 1 0 0 1 0 0 0 1 0 0 2 0 0 10 0 1174.6016 V9HW04;P62140;C9J9S3;C9JP48 V9HW04 26 35 HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes no 2 1.364E-05 105.52 1 3 0.83243 1.2547 6.1131 3 Plateau NaN NaN NaN 0 0 Median 0.83243 1.2547 6.1131 3 0 Plateau 50809000 25261000 25549000 3978400 0 3978400 46831000 25261000 21570000 6072 1397 6211;6212 22029;22030;22031;22032 33268;33269;33270;33271;33272;33273;33274 33269 610 7 IVQVALNGLENILR CIKPLCDLLTVMDSKIVQVALNGLENILRL KIVQVALNGLENILRLGEQEAKRNGTGINP K I V L R L 1 1 2 0 0 1 1 1 0 2 3 0 0 0 0 0 0 0 0 2 0 0 14 0 1550.9144 Q5BKZ2;P52294 Q5BKZ2 439 452 KPNA1 Importin subunit alpha;Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed no no 2 1.0534E-19 162.38 4 0.44293 0.63801 NaN 1 Median 0.44293 0.63801 NaN 1 0 Median NaN NaN NaN 0 0 Median 11010000 8282200 2727500 11010000 8282200 2727500 0 0 0 6073 1364 6213 22033;22034;22035;22036 33275;33276;33277;33278 33276 4 IVSGCPLPEACELYYVNR WLNDLLCLDCLNITRIVSGCPLPEACELYY GCPLPEACELYYVNRDTLFCYHKASEVFLQ R I V N R D 1 1 1 0 2 0 2 1 0 1 2 0 0 0 2 1 0 0 2 2 0 0 18 0 2139.0129 Q05CW7;Q9H0A0;A0A087WV29 Q9H0A0 495 512 NAT10 N-acetyltransferase 10 no no 2 7.9409E-31 170 4 1 0.76972 1.0347 17.703 5 Median 0.78725 1.0672 5.1569 4 0 Median 0.46456 0.7277 NaN 1 0 Median 185210000 105210000 80005000 149050000 80025000 69028000 36160000 25183000 10977000 6074 1730;1443 6214 22037;22038;22039;22040;22041 33279;33280;33281;33282;33283;33284;33285;33286;33287;33288;33289;33290 33285 12 IVSGEAESVEVTPENLQDFVGKPVFTVER LQKQVEKVLRKSAYKIVSGEAESVEVTPEN NLQDFVGKPVFTVERMYDVTPPGVVMGLAW K I V E R M 1 1 1 1 0 1 5 2 0 1 1 1 0 2 2 2 2 0 0 6 0 0 29 1 3174.6085 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0;K7ERR6 K7EJE8 597 625 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 3 0.0016028 45.862 2 0.49889 0.6738 2.9427 2 Median 0.49889 0.6738 2.9427 2 0 Median NaN NaN NaN 0 0 Median 10821000 7251000 3570200 10821000 7251000 3570200 0 0 0 6075 780 6215 22042;22043 33291;33292;33293 33292 3 IVSLFAEHNDLQYAAPGGLIGVGTK KDSEGKLMCKPIFSKIVSLFAEHNDLQYAA LQYAAPGGLIGVGTKIDPTLCRADRMVGQV K I V T K I 3 0 1 1 0 1 1 4 1 2 3 1 0 1 1 1 1 0 1 2 0 0 25 0 2569.354 P41091;Q2VIR3;F8W810 P41091 318 342 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 3 9.8695E-12 107.03 3 0.62935 0.80014 10.67 2 Median 0.62935 0.80014 10.67 2 0 Median NaN NaN NaN 0 0 Median 25949000 21277000 4671800 25949000 21277000 4671800 0 0 0 6076 1333 6216 22044;22045;22046 33294;33295;33296;33297;33298;33299 33297 6 IVSSSDVGHDEYSTQSLVK ADADDIDAWMLDILKIVSSSDVGHDEYSTQ SDVGHDEYSTQSLVKKHKDVAEEIANYRPT K I V V K K 0 0 0 2 0 1 1 1 1 1 1 1 0 0 0 5 1 0 1 3 0 0 19 0 2049.9855 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24 B2ZZ89 766 784 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 3.1054E-13 107.62 4 0.8915 1.1072 7.8723 4 Median 0.8915 1.1072 7.8723 4 0 Median NaN NaN NaN 0 0 Median 96148000 50075000 46073000 96148000 50075000 46073000 0 0 0 6077 346 6217 22047;22048;22049;22050 33300;33301;33302;33303;33304;33305 33305 6 IVSVGDDQEIHIYDCPI QDQVWGVKYNGNGSKIVSVGDDQEIHIYDC SVGDDQEIHIYDCPI_______________ K I V P I - 0 0 0 3 1 1 1 1 1 4 0 0 0 0 1 1 0 0 1 2 0 0 17 0 1971.9248 Q9GZS3;H0YL19 Q9GZS3 289 305 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes no 2 5.2317E-05 92.856 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65502000 0 0 65502000 0 0 0 0 0 6078 1729 6218 22051;22052;22053;22054 33306;33307;33308;33309 33309 4 IVTVSTGIK VYDADMDLTASEVSKIVTVSTGIKKKSNKK ASEVSKIVTVSTGIKKKSNKKTNEHGMKTF K I V I K K 0 0 0 0 0 0 0 1 0 2 0 1 0 0 0 1 2 0 0 2 0 0 9 0 916.55933 Q562F6;B7Z7S9 Q562F6 375 383 SGOL2 Shugoshin-like 2 yes no 2 0.020027 52.482 1 1.2963 1.851 NaN 1 Median NaN NaN NaN 0 0 Median 1.2963 1.851 NaN 1 0 Median 4735300 2035500 2699800 0 0 0 4735300 2035500 2699800 6079 1546 6219 22055 33310 33310 1 IVTVVPQDTK VSHGEVLRKVERGSRIVTVVPQDTKLVLQM ERGSRIVTVVPQDTKLVLQMPRGNLEVVHH R I V T K L 0 0 0 1 0 1 0 0 0 1 0 1 0 0 1 0 2 0 0 3 0 0 10 0 1098.6285 Q4LE38;O95163;B4E3I9;Q8N516;F5H2T0;B3KXE7;Q68DI5 Q4LE38 707 716 IKBKAP variant protein;IKBKAP;DKFZp781H1425 Elongator complex protein 1 yes no 2 0.007432 67.494 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4224600 4224600 0 4224600 4224600 0 0 0 0 6080 1213 6220 22056 33311 33311 1 IVVEFLQSNSDSTYEDLINK APIFGLMQEKIYISKIVVEFLQSNSDSTYE LQSNSDSTYEDLINKIETTVPPSGLNLNRF K I V N K I 0 0 2 2 0 1 2 0 0 2 2 1 0 1 0 3 1 0 1 2 0 0 20 0 2313.1376 A0A024R7E3;P26358;Q59FP7;K7EP77;I6L9H2 A0A024R7E3 573 592 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 no no 2 2.565E-19 146 4 0.42696 0.55799 8.5856 4 Median 0.42696 0.55799 8.5856 4 0 Median NaN NaN NaN 0 0 Median 18335000 12029000 6305800 18335000 12029000 6305800 0 0 0 6081 176;1129 6221 22057;22058;22059;22060 33312;33313;33314;33315;33316;33317;33318;33319 33312 8 IVVFQYSDGK TAMVYPEEAEPKQGRIVVFQYSDGKLQTVA PKQGRIVVFQYSDGKLQTVAEKEVKGAVYS R I V G K L 0 0 0 1 0 1 0 1 0 1 0 1 0 1 0 1 0 0 1 2 0 0 10 0 1154.5972 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 848 857 DDB1 DNA damage-binding protein 1 yes no 2 4.7523E-06 120.15 4 2 0.84791 1.0692 9.9252 5 Median 0.84978 1.064 4.2795 4 0 Median 0.8246 1.329 NaN 1 0 Median 236150000 136880000 99263000 198550000 117170000 81379000 37597000 19713000 17884000 6082 1520 6222 22061;22062;22063;22064;22065;22066 33320;33321;33322;33323;33324;33325;33326;33327;33328;33329 33329 10 IVVNLTGR YIGEFEIIDDHRAGKIVVNLTGRLNKCGVI DDHRAGKIVVNLTGRLNKCGVISPRFDVQL K I V G R L 0 1 1 0 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 2 0 0 8 0 870.5287 B2R4W8;P62244;I3L3P7;I3L246;H3BN98 B2R4W8 61 68 hCG_1994130;RPS15A 40S ribosomal protein S15a yes no 2 0.001227 162.31 3 2 0.83643 1.1499 40.409 5 Median 0.88128 1.1984 8.032 3 0 Median 0.35975 0.59144 1.2193 2 0 Median 2640500000 1531800000 1108700000 2332000000 1309900000 1022200000 308510000 221960000 86553000 6083 688 6223 22067;22068;22069;22070;22071 33330;33331;33332;33333;33334;33335;33336;33337;33338 33333 9 IVYLYTK TASNKTRLSRTPGNRIVYLYTKKVGKAPKS LSRTPGNRIVYLYTKKVGKAPKSACGVCPG R I V T K K 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 2 1 0 0 7 0 898.51641 A0A024RDH8;P49207 A0A024RDH8 30 36 RPL34 60S ribosomal protein L34 yes no 1;2 0.004926 143.37 5 1 0.79596 1.0407 7.496 6 Median 0.79632 1.0509 6.6705 5 0 Median 0.58871 0.94347 NaN 1 0 Median 1244100000 693660000 550420000 1099800000 600770000 499000000 144310000 92890000 51424000 6084 316 6224 22072;22073;22074;22075;22076;22077 33339;33340;33341;33342;33343;33344;33345;33346 33340 8 IWATDDGR TGRRIFTGSDDCLVKIWATDDGRLLATLRG SDDCLVKIWATDDGRLLATLRGHAAEISDM K I W G R L 1 1 0 2 0 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 0 0 8 0 932.43519 Q8WWQ0 Q8WWQ0 209 216 PHIP PH-interacting protein no no 2 0.038027 47.349 1 0.72799 0.94673 NaN 1 Median NaN NaN NaN 0 0 Median 0.72799 0.94673 NaN 1 0 Median 2814500 1604900 1209700 0 0 0 2814500 1604900 1209700 6085 1668 6225 22078 33347 33347 1 IWDLQGSEEPVFR HPHVVATGGKENALKIWDLQGSEEPVFRAK LKIWDLQGSEEPVFRAKNVRNDWLDLRVPI K I W F R A 0 1 0 1 0 1 2 1 0 1 1 0 0 1 1 1 0 1 0 1 0 0 13 0 1574.7729 Q6RFH5;E9PS41;B4E018 Q6RFH5 157 169 WDR74 WD repeat-containing protein 74 yes no 2 0.0029192 64.82 1 0.66948 0.94759 NaN 1 Median NaN NaN NaN 0 0 Median 0.66948 0.94759 NaN 1 0 Median 7165800 3424100 3741700 0 0 0 7165800 3424100 3741700 6086 1598 6226 22079 33348 33348 1 IWHHTFYNELR PIEHGIVTNWDDMEKIWHHTFYNELRVAPE DMEKIWHHTFYNELRVAPEEHPVLLTEAPL K I W L R V 0 1 1 0 0 0 1 0 2 1 1 0 0 1 0 0 1 1 1 0 0 0 11 0 1514.7419 B7Z6P1;P68133;P68032;A8K3K1;Q7Z7J6;A6NL76;C9JUM1;Q562X7;Q562X4;Q562X2;Q562X1;Q562T6;Q562T5;Q562T4;Q562T3;Q562T0;Q562R6;Q562R0;Q562Q9;Q562Q8;Q562Q6;Q562Q4;Q562Q0;Q562L3;Q562Y4;Q562X6;Q562X0;Q562W2;Q562U1;Q562U0;Q562T8;Q562R5;Q562Q2;Q562P8;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;Q6S8J3;A5A3E0;G5E9R0;E7EVS6;P0CG38;C9JZR7;A1E282;P0CG39;L0R5C4;Q9BYX7;Q562Z7;Q562X9;Q562S0;Q562N0;Q562L5;Q562Y6;Q562N8;Q562U2;Q562N6;Q562Y8;Q562N2;Q562M5;Q562M3;Q562P9;Q562N4;Q562L6;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 Q53GK6 85 95 ACTA1;ACTC1;ACTB;ACT;PS1TP5BP1;POTEE;POTEF;POTEI;POTEJ;POTEM;POTEKP;ACTG1 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 3 0.0012863 91.469 2 0.7257 0.99375 14.497 2 Median 0.7257 0.99375 14.497 2 0 Median NaN NaN NaN 0 0 Median 125550000 71661000 53892000 125550000 71661000 53892000 0 0 0 6087 1388;1420;914 6227 22080;22081 33349;33350;33351 33349 3 IWIFDGPTGEGR REPLLVTNGADNALRIWIFDGPTGEGRLLR ALRIWIFDGPTGEGRLLRFRMGHSAPLTNI R I W G R L 0 1 0 1 0 0 1 3 0 2 0 0 0 1 1 0 1 1 0 0 0 0 12 0 1346.6619 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 303 314 WDR36 WD repeat-containing protein 36 yes no 2 0.0017486 59.908 2 0.65872 0.95545 13.966 2 Median NaN NaN NaN 0 0 Median 0.65872 0.95545 13.966 2 0 Median 26503000 16111000 10392000 0 0 0 26503000 16111000 10392000 6088 404 6228 22082;22083 33352;33353;33354;33355 33353 4 IYADTFGDINYQEFAK SSQYSICFTLGSFAKIYADTFGDINYQEFA YADTFGDINYQEFAKRLWGDIYFNPKTRKF K I Y A K R 2 0 1 2 0 1 1 1 0 2 0 1 0 2 0 0 1 0 2 0 0 0 16 0 1893.8785 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 277 292 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 1.8916E-25 209.67 5 1 0.66046 0.83349 45.274 4 Median 0.6459 0.8328 7.1741 3 0 Median 1.2929 1.9627 NaN 1 0 Median 75859000 48716000 27143000 62741000 43109000 19632000 13118000 5607200 7511000 6089 654 6229 22084;22085;22086;22087;22088;22089 33356;33357;33358;33359;33360;33361;33362;33363;33364 33360 9 IYAGVGEFSFEEIR ASEEKKEKMMYCKEKIYAGVGEFSFEEIRA KIYAGVGEFSFEEIRAEVFRKKLKEQREAE K I Y I R A 1 1 0 0 0 0 3 2 0 2 0 0 0 2 0 1 0 0 1 1 0 0 14 0 1615.7882 O60566 O60566 403 416 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes yes 2 0.00048031 60.434 1 0.91578 1.2953 NaN 1 Median 0.91578 1.2953 NaN 1 0 Median NaN NaN NaN 0 0 Median 5497500 2793800 2703700 5497500 2793800 2703700 0 0 0 6090 1191 6230 22090 33365 33365 1 IYAPEAPYTSPDK DVRLLVACCLADIFRIYAPEAPYTSPDKLK FRIYAPEAPYTSPDKLKDIFMFITRQLKGL R I Y D K L 2 0 0 1 0 0 1 0 0 1 0 1 0 0 3 1 1 0 2 0 0 0 13 0 1450.698 Q9NTI5;B7Z5S1 Q9NTI5 90 102 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 2 0.025874 42.718 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1470700 0 1470700 1470700 0 1470700 0 0 0 6091 1759 6231 22091 33366 33366 1 IYDLNKPEAEPK DSNYLLTGGQDKLLRIYDLNKPEAEPKEIS LLRIYDLNKPEAEPKEISGHTSGIKKALWC R I Y P K E 1 0 1 1 0 0 2 0 0 1 1 2 0 0 2 0 0 0 1 0 0 0 12 1 1415.7296 Q9Y3F4;B0AZV0 Q9Y3F4 126 137 STRAP Serine-threonine kinase receptor-associated protein yes no 2;3 7.0505E-27 185.33 2 0.31651 0.38971 NaN 1 Median 0.31651 0.38971 NaN 1 0 Median NaN NaN NaN 0 0 Median 5769800 3926300 1843500 5769800 3926300 1843500 0 0 0 6092 1818 6232 22092;22093 33367;33368 33368 2 IYGESADAVK GVTAIELDEDTGTFRIYGESADAVKKARGF TGTFRIYGESADAVKKARGFLEFVEDFIQV R I Y V K K 2 0 0 1 0 0 1 1 0 1 0 1 0 0 0 1 0 0 1 1 0 0 10 0 1051.5186 A0A0F7KYT8;A0A0F7L0Q8;B4DXZ6;A0A0F7L1S3;P51114;B4DM78;E7EU85;B4DGH9;E9PFF5;B4DM21 A0A0F7KYT8 264 273 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 2 0.026787 42.348 1 0.35811 0.44637 NaN 1 Median 0.35811 0.44637 NaN 1 0 Median NaN NaN NaN 0 0 Median 48647000 32953000 15694000 48647000 32953000 15694000 0 0 0 6093 438 6233 22094 33369;33370 33369 2 IYGESADAVKK GVTAIELDEDTGTFRIYGESADAVKKARGF GTFRIYGESADAVKKARGFLEFVEDFIQVP R I Y K K A 2 0 0 1 0 0 1 1 0 1 0 2 0 0 0 1 0 0 1 1 0 0 11 1 1179.6136 A0A0F7KYT8;A0A0F7L0Q8;B4DXZ6;A0A0F7L1S3;P51114;B4DM78;E7EU85;B4DGH9;E9PFF5;B4DM21 A0A0F7KYT8 264 274 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 2;3 0.010705 80.688 4 0.76837 0.93756 15.311 4 Median 0.76837 0.93756 15.311 4 0 Median NaN NaN NaN 0 0 Median 25292000 14380000 10912000 25292000 14380000 10912000 0 0 0 6094 438 6234 22095;22096;22097;22098 33371;33372;33373;33374 33371 4 IYGETPEACR GVTAIELGEETCTFRIYGETPEACRQARSY TCTFRIYGETPEACRQARSYLEFSEDSVQV R I Y C R Q 1 1 0 0 1 0 2 1 0 1 0 0 0 0 1 0 1 0 1 0 0 0 10 0 1194.5339 P51116 P51116 274 283 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 2 0.0010083 115.49 3 1 0.75761 1.0373 29.826 4 Median 0.89376 1.2356 30.228 3 0 Plateau 0.96148 1.2577 NaN 1 0 Median 33429000 18790000 14639000 29244000 16498000 12746000 4184600 2291900 1892700 6095 1360 6235 22099;22100;22101;22102 33375;33376;33377;33378;33379;33380 33375 6 IYGFYDECK FFLLRGNHECASINRIYGFYDECKRRYNIK CASINRIYGFYDECKRRYNIKLWKTFTDCF R I Y C K R 0 0 0 1 1 0 1 1 0 1 0 1 0 1 0 0 0 0 2 0 0 0 9 0 1193.5063 A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;H0Y3Y6;P62136;A0A140VJS9;B3KXM2;V9HW04;P62140;B4DJ75;B7ZB67;E7ETD8;B4E163 V9HW04 133 141 PPP1CC;PPP1CB;PPP1CA;HEL-S-80p Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 2 0.001519 111.04 4 1 0.94136 1.227 2.6257 5 Median 0.9512 1.2297 1.7262 4 0 Median 0.74279 1.1721 NaN 1 0 Median 353770000 184650000 169120000 309810000 158050000 151770000 43954000 26600000 17354000 6096 1396;1397;279 6236 22103;22104;22105;22106;22107 33381;33382;33383;33384;33385;33386;33387;33388;33389;33390 33388 10 IYGISFPDPK STYWEGKADMETLQRIYGISFPDPKMLKEW ETLQRIYGISFPDPKMLKEWEKFQEEAKNR R I Y P K M 0 0 0 1 0 0 0 1 0 2 0 1 0 1 2 1 0 0 1 0 0 0 10 0 1135.5914 Q5M7Z9;Q53GX7;P26639;B4DKZ9;B3KTN2;B2RDX5 Q5M7Z9 297 306 TARS Threonine--tRNA ligase, cytoplasmic yes no 2 0.0052429 95.358 2 0.41753 0.52616 NaN 1 Median 0.41753 0.52616 NaN 1 0 Median NaN NaN NaN 0 0 Median 5552600 4833000 719670 5552600 4833000 719670 0 0 0 6097 1298 6237 22108;22109 33391;33392 33391 2 IYGLGSLALYEK AAKYARAERELKPARIYGLGSLALYEKADI PARIYGLGSLALYEKADIKGPEDKKKHLLI R I Y E K A 1 0 0 0 0 0 1 2 0 1 3 1 0 0 0 1 0 0 2 0 0 0 12 0 1325.7231 B4DL14;Q8TAS0;P36542;B4DFE6 B4DL14 21 32 ATP5C1 ATP synthase subunit gamma;ATP synthase subunit gamma, mitochondrial yes no 2 0.01195 56.548 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6098 824 6238 22110 33393 33393 1 IYHTIAYLTPLPQPNR PSTAILHFRLFVGARIYHTIAYLTPLPQPN YHTIAYLTPLPQPNRALSFFVGYGVTLSMA R I Y N R A 1 1 1 0 0 1 0 0 1 2 2 0 0 0 3 0 2 0 2 0 0 0 16 0 1896.0258 Q6LET6;A0A024RAX2;P10620;F5H760 Q6LET6 115 130 MGST1 Microsomal glutathione S-transferase 1 yes no 3 0.012864 15.99 1 0.40285 0.54155 NaN 1 Median 0.40285 0.54155 NaN 1 0 Median NaN NaN NaN 0 0 Median 15487000 10039000 5447900 15487000 10039000 5447900 0 0 0 6099 251 6239 22111 33394 33394 1 IYISNTFSPSK QEAIKKPLTQKRKLRIYISNTFSPSKAEGD RKLRIYISNTFSPSKAEGDSAGTAGTPGGT R I Y S K A 0 0 1 0 0 0 0 0 0 2 0 1 0 1 1 3 1 0 1 0 0 0 11 0 1255.6449 J3KMX2;B9EGA3;Q92925 J3KMX2 121 131 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes no 2 0.0040005 69.275 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1587600 1587600 0 1587600 1587600 0 0 0 0 6100 927 6240 22112 33395 33395 1 IYLILEYAPR PNILRLYNYFYDRRRIYLILEYAPRGELYK YDRRRIYLILEYAPRGELYKELQKSCTFDE R I Y P R G 1 1 0 0 0 0 1 0 0 2 2 0 0 0 1 0 0 0 2 0 0 0 10 0 1249.7071 B2RC06;J3KT86;Q96GD4;J3KTD6;J3QLN8;J3QR41 B2RC06 150 159 AURKB Aurora kinase B no no 2 8.1262E-06 136.27 4 2 0.90568 1.2916 10.65 6 Median 0.95809 1.326 7.4964 4 0 Median 0.73562 1.1481 12.984 2 0 Median 296110000 158270000 137840000 238320000 123780000 114540000 57787000 34488000 23299000 6101 731;1686 6241 22113;22114;22115;22116;22117;22118 33396;33397;33398;33399;33400;33401;33402;33403;33404;33405;33406;33407 33401 12 IYLTADNLVLNLQDESFTR AAQNISKTIATSQNRIYLTADNLVLNLQDE ADNLVLNLQDESFTRSDSLIKGKK______ R I Y T R S 1 1 2 2 0 1 1 0 0 1 4 0 0 1 0 1 2 0 1 1 0 0 19 0 2224.1376 J3KPX7;Q99623;Q9BXV3 J3KPX7 271 289 PHB2 Prohibitin-2 yes no 2 5.8662E-104 220.4 3 2 0.61306 0.94733 40.706 5 Median 0.59679 0.82884 26.168 3 0 Median 0.90724 1.4205 57.292 2 0 Median 496880000 293000000 203870000 443160000 270590000 172570000 53718000 22417000 31301000 6102 1133 6242 22119;22120;22121;22122;22123 33408;33409;33410;33411;33412;33413;33414;33415;33416;33417 33412 10 IYPDPELEVQVLGLPIR VFKCPEDQLPLDYAKIYPDPELEVQVLGLP PDPELEVQVLGLPIRCIHSEEGCRWSGPLR K I Y I R C 0 1 0 1 0 1 2 1 0 2 3 0 0 0 3 0 0 0 1 2 0 0 17 0 1950.0826 A0A0C4DFM9;B4DUU9;F6SA91;A0A024QZ59;Q9BUZ4;J9JIG0 A0A0C4DFM9 66 82 TRAF4 TNF receptor-associated factor 4 yes no 2 4.0233E-07 76.655 1 0.89272 1.2191 NaN 1 Median 0.89272 1.2191 NaN 1 0 Median NaN NaN NaN 0 0 Median 3676000 2108500 1567500 3676000 2108500 1567500 0 0 0 6103 5 6243 22124 33418 33418 1 IYPTFLHLHGK RELQCLTPRGRYDIRIYPTFLHLHGKTFDY YDIRIYPTFLHLHGKTFDYKIPYTTVLRLF R I Y G K T 0 0 0 0 0 0 0 1 2 1 2 1 0 1 1 0 1 0 1 0 0 0 11 0 1324.7292 A0A024R4Z6;Q08945;E9PMD4 A0A024R4Z6 218 228 SSRP1 FACT complex subunit SSRP1 yes no 3 0.0005591 91.658 4 2 0.80306 1.1362 6.5462 6 Median 0.84376 1.1039 4.6137 4 0 Median 0.76379 1.2169 0.16287 2 0 Median 519760000 283880000 235870000 376380000 203840000 172540000 143380000 80048000 63332000 6104 132 6244 22125;22126;22127;22128;22129;22130 33419;33420;33421;33422;33423;33424;33425;33426;33427;33428;33429;33430 33425 12 IYQDAYR RIAQRWRELPDSKKKIYQDAYRAEWQVYKE ELPDSKKKIYQDAYRAEWQVYKEEISRFKE K I Y Y R A 1 1 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 0 7 0 927.44503 Q6LES8;E5KSX8;E5KSU5;Q00059;H7BYN3 Q6LES8 98 104 TFAM Transcription factor A, mitochondrial yes no 2 0.04948 50.966 1 1.5387 2.0415 NaN 1 Median NaN NaN NaN 0 0 Median 1.5387 2.0415 NaN 1 0 Median 2618400 1177200 1441300 0 0 0 2618400 1177200 1441300 6105 1002 6245 22131 33431 33431 1 IYQGTLGAIK LELRLRDFLLDIEDRIYQGTLGAIKVTDRH DIEDRIYQGTLGAIKVTDRHIWRSALESGR R I Y I K V 1 0 0 0 0 1 0 2 0 2 1 1 0 0 0 0 1 0 1 0 0 0 10 0 1062.6073 D3DS96;Q9NRL2;Q59G54 D3DS96 989 998 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 0.047907 38.303 1 0.5366 0.76408 NaN 1 Median NaN NaN NaN 0 0 Median 0.5366 0.76408 NaN 1 0 Median 6242600 4262400 1980200 0 0 0 6242600 4262400 1980200 6106 979 6246 22132 33432 33432 1 IYQIYEGTSQIQR FNTEYPVEKLMRDAKIYQIYEGTSQIQRLI AKIYQIYEGTSQIQRLIVAREHIDKYKN__ K I Y Q R L 0 1 0 0 0 3 1 1 0 3 0 0 0 0 0 1 1 0 2 0 0 0 13 0 1597.81 A0A0S2Z366;Q5T4U5;Q5HYG7;P11310;B7Z9I1;B4DWX6;B4DJE7;B4DVB1 A0A0S2Z366 396 408 ACADM;DKFZp686M24262 Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 1.2281E-16 141.95 4 0.29495 0.39519 3.6133 2 Median 0.29495 0.39519 3.6133 2 0 Median NaN NaN NaN 0 0 Median 21479000 17617000 3862600 21479000 17617000 3862600 0 0 0 6107 449 6247 22133;22134;22135;22136 33433;33434;33435;33436;33437;33438 33437 6 IYQLLAK EQIANTETTEDVKGRIYQLLAKASYKKAII TTEDVKGRIYQLLAKASYKKAIILTREATG R I Y A K A 1 0 0 0 0 1 0 0 0 1 2 1 0 0 0 0 0 0 1 0 0 0 7 0 847.51674 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 520 526 NCAPD2 Condensin complex subunit 1 yes no 2 0.014828 99.919 3 2 0.61478 0.77036 7.8706 5 Median 0.63532 0.80445 2.407 3 0 Plateau 0.4464 0.69139 3.8319 2 0 Median 198820000 130880000 67944000 145810000 93703000 52107000 53012000 37176000 15836000 6108 757 6248 22137;22138;22139;22140;22141 33439;33440;33441;33442;33443;33444;33445;33446 33441 8 IYQNGESFQPNCK CRAQSEGRPCEYNSRIYQNGESFQPNCKHQ SRIYQNGESFQPNCKHQCTCIDGAVGCIPL R I Y C K H 0 0 2 0 1 2 1 1 0 1 0 1 0 1 1 1 0 0 1 0 0 0 13 0 1583.7038 Q6FI18;O00622;B4DI61;Q9UID7 Q6FI18 106 118 CYR61 Protein CYR61 yes no 2 6.8095E-20 180.66 3 1.5299 2.0153 10.727 3 Median 1.5299 2.0153 10.727 3 0 Median NaN NaN NaN 0 0 Median 10536000 3690400 6845500 10536000 3690400 6845500 0 0 0 6109 1168 6249 22142;22143;22144 33447;33448;33449;33450;33451;33452 33449 6 IYQNIQDGSLDLNAAESGVQHK TGENVEDAFLEAAKKIYQNIQDGSLDLNAA GSLDLNAAESGVQHKPSAPQGGRLTSEPQP K I Y H K P 2 0 2 2 0 3 1 2 1 2 2 1 0 0 0 2 0 0 1 1 0 0 22 0 2399.1717 A0A024R845;P61106 A0A024R845 172 193 RAB14 Ras-related protein Rab-14 yes no 3 7.5923E-07 102.43 2 0.50162 0.61199 NaN 1 Median 0.50162 0.61199 NaN 1 0 Median NaN NaN NaN 0 0 Median 4817400 3513400 1304100 4817400 3513400 1304100 0 0 0 6110 192 6250 22145;22146 33453;33454;33455 33454 3 IYQNIQDGSLDLNAAESGVQHKPSAPQGGR TGENVEDAFLEAAKKIYQNIQDGSLDLNAA ESGVQHKPSAPQGGRLTSEPQPQREGCGC_ K I Y G R L 3 1 2 2 0 4 1 4 1 2 2 1 0 0 2 3 0 0 1 1 0 0 30 1 3149.549 A0A024R845;P61106 A0A024R845 172 201 RAB14 Ras-related protein Rab-14 yes no 4 0.0083533 22.081 1 0.50383 0.66196 NaN 1 Median 0.50383 0.66196 NaN 1 0 Median NaN NaN NaN 0 0 Median 12716000 6573000 6143300 12716000 6573000 6143300 0 0 0 6111 192 6251 22147 33456 33456 1 IYQVLDFR WIRFGYDPRKNPDAKIYQVLDFRIRCGMKH RKNPDAKIYQVLDFRIRCGMKHGYAPSDLP K I Y F R I 0 1 0 1 0 1 0 0 0 1 1 0 0 1 0 0 0 0 1 1 0 0 8 0 1052.5655 Q5T7U1;Q9Y5Q8;Q5T7U0;B7Z1V3;Q9NXK9;H7BY84 Q5T7U1 246 253 GTF3C5 General transcription factor 3C polypeptide 5 yes no 2 0.0087454 77.282 1 0.67095 0.92483 NaN 1 Median 0.67095 0.92483 NaN 1 0 Median NaN NaN NaN 0 0 Median 4829200 3116700 1712500 4829200 3116700 1712500 0 0 0 6112 1572 6252 22148 33457 33457 1 IYQYVINK LDIRLTKDNNLTTGKIYQYVINKERKGDYL NNLTTGKIYQYVINKERKGDYLGKTVQVVP K I Y N K E 0 0 1 0 0 1 0 0 0 2 0 1 0 0 0 0 0 0 2 1 0 0 8 0 1039.5702 P17812;B4DMB5;B7Z9C4 P17812 93 100 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.035107 47.916 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1689400 1689400 0 1689400 1689400 0 0 0 0 6113 1278 6253 22149 33458 33458 1 IYSHSLLPVLR CGDQTLGDLLLTPTRIYSHSLLPVLRSGHV TPTRIYSHSLLPVLRSGHVKAFAHITGGGL R I Y L R S 0 1 0 0 0 0 0 0 1 1 3 0 0 0 1 2 0 0 1 1 0 0 11 0 1296.7554 Q3B7A7;Q59HH3;P22102;B4DJ93 Q3B7A7 661 671 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 3 0.00058211 65.627 2 0.26699 0.36473 9.3858 2 Median 0.26699 0.36473 9.3858 2 0 Median NaN NaN NaN 0 0 Median 17393000 13422000 3970900 17393000 13422000 3970900 0 0 0 6114 1289 6254 22150;22151 33459;33460;33461 33461 3 IYSINPK RQGHEAYVEMARKNKIYSINPKKQPWHKME VEMARKNKIYSINPKKQPWHKMELREQELM K I Y P K K 0 0 1 0 0 0 0 0 0 2 0 1 0 0 1 1 0 0 1 0 0 0 7 0 833.4647 Q8WWQ0 Q8WWQ0 983 989 PHIP PH-interacting protein yes yes 2 0.014574 94.407 2 2 0.78574 1.1975 11.028 4 Median 0.88646 1.0922 16.729 2 0 Median 0.78338 1.1975 0.49753 2 0 Median 96454000 51462000 44993000 50248000 26253000 23995000 46207000 25209000 20998000 6115 1668 6255 22152;22153;22154;22155 33462;33463;33464;33465;33466 33463 5 IYSLSCGK ______________________________ SSLNEVKIYSLSCGKSLPEWLSDRKKRALQ K I Y G K S 0 0 0 0 1 0 0 1 0 1 1 1 0 0 0 2 0 0 1 0 0 0 8 0 926.45315 Q9BSC4 Q9BSC4 11 18 NOL10 Nucleolar protein 10 yes yes 2 0.014793 65.252 1 1 0.45761 0.60571 25.214 2 Median 0.39977 0.50679 NaN 1 0 Median 0.52383 0.72393 NaN 1 0 Median 15663000 10099000 5563600 11459000 7481600 3977700 4203300 2617400 1585900 6116 1710 6256 22156;22157 33467;33468 33467 2 IYVDDGLISLQVK LDYKNICKVVEVGSKIYVDDGLISLQVKQK SKIYVDDGLISLQVKQKGADFLVTEVENGG K I Y V K Q 0 0 0 2 0 1 0 1 0 2 2 1 0 0 0 1 0 0 1 2 0 0 13 0 1461.8079 V9HWB8;P14618;B4DNK4;H3BTN5;A0A024R5Z9;B4DRT3;A0A024R609;H3BQ34 V9HWB8 174 186 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 2 2.9606E-22 169.99 4 0.78716 0.98522 26.045 4 Median 0.78716 0.98522 26.045 4 0 Median NaN NaN NaN 0 0 Median 85153000 44612000 40541000 85153000 44612000 40541000 0 0 0 6117 1267 6257 22158;22159;22160;22161 33469;33470;33471;33472;33473;33474;33475;33476;33477 33475 9 IYVGLSK KADVEKSLPPKKEVKIYVGLSKMQREWYTR LPPKKEVKIYVGLSKMQREWYTRILMKDID K I Y S K M 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 1 0 0 1 1 0 0 7 0 778.45889 O60264;B7ZAX9;B4DZC0;Q4W5H1 O60264 412 418 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 0.015517 92.467 2 2.3826 2.9859 15.502 2 Median 2.3826 2.9859 15.502 2 0 Median NaN NaN NaN 0 0 Median 72839000 23751000 49087000 72839000 23751000 49087000 0 0 0 6118 1189 6258 22162;22163 33478;33479;33480 33480 3 IYVGNLPPDIR GGGVIRGPAGNNDCRIYVGNLPPDIRTKDI NDCRIYVGNLPPDIRTKDIEDVFYKYGAIR R I Y I R T 0 1 1 1 0 0 0 1 0 2 1 0 0 0 2 0 0 0 1 1 0 0 11 0 1255.6925 J3KTL2;Q07955;Q59FA2;A8K1L8;J3QQV5;J3KSW7 J3KTL2 18 28 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 6.8375E-07 119.68 6 2 0.53489 0.71342 33.463 6 Median 0.51561 0.68869 8.7993 4 0 Median 0.83582 1.2716 2.1434 2 0 Median 119160000 70804000 48359000 83937000 53295000 30642000 35226000 17509000 17717000 6119 1139 6259 22164;22165;22166;22167;22168;22169;22170;22171 33481;33482;33483;33484;33485;33486;33487;33488;33489;33490;33491;33492;33493;33494;33495;33496;33497;33498;33499;33500 33491 20 IYVGNLPTDVR MSGWADERGGEGDGRIYVGNLPTDVREKDL GDGRIYVGNLPTDVREKDLEDLFYKYGRIR R I Y V R E 0 1 1 1 0 0 0 1 0 1 1 0 0 0 1 0 1 0 1 2 0 0 11 0 1245.6717 Q13242;A8K3M9;H0YIB4;S4R3G0;B4DFT9 Q13242 16 26 SRSF9 Serine/arginine-rich splicing factor 9 yes no 2 0.00048713 79.974 2 2 0.71103 0.99619 32.861 4 Median 0.56382 0.75753 1.1497 2 0 Median 0.94125 1.3364 3.9683 2 0 Median 46503000 25608000 20895000 23432000 15545000 7887200 23072000 10063000 13008000 6120 1467 6260 22172;22173;22174;22175 33501;33502;33503;33504;33505;33506;33507 33502 7 IYVISLAEPR IGSCTQQDVELHVQKIYVISLAEPRLPLQL LHVQKIYVISLAEPRLPLQLDDAVRPEAEG K I Y P R L 1 1 0 0 0 0 1 0 0 2 1 0 0 0 1 1 0 0 1 1 0 0 10 0 1159.6601 D3DP78;A0A140VJW5;P14868;C9J7S3;C9JLC1;Q53R85;C9JQM9 D3DP78 109 118 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.050744 66.692 1 0.41765 0.5749 NaN 1 Median 0.41765 0.5749 NaN 1 0 Median NaN NaN NaN 0 0 Median 10141000 7959000 2182200 10141000 7959000 2182200 0 0 0 6121 504 6261 22176 33508 33508 0 IYVLLRR TQTYQPYNKDWIKEKIYVLLRRQAQQAGK_ NKDWIKEKIYVLLRRQAQQAGK________ K I Y R R Q 0 2 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 1 1 0 0 7 1 931.59672 A0A024R6D4;P84090 A0A024R6D4 91 97 ERH Enhancer of rudimentary homolog yes no 3 0.013449 46.37 1 0.58625 0.79024 NaN 1 Median 0.58625 0.79024 NaN 1 0 Median NaN NaN NaN 0 0 Median 22462000 14241000 8220900 22462000 14241000 8220900 0 0 0 6122 159 6262 22177 33509 33509 1 KADEVLEILK RQLSRFYDDAIVSQKKADEVLEILKTASDD IVSQKKADEVLEILKTASDDRECENQLVLL K K A L K T 1 0 0 1 0 0 2 0 0 1 2 2 0 0 0 0 0 0 0 1 0 0 10 1 1156.6703 O75643;A4FU77 O75643 285 294 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 9.4206E-08 128.01 3 0.59514 0.73067 6.9947 2 Median 0.59514 0.73067 6.9947 2 0 Median NaN NaN NaN 0 0 Median 50728000 33295000 17433000 50728000 33295000 17433000 0 0 0 6123 1206 6263 22178;22179;22180 33510;33511;33512;33513 33513 4 KADIDLTK AIKGVGRRYAHVVLRKADIDLTKRAGELTE YAHVVLRKADIDLTKRAGELTEDEVERVIT R K A T K R 1 0 0 2 0 0 0 0 0 1 1 2 0 0 0 0 1 0 0 0 0 0 8 1 902.5073 P62269 P62269 47 54 RPS18 40S ribosomal protein S18 yes yes 2 9.7028E-24 195.05 4 0.84808 1.0376 3.5804 4 Median 0.84808 1.0376 3.5804 4 0 Median NaN NaN NaN 0 0 Median 616190000 329110000 287080000 616190000 329110000 287080000 0 0 0 6124 1402 6264 22181;22182;22183;22184 33514;33515;33516;33517;33518 33516 5 KADIDLTKR AIKGVGRRYAHVVLRKADIDLTKRAGELTE AHVVLRKADIDLTKRAGELTEDEVERVITI R K A K R A 1 1 0 2 0 0 0 0 0 1 1 2 0 0 0 0 1 0 0 0 0 0 9 2 1058.6084 P62269 P62269 47 55 RPS18 40S ribosomal protein S18 yes yes 3 0.0012673 87.298 2 0.78767 0.94307 44.898 2 Median 0.78767 0.94307 44.898 2 0 Median NaN NaN NaN 0 0 Median 16293000 8801400 7492000 16293000 8801400 7492000 0 0 0 6125 1402 6265 22185;22186 33519;33520 33520 2 KADTEEEFLAFR DTPTSSKPQPKRSLRKADTEEEFLAFRKQT SLRKADTEEEFLAFRKQTPSAGKAMHTPKP R K A F R K 2 1 0 1 0 0 3 0 0 0 1 1 0 2 0 0 1 0 0 0 0 0 12 1 1454.7042 P46013 P46013 1761 1772 MKI67 Antigen KI-67 yes yes 2;3 0.00023127 91.701 6 4 0.87064 1.1455 17.411 10 Median 0.9729 1.2792 8.7822 6 0 Median 0.57019 0.90544 2.8091 4 0 Median 176480000 96710000 79770000 116150000 60225000 55929000 60326000 36485000 23840000 6126 1342 6266 22187;22188;22189;22190;22191;22192;22193;22194;22195;22196 33521;33522;33523;33524;33525;33526;33527;33528;33529;33530;33531 33524 8 KADTEEEFLAFRK DTPTSSKPQPKRSLRKADTEEEFLAFRKQT LRKADTEEEFLAFRKQTPSAGKAMHTPKPA R K A R K Q 2 1 0 1 0 0 3 0 0 0 1 2 0 2 0 0 1 0 0 0 0 0 13 2 1582.7991 P46013 P46013 1761 1773 MKI67 Antigen KI-67 yes yes 3 2.5276E-38 187.45 4 2 0.84688 1.0361 26.57 6 Median 0.87207 1.0784 8.8872 4 0 Median 0.38879 0.67382 11.247 2 0 Median 261970000 142950000 119020000 240310000 128280000 112040000 21656000 14674000 6982200 6127 1342 6267 22197;22198;22199;22200;22201;22202 33532;33533;33534;33535;33536;33537;33538;33539 33537 8 KADVEEEFLAFR DTPTNTKQRPKRSLKKADVEEEFLAFRKLT SLKKADVEEEFLAFRKLTPSAGKAMHTPKA K K A F R K 2 1 0 1 0 0 3 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 12 1 1452.7249 P46013 P46013 1883 1894 MKI67 Antigen KI-67 yes yes 2;3 5.7388E-13 134.75 7 2 0.88153 1.1716 17.096 7 Median 0.87434 1.1554 10.53 6 0 Median 0.98947 1.7026 NaN 1 0 Median 262640000 151530000 111110000 220200000 123240000 96961000 42447000 28293000 14153000 6128 1342 6268 22203;22204;22205;22206;22207;22208;22209;22210;22211 33540;33541;33542;33543;33544;33545;33546;33547;33548;33549;33550;33551;33552;33553;33554;33555;33556;33557;33558;33559;33560 33546 21 KADVEEEFLAFRK DTPTNTKQRPKRSLKKADVEEEFLAFRKLT LKKADVEEEFLAFRKLTPSAGKAMHTPKAA K K A R K L 2 1 0 1 0 0 3 0 0 0 1 2 0 2 0 0 0 0 0 1 0 0 13 2 1580.8199 P46013 P46013 1883 1895 MKI67 Antigen KI-67 yes yes 3 1.1185E-22 157.22 4 0.892 1.122 8.8811 4 Median 0.892 1.122 8.8811 4 0 Median NaN NaN NaN 0 0 Median 216760000 115140000 101610000 216760000 115140000 101610000 0 0 0 6129 1342 6269 22212;22213;22214;22215 33561;33562;33563;33564;33565;33566;33567;33568;33569 33567 9 KADVEEEFLALR DTPTSTKQWPKRSLRKADVEEEFLALRKLT SLRKADVEEEFLALRKLTPSAGKAMLTPKP R K A L R K 2 1 0 1 0 0 3 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 12 1 1418.7405 P46013 P46013 1153 1164 MKI67 Antigen KI-67 yes no 2;3 1.0984E-24 196.67 8 0.79842 1.0492 29.123 8 Median 0.79842 1.0492 29.123 8 0 Median NaN NaN NaN 0 0 Median 116960000 63589000 53371000 116960000 63589000 53371000 0 0 0 6130 1342 6270 22216;22217;22218;22219;22220;22221;22222;22223 33570;33571;33572;33573;33574;33575;33576;33577;33578;33579 33571 10 KADVEEEFLALRK DTPTSTKQWPKRSLRKADVEEEFLALRKLT LRKADVEEEFLALRKLTPSAGKAMLTPKPA R K A R K L 2 1 0 1 0 0 3 0 0 0 2 2 0 1 0 0 0 0 0 1 0 0 13 2 1546.8355 P46013 P46013 1153 1165 MKI67 Antigen KI-67 yes no 3 8.6781E-11 137.09 4 2 0.91354 1.2648 10.525 6 Linear 0.94851 1.1152 6.6783 4 0 Linear 0.54621 0.96315 10.491 2 0 Median 648930000 332550000 316390000 593630000 298660000 294970000 55308000 33889000 21419000 6131 1342 6271 22224;22225;22226;22227;22228;22229 33580;33581;33582;33583;33584;33585;33586;33587;33588;33589;33590;33591 33588 12 KADVEEESLALR GTPTIFKPQSKRSLRKADVEEESLALRKRT SLRKADVEEESLALRKRTPSVGKAMDTPKP R K A L R K 2 1 0 1 0 0 3 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 12 1 1358.7042 P46013 P46013 2245 2256 MKI67 Antigen KI-67 yes yes 2;3 2.6133E-05 91.313 5 3 0.74691 0.98382 54.426 8 Median 0.89147 1.1765 17.391 5 0 Median 0.26436 0.4147 5.0427 3 0 Median 106710000 67873000 38833000 61092000 32231000 28861000 45615000 35643000 9972300 6132 1342 6272 22230;22231;22232;22233;22234;22235;22236;22237 33592;33593;33594;33595;33596;33597;33598;33599;33600;33601 33596 10 KADVEEESLALRK GTPTIFKPQSKRSLRKADVEEESLALRKRT LRKADVEEESLALRKRTPSVGKAMDTPKPA R K A R K R 2 1 0 1 0 0 3 0 0 0 2 2 0 0 0 1 0 0 0 1 0 0 13 2 1486.7991 P46013 P46013 2245 2257 MKI67 Antigen KI-67 yes yes 3 2.7357E-08 125.84 4 2 0.89921 1.1816 5.8329 6 Median 0.93876 1.1481 7.0492 4 0 Median 0.69411 1.2145 2.0323 2 0 Median 357130000 177580000 179550000 319960000 157110000 162850000 37172000 20469000 16702000 6133 1342 6273 22238;22239;22240;22241;22242;22243 33602;33603;33604;33605;33606;33607;33608;33609;33610;33611;33612;33613;33614 33610 13 KADVEGELLACR DTPTSTKQRPKRSIRKADVEGELLACRNLM SIRKADVEGELLACRNLMPSAGKAMHTPKP R K A C R N 2 1 0 1 1 0 2 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 12 1 1359.6816 P46013 P46013 1275 1286 MKI67 Antigen KI-67 yes yes 2;3 4.6043E-05 134.75 6 0.96718 1.2836 13.189 3 Median 0.96718 1.2836 13.189 3 0 Median NaN NaN NaN 0 0 Median 114300000 55809000 58491000 114300000 55809000 58491000 0 0 0 6134 1342 6274 22244;22245;22246;22247;22248;22249 33615;33616;33617;33618;33619;33620;33621;33622;33623 33616 9 KAEAGAGSATEFQFR RDTYRRSAVPPGADKKAEAGAGSATEFQFR KAEAGAGSATEFQFRGGFGRGRGQPPQ___ K K A F R G 4 1 0 0 0 1 2 2 0 0 0 1 0 2 0 1 1 0 0 0 0 0 15 1 1568.7583 P46783;Q59GE4;Q9NQ39 P46783 139 153 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 2;3 6.9131E-35 209.22 8 4 0.877 1.1894 18.467 11 Median 0.83217 1.1025 8.5095 7 0 Median 0.90808 1.5349 6.9578 4 0 Median 895190000 473530000 421670000 685790000 364350000 321440000 209400000 109180000 100220000 6135 1347 6275 22250;22251;22252;22253;22254;22255;22256;22257;22258;22259;22260;22261 33624;33625;33626;33627;33628;33629;33630;33631;33632;33633;33634;33635;33636;33637;33638;33639;33640;33641;33642;33643;33644 33625 21 KAEAVVNTVDISER RKKRRMLKRLEQTRKKAEAVVNTVDISERE KKAEAVVNTVDISEREKVAQLRSLYKKAGL K K A E R E 2 1 1 1 0 0 2 0 0 1 0 1 0 0 0 1 1 0 0 3 0 0 14 1 1529.8049 Q8IY81;B4DKU3 Q8IY81 763 776 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2;3 1.1019E-20 174.46 7 4 0.68666 0.93097 8.0546 7 Median 0.75326 0.99522 5.1725 4 0 Median 0.5593 0.89758 3.9086 3 0 Plateau 155430000 88134000 67291000 119480000 68452000 51027000 35947000 19683000 16265000 6136 1628 6276 22262;22263;22264;22265;22266;22267;22268;22269;22270;22271;22272 33645;33646;33647;33648;33649;33650;33651;33652;33653;33654;33655;33656;33657;33658;33659;33660;33661 33645 17 KAEAVVNTVDISEREK RKKRRMLKRLEQTRKKAEAVVNTVDISERE AEAVVNTVDISEREKVAQLRSLYKKAGLGK K K A E K V 2 1 1 1 0 0 3 0 0 1 0 2 0 0 0 1 1 0 0 3 0 0 16 2 1786.9425 Q8IY81;B4DKU3 Q8IY81 763 778 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 3 6.0876E-34 188 4 2 0.73851 0.90948 13.042 6 Median 0.79633 0.95417 15.236 4 0 Median 0.52267 0.90227 1.2276 2 0 Median 134860000 73911000 60946000 116990000 62413000 54576000 17869000 11498000 6370100 6137 1628 6277 22273;22274;22275;22276;22277;22278 33662;33663;33664;33665;33666;33667;33668;33669;33670;33671 33663 10 KAEDIENDALSPEEQEECK KSVVSYWNLALIFHRKAEDIENDALSPEEQ IENDALSPEEQEECKNYLRKTRDYLIKIID R K A C K N 2 0 1 2 1 1 6 0 0 1 1 2 0 0 1 1 0 0 0 0 0 0 19 1 2232.9692 D3DX73;P49792 D3DX73 690 708 hCG_1994636;RANBP2 E3 SUMO-protein ligase RanBP2 yes no 3 0.0011385 77.08 3 0.35879 0.4303 NaN 1 Median 0.35879 0.4303 NaN 1 0 Median NaN NaN NaN 0 0 Median 5834700 4207100 1627600 5834700 4207100 1627600 0 0 0 6138 987 6278 22279;22280;22281 33672;33673;33674;33675 33674 4 KAEEATEAQEVVEATPEGACTEPR KKRKRKELRAKEKARKAEEATEAQEVVEAT EVVEATPEGACTEPREPPGLIFNKVEVSED R K A P R E 5 1 0 0 1 1 7 1 0 0 0 1 0 0 2 0 3 0 0 2 0 0 24 1 2601.1864 B3KNS8;O75683 B3KNS8 170 193 SURF6 Surfeit locus protein 6 yes no 3 1.17E-07 99.387 4 2 0.57787 0.86603 11.291 3 Median 0.80661 1.0391 NaN 1 0 Median 0.57132 0.85549 1.7317 2 0 Median 17906000 9981900 7924100 8966800 4172000 4794800 8939100 5809800 3129200 6139 760 6279 22282;22283;22284;22285;22286;22287 33676;33677;33678;33679;33680;33681;33682;33683 33676 8 KAEEELGELEAK YDTRKSRLELQKDVRKAEEELGELEAKLNE DVRKAEEELGELEAKLNENLRRNIERINNE R K A A K L 2 0 0 0 0 0 5 1 0 0 2 2 0 0 0 0 0 0 0 0 0 0 12 1 1344.6773 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 684 695 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 6.5634E-32 210.44 4 2 0.62738 0.78181 40.311 5 Median 0.51565 0.63814 16.645 3 0 Median 0.82675 1.3197 6.6972 2 0 Median 79979000 51660000 28319000 45639000 32454000 13185000 34340000 19206000 15134000 6140 663 6280 22288;22289;22290;22291;22292;22293 33684;33685;33686;33687;33688;33689;33690;33691;33692;33693 33685 10 KAEGEPQEESPLK SPVSKRRGSQEKQTKKAEGEPQEESPLKSK TKKAEGEPQEESPLKSKSQEEPKDTFEHDP K K A L K S 1 0 0 0 0 1 4 1 0 0 1 2 0 0 2 1 0 0 0 0 0 0 13 1 1440.7096 Q6DCA8;E9PK09;E9PQN2;E9PKI6;E9PK91;Q9NYF8;E9PJA7 Q6DCA8 168 180 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2 0.0062432 43.68 1 0.4569 0.66366 NaN 1 Median NaN NaN NaN 0 0 Median 0.4569 0.66366 NaN 1 0 Median 3306600 2215600 1090900 0 0 0 3306600 2215600 1090900 6141 1036 6281 22294 33694 33694 1 KAEGTVFTEEDFQK GRKACDRPVAKTKKKKAEGTVFTEEDFQKF KKAEGTVFTEEDFQKFQQEYFGS_______ K K A Q K F 1 0 0 1 0 1 3 1 0 0 0 2 0 2 0 0 2 0 0 1 0 0 14 1 1627.773 A0A024R1T1;Q86WX3 A0A024R1T1 115 128 RPS19BP1 Active regulator of SIRT1 yes no 3 0.033548 19.527 1 1 0.93363 1.251 12.248 2 Median 1.1108 1.3641 NaN 1 0 Median 0.78472 1.1472 NaN 1 0 Median 13149000 6881100 6267600 9242800 4839000 4403800 3905900 2042200 1863700 6142 67 6282 22295;22296 33695;33696;33697 33695 3 KAEIDILAAEYISTVK NFQLMRELDQRTEDKKAEIDILAAEYISTV AEIDILAAEYISTVKTLSPDQRVERLQKIQ K K A V K T 3 0 0 1 0 0 2 0 0 3 1 2 0 0 0 1 1 0 1 1 0 0 16 1 1762.9717 E9PEN0;B7Z6R2;A0A1B0GW41;Q8WYH8 E9PEN0 39 54 ING5 Inhibitor of growth protein 5 yes no 3 2.6077E-06 108.25 4 2 0.85684 1.0602 0.49882 2 Median 0.85684 1.0602 0.49882 2 0 Median NaN NaN NaN 0 0 Median 18652000 10289000 8362900 15217000 6854600 8362900 3434600 3434600 0 6143 520 6283 22297;22298;22299;22300;22301;22302 33698;33699;33700;33701;33702;33703;33704 33698 7 KAEQGSEEEGEGEEEEEEGGESK IKEKEPPKQGKEKAKKAEQGSEEEGEGEEE EGEGEEEEEEGGESKADDPYAHLSKKEKKK K K A S K A 1 0 0 0 0 1 12 5 0 0 0 2 0 0 0 2 0 0 0 0 0 0 23 1 2480.9787 Q8NE71;B4DNU2;Q5STZ8 Q8NE71 223 245 ABCF1 ATP-binding cassette sub-family F member 1 yes no 3 3.2236E-13 80.835 1 1.2214 1.8207 NaN 1 Median NaN NaN NaN 0 0 Median 1.2214 1.8207 NaN 1 0 Median 4093100 1879100 2214000 0 0 0 4093100 1879100 2214000 6144 1653 6284 22303 33705;33706 33706 2 KAEVVQVIR QRRAENLKRRLENERKAEVVQVIRNPAKLK RLENERKAEVVQVIRNPAKLKRAKKKQLRS R K A I R N 1 1 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 0 3 0 0 9 1 1040.6342 Q9H6F5 Q9H6F5 315 323 CCDC86 Coiled-coil domain-containing protein 86 yes yes 2 3.8067E-29 189.7 4 0.77518 1.0204 3.633 4 Median 0.77518 1.0204 3.633 4 0 Median NaN NaN NaN 0 0 Median 430030000 238650000 191380000 430030000 238650000 191380000 0 0 0 6145 1737 6285 22304;22305;22306;22307 33707;33708;33709;33710;33711 33711 5 KAGEIWK IKSDHPGISITDLSKKAGEIWKGMSKEKKE ISITDLSKKAGEIWKGMSKEKKEEWDRKAE K K A W K G 1 0 0 0 0 0 1 1 0 1 0 2 0 0 0 0 0 1 0 0 0 0 7 1 830.46504 A0A024R4Z6;Q08945;A0A0U1RRK2 A0A024R4Z6 580 586 SSRP1 FACT complex subunit SSRP1 yes no 2 0.043002 57.281 1 0.65041 1.0217 NaN 1 Median NaN NaN NaN 0 0 Median 0.65041 1.0217 NaN 1 0 Median 11773000 6520600 5252500 0 0 0 11773000 6520600 5252500 6146 132 6286 22308 33712 33712 1 KAGLSEEDDSLVDVYYR RESGSEQERVSKKPKKAGLSEEDDSLVDVY GLSEEDDSLVDVYYREGKEEAEETNVLPKE K K A Y R E 1 1 0 3 0 0 2 1 0 0 2 1 0 0 0 2 0 0 2 2 0 0 17 1 1957.9269 Q14690 Q14690 1489 1505 PDCD11 Protein RRP5 homolog yes yes 3 5.82E-05 52.862 3 2 0.85355 1.1104 22.258 5 Median 0.92893 1.2239 20.376 3 0 Median 0.61733 0.95881 0.6325 2 0 Median 58661000 33502000 25159000 38254000 20867000 17387000 20407000 12635000 7771700 6147 1494 6287 22309;22310;22311;22312;22313 33713;33714;33715;33716;33717;33718 33716 4 KAGNFYVPAEPK RQMYRTEIRMARMARKAGNFYVPAEPKLAF MARKAGNFYVPAEPKLAFVIRIRGINGVSP R K A P K L 2 0 1 0 0 0 1 1 0 0 0 2 0 1 2 0 0 0 1 1 0 0 12 1 1319.6874 A0A024R814;P18124;A8MUD9;C9JIJ5;C9JZ88 A0A024R814 88 99 RPL7 60S ribosomal protein L7 yes no 2;3 7.0684E-32 209.8 7 3 0.7663 0.95518 7.1738 10 Median 0.78095 0.95602 8.2443 7 0 Median 0.59622 0.95434 4.3259 3 0 Median 334190000 183210000 150980000 303920000 165110000 138810000 30264000 18098000 12165000 6148 189 6288 22314;22315;22316;22317;22318;22319;22320;22321;22322;22323 33719;33720;33721;33722;33723;33724;33725;33726;33727;33728;33729;33730;33731;33732;33733;33734;33735;33736 33722 18 KAHLGTALK RSHRRDQKWHDKQYKKAHLGTALKANPFGG HDKQYKKAHLGTALKANPFGGASHAKGIVL K K A L K A 2 0 0 0 0 0 0 1 1 0 2 2 0 0 0 0 1 0 0 0 0 0 9 1 937.5709 A8K517;P62266;D6RD47;D6RDJ2;D6RIX0;D6R9I7 A8K517 29 37 RPS23 40S ribosomal protein S23 yes no 2;3 0.00058542 111.61 5 1 0.97743 1.2131 12.889 6 Median 0.99853 1.235 11.816 5 0 Median 0.69379 0.98439 NaN 1 0 Median 106390000 52498000 53895000 103730000 50874000 52853000 2665400 1623500 1042000 6149 611 6289 22324;22325;22326;22327;22328;22329 33737;33738;33739;33740;33741;33742;33743;33744;33745 33740 9 KALAAAGYDVEK AASKERSGVSLAALKKALAAAGYDVEKNNS ALKKALAAAGYDVEKNNSRIKLGLKSLVSK K K A E K N 4 0 0 1 0 0 1 1 0 0 1 2 0 0 0 0 0 0 1 1 0 0 12 1 1234.6558 B2R984;A3R0T8;P10412;Q4VB24;A3R0T7;P16402;Q02539;A1L407;P16403 P16403 64 75 HIST1H1E;HIST1H1D;HIST1H1A;HIST1H1T;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.1;Histone H1.2 no no 2 0.00043212 112.84 3 0.83617 1.0216 11.672 2 Median 0.83617 1.0216 11.672 2 0 Median NaN NaN NaN 0 0 Median 52960000 28717000 24243000 52960000 28717000 24243000 0 0 0 6150 542;1274 6290 22330;22331;22332 33746;33747;33748;33749;33750 33749 5 KALAAGGYDVEK AASKERNGLSLAALKKALAAGGYDVEKNNS ALKKALAAGGYDVEKNNSRIKLGLKSLVSK K K A E K N 3 0 0 1 0 0 1 2 0 0 1 2 0 0 0 0 0 0 1 1 0 0 12 1 1220.6401 P16401 P16401 67 78 HIST1H1B Histone H1.5 yes yes 2 0.0030889 105.46 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18572000 18572000 0 18572000 18572000 0 0 0 0 6151 1273 6291 22333 33751 33751 1 KANLQIDQINTDLNLER EEEQGNTELINDRLKKANLQIDQINTDLNL NLQIDQINTDLNLERSHAQKNENARQQLER K K A E R S 1 1 3 2 0 2 1 0 0 2 3 1 0 0 0 0 1 0 0 0 0 0 17 1 1997.0542 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1754 1770 MYH9;FLJ00279 Myosin-9 no no 3 0.00044378 79.92 3 1.5366 1.9963 4.7881 3 Plateau 1.5366 1.9963 4.7881 3 0 Plateau NaN NaN NaN 0 0 Median 31750000 15329000 16421000 31750000 15329000 16421000 0 0 0 6152 61;490 6292 22334;22335;22336 33752;33753;33754;33755;33756 33752 5 KAPGCVLSNPDQK RPECREDFVLSITGKKAPGCVLSNPDQKGK GKKAPGCVLSNPDQKGKMRRIDCLRQADKV K K A Q K G 1 0 1 1 1 1 0 1 0 0 1 2 0 0 2 1 0 0 0 1 0 0 13 1 1412.7082 Q6FI30;B7Z4T6;P08651 Q6FI30 91 103 NFIC Nuclear factor 1;Nuclear factor 1 C-type yes no 2 1.8479E-05 142.19 3 0.54447 0.63743 16.202 3 Median 0.54447 0.63743 16.202 3 0 Median NaN NaN NaN 0 0 Median 7558000 4675400 2882600 7558000 4675400 2882600 0 0 0 6153 909 6293 22337;22338;22339 33757;33758;33759;33760;33761;33762 33761 6 KAPLNIPGTPVLEDFPQNDDEK ASSPSERVFPMPLPRKAPLNIPGTPVLEDF GTPVLEDFPQNDDEKERLQRRRSRVFDLQF R K A E K E 1 0 2 3 0 1 2 1 0 1 2 2 0 1 4 0 1 0 0 1 0 0 22 1 2436.2173 Q15003;B4DRG7;E9PHA2;A8K4T8;C9J470;C9JZP1 Q15003 41 62 NCAPH Condensin complex subunit 2 yes no 3 2.4758E-13 115.02 3 2 0.69179 0.84311 63.207 5 Median 0.74519 0.91621 4.7575 3 0 Plateau 0.17546 0.28216 8.8088 2 0 Median 239680000 159710000 79968000 162890000 91850000 71037000 76793000 67862000 8931400 6154 1500 6294 22340;22341;22342;22343;22344 33763;33764;33765;33766;33767;33768;33769;33770;33771;33772;33773 33763 11 KAQEGGGSEVFQELK ELEAARMLCVNAPPKKAQEGGGSEVFQELK KAQEGGGSEVFQELKGICIALGMSKPPANI K K A L K G 1 0 0 0 0 2 3 3 0 0 1 2 0 1 0 1 0 0 0 1 0 0 15 1 1605.7999 E9PH82;I6L9E8;Q8NCA5;Q05CT2;B3KTW4 E9PH82 133 147 FAM98A Protein FAM98A yes no 3 0.038761 15.99 1 0.6785 0.86159 NaN 1 Median 0.6785 0.86159 NaN 1 0 Median NaN NaN NaN 0 0 Median 6358300 3947400 2410900 6358300 3947400 2410900 0 0 0 6155 1028 6295 22345 33774 33774 1 KASGPPVSELITK PVKKKARKSAGAAKRKASGPPVSELITKAV KRKASGPPVSELITKAVAASKERSGVSLAA R K A T K A 1 0 0 0 0 0 1 1 0 1 1 2 0 0 2 2 1 0 0 1 0 0 13 1 1325.7555 B2R984;A3R0T8;P10412;Q4VB24;A3R0T7;P16402;P16403 P16403 34 46 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 2;3 1.9067E-29 184.96 5 0.81726 1.0018 2.1427 5 Median 0.81726 1.0018 2.1427 5 0 Median NaN NaN NaN 0 0 Median 751270000 403500000 347760000 751270000 403500000 347760000 0 0 0 6156 542;1274 6296 22346;22347;22348;22349;22350 33775;33776;33777;33778;33779;33780;33781;33782;33783;33784;33785;33786;33787;33788;33789 33783 15 KASSEGGTAAGAGLDSLHK QRGLTARERFQNLDKKASSEGGTAAGAGLD EGGTAAGAGLDSLHKNSVSQISVLSGGKAK K K A H K N 4 0 0 1 0 0 1 4 1 0 2 2 0 0 0 3 1 0 0 0 0 0 19 1 1755.8751 A4D275;O15143 A4D275 308 326 ARPC1B Actin-related protein 2/3 complex subunit 1B yes no 3 0.00017266 51.166 2 1.0436 1.2928 43.867 2 Median 1.0436 1.2928 43.867 2 0 Median NaN NaN NaN 0 0 Median 10873000 5067900 5805500 10873000 5067900 5805500 0 0 0 6157 552 6297 22351;22352 33790;33791 33791 2 KASSSDSEDSSEEEEEVQGPPAK RKLQANGPVAKKAKKKASSSDSEDSSEEEE DSSEEEEEVQGPPAKKAAVPAKRVGLPPGK K K A A K K 2 0 0 2 0 1 6 1 0 0 0 2 0 0 2 6 0 0 0 1 0 0 23 1 2421.0303 B2RAU8;A0A0A0MRM9;Q14978;S4R3C2 B2RAU8 81 103 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 3 0.04822 8.4103 1 0.25716 0.34887 NaN 1 Median NaN NaN NaN 0 0 Median 0.25716 0.34887 NaN 1 0 Median 1439900 1005800 434160 0 0 0 1439900 1005800 434160 6158 388 6298 22353 33792 33792 1 KATGPPVSELITK KKATKKAAGAGAAKRKATGPPVSELITKAV KRKATGPPVSELITKAVAASKERNGLSLAA R K A T K A 1 0 0 0 0 0 1 1 0 1 1 2 0 0 2 1 2 0 0 1 0 0 13 1 1339.7711 P16401 P16401 37 49 HIST1H1B Histone H1.5 yes yes 2;3 5.4595E-42 229.56 6 4 0.63916 0.78021 105.69 8 Median 0.67694 0.82648 6.8545 5 0 Median 0.065788 0.10587 5.2381 3 0 Median 843390000 612050000 231340000 551070000 339030000 212040000 292320000 273020000 19303000 6159 1273 6299 22354;22355;22356;22357;22358;22359;22360;22361;22362;22363 33793;33794;33795;33796;33797;33798;33799;33800;33801;33802;33803;33804;33805;33806;33807;33808 33794 16 KAVDALLTHCK AAPTARKQLDKEQVRKAVDALLTHCKSRKN EQVRKAVDALLTHCKSRKNNYGLLLNENES R K A C K S 2 0 0 1 1 0 0 0 1 0 2 2 0 0 0 0 1 0 0 1 0 0 11 1 1254.6754 O76021;Q32Q62;J3QSV6;A0PJ61;A0PJ87;I3L3U9;I3L3C4;I3L1A3 O76021 38 48 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 3 0.028659 50.897 2 0.48621 0.60411 NaN 1 Median 0.48621 0.60411 NaN 1 0 Median NaN NaN NaN 0 0 Median 5680200 3695000 1985200 5680200 3695000 1985200 0 0 0 6160 1210 6300 22364;22365 33809;33810 33809 2 KCDISLQFFLPFSLGK RFSKSQLDIIIHSLKKCDISLQFFLPFSLG CDISLQFFLPFSLGKEDGSGDRGDGPFRLG K K C G K E 0 0 0 1 1 1 0 1 0 1 3 2 0 3 1 2 0 0 0 0 0 0 16 1 1898.9964 P13010 P13010 156 171 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2;3 2.9594E-25 126.91 5 0.5695 0.7014 62.512 4 Median 0.5695 0.7014 62.512 4 0 Median NaN NaN NaN 0 0 Median 127540000 83857000 43682000 127540000 83857000 43682000 0 0 0 6161 1262 6301 22366;22367;22368;22369;22370 33811;33812;33813;33814;33815;33816;33817;33818;33819 33817 8 KCDLISIPK VVKKNILDSKPTANKKCDLISIPKKTTDTA KPTANKKCDLISIPKKTTDTASVQNEAKLD K K C P K K 0 0 0 1 1 0 0 0 0 2 1 2 0 0 1 1 0 0 0 0 0 0 9 1 1072.5951 B4DMH3;Q53G58;B3KN06;A0A024RBI5;Q59EA2;Q9ULV4;B7Z9V0;B4E3S0;H0YHL7 B4DMH3 382 390 CORO1C Coronin;Coronin-1C yes no 2 2.8035E-05 137.05 3 1.3752 1.6967 3.1791 3 Median 1.3752 1.6967 3.1791 3 0 Median NaN NaN NaN 0 0 Median 87486000 38581000 48905000 87486000 38581000 48905000 0 0 0 6162 274 6302 22371;22372;22373 33820;33821;33822;33823 33822 4 KCPFTGNVSIR FKTPKEAIEGTYIDKKCPFTGNVSIRGRIL YIDKKCPFTGNVSIRGRILSGVVTKMKMQR K K C I R G 0 1 1 0 1 0 0 1 0 1 0 1 0 1 1 1 1 0 0 1 0 0 11 1 1277.655 P62280;M0QZC5 P62280 59 69 RPS11 40S ribosomal protein S11 yes no 2;3 1.2596E-12 121.5 7 0.83043 1.0992 13.912 6 Median 0.83043 1.0992 13.912 6 0 Median NaN NaN NaN 0 0 Median 668110000 379990000 288120000 668110000 379990000 288120000 0 0 0 6163 1404 6303 22374;22375;22376;22377;22378;22379;22380 33824;33825;33826;33827;33828;33829;33830;33831;33832;33833 33832 10 KDAGAGTEAESLK QPGGKEDAPAAEGKKKDAGAGTEAESLKGN KKKDAGAGTEAESLKGNAEAQPLGPEAKGQ K K D L K G 3 0 0 1 0 0 2 2 0 0 1 2 0 0 0 1 1 0 0 0 0 0 13 1 1275.6307 Q6P6B1 Q6P6B1 132 144 ERICH5 Glutamate-rich protein 5 yes yes 2 0.0015437 56.043 1 0.92535 1.1489 NaN 1 Median 0.92535 1.1489 NaN 1 0 Median NaN NaN NaN 0 0 Median 23544000 11979000 11565000 23544000 11979000 11565000 0 0 0 6164 1593 6304 22381 33834 33834 1 KDDEENYLDLFSHK LLTAEIEKIQKGDSKKDDEENYLDLFSHKN KKDDEENYLDLFSHKNMKLKERVLIPVKQY K K D H K N 0 0 1 3 0 0 2 0 1 0 2 2 0 1 0 1 0 0 1 0 0 0 14 1 1751.8002 B4DDX2;B2R7B5;Q07666;B4E043 B4DDX2 119 132 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 3 4.9024E-07 97.223 4 0.73706 0.90583 36.826 4 Median 0.73706 0.90583 36.826 4 0 Median NaN NaN NaN 0 0 Median 144640000 73509000 71132000 144640000 73509000 71132000 0 0 0 6165 704 6305 22382;22383;22384;22385 33835;33836;33837;33838;33839;33840;33841 33840 7 KDDEVQVVR KELRQKYNVRSMPIRKDDEVQVVRGHYKGQ RSMPIRKDDEVQVVRGHYKGQQIGKVVQVY R K D V R G 0 1 0 2 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 3 0 0 9 1 1086.5669 Q9UNX3;E5RIT6;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;Q6IBH6;P61254;J3KTJ8;A0A024RBF6 Q9UNX3 51 59 RPL26L1;RPL26;hCG_26523 60S ribosomal protein L26-like 1;60S ribosomal protein L26 no no 2;3 1.0118E-193 321.72 5 3 0.7543 0.99816 19.765 7 Median 0.76681 1.007 3.9716 5 0 Median 0.38798 0.67055 7.1238 2 0 Median 911270000 536240000 375030000 777230000 439450000 337780000 134040000 96790000 37252000 6166 1797;1142 6306 22386;22387;22388;22389;22390;22391;22392;22393 33842;33843;33844;33845;33846;33847;33848;33849;33850;33851;33852;33853;33854 33847 12 KDDFLGAAEGK QFFKISPDLNIKCERKDDFLGAAEGKLQCN KCERKDDFLGAAEGKLQCNRLMPNSQKDCH R K D G K L 2 0 0 2 0 0 1 2 0 0 1 2 0 1 0 0 0 0 0 0 0 0 11 1 1149.5666 E9PEI0;Q69YH5;A8K8Z0;B3KRS8 E9PEI0 751 761 CDCA2 Cell division cycle-associated protein 2 yes no 2 6.4362E-09 156.01 3 2 0.85779 1.0569 28.915 5 Median 0.86008 1.0715 5.2496 3 0 Median 0.41153 0.64972 0.96934 2 0 Median 48993000 28878000 20115000 27352000 13943000 13409000 21641000 14935000 6706400 6167 1023 6307 22394;22395;22396;22397;22398 33855;33856;33857;33858;33859;33860;33861;33862 33856 8 KDDINLLPSK DFHKRTPNRYHLRSKKDDINLLPSKSSVTK HLRSKKDDINLLPSKSSVTKICRDPQTPVL K K D S K S 0 0 1 2 0 0 0 0 0 1 2 2 0 0 1 1 0 0 0 0 0 0 10 1 1141.6343 Q643R0;Q9ULW0;B3KM90 Q643R0 348 357 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 0.00096561 118.23 1 2 0.6926 1.1208 24.813 3 Plateau 0.56925 0.70465 NaN 1 0 Median 0.67805 1.077 5.6407 2 0 Median 33110000 21060000 12050000 6777900 5383700 1394100 26332000 15677000 10655000 6168 1581 6308 22399;22400;22401 33863;33864;33865;33866 33863 4 KDEDIPLFPVQTK PEDVINFKKIYKTLKKDEDIPLFPVQTKYM LKKDEDIPLFPVQTKYMDVVKERIRLARQI K K D T K Y 0 0 0 2 0 1 1 0 0 1 1 2 0 1 2 0 1 0 0 1 0 0 13 1 1528.8137 B4DKV2;G3V529;Q9GZR7;F5GYL3;B4E300;B4DM03;A0A087WXU8;Q7Z4X3;Q7Z4W0;B4DGI6 B4DKV2 615 627 DDX24 ATP-dependent RNA helicase DDX24 yes no 3 0.0072872 24.191 1 0.46162 0.5421 NaN 1 Median 0.46162 0.5421 NaN 1 0 Median NaN NaN NaN 0 0 Median 3559500 2358500 1201000 3559500 2358500 1201000 0 0 0 6169 822 6309 22402 33867 33867 1 KDEDLFR FDKAYVVLGQFLVLKKDEDLFREWLKDTCG LGQFLVLKKDEDLFREWLKDTCGANAKQSR K K D F R E 0 1 0 2 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 7 1 921.4556 A0A024R5H0;O75531;B2R4V4 A0A024R5H0 54 60 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 2 9.2197E-40 215.79 4 2 0.91707 1.2042 8.5004 5 Median 0.94455 1.2531 3.1365 3 0 Median 0.60823 1.0741 2.3712 2 0 Median 2181900000 1185600000 996310000 1592100000 823840000 768230000 589850000 361770000 228080000 6170 143 6310 22403;22404;22405;22406;22407;22408 33868;33869;33870;33871;33872;33873;33874;33875;33876;33877;33878;33879;33880 33879 13 KDEIENSIVHR ELIRRRRTRIGYSFKKDEIENSIVHRVQGV YSFKKDEIENSIVHRVQGVFQRASAKWKDD K K D H R V 0 1 1 1 0 0 2 0 1 2 0 1 0 0 0 1 0 0 0 1 0 0 11 1 1338.6892 B3KQ21;Q9NYH9;B4DSL9;B7Z9G4 B3KQ21 81 91 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2;3 3.6719E-05 124.21 4 0.97914 1.2783 9.6681 4 Median 0.97914 1.2783 9.6681 4 0 Median NaN NaN NaN 0 0 Median 115990000 56126000 59868000 115990000 56126000 59868000 0 0 0 6171 768 6311 22409;22410;22411;22412 33881;33882;33883;33884;33885;33886 33885 6 KDENESSAPADGEGGSELQPK QALPASPALKNKRPRKDENESSAPADGEGG SAPADGEGGSELQPKNKRMTISRLVLEEDS R K D P K N 2 0 1 2 0 1 4 3 0 0 1 2 0 0 2 3 0 0 0 0 0 0 21 1 2143.9505 Q15554;H3BR06;U3KQ35;J3KSZ6 Q15554 375 395 TERF2 Telomeric repeat-binding factor 2 yes no 3 2.6389E-05 83.436 6 2 0.63193 0.86267 12.583 4 Median 0.71677 0.88749 19.044 2 0 Median 0.58847 0.86267 10.212 2 0 Median 22135000 15026000 7108900 14755000 10153000 4601700 7380200 4873000 2507200 6172 1513 6312 22413;22414;22415;22416;22417;22418;22419;22420 33887;33888;33889;33890;33891;33892;33893;33894;33895;33896 33894 10 KDGNASGTTLLEALDCILPPTRPTDK PSANMPWFKGWKVTRKDGNASGTTLLEALD EALDCILPPTRPTDKPLRLPLQDVYKIGGI R K D D K P 2 1 1 3 1 0 1 2 0 1 4 2 0 0 3 1 4 0 0 0 0 0 26 2 2782.4171 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;P68104;A8K9C4;Q5VTE0;Q96RE1;A0A087WVQ9;Q53GE9;Q53GA1;Q53G85;B4DV42;Q8IUB0;Q504Z0;Q53HR1;B4DNE0;A0A087WV01;Q9H2I7;Q53G89;Q6P4C9;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q16577 Q6IPT9 219 244 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1 Elongation factor 1-alpha;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 3;4 7.5178E-42 165.65 7 4 0.38184 0.45911 138.61 11 Median 0.37212 0.45084 6.2016 7 0 Median 3.2977 5.89 38.638 4 0 Median 905330000 558000000 347330000 696990000 518950000 178050000 208340000 39051000 169290000 6173 1421 6313 22421;22422;22423;22424;22425;22426;22427;22428;22429;22430;22431 33897;33898;33899;33900;33901;33902;33903;33904;33905;33906;33907;33908;33909;33910;33911;33912;33913;33914;33915;33916 33906 19 KDIENQYETQITQIEHEVSSSGQEVQSSAK NDMRQEYEQLIAKNRKDIENQYETQITQIE HEVSSSGQEVQSSAKEVTQLRHGVQELEIE R K D A K E 1 0 1 1 0 5 5 1 1 3 0 2 0 0 0 5 2 0 1 2 0 0 30 1 3391.6016 CON__P35527;P35527;K7EQQ3 CON__P35527 339 368 KRT9 Keratin, type I cytoskeletal 9 yes no 4 0.035981 38.012 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1152800 1152800 0 1152800 1152800 0 0 0 0 + 6174 963 6314 22432 33917 33917 1 KDPGVPNSAPFK KLRKEAKKRGHKKPRKDPGVPNSAPFKEAL KPRKDPGVPNSAPFKEALLREAELRKQRLE R K D F K E 1 0 1 1 0 0 0 1 0 0 0 2 0 1 3 1 0 0 0 1 0 0 12 1 1255.6561 A0A024R2Z6;Q9BVP2;C9JZT7;B4DMU5;C9JYH9 A0A024R2Z6 34 45 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2;3 0.00045642 111.27 6 2 0.58942 0.75287 19.597 8 Median 0.67237 0.82608 22.319 6 0 Median 0.46947 0.73663 3.5076 2 0 Median 98451000 60449000 38002000 81601000 49068000 32533000 16850000 11381000 5469300 6175 95 6315 22433;22434;22435;22436;22437;22438;22439;22440 33918;33919;33920;33921;33922;33923;33924;33925;33926;33927;33928;33929 33923 12 KDPQGLGLHFYK FYEGVVELSLTAAEKKDPQGLGLHFYKHGE AEKKDPQGLGLHFYKHGEPEEDIVGLQAFQ K K D Y K H 0 0 0 1 0 1 0 2 1 0 2 2 0 1 1 0 0 0 1 0 0 0 12 1 1401.7405 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 902 913 NUP155 Nuclear pore complex protein Nup155 yes no 3 0.0017763 55.105 2 0.35853 0.44568 10.614 2 Median 0.35853 0.44568 10.614 2 0 Median NaN NaN NaN 0 0 Median 19426000 13017000 6408900 19426000 13017000 6408900 0 0 0 6176 29 6316 22441;22442 33930;33931 33931 2 KDTFLGPVLK RVLAFLVLSRVCRHKKDTFLGPVLKQMYIT VCRHKKDTFLGPVLKQMYITYVRNCKFTSP K K D L K Q 0 0 0 1 0 0 0 1 0 0 2 2 0 1 1 0 1 0 0 1 0 0 10 1 1116.6543 Q9Y3T9;B3KNC3;Q9H9J5;B4DY21 Q9Y3T9 325 334 NOC2L Nucleolar complex protein 2 homolog yes no 2 0.02179 94.692 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1188400 1188400 0 1188400 1188400 0 0 0 0 6177 1820 6317 22443 33932 33932 1 KEAQELSQNSAIK YSGHQGRTIIFCETKKEAQELSQNSAIKQD TKKEAQELSQNSAIKQDAQSLHGDIPQKQR K K E I K Q 2 0 1 0 0 2 2 0 0 1 1 2 0 0 0 2 0 0 0 0 0 0 13 1 1444.7522 Q9NR30 Q9NR30 449 461 DDX21 Nucleolar RNA helicase 2 yes yes 2 7.7823E-11 153.74 2 2 0.53054 0.68454 15.882 2 Median 0.63486 0.7659 NaN 1 0 Median 0.44337 0.61182 NaN 1 0 Median 6501500 5160100 1341400 2379200 1734500 644650 4122300 3425500 696780 6178 1756 6318 22444;22445;22446;22447 33933;33934;33935;33936 33934 4 KEDALLYQSK LNSTRGDADMYDLPKKEDALLYQSKGYNDD YDLPKKEDALLYQSKGYNDDYYEESYFTTR K K E S K G 1 0 0 1 0 1 1 0 0 0 2 2 0 0 0 1 0 0 1 0 0 0 10 1 1193.6292 P50402;Q5HY57 P50402 79 88 EMD Emerin yes no 2 7.3593E-25 208.15 3 2 0.46774 0.57538 44.679 5 Median 0.46012 0.57172 9.0113 3 0 Median 0.75309 1.2071 14.734 2 0 Median 93002000 53811000 39191000 43068000 25821000 17247000 49934000 27990000 21944000 6179 1357 6319 22448;22449;22450;22451;22452 33937;33938;33939;33940;33941;33942 33938 6 KEDGFEDGVEDNK AKHDGEDVLGNKVERKEDGFEDGVEDNKLK ERKEDGFEDGVEDNKLKENMERACLMSLDI R K E N K L 0 0 1 3 0 0 3 2 0 0 0 2 0 1 0 0 0 0 0 1 0 0 13 1 1480.6318 Q14191 Q14191 370 382 WRN Werner syndrome ATP-dependent helicase yes yes 2 0.0001856 130.44 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1530000 913840 616210 1530000 913840 616210 0 0 0 6180 1482 6320 22453;22454;22455 33943;33944;33945 33944 3 KEDINLSVR TVHVEVHQRGSSTAKKEDINLSVRKLLNRH GSSTAKKEDINLSVRKLLNRHNIVFGDYTW K K E V R K 0 1 1 1 0 0 1 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 9 1 1072.5877 Q15645;H0YAL2 Q15645 35 43 TRIP13 Pachytene checkpoint protein 2 homolog yes no 2 0.014754 88.37 3 0.30313 0.40338 4.8297 3 Median 0.30313 0.40338 4.8297 3 0 Median NaN NaN NaN 0 0 Median 42759000 32564000 10195000 42759000 32564000 10195000 0 0 0 6181 1514 6321 22456;22457;22458 33946;33947;33948 33947 3 KEDLEFQAK ETLRPYQSPFMDREKKEDLEFQAKHMDQPL FMDREKKEDLEFQAKHMDQPLPTAIGLYKN K K E A K H 1 0 0 1 0 1 2 0 0 0 1 2 0 1 0 0 0 0 0 0 0 0 9 1 1106.5608 A0A024R2M8;X5DRB1;A8K146;Q01831;D9I4E1;D2CPJ1;D2CPJ3;D2CPI8 A0A024R2M8 620 628 XPC DNA repair protein complementing XP-C cells no no 2 3.0779E-05 160.82 2 2 0.7018 0.98858 10.475 4 Median 0.86 1.0595 13.661 2 0 Median 0.59935 0.96443 7.3566 2 0 Median 128560000 73953000 54606000 43988000 23396000 20592000 84571000 50557000 34014000 6182 89;976 6322 22459;22460;22461;22462 33949;33950;33951;33952 33949 3 KEDLYLK GLKVRIMGPNYTPGKKEDLYLKPIQRTILM GPNYTPGKKEDLYLKPIQRTILMMGRYVEP K K E L K P 0 0 0 1 0 0 1 0 0 0 2 2 0 0 0 0 0 0 1 0 0 0 7 1 907.50148 P13639;Q8TA90;Q6PK56;B4DRE8 P13639 439 445 EEF2 Elongation factor 2 yes no 2 0.0373 62.546 1 7.7647 12.11 NaN 1 Median NaN NaN NaN 0 0 Median 7.7647 12.11 NaN 1 0 Median 7304400 829550 6474900 0 0 0 7304400 829550 6474900 6183 1264 6323 22463 33953 33953 1 KEEELQAALAR ELQAQIAELKMQLAKKEEELQAALARVEEE QLAKKEEELQAALARVEEEAAQKNMALKKI K K E A R V 3 1 0 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1256.6725 A0A024R1N1;P35579;Q86XU5;Q99529;Q7Z7R0;A0A0C4DFM8;A0A0U4BW16;Q7Z406 A0A024R1N1 1081 1091 MYH9;MYH14 Myosin-9;Myosin-14 no no 2;3 1.2614E-56 252.16 5 2 1.0329 1.3672 87.81 7 Median 0.92933 1.2207 6.897 5 0 Median 4.4824 7.6967 3.6104 2 0 Median 225640000 91955000 133690000 147850000 77439000 70416000 77787000 14516000 63271000 6184 61;490;1615 6324 22464;22465;22466;22467;22468;22469;22470 33954;33955;33956;33957;33958;33959;33960;33961;33962;33963 33957 10 KEEELQAALARVEEEAAQK ELQAQIAELKMQLAKKEEELQAALARVEEE LQAALARVEEEAAQKNMALKKIRELESQIS K K E Q K N 5 1 0 0 0 2 6 0 0 0 2 2 0 0 0 0 0 0 0 1 0 0 19 2 2141.0964 A0A024R1N1;P35579;Q86XU5;Q99529;A0A0U4BW16 A0A024R1N1 1081 1099 MYH9 Myosin-9 no no 3 3.7268E-06 91.401 3 0.94158 1.1883 6.7846 3 Median 0.94158 1.1883 6.7846 3 0 Median NaN NaN NaN 0 0 Median 45724000 23099000 22625000 45724000 23099000 22625000 0 0 0 6185 61;490 6325 22471;22472;22473 33964;33965;33966;33967 33967 4 KEEENASVIDSAELQAYPALVVEK DAYMTLADFCDQQLRKEEENASVIDSAELQ DSAELQAYPALVVEKMLKALKLNSNEARLK R K E E K M 4 0 1 1 0 1 5 0 0 1 2 2 0 0 1 2 0 0 1 3 0 0 24 1 2631.3279 P78527 P78527 3426 3449 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.00020731 70.679 2 0.42864 0.53789 NaN 1 Median 0.42864 0.53789 NaN 1 0 Median NaN NaN NaN 0 0 Median 10252000 7029100 3222900 10252000 7029100 3222900 0 0 0 6186 1427 6326 22474;22475 33968;33969;33970 33968 3 KEELTLEGIR VTKKFMRDPIRILVKKEELTLEGIRQFYIN RILVKKEELTLEGIRQFYINVEREEWKLDT K K E I R Q 0 1 0 0 0 0 3 1 0 1 2 1 0 0 0 0 1 0 0 0 0 0 10 1 1186.6558 A8K7F6;P60842;A8K088;J3KT12;J3KTB5;Q59F68;J3QS69;B4DNH2;J3KSZ0;J3KTN0;B4DKP9 A8K7F6 238 247 EIF4A1 Eukaryotic initiation factor 4A-I yes no 2;3 0.00025922 131.52 4 2 0.50179 0.65515 130.85 5 Median 0.33104 0.45544 30.127 3 0 Median 3.0774 5.0127 9.8169 2 0 Median 175290000 110020000 65267000 141410000 101850000 39561000 33880000 8173900 25706000 6187 634 6327 22476;22477;22478;22479;22480;22481 33971;33972;33973;33974;33975;33976;33977;33978 33974 7 KEELYLQR HEMKPNLGAIAEYKKKEELYLQRVAELDKI AIAEYKKKEELYLQRVAELDKITYERDSFR K K E Q R V 0 1 0 0 0 1 2 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 8 1 1077.5819 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1099 1106 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.016893 75.696 2 0.61823 0.97133 14 2 Median NaN NaN NaN 0 0 Median 0.61823 0.97133 14 2 0 Median 24120000 14592000 9527700 0 0 0 24120000 14592000 9527700 6188 1760 6328 22482;22483 33979;33980 33980 2 KEEPEPETEAVSSSQEIPTMPQPIEK PRAKKGRRNQSVEPKKEEPEPETEAVSSSQ SSSQEIPTMPQPIEKVSVSTQTKKLSASSP K K E E K V 1 0 0 0 0 2 7 0 0 2 0 2 1 0 5 3 2 0 0 1 0 0 26 1 2909.3852 Q5BJG6;B7Z3W2;J3QKD2;Q15326;A0A0A0MRY2;B0QZE2;B7Z2J6;E7ENI9;Q5UGI2;B7Z3Z1 Q5BJG6 314 339 ZMYND11 Zinc finger MYND domain-containing protein 11 yes no 3 9.873E-08 55.662 2 0.72026 1.1588 0.69352 2 Median NaN NaN NaN 0 0 Median 0.72026 1.1588 0.69352 2 0 Median 82351000 46193000 36158000 0 0 0 82351000 46193000 36158000 6189 906 6329 22484;22485 33981;33982;33983 33981 310 3 KEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGK ______________________________ SFNDTFVHVTDLSGKETICRVTGGMKVKAD K K E G K E 2 0 2 2 1 2 4 4 2 2 2 2 0 4 1 3 2 0 0 6 0 0 41 1 4504.2009 P62263;E5RH77 P62263 10 50 RPS14 40S ribosomal protein S14 yes no 4 7.9753E-05 43.216 1 0.56862 0.68401 NaN 1 Median 0.56862 0.68401 NaN 1 0 Median NaN NaN NaN 0 0 Median 2939500 1940900 998600 2939500 1940900 998600 0 0 0 6190 1401 6330 22486 33984 33984 1 KEETQPPVALK DRKNPLPPSVGVVDKKEETQPPVALKKEGI VVDKKEETQPPVALKKEGIRRIGRRPDQQL K K E L K K 1 0 0 0 0 1 2 0 0 0 1 2 0 0 2 0 1 0 0 1 0 0 11 1 1238.6871 Q63HR1;Q5VU21;D3DQ69;Q8NC51;D3DQ70 Q63HR1 92 102 DKFZp686P17171;SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 2 6.0128E-23 178.84 3 0.65846 0.81161 10.434 2 Median 0.65846 0.81161 10.434 2 0 Median NaN NaN NaN 0 0 Median 19098000 12274000 6823700 19098000 12274000 6823700 0 0 0 6191 1578 6331 22487;22488;22489 33985;33986;33987;33988;33989 33987 5 KEETQPPVALKK DRKNPLPPSVGVVDKKEETQPPVALKKEGI VDKKEETQPPVALKKEGIRRIGRRPDQQLQ K K E K K E 1 0 0 0 0 1 2 0 0 0 1 3 0 0 2 0 1 0 0 1 0 0 12 2 1366.782 Q63HR1;Q5VU21;D3DQ69;Q8NC51;D3DQ70 Q63HR1 92 103 DKFZp686P17171;SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 3 0.003058 51.286 1 0.7037 0.82731 NaN 1 Median 0.7037 0.82731 NaN 1 0 Median NaN NaN NaN 0 0 Median 8828800 4387500 4441400 8828800 4387500 4441400 0 0 0 6192 1578 6332 22490 33990 33990 1 KEGDLIAAQAR KVREEFKELKARNTKKEGDLIAAQARLKDL RNTKKEGDLIAAQARLKDLEALLNSKEAAL K K E A R L 3 1 0 1 0 1 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 11 1 1170.6357 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;Q5TCI8;H0YAB0 P02545 123 133 LMNA Prelamin-A/C;Lamin-A/C yes no 2;3 0.0012227 86.344 5 0.69403 0.93496 16.616 4 Median 0.69403 0.93496 16.616 4 0 Median NaN NaN NaN 0 0 Median 25644000 17999000 7644600 25644000 17999000 7644600 0 0 0 6193 1229 6333 22491;22492;22493;22494;22495 33991;33992;33993;33994;33995;33996 33991 6 KEGGLGPLNIPLLADVTR VDSQFTHLAWINTPRKEGGLGPLNIPLLAD GLGPLNIPLLADVTRRLSEDYGVLKTDEGI R K E T R R 1 1 1 1 0 0 1 3 0 1 4 1 0 0 2 0 1 0 0 1 0 0 18 1 1862.0625 B4DF70;V9HW12;P32119;A6NIW5 B4DF70 92 109 HEL-S-2a;PRDX2 Peroxiredoxin-2 yes no 3 0.00041344 50.117 4 0.40371 0.53254 NaN 1 Median 0.40371 0.53254 NaN 1 0 Median NaN NaN NaN 0 0 Median 5737900 5154400 583510 5737900 5154400 583510 0 0 0 6194 801 6334 22496;22497;22498;22499 33997;33998;33999;34000 33999 4 KEIDVISIPSK VCVRKRPLNKQELAKKEIDVISIPSKCLLL ELAKKEIDVISIPSKCLLLVHEPKLKVDLT K K E S K C 0 0 0 1 0 0 1 0 0 3 0 2 0 0 1 2 0 0 0 1 0 0 11 1 1227.7075 A8K3S3;A0A140VKF1;Q99661;B7Z7M6;B7Z6Q6;Q8N5N1;Q5JR91;Q5JR89 A8K3S3 276 286 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 2 3.7322E-06 109.72 3 0.72784 0.90477 7.7685 3 Median 0.72784 0.90477 7.7685 3 0 Median NaN NaN NaN 0 0 Median 23895000 13523000 10373000 23895000 13523000 10373000 0 0 0 6195 514 6335 22500;22501;22502 34001;34002;34003;34004;34005 34005 4 KELELSQMNSK NLESSQRHLAEELRKKELELSQMNSKVENE ELRKKELELSQMNSKVENEKGLVAQLQKTV K K E S K V 0 0 1 0 0 1 2 0 0 0 2 2 1 0 0 2 0 0 0 0 0 0 11 1 1305.6599 B3KP05;Q9Y2K3 B3KP05 124 134 MYH15 Myosin-15 yes no 2 0.020438 67.897 1 0.5958 0.71575 NaN 1 Median 0.5958 0.71575 NaN 1 0 Median NaN NaN NaN 0 0 Median 299110000 184180000 114930000 299110000 184180000 114930000 0 0 0 6196 762 6336 22503 34006 34006 279 0 KEPLYVGVDDDK TQTRKVEDLARISLKKEPLYVGVDDDKANA SLKKEPLYVGVDDDKANATVDGLEQGYVVC K K E D K A 0 0 0 3 0 0 1 1 0 0 1 2 0 0 1 0 0 0 1 2 0 0 12 1 1376.6824 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254;Q59FR7;H7C452 Q4ZG72 257 268 DDX18 ATP-dependent RNA helicase DDX18 yes no 2;3 7.5563E-10 116.24 5 1 1.0447 1.2748 11.619 5 Median 1.0447 1.2748 11.619 5 0 Median NaN NaN NaN 0 0 Median 127090000 66397000 60691000 118300000 57606000 60691000 8791500 8791500 0 6197 242 6337 22504;22505;22506;22507;22508;22509 34007;34008;34009;34010;34011;34012;34013;34014;34015 34012 9 KEPVDEDLYPEHYR FTFNIKLSSPVKRPRKEPVDEDLYPEHYRK RKEPVDEDLYPEHYRKYSDYIKGSNLDAPE R K E Y R K 0 1 0 2 0 0 3 0 1 0 1 1 0 0 2 0 0 0 2 1 0 0 14 1 1788.8319 A0A024R7E3;P26358;Q59FP7;I6L9H2 A0A024R7E3 1023 1036 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 no no 3 0.013453 54.393 2 0.29946 0.39319 28.398 2 Median 0.29946 0.39319 28.398 2 0 Median NaN NaN NaN 0 0 Median 10026000 6693400 3332800 10026000 6693400 3332800 0 0 0 6198 176;1129 6338 22510;22511 34016;34017 34016 2 KEQLAWPMMRKNK K E N K 1 1 1 0 0 1 1 0 0 0 1 3 2 0 1 0 0 1 0 0 0 0 13 3 1658.8749 REV__A0A1B0GVZ6 yes no 3 0.023577 50.149 1 0.60984 0.73078 NaN 1 Median 0.60984 0.73078 NaN 1 0 Median NaN NaN NaN 0 0 Median 18929000 11171000 7757600 18929000 11171000 7757600 0 0 0 + 6199 1844 6339 22512 34018 34018 862;863 0 KESPELLELIEDLK DLAKVSVKEKLKMLRKESPELLELIEDLKV RKESPELLELIEDLKVKLTEVKDELEPLLE R K E L K V 0 0 0 1 0 0 4 0 0 1 4 2 0 0 1 1 0 0 0 0 0 0 14 1 1654.9029 Q9NQZ2 Q9NQZ2 221 234 UTP3 Something about silencing protein 10 yes yes 3 8.8901E-05 96.673 3 2 0.86143 1.0422 41.627 3 Median 1.1836 1.4306 44.797 2 0 Median 0.63508 0.89609 NaN 1 0 Median 9544800 5055400 4489400 6893300 3371500 3521800 2651500 1683900 967660 6200 1755 6340 22513;22514;22515;22516;22517 34019;34020;34021;34022;34023;34024;34025;34026;34027 34023 9 KESYSIYVYK TKAQKKDGKKRKRSRKESYSIYVYKVLKQV RKRSRKESYSIYVYKVLKQVHPDTGISSKA R K E Y K V 0 0 0 0 0 0 1 0 0 1 0 2 0 0 0 2 0 0 3 1 0 0 10 1 1278.6496 A0A024RCJ2;Q16778;P33778;P23527;P06899;Q8N257 A0A024RCJ2 35 44 HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB Histone H2B;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B no no 2;3 1.9571E-28 185.61 11 2 0.81653 0.99233 32.133 11 Median 0.81964 0.99577 22.905 9 0 Median 0.30719 0.50239 1.8179 2 0 Median 8989400000 5449900000 3539500000 7751800000 4518800000 3233000000 1237600000 931140000 306450000 6201 295 6341 22518;22519;22520;22521;22522;22523;22524;22525;22526;22527;22528;22529;22530 34028;34029;34030;34031;34032;34033;34034;34035;34036;34037;34038;34039;34040;34041;34042;34043;34044;34045;34046;34047;34048;34049;34050;34051;34052;34053;34054;34055;34056;34057;34058;34059;34060 34047 33 KESYSVYVYK TKAQKKDGKKRKRSRKESYSVYVYKVLKQV RKRSRKESYSVYVYKVLKQVHPDTGISSKA R K E Y K V 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 2 0 0 3 2 0 0 10 1 1264.634 B2R4S9;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;B4DR52;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;O60814;Q0D2M2;A8K9J7;P57053 B2R4S9 35 44 HIST1H2BI;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;H2BFS Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type F-S yes no 2;3 5.2618E-37 207.68 29 2 0.70367 0.85849 44.542 18 Median 0.71175 0.86364 35.693 16 0 Median 0.22403 0.3676 1.3058 2 0 Median 13769000000 8552400000 5216900000 11617000000 6831300000 4785400000 2152600000 1721100000 431530000 6202 25 6342 22531;22532;22533;22534;22535;22536;22537;22538;22539;22540;22541;22542;22543;22544;22545;22546;22547;22548;22549;22550;22551;22552;22553;22554;22555;22556;22557;22558;22559;22560;22561 34061;34062;34063;34064;34065;34066;34067;34068;34069;34070;34071;34072;34073;34074;34075;34076;34077;34078;34079;34080;34081;34082;34083;34084;34085;34086;34087;34088;34089;34090;34091;34092;34093;34094;34095;34096;34097;34098;34099;34100;34101;34102;34103;34104;34105;34106;34107;34108;34109;34110;34111;34112;34113;34114;34115;34116;34117;34118;34119;34120;34121;34122 34103 61 KETESEAEDNLDDLEK TTLAQEEPVAAPEPKKETESEAEDNLDDLE ETESEAEDNLDDLEKHLREKALRSMRKAQV K K E E K H 1 0 1 3 0 0 5 0 0 0 2 2 0 0 0 1 1 0 0 0 0 0 16 1 1863.8222 A0A0S2Z4W1;A9Z1X7;B7Z7U0;A0A0S2Z4Z6;Q8IYB3 A0A0S2Z4W1 870 885 SRRM1 Serine/arginine repetitive matrix protein 1 yes no 3 0.00094433 74.726 3 0.26021 0.31899 45.62 2 Median 0.26021 0.31899 45.62 2 0 Median NaN NaN NaN 0 0 Median 11776000 10125000 1651200 11776000 10125000 1651200 0 0 0 6203 471 6343 22562;22563;22564 34123;34124;34125;34126 34124 4 KFAYLGR VVPAALKVVRLKPTRKFAYLGRLAHEVGWK VVRLKPTRKFAYLGRLAHEVGWKYQAVTAT R K F G R L 1 1 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 0 1 0 0 0 7 1 853.48102 Q53H34;P40429;Q5QTS3;M0QYS1;Q8J015;Q0VGL3;Q9BSQ6 Q53H34 134 140 RPL13A;RPL13a 60S ribosomal protein L13a no no 2 0.020467 109.7 1 0.63428 0.84385 NaN 1 Median 0.63428 0.84385 NaN 1 0 Median NaN NaN NaN 0 0 Median 17853000 11311000 6541600 17853000 11311000 6541600 0 0 0 6204 1332;1712 6344 22565 34127 34127 1 KFDDELVESSLAK TIPKRRSSSRFIKRKKFDDELVESSLAKSS RKKFDDELVESSLAKSSTRAKGASGVEPGR K K F A K S 1 0 0 2 0 0 2 0 0 0 2 2 0 1 0 2 0 0 0 1 0 0 13 1 1479.7457 F8W126;Q96EZ8;F8W0I9;F8VVA6;F8VP44 F8W126 43 55 MCRS1 Microspherule protein 1 yes no 2 0.0079433 98.902 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6205 1067 6345 22566 34128 34128 1 KFDDFQK EEVGADLEQVEVLQKKFDDFQKDLKANESR EQVEVLQKKFDDFQKDLKANESRLKDINKV K K F Q K D 0 0 0 2 0 1 0 0 0 0 0 2 0 2 0 0 0 0 0 0 0 0 7 1 926.44978 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8;Q9UG16 Q13813 1132 1138 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.0038601 130.22 3 0.85082 1.0491 0.11966 2 Median 0.85082 1.0491 0.11966 2 0 Median NaN NaN NaN 0 0 Median 61227000 22071000 39156000 61227000 22071000 39156000 0 0 0 6206 1476 6346 22567;22568;22569 34129;34130;34131 34131 3 KFDQLLAEEK DHQRQSACNLEKKQKKFDQLLAEEKTISAK EKKQKKFDQLLAEEKTISAKYAEERDRAEA K K F E K T 1 0 0 1 0 1 2 0 0 0 2 2 0 1 0 0 0 0 0 0 0 0 10 1 1219.6449 A0A024R1N1;P35579;Q7Z7R0;O14729;O14794;Q68D89;A0A0C4DFM8;B4E177;A1L2Z2;A0A0U4BW16;P35580;Q7Z406 A0A024R1N1 1445 1454 MYH9;DKFZp686D10126;MYH14;MYH10 Myosin-9;Myosin-10;Myosin-14 no no 2 1.465E-21 184.71 4 2 1.0009 1.224 70.869 5 Median 0.97237 1.1923 3.7099 4 0 Median 3.6604 5.794 NaN 1 0 Median 371830000 175730000 196100000 340370000 171690000 168680000 31457000 4038900 27418000 6207 61;490;1320;1615 6347 22570;22571;22572;22573;22574;22575 34132;34133;34134;34135;34136;34137;34138;34139;34140;34141;34142;34143;34144 34142 13 KFDVNTSAVQVLIEHIGNLDR AISNELFEEAFAIFRKFDVNTSAVQVLIEH SAVQVLIEHIGNLDRAYEFAERCNEPAVWS R K F D R A 1 1 2 2 0 1 1 1 1 2 2 1 0 1 0 1 1 0 0 3 0 0 21 1 2367.2547 A0A087WVQ6;Q00610 A0A087WVQ6 1078 1098 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 3 0.00036324 36.856 1 0.37899 0.4867 NaN 1 Median 0.37899 0.4867 NaN 1 0 Median NaN NaN NaN 0 0 Median 4109000 2622900 1486100 4109000 2622900 1486100 0 0 0 6208 350 6348 22576 34145 34145 1 KFEIEPQSSAHEPGGSLSER PEMKQINLTDYPIPRKFEIEPQSSAHEPGG PQSSAHEPGGSLSERRSVICDISPLRQIVR R K F E R R 1 1 0 0 0 1 4 2 1 1 1 1 0 1 2 4 0 0 0 0 0 0 20 1 2184.0447 W5ZR30;Q9UGU0 W5ZR30 844 863 TCF20 Transcription factor 20 yes no 3 0.0025322 38.26 2 0.69634 0.89397 NaN 1 Median 0.69634 0.89397 NaN 1 0 Median NaN NaN NaN 0 0 Median 6330100 2489900 3840200 6330100 2489900 3840200 0 0 0 6209 1783 6349 22577;22578 34146;34147;34148 34146 3 KFEQGFITDPVVLSPSHTVGDVLEAK NCTPEFQANEVRKVKKFEQGFITDPVVLSP VLSPSHTVGDVLEAKMRHGFSGIPITETGT K K F A K M 1 0 0 2 0 1 2 2 1 1 2 2 0 2 2 2 2 0 0 4 0 0 26 1 2812.4647 B4DNJ7;B3KRZ3;Q6ZNB1;Q5H9Q6;P20839;C9K0R9 B4DNJ7 109 134 IMPDH;DKFZp781N0678;IMPDH1 Inosine-5-monophosphate dehydrogenase;Inosine-5-monophosphate dehydrogenase 1 yes no 3;4 2.4068E-07 80.868 3 0.44328 0.55 24.205 2 Median 0.44328 0.55 24.205 2 0 Median NaN NaN NaN 0 0 Median 17809000 13177000 4631300 17809000 13177000 4631300 0 0 0 6210 772 6350 22579;22580;22581 34149;34150;34151;34152 34149 3 KFESEILEAISQNSVVIIR DLQAILQERELLPVKKFESEILEAISQNSV EILEAISQNSVVIIRGATGCGKTTQVPQFI K K F I R G 1 1 1 0 0 1 3 0 0 4 1 1 0 1 0 3 0 0 0 2 0 0 19 1 2174.1947 Q08211;Q58F26;Q6PJK6 Q08211 392 410 DHX9 ATP-dependent RNA helicase A yes no 3 2.4861E-16 137.43 5 1 0.68151 0.91816 21.526 5 Median 0.70231 0.941 15.43 4 0 Median 0.42508 0.65944 NaN 1 0 Median 52379000 35340000 17039000 41646000 27474000 14172000 10733000 7865900 2866700 6211 1448 6351 22582;22583;22584;22585;22586;22587 34153;34154;34155;34156;34157;34158;34159;34160;34161;34162 34153 9 KFGLTPEQFGENLR MYTICQSAGLDGLAKKFGLTPEQFGENLRD KKFGLTPEQFGENLRDSYQRHETEQFPAEP K K F L R D 0 1 1 0 0 1 2 2 0 0 2 1 0 2 1 0 1 0 0 0 0 0 14 1 1634.8417 Q7KZ85 Q7KZ85 538 551 SUPT6H Transcription elongation factor SPT6 yes yes 3 0.0027234 37.013 1 0.72909 0.92144 NaN 1 Median 0.72909 0.92144 NaN 1 0 Median NaN NaN NaN 0 0 Median 6838000 3565400 3272600 6838000 3565400 3272600 0 0 0 6212 1609 6352 22588 34163 34163 1 KFGYVDFESAEDLEK KNDLAVVDVRIGMTRKFGYVDFESAEDLEK KFGYVDFESAEDLEKALELTGLKVFGNEIK R K F E K A 1 0 0 2 0 0 3 1 0 0 1 2 0 2 0 1 0 0 1 1 0 0 15 1 1775.8254 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99 B3KTP9 271 285 NCL Nucleolin yes no 3 0.00895 70.167 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6026500 6026500 0 3660200 3660200 0 2366300 2366300 0 6213 119 6353 22589;22590;22591 34164;34165;34166 34165 3 KFICISDLR KETGYTYILPKNVLKKFICISDLRAQIAGY PKNVLKKFICISDLRAQIAGYLYGVSPPDN K K F L R A 0 1 0 1 1 0 0 0 0 2 1 1 0 1 0 1 0 0 0 0 0 0 9 1 1150.6169 Q6P2Q9;B4DK16;Q53GM6 Q6P2Q9 2113 2121 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.026778 78.939 1 0.64881 0.87222 NaN 1 Median 0.64881 0.87222 NaN 1 0 Median NaN NaN NaN 0 0 Median 5702900 3302400 2400500 5702900 3302400 2400500 0 0 0 6214 1592 6354 22592 34167 34167 1 KFIYALK RVAVEDSVFLVFSLKKFIYALKAPKSFPKG VFLVFSLKKFIYALKAPKSFPKGDIWWNPE K K F L K A 1 0 0 0 0 0 0 0 0 1 1 2 0 1 0 0 0 0 1 0 0 0 7 1 881.53747 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1 B2RWN5 795 801 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.017228 95.793 2 0.8929 1.0984 1.9578 2 Median 0.8929 1.0984 1.9578 2 0 Median NaN NaN NaN 0 0 Median 21659000 11381000 10278000 21659000 11381000 10278000 0 0 0 6215 748 6355 22593;22594 34168;34169 34169 2 KFLDGIYVSEK ALIQQATTVKNKDIRKFLDGIYVSEKGTVQ KDIRKFLDGIYVSEKGTVQQADE_______ R K F E K G 0 0 0 1 0 0 1 1 0 1 1 2 0 1 0 1 0 0 1 1 0 0 11 1 1297.6918 Q53Z07;P32969;H0Y9V9;D6RAN4;Q2NKY6;H0Y9R4 Q53Z07 174 184 RPL9 60S ribosomal protein L9 yes no 2 0.0044289 86.463 2 1 0.83202 1.0209 1.2733 2 Median 0.83202 1.0209 1.2733 2 0 Median NaN NaN NaN 0 0 Median 21777000 12301000 9476300 18738000 9261400 9476300 3039700 3039700 0 6216 1314 6356 22595;22596;22597 34170;34171;34172;34173 34172 4 KFPDRLAEDEGDSEPEAVGQSR HKHLPGHPYVRRKRKKFPDRLAEDEGDSEP EDEGDSEPEAVGQSRGRRQKK_________ K K F S R G 2 2 0 3 0 1 4 2 0 0 1 1 0 1 2 2 0 0 0 1 0 0 22 2 2431.1252 Q9UIG0 Q9UIG0 1456 1477 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 4 0.018596 30.244 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14918000 0 14918000 14918000 0 14918000 0 0 0 6217 1786 6357 22598 34174 34174 1 KFPGSAALVGAVR RQAGPAPAAATAASKKFPGSAALVGAVRKP SKKFPGSAALVGAVRKPVVPSVPMASPAPG K K F V R K 3 1 0 0 0 0 0 2 0 0 1 1 0 1 1 1 0 0 0 2 0 0 13 1 1271.735 Q9BTC0 Q9BTC0 627 639 DIDO1 Death-inducer obliterator 1 yes yes 2;3 0.00057532 54.784 3 3 0.73276 1.1302 7.3465 5 Median 0.88209 1.1502 2.486 2 0 Median 0.69363 1.0389 7.2984 3 0 Median 52374000 31933000 20440000 30156000 19116000 11040000 22218000 12818000 9400400 6218 1713 6358 22599;22600;22601;22602;22603;22604 34175;34176;34177;34178;34179;34180;34181;34182 34177 8 KFQACIDEYFSR PYSECSWEDGALISKKFQACIDEYFSRNQS ISKKFQACIDEYFSRNQSKTTPFKDCKVLK K K F S R N 1 1 0 1 1 1 1 0 0 1 0 1 0 2 0 1 0 0 1 0 0 0 12 1 1562.7188 O14646 O14646 432 443 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 3 0.024441 62.162 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5157500 5157500 0 3980100 3980100 0 1177400 1177400 0 6219 1169 6359 22605;22606 34183;34184 34183 2 KFSNSIPQSQTGNSETATPTNVDLPQVIPK PHTHNMDGFFIAKFKKFSNSIPQSQTGNSE TATPTNVDLPQVIPKSENSSQPAKKAKGAA K K F P K S 1 0 3 1 0 3 1 1 0 2 1 2 0 1 4 4 4 0 0 2 0 0 30 1 3197.6204 P46087 P46087 586 615 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 3 4.5503E-09 72.578 4 2 0.64483 0.79965 16.91 6 Median 0.65347 0.79965 18.912 4 0 Median 0.47846 0.76802 11.191 2 0 Median 154480000 91287000 63193000 97807000 54425000 43382000 56674000 36862000 19811000 6220 1343 6360 22607;22608;22609;22610;22611;22612 34185;34186;34187;34188;34189;34190;34191;34192;34193;34194;34195 34189 10 KFTTDDSICVLGISK EWITAKLKEARGRGKKFTTDDSICVLGISK KFTTDDSICVLGISKRNVIFQPVAELKKQT K K F S K R 0 0 0 2 1 0 0 1 0 2 1 2 0 1 0 2 2 0 0 1 0 0 15 1 1682.8549 Q01813;O14943;Q8WTZ9;B1APP8;H0Y757;Q49A78 Q01813 710 724 PFKP;PFK-P ATP-dependent 6-phosphofructokinase, platelet type yes no 3 0.0019749 48.423 4 0.63605 0.78712 14.359 3 Median 0.63605 0.78712 14.359 3 0 Median NaN NaN NaN 0 0 Median 29904000 20319000 9584600 29904000 20319000 9584600 0 0 0 6221 1434 6361 22613;22614;22615;22616 34196;34197;34198;34199 34198 4 KFVADGIFK ______________________________ QISKKRKFVADGIFKAELNEFLTRELAEDG R K F F K A 1 0 0 1 0 0 0 1 0 1 0 2 0 2 0 0 0 0 0 1 0 0 9 1 1023.5753 P23396;Q53G83;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;E9PQ96;E9PJH4;E9PK82;E9PQX2 P23396 10 18 RPS3 40S ribosomal protein S3 yes no 2 0.0062152 72.928 1 0.7383 0.90501 NaN 1 Median 0.7383 0.90501 NaN 1 0 Median NaN NaN NaN 0 0 Median 13023000 7327300 5695500 13023000 7327300 5695500 0 0 0 6222 1293 6362 22617 34200 34200 1 KFVEEEDDDEEEEEENLDDQDEQGNLK EEYNDEGEVVPRVTKKFVEEEDDDEEEEEE EEENLDDQDEQGNLKGFINDDDDEDEGEED K K F L K G 0 0 2 6 0 2 10 1 0 0 2 2 0 1 0 0 0 0 0 1 0 0 27 1 3268.3175 Q7KZ85 Q7KZ85 29 55 SUPT6H Transcription elongation factor SPT6 yes yes 3 5.6017E-28 152.03 3 1 1.4942 2.0205 104.34 2 Median 0.80866 0.96611 NaN 1 0 Median 2.761 4.2254 NaN 1 0 Median 12089000 4118000 7970700 5923500 2655100 3268400 6165200 1462900 4702300 6223 1609 6363 22618;22619;22620;22621 34201;34202;34203;34204;34205;34206;34207 34203 7 KFYPLEIDYGQDEEAVK TGNAWHSKNFTKYPKKFYPLEIDYGQDEEA YPLEIDYGQDEEAVKKLTVNPGTKSKLPKP K K F V K K 1 0 0 2 0 1 3 1 0 1 1 2 0 1 1 0 0 0 2 1 0 0 17 1 2042.9837 A0A024R3T8;P09874;B4E0E1 A0A024R3T8 637 653 PARP1 Poly [ADP-ribose] polymerase 1 yes no 3 2.8161E-51 210.91 2 2 0.62367 0.87187 44.668 4 Median 1.0777 1.3163 7.9865 2 0 Median 0.37941 0.60975 0.29967 2 0 Median 158540000 92421000 66117000 88358000 41290000 47069000 70180000 51132000 19048000 6224 107 6364 22622;22623;22624;22625 34208;34209;34210;34211;34212;34213 34208 6 KFYPLEIDYGQDEEAVKK TGNAWHSKNFTKYPKKFYPLEIDYGQDEEA PLEIDYGQDEEAVKKLTVNPGTKSKLPKPV K K F K K L 1 0 0 2 0 1 3 1 0 1 1 3 0 1 1 0 0 0 2 1 0 0 18 2 2171.0787 A0A024R3T8;P09874;B4E0E1 A0A024R3T8 637 654 PARP1 Poly [ADP-ribose] polymerase 1 yes no 3 4.3026E-15 131.37 3 2 0.96903 1.0962 46.853 5 Median 0.98421 1.1571 3.3618 3 0 Median 0.28002 0.48496 2.1158 2 0 Median 78450000 41664000 36785000 58582000 27552000 31030000 19868000 14112000 5755800 6225 107 6365 22626;22627;22628;22629;22630 34214;34215;34216;34217;34218;34219;34220 34214 7 KGAIDDLQQGELEAFIQNLNLAK LATLDENEEVIDGGKKGAIDDLQQGELEAF QGELEAFIQNLNLAKYTKASLIEEDEPAEK K K G A K Y 3 0 2 2 0 3 2 2 0 2 4 2 0 1 0 0 0 0 0 0 0 0 23 1 2527.3282 B2R5U7;C9J9W7;Q03701 B2R5U7 73 95 CEBPZ CCAAT/enhancer-binding protein zeta no no 3 2.4212E-33 165.03 3 0.73346 0.89563 NaN 1 Median 0.73346 0.89563 NaN 1 0 Median NaN NaN NaN 0 0 Median 4300400 2038700 2261700 4300400 2038700 2261700 0 0 0 6226 693;1441 6366 22631;22632;22633 34221;34222;34223 34221 3 KGDAASQFLVFCQK PPGRKKTTVSMPRSRKGDAASQFLVFCQKH RKGDAASQFLVFCQKHRDEVVAEHPDASGE R K G Q K H 2 0 0 1 1 2 0 1 0 0 1 2 0 2 0 1 0 0 0 1 0 0 14 1 1597.7923 O96028;Q05CW4;H0Y9L4 O96028 453 466 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 3 1.7481E-10 148.89 4 2 0.89854 1.1608 10.099 6 Median 0.94405 1.1608 6.0696 4 0 Median 0.72553 1.088 18.591 2 0 Median 78789000 40193000 38596000 69393000 36209000 33184000 9395200 3983400 5411800 6227 1228 6367 22634;22635;22636;22637;22638;22639 34224;34225;34226;34227;34228;34229;34230;34231;34232;34233 34225 10 KGDECELLGHSK RGTVVTGTLERGILKKGDECELLGHSKNIR ILKKGDECELLGHSKNIRTVVTGIEMFHKS K K G S K N 0 0 0 1 1 0 2 2 1 0 2 2 0 0 0 1 0 0 0 0 0 0 12 1 1371.6453 P49411 P49411 286 297 TUFM Elongation factor Tu, mitochondrial yes yes 2;3 4.3648E-05 99.834 4 0.47838 0.5919 10.902 3 Plateau 0.47838 0.5919 10.902 3 0 Plateau NaN NaN NaN 0 0 Median 57099000 38475000 18624000 57099000 38475000 18624000 0 0 0 6228 1350 6368 22640;22641;22642;22643 34234;34235;34236;34237 34236 4 KGDEVDGVDEVAK ALKKQLPGVKSEGKRKGDEVDGVDEVAKKK KRKGDEVDGVDEVAKKKSKKEKDKDSKLEK R K G A K K 1 0 0 3 0 0 2 2 0 0 0 2 0 0 0 0 0 0 0 3 0 0 13 1 1359.6518 A0A024R3T8;P09874;B4E0E1;B2R5W3;Q05D33;Q6PJL0;Q96P95 A0A024R3T8 209 221 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 2.4989E-08 104.41 2 2 0.34123 0.53386 19.799 3 Median 0.56395 0.7037 NaN 1 0 Median 0.32349 0.5059 7.6092 2 0 Median 21863000 13414000 8448800 6418100 2011500 4406700 15444000 11402000 4042100 6229 107 6369 22644;22645;22646;22647 34238;34239;34240;34241;34242;34243 34243 6 KGDGGGASGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEAR EQIAAEQKANPDGKKKGDGGGASGGGGGGG ENTTSEAGLPQGEARTRDDGDEEGLLTHSE K K G A R T 4 2 1 1 0 2 3 25 0 0 1 1 0 0 4 6 2 0 0 0 0 0 52 2 4265.8902 A8K4T9;Q53GL6 A8K4T9 208 259 RALY yes no 4 3.2587E-16 62.264 3 1 0.73769 1.0247 35.787 4 Median 0.84366 1.0247 36.061 3 0 Plateau 0.82647 1.3312 NaN 1 0 Median 54643000 31179000 23464000 43283000 25201000 18082000 11360000 5977700 5382200 6230 608 6370 22648;22649;22650;22651 34244;34245;34246;34247;34248;34249;34250;34251;34252;34253;34254;34255 34245 12 KGDIIQLQR HEELMLGDPCLKDLKKGDIIQLQRRGFFIC CLKDLKKGDIIQLQRRGFFICDQPYEPVSP K K G Q R R 0 1 0 1 0 2 0 1 0 2 1 1 0 0 0 0 0 0 0 0 0 0 9 1 1069.6244 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 666 674 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 6.496E-05 152.06 2 2 1.1704 1.6568 122.57 4 Median 0.39012 0.51373 36.214 2 0 Median 2.7005 4.1615 0.86878 2 0 Median 56892000 31865000 25027000 37506000 26513000 10993000 19386000 5351400 14034000 6231 1242 6371 22652;22653;22654;22655 34256;34257;34258;34259;34260 34256 5 KGDILTLLNSTNK LYDYQEKSPREVTMKKGDILTLLNSTNKDW MKKGDILTLLNSTNKDWWKVEVNDRQGFVP K K G N K D 0 0 2 1 0 0 0 1 0 1 3 2 0 0 0 1 2 0 0 0 0 0 13 1 1415.7984 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 990 1002 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2;3 1.7737E-16 172.33 4 0.80462 0.98819 2.6351 3 Median 0.80462 0.98819 2.6351 3 0 Median NaN NaN NaN 0 0 Median 43464000 17480000 25984000 43464000 17480000 25984000 0 0 0 6232 1476 6372 22656;22657;22658;22659 34261;34262;34263;34264;34265 34261 5 KGDIVDIK KHGVVPLATYMRIYKKGDIVDIKGMGTVQK TYMRIYKKGDIVDIKGMGTVQKGMPHKCYH K K G I K G 0 0 0 2 0 0 0 1 0 2 0 2 0 0 0 0 0 0 0 1 0 0 8 1 886.51238 Q6IAX2;P46778;G3V1B3;M0R181;Q59GK9 Q6IAX2 36 43 RPL21 60S ribosomal protein L21 yes no 2 0.00022415 122.33 5 2 0.69387 0.94623 8.8224 5 Median 0.75541 0.91894 12.334 3 0 Median 0.59681 0.95909 1.9087 2 0 Median 1287200000 739190000 547960000 1219000000 696520000 522470000 68159000 42669000 25491000 6233 1345 6373 22660;22661;22662;22663;22664;22665;22666 34266;34267;34268;34269;34270;34271;34272;34273;34274;34275;34276;34277 34270 12 KGDLDTAAVKVEFDEEFSGAPVEGAGEEALTPSVPINK TAMKADASKKLLKKKKGDLDTAAVKVEFDE GAGEEALTPSVPINKGPKPKREKKEPGTRV K K G N K G 5 0 1 3 0 0 6 4 0 1 2 3 0 2 3 2 2 0 0 4 0 0 38 2 3915.9266 Q71UH4;Q02880;Q59H80;B4DLV2;Q8WTY5;B7ZB27 Q71UH4 1234 1271 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 4 0.0054696 23.204 2 0.59108 0.67867 10.883 2 Median 0.59108 0.67867 10.883 2 0 Median NaN NaN NaN 0 0 Median 13556000 8142200 5413500 13556000 8142200 5413500 0 0 0 6234 1437 6374 22667;22668 34278;34279;34280;34281 34279 4 KGDVEGSQSQDEGEGSGESERGSGSQSSVPSVDQFTGVGIR FQKLVPGGKATLVMKKGDVEGSQSQDEGEG SSVPSVDQFTGVGIRVSFTGKQGEMREMQQ K K G I R V 0 2 0 3 0 4 5 9 0 1 0 1 0 1 1 9 1 0 0 4 0 0 41 2 4111.8439 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 1059 1099 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 4 4.828E-10 63.008 2 0.45697 0.55198 14.626 2 Median 0.45697 0.55198 14.626 2 0 Median NaN NaN NaN 0 0 Median 12157000 7587000 4570400 12157000 7587000 4570400 0 0 0 6235 663 6375 22669;22670 34282;34283;34284;34285;34286 34282 5 KGEDEYANVDAIVVSVGVDEEIVYAK DAYYRRVKRLYSNWRKGEDEYANVDAIVVS IVVSVGVDEEIVYAKSTALQTWLFGYELTD R K G A K S 3 0 1 3 0 0 4 2 0 2 0 2 0 0 0 1 0 0 2 6 0 0 26 1 2810.3862 Q9Y5B9;G3V5A4;G3V401 Q9Y5B9 23 48 SUPT16H FACT complex subunit SPT16 yes no 3 0.045783 9.2092 1 0.79312 0.94622 NaN 1 Median 0.79312 0.94622 NaN 1 0 Median NaN NaN NaN 0 0 Median 3162900 2168500 994460 3162900 2168500 994460 0 0 0 6236 1829 6376 22671 34287 34287 1 KGEDVLGSVR PALSAALYYLVVQGKKGEDVLGSVRRALTH VVQGKKGEDVLGSVRRALTHIDHSLSRQNC K K G V R R 0 1 0 1 0 0 1 2 0 0 1 1 0 0 0 1 0 0 0 2 0 0 10 1 1058.572 A8K492;P56192;A0A024RBA2;F5H2V6 A8K492 109 118 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 0.034117 72.096 2 0.46603 0.61596 8.322 2 Median 0.46603 0.61596 8.322 2 0 Median NaN NaN NaN 0 0 Median 18891000 13598000 5292900 18891000 13598000 5292900 0 0 0 6237 602 6377 22672;22673 34288;34289 34288 2 KGEFETGFEK GASQADLAVLVISARKGEFETGFEKGGQTR VISARKGEFETGFEKGGQTREHAMLAKTAG R K G E K G 0 0 0 0 0 0 3 2 0 0 0 2 0 2 0 0 1 0 0 0 0 0 10 1 1170.5557 Q8IYD1;B4DQM6;H3BR35;Q7KZX8;B2RCT6;A8K2W7;P15170 H3BR35 193 202 GSPT2;GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3B;Eukaryotic peptide chain release factor GTP-binding subunit ERF3A no no 2 0.01025 115.91 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2806800 2806800 0 2806800 2806800 0 0 0 0 6238 586;1629 6378 22674 34290 34290 1 KGENYVYINEATR VEDPETGLYLLQIIKKGENYVYINEATRHV IKKGENYVYINEATRHVLQSRTAKMRVGRF K K G T R H 1 1 2 0 0 0 2 1 0 1 0 1 0 0 0 0 1 0 2 1 0 0 13 1 1555.7631 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 1762 1774 EPPK1 Epiplakin no no 3 0.0043839 43.316 2 0.71575 0.9244 NaN 1 Median 0.71575 0.9244 NaN 1 0 Median NaN NaN NaN 0 0 Median 11328000 7427300 3900300 11328000 7427300 3900300 0 0 0 6239 373;1386 6379 22675;22676 34291;34292 34292 2 KGGEFDEFVNDDTDDDLPISK TKEKKRGGGGGRRSKKGGEFDEFVNDDTDD EFVNDDTDDDLPISKKKKRRKGSGSEQEGE K K G S K K 0 0 1 6 0 0 2 2 0 1 1 2 0 2 1 1 1 0 0 1 0 0 21 1 2355.039 A8K6X9;Q6PD62 A8K6X9 913 933 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 3 3.4549E-05 80.016 1 0.85111 1.0339 NaN 1 Median 0.85111 1.0339 NaN 1 0 Median NaN NaN NaN 0 0 Median 3734000 2220600 1513500 3734000 2220600 1513500 0 0 0 6240 629 6380 22677 34293 34293 0 KGHAVGDIPGVR FIEENDEVLVAGFGRKGHAVGDIPGVRFKV FGRKGHAVGDIPGVRFKVVKVANVSLLALY R K G V R F 1 1 0 1 0 0 0 3 1 1 0 1 0 0 1 0 0 0 0 2 0 0 12 1 1204.6677 A8K517;P62266;D6RD47 A8K517 108 119 RPS23 40S ribosomal protein S23 yes no 2;3;4 1.3253E-08 139.31 12 1 0.97741 1.2772 16.424 13 Median 0.97925 1.2877 8.7446 12 0 Median 0.49996 0.7835 NaN 1 0 Median 2103100000 990260000 1112800000 2090600000 981490000 1109100000 12473000 8772100 3700800 6241 611 6381 22678;22679;22680;22681;22682;22683;22684;22685;22686;22687;22688;22689;22690 34294;34295;34296;34297;34298;34299;34300;34301;34302;34303;34304;34305;34306;34307;34308;34309;34310;34311;34312;34313;34314;34315;34316;34317 34303 24 KGIDYDFPSLILQK RFKKKERLLRKKLAKKGIDYDFPSLILQKT KKGIDYDFPSLILQKTESISKTNRQTSTKG K K G Q K T 0 0 0 2 0 1 0 1 0 2 2 2 0 1 1 1 0 0 1 0 0 0 14 1 1635.8872 Q9BYG3;C9J808;C9J6C5 Q9BYG3 179 192 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2;3 5.1319E-44 199.96 9 3 1.0338 1.2763 22.577 9 Median 0.95858 1.1776 10.986 7 0 Median 1.2078 1.859 18.015 2 0 Median 186930000 100360000 86568000 170430000 90830000 79600000 16495000 9527800 6967300 6242 1726 6382 22691;22692;22693;22694;22695;22696;22697;22698;22699;22700;22701;22702 34318;34319;34320;34321;34322;34323;34324;34325;34326;34327;34328;34329;34330;34331;34332;34333;34334;34335;34336 34322 19 KGLTPSQIGVILR LTSDDVKEQIYKLAKKGLTPSQIGVILRDS AKKGLTPSQIGVILRDSHGVAQVRFVTGNK K K G L R D 0 1 0 0 0 1 0 2 0 2 2 1 0 0 1 1 1 0 0 1 0 0 13 1 1380.8453 P62277;J3KMX5 P62277 43 55 RPS13 40S ribosomal protein S13 yes no 3 3.9562E-06 129.76 3 0.97509 1.2994 17.273 3 Median 0.97509 1.2994 17.273 3 0 Median NaN NaN NaN 0 0 Median 32993000 17410000 15583000 32993000 17410000 15583000 0 0 0 6243 1403 6383 22703;22704;22705 34337;34338;34339;34340 34339 3 KGPDGYDPQFITK YSLLERLLTYNSLYKKGPDGYDPQFITKLL YKKGPDGYDPQFITKLLRNYRSHPTILDIP K K G T K L 0 0 0 2 0 1 0 2 0 1 0 2 0 1 2 0 1 0 1 0 0 0 13 1 1464.7249 B7Z700;Q5JR04;Q9HCE1;B3KQ43 B7Z700 653 665 MOV10 Putative helicase MOV-10 yes no 2 0.00039919 68.536 1 0.75293 0.91035 NaN 1 Median 0.75293 0.91035 NaN 1 0 Median NaN NaN NaN 0 0 Median 5323700 2533000 2790700 5323700 2533000 2790700 0 0 0 6244 916 6384 22706 34341 34341 1 KGPEPVPLEFIPAQGLLGR LELTAYEIFERDLKKKGPEPVPLEFIPAQG PVPLEFIPAQGLLGRPGELCAQHFTLS___ K K G G R P 1 1 0 0 0 1 2 3 0 1 3 1 0 1 4 0 0 0 0 1 0 0 19 1 2017.136 Q9BVI4 Q9BVI4 486 504 NOC4L Nucleolar complex protein 4 homolog yes yes 3 0.043228 11.158 1 0.70102 1.0608 NaN 1 Median NaN NaN NaN 0 0 Median 0.70102 1.0608 NaN 1 0 Median 5747500 3255200 2492400 0 0 0 5747500 3255200 2492400 6245 1718 6385 22707 34342 34342 1 KGPEPVPLEFIPAQGLLGRPGELCAQHFTLS LELTAYEIFERDLKKKGPEPVPLEFIPAQG LGRPGELCAQHFTLS_______________ K K G L S - 2 1 0 0 1 2 3 4 1 1 5 1 0 2 5 1 1 0 0 1 0 0 31 2 3357.7544 Q9BVI4 Q9BVI4 486 516 NOC4L Nucleolar complex protein 4 homolog yes yes 4 4.3238E-06 42.121 2 0.82263 1.0842 2.498 2 Median 0.82263 1.0842 2.498 2 0 Median NaN NaN NaN 0 0 Median 14773000 8276900 6496300 14773000 8276900 6496300 0 0 0 6246 1718 6386 22708;22709 34343;34344 34344 2 KGPGLAVQSGDK KGKRINVELSTKGQKKGPGLAVQSGDKTKK GQKKGPGLAVQSGDKTKKPGAGDTAFPGTG K K G D K T 1 0 0 1 0 1 0 3 0 0 1 2 0 0 1 1 0 0 0 1 0 0 12 1 1155.6248 A0A0S2Z4Z0;Q96PK6;Q59GV2 A0A0S2Z4Z0 153 164 RBM14 RNA-binding protein 14 yes no 2;3 1.622E-07 132.03 5 1 0.38064 0.47201 12.456 5 Median 0.38064 0.47201 12.456 5 0 Median NaN NaN NaN 0 0 Median 88804000 60889000 27915000 85250000 57335000 27915000 3554100 3554100 0 6247 472 6387 22710;22711;22712;22713;22714;22715 34345;34346;34347;34348;34349;34350 34348 6 KGPLTVAQK AVITLFNEPSAEDSKKGPLTVAQKKAQNIM SAEDSKKGPLTVAQKKAQNIMESFENPFRM K K G Q K K 1 0 0 0 0 1 0 1 0 0 1 2 0 0 1 0 1 0 0 1 0 0 9 1 940.57057 Q01780 Q01780 671 679 EXOSC10 Exosome component 10 yes yes 2 0.036712 44.863 1 0.51845 0.80504 NaN 1 Median NaN NaN NaN 0 0 Median 0.51845 0.80504 NaN 1 0 Median 7087600 5025700 2061900 0 0 0 7087600 5025700 2061900 6248 1433 6388 22716 34351 34351 1 KGPQSLFNAPR LPKGISAGAVQTAGKKGPQSLFNAPRGKKR TAGKKGPQSLFNAPRGKKRPAPGSDEEEEE K K G P R G 1 1 1 0 0 1 0 1 0 0 1 1 0 1 2 1 0 0 0 0 0 0 11 1 1213.6568 P46087;F5H5X6;F5GWB7;F5H709 P46087 92 102 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2;3 4.1984E-10 141.89 6 2 0.87151 0.85666 12.595 5 Linear 0.81748 1.064 15.361 3 0 Plateau 0.50447 0.84123 2.5711 2 0 Median 220040000 84142000 135900000 179030000 57064000 121970000 41005000 27078000 13926000 6249 1343 6389 22717;22718;22719;22720;22721;22722;22723;22724 34352;34353;34354;34355;34356;34357;34358;34359;34360;34361;34362 34354 11 KGQEADLEAGGEEVPEANGSAGK NHQENSRNQKPKKRKKGQEADLEAGGEEVP AGGEEVPEANGSAGKRSKKKKQRKDSASEE K K G G K R 4 0 1 1 0 1 5 5 0 0 1 2 0 0 1 1 0 0 0 1 0 0 23 1 2242.0349 Q9NX58 Q9NX58 225 247 LYAR Cell growth-regulating nucleolar protein yes yes 3 2.8509E-05 72.513 3 1 0.96125 1.2096 20.259 3 Median 1.0987 1.3762 18.245 2 0 Median 0.72117 1.05 NaN 1 0 Median 14449000 6686300 7762300 10738000 4716700 6021500 3710300 1969500 1740700 6250 1766 6390 22725;22726;22727;22728 34363;34364;34365;34366;34367;34368 34365 6 KGQTHTLEDFQR NCAGIAVASKTYNLKKGQTHTLEDFQRVLD NLKKGQTHTLEDFQRVLDVNLMGTFNVIRL K K G Q R V 0 1 0 1 0 2 1 1 1 0 1 1 0 1 0 0 2 0 0 0 0 0 12 1 1458.7215 A0A0S2Z410;Q99714;Q5H928;A0A0S2Z434 A0A0S2Z410 105 116 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 3 0.00024724 63.76 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20696000 20696000 0 20696000 20696000 0 0 0 0 6251 458 6391 22729 34369 34369 1 KGQVIQF IKRCKHFELGGDKKRKGQVIQF________ ELGGDKKRKGQVIQF_______________ R K G Q F - 0 0 0 0 0 2 0 1 0 1 0 1 0 1 0 0 0 0 0 1 0 0 7 1 818.46504 J3KQN4;Q969Q0;P83881;B2R4V2;R4GN19 J3KQN4 136 142 RPL36A;RPL36AL 60S ribosomal protein L36a-like;60S ribosomal protein L36a yes no 1;2 0.018061 100.27 5 0.92509 1.2298 8.9712 5 Median 0.92509 1.2298 8.9712 5 0 Median NaN NaN NaN 0 0 Median 1232900000 623940000 608990000 1232900000 623940000 608990000 0 0 0 6252 1136 6392 22730;22731;22732;22733;22734 34370;34371;34372;34373;34374;34375;34376 34372 6 KGSEHQAIVQHLEK SLHQDLVNRKARKLRKGSEHQAIVQHLEKS RKGSEHQAIVQHLEKSFAIASLVETGHLAA R K G E K S 1 0 0 0 0 2 2 1 2 1 1 2 0 0 0 1 0 0 0 1 0 0 14 1 1602.8478 Q14690;B4DH82 Q14690 924 937 PDCD11 Protein RRP5 homolog yes no 3 0.00021008 94.673 2 1.144 1.3608 44.934 2 Median 1.144 1.3608 44.934 2 0 Median NaN NaN NaN 0 0 Median 4661500 2370000 2291500 4661500 2370000 2291500 0 0 0 6253 1494 6393 22735;22736 34377;34378;34379;34380 34377 4 KGTQCVEQIQELVLR DEVFGFISLLNLTERKGTQCVEQIQELVLR KGTQCVEQIQELVLRFCEKNCEKSMVEQLD R K G L R F 0 1 0 0 1 3 2 1 0 1 2 1 0 0 0 0 1 0 0 2 0 0 15 1 1799.9564 Q9P287;B4DUS0 Q9P287 137 151 BCCIP BRCA2 and CDKN1A-interacting protein yes no 3 0.0023226 44.691 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1943000 0 1943000 1943000 0 1943000 0 0 0 6254 1779 6394 22737 34381 34381 1 KGTVEGFEPADNK ITLKKYDGRTKPIPKKGTVEGFEPADNKCL PKKGTVEGFEPADNKCLLRATDGKKKISTV K K G N K C 1 0 1 1 0 0 2 2 0 0 0 2 0 1 1 0 1 0 0 1 0 0 13 1 1390.6729 P37108;H0YLA2 P37108 43 55 SRP14 Signal recognition particle 14 kDa protein yes no 2;3 1.8376E-25 198.52 6 1 1.1242 1.3727 26.445 7 Median 1.157 1.4196 14.431 6 0 Median 0.51999 0.75691 NaN 1 0 Median 87328000 39960000 47367000 83627000 37597000 46030000 3700700 2363200 1337500 6255 1326 6395 22738;22739;22740;22741;22742;22743;22744 34382;34383;34384;34385;34386;34387;34388;34389;34390;34391 34382 10 KGTVLLADNVICPGAPDFLAHVR YLPDTLLLEECGLLRKGTVLLADNVICPGA NVICPGAPDFLAHVRGSSCFECTHYQSFLE R K G V R G 3 1 1 2 1 0 0 2 1 1 3 1 0 1 2 0 1 0 0 3 0 0 23 1 2462.3104 A0A140VJG8;P21964 A0A140VJG8 212 234 COMT Catechol O-methyltransferase yes no 4 0.00015516 74.308 2 0.61094 0.79441 NaN 1 Median 0.61094 0.79441 NaN 1 0 Median NaN NaN NaN 0 0 Median 16866000 11158000 5707800 16866000 11158000 5707800 0 0 0 6256 495 6396 22745;22746 34392;34393 34393 2 KGVAINFVK ELYIHRIGRSGRYGRKGVAINFVKNDDIRI SGRYGRKGVAINFVKNDDIRILRDIEQYYS R K G V K N 1 0 1 0 0 0 0 1 0 1 0 2 0 1 0 0 0 0 0 2 0 0 9 1 974.5913 A0A024R8W0;P38919 A0A024R8W0 374 382 DDX48;EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 0.00021038 140.09 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3694600 3694600 0 3694600 3694600 0 0 0 0 6257 206 6397 22747 34394 34394 1 KGVNLPGAAVDLPAVSEK FLVTEVENGGSLGSKKGVNLPGAAVDLPAV NLPGAAVDLPAVSEKDIQDLKFGVEQDVDM K K G E K D 3 0 1 1 0 0 1 2 0 0 2 2 0 0 2 1 0 0 0 3 0 0 18 1 1763.9781 V9HWB8;P14618;B4DNK4;H3BTN5;A0A024R5Z9;B4DRT3;A0A024R609;H3BQ34;Q8WUW7;Q504U3;H3BR70 V9HWB8 207 224 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 3 4.4347E-05 81.643 3 2 0.68758 0.85401 NaN 1 Median 0.68758 0.85401 NaN 1 0 Median NaN NaN NaN 0 0 Median 21662000 10061000 11602000 14593000 10061000 4532400 7069100 0 7069100 6258 1267 6398 22748;22749;22750;22751;22752 34395;34396;34397;34398;34399;34400 34398 6 KHEAIETDIAAYEER DNFGFDLPAVEAATKKHEAIETDIAAYEER KHEAIETDIAAYEERVQAVVAVARELEAEN K K H E R V 3 1 0 1 0 0 4 0 1 2 0 1 0 0 0 0 1 0 1 0 0 0 15 1 1773.8533 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;F8W6C1 B2ZZ89 463 477 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 0.0019701 36.022 1 0.78203 1.0156 NaN 1 Median 0.78203 1.0156 NaN 1 0 Median NaN NaN NaN 0 0 Median 36923000 19746000 17177000 36923000 19746000 17177000 0 0 0 6259 346 6399 22753 34401;34402;34403 34403 3 KHPDASVNFSEFSK SYAFFVQTCREEHKKKHPDASVNFSEFSKK KKHPDASVNFSEFSKKCSERWKTMSAKEKG K K H S K K 1 0 1 1 0 0 1 0 1 0 0 2 0 2 1 3 0 0 0 1 0 0 14 1 1591.7631 Q5T7C4;B7Z965;Q59GW1;A0A024RDR0;P09429;Q9NYD7;Q75MM1 Q5T7C4 30 43 HMGB1;HMG1;WUGSC:H_NH0244E06.1 High mobility group protein B1 yes no 3 0.01124 56.872 3 0.88473 1.0817 10.862 3 Median 0.88473 1.0817 10.862 3 0 Median NaN NaN NaN 0 0 Median 73080000 37923000 35157000 73080000 37923000 35157000 0 0 0 6260 322 6400 22754;22755;22756 34404;34405;34406 34404 2 KHPDFPK AQEHVKNPYKGKKLKKHPDFPKKPLTPYFR PYKGKKLKKHPDFPKKPLTPYFRFFMEKRA K K H P K K 0 0 0 1 0 0 0 0 1 0 0 2 0 1 2 0 0 0 0 0 0 0 7 1 867.46029 E9PKP7;P17480;A8K962;B4DNQ1;Q05BZ1;Q9BQR2 E9PKP7 107 113 UBTF Nucleolar transcription factor 1 yes no 2 0.015275 87.754 2 0.73566 0.90722 NaN 1 Median 0.73566 0.90722 NaN 1 0 Median NaN NaN NaN 0 0 Median 8015100 4618700 3396400 8015100 4618700 3396400 0 0 0 6261 1039 6401 22757;22758 34407;34408 34408 2 KHPDSSVNFAEFSK SYAFFVQTCREEHKKKHPDSSVNFAEFSKK KKHPDSSVNFAEFSKKCSERWKTMSAKEKS K K H S K K 1 0 1 1 0 0 1 0 1 0 0 2 0 2 1 3 0 0 0 1 0 0 14 1 1591.7631 D6R9A6;Q5U071;P26583 D6R9A6 30 43 HMGB2 High mobility group protein B2 yes no 3 6.2862E-05 68.751 3 1.2103 1.4966 7.1736 3 Median 1.2103 1.4966 7.1736 3 0 Median NaN NaN NaN 0 0 Median 66787000 29979000 36808000 66787000 29979000 36808000 0 0 0 6262 988 6402 22759;22760;22761 34409;34410;34411;34412 34412 4 KHPSSPECLVSAQK SERLDFVCSFLQKNRKHPSSPECLVSAQKV RKHPSSPECLVSAQKVLEGSELELAKMTML R K H Q K V 1 0 0 0 1 1 1 0 1 0 1 2 0 0 2 3 0 0 0 1 0 0 14 1 1566.7824 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;F5H0Z7;F5H763;Q86XH4;G1UI36;F5H2F3;F5H3L6;F5GZW1;F5H1L0;F8W6T3;A8K394;Q4LE64;Q14980 Q4LE64 73 86 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 0.0004537 87.363 2 0.6527 0.81151 12.623 2 Median 0.6527 0.81151 12.623 2 0 Median NaN NaN NaN 0 0 Median 16957000 10407000 6549200 16957000 10407000 6549200 0 0 0 6263 148;1499;590 6403 22762;22763 34413;34414;34415;34416 34413 4 KICYQEVSQCFGVLSSR QKLHIRTVPLYESPRKICYQEVSQCFGVLS CYQEVSQCFGVLSSRIEVQDTSGGTTALRP R K I S R I 0 1 0 0 2 2 1 1 0 1 1 1 0 1 0 3 0 0 1 2 0 0 17 1 2059.9819 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 723 739 DDB1 DNA damage-binding protein 1 yes no 3 0.032605 39.585 2 0.50224 0.68733 NaN 1 Median 0.50224 0.68733 NaN 1 0 Median NaN NaN NaN 0 0 Median 2853200 1084700 1768500 2853200 1084700 1768500 0 0 0 6264 1520 6404 22764;22765 34417;34418 34417 2 KIDDPIDEEEEFEELK LVPASVKVLRRSNRKKIDDPIDEEEEFEEL IDDPIDEEEEFEELKGSEPHMRTRNQGRRT K K I L K G 0 0 0 3 0 0 6 0 0 2 1 2 0 1 1 0 0 0 0 0 0 0 16 1 1976.9102 Q8WWQ0;Q9NWP3 Q8WWQ0 1745 1760 PHIP PH-interacting protein yes no 2;3 2.0562E-50 208.39 7 3 0.84279 1.05 13.947 7 Median 0.88398 1.0833 16.819 5 0 Median 0.62779 1.0059 1.6327 2 0 Median 215670000 122900000 92770000 168940000 91058000 77885000 46728000 31842000 14886000 6265 1668 6405 22766;22767;22768;22769;22770;22771;22772;22773;22774;22775 34419;34420;34421;34422;34423;34424;34425;34426;34427;34428;34429;34430;34431;34432;34433 34419 15 KIEDNNTLVFIVDVK YAIIKFPLTTESAMKKIEDNNTLVFIVDVK KIEDNNTLVFIVDVKANKHQIKQAVKKLYD K K I V K A 0 0 2 2 0 0 1 0 0 2 1 2 0 1 0 0 1 0 0 3 0 0 15 1 1745.9564 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7 H7BY10 91 105 RPL23A 60S ribosomal protein L23a yes no 2;3 1.4692E-87 263.9 77 6 0.90927 1.1126 21.226 52 Median 0.93244 1.1368 17.862 47 0 Median 0.46383 0.74341 6.7217 5 0 Median 2716500000 1402400000 1314000000 2370800000 1157100000 1213800000 345650000 245380000 100280000 6266 658 6406 22776;22777;22778;22779;22780;22781;22782;22783;22784;22785;22786;22787;22788;22789;22790;22791;22792;22793;22794;22795;22796;22797;22798;22799;22800;22801;22802;22803;22804;22805;22806;22807;22808;22809;22810;22811;22812;22813;22814;22815;22816;22817;22818;22819;22820;22821;22822;22823;22824;22825;22826;22827;22828;22829;22830;22831;22832;22833;22834;22835;22836;22837;22838;22839;22840;22841;22842;22843;22844;22845;22846;22847;22848;22849;22850;22851;22852;22853;22854;22855;22856;22857;22858 34434;34435;34436;34437;34438;34439;34440;34441;34442;34443;34444;34445;34446;34447;34448;34449;34450;34451;34452;34453;34454;34455;34456;34457;34458;34459;34460;34461;34462;34463;34464;34465;34466;34467;34468;34469;34470;34471;34472;34473;34474;34475;34476;34477;34478;34479;34480;34481;34482;34483;34484;34485;34486;34487;34488;34489;34490;34491;34492;34493;34494;34495;34496;34497;34498;34499;34500;34501;34502;34503;34504;34505;34506;34507;34508;34509;34510;34511;34512;34513;34514;34515;34516;34517;34518;34519;34520;34521;34522;34523;34524;34525;34526;34527;34528;34529;34530;34531;34532;34533;34534;34535;34536;34537;34538;34539;34540;34541;34542;34543;34544;34545;34546;34547;34548;34549;34550;34551;34552;34553 34476 114 KIEFSLPDLEGR DTLDPALMRPGRLDRKIEFSLPDLEGRTHI LDRKIEFSLPDLEGRTHIFKIHARSMSVER R K I G R T 0 1 0 1 0 0 2 1 0 1 2 1 0 1 1 1 0 0 0 0 0 0 12 1 1402.7456 A0A140VK70;P35998;Q75L23 A0A140VK70 340 351 PSMC2 26S protease regulatory subunit 7 yes no 2;3 0.0023937 98.754 3 0.36205 0.48431 NaN 1 Median 0.36205 0.48431 NaN 1 0 Median NaN NaN NaN 0 0 Median 21098000 20217000 881450 21098000 20217000 881450 0 0 0 6267 510 6407 22859;22860;22861 34554;34555;34556;34557 34555 4 KIEFVVVGPEAPLAAGIVGNLR SISDHTALAQFCKEKKIEFVVVGPEAPLAA GPEAPLAAGIVGNLRSAGVQCFGPTAEAAQ K K I L R S 3 1 1 0 0 0 2 3 0 2 2 1 0 1 2 0 0 0 0 4 0 0 22 1 2248.2943 Q3B7A7;Q59HH3;P22102;Q15374;F8WD69;C9JBJ1;C9JTV6;C9JZG2;C9JKQ7 Q3B7A7 66 87 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 3 1.6857E-05 83.251 5 1 0.22221 0.29305 25.033 5 Median 0.22221 0.29305 25.033 5 0 Median NaN NaN NaN 0 0 Median 119230000 94396000 24837000 115290000 94396000 20891000 3946200 0 3946200 6268 1289 6408 22862;22863;22864;22865;22866;22867 34558;34559;34560;34561;34562;34563;34564;34565;34566 34561 9 KIEHEGQECLSQR RLQEKRFIQKYHSIKKIEHEGQECLSQRNR IKKIEHEGQECLSQRNRAASVIQKAVRHFL K K I Q R N 0 1 0 0 1 2 3 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 13 1 1612.7628 Q8IZT6;Q4G1H2;Q4G1H0;A0A087WV76;Q5VYL4 Q8IZT6 3169 3181 ASPM Abnormal spindle-like microcephaly-associated protein yes no 3 0.00010326 101.38 2 0.71037 0.93261 18.742 2 Median 0.71037 0.93261 18.742 2 0 Median NaN NaN NaN 0 0 Median 6883200 3795900 3087300 6883200 3795900 3087300 0 0 0 6269 1631 6409 22868;22869 34567;34568;34569 34567 3 KIEISQHAK ______________________________ ______________________________ K K I A K Y 1 0 0 0 0 1 1 0 1 2 0 2 0 0 0 1 0 0 0 0 0 0 9 1 1052.5978 C9J4Z3;P61513;G5E9R3;M0R0A1;Q6P4E4;E9PEL3;M0R2L6 C9J4Z3 4 12 RPL37A 60S ribosomal protein L37a yes no 2;3 3.2299E-29 219.19 8 1 0.77278 0.94793 26.961 8 Median 0.7834 0.95825 10.069 7 0 Median 0.29038 0.45692 NaN 1 0 Median 952130000 512320000 439810000 939210000 502330000 436880000 12916000 9990000 2926300 6270 935 6410 22870;22871;22872;22873;22874;22875;22876;22877;22878 34570;34571;34572;34573;34574;34575;34576;34577;34578;34579;34580;34581;34582;34583 34577 14 KIENSELLDK HFKASMKNFKIEKIKKIENSELLDKFTWKK IEKIKKIENSELLDKFTWKKSQMKEEGKLL K K I D K F 0 0 1 1 0 0 2 0 0 1 2 2 0 0 0 1 0 0 0 0 0 0 10 1 1187.6398 Q7Z2W4;A8K9U6;C9J6P4 Q7Z2W4 761 770 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 0.035789 105.2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6271 1613 6411 22879 34584 34584 1 KIENVPTGPNNKPK HVVFGKIIDGLLVMRKIENVPTGPNNKPKL RKIENVPTGPNNKPKLPVVISQCGEM____ R K I P K L 0 0 3 0 0 0 1 1 0 1 0 3 0 0 3 0 1 0 0 1 0 0 14 2 1534.8467 H0YEL5;C9JQD4;Q6FH36;O43447 H0YEL5 72 85 PPIH Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase H yes no 2;3 0.0013273 89.9 3 0.72997 0.83814 10.611 2 Median 0.72997 0.83814 10.611 2 0 Median NaN NaN NaN 0 0 Median 9321900 5433300 3888600 9321900 5433300 3888600 0 0 0 6272 943 6412 22880;22881;22882 34585;34586;34587;34588;34589;34590 34587 6 KIEPFYK AAGVGRFKTNYAVERKIEPFYKGGKAQLDQ KTNYAVERKIEPFYKGGKAQLDQTGQHLFC R K I Y K G 0 0 0 0 0 0 1 0 0 1 0 2 0 1 1 0 0 0 1 0 0 0 7 1 923.51165 Q12788;H3BN88 Q12788 20 26 TBL3 Transducin beta-like protein 3 yes no 2 0.017207 108.09 4 2 0.83311 1.116 7.7412 6 Median 0.91051 1.1192 9.8444 4 0 Median 0.69497 1.115 1.7345 2 0 Median 196930000 107470000 89461000 143140000 74512000 68625000 53794000 32958000 20836000 6273 1456 6413 22883;22884;22885;22886;22887;22888 34591;34592;34593;34594;34595;34596;34597 34594 7 KIEPGTAADSQQIHEEK VFFRVMMAELEKTVKKIEPGTAADSQQIHE EPGTAADSQQIHEEKLLYWNMAVRDFSILI K K I E K L 2 0 0 1 0 2 3 1 1 2 0 2 0 0 1 1 1 0 0 0 0 0 17 1 1879.9276 A0A024R2G2;Q9BXW9 A0A024R2G2 1248 1264 FANCD2 Fanconi anemia group D2 protein yes no 3 0.00098549 87.669 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2178000 2178000 0 2178000 2178000 0 0 0 0 6274 84 6414 22889 34598 34598 1 KIEQVDKEDEITEK DPSGDSTLPTCSKKRKIEQVDKEDEITEKK RKIEQVDKEDEITEKKAKKAKIKVKVEEEE R K I E K K 0 0 0 2 0 1 4 0 0 2 0 3 0 0 0 0 1 0 0 1 0 0 14 2 1702.8625 Q9Y2X3;B3KN82 Q9Y2X3 444 457 NOP58 Nucleolar protein 58 yes no 2;3 6.5188E-18 154.13 5 3 0.51968 0.65849 23.761 7 Median 0.70529 0.8209 19.314 4 0 Median 0.32994 0.57632 17.134 3 0 Median 134250000 86289000 47963000 91038000 55536000 35502000 43214000 30753000 12461000 6275 1810 6415 22890;22891;22892;22893;22894;22895;22896;22897 34599;34600;34601;34602;34603;34604;34605;34606;34607;34608;34609;34610;34611;34612 34612 14 KIEQVDKEDEITEKK DPSGDSTLPTCSKKRKIEQVDKEDEITEKK KIEQVDKEDEITEKKAKKAKIKVKVEEEEE R K I K K A 0 0 0 2 0 1 4 0 0 2 0 4 0 0 0 0 1 0 0 1 0 0 15 3 1830.9575 Q9Y2X3;B3KN82 Q9Y2X3 444 458 NOP58 Nucleolar protein 58 yes no 3 0.0032263 90.476 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 939700 939700 0 939700 939700 0 0 0 0 6276 1810 6416 22898 34613 34613 1 KIEVPAQLK LFSPASEVPRKAKAKKIEVPAQLKELVSDL RKAKAKKIEVPAQLKELVSDLSSQFVISPP K K I L K E 1 0 0 0 0 1 1 0 0 1 1 2 0 0 1 0 0 0 0 1 0 0 9 1 1024.6281 Q8WYP5;B3KRD0 Q8WYP5 2133 2141 AHCTF1 Protein ELYS yes no 2 9.8759E-14 199.7 3 1 0.76056 0.93208 3.4285 4 Median 0.78381 0.95521 3.0444 3 0 Median 0.55659 0.8984 NaN 1 0 Median 243120000 134410000 108710000 219250000 119450000 99807000 23870000 14966000 8904200 6277 1670 6417 22899;22900;22901;22902 34614;34615;34616;34617;34618 34614 5 KIEVSLQPEVPPSK GFQNSEQSRRILRRRKIEVSLQPEVPPSKQ RKIEVSLQPEVPPSKQLLSTIMKDSEKHIE R K I S K Q 0 0 0 0 0 1 2 0 0 1 1 2 0 0 3 2 0 0 0 2 0 0 14 1 1549.8716 Q9H8H0;J3QR28 Q9H8H0 386 399 NOL11 Nucleolar protein 11 yes no 2;3 0.00048215 48.527 2 1.1374 1.3638 4.2545 2 Median 1.1374 1.3638 4.2545 2 0 Median NaN NaN NaN 0 0 Median 9339400 4150100 5189300 9339400 4150100 5189300 0 0 0 6278 1743 6418 22903;22904 34619;34620 34620 2 KIGDTSVSYK TSEQDQPMGGWEMIRKIGDTSVSYKYTSRY WEMIRKIGDTSVSYKYTSRYVLKAGQTVTI R K I Y K Y 0 0 0 1 0 0 0 1 0 1 0 2 0 0 0 2 1 0 1 1 0 0 10 1 1096.5764 P20700;B4DZT3 P20700 474 483 LMNB1 Lamin-B1 yes no 2 0.043709 40.496 1 1.6122 2.2977 NaN 1 Median NaN NaN NaN 0 0 Median 1.6122 2.2977 NaN 1 0 Median 2825000 1229700 1595300 0 0 0 2825000 1229700 1595300 6279 1285 6419 22905 34621 34621 1 KIGVFSK FDKMIEAIKESKNGKKIGVFSKDKFPGEFM IKESKNGKKIGVFSKDKFPGEFMKSWNDCL K K I S K D 0 0 0 0 0 0 0 1 0 1 0 2 0 1 0 1 0 0 0 1 0 0 7 1 777.47487 Q9Y5B9;Q0VGA3 Q9Y5B9 133 139 SUPT16H FACT complex subunit SPT16 yes no 2 0.04755 89.296 1 0.90872 1.1195 NaN 1 Median 0.90872 1.1195 NaN 1 0 Median NaN NaN NaN 0 0 Median 10658000 5216400 5441600 10658000 5216400 5441600 0 0 0 6280 1829 6420 22906 34622 34622 1 KIIEDQQESLNK TWEVLEGEVEKEALKKIIEDQQESLNKWKS ALKKIIEDQQESLNKWKSKGRRFKGKGKGN K K I N K W 0 0 1 1 0 2 2 0 0 2 1 2 0 0 0 1 0 0 0 0 0 0 12 1 1443.7569 B5BUB5;P05455;Q14730;Q9UMH5 B5BUB5 317 328 SSB Lupus La protein yes no 2 2.4098E-10 155.33 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 520330 520330 0 520330 520330 0 0 0 0 6281 897 6421 22907 34623 34623 1 KIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK LSISADIETIGEILKKIIPTLEEGLQLPSP LESDAVECLNYQHYKGSDFDCELRLLIHQS K K I Y K G 2 0 1 1 1 3 4 1 1 2 6 2 0 0 4 3 3 0 2 1 0 0 37 1 4182.1195 A0A024R228;P61978;Q5EC54;B4DFF1 A0A024R228 103 139 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 4 0.0059851 32.801 2 0.35796 0.43968 10.671 2 Median 0.35796 0.43968 10.671 2 0 Median NaN NaN NaN 0 0 Median 20664000 16126000 4537300 20664000 16126000 4537300 0 0 0 6282 77 6422 22908;22909 34624;34625;34626 34624 3 KINPSEDVGSK EFDMSAIPRKRGRPRKINPSEDVGSKAVKE GRPRKINPSEDVGSKAVKEERSPKKKEAPS R K I S K A 0 0 1 1 0 0 1 1 0 1 0 2 0 0 1 2 0 0 0 1 0 0 11 1 1172.6037 Q8WYP5;B3KVE5;B3KRD0 Q8WYP5 1979 1989 AHCTF1 Protein ELYS yes no 2 0.00017113 127.87 2 0.59978 0.72836 32.866 2 Median 0.59978 0.72836 32.866 2 0 Median NaN NaN NaN 0 0 Median 5174900 2829100 2345800 5174900 2829100 2345800 0 0 0 6283 1670 6423 22910;22911 34627;34628;34629 34627 3 KIPCDVTEAEIISLGLPFGK RDRPPCSPSRVLHLRKIPCDVTEAEIISLG VTEAEIISLGLPFGKVTNLLMLKGKSQAFL R K I G K V 1 0 0 1 1 0 2 2 0 3 2 2 0 1 2 1 1 0 0 1 0 0 20 1 2186.1657 A0A024R163;O95758;X6R242 A0A024R163 65 84 ROD1;PTBP3 Polypyrimidine tract-binding protein 3 yes no 3 7.3775E-05 38.271 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4070600 4070600 0 4070600 4070600 0 0 0 0 6284 52 6424 22912 34630 34630 1 KIPDPDSDDVSEVDAR PQAAQPPTLPVEEKKKIPDPDSDDVSEVDA IPDPDSDDVSEVDARHIIENAKQDVDDEYG K K I A R H 1 1 0 5 0 0 1 0 0 1 0 1 0 0 2 2 0 0 0 2 0 0 16 1 1756.8115 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;Q59FZ6 A7E2E1 689 704 SMARCA4 Transcription activator BRG1 yes no 3 0.00014871 37.083 2 2 1.1264 1.6285 33.91 4 Median 0.87758 1.1456 28.853 2 0 Median 1.2061 1.9103 1.6724 2 0 Median 55486000 29488000 25998000 28619000 15431000 13188000 26867000 14057000 12810000 6285 403 6425 22913;22914;22915;22916 34631;34632;34633;34634;34635;34636;34637;34638 34632 8 KIPLVPENLLK ISSCTTRKMAEQEQRKIPLVPENLLKKRKA QEQRKIPLVPENLLKKRKAYQALKATQAKQ R K I L K K 0 0 1 0 0 0 1 0 0 1 3 2 0 0 2 0 0 0 0 1 0 0 11 1 1262.7962 A0A024RD36;Q6DKI1;R4GMU7;B7Z4G0 A0A024RD36 17 27 RPL7L1 60S ribosomal protein L7-like 1 yes no 2;3 0.015193 79.489 2 0.88139 1.0872 0.49533 2 Median 0.88139 1.0872 0.49533 2 0 Median NaN NaN NaN 0 0 Median 15853000 7679600 8173600 15853000 7679600 8173600 0 0 0 6286 311 6426 22917;22918 34639;34640 34639 2 KIPNPDFFEDLEPFR PMIDNPSYQGIWKPRKIPNPDFFEDLEPFR KIPNPDFFEDLEPFRMTPFSAIGLELWSMT R K I F R M 0 1 1 2 0 0 2 0 0 1 1 1 0 3 3 0 0 0 0 0 0 0 15 1 1862.9203 P27824 P27824 401 415 CANX Calnexin yes yes 3 0.00066725 82.349 3 2 0.40139 0.5217 88.857 5 Median 0.34156 0.45823 8.8022 3 0 Median 1.5481 2.3801 7.1251 2 0 Median 31387000 16584000 14803000 18261000 12394000 5866900 13126000 4190300 8935800 6287 1303 6427 22919;22920;22921;22922;22923 34641;34642;34643;34644;34645;34646;34647;34648;34649;34650 34641 10 KIQEILTQVK VKITGHFYACQVAQRKIQEILTQVKQHQQQ QVAQRKIQEILTQVKQHQQQKALQSGPPQS R K I V K Q 0 0 0 0 0 2 1 0 0 2 1 2 0 0 0 0 1 0 0 1 0 0 10 1 1198.7285 O00425 O00425 552 561 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 0.015572 51.436 1 0.59791 0.74002 NaN 1 Median 0.59791 0.74002 NaN 1 0 Median NaN NaN NaN 0 0 Median 9787100 6278300 3508800 9787100 6278300 3508800 0 0 0 6288 1167 6428 22924 34651 34651 1 KIQINQEEER KILDDTEDTVVSQRKKIQINQEEERLKNER VSQRKKIQINQEEERLKNERTVFVGNLPVT K K I E R L 0 1 1 0 0 2 3 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 10 1 1285.6626 P42696;A2A2V2;Q5TCT4 P42696 171 180 RBM34 RNA-binding protein 34 yes no 2 7.4153E-05 119.22 4 1 0.90004 1.2624 20.542 4 Median 0.9734 1.3059 24.399 3 0 Median 0.79411 1.2203 NaN 1 0 Median 26061000 10791000 15270000 20763000 8238700 12524000 5298600 2552200 2746400 6289 1339 6429 22925;22926;22927;22928;22929 34652;34653;34654;34655;34656;34657;34658;34659 34659 8 KIQQNTFTR MPATEKDLAEDAPWKKIQQNTFTRWCNEHL EDAPWKKIQQNTFTRWCNEHLKCVSKRIAN K K I T R W 0 1 1 0 0 2 0 0 0 1 0 1 0 1 0 0 2 0 0 0 0 0 9 1 1134.6146 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98;O75369;A0A024R321;Q14315 P21333 43 51 FLNA;FLNB;FLNC Filamin-A;Filamin-B;Filamin-C no no 2 0.032821 71.692 2 0.98983 1.3173 3.7216 2 Median 0.98983 1.3173 3.7216 2 0 Median NaN NaN NaN 0 0 Median 13115000 6552800 6561800 13115000 6552800 6561800 0 0 0 6290 1287;1199;1486 6430 22930;22931 34660;34661 34661 2 KISENSYSLDDLEIGPGQLSSSTFDSEK QTKILRAQSRSASGRKISENSYSLDDLEIG IGPGQLSSSTFDSEKNESRRNLELPRLSET R K I E K N 0 0 1 3 0 1 3 2 0 2 3 2 0 1 1 7 1 0 1 0 0 0 28 1 3045.4302 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VRN8 F8VQE1 63 90 LIMA1 LIM domain and actin-binding protein 1 yes no 3 2.0836E-07 48.694 2 0.63854 0.79078 14.242 2 Median 0.63854 0.79078 14.242 2 0 Median NaN NaN NaN 0 0 Median 11417000 6107400 5309500 11417000 6107400 5309500 0 0 0 6291 834 6431 22932;22933 34662;34663;34664;34665 34665 4 KITAFVPNDGCLNFIEENDEVLVAGFGR AIRKCVRVQLIKNGKKITAFVPNDGCLNFI FIEENDEVLVAGFGRKGHAVGDIPGVRFKV K K I G R K 2 1 3 2 1 0 3 3 0 2 2 1 0 3 1 0 1 0 0 3 0 0 28 1 3123.5335 A8K517;P62266;D6RD47 A8K517 80 107 RPS23 40S ribosomal protein S23 yes no 3 6.398E-43 121.26 16 2 0.90608 1.1928 41.722 14 Median 0.90796 1.2025 27.827 12 0 Median 0.31296 0.5443 33.504 2 0 Median 1864300000 1002700000 861570000 1666200000 861360000 804790000 198100000 141330000 56774000 6292 611 6432 22934;22935;22936;22937;22938;22939;22940;22941;22942;22943;22944;22945;22946;22947;22948;22949;22950;22951 34666;34667;34668;34669;34670;34671;34672;34673;34674;34675;34676;34677;34678;34679;34680;34681;34682;34683;34684;34685;34686;34687;34688;34689;34690;34691;34692;34693;34694;34695;34696;34697;34698;34699;34700;34701;34702;34703 34696 38 KITAFVPNDGCLNFIEENDEVLVAGFGRK AIRKCVRVQLIKNGKKITAFVPNDGCLNFI IEENDEVLVAGFGRKGHAVGDIPGVRFKVV K K I R K G 2 1 3 2 1 0 3 3 0 2 2 2 0 3 1 0 1 0 0 3 0 0 29 2 3251.6285 A8K517;P62266;D6RD47 A8K517 80 108 RPS23 40S ribosomal protein S23 yes no 4 2.1024E-12 96.133 4 1.0556 1.2914 8.4525 4 Median 1.0556 1.2914 8.4525 4 0 Median NaN NaN NaN 0 0 Median 65105000 28050000 37056000 65105000 28050000 37056000 0 0 0 6293 611 6433 22952;22953;22954;22955 34704;34705;34706;34707;34708;34709;34710;34711 34707 8 KITDGLHALQEASNK VEDSKTLAAKEKEVKKITDGLHALQEASNK KITDGLHALQEASNKDAEALAAAQQHFNAV K K I N K D 2 0 1 1 0 1 1 1 1 1 2 2 0 0 0 1 1 0 0 0 0 0 15 1 1623.858 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 354 368 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2;3 3.6254E-41 214.58 6 2 0.68408 0.93995 7.728 8 Median 0.72996 0.89994 7.2016 6 0 Median 0.61038 0.98105 2.178 2 0 Median 427140000 244330000 182810000 356850000 201140000 155710000 70288000 43191000 27097000 6294 50 6434 22956;22957;22958;22959;22960;22961;22962;22963 34712;34713;34714;34715;34716;34717;34718;34719;34720;34721;34722;34723;34724;34725;34726 34717 15 KITEAIGIISK EMLVQYLQDAYSFSRKITEAIGIISKMMYE SFSRKITEAIGIISKMMYENTTTVVQEVIE R K I S K M 1 0 0 0 0 0 1 1 0 4 0 2 0 0 0 1 1 0 0 0 0 0 11 1 1171.7176 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 633 643 NCAPD2 Condensin complex subunit 1 yes no 2 2.6081E-07 149.49 4 1 0.72714 0.90044 12.052 5 Median 0.73176 0.90209 1.9351 4 0 Median 0.43562 0.69666 NaN 1 0 Median 133340000 80793000 52544000 86377000 47829000 38548000 46960000 32964000 13996000 6295 757 6435 22964;22965;22966;22967;22968 34727;34728;34729;34730;34731;34732;34733;34734 34728 8 KITFPHR LMEKVEVKNYDAALRKITFPHRCLISCSKK KNYDAALRKITFPHRCLISCSKKRQLLLFQ R K I H R C 0 1 0 0 0 0 0 0 1 1 0 1 0 1 1 0 1 0 0 0 0 0 7 1 897.51847 Q969X6;H3BSH7;A0A0J9YWM9;A0A0J9YXV4;A0A0J9YWK2 Q969X6 329 335 CIRH1A Cirhin yes no 3 0.0119 69.383 1 0.70757 0.96043 NaN 1 Median 0.70757 0.96043 NaN 1 0 Median NaN NaN NaN 0 0 Median 4892100 2770200 2121900 4892100 2770200 2121900 0 0 0 6296 1680 6436 22969 34735 34735 1 KITIADCGQLE EAMERFGSRNGKTSKKITIADCGQLE____ KTSKKITIADCGQLE_______________ K K I L E - 1 0 0 1 1 1 1 1 0 2 1 1 0 0 0 0 1 0 0 0 0 0 11 1 1246.6227 B4DM82;V9HWF5;A8K486;P62937 B4DM82 119 129 HEL-S-69p;PPIA Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 2 0.0012104 97.597 2 0.46408 0.58764 NaN 1 Median 0.46408 0.58764 NaN 1 0 Median NaN NaN NaN 0 0 Median 14057000 10900000 3156600 14057000 10900000 3156600 0 0 0 6297 601 6437 22970;22971 34736;34737;34738 34738 3 KITVPGNFQGHSGAQCITCSYK LYEMVSRVMKALVNRKITVPGNFQGHSGAQ FQGHSGAQCITCSYKASSGLLYPLERGFIY R K I Y K A 1 0 1 0 2 2 0 3 1 2 0 2 0 1 1 2 2 0 1 1 0 0 22 1 2452.1627 A0A024R4Z6;Q08945 A0A024R4Z6 325 346 SSRP1 FACT complex subunit SSRP1 yes no 3;4 8.6754E-08 99.881 5 0.78951 0.97455 24.744 5 Median 0.78951 0.97455 24.744 5 0 Median NaN NaN NaN 0 0 Median 89427000 50291000 39136000 89427000 50291000 39136000 0 0 0 6298 132 6438 22972;22973;22974;22975;22976 34739;34740;34741;34742;34743;34744;34745;34746;34747 34742 9 KITVVPSAK ______________________________ AHYNFKKITVVPSAKDFIDLTLSKTQRKTP K K I A K D 1 0 0 0 0 0 0 0 0 1 0 2 0 0 1 1 1 0 0 2 0 0 9 1 941.59097 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8 Q53GS0 8 16 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.0052718 100.25 4 1 0.7565 0.98364 6.5603 5 Median 0.78558 0.96022 7.5428 4 0 Median 0.61961 0.98364 NaN 1 0 Median 270270000 154220000 116050000 248640000 140570000 108070000 21639000 13650000 7988300 6299 975 6439 22977;22978;22979;22980;22981 34748;34749;34750;34751;34752;34753 34749 6 KKDELSDYAEK DGEKKSKKIRDKTSKKKDELSDYAEKSTGK KTSKKKDELSDYAEKSTGKGDSCDSSEDKK K K K E K S 1 0 0 2 0 0 2 0 0 0 1 3 0 0 0 1 0 0 1 0 0 0 11 2 1324.6511 A4LAA3;P46100;A0A096LNL9;B7Z1D8 A4LAA3 1056 1066 ATRX Transcriptional regulator ATRX no no 2 0.029166 117.02 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 632390 632390 0 632390 632390 0 0 0 0 6300 556 6440 22982 34754 34754 1 KKEELLK ______________________________ KARDLRGKKKEELLKQLDDLKVELSQLRVA K K K L K Q 0 0 0 0 0 0 2 0 0 0 2 3 0 0 0 0 0 0 0 0 0 0 7 2 886.54877 P42766;F2Z388;A0A024R866 P42766 13 19 RPL35 60S ribosomal protein L35 yes no 2 0.00016843 187.63 2 0.90673 1.0411 4.6344 2 Median 0.90673 1.0411 4.6344 2 0 Median NaN NaN NaN 0 0 Median 60466000 30598000 29868000 60466000 30598000 29868000 0 0 0 6301 1340 6441 22983;22984 34755;34756 34755 2 KKEELYLQR CHEMKPNLGAIAEYKKKEELYLQRVAELDK AIAEYKKKEELYLQRVAELDKITYERDSFR K K K Q R V 0 1 0 0 0 1 2 0 0 0 2 2 0 0 0 0 0 0 1 0 0 0 9 2 1205.6768 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1098 1106 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 9.1881E-06 110.76 3 0.67568 0.85093 11.694 3 Median 0.67568 0.85093 11.694 3 0 Median NaN NaN NaN 0 0 Median 229070000 134820000 94249000 229070000 134820000 94249000 0 0 0 6302 1760 6442 22985;22986;22987 34757;34758;34759;34760;34761 34760 5 KKEPVGDDESVPENVLSFDDLTADALANLK KLKNLCSKTIGEKMKKKEPVGDDESVPENV LSFDDLTADALANLKVSQIKKVRLLIDEAI K K K L K V 3 0 2 5 0 0 3 1 0 0 4 3 0 1 2 2 1 0 0 3 0 0 30 2 3228.6038 Q0VGA5;Q53HA4;Q5T5C7;P49591 Q0VGA5 70 99 SARS Serine--tRNA ligase, cytoplasmic yes no 4 0.00037092 29.61 1 0.35467 0.41697 NaN 1 Median 0.35467 0.41697 NaN 1 0 Median NaN NaN NaN 0 0 Median 3931400 3000600 930820 3931400 3000600 930820 0 0 0 6303 1353 6443 22988 34762 34762 1 KKPNATRPVTPPR ETLMCSFQILKPAEKKKPNATRPVTPPRGM EKKKPNATRPVTPPRGMITKQAKK______ K K K P R G 1 2 1 0 0 0 0 0 0 0 0 2 0 0 4 0 2 0 0 1 0 0 13 3 1460.8576 A0A024RBP2;P36873;F8W0W8;B4DNE3 A0A024RBP2 302 314 PPP1CC Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit yes no 2;3;4 8.2176E-06 98.04 5 0.9603 1.038 4.7344 5 Median 0.9603 1.038 4.7344 5 0 Median NaN NaN NaN 0 0 Median 130820000 63165000 67658000 130820000 63165000 67658000 0 0 0 6304 279 6444 22989;22990;22991;22992;22993 34763;34764;34765;34766;34767;34768 34765 4 KKPNPVEEEPSR ASGDEGIKVLKQRAKKKPNPVEEEPSRRRP RAKKKPNPVEEEPSRRRPRAPKEKAQPLED K K K S R R 0 1 1 0 0 0 3 0 0 0 0 2 0 0 3 1 0 0 0 1 0 0 12 2 1408.731 P46013 P46013 2652 2663 MKI67 Antigen KI-67 yes yes 2;3 2.0835E-18 166.11 8 3 0.86615 1.0765 21.895 11 Median 0.85181 1.039 5.062 8 0 Median 0.93398 1.6377 3.6282 3 0 Median 896230000 491920000 404310000 813190000 448850000 364340000 83038000 43074000 39964000 6305 1342 6445 22994;22995;22996;22997;22998;22999;23000;23001;23002;23003;23004 34769;34770;34771;34772;34773;34774;34775;34776;34777;34778;34779;34780;34781;34782;34783;34784;34785 34774 17 KKPNPVEEEPSRR ASGDEGIKVLKQRAKKKPNPVEEEPSRRRP AKKKPNPVEEEPSRRRPRAPKEKAQPLEDL K K K R R R 0 2 1 0 0 0 3 0 0 0 0 2 0 0 3 1 0 0 0 1 0 0 13 3 1564.8322 P46013 P46013 2652 2664 MKI67 Antigen KI-67 yes yes 3 0.0019651 89.43 1 0.69695 0.78259 NaN 1 Median 0.69695 0.78259 NaN 1 0 Median NaN NaN NaN 0 0 Median 6258800 3703100 2555700 6258800 3703100 2555700 0 0 0 6306 1342 6446 23005 34786;34787 34786 2 KKVEEVLEEEEEEYVVEK ______________________________ EEVLEEEEEEYVVEKVLDRRVVKGKVEYLL K K K E K V 0 0 0 0 0 0 9 0 0 0 1 3 0 0 0 0 0 0 1 4 0 0 18 2 2236.0998 J3KS05;Q6IBN6;P83916;B5MD17;K7ELA4;C9JWS9 J3KS05 8 25 CBX1 Chromobox protein homolog 1 yes no 3 0.0032465 32.156 1 0.74349 0.84104 NaN 1 Median 0.74349 0.84104 NaN 1 0 Median NaN NaN NaN 0 0 Median 13077000 6378700 6697800 13077000 6378700 6697800 0 0 0 6307 1137 6447 23006 34788;34789;34790 34790 3 KLAYQVLAEK PKIVGRTKDVKEAVRKLAYQVLAEKVHMRA KEAVRKLAYQVLAEKVHMRAMSIAQRVMLL R K L E K V 2 0 0 0 0 1 1 0 0 0 2 2 0 0 0 0 0 0 1 1 0 0 10 1 1161.6758 Q9BPX3;Q6NUR1 Q9BPX3 226 235 NCAPG Condensin complex subunit 3 yes no 2 0.008962 56.202 1 0.51213 0.76292 NaN 1 Median NaN NaN NaN 0 0 Median 0.51213 0.76292 NaN 1 0 Median 4788300 3073000 1715300 0 0 0 4788300 3073000 1715300 6308 1706 6448 23007 34791 34791 1 KLDAEDVIGSR GEGKGTKAFKQPAKRKLDAEDVIGSRRQPR PAKRKLDAEDVIGSRRQPRAPKEKAQPLED R K L S R R 1 1 0 2 0 0 1 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 11 1 1201.6303 P46013 P46013 2892 2902 MKI67 Antigen KI-67 yes yes 2;3 7.9231E-05 111.5 3 3 0.73246 1.0385 11.119 6 Median 0.77706 1.0286 3.9337 3 0 Median 0.68467 1.185 15.889 3 0 Plateau 240470000 141740000 98723000 95494000 55273000 40222000 144970000 86472000 58501000 6309 1342 6449 23008;23009;23010;23011;23012;23013 34792;34793;34794;34795;34796;34797;34798 34795 7 KLDAGNQLALIEELHK VVLEESWDALNAITKKLDAGNQLALIEELH LDAGNQLALIEELHKEIRLIGNESKGEHVP K K L H K E 2 0 1 1 0 1 2 1 1 1 4 2 0 0 0 0 0 0 0 0 0 0 16 1 1790.989 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2222 2237 PRIC295;GCN1L1 Translational activator GCN1 yes no 3 2.3609E-25 166.67 3 0.46252 0.57618 16.801 3 Plateau 0.46252 0.57618 16.801 3 0 Plateau NaN NaN NaN 0 0 Median 28753000 20531000 8222600 28753000 20531000 8222600 0 0 0 6310 1000 6450 23014;23015;23016 34799;34800;34801;34802;34803 34799 5 KLDAQVQELHAK KVLQQVKAESEHKRKKLDAQVQELHAKVSE KRKKLDAQVQELHAKVSEGDRLRVELAEKA K K L A K V 2 0 0 1 0 2 1 0 1 0 2 2 0 0 0 0 0 0 0 1 0 0 12 1 1378.7569 P35580 P35580 1256 1267 MYH10 Myosin-10 yes yes 3 0.030521 23.682 1 0.36656 0.4436 NaN 1 Median 0.36656 0.4436 NaN 1 0 Median NaN NaN NaN 0 0 Median 5601900 3910900 1691000 5601900 3910900 1691000 0 0 0 6311 1320 6451 23017 34804 34804 1 KLDDSCSGSVTYSYSALIVPK FSPKKTSSNCNGEEKKLDDSCSGSVTYSYS SGSVTYSYSALIVPKEMIKKAKKLIETTAN K K L P K E 1 0 0 2 1 0 0 1 0 1 2 2 0 0 1 5 1 0 2 2 0 0 21 1 2289.1199 A4LAA3;P46100;A0A096LNL9;A0A096LNW1;A0A096LNN3 A4LAA3 330 350 ATRX Transcriptional regulator ATRX yes no 3 0.00013179 69.581 2 0.91564 1.1329 44.894 2 Median 0.91564 1.1329 44.894 2 0 Median NaN NaN NaN 0 0 Median 24604000 8966500 15637000 24604000 8966500 15637000 0 0 0 6312 556 6452 23018;23019 34805;34806 34805 2 KLDEAVAEAHLGK THPDKYPVGVHFLPKKLDEAVAEAHLGKLN PKKLDEAVAEAHLGKLNVKLTKLTEKQAQY K K L G K L 3 0 0 1 0 0 2 1 1 0 2 2 0 0 0 0 0 0 0 1 0 0 13 1 1379.7409 Q1RMG2;P23526 Q1RMG2 263 275 AHCY Adenosylhomocysteinase yes no 3 0.005108 34.92 2 0.47116 0.57758 9.0544 2 Median 0.47116 0.57758 9.0544 2 0 Median NaN NaN NaN 0 0 Median 26377000 18172000 8204300 26377000 18172000 8204300 0 0 0 6313 1294 6453 23020;23021 34807;34808 34807 2 KLDELYGTWR GHVGRFCIWTESAFRKLDELYGTWRKAASL ESAFRKLDELYGTWRKAASLKSNYNLPMHK R K L W R K 0 1 0 1 0 0 1 1 0 0 2 1 0 0 0 0 1 1 1 0 0 0 10 1 1279.6561 P36578;Q59GY2;H3BM89;B4DMJ6;Q53G74;B4DMJ2 P36578 259 268 RPL4 60S ribosomal protein L4 yes no 2 0.024309 45.137 2 0.62395 1.0767 2.7705 2 Median NaN NaN NaN 0 0 Median 0.62395 1.0767 2.7705 2 0 Median 111940000 69877000 42065000 0 0 0 111940000 69877000 42065000 6314 1325 6454 23022;23023 34809;34810;34811 34810 3 KLDGFPLLR LDQFDAIDFSDNEVRKLDGFPLLRRLKTLL SDNEVRKLDGFPLLRRLKTLLVNNNRICRI R K L L R R 0 1 0 1 0 0 0 1 0 0 3 1 0 1 1 0 0 0 0 0 0 0 9 1 1057.6284 Q53G61;Q53G21;P09661;H0YKK0;Q6NVW9 Q53G61 56 64 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 2 0.025905 51.346 1 0.80963 1.0236 NaN 1 Median 0.80963 1.0236 NaN 1 0 Median NaN NaN NaN 0 0 Median 6012400 3925400 2086900 6012400 3925400 2086900 0 0 0 6315 1248 6455 23024 34812 34812 1 KLDPGSEETQTLVR LSPDWQVDYESYTWRKLDPGSEETQTLVRE RKLDPGSEETQTLVREYFSWEGAFQHVGKA R K L V R E 0 1 0 1 0 1 2 1 0 0 2 1 0 0 1 1 2 0 0 1 0 0 14 1 1571.8155 Q53YD7;P26641;B4DUP0 Q53YD7 401 414 EEF1G Elongation factor 1-gamma yes no 2;3 5.3927E-28 188.12 6 2 0.31002 0.40764 66.627 7 Median 0.31357 0.37102 6.9492 5 0 Linear 0.9737 1.4952 1.3374 2 0 Median 149850000 108890000 40959000 132260000 100460000 31798000 17592000 8430500 9161500 6316 1299 6456 23025;23026;23027;23028;23029;23030;23031;23032 34813;34814;34815;34816;34817;34818;34819;34820;34821;34822 34814 10 KLDSLTTSFGFPVGAATLVDEVGVDVAK MSEVIRILQEGVDPKKLDSLTTSFGFPVGA GAATLVDEVGVDVAKHVAEDLGKVFGERFG K K L A K H 3 0 0 3 0 0 1 3 0 0 3 2 0 2 1 2 3 0 0 5 0 0 28 1 2835.4906 B4DDZ5;H0YFD6;E9KL44;P40939;B4DRH6 E9KL44 570 597 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase no no 3 9.0897E-22 100.86 3 0.69243 0.86272 24.896 2 Median 0.69243 0.86272 24.896 2 0 Median NaN NaN NaN 0 0 Median 20258000 13467000 6790600 20258000 13467000 6790600 0 0 0 6317 1020;797 6457 23033;23034;23035 34823;34824;34825;34826 34824 3 KLDYGQHVVAGTPGR CHACIGGTNVGEDIRKLDYGQHVVAGTPGR KLDYGQHVVAGTPGRVFDMIRRRSLRTRAI R K L G R V 1 1 0 1 0 1 0 3 1 0 1 1 0 0 1 0 1 0 1 2 0 0 15 1 1596.8372 A0A024R8W0;P38919 A0A024R8W0 152 166 DDX48;EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 3 4.4498E-11 103.13 3 1 0.48957 0.63824 16.242 3 Plateau 0.48957 0.63824 16.242 3 0 Plateau NaN NaN NaN 0 0 Median 57400000 34561000 22839000 55178000 34561000 20617000 2221500 0 2221500 6318 206 6458 23036;23037;23038;23039 34827;34828;34829;34830;34831 34829 5 KLEAAEDIAYQLSR ANSLATAGDGLIELRKLEAAEDIAYQLSRS RKLEAAEDIAYQLSRSRNITYLPAGQSVLL R K L S R S 3 1 0 1 0 1 2 0 0 1 2 1 0 0 0 1 0 0 1 0 0 0 14 1 1605.8362 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0 Q6PUJ7 240 253 HEL-S-54e;PHB Prohibitin yes no 2;3 6.6063E-22 141.38 6 3 0.60774 0.80659 77.107 8 Median 0.5667 0.74949 5.4257 5 0 Median 1.7921 3.0366 21.547 3 0 Median 627920000 436350000 191570000 560970000 411680000 149280000 66952000 24670000 42282000 6319 600 6459 23040;23041;23042;23043;23044;23045;23046;23047;23048 34832;34833;34834;34835;34836;34837;34838;34839;34840;34841;34842;34843;34844;34845 34838 14 KLEAGIR PHASIMFCTVGVLLRKLEAGIRGISHVIVD CTVGVLLRKLEAGIRGISHVIVDEIHERDI R K L I R G 1 1 0 0 0 0 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 7 1 785.47594 Q08211;Q58F26;Q6PJK6 Q08211 497 503 DHX9 ATP-dependent RNA helicase A yes no 2 0.012185 114.19 1 1 0.57646 0.84639 15.418 2 Median 0.71511 0.94389 NaN 1 0 Median 0.4647 0.75897 NaN 1 0 Median 104880000 62893000 41985000 86241000 50300000 35942000 18637000 12594000 6043300 6320 1448 6460 23049;23050 34846;34847 34846 2 KLEAQETLNEEDK KITELLNKTDNRPLKKLEAQETLNEEDKAK LKKLEAQETLNEEDKAKIAKSKKKMRQKVQ K K L D K A 1 0 1 1 0 1 4 0 0 0 2 2 0 0 0 0 1 0 0 0 0 0 13 1 1545.7522 J3QK86;J3KPG5;F8VU39;Q9UIF9;H0YII3 J3QK86 663 675 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2;3 1.3596E-41 265.75 7 4 0.80867 1.0442 21.662 11 Median 0.78599 0.96581 10.398 7 0 Median 0.96231 1.5442 9.2291 4 0 Linear 119510000 67879000 51635000 65178000 38213000 26965000 54336000 29666000 24670000 6321 1062 6461 23051;23052;23053;23054;23055;23056;23057;23058;23059;23060;23061 34848;34849;34850;34851;34852;34853;34854;34855;34856;34857;34858;34859;34860;34861;34862;34863;34864 34849 17 KLEDQLQGGQLEEVILQAEHELNLAR TNEKLAMVKAEPDVKKLEDQLQGGQLEEVI EEVILQAEHELNLARKMREWKLWEPLVEEP K K L A R K 2 1 1 1 0 4 5 2 1 1 6 1 0 0 0 0 0 0 0 1 0 0 26 1 2972.5567 A0A087X1G1;H7BYD0;A0A024R745;Q16718;A0A024R772;A0A087WXR5 A0A087X1G1 52 77 NDUFA5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 yes no 4 0.012855 17.794 1 0.28509 0.37099 NaN 1 Median 0.28509 0.37099 NaN 1 0 Median NaN NaN NaN 0 0 Median 12566000 9864500 2701400 12566000 9864500 2701400 0 0 0 6322 168 6462 23062 34865;34866 34866 2 KLEEEQIILEDQNCK QKLQLEKVTTEAKLKKLEEEQIILEDQNCK KLEEEQIILEDQNCKLAKEKKLLEDRIAEF K K L C K L 0 0 1 1 1 2 4 0 0 2 2 2 0 0 0 0 0 0 0 0 0 0 15 1 1887.9248 A0A024R1N1;P35579;Q86XU5;Q99529;A0A0U4BW16 A0A024R1N1 975 989 MYH9 Myosin-9 no no 2;3 5.1446E-51 225.29 7 2 0.98907 1.2099 52.539 8 Median 0.98005 1.2029 7.0506 7 0 Median 3.2973 5.0996 NaN 1 0 Median 368760000 176140000 192620000 355600000 174310000 181290000 13164000 1830000 11334000 6323 61;490 6463 23063;23064;23065;23066;23067;23068;23069;23070;23071 34867;34868;34869;34870;34871;34872;34873;34874;34875;34876;34877;34878;34879;34880;34881;34882;34883;34884;34885 34868 19 KLEELEK EGHNIADYIDPAIMKKLEELEKEEELRTAA YIDPAIMKKLEELEKEEELRTAAGEYDSVS K K L E K E 0 0 0 0 0 0 3 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 7 1 887.4964 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;B4DHR2 Q53GS0 449 455 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.013362 99.442 1 1 0.60925 0.97393 NaN 1 Median NaN NaN NaN 0 0 Median 0.60925 0.97393 NaN 1 0 Median 64573000 47285000 17288000 21045000 21045000 0 43528000 26240000 17288000 6324 975 6464 23072;23073 34886;34887;34888 34886 3 KLEELEKEEELR EGHNIADYIDPAIMKKLEELEKEEELRTAA IMKKLEELEKEEELRTAAGEYDSVSESEDE K K L L R T 0 1 0 0 0 0 6 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 12 2 1543.8094 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;B4DHR2 Q53GS0 449 460 GTPBP4 Nucleolar GTP-binding protein 1 yes no 3 2.9449E-13 132.86 4 2 0.70989 0.98383 10.206 6 Median 0.7336 0.89709 10.117 4 0 Median 0.59951 1.0426 0.61579 2 0 Median 327870000 181730000 146140000 301750000 165680000 136070000 26116000 16048000 10068000 6325 975 6465 23074;23075;23076;23077;23078;23079 34889;34890;34891;34892;34893;34894;34895;34896;34897;34898;34899 34893 11 KLEELELDEQQK TSEGASEANLVDLQKKLEELELDEQQKKRL LQKKLEELELDEQQKKRLEAFLTQKAKVGE K K L Q K K 0 0 0 1 0 2 4 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 12 1 1500.7672 P36507;A0A1B0GUL7 P36507 40 51 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 yes no 2 3.7196E-06 140.63 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6677700 1873500 4804100 1873500 1873500 0 4804100 0 4804100 6326 1324 6466 23080;23081;23082 34900;34901;34902 34900 3 KLEELELDEQQRK ______________________________ QKKLEELELDEQQRKRLEAFLTQKQKVGEL K K L R K R 0 1 0 1 0 2 4 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 13 2 1656.8683 B4DFY5;A4QPA9;Q02750 B4DFY5 14 26 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 yes no 3 0.017936 61.03 1 0.21511 0.26264 NaN 1 Median 0.21511 0.26264 NaN 1 0 Median NaN NaN NaN 0 0 Median 1917300 1523600 393770 1917300 1523600 393770 0 0 0 6327 558 6467 23083 34903 34903 1 KLEGDSTDLSDQIAELQAQIAELK RREEKQRQELEKTRRKLEGDSTDLSDQIAE SDQIAELQAQIAELKMQLAKKEEELQAALA R K L L K M 3 0 0 3 0 3 3 1 0 2 4 2 0 0 0 2 1 0 0 0 0 0 24 1 2614.3338 A0A024R1N1;P35579;Q86XU5;Q99529;A0A0U4BW16 A0A024R1N1 1052 1075 MYH9 Myosin-9 no no 3 3.3629E-58 188.48 4 1.0253 1.2525 3.2637 4 Median 1.0253 1.2525 3.2637 4 0 Median NaN NaN NaN 0 0 Median 123090000 59448000 63641000 123090000 59448000 63641000 0 0 0 6328 61;490 6468 23084;23085;23086;23087 34904;34905;34906;34907;34908;34909;34910;34911;34912;34913 34906 10 KLEKEEEEGISQESSEEEQ KTTTTPGRKPRGRPKKLEKEEEEGISQESS EEEEGISQESSEEEQ_______________ K K L E Q - 0 0 0 0 0 2 9 1 0 1 1 2 0 0 0 3 0 0 0 0 0 0 19 2 2235.9867 Q5T6U8;Q6ZP45;P17096 P17096 89 107 HMGA1 High mobility group protein HMG-I/HMG-Y no no 2;3 6.6753E-65 220.46 9 2 0.87426 1.0655 32.358 11 Median 0.94919 1.1621 16.663 9 0 Median 0.36764 0.56195 6.3293 2 0 Median 652880000 343020000 309860000 641420000 334690000 306730000 11459000 8326100 3133200 6329 1275;1570 6469 23088;23089;23090;23091;23092;23093;23094;23095;23096;23097;23098 34914;34915;34916;34917;34918;34919;34920;34921;34922;34923;34924;34925;34926;34927;34928;34929;34930;34931;34932 34924 19 KLELSDNIISGGLEVLAEK ELSSLARLPSLNKLRKLELSDNIISGGLEV SDNIISGGLEVLAEKCPNLTYLNLSGNKIK R K L E K C 1 0 1 1 0 0 3 2 0 2 4 2 0 0 0 2 0 0 0 1 0 0 19 1 2027.115 Q53F20;Q9BTT0;Q5TB19;B4E0D5;E9PLC4 Q53F20 68 86 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 2;3 8.9312E-24 131.3 6 0.50442 0.62818 16.716 3 Median 0.50442 0.62818 16.716 3 0 Median NaN NaN NaN 0 0 Median 40703000 28592000 12110000 40703000 28592000 12110000 0 0 0 6330 1538 6470 23099;23100;23101;23102;23103;23104 34933;34934;34935;34936;34937;34938;34939;34940 34938 8 KLEQCNTELKK AFEKYQTLSLKQLFRKLEQCNTELKKYSHV QLFRKLEQCNTELKKYSHVNKKALDQFVNF R K L K K Y 0 0 1 0 1 1 2 0 0 0 2 3 0 0 0 0 1 0 0 0 0 0 11 2 1389.7286 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 968 978 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 3 8.5727E-05 128.08 3 0.46316 0.53557 19.719 2 Median 0.46316 0.53557 19.719 2 0 Median NaN NaN NaN 0 0 Median 2665600 1680100 985490 2665600 1680100 985490 0 0 0 6331 663 6471 23105;23106;23107 34941;34942;34943 34942 3 KLERPPETPTVDPTVK EEGRPGKKLKKVKLRKLERPPETPTVDPTV LERPPETPTVDPTVKYERQPEYLDATGGTL R K L V K Y 0 1 0 1 0 0 2 0 0 0 1 2 0 0 4 0 3 0 0 2 0 0 16 2 1805.9887 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 670 685 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 3.7192E-09 112.03 4 2 0.70289 0.8762 36.272 6 Median 0.69274 0.86204 4.5482 4 0 Median 0.96882 1.7092 4.7175 2 0 Median 277130000 154890000 122240000 220120000 126870000 93254000 57009000 28025000 28985000 6332 428 6472 23108;23109;23110;23111;23112;23113 34944;34945;34946;34947;34948;34949;34950;34951;34952;34953;34954 34950 11 KLESILAQDQDLK KEIKINPEKLIDVQKKLESILAQDQDLKER QKKLESILAQDQDLKERAQRCFVSYVRSVY K K L L K E 1 0 0 2 0 2 1 0 0 1 3 2 0 0 0 1 0 0 0 0 0 0 13 1 1499.8195 Q13206;Q86VR6;E9PIF2;Q59EC7;B4DKX3 Q13206 453 465 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 2 0.00017381 75.819 2 1.0164 1.2296 6.1676 2 Median 1.0164 1.2296 6.1676 2 0 Median NaN NaN NaN 0 0 Median 8192000 3903900 4288100 8192000 3903900 4288100 0 0 0 6333 1466 6473 23114;23115 34955;34956 34956 2 KLESVAEEHEILTK ERAQSDIEHLFQHNRKLESVAEEHEILTKS RKLESVAEEHEILTKSYMELLQRNESTEKK R K L T K S 1 0 0 0 0 0 4 0 1 1 2 2 0 0 0 1 1 0 0 1 0 0 14 1 1624.8672 A0A087X211;Q8TCG1 A0A087X211 717 730 KIAA1524 Protein CIP2A yes no 3 0.0030181 88.78 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6334 375 6474 23116;23117 34957;34958 34958 2 KLETAVNLAWTAGNSNTR DGTEFGGSIYQKVNKKLETAVNLAWTAGNS TAVNLAWTAGNSNTRFGIAAKYQIDPDACF K K L T R F 3 1 3 0 0 0 1 1 0 0 2 1 0 0 0 1 3 1 0 1 0 0 18 1 1945.0017 A0A1L1UHR1;P21796;B3KTS5 A0A1L1UHR1 201 218 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 3 1.378E-05 43.946 2 2.5689 4.221 5.5753 2 Median NaN NaN NaN 0 0 Median 2.5689 4.221 5.5753 2 0 Median 36528000 10897000 25630000 0 0 0 36528000 10897000 25630000 6335 524 6475 23118;23119 34959;34960;34961;34962 34960 4 KLETEETVPETDVETK MEKFTDADKETEIVKKLETEETVPETDVET LETEETVPETDVETKKPEVASWVHFDNLKG K K L T K K 0 0 0 1 0 0 5 0 0 0 1 2 0 0 1 0 4 0 0 2 0 0 16 1 1846.9048 B2R5U7;Q03701 B2R5U7 659 674 CEBPZ CCAAT/enhancer-binding protein zeta no no 2;3 7.0324E-32 186.29 6 3 0.62797 0.94944 6.826 5 Median 0.78978 0.97131 12.807 2 0 Median 0.58779 0.94944 3.1313 3 0 Median 145580000 89816000 55769000 83150000 49519000 33631000 62435000 40297000 22138000 6336 693;1441 6476 23120;23121;23122;23123;23124;23125;23126;23127;23128 34963;34964;34965;34966;34967;34968;34969;34970;34971;34972 34964 10 KLEVEANNAFDQYR DPPLEDGAMPSARLRKLEVEANNAFDQYRD RKLEVEANNAFDQYRDLYFEGGVSSVYLWD R K L Y R D 2 1 2 1 0 1 2 0 0 0 1 1 0 1 0 0 0 0 1 1 0 0 14 1 1695.8216 B1AK87;B2R7T8;B1AK88;B4DWA6;P47756;B1AK85 B1AK87 83 96 CAPZB F-actin-capping protein subunit beta yes no 3 2.4119E-05 82.651 3 0.79592 1.069 9.4361 3 Median 0.79592 1.069 9.4361 3 0 Median NaN NaN NaN 0 0 Median 21826000 12128000 9697900 21826000 12128000 9697900 0 0 0 6337 672 6477 23129;23130;23131 34973;34974;34975;34976 34973 4 KLEVNEAELLR KLGKAHATTSNTVIKKLEVNEAELLRRRNF TVIKKLEVNEAELLRRRNFKVMIYQDEVKL K K L L R R 1 1 1 0 0 0 3 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 11 1 1312.7351 B4DPZ5;B4DNU9;Q6NZI2;B3KRY5 B4DPZ5 110 120 PTRF Polymerase I and transcript release factor yes no 2;3 0.0001476 98.943 4 2 0.84718 1.1191 36.375 6 Median 0.82429 1.0805 6.2603 4 0 Median 1.2962 2.1425 2.0505 2 0 Median 125900000 63449000 62448000 87780000 47782000 39998000 38116000 15666000 22450000 6338 842 6478 23132;23133;23134;23135;23136;23137 34977;34978;34979;34980;34981;34982 34982 6 KLFNLSK TVPRRLGPKRASRIRKLFNLSKEDDVRQYV PKRASRIRKLFNLSKEDDVRQYVVRKPLNK R K L S K E 0 0 1 0 0 0 0 0 0 0 2 2 0 1 0 1 0 0 0 0 0 0 7 1 848.51199 Q96DV6;A2A3R6;P62753;A2A3R5 Q96DV6 143 149 RPS6 40S ribosomal protein S6 yes no 2 0.012233 116.9 2 1.0347 1.2685 7.0692 2 Median 1.0347 1.2685 7.0692 2 0 Median NaN NaN NaN 0 0 Median 325850000 162390000 163460000 325850000 162390000 163460000 0 0 0 6339 535 6479 23138;23139 34983;34984;34985 34985 3 KLFNLSKEDDVR TVPRRLGPKRASRIRKLFNLSKEDDVRQYV RIRKLFNLSKEDDVRQYVVRKPLNKEGKKP R K L V R Q 0 1 1 2 0 0 1 0 0 0 2 2 0 1 0 1 0 0 0 1 0 0 12 2 1462.778 Q96DV6;A2A3R6;P62753;A2A3R5 Q96DV6 143 154 RPS6 40S ribosomal protein S6 yes no 3 0.00021447 132.56 4 1.0508 1.2524 11.293 4 Median 1.0508 1.2524 11.293 4 0 Median NaN NaN NaN 0 0 Median 76346000 36833000 39513000 76346000 36833000 39513000 0 0 0 6340 535 6480 23140;23141;23142;23143 34986;34987;34988;34989;34990;34991;34992;34993 34990 8 KLGAGEGGEASVSPEK GDQPAARTPRSKKKKKLGAGEGGEASVSPE LGAGEGGEASVSPEKTSTTSKGKAKRDKAS K K L E K T 2 0 0 0 0 0 3 4 0 0 1 2 0 0 1 2 0 0 0 1 0 0 16 1 1514.7577 E7ETY2;B4DRA2;Q9UFD4;J3KQ96;Q13428 E7ETY2 1366 1381 TCOF1;DKFZp434G1035 Treacle protein no no 2 0.0051334 38.799 2 0.39963 0.54807 25.511 2 Median NaN NaN NaN 0 0 Median 0.39963 0.54807 25.511 2 0 Median 3695400 2715600 979770 0 0 0 3695400 2715600 979770 6341 1016;1135;1469 6481 23144;23145 34994;34995 34995 2 KLGALTAEEIALK DVASIKEKVKKAKNKKLGALTAEEIALKME NKKLGALTAEEIALKMEADEKKKKKKK___ K K L L K M 3 0 0 0 0 0 2 1 0 1 3 2 0 0 0 0 1 0 0 0 0 0 13 1 1355.8024 Q13601 Q13601 357 369 KRR1 KRR1 small subunit processome component homolog yes yes 2;3 8.9446E-08 140.45 5 3 0.88921 1.1858 6.3383 7 Median 0.93848 1.156 5.7195 4 0 Median 0.73915 1.1858 7.4629 3 0 Median 107550000 56070000 51481000 64906000 32197000 32709000 42645000 23873000 18772000 6342 1473 6482 23146;23147;23148;23149;23150;23151;23152;23153 34996;34997;34998;34999;35000;35001;35002;35003;35004;35005;35006;35007 34997 12 KLGGTIDDCELVEGLVLTQK ATATSVDLRDIKIVKKLGGTIDDCELVEGL IDDCELVEGLVLTQKVSNSGITRVEKAKIG K K L Q K V 0 0 0 2 1 1 2 3 0 1 4 2 0 0 0 0 2 0 0 2 0 0 20 1 2187.1457 B7Z9L0;B7Z2Z8;A8K3C3;P50991;B7Z2F4 B7Z9L0 157 176 CCT4 T-complex protein 1 subunit delta yes no 3 0.022419 51.688 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2007600 2007600 0 2007600 2007600 0 0 0 0 6343 593 6483 23154 35008 35008 1 KLGNNCVFAPADVTSEK VLLDLPNSGGEAQAKKLGNNCVFAPADVTS GNNCVFAPADVTSEKDVQTALALAKGKFGR K K L E K D 2 0 2 1 1 0 1 1 0 0 1 2 0 1 1 1 1 0 0 2 0 0 17 1 1848.904 A0A0S2Z410;Q99714;Q5H928;A0A0S2Z434 A0A0S2Z410 53 69 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 3 0.00010475 66.893 2 0.26944 0.33561 NaN 1 Median 0.26944 0.33561 NaN 1 0 Median NaN NaN NaN 0 0 Median 18800000 14324000 4475600 18800000 14324000 4475600 0 0 0 6344 458 6484 23155;23156 35009;35010;35011;35012;35013 35011 5 KLIYFQLHR WALESDNNTALLLSKKLIYFQLHRALKMIV ALLLSKKLIYFQLHRALKMIVDPVEPHGEM K K L H R A 0 1 0 0 0 1 0 0 1 1 2 1 0 1 0 0 0 0 1 0 0 0 9 1 1216.7081 B2R8R5;Q13263 B2R8R5 366 374 TRIM28 Transcription intermediary factor 1-beta yes no 3 2.2528E-10 133.23 5 0.32912 0.42461 7.3365 2 Median 0.32912 0.42461 7.3365 2 0 Median NaN NaN NaN 0 0 Median 44963000 35393000 9569500 44963000 35393000 9569500 0 0 0 6345 716 6485 23157;23158;23159;23160;23161 35014;35015;35016;35017;35018 35015 5 KLLADQAEAR LMEHIHKLKADKARKKLLADQAEARRSKTK DKARKKLLADQAEARRSKTKEARKRREERL K K L A R R 3 1 0 1 0 1 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 10 1 1113.6142 J3QR09;J3KTE4;Q53G49;P84098;Q8IWR8 J3QR09 150 159 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 2;3 0.0021959 98.048 5 1 0.56051 0.79795 39.025 2 Median 0.80819 1.0515 NaN 1 0 Median 0.38873 0.60553 NaN 1 0 Median 39302000 20169000 19133000 33384000 15923000 17461000 5918200 4246100 1672100 6346 1138 6486 23162;23163;23164;23165;23166;23167 35019;35020;35021;35022;35023;35024;35025 35021 7 KLLGLPEDYLYGQTTTYLTYNDFINK RKEWLTNFMEDRRQRKLLGLPEDYLYGQTT GQTTTYLTYNDFINKELILFSNSDNERSIP R K L N K E 0 0 2 2 0 1 1 2 0 1 5 2 0 1 1 0 4 0 4 0 0 0 26 1 3082.5539 P11388 P11388 676 701 TOP2A DNA topoisomerase 2-alpha yes yes 3 0.044886 38.843 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1791600 0 1791600 1791600 0 1791600 0 0 0 6347 1256 6487 23168 35026 35026 1 KLNEQVTQEQPLK QGFVQVTEICDAYTKKLNEQVTQEQPLKDL TKKLNEQVTQEQPLKDLLHLPELFSPGMLV K K L L K D 0 0 1 0 0 3 2 0 0 0 2 2 0 0 1 0 1 0 0 1 0 0 13 1 1553.8413 Q14690;B4DH82;B4DES7 Q14690 122 134 PDCD11 Protein RRP5 homolog yes no 2;3 8.9632E-26 202.18 6 4 0.74008 0.99585 14.747 9 Median 0.99037 1.2059 18.344 5 0 Median 0.64391 0.98874 9.7873 4 0 Median 91223000 51094000 40130000 64142000 35716000 28425000 27081000 15377000 11704000 6348 1494 6488 23169;23170;23171;23172;23173;23174;23175;23176;23177;23178 35027;35028;35029;35030;35031;35032;35033;35034;35035;35036;35037;35038;35039;35040;35041;35042;35043;35044 35027 18 KLNYEENKEESLLEK EAVKRLKEKLEAEMKKLNYEENKEESLLEK KLNYEENKEESLLEKRRQLSRDIGRLKETY K K L E K R 0 0 2 0 0 0 5 0 0 0 3 3 0 0 0 1 0 0 1 0 0 0 15 2 1864.9418 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 467 481 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 3 1.4311E-55 188.27 4 0.71022 0.80765 4.4415 4 Linear 0.71022 0.80765 4.4415 4 0 Linear NaN NaN NaN 0 0 Median 520260000 304460000 215810000 520260000 304460000 215810000 0 0 0 6349 50 6489 23179;23180;23181;23182 35045;35046;35047;35048;35049;35050;35051;35052 35052 8 KLPAIALDLLR VNVLKMAASSVKKDRKLPAIALDLLRLALK KKDRKLPAIALDLLRLALKEDKFPRFWKEV R K L L R L 2 1 0 1 0 0 0 0 0 1 4 1 0 0 1 0 0 0 0 0 0 0 11 1 1221.7809 Q9BQG0;I3L1L3;B4DZZ1 Q9BQG0 263 273 MYBBP1A Myb-binding protein 1A yes no 3 0.0080563 38.238 1 1 0.75202 1.0485 34.175 2 Median 0.64072 0.82345 NaN 1 0 Median 0.88266 1.3352 NaN 1 0 Median 11497000 6637300 4859600 5894600 3761300 2133300 5602300 2876000 2726300 6350 1708 6490 23183;23184 35053;35054;35055 35054 3 KLPFQR REIRRYQKSTELLIRKLPFQRLVREIAQDF QKSTELLIRKLPFQRLVREIAQDFKTDLRF R K L Q R L 0 1 0 0 0 1 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 6 1 787.47046 B2R4P9;P84243;B4E380;K7EK07;Q16695;Q6NXT2;B2R6Y1;A8K4Y7;K7EMV3;B4DEB1;K7ES00;K7EP01;Q6TXQ4;P68431;Q5TEC6;Q71DI3 B2R4P9 65 70 H3F3A;H3F3B;HIST3H3;H3F3C;HIST1H3A;HIST2H3PS2;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.3C;Histone H3.1;Histone H3.2 no no 2 2.8321E-07 116.12 10 0.67325 0.88896 0.19812 2 Median 0.67325 0.88896 0.19812 2 0 Median NaN NaN NaN 0 0 Median 7781100000 7491600000 289540000 7781100000 7491600000 289540000 0 0 0 6351 685;1424;1605;1577 6491 23185;23186;23187;23188;23189;23190;23191;23192;23193;23194 35056;35057;35058;35059;35060;35061;35062;35063;35064;35065 35059 10 KLPIDVTEGEVISLGLPFGK DSRSAGVPSRVIHIRKLPIDVTEGEVISLG VTEGEVISLGLPFGKVTNLLMLKGKNQAFI R K L G K V 0 0 0 1 0 0 2 3 0 2 3 2 0 1 2 1 1 0 0 2 0 0 20 1 2111.1878 A6NLN1;A0A0U1RRM4;P26599;Q59H49;K7EKJ7;K7ELW5;K7ES59 A6NLN1 35 54 PTBP1 Polypyrimidine tract-binding protein 1 yes no 3 0.00045167 61.139 3 0.56899 0.68198 0.48057 3 Median 0.56899 0.68198 0.48057 3 0 Median NaN NaN NaN 0 0 Median 10739000 6518900 4220500 10739000 6518900 4220500 0 0 0 6352 489 6492 23195;23196;23197 35066;35067;35068;35069;35070;35071 35066 6 KLPIQEFHLSR GSPVLMRHLTASEAKKLPIQEFHLSRILQE SEAKKLPIQEFHLSRILQELGLNQEQFVDL K K L S R I 0 1 0 0 0 1 1 0 1 1 2 1 0 1 1 1 0 0 0 0 0 0 11 1 1366.7721 B4DWZ4;Q6FHX6;P39748;I3L3E9 B4DWZ4 165 175 FEN1 Flap endonuclease 1 yes no 3 0.008051 66.498 1 1 0.37171 0.501 NaN 1 Median 0.37171 0.501 NaN 1 0 Median NaN NaN NaN 0 0 Median 9757400 5581900 4175400 8383700 5581900 2801800 1373700 0 1373700 6353 867 6493 23198;23199 35072;35073;35074 35072 3 KLPQVEHVLPLLK EVFSNAIDCLSDEDKKLPQVEHVLPLLKRG DKKLPQVEHVLPLLKRGIGIHHGGLLPILK K K L L K R 0 0 0 0 0 1 1 0 1 0 4 2 0 0 2 0 0 0 0 2 0 0 13 1 1512.9392 P42285;A8K6I4;B4E3M6 P42285 437 449 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 3 8.7181E-09 100.22 1 0.83091 1.0349 NaN 1 Median 0.83091 1.0349 NaN 1 0 Median NaN NaN NaN 0 0 Median 8542600 3974500 4568100 8542600 3974500 4568100 0 0 0 6354 1336 6494 23200 35075;35076;35077 35076 3 KLQDLAGGIFPEDEIPEK STPSQNRKRLYKVIRKLQDLAGGIFPEDEI DLAGGIFPEDEIPEKACRRLLEGRRQKKTK R K L E K A 1 0 0 2 0 1 3 2 0 2 2 2 0 1 2 0 0 0 0 0 0 0 18 1 1998.031 Q6PJJ2;P56182;B4DZM3;Q53FR7;Q96J73 Q6PJJ2 335 352 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 3 0.00093718 66.261 4 2 0.77585 0.95542 7.1067 6 Median 0.81421 1.0019 5.4186 4 0 Median 0.56399 0.89726 3.5964 2 0 Median 123930000 70033000 53901000 92113000 51755000 40358000 31821000 18278000 13542000 6355 1381 6495 23201;23202;23203;23204;23205;23206 35078;35079;35080;35081;35082;35083;35084;35085;35086;35087;35088;35089;35090 35079 13 KLQEVDSLWK ETSVGYAIFKVLNEKKLQEVDSLWKEFETP VLNEKKLQEVDSLWKEFETPEKANKIVKLK K K L W K E 0 0 0 1 0 1 1 0 0 0 2 2 0 0 0 1 0 1 0 1 0 0 10 1 1244.6765 Q9Y2X3;B4DUY3;F8WED0 Q9Y2X3 21 30 NOP58 Nucleolar protein 58 yes no 2 2.5491E-05 106.4 2 0.38956 0.62499 8.927 2 Median NaN NaN NaN 0 0 Median 0.38956 0.62499 8.927 2 0 Median 52266000 37657000 14609000 0 0 0 52266000 37657000 14609000 6356 1810 6496 23207;23208 35091;35092 35091 2 KLQLSLADFR RGSATNYITRNKARKKLQLSLADFRRLCIL NKARKKLQLSLADFRRLCILKGIYPHEPKH K K L F R R 1 1 0 1 0 1 0 0 0 0 3 1 0 1 0 1 0 0 0 0 0 0 10 1 1189.6819 B5MCF9;B2RDF2;O00541 B5MCF9 26 35 PES1 Pescadillo homolog yes no 2;3 9.0366E-06 112.71 4 1 0.68609 0.91551 1.265 4 Median 0.7067 0.91903 1.438 3 0 Plateau 0.60585 0.912 NaN 1 0 Median 45819000 29192000 16627000 37482000 24479000 13003000 8337100 4713100 3624000 6357 735 6497 23209;23210;23211;23212;23213 35093;35094;35095;35096;35097;35098;35099 35096 6 KLQLSLADFRR RGSATNYITRNKARKKLQLSLADFRRLCIL KARKKLQLSLADFRRLCILKGIYPHEPKHK K K L R R L 1 2 0 1 0 1 0 0 0 0 3 1 0 1 0 1 0 0 0 0 0 0 11 2 1345.783 B5MCF9;B2RDF2;O00541 B5MCF9 26 36 PES1 Pescadillo homolog yes no 3 0.00011507 85.813 1 1.1503 1.4106 NaN 1 Median 1.1503 1.4106 NaN 1 0 Median NaN NaN NaN 0 0 Median 24163000 10521000 13642000 24163000 10521000 13642000 0 0 0 6358 735 6498 23214 35100;35101 35101 2 KLSEEEILENPDLFLTSEATDYGR EALHLIDEMDLNGDKKLSEEEILENPDLFL NPDLFLTSEATDYGRQLHDDYFYHDEL___ K K L G R Q 1 1 1 2 0 0 5 1 0 1 4 1 0 1 1 2 2 0 1 0 0 0 24 1 2768.3392 Q14257;A8MXP8 Q14257 282 305 RCN2 Reticulocalbin-2 yes no 3 2.8535E-31 147.08 4 1.4689 1.9407 5.8182 4 Median 1.4689 1.9407 5.8182 4 0 Median NaN NaN NaN 0 0 Median 110790000 46021000 64771000 110790000 46021000 64771000 0 0 0 6359 1484 6499 23215;23216;23217;23218 35102;35103;35104;35105;35106;35107;35108;35109 35105 8 KLSGLNAFDIAEELVK PQKAVDQPRQLFWEKKLSGLNAFDIAEELV LSGLNAFDIAEELVKTMDLPKGLQGVGPGC K K L V K T 2 0 1 1 0 0 2 1 0 1 3 2 0 1 0 1 0 0 0 1 0 0 16 1 1745.9564 O95983;B3KMA8;K7EIE8;A0A087WT34;A0A087X1H1;A0A0A0MTS6 O95983 142 157 MBD3 Methyl-CpG-binding domain protein 3 yes no 3 6.4666E-06 91.14 4 2 0.84594 1.1047 19.4 6 Median 0.84594 1.0321 8.3217 4 0 Median 0.87704 1.4017 22.412 2 0 Median 72957000 34038000 38919000 34222000 16725000 17497000 38735000 17313000 21422000 6360 1225 6500 23219;23220;23221;23222;23223;23224 35110;35111;35112;35113;35114;35115;35116;35117;35118;35119 35112 9 KLSLLNGGLQEEELSTSLK VIWLDSKQIRQEEMKKLSLLNGGLQEEELS LNGGLQEEELSTSLKRSVYIESRIGTSTSF K K L L K R 0 0 1 0 0 1 3 2 0 0 6 2 0 0 0 3 1 0 0 0 0 0 19 1 2058.1209 O95235 O95235 224 242 KIF20A Kinesin-like protein KIF20A yes yes 3 0.00084663 61.087 1 0.91087 1.1343 NaN 1 Median 0.91087 1.1343 NaN 1 0 Median NaN NaN NaN 0 0 Median 4065700 2013600 2052100 4065700 2013600 2052100 0 0 0 6361 1215 6501 23225 35120;35121 35120 2 KLSSETYSQAK EDVKILLTQENPFFRKLSSETYSQAKDLAK PFFRKLSSETYSQAKDLAKGSIVLKYEPDS R K L A K D 1 0 0 0 0 1 1 0 0 0 1 2 0 0 0 3 1 0 1 0 0 0 11 1 1240.6299 Q08J23 Q08J23 640 650 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 0.010254 51.092 1 0.51374 0.62138 NaN 1 Median 0.51374 0.62138 NaN 1 0 Median NaN NaN NaN 0 0 Median 5437200 4054500 1382700 5437200 4054500 1382700 0 0 0 6362 1451 6502 23226 35122 35122 1 KLSVACFYGGTPYGGQFER ELANQVSKDFSDITKKLSVACFYGGTPYGG ACFYGGTPYGGQFERMRNGIDILVGTPGRI K K L E R M 1 1 0 0 1 1 1 4 0 0 1 1 0 2 1 1 1 0 2 1 0 0 19 1 2136.0099 Q9NR30 Q9NR30 286 304 DDX21 Nucleolar RNA helicase 2 yes yes 3 0.00076035 34.793 1 0.64503 0.83907 NaN 1 Median 0.64503 0.83907 NaN 1 0 Median NaN NaN NaN 0 0 Median 13435000 8404600 5030200 13435000 8404600 5030200 0 0 0 6363 1756 6503 23227 35123;35124 35124 2 KLSVLIHNSDEHK MLFVFGYRAQKIRSKKLSVLIHNSDEHKDI SKKLSVLIHNSDEHKDIQSCTVEVHFQKII K K L H K D 0 0 1 1 0 0 1 0 2 1 2 2 0 0 0 2 0 0 0 1 0 0 13 1 1518.8154 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9J578;C9JVD8;C9JWF0;C9IYK2;C9JJ64 Q9NTJ3 141 153 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 3.1864E-09 150.51 4 0.76509 0.94015 7.6417 4 Median 0.76509 0.94015 7.6417 4 0 Median NaN NaN NaN 0 0 Median 153280000 86032000 67251000 153280000 86032000 67251000 0 0 0 6364 1760 6504 23228;23229;23230;23231 35125;35126;35127;35128 35125 4 KLTELGTVDPK LTLQEKKEKIQTGLKKLTELGTVDPKNKYQ TGLKKLTELGTVDPKNKYQELINDIARDIR K K L P K N 0 0 0 1 0 0 1 1 0 0 2 2 0 0 1 0 2 0 0 1 0 0 11 1 1199.6762 A4QPB0;A0A024RC65;P46940;H0YLE8;B4E2M0;B4DNP4 A4QPB0 1465 1475 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.014556 56.548 2 0.55352 0.66868 NaN 1 Median 0.55352 0.66868 NaN 1 0 Median NaN NaN NaN 0 0 Median 10099000 7938200 2160800 10099000 7938200 2160800 0 0 0 6365 287 6505 23232;23233 35129;35130 35130 2 KLTQTSGETTHTDKVPGGEDK PLEKRDVQKELSALKKLTQTSGETTHTDKV GETTHTDKVPGGEDKSINAFRETAKQKLDP K K L D K S 0 0 0 2 0 1 2 3 1 0 1 3 0 0 1 1 5 0 0 1 0 0 21 2 2228.0921 P46013 P46013 1409 1429 MKI67 Antigen KI-67 yes yes 2;3;4 7.8782E-166 257.75 9 1 0.96292 1.1165 11.988 10 Median 0.96403 1.0961 6.4175 9 0 Median 0.938 1.5326 NaN 1 0 Median 601990000 302950000 299040000 599530000 301460000 298070000 2458300 1480800 977460 6366 1342 6506 23234;23235;23236;23237;23238;23239;23240;23241;23242;23243 35131;35132;35133;35134;35135;35136;35137;35138;35139;35140;35141;35142;35143;35144;35145;35146;35147;35148;35149 35142 19 KLTTDPDLILEVLR QFIPIWTVANMEEIKKLTTDPDLILEVLRS KKLTTDPDLILEVLRSSPMVQVDEKGEKVR K K L L R S 0 1 0 2 0 0 1 0 0 1 4 1 0 0 1 0 2 0 0 1 0 0 14 1 1624.94 F8W1I4;Q8TBL5;A0A087WTL9;F8VY40;Q6P4E2;Q96J85;Q71RC2 F8W1I4 95 108 LARP4 La-related protein 4 yes no 3 5.7044E-05 65.805 2 2 0.58292 0.75191 NaN 1 Median 0.58292 0.75191 NaN 1 0 Median NaN NaN NaN 0 0 Median 7606600 3033100 4573500 5458100 3033100 2425000 2148500 0 2148500 6367 334 6507 23244;23245;23246;23247 35150;35151;35152;35153;35154;35155 35152 6 KLTVNPGTK YPLEIDYGQDEEAVKKLTVNPGTKSKLPKP DEEAVKKLTVNPGTKSKLPKPVQDLIKMIF K K L T K S 0 0 1 0 0 0 0 1 0 0 1 2 0 0 1 0 2 0 0 1 0 0 9 1 956.56548 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 654 662 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 6.747E-59 179.81 5 2 1.0484 1.2741 41.211 5 Median 1.0831 1.325 4.0143 3 0 Median 0.38887 0.62603 1.9271 2 0 Median 352400000 154340000 198060000 259250000 87306000 171940000 93155000 67034000 26121000 6368 107 6508 23248;23249;23250;23251;23252;23253;23254 35156;35157;35158;35159;35160;35161;35162;35163;35164;35165;35166 35161 11 KLVGSVNLFSDENVPR ELFLLAQQKVPSKLKKLVGSVNLFSDENVP LVGSVNLFSDENVPRLVNVLKMAASSVKKD K K L P R L 0 1 2 1 0 0 1 1 0 0 2 1 0 1 1 2 0 0 0 3 0 0 16 1 1772.9421 Q9BQG0;I3L1L3;B4DZZ1 Q9BQG0 231 246 MYBBP1A Myb-binding protein 1A yes no 3 4.4716E-06 51.888 2 0.55314 0.73082 16.565 2 Median 0.55314 0.73082 16.565 2 0 Median NaN NaN NaN 0 0 Median 23611000 14896000 8714700 23611000 14896000 8714700 0 0 0 6369 1708 6509 23255;23256 35167;35168 35168 2 KLVLILNK RCPQVEEAIVQSGQKKLVLILNKSDLVPKE IVQSGQKKLVLILNKSDLVPKENLESWLNY K K L N K S 0 0 1 0 0 0 0 0 0 1 3 2 0 0 0 0 0 0 0 1 0 0 8 1 939.64809 A0A024R2Z6;Q9BVP2 A0A024R2Z6 160 167 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.0025212 147.69 2 0.67585 0.83479 3.9779 2 Median 0.67585 0.83479 3.9779 2 0 Median NaN NaN NaN 0 0 Median 34800000 17840000 16960000 34800000 17840000 16960000 0 0 0 6370 95 6510 23257;23258 35169;35170 35169 1 KLYDIDVAK VDVKANKHQIKQAVKKLYDIDVAKVNTLIR IKQAVKKLYDIDVAKVNTLIRPDGEKKAYV K K L A K V 1 0 0 2 0 0 0 0 0 1 1 2 0 0 0 0 0 0 1 1 0 0 9 1 1063.5914 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7 H7BY10 117 125 RPL23A 60S ribosomal protein L23a yes no 2 2.0247E-05 135.43 4 2 0.93329 1.1271 24.632 6 Median 0.94684 1.1546 2.3152 4 0 Median 0.43871 0.71307 2.6272 2 0 Median 2960300000 1592700000 1367700000 2513400000 1286300000 1227100000 446910000 306390000 140520000 6371 658 6511 23259;23260;23261;23262;23263;23264 35171;35172;35173;35174;35175;35176;35177;35178;35179;35180;35181 35175 11 KMEDSVGCLETAEEVK KQIATLHAQVADMKKKMEDSVGCLETAEEV MEDSVGCLETAEEVKRKLQKDLEGLSQRHE K K M V K R 1 0 0 1 1 0 4 1 0 0 1 2 1 0 0 1 1 0 0 2 0 0 16 1 1823.8281 A0A024R1N1;P35579;A0A0U4BW16 A0A024R1N1 1372 1387 MYH9 Myosin-9 no no 3 2.0508E-05 70.944 2 1.0011 1.2108 NaN 1 Median 1.0011 1.2108 NaN 1 0 Median NaN NaN NaN 0 0 Median 7129200 4560100 2569100 7129200 4560100 2569100 0 0 0 6372 61;490 6512 23265;23266 35182;35183;35184;35185 35184 4 KMTEIQTPENTPR VATFIGLDKMAVWAKKMTEIQTPENTPRLF AKKMTEIQTPENTPRLFDLVKVKDEKIRQA K K M P R L 0 1 1 0 0 1 2 0 0 1 0 1 1 0 2 0 3 0 0 0 0 0 13 1 1543.7664 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 680 692 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 2.8929E-05 76.233 3 0.58386 0.92091 3.4773 3 Median NaN NaN NaN 0 0 Median 0.58386 0.92091 3.4773 3 0 Median 52436000 33599000 18838000 0 0 0 52436000 33599000 18838000 6373 1760 6513 23267;23268;23269 35186;35187;35188;35189 35189 807 4 KNEALPSAHGTPASASALPEPK VCLRTKRHKNNRVKKKNEALPSAHGTPASA AHGTPASASALPEPKVRIVEYSPPSAPRRP K K N P K V 5 0 1 0 0 0 2 1 1 0 2 2 0 0 4 3 1 0 0 0 0 0 22 1 2172.1175 Q86X06;A0A024R4V5;B4E3L9;A0A024R4W4;O95696 Q86X06 100 121 BRD1 Bromodomain-containing protein 1 yes no 3 0.00016903 39.647 1 1.0531 1.3054 NaN 1 Median 1.0531 1.3054 NaN 1 0 Median NaN NaN NaN 0 0 Median 9468900 3599400 5869500 9468900 3599400 5869500 0 0 0 6374 128 6514 23270 35190;35191 35191 2 KNGPLEVAGAAVSAGHGLPAK KGGKEFVEAVLELRKKNGPLEVAGAAVSAG VAGAAVSAGHGLPAKFVIHCNSPVWGADKC K K N A K F 5 0 1 0 0 0 1 4 1 0 2 2 0 0 2 1 0 0 0 2 0 0 21 1 1943.0589 O75367;Q59FH0;B4DJC3 O75367 251 271 H2AFY Core histone macro-H2A.1;Histone H2A yes no 3 4.1769E-89 202.21 4 2 0.78154 1.0353 12.922 6 Median 0.8309 1.0155 11.07 4 0 Median 0.72569 1.17 3.486 2 0 Median 442200000 250120000 192080000 325470000 180890000 144570000 116740000 69226000 47511000 6375 1198 6515 23271;23272;23273;23274;23275;23276 35192;35193;35194;35195;35196;35197;35198;35199 35197 8 KNILDSKPTANK HGYIPGKNRDLKVVKKNILDSKPTANKKCD VVKKNILDSKPTANKKCDLISIPKKTTDTA K K N N K K 1 0 2 1 0 0 0 0 0 1 1 3 0 0 1 1 1 0 0 0 0 0 12 2 1327.746 B4DMH3;Q53G58;B3KN06;A0A024RBI5;Q59EA2;Q9ULV4;B7Z9V0;B4E3S0;H0YHL7 B4DMH3 370 381 CORO1C Coronin;Coronin-1C yes no 3 0.0016594 95.477 1 1.5907 1.7838 NaN 1 Median 1.5907 1.7838 NaN 1 0 Median NaN NaN NaN 0 0 Median 13840000 5547100 8293300 13840000 5547100 8293300 0 0 0 6376 274 6516 23277 35200 35200 1 KNNFSDTGNFGFGIQEHIDLGIK EILEKGLKVREYELRKNNFSDTGNFGFGIQ NFGFGIQEHIDLGIKYDPSIGIYGLDFYVV R K N I K Y 0 0 3 2 0 1 1 4 1 3 1 2 0 3 0 1 1 0 0 0 0 0 23 1 2550.2503 Q5VVD0;P62913;Q5VVC8;Q08ES8;Q5VVC9 Q5VVD0 96 118 RPL11 60S ribosomal protein L11 yes no 4 9.5261E-06 73.796 1 0.68868 0.85595 NaN 1 Median 0.68868 0.85595 NaN 1 0 Median NaN NaN NaN 0 0 Median 5416900 3424600 1992300 5416900 3424600 1992300 0 0 0 6377 1416 6517 23278 35201 35201 0 KNPASLPLTQAALK SDGKKQEGPATQVSKKNPASLPLTQAALKV KKNPASLPLTQAALKVLAQKASEAQPPVAR K K N L K V 3 0 1 0 0 1 0 0 0 0 3 2 0 0 2 1 1 0 0 0 0 0 14 1 1450.8508 Q13428;Q59FZ2 Q13428 1065 1078 TCOF1 Treacle protein yes no 2;3 0.00017201 45.347 3 1.2726 1.9982 5.2298 3 Plateau NaN NaN NaN 0 0 Median 1.2726 1.9982 5.2298 3 0 Plateau 31760000 15609000 16150000 0 0 0 31760000 15609000 16150000 6378 1469 6518 23279;23280;23281 35202;35203;35204;35205;35206;35207 35203 6 KNPPSGDLLNVYELFEK YKKPLYGISHKIMEKKNPPSGDLLNVYELF PPSGDLLNVYELFEKANASNSPSSLRLLNE K K N E K A 0 0 2 1 0 0 2 1 0 0 3 2 0 1 2 1 0 0 1 1 0 0 17 1 1962.0098 Q5T5X7 Q5T5X7 142 158 BEND3 BEN domain-containing protein 3 yes yes 3 0.00041997 62.475 3 0.46176 0.55976 41.535 3 Median 0.46176 0.55976 41.535 3 0 Median NaN NaN NaN 0 0 Median 10295000 6747300 3548100 10295000 6747300 3548100 0 0 0 6379 1569 6519 23282;23283;23284 35208;35209;35210;35211 35209 4 KNPSSPLYTTLGVITK PELKATFCLPILGVKKNPSSPLYTTLGVIT NPSSPLYTTLGVITKGTVIEVNVSELGLVT K K N T K G 0 0 1 0 0 0 0 1 0 1 2 2 0 0 2 2 3 0 1 1 0 0 16 1 1717.9614 Q5J7U2;O95478 Q5J7U2 201 216 CDK105;NSA2 Ribosome biogenesis protein NSA2 homolog yes no 2;3 8.6761E-19 157.37 6 0.90551 1.0964 15.965 6 Median 0.90551 1.0964 15.965 6 0 Median NaN NaN NaN 0 0 Median 100810000 49967000 50839000 100810000 49967000 50839000 0 0 0 6380 1221 6520 23285;23286;23287;23288;23289;23290 35212;35213;35214;35215;35216;35217;35218;35219;35220 35213 9 KNQLELLR KRKFQPLFGDFAAEKKNQLELLRVMNSKKP GDFAAEKKNQLELLRVMNSKKPQLDVTRAT K K N L R V 0 1 1 0 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 1 1012.6029 Q15050 Q15050 266 273 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 0.0062009 97.798 3 0.73109 0.97214 9.1181 3 Median 0.73109 0.97214 9.1181 3 0 Median NaN NaN NaN 0 0 Median 93945000 51922000 42023000 93945000 51922000 42023000 0 0 0 6381 1503 6521 23291;23292;23293 35221;35222;35223 35223 3 KNQSFASTHLNQNSSR VQDAEEAWKLLKVGRKNQSFASTHLNQNSS NQSFASTHLNQNSSRSHSIFSIRILHLQGE R K N S R S 1 1 3 0 0 2 0 0 1 0 1 1 0 1 0 4 1 0 0 0 0 0 16 1 1817.8769 O95235 O95235 364 379 KIF20A Kinesin-like protein KIF20A yes yes 3 0.0099212 52.93 1 0.67566 0.89937 NaN 1 Median 0.67566 0.89937 NaN 1 0 Median NaN NaN NaN 0 0 Median 2068700 1264800 803870 2068700 1264800 803870 0 0 0 6382 1215 6522 23294 35224 35224 1 KNVGQFSGFPFEK HKLLYNRPGTVSSLKKNVGQFSGFPFEKGS LKKNVGQFSGFPFEKGSVQYKKKEEMLKKF K K N E K G 0 0 1 0 0 1 1 2 0 0 0 2 0 3 1 1 0 0 0 1 0 0 13 1 1483.746 P35659;B4DFG0;D6RDA2;D6R9L5 P35659 125 137 DEK Protein DEK yes no 3 0.005646 33.787 2 0.9023 1.1287 14.779 2 Median 0.9023 1.1287 14.779 2 0 Median NaN NaN NaN 0 0 Median 13907000 8082500 5824300 13907000 8082500 5824300 0 0 0 6383 1322 6523 23295;23296 35225;35226 35226 2 KNYEDEDSLK AEINNIIKIVGLQYKKNYEDEDSLKTLRYG GLQYKKNYEDEDSLKTLRYGKIMIMTDQDQ K K N L K T 0 0 1 2 0 0 2 0 0 0 1 2 0 0 0 1 0 0 1 0 0 0 10 1 1239.5619 P11388 P11388 520 529 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.00063686 88.681 2 1 0.94238 1.163 NaN 1 Median 0.94238 1.163 NaN 1 0 Median NaN NaN NaN 0 0 Median 29219000 23515000 5703800 24222000 18518000 5703800 4996900 4996900 0 6384 1256 6524 23297;23298;23299 35227;35228;35229 35227 3 KPAAATVTK ATPKKSAKKTPKKAKKPAAATVTKKVAKSP TPKKAKKPAAATVTKKVAKSPKKAKVAKPK K K P T K K 3 0 0 0 0 0 0 0 0 0 0 2 0 0 1 0 2 0 0 1 0 0 9 1 885.52837 P16403 P16403 160 168 HIST1H1C Histone H1.2 yes yes 2 0.015851 93.598 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1002000 1002000 0 1002000 1002000 0 0 0 0 6385 1274 6525 23300 35230 35230 1 KPAEEGNDSEEVPEASGPQNDGK PPQQRPYGYDQIMPKKPAEEGNDSEEVPEA SEEVPEASGPQNDGKELCPPGKPTTSEKIH K K P G K E 2 0 2 2 0 1 5 3 0 0 0 2 0 0 3 2 0 0 0 1 0 0 23 1 2383.0412 A4PIW0;A4PIV9;Q8IZH0;Q8IZG9;Q8IZG8;Q8IZG7;Q8IZG6;Q8IZG5;Q8WWZ9;Q9Y444;Q9NZK4;O75101;R9QTR3;Q16385 A4PIW0 384 406 SYT-SSX2;SS18/SSX2 fusion;SSX2;SSX-HSTT Protein SSX2 yes no 3 0.048671 8.3009 1 2.0507 2.7663 NaN 1 Median NaN NaN NaN 0 0 Median 2.0507 2.7663 NaN 1 0 Median 1188700 414460 774230 0 0 0 1188700 414460 774230 6386 557 6526 23301 35231 35231 1 KPAFNLSAFGTLSPSLGNSSILK ERSHSLSQHTATSSKKPAFNLSAFGTLSPS FGTLSPSLGNSSILKTSQLGDSPFYPGKTT K K P L K T 2 0 2 0 0 0 0 2 0 1 4 2 0 2 2 5 1 0 0 0 0 0 23 1 2348.274 A0A024QZW7;P49790 A0A024QZW7 228 250 NUP153 Nuclear pore complex protein Nup153 yes no 3 0.030025 31.38 1 0.68951 0.85269 NaN 1 Median 0.68951 0.85269 NaN 1 0 Median NaN NaN NaN 0 0 Median 2028400 1243400 785100 2028400 1243400 785100 0 0 0 6387 22 6527 23302 35232 35232 1 KPALELLHYLK VMQVKTFSEACLMVRKPALELLHYLKNTSF LMVRKPALELLHYLKNTSFAYPAIRYLLYG R K P L K N 1 0 0 0 0 0 1 0 1 0 4 2 0 0 1 0 0 0 1 0 0 0 11 1 1323.7915 P51398;V9GZ03;V9GYL9 P51398 103 113 DAP3 28S ribosomal protein S29, mitochondrial yes no 3 0.031549 49.28 1 0.56782 0.70253 NaN 1 Median 0.56782 0.70253 NaN 1 0 Median NaN NaN NaN 0 0 Median 6930000 4725100 2204900 6930000 4725100 2204900 0 0 0 6388 1361 6528 23303 35233 35233 1 KPALPLK FIKHVPPLTEEQLNRKPALPLKTRSTPEFS LTEEQLNRKPALPLKTRSTPEFSLVLDLDE R K P L K T 1 0 0 0 0 0 0 0 0 0 2 2 0 0 2 0 0 0 0 0 0 0 7 1 765.51126 A0A024R5Q8;Q05D32;H0YMB4 A0A024R5Q8 275 281 CTDSPL2 CTD small phosphatase-like protein 2 yes no 2 0.01808 90.986 1 0.68561 0.848 NaN 1 Median 0.68561 0.848 NaN 1 0 Median NaN NaN NaN 0 0 Median 11279000 6833000 4445900 11279000 6833000 4445900 0 0 0 6389 149 6529 23304 35234;35235 35235 2 KPALQSSVVATSK RESRQESDPEDDDVKKPALQSSVVATSKER VKKPALQSSVVATSKERTRRDLIQDQNMDE K K P S K E 2 0 0 0 0 1 0 0 0 0 1 2 0 0 1 3 1 0 0 2 0 0 13 1 1314.7507 A8K964;Q9H307 A8K964 109 121 PNN Pinin yes no 2 1.9292E-12 124.12 2 0.43984 0.54071 NaN 1 Median 0.43984 0.54071 NaN 1 0 Median NaN NaN NaN 0 0 Median 10185000 7459700 2725100 10185000 7459700 2725100 0 0 0 6390 644 6530 23305;23306 35236;35237 35237 2 KPALVSTVEGGQDPK VLCLSQSEGRVLLCRKPALVSTVEGGQDPK KPALVSTVEGGQDPKNFSEIHPGMLLIGFV R K P P K N 1 0 0 1 0 1 1 2 0 0 1 2 0 0 2 1 1 0 0 2 0 0 15 1 1524.8148 Q14690;B4DH82;B4DES7 Q14690 707 721 PDCD11 Protein RRP5 homolog yes no 2;3 1.9003E-27 180.95 5 1 0.90055 1.147 10.983 6 Median 0.95933 1.1848 12.148 5 0 Median 0.72947 1.1105 NaN 1 0 Median 65855000 31006000 34849000 59998000 27509000 32489000 5857500 3497600 2359900 6391 1494 6531 23307;23308;23309;23310;23311;23312 35238;35239;35240;35241;35242;35243;35244;35245;35246;35247;35248;35249 35240 12 KPANDITSQLEINFGDLGR EEAHAEDSVMDHHFRKPANDITSQLEINFG DITSQLEINFGDLGRPGRGGRGGRGGRGRG R K P G R P 1 1 2 2 0 1 1 2 0 2 2 1 0 1 1 1 1 0 0 0 0 0 19 1 2087.0647 Q63HR1;Q5VU21;D3DQ69;Q8NC51;D3DQ70 Q63HR1 325 343 DKFZp686P17171;SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 3 8.8602E-05 61.862 2 0.84551 1.0961 NaN 1 Median 0.84551 1.0961 NaN 1 0 Median NaN NaN NaN 0 0 Median 9819200 5044800 4774400 9819200 5044800 4774400 0 0 0 6392 1578 6532 23313;23314 35250;35251;35252 35251 3 KPAPPPAPPQATK EPAPPPGKAGEKSVKKPAPPPAPPQATKTT VKKPAPPPAPPQATKTTAPVPEPTKPGDPR K K P T K T 3 0 0 0 0 1 0 0 0 0 0 2 0 0 6 0 1 0 0 0 0 0 13 1 1298.7347 E7ERS3;B4DTK7;Q86VM9;H3BRN6 E7ERS3 663 675 ZC3H18 Zinc finger CCCH domain-containing protein 18 yes no 2 0.0050576 113.38 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 813720 813720 0 813720 813720 0 0 0 0 6393 859 6533 23315 35253 35253 1 KPAPSNEPEYLCK SKSTLGQTDFPAHSRKPAPSNEPEYLCKWM SRKPAPSNEPEYLCKWMGLPYSECSWEDEA R K P C K W 1 0 1 0 1 0 2 0 0 0 1 2 0 0 3 1 0 0 1 0 0 0 13 1 1531.7341 A0A024RC75;O14647;A0A1B0GTU9;A8K9Y5;Q8N677;B7Z3I4;Q3YLD6;A0A0D9SGK0;A0A0D9SFV8;Q3YLD5;A0A0D9SFA3 A0A024RC75 404 416 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 3 0.00010326 101.38 2 0.91096 1.0995 NaN 1 Median 0.91096 1.0995 NaN 1 0 Median NaN NaN NaN 0 0 Median 8739100 7045700 1693300 8739100 7045700 1693300 0 0 0 6394 289 6534 23316;23317 35254;35255 35254 2 KPDSVSLHCR DTEETPHRWWIETCKKPDSVSLHCRQEAIF IETCKKPDSVSLHCRQEAIFELLGGITSPA K K P C R Q 0 1 0 1 1 0 0 0 1 0 1 1 0 0 1 2 0 0 0 1 0 0 10 1 1197.5924 Q96F88;Q99575 Q96F88 473 482 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2;3 7.6418E-05 107.55 3 0.38073 0.49361 25.888 2 Median 0.38073 0.49361 25.888 2 0 Median NaN NaN NaN 0 0 Median 27892000 18966000 8926700 27892000 18966000 8926700 0 0 0 6395 1685 6535 23318;23319;23320 35256;35257;35258;35259 35258 4 KPEDNHTQCQLVPVVEIGISER APSSPTPESPTMLTKKPEDNHTQCQLVPVV QCQLVPVVEIGISERQNAEQHVTQLMSTEP K K P E R Q 0 1 1 1 1 2 3 1 1 2 1 1 0 0 2 1 1 0 0 3 0 0 22 1 2547.2751 Q9NQS7;B3KPD3 Q9NQS7 155 176 INCENP Inner centromere protein yes no 3;4 2.1281E-05 101.05 9 0.92333 1.2281 18.795 7 Median 0.92333 1.2281 18.795 7 0 Median NaN NaN NaN 0 0 Median 410600000 204230000 206360000 410600000 204230000 206360000 0 0 0 6396 1752 6536 23321;23322;23323;23324;23325;23326;23327;23328;23329 35260;35261;35262;35263;35264;35265;35266;35267;35268;35269;35270;35271;35272 35268 13 KPEDRPNTSEILR IISDIFDKKEKLLSKKPEDRPNTSEILRTL SKKPEDRPNTSEILRTLTVWKKSPEKNERH K K P L R T 0 2 1 1 0 0 2 0 0 1 1 1 0 0 2 1 1 0 0 0 0 0 13 2 1553.8162 B7ZKK7;P19525 B7ZKK7 517 529 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 3 0.031329 56.951 2 0.39398 0.4835 20.458 2 Median 0.39398 0.4835 20.458 2 0 Median NaN NaN NaN 0 0 Median 40877000 29609000 11268000 40877000 29609000 11268000 0 0 0 6397 923 6537 23330;23331 35273;35274 35274 2 KPEEEEEEELEETAQEK EEISSDSESESLAPRKPEEEEEEELEETAQ EEEEEEELEETAQEKKLRLAKLYLEQLRQQ R K P E K K 1 0 0 0 0 1 10 0 0 0 1 2 0 0 1 0 1 0 0 0 0 0 17 1 2074.9066 O43818 O43818 62 78 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2;3 2.5116E-113 267.5 8 4 0.80003 0.9894 12.927 12 Median 0.90577 1.105 14.4 8 0 Median 0.57268 0.922 2.2067 4 0 Median 505770000 295470000 210310000 290910000 161340000 129580000 214860000 134130000 80730000 6398 1188 6538 23332;23333;23334;23335;23336;23337;23338;23339;23340;23341;23342;23343 35275;35276;35277;35278;35279;35280;35281;35282;35283;35284;35285;35286;35287;35288;35289;35290;35291;35292;35293;35294;35295;35296;35297 35282 23 KPEEEEEEELEETAQEKK EEISSDSESESLAPRKPEEEEEEELEETAQ EEEEEELEETAQEKKLRLAKLYLEQLRQQE R K P K K L 1 0 0 0 0 1 10 0 0 0 1 3 0 0 1 0 1 0 0 0 0 0 18 2 2203.0016 O43818 O43818 62 79 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 3 0.00026962 46.494 2 1 0.67593 0.87751 11.745 3 Median 0.74521 0.85939 16.522 2 0 Median 0.49748 0.87751 NaN 1 0 Median 32109000 17299000 14810000 27929000 15108000 12820000 4180100 2190700 1989400 6399 1188 6539 23344;23345;23346 35298;35299;35300 35298 3 KPEYDLEEDDQEVLK KERAQLLVNPKKIIKKPEYDLEEDDQEVLK KPEYDLEEDDQEVLKDQNYVEIMGRDVQES K K P L K D 0 0 0 3 0 1 4 0 0 0 2 2 0 0 1 0 0 0 1 1 0 0 15 1 1848.8629 A0A024R411;Q13416;B4DYU9;C9JK08;B8ZZ80 A0A024R411 52 66 ORC2L;ORC2 Origin recognition complex subunit 2 yes no 2;3 7.5371E-20 168.89 3 0.53674 0.66648 12.515 2 Median 0.53674 0.66648 12.515 2 0 Median NaN NaN NaN 0 0 Median 16000000 10837000 5163900 16000000 10837000 5163900 0 0 0 6400 114 6540 23347;23348;23349 35301;35302;35303 35302 3 KPFGAILNLVPLAESVVK GKTVIVAALDGTFQRKPFGAILNLVPLAES GAILNLVPLAESVVKLTAVCMECFQEAAYT R K P V K L 2 0 1 0 0 0 1 1 0 1 3 2 0 1 2 1 0 0 0 3 0 0 18 1 1894.1292 B5BUF9;B5BU32;A0A024R8N6;P04183;K7ERV3;K7ES52;K7ERJ1 B5BUF9 131 148 TK1 Thymidine kinase;Thymidine kinase, cytosolic yes no 3 4.8805E-11 120.99 3 0.21241 0.26096 16.656 2 Median 0.21241 0.26096 16.656 2 0 Median NaN NaN NaN 0 0 Median 66992000 54392000 12600000 66992000 54392000 12600000 0 0 0 6401 200 6541 23350;23351;23352 35304;35305;35306;35307 35304 4 KPFPLVKPLPGEEPLFTIPHTQEAFR ______________________________ EEPLFTIPHTQEAFRTREEYEARLERYSER R K P F R T 1 1 0 0 0 1 3 1 1 1 3 2 0 3 6 0 2 0 0 1 0 0 26 2 2987.6273 Q9UIG0 Q9UIG0 8 33 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 4 2.1963E-22 98 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 104390000 0 104390000 8047500 0 8047500 96344000 0 96344000 6402 1786 6542 23353;23354;23355 35308;35309;35310;35311 35311 4 KPFSQHVR YPTEDVPRKLLSHGKKPFSQHVRKLRASIT KLLSHGKKPFSQHVRKLRASITPGTILIIL K K P V R K 0 1 0 0 0 1 0 0 1 0 0 1 0 1 1 1 0 0 0 1 0 0 8 1 997.54575 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3;F8VZ45;U3KQR5;F8VR69 Q8TBK5 131 138 RPL6 60S ribosomal protein L6 yes no 2;3 0.0022032 66.073 3 0.70924 0.93222 40.375 3 Median 0.70924 0.93222 40.375 3 0 Median NaN NaN NaN 0 0 Median 553730000 323920000 229810000 553730000 323920000 229810000 0 0 0 6403 277 6543 23356;23357;23358 35312;35313;35314;35315;35316 35314 5 KPGDLSDELR LYYEGKEFETRLKEKKPGDLSDELRISLGM RLKEKKPGDLSDELRISLGMPVGPNAHKVP K K P L R I 0 1 0 2 0 0 1 1 0 0 2 1 0 0 1 1 0 0 0 0 0 0 10 1 1128.5775 Q13435;Q7Z3K9;E9PPJ0;H0YEX5 Q13435 605 614 SF3B2;DKFZp781L0540 Splicing factor 3B subunit 2 yes no 2 0.012693 70.1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3920800 3920800 0 3920800 3920800 0 0 0 0 6404 1470 6544 23359 35317 35317 1 KPGGFDISLFYR DLRDTGIFLDLMHLKKPGGFDISLFYRDII HLKKPGGFDISLFYRDIISIAEDEDLRVHF K K P Y R D 0 1 0 1 0 0 0 2 0 1 1 1 0 2 1 1 0 0 1 0 0 0 12 1 1398.7296 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356 A0A024R1N4 207 218 XRCC6 X-ray repair cross-complementing protein 6 yes no 2;3 4.2199E-07 146.71 8 3 0.53861 0.71441 18.494 9 Median 0.53363 0.69979 8.3845 6 0 Median 0.54786 0.97302 12.89 3 0 Median 435410000 293460000 141960000 344190000 236710000 107480000 91227000 56748000 34479000 6405 62 6545 23360;23361;23362;23363;23364;23365;23366;23367;23368;23369;23370 35318;35319;35320;35321;35322;35323;35324;35325;35326;35327;35328;35329;35330;35331;35332;35333;35334;35335;35336 35323 19 KPGKEEGDPLQR PCKIEPSINHILSTRKPGKEEGDPLQRVQS STRKPGKEEGDPLQRVQSHQQASEEKKEKM R K P Q R V 0 1 0 1 0 1 2 2 0 0 1 2 0 0 2 0 0 0 0 0 0 0 12 2 1352.7048 O60566 O60566 370 381 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes yes 3 0.011937 92.781 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6406 1191 6546 23371 35337 35337 1 KPGSVVAAAAAEAK KAEADPQAIPKKRGRKPGSVVAAAAAEAKK RKPGSVVAAAAAEAKKKAVKESSIRSVQET R K P A K K 6 0 0 0 0 0 1 1 0 0 0 2 0 0 1 1 0 0 0 2 0 0 14 1 1268.7089 A0A140VKC4;D9ZNA4;D5L9I5;D3YJ43;D0UU70;A8K079;E9LUH4;P51608;E1B2J3;E9LUH3;C6KG45;D6QZ43;A0A087X1U4;C6KG44;A0A075BPP5 A0A140VKC4 283 296 MECP2 Methyl-CpG-binding protein 2 yes no 2 0.014106 37.327 1 0.52069 0.77083 NaN 1 Median NaN NaN NaN 0 0 Median 0.52069 0.77083 NaN 1 0 Median 3846600 2473000 1373600 0 0 0 3846600 2473000 1373600 6407 512 6547 23372 35338 35338 1 KPHIIIATPGR VGGIDSMSQSLALAKKPHIIIATPGRLIDH ALAKKPHIIIATPGRLIDHLENTKGFNLRA K K P G R L 1 1 0 0 0 0 0 1 1 3 0 1 0 0 2 0 1 0 0 0 0 0 11 1 1201.7295 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;A4UCU0;F5H1N9 Q53GJ1 135 145 hCG_27698;DDX47;E4-DBP Probable ATP-dependent RNA helicase DDX47 yes no 3 0.0018686 51.286 1 0.89657 1.1662 NaN 1 Median 0.89657 1.1662 NaN 1 0 Median NaN NaN NaN 0 0 Median 27534000 12921000 14613000 27534000 12921000 14613000 0 0 0 6408 249 6548 23373 35339 35339 1 KPHTLLQR NNILKIVADFSASVKKPHTLLQRVKACTTE DFSASVKKPHTLLQRVKACTTEEDQEKLMQ K K P Q R V 0 1 0 0 0 1 0 0 1 0 2 1 0 0 1 0 1 0 0 0 0 0 8 1 991.5927 B4DUT7;A0A140VJK6;P49915;Q53F90 B4DUT7 427 434 GMPS GMP synthase [glutamine-hydrolyzing] yes no 3 0.029774 60.118 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2362600 2362600 0 2362600 2362600 0 0 0 0 6409 498 6549 23374 35340 35340 1 KPHTTEEIGVPISR SSPLTGKRQDSGTMKKPHTTEEIGVPISRN KKPHTTEEIGVPISRNGSTLGLKSQNGCIP K K P S R N 0 1 0 0 0 0 2 1 1 2 0 1 0 0 2 1 2 0 0 1 0 0 14 1 1562.8417 A0A024R8V6;Q9P275;A0A075B784;Q9H9C5;E9PEW0;B3KMW2 A0A024R8V6 478 491 USP36;DUB1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 4 0.039527 17.402 1 1.146 1.448 NaN 1 Median 1.146 1.448 NaN 1 0 Median NaN NaN NaN 0 0 Median 6240500 2810500 3430000 6240500 2810500 3430000 0 0 0 6410 205 6550 23375 35341 35341 1 KPIALNIIR LVSKIQVPDYYDIIKKPIALNIIREKVNKC YYDIIKKPIALNIIREKVNKCEYKLASEFI K K P I R E 1 1 1 0 0 0 0 0 0 3 1 1 0 0 1 0 0 0 0 0 0 0 9 1 1036.6757 D3DS96;Q9NRL2;Q59G54 D3DS96 1471 1479 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A no no 3 0.01142 43.442 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6411 979 6551 23376 35342 35342 1 KPIDFVLNK YLGKITASLEIRAIKKPIDFVLNKVAKRGP EIRAIKKPIDFVLNKVAKRGPSRDEAKHSD K K P N K V 0 0 1 1 0 0 0 0 0 1 1 2 0 1 1 0 0 0 0 1 0 0 9 1 1072.6281 Q2TB10;B7Z4V7 Q2TB10 563 571 ZNF800 Zinc finger protein 800 yes no 2 1.6072E-05 140.11 3 2 0.73157 0.90544 11.104 4 Median 0.74797 0.926 12.453 3 0 Median 0.59941 0.88534 NaN 1 0 Median 43350000 26112000 17238000 37656000 22147000 15509000 5694600 3965200 1729400 6412 1530 6552 23377;23378;23379;23380;23381 35343;35344;35345;35346;35347;35348 35344 6 KPIFDNFRPPPLTPEDVGFASGFSASGTAASAR QYFSSAKYAKEGLIRKPIFDNFRPPPLTPE FASGFSASGTAASARLFSPLHSGTRFDMHK R K P A R L 5 2 1 2 0 0 1 3 0 1 1 1 0 4 5 4 2 0 0 1 0 0 33 2 3406.6946 Q03164;E9PR05 Q03164 645 677 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 4 1.4516E-05 38.054 1 2 0.94114 1.2176 5.9841 3 Plateau 0.99228 1.2202 NaN 1 0 Median 0.6664 1.1093 3.3257 2 0 Median 48991000 28693000 20297000 18470000 9873200 8596500 30521000 18820000 11701000 6413 1438 6553 23382;23383;23384 35349;35350;35351;35352;35353 35351 5 KPIPLENPK EQRKLRQAVKDAVSKKPIPLENPKEKRPGK KDAVSKKPIPLENPKEKRPGKRIEREEEEE K K P P K E 0 0 1 0 0 0 1 0 0 1 1 2 0 0 3 0 0 0 0 0 0 0 9 1 1034.6124 A8K905;Q8WTT2 A8K905 60 68 NOC3L Nucleolar complex protein 3 homolog yes no 2 0.017716 56.258 1 2 0.72418 1.1056 8.7829 3 Median 0.79568 0.97522 NaN 1 0 Median 0.71276 1.13 3.0916 2 0 Median 59837000 32917000 26920000 34384000 18240000 16144000 25454000 14677000 10777000 6414 643 6554 23385;23386;23387 35354;35355;35356 35354 3 KPIPTWAR DLNSDDSTDDEAHPRKPIPTWARGTPLSQA DDEAHPRKPIPTWARGTPLSQAIIHQYYHP R K P A R G 1 1 0 0 0 0 0 0 0 1 0 1 0 0 2 0 1 1 0 0 0 0 8 1 967.56034 Q9NQS7 Q9NQS7 840 847 INCENP Inner centromere protein yes yes 2 0.050181 45.335 1 0.69635 1.1502 NaN 1 Median NaN NaN NaN 0 0 Median 0.69635 1.1502 NaN 1 0 Median 20447000 12018000 8429300 0 0 0 20447000 12018000 8429300 6415 1752 6555 23388 35357 35357 1 KPLFHGDSEIDQLFR DIWSIGTIFAELATKKPLFHGDSEIDQLFR KPLFHGDSEIDQLFRIFRALGTPNNEVWPE K K P F R I 0 1 0 2 0 1 1 1 1 1 2 1 0 2 1 1 0 0 0 0 0 0 15 1 1800.9159 A0A024QZP7;P06493;Q5H9N4;A0A087WZZ9;I6L9I5;A0A024QZJ8 A0A024QZP7 201 215 CDC2;CDK1;DKFZp686L20222 Cyclin-dependent kinase 1 yes no 3;4 6.4303E-08 116.87 6 3 0.60155 0.79287 43.648 8 Median 0.57402 0.74542 16.877 5 0 Median 0.92544 1.5541 13.456 3 0 Median 155920000 96582000 59336000 117060000 76907000 40149000 38862000 19674000 19187000 6416 18 6556 23389;23390;23391;23392;23393;23394;23395;23396;23397 35358;35359;35360;35361;35362;35363;35364;35365;35366;35367;35368;35369;35370;35371;35372 35363 15 KPLLSPIPELPEVPEMTPSIPSIR SVQKSLYGERDIASKKPLLSPIPELPEVPE LPEVPEMTPSIPSIRRLGSGYFSSNGKLEE K K P I R R 0 1 0 0 0 0 3 0 0 3 3 1 1 0 7 3 1 0 0 1 0 0 24 1 2639.4608 E9PEI0;Q69YH5;A8K8Z0;B7Z5Q5 E9PEI0 572 595 CDCA2 Cell division cycle-associated protein 2 yes no 3 0.037011 41.208 2 0.59788 0.73619 NaN 1 Median 0.59788 0.73619 NaN 1 0 Median NaN NaN NaN 0 0 Median 2456300 1275400 1181000 2456300 1275400 1181000 0 0 0 6417 1023 6557 23398;23399 35373;35374 35373 2 KPLPDHVSIVEPK KIMLPWDPTGKIGPKKPLPDHVSIVEPKDE PKKPLPDHVSIVEPKDEILPTTPISEQKGG K K P P K D 0 0 0 1 0 0 1 0 1 1 1 2 0 0 3 1 0 0 0 2 0 0 13 1 1457.8242 P23396;Q53G83;E9PL09;E9PPU1;H0YEU2;Q9NQS8;E9PSF4 P23396 202 214 RPS3 40S ribosomal protein S3 yes no 2;3 2.0809E-41 196.02 5 2 0.76689 0.94163 60.754 7 Median 0.76316 0.93127 19.54 5 0 Median 1.7812 2.8658 3.3947 2 0 Median 606840000 319770000 287070000 524080000 291970000 232120000 82761000 27806000 54955000 6418 1293 6558 23400;23401;23402;23403;23404;23405;23406 35375;35376;35377;35378;35379;35380;35381;35382;35383;35384;35385;35386;35387;35388 35377 14 KPLPDHVSIVEPKDEILPTTPISEQK KIMLPWDPTGKIGPKKPLPDHVSIVEPKDE PKDEILPTTPISEQKGGKPEPPAMPQPVPT K K P Q K G 0 0 0 2 0 1 3 0 1 3 2 3 0 0 5 2 2 0 0 2 0 0 26 2 2909.575 P23396;Q53G83;E9PL09;E9PPU1;H0YEU2;Q9NQS8;E9PSF4 P23396 202 227 RPS3 40S ribosomal protein S3 yes no 4 5.3312E-41 157.53 4 2 0.71043 0.83952 3.2431 4 Median 0.71043 0.83952 3.2431 4 0 Median NaN NaN NaN 0 0 Median 398500000 192000000 206510000 349120000 192000000 157120000 49384000 0 49384000 6419 1293 6559 23407;23408;23409;23410;23411;23412 35389;35390;35391;35392;35393;35394;35395;35396;35397;35398 35392 10 KPLRVDLILENTSK TKKRTKVQKKSLLLKKPLRVDLILENTSKV KKPLRVDLILENTSKVPAPKDVLAHQVPNA K K P S K V 0 1 1 1 0 0 1 0 0 1 3 2 0 0 1 1 1 0 0 1 0 0 14 2 1624.9512 Q7L4X7;Q96CS0;Q53YP0;B4E1N4;Q9NZM5;B4DVK1;B4E013;M0QX73 Q7L4X7 110 123 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes no 3 0.010325 33.842 1 0.67671 0.80772 NaN 1 Median 0.67671 0.80772 NaN 1 0 Median NaN NaN NaN 0 0 Median 12555000 7688900 4866100 12555000 7688900 4866100 0 0 0 6420 887 6560 23413 35399 35399 1 KPLTPYFR PYKGKKLKKHPDFPKKPLTPYFRFFMEKRA KHPDFPKKPLTPYFRFFMEKRAKYAKLHPE K K P F R F 0 1 0 0 0 0 0 0 0 0 1 1 0 1 2 0 1 0 1 0 0 0 8 1 1020.5757 E9PKP7;P17480;A8K962;B4DNQ1;Q05BZ1;Q9BQR2;E9PMM2 E9PKP7 114 121 UBTF Nucleolar transcription factor 1 yes no 2;3 0.0035831 105.25 5 2 0.78606 1.077 7.5653 7 Median 0.81678 1.0415 8.5457 5 0 Median 0.71494 1.0951 2.3514 2 0 Median 176510000 94263000 82249000 161590000 86049000 75544000 14920000 8214900 6705400 6421 1039 6561 23414;23415;23416;23417;23418;23419;23420 35400;35401;35402;35403;35404;35405;35406;35407 35401 8 KPLTSNCTIQIATPGK GQVHLFEHILNGYCKKPLTSNCTIQIATPG PLTSNCTIQIATPGKGKKSTPKPIPILAAG K K P G K G 1 0 1 0 1 1 0 1 0 2 1 2 0 0 2 1 3 0 0 0 0 0 16 1 1727.924 Q15061;C9IZK7 Q15061 309 324 WDR43 WD repeat-containing protein 43 yes no 2;3 4.843E-10 128.35 6 1 1.0609 1.297 23.193 5 Median 1.0672 1.3058 9.2947 4 0 Median 0.4852 0.77581 NaN 1 0 Median 146780000 73123000 73653000 134360000 65101000 69261000 12415000 8022400 4392600 6422 1505 6562 23421;23422;23423;23424;23425;23426;23427 35408;35409;35410;35411;35412;35413;35414;35415;35416;35417;35418;35419 35409 12 KPLTVLNK PRFSIAPSSLDPSNRKPLTVLNKGLENPLP SLDPSNRKPLTVLNKGLENPLPERPREKEE R K P N K G 0 0 1 0 0 0 0 0 0 0 2 2 0 0 1 0 1 0 0 1 0 0 8 1 911.5804 B2R841;P53350;B4E083;Q59GD0;D3DWF3;I3L2H5 B2R841 338 345 PLK1 Serine/threonine-protein kinase PLK;Serine/threonine-protein kinase PLK1 yes no 2 0.0096338 79.059 1 2 0.86514 1.358 21.465 3 Median 0.80364 0.98811 NaN 1 0 Median 0.90679 1.4211 6.4211 2 0 Median 24195000 12619000 11575000 8127700 4174900 3952800 16067000 8444500 7622600 6423 714 6563 23428;23429;23430 35420;35421;35422;35423 35420 4 KPLVIIAEDVDGEALSTLVLNR IQSIVPALEIANAHRKPLVIIAEDVDGEAL EDVDGEALSTLVLNRLKVGLQVVAVKAPGF R K P N R L 2 1 1 2 0 0 2 1 0 2 4 1 0 0 1 1 1 0 0 3 0 0 22 1 2364.3264 B7Z5E7;B7Z4F6;B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z532;B9VPB4;B9VP19 B7Z5E7 213 234 HSPD1 60 kDa heat shock protein, mitochondrial yes no 3 0.0020936 65.365 2 0.47095 0.61257 NaN 1 Median 0.47095 0.61257 NaN 1 0 Median NaN NaN NaN 0 0 Median 13264000 10902000 2362300 13264000 10902000 2362300 0 0 0 6424 110 6564 23431;23432 35424;35425 35424 2 KPNLGLK EKRYQDIIHSIHLARKPNLGLKSCDGNQEL IHSIHLARKPNLGLKSCDGNQELLNFLRSD R K P L K S 0 0 1 0 0 0 0 1 0 0 2 2 0 0 1 0 0 0 0 0 0 0 7 1 768.48577 Q9UIG0 Q9UIG0 1037 1043 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.051303 55.441 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30387000 0 30387000 30387000 0 30387000 0 0 0 6425 1786 6565 23433 35426 35426 1 KPNPVEEEPSR SGDEGIKVLKQRAKKKPNPVEEEPSRRRPR RAKKKPNPVEEEPSRRRPRAPKEKAQPLED K K P S R R 0 1 1 0 0 0 3 0 0 0 0 1 0 0 3 1 0 0 0 1 0 0 11 1 1280.6361 P46013 P46013 2653 2663 MKI67 Antigen KI-67 yes yes 2;3 1.047E-06 134.57 4 3 0.80372 1.1708 17.207 6 Median 0.74947 1.0399 9.3252 3 0 Median 0.94415 1.4642 13.354 3 0 Median 55655000 30468000 25188000 17177000 9745200 7431700 38478000 20722000 17756000 6426 1342 6566 23434;23435;23436;23437;23438;23439;23440 35427;35428;35429;35430;35431;35432;35433;35434;35435 35429 9 KPPARPSAAAAAIAVAAAEEER GPGGPPQKPAPSSQRKPPARPSAAAAAIAV AAAAAIAVAAAEEERRLRQRNRLRLEEDKP R K P E R R 10 2 0 0 0 0 3 0 0 1 0 1 0 0 3 1 0 0 0 1 0 0 22 2 2146.1495 Q9Y5J1;B2RAX6 Q9Y5J1 49 70 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 3;4 6.0101E-08 64.954 4 4 0.82428 1.2981 16.579 7 Median 0.86497 1.0576 4.622 3 0 Plateau 0.82323 1.4579 5.1875 4 0 Linear 165230000 83824000 81401000 77130000 37035000 40095000 88096000 46789000 41307000 6427 1830 6567 23441;23442;23443;23444;23445;23446;23447;23448 35436;35437;35438;35439;35440;35441;35442;35443;35444;35445 35443 10 KPPARPSAAAAAIAVAAAEEERR GPGGPPQKPAPSSQRKPPARPSAAAAAIAV AAAAIAVAAAEEERRLRQRNRLRLEEDKPA R K P R R L 10 3 0 0 0 0 3 0 0 1 0 1 0 0 3 1 0 0 0 1 0 0 23 3 2302.2506 Q9Y5J1;B2RAX6 Q9Y5J1 49 71 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 4 0.00053357 34.658 1 1 0.82417 0.93055 4.9571 2 Median 0.85507 0.96374 NaN 1 0 Median 0.79439 0.8985 NaN 1 0 Median 37176000 20504000 16672000 15656000 8597800 7058200 21520000 11906000 9613700 6428 1830 6568 23449;23450 35446;35447 35447 2 KPPCCVLSNPDQK RPEYREDFVLTVTGKKPPCCVLSNPDQKGK GKKPPCCVLSNPDQKGKMRRIDCLRQADKV K K P Q K G 0 0 1 1 2 1 0 0 0 0 1 2 0 0 3 1 0 0 0 1 0 0 13 1 1541.733 S4R3K4;B1AKN6;B1AKN7;B1AKN5;B4DRN9;B1AKN8;Q12857;S4R308;K7EMQ5;K7ESG9;K7EKH0;K7EJB0;Q7Z3K7;C9JWJ8;K7EN08;D2DXM9;B4DHW2;Q14938 S4R3K4 52 64 NFIA;NFIX;DKFZp686I05275 Nuclear factor 1;Nuclear factor 1 A-type;Nuclear factor 1 X-type yes no 2;3 0.0015135 59.426 2 0.63724 0.76075 1.1731 2 Median 0.63724 0.76075 1.1731 2 0 Median NaN NaN NaN 0 0 Median 12390000 6759700 5630600 12390000 6759700 5630600 0 0 0 6429 674 6569 23451;23452 35448;35449;35450 35449 3 KPPLLNNADSVQAK SNRFYTLIPHDFGMKKPPLLNNADSVQAKV KKPPLLNNADSVQAKVEMLDNLLDIEVAYS K K P A K V 2 0 2 1 0 1 0 0 0 0 2 2 0 0 2 1 0 0 0 1 0 0 14 1 1493.8202 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 748 761 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2;3 5.7294E-41 207.34 8 5 1.0709 1.3183 42.038 12 Median 1.1198 1.3651 4.9338 8 0 Median 0.35965 0.58249 1.9747 4 0 Median 775520000 432650000 342870000 547760000 264130000 283630000 227760000 168520000 59240000 6430 107 6570 23453;23454;23455;23456;23457;23458;23459;23460;23461;23462;23463;23464;23465 35451;35452;35453;35454;35455;35456;35457;35458;35459;35460;35461;35462;35463;35464;35465;35466;35467;35468;35469;35470;35471;35472;35473;35474 35459 24 KPPNQSLPLQPFQLAFGHQVNR VGRPQAPLNSFHAAKKPPNQSLPLQPFQLA PLQPFQLAFGHQVNRQVFRQGPPPPNPVAA K K P N R Q 1 1 2 0 0 4 0 1 1 0 3 1 0 2 4 1 0 0 0 1 0 0 22 1 2515.3448 A0A1C7CYX1;A0A0A0MSU2;A0PJD3;A0A024R689;Q6PJG2;H7C1L3 A0A1C7CYX1 206 227 ELMSAN1;C14orf43 ELM2 and SANT domain-containing protein 1 yes no 4 0.046904 13.057 1 1.4346 2.1069 NaN 1 Median NaN NaN NaN 0 0 Median 1.4346 2.1069 NaN 1 0 Median 3702500 1541600 2160900 0 0 0 3702500 1541600 2160900 6431 523 6571 23466 35475 35475 0 KPPTDEELK SEDSSDDEPLIKKLKKPPTDEELKETIKKL LIKKLKKPPTDEELKETIKKLLASANLEEV K K P L K E 0 0 0 1 0 0 2 0 0 0 1 2 0 0 2 0 1 0 0 0 0 0 9 1 1055.5499 B4DNW3;H0Y993;P35659;B4DFG0 P35659 318 326 DEK Protein DEK no no 2 0.0079938 68.76 1 0.8136 1.0097 NaN 1 Median 0.8136 1.0097 NaN 1 0 Median NaN NaN NaN 0 0 Median 24437000 13331000 11106000 24437000 13331000 11106000 0 0 0 6432 1322;843 6572 23467 35476 35476 1 KPPVKPPTEPIGFDLEIEK ELDPRILEGGPILPKKPPVKPPTEPIGFDL KPPTEPIGFDLEIEKRIQERESKKKTEDEH K K P E K R 0 0 0 1 0 0 3 1 0 2 1 3 0 1 5 0 1 0 0 1 0 0 19 2 2133.1722 Q643R0;Q9ULW0;B3KM90 Q643R0 421 439 HCTP4;TPX2 Targeting protein for Xklp2 yes no 3 3.699E-06 96.153 4 2 0.76994 0.91343 10.859 6 Median 0.77933 0.90459 1.3862 4 0 Median 0.63879 1.1148 1.8723 2 0 Median 235220000 134760000 100470000 126850000 72312000 54533000 108380000 62443000 45935000 6433 1581 6573 23468;23469;23470;23471;23472;23473 35477;35478;35479;35480;35481;35482;35483;35484;35485;35486;35487 35481 11 KPQAILEEK ERKDLRAAIEVNAGRKPQAILEEKLKQLEE EVNAGRKPQAILEEKLKQLEEECRQKEAER R K P E K L 1 0 0 0 0 1 2 0 0 1 1 2 0 0 1 0 0 0 0 0 0 0 9 1 1054.6023 Q8N556;Q6ZRV0 Q8N556 606 614 AFAP1 Actin filament-associated protein 1 yes no 2 0.036467 51.066 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4482700 4482700 0 4482700 4482700 0 0 0 0 6434 1639 6574 23474 35488 35488 1 KPQDQLVIER RRQPQEEVVHEDQGKKPQDQLVIERERKWE EDQGKKPQDQLVIERERKWEQQLQEEQEQK K K P E R E 0 1 0 1 0 2 1 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 10 1 1224.6826 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424;H0YDQ3 A0A1P7ZIM8 951 960 LMO7 LIM domain only protein 7 yes no 2;3 9.3671E-07 146.11 5 0.44718 0.59537 7.8711 5 Median 0.44718 0.59537 7.8711 5 0 Median NaN NaN NaN 0 0 Median 63939000 40997000 22942000 63939000 40997000 22942000 0 0 0 6435 525 6575 23475;23476;23477;23478;23479 35489;35490;35491;35492;35493 35489 5 KPQLDVTR EKKNQLELLRVMNSKKPQLDVTRATNKQMR LRVMNSKKPQLDVTRATNKQMREEDQEEAA K K P T R A 0 1 0 1 0 1 0 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 8 1 955.54508 Q15050 Q15050 279 286 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2;3 0.00011633 129.42 5 2 0.73488 1.0865 10.152 5 Median 0.76181 0.99762 5.802 3 0 Median 0.69853 1.2057 0.69336 2 0 Median 359860000 207050000 152810000 246610000 140450000 106170000 113250000 66602000 46645000 6436 1503 6576 23480;23481;23482;23483;23484;23485;23486 35494;35495;35496;35497;35498;35499;35500;35501;35502 35496 9 KPSDSVHITNDDER EKNKEAIYSGYIRNRKPSDSVHITNDDERF RKPSDSVHITNDDERFLHHLIIEEKEKDSF R K P E R F 0 1 1 3 0 0 1 0 1 1 0 1 0 0 1 2 1 0 0 1 0 0 14 1 1611.7489 A6NHR9 A6NHR9 291 304 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3 0.011767 55.66 1 0.45401 0.5963 NaN 1 Median 0.45401 0.5963 NaN 1 0 Median NaN NaN NaN 0 0 Median 1748100 1148600 599540 1748100 1148600 599540 0 0 0 6437 568 6577 23487 35503 35503 1 KPSEIQQVNNPELGLSR PPPILETSSLELASKKPSEIQQVNNPELGL SEIQQVNNPELGLSRAALQMQFNAAERETN K K P S R A 0 1 2 0 0 2 2 1 0 1 2 1 0 0 2 2 0 0 0 1 0 0 17 1 1908.0065 Q8WX93;B2RTX2 Q8WX93 580 596 PALLD Palladin yes no 3 0.030562 25.995 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6438 1669 6578 23488 35504 35504 1 KPSSSASSSSSSSSFSLDAAGASLATLPGGSILQPR CTVVNSPGDAPKPHRKPSSSASSSSSSSSF ASLATLPGGSILQPRPSLPLSSTMHLGPVV R K P P R P 5 1 0 1 0 1 0 3 0 1 4 1 0 1 3 14 1 0 0 0 0 0 36 1 3394.6852 Q7Z5J4 Q7Z5J4 1626 1661 RAI1 Retinoic acid-induced protein 1 yes yes 3 0.045244 4.0738 1 0.73156 0.94148 NaN 1 Median 0.73156 0.94148 NaN 1 0 Median NaN NaN NaN 0 0 Median 5521600 3838000 1683700 5521600 3838000 1683700 0 0 0 6439 1617 6579 23489 35505 35505 1 KPTSQIPETK QVARFCLFHSFFVTKKPTSQIPETKHPFSF FFVTKKPTSQIPETKHPFSFPLENQAREAV K K P T K H 0 0 0 0 0 1 1 0 0 1 0 2 0 0 2 1 2 0 0 0 0 0 10 1 1127.6186 Q9BQG0;I3L1L3;B4DZZ1;I3L2H8 Q9BQG0 489 498 MYBBP1A Myb-binding protein 1A yes no 2 0.024391 79.489 2 0.58444 0.71849 NaN 1 Median 0.58444 0.71849 NaN 1 0 Median NaN NaN NaN 0 0 Median 8635600 5372100 3263500 8635600 5372100 3263500 0 0 0 6440 1708 6580 23490;23491 35506;35507;35508 35507 3 KPVEELTEEEK SPEFKDPLIDKEYYRKPVEELTEEEKYVRE EYYRKPVEELTEEEKYVRELKKTQLIKAAP R K P E K Y 0 0 0 0 0 0 5 0 0 0 1 2 0 0 1 0 1 0 0 1 0 0 11 1 1329.6664 A0A024R8L0;J3QLS3;Q9Y2R9;J3QKW2 A0A024R8L0 53 63 MRPS7 28S ribosomal protein S7, mitochondrial yes no 2 3.994E-11 177.57 3 0.49955 0.62302 46.461 2 Median 0.49955 0.62302 46.461 2 0 Median NaN NaN NaN 0 0 Median 10852000 7100200 3752100 10852000 7100200 3752100 0 0 0 6441 199 6581 23492;23493;23494 35509;35510;35511;35512 35510 4 KPVGEVHSQFSTGHANSPCTIIIGK QRSMNKRQRRPATPKKPVGEVHSQFSTGHA STGHANSPCTIIIGKAHTEKVHVPARPYRV K K P G K A 1 0 1 0 1 1 1 3 2 3 0 2 0 1 2 3 2 0 0 2 0 0 25 1 2663.349 P46013;Q70L73 P46013 697 721 MKI67 Antigen KI-67 no no 4 2.8816E-46 125.16 3 0.91005 1.1123 4.4513 3 Median 0.91005 1.1123 4.4513 3 0 Median NaN NaN NaN 0 0 Median 463260000 234250000 229010000 463260000 234250000 229010000 0 0 0 6442 1342;1604 6582 23495;23496;23497 35513;35514;35515;35516;35517;35518;35519 35515 7 KPVIVFVPSR MAKPVYHAITKHSPKKPVIVFVPSRKQTRL KHSPKKPVIVFVPSRKQTRLTAIDILTTCA K K P S R K 0 1 0 0 0 0 0 0 0 1 0 1 0 1 2 1 0 0 0 3 0 0 10 1 1140.7019 O75643;A4FU77;B4E150;B4E0P5;Q9UNV9;A2RRQ7 O75643 1557 1566 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 0.0058431 72.848 3 0.91063 1.2619 43.734 3 Median 0.91063 1.2619 43.734 3 0 Median NaN NaN NaN 0 0 Median 8520100 4169200 4350900 8520100 4169200 4350900 0 0 0 6443 1206 6583 23498;23499;23500 35520;35521;35522;35523 35521 4 KPVLGSYR QMTTEKQKQDANMPKKPVLGSYRGQIVQSK QDANMPKKPVLGSYRGQIVQSKINSFRKPL K K P Y R G 0 1 0 0 0 0 0 1 0 0 1 1 0 0 1 1 0 0 1 1 0 0 8 1 918.5287 B2RMQ4;Q8WWK9 B2RMQ4 172 179 CKAP2 Cytoskeleton-associated protein 2 yes no 2 0.019971 62.546 2 1 1.1113 1.4409 24.569 3 Median 1.1375 1.4783 3.624 2 0 Median 0.59825 0.96817 NaN 1 0 Median 71478000 34737000 36741000 56349000 25449000 30900000 15129000 9287600 5841100 6444 745 6584 23501;23502;23503 35524;35525;35526 35524 3 KPVSSYLR YLPRWFSSVLASCPKKPVSSYLRFSKEQLP VLASCPKKPVSSYLRFSKEQLPIFKAQNPD K K P L R F 0 1 0 0 0 0 0 0 0 0 1 1 0 0 1 2 0 0 1 1 0 0 8 1 948.53927 Q6LES8;E5KSX8;E5KSU5;Q00059;H7BYN3;Q05D31;Q3SX57 Q6LES8 52 59 TFAM Transcription factor A, mitochondrial yes no 2 0.0022832 118.74 2 0.67295 0.88645 2.3071 2 Median 0.67295 0.88645 2.3071 2 0 Median NaN NaN NaN 0 0 Median 76053000 43074000 32979000 76053000 43074000 32979000 0 0 0 6445 1002 6585 23504;23505 35527;35528;35529 35527 3 KPVSTTNLQDPGVLGCPR NPPNLALYLLGFELKKPVSTTNLQDPGVLG STTNLQDPGVLGCPRTCLHAILNILEKGTE K K P P R T 0 1 1 1 1 1 0 2 0 0 2 1 0 0 3 1 2 0 0 2 0 0 18 1 1937.9993 Q92621;U3KQ97;U3KQ47 Q92621 1013 1030 NUP205 Nuclear pore complex protein Nup205 yes no 3 1.7572E-05 106.87 3 0.22086 0.28453 4.8479 2 Median 0.22086 0.28453 4.8479 2 0 Median NaN NaN NaN 0 0 Median 22320000 18572000 3748000 22320000 18572000 3748000 0 0 0 6446 1673 6586 23506;23507;23508 35530;35531;35532;35533 35533 4 KPWQLQGEVTAQK MNEKIASLEKELLEKKPWQLQGEVTAQKRP EKKPWQLQGEVTAQKRPENSLLEETLHFDH K K P Q K R 1 0 0 0 0 3 1 1 0 0 1 2 0 0 1 0 1 1 0 1 0 0 13 1 1511.8096 B3KPV5;O00566;U3KQ48 B3KPV5 382 394 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 3 0.040447 18.829 1 0.67139 1.0123 NaN 1 Median NaN NaN NaN 0 0 Median 0.67139 1.0123 NaN 1 0 Median 4540100 2698400 1841700 0 0 0 4540100 2698400 1841700 6447 767 6587 23509 35534 35534 1 KPYGVLYK NATVTKVLKDVYALKKPYGVLYKKKNITRP KDVYALKKPYGVLYKKKNITRPFEDQTSLE K K P Y K K 0 0 0 0 0 0 0 1 0 0 1 2 0 0 1 0 0 0 2 1 0 0 8 1 966.55385 A8K800;Q9H7B2;Q5VXN0;B4DWS5 A8K800 57 64 RPF2 Ribosome production factor 2 homolog yes no 2 0.00057055 124.59 3 2 0.79567 1.0077 5.5229 5 Median 0.80353 0.99192 1.7667 3 0 Median 0.67914 1.0914 1.7929 2 0 Median 295410000 167560000 127850000 226880000 128720000 98161000 68535000 38848000 29687000 6448 637 6588 23510;23511;23512;23513;23514 35535;35536;35537;35538;35539;35540;35541;35542;35543;35544 35536 10 KPYVLNDLEAEASLPEK AMEVDIEERPKELVRKPYVLNDLEAEASLP YVLNDLEAEASLPEKKGNTLSRDLIDYVRY R K P E K K 2 0 1 1 0 0 3 0 0 0 3 2 0 0 2 1 0 0 1 1 0 0 17 1 1914.9939 Q9Y3C1;D6RIC3;A0A0C4DGU5;A0A087X2G6;Q9P0T8 Q9Y3C1 90 106 NOP16 Nucleolar protein 16 yes no 2;3 2.3322E-13 154.13 5 3 0.82793 1.0166 20.11 8 Median 0.83977 1.0269 15.707 5 0 Median 0.50238 0.80885 4.2205 3 0 Median 300070000 179250000 120820000 164650000 87837000 76814000 135420000 91413000 44007000 6449 1817 6589 23515;23516;23517;23518;23519;23520;23521;23522 35545;35546;35547;35548;35549;35550;35551;35552;35553;35554;35555;35556;35557;35558;35559;35560 35547 16 KQDGFTHILLSTK RQTESAYRYRDIVVRKQDGFTHILLSTKSS VRKQDGFTHILLSTKSSENNSLNPEVMREV R K Q T K S 0 0 0 1 0 1 0 1 1 1 2 2 0 1 0 1 2 0 0 0 0 0 13 1 1486.8144 Q9Y232;C9JQG7 Q9Y232 348 360 CDYL Chromodomain Y-like protein yes no 3 0.00018957 106.55 4 2 0.77854 1.0816 26.068 4 Median 0.69135 0.84809 13.703 2 0 Median 0.8209 1.2998 5.293 2 0 Median 79188000 41740000 37448000 54942000 29104000 25837000 24247000 12635000 11611000 6450 1802 6590 23523;23524;23525;23526;23527;23528 35561;35562;35563;35564;35565;35566;35567;35568;35569 35563 9 KQEEGAEIQCEAETGGTHK SGLVPKKKQSVVQEKKQEEGAEIQCEAETG GAEIQCEAETGGTHKRDFSEIKSQQCQGNE K K Q H K R 2 0 0 0 1 2 5 3 1 1 0 2 0 0 0 0 2 0 0 0 0 0 19 1 2100.9382 A0A024R0F1;Q9UNY4 A0A024R0F1 195 213 TTF2 Transcription termination factor 2 yes no 3 5.0516E-07 100.07 3 0.74991 0.93444 6.3859 3 Median 0.74991 0.93444 6.3859 3 0 Median NaN NaN NaN 0 0 Median 12487000 6071100 6416300 12487000 6071100 6416300 0 0 0 6451 33 6591 23529;23530;23531 35570;35571;35572;35573;35574;35575;35576 35572 7 KQEEGAEIQCEAETGGTHKR SGLVPKKKQSVVQEKKQEEGAEIQCEAETG AEIQCEAETGGTHKRDFSEIKSQQCQGNEL K K Q K R D 2 1 0 0 1 2 5 3 1 1 0 2 0 0 0 0 2 0 0 0 0 0 20 2 2257.0393 A0A024R0F1;Q9UNY4 A0A024R0F1 195 214 TTF2 Transcription termination factor 2 yes no 3 7.3936E-16 131.9 1 0.81266 1.0101 NaN 1 Median 0.81266 1.0101 NaN 1 0 Median NaN NaN NaN 0 0 Median 2156200 1202000 954220 2156200 1202000 954220 0 0 0 6452 33 6592 23532 35577;35578 35578 2 KQEELVQQVR QPLCKAFMVTDEDIRKQEELVQQVRKRLEE DEDIRKQEELVQQVRKRLEEALMADMLAHV R K Q V R K 0 1 0 0 0 3 2 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 10 1 1255.6884 O95983;B3KMA8;K7EIE8 O95983 227 236 MBD3 Methyl-CpG-binding domain protein 3 yes no 2;3 8.1009E-07 143.04 3 3 0.84637 1.2427 33.561 6 Median 0.66429 0.88267 7.5094 3 0 Median 1.0122 1.6425 4.4449 3 0 Median 74762000 39729000 35032000 40242000 22683000 17560000 34520000 17047000 17473000 6453 1225 6593 23533;23534;23535;23536;23537;23538 35579;35580;35581;35582;35583;35584;35585 35582 7 KQEGPATQVDSAVGTLPATSPQSTSVQAK GASSSKESSRISDGKKQEGPATQVDSAVGT TLPATSPQSTSVQAKGTNKLRKPKLPEVQQ K K Q A K G 4 0 0 1 0 4 1 2 0 0 1 2 0 0 3 4 4 0 0 3 0 0 29 1 2882.4621 E7ETY2;B4DRA2;J3KQ96 E7ETY2 1091 1119 TCOF1 no no 3 6.6771E-05 46.145 3 1.0563 1.32 57.729 2 Median 1.0563 1.32 57.729 2 0 Median NaN NaN NaN 0 0 Median 18324000 9035600 9288700 18324000 9035600 9288700 0 0 0 6454 1016;1135 6594 23539;23540;23541 35586;35587;35588 35587 3 KQELEEICHDLEAR LCAEAEELRARLTAKKQELEEICHDLEARV KKQELEEICHDLEARVEEEEERCQHLQAEK K K Q A R V 1 1 0 1 1 1 4 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 14 1 1768.8414 A0A024R1N1;P35579;Q86XU5;A0A0U4BW16 A0A024R1N1 910 923 MYH9 Myosin-9 no no 3 2.1451E-07 132.23 3 0.94053 1.2446 3.3324 3 Median 0.94053 1.2446 3.3324 3 0 Median NaN NaN NaN 0 0 Median 306460000 165320000 141140000 306460000 165320000 141140000 0 0 0 6455 61;490 6595 23542;23543;23544 35589;35590;35591;35592 35590 4 KQELEVLTANIQDLK KKDNLLKLIAEVKGKKQELEVLTANIQDLK KQELEVLTANIQDLKEEYSRKKETISTANK K K Q L K E 1 0 1 1 0 2 2 0 0 1 3 2 0 0 0 0 1 0 0 1 0 0 15 1 1740.9622 Q9HBM1;C9JW94 Q9HBM1 93 107 SPC25 Kinetochore protein Spc25 yes no 3 0.0002441 65.467 2 1 0.39254 0.54769 6.2646 2 Median 0.42042 0.52396 NaN 1 0 Median 0.3665 0.5725 NaN 1 0 Median 23293000 17445000 5847800 15733000 12118000 3615000 7559900 5327100 2232800 6456 1749 6596 23545;23546;23547 35593;35594;35595 35594 3 KQELFHQFVSLSTSGGK DVVLEEHLKEIADLKKQELFHQFVSLSTSG ELFHQFVSLSTSGGKYQFLADSDTSLMLSL K K Q G K Y 0 0 0 0 0 2 1 2 1 0 2 2 0 2 0 3 1 0 0 1 0 0 17 1 1891.9792 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 456 472 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 6.6709E-11 126.91 2 1 0.88824 1.0861 16.971 3 Median 0.91897 1.1232 4.7544 2 0 Median 0.53736 0.84204 NaN 1 0 Median 64152000 34059000 30093000 54510000 28252000 26258000 9642000 5807400 3834600 6457 748 6597 23548;23549;23550 35596;35597;35598;35599;35600 35597 5 KQELLEALTK LKEACRAYGLKSGLKKQELLEALTKHFQD_ KSGLKKQELLEALTKHFQD___________ K K Q T K H 1 0 0 0 0 1 2 0 0 0 3 2 0 0 0 0 1 0 0 0 0 0 10 1 1171.6812 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356;Q6IC76 A0A024R1N4 596 605 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 2 7.2315E-46 208.6 5 1 0.53637 0.69987 10.197 5 Median 0.5533 0.67761 6.4207 4 0 Median 0.51029 0.81807 NaN 1 0 Median 539950000 337090000 202870000 467690000 292210000 175480000 72266000 44877000 27389000 6458 62 6598 23551;23552;23553;23554;23555;23556 35601;35602;35603;35604;35605;35606;35607;35608;35609;35610;35611;35612;35613 35610 13 KQELQPGTAYK SDDDLGTVPDYNQLKKQELQPGTAYKFRVA NQLKKQELQPGTAYKFRVAGINACGRGPFS K K Q Y K F 1 0 0 0 0 2 1 1 0 0 1 2 0 0 1 0 1 0 1 0 0 0 11 1 1261.6667 A6NEM2;P51610;H7C1C4 A6NEM2 1898 1908 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 3.4888E-08 152.54 2 1 0.782 0.96516 4.2746 2 Median 0.782 0.96516 4.2746 2 0 Median NaN NaN NaN 0 0 Median 20289000 8897900 11391000 16067000 8897900 7168700 4222600 0 4222600 6459 564 6599 23557;23558;23559 35614;35615;35616;35617;35618 35614 5 KQEQLTPGVVYVR QKEVAQVRKRITQRKKQEQLTPGVVYVRHL RKKQEQLTPGVVYVRHLPNLLDETQIFSYF K K Q V R H 0 1 0 0 0 2 1 1 0 0 1 1 0 0 1 0 1 0 1 3 0 0 13 1 1515.8409 Q9BYG3;B4DSM4 Q9BYG3 38 50 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2;3 1.5136E-12 129.82 6 3 0.92416 1.3841 21.771 8 Median 0.96802 1.2639 24.533 6 0 Median 0.89457 1.5372 2.6376 2 0 Median 351560000 153030000 198530000 258160000 111250000 146910000 93397000 41780000 51617000 6460 1726 6600 23560;23561;23562;23563;23564;23565;23566;23567;23568 35619;35620;35621;35622;35623;35624;35625;35626;35627;35628;35629;35630;35631;35632 35623 14 KQGEDNSTAQDTEELEK ALPTGKSKKKKKKKKKQGEDNSTAQDTEEL GEDNSTAQDTEELEKEIREDLPVNTSKTRP K K Q E K E 1 0 1 2 0 2 4 1 0 0 1 2 0 0 0 1 2 0 0 0 0 0 17 1 1920.8549 E5RJU9;A0A024R9D2;Q86UE4 E5RJU9 395 411 MTDH Protein LYRIC yes no 3 0.0014411 33.083 2 0.49972 0.70086 9.1049 2 Median NaN NaN NaN 0 0 Median 0.49972 0.70086 9.1049 2 0 Median 4774900 3202700 1572100 0 0 0 4774900 3202700 1572100 6461 218 6601 23569;23570 35633;35634 35633 2 KQISNLQQSISDAEQR NRVIQRLRSEIDNVKKQISNLQQSISDAEQ QISNLQQSISDAEQRGENALKDAKNKLNDL K K Q Q R G 1 1 1 1 0 4 1 0 0 2 1 1 0 0 0 3 0 0 0 0 0 0 16 1 1843.9388 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 417 432 KRT1 Keratin, type II cytoskeletal 1 no no 2;3 0.00022442 103.13 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16529000 16529000 0 6988800 6988800 0 9540600 9540600 0 + 6462 1113;1114 6602 23571;23572;23573;23574 35635;35636;35637;35638 35637 4 KQISNLQQSISDAEQRGENALK NRVIQRLRSEIDNVKKQISNLQQSISDAEQ QSISDAEQRGENALKDAKNKLNDLEDALQQ K K Q L K D 2 1 2 1 0 4 2 1 0 2 2 2 0 0 0 3 0 0 0 0 0 0 22 2 2456.2619 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 417 438 KRT1 Keratin, type II cytoskeletal 1 no no 4 7.8429E-09 78.674 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21220000 21220000 0 21220000 21220000 0 0 0 0 + 6463 1113;1114 6603 23575;23576 35639;35640;35641 35641 3 KQPAYLGGENLELR ECKALKQRPRFVALKKQPAYLGGENLELRD KKQPAYLGGENLELRDYQLEGLNWLAHSWC K K Q L R D 1 1 1 0 0 1 2 2 0 0 3 1 0 0 1 0 0 0 1 0 0 0 14 1 1586.8417 A0A024RC75;O14647;A0A1B0GTU9;A8K9Y5;Q8N677;B7Z3I4 A0A024RC75 472 485 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 3 0.051568 18.832 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4871300 4871300 0 4871300 4871300 0 0 0 0 6464 289 6604 23577 35642 35642 1 KQPPKEPSEVPTPK QEKDGTEKRGRGRPRKQPPKEPSEVPTPKR RKQPPKEPSEVPTPKRPRGRPKGSKNKGAA R K Q P K R 0 0 0 0 0 1 2 0 0 0 0 3 0 0 5 1 1 0 0 1 0 0 14 2 1560.8512 Q5T6U8;Q6IPL9 Q5T6U8 31 44 HMGA1 yes no 2;3 1.2772E-55 197.07 9 3 0.86629 1.0247 7.9234 10 Median 0.87383 0.99825 6.4425 7 0 Median 0.63706 1.1375 2.3705 3 0 Median 1872400000 1019900000 852540000 1499500000 794210000 705310000 372870000 225640000 147230000 6465 1570 6605 23578;23579;23580;23581;23582;23583;23584;23585;23586;23587;23588;23589 35643;35644;35645;35646;35647;35648;35649;35650;35651;35652;35653;35654;35655;35656;35657;35658;35659;35660;35661;35662;35663 35658 21 KQPPVSPGTALVGSQK QEKDGTEKRGRGRPRKQPPVSPGTALVGSQ QPPVSPGTALVGSQKEPSEVPTPKRPRGRP R K Q Q K E 1 0 0 0 0 2 0 2 0 0 1 2 0 0 3 2 1 0 0 2 0 0 16 1 1592.8886 P17096;B4DWA0;A0A024RCT9 P17096 31 46 HMGA1 High mobility group protein HMG-I/HMG-Y yes no 2;3 4.9719E-78 213 12 4 0.91357 1.1046 15.919 15 Median 0.92407 1.127 10.666 11 0 Median 0.54139 0.87846 0.87853 4 0 Median 6711100000 3621900000 3089300000 5623600000 2917200000 2706400000 1087500000 704690000 382840000 6466 1275 6606 23590;23591;23592;23593;23594;23595;23596;23597;23598;23599;23600;23601;23602;23603;23604;23605 35664;35665;35666;35667;35668;35669;35670;35671;35672;35673;35674;35675;35676;35677;35678;35679;35680;35681;35682;35683;35684;35685;35686;35687;35688;35689;35690;35691;35692;35693;35694;35695;35696;35697;35698;35699;35700;35701;35702;35703;35704;35705;35706;35707;35708;35709;35710;35711 35690 48 KQPPVSPGTALVGSQKEPSEVPTPK QEKDGTEKRGRGRPRKQPPVSPGTALVGSQ LVGSQKEPSEVPTPKRPRGRPKGSKNKGAA R K Q P K R 1 0 0 0 0 2 2 2 0 0 1 3 0 0 6 3 2 0 0 3 0 0 25 2 2557.3752 P17096;B4DWA0;A0A024RCT9 P17096 31 55 HMGA1 High mobility group protein HMG-I/HMG-Y yes no 3;4 3.49E-29 123.87 9 3 0.9686 1.0862 16.457 11 Median 0.99159 1.1466 8.7701 8 0 Median 0.46608 0.80968 3.0304 3 0 Median 392970000 212600000 180370000 286030000 140860000 145170000 106930000 71736000 35196000 6467 1275 6607 23606;23607;23608;23609;23610;23611;23612;23613;23614;23615;23616;23617 35712;35713;35714;35715;35716;35717;35718;35719;35720;35721;35722;35723;35724;35725;35726;35727;35728;35729;35730;35731;35732;35733;35734;35735 35727 24 KQPSYIGGHEGLELR DCKVLKQRPRFVALKKQPSYIGGHEGLELR KQPSYIGGHEGLELRDYQLNGLNWLAHSWC K K Q L R D 0 1 0 0 0 1 2 3 1 1 2 1 0 0 1 1 0 0 1 0 0 0 15 1 1682.874 O14646 O14646 468 482 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 3 1.4896E-05 106.3 2 2 0.72018 1.0191 4.8676 3 Median 0.72816 0.94667 NaN 1 0 Median 0.70448 1.0284 1.2856 2 0 Median 20501000 12572000 7928700 13168000 8376000 4791600 7333200 4196100 3137100 6468 1169 6608 23618;23619;23620;23621 35736;35737;35738;35739;35740 35738 5 KQQAIELTQEEPYSDIIATPGPR RKQAAAKFYSFLVLKKQQAIELTQEEPYSD QEEPYSDIIATPGPRFHII___________ K K Q P R F 2 1 0 1 0 3 3 1 0 3 1 1 0 0 3 1 2 0 1 0 0 0 23 1 2583.318 A0A024R9J0;O60216;B3KUT8;E5RG18;E5RI01;E5RFZ5 A0A024R9J0 605 627 RAD21 Double-strand-break repair protein rad21 homolog yes no 3 0.00018364 56.485 4 0.54818 0.72193 27.347 4 Median 0.54818 0.72193 27.347 4 0 Median NaN NaN NaN 0 0 Median 20071000 12586000 7485400 20071000 12586000 7485400 0 0 0 6469 223 6609 23622;23623;23624;23625 35741;35742;35743;35744;35745;35746;35747 35744 7 KQQNQELQEQLR YKLQMEKAKTHYDAKKQQNQELQEQLRSLE DAKKQQNQELQEQLRSLEQLQKENKELRAE K K Q L R S 0 1 1 0 0 5 2 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1540.7958 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;K4DIE0;Q4LE64;Q14980 Q4LE64 1611 1622 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2;3 0.0001717 123.62 5 1 0.69723 0.90774 39.565 4 Median 0.77151 1.0143 24.811 3 0 Median 0.35719 0.52288 NaN 1 0 Median 31342000 17376000 13967000 27717000 14722000 12995000 3625000 2653800 971250 6470 148;1499 6610 23626;23627;23628;23629;23630;23631 35748;35749;35750;35751;35752;35753;35754;35755;35756 35749 9 KQSPLGFEVHDEITVTR ITKASVSITFDNSDKKQSPLGFEVHDEITV SPLGFEVHDEITVTRQVVIGGRNKYLINGV K K Q T R Q 0 1 0 1 0 1 2 1 1 1 1 1 0 1 1 1 2 0 0 2 0 0 17 1 1955.0112 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q6P712 A0A024R158 89 105 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 3 2.6144E-06 100.04 3 1 0.56042 0.87635 14.061 3 Median 0.63407 0.83434 19.477 2 0 Median 0.56042 0.87635 NaN 1 0 Median 56902000 31823000 25079000 45688000 24913000 20775000 11214000 6910200 4303900 6471 50 6611 23632;23633;23634;23635 35757;35758;35759;35760;35761;35762;35763;35764 35761 8 KQTEQLSLELEVAR TSVTLEMESKLAAEKKQTEQLSLELEVARL KKQTEQLSLELEVARLQLQGLDLSSRSLLG K K Q A R L 1 1 0 0 0 2 3 0 0 0 3 1 0 0 0 1 1 0 0 1 0 0 14 1 1642.889 P49454 P49454 1725 1738 CENPF Centromere protein F yes yes 3 0.00059847 64.52 3 2 1.1375 1.6408 34.564 5 Median 0.77754 1.0003 34.907 3 0 Median 1.2563 1.7915 12.426 2 0 Median 16272000 8270700 8001400 10567000 5943000 4624300 5704900 2327800 3377100 6472 1351 6612 23636;23637;23638;23639;23640 35765;35766;35767;35768;35769 35767 3 KQTLILLTNLLQEEFVK PNISMCLKDSDPFIRKQTLILLTNLLQEEF TLILLTNLLQEEFVKWKGSLFFRFVSTLID R K Q V K W 0 0 1 0 0 2 2 0 0 1 5 2 0 1 0 0 2 0 0 1 0 0 17 1 2029.1823 P42695;G3V1A9;Q96FA6;E9PLE0 P42695 996 1012 NCAPD3 Condensin-2 complex subunit D3 yes no 3 0.00014644 86.772 1 0.68923 0.82602 NaN 1 Median 0.68923 0.82602 NaN 1 0 Median NaN NaN NaN 0 0 Median 2154200 1207800 946410 2154200 1207800 946410 0 0 0 6473 1338 6613 23641 35770 35770 1 KQTTLAFK RLEKKQKREPGTKTKKQTTLAFKPIKKGKK EPGTKTKKQTTLAFKPIKKGKKRNPWSDSE K K Q F K P 1 0 0 0 0 1 0 0 0 0 1 2 0 1 0 0 2 0 0 0 0 0 8 1 935.54402 P11388 P11388 1276 1283 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0045667 82.426 1 2 0.82628 1.28 0.98978 2 Median NaN NaN NaN 0 0 Median 0.82628 1.28 0.98978 2 0 Median 27626000 21840000 5785800 14194000 14194000 0 13432000 7646000 5785800 6474 1256 6614 23642;23643;23644 35771;35772;35773;35774 35771 4 KQTTLAFKPIK RLEKKQKREPGTKTKKQTTLAFKPIKKGKK TKTKKQTTLAFKPIKKGKKRNPWSDSESDR K K Q I K K 1 0 0 0 0 1 0 0 0 1 1 3 0 1 1 0 2 0 0 0 0 0 11 2 1273.7758 P11388 P11388 1276 1286 TOP2A DNA topoisomerase 2-alpha yes yes 3 1.3581E-06 113.38 4 1 0.8168 0.9628 13.572 5 Median 0.83378 0.96154 5.2402 4 0 Median 0.73327 1.2676 NaN 1 0 Median 192150000 104640000 87507000 166250000 89111000 77135000 25900000 15527000 10372000 6475 1256 6615 23645;23646;23647;23648;23649 35775;35776;35777;35778;35779;35780;35781 35780 7 KQTTLAFKPIKK RLEKKQKREPGTKTKKQTTLAFKPIKKGKK KTKKQTTLAFKPIKKGKKRNPWSDSESDRS K K Q K K G 1 0 0 0 0 1 0 0 0 1 1 4 0 1 1 0 2 0 0 0 0 0 12 3 1401.8708 P11388 P11388 1276 1287 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 6.599E-13 160.91 6 0.88153 0.99833 11.91 4 Median 0.88153 0.99833 11.91 4 0 Median NaN NaN NaN 0 0 Median 381630000 204270000 177360000 381630000 204270000 177360000 0 0 0 6476 1256 6616 23650;23651;23652;23653;23654;23655 35782;35783;35784;35785;35786;35787;35788;35789;35790 35787 9 KQVPLNPDLNQTK RKDVSCPIRQVPTGKKQVPLNPDLNQTKPG GKKQVPLNPDLNQTKPGNFPSLAVSSNEFE K K Q T K P 0 0 2 1 0 2 0 0 0 0 2 2 0 0 2 0 1 0 0 1 0 0 13 1 1493.8202 J3QQW9;Q15022 J3QQW9 188 200 SUZ12 Polycomb protein SUZ12 yes no 2 0.0090341 89.9 1 0.99577 1.2029 NaN 1 Median 0.99577 1.2029 NaN 1 0 Median NaN NaN NaN 0 0 Median 1310300 627820 682480 1310300 627820 682480 0 0 0 6477 1143 6617 23656 35791 35791 1 KQVVNIPSFIVR HHARVLIRQRHIRVRKQVVNIPSFIVRLDS RVRKQVVNIPSFIVRLDSQKHIDFSLRSPY R K Q V R L 0 1 1 0 0 1 0 0 0 2 0 1 0 1 1 1 0 0 0 3 0 0 12 1 1398.8347 A0A024R4M0;P46781;A5D904 A0A024R4M0 139 150 RPS9 40S ribosomal protein S9 yes no 2;3 2.9144E-06 90.697 5 2 0.79101 1.0585 23.934 7 Median 0.86392 1.1493 7.1159 5 0 Median 0.45471 0.70939 16.696 2 0 Median 82448000 49612000 32836000 59589000 33738000 25850000 22860000 15874000 6985700 6478 124 6618 23657;23658;23659;23660;23661;23662;23663 35792;35793;35794;35795;35796;35797;35798;35799;35800;35801;35802 35797 11 KRPAPQQIQQVQQQAVQNR SVRPGLAQSGMDQSRKRPAPQQIQQVQQQA PQQIQQVQQQAVQNRNHNAKKKKMADKILP R K R N R N 2 2 1 0 0 8 0 0 0 1 0 1 0 0 2 0 0 0 0 2 0 0 19 2 2244.2199 A0A024R137;A0A024R102;Q96GM5;F8VUB0;B4DF50;F8VZ70;F8VW95 A0A024R137 225 243 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 3;4 3.5612E-17 160.04 3 0.95793 1.1498 NaN 1 Median 0.95793 1.1498 NaN 1 0 Median NaN NaN NaN 0 0 Median 14012000 5272400 8739300 14012000 5272400 8739300 0 0 0 6479 47 6619 23664;23665;23666 35803;35804;35805 35803 3 KRPEDTAASALQEGQTQR EATAAPHGKRKRKKKKRPEDTAASALQEGQ EDTAASALQEGQTQRQPGSPMYRREGQAQL K K R Q R Q 3 2 0 1 0 3 2 1 0 0 1 1 0 0 1 1 2 0 0 0 0 0 18 2 1984.9926 A0A024R8V6;Q9P275;A0A075B784 A0A024R8V6 850 867 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 3 7.6265E-09 85.087 2 0.88119 1.0689 30.286 2 Median 0.88119 1.0689 30.286 2 0 Median NaN NaN NaN 0 0 Median 12605000 6797200 5808200 12605000 6797200 5808200 0 0 0 6480 205 6620 23667;23668 35806;35807;35808;35809 35808 4 KRPETVATQFK PIMSQCFDRSELSDKKRPETVATQFKMSLL LSDKKRPETVATQFKMSLLQLVEILQSKEP K K R F K M 1 1 0 0 0 1 1 0 0 0 0 2 0 1 1 0 2 0 0 1 0 0 11 2 1303.7248 F5H6E2;B7Z3E5;O00159;D3DTH7;B7Z9C0;A1L180 F5H6E2 571 581 MYO1C Unconventional myosin-Ic yes no 2;3 5.0893E-05 122.7 6 0.61798 0.76601 29.288 4 Median 0.61798 0.76601 29.288 4 0 Median NaN NaN NaN 0 0 Median 87226000 52216000 35009000 87226000 52216000 35009000 0 0 0 6481 905 6621 23669;23670;23671;23672;23673;23674 35810;35811;35812;35813;35814;35815 35810 6 KRPLALQR SGADDGSVALWGLSKKRPLALQREAHGLRG ALWGLSKKRPLALQREAHGLRGEPGLEQPF K K R Q R E 1 2 0 0 0 1 0 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 8 2 980.62433 O43818 O43818 355 362 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 3 0.024328 69.198 3 0.7833 1.0274 11.267 3 Median 0.7833 1.0274 11.267 3 0 Median NaN NaN NaN 0 0 Median 123160000 68427000 54736000 123160000 68427000 54736000 0 0 0 6482 1188 6622 23675;23676;23677 35816;35817;35818;35819 35819 4 KRPNNLVIGR KKSDCSLFMFGSHNKKRPNNLVIGRMYDYH GSHNKKRPNNLVIGRMYDYHVLDMIELGIE K K R G R M 0 2 2 0 0 0 0 1 0 1 1 1 0 0 1 0 0 0 0 1 0 0 10 2 1165.7044 A8K800;Q9H7B2;Q5VXN0;B4DWS5 A8K800 98 107 RPF2 Ribosome production factor 2 homolog yes no 3 0.00030417 102.07 4 0.74193 0.90744 9.0427 4 Median 0.74193 0.90744 9.0427 4 0 Median NaN NaN NaN 0 0 Median 340620000 198460000 142170000 340620000 198460000 142170000 0 0 0 6483 637 6623 23678;23679;23680;23681 35820;35821;35822;35823;35824;35825;35826;35827 35824 8 KSDFEFTLK VIPRVIQLLFKEIDKKSDFEFTLKVSYLEI FKEIDKKSDFEFTLKVSYLEIYNEEILDLL K K S L K V 0 0 0 1 0 0 1 0 0 0 1 2 0 2 0 1 1 0 0 0 0 0 9 1 1113.5706 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 132 140 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 4.7249E-05 147.73 3 2 0.69841 1.0039 5.5133 4 Median 0.82342 1.0131 9.3561 2 0 Median 0.62859 1.0039 1.6826 2 0 Median 88207000 51326000 36881000 53036000 29007000 24030000 35170000 22319000 12852000 6484 1216 6624 23682;23683;23684;23685;23686 35828;35829;35830;35831;35832;35833 35829 6 KSDIDEIVLVGGSTR TMKPVQKVLEDSDLKKSDIDEIVLVGGSTR KSDIDEIVLVGGSTRIPKIQQLVKEFFNGK K K S T R I 0 1 0 2 0 0 1 2 0 2 1 1 0 0 0 2 1 0 0 2 0 0 15 1 1587.8468 V9HWB4;P11021 V9HWB4 353 367 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 3 0.0034755 42.338 2 0.77145 1.1684 NaN 1 Median NaN NaN NaN 0 0 Median 0.77145 1.1684 NaN 1 0 Median 9273900 6719100 2554800 0 0 0 9273900 6719100 2554800 6485 1252 6625 23687;23688 35834;35835;35836 35836 3 KSDLGVHLR VAKFHCPHCDTVIARKSDLGVHLRKQHSYI DTVIARKSDLGVHLRKQHSYIEQGKKCRYC R K S L R K 0 1 0 1 0 0 0 1 1 0 2 1 0 0 0 1 0 0 0 1 0 0 9 1 1023.5825 P49711 P49711 449 457 CTCF Transcriptional repressor CTCF yes yes 3 0.039537 20.739 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3631700 3631700 0 3631700 3631700 0 0 0 0 6486 1354 6626 23689 35837 35837 1 KSDPVVSYR CLKDLEEDHACIPIKKSDPVVSYRETVSEE ACIPIKKSDPVVSYRETVSEESNVLCLSKS K K S Y R E 0 1 0 1 0 0 0 0 0 0 0 1 0 0 1 2 0 0 1 2 0 0 9 1 1049.5506 P13639;Q8TA90;B4DPU3 P13639 572 580 EEF2 Elongation factor 2 yes no 2 0.002033 110.41 2 1 1.443 1.8759 126.99 3 Median 0.91729 1.2119 61.782 2 0 Median 6.1366 9.5601 NaN 1 0 Median 32749000 14790000 17959000 25507000 13777000 11730000 7241600 1012400 6229200 6487 1264 6627 23690;23691;23692 35838;35839;35840 35839 3 KSDVEAIFSK NSRVFIGNLNTLVVKKSDVEAIFSKYGKIV TLVVKKSDVEAIFSKYGKIVGCSVHKGFAF K K S S K Y 1 0 0 1 0 0 1 0 0 1 0 2 0 1 0 2 0 0 0 1 0 0 10 1 1122.5921 B2R5W2;G3V4C1;G3V4W0;B4DY08;B3KX96;B2R603;G3V2Q1;P07910;G3V576;A8K9A4;D3DPI2;G3V5X6;G3V3K6;G3V251;G3V555;G3V575;Q6PKD2;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8;B4DMJ1;B4DSU6;G3V4M8;Q569J8;G3V2H6 B2R5W2 30 39 HNRNPC;hCG_1641229;HNRPCL1;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2;HNRPC Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 yes no 2 1.999E-11 168.05 4 2 0.62863 0.76785 19.52 6 Median 0.6279 0.7616 0.90743 4 0 Median 0.68818 1.1116 0.65228 2 0 Median 970910000 575750000 395170000 810660000 482470000 328190000 160260000 93276000 66981000 6488 694 6628 23693;23694;23695;23696;23697;23698 35841;35842;35843;35844;35845;35846;35847;35848 35844 8 KSDVETIFSK NSRVFIGNLNTALVKKSDVETIFSKYGRVA TALVKKSDVETIFSKYGRVAGCSVHKGYAF K K S S K Y 0 0 0 1 0 0 1 0 0 1 0 2 0 1 0 2 1 0 0 1 0 0 10 1 1152.6027 A8K4T9;Q53GL6;Q9UKM9;Q5QPL9;Q5QPM1;Q5QPM2;B4DSJ1 A8K4T9 35 44 RALY RNA-binding protein Raly yes no 2 1.1455E-06 144.55 3 0.74534 0.91209 10.615 3 Median 0.74534 0.91209 10.615 3 0 Median NaN NaN NaN 0 0 Median 55706000 32007000 23698000 55706000 32007000 23698000 0 0 0 6489 608 6629 23699;23700;23701 35849;35850;35851;35852;35853 35849 5 KSEIEYYAMLAK KAKLVILANNCPALRKSEIEYYAMLAKTGV ALRKSEIEYYAMLAKTGVHHYSGNNIELGT R K S A K T 2 0 0 0 0 0 2 0 0 1 1 2 1 0 0 1 0 0 2 0 0 0 12 1 1444.7272 E5RI99;A0A024R9D3;P62888 E5RI99 57 68 RPL30 60S ribosomal protein L30 yes no 2 1.1637E-07 138.42 5 1 0.83296 1.0199 31.017 5 Median 0.83796 1.0348 14.581 4 0 Median 0.38749 0.57341 NaN 1 0 Median 82350000 47912000 34438000 77849000 44601000 33247000 4501200 3310400 1190800 6490 219 6630;6631 23702;23703;23704;23705;23706;23707 35854;35855;35856;35857;35858;35859;35860 35858 94 6 KSESEVEEAAAIIAQRPDNPR IFGDHRDEEEETHMKKSESEVEEAAAIIAQ EEAAAIIAQRPDNPREFFKQQERVASASAG K K S P R E 4 2 1 1 0 1 4 0 0 2 0 1 0 0 2 2 0 0 0 1 0 0 21 2 2309.1612 Q16643;D6R9W4;B3KSQ7;B7Z2Z0;D6R9Q9 Q16643 271 291 DBN1 Drebrin yes no 3 8.2061E-13 118.05 4 1 0.77371 0.94097 65.632 5 Median 0.74309 0.90649 5.4207 4 0 Median 2.3442 3.8971 NaN 1 0 Median 96461000 50397000 46065000 85430000 47046000 38384000 11031000 3351200 7680200 6491 1523 6632 23708;23709;23710;23711;23712 35861;35862;35863;35864;35865;35866;35867;35868;35869 35865 9 KSNFSNSADDIK GENNKPREKSESNKRKSNFSNSADDIKSKK NKRKSNFSNSADDIKSKKKREQSNDIARGF R K S I K S 1 0 2 2 0 0 0 0 0 1 0 2 0 1 0 3 0 0 0 0 0 0 12 1 1324.6259 V9HWG0;P45973;Q6I9T7 V9HWG0 91 102 HEL25;CBX5 Chromobox protein homolog 5 yes no 2 0.0024674 68.893 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1156000 1156000 0 1156000 1156000 0 0 0 0 6492 1341 6633 23713 35870 35870 1 KSSGEIVYCGQVFEK KSRFWYFVSQLKKMKKSSGEIVYCGQVFEK KSSGEIVYCGQVFEKSPLRVKNFGIWLRYD K K S E K S 0 0 0 0 1 1 2 2 0 1 0 2 0 1 0 2 0 0 1 2 0 0 15 1 1729.8345 Q02543;M0R3D6;M0R1A7;B2R4C0;M0R0P7;B4DM94;M0R117;B4DM74;B4DUV3;Q53HD3 Q02543 56 70 RPL18A 60S ribosomal protein L18a yes no 3 5.1786E-05 58.814 2 0.86976 1.0786 21.885 2 Median 0.86976 1.0786 21.885 2 0 Median NaN NaN NaN 0 0 Median 26736000 16435000 10301000 26736000 16435000 10301000 0 0 0 6493 1436 6634 23714;23715 35871;35872;35873 35872 3 KTCTTVAFTQVNSEDK CIIKGKARLGRLVHRKTCTTVAFTQVNSED TCTTVAFTQVNSEDKGALAKLVEAIRTNYN R K T D K G 1 0 1 1 1 1 1 0 0 0 0 2 0 1 0 1 4 0 0 2 0 0 16 1 1827.8673 P62424;Q9BY74;Q5T8U2 P62424 197 212 RPL7A;RP-L7a 60S ribosomal protein L7a yes no 2;3 0.00011971 101.01 5 1 0.7716 0.93882 22.256 4 Median 0.7716 0.93882 22.256 4 0 Median NaN NaN NaN 0 0 Median 42597000 24279000 18318000 41138000 22820000 18318000 1459100 1459100 0 6494 1411 6635 23716;23717;23718;23719;23720;23721 35874;35875;35876;35877;35878;35879;35880;35881;35882 35876 9 KTDAPQPDVKEEEEEKEEEK FCCSGKKQTSGMEYKKTDAPQPDVKEEEEE QPDVKEEEEEKEEEKDKGDEEEEGEEKLEE K K T E K D 1 0 0 2 0 1 8 0 0 0 0 4 0 0 2 0 1 0 0 1 0 0 20 3 2386.1024 P27824 P27824 516 535 CANX Calnexin yes yes 3;4 5.6613E-32 174.65 3 0.5764 0.59408 16.506 3 Plateau 0.5764 0.59408 16.506 3 0 Plateau NaN NaN NaN 0 0 Median 8154600 4966800 3187900 8154600 4966800 3187900 0 0 0 6495 1303 6636 23722;23723;23724 35883;35884;35885 35884 2 KTEELEEESFPER WEGLVYAPPGKEKQRKTEELEEESFPERSK QRKTEELEEESFPERSKKEDRGKRSEGGHR R K T E R S 0 1 0 0 0 0 6 0 0 0 1 1 0 1 1 1 1 0 0 0 0 0 13 1 1621.7471 Q9Y2W1 Q9Y2W1 486 498 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 3 0.0065542 60.968 2 1 0.52412 0.71627 17.763 3 Median 0.50985 0.68243 6.8458 2 0 Median 0.59635 0.91753 NaN 1 0 Median 20281000 12917000 7363600 14930000 9958600 4971500 5350900 2958800 2392200 6496 1809 6637 23725;23726;23727 35886;35887;35888 35886 3 KTEIISEVNHLDNDK NESKVNKKLRQKVNRKTEIISEVNHLDNDK KTEIISEVNHLDNDKSIEYTVKSHSLFLTQ R K T D K S 0 0 2 2 0 0 2 0 1 2 1 2 0 0 0 1 1 0 0 1 0 0 15 1 1753.8846 Q562F6;B7Z7S9 Q562F6 719 733 SGOL2 Shugoshin-like 2 yes no 3 0.0027086 82.483 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2774000 2774000 0 2774000 2774000 0 0 0 0 6497 1546 6638 23728 35889 35889 1 KTEPATGFIDGDLIESFLDISRPK GKIEHSFWRSFHTERKTEPATGFIDGDLIE DGDLIESFLDISRPKMQEVVANLQYDDGSG R K T P K M 1 1 0 3 0 0 2 2 0 3 2 2 0 2 2 2 2 0 0 0 0 0 24 2 2648.3697 Q16531;B4DSA8;B4DZP5 Q16531 1081 1104 DDB1 DNA damage-binding protein 1 yes no 3;4 6.5472E-20 115.77 9 0.8163 1.0297 39.326 7 Median 0.8163 1.0297 39.326 7 0 Median NaN NaN NaN 0 0 Median 125360000 64928000 60428000 125360000 64928000 60428000 0 0 0 6498 1520 6639 23729;23730;23731;23732;23733;23734;23735;23736;23737 35890;35891;35892;35893;35894;35895;35896;35897;35898;35899;35900;35901 35897 9 KTEYISTEFNR SKRSQQHAKVVPWMRKTEYISTEFNRYGIS PWMRKTEYISTEFNRYGISNEKPEVKIGVS R K T N R Y 0 1 1 0 0 0 2 0 0 1 0 1 0 1 0 1 2 0 1 0 0 0 11 1 1386.6779 A0A024R0H6;Q8N7H5;B4DGJ5 A0A024R0H6 133 143 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 0.0013731 105.4 2 0.87327 1.1512 26.876 2 Median 0.87327 1.1512 26.876 2 0 Median NaN NaN NaN 0 0 Median 13540000 8245700 5293900 13540000 8245700 5293900 0 0 0 6499 36 6640 23738;23739 35902;35903;35904 35904 3 KTGNFQVTELGR AALMLDKNNLVKYDKKTGNFQVTELGRIAS YDKKTGNFQVTELGRIASHYYITNDTVQTY K K T G R I 0 1 1 0 0 1 1 2 0 0 1 1 0 1 0 0 2 0 0 1 0 0 12 1 1348.7099 O75643;A4FU77;Q9H8B9 O75643 975 986 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2;3 0.00024311 92.866 4 0.53796 0.71546 13.316 4 Median 0.53796 0.71546 13.316 4 0 Median NaN NaN NaN 0 0 Median 34309000 22391000 11919000 34309000 22391000 11919000 0 0 0 6500 1206 6641 23740;23741;23742;23743 35905;35906;35907;35908;35909;35910 35908 6 KTIEESEETLK QSSYHKQQEELDALKKTIEESEETLKNTKE DALKKTIEESEETLKNTKEIQRKAEEKYEV K K T L K N 0 0 0 0 0 0 4 0 0 1 1 2 0 0 0 1 2 0 0 0 0 0 11 1 1305.6664 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;B3KM27 A0A024R158 750 760 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 2.4845E-56 246.08 2 2 0.64519 0.93679 11.232 4 Median 0.69383 0.85108 11.298 2 0 Median 0.6242 0.98814 5.2762 2 0 Median 44372000 25947000 18425000 20902000 11680000 9222000 23470000 14267000 9202900 6501 50 6642 23744;23745;23746;23747 35911;35912;35913;35914;35915;35916;35917 35911 7 KTPESKPTILVK TNMGWADAMAKVLNKKTPESKPTILVKNKK LNKKTPESKPTILVKNKKLEKEKEKLKQER K K T V K N 0 0 0 0 0 0 1 0 0 1 1 3 0 0 2 1 2 0 0 1 0 0 12 2 1339.8075 Q9Y3B9;A8K201;A0JLN3 Q9Y3B9 103 114 RRP15 RRP15-like protein yes no 2;3 0.0012519 105.25 4 2 0.68476 0.77461 12.728 5 Median 0.76061 0.89421 13.582 3 0 Median 0.43843 0.76378 0.51692 2 0 Median 286210000 168710000 117490000 196310000 106860000 89448000 89898000 61851000 28047000 6502 1816 6643 23748;23749;23750;23751;23752;23753 35918;35919;35920;35921;35922;35923;35924;35925 35925 8 KTPETIPLTEDVLITLGK MQVKCLTAELSQWQKKTPETIPLTEDVLIT ETIPLTEDVLITLGKEEFQKLRQDLEMVLS K K T G K E 0 0 0 1 0 0 2 1 0 2 3 2 0 0 2 0 4 0 0 1 0 0 18 1 1967.1191 D6RHD3;Q9BS16;D6RC76;D6RJF0;D6RBN6;D6RAX0 D6RHD3 47 64 CENPK Centromere protein K yes no 3 4.9112E-09 87.228 3 2 0.76871 0.97225 25.466 3 Median 0.76871 0.97225 25.466 3 0 Median NaN NaN NaN 0 0 Median 35864000 22821000 13043000 27043000 14000000 13043000 8821400 8821400 0 6503 996 6644 23754;23755;23756;23757;23758 35926;35927;35928;35929;35930;35931;35932;35933;35934 35929 9 KTPPAPSPFDLPELK KILKEMCDVEQVLSKKTPPAPSPFDLPELK KTPPAPSPFDLPELKHVATEYQENKAPGKK K K T L K H 1 0 0 1 0 0 1 0 0 0 2 2 0 1 5 1 1 0 0 0 0 0 15 1 1635.8872 Q59HG1;O95239;B3KNC0 Q59HG1 1183 1197 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2;3 1.899E-05 75.376 4 3 0.68616 0.85069 16.64 7 Median 0.81067 0.99622 17.433 4 0 Median 0.51586 0.82575 2.9862 3 0 Median 209970000 119820000 90145000 104990000 49124000 55865000 104980000 70700000 34280000 6504 1216 6645 23759;23760;23761;23762;23763;23764;23765 35935;35936;35937;35938;35939;35940;35941;35942;35943;35944;35945;35946;35947;35948;35949;35950;35951 35949 17 KTPYEEQLHR SFPSWSEDSTFVSSKKTPYEEQLHRCEDER FVSSKKTPYEEQLHRCEDERFELDVVLETN K K T H R C 0 1 0 0 0 1 2 0 1 0 1 1 0 0 1 0 1 0 1 0 0 0 10 1 1299.6571 O75182;M0QYC5;B7Z392 O75182 477 486 SIN3B Paired amphipathic helix protein Sin3b yes no 3 0.033242 24.855 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6505 1197 6646 23766 35952 35952 1 KTQGFILNTK ETELELQMKLWMYNKKTQGFILNTKINMPH WMYNKKTQGFILNTKINMPHEDCITALCFC K K T T K I 0 0 1 0 0 1 0 1 0 1 1 2 0 1 0 0 2 0 0 0 0 0 10 1 1148.6554 A8K330;Q8IWA0 A8K330 427 436 WDR75 WD repeat-containing protein 75 yes no 2 0.0031162 69.672 1 2 0.98136 1.2118 12.616 3 Plateau 0.98136 1.2118 NaN 1 0 Median 0.64253 1.0046 9.1623 2 0 Median 25622000 14715000 10907000 10292000 5429100 4862500 15330000 9285800 6044600 6506 588 6647 23767;23768;23769 35953;35954;35955;35956 35953 4 KTQMAEVLPSPR EQVGLPGKGGKAKGKKTQMAEVLPSPRGQR KGKKTQMAEVLPSPRGQRVIPRITIEMKAE K K T P R G 1 1 0 0 0 1 1 0 0 0 1 1 1 0 2 1 1 0 0 1 0 0 12 1 1355.7231 P11388 P11388 1204 1215 TOP2A DNA topoisomerase 2-alpha yes yes 3 0.008636 43.405 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3191400 3191400 0 0 0 0 3191400 3191400 0 6507 1256 6648 23770 35957 35957 511 1 KTSFDQDSDVDIFPSDFPTEPPSLPR NPGRKTSKTTSKKPKKTSFDQDSDVDIFPS IFPSDFPTEPPSLPRTGRARKEVKYFAESD K K T P R T 0 1 0 5 0 1 1 0 0 1 1 1 0 3 5 4 2 0 0 1 0 0 26 1 2936.3716 Q71UH4;Q02880;Q59H80;B4DLV2;Q8WTY5;B7ZB27 Q71UH4 1546 1571 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 3 8.4911E-06 72.654 4 1 0.56619 0.73544 34.982 5 Median 0.6189 0.79821 34.426 4 0 Median 0.35129 0.57696 NaN 1 0 Median 57910000 33847000 24063000 41012000 21510000 19502000 16898000 12337000 4560500 6508 1437 6649 23771;23772;23773;23774;23775 35958;35959;35960;35961;35962;35963;35964;35965 35959 8 KTTDTASVQNEAKLDEILK KPTANKKCDLISIPKKTTDTASVQNEAKLD TASVQNEAKLDEILKEIKSIKDTICNQDER K K T L K E 2 0 1 2 0 1 2 0 0 1 2 3 0 0 0 1 3 0 0 1 0 0 19 2 2103.1059 B4DMH3;Q53G58;B3KN06;A0A024RBI5;Q59EA2;Q9ULV4;B7Z9V0;B4E3S0;H0YHL7 B4DMH3 391 409 CORO1C Coronin;Coronin-1C yes no 3 0.00011132 119.48 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2028500 2028500 0 2028500 2028500 0 0 0 0 6509 274 6650 23776 35966 35966 1 KTTEEQVQASTPCPR GEDGALDDEGHSGIKKTTEEQVQASTPCPR KTTEEQVQASTPCPRTEMASARIGDEYAED K K T P R T 1 1 0 0 1 2 2 0 0 0 0 1 0 0 2 1 3 0 0 1 0 0 15 1 1730.8257 B2RDN4;Q14137;A8K3R2 B2RDN4 96 110 BOP1 Ribosome biogenesis protein BOP1 yes no 2;3 1.2654E-13 157.33 3 0.66036 0.852 NaN 1 Median 0.66036 0.852 NaN 1 0 Median NaN NaN NaN 0 0 Median 11041000 4831200 6209600 11041000 4831200 6209600 0 0 0 6510 738 6651 23777;23778;23779 35967;35968;35969 35968 3 KTTEVTGTGLGR SPLASPADGVKSKPRKTTEVTGTGLGRNRK KPRKTTEVTGTGLGRNRKKLSSYPKQILRR R K T G R N 0 1 0 0 0 0 1 3 0 0 1 1 0 0 0 0 4 0 0 1 0 0 12 1 1218.6568 Q8WYP5 Q8WYP5 2237 2248 AHCTF1 Protein ELYS yes yes 2 0.0078685 83.862 1 0.87217 1.1851 NaN 1 Median 0.87217 1.1851 NaN 1 0 Median NaN NaN NaN 0 0 Median 3163900 1449500 1714300 3163900 1449500 1714300 0 0 0 6511 1670 6652 23780 35970 35970 1 KTTHFVEGGDAGNREDQINR LWPFKLSSPRGGMKKKTTHFVEGGDAGNRE VEGGDAGNREDQINRLIRRMN_________ K K T N R L 1 2 2 2 0 1 2 3 1 1 0 1 0 1 0 0 2 0 0 1 0 0 20 2 2243.0679 A0A024R814;P18124;A8MUD9;O95036 A0A024R814 234 253 RPL7;WUGSC:H_RG054D04.1 60S ribosomal protein L7 yes no 3;4 2.7876E-10 98.077 7 0.70412 0.89495 11.573 7 Median 0.70412 0.89495 11.573 7 0 Median NaN NaN NaN 0 0 Median 195720000 111910000 83813000 195720000 111910000 83813000 0 0 0 6512 189 6653 23781;23782;23783;23784;23785;23786;23787 35971;35972;35973;35974;35975;35976;35977;35978;35979;35980;35981;35982;35983;35984 35978 14 KTVTAMDVVYALK NVIRDAVTYTEHAKRKTVTAMDVVYALKRQ KRKTVTAMDVVYALKRQGRTLYGFGG____ R K T L K R 2 0 0 1 0 0 0 0 0 0 1 2 1 0 0 0 2 0 1 3 0 0 13 1 1437.7901 B2R4R0;P62805 B2R4R0 80 92 HIST1H4H;HIST1H4A Histone H4 yes no 2;3 1.5329E-05 122.34 7 2 0.70155 0.86756 31.257 7 Median 0.71864 0.89141 28.893 6 0 Median 0.37729 0.60973 NaN 1 0 Median 111680000 65518000 46159000 77011000 38910000 38101000 34666000 26608000 8058600 6513 686 6654;6655 23788;23789;23790;23791;23792;23793;23794;23795;23796 35985;35986;35987;35988;35989;35990;35991;35992;35993;35994;35995;35996 35993 237 12 KTVTAMDVVYALKR NVIRDAVTYTEHAKRKTVTAMDVVYALKRQ RKTVTAMDVVYALKRQGRTLYGFGG_____ R K T K R Q 2 1 0 1 0 0 0 0 0 0 1 2 1 0 0 0 2 0 1 3 0 0 14 2 1593.8912 B2R4R0;P62805 B2R4R0 80 93 HIST1H4H;HIST1H4A Histone H4 yes no 3 0.00016525 92.269 9 5 0.72872 0.86793 29.737 13 Median 0.72872 0.86793 11.011 9 0 Median 0.54452 0.9446 55.868 4 0 Median 168970000 101840000 67134000 119580000 68719000 50861000 49390000 33117000 16273000 6514 686 6656;6657 23797;23798;23799;23800;23801;23802;23803;23804;23805;23806;23807;23808;23809;23810 35997;35998;35999;36000;36001;36002;36003;36004;36005;36006;36007;36008;36009;36010;36011;36012;36013;36014;36015;36016;36017;36018 36018 237 20 KVAPAPAVVK ______________________________ KAKGKKVAPAPAVVKKQEAKKVVNPLFEKR K K V V K K 3 0 0 0 0 0 0 0 0 0 0 2 0 0 2 0 0 0 0 3 0 0 10 1 978.6226 P62424;Q5T8U3 P62424 11 20 RPL7A 60S ribosomal protein L7a yes no 2 6.0636E-05 107.01 4 2 0.80107 0.97876 9.3773 6 Median 0.81029 0.99176 1.8796 4 0 Median 0.52791 0.84234 8.3864 2 0 Median 301590000 170960000 130630000 268120000 148900000 119210000 33469000 22057000 11412000 6515 1411 6658 23811;23812;23813;23814;23815;23816 36019;36020;36021;36022;36023;36024;36025;36026;36027;36028;36029;36030 36023 12 KVDEAIALFQK EADEAKLQQTEAELRKVDEAIALFQKML__ AELRKVDEAIALFQKML_____________ R K V Q K M 2 0 0 1 0 1 1 0 0 1 1 2 0 1 0 0 0 0 0 1 0 0 11 1 1260.7078 A0A024RCN6;P26640;A0A140T936;B4DT32 A0A024RCN6 1252 1262 VARS Valine--tRNA ligase yes no 2 1.1449E-05 141.1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2143300 2143300 0 2143300 2143300 0 0 0 0 6516 297 6659 23817 36031 36031 1 KVDVEEEFFALR DTPTSSKPQSKRSLRKVDVEEEFFALRKRT SLRKVDVEEEFFALRKRTPSAGKAMHTPKP R K V L R K 1 1 0 1 0 0 3 0 0 0 1 1 0 2 0 0 0 0 0 2 0 0 12 1 1480.7562 P46013 P46013 1517 1528 MKI67 Antigen KI-67 yes yes 2;3 2.7406E-10 150.09 6 4 0.81799 1.1 10.045 10 Median 0.8369 1.1 8.2569 6 0 Median 0.80201 1.1956 13.131 4 0 Linear 319090000 176150000 142940000 155790000 79592000 76195000 163300000 96559000 66744000 6517 1342 6660 23818;23819;23820;23821;23822;23823;23824;23825;23826;23827 36032;36033;36034;36035;36036;36037;36038;36039;36040;36041;36042;36043;36044;36045;36046;36047;36048 36045 17 KVDVEEEFFALRK DTPTSSKPQSKRSLRKVDVEEEFFALRKRT LRKVDVEEEFFALRKRTPSAGKAMHTPKPA R K V R K R 1 1 0 1 0 0 3 0 0 0 1 2 0 2 0 0 0 0 0 2 0 0 13 2 1608.8512 P46013 P46013 1517 1529 MKI67 Antigen KI-67 yes yes 3 1.6168E-10 134.06 4 2 0.91109 1.1098 27.663 6 Median 0.8717 1.0811 5.1037 4 0 Median 1.0071 1.8144 4.3982 2 0 Median 537540000 280410000 257130000 359330000 190470000 168870000 178210000 89943000 88266000 6518 1342 6661 23828;23829;23830;23831;23832;23833 36049;36050;36051;36052;36053;36054;36055;36056;36057;36058;36059;36060;36061 36054 13 KVEAPETNIDK SDPPLKRSLAQRLGKKVEAPETNIDKTPKK RLGKKVEAPETNIDKTPKKAQVSKSLKERL K K V D K T 1 0 1 1 0 0 2 0 0 1 0 2 0 0 1 0 1 0 0 1 0 0 11 1 1242.6456 B4DLG2;O75152;E9PQ61;E9PBY7;Q0D2N5 B4DLG2 256 266 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 2 7.4252E-07 143 2 0.56288 0.69508 25.027 2 Median 0.56288 0.69508 25.027 2 0 Median NaN NaN NaN 0 0 Median 17855000 12912000 4942500 17855000 12912000 4942500 0 0 0 6519 826 6662 23834;23835 36062;36063;36064 36062 3 KVEAQLQELQVK KVLLQGKGDSEHKRKKVEAQLQELQVKFNE KRKKVEAQLQELQVKFNEGERVRTELADKV K K V V K F 1 0 0 0 0 3 2 0 0 0 2 2 0 0 0 0 0 0 0 2 0 0 12 1 1411.8035 A0A024R1N1;P35579;Q86XU5;A0A0U4BW16 A0A024R1N1 1249 1260 MYH9 Myosin-9 no no 2;3 2.3434E-25 205.12 8 1 0.9884 1.2109 5.8464 8 Median 0.9884 1.2109 5.8464 8 0 Median NaN NaN NaN 0 0 Median 369170000 184750000 184420000 365140000 184750000 180390000 4034800 0 4034800 6520 61;490 6663 23836;23837;23838;23839;23840;23841;23842;23843;23844 36065;36066;36067;36068;36069;36070;36071;36072;36073;36074;36075;36076;36077;36078 36066 14 KVEDLFLTFAK AARKKKLLEAQSHFRKVEDLFLTFAKKASA SHFRKVEDLFLTFAKKASAFNSWFENAEED R K V A K K 1 0 0 1 0 0 1 0 0 0 2 2 0 2 0 0 1 0 0 1 0 0 11 1 1309.7282 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16 Q13813 2088 2098 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 1.7587E-11 178.53 3 0.82402 1.0261 5.0988 3 Median 0.82402 1.0261 5.0988 3 0 Median NaN NaN NaN 0 0 Median 41687000 22606000 19081000 41687000 22606000 19081000 0 0 0 6521 1476 6664 23845;23846;23847 36079;36080;36081;36082;36083 36080 5 KVEEAEPEEFVVEK TTLQKMGKKQNGKSKKVEEAEPEEFVVEKV KKVEEAEPEEFVVEKVLDRRVVNGKVEYFL K K V E K V 1 0 0 0 0 0 6 0 0 0 0 2 0 1 1 0 0 0 0 3 0 0 14 1 1660.8196 A4D177;Q13185;C9JMM0;B8ZZ43;S4R2Y4 A4D177 21 34 CBX3 Chromobox protein homolog 3 yes no 2;3 3.3799E-87 267.23 8 4 0.74805 0.97067 3.9206 12 Median 0.76609 0.93535 3.9501 8 0 Median 0.60506 0.97699 1.8509 4 0 Median 2289800000 1353200000 936590000 1285100000 718890000 566250000 1004700000 634310000 370340000 6522 547 6665 23848;23849;23850;23851;23852;23853;23854;23855;23856;23857;23858;23859 36084;36085;36086;36087;36088;36089;36090;36091;36092;36093;36094;36095;36096;36097;36098;36099;36100;36101;36102;36103;36104;36105 36085 22 KVEEEEDESALK SEYCRISNLIVLHLRKVEEEEDESALKRSE HLRKVEEEEDESALKRSELVNWYLKEIESE R K V L K R 1 0 0 1 0 0 5 0 0 0 1 2 0 0 0 1 0 0 0 1 0 0 12 1 1404.662 Q4ZG57;Q14566;B4DRF6 Q4ZG57 697 708 MCM6 DNA replication licensing factor MCM6 yes no 2 3.2129E-25 203.03 4 1 0.60911 0.7321 12.703 4 Median 0.60911 0.7321 12.703 4 0 Median NaN NaN NaN 0 0 Median 15484000 8219900 7264300 13808000 8219900 5588100 1676200 0 1676200 6523 1488 6666 23860;23861;23862;23863;23864 36106;36107;36108;36109;36110;36111;36112;36113 36106 8 KVEEEGSPGDPDHEASTQGR RFKPSSLPHPLEGSRKVEEEGSPGDPDHEA GSPGDPDHEASTQGRTCGPEHSKGGGRVDE R K V G R T 1 1 0 2 0 1 4 3 1 0 0 1 0 0 2 2 1 0 0 1 0 0 20 1 2123.9356 Q6PK21;A0A0A0MRN5;Q05BV5;Q9NZT2;B3KMQ6;V9H0E3 Q6PK21 165 184 OGFR Opioid growth factor receptor yes no 3 0.00030394 67.644 3 1 0.38128 0.49687 126.76 3 Median 0.33664 0.43643 18.342 2 0 Median 2.7986 3.8764 NaN 1 0 Median 7640600 5781700 1858900 6919700 5590400 1329300 720890 191340 529560 6524 389 6667 23865;23866;23867;23868 36114;36115;36116;36117;36118;36119 36115 6 KVEELEGEITTLNHK ALMASLDAEKAQGQKKVEELEGEITTLNHK KVEELEGEITTLNHKLQDASAEVERLRREN K K V H K L 0 0 1 0 0 0 4 1 1 1 2 2 0 0 0 0 2 0 0 1 0 0 15 1 1738.9101 A0A024R7H5;B4E0Z6;Q10589 A0A024R7H5 112 126 BST2 Bone marrow stromal antigen 2 yes no 3 9.0058E-05 45.083 1 2 1.9211 3.009 114.67 3 Median 0.35692 0.44216 NaN 1 0 Median 2.0628 3.2116 9.2174 2 0 Median 27567000 13131000 14437000 11629000 7463100 4165700 15939000 5667500 10271000 6525 177 6668 23869;23870;23871 36120;36121;36122 36120 3 KVEELQACVETAR TSVTQAQREKAELSRKVEELQACVETARQE SRKVEELQACVETARQEQHEAQAQVAELEL R K V A R Q 2 1 0 0 1 1 3 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 13 1 1531.7664 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 651 663 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 4.2573E-06 127.78 3 0.59621 0.79031 4.4651 3 Median 0.59621 0.79031 4.4651 3 0 Median NaN NaN NaN 0 0 Median 38308000 21807000 16501000 38308000 21807000 16501000 0 0 0 6526 148;1499;590 6669 23872;23873;23874 36123;36124;36125 36123 3 KVEETQDEDDDELIFVGEISSSK LFMECEEEELEPWQKKVEETQDEDDDELIF DDDELIFVGEISSSKPAISNILNRGHSSSS K K V S K P 0 0 0 4 0 1 5 1 0 2 1 2 0 1 0 3 1 0 0 2 0 0 23 1 2611.2025 Q8ND82;Q9UJJ2 Q8ND82 33 55 ZNF280C Zinc finger protein 280C yes no 3 1.5371E-06 87.72 4 0.81579 0.99975 25.353 4 Median 0.81579 0.99975 25.353 4 0 Median NaN NaN NaN 0 0 Median 39952000 27135000 12817000 39952000 27135000 12817000 0 0 0 6527 1652 6670 23875;23876;23877;23878 36126;36127;36128;36129;36130;36131;36132 36127 7 KVEEVLEEEEEEYVVEK ______________________________ EEVLEEEEEEYVVEKVLDRRVVKGKVEYLL K K V E K V 0 0 0 0 0 0 9 0 0 0 1 2 0 0 0 0 0 0 1 4 0 0 17 1 2108.0049 J3KS05;Q6IBN6;P83916;B5MD17;K7ELA4;C9JWS9 J3KS05 9 25 CBX1 Chromobox protein homolog 1 yes no 2;3 2.0645E-14 146.88 5 2 1.0699 1.3114 10.128 5 Median 1.0837 1.3272 1.029 3 0 Median 0.70607 1.1286 9.8664 2 0 Median 132860000 69339000 63519000 93459000 46370000 47089000 39399000 22969000 16430000 6528 1137 6671 23879;23880;23881;23882;23883;23884;23885 36133;36134;36135;36136;36137;36138;36139;36140;36141;36142 36135 10 KVEFLK MVFCDDKIIFMASKKKVEFLKQIANTKGNE KIIFMASKKKVEFLKQIANTKGNENANGAP K K V L K Q 0 0 0 0 0 0 1 0 0 0 1 2 0 1 0 0 0 0 0 1 0 0 6 1 762.46398 Q9Y5B9;Q0VGA3 Q9Y5B9 81 86 SUPT16H FACT complex subunit SPT16 yes no 2 8.832E-06 119.56 3 0.76686 0.9426 5.1738 3 Median 0.76686 0.9426 5.1738 3 0 Median NaN NaN NaN 0 0 Median 203270000 110070000 93200000 203270000 110070000 93200000 0 0 0 6529 1829 6672 23886;23887;23888 36143;36144;36145 36144 2 KVELSESEEDK GTEKRESPSPAPKPRKVELSESEEDKGGKM PKPRKVELSESEEDKGGKMAAADSVQQRRQ R K V D K G 0 0 0 1 0 0 4 0 0 0 1 2 0 0 0 2 0 0 0 1 0 0 11 1 1291.6143 A0A0S2Z4W1;A9Z1X7;B7Z7U0;A0A0S2Z4Z6;Q8IYB3;M0R088;E9PCT1 A0A0S2Z4W1 459 469 SRRM1 Serine/arginine repetitive matrix protein 1 yes no 2 1.1743E-15 175.33 2 1 0.63258 0.97207 NaN 1 Median NaN NaN NaN 0 0 Median 0.63258 0.97207 NaN 1 0 Median 8296500 6043600 2252900 2701900 2701900 0 5594600 3341800 2252900 6530 471 6673 23889;23890;23891 36146;36147;36148 36146 3 KVEPSDPVAR RSVQRKVSPASGVSKKVEPSDPVARRVYLT SGVSKKVEPSDPVARRVYLTTQLKQKKSTL K K V A R R 1 1 0 1 0 0 1 0 0 0 0 1 0 0 2 1 0 0 0 2 0 0 10 1 1096.5877 A0A024R0F1;Q9UNY4 A0A024R0F1 404 413 TTF2 Transcription termination factor 2 yes no 2 0.0011967 79.974 1 0.81596 1.3256 NaN 1 Median NaN NaN NaN 0 0 Median 0.81596 1.3256 NaN 1 0 Median 15574000 8424500 7149000 0 0 0 15574000 8424500 7149000 6531 33 6674 23892 36149 36149 1 KVEPVPVTK EQVIKESDASKIPGKKVEPVPVTKQPTPPS SKIPGKKVEPVPVTKQPTPPSEAAASKKKP K K V T K Q 0 0 0 0 0 0 1 0 0 0 0 2 0 0 2 0 1 0 0 3 0 0 9 1 995.60153 A0A024R663;Q86UP2 A0A024R663 142 150 KTN1 Kinectin yes no 2 0.003519 80.688 2 0.30029 0.46937 9.5706 2 Median NaN NaN NaN 0 0 Median 0.30029 0.46937 9.5706 2 0 Median 17553000 13494000 4059400 0 0 0 17553000 13494000 4059400 6532 155 6675 23893;23894 36150;36151 36151 2 KVESLQEEIAFLK QDVDNASLARLDLERKVESLQEEIAFLKKL ERKVESLQEEIAFLKKLHEEEIQELQAQIQ R K V L K K 1 0 0 0 0 1 3 0 0 1 2 2 0 1 0 1 0 0 0 1 0 0 13 1 1532.845 V9HWE1;P08670;B0YJC4;B3KRK8;B0YJC5;Q5JVS8 V9HWE1 223 235 HEL113;VIM Vimentin yes no 2;3 2.2071E-55 210.15 8 3 0.76002 0.93129 25.802 10 Median 0.75168 0.91693 8.7669 8 0 Median 1.0403 1.6746 0.77005 2 0 Median 1059700000 561710000 497980000 962380000 517220000 445160000 97311000 44495000 52815000 6533 1245 6676 23895;23896;23897;23898;23899;23900;23901;23902;23903;23904;23905 36152;36153;36154;36155;36156;36157;36158;36159;36160;36161;36162;36163;36164;36165;36166;36167;36168;36169;36170;36171;36172;36173 36163 21 KVESLQEEIAFLKK QDVDNASLARLDLERKVESLQEEIAFLKKL RKVESLQEEIAFLKKLHEEEIQELQAQIQE R K V K K L 1 0 0 0 0 1 3 0 0 1 2 3 0 1 0 1 0 0 0 1 0 0 14 2 1660.94 V9HWE1;P08670;B0YJC4;B3KRK8;B0YJC5;Q5JVS8 V9HWE1 223 236 HEL113;VIM Vimentin yes no 3 0.00021261 98.654 3 0.72462 0.8519 23.081 3 Median 0.72462 0.8519 23.081 3 0 Median NaN NaN NaN 0 0 Median 43810000 27844000 15967000 43810000 27844000 15967000 0 0 0 6534 1245 6677 23906;23907;23908 36174;36175;36176;36177 36174 4 KVETDHIVAAVGLEPNVELAK GVSSGKLLIKLKDGRKVETDHIVAAVGLEP IVAAVGLEPNVELAKTGGLEIDSDFGGFRV R K V A K T 3 0 1 1 0 0 3 1 1 1 2 2 0 0 1 0 1 0 0 4 0 0 21 1 2231.2161 O95831;A0A140VK04;E9PMA0 O95831 388 408 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 4 0.00019076 64.843 2 1 0.58443 0.72281 33.873 3 Median 0.57623 0.71534 1.4691 2 0 Median 0.81791 1.2859 NaN 1 0 Median 33675000 20744000 12931000 21358000 13633000 7725300 12317000 7111300 5206100 6535 1224 6678 23909;23910;23911 36178;36179;36180;36181;36182 36178 5 KVFDPVPVGVTK QILPLHSQIPREEQRKVFDPVPVGVTKVIL EQRKVFDPVPVGVTKVILSTNIAETSITIN R K V T K V 0 0 0 1 0 0 0 1 0 0 0 2 0 1 2 0 1 0 0 4 0 0 12 1 1284.7442 Q08211 Q08211 697 708 DHX9 ATP-dependent RNA helicase A yes yes 2 0.012643 77.674 3 0.82888 1.0177 20.128 3 Median 0.82888 1.0177 20.128 3 0 Median NaN NaN NaN 0 0 Median 13874000 7748200 6126200 13874000 7748200 6126200 0 0 0 6536 1448 6679 23912;23913;23914 36183;36184;36185 36183 3 KVGILDVDLCGPSIPR TISTELALALRHAGKKVGILDVDLCGPSIP VGILDVDLCGPSIPRMLGAQGRAVHQCDRG K K V P R M 0 1 0 2 1 0 0 2 0 2 2 1 0 0 2 1 0 0 0 2 0 0 16 1 1737.9447 B2RDN3;H3BNF0;Q2YS46;H3BNS4;Q9Y5Y2 B2RDN3 45 60 NUBP2;NUBP1 Cytosolic Fe-S cluster assembly factor NUBP2 yes no 3 0.0099521 66.261 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1498700 1498700 0 1498700 1498700 0 0 0 0 6537 737 6680 23915 36186 36186 1 KVGIQELGPR YIFFRFHRYIFRSEKKVGIQELGPRFTLKL FRSEKKVGIQELGPRFTLKLRSLQKGTFDS K K V P R F 0 1 0 0 0 1 1 2 0 1 1 1 0 0 1 0 0 0 0 1 0 0 10 1 1095.64 Q9H9Y2 Q9H9Y2 302 311 RPF1 Ribosome production factor 1 yes yes 2;3 1.426E-05 78.939 3 0.80674 1.0408 8.0015 3 Plateau 0.80674 1.0408 8.0015 3 0 Plateau NaN NaN NaN 0 0 Median 23758000 14383000 9374900 23758000 14383000 9374900 0 0 0 6538 1747 6681 23916;23917;23918 36187;36188;36189;36190 36190 4 KVGLIAAR IGKPSTIRRDAPAGRKVGLIAARRTGRLRG RDAPAGRKVGLIAARRTGRLRGTKTVQEKE R K V A R R 2 1 0 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 1 826.53887 P62917;B4DVG7;E9PKU4;E9PP36 P62917 234 241 RPL8 60S ribosomal protein L8 yes no 2 0.0073881 97.473 3 2 0.59794 0.79125 20.057 5 Median 0.79046 1.0448 16.346 3 0 Median 0.40839 0.70844 0.69842 2 0 Median 620400000 374120000 246280000 457020000 259090000 197920000 163390000 115030000 48359000 6539 1417 6682 23919;23920;23921;23922;23923 36191;36192;36193;36194;36195 36194 5 KVHPAVVIR MVMATVKKGKPELRKKVHPAVVIRQRKSYR KPELRKKVHPAVVIRQRKSYRRKDGVFLYF K K V I R Q 1 1 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 0 3 0 0 9 1 1017.6447 Q9BTQ7;A0A024R1Q8;P62829;J3KT29;C9JD32;J3KTJ3;J3QQT9 Q9BTQ7 69 77 RPL23 60S ribosomal protein L23 yes no 3 0.0048991 54.982 4 2 0.90119 1.2004 12.169 5 Median 1.0185 1.2867 5.4961 3 0 Median 0.66522 1.0325 1.6953 2 0 Median 59218000 32444000 26774000 37944000 19525000 18419000 21274000 12919000 8355200 6540 63 6683 23924;23925;23926;23927;23928;23929 36196;36197;36198;36199;36200;36201;36202 36199 7 KVIDDTNITR LAMRQSVENDIHGLRKVIDDTNITRLQLET IHGLRKVIDDTNITRLQLETEIEALKEELL R K V T R L 0 1 1 2 0 0 0 0 0 2 0 1 0 0 0 0 2 0 0 1 0 0 10 1 1173.6354 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965 F8VZY9 187 196 KRT18 Keratin, type I cytoskeletal 18 yes no 2 5.7792E-13 180.09 3 0.18071 0.2405 3.3625 3 Median 0.18071 0.2405 3.3625 3 0 Median NaN NaN NaN 0 0 Median 43682000 37044000 6638000 43682000 37044000 6638000 0 0 0 6541 252 6684 23930;23931;23932 36203;36204;36205;36206 36205 4 KVIEASDVVLEVLDAR SGKQNSKKLYCQELKKVIEASDVVLEVLDA VIEASDVVLEVLDARDPLGCRCPQVEEAIV K K V A R D 2 1 0 2 0 0 2 0 0 1 2 1 0 0 0 1 0 0 0 4 0 0 16 1 1754.9778 A0A024R2Z6;Q9BVP2 A0A024R2Z6 124 139 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2;3 1.9074E-05 67.095 4 3 0.54606 0.81793 21.894 5 Median 0.63574 0.82635 13.097 3 0 Plateau 0.41995 0.64106 34.845 2 0 Median 33077000 20243000 12834000 22492000 13105000 9386700 10585000 7137800 3447000 6542 95 6685 23933;23934;23935;23936;23937;23938;23939 36207;36208;36209;36210;36211;36212;36213;36214;36215 36211 8 KVIQYLAYVASSHK LCTGESGAGKTENTKKVIQYLAYVASSHKS KKVIQYLAYVASSHKSKKDQGELERQLLQA K K V H K S 2 0 0 0 0 1 0 0 1 1 1 2 0 0 0 2 0 0 2 2 0 0 14 1 1605.8879 A0A024R1N1;P35579;Q86XU5;B4E3S1;Q5BKV1;Q9UMJ0 A0A024R1N1 186 199 MYH9 Myosin-9 yes no 3 2.1462E-07 71.506 4 2 0.97356 1.1752 83.491 5 Median 0.94992 1.1583 11.961 4 0 Median 4.8608 7.0187 NaN 1 0 Median 90334000 44176000 46158000 84050000 43446000 40605000 6283800 730680 5553100 6543 61 6686 23940;23941;23942;23943;23944;23945 36216;36217;36218;36219;36220;36221 36217 5 KVMQFMGK LFYEDIKRDPKHEIRKVMQFMGKKVDETVL DPKHEIRKVMQFMGKKVDETVLDKIVQETS R K V G K K 0 0 0 0 0 1 0 1 0 0 0 2 2 1 0 0 0 0 0 1 0 0 8 1 967.49833 B4DPE8;B8ZZF7;B4DLP0;O00338 B4DPE8 122 129 SULT1C2 Sulfotransferase;Sulfotransferase 1C2 yes no 2 0.014143 66.993 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5187400 5187400 0 5187400 5187400 0 0 0 0 6544 828 6687 23946 36222 36222 294;295 1 KVPGVTAIDLDEDTCTFHIYGEDQDAVK GLAIGTHGANIQQARKVPGVTAIDLDEDTC TCTFHIYGEDQDAVKKARSFLEFAEDVIQV R K V V K K 2 0 0 5 1 1 2 2 1 2 1 2 0 1 1 0 3 0 1 3 0 0 28 1 3135.4707 X5DQX7;Q06787;W5ZQ92;R9WQY1;A8MQB8;G3V0J0;X5D907;R9WNI0;Q59GC1;R9WPL0;A0A087WXI3;A0A0K0MJ24;Q8IXW7;A0A087WY29;A0A087WWR6 X5DQX7 246 273 FMR1 Fragile X mental retardation protein 1 yes no 4 0.00057396 48.773 3 0.91604 1.1342 2.05 3 Median 0.91604 1.1342 2.05 3 0 Median NaN NaN NaN 0 0 Median 39909000 20391000 19518000 39909000 20391000 19518000 0 0 0 6545 1447 6688 23947;23948;23949 36223;36224;36225;36226 36225 4 KVPGVTAIDLDEDTCTFHIYGEDQDAVKK GLAIGTHGANIQQARKVPGVTAIDLDEDTC CTFHIYGEDQDAVKKARSFLEFAEDVIQVP R K V K K A 2 0 0 5 1 1 2 2 1 2 1 3 0 1 1 0 3 0 1 3 0 0 29 2 3263.5656 X5DQX7;Q06787;W5ZQ92;R9WQY1;A8MQB8;G3V0J0;X5D907;R9WNI0;Q59GC1;R9WPL0;A0A087WXI3;A0A0K0MJ24;Q8IXW7;A0A087WY29;A0A087WWR6 X5DQX7 246 274 FMR1 Fragile X mental retardation protein 1 yes no 4 0.044111 26.211 1 1.159 1.2997 NaN 1 Median 1.159 1.2997 NaN 1 0 Median NaN NaN NaN 0 0 Median 7924500 3947200 3977300 7924500 3947200 3977300 0 0 0 6546 1447 6689 23950 36227 36227 1 KVPGVTAIELDEDTGTFR GLAIGTHGSNIQQARKVPGVTAIELDEDTG GVTAIELDEDTGTFRIYGESADAVKKARGF R K V F R I 1 1 0 2 0 0 2 2 0 1 1 1 0 1 1 0 3 0 0 2 0 0 18 1 1946.9949 A0A0F7KYT8;A0A0F7L0Q8;B4DXZ6;A0A0F7L1S3;P51114;B4DM78;E7EU85;B4DGH9;E9PFF5;B4DM21 A0A0F7KYT8 246 263 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 3 7.7612E-41 188.9 4 1 0.6782 0.90193 29.772 5 Median 0.66708 0.8796 10.691 4 0 Median 1.0357 1.6505 NaN 1 0 Median 212280000 125000000 87285000 197060000 118560000 78499000 15222000 6435800 8785700 6547 438 6690 23951;23952;23953;23954;23955 36228;36229;36230;36231;36232;36233;36234;36235;36236;36237 36231 10 KVPGVTAIELGEETCTFR GLAIGTHGANIQQARKVPGVTAIELGEETC GVTAIELGEETCTFRIYGETPEACRQARSY R K V F R I 1 1 0 0 1 0 3 2 0 1 1 1 0 1 1 0 3 0 0 2 0 0 18 1 2006.0143 P51116 P51116 256 273 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 3 0.010892 38.878 2 0.79873 1.0504 9.6027 2 Median 0.79873 1.0504 9.6027 2 0 Median NaN NaN NaN 0 0 Median 37015000 22570000 14444000 37015000 22570000 14444000 0 0 0 6548 1360 6691 23956;23957 36238;36239 36239 2 KVPPSLLCEINTNAR SSDGFIKMWKLKQDKKVPPSLLCEINTNAR KVPPSLLCEINTNARLTCLGVWLDKVADMK K K V A R L 1 1 2 0 1 0 1 0 0 1 2 1 0 0 2 1 1 0 0 1 0 0 15 1 1710.9087 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 281 295 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 3 1.0029E-06 115.26 4 1 1.0303 1.3415 39.87 5 Median 1.1286 1.4906 16.082 4 0 Median 0.41562 0.63224 NaN 1 0 Median 57597000 26812000 30785000 52721000 23344000 29377000 4875800 3468100 1407700 6549 478 6692 23958;23959;23960;23961;23962 36240;36241;36242;36243;36244;36245;36246;36247;36248 36242 9 KVPQVSTPTLVEVSR GEYGFQNALIVRYTRKVPQVSTPTLVEVSR KVPQVSTPTLVEVSRSLGKVGTRCCTKPES R K V S R S 0 1 0 0 0 1 1 0 0 0 1 1 0 0 2 2 2 0 0 4 0 0 15 1 1638.9305 CON__P02769;A0A087WWT3;C9JKR2;H0YA55;D6RHD5;B7WNR0;B4DPR2;F6KPG5;A0A0C4DGB6;A8K9P0;Q56G89;CON__P02768-1;B2RBS8;B4DPP6;P02768 CON__P02769 437 451 ALB Serum albumin yes no 3 0.02088 60.158 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11911000 11911000 0 11911000 11911000 0 0 0 0 + 6550 952 6693 23963 36249 36249 1 KVPVSVNLLSK RLLPSLIGRHFYQRKKVPVSVNLLSKNLSR YQRKKVPVSVNLLSKNLSREINDCIGGTVL K K V S K N 0 0 1 0 0 0 0 0 0 0 2 2 0 0 1 2 0 0 0 3 0 0 11 1 1182.7336 O76021;Q32Q62;J3QSV6;A0PJ61;A0PJ87;I3L3C4 O76021 178 188 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2;3 0.00088953 91.701 6 0.65233 0.7917 6.6012 6 Median 0.65233 0.7917 6.6012 6 0 Median NaN NaN NaN 0 0 Median 1330600000 796390000 534230000 1330600000 796390000 534230000 0 0 0 6551 1210 6694 23964;23965;23966;23967;23968;23969 36250;36251;36252;36253;36254;36255;36256 36254 6 KVQDGLSDIAEK ETKEKSKHLKTKTCKKVQDGLSDIAEKFLK TCKKVQDGLSDIAEKFLKKDQSDETSEDDK K K V E K F 1 0 0 2 0 1 1 1 0 1 1 2 0 0 0 1 0 0 0 1 0 0 12 1 1301.6827 A4LAA3;P46100;A0A096LNL9;A0A096LNW1;B7Z1D8 A4LAA3 956 967 ATRX Transcriptional regulator ATRX yes no 2 1.1148E-07 149.49 4 2 0.68062 0.83955 21.771 6 Median 0.61899 0.76803 8.6449 4 0 Median 0.74967 1.1764 3.3907 2 0 Median 42644000 24302000 18342000 24990000 14786000 10204000 17654000 9516100 8138100 6552 556 6695 23970;23971;23972;23973;23974;23975 36257;36258;36259;36260;36261;36262;36263;36264;36265;36266 36258 10 KVQFDGTNSAFK KYNVSTTPYLQSVKKKVQFDGTNSAFKELK VKKKVQFDGTNSAFKELKFLTPVRRSRRLQ K K V F K E 1 0 1 1 0 1 0 1 0 0 0 2 0 2 0 1 1 0 0 1 0 0 12 1 1340.6725 B2RMQ4;Q8WWK9 B2RMQ4 605 616 CKAP2 Cytoskeleton-associated protein 2 yes no 2 4.9262E-05 107.34 3 1.2442 1.5389 12.597 2 Median 1.2442 1.5389 12.597 2 0 Median NaN NaN NaN 0 0 Median 15609000 8864100 6744800 15609000 8864100 6744800 0 0 0 6553 745 6696 23976;23977;23978 36267;36268;36269;36270 36270 4 KVQTEVLQK SEKAKQLRALRKYGKKVQTEVLQKRQQEKA LRKYGKKVQTEVLQKRQQEKAHMMNAIKKY K K V Q K R 0 0 0 0 0 2 1 0 0 0 1 2 0 0 0 0 1 0 0 2 0 0 9 1 1071.6288 Q6IB29;H7C2Q8;Q99848 Q6IB29 179 187 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 6.7767E-39 223.88 4 2 1.1505 1.2591 3.827 6 Linear 1.0254 1.2566 3.545 4 0 Linear 0.71446 1.1552 2.418 2 0 Median 743510000 387260000 356260000 555460000 278720000 276740000 188050000 108530000 79519000 6554 1123 6697 23979;23980;23981;23982;23983;23984 36271;36272;36273;36274;36275;36276;36277;36278;36279;36280;36281 36281 11 KVQVPNCDEIFYAGTGNLLLR MHSLLIKNLKNEITKKVQVPNCDEIFYAGT CDEIFYAGTGNLLLRDADSITLFDVQQKRT K K V L R D 1 1 2 1 1 1 1 2 0 1 3 1 0 1 1 0 1 0 1 2 0 0 21 1 2406.2366 P53621 P53621 447 467 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 3 0.020223 50.956 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1436600 1436600 0 1436600 1436600 0 0 0 0 6555 1371 6698 23985 36282 36282 1 KVSGTLDTPEK RQTSTKGQVLRKKKKKVSGTLDTPEKTVDS KKKKKVSGTLDTPEKTVDSQGPTPVCTPTF K K V E K T 0 0 0 1 0 0 1 1 0 0 1 2 0 0 1 1 2 0 0 1 0 0 11 1 1173.6241 Q9BYG3;C9J808;H7BZL0 Q9BYG3 216 226 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2 1.5032E-13 182.28 2 2 0.86197 1.2043 8.986 4 Median 0.90677 1.1146 0.25087 2 0 Median 0.81977 1.3022 0.34623 2 0 Median 86814000 45652000 41163000 59637000 31161000 28476000 27177000 14491000 12686000 6556 1726 6699 23986;23987;23988;23989 36283;36284;36285;36286;36287;36288;36289 36284 7 KVTGELAFDTSSADVR YWEMMPPTILIDLLKKVTGELAFDTSSADV VTGELAFDTSSADVRCSVFKCLPMILDNKL K K V V R C 2 1 0 2 0 0 1 1 0 0 1 1 0 1 0 2 2 0 0 2 0 0 16 1 1694.8475 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5 Q86XI2 422 437 NCAPG2 Condensin-2 complex subunit G2 yes no 3 0.00012256 90.706 3 2 0.54216 0.78935 18.653 4 Median 0.68995 0.91698 7.1604 2 0 Median 0.44095 0.67594 7.9015 2 0 Median 34026000 20970000 13056000 19638000 10401000 9237300 14387000 10569000 3819000 6557 1621 6700 23990;23991;23992;23993;23994 36290;36291;36292;36293;36294;36295 36293 6 KVTLGTQPTVLR YFGLNIETGLLSDRKKVTLGTQPTVLRTFR DRKKVTLGTQPTVLRTFRSLSTTNVFACSD K K V L R T 0 1 0 0 0 1 0 1 0 0 2 1 0 0 1 0 3 0 0 2 0 0 12 1 1311.7874 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 628 639 DDB1 DNA damage-binding protein 1 yes no 2;3 0.021771 77.387 3 0.82769 1.0654 4.2202 3 Median 0.82769 1.0654 4.2202 3 0 Median NaN NaN NaN 0 0 Median 36303000 19179000 17123000 36303000 19179000 17123000 0 0 0 6558 1520 6701 23995;23996;23997 36296;36297;36298 36297 2 KVTMINAIPVASLDPIK LKNFDMVIVYKDYSKKVTMINAIPVASLDP TMINAIPVASLDPIKEWLNSCDLKYTEGVQ K K V I K E 2 0 1 1 0 0 0 0 0 3 1 2 1 0 2 1 1 0 0 2 0 0 17 1 1809.0434 Q9Y5B9 Q9Y5B9 867 883 SUPT16H FACT complex subunit SPT16 yes yes 3 0.009777 42.382 2 0.82005 1.0245 5.9086 2 Median 0.82005 1.0245 5.9086 2 0 Median NaN NaN NaN 0 0 Median 11354000 6179600 5174300 11354000 6179600 5174300 0 0 0 6559 1829 6702;6703 23998;23999 36299;36300 36300 855 2 KVTSVVFHPSQDLVFSASPDATIR KSSEQILATLKGHTKKVTSVVFHPSQDLVF SQDLVFSASPDATIRIWSVPNASCVQVVRA K K V I R I 2 1 0 2 0 1 0 0 1 1 1 1 0 2 2 4 2 0 0 4 0 0 24 1 2600.3599 Q9UMS4 Q9UMS4 266 289 PRPF19 Pre-mRNA-processing factor 19 yes yes 3;4 0.0003788 43.162 2 2 1.1738 1.8295 63.085 3 Median 0.54179 0.69821 NaN 1 0 Median 1.3171 2.0464 15.841 2 0 Median 36133000 23398000 12735000 14445000 12834000 1611300 21688000 10564000 11124000 6560 1795 6704 24000;24001;24002;24003 36301;36302;36303;36304;36305;36306 36302 6 KVVDPFSK KNKRLTKGGKKGAKKKVVDPFSKKDWYDVK GKKGAKKKVVDPFSKKDWYDVKAPAMFNIR K K V S K K 0 0 0 1 0 0 0 0 0 0 0 2 0 1 1 1 0 0 0 2 0 0 8 1 918.51747 Q6NXR8;P61247;A8K4W0;B7Z3M5;H0Y8L7;E9PFI5;H0Y9Y4;D6RI02 Q6NXR8 20 27 RPS3A 40S ribosomal protein S3a yes no 2 0.00045541 140.14 3 2 0.80269 0.98288 17.701 5 Median 0.83668 1.0341 10.619 3 0 Median 0.50905 0.79852 0.096215 2 0 Median 171470000 97582000 73888000 153720000 86167000 67558000 17746000 11416000 6330000 6561 1393 6705 24004;24005;24006;24007;24008 36307;36308;36309;36310;36311;36312 36307 6 KVVDPFSKK KNKRLTKGGKKGAKKKVVDPFSKKDWYDVK KKGAKKKVVDPFSKKDWYDVKAPAMFNIRN K K V K K D 0 0 0 1 0 0 0 0 0 0 0 3 0 1 1 1 0 0 0 2 0 0 9 2 1046.6124 Q6NXR8;P61247;A8K4W0;B7Z3M5;H0Y8L7;E9PFI5;H0Y9Y4;D6RI02 Q6NXR8 20 28 RPS3A 40S ribosomal protein S3a yes no 3 0.042513 35.541 1 0.88105 1.0358 NaN 1 Median 0.88105 1.0358 NaN 1 0 Median NaN NaN NaN 0 0 Median 15671000 7767400 7904000 15671000 7767400 7904000 0 0 0 6562 1393 6706 24009 36313 36313 1 KVVEAVNSDSDSEFGIPK SSDTVPKPKRAPKQKKVVEAVNSDSDSEFG EAVNSDSDSEFGIPKKTTTPKGKGRGAKKR K K V P K K 1 0 1 2 0 0 2 1 0 1 0 2 0 1 1 3 0 0 0 3 0 0 18 1 1919.9476 Q71UH4;Q02880;Q59H80;B4DLV2;Q8WTY5 Q71UH4 1487 1504 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 3 0.014378 22.221 2 0.58083 0.72326 21.503 2 Median 0.58083 0.72326 21.503 2 0 Median NaN NaN NaN 0 0 Median 14722000 7824900 6897500 14722000 7824900 6897500 0 0 0 6563 1437 6707 24010;24011 36314;36315 36314 2 KVVESGGPEILK VSFMSQLLSSNNFLKKVVESGGPEILKGLE FLKKVVESGGPEILKGLEERLLETVLGYIS K K V L K G 0 0 0 0 0 0 2 2 0 1 1 2 0 0 1 1 0 0 0 2 0 0 12 1 1254.7184 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8;Q8N7L7 B2RWN5 1533 1544 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 2.3838E-07 117.25 4 0.96973 1.1939 5.796 4 Median 0.96973 1.1939 5.796 4 0 Median NaN NaN NaN 0 0 Median 62562000 31984000 30578000 62562000 31984000 30578000 0 0 0 6564 748 6708 24012;24013;24014;24015 36316;36317;36318;36319;36320;36321;36322;36323 36320 8 KVVGCSCVVVK EWVGLCKIDREGKPRKVVGCSCVVVKDYGK GKPRKVVGCSCVVVKDYGKESQAKDVIEEY R K V V K D 0 0 0 0 2 0 0 1 0 0 0 2 0 0 0 1 0 0 0 5 0 0 11 1 1233.6573 P25398 P25398 102 112 RPS12 40S ribosomal protein S12 yes yes 2 0.001384 112.13 3 0.70913 0.88191 5.3662 3 Median 0.70913 0.88191 5.3662 3 0 Median NaN NaN NaN 0 0 Median 38347000 19716000 18631000 38347000 19716000 18631000 0 0 0 6565 1296 6709 24016;24017;24018 36324;36325;36326;36327;36328;36329;36330 36326 7 KVVLLTGETSTDLK VYMDWYEKFQDRLNKKVVLLTGETSTDLKL KKVVLLTGETSTDLKLLGKGNIIISTPEKW K K V L K L 0 0 0 1 0 0 1 1 0 0 3 2 0 0 0 1 3 0 0 2 0 0 14 1 1502.8556 O75643;A4FU77 O75643 1404 1417 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2;3 0.0067092 77.74 3 0.86525 1.0365 7.4041 2 Median 0.86525 1.0365 7.4041 2 0 Median NaN NaN NaN 0 0 Median 8569100 2637900 5931200 8569100 2637900 5931200 0 0 0 6566 1206 6710 24019;24020;24021 36331;36332;36333;36334 36331 4 KVVNPLFEK KVAPAPAVVKKQEAKKVVNPLFEKRPKNFG KKQEAKKVVNPLFEKRPKNFGIGQDIQPKR K K V E K R 0 0 1 0 0 0 1 0 0 0 1 2 0 1 1 0 0 0 0 2 0 0 9 1 1072.6281 P62424;Q5T8U3 P62424 26 34 RPL7A 60S ribosomal protein L7a yes no 2;3 9.0514E-15 205.12 6 2 0.70507 0.93349 5.6645 8 Linear 0.76875 0.93648 6.0674 6 0 Linear 0.52856 0.85242 3.5845 2 0 Median 948120000 535310000 412800000 825870000 458550000 367320000 122240000 76759000 45483000 6567 1411 6711 24022;24023;24024;24025;24026;24027;24028;24029 36335;36336;36337;36338;36339;36340;36341;36342;36343;36344;36345;36346;36347 36337 13 KVYENYPTYDLTER ASANLEEVTMKQICKKVYENYPTYDLTERK KKVYENYPTYDLTERKDFIKTTVKELIS__ K K V E R K 0 1 1 1 0 0 2 0 0 0 1 1 0 0 1 0 2 0 3 1 0 0 14 1 1789.8523 B4DNW3;H0Y993;Q6MZJ9;P35659;B4DFG0 P35659 349 362 DEK;DKFZp686A24118 Protein DEK no no 2;3 0.0031602 66.568 1 2 0.51109 0.81713 14.661 3 Median 0.705 0.95651 NaN 1 0 Median 0.49246 0.76363 9.5768 2 0 Median 26593000 15979000 10614000 6527100 3670000 2857100 20066000 12309000 7757300 6568 1322;843 6712 24030;24031;24032 36348;36349;36350 36349 3 KWGVPIEK KLNYLDPRITVAWCKKWGVPIEKIYNKTQR ITVAWCKKWGVPIEKIYNKTQREKFAWAID K K W E K I 0 0 0 0 0 0 1 1 0 1 0 2 0 0 1 0 0 1 0 1 0 0 8 1 955.5491 P11387;B9EG90;Q9BVT2 P11387 735 742 TOP1 DNA topoisomerase 1 yes no 2 0.0042993 101.64 2 0.75878 1.2224 2.4791 2 Median NaN NaN NaN 0 0 Median 0.75878 1.2224 2.4791 2 0 Median 102400000 56674000 45730000 0 0 0 102400000 56674000 45730000 6569 1255 6713 24033;24034 36351;36352;36353;36354 36352 4 KYAPTEAQLNAVDALIDSMSLAK EDLRQYMFSSLKNSKKYAPTEAQLNAVDAL LNAVDALIDSMSLAKKDEKTDTLEDLFPTT K K Y A K K 5 0 1 2 0 1 1 0 0 1 3 2 1 0 1 2 1 0 1 1 0 0 23 1 2448.257 P13010;Q53T09 P13010 443 465 XRCC5 X-ray repair cross-complementing protein 5 yes no 3 2.0873E-08 58.92 2 2 0.51551 0.82218 20.24 3 Median 0.48133 0.59543 NaN 1 0 Median 0.52598 0.84314 3.5592 2 0 Median 55535000 36095000 19440000 8847500 5794100 3053400 46688000 30301000 16387000 6570 1262 6714;6715 24035;24036;24037;24038 36355;36356;36357;36358 36358 524 4 KYAVDDVPFSIPAASEIADLSNIINK ______________________________ PAASEIADLSNIINKLLKDKNEFHKHVEFD K K Y N K L 4 0 2 3 0 0 1 0 0 4 1 2 0 1 2 3 0 0 1 2 0 0 26 1 2789.4487 Q53T99;Q9GZL7 Q53T99 14 39 WDR12 Ribosome biogenesis protein WDR12 yes no 3 3.4886E-10 66.793 2 0.60146 0.73533 47.159 2 Median 0.60146 0.73533 47.159 2 0 Median NaN NaN NaN 0 0 Median 125810000 67346000 58465000 125810000 67346000 58465000 0 0 0 6571 1543 6716 24039;24040 36359;36360;36361 36361 3 KYCQVIR EDGKKQLEKDFSSMKKYCQVIRVIAHTQMR EKDFSSMKKYCQVIRVIAHTQMRLLPLRQK K K Y I R V 0 1 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 7 1 965.51167 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;Q49AJ9;Q9BT63;H7C422;H7C3M2;B5MCW2 P39023 155 161 RPL3;rpl3 60S ribosomal protein L3 yes no 2 0.0026595 110.34 2 0.70901 0.92362 NaN 1 Median 0.70901 0.92362 NaN 1 0 Median NaN NaN NaN 0 0 Median 111700000 28185000 83515000 111700000 28185000 83515000 0 0 0 6572 1330 6717 24041;24042 36362;36363;36364 36362 3 KYDAFLASESLIK KKLNKNKKLVKKLAKKYDAFLASESLIKQI AKKYDAFLASESLIKQIPRILGPGLNKAGK K K Y I K Q 2 0 0 1 0 0 1 0 0 1 2 2 0 1 0 2 0 0 1 0 0 0 13 1 1483.7922 P62906;Q1JQ76;A0A024RCW3 P62906 106 118 RPL10A 60S ribosomal protein L10a;Ribosomal protein yes no 2 1.5203E-64 247.88 5 2 0.81249 0.98663 3.948 6 Median 0.82834 1.0035 1.8621 4 0 Median 0.58558 0.9442 4.5838 2 0 Median 1156100000 617550000 538550000 1037700000 543950000 493790000 118360000 73602000 44756000 6573 1415 6718 24043;24044;24045;24046;24047;24048;24049 36365;36366;36367;36368;36369;36370;36371;36372;36373;36374;36375;36376;36377;36378 36367 14 KYDTVLDILR TCNSMVLFDHVGCLKKYDTVLDILRDFFEL VGCLKKYDTVLDILRDFFELRLKYYGLRKE K K Y L R D 0 1 0 2 0 0 0 0 0 1 2 1 0 0 0 0 1 0 1 1 0 0 10 1 1234.6921 P11388 P11388 1011 1020 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 1.5087E-07 123.51 6 2 0.84152 1.2163 12.07 6 Median 0.84519 1.1203 8.4529 4 0 Median 0.83072 1.4076 0.44465 2 0 Median 455210000 247760000 207440000 386610000 206940000 179670000 68598000 40822000 27776000 6574 1256 6719 24050;24051;24052;24053;24054;24055;24056;24057 36379;36380;36381;36382;36383;36384;36385;36386;36387;36388 36383 10 KYEAIQLTFK GYKSIMELMNVLELRKYEAIQLTFKQVSKN VLELRKYEAIQLTFKQVSKNFSEVFQKLVP R K Y F K Q 1 0 0 0 0 1 1 0 0 1 1 2 0 1 0 0 1 0 1 0 0 0 10 1 1239.6863 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 1025 1034 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.00068792 121.36 1 0.49214 0.61048 NaN 1 Median 0.49214 0.61048 NaN 1 0 Median NaN NaN NaN 0 0 Median 6174000 3649600 2524400 6174000 3649600 2524400 0 0 0 6575 663 6720 24058 36389 36389 1 KYEDICPSTHNMDVPNIK HAKVHLVGIDIFTGKKYEDICPSTHNMDVP DICPSTHNMDVPNIKRNDFQLIGIQDGYLS K K Y I K R 0 0 2 2 1 0 1 0 1 2 0 2 1 0 2 1 1 0 1 1 0 0 18 1 2159.998 I3L397;I3L504;P63241;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4;Q6IS14 I3L397 68 85 EIF5A;EIF5A2;EIF5AL1 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like yes no 3 9.4143E-11 115.26 1 0.72757 0.9074 NaN 1 Median 0.72757 0.9074 NaN 1 0 Median NaN NaN NaN 0 0 Median 3370700 1997000 1373700 3370700 1997000 1373700 0 0 0 6576 1127 6721 24059 36390 36390 401 1 KYEEIDNAPEER AITKILAEGGGAKFKKYEEIDNAPEERARG KFKKYEEIDNAPEERARGITINAAHVEYST K K Y E R A 1 1 1 1 0 0 4 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 12 1 1491.6842 P49411 P49411 91 102 TUFM Elongation factor Tu, mitochondrial yes yes 2;3 8.2131E-32 208.33 8 4 0.52093 0.68113 109.35 10 Median 0.47398 0.62065 18.831 8 0 Median 5.2908 7.9711 28.307 2 0 Median 193050000 109150000 83900000 167110000 107210000 59901000 25941000 1942300 23999000 6577 1350 6722 24060;24061;24062;24063;24064;24065;24066;24067;24068;24069;24070;24071 36391;36392;36393;36394;36395;36396;36397;36398;36399;36400;36401;36402;36403;36404;36405;36406;36407;36408;36409 36396 19 KYELGRPAANTK RRKTGGKRKPYHKKRKYELGRPAANTKIGP KKRKYELGRPAANTKIGPRRIHTVRVRGGN R K Y T K I 2 1 1 0 0 0 1 1 0 0 1 2 0 0 1 0 1 0 1 0 0 0 12 2 1346.7306 Q5JR94;P62241;Q5JR95 Q5JR94 26 37 RPS8 40S ribosomal protein S8 yes no 2;3 2.172E-76 227.36 7 2 0.85571 1.0233 33.863 9 Median 0.86299 1.0367 6.6035 7 0 Median 0.2868 0.48913 3.8097 2 0 Median 785020000 417610000 367410000 772640000 408170000 364470000 12377000 9440700 2936200 6578 1399 6723 24072;24073;24074;24075;24076;24077;24078;24079;24080 36410;36411;36412;36413;36414;36415;36416;36417;36418;36419;36420;36421;36422;36423 36415 13 KYEPPVPTR HGPGGGKKDDKDKKKKYEPPVPTRVGKKKK DKDKKKKYEPPVPTRVGKKKKKTKGPDAAS K K Y T R V 0 1 0 0 0 0 1 0 0 0 0 1 0 0 3 0 1 0 1 1 0 0 9 1 1085.5869 Q53XL8;Q53HB3;P62191 Q53XL8 24 32 PSMC1 26S protease regulatory subunit 4 yes no 2 0.047207 46.457 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3318100 0 3318100 0 0 0 3318100 0 3318100 6579 1398 6724 24081 36424 36424 1 KYEQGFITDPVVLSPK NCTPEFQANEVRKVKKYEQGFITDPVVLSP YEQGFITDPVVLSPKDRVRDVFEAKARHGF K K Y P K D 0 0 0 1 0 1 1 1 0 1 1 2 0 1 2 1 1 0 1 2 0 0 16 1 1819.972 P12268;H0Y4R1;B7Z1G4;Q6QE17 P12268 109 124 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2;3 5.3754E-68 219.95 9 3 0.38994 0.47776 148.16 7 Median 0.36985 0.4552 12.252 5 0 Median 5.7692 9.1434 0.88858 2 0 Median 222150000 136070000 86078000 190520000 131580000 58941000 31626000 4489100 27137000 6580 1261 6725 24082;24083;24084;24085;24086;24087;24088;24089;24090;24091;24092;24093 36425;36426;36427;36428;36429;36430;36431;36432;36433;36434;36435;36436;36437;36438;36439;36440;36441 36432 17 KYETVIMPVFGIATPFHIATIK PKEPHIREMKIYIDKKYETVIMPVFGIATP PVFGIATPFHIATIKNISMSVEGDYTYLRI K K Y I K N 2 0 0 0 0 0 1 1 1 4 0 2 1 2 2 0 3 0 1 2 0 0 22 1 2475.36 Q9Y5B9 Q9Y5B9 534 555 SUPT16H FACT complex subunit SPT16 yes yes 3;4 2.3687E-14 125.35 5 4 0.6989 0.955 18.995 9 Median 0.81298 0.99975 11.421 5 0 Median 0.53855 0.87191 23.145 4 0 Median 199820000 125800000 74019000 52594000 28008000 24587000 147230000 97797000 49433000 6581 1829 6726;6727 24094;24095;24096;24097;24098;24099;24100;24101;24102 36442;36443;36444;36445;36446;36447;36448;36449;36450;36451;36452;36453;36454;36455 36450 856 13 KYETVQDILK TCNSMVLFDHMGCLKKYETVQDILKEFFDL MGCLKKYETVQDILKEFFDLRLSYYGLRKE K K Y L K E 0 0 0 1 0 1 1 0 0 1 1 2 0 0 0 0 1 0 1 1 0 0 10 1 1235.6762 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80;Q6W6M6;H7BZ82 Q71UH4 1004 1013 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 1.0065E-21 167.67 4 1 0.59464 0.73147 27.099 5 Median 0.58431 0.71758 22.701 4 0 Median 0.61328 0.98236 NaN 1 0 Median 90841000 59227000 31613000 77630000 50976000 26654000 13211000 8251400 4959200 6582 1437 6728 24103;24104;24105;24106;24107 36456;36457;36458;36459;36460;36461;36462 36461 7 KYEVADVGIEVK HSDSKHDGTSNSPSKKYEVADVGIEVKVTK PSKKYEVADVGIEVKVTKNFSLHRCNKCGK K K Y V K V 1 0 0 1 0 0 2 1 0 1 0 2 0 0 0 0 0 0 1 3 0 0 12 1 1348.7238 Q2TB10;B7Z4V7 Q2TB10 599 610 ZNF800 Zinc finger protein 800 yes no 2 1.5384E-19 187.78 3 2 0.81302 1.0635 22.664 4 Median 0.85337 1.0601 22.45 3 0 Median 0.77459 1.2196 NaN 1 0 Median 59995000 31338000 28657000 42538000 23565000 18974000 17457000 7773800 9683500 6583 1530 6729 24108;24109;24110;24111;24112 36463;36464;36465;36466;36467;36468 36464 6 KYKPLDLRPK NQTQKENLRKFYKGKKYKPLDLRPKKTRAM FYKGKKYKPLDLRPKKTRAMRRRLNKHEEN K K Y P K K 0 1 0 1 0 0 0 0 0 0 2 3 0 0 2 0 0 0 1 0 0 0 10 3 1256.7605 P42766 P42766 77 86 RPL35 60S ribosomal protein L35 yes yes 3 0.0019191 70.552 2 0.78739 1.0281 11.087 2 Median 0.78739 1.0281 11.087 2 0 Median NaN NaN NaN 0 0 Median 61230000 34222000 27009000 61230000 34222000 27009000 0 0 0 6584 1340 6730 24113;24114 36469;36470;36471 36470 3 KYNPDSGLEVLAVQR TGIKYVVDTGMVKAKKYNPDSGLEVLAVQR KYNPDSGLEVLAVQRVSKTQAWQRTGRAGR K K Y Q R V 1 1 1 1 0 1 1 1 0 0 2 1 0 0 1 1 0 0 1 2 0 0 15 1 1687.8893 B4DIS6;Q9H6R0;I3L1L6;Q9NPV4 B4DIS6 438 452 DHX33;DKFZp762F2011 Putative ATP-dependent RNA helicase DHX33 yes no 3 0.00015828 64.52 3 0.90856 1.18 4.0733 3 Median 0.90856 1.18 4.0733 3 0 Median NaN NaN NaN 0 0 Median 23311000 12256000 11055000 23311000 12256000 11055000 0 0 0 6585 811 6731 24115;24116;24117 36472;36473;36474;36475 36474 4 KYPLTVFESR VVTQCGKFYHEACVKKYPLTVFESRGFRCP EACVKKYPLTVFESRGFRCPLHSCVSCHAS K K Y S R G 0 1 0 0 0 0 1 0 0 0 1 1 0 1 1 1 1 0 1 1 0 0 10 1 1238.6659 O96028 O96028 746 755 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 2 0.0046319 101.46 1 0.9283 1.246 NaN 1 Median 0.9283 1.246 NaN 1 0 Median NaN NaN NaN 0 0 Median 4468400 2457100 2011300 4468400 2457100 2011300 0 0 0 6586 1228 6732 24118 36476 36476 1 KYQEQLVQEQELAK AVDKQLASELEYDMKKYQEQLVQEQELAKH KKYQEQLVQEQELAKHADVAGTAGGAEVAP K K Y A K H 1 0 0 0 0 4 3 0 0 0 2 2 0 0 0 0 0 0 1 1 0 0 14 1 1732.8996 P42695;Q96FA6;E9PQA3 P42695 1258 1271 NCAPD3 Condensin-2 complex subunit D3 yes no 2;3 2.008E-49 232.78 4 2 0.65106 0.80356 7.601 4 Median 0.67015 0.8141 3.8644 3 0 Median 0.45089 0.71462 NaN 1 0 Median 35602000 25002000 10600000 20855000 13542000 7312900 14747000 11460000 3287100 6587 1338 6733 24119;24120;24121;24122;24123;24124 36477;36478;36479;36480;36481;36482;36483 36477 7 KYTLPPGVDPTQVSSSLSPEGTLTVEAPMPK ERQDEHGYISRCFTRKYTLPPGVDPTQVSS LSPEGTLTVEAPMPKLATQSNEITIPVTFE R K Y P K L 1 0 0 1 0 1 2 2 0 0 3 2 1 0 6 4 4 0 1 3 0 0 31 1 3225.6479 V9HW43;P04792;B4DL87 V9HW43 141 171 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 3 0.0026058 53.482 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1806300 1806300 0 1806300 1806300 0 0 0 0 6588 1232 6734 24125;24126 36484;36485 36485 2 KYVATLGVEVHPLVFHTNR KTTFVKRHLTGEFEKKYVATLGVEVHPLVF TLGVEVHPLVFHTNRGPIKFNVWDTAGQEK K K Y N R G 1 1 1 0 0 0 1 1 2 0 2 1 0 1 1 0 2 0 1 4 0 0 19 1 2179.1902 B5MDF5;P62826;J3KQE5;F5H018;H0YFC6;Q96QB7;Q0EFC9 B5MDF5 38 56 RAN;TC4 GTP-binding nuclear protein Ran yes no 4 0.019984 17.021 1 0.59175 0.78009 NaN 1 Median 0.59175 0.78009 NaN 1 0 Median NaN NaN NaN 0 0 Median 17450000 11419000 6030700 17450000 11419000 6030700 0 0 0 6589 901 6735 24127 36486;36487 36487 2 KYVIYIER YKGQQIGKVVQVYRKKYVIYIERVQREKAN VVQVYRKKYVIYIERVQREKANGTTVHVGI K K Y E R V 0 1 0 0 0 0 1 0 0 2 0 1 0 0 0 0 0 0 2 1 0 0 8 1 1082.6124 Q9UNX3;E5RIT6;J3KS10;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;Q6IBH6;P61254;J3KTJ8 Q9UNX3 77 84 RPL26L1;RPL26 60S ribosomal protein L26-like 1;60S ribosomal protein L26 no no 2;3 0.0015113 120.87 6 0.7984 1.0467 17.575 5 Median 0.7984 1.0467 17.575 5 0 Median NaN NaN NaN 0 0 Median 919060000 505190000 413870000 919060000 505190000 413870000 0 0 0 6590 1797;1142 6736 24128;24129;24130;24131;24132;24133 36488;36489;36490;36491;36492;36493;36494;36495 36488 8 KYVSQYYPK TRLCEPKEASYSLIRKYVSQYYPKLRVDIR SYSLIRKYVSQYYPKLRVDIRPQLLKNALQ R K Y P K L 0 0 0 0 0 1 0 0 0 0 0 2 0 0 1 1 0 0 3 1 0 0 9 1 1174.6023 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 283 291 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.011457 67.993 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12103000 0 12103000 12103000 0 12103000 0 0 0 6591 1565 6737 24134 36496 36496 1 KYVTDIQPSEQNESNINK GNLCDYGTHNILDLKKYVTDIQPSEQNESN TDIQPSEQNESNINKLRKKVNRKTEIISGM K K Y N K L 0 0 3 1 0 2 2 0 0 2 0 2 0 0 1 2 1 0 1 1 0 0 18 1 2106.0229 Q562F6;B7Z7S9 Q562F6 594 611 SGOL2 Shugoshin-like 2 yes no 3 9.9245E-05 60.062 3 0.83731 1.0424 32.957 2 Median 0.83731 1.0424 32.957 2 0 Median NaN NaN NaN 0 0 Median 12855000 6274400 6580200 12855000 6274400 6580200 0 0 0 6592 1546 6738 24135;24136;24137 36497;36498;36499;36500 36498 4 LAAAILGGVDQIHIK DDKIEYRAWNPFRSKLAAAILGGVDQIHIK LAAAILGGVDQIHIKPGAKVLYLGAASGTT K L A I K P 3 0 0 1 0 1 0 2 1 3 2 1 0 0 0 0 0 0 0 1 0 0 15 0 1517.893 Q96BS4;P22087;M0R299;M0QXL5;M0R2Q4;B4DLD4;M0R0P1;M0R2U2;M0R1H0;M0R2B0;A6NHQ2 Q96BS4 83 97 FBL;FBLL1 rRNA 2-O-methyltransferase fibrillarin;rRNA/tRNA 2-O-methyltransferase fibrillarin-like protein 1 no no 2;3 3.0063E-10 129.74 8 4 0.63371 0.83323 11.734 10 Median 0.65754 0.85433 13.661 6 0 Median 0.51561 0.81766 6.2256 4 0 Median 888160000 572120000 316040000 382240000 235270000 146970000 505920000 336850000 169070000 6593 1288;566 6739 24138;24139;24140;24141;24142;24143;24144;24145;24146;24147;24148;24149 36501;36502;36503;36504;36505;36506;36507;36508;36509;36510;36511;36512;36513;36514;36515;36516;36517;36518;36519;36520;36521 36515 21 LAAAILGGVDQIHIKPGAK DDKIEYRAWNPFRSKLAAAILGGVDQIHIK ILGGVDQIHIKPGAKVLYLGAASGTTVSHV K L A A K V 4 0 0 1 0 1 0 3 1 3 2 2 0 0 1 0 0 0 0 1 0 0 19 1 1871.0993 Q96BS4;P22087;M0R299;M0QXL5;M0R2Q4;B4DLD4;M0R0P1;M0R2U2;M0R1H0;M0R2B0 Q96BS4 83 101 FBL rRNA 2-O-methyltransferase fibrillarin yes no 3 2.2196E-39 140.81 3 2 0.73358 0.90281 9.9555 5 Median 0.75195 0.91718 2.3542 3 0 Median 0.47813 0.77077 1.2583 2 0 Median 264310000 164710000 99609000 150140000 87704000 62435000 114180000 77001000 37175000 6594 1288 6740 24150;24151;24152;24153;24154 36522;36523;36524;36525;36526;36527;36528;36529;36530;36531;36532 36528 11 LAAAVFSLAIK QPSTLTDKWYGESQKLAAAVFSLAIKLQPS ESQKLAAAVFSLAIKLQPSIIFIDEIDSFL K L A I K L 4 0 0 0 0 0 0 0 0 1 2 1 0 1 0 1 0 0 0 1 0 0 11 0 1102.675 Q8NBU5;B4E2J1 Q8NBU5 173 183 ATAD1 ATPase family AAA domain-containing protein 1 yes no 2 0.00010011 136.57 4 1 0.34737 0.44303 11.484 3 Median 0.34737 0.44303 11.484 3 0 Median NaN NaN NaN 0 0 Median 28249000 21519000 6730700 28249000 21519000 6730700 0 0 0 6595 1649 6741 24155;24156;24157;24158;24159 36533;36534;36535;36536;36537;36538;36539;36540 36535 8 LAADDFR TVDNARIVLQIDNARLAADDFRVKYETELA VLQIDNARLAADDFRVKYETELAMRQSVEN R L A F R V 2 1 0 2 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 806.39227 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__Q14525;Q6A165;CON__Q9UE12;CON__Q15323;CON__A2A5Y0;CON__Q92764;C4AM86;CON__Q14532;CON__A2AB72;CON__Q497I4;A0A024R1T2;CON__O76015;CON__O76013;CON__O76014;CON__REFSEQ:XP_986630;Q14525;Q15323;Q14532;O76014;Q92764;O76015;O76013;CON__P02533;P02533;CON__A2A4G1;CON__Q04695;Q04695;F5GWP8;CON__Q9QWL7;K7EPJ9;B4E2P9;CON__P05784;CON__P08779;P08779;B4DWU0;B4E2J5;CON__Q9Z2K1;CON__Q3ZAW8;CON__P13645;P13645;CON__P02535-1;CON__Q148H6;CON__Q7Z3Y7;Q7Z3Y7 CON__P13645 159 165 KRT18;KRTHA7;KRT35;KRTHA5;KRT33B;KRT31;KRT32;KRT37;KRT38;KRT36;KRT14;KRT17;KRT16;KRT10;KRT28 Keratin, type I cytoskeletal 18;Keratin, type I cuticular Ha3-II;Keratin, type I cuticular Ha1;Keratin, type I cuticular Ha2;Keratin, type I cuticular Ha7;Keratin, type I cuticular Ha5;Keratin, type I cuticular Ha8;Keratin, type I cuticular Ha6;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28 no no 1;2 0.0055296 124.37 6 0.11897 0.16444 5.0124 3 Plateau 0.11897 0.16444 5.0124 3 0 Plateau NaN NaN NaN 0 0 Median 320850000 295010000 25838000 320850000 295010000 25838000 0 0 0 + 6596 252;960;949;958;954;965 6742 24160;24161;24162;24163;24164;24165 36541;36542;36543;36544;36545;36546;36547;36548 36544 8 LAADFSVPLIIDIK RRLSSFVTKGYRTRRLAADFSVPLIIDIKC RLAADFSVPLIIDIKCTKLFVEALGQIGPA R L A I K C 2 0 0 2 0 0 0 0 0 3 2 1 0 1 1 1 0 0 0 1 0 0 14 0 1513.8756 Q53SY7;F8VPD4;P27708;H7C3Z5 Q53SY7 1344 1357 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 9.6505E-10 110.66 2 0.35458 0.45464 17.249 2 Median 0.35458 0.45464 17.249 2 0 Median NaN NaN NaN 0 0 Median 11049000 8042200 3007000 11049000 8042200 3007000 0 0 0 6597 1060 6743 24166;24167 36549;36550 36550 2 LAAEQELIR LEKQRQLAEGTAQQRLAAEQELIRLRAETE GTAQQRLAAEQELIRLRAETEQGEQQRQLL R L A I R L 2 1 0 0 0 1 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1041.5819 Q15149 Q15149 1846 1854 PLEC Plectin yes yes 2 1.11E-07 153.04 5 0.92443 1.2524 8.8808 2 Median 0.92443 1.2524 8.8808 2 0 Median NaN NaN NaN 0 0 Median 61118000 45489000 15629000 61118000 45489000 15629000 0 0 0 6598 1507 6744 24168;24169;24170;24171;24172 36551;36552;36553;36554;36555;36556 36556 6 LAAFADALEFADEEK LYTKSKTKMRNRRFRLAAFADALEFADEEK LAAFADALEFADEEKESPVEFTGHKLIGVY R L A E K E 5 0 0 2 0 0 3 0 0 0 2 1 0 2 0 0 0 0 0 0 0 0 15 0 1638.7777 Q5SY16 Q5SY16 471 485 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 yes yes 2 2.5748E-06 120.57 3 0.40182 0.50929 9.4548 3 Median 0.40182 0.50929 9.4548 3 0 Median NaN NaN NaN 0 0 Median 12898000 8906700 3991700 12898000 8906700 3991700 0 0 0 6599 1566 6745 24173;24174;24175 36557;36558;36559;36560;36561 36559 5 LAAIVAK VQVLVLDGRGHLLGRLAAIVAKQVLLGRKV GRGHLLGRLAAIVAKQVLLGRKVVVVRCEG R L A A K Q 3 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 7 0 684.45341 Q53H34;P40429;M0QYS1;B4DNC8;M0QZU1;A0A096LPE0;Q9BSQ6 Q53H34 19 25 RPL13A 60S ribosomal protein L13a no no 2 0.017816 80.377 3 2 0.65216 0.99443 7.6732 5 Median 0.70179 0.92984 9.1235 3 0 Median 0.64897 0.99966 0.74157 2 0 Median 1078500000 606090000 472440000 1027800000 576170000 451580000 50781000 29920000 20862000 6600 1332;1712 6746 24176;24177;24178;24179;24180 36562;36563;36564;36565;36566;36567 36564 6 LAALEEQR EEDAEAGSEKEEEARLAALEEQRMEGKKPR EKEEEARLAALEEQRMEGKKPRVMAGTLKL R L A Q R M 2 1 0 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 928.49779 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6;H7C267 B5MCF9 479 486 PES1 Pescadillo homolog yes no 2 6.5609E-15 139.68 4 1 1.0184 1.38 33.871 2 Median 1.0184 1.38 33.871 2 0 Median NaN NaN NaN 0 0 Median 115310000 76772000 38536000 104580000 66045000 38536000 10728000 10728000 0 6601 735 6747 24181;24182;24183;24184;24185 36568;36569;36570;36571;36572;36573;36574 36573 7 LAALEEQRMEGK EEDAEAGSEKEEEARLAALEEQRMEGKKPR EARLAALEEQRMEGKKPRVMAGTLKLEDKQ R L A G K K 2 1 0 0 0 1 3 1 0 0 2 1 1 0 0 0 0 0 0 0 0 0 12 1 1373.6973 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6;H7C267 B5MCF9 479 490 PES1 Pescadillo homolog yes no 2 0.013133 73.887 2 0.66144 1.0734 4.7265 2 Median NaN NaN NaN 0 0 Median 0.66144 1.0734 4.7265 2 0 Median 32978000 19388000 13590000 0 0 0 32978000 19388000 13590000 6602 735 6748 24186;24187 36575;36576;36577 36577 254 3 LAALEQNVER PQRKTTNPLDLAVMRLAALEQNVERRYLRE LAVMRLAALEQNVERRYLREPLWPTHEVVL R L A E R R 2 1 1 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1141.6091 J3QK86;J3KPG5;F8VU39;Q9UIF9;A0A0C4DGI9 J3QK86 1558 1567 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 0.00016882 105.1 4 1 0.67798 0.93822 27.051 5 Median 0.64208 0.8856 24.269 4 0 Median 0.84956 1.1967 NaN 1 0 Median 47095000 27042000 20052000 39158000 23119000 16039000 7936400 3923000 4013400 6603 1062 6749 24188;24189;24190;24191;24192 36578;36579;36580;36581;36582;36583;36584 36583 7 LAALGGGAGPGAAEPEQR VPAWKREILERKRAKLAALGGGAGPGAAEP LGGGAGPGAAEPEQRVLAESLGPLRENPFM K L A Q R V 5 1 0 0 0 1 2 5 0 0 2 0 0 0 2 0 0 0 0 0 0 0 18 0 1620.822 Q4KMQ1 Q4KMQ1 30 47 TPRN Taperin yes yes 2 2.35E-08 98.368 2 1.1164 1.5264 35.187 2 Median 1.1164 1.5264 35.187 2 0 Median NaN NaN NaN 0 0 Median 5756800 2568200 3188700 5756800 2568200 3188700 0 0 0 6604 1535 6750 24193;24194 36585;36586;36587;36588;36589 36589 5 LAALNPESNTAGLDIFAK EEFLEAVLCPPRYPKLAALNPESNTAGLDI LNPESNTAGLDIFAKFSAYIKNSNPALNDN K L A A K F 4 0 2 1 0 0 1 1 0 1 3 1 0 1 1 1 1 0 0 0 0 0 18 0 1843.968 Q5SRT3;Q53FB0;O00299 Q5SRT3 96 113 CLIC1 Chloride intracellular channel protein;Chloride intracellular channel protein 1 yes no 2 7.252E-24 159.5 4 0.5182 0.65745 13.754 4 Median 0.5182 0.65745 13.754 4 0 Median NaN NaN NaN 0 0 Median 44680000 29307000 15373000 44680000 29307000 15373000 0 0 0 6605 1166 6751 24195;24196;24197;24198 36590;36591;36592;36593;36594;36595;36596 36591 7 LAALPNVYEVISK FAGAVSPQEEEEFRRLAALPNVYEVISKSI RRLAALPNVYEVISKSIAPSIFGGTDMKKA R L A S K S 2 0 1 0 0 0 1 0 0 1 2 1 0 0 1 1 0 0 1 2 0 0 13 0 1415.8024 Q53FG5;B1AHB0;A8K521;P33992;B1AHB1;B4DQ39;B4DVK5;B3KVF0;Q59F49 Q53FG5 325 337 MCM5 DNA helicase;DNA replication licensing factor MCM5 yes no 2 3.2468E-06 93.258 3 1 0.33583 0.42449 16.086 2 Median 0.33583 0.42449 16.086 2 0 Median NaN NaN NaN 0 0 Median 46865000 30449000 16416000 37361000 30449000 6912800 9503100 0 9503100 6606 612 6752 24199;24200;24201;24202 36597;36598;36599;36600;36601 36600 5 LAALSASLAR GEGTYALDSESCMEKLAALSASLARVVVPA SCMEKLAALSASLARVVVPATEEEAEVDEF K L A A R V 4 1 0 0 0 0 0 0 0 0 3 0 0 0 0 2 0 0 0 0 0 0 10 0 971.57638 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6 B5MCF9 259 268 PES1 Pescadillo homolog yes no 2 2.0456E-05 106.6 3 2 0.76555 1.073 4.6733 5 Median 0.82075 1.1249 5.7143 3 0 Median 0.65963 1.0593 1.8267 2 0 Median 212030000 118370000 93664000 119330000 64424000 54908000 92698000 53941000 38756000 6607 735 6753 24203;24204;24205;24206;24207 36602;36603;36604;36605;36606;36607;36608;36609;36610 36610 9 LAANISGDK LHNDRVYYVSEKIMKLAANISGDKLVSLGT SEKIMKLAANISGDKLVSLGTCFGKFTKTH K L A D K L 2 0 1 1 0 0 0 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 9 0 887.47125 Q9Y221;B3KM49;J3QLW7 Q9Y221 54 62 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog yes no 2 0.00059861 113.26 2 0.67745 0.85235 1.5795 2 Median 0.67745 0.85235 1.5795 2 0 Median NaN NaN NaN 0 0 Median 43979000 24808000 19171000 43979000 24808000 19171000 0 0 0 6608 1800 6754 24208;24209 36611;36612;36613 36611 3 LAAPLLK ILLANKKDLEEAEGRLAAPLLKRLSLSTSK DLEEAEGRLAAPLLKRLSLSTSKLNSLAIG R L A L K R 2 0 0 0 0 0 0 0 0 0 3 1 0 0 1 0 0 0 0 0 0 0 7 0 724.48471 P54886 P54886 418 424 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.035155 56.51 1 1 2.0047 2.9529 NaN 1 Median NaN NaN NaN 0 0 Median 2.0047 2.9529 NaN 1 0 Median 8509500 3035400 5474200 0 0 0 8509500 3035400 5474200 6609 1375 6755 24210;24211 36614;36615 36614 2 LAAQSCALSLVR LGRRIFAREHGSNKKLAAQSCALSLVRQLY NKKLAAQSCALSLVRQLYHLGVVEAYSGLT K L A V R Q 3 1 0 0 1 1 0 0 0 0 3 0 0 0 0 2 0 0 0 1 0 0 12 0 1287.6969 Q08211;Q58F26;Q6PJK6 Q08211 237 248 DHX9 ATP-dependent RNA helicase A yes no 2 2.2342E-16 146.11 4 2 0.68504 0.94216 30.004 6 Median 0.70613 0.96629 3.4225 4 0 Median 0.35222 0.5517 14.91 2 0 Median 492790000 301380000 191400000 437520000 259580000 177940000 55263000 41799000 13464000 6610 1448 6756 24212;24213;24214;24215;24216;24217 36616;36617;36618;36619;36620;36621;36622;36623;36624;36625 36619 10 LAAQSLDTSGLR RMAAESRRVLLLAGRLAAQSLDTSGLRHVQ AGRLAAQSLDTSGLRHVQLAFFPPGTVHPL R L A L R H 2 1 0 1 0 1 0 1 0 0 3 0 0 0 0 2 1 0 0 0 0 0 12 0 1230.6568 P07199 P07199 299 310 CENPB Major centromere autoantigen B yes yes 2 4.6155E-22 162.64 4 2 0.86725 1.2368 8.2309 6 Median 0.87593 1.1832 5.282 4 0 Median 0.85345 1.3723 3.4961 2 0 Median 204400000 112540000 91860000 110820000 61433000 49392000 93579000 51110000 42469000 6611 1239 6757 24218;24219;24220;24221;24222;24223 36626;36627;36628;36629;36630;36631;36632;36633;36634;36635;36636;36637 36633 12 LAAQSQHVGFAR SPTSISSSAAAGLQRLAAQSQHVGFARSVV LQRLAAQSQHVGFARSVVKLKCQHCNRLFA R L A A R S 3 1 0 0 0 2 0 1 1 0 1 0 0 1 0 1 0 0 0 1 0 0 12 0 1283.6735 Q5VZL5;H7C1I7 Q5VZL5 669 680 ZMYM4 Zinc finger MYM-type protein 4 yes no 3 0.0002307 56.225 2 1.0127 1.4719 6.8831 2 Median NaN NaN NaN 0 0 Median 1.0127 1.4719 6.8831 2 0 Median 13847000 6228500 7618200 0 0 0 13847000 6228500 7618200 6612 1580 6758 24224;24225 36638;36639;36640 36640 3 LAASASTQQLQEVK HQQSGSELALRRSQRLAASASTQQLQEVKA RLAASASTQQLQEVKAKLQQCKAELNSTTE R L A V K A 3 0 0 0 0 3 1 0 0 0 2 1 0 0 0 2 1 0 0 1 0 0 14 0 1472.7835 O95235 O95235 680 693 KIF20A Kinesin-like protein KIF20A yes yes 2 2.0121E-118 294.01 4 2 0.8387 1.0627 17.026 6 Median 0.85611 1.0733 2.5552 4 0 Median 0.49074 0.77876 1.3269 2 0 Median 214430000 121290000 93134000 139310000 70485000 68823000 75117000 50806000 24311000 6613 1215 6759 24226;24227;24228;24229;24230;24231 36641;36642;36643;36644;36645;36646;36647;36648;36649;36650;36651;36652;36653 36644 13 LAASGEGGLQELSGHFENQK DWALYTYEDGSDDLKLAASGEGGLQELSGH EGGLQELSGHFENQKVMYGFCSVKDSQAAL K L A Q K V 2 0 1 0 0 2 3 4 1 0 3 1 0 1 0 2 0 0 0 0 0 0 20 0 2070.997 Q16643;D6RFI1 Q16643 43 62 DBN1 Drebrin yes no 3 9.3904E-47 154.26 4 2 0.83729 1.063 70.014 5 Median 0.80104 0.99541 6.7123 3 0 Median 2.3472 3.5225 17.983 2 0 Median 129490000 55676000 73814000 107230000 48733000 58502000 22255000 6942600 15313000 6614 1523 6760 24232;24233;24234;24235;24236;24237 36654;36655;36656;36657;36658;36659;36660;36661;36662;36663 36659 10 LAATNALLNSLEFTK IIQGMRKEEPSNNVKLAATNALLNSLEFTK LAATNALLNSLEFTKANFDKESERHFIMQV K L A T K A 3 0 2 0 0 0 1 0 0 0 4 1 0 1 0 1 2 0 0 0 0 0 15 0 1604.8774 B2RBR9;Q14974;B7Z5M1;J3KTM9;B7Z752 B2RBR9 192 206 KPNB1 Importin subunit beta-1 yes no 2 2.4666E-06 120.87 1 3.3446 4.258 NaN 1 Median 3.3446 4.258 NaN 1 0 Median NaN NaN NaN 0 0 Median 5545900 1240400 4305500 5545900 1240400 4305500 0 0 0 6615 730 6761 24238 36664 36664 1 LAAVALINAAIQK GVDAANSAAQQYQRRLAAVALINAAIQKGV RRLAAVALINAAIQKGVAEKTVLELMNPEA R L A Q K G 5 0 1 0 0 1 0 0 0 2 2 1 0 0 0 0 0 0 0 1 0 0 13 0 1294.7973 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;Q6P1N4 A4QPB0 389 401 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 4.65E-06 137.14 1 0.46402 0.61199 NaN 1 Median 0.46402 0.61199 NaN 1 0 Median NaN NaN NaN 0 0 Median 1994200 1167700 826500 1994200 1167700 826500 0 0 0 6616 287 6762 24239 36665 36665 1 LACDFLAR HDAYSQAHLTLMALRLACDFLARGGSFITK LTLMALRLACDFLARGGSFITKVFRSRDYQ R L A A R G 2 1 0 1 1 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 964.48004 Q8IY81;J3KS36 Q8IY81 143 150 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 0.0080124 79.116 2 0.40894 0.58672 10.855 2 Median NaN NaN NaN 0 0 Median 0.40894 0.58672 10.855 2 0 Median 15879000 10762000 5116500 0 0 0 15879000 10762000 5116500 6617 1628 6763 24240;24241 36666;36667 36667 2 LACDVDQVTR PMYQLYKRTFPVLLRLACDVDQVTRQLYEP PVLLRLACDVDQVTRQLYEPLVMQLIHWFT R L A T R Q 1 1 0 2 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 10 0 1175.5605 P78527;B4DL41 P78527 972 981 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.0043554 90.906 2 2 0.50393 0.71066 21.688 3 Median 0.39051 0.52443 NaN 1 0 Median 0.51989 0.75314 8.2093 2 0 Median 33568000 23804000 9764100 18150000 13656000 4494200 15417000 10147000 5269900 6618 1427 6764 24242;24243;24244;24245 36668;36669;36670;36671 36671 4 LADALQELR LVEIDNGKQREFESRLADALQELRAQHEDQ REFESRLADALQELRAQHEDQVEQYKKELE R L A L R A 2 1 0 1 0 1 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1027.5662 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;Q5TCI8;H0YAB0 P02545 241 249 LMNA Prelamin-A/C;Lamin-A/C yes no 2 1.5784E-11 185.72 4 2 0.60369 0.8373 61.362 6 Median 0.58801 0.81038 3.7972 4 0 Median 1.6215 2.6612 2.8762 2 0 Median 976530000 556940000 419590000 711800000 450400000 261400000 264730000 106540000 158200000 6619 1229 6765 24246;24247;24248;24249;24250;24251 36672;36673;36674;36675;36676;36677;36678;36679;36680;36681;36682;36683 36683 12 LADDLSTLQEK RALQQVQEKEVRAQKLADDLSTLQEKMAAT RAQKLADDLSTLQEKMAATSKEVARLETLV K L A E K M 1 0 0 2 0 1 1 0 0 0 3 1 0 0 0 1 1 0 0 0 0 0 11 0 1231.6296 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q9UPG3;Q4LE64;Q14980 Q4LE64 898 908 NUMA1;NuMA;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 3.2502E-07 147.75 5 0.77824 0.99118 13.986 2 Median 0.77824 0.99118 13.986 2 0 Median NaN NaN NaN 0 0 Median 72463000 45741000 26722000 72463000 45741000 26722000 0 0 0 6620 148;1499 6766 24252;24253;24254;24255;24256 36684;36685;36686;36687;36688;36689;36690;36691;36692 36685 9 LADFGLAR LKPQNLLIDDKGTIKLADFGLARAFGIPIR DDKGTIKLADFGLARAFGIPIRVYTHEAIT K L A A R A 2 1 0 1 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 861.47085 A0A024QZP7;P06493;Q5H9N4;A0A087WZZ9;I6L9I5;E5RIU6;K7ELV5;F8VXD2;B3KX76;F8VYH9;F8VZZ0;F8VTV8;F8VWX7;F8VZ51;Q6LC83;Q8IWB3;H0YAZ9;Q9BWF9;A0A024RBB6;Q9BVE2;E7EUK8;B4DK59;B5BU53;B2R9L6;A0A024R880;B4DHU6;B4DER5;E5RGN0;Q96GA5;A0A087X209;Q59G02;Q9BRL4;A0A087WZU2;F5H6Z0;B4DGP5;A0A024R996;A0A140VK97;A0A024R183;B4DK03;A0A024R980;A0A024RBH0;B7Z8T0;J3QSD7;A0A024RA66;A0A024RA85;P11802;Q00534;P50750;Q96Q40;O94921;Q07002;Q00536;Q00537;Q9NYV4;Q14004;E7ESI2;B4DDL9;A0A024RB10;A0A024RB77;G3V5T9;P24941;A0A024R8R3;Q00526;K7EJ83 A0A024QZP7 144 151 CDC2;CDK1;DKFZp686L20222;CDK3;CDK4;PCTK3;CDK16;CDK13;CDK14;CDK9;PCTK1;CDK17;PCTK2;CDK12;CDC2L5;CDK6;CDK15;CDK18;CDK2 Cyclin-dependent kinase 1;Cyclin-dependent kinase 4;Cyclin-dependent kinase 6;Cyclin-dependent kinase 9;Cyclin-dependent kinase 15;Cyclin-dependent kinase 14;Cyclin-dependent kinase 18;Cyclin-dependent kinase 16;Cyclin-dependent kinase 17;Cyclin-dependent kinase 12;Cyclin-dependent kinase 13;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 no no 2 0.010024 101.69 3 2 0.6283 0.85471 46.799 5 Median 0.60398 0.83745 3.1539 3 0 Median 1.2312 1.951 3.7419 2 0 Median 219470000 127100000 92367000 148110000 97687000 50423000 71358000 29414000 41944000 6621 18;254 6767 24257;24258;24259;24260;24261 36693;36694;36695;36696;36697;36698;36699;36700 36693 8 LADFGVAGQLTDTQIK IKAANVLLSEQGDVKLADFGVAGQLTDTQI ADFGVAGQLTDTQIKRNTFVGTPFWMAPEV K L A I K R 2 0 0 2 0 2 0 2 0 1 2 1 0 1 0 0 2 0 0 1 0 0 16 0 1675.8781 Q9NWX4;Q8NBY1;B4E0Y9;Q9P289;Q499L9;C9JDH9;C9J6L2;C9JCC0;C9J232;H7C279;Q5CZ67;B4E185;B4DMA5;B4DMR0;B3KRS6;A0A0S2Z4Y2;B4DVS7;H0Y630;B4DR80;Q96BA2;A0A024R4B2;Q6P0Y1;Q5U0E6;B4DT57;O00506;Q9Y6E0;C9JJV0 Q9NWX4 37 52 STK26;MST4;STK25;DKFZp686J1430;STK24;HEL-S-95 Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 25;Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit yes no 2 5.4456E-10 166.7 3 1 0.48407 0.60961 11.775 3 Plateau 0.48407 0.60961 11.775 3 0 Plateau NaN NaN NaN 0 0 Median 38874000 21565000 17308000 31501000 21565000 9935800 7372700 0 7372700 6622 886 6768 24262;24263;24264;24265 36701;36702;36703;36704;36705;36706;36707;36708;36709 36702 9 LADFGVLHR MFDHRPRSWRELPLRLADFGVLHRNELSGA RELPLRLADFGVLHRNELSGALTGLTRVRR R L A H R N 1 1 0 1 0 0 0 1 1 0 2 0 0 1 0 0 0 0 0 1 0 0 9 0 1026.5611 Q5M7Z9;Q53GX7;P26639;B4DKZ9;B3KTN2;B2RDX5 Q5M7Z9 434 442 TARS Threonine--tRNA ligase, cytoplasmic yes no 3 0.0161 62.582 2 0.35694 0.50578 39.008 2 Median 0.35694 0.50578 39.008 2 0 Median NaN NaN NaN 0 0 Median 8061700 6186600 1875100 8061700 6186600 1875100 0 0 0 6623 1298 6769 24266;24267 36710;36711;36712 36710 3 LADPVTPVETILQR SEVGTILRNCVHVQKLADPVTPVETILQRC KLADPVTPVETILQRCNLEEISNYYGVSGF K L A Q R C 1 1 0 1 0 1 1 0 0 1 2 0 0 0 2 0 2 0 0 2 0 0 14 0 1550.8668 Q05DU1;A0A024R9Y6;Q9NVN8 Q05DU1 328 341 GNL3L Guanine nucleotide-binding protein-like 3-like protein yes no 2 9.9253E-05 95.094 3 0.45344 0.63047 19.287 2 Median 0.45344 0.63047 19.287 2 0 Median NaN NaN NaN 0 0 Median 15273000 10363000 4909800 15273000 10363000 4909800 0 0 0 6624 233 6770 24268;24269;24270 36713;36714;36715;36716 36716 4 LADRESALASADLEEEIHQK KKVKAKKKHTNAEKKLADRESALASADLEE SALASADLEEEIHQKQGQKRKNSQPGVKVA K L A Q K Q 4 1 0 2 0 1 4 0 1 1 3 1 0 0 0 2 0 0 0 0 0 0 20 1 2224.0972 P42696;A2A2V2 P42696 119 138 RBM34 RNA-binding protein 34 yes no 4 0.011882 44.735 1 1.1324 1.5231 NaN 1 Median 1.1324 1.5231 NaN 1 0 Median NaN NaN NaN 0 0 Median 6125200 3144200 2981000 6125200 3144200 2981000 0 0 0 6625 1339 6771 24271 36717 36717 1 LAEDAPNFDGPAAEGQPGQK EEPKYSSLYAQLCLRLAEDAPNFDGPAAEG PNFDGPAAEGQPGQKQSTTFRRLLISKLQD R L A Q K Q 4 0 1 2 0 2 2 3 0 0 1 1 0 1 3 0 0 0 0 0 0 0 20 0 2010.9283 D3DQV9;Q59G42;B4DZF2;P78344;H0Y3P2;H0YCH5;H0YEC5;H0YD77 D3DQV9 139 158 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 1.1437E-25 164.7 5 1 0.39268 0.49785 135.53 4 Median 0.39137 0.4962 21.623 3 0 Median 4.5885 6.4572 NaN 1 0 Median 29632000 19269000 10363000 23596000 17787000 5808800 6035500 1481400 4554100 6626 877 6772 24272;24273;24274;24275;24276;24277 36718;36719;36720;36721;36722;36723 36719 6 LAEDEAFQRR IALKEKEAENERLRRLAEDEAFQRRRLEEQ ERLRRLAEDEAFQRRRLEEQAAQHKADIEE R L A R R R 2 2 0 1 0 1 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 10 1 1233.6102 Q15149 Q15149 2006 2015 PLEC Plectin yes yes 3 0.029047 32.008 1 0.76997 0.99179 NaN 1 Median 0.76997 0.99179 NaN 1 0 Median NaN NaN NaN 0 0 Median 6593700 3046900 3546800 6593700 3046900 3546800 0 0 0 6627 1507 6773 24278 36724 36724 1 LAEDEGDSEPEAVGQSR GHPYVRRKRKKFPDRLAEDEGDSEPEAVGQ EDEGDSEPEAVGQSRGRRQKK_________ R L A S R G 2 1 0 2 0 1 4 2 0 0 1 0 0 0 1 2 0 0 0 1 0 0 17 0 1787.781 Q9UIG0 Q9UIG0 1461 1477 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 1.5248E-32 176.87 4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71888000 0 71888000 23334000 0 23334000 48554000 0 48554000 6628 1786 6774 24279;24280;24281;24282;24283;24284 36725;36726;36727;36728;36729;36730;36731 36731 7 LAEIGAPIQGNREELVER PGHYGAWAAQELQAKLAEIGAPIQGNREEL IGAPIQGNREELVERLQSYTRQTGIVLNRP K L A E R L 2 2 1 0 0 1 4 2 0 2 2 0 0 0 1 0 0 0 0 1 0 0 18 1 1993.0593 Q13435;Q7Z3K9;E9PPJ0;E9PJ04;H0YCG1;E9PJT3 Q13435 36 53 SF3B2;DKFZp781L0540 Splicing factor 3B subunit 2 yes no 3 0.00013171 47.568 2 1.048 1.3707 9.6698 2 Median 1.048 1.3707 9.6698 2 0 Median NaN NaN NaN 0 0 Median 13392000 6450400 6941900 13392000 6450400 6941900 0 0 0 6629 1470 6775 24285;24286 36732;36733;36734;36735;36736;36737 36733 6 LAELEEALQK AEQRGELALKDARNKLAELEEALQKAKQDM DARNKLAELEEALQKAKQDMARLLREYQEL K L A Q K A 2 0 0 0 0 1 3 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1142.6183 CON__P13647;P13647;B4E1T1;B4DL32;H0YI76 CON__P13647 432 441 KRT5 Keratin, type II cytoskeletal 5 yes no 2 1.7946E-42 209.19 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6280600 6280600 0 6280600 6280600 0 0 0 0 + 6630 961 6776 24287 36738 36738 1 LAELLTQQHGLQCR DAEAVQRVRAAFQLRLAELLTQQHGLQCRA RLAELLTQQHGLQCRATATHTDVLKDGFVF R L A C R A 1 1 0 0 1 3 1 1 1 0 4 0 0 0 0 0 1 0 0 0 0 0 14 0 1665.8621 Q9H6R4;A0A0A0MRW6;B4DF80;B3KPN5 Q9H6R4 765 778 NOL6 Nucleolar protein 6 yes no 3 3.3473E-10 146.36 4 2 0.92006 1.2342 5.7588 5 Median 0.94244 1.2688 6.362 4 0 Median 0.85567 1.2342 NaN 1 0 Median 124000000 65996000 58000000 106390000 53803000 52589000 17603000 12193000 5410300 6631 1738 6777 24288;24289;24290;24291;24292;24293 36739;36740;36741;36742;36743;36744;36745;36746;36747;36748 36741 10 LAELQEQLK SDSGSSDSEEERATRLAELQEQLKAVHEQL EERATRLAELQEQLKAVHEQLAALSQAPVN R L A L K A 1 0 0 0 0 2 2 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1070.5972 A0A024R8H6;Q15059;B4DS09;A0A140F1N4;W8JJB1;Q6PIS5;Q6NXE4;Q05BM2;Q5BJ26;M0QZD9;O60885;A0A024R7H8 O60885 463 471 BRD3;BRD4 Bromodomain-containing protein 3;Bromodomain-containing protein 4 no no 2 0.010734 102.51 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6632 198;1194 6778 24294 36749 36749 1 LAELQEQLR EESESSDSEEERAHRLAELQEQLRAVHEQL EERAHRLAELQEQLRAVHEQLAALSQGPIS R L A L R A 1 1 0 0 0 2 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1098.6033 A0A024RCR5;A0A0G2JK44;P25440;H0Y6K2;A0A140T9E9;X5CF57;A0A0G2JHN8;A0A140T9I1;A0A140T9V2;U3KQA6;A0A0G2JHL0;A0A140T9F7 A0A024RCR5 520 528 BRD2 Bromodomain-containing protein 2 yes no 2 0.0030321 67.993 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6633 300 6779 24295 36750 36750 1 LAENIDAQLK IYLQHADEEREKTYKLAENIDAQLKRMAQD EKTYKLAENIDAQLKRMAQDLKDIIEHLNT K L A L K R 2 0 1 1 0 1 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1113.603 M0QXN5;A0A024QZF1;P37198 M0QXN5 360 369 NUP62;hCG_19665 Nuclear pore glycoprotein p62 yes no 2 0.0036564 66.621 1 0.37906 0.49051 NaN 1 Median 0.37906 0.49051 NaN 1 0 Median NaN NaN NaN 0 0 Median 4751600 3603900 1147700 4751600 3603900 1147700 0 0 0 6634 12 6780 24296 36751 36751 1 LAEPQLR YKMVKGFSNRARKARLAEPQLREENDLGLF SNRARKARLAEPQLREENDLGLFGYWQTEE R L A L R E 1 1 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 7 0 825.47085 A0A024R2M8;X5DRB1;A8K146;Q01831;D9I4E1;D2CPK7;D2CPK0;D2CPI8 A0A024R2M8 719 725 XPC DNA repair protein complementing XP-C cells no no 2 0.050614 50.632 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6635 89;976 6781 24297 36752 36752 1 LAESLLALSQQEELADLPK ______________________________ LLALSQQEELADLPKDYLLSESEDEGDNDG R L A P K D 3 0 0 1 0 2 3 0 0 0 6 1 0 0 1 2 0 0 0 0 0 0 19 0 2067.11 Q9BVJ6 Q9BVJ6 6 24 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes yes 2 5.992E-163 314.45 4 2 1.0463 1.2975 10.745 6 Median 1.068 1.3345 4.573 4 0 Median 0.70678 1.1234 10.144 2 0 Median 308450000 167090000 141360000 114900000 55814000 59090000 193540000 111270000 82270000 6636 1719 6782 24298;24299;24300;24301;24302;24303 36753;36754;36755;36756;36757;36758;36759;36760;36761;36762 36754 10 LAETQEEISAEVAAK FIADCDRRTEVAKKRLAETQEEISAEVAAK LAETQEEISAEVAAKAERVHELNEEIGKLL R L A A K A 4 0 0 0 0 1 4 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 15 0 1587.7992 A0A0A6YYJ8;Q9Y383;B3KRR1;B3KSL5 A0A0A6YYJ8 174 188 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes no 2 0.001096 84.821 1 2 0.95173 1.3478 3.4863 2 Median NaN NaN NaN 0 0 Median 0.95173 1.3478 3.4863 2 0 Median 10140000 5276700 4863200 0 0 0 10140000 5276700 4863200 6637 409 6783 24304;24305;24306 36763;36764;36765 36764 3 LAEVEAALEK EERLAEQQRAEERERLAEVEAALEKQRQLA EERERLAEVEAALEKQRQLAEAHAQAKAQA R L A E K Q 3 0 0 0 0 0 3 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1071.5812 Q15149 Q15149 1499 1508 PLEC Plectin yes yes 2 8.5056E-08 143.37 4 0.99845 1.2556 7.6469 4 Median 0.99845 1.2556 7.6469 4 0 Median NaN NaN NaN 0 0 Median 61753000 30506000 31247000 61753000 30506000 31247000 0 0 0 6638 1507 6784 24307;24308;24309;24310 36766;36767;36768;36769;36770;36771;36772;36773 36770 8 LAFIDPATGK GIRYEVGPPTLCCLKLAFIDPATGKLMDKS LCCLKLAFIDPATGKLMDKSFSIRYHDMPD K L A G K L 2 0 0 1 0 0 0 1 0 1 1 1 0 1 1 0 1 0 0 0 0 0 10 0 1031.5651 Q9NSI6;Q5R2U7;H7C409;H7BZR9 Q9NSI6 1024 1033 BRWD1;WDR9 Bromodomain and WD repeat-containing protein 1 yes no 2 0.00823 71.614 4 0.77023 0.92903 9.5215 3 Median 0.77023 0.92903 9.5215 3 0 Median NaN NaN NaN 0 0 Median 35255000 22374000 12881000 35255000 22374000 12881000 0 0 0 6639 1758 6785 24311;24312;24313;24314 36774;36775;36776;36777 36777 4 LAFLDPDTGK GIKYEVGLPTLCCLKLAFLDPDTGKLTGGS LCCLKLAFLDPDTGKLTGGSFTMKYHDMPD K L A G K L 1 0 0 2 0 0 0 1 0 0 2 1 0 1 1 0 1 0 0 0 0 0 10 0 1075.555 Q8WWQ0 Q8WWQ0 1023 1032 PHIP PH-interacting protein yes yes 2 4.6552E-05 109.48 4 2 0.76886 1.1698 0.90994 3 Median 0.92441 1.1675 NaN 1 0 Median 0.76836 1.1784 1.0379 2 0 Median 145830000 94348000 51485000 97644000 68440000 29204000 48189000 25908000 22281000 6640 1668 6786 24315;24316;24317;24318;24319;24320 36778;36779;36780;36781;36782;36783;36784;36785;36786 36780 9 LAFLNVQAAEEALPR EYACTAVDMISRRTRLAFLNVQAAEEALPR LAFLNVQAAEEALPRIVELMGRELNWDDYK R L A P R I 4 1 1 0 0 1 2 0 0 0 3 0 0 1 1 0 0 0 0 1 0 0 15 0 1640.8886 B7Z601;Q53T76;A8K1Z2;A0A140VJK2;P43304 B7Z601 331 345 GPD2 Glycerol-3-phosphate dehydrogenase;Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 2 2.9341E-20 172.17 3 0.39725 0.54024 NaN 1 Median 0.39725 0.54024 NaN 1 0 Median NaN NaN NaN 0 0 Median 7553500 5598900 1954600 7553500 5598900 1954600 0 0 0 6641 497 6787 24321;24322;24323 36787;36788;36789;36790 36788 3 LAFVIR MARKAGNFYVPAEPKLAFVIRIRGINGVSP NFYVPAEPKLAFVIRIRGINGVSPKVRKVL K L A I R I 1 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 6 0 717.45375 A0A024R814;P18124;A8MUD9;O95036;C9JIJ5;C9JZ88 A0A024R814 100 105 RPL7;WUGSC:H_RG054D04.1 60S ribosomal protein L7 yes no 2 0.019667 130.16 3 1 0.70523 1.0314 6.7451 4 Median 0.72529 0.99389 6.6229 3 0 Median 0.68573 1.0831 NaN 1 0 Median 405350000 233330000 172020000 363930000 208650000 155280000 41415000 24678000 16737000 6642 189 6788 24324;24325;24326;24327 36791;36792;36793;36794;36795 36791 5 LAGANPAVITCDELLLGHEK KNWYPRQKICYAKRKLAGANPAVITCDELL PAVITCDELLLGHEKAPAFRDYVAVARGSK K L A E K A 3 0 1 1 1 0 2 2 1 1 4 1 0 0 1 0 1 0 0 1 0 0 20 0 2120.0936 P78527 P78527 4051 4070 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 8.4373E-14 63.578 1 1 0.60862 0.82595 20.436 2 Median 0.58611 0.71481 NaN 1 0 Median 0.63199 0.95436 NaN 1 0 Median 46357000 30166000 16191000 30620000 21440000 9180600 15737000 8726600 7010200 6643 1427 6789 24328;24329 36796;36797;36798 36797 3 LAGAQQVQTQIQVAK LKTQFLTTPISQAQKLAGAQQVQTQIQVAK LAGAQQVQTQIQVAKLPQVVQQQTPVASIQ K L A A K L 3 0 0 0 0 5 0 1 0 1 1 1 0 0 0 0 1 0 0 2 0 0 15 0 1581.8839 Q96L91;A0A0A0MR70 Q96L91 3032 3046 EP400 E1A-binding protein p400 yes no 2 3.6941E-35 203.03 3 0.73222 0.93094 NaN 1 Median 0.73222 0.93094 NaN 1 0 Median NaN NaN NaN 0 0 Median 2838300 1796100 1042200 2838300 1796100 1042200 0 0 0 6644 1692 6790 24330;24331;24332 36799;36800;36801;36802 36800 4 LAGATLLIFANK QDCQRELQSLLVEERLAGATLLIFANKQDL EERLAGATLLIFANKQDLPGALSSNAIREV R L A N K Q 3 0 1 0 0 0 0 1 0 1 3 1 0 1 0 0 1 0 0 0 0 0 12 0 1230.7336 Q53YD8;P36404 Q53YD8 115 126 hCG_23373;ARL2 ADP-ribosylation factor-like protein 2 yes no 2 0.0021509 98.048 3 0.55629 0.712 21.815 3 Median 0.55629 0.712 21.815 3 0 Median NaN NaN NaN 0 0 Median 5380700 3706900 1673900 5380700 3706900 1673900 0 0 0 6645 1323 6791 24333;24334;24335 36803;36804;36805 36803 3 LAGELQLLLEEIK KTAELQEELSGEKNRLAGELQLLLEEIKSS NRLAGELQLLLEEIKSSKDQLKELTLENSE R L A I K S 1 0 0 0 0 1 3 1 0 1 5 1 0 0 0 0 0 0 0 0 0 0 13 0 1467.8548 P49454;Q9UHT7;A0A087WTY4 P49454 2742 2754 CENPF Centromere protein F yes no 2 7.2265E-20 179.94 4 0.75836 0.94801 18.045 3 Plateau 0.75836 0.94801 18.045 3 0 Plateau NaN NaN NaN 0 0 Median 18573000 10175000 8398500 18573000 10175000 8398500 0 0 0 6646 1351 6792 24336;24337;24338;24339 36806;36807;36808;36809;36810;36811 36807 6 LAGESESNLRK GAFFFLINGPEIMSKLAGESESNLRKAFEE IMSKLAGESESNLRKAFEEAEKNAPAIIFI K L A R K A 1 1 1 0 0 0 2 1 0 0 2 1 0 0 0 2 0 0 0 0 0 0 11 1 1202.6255 V9HW80;P55072;Q96IF9;Q9HAP1 V9HW80 278 288 HEL-S-70;VCP Transitional endoplasmic reticulum ATPase yes no 2 0.0036197 99.688 1 0.28296 0.3648 NaN 1 Median 0.28296 0.3648 NaN 1 0 Median NaN NaN NaN 0 0 Median 993810 757820 235990 993810 757820 235990 0 0 0 6647 1376 6793 24340 36812 36812 1 LAGFLDLTEQEFR IRSFLKLYTTMPVAKLAGFLDLTEQEFRIQ AKLAGFLDLTEQEFRIQLLVFKHKMKNLVW K L A F R I 1 1 0 1 0 1 2 1 0 0 3 0 0 2 0 0 1 0 0 0 0 0 13 0 1537.7777 B0QY90;B4DQF6;B3KPB9;B0QY89;Q9Y262;Q7Z5X3;Q8N7H0;B3KNG0 B0QY90 377 389 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2 0.00044423 86.014 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5134900 5134900 0 5134900 5134900 0 0 0 0 6648 666 6794 24341;24342 36813;36814 36814 2 LAGGNDVGIFVAGVLEDSPAAK MKLVKFRKGDSVGLRLAGGNDVGIFVAGVL GIFVAGVLEDSPAAKEGLEEGDQILRVNNV R L A A K E 4 0 1 2 0 0 1 4 0 1 2 1 0 1 1 1 0 0 0 3 0 0 22 0 2099.0899 A0A087X0K9;Q6MZU1;G5E9E7;A9CQZ8;G3V1L9;Q07157;Q68DX9 A0A087X0K9 425 446 TJP1;DKFZp686A1195;DKFZp686M05161 Tight junction protein ZO-1 yes no 2 1.2414E-12 113.67 2 0.85917 1.1097 NaN 1 Median 0.85917 1.1097 NaN 1 0 Median NaN NaN NaN 0 0 Median 1727500 1062200 665360 1727500 1062200 665360 0 0 0 6649 371 6795 24343;24344 36815;36816 36816 2 LAGIINFQRPK SNLVVNKTIFAKVDRLAGIINFQRPKDPNN KVDRLAGIINFQRPKDPNNLLNDWSQKLNS R L A P K D 1 1 1 0 0 1 0 1 0 2 1 1 0 1 1 0 0 0 0 0 0 0 11 1 1255.7401 A0A0S2Z489;O00232 A0A0S2Z489 409 419 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 3 0.0018347 89.029 2 0.32109 0.42444 1.6672 2 Median 0.32109 0.42444 1.6672 2 0 Median NaN NaN NaN 0 0 Median 18893000 13130000 5762900 18893000 13130000 5762900 0 0 0 6650 461 6796 24345;24346 36817;36818 36817 2 LAGLDITDATLR GQDNRSKLRNMTDFRLAGLDITDATLRLII DFRLAGLDITDATLRLIIRHMPLLSRLDLS R L A L R L 2 1 0 2 0 0 0 1 0 1 3 0 0 0 0 0 2 0 0 0 0 0 12 0 1257.6929 I3VM54;I3VM53;Q9Y2K7 I3VM54 1029 1040 KDM2A Lysine-specific demethylase 2A yes no 2 0.0004998 85.958 4 2 0.53762 0.73286 28.519 6 Median 0.55125 0.76023 18.693 4 0 Median 0.32755 0.50864 0.48537 2 0 Median 70301000 48108000 22193000 24080000 14881000 9199100 46221000 33227000 12994000 6651 1128 6797 24347;24348;24349;24350;24351;24352 36819;36820;36821;36822;36823;36824;36825;36826;36827;36828 36822 10 LAGLEYVLHFTALNGK LLIDFFRGPTVSNIRLAGLEYVLHFTALNG AGLEYVLHFTALNGKIYFRSYKLLLKKSGC R L A G K I 2 0 1 0 0 0 1 2 1 0 4 1 0 1 0 0 1 0 1 1 0 0 16 0 1744.9512 A8K800;Q9H7B2;Q5VXN0;B4DWS5 A8K800 177 192 RPF2 Ribosome production factor 2 homolog yes no 2;3 2.8169E-19 163.71 6 0.75429 0.93923 9.2655 6 Median 0.75429 0.93923 9.2655 6 0 Median NaN NaN NaN 0 0 Median 157260000 87847000 69417000 157260000 87847000 69417000 0 0 0 6652 637 6798 24353;24354;24355;24356;24357;24358 36829;36830;36831;36832;36833;36834;36835;36836;36837;36838;36839;36840 36837 12 LAGSLLTQALESHAEGFR ESGSAQAGGNQALPRLAGSLLTQALESHAE SLLTQALESHAEGFRERFEKTFQLKEKGLS R L A F R E 3 1 0 0 0 1 2 2 1 0 4 0 0 1 0 2 1 0 0 0 0 0 18 0 1898.985 A8K9K4;Q58F09;Q13724;C9J8D4 A8K9K4 77 94 GCS1;MOGS Mannosyl-oligosaccharide glucosidase yes no 3 0.00011325 46.663 1 2 1.089 1.5521 22.488 3 Plateau 0.82857 1.1396 NaN 1 0 Median 1.089 1.5521 19.368 2 0 Median 27980000 13191000 14788000 4450400 2348400 2102000 23529000 10843000 12686000 6653 646 6799 24359;24360;24361 36841;36842;36843;36844;36845;36846 36846 6 LAGVTLGQR EQPIFLTPCMRDLIKLAGVTLGQRRAQARR MRDLIKLAGVTLGQRRAQARRQTIRHSTRE K L A Q R R 1 1 0 0 0 1 0 2 0 0 2 0 0 0 0 0 1 0 0 1 0 0 9 0 913.53451 A0A024R7E3;P26358;Q59FP7;I6L9H2 A0A024R7E3 649 657 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 no no 2 0.0071013 69.825 1 1 0.43232 0.57573 NaN 1 Median 0.43232 0.57573 NaN 1 0 Median NaN NaN NaN 0 0 Median 22826000 13779000 9046400 20014000 13779000 6234600 2811800 0 2811800 6654 176;1129 6800 24362;24363 36847;36848 36848 2 LAHEVGWK VVRLKPTRKFAYLGRLAHEVGWKYQAVTAT KFAYLGRLAHEVGWKYQAVTATLEEKRKEK R L A W K Y 1 0 0 0 0 0 1 1 1 0 1 1 0 0 0 0 0 1 0 1 0 0 8 0 938.4974 Q53H34;P40429;Q5QTS3;M0QYS1;Q8J015;Q0VGL3;Q9BSQ6 Q53H34 141 148 RPL13A;RPL13a 60S ribosomal protein L13a no no 2 7.7442E-05 98.997 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13259000 8137400 5121500 0 0 0 13259000 8137400 5121500 6655 1332;1712 6801 24364;24365 36849;36850 36849 2 LAHGLLEELK QQTVRKLLSSLGGFKLAHGLLEELKTVLSS LGGFKLAHGLLEELKTVLSSHKVLPLEALV K L A L K T 1 0 0 0 0 0 2 1 1 0 4 1 0 0 0 0 0 0 0 0 0 0 10 0 1121.6445 E1NZA1;Q92616;A0A024RBS1;B4DM32 E1NZA1 600 609 PRIC295;GCN1L1 Translational activator GCN1 yes no 3 0.042638 38.75 1 0.62473 0.8333 NaN 1 Median 0.62473 0.8333 NaN 1 0 Median NaN NaN NaN 0 0 Median 2738000 1374900 1363100 2738000 1374900 1363100 0 0 0 6656 1000 6802 24366 36851 36851 1 LAHISTDPR GVLDQREYLTTLGQRLAHISTDPRLAKAIV TTLGQRLAHISTDPRLAKAIVLAAIFRCLH R L A P R L 1 1 0 1 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 9 0 1008.5352 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 846 854 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 3 0.039088 26.384 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4028500 4028500 0 4028500 4028500 0 0 0 0 6657 93 6803 24367 36852 36852 1 LAHYNK FVNDIFERIAGEASRLAHYNKRSTITSREI ERIAGEASRLAHYNKRSTITSREIQTAVRL R L A N K R 1 0 1 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 1 0 0 0 6 0 744.39187 B2R4S9;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;B4DR52;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;O60814;Q0D2M2;A8K9J7;A0A024RCJ2;Q16778;P33778;P23527;P06899;Q8N257 B2R4S9 81 86 HIST1H2BI;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B no no 2 0.043539 106.05 1 0.72468 0.92394 NaN 1 Median 0.72468 0.92394 NaN 1 0 Median NaN NaN NaN 0 0 Median 29699000 17381000 12317000 29699000 17381000 12317000 0 0 0 6658 25;295 6804 24368 36853 36853 1 LAHYNKR FVNDIFERIAGEASRLAHYNKRSTITSREI RIAGEASRLAHYNKRSTITSREIQTAVRLL R L A K R S 1 1 1 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 1 0 0 0 7 1 900.49298 B2R4S9;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;B4DR52;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;O60814;Q0D2M2;A8K9J7;A0A024RCJ2;Q16778;P33778;P23527;P06899;Q8N257 B2R4S9 81 87 HIST1H2BI;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B no no 2;3 0.0099618 120.06 1 1 0.44079 0.62022 35.167 2 Median 0.3605 0.48367 NaN 1 0 Median 0.53897 0.79532 NaN 1 0 Median 7335400 4741900 2593500 3370000 2129000 1241000 3965400 2612900 1352500 6659 25;295 6805 24369;24370 36854;36855 36854 2 LAIALGDAVNHPTPMAAAANEVYK FKPDFYLKYIQKDLRLAIALGDAVNHPTPM NHPTPMAAAANEVYKRAKALDQSDNDMSAV R L A Y K R 7 0 2 1 0 0 1 1 1 1 2 1 1 0 2 0 1 0 1 2 0 0 24 0 2436.2471 K7EMM8;D3DUE6;Q49A26;D3DUE7 Q49A26 480 503 GLYR1;N-PAC Putative oxidoreductase GLYR1 no no 3 1.2057E-06 63.726 5 2 0.80829 1.1404 41.844 6 Median 0.75145 0.95319 52.279 4 0 Median 0.82253 1.259 0.055603 2 0 Median 63840000 33813000 30027000 17759000 7988300 9770400 46081000 25825000 20256000 6660 982;1533 6806;6807 24371;24372;24373;24374;24375;24376;24377 36856;36857;36858;36859;36860;36861;36862;36863;36864 36863 360 9 LALAGIGQPVK QEVVEMRKKNEEFKKLALAGIGQPVKKSVS EFKKLALAGIGQPVKKSVSQVTKSVDFHFR K L A V K K 2 0 0 0 0 1 0 2 0 1 2 1 0 0 1 0 0 0 0 1 0 0 11 0 1065.6546 Q643R0;Q9ULW0;B3KM90 Q643R0 238 248 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 2.0552E-05 106.36 5 2 0.63396 0.93244 9.6603 6 Median 0.70733 0.8805 11.499 4 0 Median 0.59955 0.94328 1.7996 2 0 Median 174920000 103290000 71631000 109720000 62027000 47690000 65204000 41263000 23941000 6661 1581 6808 24378;24379;24380;24381;24382;24383;24384 36865;36866;36867;36868;36869;36870;36871;36872;36873;36874;36875 36870 10 LALAGIGQPVKK QEVVEMRKKNEEFKKLALAGIGQPVKKSVS FKKLALAGIGQPVKKSVSQVTKSVDFHFRT K L A K K S 2 0 0 0 0 1 0 2 0 1 2 2 0 0 1 0 0 0 0 1 0 0 12 1 1193.7496 Q643R0;Q9ULW0;B3KM90 Q643R0 238 249 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2;3 0.0041486 80.165 4 3 0.85076 1.0452 9.0644 7 Median 0.90207 1.1165 7.5955 4 0 Median 0.6189 0.98368 4.7755 3 0 Median 71782000 40835000 30947000 44893000 25762000 19131000 26890000 15073000 11816000 6662 1581 6809 24385;24386;24387;24388;24389;24390;24391 36876;36877;36878;36879;36880;36881;36882 36878 7 LALDIEIATYRK MARQLREYQELMNVKLALDIEIATYRKLLE NVKLALDIEIATYRKLLEGEESRLESGMQN K L A R K L 2 1 0 1 0 0 1 0 0 2 2 1 0 0 0 0 1 0 1 0 0 0 12 1 1404.7977 CON__P05787;P05787;Q969I0;Q7L4M3;CON__H-INV:HIT000292931;A1L194;K7EJU1;B4E192;B4DJW0;CON__Q6KB66-1;P14136;Q6KB66;CON__P08729;Q96GE1;Q6PIN2;CON__Q3KNV1;P08729;B3KY79 CON__P05787 382 393 KRT8;GFAP;KRT80;KRT4;KRT7 Keratin, type II cytoskeletal 8;Glial fibrillary acidic protein;Keratin, type II cytoskeletal 80;Keratin, type II cytoskeletal 7 no no 2;3 0.00057752 92.943 5 0.23161 0.3134 39.723 5 Median 0.23161 0.3134 39.723 5 0 Median NaN NaN NaN 0 0 Median 206000000 164150000 41845000 206000000 164150000 41845000 0 0 0 + 6663 955;968;957 6810 24392;24393;24394;24395;24396 36883;36884;36885;36886;36887 36886 5 LALDLEIATYR LARLLRDYQELMNTKLALDLEIATYRTLLE MNTKLALDLEIATYRTLLEGEESRMSGECA K L A Y R T 2 1 0 1 0 0 1 0 0 1 3 0 0 0 0 0 1 0 1 0 0 0 11 0 1276.7027 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 473 483 KRT1 Keratin, type II cytoskeletal 1 no no 2 3.8667E-10 148.94 7 3 0.66639 1.003 123.74 3 Plateau 0.23966 0.32689 15.132 2 0 Median 1.6693 2.765 NaN 1 0 Median 1093400000 965460000 127970000 597200000 534430000 62764000 496240000 431030000 65211000 + 6664 1113;1114 6811 24397;24398;24399;24400;24401;24402;24403;24404;24405;24406 36888;36889;36890;36891;36892;36893;36894;36895;36896;36897 36891 10 LALDMEIHAYR MQQQLDEYQELLDIKLALDMEIHAYRKLLE LDIKLALDMEIHAYRKLLEGEEERLRLSPS K L A Y R K 2 1 0 1 0 0 1 0 1 1 2 0 1 0 0 0 0 0 1 0 0 0 11 0 1330.6704 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;Q5TCI8;B4DFR3 P02545 367 377 LMNA Prelamin-A/C;Lamin-A/C yes no 3 0.00072291 73.841 4 3 0.86028 1.201 61.154 6 Median 0.53757 0.75123 19.548 3 0 Median 1.3994 2.0451 4.7709 3 0 Median 55116000 28342000 26774000 18376000 13020000 5355300 36740000 15322000 21418000 6665 1229 6812;6813 24407;24408;24409;24410;24411;24412;24413 36898;36899;36900;36901;36902;36903;36904;36905 36905 469 7 LALDMEIHAYRK MQQQLDEYQELLDIKLALDMEIHAYRKLLE DIKLALDMEIHAYRKLLEGEEERLRLSPSP K L A R K L 2 1 0 1 0 0 1 0 1 1 2 1 1 0 0 0 0 0 1 0 0 0 12 1 1458.7653 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;Q5TCI8;B4DFR3 P02545 367 378 LMNA Prelamin-A/C;Lamin-A/C yes no 3 0.00090351 67.153 3 1 0.95451 1.3603 68.351 2 Median 0.62534 0.83894 NaN 1 0 Median 1.4569 2.2056 NaN 1 0 Median 19942000 13526000 6415300 11208000 9537100 1671300 8733200 3989100 4744100 6666 1229 6814;6815 24414;24415;24416;24417 36906;36907;36908;36909 36909 469 4 LALDMEISAYR MQQQLNDYEQLLDVKLALDMEISAYRKLLE LDVKLALDMEISAYRKLLEGEEERLKLSPS K L A Y R K 2 1 0 1 0 0 1 0 0 1 2 0 1 0 0 1 0 0 1 0 0 0 11 0 1280.6435 P20700;E9PBF6;B4DZT3 P20700 368 378 LMNB1 Lamin-B1 yes no 2 0.040548 51.268 1 1.0262 1.396 NaN 1 Median 1.0262 1.396 NaN 1 0 Median NaN NaN NaN 0 0 Median 3146700 1550500 1596200 3146700 1550500 1596200 0 0 0 6667 1285 6816 24418 36910 36910 0 LALDVEIATYR LARLLKEYQELMNVKLALDVEIATYRKLLE MNVKLALDVEIATYRKLLEGEECRLYGEGV K L A Y R K 2 1 0 1 0 0 1 0 0 1 2 0 0 0 0 0 1 0 1 1 0 0 11 0 1262.6871 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;B4DRY0;CON__P07744;CON__REFSEQ:XP_932229;CON__P04259;B4DKV4;CON__P13647;P13647;B4E1T1;B4DL32;H0YI76;CON__O95678;O95678;CON__P35908;P35908;Q01546;CON__Q01546;CON__Q5XKE5;Q5XKE5 B4DRR0 427 437 KRT6A;KRT6C;KRT5;KRT75;KRT2;KRT76;KRT79 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 79 no no 2 0.0017202 94.409 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 101730000 101730000 0 34766000 34766000 0 66967000 66967000 0 + 6668 459;953;964;961;946;972 6817 24419;24420;24421;24422 36911;36912;36913;36914;36915;36916;36917;36918 36912 8 LALDVEIATYRK LARLLKEYQELMNVKLALDVEIATYRKLLE NVKLALDVEIATYRKLLEGEECRLYGEGVG K L A R K L 2 1 0 1 0 0 1 0 0 1 2 1 0 0 0 0 1 0 1 1 0 0 12 1 1390.782 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;B4DRY0;CON__P07744;CON__P04259;B4DKV4;CON__P13647;P13647;B4E1T1;B4DL32;H0YI76;CON__O95678;O95678;CON__P35908;P35908;Q01546;CON__Q01546;CON__Q5XKE5;Q5XKE5 B4DRR0 427 438 KRT6A;KRT6C;KRT5;KRT75;KRT2;KRT76;KRT79 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 79 no no 3 0.034764 56.205 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40573000 40573000 0 19347000 19347000 0 21226000 21226000 0 + 6669 459;953;964;961;946;972 6818 24423;24424;24425 36919;36920;36921 36920 3 LALEDGCGPGPGPPR EADSVSFLQELLALRLALEDGCGPGPGPPR LALEDGCGPGPGPPRELSFTKSSQAVRAVR R L A P R E 1 1 0 1 1 0 1 4 0 0 2 0 0 0 4 0 0 0 0 0 0 0 15 0 1491.714 Q96LD4 Q96LD4 341 355 TRIM47 Tripartite motif-containing protein 47 yes yes 2 3.0733E-06 82.417 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6670 1693 6819 24426 36922 36922 1 LALFPLLPK VLGLNEDPLKWWSDRLALFPLLPKVLQKYW KWWSDRLALFPLLPKVLQKYWCVTATRVAP R L A P K V 1 0 0 0 0 0 0 0 0 0 4 1 0 1 2 0 0 0 0 0 0 0 9 0 1010.6528 A0A024RBU4;O96006 A0A024RBU4 595 603 hCG_1981838;ZBED1 Zinc finger BED domain-containing protein 1 yes no 2 0.0068851 68.422 1 2 0.53677 0.74932 42.253 3 Median 0.32596 0.40101 NaN 1 0 Median 0.5718 0.81981 12.715 2 0 Median 28713000 20395000 8317400 18361000 13545000 4816500 10351000 6850400 3500900 6671 282 6820 24427;24428;24429 36923;36924;36925;36926;36927;36928 36928 6 LALFQAIGK ERATTGYPDPYGGEKLALFQAIGKEVVDRA PYGGEKLALFQAIGKEVVDRALGQSWLEVQ K L A G K E 2 0 0 0 0 1 0 1 0 1 2 1 0 1 0 0 0 0 0 0 0 0 9 0 959.5804 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 131 139 EPPK1 Epiplakin no no 2 0.021896 54.549 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3821300 0 3821300 0 0 0 3821300 0 3821300 6672 373;1386 6821 24430;24431 36929;36930 36929 2 LALGIPLPELR ASKATGYPLAYVAAKLALGIPLPELRNSVT VAAKLALGIPLPELRNSVTGGTAAFEPSVD K L A L R N 1 1 0 0 0 0 1 1 0 1 4 0 0 0 2 0 0 0 0 0 0 0 11 0 1190.7387 Q53SY7;F8VPD4;P27708 Q53SY7 635 645 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.00021912 115.71 4 0.33608 0.45414 11.796 4 Median 0.33608 0.45414 11.796 4 0 Median NaN NaN NaN 0 0 Median 28347000 20806000 7540900 28347000 20806000 7540900 0 0 0 6673 1060 6822 24432;24433;24434;24435 36931;36932;36933;36934;36935;36936;36937;36938 36935 8 LALGQINIAK YADLMNILYDKDHYKLALGQINIAKNLVDN KDHYKLALGQINIAKNLVDNVAKDYVRLMK K L A A K N 2 0 1 0 0 1 0 1 0 2 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1039.639 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;O60747;Q5T3R7 Q53GS0 94 103 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 9.9355E-08 126.04 4 2 0.76655 1.0367 1.8662 6 Linear 0.7825 1.0116 1.32 4 0 Linear 0.62236 0.98534 1.6858 2 0 Median 692870000 393070000 299800000 501790000 276410000 225380000 191080000 116660000 74420000 6674 975 6823 24436;24437;24438;24439;24440;24441 36939;36940;36941;36942;36943;36944;36945;36946;36947;36948;36949;36950 36945 12 LALIAPK ISQAARKTGIHTSTRLALIAPKKELKEGDI TGIHTSTRLALIAPKKELKEGDIPEIEWWD R L A P K K 2 0 0 0 0 0 0 0 0 1 2 1 0 0 1 0 0 0 0 0 0 0 7 0 724.48471 B4DLS8;Q53GV6;B2R791;O43395;B4DM28 B4DLS8 356 362 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes no 2 0.051536 48.174 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1425400 1425400 0 0 0 0 1425400 1425400 0 6675 703 6824 24442 36951 36951 1 LALIGGLEGFLSK PTVVSFGTVTTPADRLALIGGLEGFLSKMA DRLALIGGLEGFLSKMAEHRQQPDIRTLTL R L A S K M 1 0 0 0 0 0 1 3 0 1 4 1 0 1 0 1 0 0 0 0 0 0 13 0 1316.7704 G3V325;B4DJ38;Q3SYP6;Q3ZB84;A4D273;O75127 G3V325 514 526 ATP5J2-PTCD1;PTCD1 Pentatricopeptide repeat-containing protein 1, mitochondrial yes no 2 0.0091204 80.834 2 0.75687 0.97335 NaN 1 Median 0.75687 0.97335 NaN 1 0 Median NaN NaN NaN 0 0 Median 5006900 3025600 1981400 5006900 3025600 1981400 0 0 0 6676 814 6825 24443;24444 36952;36953 36953 2 LALLEPVFPIACHR SRVAEETIKDYFEARLALLEPVFPIACHRL RLALLEPVFPIACHRLCEGPDFSTDFNYKP R L A H R L 2 1 0 0 1 0 1 0 1 1 3 0 0 1 2 0 0 0 0 1 0 0 14 0 1634.8967 Q99549;H0Y6J1 Q99549 742 755 MPHOSPH8 M-phase phosphoprotein 8 yes no 3 8.9563E-05 95.417 4 1 0.56828 0.76967 23.836 5 Median 0.57252 0.77426 9.8533 4 0 Median 0.35462 0.45634 NaN 1 0 Median 26521000 16924000 9597500 23366000 14916000 8450700 3154800 2008000 1146800 6677 1705 6826 24445;24446;24447;24448;24449 36954;36955;36956;36957;36958;36959;36960;36961;36962 36959 9 LALLHEGTGPR FVLSDEFSHLRPEQRLALLHEGTGPRVISA PEQRLALLHEGTGPRVISAFVEIIFDNSDN R L A P R V 1 1 0 0 0 0 1 2 1 0 3 0 0 0 1 0 1 0 0 0 0 0 11 0 1162.6459 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 62 72 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 3 0.000703 123.79 3 2 0.66593 0.90719 20.26 4 Median 0.54917 0.74508 8.3095 2 0 Median 0.76207 1.0477 0.83094 2 0 Median 43032000 28990000 14042000 31527000 22084000 9442800 11505000 6906200 4599000 6678 663 6827 24450;24451;24452;24453;24454 36963;36964;36965;36966;36967;36968 36964 6 LALLLSQFVGSQSVR ISEACSLAQQSGDHRLALLLSQFVGSQSVR LALLLSQFVGSQSVRELLTMQLVDWHQLQA R L A V R E 1 1 0 0 0 2 0 1 0 0 4 0 0 1 0 3 0 0 0 2 0 0 15 0 1616.925 P52948;H7C3P6 P52948 1358 1372 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.001464 56.094 1 0.39338 0.52467 NaN 1 Median 0.39338 0.52467 NaN 1 0 Median NaN NaN NaN 0 0 Median 3021300 1869900 1151400 3021300 1869900 1151400 0 0 0 6679 1367 6828 24455 36969 36969 1 LALLNEK EKDAQIAMMQQRIDRLALLNEKQAASPLEP MMQQRIDRLALLNEKQAASPLEPKELEELR R L A E K Q 1 0 1 0 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 799.48035 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 261 267 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.040446 54.774 2 0.33664 0.52471 6.7187 2 Median NaN NaN NaN 0 0 Median 0.33664 0.52471 6.7187 2 0 Median 55463000 41625000 13838000 0 0 0 55463000 41625000 13838000 6680 148;1499;590 6829 24456;24457 36970;36971 36970 2 LALLQHLR ______________________________ WDQRLVRLALLQHLRAFYGIKVKGVRGQCD R L A L R A 1 1 0 0 0 1 0 0 1 0 4 0 0 0 0 0 0 0 0 0 0 0 8 0 962.60253 H3BR51;Q3KRB8;Q6P4F7 H3BR51 9 16 ARHGAP11A;ARHGAP11B Rho GTPase-activating protein 11B;Rho GTPase-activating protein 11A yes no 3 0.024935 32.61 1 1.0477 1.3971 NaN 1 Median 1.0477 1.3971 NaN 1 0 Median NaN NaN NaN 0 0 Median 3009300 1475200 1534100 3009300 1475200 1534100 0 0 0 6681 1107 6830 24458 36972 36972 1 LALPGGGGDGAAVAEIGALGR AAAFSDVLNFIYSARLALPGGGGDGAAVAE GGDGAAVAEIGALGRRLGISRLQGLGEGGD R L A G R R 5 1 0 1 0 0 1 7 0 1 3 0 0 0 1 0 0 0 0 1 0 0 21 0 1820.9745 Q9P1Z0 Q9P1Z0 148 168 ZBTB4 Zinc finger and BTB domain-containing protein 4 yes yes 2 9.933E-06 95.854 3 0.72723 1.0036 27.208 3 Plateau 0.72723 1.0036 27.208 3 0 Plateau NaN NaN NaN 0 0 Median 11181000 7072700 4108400 11181000 7072700 4108400 0 0 0 6682 1778 6831 24459;24460;24461 36973;36974;36975 36973 3 LALPGHAESYNPPPEYLLSEEER NAVLGRHKMHVPAPKLALPGHAESYNPPPE SYNPPPEYLLSEEERLAWEQQEPGERKLSF K L A E R L 2 1 1 0 0 0 5 1 1 0 4 0 0 0 4 2 0 0 2 0 0 0 23 0 2610.2602 B2RDN4;Q14137;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 B2RDN4 305 327 BOP1 Ribosome biogenesis protein BOP1 yes no 3 1.0074E-13 116.27 4 2 0.83974 1.1501 7.3236 6 Median 0.84153 1.1613 6.8531 4 0 Median 0.66707 1.0878 2.8711 2 0 Median 436120000 240980000 195140000 274490000 144840000 129650000 161630000 96140000 65491000 6683 738 6832 24462;24463;24464;24465;24466;24467 36976;36977;36978;36979;36980;36981;36982;36983;36984;36985;36986;36987;36988;36989;36990;36991 36980 16 LALPQSDASLLSR ______________________________ QRLALPQSDASLLSRDEVASLLFDPKEAAT R L A S R D 2 1 0 1 0 1 0 0 0 0 4 0 0 0 1 3 0 0 0 0 0 0 13 0 1369.7565 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;Q6P664 B2RWN5 11 23 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 1.5351E-06 117.52 4 2 0.76922 1.1262 9.6055 6 Median 0.83454 1.1249 12.181 4 0 Median 0.69468 1.1332 3.3686 2 0 Median 298490000 171800000 126690000 130900000 70155000 60740000 167600000 101650000 65947000 6684 748 6833 24468;24469;24470;24471;24472;24473 36992;36993;36994;36995;36996;36997;36998;36999;37000;37001 36997 10 LALPQSDASLLSRDEVASLLFDPK ______________________________ LLSRDEVASLLFDPKEAATIDRDTAFAIGC R L A P K E 3 1 0 3 0 1 1 0 0 0 6 1 0 1 2 4 0 0 0 1 0 0 24 1 2584.3748 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;Q6P664 B2RWN5 11 34 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 2.1608E-28 101.6 4 0.93794 1.241 10.11 4 Median 0.93794 1.241 10.11 4 0 Median NaN NaN NaN 0 0 Median 69550000 37226000 32323000 69550000 37226000 32323000 0 0 0 6685 748 6834 24474;24475;24476;24477 37002;37003;37004;37005;37006;37007;37008;37009 37007 8 LALQALTEK KQEQQAFKEAADTERLALQALTEKLLRSEE AADTERLALQALTEKLLRSEESVSRLPEEI R L A E K L 2 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 9 0 985.5808 B3KVX6;Q8TB01;Q6NWZ1;A0A024RBH2;Q07065 B3KVX6 266 274 CKAP4 Cytoskeleton-associated protein 4 yes no 2 0.026399 51.346 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4815400 0 4815400 0 0 0 4815400 0 4815400 6686 272 6835 24478;24479 37010;37011 37010 2 LALSPNAQVLALASGSSIHLYNTR KTGRFEEAAGAAPCRLALSPNAQVLALASG LALASGSSIHLYNTRRGEKEECFERVHGEC R L A T R R 4 1 2 0 0 1 0 1 1 1 5 0 0 0 1 4 1 0 1 1 0 0 24 0 2495.3496 B4DY59;E9PF19;A0A0S2Z5F3;Q8N2L6;B2RB52;Q9Y4P3;Q96E41 B4DY59 208 231 TBL2 Transducin beta-like protein 2 yes no 3 9.6474E-15 81.312 2 2 0.89853 1.2763 36.473 4 Median 0.66366 0.88274 22.607 2 0 Median 1.0429 1.5919 1.7218 2 0 Median 79285000 39681000 39604000 42669000 23925000 18744000 36616000 15756000 20860000 6687 480 6836 24480;24481;24482;24483 37012;37013;37014;37015;37016 37013 4 LALSQNQQSSGAAGPTGK LLAEVERRIRRGHARLALSQNQQSSGAAGP SQNQQSSGAAGPTGKNEEKIQVLTDKIDVL R L A G K N 3 0 1 0 0 3 0 3 0 0 2 1 0 0 1 3 1 0 0 0 0 0 18 0 1713.8646 Q6PKC2;Q86Y74;B4DJ96;A8K3C5;J3KPP4;O95232;D6RDI2 Q6PKC2 107 124 CROP;LUC7L3 Luc7-like protein 3 yes no 2 7.3141E-09 73.386 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6106600 0 6106600 0 0 0 6106600 0 6106600 6688 594 6837 24484;24485 37017;37018 37017 2 LALSVGTDK HKGQVTFLSIHPSGKLALSVGTDKTLRTWN IHPSGKLALSVGTDKTLRTWNLVEGRSAFI K L A D K T 1 0 0 1 0 0 0 1 0 0 2 1 0 0 0 1 1 0 0 1 0 0 9 0 902.5073 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 137 145 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 2 0.00060667 118.74 2 1.1086 1.3851 4.5895 2 Median 1.1086 1.3851 4.5895 2 0 Median NaN NaN NaN 0 0 Median 65585000 30795000 34790000 65585000 30795000 34790000 0 0 0 6689 478 6838 24486;24487 37019;37020 37019 2 LALVISELEGK GREKFKSRGVGELARLALVISELEGKAQQP ELARLALVISELEGKAQQPAAELMQDTRDF R L A G K A 1 0 0 0 0 0 2 1 0 1 3 1 0 0 0 1 0 0 0 1 0 0 11 0 1170.686 A0A024RCP3;Q12899;A2AE48 A0A024RCP3 235 245 TRIM26 Tripartite motif-containing protein 26 yes no 2 8.0746E-06 106.88 4 0.59787 0.76307 9.6672 3 Median 0.59787 0.76307 9.6672 3 0 Median NaN NaN NaN 0 0 Median 33098000 19578000 13519000 33098000 19578000 13519000 0 0 0 6690 299 6839 24488;24489;24490;24491 37021;37022;37023;37024 37023 4 LALVTGGEIASTFDHPELVK GVMAIEHADFAGVERLALVTGGEIASTFDH GGEIASTFDHPELVKLGSCKLIEEVMIGED R L A V K L 2 0 0 1 0 0 2 2 1 1 3 1 0 1 1 1 2 0 0 2 0 0 20 0 2096.1154 V9HW96;P78371;F5GWF6;F8VQ14;B7Z4R3 V9HW96 323 342 HEL-S-100n;CCT2 T-complex protein 1 subunit beta yes no 3 4.3981E-05 58.01 2 1 0.37963 0.47904 3.6547 2 Median 0.37963 0.47904 3.6547 2 0 Median NaN NaN NaN 0 0 Median 52403000 36845000 15558000 49119000 36845000 12274000 3284400 0 3284400 6691 1426 6840 24492;24493;24494 37025;37026;37027;37028 37026 4 LAMQLEEQASR AKHFSALRDVIKALRLAMQLEEQASRQISS KALRLAMQLEEQASRQISSKKRPQ______ R L A S R Q 2 1 0 0 0 2 2 0 0 0 2 0 1 0 0 1 0 0 0 0 0 0 11 0 1274.6289 A8K3S3;A0A140VKF1;Q99661;B7Z7M6;B7Z6Q6;Q8N5N1 A8K3S3 706 716 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 2 6.6291E-12 136.63 1 1 0.956 1.3426 25.861 2 Median 1.1722 1.612 NaN 1 0 Median 0.77969 1.1182 NaN 1 0 Median 17472000 9271400 8200200 4418900 1980700 2438200 13053000 7290600 5762000 6692 514 6841;6842 24495;24496 37029;37030;37031 37031 180 3 LANILFTQELAR GEKFYNAGLAYCHSKLANILFTQELARRLK HSKLANILFTQELARRLKGSGVTTYSVHPG K L A A R R 2 1 1 0 0 1 1 0 0 1 3 0 0 1 0 0 1 0 0 0 0 0 12 0 1387.7823 A0A0S2Z583;Q8TC12;G3V2G6;A0A0S2Z575;H0YIZ8;G3V234;B3KQ19;H0YJ10;H0YJ46 A0A0S2Z583 207 218 RDH11 Retinol dehydrogenase 11 yes no 2 0.0013071 74.162 2 0.72434 1.0075 NaN 1 Median 0.72434 1.0075 NaN 1 0 Median NaN NaN NaN 0 0 Median 6605200 1505900 5099300 6605200 1505900 5099300 0 0 0 6693 476 6843 24497;24498 37032;37033 37033 2 LANRAPEPTPQQVAQQQ VAVRLQMSERNILSRLANRAPEPTPQQVAQ NRAPEPTPQQVAQQQ_______________ R L A Q Q - 3 1 1 0 0 5 1 0 0 0 1 0 0 0 3 0 1 0 0 1 0 0 17 1 1874.9599 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 1870 1886 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 4.9877E-25 175.48 4 2 0.91369 1.264 18.687 6 Median 0.86442 1.2037 13.566 4 0 Median 1.09 1.5671 2.1761 2 0 Median 53214000 26743000 26471000 26883000 14269000 12614000 26331000 12475000 13856000 6694 428 6844 24499;24500;24501;24502;24503;24504 37034;37035;37036;37037;37038;37039;37040;37041;37042;37043;37044;37045 37036 12 LAPAHVDEQVFLYENAR LFGSAANVVSAKRNRLAPAHVDEQVFLYEN PAHVDEQVFLYENARSGAEAEPEDQDEGEW R L A A R S 3 1 1 1 0 1 2 0 1 0 2 0 0 1 1 0 0 0 1 2 0 0 17 0 1970.985 A0A024RBU4;O96006 A0A024RBU4 636 652 hCG_1981838;ZBED1 Zinc finger BED domain-containing protein 1 yes no 3 2.6343E-05 72.932 3 1 0.33219 0.47648 12.888 2 Median 0.31499 0.43498 NaN 1 0 Median 0.35033 0.52195 NaN 1 0 Median 24602000 19342000 5259600 17061000 13900000 3160600 7541200 5442200 2099000 6695 282 6845 24505;24506;24507;24508 37046;37047;37048;37049;37050 37047 5 LAPAPPATPAPAGTPGPILIPK RRYGLPYVVRVDLRRLAPAPPATPAPAGTP TPAPAGTPGPILIPKQALAFAPFSPPKRLR R L A P K Q 5 0 0 0 0 0 0 2 0 2 2 1 0 0 8 0 2 0 0 0 0 0 22 0 2046.1877 A0A0D9SF94;Q86Y97 A0A0D9SF94 294 315 SUV420H2 Histone-lysine N-methyltransferase SUV420H2 yes no 2 0.00099555 38.366 1 0.80969 1.0369 NaN 1 Median 0.80969 1.0369 NaN 1 0 Median NaN NaN NaN 0 0 Median 3169300 1805400 1364000 3169300 1805400 1364000 0 0 0 6696 434 6846 24509 37051 37051 1 LAPDYDALDVANK NTLIRPDGEKKAYVRLAPDYDALDVANKIG VRLAPDYDALDVANKIGII___________ R L A N K I 3 0 1 3 0 0 0 0 0 0 2 1 0 0 1 0 0 0 1 1 0 0 13 0 1403.6933 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7;B9EJE3 H7BY10 142 154 RPL23A;RPL23AL 60S ribosomal protein L23a yes no 2 1.6182E-10 148.56 12 4 0.97627 1.237 27.386 9 Median 0.998 1.3172 10.099 5 0 Median 0.51508 0.79062 14.067 4 0 Median 15005000000 7498700000 7506700000 12057000000 5512000000 6545300000 2948100000 1986700000 961360000 6697 658 6847 24510;24511;24512;24513;24514;24515;24516;24517;24518;24519;24520;24521;24522;24523;24524;24525 37052;37053;37054;37055;37056;37057;37058;37059;37060;37061;37062;37063;37064;37065;37066;37067;37068;37069;37070;37071;37072;37073;37074;37075;37076;37077;37078;37079;37080;37081;37082;37083;37084;37085;37086;37087;37088 37079 37 LAPITSDPTEATAVGAVEASFK EAAIYHLQLFEELRRLAPITSDPTEATAVG PTEATAVGAVEASFKCCSGAIIVLTKSGRS R L A F K C 5 0 0 1 0 0 2 1 0 1 1 1 0 1 2 2 3 0 0 2 0 0 22 0 2174.1107 V9HWB8;P14618;B4DNK4;Q8WUW7;Q9UKK4;Q9UK31 V9HWB8 401 422 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 2 2.0461E-59 202.32 4 1 0.83549 1.0276 86.351 5 Median 0.8306 1.0178 2.6209 4 0 Median 4.5141 7.0765 NaN 1 0 Median 125010000 53267000 71744000 88288000 46754000 41534000 36723000 6512600 30210000 6698 1267 6848 24526;24527;24528;24529;24530 37089;37090;37091;37092;37093;37094;37095;37096;37097;37098 37092 10 LAPLTR QSPRSPKHTRPAELRLAPLTRVLTPPHDVD KHTRPAELRLAPLTRVLTPPHDVDSLPHLR R L A T R V 1 1 0 0 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 0 0 0 6 0 669.41736 D6W648;Q9P1Y5 D6W648 802 807 hCG_2004001;CAMSAP3 Calmodulin-regulated spectrin-associated protein 3 yes no 2 0.03421 114.6 2 0.67267 0.92322 10.141 2 Median 0.67267 0.92322 10.141 2 0 Median NaN NaN NaN 0 0 Median 136670000 71888000 64777000 136670000 71888000 64777000 0 0 0 6699 998 6849 24531;24532 37099;37100 37099 2 LAPQVHNTTSR SEGSAHNVAYPGIPKLAPQVHNTTSRELNV GIPKLAPQVHNTTSRELNVSKIGSFAEPSS K L A S R E 1 1 1 0 0 1 0 0 1 0 1 0 0 0 1 1 2 0 0 1 0 0 11 0 1222.6418 Q03164 Q03164 2331 2341 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 3 0.0018365 52.903 1 1.0132 1.3648 NaN 1 Median 1.0132 1.3648 NaN 1 0 Median NaN NaN NaN 0 0 Median 5702900 2750800 2952100 5702900 2750800 2952100 0 0 0 6700 1438 6850 24533 37101;37102 37102 2 LAQAEAAGLHK TDTTVNSVVKMTEEKLAQAEAAGLHKVFKL TEEKLAQAEAAGLHKVFKLQTTLTCNSMVL K L A H K V 4 0 0 0 0 1 1 1 1 0 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1107.6037 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80;Q6W6M6 Q71UH4 970 980 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2;3 7.9137E-06 130.75 5 2 0.61067 0.86585 26.672 6 Median 0.66869 0.85014 33.599 4 0 Median 0.57799 0.86585 3.9181 2 0 Median 107890000 46543000 61343000 86188000 33064000 53124000 21699000 13480000 8219200 6701 1437 6851 24534;24535;24536;24537;24538;24539;24540 37103;37104;37105;37106;37107;37108;37109;37110 37106 8 LAQALHEMR LVEVDSGRQIEYEYKLAQALHEMREQHDAQ IEYEYKLAQALHEMREQHDAQVRLYKEELE K L A M R E 2 1 0 0 0 1 1 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 9 0 1067.5546 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;B4DZT3 P20700 242 250 LMNB1 Lamin-B1 yes no 2 0.0042484 67.113 1 1.5308 1.9682 NaN 1 Median NaN NaN NaN 0 0 Median 1.5308 1.9682 NaN 1 0 Median 3717200 1270700 2446500 0 0 0 3717200 1270700 2446500 6702 1285 6852 24541 37111;37112 37112 536 2 LAQEGIYTLYPFINSR WCRNNSGEEFDCAFRLAQEGIYTLYPFINS AQEGIYTLYPFINSRIITVSMEDVKILLTQ R L A S R I 1 1 1 0 0 1 1 1 0 2 2 0 0 1 1 1 1 0 2 0 0 0 16 0 1883.9781 Q08J23 Q08J23 603 618 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 4.746E-13 140.33 4 1 0.26798 0.35765 106.4 5 Median 0.24168 0.3256 14.582 4 0 Median 2.3979 3.4179 NaN 1 0 Median 79629000 55643000 23986000 66917000 52621000 14297000 12712000 3022500 9689400 6703 1451 6853 24542;24543;24544;24545;24546 37113;37114;37115;37116;37117;37118;37119;37120;37121;37122 37113 10 LAQEPLGLEVDQFLEDVR RRRRGPRNKKRGWRRLAQEPLGLEVDQFLE EPLGLEVDQFLEDVRLQERTSGGLLSEAPN R L A V R L 1 1 0 2 0 2 3 1 0 0 4 0 0 1 1 0 0 0 0 2 0 0 18 0 2070.0633 Q7L4X7;Q96CS0;Q53YP0;B4E1N4;Q9NZM5;B4DVK1;B4DND9;B4E013 Q7L4X7 47 64 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes no 2 0.00028142 97.797 3 0.5987 0.79909 NaN 1 Median 0.5987 0.79909 NaN 1 0 Median NaN NaN NaN 0 0 Median 31480000 14803000 16677000 31480000 14803000 16677000 0 0 0 6704 887 6854 24547;24548;24549 37123;37124;37125 37125 3 LAQFEPSQR PPEDPSVPVALNIGKLAQFEPSQRQNQVGV ALNIGKLAQFEPSQRQNQVGVVPWSPPQSN K L A Q R Q 1 1 0 0 0 2 1 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 9 0 1074.5458 Q08211;Q58F26;Q6PJK6 Q08211 315 323 DHX9 ATP-dependent RNA helicase A yes no 2 2.4887E-05 161.02 2 2 0.56835 0.84332 4.0796 4 Median 0.63837 0.87991 3.1332 2 0 Median 0.50808 0.82591 0.077352 2 0 Median 349500000 216460000 133050000 214130000 127810000 86320000 135370000 88646000 46726000 6705 1448 6855 24550;24551;24552;24553 37126;37127;37128;37129;37130;37131 37126 6 LAQFIGNR PELVKIINDNATYCRLAQFIGNRRELNEDK DNATYCRLAQFIGNRRELNEDKLEKLEELT R L A N R R 1 1 1 0 0 1 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 8 0 917.5083 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 213 220 NOP56 Nucleolar protein 56 yes no 2 0.0043435 97.071 3 2 0.58042 0.902 4.9862 5 Linear 0.65184 0.89506 7.0337 3 0 Plateau 0.53263 0.85372 0.70162 2 0 Median 227340000 145360000 81974000 140590000 87956000 52629000 86753000 57408000 29345000 6706 647 6856 24554;24555;24556;24557;24558 37132;37133;37134;37135;37136;37137;37138;37139;37140 37136 9 LAQFIGNRR PELVKIINDNATYCRLAQFIGNRRELNEDK NATYCRLAQFIGNRRELNEDKLEKLEELTM R L A R R E 1 2 1 0 0 1 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 9 1 1073.6094 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 213 221 NOP56 Nucleolar protein 56 yes no 2;3 0.00018406 129.4 3 3 0.6439 0.86649 16.203 5 Median 0.69507 0.94413 6.2114 3 0 Median 0.46162 0.72009 14.116 2 0 Median 240920000 156920000 84000000 134880000 78541000 56344000 106040000 78381000 27656000 6707 647 6857 24559;24560;24561;24562;24563;24564 37141;37142;37143;37144;37145;37146;37147;37148 37148 8 LAQGHTTVDELAR RLQEAGILSAEELQRLAQGHTTVDELARRE QRLAQGHTTVDELARREDVRHYLQGRSSIA R L A A R R 2 1 0 1 0 1 1 1 1 0 2 0 0 0 0 0 2 0 0 1 0 0 13 0 1409.7263 Q15149;D3DWL0 Q15149 2809 2821 PLEC;PLEC1 Plectin yes no 2;3 1.7449E-12 152.96 9 1 0.72136 0.98057 40.437 8 Median 0.71505 0.97152 18.831 7 0 Median 1.8729 2.6266 NaN 1 0 Median 163050000 88678000 74373000 156530000 86635000 69891000 6524700 2042500 4482100 6708 1507 6858 24565;24566;24567;24568;24569;24570;24571;24572;24573;24574 37149;37150;37151;37152;37153;37154;37155;37156;37157;37158;37159;37160;37161;37162;37163;37164 37159 16 LAQGLTHLGK AQYHAKDPNNLFMVRLAQGLTHLGKGTLTL LFMVRLAQGLTHLGKGTLTLCPYHSDRQLM R L A G K G 1 0 0 0 0 1 0 2 1 0 3 1 0 0 0 0 1 0 0 0 0 0 10 0 1036.6029 Q59EG8;Q13200;B4DM22;Q13041 Q59EG8 769 778 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 3 0.019887 50.292 2 0.36879 0.4624 10.912 2 Median 0.36879 0.4624 10.912 2 0 Median NaN NaN NaN 0 0 Median 33366000 22064000 11302000 33366000 22064000 11302000 0 0 0 6709 1465 6859 24575;24576 37165;37166 37166 2 LAQICSSIR LDPEALGNIKKLSNRLAQICSSIRTHK___ KKLSNRLAQICSSIRTHK____________ R L A I R T 1 1 0 0 1 1 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 0 9 0 1046.5543 A8K7A2;Q53HL2 A8K7A2 269 277 CDCA8 Borealin yes no 2 0.00099971 113.26 4 2 0.84924 1.1835 18.939 6 Median 1.0146 1.4038 18.738 4 0 Median 0.65686 1.0448 0.92492 2 0 Median 344950000 181610000 163340000 269120000 135960000 133150000 75831000 45647000 30184000 6710 632 6860 24577;24578;24579;24580;24581;24582 37167;37168;37169;37170;37171;37172;37173;37174;37175;37176;37177 37170 11 LAQLAGDHECGSSSQR EKTLMMNTLYKLHDRLAQLAGDHECGSSSQ AQLAGDHECGSSSQRTLSVQEAAAYLKDLG R L A Q R T 2 1 0 1 1 2 1 2 1 0 2 0 0 0 0 3 0 0 0 0 0 0 16 0 1714.7693 A0A024RBB9;Q9Y2U8 A0A024RBB9 538 553 LEMD3 Inner nuclear membrane protein Man1 yes no 3 0.046652 61.444 1 0.19939 0.28147 NaN 1 Median 0.19939 0.28147 NaN 1 0 Median NaN NaN NaN 0 0 Median 2684100 2008900 675210 2684100 2008900 675210 0 0 0 6711 269 6861 24583 37178 37178 0 LAQPYVGVFLK VKNKKLVELLRRKVRLAQPYVGVFLKRDDS RKVRLAQPYVGVFLKRDDSNESDVVESLDE R L A L K R 1 0 0 0 0 1 0 1 0 0 2 1 0 1 1 0 0 0 1 2 0 0 11 0 1233.7121 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0;K7EQF8 K7EJE8 45 55 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 2 0.0052809 80.165 3 0.42794 0.55801 NaN 1 Median 0.42794 0.55801 NaN 1 0 Median NaN NaN NaN 0 0 Median 8527700 7669000 858660 8527700 7669000 858660 0 0 0 6712 780 6862 24584;24585;24586 37179;37180;37181 37181 3 LAQQMENRPSVQAALK SMQQQQQLASARNRRLAQQMENRPSVQAAL AQQMENRPSVQAALKLKQSLKQRLGKSNIQ R L A L K L 3 1 1 0 0 3 1 0 0 0 2 1 1 0 1 1 0 0 0 1 0 0 16 1 1782.9411 X6R700;Q9Y3Y2;A0A087X1B7;Q5T7Y7 X6R700 30 45 CHTOP Chromatin target of PRMT1 protein yes no 3 0.0002799 48.883 1 0.27939 0.43391 NaN 1 Median NaN NaN NaN 0 0 Median 0.27939 0.43391 NaN 1 0 Median 10464000 7849000 2615100 0 0 0 10464000 7849000 2615100 6713 1822 6863 24587 37182 37182 850 1 LAQQVCHAIANISDR LVSIGLDEKFPQDYRLAQQVCHAIANISDR LAQQVCHAIANISDRRKTSLGKRHPPFRLP R L A D R R 3 1 1 1 1 2 0 0 1 2 1 0 0 0 0 1 0 0 0 1 0 0 15 0 1694.8522 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 811 825 NCAPD2 Condensin complex subunit 1 yes no 2;3 6.0111E-21 149.69 6 3 0.66931 0.91934 30.725 9 Median 0.71007 0.97339 7.5101 6 0 Median 0.35646 0.55546 7.5052 3 0 Median 272510000 170980000 101530000 223110000 137150000 85954000 49406000 33826000 15580000 6714 757 6864 24588;24589;24590;24591;24592;24593;24594;24595;24596 37183;37184;37185;37186;37187;37188;37189;37190;37191;37192;37193 37187 11 LAQVQVQK FDPSTKIYEISNRWKLAQVQVQKDSKEAVK EISNRWKLAQVQVQKDSKEAVKKKAAEQTA K L A Q K D 1 0 0 0 0 3 0 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 8 0 912.53927 Q01780 Q01780 726 733 EXOSC10 Exosome component 10 yes yes 2 0.0047683 94.401 1 0.61518 0.78057 NaN 1 Median 0.61518 0.78057 NaN 1 0 Median NaN NaN NaN 0 0 Median 6700700 4285400 2415300 6700700 4285400 2415300 0 0 0 6715 1433 6865 24597 37194 37194 1 LASADDIGTLICK KSKTKGNDFFIDDSKLASADDIGTLICKNK SKLASADDIGTLICKNKKPLIQEESDTIVS K L A C K N 2 0 0 2 1 0 0 1 0 2 2 1 0 0 0 1 1 0 0 0 0 0 13 0 1375.7017 E7ETD6;Q12830;F5GXF5 E7ETD6 1207 1219 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.011703 93.561 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6716 1015 6866 24598 37195 37195 1 LASAFTEEQAVLYNQR AAIEAFNKCKTIYEKLASAFTEEQAVLYNQ ASAFTEEQAVLYNQRVEEISPNIRYCAYNI K L A Q R V 3 1 1 0 0 2 2 0 0 0 2 0 0 1 0 1 1 0 1 1 0 0 16 0 1838.9163 Q9UHB9;B4DVI7;B3KMI9 Q9UHB9 221 236 SRP68 Signal recognition particle subunit SRP68 yes no 2 1.2181E-77 221.6 4 1 0.54977 0.7402 11.372 2 Median 0.54977 0.7402 11.372 2 0 Median NaN NaN NaN 0 0 Median 15487000 9575700 5911100 12589000 9575700 3012900 2898200 0 2898200 6717 1784 6867 24599;24600;24601;24602;24603 37196;37197;37198;37199;37200;37201;37202;37203;37204 37200 9 LASDNVSIDQFLR SSEARFSSKNIKDLRLASDNVSIDQFLRKR LRLASDNVSIDQFLRKRHEPESVSSDVSEQ R L A L R K 1 1 1 2 0 1 0 0 0 1 2 0 0 1 0 2 0 0 0 1 0 0 13 0 1476.7573 A8K124;B4DHL1;A0A024R5W1;Q6N043 A8K124 873 885 SUHW4;ZNF280D Zinc finger protein 280D yes no 2 0.021707 35.496 1 0.54802 0.74907 NaN 1 Median 0.54802 0.74907 NaN 1 0 Median NaN NaN NaN 0 0 Median 4281500 2689300 1592200 4281500 2689300 1592200 0 0 0 6718 151 6868 24604 37205 37205 1 LASEEPPDDEEALATIR LIASTFVDQCKTVLKLASEEPPDDEEALAT SEEPPDDEEALATIRLLDVLCEMTVNTELL K L A I R L 3 1 0 2 0 0 4 0 0 1 2 0 0 0 2 1 1 0 0 0 0 0 17 0 1854.8847 Q9UBB4;B1AHE4 Q9UBB4 289 305 ATXN10 Ataxin-10 yes no 2 0.0011854 83.243 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4936100 4936100 0 4936100 4936100 0 0 0 0 6719 1780 6869 24605;24606 37206;37207 37207 2 LASFLK GSSRVAKTNSLRRRKLASFLKDFDREVEIR KTNSLRRRKLASFLKDFDREVEIRIKQIES K L A L K D 1 0 0 0 0 0 0 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 6 0 677.41121 A8K7A2;Q53HL2 A8K7A2 21 26 CDCA8 Borealin yes no 2 0.044719 104.94 2 1.0566 1.3712 9.9977 2 Median 1.0566 1.3712 9.9977 2 0 Median NaN NaN NaN 0 0 Median 150610000 74337000 76278000 150610000 74337000 76278000 0 0 0 6720 632 6870 24607;24608 37208;37209 37209 2 LASGEDDPFDSDFSCPVK SLYVFECVELELALKLASGEDDPFDSDFSC GEDDPFDSDFSCPVKLHRDPKCPSRYHCTH K L A V K L 1 0 0 4 1 0 1 1 0 0 1 1 0 2 2 3 0 0 0 1 0 0 18 0 1984.836 B4DP20;J3KMX1;Q99567;B7Z5I6 B4DP20 246 263 NUP88 Nuclear pore complex protein Nup88 yes no 2 0.015443 71.933 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 849430 849430 0 849430 849430 0 0 0 0 6721 844 6871 24609 37210 37210 1 LASGVEGSDIPDDGK KIVEEPQSNRSVTFKLASGVEGSDIPDDGK LASGVEGSDIPDDGKLIGFAQLSIS_____ K L A G K L 1 0 0 3 0 0 1 3 0 1 1 1 0 0 1 2 0 0 0 1 0 0 15 0 1458.6838 A0A024R2M7;O95747 A0A024R2M7 503 517 OXSR1 Serine/threonine-protein kinase OSR1 yes no 2 2.7708E-06 120.03 3 2 0.46318 0.58276 45.368 2 Median 0.46318 0.58276 45.368 2 0 Median NaN NaN NaN 0 0 Median 21316000 9569900 11746000 13543000 9569900 3973000 7773300 0 7773300 6722 88 6872 24610;24611;24612;24613;24614 37211;37212;37213;37214;37215;37216;37217 37211 7 LASIVEQVSVLQNQGR AVVTRGDECGLALGRLASIVEQVSVLQNQG ASIVEQVSVLQNQGREMMLVTSGAVAFGKQ R L A G R E 1 1 1 0 0 3 1 1 0 1 2 0 0 0 0 2 0 0 0 3 0 0 16 0 1739.953 P54886 P54886 95 110 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 6.6057E-60 222.73 4 2 1.4255 1.9131 25.195 6 Median 1.3942 1.8483 5.5876 4 0 Median 1.9932 2.9467 13.347 2 0 Median 73740000 30244000 43496000 39807000 17367000 22440000 33933000 12877000 21056000 6723 1375 6873 24615;24616;24617;24618;24619;24620 37218;37219;37220;37221;37222;37223;37224 37219 7 LASIVTPR VAQDWARSVRLREFRLASIVTPRNGHGIGG VRLREFRLASIVTPRNGHGIGGRGGGARDA R L A P R N 1 1 0 0 0 0 0 0 0 1 1 0 0 0 1 1 1 0 0 1 0 0 8 0 855.5178 L0R5A1 L0R5A1 61 68 CSF2RB yes yes 2 0.00018454 133.47 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1108400000 1108400000 0 889600000 889600000 0 218800000 218800000 0 6724 1157 6874 24621;24622;24623;24624;24625 37225;37226;37227;37228;37229 37225 5 LASLFSSLEPQIQPVYVPVPK SLFRGEHHSRGGTGRLASLFSSLEPQIQPV SLEPQIQPVYVPVPKQTIKKTKRNEEEEST R L A P K Q 1 0 0 0 0 2 1 0 0 1 3 1 0 1 4 3 0 0 1 3 0 0 21 0 2311.2828 P42696;A2A2V2;Q5TCT4;H7C5M1 P42696 56 76 RBM34 RNA-binding protein 34 yes no 2 1.8283E-38 168.82 4 1.0818 1.354 2.4579 4 Median 1.0818 1.354 2.4579 4 0 Median NaN NaN NaN 0 0 Median 93799000 45665000 48134000 93799000 45665000 48134000 0 0 0 6725 1339 6875 24626;24627;24628;24629 37230;37231;37232;37233;37234;37235;37236;37237 37233 8 LASLGLK LTPLGREQAELTGLRLASLGLKFNKIVHSS QAELTGLRLASLGLKFNKIVHSSMTRAIET R L A L K F 1 0 0 0 0 0 0 1 0 0 3 1 0 0 0 1 0 0 0 0 0 0 7 0 700.44833 Q96HS1 Q96HS1 135 141 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.020089 99.919 2 0.72283 0.90252 1.6062 2 Median 0.72283 0.90252 1.6062 2 0 Median NaN NaN NaN 0 0 Median 56507000 31292000 25216000 56507000 31292000 25216000 0 0 0 6726 1688 6876 24630;24631 37238;37239 37239 2 LASLNAEALNNLLLER PSSEDPGLAQPRKRRLASLNAEALNNLLLE ASLNAEALNNLLLEREDTSSLAGTRRSRAG R L A E R E 3 1 3 0 0 0 2 0 0 0 6 0 0 0 0 1 0 0 0 0 0 0 16 0 1752.9734 A0A024R9K2;Q8TBE0 A0A024R9K2 119 134 BAHD1 Bromo adjacent homology domain-containing 1 protein yes no 2 0.010588 74.987 1 0.59514 0.84502 NaN 1 Median 0.59514 0.84502 NaN 1 0 Median NaN NaN NaN 0 0 Median 1610000 1112700 497320 1610000 1112700 497320 0 0 0 6727 224 6877 24632 37240 37240 1 LASQANIAQVLAELK DPIYVKLEKLDIMIRLASQANIAQVLAELK LASQANIAQVLAELKEYATEVDVDFVRKAV R L A L K E 4 0 1 0 0 2 1 0 0 1 3 1 0 0 0 1 0 0 0 1 0 0 15 0 1567.8934 C9J1E7;A0A087WYD1;A0A087WU93;A0A087WZQ6;B4E261;B4DWG4;A0A087X253;H0UID5;H0UID4;H0UID3;Q68DI0;A8K916;A8K0G3;A0A140VJE8;P63010;Q10567 C9J1E7 345 359 AP1B1;AP2B1;DKFZp781K0743 AP complex subunit beta;AP-2 complex subunit beta;AP-1 complex subunit beta-1 yes no 2 4.7501E-05 78.692 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1345500 1345500 0 1345500 1345500 0 0 0 0 6728 341 6878 24633 37241 37241 1 LASQGDSISSQLGPIHPPPR QKRQLEDGDQPESKKLASQGDSISSQLGPI DSISSQLGPIHPPPRTSMTEEYRVPDGMVG K L A P R T 1 1 0 1 0 2 0 2 1 2 2 0 0 0 4 4 0 0 0 0 0 0 20 0 2056.0702 A0A087WTP3;Q92945;M0R0I5;B4DV73 A0A087WTP3 123 142 KHSRP Far upstream element-binding protein 2 yes no 3 0.051101 23.447 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2060900 0 2060900 0 0 0 2060900 0 2060900 6729 335 6879 24634 37242 37242 1 LASQLTESSQTSISLESDLK SSCKAKNILTKAKNKLASQLTESSQTSISL TESSQTSISLESDLKHITSEADSDPGNPVE K L A L K H 1 0 0 1 0 2 2 0 0 1 4 1 0 0 0 6 2 0 0 0 0 0 20 0 2136.0798 Q562F6;B7Z7S9 Q562F6 1005 1024 SGOL2 Shugoshin-like 2 yes no 2 1.0518E-26 166.04 3 0.94773 1.2313 53.109 2 Median 0.94773 1.2313 53.109 2 0 Median NaN NaN NaN 0 0 Median 8212600 4053900 4158700 8212600 4053900 4158700 0 0 0 6730 1546 6880 24635;24636;24637 37243;37244;37245;37246;37247;37248;37249 37246 7 LASSDDFISQNVIPLEAYR LNSRRIIPRPFVAQKLASSDDFISQNVIPL DDFISQNVIPLEAYRNGLKTEALSVSASEE K L A Y R N 2 1 1 2 0 1 1 0 0 2 2 0 0 1 1 3 0 0 1 1 0 0 19 0 2137.0691 A7E234;Q9H582;Q8NEI6;Q9H8J8;Q9NVH8 A7E234 1110 1128 ZNF644 Zinc finger protein 644 yes no 2 1.1796E-06 101.61 2 0.65768 0.90124 NaN 1 Median 0.65768 0.90124 NaN 1 0 Median NaN NaN NaN 0 0 Median 4145900 3480800 665110 4145900 3480800 665110 0 0 0 6731 573 6881 24638;24639 37250;37251 37250 2 LASSVLR ______________________________ ______________________________ R L A L R C 1 1 0 0 0 0 0 0 0 0 2 0 0 0 0 2 0 0 0 1 0 0 7 0 744.44939 J3QR09;J3KTE4;Q53G49;P84098;J3QL15 J3QR09 7 13 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 2 0.018098 90.986 2 2 0.53494 0.78237 40.29 4 Median 0.84059 1.1426 10.717 2 0 Median 0.35738 0.57339 1.1086 2 0 Median 187030000 122110000 64922000 89719000 50029000 39691000 97309000 72078000 25231000 6732 1138 6882 24640;24641;24642;24643 37252;37253;37254;37255;37256;37257 37257 6 LASTIADNQEQDLEK QCENLKDTVENLTAKLASTIADNQEQDLEK LASTIADNQEQDLEKTRQYSQKLGLLTEQL K L A E K T 2 0 1 2 0 2 2 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 15 0 1673.8108 A8K8N3;Q96R06;K7ELC8;E9PMD0 A8K8N3 852 866 SPAG5 Sperm-associated antigen 5 yes no 2 1.4806E-08 127.56 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4115500 4115500 0 4115500 4115500 0 0 0 0 6733 642 6883 24644;24645;24646 37258;37259;37260 37259 3 LASTNSSVLGADLPSSMK EEEEAEAETAKATPRLASTNSSVLGADLPS TNSSVLGADLPSSMKEKAKAETEKAGKTGN R L A M K E 2 0 1 1 0 0 0 1 0 0 3 1 1 0 1 5 1 0 0 1 0 0 18 0 1776.8928 E7ETY2;H0YA99;J3KQ96;Q13428 E7ETY2 105 122 TCOF1 Treacle protein no no 2 0.0001042 52.265 2 0.91047 1.4577 6.2909 2 Median NaN NaN NaN 0 0 Median 0.91047 1.4577 6.2909 2 0 Median 100530000 52695000 47839000 0 0 0 100530000 52695000 47839000 6734 1016;1135;1469 6884 24647;24648 37261;37262 37262 363 2 LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKK NGKNIEDVIAQGIGKLASVPAGGAVAVSAA APAAGSAPAAAEEKKDEKKEESEESDDDMG K L A K K D 14 0 0 0 0 0 2 4 0 0 1 2 0 0 4 4 0 0 0 3 0 0 34 1 2901.5196 A0A024RCA7;P05387;H0YDD8 A0A024RCA7 62 95 RPLP2 60S acidic ribosomal protein P2 yes no 3 0.046017 5.5163 1 0.62123 0.89225 NaN 1 Median NaN NaN NaN 0 0 Median 0.62123 0.89225 NaN 1 0 Median 3123600 1781400 1342200 0 0 0 3123600 1781400 1342200 6735 291 6885 24649 37263;37264 37264 2 LASYLDK LSGNEKVTMQNLNDRLASYLDKVRALEESN TMQNLNDRLASYLDKVRALEESNYELEGKI R L A D K V 1 0 0 1 0 0 0 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 7 0 808.43307 CON__P02533;P02533;CON__A2A4G1;B4DJM5;CON__Q99456;Q99456;CON__Q04695;Q04695;CON__Q9QWL7;K7EPJ9;B4E2P9;CON__P05784;CON__P08779;P08779;B4DWU0;B4E2J5;CON__P13645;P13645;CON__P35527;P35527 CON__P13645 157 163 KRT14;KRT12;KRT17;KRT16;KRT10;KRT9 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 12;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 9 no no 2 0.021629 106.42 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 485030000 485030000 0 137690000 137690000 0 347340000 347340000 0 + 6736 960;963;949;958;954;965 6886 24650;24651;24652 37265;37266;37267 37266 3 LASYLDR GIQNEKETMQSLNDRLASYLDRVRSLETEN TMQSLNDRLASYLDRVRSLETENRRLESKI R L A D R V 1 1 0 1 0 0 0 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 7 0 836.43922 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965 F8VZY9 91 97 KRT18 Keratin, type I cytoskeletal 18 yes no 1;2 0.017224 162.31 4 1 0.23697 0.32819 98.842 5 Median 0.23465 0.32553 8.2465 4 0 Median 1.8891 3.0046 NaN 1 0 Median 493660000 380340000 113320000 444150000 361570000 82580000 49508000 18765000 30742000 6737 252 6887 24653;24654;24655;24656;24657 37268;37269;37270;37271;37272;37273 37272 6 LATAQFK EENSFKRLMIVKKEKLATAQFKINKKHEDV LMIVKKEKLATAQFKINKKHEDVKQYKRTV K L A F K I 2 0 0 0 0 1 0 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 7 0 777.43849 Q9BZD4;A0A024R8Y0;E9PQC4 Q9BZD4 352 358 NUF2;CDCA1 Kinetochore protein Nuf2 yes no 2 0.045062 51.572 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2538700 2538700 0 0 0 0 2538700 2538700 0 6738 1727 6888 24658 37274 37274 1 LATGSDDNCAAFFEGPPFK KVINSVDIKQSRPYRLATGSDDNCAAFFEG SDDNCAAFFEGPPFKFKFTIGDHSRFVNCV R L A F K F 3 0 1 2 1 0 1 2 0 0 1 1 0 3 2 1 1 0 0 0 0 0 19 0 2042.9044 V9HWG7;Q53H17;Q53GN4;Q59ER5;O75083;D6RD66;B3KXN4 V9HWG7 162 180 HEL-S-52;WDR1 WD repeat-containing protein 1 yes no 2 1.6992E-10 119.17 5 0.89718 1.1785 2.0026 2 Median 0.89718 1.1785 2.0026 2 0 Median NaN NaN NaN 0 0 Median 9533800 4192300 5341500 9533800 4192300 5341500 0 0 0 6739 1195 6889 24659;24660;24661;24662;24663 37275;37276;37277;37278;37279;37280;37281 37275 7 LATNAAVTVLR AGILDTYLGKYWAIKLATNAAVTVLRVDQI WAIKLATNAAVTVLRVDQIIMAKPAGGPKP K L A L R V 3 1 1 0 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 2 0 0 11 0 1127.6663 Q7Z759;Q53HU0;P50990;H7C2U0 Q7Z759 459 469 CCT8 T-complex protein 1 subunit theta yes no 2 0.018246 83.869 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5396800 5396800 0 5396800 5396800 0 0 0 0 6740 1359 6890 24664 37282 37282 1 LATNTSAPDLK PTSAKPSSTTPRLSRLATNTSAPDLKNVRS RLSRLATNTSAPDLKNVRSKVGSTENIKHQ R L A L K N 2 0 1 1 0 0 0 0 0 0 2 1 0 0 1 1 2 0 0 0 0 0 11 0 1129.5979 E7EVA0;P27816;A0A024R2V0;H0Y2V1;F8W9U4;Q86Y04;B4DSQ1;H7C4C5;Q8NDS5;B5MEG9 E7EVA0 2068 2078 MAP4;DKFZp547H1810 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 0.00023901 86.882 3 0.88334 1.1108 1.7909 2 Median 0.88334 1.1108 1.7909 2 0 Median NaN NaN NaN 0 0 Median 13141000 6331800 6809700 13141000 6331800 6809700 0 0 0 6741 1017 6891 24665;24666;24667 37283;37284;37285 37285 3 LATQLTGPVMPVR PSAPKKGDSSAEELKLATQLTGPVMPVRNV LKLATQLTGPVMPVRNVYKKEKARVITEEE K L A V R N 1 1 0 0 0 1 0 1 0 0 2 0 1 0 2 0 2 0 0 2 0 0 13 0 1381.7752 Q6NZ55;A8K4C8;P26373;O60250 Q6NZ55 146 158 RPL13 60S ribosomal protein L13 yes no 2 4.2063E-37 200.71 12 2 0.7263 0.97596 11.865 11 Median 0.72742 1.0016 6.8589 9 0 Median 0.45898 0.75778 1.9697 2 0 Median 674680000 430840000 243840000 253710000 144920000 108790000 420980000 285920000 135050000 6742 604 6892;6893 24668;24669;24670;24671;24672;24673;24674;24675;24676;24677;24678;24679;24680;24681 37286;37287;37288;37289;37290;37291;37292;37293;37294;37295;37296;37297;37298;37299;37300;37301;37302;37303;37304;37305;37306;37307;37308;37309;37310 37306 206 25 LATQSNEITIPVTFESR LSPEGTLTVEAPMPKLATQSNEITIPVTFE TQSNEITIPVTFESRAQLGGPEAAKSDETA K L A S R A 1 1 1 0 0 1 2 0 0 2 1 0 0 1 1 2 3 0 0 1 0 0 17 0 1904.9844 V9HW43;P04792;B4DL87;C9J3N8 V9HW43 172 188 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 2 6.4325E-156 286.53 5 2 0.4283 0.58806 110.09 6 Median 0.35841 0.49389 18.234 4 0 Median 2.6517 4.3845 0.022532 2 0 Median 1220300000 694900000 525450000 734460000 563010000 171450000 485890000 131890000 353990000 6743 1232 6894 24682;24683;24684;24685;24686;24687;24688 37311;37312;37313;37314;37315;37316;37317;37318;37319;37320;37321;37322 37312 12 LATSVLK SDTVLMFNVALVLQRLATSVLKDEKSNLKE NVALVLQRLATSVLKDEKSNLKEVLNAVKE R L A L K D 1 0 0 0 0 0 0 0 0 0 2 1 0 0 0 1 1 0 0 1 0 0 7 0 730.45889 A8K6X9;Q6PD62 A8K6X9 764 770 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2 0.016249 114.59 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3311400 3311400 0 3311400 3311400 0 0 0 0 6744 629 6895 24689 37323 37323 1 LATVLSGACDGEVR GHRDGVNCLAKHPEKLATVLSGACDGEVRI KLATVLSGACDGEVRIWNLTQRNCIRTIQA K L A V R I 2 1 0 1 1 0 1 2 0 0 2 0 0 0 0 1 1 0 0 2 0 0 14 0 1446.7137 A0A087WT20;Q9NV06;B3KME9 A0A087WT20 231 244 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2 3.7811E-14 135.99 4 2 0.95979 1.2884 27.815 6 Median 0.99354 1.3222 3.5335 4 0 Median 0.55165 0.77539 7.8462 2 0 Median 94141000 49584000 44557000 74562000 37495000 37067000 19579000 12089000 7490100 6745 331 6896 24690;24691;24692;24693;24694;24695 37324;37325;37326;37327;37328;37329;37330;37331;37332;37333;37334;37335;37336;37337 37332 14 LATVVGENGSVLR QLSSRRLRSKDSVEKLATVVGENGSVLRRV EKLATVVGENGSVLRRVTRAAAAAAAATMA K L A L R R 1 1 1 0 0 0 1 2 0 0 2 0 0 0 0 1 1 0 0 3 0 0 13 0 1313.7303 Q9NQS7;B3KPD3;E9PM67 Q9NQS7 110 122 INCENP Inner centromere protein yes no 2 8.7538E-09 139.15 4 2 0.90707 1.2185 11.423 6 Median 0.91461 1.2389 2.0542 4 0 Median 0.62344 0.99331 2.8703 2 0 Median 163950000 92091000 71855000 86118000 44369000 41750000 77827000 47722000 30105000 6746 1752 6897 24696;24697;24698;24699;24700;24701 37338;37339;37340;37341;37342;37343;37344;37345;37346;37347;37348;37349 37343 12 LATVVGENGSVLRR QLSSRRLRSKDSVEKLATVVGENGSVLRRV KLATVVGENGSVLRRVTRAAAAAAAATMAL K L A R R V 1 2 1 0 0 0 1 2 0 0 2 0 0 0 0 1 1 0 0 3 0 0 14 1 1469.8314 Q9NQS7;B3KPD3;E9PM67 Q9NQS7 110 123 INCENP Inner centromere protein yes no 3 0.0012162 41.621 1 1 0.81173 1.0613 34.056 2 Median 1.0637 1.3503 NaN 1 0 Median 0.61942 0.83417 NaN 1 0 Median 10765000 6297000 4467800 5457500 2762100 2695300 5307400 3534900 1772500 6747 1752 6898 24702;24703 37350;37351;37352 37352 3 LATYGITVAELTGDHQLCK MRSLVQEMVGSFGKRLATYGITVAELTGDH GITVAELTGDHQLCKEEISATQIIVCTPEK R L A C K E 2 0 0 1 1 1 1 2 1 1 3 1 0 0 0 0 3 0 1 1 0 0 19 0 2089.0514 O75643;A4FU77;Q5ZF01 O75643 559 577 SNRNP200;ASCC3L1 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 0.02741 39.853 1 0.60454 0.78709 NaN 1 Median 0.60454 0.78709 NaN 1 0 Median NaN NaN NaN 0 0 Median 4817000 3233800 1583300 4817000 3233800 1583300 0 0 0 6748 1206 6899 24704 37353 37353 1 LAVDALAEGGSEAYSR LAPGYLPPHYKEYYRLAVDALAEGGSEAYS AVDALAEGGSEAYSRFLATEGAPDFLCPEE R L A S R F 4 1 0 1 0 0 2 2 0 0 2 0 0 0 0 2 0 0 1 1 0 0 16 0 1607.7791 Q6ZRV2;F4ZCG5;F4ZCG4 Q6ZRV2 30 45 FAM83H Protein FAM83H yes no 2 6.8716E-06 129.37 3 0.50004 0.67935 NaN 1 Median 0.50004 0.67935 NaN 1 0 Median NaN NaN NaN 0 0 Median 2263700 1882300 381420 2263700 1882300 381420 0 0 0 6749 1603 6900 24705;24706;24707 37354;37355;37356 37355 3 LAVDEEENADNNTK LARQVDGDNSHVEMKLAVDEEENADNNTKA KLAVDEEENADNNTKANVTKPKRCSGSICY K L A T K A 2 0 3 2 0 0 3 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 14 0 1560.6904 A8K6Q8;P02786;F8WBE5 A8K6Q8 40 53 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 0.0024483 47.062 2 1.451 1.9658 8.1019 2 Median NaN NaN NaN 0 0 Median 1.451 1.9658 8.1019 2 0 Median 6470000 2631400 3838600 0 0 0 6470000 2631400 3838600 6750 626 6901 24708;24709 37357;37358 37358 2 LAVDTFPAR QCGVTSPSSAEATGKLAVDTFPARVIKHRA AEATGKLAVDTFPARVIKHRAAFLEAKGQG K L A A R V 2 1 0 1 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 1 0 0 9 0 988.53418 Q9HC52 Q9HC52 275 283 CBX8 Chromobox protein homolog 8 yes yes 2 0.0051903 72.485 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3933400 3933400 0 3933400 3933400 0 0 0 0 6751 1750 6902 24710;24711 37359;37360 37359 2 LAVEALSSLDGDLAGR LPPHCSRGERRAIEKLAVEALSSLDGDLAG AVEALSSLDGDLAGRYYALKSMTEAEQQQL K L A G R Y 3 1 0 2 0 0 1 2 0 0 4 0 0 0 0 2 0 0 0 1 0 0 16 0 1585.8312 V9HWH2;V9HW77;A0A0S2Z471;P12277;B4DP56;G3V4N7 V9HWH2 157 172 HEL-S-29;HEL-211;CKB Creatine kinase B-type yes no 2 0.0038303 90.731 3 2 1.973 2.9347 NaN 1 Median NaN NaN NaN 0 0 Median 1.973 2.9347 NaN 1 0 Median 22468000 8238100 14229000 6259900 6259900 0 16208000 1978200 14229000 6752 460 6903 24712;24713;24714;24715;24716 37361;37362;37363;37364;37365 37363 5 LAVEILNK GEGRSKKEAKNAAAKLAVEILNKEKKAVSP AKNAAAKLAVEILNKEKKAVSPLLLTTTNS K L A N K E 1 0 1 0 0 0 1 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 8 0 898.54877 B7ZKK7;P19525;Q8IW76;Q05CP4;Q6PK38;F8WBH4;C9JZT2 B7ZKK7 70 77 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 2 0.05009 43.769 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1932100 0 1932100 0 0 0 1932100 0 1932100 6753 923 6904 24717 37366 37366 1 LAVLPYELR REVVTEIRDKATRRRLAVLPYELRFKEPLP KATRRRLAVLPYELRFKEPLPEYVRLVTEF R L A L R F 1 1 0 0 0 0 1 0 0 0 3 0 0 0 1 0 0 0 1 1 0 0 9 0 1072.6281 B2RAR2;Q9ULX3;H3BUR4 B2RAR2 46 54 NOB1 RNA-binding protein NOB1 yes no 2 0.012021 60.436 2 0.49223 0.66653 3.7717 2 Median 0.49223 0.66653 3.7717 2 0 Median NaN NaN NaN 0 0 Median 12744000 8445200 4298900 12744000 8445200 4298900 0 0 0 6754 726 6905 24718;24719 37367;37368 37367 2 LAVNMVPFPR TCLRFPGQLNADLRKLAVNMVPFPRLHFFM ADLRKLAVNMVPFPRLHFFMPGFAPLTSRG K L A P R L 1 1 1 0 0 0 0 0 0 0 1 0 1 1 2 0 0 0 0 2 0 0 10 0 1142.627 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;Q9BUU9;B4E052;B4DQN9;B4DMU8;Q96B85;B4DXZ5;Q1KSF8;Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;Q96HX0;B4DFH6;Q9BVA1;Q13885;A0A024QZU2;B2R6L0;O43209;B7Z4N1;Q9UGA2;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;Q2NKY5;Q3ZCM7;A0A075B736;Q5SQY0;A0A183YE00;P04350;B4DJ43;B4DE77;Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q53G92;Q3ZCR3;Q9BUF5;K7ESM5;B3KS31;B4DP54;B4E386 Q5JP53 235 244 TUBB;XTP3TPATP1;TUBB2C;TUBB4B;TUBB2B;TUBB2A;DKFZp566F223;TUBB1;TUBB6;TUBB8;TUBB4A;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-3 chain;Tubulin beta-6 chain no no 2 4.8395E-10 171.38 4 5 0.4179 0.56667 136.73 7 Median 0.39355 0.527 5.3348 4 0 Median 3.1434 5.1214 47.217 3 0 Median 225850000 90937000 134910000 87759000 64105000 23654000 138090000 26832000 111260000 6755 1241;1423;1230;1479;416;1528;1716;1532 6906;6907 24720;24721;24722;24723;24724;24725;24726;24727;24728 37369;37370;37371;37372;37373;37374;37375;37376;37377;37378;37379;37380;37381 37369 136 13 LAVQQVEEAQQLR IKFQSPYEEQLEQQRLAVQQVEEAQQLREH QRLAVQQVEEAQQLREHQEALHQQRLQGHL R L A L R E 2 1 0 0 0 4 2 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 13 0 1510.8104 F8W785;O00461 F8W785 388 400 GOLIM4 Golgi integral membrane protein 4 yes no 2 0.0017194 93.667 1 0.9728 1.2896 NaN 1 Median 0.9728 1.2896 NaN 1 0 Median NaN NaN NaN 0 0 Median 893290 519820 373470 893290 519820 373470 0 0 0 6756 1070 6908 24729 37382 37382 1 LAVSAQSEPAR LLVPEIDEVMRKVSKLAVSAQSEPARVQCR KVSKLAVSAQSEPARVQCRQVFLKYILDYP K L A A R V 3 1 0 0 0 1 1 0 0 0 1 0 0 0 1 2 0 0 0 1 0 0 11 0 1127.5935 O75691;B4DN27 O75691 2251 2261 UTP20 Small subunit processome component 20 homolog yes no 2 0.001286 90.906 2 1 1.1485 1.6398 31.15 2 Median 0.96764 1.3156 NaN 1 0 Median 1.3632 2.0438 NaN 1 0 Median 31129000 20048000 11081000 24018000 17122000 6896600 7110900 2926200 4184700 6757 1207 6909 24730;24731;24732 37383;37384;37385 37384 3 LAVVCR YIDLTLSENKEEPVKLAVVCRDGQVHLFEH SENKEEPVKLAVVCRDGQVHLFEHILNGYC K L A C R D 1 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 6 0 716.40033 Q15061;C9IZK7 Q15061 287 292 WDR43 WD repeat-containing protein 43 yes no 2 0.023891 123.06 1 1 0.67258 0.92543 25.842 2 Median 0.81954 1.111 NaN 1 0 Median 0.55197 0.77088 NaN 1 0 Median 25368000 14903000 10466000 19044000 10757000 8286500 6324900 4145500 2179400 6758 1505 6910 24733;24734 37386;37387 37386 2 LAVYIDR TRLQEKEDLQELNDRLAVYIDRVRSLETEN DLQELNDRLAVYIDRVRSLETENAGLRLRI R L A D R V 1 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 7 0 848.4756 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;W5X314 P02545 42 48 LMNA Prelamin-A/C;Lamin-A/C yes no 2 0.030687 97.473 2 0.66813 0.91353 0.70867 2 Median 0.66813 0.91353 0.70867 2 0 Median NaN NaN NaN 0 0 Median 178330000 105680000 72654000 178330000 105680000 72654000 0 0 0 6759 1229 6911 24735;24736 37388;37389;37390 37388 3 LAWEQQEPGER SYNPPPEYLLSEEERLAWEQQEPGERKLSF EEERLAWEQQEPGERKLSFLPRKFPSLRAV R L A E R K 1 1 0 0 0 2 3 1 0 0 1 0 0 0 1 0 0 1 0 0 0 0 11 0 1341.6313 B2RDN4;Q14137;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 B2RDN4 328 338 BOP1 Ribosome biogenesis protein BOP1 yes no 2 3.8861E-08 123.79 2 0.64886 0.96496 9.6897 2 Median NaN NaN NaN 0 0 Median 0.64886 0.96496 9.6897 2 0 Median 29982000 18024000 11958000 0 0 0 29982000 18024000 11958000 6760 738 6912 24737;24738 37391;37392;37393 37391 3 LAYELYTEALGIDPNNIK KKEDGNKAFKEGNYKLAYELYTEALGIDPN ELYTEALGIDPNNIKTNAKLYCNRGTVNSK K L A I K T 2 0 2 1 0 0 2 1 0 2 3 1 0 0 1 0 1 0 2 0 0 0 18 0 2036.0466 K7EPP7;K7ESP1;B4DKK3;B7Z9W6;Q59EH7;Q99615;K7EJ24 K7EPP7 218 235 DNAJC7 DnaJ homolog subfamily C member 7 yes no 2 2.1316E-18 142.39 2 0.49514 0.64991 35.927 2 Median 0.49514 0.64991 35.927 2 0 Median NaN NaN NaN 0 0 Median 4170200 2734200 1436000 4170200 2734200 1436000 0 0 0 6761 820 6913 24739;24740 37394;37395;37396;37397 37394 4 LAYIAHPK VKPKIPKGVSRKLDRLAYIAHPKLGKRARA VSRKLDRLAYIAHPKLGKRARARIAKGLRL R L A P K L 2 0 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 1 0 0 0 8 0 911.52289 A0A024R326;Q6IPI1;P47914 A0A024R326 96 103 RPL29 60S ribosomal protein L29 yes no 2;3 0.0060501 103.29 9 2 0.77065 1.0153 13.253 9 Median 0.77629 1.0261 10.086 7 0 Median 0.53787 0.8501 1.3819 2 0 Median 3965800000 2236300000 1729500000 3670300000 2049100000 1621300000 295480000 187190000 108290000 6762 97 6914 24741;24742;24743;24744;24745;24746;24747;24748;24749;24750;24751 37398;37399;37400;37401;37402;37403;37404;37405;37406;37407;37408;37409;37410;37411;37412 37406 15 LAYLQILSEETSVK GTGSTKQEAKQLAAKLAYLQILSEETSVKS KLAYLQILSEETSVKSDYLSSGSFATTCES K L A V K S 1 0 0 0 0 1 2 0 0 1 3 1 0 0 0 2 1 0 1 1 0 0 14 0 1592.8661 B7ZKK7;P19525;Q8IW76;Q05CP4;Q6PK38 B7ZKK7 160 173 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 2 6.3076E-10 111.94 2 0.48161 0.61816 10.993 2 Median 0.48161 0.61816 10.993 2 0 Median NaN NaN NaN 0 0 Median 7457600 5000600 2457000 7457600 5000600 2457000 0 0 0 6763 923 6915 24752;24753 37413;37414;37415 37414 3 LAYQVLAEK KIVGRTKDVKEAVRKLAYQVLAEKVHMRAM KEAVRKLAYQVLAEKVHMRAMSIAQRVMLL K L A E K V 2 0 0 0 0 1 1 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 9 0 1033.5808 Q9BPX3;Q6NUR1 Q9BPX3 227 235 NCAPG Condensin complex subunit 3 yes no 2 3.0617E-05 158.07 4 2 0.74681 0.93349 16.306 6 Median 0.7599 0.94985 8.3562 4 0 Median 0.48551 0.73427 0.76296 2 0 Median 144560000 82210000 62348000 115250000 63766000 51481000 29311000 18444000 10867000 6764 1706 6916 24754;24755;24756;24757;24758;24759 37416;37417;37418;37419;37420;37421;37422;37423;37424;37425;37426;37427;37428 37418 13 LCDEQLSSQSHYDFGLR RTAEVLANKIVPFFKLCDEQLSSQSHYDFG DEQLSSQSHYDFGLRALKSVLVSAGNVKRE K L C L R A 0 1 0 2 1 2 1 1 1 0 3 0 0 1 0 3 0 0 1 0 0 0 17 0 2053.9164 Q14204 Q14204 2075 2091 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 0.00015045 87.99 1 0.4266 0.60561 NaN 1 Median 0.4266 0.60561 NaN 1 0 Median NaN NaN NaN 0 0 Median 2387100 1599600 787530 2387100 1599600 787530 0 0 0 6765 1483 6917 24760 37429 37429 1 LCDRLELASLQCLNETLTSCTK DNEAERVKMMEEVEKLCDRLELASLQCLNE ASLQCLNETLTSCTKEVGKAALEKQIEEIN K L C T K E 1 1 1 1 3 1 2 0 0 0 6 1 0 0 0 2 3 0 0 0 0 0 22 1 2624.2608 Q99543;Q08AR5 Q99543 383 404 DNAJC2 DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed yes no 3 0.0089564 63.559 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 471120 471120 0 471120 471120 0 0 0 0 6766 1704 6918 24761 37430 37430 1 LCDSYEIRPGK FITFCGKEAAQEAVKLCDSYEIRPGKHLGV EAVKLCDSYEIRPGKHLGVCISVANNRLFV K L C G K H 0 1 0 1 1 0 1 1 0 1 1 1 0 0 1 1 0 0 1 0 0 0 11 1 1336.6445 Q0VGD6;Q6MZS5;B2R7W4;O43390;B4DT28;B4DMB1 Q0VGD6 199 209 HNRPR;DKFZp686A13234;HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 3 0.023027 30.55 1 0.60816 0.79099 NaN 1 Median 0.60816 0.79099 NaN 1 0 Median NaN NaN NaN 0 0 Median 11521000 6665900 4855000 11521000 6665900 4855000 0 0 0 6767 711 6919 24762 37431 37431 1 LCEAICPAQAITIEAEPR LRRYPSGEERCIACKLCEAICPAQAITIEA AICPAQAITIEAEPRADGSRRTTRYDIDMT K L C P R A 4 1 0 0 2 1 3 0 0 3 1 0 0 0 2 0 1 0 0 0 0 0 18 0 2040.9972 E9PKH6;A0A024R5K3;E9PPW7;Q53G17;O00217 E9PKH6 98 115 NDUFS8 NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial yes no 2 0.00065422 84.468 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1085200 455340 629840 1085200 455340 629840 0 0 0 6768 146 6920 24763 37432 37432 1 LCEDQNGNPYVK LLEPPSQQRKRQTLRLCEDQNGNPYVKDLN TLRLCEDQNGNPYVKDLNWIHVQDAEEAWK R L C V K D 0 0 2 1 1 1 1 1 0 0 1 1 0 0 1 0 0 0 1 1 0 0 12 0 1435.6402 O95235 O95235 331 342 KIF20A Kinesin-like protein KIF20A yes yes 2 0.038235 81.525 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6769 1215 6921 24764 37433 37433 1 LCEQLSTVIPNSHVYYR ILITTSDRPHGRTVRLCEQLSTVIPNSHVY EQLSTVIPNSHVYYRRGLALKKIIPQCIAR R L C Y R R 0 1 1 0 1 1 1 0 1 1 2 0 0 0 1 2 1 0 2 2 0 0 17 0 2078.0255 Q9H9Y2 Q9H9Y2 159 175 RPF1 Ribosome production factor 1 yes yes 3 0.0004479 81.346 4 0.76462 1.0303 4.9557 4 Median 0.76462 1.0303 4.9557 4 0 Median NaN NaN NaN 0 0 Median 106930000 58118000 48808000 106930000 58118000 48808000 0 0 0 6770 1747 6922 24765;24766;24767;24768 37434;37435;37436;37437;37438 37434 5 LCESLEELQNLNGK KLENEQEKLHVEYNKLCESLEELQNLNGKL KLCESLEELQNLNGKLRSEGQGIWALLGRI K L C G K L 0 0 2 0 1 1 3 1 0 0 4 1 0 0 0 1 0 0 0 0 0 0 14 0 1645.7981 A0A0U1RRH6;O94880;B4DG57 A0A0U1RRH6 661 674 PHF14 PHD finger protein 14 yes no 2 0.0020053 49.35 1 0.83435 1.0706 NaN 1 Median 0.83435 1.0706 NaN 1 0 Median NaN NaN NaN 0 0 Median 3414200 1960000 1454300 3414200 1960000 1454300 0 0 0 6771 487 6923 24769 37439 37439 1 LCFEGLR KIIITVVEEQEQKGRLCFEGLRSLVPAAEL EEQEQKGRLCFEGLRSLVPAAELLESRVID R L C L R S 0 1 0 0 1 0 1 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 7 0 893.44292 Q15149;D3DWL0 Q15149 3109 3115 PLEC;PLEC1 Plectin yes no 2 0.0066247 88.734 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13442000 13442000 0 13442000 13442000 0 0 0 0 6772 1507 6924 24770 37440 37440 1 LCFSTAQHAS YQMKNPNGPYPYTLKLCFSTAQHAS_____ PYTLKLCFSTAQHAS_______________ K L C A S - 2 0 0 0 1 1 0 0 1 0 1 0 0 1 0 2 1 0 0 0 0 0 10 0 1120.4971 B2R959;Q6NTA2;P14866;M0QXS5 B2R959 549 558 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 2 0.0030725 123.72 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63728000 0 0 51472000 0 0 12256000 0 0 6773 719 6925 24771;24772;24773;24774;24775 37441;37442;37443;37444;37445 37441 5 LCGPCSVQAVVLNDK FIFHANFLGKEVIARLCGPCSVQAVVLNDK LCGPCSVQAVVLNDKFQLPVFLDSHFVYSF R L C D K F 1 0 1 1 2 1 0 1 0 0 2 1 0 0 1 1 0 0 0 3 0 0 15 0 1658.812 Q99549;H0Y6J1 Q99549 798 812 MPHOSPH8 M-phase phosphoprotein 8 yes no 2 1.7613E-07 134.18 2 0.80693 1.0251 NaN 1 Median 0.80693 1.0251 NaN 1 0 Median NaN NaN NaN 0 0 Median 3744300 816010 2928300 3744300 816010 2928300 0 0 0 6774 1705 6926 24776;24777 37446;37447 37446 2 LCLAYGGSDVSR SVCCVEDGVSHRNTRLCLAYGGSDVSRCFY NTRLCLAYGGSDVSRCFYWLMQRAGFPYRE R L C S R C 1 1 0 1 1 0 0 2 0 0 2 0 0 0 0 2 0 0 1 1 0 0 12 0 1296.6132 Q9H981 Q9H981 305 316 ACTR8 Actin-related protein 8 yes yes 2 0.015412 84.17 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3771500 3771500 0 3771500 3771500 0 0 0 0 6775 1744 6927 24778;24779;24780 37448;37449;37450 37448 3 LCLELLNVGVESK VRGILNKLTPEKFDKLCLELLNVGVESKLI DKLCLELLNVGVESKLILKGVILLIVDKAL K L C S K L 0 0 1 0 1 0 2 1 0 0 4 1 0 0 0 1 0 0 0 2 0 0 13 0 1472.7909 D3DQV9;Q59G42;B4DZF2;P78344;H0Y3P2;H0YCH5;H0YEC5;H0YD77;H0YE44;H0YCF8;H0YEN8;H0YDC0 D3DQV9 96 108 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.0015053 94.616 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15195000 15195000 0 15195000 15195000 0 0 0 0 6776 877 6928 24781;24782 37451;37452 37451 2 LCLHNLPK HQKLKDQNIFVSRTRLCLHNLPKAVDDKQL IFVSRTRLCLHNLPKAVDDKQLRKLLLSAT R L C P K A 0 0 1 0 1 0 0 0 1 0 3 1 0 0 1 0 0 0 0 0 0 0 8 0 993.54297 A0A024R753;Q9NW13 A0A024R753 489 496 RBM28 RNA-binding protein 28 yes no 2;3 0.020298 49.358 3 1.115 1.382 25.547 2 Median 1.115 1.382 25.547 2 0 Median NaN NaN NaN 0 0 Median 41894000 15194000 26700000 41894000 15194000 26700000 0 0 0 6777 169 6929 24783;24784;24785 37453;37454;37455 37454 3 LCLNICVGESGDR QGEKENPMRELRIRKLCLNICVGESGDRLT RKLCLNICVGESGDRLTRAAKVLEQLTGQT K L C D R L 0 1 1 1 2 0 1 2 0 1 2 0 0 0 0 1 0 0 0 1 0 0 13 0 1491.681 Q5VVD0;P62913;Q5VVC8;Q08ES8;Q5VVC9 Q5VVD0 20 32 RPL11 60S ribosomal protein L11 yes no 2 3.0975E-09 147.74 4 2 0.73546 1.0165 46.019 4 Median 0.72597 0.99635 8.3188 3 0 Median 1.488 2.411 NaN 1 0 Median 570160000 338910000 231250000 443050000 261210000 181850000 127110000 77702000 49406000 6778 1416 6930 24786;24787;24788;24789;24790;24791 37456;37457;37458;37459;37460;37461;37462;37463;37464 37462 9 LCLNICVGESGDRLTR QGEKENPMRELRIRKLCLNICVGESGDRLT CLNICVGESGDRLTRAAKVLEQLTGQTPVF K L C T R A 0 2 1 1 2 0 1 2 0 1 3 0 0 0 0 1 1 0 0 1 0 0 16 1 1861.9139 Q5VVD0;P62913;Q5VVC8;Q5VVC9 Q5VVD0 20 35 RPL11 60S ribosomal protein L11 yes no 3 0.0003321 51.546 2 0.82229 1.124 2.2101 2 Median 0.82229 1.124 2.2101 2 0 Median NaN NaN NaN 0 0 Median 49172000 27351000 21821000 49172000 27351000 21821000 0 0 0 6779 1416 6931 24792;24793 37465;37466;37467;37468 37468 4 LCLQHEDLAK MPSVIRAHAIITLGKLCLQHEDLAKKSIPA ITLGKLCLQHEDLAKKSIPALVRELEVCED K L C A K K 1 0 0 1 1 1 1 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1225.6125 P42695;G3V1A9 P42695 930 939 NCAPD3 Condensin-2 complex subunit D3 yes no 2;3 0.0009119 85.862 4 0.81761 1.0366 1.7463 2 Median 0.81761 1.0366 1.7463 2 0 Median NaN NaN NaN 0 0 Median 26505000 18619000 7885300 26505000 18619000 7885300 0 0 0 6780 1338 6932 24794;24795;24796;24797 37469;37470;37471;37472;37473;37474 37474 6 LCNIFSTK DEKKVTGGRNGYGAKLCNIFSTKFTVETAS RNGYGAKLCNIFSTKFTVETASREYKKMFK K L C T K F 0 0 1 0 1 0 0 0 0 1 1 1 0 1 0 1 1 0 0 0 0 0 8 0 981.49535 P11388;Q71UH4;Q02880;B4DKD0;E9PCY5 P11388 169 176 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2 0.00010184 129.68 5 2 0.87659 1.1586 12.201 5 Median 0.88101 1.1621 9.7802 4 0 Median 0.61519 0.98645 NaN 1 0 Median 787760000 464620000 323140000 625300000 339770000 285530000 162460000 124850000 37608000 6781 1256;1437 6933 24798;24799;24800;24801;24802;24803;24804 37475;37476;37477;37478;37479;37480;37481;37482;37483;37484;37485;37486;37487;37488 37482 14 LCNLEEGSPGSGTYTR ______________________________ CNLEEGSPGSGTYTRHGYIFSSLAGCLMKS R L C T R H 0 1 1 0 1 0 2 3 0 0 2 0 0 0 1 2 2 0 1 0 0 0 16 0 1739.7785 R4GNH9;R4GMQ7;B1AMU7;B1AMU4;Q9Y3B2;B1AMU3 R4GNH9 14 29 EXOSC1 Exosome complex component CSL4 yes no 2 1.1686E-54 264.61 7 2 0.60459 0.8196 18.303 3 Plateau 0.61993 0.8203 NaN 1 0 Median 0.42432 0.6107 9.4635 2 0 Median 28129000 16621000 11508000 15047000 7768600 7278600 13082000 8852700 4229400 6782 675 6934 24805;24806;24807;24808;24809;24810;24811;24812;24813 37489;37490;37491;37492;37493;37494;37495;37496;37497;37498;37499;37500 37492 12 LCPVASCPDAR ASQLLTLDTTSIPLRLCPVASCPDARLLAG IPLRLCPVASCPDARLLAGCEGGCCCWDVR R L C A R L 2 1 0 1 2 0 0 0 0 0 1 0 0 0 2 1 0 0 0 1 0 0 11 0 1244.5642 A0A140VJD0;Q9UFC0;H7C5N7 A0A140VJD0 448 458 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes no 2 0.0052822 54.982 2 0.5425 0.73544 5.4064 2 Median 0.5425 0.73544 5.4064 2 0 Median NaN NaN NaN 0 0 Median 10942000 6244400 4697300 10942000 6244400 4697300 0 0 0 6783 493 6935 24814;24815 37501;37502;37503 37501 3 LCQGLFFR ATTVMLKEKLAELRKLCQGLFFRVEERKKW KLAELRKLCQGLFFRVEERKKWPERLSALD K L C F R V 0 1 0 0 1 1 0 1 0 0 2 0 0 2 0 0 0 0 0 0 0 0 8 0 1039.5273 B7Z766;A0A087X054;B7Z2N4;B3KXH0;Q9Y4L1;B7Z602 B7Z766 653 660 HYOU1 Hypoxia up-regulated protein 1 yes no 2 0.039015 50.039 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6784 369 6936 24816 37504 37504 1 LCQIFSDLNATYR KVANASYYRKFFETKLCQIFSDLNATYRTI TKLCQIFSDLNATYRTIQGHLQSENFKQRV K L C Y R T 1 1 1 1 1 1 0 0 0 1 2 0 0 1 0 1 1 0 1 0 0 0 13 0 1599.7715 O15042;E7ET15 O15042 623 635 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 2 0.030204 83.862 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6785 1175 6937 24817 37505 37505 1 LCSAHGVLVPGGFGVR TSQEEPVRYHEAWQKLCSAHGVLVPGGFGV CSAHGVLVPGGFGVRGTEGKIQAIAWARNQ K L C V R G 1 1 0 0 1 0 0 4 1 0 2 0 0 1 1 1 0 0 0 3 0 0 16 0 1624.8508 P17812;B4E1E0;B4DMB5 P17812 361 376 CTPS1 CTP synthase 1;CTP synthase yes no 3 0.0027363 30.133 1 0.37656 0.51236 NaN 1 Median 0.37656 0.51236 NaN 1 0 Median NaN NaN NaN 0 0 Median 9278300 6442000 2836300 9278300 6442000 2836300 0 0 0 6786 1278 6938 24818 37506 37506 1 LCSGVLGTVVHGK SIDGRRGLFTGLTPRLCSGVLGTVVHGKVL PRLCSGVLGTVVHGKVLQHYQESDKGEELG R L C G K V 0 0 0 0 1 0 0 3 1 0 2 1 0 0 0 1 1 0 0 3 0 0 13 0 1325.7126 Q9Y6C9;E9PIE4 Q9Y6C9 78 90 MTCH2 Mitochondrial carrier homolog 2 yes no 3 7.2376E-05 108.72 2 0.52864 0.67403 25.045 2 Median 0.52864 0.67403 25.045 2 0 Median NaN NaN NaN 0 0 Median 30040000 20390000 9649500 30040000 20390000 9649500 0 0 0 6787 1833 6939 24819;24820 37507;37508 37507 2 LCSISLSHINAYACLVCGK LDTINRSVLDFDFEKLCSISLSHINAYACL SLSHINAYACLVCGKYFQGRGLKSHAYIHS K L C G K Y 2 0 1 0 3 0 0 1 1 2 3 1 0 0 0 3 0 0 1 1 0 0 19 0 2165.0432 B9A018;Q53GS9;B7Z7L9;A0A087X1B2;F8WC91;C9JIU2 B9A018 123 141 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 3 0.0075573 47 1 1.0548 1.2967 NaN 1 Median 1.0548 1.2967 NaN 1 0 Median NaN NaN NaN 0 0 Median 1444200 785000 659180 1444200 785000 659180 0 0 0 6788 926 6940 24821 37509 37509 1 LCSSAETLESHPDIGK VREECIPMKRRRRAKLCSSAETLESHPDIG CSSAETLESHPDIGKSTPQKTAEADPRRGV K L C G K S 1 0 0 1 1 0 2 1 1 1 2 1 0 0 1 3 1 0 0 0 0 0 16 0 1742.8145 O96028;Q05CW4 O96028 405 420 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 3 2.7018E-05 76.156 2 1.1633 1.4447 23.81 2 Median 1.1633 1.4447 23.81 2 0 Median NaN NaN NaN 0 0 Median 34391000 15834000 18557000 34391000 15834000 18557000 0 0 0 6789 1228 6941 24822;24823 37510;37511;37512 37512 3 LCTLALHVLPNSSIGILATTR RKQVSQQRALAFIKRLCTLALHVLPNSSIG HVLPNSSIGILATTRILMHTFPKTDLLLDS R L C T R I 2 1 1 0 1 0 0 1 1 2 5 0 0 0 1 2 3 0 0 1 0 0 21 0 2249.2566 A8K905;Q8WTT2;B4DXL4 A8K905 630 650 NOC3L Nucleolar complex protein 3 homolog yes no 3 3.9706E-06 93.572 3 0.86175 1.1487 14.973 3 Median 0.86175 1.1487 14.973 3 0 Median NaN NaN NaN 0 0 Median 15683000 8594600 7088100 15683000 8594600 7088100 0 0 0 6790 643 6942 24824;24825;24826 37513;37514;37515;37516;37517 37513 5 LCTVNSVEEK RAHRIGQQNEVRVLRLCTVNSVEEKILAAA VRVLRLCTVNSVEEKILAAAKYKLNVDQKV R L C E K I 0 0 1 0 1 0 2 0 0 0 1 1 0 0 0 1 1 0 0 2 0 0 10 0 1177.5649 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;B4E0F1;B4DSI8;B3KNW7;P51531;A0A0U1RQZ9;F6VDE0;B4DK35;B4DSC8 A7E2E1 1204 1213 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 0.001562 83.647 2 0.7754 0.97715 66.394 2 Median 0.7754 0.97715 66.394 2 0 Median NaN NaN NaN 0 0 Median 20562000 11277000 9285000 20562000 11277000 9285000 0 0 0 6791 403;1362 6943 24827;24828 37518;37519;37520 37519 3 LCVVATNVAETSLTIPGIK EKQAQVFKPPPEGTRLCVVATNVAETSLTI ATNVAETSLTIPGIKYVVDCGKVKKRYYDR R L C I K Y 2 0 1 0 1 0 1 1 0 2 2 1 0 0 1 1 3 0 0 3 0 0 19 0 1985.0867 Q8IY37;F5H3Y4 Q8IY37 615 633 DHX37 Probable ATP-dependent RNA helicase DHX37 yes no 2 2.9508E-10 113.76 3 1.2757 1.6475 19.429 3 Median 1.2757 1.6475 19.429 3 0 Median NaN NaN NaN 0 0 Median 6637000 3042800 3594200 6637000 3042800 3594200 0 0 0 6792 1627 6944 24829;24830;24831 37521;37522;37523;37524;37525 37524 5 LCYNYPVIQNYYTSR GLLPEGIDDSVQLSRLCYNYPVIQNYYTSR LCYNYPVIQNYYTSRRQKFERLSRGKWNPD R L C S R R 0 1 2 0 1 1 0 0 0 1 1 0 0 0 1 1 1 0 4 1 0 0 15 0 1952.9091 Q8WYP5 Q8WYP5 692 706 AHCTF1 Protein ELYS yes yes 2 2.1212E-07 133.05 4 2 0.70698 0.94855 18.729 6 Median 0.75663 1.0428 10.139 4 0 Median 0.52646 0.7453 10.365 2 0 Median 55484000 32640000 22844000 33133000 18132000 15001000 22351000 14508000 7843500 6793 1670 6945 24832;24833;24834;24835;24836;24837 37526;37527;37528;37529;37530;37531;37532;37533;37534;37535;37536 37529 11 LCYVGYNIEQEQK NHSADFETVRMIKEKLCYVGYNIEQEQKLA EKLCYVGYNIEQEQKLALETTVLVESYTLP K L C Q K L 0 0 1 0 1 2 2 1 0 1 1 1 0 0 0 0 0 0 2 1 0 0 13 0 1642.7661 B4DWQ5;Q8IY98;F5H6T1;B4DHK9;P61160 B4DWQ5 165 177 ACTR2 Actin-related protein 2 yes no 2 3.308E-12 155.53 3 1.0688 1.3947 5.0726 3 Median 1.0688 1.3947 5.0726 3 0 Median NaN NaN NaN 0 0 Median 17799000 8362800 9436100 17799000 8362800 9436100 0 0 0 6794 808 6946 24838;24839;24840 37537;37538;37539;37540;37541;37542;37543 37538 7 LDAAAPQSLEFLR VVQPALEMPEQKCSKLDAAAPQSLEFLRTP SKLDAAAPQSLEFLRTPFGGRLLVLESFLY K L D L R T 3 1 0 1 0 1 1 0 0 0 3 0 0 1 1 1 0 0 0 0 0 0 13 0 1429.7565 Q4VC44 Q4VC44 106 118 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes yes 2 5.7532E-08 129.74 4 2 0.56667 0.78724 18.333 5 Median 0.60662 0.81298 2.0994 3 0 Median 0.37361 0.58112 6.9984 2 0 Median 81848000 58086000 23761000 34178000 21625000 12554000 47669000 36462000 11207000 6795 1536 6947 24841;24842;24843;24844;24845;24846 37544;37545;37546;37547;37548;37549;37550;37551;37552;37553 37548 10 LDADLLVPASVK NRGGRKPKRKMKTQKLDADLLVPASVKVLR TQKLDADLLVPASVKVLRRSNRKKIDDPID K L D V K V 2 0 0 2 0 0 0 0 0 0 3 1 0 0 1 1 0 0 0 2 0 0 12 0 1239.7075 Q8WWQ0;Q9NWP3 Q8WWQ0 1725 1736 PHIP PH-interacting protein yes no 2 1.4419E-07 117.52 3 2 0.89014 1.1601 8.0356 5 Median 0.93034 1.1601 2.0657 3 0 Plateau 0.829 1.3184 2.8814 2 0 Median 273930000 142570000 131360000 116820000 58903000 57915000 157120000 83671000 73446000 6796 1668 6948 24847;24848;24849;24850;24851 37554;37555;37556;37557;37558;37559;37560;37561;37562 37560 9 LDADPSLQR IREVTINQSLLAPLRLDADPSLQRVRQEES LLAPLRLDADPSLQRVRQEESEQIKTLNNK R L D Q R V 1 1 0 2 0 1 0 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 9 0 1013.5142 CON__P08729;CON__Q3KNV1;P08729;B3KY79 CON__Q3KNV1 78 86 KRT7 Keratin, type II cytoskeletal 7 no no 2 0.004097 93.143 2 1 1.1949 1.8042 84.539 3 Plateau 0.31071 0.41932 9.8758 2 0 Median 1.1949 1.8042 NaN 1 0 Median 34504000 21289000 13214000 17242000 12643000 4598800 17262000 8646300 8615700 + 6797 968;957 6949 24852;24853;24854 37563;37564;37565 37565 3 LDAEDVIGSR EGKGTKAFKQPAKRKLDAEDVIGSRRQPRA PAKRKLDAEDVIGSRRQPRAPKEKAQPLED K L D S R R 1 1 0 2 0 0 1 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1073.5353 P46013 P46013 2893 2902 MKI67 Antigen KI-67 yes yes 2 0.0014014 105.2 2 2 1.0131 1.6097 22.67 4 Linear 0.8026 1.0792 0.51337 2 0 Median 1.0077 1.5957 3.4977 2 0 Median 95389000 46720000 48669000 24908000 13074000 11834000 70481000 33646000 36835000 6798 1342 6950 24855;24856;24857;24858 37566;37567;37568;37569;37570;37571;37572;37573 37570 8 LDAEPRPPPTQEAA HKVNLQMVYDSPLCRLDAEPRPPPTQEAA_ RLDAEPRPPPTQEAA_______________ R L D A A - 3 1 0 1 0 1 2 0 0 0 1 0 0 0 4 0 1 0 0 0 0 0 14 1 1490.7365 Q6IBR2;K7ER00;Q9Y285 Q6IBR2 495 508 FARSLA;FARSA Phenylalanine--tRNA ligase alpha subunit yes no 2 0.0015055 68.069 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4715300 4715300 0 4715300 4715300 0 0 0 0 6799 1152 6951 24859;24860 37574;37575 37574 2 LDALSNFHFIPKPPVPEIK EHVEIQKMMDSLFLKLDALSNFHFIPKPPV SNFHFIPKPPVPEIKVVSNLPAITMEEVAP K L D I K V 1 0 1 1 0 0 1 0 1 2 2 2 0 2 4 1 0 0 0 1 0 0 19 1 2161.1936 B3KPV5;O00566 B3KPV5 507 525 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 3;4 1.0412E-06 77.795 7 4 0.96845 1.2291 17.656 11 Median 1.0141 1.246 15.618 7 0 Median 0.66563 1.0622 16.194 4 0 Median 468180000 253940000 214240000 270250000 135430000 134820000 197930000 118510000 79419000 6800 767 6952 24861;24862;24863;24864;24865;24866;24867;24868;24869;24870;24871 37576;37577;37578;37579;37580;37581;37582;37583;37584;37585;37586;37587;37588;37589;37590;37591;37592;37593;37594;37595;37596;37597 37592 22 LDDANDAGGRNSTECTLILTEGDSAK KCSAVKHNRIKGIPKLDDANDAGGRNSTEC STECTLILTEGDSAKTLAVSGLGVVGRDKY K L D A K T 3 1 2 4 1 0 2 3 0 1 3 1 0 0 0 2 3 0 0 0 0 0 26 1 2722.2352 P11388 P11388 441 466 TOP2A DNA topoisomerase 2-alpha yes yes 3 5.3968E-23 128.52 4 0.89175 1.1633 6.5423 4 Median 0.89175 1.1633 6.5423 4 0 Median NaN NaN NaN 0 0 Median 24750000 12231000 12519000 24750000 12231000 12519000 0 0 0 6801 1256 6953 24872;24873;24874;24875 37598;37599;37600;37601;37602;37603;37604;37605 37600 7 LDDDSDSPSFFEEKPEEPVVLALDPK RTYEQMEFPLLKKRKLDDDSDSPSFFEEKP EEKPEEPVVLALDPKGHEDDSYEARKSFLT K L D P K G 1 0 0 5 0 0 4 0 0 0 3 2 0 2 4 3 0 0 0 2 0 0 26 1 2917.3757 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 732 757 ADNP Activity-dependent neuroprotector homeobox protein yes no 3 0.026427 52.898 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 753420 753420 0 753420 753420 0 0 0 0 6802 729 6954 24876 37606 37606 1 LDDHALTGASDSR LDAHEDKVWGLHCSRLDDHALTGASDSRVI SRLDDHALTGASDSRVILWKDVTEAEQAEE R L D S R V 2 1 0 3 0 0 0 1 1 0 2 0 0 0 0 2 1 0 0 0 0 0 13 0 1356.627 Q12788;J3KNP2;A0JLS5 Q12788 616 628 TBL3 Transducin beta-like protein 3 yes no 2;3 1.8637E-10 135.99 5 4 0.74581 1.125 24.62 9 Median 0.88612 1.2185 32.999 5 0 Median 0.7058 1.1201 1.3942 4 0 Median 276860000 152210000 124650000 132540000 65561000 66976000 144320000 86646000 57675000 6803 1456 6955 24877;24878;24879;24880;24881;24882;24883;24884;24885 37607;37608;37609;37610;37611;37612;37613;37614;37615;37616;37617;37618;37619;37620;37621 37620 15 LDDIFEPVLIPEPK NGTVRCEMPELVQHKLDDIFEPVLIPEPKI KLDDIFEPVLIPEPKIRAVSPHFDDMHSNT K L D P K I 0 0 0 2 0 0 2 0 0 2 2 1 0 1 3 0 0 0 0 1 0 0 14 0 1623.876 Q14008;Q8IYN5;H0YCF6;H0YEK7 Q14008 1510 1523 CKAP5 Cytoskeleton-associated protein 5 yes no 2 0.0023105 62.466 2 1.0137 1.265 7.6905 2 Median 1.0137 1.265 7.6905 2 0 Median NaN NaN NaN 0 0 Median 10571000 3895500 6675400 10571000 3895500 6675400 0 0 0 6804 1481 6956 24886;24887 37622;37623;37624 37624 3 LDDIHPFYADLMNILYDK NYHDRLSQILTDFPKLDDIHPFYADLMNIL IHPFYADLMNILYDKDHYKLALGQINIAKN K L D D K D 1 0 1 4 0 0 0 0 1 2 3 1 1 1 1 0 0 0 2 0 0 0 18 0 2195.0609 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;O60747;Q5T3R7 Q53GS0 72 89 GTPBP4 Nucleolar GTP-binding protein 1 yes no 3 9.3989E-24 122.5 5 1 0.71625 0.91127 18.742 5 Median 0.73225 0.9195 15.682 4 0 Median 0.46253 0.69767 NaN 1 0 Median 78279000 39184000 39096000 60311000 27096000 33215000 17968000 12088000 5880300 6805 975 6957;6958 24888;24889;24890;24891;24892;24893 37625;37626;37627;37628;37629;37630;37631;37632;37633 37633 349 9 LDDLALLEDLEK DASDKEGMSPAKRTKLDDLALLEDLEKQRA RTKLDDLALLEDLEKQRALIKAELDNELME K L D E K Q 1 0 0 3 0 0 2 0 0 0 5 1 0 0 0 0 0 0 0 0 0 0 12 0 1385.729 B4DZQ5;A0A024QZY5;Q13523 B4DZQ5 86 97 PRPF4B Serine/threonine-protein kinase PRP4 homolog yes no 2 0.034253 90.108 1 1 0.5511 0.76157 6.0892 2 Median 0.61333 0.79508 NaN 1 0 Median 0.49519 0.72947 NaN 1 0 Median 10045000 6143200 3902200 2442400 1534000 908360 7603000 4609200 2993800 6806 24 6959 24894;24895 37634;37635 37634 1 LDDLFLESFEITDVK FILGFQVEDALALIRLDDLFLESFEITDVK LDDLFLESFEITDVKPLKGDHLSRAIGRIA R L D V K P 0 0 0 3 0 0 2 0 0 1 3 1 0 2 0 1 1 0 0 1 0 0 15 0 1782.8927 B2R823;Q9NRX1 B2R823 155 169 PNO1 RNA-binding protein PNO1 yes no 2 0.00018908 105.2 2 0.77276 1.0062 NaN 1 Median 0.77276 1.0062 NaN 1 0 Median NaN NaN NaN 0 0 Median 5188700 1153300 4035400 5188700 1153300 4035400 0 0 0 6807 713 6960 24896;24897 37636;37637 37637 1 LDDLFLESFEITDVKPLK FILGFQVEDALALIRLDDLFLESFEITDVK LFLESFEITDVKPLKGDHLSRAIGRIAGKG R L D L K G 0 0 0 3 0 0 2 0 0 1 4 2 0 2 1 1 1 0 0 1 0 0 18 1 2121.1245 B2R823;Q9NRX1 B2R823 155 172 PNO1 RNA-binding protein PNO1 yes no 3 0.01023 49.395 1 0.91365 1.1161 NaN 1 Median 0.91365 1.1161 NaN 1 0 Median NaN NaN NaN 0 0 Median 4346900 1784200 2562700 4346900 1784200 2562700 0 0 0 6808 713 6961 24898 37638 37638 1 LDDLFLK SAKALYEHLTAKNTKLDDLFLKRYASLLKY HLTAKNTKLDDLFLKRYASLLKYAGEPVPF K L D L K R 0 0 0 2 0 0 0 0 0 0 3 1 0 1 0 0 0 0 0 0 0 0 7 0 862.48002 E5KNY5;P42704 E5KNY5 1351 1357 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.023242 71.949 1 1 0.35031 0.44408 NaN 1 Median 0.35031 0.44408 NaN 1 0 Median NaN NaN NaN 0 0 Median 7722500 6205300 1517200 7722500 6205300 1517200 0 0 0 6809 1001 6962 24899;24900 37639;37640 37639 2 LDDLVSTGK VLENGVDIVVGTPGRLDDLVSTGKLNLSQV VGTPGRLDDLVSTGKLNLSQVRFLVLDEAD R L D G K L 0 0 0 2 0 0 0 1 0 0 2 1 0 0 0 1 1 0 0 1 0 0 9 0 946.49713 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 269 277 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.013017 87.308 1 1 0.81604 1.0629 NaN 1 Median 0.81604 1.0629 NaN 1 0 Median NaN NaN NaN 0 0 Median 16861000 6060300 10801000 9675000 6060300 3614700 7186400 0 7186400 6810 378 6963 24901;24902 37641;37642 37641 2 LDDLYQQK ESKRSVRTLKEEVQKLDDLYQQKIKEAEEE LKEEVQKLDDLYQQKIKEAEEEDEKCASEL K L D Q K I 0 0 0 2 0 2 0 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 8 0 1021.508 A8K031;O14777;Q05DQ6 A8K031 510 517 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 0.017654 60.682 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2500300 2500300 0 0 0 0 2500300 2500300 0 6811 574 6964 24903 37643 37643 1 LDDPSCPRPECYR NITIKLGYANAKIYKLDDPSCPRPECYRSC YKLDDPSCPRPECYRSCGSSTPDEFPTDIP K L D Y R S 0 2 0 2 2 0 1 0 0 0 1 0 0 0 3 1 0 0 1 0 0 0 13 1 1663.7083 P41091;H7BZU1 P41091 91 103 EIF2S3 Eukaryotic translation initiation factor 2 subunit 3 yes no 3 0.04517 22.321 2 0.38411 0.50653 6.9746 2 Median 0.38411 0.50653 6.9746 2 0 Median NaN NaN NaN 0 0 Median 20330000 12271000 8059500 20330000 12271000 8059500 0 0 0 6812 1333 6965 24904;24905 37644;37645 37645 2 LDDTYSFQVINK NIMSIFTFMGANVMRLDDTYSFQVINKTVK VMRLDDTYSFQVINKTVKMVIPALIQSDSG R L D N K T 0 0 1 2 0 1 0 0 0 1 1 1 0 1 0 1 1 0 1 1 0 0 12 0 1441.7089 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8;Q8N7L7 B2RWN5 1337 1348 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 8.0018E-08 157.66 4 0.84135 1.0526 4.8576 4 Median 0.84135 1.0526 4.8576 4 0 Median NaN NaN NaN 0 0 Median 89719000 48659000 41060000 89719000 48659000 41060000 0 0 0 6813 748 6966 24906;24907;24908;24909 37646;37647;37648;37649;37650;37651 37650 6 LDEILK PKKTTDTASVQNEAKLDEILKEIKSIKDTI TASVQNEAKLDEILKEIKSIKDTICNQDER K L D L K E 0 0 0 1 0 0 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 6 0 729.42726 B4DMH3;Q53G58;B3KN06;A0A024RBI5;Q59EA2;Q9ULV4;B7Z9V0;B4E3S0;H0YHL7 B4DMH3 404 409 CORO1C Coronin;Coronin-1C yes no 2 0.03729 80.555 1 1.3264 1.648 NaN 1 Median 1.3264 1.648 NaN 1 0 Median NaN NaN NaN 0 0 Median 44656000 18882000 25773000 44656000 18882000 25773000 0 0 0 6814 274 6967 24910 37652 37652 1 LDELRGQDEGK NYRQLLERLQARQSRLDELRGQDEGKAQEL RQSRLDELRGQDEGKAQELEAKMKWTNLLY R L D G K A 0 1 0 2 0 1 2 2 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1258.6153 B3KNS8;O75683 B3KNS8 250 260 SURF6 Surfeit locus protein 6 yes no 2 0.017843 55.721 1 0.83972 1.0833 NaN 1 Median 0.83972 1.0833 NaN 1 0 Median NaN NaN NaN 0 0 Median 4602900 2509600 2093300 4602900 2509600 2093300 0 0 0 6815 760 6968 24911 37653;37654 37653 2 LDELYGTWR HVGRFCIWTESAFRKLDELYGTWRKAASLK ESAFRKLDELYGTWRKAASLKSNYNLPMHK K L D W R K 0 1 0 1 0 0 1 1 0 0 2 0 0 0 0 0 1 1 1 0 0 0 9 0 1151.5611 P36578;Q59GY2;H3BM89;B4DMJ6;Q53G74;B4DMJ2 P36578 260 268 RPL4 60S ribosomal protein L4 yes no 2 0.017101 57.96 2 0.65416 0.87527 NaN 1 Median NaN NaN NaN 0 0 Median 0.65416 0.87527 NaN 1 0 Median 6880900 3086300 3794600 0 0 0 6880900 3086300 3794600 6816 1325 6969 24912;24913 37655;37656 37655 2 LDFLEGDQK MMNAIKKYQKGFSDKLDFLEGDQKPLAQRK KGFSDKLDFLEGDQKPLAQRKKAGAKGQQM K L D Q K P 0 0 0 2 0 1 1 1 0 0 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1063.5186 Q6IB29;H7C2Q8;Q99848 Q6IB29 210 218 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 0.0017674 115.49 5 2 0.84256 1.2072 2.5123 4 Median 0.98034 1.2287 1.978 2 0 Median 0.74392 1.1873 1.8171 2 0 Median 136670000 75349000 61318000 52836000 27533000 25303000 83830000 47815000 36015000 6817 1123 6970 24914;24915;24916;24917;24918;24919;24920 37657;37658;37659;37660;37661;37662;37663;37664 37662 7 LDFNTDEEK FSKKDCEAYALQMTKLDFNTDEEKKMVEEV ALQMTKLDFNTDEEKKMVEEVFSNAIDCLS K L D E K K 0 0 1 2 0 0 2 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 9 0 1109.4877 P42285;A8K6I4;B4E3M6 P42285 409 417 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 0.0023184 120.87 3 0.65858 0.83289 9.778 2 Median 0.65858 0.83289 9.778 2 0 Median NaN NaN NaN 0 0 Median 22937000 15299000 7638600 22937000 15299000 7638600 0 0 0 6818 1336 6971 24921;24922;24923 37665;37666;37667;37668 37665 4 LDFSTGNFNVLAVR VLTVGFGLARAENQKLDFSTGNFNVLAVRI KLDFSTGNFNVLAVRIAVLASICVTQAFMM K L D V R I 1 1 2 1 0 0 0 1 0 0 2 0 0 2 0 1 1 0 0 2 0 0 14 0 1551.8045 G3XAN4;Q6FHL3;A8K032;Q15629;Q6FHU7 G3XAN4 198 211 TRAM1 Translocating chain-associated membrane protein;Translocating chain-associated membrane protein 1 yes no 2 4.9548E-34 205.13 4 0.58786 0.79839 14.267 3 Median 0.58786 0.79839 14.267 3 0 Median NaN NaN NaN 0 0 Median 41073000 22055000 19017000 41073000 22055000 19017000 0 0 0 6819 575 6972 24924;24925;24926;24927 37669;37670;37671;37672;37673;37674;37675 37670 7 LDFVCSFLQK TEEGQQILKQPVSERLDFVCSFLQKNRKHP PVSERLDFVCSFLQKNRKHPSSPECLVSAQ R L D Q K N 0 0 0 1 1 1 0 0 0 0 2 1 0 2 0 1 0 0 0 1 0 0 10 0 1255.6271 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;F5H0Z7;F5H763;Q86XH4;G1UI36;F5H2F3;F5H3L6;F5GZW1;F5H1L0;F8W6T3;F5GWK2;F5H073;F5H068;A8K394;Q4LE64;Q14980 Q4LE64 61 70 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 3.0136E-05 128.36 3 2 0.65453 0.83813 48.949 5 Median 0.75122 0.95491 7.4816 3 0 Plateau 0.25235 0.37716 8.8813 2 0 Median 52568000 33324000 19244000 34544000 19287000 15256000 18024000 14037000 3987500 6820 148;1499;590 6973 24928;24929;24930;24931;24932 37676;37677;37678;37679;37680;37681;37682;37683 37678 8 LDGDVLMK KNAPKEASRLKSILKLDGDVLMKDVQEIAT RLKSILKLDGDVLMKDVQEIATVVVPKPKH K L D M K D 0 0 0 2 0 0 0 1 0 0 2 1 1 0 0 0 0 0 0 1 0 0 8 0 889.4579 A0A024RB76;Q9BRT6 A0A024RB76 35 42 C12orf31;LLPH Protein LLP homolog yes no 2 0.01236 55.531 1 0.35211 0.53292 NaN 1 Median NaN NaN NaN 0 0 Median 0.35211 0.53292 NaN 1 0 Median 14593000 10423000 4170700 0 0 0 14593000 10423000 4170700 6821 263 6974 24933 37684;37685 37685 108 2 LDGLLER FHLRTSYKKKTKSSKLDGLLERRIKQFTLE KKKTKSSKLDGLLERRIKQFTLEEKQRLEK K L D E R R 0 1 0 1 0 0 1 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 7 0 814.45487 E7ETD6;Q12830;F5GXF5 E7ETD6 1047 1053 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.010841 111.04 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6822 1015 6975 24934 37686 37686 1 LDGLVETPTGYIESLPR ______________________________ GLVETPTGYIESLPRVVKRRVNALKNLQVK R L D P R V 0 1 0 1 0 0 2 2 0 1 3 0 0 0 2 1 2 0 1 1 0 0 17 0 1858.9676 F8W118;F8VY35;F8VV59;A0A024RBE6;F5H4R6;H0YIV4;A0A024RBB7;P55209;F8VRJ2;H0YHC3;F8W020;F8VXI6;F8VUX1;B7Z9C2;F8W0J6;B7Z2V4;B7Z5H0 F8W118 15 31 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 2 5.4777E-43 201.04 5 2 0.83716 1.1574 22.072 6 Median 0.84531 1.1729 0.60357 4 0 Linear 0.46214 0.76071 5.42 2 0 Median 861110000 513590000 347520000 520700000 280120000 240580000 340410000 233470000 106950000 6823 267 6976 24935;24936;24937;24938;24939;24940;24941 37687;37688;37689;37690;37691;37692;37693;37694;37695;37696;37697;37698;37699;37700;37701 37688 15 LDGNELDLSLSDLNEVPVK ______________________________ ELDLSLSDLNEVPVKELAALPKATILDLSC K L D V K E 0 0 2 3 0 0 2 1 0 0 5 1 0 0 1 2 0 0 0 2 0 0 19 0 2069.0528 Q96AG4;I3L223 Q96AG4 15 33 LRRC59 Leucine-rich repeat-containing protein 59 yes no 2 1.4987E-83 233.28 4 2 0.52674 0.65662 44.582 6 Median 0.51028 0.6412 3.928 4 0 Median 0.94548 1.5069 2.3671 2 0 Median 226800000 130840000 95959000 117410000 76450000 40956000 109390000 54388000 55003000 6824 1681 6977 24942;24943;24944;24945;24946;24947 37702;37703;37704;37705;37706;37707;37708;37709;37710;37711;37712;37713 37704 12 LDGQTPHDERQDSINAYNEPNSTK ILEDYCMWRNYEYCRLDGQTPHDERQDSIN RQDSINAYNEPNSTKFVFMLSTRAGGLGIN R L D T K F 1 1 3 3 0 2 2 1 1 1 1 1 0 0 2 2 2 0 1 0 0 0 24 1 2728.2325 O60264;B7ZAX9;B4DZC0;Q4W5H1 O60264 529 552 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 3;4 1.8456E-40 158.53 8 1.9903 2.61 13.11 8 Median 1.9903 2.61 13.11 8 0 Median NaN NaN NaN 0 0 Median 357430000 113630000 243800000 357430000 113630000 243800000 0 0 0 6825 1189 6978 24948;24949;24950;24951;24952;24953;24954;24955 37714;37715;37716;37717;37718;37719;37720;37721;37722;37723;37724;37725;37726;37727 37719 14 LDHIIK WNTVERLKDNKPNYKLDHIIKERYPTFIDA LKDNKPNYKLDHIIKERYPTFIDALRDLDD K L D I K E 0 0 0 1 0 0 0 0 1 2 1 1 0 0 0 0 0 0 0 0 0 0 6 0 737.44357 B5MCF9;B2RDF2;O00541 B5MCF9 116 121 PES1 Pescadillo homolog yes no 2 0.019651 137.5 3 0.86332 1.1026 34.338 3 Median 0.86332 1.1026 34.338 3 0 Median NaN NaN NaN 0 0 Median 91412000 51957000 39455000 91412000 51957000 39455000 0 0 0 6826 735 6979 24956;24957;24958 37728;37729;37730 37728 3 LDHYAIIK RQPKYPRKSAPRRNKLDHYAIIKFPLTTES SAPRRNKLDHYAIIKFPLTTESAMKKIEDN K L D I K F 1 0 0 1 0 0 0 0 1 2 1 1 0 0 0 0 0 0 1 0 0 0 8 0 971.54402 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;Q53RC5 H7BY10 73 80 RPL23A;DKFZp547I014 60S ribosomal protein L23a yes no 2 0.00012132 150.17 7 6 0.78958 1.0614 28.216 9 Median 0.95886 1.2673 11.037 5 0 Median 0.5012 0.7923 20.42 4 0 Median 4434200000 2179900000 2254300000 4136700000 1980000000 2156700000 297470000 199860000 97610000 6827 658 6980 24959;24960;24961;24962;24963;24964;24965;24966;24967;24968;24969;24970;24971 37731;37732;37733;37734;37735;37736;37737;37738;37739;37740;37741;37742;37743;37744;37745;37746;37747;37748;37749;37750;37751;37752;37753;37754;37755;37756;37757;37758 37735 28 LDIDSPPITAR LHAAMADTFLEHMCRLDIDSPPITARNTGI HMCRLDIDSPPITARNTGIICTIGPASRSV R L D A R N 1 1 0 2 0 0 0 0 0 2 1 0 0 0 2 1 1 0 0 0 0 0 11 0 1196.6401 V9HWB8;P14618;B4DNK4;H3BTN5;A0A024R5Z9;B4DRT3;A0A024R609;H3BQ34;H3BT25;H3BUW1;H3BTJ2;H3BU13;H3BN34;H3BQZ3 V9HWB8 33 43 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 2 7.3252E-06 122.94 2 2 0.83967 1.1186 117.89 3 Median 0.77545 1.0402 10.286 2 0 Median 5.1989 7.984 NaN 1 0 Median 78679000 26402000 52278000 42719000 23781000 18939000 35960000 2621100 33339000 6828 1267 6981 24972;24973;24974;24975 37759;37760;37761;37762;37763;37764 37761 6 LDILELLEK QSAQTPIAVIGLTCRLDILELLEKRVKSRF IGLTCRLDILELLEKRVKSRFSHRQIHLMN R L D E K R 0 0 0 1 0 0 2 0 0 1 4 1 0 0 0 0 0 0 0 0 0 0 9 0 1084.638 A8K7H4;O43929;Q53TH5;Q96B14;B7Z2M4;CON__Q2YDI2 A8K7H4 196 204 ORC4;ORC4L Origin recognition complex subunit 4 yes no 2 4.5953E-06 144.09 6 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8603900 7695500 908470 8603900 7695500 908470 0 0 0 + 6829 636 6982 24976;24977;24978;24979;24980;24981 37765;37766;37767;37768;37769;37770;37771 37767 7 LDINLLDNVVNCLYHGEGAQQR LADHAARQLLDFSQKLDINLLDNVVNCLYH NVVNCLYHGEGAQQRMAQEVLTHLKEHPDA K L D Q R M 1 1 3 2 1 2 1 2 1 1 4 0 0 0 0 0 0 0 1 2 0 0 22 0 2540.2442 O14980;C9IZS4;C9JQ02;C9JV99;C9J673;C9JKM9;C9JF49;C9IYM2;F8WF71 O14980 23 44 XPO1 Exportin-1 yes no 3 0.034035 32.695 1 0.53469 0.74445 NaN 1 Median 0.53469 0.74445 NaN 1 0 Median NaN NaN NaN 0 0 Median 3304600 2103200 1201400 3304600 2103200 1201400 0 0 0 6830 1174 6983 24982 37772 37772 1 LDLAGR VPIYEGYALPHAILRLDLAGRDLTDYLMKI YALPHAILRLDLAGRDLTDYLMKILTERGY R L D G R D 1 1 0 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 6 0 643.36532 B7Z6P1;P68133;P68032;A8K3K1;D2JYH4;P63267;P62736;B3KW67;Q13707;B4DUI8;K4EQ44;K4EP00;K4ENJ5;G8FSY7;Q562X7;Q562X4;Q562X2;Q562X1;Q562T6;Q562T5;Q562T4;Q562T3;Q562T0;Q562R6;Q562R0;Q562Q9;Q562Q8;Q562Q6;Q562Q4;Q562Q0;Q562L3;Q562W9;Q562S2;Q562R4;Q562Q5;Q562Q3;Q562Q1;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;B3KUD3;Q6S8J3;A5A3E0;P0CG38;P0CG39;L0R5C4;Q9BYX7;Q562Z7;Q562X9;Q562S0;Q562N0;Q562L5;A0AUL6;Q562U2;Q562N6;Q562Y8;Q562N2;Q562M5;Q562M3;Q562R8;Q562P0;Q562L9;Q562Z6;Q562Z4;Q562V5;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;Q562R1;V9HVZ7 Q53GK6 178 183 ACTA1;ACTC1;ACTA2;ACTG2;ACTB;ACT;PS1TP5BP1;ACTG1;POTEE;POTEF;POTEI;POTEJ;POTEM;POTEKP;ACTBL2;HEL-176 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Beta-actin-like protein 2 no no 2 0.0024101 148.62 4 1 0.724 0.99556 70.048 5 Median 0.71999 0.99141 2.6389 4 0 Median 2.9439 4.7884 NaN 1 0 Median 1219600000 638730000 580880000 1051200000 596020000 455220000 168370000 42705000 125670000 6831 1388;1420;914;1859;1547 6984 24983;24984;24985;24986;24987 37773;37774;37775;37776;37777 37776 5 LDLAGRDLTDYLMK VPIYEGYALPHAILRLDLAGRDLTDYLMKI RLDLAGRDLTDYLMKILTERGYSFTTTAER R L D M K I 1 1 0 3 0 0 0 1 0 0 4 1 1 0 0 0 1 0 1 0 0 0 14 1 1622.8338 B7Z6P1;P68133;P68032;A8K3K1;D2JYH4;P63267;P62736;B3KW67;Q13707;B4DUI8;K4EQ44;K4EP00;K4ENJ5;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;B3KUD3;A0AUL6;P63261;B4E3A4;I3L3I0;I3L1U9;I3L4N8;Q562R1;V9HVZ7 Q53GK6 178 191 ACTA1;ACTC1;ACTA2;ACTG2;PS1TP5BP1;ACTB;ACTG1;ACTBL2;HEL-176 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Beta-actin-like protein 2 no no 3 0.00098327 44.511 1 0.95095 1.2421 NaN 1 Median 0.95095 1.2421 NaN 1 0 Median NaN NaN NaN 0 0 Median 11653000 6209600 5443300 11653000 6209600 5443300 0 0 0 6832 1388;1420;914;1859;1547 6985 24988 37778 37778 1 LDLAGTLPGSK DEKDIKAFMGTPVQKLDLAGTLPGSKRQLQ PVQKLDLAGTLPGSKRQLQTPKEKAQALED K L D S K R 1 0 0 1 0 0 0 2 0 0 3 1 0 0 1 1 1 0 0 0 0 0 11 0 1070.5972 P46013 P46013 1198 1208 MKI67 Antigen KI-67 yes yes 2 4.9553E-09 156.83 6 2 0.98973 1.2884 17.105 5 Median 0.93622 1.2354 3.8396 3 0 Median 1.0666 1.6856 0.55046 2 0 Median 782620000 366470000 416150000 461100000 212820000 248280000 321510000 153640000 167870000 6833 1342 6986 24989;24990;24991;24992;24993;24994;24995;24996 37779;37780;37781;37782;37783;37784;37785;37786;37787;37788;37789;37790;37791;37792;37793 37779 15 LDLDLTADSQPPVFK VSGLMRKVPRVSLERLDLDLTADSQPPVFK LDLDLTADSQPPVFKVFPGSTTEDYNLIVI R L D F K V 1 0 0 3 0 1 0 0 0 0 3 1 0 1 2 1 1 0 0 1 0 0 15 0 1657.8563 B2R8R5;Q13263;M0R0K9 B2R8R5 493 507 TRIM28 Transcription intermediary factor 1-beta yes no 2 4.7002E-23 162.68 3 0.35149 0.43844 17.63 3 Median 0.35149 0.43844 17.63 3 0 Median NaN NaN NaN 0 0 Median 77389000 57539000 19850000 77389000 57539000 19850000 0 0 0 6834 716 6987 24997;24998;24999 37794;37795;37796;37797;37798;37799 37798 6 LDLGEDYPSGK ______________________________ KRHRLDLGEDYPSGKKRAGTDGKDRDRDRD R L D G K K 0 0 0 2 0 0 1 2 0 0 2 1 0 0 1 1 0 0 1 0 0 0 11 0 1192.5612 O43143;B4E0S6 O43143 7 17 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 0.00022043 94.692 4 1 0.73895 0.9396 23.093 5 Median 0.71606 0.90831 4.7815 4 0 Median 0.99653 1.5135 NaN 1 0 Median 54928000 33615000 21313000 44466000 27817000 16649000 10462000 5797900 4664200 6835 1180 6988 25000;25001;25002;25003;25004 37800;37801;37802;37803;37804;37805;37806;37807;37808 37806 9 LDLLGNLPGSK EEKDINTFVGTPVEKLDLLGNLPGSKRRPQ PVEKLDLLGNLPGSKRRPQTPKEKAKALED K L D S K R 0 0 1 1 0 0 0 2 0 0 4 1 0 0 1 1 0 0 0 0 0 0 11 0 1125.6394 P46013 P46013 1928 1938 MKI67 Antigen KI-67 yes no 2 2.5777E-09 161.51 6 2 0.9599 1.2951 14.919 8 Median 0.94033 1.2486 15.066 6 0 Median 0.98813 1.5541 0.71745 2 0 Median 2342900000 1186000000 1156900000 1400200000 708830000 691370000 942720000 477180000 465540000 6836 1342 6989 25005;25006;25007;25008;25009;25010;25011;25012 37809;37810;37811;37812;37813;37814;37815;37816;37817;37818;37819;37820;37821;37822;37823;37824;37825;37826 37809 18 LDLPGNLPGSK DEKDMKAFMGTPVQKLDLPGNLPGSKRWPQ PVQKLDLPGNLPGSKRWPQTPKEKAQALED K L D S K R 0 0 1 1 0 0 0 2 0 0 3 1 0 0 2 1 0 0 0 0 0 0 11 0 1109.6081 P46013 P46013 2290 2300 MKI67 Antigen KI-67 yes yes 2 4.2687E-07 146.11 3 2 0.9527 1.2592 15.433 5 Median 0.9527 1.2592 3.979 3 0 Plateau 1.0269 1.6205 0.45133 2 0 Median 1198500000 591350000 607150000 737290000 361800000 375490000 461220000 229550000 231660000 6837 1342 6990 25013;25014;25015;25016;25017 37827;37828;37829;37830;37831;37832;37833;37834;37835;37836 37828 10 LDLQQGQNLLQGLSK CKENGGYTGCPFPAKLDLQQGQNLLQGLSK LDLQQGQNLLQGLSKLSPSTSGPHSHDYLP K L D S K L 0 0 1 1 0 4 0 2 0 0 5 1 0 0 0 1 0 0 0 0 0 0 15 0 1653.905 B7Z700;Q5JR04;Q9HCE1;B3KQ43 B7Z700 891 905 MOV10 Putative helicase MOV-10 yes no 2 0.0017098 86.262 3 1.218 1.5887 22.648 3 Median 1.218 1.5887 22.648 3 0 Median NaN NaN NaN 0 0 Median 9645100 4653900 4991200 9645100 4653900 4991200 0 0 0 6838 916 6991 25018;25019;25020 37837;37838;37839 37837 1 LDLSHCSHLTDQSSNLLTAVGSSTR ATLRLIIRHMPLLSRLDLSHCSHLTDQSSN DQSSNLLTAVGSSTRYSLTELNMAGCNKLT R L D T R Y 1 1 1 2 1 1 0 1 2 0 5 0 0 0 0 6 3 0 0 1 0 0 25 0 2698.2981 I3VM54;I3VM53;Q9Y2K7 I3VM54 1052 1076 KDM2A Lysine-specific demethylase 2A yes no 4 0.017269 18.904 1 0.63783 0.88293 NaN 1 Median 0.63783 0.88293 NaN 1 0 Median NaN NaN NaN 0 0 Median 11405000 5876100 5529300 11405000 5876100 5529300 0 0 0 6839 1128 6992 25021 37840 37840 1 LDLSVTEAVVAGIAK GAEPLFFLDYFSCGKLDLSVTEAVVAGIAK LDLSVTEAVVAGIAKACGKAGCALLGGETA K L D A K A 3 0 0 1 0 0 1 1 0 1 2 1 0 0 0 1 1 0 0 3 0 0 15 0 1484.845 Q3B7A7;Q59HH3;P22102;B4DJ93;Q71VH3 Q3B7A7 543 557 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 3.3057E-10 131.42 4 0.28031 0.35379 4.7953 3 Median 0.28031 0.35379 4.7953 3 0 Median NaN NaN NaN 0 0 Median 36013000 28538000 7475000 36013000 28538000 7475000 0 0 0 6840 1289 6993 25022;25023;25024;25025 37841;37842;37843;37844;37845;37846;37847;37848;37849 37845 9 LDLSVVENGGLK LLQGLKAIGSKDDGKLDLSVVENGGLKAKT DGKLDLSVVENGGLKAKTITKKRKKEIEES K L D L K A 0 0 1 1 0 0 1 2 0 0 3 1 0 0 0 1 0 0 0 2 0 0 12 0 1242.682 A8K245;Q99986;H0YJ50;H0YJJ9 A8K245 339 350 VRK1 Serine/threonine-protein kinase VRK1 yes no 2 0.039515 33.875 1 0.51258 0.77972 NaN 1 Median NaN NaN NaN 0 0 Median 0.51258 0.77972 NaN 1 0 Median 11861000 7306600 4554300 0 0 0 11861000 7306600 4554300 6841 582 6994 25026 37850 37850 1 LDLTENLTGSK EEKDIIIFVGTPVQKLDLTENLTGSKRRPQ PVQKLDLTENLTGSKRRPQTPKEEAQALED K L D S K R 0 0 1 1 0 0 1 1 0 0 3 1 0 0 0 1 2 0 0 0 0 0 11 0 1189.619 P46013 P46013 1320 1330 MKI67 Antigen KI-67 yes no 2 3.229E-22 169.93 4 0.90814 1.1815 2.1299 3 Median 0.90814 1.1815 2.1299 3 0 Median NaN NaN NaN 0 0 Median 264450000 157950000 106500000 264450000 157950000 106500000 0 0 0 6842 1342 6995 25027;25028;25029;25030 37851;37852;37853;37854;37855;37856 37855 5 LDNASAFQGAVISPHYDSLLVK GRIEVFRSGEGMGIRLDNASAFQGAVISPH QGAVISPHYDSLLVKVIAHGKDHPTAATKM R L D V K V 3 0 1 2 0 1 0 1 1 1 3 1 0 1 1 3 0 0 1 2 0 0 22 0 2344.2063 A0A024R5C5;P11498;E9PRE7 A0A024R5C5 407 428 PC Pyruvate carboxylase;Pyruvate carboxylase, mitochondrial yes no 3 1.0109E-08 114.75 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12771000 12771000 0 12771000 12771000 0 0 0 0 6843 139 6996 25031;25032 37857;37858 37857 2 LDNLLLDTEGFVK LQYLHEHKIVYRDLKLDNLLLDTEGFVKIA LKLDNLLLDTEGFVKIADFGLCKEGMGYGD K L D V K I 0 0 1 2 0 0 1 1 0 0 4 1 0 1 0 0 1 0 0 1 0 0 13 0 1475.7872 Q16513 Q16513 785 797 PKN2 Serine/threonine-protein kinase N2 yes yes 2 0.0052668 109.39 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4659600 4659600 0 4659600 4659600 0 0 0 0 6844 1519 6997 25033;25034 37859;37860 37860 2 LDNVPHTPSSYIETLPK QVMQNPRVLAALQERLDNVPHTPSSYIETL NVPHTPSSYIETLPKAVKRRINALKQLQVR R L D P K A 0 0 1 1 0 0 1 0 1 1 2 1 0 0 3 2 2 0 1 1 0 0 17 0 1909.9785 E9PNW0;E9PJJ2;E9PS34;E9PNJ7;C9J6D1;A0A024RCC9;B7ZAK9;B7ZB83;B4DS05;Q99733;A8MXH2;E9PKI2;E9PP22 E9PNW0 45 61 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 3 0.0096735 51.535 2 0.58671 0.74595 9.6415 2 Median 0.58671 0.74595 9.6415 2 0 Median NaN NaN NaN 0 0 Median 14798000 10039000 4759800 14798000 10039000 4759800 0 0 0 6845 293 6998 25035;25036 37861;37862;37863 37861 3 LDPAASVTGSK EDKSINAFRETAKQKLDPAASVTGSKRHPK AKQKLDPAASVTGSKRHPKTKEKAQPLEDL K L D S K R 2 0 0 1 0 0 0 1 0 0 1 1 0 0 1 2 1 0 0 1 0 0 11 0 1044.5451 P46013 P46013 1442 1452 MKI67 Antigen KI-67 yes no 2 0.00074811 102.06 6 2 0.96426 1.2569 17.767 5 Median 0.95766 1.2555 9.5738 3 0 Median 1.0172 1.6043 0.17765 2 0 Median 988870000 484690000 504180000 487140000 236130000 251010000 501730000 248560000 253170000 6846 1342 6999 25037;25038;25039;25040;25041;25042;25043;25044 37864;37865;37866;37867;37868;37869;37870;37871;37872;37873 37868 9 LDPGLALGPGER CGAPLSLVDLAGSERLDPGLALGPGERERL SERLDPGLALGPGERERLRETQAINSSLST R L D E R E 1 1 0 1 0 0 1 3 0 0 3 0 0 0 2 0 0 0 0 0 0 0 12 0 1193.6404 A0A024RCS7;Q9BW19;B4DMA8;B4E063;A0A087X1W5 A0A024RCS7 572 583 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 0.0070985 47.559 1 0.63468 0.86709 NaN 1 Median 0.63468 0.86709 NaN 1 0 Median NaN NaN NaN 0 0 Median 9579500 6889800 2689700 9579500 6889800 2689700 0 0 0 6847 303 7000 25045 37874 37874 1 LDPGSEETQTLVR SPDWQVDYESYTWRKLDPGSEETQTLVREY RKLDPGSEETQTLVREYFSWEGAFQHVGKA K L D V R E 0 1 0 1 0 1 2 1 0 0 2 0 0 0 1 1 2 0 0 1 0 0 13 0 1443.7205 Q53YD7;P26641;B4DUP0 Q53YD7 402 414 EEF1G Elongation factor 1-gamma yes no 2 0.00015632 113.67 3 0.21376 0.2953 9.929 2 Median 0.21376 0.2953 9.929 2 0 Median NaN NaN NaN 0 0 Median 16086000 13924000 2161900 16086000 13924000 2161900 0 0 0 6848 1299 7001 25046;25047;25048 37875;37876;37877 37875 3 LDPHLVLDQLR FVRCIIPNHEKKAGKLDPHLVLDQLRCNGV KAGKLDPHLVLDQLRCNGVLEGIRICRQGF K L D L R C 0 1 0 2 0 1 0 0 1 0 4 0 0 0 1 0 0 0 0 1 0 0 11 0 1317.7405 A0A024R1N1;P35579;Q86XU5;B4E3S1;A0A0U4BW16;P35580 A0A024R1N1 683 693 MYH9;MYH10 Myosin-9;Myosin-10 no no 2;3 0.0011068 89.561 5 2 0.94774 1.3075 77.239 7 Median 0.94093 1.2957 4.3605 5 0 Median 3.9997 6.2122 11.801 2 0 Median 330650000 153240000 177410000 283110000 144260000 138850000 47539000 8972300 38567000 6849 61;490;1320 7002 25049;25050;25051;25052;25053;25054;25055 37878;37879;37880;37881;37882;37883;37884;37885;37886;37887;37888;37889;37890;37891 37883 13 LDPHPELLPELGSLPPVNT HSAEAIALEQSRLARLDPHPELLPELGSLP PELLPELGSLPPVNT_______________ R L D N T - 0 0 1 1 0 0 2 1 1 0 5 0 0 0 5 1 1 0 0 1 0 0 19 0 2037.0783 Q59FM7;A0A0G2JIS2;A0A024RCN9;B7Z852;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7;A0A0G2JRR0;A0A0G2JRN8 Q59FM7 1013 1031 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 2 0.0034036 73.273 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7415200 0 0 7415200 0 0 0 0 0 6850 298 7003 25056;25057;25058 37892;37893;37894 37894 3 LDPSIFESLQK VIIGLKTAKGTKQLKLDPSIFESLQKERVE KQLKLDPSIFESLQKERVEAGDVIYIEANS K L D Q K E 0 0 0 1 0 1 1 0 0 1 2 1 0 1 1 2 0 0 0 0 0 0 11 0 1275.6711 B5BUB1;Q9Y265;E7ETR0;B3KRS7 B5BUB1 172 182 RUVBL1 RuvB-like 1 yes no 2 7.0623E-06 120.27 4 2 0.57378 0.73118 38.896 6 Median 0.54366 0.68561 11.429 4 0 Median 0.87359 1.3861 8.4289 2 0 Median 215060000 125460000 89599000 132000000 85567000 46429000 83063000 39893000 43170000 6851 896 7004 25059;25060;25061;25062;25063;25064 37895;37896;37897;37898;37899;37900;37901;37902 37898 8 LDPSPQTIYK FPLLKLEKELLKQIKLDPSPQTIYKWIKDN LKQIKLDPSPQTIYKWIKDNISPKLHVDKG K L D Y K W 0 0 0 1 0 1 0 0 0 1 1 1 0 0 2 1 1 0 1 0 0 0 10 0 1160.6077 D3DQV9;Q59G42;B4DZF2;P78344;H0Y3P2;Q2TU89;Q3LIE0 D3DQV9 743 752 EIF4G2;AAG1;Nbla00315 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.016635 76.1 2 0.31249 0.39209 8.0129 2 Median 0.31249 0.39209 8.0129 2 0 Median NaN NaN NaN 0 0 Median 12794000 10092000 2701900 12794000 10092000 2701900 0 0 0 6852 877 7005 25065;25066 37903;37904 37904 2 LDPVEQGQEDTVAPEVAAEK SRTAVDGFQSESPEKLDPVEQGQEDTVAPE QGQEDTVAPEVAAEKPVGALLGPGAERARM K L D E K P 3 0 0 2 0 2 4 1 0 0 1 1 0 0 2 0 1 0 0 3 0 0 20 0 2124.0223 Q9Y232 Q9Y232 220 239 CDYL Chromodomain Y-like protein yes yes 2 0.00020586 46.249 2 0.85708 1.2295 11.263 2 Median NaN NaN NaN 0 0 Median 0.85708 1.2295 11.263 2 0 Median 11275000 4840500 6434300 0 0 0 11275000 4840500 6434300 6853 1802 7006 25067;25068 37905;37906;37907 37905 3 LDQDLNEVK DTEANKEKNLEQYNKLDQDLNEVKARVEEL LEQYNKLDQDLNEVKARVEELDRKYYEVKN K L D V K A 0 0 1 2 0 1 1 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 9 0 1072.5401 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 437 445 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 7.5694E-08 105.4 1 1 0.95467 1.4098 NaN 1 Median NaN NaN NaN 0 0 Median 0.95467 1.4098 NaN 1 0 Median 6792100 3443100 3349000 0 0 0 6792100 3443100 3349000 6854 663 7007 25069;25070 37908;37909 37908 2 LDQLIYIPLPDEK NRPDIIDPAILRPGRLDQLIYIPLPDEKSR GRLDQLIYIPLPDEKSRVAILKANLRKSPV R L D E K S 0 0 0 2 0 1 1 0 0 2 3 1 0 0 2 0 0 0 1 0 0 0 13 0 1555.8498 V9HW80;P55072;Q96IF9;Q9NTC4;Q0IIN5 V9HW80 639 651 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 2 1.7163E-05 130.1 4 1 0.54487 0.71312 62.498 3 Median 0.51995 0.67413 7.9527 2 0 Median 1.4819 1.9813 NaN 1 0 Median 15042000 6622900 8419200 11767000 5148900 6617700 3275600 1474100 1801500 6855 1376 7008 25071;25072;25073;25074;25075 37910;37911;37912;37913;37914 37910 5 LDQPGNLPGSNR EEKDINTFLGTPVQKLDQPGNLPGSNRRLQ VQKLDQPGNLPGSNRRLQTRKEKAQALEEL K L D N R R 0 1 2 1 0 1 0 2 0 0 2 0 0 0 2 1 0 0 0 0 0 0 12 0 1266.6317 P46013 P46013 1806 1817 MKI67 Antigen KI-67 yes yes 2 5.801E-29 193.83 4 2 0.90034 1.2658 15.802 6 Median 0.86251 1.1725 10.693 4 0 Median 0.93785 1.5328 1.5292 2 0 Median 359110000 191730000 167380000 165380000 92316000 73067000 193720000 99415000 94309000 6856 1342 7009 25076;25077;25078;25079;25080;25081 37915;37916;37917;37918;37919;37920;37921;37922;37923;37924;37925;37926;37927 37921 13 LDQPGNLPGSNRR EEKDINTFLGTPVQKLDQPGNLPGSNRRLQ QKLDQPGNLPGSNRRLQTRKEKAQALEELT K L D R R L 0 2 2 1 0 1 0 2 0 0 2 0 0 0 2 1 0 0 0 0 0 0 13 1 1422.7328 P46013 P46013 1806 1818 MKI67 Antigen KI-67 yes yes 2;3 2.6152E-09 120.45 9 4 0.89964 1.2475 11.771 12 Median 0.89295 1.2309 3.1299 8 0 Median 0.95015 1.525 6.0633 4 0 Median 1292500000 677980000 614490000 893110000 466230000 426880000 399370000 211760000 187610000 6857 1342 7010 25082;25083;25084;25085;25086;25087;25088;25089;25090;25091;25092;25093;25094 37928;37929;37930;37931;37932;37933;37934;37935;37936;37937;37938;37939;37940;37941;37942;37943;37944;37945;37946;37947;37948;37949 37935 22 LDRLDLAR SPDGRTAMTVQILLKLDRLDLARKELKRMQ TVQILLKLDRLDLARKELKRMQDLDEDATL K L D A R K 1 2 0 2 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 8 1 970.55598 M0QXB4;O14579;Q53HJ6;Q7Z4Z1 M0QXB4 182 189 COPE Coatomer subunit epsilon yes no 3 0.038026 29.473 1 0.63325 0.82008 NaN 1 Median 0.63325 0.82008 NaN 1 0 Median NaN NaN NaN 0 0 Median 7512400 4895600 2616800 7512400 4895600 2616800 0 0 0 6858 1158 7011 25095 37950 37950 1 LDSIVIQQGR TVEERIVERAEMKLRLDSIVIQQGRLVDQN EMKLRLDSIVIQQGRLVDQNLNKIGKDEML R L D G R L 0 1 0 1 0 2 0 1 0 2 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1127.6299 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370;D7EZH4 O60264 627 636 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 2 0.012361 82.75 2 2.3397 3.2174 NaN 1 Median 2.3397 3.2174 NaN 1 0 Median NaN NaN NaN 0 0 Median 10180000 5848500 4331700 10180000 5848500 4331700 0 0 0 6859 1189 7012 25096;25097 37951;37952 37951 2 LDSSAQFGYYFR SAARDLGLDPGKQIKLDSSAQFGYYFRVTC QIKLDSSAQFGYYFRVTCKEEKVLRNNKNF K L D F R V 1 1 0 1 0 1 0 1 0 0 1 0 0 2 0 2 0 0 2 0 0 0 12 0 1452.6674 V9H019;Q53GS1;Q53FK0;E9PHA6;P43246;Q53RU4;B4DL39;B4DSB9;V9H068;B4DN49 V9H019 513 524 MSH2 DNA mismatch repair protein Msh2 yes no 2 0.0011744 76.465 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5189500 5189500 0 5189500 5189500 0 0 0 0 6860 1029 7013 25098 37953 37953 1 LDSSGVAFAVVGACQALGLR RAHIQSLFSFITGTKLDSSGVAFAVVGACQ VAFAVVGACQALGLRDVHLALSEDHAWSWL K L D L R D 4 1 0 1 1 1 0 3 0 0 3 0 0 1 0 2 0 0 0 3 0 0 20 0 1990.0306 A0A024R570;A0A024R5E3;A0A024R5D2;O00255;E7EN32;E7ENS2;E7EPR4;E7ET29 A0A024R570 152 171 MEN1 Menin yes no 2 0.0038795 40.577 1 0.64762 0.86152 NaN 1 Median 0.64762 0.86152 NaN 1 0 Median NaN NaN NaN 0 0 Median 2744300 1891300 853000 2744300 1891300 853000 0 0 0 6861 135 7014 25099 37954 37954 1 LDSSPSVSSTLAAK GLTPANSQASKATPKLDSSPSVSSTLAAKD KLDSSPSVSSTLAAKDDPDGKQEAKPQQAA K L D A K D 2 0 0 1 0 0 0 0 0 0 2 1 0 0 1 5 1 0 0 1 0 0 14 0 1361.7038 E7ETY2;B4DRA2;J3KQ96;Q13428 E7ETY2 1225 1238 TCOF1 Treacle protein no no 2 1.6476E-06 86.313 1 1 1.0603 1.4441 31.346 2 Median 1.4353 1.8024 NaN 1 0 Median 0.7833 1.157 NaN 1 0 Median 13680000 7068500 6612000 4189900 1517400 2672500 9490500 5551100 3939400 6862 1016;1135;1469 7015 25100;25101 37955;37956 37956 2 LDSVPVEEQEEFK QLNAAHQEALMKLERLDSVPVEEQEEFKQL ERLDSVPVEEQEEFKQLSDGIQELQQSLNQ R L D F K Q 0 0 0 1 0 1 4 0 0 0 1 1 0 1 1 1 0 0 0 2 0 0 13 0 1547.7355 Q9BZD4;A0A024R8Y0;E9PQC4;B1AQT4;E9PP32 Q9BZD4 169 181 NUF2;CDCA1 Kinetochore protein Nuf2 yes no 2 0.010314 47.844 1 1 0.42442 0.64055 NaN 1 Median NaN NaN NaN 0 0 Median 0.42442 0.64055 NaN 1 0 Median 18257000 12180000 6076600 2216200 0 2216200 16041000 12180000 3860400 6863 1727 7016 25102;25103 37957;37958 37957 2 LDTDDLDEIEK ILNRIQEHFNKKIERLDTDDLDEIEKIAN_ KIERLDTDDLDEIEKIAN____________ R L D E K I 0 0 0 4 0 0 2 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 11 0 1304.5984 I3L0H8;Q9HBZ9;F6QDS0;Q9NUU7;B4DS24;Q2NL95;Q7Z4W5;A0A0U4B4U6;H3BQK0;Q9UMR2;Q53G16;Q68DY7;Q69YM2;I3L352;Q59FQ9;B4DL69;A0A024QZ90 I3L0H8 434 444 DDX19A;DDX19B;DKFZp686C21137;DKFZp762C1313;hCG_1998531 ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 2 0.00021543 84.17 1 1 0.56268 0.72439 NaN 1 Median 0.56268 0.72439 NaN 1 0 Median NaN NaN NaN 0 0 Median 9771900 3251200 6520800 4761400 3251200 1510300 5010500 0 5010500 6864 1058 7017 25104;25105 37959;37960 37959 2 LDTSQWPLLLK HAEEFLIKPESKVAKLDTSQWPLLLKNFDK KVAKLDTSQWPLLLKNFDKLNVRTTHYTPL K L D L K N 0 0 0 1 0 1 0 0 0 0 4 1 0 0 1 1 1 1 0 0 0 0 11 0 1312.7391 O60832;C9IYT0;U5UA77;H7C0M1;U5U7S7;H7C2Q9 O60832 47 57 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 0.00022043 83.869 2 0.6105 0.93834 3.9805 2 Median NaN NaN NaN 0 0 Median 0.6105 0.93834 3.9805 2 0 Median 45829000 27388000 18440000 0 0 0 45829000 27388000 18440000 6865 1193 7018 25106;25107 37961;37962;37963;37964 37961 4 LDVEEPDSANSSFYSTR RRRTTQIINITMTKKLDVEEPDSANSSFYS VEEPDSANSSFYSTRSAPASQASLRATSST K L D T R S 1 1 1 2 0 0 2 0 0 0 1 0 0 1 1 4 1 0 1 1 0 0 17 0 1915.8436 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q9UNL7;Q4LE64;Q14980 Q4LE64 1809 1825 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.0019734 50.088 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3841700 3841700 0 0 0 0 3841700 3841700 0 6866 148;1499 7019 25108 37965 37965 1 LDVGNFSWGSECCTR TVRVRGGNKKYRALRLDVGNFSWGSECCTR LDVGNFSWGSECCTRKTRIIDVVYNASNNE R L D T R K 0 1 1 1 2 0 1 2 0 0 1 0 0 1 0 2 1 1 0 1 0 0 15 0 1786.7403 Q5JR94;P62241 Q5JR94 60 74 RPS8 40S ribosomal protein S8 yes no 2 0.00030639 56.122 2 0.17148 0.27706 4.8219 2 Median NaN NaN NaN 0 0 Median 0.17148 0.27706 4.8219 2 0 Median 111560000 96288000 15269000 0 0 0 111560000 96288000 15269000 6867 1399 7020 25109;25110 37966;37967 37967 2 LDVQFSGLTK PTHFTVNAKAAGKGKLDVQFSGLTKGDAVR AGKGKLDVQFSGLTKGDAVRDVDIIDHHDN K L D T K G 0 0 0 1 0 1 0 1 0 0 2 1 0 1 0 1 1 0 0 1 0 0 10 0 1106.5972 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 907 916 FLNA Filamin-A yes no 2 4.1057E-11 161.79 3 0.96341 1.2031 12.685 3 Plateau 0.96341 1.2031 12.685 3 0 Plateau NaN NaN NaN 0 0 Median 70707000 35637000 35070000 70707000 35637000 35070000 0 0 0 6868 1287 7021 25111;25112;25113 37968;37969;37970;37971;37972;37973 37972 6 LDVSLPFVSR QELILFADLLCQYHRLDVSLPFVSRGPLTV CQYHRLDVSLPFVSRGPLTVEETPRVQGET R L D S R G 0 1 0 1 0 0 0 0 0 0 2 0 0 1 1 2 0 0 0 2 0 0 10 0 1131.6288 Q14676;B4DYH4;A2AB05;A1Z5I7;A1Z5I6 Q14676 133 142 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 2 0.0041391 100.25 2 0.86038 1.1777 7.3753 2 Median 0.86038 1.1777 7.3753 2 0 Median NaN NaN NaN 0 0 Median 11692000 6368700 5323600 11692000 6368700 5323600 0 0 0 6869 1491 7022 25114;25115 37974;37975;37976 37974 3 LDVTLGPVPEIGGSEAPAPQNK QCLAEFKRDLEWVERLDVTLGPVPEIGGSE VPEIGGSEAPAPQNKDQKAVDPEDDFQREM R L D N K D 2 0 1 1 0 1 2 3 0 1 2 1 0 0 4 1 1 0 0 2 0 0 22 0 2188.1376 Q6IB29;H7C2Q8;Q99848;B4DHA6;B4DRX8 Q6IB29 70 91 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 3.3692E-111 254.45 5 2 0.98332 1.2961 7.3352 7 Median 1.0039 1.3226 4.7493 5 0 Median 0.74355 1.1706 0.16886 2 0 Median 1580500000 846240000 734210000 772240000 382010000 390230000 808210000 464230000 343980000 6870 1123 7023 25116;25117;25118;25119;25120;25121;25122 37977;37978;37979;37980;37981;37982;37983;37984;37985;37986;37987;37988 37980 12 LDYEDIIDDLPCR PGDKTFEEYLDEYYRLDYEDIIDDLPCRFK YRLDYEDIIDDLPCRFKYRTVVPCDFGLST R L D C R F 0 1 0 4 1 0 1 0 0 2 2 0 0 0 1 0 0 0 1 0 0 0 13 0 1635.745 Q8N9T8;A0A024R7C4;B4DUT2;H0YH26 Q8N9T8 510 522 KRI1;FLJ12949 Protein KRI1 homolog yes no 2 0.0078383 42.001 1 0.83049 1.1055 NaN 1 Median 0.83049 1.1055 NaN 1 0 Median NaN NaN NaN 0 0 Median 2185600 1195900 989670 2185600 1195900 989670 0 0 0 6871 1645 7024 25123 37989 37989 1 LDYGQHVVAGTPGR HACIGGTNVGEDIRKLDYGQHVVAGTPGRV KLDYGQHVVAGTPGRVFDMIRRRSLRTRAI K L D G R V 1 1 0 1 0 1 0 3 1 0 1 0 0 0 1 0 1 0 1 2 0 0 14 0 1468.7423 A0A024R8W0;P38919 A0A024R8W0 153 166 DDX48;EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 3 0.012754 37.555 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2581900 0 2581900 0 0 0 2581900 0 2581900 6872 206 7025 25124 37990;37991 37991 2 LDYILGLK RRLVRIGVLDEGKMKLDYILGLKIEDFLER LDEGKMKLDYILGLKIEDFLERRLQTQVFK K L D L K I 0 0 0 1 0 0 0 1 0 1 3 1 0 0 0 0 0 0 1 0 0 0 8 0 933.55352 A0A024R4M0;P46781;B5MCT8;C9JM19;B7Z732;A5D904 A0A024R4M0 94 101 RPS9 40S ribosomal protein S9 yes no 2 0.0065539 107.32 6 1 0.74234 0.96729 10.167 5 Median 0.76835 1.0062 6.9825 4 0 Median 0.54599 0.83978 NaN 1 0 Median 531360000 303250000 228110000 503470000 284370000 219100000 27893000 18887000 9006500 6873 124 7026 25125;25126;25127;25128;25129;25130;25131 37992;37993;37994;37995;37996;37997;37998;37999;38000;38001;38002 37992 11 LDYLGVSYGLTPR LPPLLLKLNERPAERLDYLGVSYGLTPRLL ERLDYLGVSYGLTPRLLKFWKRAGFVPVYL R L D P R L 0 1 0 1 0 0 0 2 0 0 3 0 0 0 1 1 1 0 2 1 0 0 13 0 1452.7613 Q9H0A0;A0A087WV29 Q9H0A0 706 718 NAT10 N-acetyltransferase 10 yes no 2 1.7559E-06 138.76 4 2 0.75406 1.0768 3.9849 6 Median 0.77195 1.0624 1.7864 4 0 Median 0.68996 1.1393 1.6855 2 0 Median 762390000 442500000 319890000 325650000 180450000 145200000 436740000 262050000 174690000 6874 1730 7027 25132;25133;25134;25135;25136;25137 38003;38004;38005;38006;38007;38008;38009;38010;38011;38012;38013 38003 11 LEAAEDIAYQLSR NSLATAGDGLIELRKLEAAEDIAYQLSRSR RKLEAAEDIAYQLSRSRNITYLPAGQSVLL K L E S R S 3 1 0 1 0 1 2 0 0 1 2 0 0 0 0 1 0 0 1 0 0 0 13 0 1477.7413 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0 Q6PUJ7 241 253 HEL-S-54e;PHB Prohibitin yes no 2 3.7417E-12 154.15 4 0.52012 0.70088 3.7106 4 Median 0.52012 0.70088 3.7106 4 0 Median NaN NaN NaN 0 0 Median 113260000 75258000 38003000 113260000 75258000 38003000 0 0 0 6875 600 7028 25138;25139;25140;25141 38014;38015;38016;38017;38018;38019;38020;38021 38016 8 LEAAIAEAEERGELALK RLQAEIDNIKNQRAKLEAAIAEAEERGELA AAIAEAEERGELALKDARAKQEELEAALQR K L E L K D 5 1 0 0 0 0 5 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 17 1 1811.9629 CON__P08729;Q96GE1;CON__Q3KNV1;P08729;B3KY79 CON__Q3KNV1 332 348 KRT7 Keratin, type II cytoskeletal 7 no no 2;3 0.00091779 108.71 4 1 0.30606 0.40051 97.897 3 Median 0.30349 0.39874 0.62625 2 0 Median 1.3662 2.1731 NaN 1 0 Median 78394000 58730000 19664000 63402000 52983000 10419000 14992000 5746700 9245700 + 6876 968;957 7029 25142;25143;25144;25145;25146 38022;38023;38024;38025;38026;38027 38022 6 LEAALGEAK TLEGELHDLRGQVAKLEAALGEAKKQLQDE RGQVAKLEAALGEAKKQLQDEMLRRVDAEN K L E A K K 3 0 0 0 0 0 2 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 0 900.49165 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;Q5TCI8;H0YAB0 P02545 172 180 LMNA Prelamin-A/C;Lamin-A/C yes no 2 0.00027576 118.33 2 2 1.1219 1.5391 61.495 4 Median 0.71283 0.89092 4.63 2 0 Median 1.7111 2.5821 0.48924 2 0 Median 105910000 49823000 56084000 72878000 38149000 34729000 33028000 11674000 21355000 6877 1229 7030 25147;25148;25149;25150 38028;38029;38030;38031;38032 38030 5 LEAALGEAKK TLEGELHDLRGQVAKLEAALGEAKKQLQDE GQVAKLEAALGEAKKQLQDEMLRRVDAENR K L E K K Q 3 0 0 0 0 0 2 1 0 0 2 2 0 0 0 0 0 0 0 0 0 0 10 1 1028.5866 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;Q5TCI8;H0YAB0 P02545 172 181 LMNA Prelamin-A/C;Lamin-A/C yes no 2;3 0.00068214 95.502 6 1 0.72959 0.89222 47.802 6 Median 0.72551 0.88668 9.3234 5 0 Median 1.7275 2.7209 NaN 1 0 Median 151480000 79225000 72257000 137840000 74270000 63569000 13641000 4954100 8687100 6878 1229 7031 25151;25152;25153;25154;25155;25156;25157 38033;38034;38035;38036;38037;38038;38039;38040 38036 8 LEAATQQNQQLR VAEMARQELQETQERLEAATQQNQQLRAQL QERLEAATQQNQQLRAQLSLMAHPGEGDGL R L E L R A 2 1 1 0 0 4 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 12 0 1398.7215 Q08379 Q08379 675 686 GOLGA2 Golgin subfamily A member 2 yes yes 2 0.00058224 128.28 2 1 1.3935 1.7877 136.13 2 Median 0.51113 0.68274 NaN 1 0 Median 3.7992 4.6809 NaN 1 0 Median 6263200 4363100 1900000 4852000 3927100 924930 1411100 436040 975100 6879 1449 7032 25158;25159;25160 38041;38042;38043 38041 2 LEAAYSPR ATLLWLIQKLSRIAKLEAAYSPRNPLKRTC KLSRIAKLEAAYSPRNPLKRTCIFKFLGAV K L E P R N 2 1 0 0 0 0 1 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 8 0 905.46068 O75691;B4DN27 O75691 2632 2639 UTP20 Small subunit processome component 20 homolog yes no 2 0.020712 56.659 1 0.9007 1.2741 NaN 1 Median NaN NaN NaN 0 0 Median 0.9007 1.2741 NaN 1 0 Median 7287800 3731200 3556600 0 0 0 7287800 3731200 3556600 6880 1207 7033 25161 38044 38044 1 LEAEDYLKQQR RELVTQMIHREPDKRLEAEDYLKQQRGNAF PDKRLEAEDYLKQQRGNAFPEIFYTFLQPY R L E Q R G 1 1 0 1 0 2 2 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 11 1 1391.7045 B2RAJ6;A0JP11;Q99570 B2RAJ6 302 312 PIK3R4 Phosphoinositide 3-kinase regulatory subunit 4 yes no 2;3 0.016479 48.036 2 0.73994 0.96985 2.636 2 Median 0.73994 0.96985 2.636 2 0 Median NaN NaN NaN 0 0 Median 427610000 252120000 175480000 427610000 252120000 175480000 0 0 0 6881 528 7034 25162;25163 38045;38046 38045 2 LEAEGVPEVSEK MAELAKELPQVSFVKLEAEGVPEVSEKYEI FVKLEAEGVPEVSEKYEISSVPTFLFFKNS K L E E K Y 1 0 0 0 0 0 4 1 0 0 1 1 0 0 1 1 0 0 0 2 0 0 12 0 1285.6402 A0A140VJK1;O76003 A0A140VJK1 68 79 GLRX3 Glutaredoxin-3 yes no 2 0.0084862 54.486 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6688900 2692100 3996900 2692100 2692100 0 3996900 0 3996900 6882 496 7035 25164;25165;25166 38047;38048;38049 38049 3 LEAEIATYR RQAQEYEALLNIKVKLEAEIATYRRLLEDG LNIKVKLEAEIATYRRLLEDGEDFK_____ K L E Y R R 2 1 0 0 0 0 2 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 9 0 1064.5502 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__P05784 F8VZY9 373 381 KRT18 Keratin, type I cytoskeletal 18 no no 2 1.7487E-06 174.52 5 2 0.20837 0.28614 119.05 5 Median 0.18858 0.25622 18.375 3 0 Median 1.3769 2.1225 3.2438 2 0 Median 252750000 205030000 47717000 210400000 186890000 23512000 42353000 18148000 24205000 + 6883 252;954 7036 25167;25168;25169;25170;25171;25172;25173 38050;38051;38052;38053;38054;38055;38056;38057;38058;38059;38060 38052 11 LEAEIATYRR RQAQEYEALLNIKVKLEAEIATYRRLLEDG NIKVKLEAEIATYRRLLEDGEDFK______ K L E R R L 2 2 0 0 0 0 2 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 10 1 1220.6513 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__P05784 F8VZY9 373 382 KRT18 Keratin, type I cytoskeletal 18 no no 3 5.651E-05 125.68 4 0.22725 0.3153 31.238 3 Median 0.22725 0.3153 31.238 3 0 Median NaN NaN NaN 0 0 Median 39190000 27239000 11951000 39190000 27239000 11951000 0 0 0 + 6884 252;954 7037 25174;25175;25176;25177 38061;38062;38063;38064 38062 4 LEAELGNMQGLVEDFK NLRRQLETLGQEKLKLEAELGNMQGLVEDF EAELGNMQGLVEDFKNKYEDEINKRTEMEN K L E F K N 1 0 1 1 0 1 3 2 0 0 3 1 1 1 0 0 0 0 0 1 0 0 16 0 1791.8713 CON__P05787;P05787;Q969I0;F8VUG2;F8VP67;H0YIB2;F8W1U3 CON__P05787 161 176 KRT8 Keratin, type II cytoskeletal 8 no no 2 2.7544E-13 145.6 4 0.23486 0.29067 25.874 3 Median 0.23486 0.29067 25.874 3 0 Median NaN NaN NaN 0 0 Median 44162000 38953000 5209200 44162000 38953000 5209200 0 0 0 + 6885 955;1068 7038 25178;25179;25180;25181 38065;38066;38067;38068;38069 38066 4 LEAIITPPPAK IHPELLAKKRGSKGKLEAIITPPPAKKAKS SKGKLEAIITPPPAKKAKSPSQKKPVSKKA K L E A K K 2 0 0 0 0 0 1 0 0 2 1 1 0 0 3 0 1 0 0 0 0 0 11 0 1148.6805 O75367;D6RCF2 O75367 124 134 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2 0.00036454 99.815 4 2 0.69015 1.0068 6.4668 6 Linear 0.7261 0.89323 4.4552 4 0 Median 0.62553 1.0006 2.2986 2 0 Median 177730000 105680000 72053000 77634000 44891000 32744000 100100000 60787000 39309000 6886 1198 7039 25182;25183;25184;25185;25186;25187 38070;38071;38072;38073;38074;38075;38076;38077;38078;38079;38080;38081;38082;38083 38075 14 LEAIVQK MKTKVLPPRKGRGLKLEAIVQKITSPSLKK PRKGRGLKLEAIVQKITSPSLKKFACKAPG K L E Q K I 1 0 0 0 0 1 1 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 7 0 799.48035 W5ZR30;Q9UGU0;Q7Z5J4 Q7Z5J4 1329 1335 TCF20;RAI1 Transcription factor 20;Retinoic acid-induced protein 1 no no 2 0.040255 54.571 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6887 1617;1783 7040 25188 38084 38084 1 LEALAILLQK LQFPELRLVQFDSGKLEALAILLQKLKSEG FDSGKLEALAILLQKLKSEGRRVLILSQMI K L E Q K L 2 0 0 0 0 1 1 0 0 1 4 1 0 0 0 0 0 0 0 0 0 0 10 0 1110.7012 Q96L91 Q96L91 1900 1909 EP400 E1A-binding protein p400 yes yes 2 0.010987 80.438 2 0.67299 0.87749 NaN 1 Median 0.67299 0.87749 NaN 1 0 Median NaN NaN NaN 0 0 Median 1748600 1249700 498870 1748600 1249700 498870 0 0 0 6888 1692 7041 25189;25190 38085;38086 38086 2 LEALITQTR MRLRSGGTEGLLAEKLEALITQTRAKQAAT GLLAEKLEALITQTRAKQAATMSEVEWRGR K L E T R A 1 1 0 0 0 1 1 0 0 1 2 0 0 0 0 0 2 0 0 0 0 0 9 0 1043.5975 Q9UHB9;B4DVI7;Q96K98;B3KMI9 Q9UHB9 278 286 SRP68 Signal recognition particle subunit SRP68 yes no 2 0.0035034 76.827 4 1 0.62266 0.87158 48.384 4 Median 0.58601 0.81871 12.564 3 0 Median 1.6228 2.1071 NaN 1 0 Median 18950000 13184000 5766300 16257000 12219000 4037500 2693400 964590 1728800 6889 1784 7042 25191;25192;25193;25194;25195 38087;38088;38089;38090;38091 38090 5 LEALSVK AGSGKNDHAEKVAEKLEALSVKEETKEDAE HAEKVAEKLEALSVKEETKEDAEEKQ____ K L E V K E 1 0 0 0 0 0 1 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 7 0 758.4538 A0A140VK94;F6WQW2;P43487;C9JXG8;D3DX26;Q5T0Z6;Q9C010 A0A140VK94 184 190 RANBP1;PKIB Ran-specific GTPase-activating protein;cAMP-dependent protein kinase inhibitor beta yes no 2 0.031185 62.464 1 0.51444 0.64953 NaN 1 Median 0.51444 0.64953 NaN 1 0 Median NaN NaN NaN 0 0 Median 9501800 5878800 3623000 9501800 5878800 3623000 0 0 0 6890 511 7043 25196 38092 38092 1 LEANHGLLVAR AAQERAVRRAAQVQRLEANHGLLVARGKLH QVQRLEANHGLLVARGKLHVLLFKEEGEVP R L E A R G 2 1 1 0 0 0 1 1 1 0 3 0 0 0 0 0 0 0 0 1 0 0 11 0 1191.6724 Q969G5;E9PIE3 Q969G5 109 119 PRKCDBP Protein kinase C delta-binding protein yes no 3 0.0096173 30.55 1 0.50684 0.68427 NaN 1 Median 0.50684 0.68427 NaN 1 0 Median NaN NaN NaN 0 0 Median 7967600 4370500 3597100 7967600 4370500 3597100 0 0 0 6891 1678 7044 25197 38093 38093 1 LEAQEQAFLAR KAARLGITMKAKLARLEAQEQAFLARLKGQ KLARLEAQEQAFLARLKGQDPGAPQLQSES R L E A R L 3 1 0 0 0 2 2 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 11 0 1274.6619 Q5T3I0;A0A0A0MRK1;E9PAV9;F8W895 Q5T3I0 174 184 GPATCH4 G patch domain-containing protein 4 yes no 2 1.3309E-22 179.51 4 2 0.93507 1.2772 14.978 6 Median 0.90462 1.2266 4.6232 4 0 Median 0.99448 1.6298 0.88148 2 0 Median 396270000 205560000 190710000 159660000 81633000 78031000 236600000 123930000 112670000 6892 1568 7045 25198;25199;25200;25201;25202;25203 38094;38095;38096;38097;38098;38099;38100;38101;38102;38103;38104;38105;38106 38102 13 LEATINELV KGQKVGEFSGANKEKLEATINELV______ GANKEKLEATINELV_______________ K L E L V - 1 0 1 0 0 0 2 0 0 1 2 0 0 0 0 0 1 0 0 1 0 0 9 0 1000.5441 H9ZYJ2;P10599 H9ZYJ2 97 105 TXN Thioredoxin yes no 1 0.0070445 111.74 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 465210 0 0 465210 0 0 0 0 0 6893 1124 7046 25204 38107 38107 1 LECDEECSALER EISKLITKKEVHQARLECDEECSALERKKR QARLECDEECSALERKKRLAEAFHISEDSD R L E E R K 1 1 0 1 2 0 4 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 12 0 1509.6076 Q12986;O43831 Q12986 945 956 NFX1 Transcriptional repressor NF-X1 yes no 2 0.0022344 64.82 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3049000 3049000 0 3049000 3049000 0 0 0 0 6894 1460 7047 25205;25206 38108;38109 38108 2 LECLLNECTSLCENR DLSQKYKAAQEKNSKLECLLNECTSLCENR LECLLNECTSLCENRKNELEQLKEAFAKEH K L E N R K 0 1 2 0 3 0 3 0 0 0 4 0 0 0 0 1 1 0 0 0 0 0 15 0 1909.8332 P49454 P49454 1053 1067 CENPF Centromere protein F yes yes 2 0.02045 85.522 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6895 1351 7048 25207 38110 38110 1 LECVEPNCR IFRKKAKTTKKIVLRLECVEPNCRSKRMLA KKIVLRLECVEPNCRSKRMLAIKRCKHFEL R L E C R S 0 1 1 0 2 0 2 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 9 0 1175.5063 J3KQN4;Q969Q0;P83881;B2R4V2;H0Y5B4;H7BZ11 J3KQN4 106 114 RPL36A;RPL36AL;RPL36A-HNRNPH2 60S ribosomal protein L36a-like;60S ribosomal protein L36a yes no 2 2.335E-11 164.72 5 2 0.79796 1.0987 21.366 7 Median 0.90249 1.2309 7.5248 5 0 Median 0.46956 0.77872 0.49639 2 0 Median 6926500000 3702100000 3224400000 6328600000 3302700000 3025800000 597960000 399360000 198590000 6896 1136 7049 25208;25209;25210;25211;25212;25213;25214 38111;38112;38113;38114;38115;38116;38117;38118;38119;38120;38121;38122 38118 12 LEDCVLLATDVAAR MHQKQRLRNLEQFARLEDCVLLATDVAARG RLEDCVLLATDVAARGLDIPKVQHVIHYQV R L E A R G 3 1 0 2 1 0 1 0 0 0 3 0 0 0 0 0 1 0 0 2 0 0 14 0 1544.7868 B4DKV2;G3V529;Q9GZR7;F5GYL3;B4E300;B4DM03;A0A087WXU8;Q7Z4X3;Q7Z4W0;B4DGI6;Q59FS7 B4DKV2 543 556 DDX24 ATP-dependent RNA helicase DDX24 yes no 2 0.00076657 121.68 1 0.88442 1.2067 NaN 1 Median 0.88442 1.2067 NaN 1 0 Median NaN NaN NaN 0 0 Median 3915600 2424500 1491100 3915600 2424500 1491100 0 0 0 6897 822 7050 25215 38123 38123 1 LEDIFQQEFSTPSR YGSLIPLSTDEVVEKLEDIFQQEFSTPSRK KLEDIFQQEFSTPSRKGLVLQLIQSYQRMP K L E S R K 0 1 0 1 0 2 2 0 0 1 1 0 0 2 1 2 1 0 0 0 0 0 14 0 1695.8104 Q9H4L4;J3QL36;A0A087X0R7 Q9H4L4 343 356 SENP3;SENP3-EIF4A1 Sentrin-specific protease 3 yes no 2 0.047565 70.685 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 639880 639880 0 639880 639880 0 0 0 0 6898 1733 7051 25216 38124 38124 1 LEDLEVIQHR DEKEQWLNNMQIPEKLEDLEVIQHRFESLE QIPEKLEDLEVIQHRFESLEPEMNNQASRV K L E H R F 0 1 0 1 0 1 2 0 1 1 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1250.6619 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24 B2ZZ89 881 890 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 3.0271E-05 104.17 3 1.0522 1.4703 20.765 2 Median 1.0522 1.4703 20.765 2 0 Median NaN NaN NaN 0 0 Median 7074400 3663100 3411300 7074400 3663100 3411300 0 0 0 6899 346 7052 25217;25218;25219 38125;38126;38127 38127 3 LEDLLQDAQDEK LRRKYSCDRSATVTRLEDLLQDAQDEKEQL VTRLEDLLQDAQDEKEQLNEYKGHLSGLAK R L E E K E 1 0 0 3 0 2 2 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 12 0 1415.678 Q15149 Q15149 897 908 PLEC Plectin yes yes 2 3.6753E-16 175.65 5 1 0.79825 1.0081 49.03 3 Median 0.76648 0.97633 4.5338 2 0 Median 1.6241 2.2783 NaN 1 0 Median 23249000 13719000 9529500 19281000 12177000 7104400 3967600 1542500 2425100 6900 1507 7053 25220;25221;25222;25223;25224;25225 38128;38129;38130;38131;38132;38133;38134 38129 7 LEDLLRK AEDEDLRVHFEESSKLEDLLRKVRAKETRK VHFEESSKLEDLLRKVRAKETRKRALSRLK K L E R K V 0 1 0 1 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 1 885.52837 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356 A0A024R1N4 239 245 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.019429 108.98 4 0.53892 0.71517 3.479 4 Median 0.53892 0.71517 3.479 4 0 Median NaN NaN NaN 0 0 Median 95557000 60900000 34657000 95557000 60900000 34657000 0 0 0 6901 62 7054 25226;25227;25228;25229 38135;38136;38137;38138 38137 4 LEDVALQILLACPVSK IPDAMNLILLLVTEKLEDVALQILLACPVS EDVALQILLACPVSKEDGPSVFGSFFLQHC K L E S K E 2 0 0 1 1 1 1 0 0 1 4 1 0 0 1 1 0 0 0 2 0 0 16 0 1767.9805 E5KNY5;P42704;B4DSR0;B8ZZ38;A0A0C4DG06;C9JCA9 E5KNY5 350 365 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 3.9309E-10 132.86 2 0.40818 0.53201 9.9555 2 Median 0.40818 0.53201 9.9555 2 0 Median NaN NaN NaN 0 0 Median 7395900 4989600 2406300 7395900 4989600 2406300 0 0 0 6902 1001 7055 25230;25231 38139;38140 38139 2 LEDVLPLAFTR RKNRSSAVDPEPQVKLEDVLPLAFTRLCEP PQVKLEDVLPLAFTRLCEPKEASYSLIRKY K L E T R L 1 1 0 1 0 0 1 0 0 0 3 0 0 1 1 0 1 0 0 1 0 0 11 0 1272.7078 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 259 269 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 6.4049E-09 153.97 6 2 0.5549 0.76856 10.364 7 Median 0.562 0.78057 8.7638 5 0 Median 0.40676 0.67103 1.6265 2 0 Median 1121200000 746990000 374260000 720940000 464630000 256310000 400310000 282360000 117950000 6903 1565 7056 25232;25233;25234;25235;25236;25237;25238;25239 38141;38142;38143;38144;38145;38146;38147;38148;38149;38150;38151;38152;38153;38154;38155;38156 38144 16 LEEDINSSMTNSTAASRPPVTLR PTNAIFKAFAMIIDKLEEDINSSMTNSTAA MTNSTAASRPPVTLRLVVPATQCGSLIGKG K L E L R L 2 2 2 1 0 0 2 0 0 1 2 0 1 0 2 4 3 0 0 1 0 0 23 1 2488.2228 Q53SS8;Q15365 Q53SS8 79 101 PCBP1 Poly(rC)-binding protein 1 yes no 3 2.3345E-08 69.361 4 1 2.768 3.8241 150.69 3 Plateau 0.25626 0.33398 50.463 2 0 Median 3.0175 4.2173 NaN 1 0 Median 24485000 15901000 8583900 16006000 13658000 2348400 8479000 2243500 6235500 6904 1509 7057 25240;25241;25242;25243;25244 38157;38158;38159;38160;38161;38162 38161 693 6 LEEDISSSMTNSTAASRPPVTLR PTNAIFKAFAMIIDKLEEDISSSMTNSTAA MTNSTAASRPPVTLRLVVPASQCGSLIGKG K L E L R L 2 2 1 1 0 0 2 0 0 1 2 0 1 0 2 5 3 0 0 1 0 0 23 1 2461.2119 Q15366;B4DLC0;F8W0G4;F8VXH9;F8W1G6;H3BND9;H3BRU6;F8VZX2;B4DRD7 Q15366 79 101 PCBP2 Poly(rC)-binding protein 2 no no 3 3.0549E-08 61.222 3 2 3.8983 5.7671 170.51 3 Median 0.22418 0.30611 NaN 1 0 Median 3.9077 5.8674 2.4374 2 0 Median 46524000 16335000 30189000 9067900 8491600 576310 37456000 7843800 29613000 6905 1510;1064 7058;7059 25245;25246;25247;25248;25249 38163;38164;38165;38166;38167;38168 38168 381 6 LEEDKPAVER AAEEERRLRQRNRLRLEEDKPAVERCLEEL RNRLRLEEDKPAVERCLEELVFGDVENDED R L E E R C 1 1 0 1 0 0 3 0 0 0 1 1 0 0 1 0 0 0 0 1 0 0 10 1 1184.6037 Q9Y5J1;B2RAX6 Q9Y5J1 80 89 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2 0.0032232 91.584 2 0.86837 1.3209 3.026 2 Median NaN NaN NaN 0 0 Median 0.86837 1.3209 3.026 2 0 Median 11830000 5947300 5882300 0 0 0 11830000 5947300 5882300 6906 1830 7060 25250;25251 38169;38170;38171;38172;38173 38172 5 LEEELEGMRR RLKRTASEDSCKRKKLEEELEGMRRSLKEQ CKRKKLEEELEGMRRSLKEQAIKITNLTQQ K L E R R S 0 2 0 0 0 0 4 1 0 0 2 0 1 0 0 0 0 0 0 0 0 0 10 1 1260.6132 P15924 P15924 1594 1603 DSP Desmoplakin yes yes 2 0.028857 44.447 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6907 1270 7061 25252 38174 38174 1 LEEGEVAMGR SSKTLLCLSLTGPHKLEEGEVAMGRVVKVT TGPHKLEEGEVAMGRVVKVTPNEGLTVSFP K L E G R V 1 1 0 0 0 0 3 2 0 0 1 0 1 0 0 0 0 0 0 1 0 0 10 0 1089.5125 Q14690 Q14690 1227 1236 PDCD11 Protein RRP5 homolog yes yes 2 0.004834 55.064 1 0.64369 0.93931 NaN 1 Median NaN NaN NaN 0 0 Median 0.64369 0.93931 NaN 1 0 Median 8217300 5186700 3030600 0 0 0 8217300 5186700 3030600 6908 1494 7062 25253 38175;38176 38175 673 2 LEEGLVNNK VNLGVLAQKSDFCLKLEEGLVNNKYDTALN SDFCLKLEEGLVNNKYDTALNLLKESGPSG K L E N K Y 0 0 2 0 0 0 2 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 9 0 1014.5346 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 775 783 WDR36 WD repeat-containing protein 36 yes no 2 0.0003722 122.13 2 2 0.74468 1.018 5.7717 4 Median 0.84517 1.0657 3.2394 2 0 Median 0.64813 0.97424 2.9736 2 0 Median 49529000 27398000 22130000 28566000 15340000 13226000 20963000 12058000 8904200 6909 404 7063 25254;25255;25256;25257 38177;38178;38179;38180;38181;38182;38183;38184;38185 38177 9 LEEGPPVTTVLTR ANDATFEIKKCDLHRLEEGPPVTTVLTRED HRLEEGPPVTTVLTREDGLKYYRMMQTVRR R L E T R E 0 1 0 0 0 0 2 1 0 0 2 0 0 0 2 0 3 0 0 2 0 0 13 0 1410.7718 Q5JPU0;Q5JPU1;Q53GE3;A0A024RBX9;P08559;Q5JPU2;Q5JPT9 Q5JPU0 46 58 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha;Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 2 0.0005673 99.752 1 0.42007 0.58156 NaN 1 Median 0.42007 0.58156 NaN 1 0 Median NaN NaN NaN 0 0 Median 2956200 1564300 1391900 2956200 1564300 1391900 0 0 0 6910 284 7064 25258 38186 38186 1 LEELHVIDVK PLDRDNKELKAFNIRLEELHVIDVKFLYGC AFNIRLEELHVIDVKFLYGCQAPTICFVYQ R L E V K F 0 0 0 1 0 0 2 0 1 1 2 1 0 0 0 0 0 0 0 2 0 0 10 0 1193.6656 Q16531;F5GY55;B7Z2A1;F5H2L3;F5GWI0 Q16531 159 168 DDB1 DNA damage-binding protein 1 yes no 2;3 2.4786E-60 179.8 7 3 0.84929 1.2253 8.9959 6 Median 0.86602 1.0818 9.1763 3 0 Median 0.7994 1.2268 5.6815 3 0 Median 179850000 89371000 90479000 94199000 43000000 51199000 85652000 46371000 39281000 6911 1520 7065 25259;25260;25261;25262;25263;25264;25265;25266;25267;25268 38187;38188;38189;38190;38191;38192;38193;38194;38195;38196;38197;38198;38199 38192 13 LEELSLEGNPFLTVNDNLK NNQLGDVTALCQFPKLEELSLEGNPFLTVN SLEGNPFLTVNDNLKVSFLLPTLRKVNGKD K L E L K V 0 0 3 1 0 0 3 1 0 0 5 1 0 1 1 1 1 0 0 1 0 0 19 0 2144.1001 A0A140VJD0;Q9UFC0;H7C5S6;Q59FT0 A0A140VJD0 93 111 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes no 2 4.008E-15 131.53 1 0.51239 0.64303 NaN 1 Median 0.51239 0.64303 NaN 1 0 Median NaN NaN NaN 0 0 Median 6622900 4287700 2335200 6622900 4287700 2335200 0 0 0 6912 493 7066 25269 38200;38201 38200 2 LEELTMDGAK FIGNRRELNEDKLEKLEELTMDGAKAKAIL DKLEKLEELTMDGAKAKAILDASRSSMGMD K L E A K A 1 0 0 1 0 0 2 1 0 0 2 1 1 0 0 0 1 0 0 0 0 0 10 0 1105.5325 A8K9K6;O00567;A0PJ92;Q5JXT2;H0YDU4 A8K9K6 231 240 NOP56 Nucleolar protein 56 yes no 2 7.7532E-07 93.178 6 3 0.43153 0.70038 5.5654 3 Median 0.57444 0.75418 NaN 1 0 Median 0.42987 0.68823 2.4747 2 0 Median 117100000 87373000 29728000 5788700 4834200 954550 111310000 82539000 28773000 6913 647 7067;7068 25270;25271;25272;25273;25274;25275;25276;25277;25278 38202;38203;38204;38205;38206;38207;38208;38209;38210;38211;38212;38213;38214 38208 224 13 LEEMFPDEVDTPR EEAEAKMLEKYKQERLEEMFPDEVDTPRDV ERLEEMFPDEVDTPRDVAARIRFQKYRGLK R L E P R D 0 1 0 2 0 0 3 0 0 0 1 0 1 1 2 0 1 0 0 1 0 0 13 0 1576.7079 Q2NL82 Q2NL82 480 492 TSR1 Pre-rRNA-processing protein TSR1 homolog yes yes 2 0.0016345 59.84 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6366200 6366200 0 0 0 0 6366200 6366200 0 6914 1529 7069 25279 38215 38215 705 1 LEEQLENLIEFIR GDFDWVIENHGVEQRLEEQLENLIEFIRSR QRLEEQLENLIEFIRSRL____________ R L E I R S 0 1 1 0 0 1 4 0 0 2 3 0 0 1 0 0 0 0 0 0 0 0 13 0 1644.8723 Q6FGV9;Q15126 Q6FGV9 177 189 PMVK Phosphomevalonate kinase yes no 2 9.6586E-05 119.45 2 0.31363 0.43943 NaN 1 Median 0.31363 0.43943 NaN 1 0 Median NaN NaN NaN 0 0 Median 4315400 3992000 323460 4315400 3992000 323460 0 0 0 6915 1506 7070 25280;25281 38216;38217 38216 2 LEEQLQDLDVALK EWFCPPCQHKLLCEKLEEQLQDLDVALKKK EKLEEQLQDLDVALKKKERAERRKERLVYV K L E L K K 1 0 0 2 0 2 2 0 0 0 4 1 0 0 0 0 0 0 0 1 0 0 13 0 1512.8035 Q96T23;H0YCN2;H0YDG9 Q96T23 947 959 RSF1 Remodeling and spacing factor 1 yes no 2 4.971E-22 189.58 2 0.54701 0.69315 9.6071 2 Median 0.54701 0.69315 9.6071 2 0 Median NaN NaN NaN 0 0 Median 16024000 8944800 7079600 16024000 8944800 7079600 0 0 0 6916 1702 7071 25282;25283 38218;38219;38220 38220 3 LEESSTIGQDQTLMER RPLKENPPNKMTQEKLEESSTIGQDQTLME EESSTIGQDQTLMERDTEGGAAEINCNGVI K L E E R D 0 1 0 1 0 2 3 1 0 1 2 0 1 0 0 2 2 0 0 0 0 0 16 0 1835.8571 Q96SB4;A0A024RCU9;A8K8B2;H3BLV9;D6RBF8 Q96SB4 330 345 SRPK1 SRSF protein kinase 1 yes no 2 5.5815E-07 76.357 2 3.0185 4.2921 4.1853 2 Median NaN NaN NaN 0 0 Median 3.0185 4.2921 4.1853 2 0 Median 17574000 4625500 12948000 0 0 0 17574000 4625500 12948000 6917 1699 7072 25284;25285 38221;38222 38222 764 2 LEGLEDALQK AEQRGEMALKDAKNKLEGLEDALQKAKQDL DAKNKLEGLEDALQKAKQDLARLLKEYQEL K L E Q K A 1 0 0 1 0 1 2 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1114.587 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;B4DRY0;CON__P04259;B4DKV4 B4DRR0 398 407 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 0.0083197 64.654 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7929500 7929500 0 0 0 0 7929500 7929500 0 + 6918 459;953 7073 25286 38223 38223 1 LEGLGSSEADQDGLASTVR KSQEHEQRLAALQGRLEGLGSSEADQDGLA GSSEADQDGLASTVRSLGETQLVLYGDVEE R L E V R S 2 1 0 2 0 1 2 3 0 0 3 0 0 0 0 3 1 0 0 1 0 0 19 0 1903.9123 B3KVX6;Q8TB01;Q6NWZ1;A0A024RBH2;Q07065 B3KVX6 374 392 CKAP4 Cytoskeleton-associated protein 4 yes no 2 4.4733E-05 110.98 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2350000 2350000 0 2350000 2350000 0 0 0 0 6919 272 7074 25287;25288 38224;38225 38224 2 LEGLTDEINFLR DVDEAYMNKVELESRLEGLTDEINFLRQLY ESRLEGLTDEINFLRQLYEEEIRELQSQIS R L E L R Q 0 1 1 1 0 0 2 1 0 1 3 0 0 1 0 0 1 0 0 0 0 0 12 0 1418.7405 CON__P05787;P05787;Q969I0;F8VUG2;Q7L4M3;CON__H-INV:HIT000292931;F8VP67;F8W1U3 CON__P05787 214 225 KRT8 Keratin, type II cytoskeletal 8 no no 2 8.086E-32 206.43 5 2 0.21491 0.2923 115.42 7 Median 0.21054 0.2888 5.4895 5 0 Median 1.902 3.1333 2.7815 2 0 Median 1612400000 1141300000 471170000 1245500000 1010000000 235480000 366910000 131220000 235690000 + 6920 955;1068 7075 25289;25290;25291;25292;25293;25294;25295 38226;38227;38228;38229;38230;38231;38232;38233;38234;38235;38236;38237;38238 38230 12 LEGLVLTHQQFSSYEPELFPGLIYR IQNMVGSCDVKFPIRLEGLVLTHQQFSSYE FSSYEPELFPGLIYRMIKPRIVLLIFVSGK R L E Y R M 0 1 0 0 0 2 3 2 1 1 5 0 0 2 2 2 1 0 2 1 0 0 25 0 2935.512 Q32MN6;B4DPC1;Q32MN7;P20226;Q6SJ96 Q32MN6 219 243 TBP;TBPL2 TATA-box-binding protein;TATA box-binding protein-like protein 2 yes no 3 0.0079475 55.846 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1865800 1865800 0 1865800 1865800 0 0 0 0 6921 845 7076 25296 38239 38239 1 LEGTEDLSDVLVR AFACLLHLANEKNLKLEGTEDLSDVLVRQG LKLEGTEDLSDVLVRQGD____________ K L E V R Q 0 1 0 2 0 0 2 1 0 0 3 0 0 0 0 1 1 0 0 2 0 0 13 0 1444.7409 Q15003;B4DRG7;E9PHA2;A8K4T8;H7C415 Q15003 726 738 NCAPH Condensin complex subunit 2 yes no 2 5.4962E-13 164.33 4 2 0.60192 0.8543 3.532 6 Median 0.61893 0.85559 4.4853 4 0 Median 0.51891 0.8543 1.4216 2 0 Median 697500000 438940000 258550000 358900000 213870000 145030000 338600000 225070000 113520000 6922 1500 7077 25297;25298;25299;25300;25301;25302 38240;38241;38242;38243;38244;38245;38246;38247;38248;38249;38250;38251;38252;38253;38254;38255;38256;38257 38240 18 LEGVLAEVAQHYQDTLIR DAQKTLQALQIPAAKLEGVLAEVAQHYQDT VLAEVAQHYQDTLIRAKREKAQEIQDESAV K L E I R A 2 1 0 1 0 2 2 1 1 1 3 0 0 0 0 0 1 0 1 2 0 0 18 0 2054.0797 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;Q6P1N4 A4QPB0 568 585 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 3 5.2945E-19 142.91 4 0.57682 0.76063 8.1087 3 Median 0.57682 0.76063 8.1087 3 0 Median NaN NaN NaN 0 0 Median 35793000 28560000 7233600 35793000 28560000 7233600 0 0 0 6923 287 7078 25303;25304;25305;25306 38258;38259;38260;38261 38258 4 LEHDVNIQFPDKDDGNQPQDQITITGYEK PKIIGRKGAVITQIRLEHDVNIQFPDKDDG GNQPQDQITITGYEKNTEAARDAILRIVGE R L E E K N 0 0 2 5 0 4 2 2 1 3 1 2 0 1 2 0 2 0 1 1 0 0 29 1 3356.5797 B2R5V9;A0A024R4E5;Q00341;Q96CF6;Q2HJC8 B2R5V9 1080 1108 HDLBP Vigilin yes no 4 9.1512E-05 56.631 2 0.69133 0.85698 NaN 1 Median 0.69133 0.85698 NaN 1 0 Median NaN NaN NaN 0 0 Median 13574000 9374300 4199600 13574000 9374300 4199600 0 0 0 6924 122 7079 25307;25308 38262;38263;38264 38264 3 LEIDLLK REKLTSKEECLSSQKLEIDLLKSSKEELNN EECLSSQKLEIDLLKSSKEELNNSLKATTQ K L E L K S 0 0 0 1 0 0 1 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 7 0 842.51132 P49454;Q9UHT7;A0A087WTY4;G0ZI12;E9PDD2;Q53FL7;P19320 P49454 2840 2846 CENPF;VCAM1 Centromere protein F;Vascular cell adhesion protein 1 yes no 2 0.016338 72.138 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3540500 3540500 0 3540500 3540500 0 0 0 0 6925 1351 7080 25309;25310 38265;38266 38265 2 LEILQQQLQVANEAR ALKQLEALEKEKAAKLEILQQQLQVANEAR LEILQQQLQVANEARDSAQTSVTQAQREKA K L E A R D 2 1 1 0 0 4 2 0 0 1 3 0 0 0 0 0 0 0 0 1 0 0 15 0 1751.953 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 617 631 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 2.9357E-33 193 4 2 0.63818 0.85751 31.345 6 Median 0.64513 0.86493 3.8641 4 0 Median 0.29772 0.48011 2.5882 2 0 Median 198500000 133740000 64764000 94112000 54811000 39301000 104390000 78930000 25462000 6926 148;1499;590 7081 25311;25312;25313;25314;25315;25316 38267;38268;38269;38270;38271;38272;38273;38274;38275;38276;38277;38278;38279 38269 13 LEINFEELLK EMYKTISQEFLTPGKLEINFEELLKQKMEE LTPGKLEINFEELLKQKMEEEKRRTEEERK K L E L K Q 0 0 1 0 0 0 3 0 0 1 3 1 0 1 0 0 0 0 0 0 0 0 10 0 1246.6809 B4DDI0;H7BXY5;D3DQ79;Q0ZGT2;E7ETM8;E7EUA0;B4DUN9 B4DDI0 87 96 NEXN Nexilin yes no 2 4.2621E-08 131.44 4 2.6644 3.2988 17.463 3 Median 2.6644 3.2988 17.463 3 0 Median NaN NaN NaN 0 0 Median 6572900 1986700 4586200 6572900 1986700 4586200 0 0 0 6927 794 7082 25317;25318;25319;25320 38280;38281;38282;38283 38283 3 LEIYVQSK RDPITTAGQPLPGERLEIYVQSKMDEKNAH QPLPGERLEIYVQSKMDEKNAHIPSESIAC R L E S K M 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 1 0 0 1 1 0 0 8 0 978.5386 A0A1B0GUH9;A0A1P0AZG4;A0PJI9 A0A1B0GUH9 918 925 C10orf12 yes no 2 0.044757 43.808 1 0.84842 1.1182 NaN 1 Median NaN NaN NaN 0 0 Median 0.84842 1.1182 NaN 1 0 Median 2073100 990450 1082700 0 0 0 2073100 990450 1082700 6928 517 7083 25321 38284 38284 1 LEIYVVTAEGLRPVK TSAEDLNLLIAKNTRLEIYVVTAEGLRPVK LEIYVVTAEGLRPVKEVGMYGKIAVMELFR R L E V K E 1 1 0 0 0 0 2 1 0 1 2 1 0 0 1 0 1 0 1 3 0 0 15 1 1685.9716 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5;F5GZY8;F5GYG8;F5H198 Q16531 39 53 DDB1 DNA damage-binding protein 1 yes no 2;3 7.7596E-07 109.6 6 2 0.84053 1.1623 15.743 8 Median 0.84053 1.1267 8.827 6 0 Median 0.81001 1.3841 26.688 2 0 Median 298700000 161880000 136810000 212500000 115680000 96820000 86193000 46200000 39993000 6929 1520 7084 25322;25323;25324;25325;25326;25327;25328;25329 38285;38286;38287;38288;38289;38290;38291;38292;38293;38294;38295;38296;38297 38292 13 LEKPNEGYLEFFVDCSASATPEFEGR TDILVGVKAEMGTPKLEKPNEGYLEFFVDC FVDCSASATPEFEGRGGDDLGTEIANTLYR K L E G R G 2 1 1 1 1 0 5 2 0 0 2 1 0 3 2 2 1 0 1 1 0 0 26 1 2991.3597 B2RDZ9;A0A024R2P7;Q15024;B4DIU0 B2RDZ9 71 96 EXOSC7 Exosome complex component RRP42 yes no 3 0.00099877 48.84 2 0.71635 0.95713 31.792 2 Median 0.71635 0.95713 31.792 2 0 Median NaN NaN NaN 0 0 Median 12440000 6001900 6437700 12440000 6001900 6437700 0 0 0 6930 91 7085 25330;25331 38298;38299 38298 2 LELDALR QQEVEKLARENSSMRLELDALRSKYEALQT ARENSSMRLELDALRSKYEALQTFARTVAR R L E L R S 1 1 0 1 0 0 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 7 0 828.47052 A0A024R804;A8WFP5;O60675;Q9ULX9;B0QY70;B0QY71;A0A024R8X1;O15525 A0A024R804 102 108 MAFK;MAFF;hCG_1991559;MAFG Transcription factor MafK;Transcription factor MafF;Transcription factor MafG no no 2 0.0045539 137.83 4 2 1.1652 1.6882 9.0261 6 Median 1.1794 1.6193 8.1222 4 0 Median 1.1134 1.8153 3.1348 2 0 Median 450380000 201640000 248740000 291950000 126900000 165060000 158430000 74743000 83685000 6931 188;1793;207 7086 25332;25333;25334;25335;25336;25337 38300;38301;38302;38303;38304;38305;38306;38307;38308 38301 9 LELEENQMK LKYYTGNYDQYVKTRLELEENQMKRFHWEQ QYVKTRLELEENQMKRFHWEQDQIAHMKNY R L E M K R 0 0 1 0 0 1 3 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 9 0 1132.5434 A0A090N7X1;A0A090N7Y2;Q9UG63 A0A090N7X1 318 326 ABCF2 ATP-binding cassette sub-family F member 2 yes no 2 0.0097307 54.157 2 0.73509 0.92982 11.138 2 Median 0.73509 0.92982 11.138 2 0 Median NaN NaN NaN 0 0 Median 27764000 16889000 10875000 27764000 16889000 10875000 0 0 0 6932 380 7087 25338;25339 38309;38310;38311 38309 124 3 LELELK QLISLPMWMGLQLARLELELKKTPKLRKFW MWMGLQLARLELELKKTPKLRKFWNLIKKN R L E L K K 0 0 0 0 0 0 2 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 6 0 743.44291 B0AZM4;A8K6F0;A0A024R9L1;O60306;H0YH15 B0AZM4 183 188 AQR Intron-binding protein aquarius yes no 2 0.019661 132.8 2 0.75729 0.96381 3.8097 2 Median 0.75729 0.96381 3.8097 2 0 Median NaN NaN NaN 0 0 Median 39228000 21390000 17838000 39228000 21390000 17838000 0 0 0 6933 226 7088 25340;25341 38312;38313;38314 38314 3 LELEQTYQAK EELRSQHDEQVRLYKLELEQTYQAKLDSAK VRLYKLELEQTYQAKLDSAKLSSDQNDKAA K L E A K L 1 0 0 0 0 2 2 0 0 0 2 1 0 0 0 0 1 0 1 0 0 0 10 0 1221.6241 Q03252;A0A0A7M1X5 Q03252 276 285 LMNB2 Lamin-B2 yes no 2 6.0504E-06 114.64 2 1 0.8261 1.0001 55.237 3 Median 0.76317 0.94057 8.6749 2 0 Median 1.8388 2.434 NaN 1 0 Median 29055000 15176000 13878000 26208000 14185000 12023000 2846400 991010 1855400 6934 1440 7089 25342;25343;25344 38315;38316;38317;38318;38319 38317 5 LELFPVELEK MAASAEYELEKRVERLELFPVELEKDSEGL KRVERLELFPVELEKDSEGLGISIIGMGAG R L E E K D 0 0 0 0 0 0 3 0 0 0 3 1 0 1 1 0 0 0 0 1 0 0 10 0 1215.6751 D3DTX6;Q96SB3 D3DTX6 492 501 PPP1R9B Neurabin-2 no no 2 0.016635 48.283 1 0.92611 1.1663 NaN 1 Median 0.92611 1.1663 NaN 1 0 Median NaN NaN NaN 0 0 Median 8933200 4771200 4162000 8933200 4771200 4162000 0 0 0 6935 980 7090 25345 38320 38320 1 LELLLQK EAERNKMIGKRANERLELLLQKRKELQENQ IGKRANERLELLLQKRKELQENQDEIENMM R L E Q K R 0 0 0 0 0 1 1 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 7 0 855.54295 B2R8Y6;Q6MZM4;Q6MZM3;Q6MZP3;Q8N3U4;Q6AI02;B1AMT4;Q68DW7;Q4LE48;Q8WVM7 B2R8Y6 195 201 DKFZp686P16143;DKFZp686C21148;DKFZp686I05169;STAG2;DKFZp686P168;DKFZp781D1416;STAG1 variant protein;STAG1 Cohesin subunit SA-2;Cohesin subunit SA-1 yes no 2 0.032699 60.788 1 0.57282 0.70942 NaN 1 Median 0.57282 0.70942 NaN 1 0 Median NaN NaN NaN 0 0 Median 2684700 1854800 829870 2684700 1854800 829870 0 0 0 6936 717 7091 25346 38321 38321 1 LELQFPR PGGGSKTSLSFQDPKLELQFPRTPEGRRLG SLSFQDPKLELQFPRTPEGRRLGSLLPVLS K L E P R T 0 1 0 0 0 1 1 0 0 0 2 0 0 1 1 0 0 0 0 0 0 0 7 0 901.50215 D3DVC4;P48681;Q05BW3;A5PKT9 D3DVC4 331 337 NES Nestin yes no 2 0.011892 79.454 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6937 986 7092 25347 38322 38322 1 LELQGPR LNSCNKREIEGRAIRLELQGPRGSPNAGSQ EIEGRAIRLELQGPRGSPNAGSQPSKTLFV R L E P R G 0 1 0 0 0 1 1 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 7 0 811.4552 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99;Q9BQ02;H7BY16 B3KTP9 478 484 NCL Nucleolin yes no 2 0.019508 101.33 3 2 0.82691 1.2983 13.337 4 Median 0.93229 1.2789 23.048 2 0 Median 0.82691 1.2983 0.40667 2 0 Median 154910000 81508000 73400000 94069000 49697000 44371000 60839000 31811000 29029000 6938 119 7093 25348;25349;25350;25351;25352 38323;38324;38325;38326;38327;38328;38329;38330 38324 8 LELSDNIISGGLEVLAEK LSSLARLPSLNKLRKLELSDNIISGGLEVL SDNIISGGLEVLAEKCPNLTYLNLSGNKIK K L E E K C 1 0 1 1 0 0 3 2 0 2 4 1 0 0 0 2 0 0 0 1 0 0 18 0 1899.0201 Q53F20;Q9BTT0;Q5TB19;B4E0D5;E9PLC4 Q53F20 69 86 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 2 3.241E-09 83.499 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5828800 5828800 0 5828800 5828800 0 0 0 0 6939 1538 7094 25353;25354 38331;38332 38331 2 LELSVHLQPITR KMGKTIHKYVHLFPKLELSVHLQPITRSTL FPKLELSVHLQPITRSTLKVELTITPDFQW K L E T R S 0 1 0 0 0 1 1 0 1 1 3 0 0 0 1 1 1 0 0 1 0 0 12 0 1404.8089 O75643;A4FU77 O75643 1184 1195 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 1.1958E-05 71.241 1 1 0.60573 0.81111 NaN 1 Median 0.60573 0.81111 NaN 1 0 Median NaN NaN NaN 0 0 Median 16893000 8432000 8460500 16893000 8432000 8460500 0 0 0 6940 1206 7095 25355;25356 38333;38334;38335 38335 3 LENDQIESLR PAGHQIGTVSPLFQRLENDQIESLRQRFGG PLFQRLENDQIESLRQRFGGGQAKTSPKPA R L E L R Q 0 1 1 1 0 1 2 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1215.6095 A8K492;P56192;B4DF61;H0YHL6;H0YI94;H0YI27;H0YIP0 A8K492 805 814 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 0.0027477 106.88 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10409000 0 10409000 1814400 0 1814400 8594200 0 8594200 6941 602 7096 25357;25358;25359 38336;38337;38338 38338 3 LENEIQTYR CQNTEYQQLLDIKIRLENEIQTYRSLLEGE LDIKIRLENEIQTYRSLLEGEGSSGGGGRG R L E Y R S 0 1 1 0 0 1 2 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 9 0 1164.5775 CON__P13645;P13645;CON__P02535-1 CON__P13645 442 450 KRT10 Keratin, type I cytoskeletal 10 yes no 2 3.8389E-59 182.53 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22215000 22215000 0 0 0 0 22215000 22215000 0 + 6942 960 7097 25360;25361;25362 38339;38340;38341 38339 3 LENINGVTDGYLNSLCTVR KYCYLQNEVFGLFQKLENINGVTDGYLNSL NGVTDGYLNSLCTVRALLQAILQTEDMLKV K L E V R A 0 1 3 1 1 0 1 2 0 1 3 0 0 0 0 1 2 0 1 2 0 0 19 0 2137.0474 P15924;Q4LE79;B4E2A0;B4DKX6;B4DWT7 P15924 753 771 DSP;DSP variant protein Desmoplakin yes no 2 0.00027739 47.774 1 0.31773 0.43814 NaN 1 Median 0.31773 0.43814 NaN 1 0 Median NaN NaN NaN 0 0 Median 2778400 2035900 742440 2778400 2035900 742440 0 0 0 6943 1270 7098 25363 38342 38342 1 LENYFEELLK EFNEPDSEVANAGIKLENYFEELLKNLYPE NAGIKLENYFEELLKNLYPEKRFPKPEFRN K L E L K N 0 0 1 0 0 0 3 0 0 0 3 1 0 1 0 0 0 0 1 0 0 0 10 0 1296.6602 A0A024R784;O15164;B4DYZ9 A0A024R784 959 968 TRIM24 Transcription intermediary factor 1-alpha yes no 2 0.00012752 130.98 2 0.46291 0.60323 NaN 1 Median 0.46291 0.60323 NaN 1 0 Median NaN NaN NaN 0 0 Median 2898400 2131600 766880 2898400 2131600 766880 0 0 0 6944 171 7099 25364;25365 38343;38344 38343 2 LENYFIPEFNLFSSNLIDKR DNCVTYFLQCLRTEKLENYFIPEFNLFSSN IPEFNLFSSNLIDKRSKEFLTKQIEYERNN K L E K R S 0 1 3 1 0 0 2 0 0 2 3 1 0 3 1 2 0 0 1 0 0 0 20 1 2458.2533 Q8N884 Q8N884 480 499 MB21D1 Cyclic GMP-AMP synthase yes yes 3 6.3064E-14 105.96 4 1.0815 1.4194 4.3157 4 Median 1.0815 1.4194 4.3157 4 0 Median NaN NaN NaN 0 0 Median 132550000 63113000 69435000 132550000 63113000 69435000 0 0 0 6945 1643 7100 25366;25367;25368;25369 38345;38346;38347;38348;38349;38350;38351;38352 38350 8 LEPANEEHNVETAEDSEIR TQACLASKHVQEAPRLEPANEEHNVETAED NEEHNVETAEDSEIRYLSADSGDADDSDAD R L E I R Y 2 1 2 1 0 0 6 0 1 1 1 0 0 0 1 1 1 0 0 1 0 0 19 0 2180.9822 B4DZG2;A0A024R8C1;Q15361 B4DZG2 457 475 TTF1 Transcription termination factor 1 yes no 3 7.3776E-18 78.794 3 2 0.94058 1.2762 38.547 2 Median 0.94058 1.2762 38.547 2 0 Median NaN NaN NaN 0 0 Median 39763000 29787000 9976100 26497000 16521000 9976100 13265000 13265000 0 6946 195 7101 25370;25371;25372;25373;25374 38353;38354;38355;38356;38357;38358;38359 38356 7 LEPIETNQNAVFQYISR EAIYPSVDKREYIIKLEPIETNQNAVFQYI PIETNQNAVFQYISRTDNPIEVTESSSTPE K L E S R T 1 1 2 0 0 2 2 0 0 2 1 0 0 1 1 1 1 0 1 1 0 0 17 0 2021.0218 Q2TB10;B7Z4V7;C9JHX9;A0A087WXB4;Q49A13;Q4G0T8 Q2TB10 133 149 ZNF800 Zinc finger protein 800 yes no 2 5.4311E-43 201.08 4 1 0.83332 1.1213 4.7526 4 Median 0.83332 1.1213 4.7526 4 0 Median NaN NaN NaN 0 0 Median 60898000 31649000 29249000 55858000 31649000 24209000 5040200 0 5040200 6947 1530 7102 25375;25376;25377;25378;25379 38360;38361;38362;38363;38364;38365;38366;38367;38368;38369 38364 10 LEPSTSTDQPVTPEPTSQATR SSGKTPETLVPTAPKLEPSTSTDQPVTPEP TDQPVTPEPTSQATRGRTNRSSVKTPETVV K L E T R G 1 1 0 1 0 2 2 0 0 0 1 0 0 0 4 3 5 0 0 1 0 0 21 0 2241.0761 Q14676;B4DYH4 Q14676 1414 1434 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 2 0.0022854 104.16 2 0.62439 0.84457 NaN 1 Median 0.62439 0.84457 NaN 1 0 Median NaN NaN NaN 0 0 Median 4530800 3068900 1461900 4530800 3068900 1461900 0 0 0 6948 1491 7103 25380;25381 38370;38371 38370 2 LEPTNVQTVTCSPR LSRALNKAKNSSDAKLEPTNVQTVTCSPRV KLEPTNVQTVTCSPRVKALPLSPRKRLGDD K L E P R V 0 1 1 0 1 1 1 0 0 0 1 0 0 0 2 1 3 0 0 2 0 0 14 0 1600.7879 B2R935;A0A024R1S2;Q99741;J3KTI7;J3QR52;J3QLN7 B2R935 34 47 CDC6 Cell division control protein 6 homolog yes no 2 0.0024046 84.605 2 0.47935 0.66579 NaN 1 Median 0.47935 0.66579 NaN 1 0 Median NaN NaN NaN 0 0 Median 6454900 4396400 2058500 6454900 4396400 2058500 0 0 0 6949 64 7104 25382;25383 38372;38373;38374 38374 3 LEQCEVPEREEQEQQAEVSKPTPTPEGTSQDVTTVTLLLR NSGSREDSKGLAAHRLEQCEVPEREEQEQQ EGTSQDVTTVTLLLRAPPGSTSSSPASPSS R L E L R A 1 2 0 1 1 5 8 1 0 0 4 1 0 0 4 2 6 0 0 4 0 0 40 2 4551.2286 Q59F18;B3KY54;B3KUD6;B4E229;B4DI56;A0A087WVP4;A0A087X1R1;P53814 Q59F18 91 130 SMTN Smoothelin yes no 4 0.038129 3.5358 1 0.63821 0.78121 NaN 1 Median 0.63821 0.78121 NaN 1 0 Median NaN NaN NaN 0 0 Median 5602300 3266900 2335400 5602300 3266900 2335400 0 0 0 6950 349 7105 25384 38375;38376;38377 38375 3 LEQDEYALR GHSADRLAAAFAVSRLEQDEYALRSHSLAK AFAVSRLEQDEYALRSHSLAKKAQDEGLLS R L E L R S 1 1 0 1 0 1 2 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 9 0 1135.551 P55084;D6W539;B4DY96;F5GZQ3;B4DDC9 P55084 239 247 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 5.1451E-05 136.16 2 1 0.73461 1.0825 NaN 1 Median NaN NaN NaN 0 0 Median 0.73461 1.0825 NaN 1 0 Median 14398000 10759000 3639200 6513400 6513400 0 7884700 4245500 3639200 6951 1378 7106 25385;25386;25387 38378;38379;38380 38379 3 LEQEIATYR QQNQEYKILLDVKTRLEQEIATYRRLLEGE LDVKTRLEQEIATYRRLLEGEDAHLSSSQF R L E Y R R 1 1 0 0 0 1 2 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 9 0 1121.5717 CON__P02533;P02533;A0A024R1X6;CON__A2A4G1;Q13092;CON__Q61782;A8MT21;CON__P35900;CON__Q9D312;P35900;CON__Q8N1A0;Q8N1A0;CON__Q04695;Q04695;F5GWP8;CON__Q9QWL7;Q14666;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8 CON__P02533 408 416 KRT14;K14;KRT15;KRT20;KRT222;KRT17;KRT16 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 20;Keratin-like protein KRT222;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 16 no no 2 0.00011017 117.89 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12612000 12612000 0 2071200 2071200 0 10540000 10540000 0 + 6952 949;958;965 7107 25388;25389;25390;25391 38381;38382;38383;38384;38385 38383 5 LEQELFSGGNTGINFEK SDEDDWSKPLPPSERLEQELFSGGNTGINF QELFSGGNTGINFEKYDDIPVEATGNNCPP R L E E K Y 0 0 2 0 0 1 3 3 0 1 2 1 0 2 0 1 1 0 0 0 0 0 17 0 1881.9109 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;A0A024R9A4;O15523;B4DLU5;B4E010;C9J8G5;C9J081;B4E3C4;A0A0J9YYH6 A0A0D9SFB3 146 162 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 1.121E-60 228.17 4 2 0.5251 0.65391 96.096 6 Median 0.48333 0.60061 8.709 4 0 Median 2.5729 3.9084 11.726 2 0 Median 107650000 55435000 52211000 65574000 44062000 21512000 42072000 11374000 30699000 6953 432 7108 25392;25393;25394;25395;25396;25397 38386;38387;38388;38389;38390;38391;38392;38393;38394;38395;38396 38387 11 LEQGGTADGLR KYDEELEGERPHSFRLEQGGTADGLREREL HSFRLEQGGTADGLRERELEEIRAKLRLQA R L E L R E 1 1 0 1 0 1 1 3 0 0 2 0 0 0 0 0 1 0 0 0 0 0 11 0 1115.5571 O43290;B4DDH9 O43290 351 361 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes no 2 1.2776E-05 81.338 2 1 1.0197 1.344 NaN 1 Median NaN NaN NaN 0 0 Median 1.0197 1.344 NaN 1 0 Median 3399800 1149300 2250500 985450 0 985450 2414300 1149300 1265000 6954 1184 7109 25398;25399;25400 38397;38398;38399 38398 3 LEQGQAIDDLMPAQK MVVDGVKLLIEMEQRLEQGQAIDDLMPAQK LEQGQAIDDLMPAQK_______________ R L E Q K - 2 0 0 2 0 3 1 1 0 1 2 1 1 0 1 0 0 0 0 0 0 0 15 0 1655.8189 V9HWH2;V9HW77;A0A0S2Z471;P12277;B4DP56;H0YJG0 V9HWH2 367 381 HEL-S-29;HEL-211;CKB Creatine kinase B-type yes no 2 0.013369 44.367 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2669400 0 2669400 0 0 0 2669400 0 2669400 6955 460 7110 25401 38400 38400 162 1 LEQIAAEQK ELTQIKSNIDALLSRLEQIAAEQKANPDGK DALLSRLEQIAAEQKANPDGKKKGDGGGAS R L E Q K A 2 0 0 0 0 2 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 9 0 1028.5502 A8K4T9;Q53GL6;Q9UKM9;Q5QPL9;Q5QPM0 A8K4T9 192 200 RALY RNA-binding protein Raly yes no 2 0.0031015 79.906 2 2 0.82346 1.0456 NaN 1 Median 0.82346 1.0456 NaN 1 0 Median NaN NaN NaN 0 0 Median 35962000 28543000 7419000 31296000 25547000 5749200 4665600 2995700 1669800 6956 608 7111 25402;25403;25404;25405 38401;38402;38403;38404 38401 4 LEQIDGHIAEHNSK NEHALQKDALSIKLKLEQIDGHIAEHNSKI KLEQIDGHIAEHNSKIKYWHKEISKISLHP K L E S K I 1 0 1 1 0 1 2 1 2 2 1 1 0 0 0 1 0 0 0 0 0 0 14 0 1589.7798 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1018 1031 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 4.5512E-50 217.46 7 4 0.6866 0.86535 9.4025 11 Median 0.68774 0.86535 5.2983 7 0 Median 0.58325 0.87475 14.944 4 0 Median 313960000 184160000 129790000 283170000 165620000 117550000 30788000 18543000 12246000 6957 1760 7112 25406;25407;25408;25409;25410;25411;25412;25413;25414;25415;25416 38405;38406;38407;38408;38409;38410;38411;38412;38413;38414;38415;38416;38417;38418;38419;38420;38421;38422;38423 38409 19 LEQLFQDEVAK SLLQRERFIEQEKAKLEQLFQDEVAKAQQL EKAKLEQLFQDEVAKAQQLREEQQRQQQQM K L E A K A 1 0 0 1 0 2 2 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 11 0 1318.6769 Q15149;D3DWL0;H0YDN1 Q15149 2653 2663 PLEC;PLEC1 Plectin yes no 2 5.5965E-07 144.65 4 1.0025 1.2712 14.638 3 Median 1.0025 1.2712 14.638 3 0 Median NaN NaN NaN 0 0 Median 20654000 10258000 10396000 20654000 10258000 10396000 0 0 0 6958 1507 7113 25417;25418;25419;25420 38424;38425;38426;38427;38428;38429;38430 38426 7 LEQPDLSSEMSK PDQRRLPPEQESLSRLEQPDLSSEMSKVSK LSRLEQPDLSSEMSKVSKPRASKPGRKRGG R L E S K V 0 0 0 1 0 1 2 0 0 0 2 1 1 0 1 3 0 0 0 0 0 0 12 0 1362.6337 Q8WUA4;Q53QN0;A0A087WZD8;C9JNH7 Q8WUA4 79 90 GTF3C2 General transcription factor 3C polypeptide 2 yes no 2 0.0034576 48.998 1 0.857 1.3016 NaN 1 Median NaN NaN NaN 0 0 Median 0.857 1.3016 NaN 1 0 Median 12824000 7393200 5430900 0 0 0 12824000 7393200 5430900 6959 1663 7114 25421 38431 38431 739 1 LERPPETPTVDPTVK EGRPGKKLKKVKLRKLERPPETPTVDPTVK LERPPETPTVDPTVKYERQPEYLDATGGTL K L E V K Y 0 1 0 1 0 0 2 0 0 0 1 1 0 0 4 0 3 0 0 2 0 0 15 1 1677.8938 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 671 685 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 0.0079757 59.513 1 0.97909 1.3127 NaN 1 Median 0.97909 1.3127 NaN 1 0 Median NaN NaN NaN 0 0 Median 7455600 3298300 4157300 7455600 3298300 4157300 0 0 0 6960 428 7115 25422 38432 38432 1 LESDYEILER RLLILMEARLSALYKLESDYEILERFPGAY SALYKLESDYEILERFPGAYLKGKKYRPLF K L E E R F 0 1 0 1 0 0 3 0 0 1 2 0 0 0 0 1 0 0 1 0 0 0 10 0 1265.6139 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z355;Q7Z3U5;B4DVX2;Q6P0M4;Q5TCD1 Q59G75 286 295 IARS;DKFZp686L17145;DKFZp686L0869 Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.00037082 88.495 2 0.63493 0.86082 15.939 2 Median 0.63493 0.86082 15.939 2 0 Median NaN NaN NaN 0 0 Median 13212000 7484200 5728100 13212000 7484200 5728100 0 0 0 6961 1334 7116 25423;25424 38433;38434 38434 2 LESEEEGVPSTAIR RHKTTGQVVAMKKIRLESEEEGVPSTAIRE RLESEEEGVPSTAIREISLLKELRHPNIVS R L E I R E 1 1 0 0 0 0 4 1 0 1 1 0 0 0 1 2 1 0 0 1 0 0 14 0 1515.7417 A0A024QZP7;P06493;Q5H9N4;A0A087WZZ9;I6L9I5;E5RIU6;A0A024QZJ8;B7Z3D6 A0A024QZP7 37 50 CDC2;CDK1;DKFZp686L20222 Cyclin-dependent kinase 1 yes no 2 2.8315E-11 108.9 2 0.99247 1.5571 1.5183 2 Median NaN NaN NaN 0 0 Median 0.99247 1.5571 1.5183 2 0 Median 58385000 27804000 30581000 0 0 0 58385000 27804000 30581000 6962 18 7117 25425;25426 38435;38436;38437;38438 38436 4 LESEHPDQAQAILSR AIEAKLSDLQKEAEKLESEHPDQAQAILSR LESEHPDQAQAILSRLAEISDVWEEMKTTL K L E S R L 2 1 0 1 0 2 2 0 1 1 2 0 0 0 1 2 0 0 0 0 0 0 15 0 1692.8431 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24 B2ZZ89 1022 1036 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 4.4709E-06 74.89 2 0.83987 1.1507 1.9777 2 Median 0.83987 1.1507 1.9777 2 0 Median NaN NaN NaN 0 0 Median 79949000 42632000 37317000 79949000 42632000 37317000 0 0 0 6963 346 7118 25427;25428 38439;38440;38441 38441 3 LESELANFGPR TKTRHLALNLQEKSKLESELANFGPRINDI EKSKLESELANFGPRINDIKRIIQSREREM K L E P R I 1 1 1 0 0 0 2 1 0 0 2 0 0 1 1 1 0 0 0 0 0 0 11 0 1231.6197 Q14683;G8JLG1;Q6P2R1;Q6MZR8;A8K7A6 Q14683 737 747 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.04619 45.368 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 6964 1492 7119 25429 38442 38442 1 LESGMQNMSIHTK EIATYRKLLEGEESRLESGMQNMSIHTKTT SRLESGMQNMSIHTKTTSGYAGGLSSAYGG R L E T K T 0 0 1 0 0 1 1 1 1 1 1 1 2 0 0 2 1 0 0 0 0 0 13 0 1474.6908 CON__P05787;P05787;Q969I0;Q7L4M3;CON__REFSEQ:XP_092267 CON__P05787 402 414 KRT8 Keratin, type II cytoskeletal 8 yes no 3 0.048568 47.621 1 1.5546 2.114 NaN 1 Median NaN NaN NaN 0 0 Median 1.5546 2.114 NaN 1 0 Median 3413300 1431200 1982000 0 0 0 3413300 1431200 1982000 + 6965 955 7120 25430 38443 38443 1 LESLSAATTFEPLEPVK LLGSRGLDISHISQRLESLSAATTFEPLEP SLSAATTFEPLEPVKDTDIQGFLKNEKDNA R L E V K D 2 0 0 0 0 0 3 0 0 0 3 1 0 1 2 2 2 0 0 1 0 0 17 0 1830.9615 H3BVG0;Q8N1F7;H3BV11;H3BRI8;H3BM93;H3BNN5 H3BVG0 78 94 NUP93 Nuclear pore complex protein Nup93 yes no 2 1.9786E-10 143.31 4 0.26393 0.33247 NaN 1 Median 0.26393 0.33247 NaN 1 0 Median NaN NaN NaN 0 0 Median 15152000 14613000 538290 15152000 14613000 538290 0 0 0 6966 1111 7121 25431;25432;25433;25434 38444;38445;38446;38447;38448 38445 5 LESLSYQLSGLQK AASAAREELKEARMRLESLSYQLSGLQKQA MRLESLSYQLSGLQKQASAAEDRIRELEEA R L E Q K Q 0 0 0 0 0 2 1 1 0 0 4 1 0 0 0 3 0 0 1 0 0 0 13 0 1464.7824 Q03252;A0A0A7M1X5 Q03252 314 326 LMNB2 Lamin-B2 yes no 2 0.00024208 96.171 2 0.73034 0.94403 NaN 1 Median 0.73034 0.94403 NaN 1 0 Median NaN NaN NaN 0 0 Median 4711200 2355400 2355700 4711200 2355400 2355700 0 0 0 6967 1440 7122 25435;25436 38449;38450;38451 38451 3 LESNNYNTYR LASKCVTDECFFFERLESNNYNTYRSRKYT FFFERLESNNYNTYRSRKYTSWYVALKRTG R L E Y R S 0 1 3 0 0 0 1 0 0 0 1 0 0 0 0 1 1 0 2 0 0 0 10 0 1272.5735 D9ZGF5;A0A087WUF6;P09038 D9ZGF5 107 116 FGF2 Fibroblast growth factor;Fibroblast growth factor 2 yes no 2 0.00031964 89.247 1 2 0.5836 0.74584 8.6757 2 Median NaN NaN NaN 0 0 Median 0.5836 0.74584 8.6757 2 0 Median 9512200 5139600 4372600 1369800 0 1369800 8142300 5139600 3002800 6968 343 7123 25437;25438;25439 38452;38453;38454;38455;38456 38453 5 LESPTVSTLTPSSPGK ISPAALKKTLLDRVKLESPTVSTLTPSSPG ESPTVSTLTPSSPGKLLTRSLALGGKKD__ K L E G K L 0 0 0 0 0 0 1 1 0 0 2 1 0 0 3 4 3 0 0 1 0 0 16 0 1599.8356 B3KMB7;A0A087WTV6;A0A024R3Q9;Q4W8W1;A0A087WZR9;A0A0S2Z5U6;Q96C36;Q8NCZ0 B3KMB7 184 199 PYCR2;P5CR2;DKFZp434J218 Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 2 yes no 2 9.2076E-05 59.116 1 0.66362 0.91473 NaN 1 Median NaN NaN NaN 0 0 Median 0.66362 0.91473 NaN 1 0 Median 4110100 2955600 1154500 0 0 0 4110100 2955600 1154500 6969 104 7124 25440 38457 38457 1 LETLGSASTSTPGR RDLEMSKKVRRSYSRLETLGSASTSTPGRR RLETLGSASTSTPGRRSCFGFEGLLGAEDL R L E G R R 1 1 0 0 0 0 1 2 0 0 2 0 0 0 1 3 3 0 0 0 0 0 14 0 1375.6943 A0A024R5D6;B5MBX0;Q96FF9;B3KSI5 A0A024R5D6 149 162 CDCA5 Sororin yes no 2 0.0024997 56.087 2 0.94659 1.2199 10.929 2 Median NaN NaN NaN 0 0 Median 0.94659 1.2199 10.929 2 0 Median 6857000 3645000 3212000 0 0 0 6857000 3645000 3212000 6970 141 7125 25441;25442 38458;38459;38460 38459 3 LETLLQPR PQLGTKTFLSVVLPRLETLLQPRKRSRSTC LSVVLPRLETLLQPRKRSRSTCGDSEVEEE R L E P R K 0 1 0 0 0 1 1 0 0 0 3 0 0 0 1 0 1 0 0 0 0 0 8 0 968.56548 Q86X06;A0A024R4V5;A0A024R4W4;O95696;B7Z926;Q9Y4Q3;B4DZC2;B4DZ41 Q86X06 922 929 BRD1;DKFZp434B094 Bromodomain-containing protein 1 yes no 2 0.0095821 75.189 1 1.1447 1.5148 NaN 1 Median 1.1447 1.5148 NaN 1 0 Median NaN NaN NaN 0 0 Median 9293600 3721000 5572700 9293600 3721000 5572700 0 0 0 6971 128 7126 25443 38461 38461 1 LETLVR TLQEKMAATSKEVARLETLVRKAGEQQETA AATSKEVARLETLVRKAGEQQETASRELVK R L E V R K 0 1 0 0 0 0 1 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 6 0 729.43849 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q7Z757;Q9UPG3;Q4LE64;Q14980 Q4LE64 919 924 NUMA1;NuMA;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.030078 142.53 2 1 0.63555 0.8427 42.583 3 Median 0.67243 0.91113 11.041 2 0 Median 0.293 0.44126 NaN 1 0 Median 34781000 23694000 11088000 18288000 11042000 7246100 16493000 12651000 3841600 6972 148;1499 7127 25444;25445;25446 38462;38463;38464 38462 3 LETNPDIKPSNVEPMEK QQKLDRQKELEKKRKLETNPDIKPSNVEPM TNPDIKPSNVEPMEKEFGLCKTENKAKSGK K L E E K E 0 0 2 1 0 0 3 0 0 1 1 2 1 0 3 1 1 0 0 1 0 0 17 1 1939.9561 A0A024R2Z6;Q9BVP2;C9JZT7;B4DMU5;C9JYH9 A0A024R2Z6 80 96 GNL3 Guanine nucleotide-binding protein-like 3 yes no 3 0.00014524 51.147 2 0.60704 0.96659 4.607 2 Median NaN NaN NaN 0 0 Median 0.60704 0.96659 4.607 2 0 Median 30485000 19910000 10575000 0 0 0 30485000 19910000 10575000 6973 95 7128 25447;25448 38465;38466 38466 55 2 LETSEFFELTSEEK AAFEDNEVQDEFLEKLETSEFFELTSEEKL KLETSEFFELTSEEKLQILTALCHRILMTY K L E E K L 0 0 0 0 0 0 5 0 0 0 2 1 0 2 0 2 2 0 0 0 0 0 14 0 1687.7829 Q9UIG0 Q9UIG0 732 745 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 1.0944E-108 261.75 4 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 165060000 0 165060000 126060000 0 126060000 38993000 0 38993000 6974 1786 7129 25449;25450;25451;25452;25453 38467;38468;38469;38470;38471 38468 5 LETVGSIFSR ______________________________ MAGSRLETVGSIFSRTRDLVRAGVLKEKPL R L E S R T 0 1 0 0 0 0 1 1 0 1 1 0 0 1 0 2 1 0 0 1 0 0 10 0 1107.5924 J3QLR8;Q9Y3D9 J3QLR8 6 15 MRPS23 28S ribosomal protein S23, mitochondrial yes no 2 0.018801 83.998 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1701400 1701400 0 1701400 1701400 0 0 0 0 6975 1141 7130 25454 38472 38472 1 LEVAEAEEEETSIK KSRKLPHSKAKTRSRLEVAEAEEEETSIKA RLEVAEAEEEETSIKAARSELLLAEEPGFL R L E I K A 2 0 0 0 0 0 6 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 14 0 1575.7516 B0UZZ8;B4DNI0;O15213;B4DP15;A8K806;A0A140T9L0;A0A0G2JJL1;H0Y6G3 B0UZZ8 132 145 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2 9.6118E-21 174.24 4 2 0.88499 1.1725 24.241 6 Median 0.90763 1.1525 30.815 4 0 Median 0.8284 1.2463 7.7238 2 0 Median 61588000 31608000 29979000 30811000 14436000 16376000 30777000 17173000 13604000 6976 668 7131 25455;25456;25457;25458;25459;25460 38473;38474;38475;38476;38477;38478;38479;38480;38481;38482;38483;38484;38485 38476 13 LEVAPISDIIAIK ASAFGKNLLPRVAAKLEVAPISDIIAIKSP AKLEVAPISDIIAIKSPDTFVRTIYAGNAL K L E I K S 2 0 0 1 0 0 1 0 0 4 1 1 0 0 1 1 0 0 0 1 0 0 13 0 1380.8228 A0A0S2Z3L0;P13804;H0YL12;H0YKF0;H0YLU7;A0A0S2Z3M4;H0YK49;H0YNX6 A0A0S2Z3L0 127 139 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 2 0.00044116 91.313 2 0.37929 0.47219 NaN 1 Median 0.37929 0.47219 NaN 1 0 Median NaN NaN NaN 0 0 Median 17778000 9572800 8205700 17778000 9572800 8205700 0 0 0 6977 455 7132 25461;25462 38486;38487;38488 38488 3 LEVDEDFEEDNAAK RWETNRMLTSGVVHRLEVDEDFEEDNAAKV RLEVDEDFEEDNAAKVHLMVHNLVPPFLDG R L E A K V 2 0 1 3 0 0 4 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 14 0 1622.6948 B4DM30;B4DET0;A8K6G9;Q92620 B4DM30 64 77 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes no 2 0.016819 33.886 1 0.74146 0.96289 NaN 1 Median 0.74146 0.96289 NaN 1 0 Median NaN NaN NaN 0 0 Median 1592500 926380 666070 1592500 926380 666070 0 0 0 6978 624 7133 25463 38489 38489 1 LEVDVIQER ALQKHVESMRTAVEKLEVDVIQERSRNTVL RTAVEKLEVDVIQERSRNTVLQQHLETLRQ K L E E R S 0 1 0 1 0 1 2 0 0 1 1 0 0 0 0 0 0 0 0 2 0 0 9 0 1099.5873 B4DMG1;Q9NP66;H0YKL0 B4DMG1 154 162 HMG20A High mobility group protein 20A yes no 2 5.6341E-05 109.48 3 2 0.90421 1.3739 18.736 3 Median 0.74842 1.0221 NaN 1 0 Median 0.93991 1.4096 3.6247 2 0 Median 44541000 21308000 23232000 12900000 4741900 8157700 31641000 16566000 15075000 6979 832 7134 25464;25465;25466;25467;25468 38490;38491;38492;38493;38494;38495 38492 6 LEVEANNAFDQYR PPLEDGAMPSARLRKLEVEANNAFDQYRDL RKLEVEANNAFDQYRDLYFEGGVSSVYLWD K L E Y R D 2 1 2 1 0 1 2 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 13 0 1567.7267 B1AK87;B2R7T8;B1AK88;B4DWA6;P47756;B1AK85 B1AK87 84 96 CAPZB F-actin-capping protein subunit beta yes no 2 1.385E-12 161.67 3 0.80273 1.1243 3.1739 3 Median 0.80273 1.1243 3.1739 3 0 Median NaN NaN NaN 0 0 Median 14531000 8004700 6526500 14531000 8004700 6526500 0 0 0 6980 672 7135 25469;25470;25471 38496;38497;38498;38499 38497 4 LEVEINK L E N K 0 0 1 0 0 0 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 7 0 843.47018 REV__C0JYZ2 yes no 2 0.01461 97.473 3 0.85187 1.0643 11.787 3 Plateau 0.85187 1.0643 11.787 3 0 Plateau NaN NaN NaN 0 0 Median 99866000 55849000 44017000 99866000 55849000 44017000 0 0 0 + 6981 1841 7136 25472;25473;25474 38500;38501;38502 38502 3 LEVELHIK L E I K 0 0 0 0 0 0 2 0 1 1 2 1 0 0 0 0 0 0 0 1 0 0 8 0 979.57023 REV__Q7Z745 yes no 2 0.026009 95.352 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 6982 1858 7137 25475 38503 38503 1 LEVFAR VKLNEIVGNEDTVSRLEVFAREGNVPNIII VGNEDTVSRLEVFAREGNVPNIIIAGPPGT R L E A R E 1 1 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 6 0 733.41227 Q75MT5;B5BUD2;P35250;H7C5Q7;F8WC37;H7C5A0;H7C5G4 Q75MT5 60 65 RFC2 Replication factor C subunit 2 yes no 2 0.026269 95.378 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5932900 5932900 0 5932900 5932900 0 0 0 0 6983 898 7138 25476 38504 38504 1 LEVKPHALELPDK HDSWRQKRDKVRLRRLEVKPHALELPDKHS RRLEVKPHALELPDKHSLAFVVRIERIDGV R L E D K H 1 0 0 1 0 0 2 0 1 0 3 2 0 0 2 0 0 0 0 1 0 0 13 1 1487.8348 A0A024RD36;Q6DKI1;R4GMU7;B7Z4G0 A0A024RD36 81 93 RPL7L1 60S ribosomal protein L7-like 1 yes no 3 1.2417E-12 154.23 3 1 0.73194 0.903 21.894 4 Median 0.82526 1.0122 16.405 3 0 Median 0.44302 0.6836 NaN 1 0 Median 63390000 33036000 30353000 56719000 28525000 28194000 6670800 4511100 2159700 6984 311 7139 25477;25478;25479;25480 38505;38506;38507;38508;38509;38510;38511 38505 7 LEVQATDREENK SKKKAVQRLEEQLMKLEVQATDREENKQIA LMKLEVQATDREENKQIALGTSKLNYLDPR K L E N K Q 1 1 1 1 0 1 3 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 12 1 1430.7001 P11387;B9EG90;Q9BVT2 P11387 701 712 TOP1 DNA topoisomerase 1 yes no 2;3 2.5672E-80 238.92 8 4 0.73941 0.97496 18.08 12 Median 0.72151 0.94972 5.1494 8 0 Median 0.77072 1.3832 4.7402 4 0 Median 2578500000 1491800000 1086700000 1735600000 1006500000 729100000 842820000 485240000 357580000 6985 1255 7140 25481;25482;25483;25484;25485;25486;25487;25488;25489;25490;25491;25492 38512;38513;38514;38515;38516;38517;38518;38519;38520;38521;38522;38523;38524;38525;38526;38527;38528;38529;38530;38531;38532;38533 38521 22 LEVSELATVK NEFEKWQEGLKDDEKLEVSELATVKRPQER KDDEKLEVSELATVKRPQERSYMLQRWQED K L E V K R 1 0 0 0 0 0 2 0 0 0 2 1 0 0 0 1 1 0 0 2 0 0 10 0 1087.6125 A4LAA3;P46100;B4DHH8 A4LAA3 1651 1660 ATRX Transcriptional regulator ATRX yes no 2 0.006167 91.265 3 1 0.49435 0.64348 42.989 4 Median 0.46792 0.61486 23.76 3 0 Median 0.83507 1.2114 NaN 1 0 Median 16632000 10183000 6449400 11381000 7431900 3948900 5251600 2751200 2500500 6986 556 7141 25493;25494;25495;25496 38534;38535;38536;38537 38534 4 LEVSMVK KRSSRANTVTPAVGRLEVSMVKPTPGLTPR TVTPAVGRLEVSMVKPTPGLTPRFDSRVFK R L E V K P 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 1 0 0 0 2 0 0 7 0 804.44153 A8K7A2;Q53HL2;B4DXT3 A8K7A2 177 183 CDCA8 Borealin yes no 2 0.021285 55.504 2 0.5432 0.76536 21.156 2 Median NaN NaN NaN 0 0 Median 0.5432 0.76536 21.156 2 0 Median 9070100 5566800 3503300 0 0 0 9070100 5566800 3503300 6987 632 7142 25497;25498 38538;38539 38539 211 2 LEVSMVKPTPGLTPR KRSSRANTVTPAVGRLEVSMVKPTPGLTPR LEVSMVKPTPGLTPRFDSRVFKTPGLRTPA R L E P R F 0 1 0 0 0 0 1 1 0 0 2 1 1 0 3 1 2 0 0 2 0 0 15 1 1623.9018 A8K7A2;Q53HL2;B4DXT3 A8K7A2 177 191 CDCA8 Borealin yes no 3 1.275E-07 88.385 4 4 0.6279 1.1226 12.993 7 Median 0.91872 1.2432 10.3 3 0 Median 0.61272 1.0595 6.8217 4 0 Median 287960000 175230000 112740000 28828000 12591000 16238000 259140000 162640000 96499000 6988 632 7143;7144 25499;25500;25501;25502;25503;25504;25505;25506 38540;38541;38542;38543;38544;38545;38546;38547;38548;38549;38550 38545 211 11 LEYFSCDHQELLQR IVGELKKENSDLSEKLEYFSCDHQELLQRV KLEYFSCDHQELLQRVETSEGLNSDLEMHA K L E Q R V 0 1 0 1 1 2 2 0 1 0 3 0 0 1 0 1 0 0 1 0 0 0 14 0 1836.8465 P49454 P49454 1942 1955 CENPF Centromere protein F yes yes 3 0.00034497 92.151 3 0.78414 1.0747 14.927 3 Median 0.78414 1.0747 14.927 3 0 Median NaN NaN NaN 0 0 Median 27484000 16048000 11436000 27484000 16048000 11436000 0 0 0 6989 1351 7145 25507;25508;25509 38551;38552;38553;38554;38555 38551 5 LFADAVQELLPQYK ELVDSICENARRYAKLFADAVQELLPQYKE KLFADAVQELLPQYKEREVVNKDVLDVYIE K L F Y K E 2 0 0 1 0 2 1 0 0 0 3 1 0 1 1 0 0 0 1 1 0 0 14 0 1633.8716 B2RBA6;A0A0S2Z4A5;P33993;A0A0S2Z441 B2RBA6 76 89 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 2 0.0037578 97.779 1 0.31957 0.40525 NaN 1 Median 0.31957 0.40525 NaN 1 0 Median NaN NaN NaN 0 0 Median 6095000 4637400 1457600 6095000 4637400 1457600 0 0 0 6990 464 7146 25510 38556 38556 1 LFALEFAR GQVCLITGAGSGLGRLFALEFARRRALLVL AGSGLGRLFALEFARRRALLVLWDINTQSN R L F A R R 2 1 0 0 0 0 1 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 8 0 965.53345 A0A024R7X6;Q8IZV5 A0A024R7X6 51 58 RDH10 Retinol dehydrogenase 10 yes no 2 0.025842 54.549 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4144300 4144300 0 4144300 4144300 0 0 0 0 6991 187 7147 25511 38557 38557 1 LFALVLTPTR FALPILNALLETPQRLFALVLTPTRELAFQ ETPQRLFALVLTPTRELAFQISEQFEALGS R L F T R E 1 1 0 0 0 0 0 0 0 0 3 0 0 1 1 0 2 0 0 1 0 0 10 0 1129.6859 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;A4UCU0;B4DYP6 Q53GJ1 86 95 hCG_27698;DDX47;E4-DBP Probable ATP-dependent RNA helicase DDX47 yes no 2 1.8392E-08 155.1 4 2 0.83844 1.1305 31.918 6 Median 0.89715 1.1928 6.8672 4 0 Median 0.42686 0.65146 4.0004 2 0 Median 132300000 75418000 56881000 93953000 48101000 45852000 38345000 27316000 11029000 6992 249 7148 25512;25513;25514;25515;25516;25517 38558;38559;38560;38561;38562;38563;38564;38565;38566;38567;38568;38569 38559 12 LFAPQQILQCSPAN CPVPGKPGEAVAARKLFAPQQILQCSPAN_ KLFAPQQILQCSPAN_______________ K L F A N - 2 0 1 0 1 3 0 0 0 1 2 0 0 1 2 1 0 0 0 0 0 0 14 0 1585.7923 B5BUF9;B5BU32;A0A024R8N6;P04183;K7ERV3 B5BUF9 221 234 TK1 Thymidine kinase;Thymidine kinase, cytosolic yes no 2 7.2382E-09 136.96 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4977400 0 0 4977400 0 0 0 0 0 6993 200 7149 25518;25519 38570;38571 38570 2 LFCLTLHR AGKDLPEGAVKGLCKLFCLTLHRYRDAASR AVKGLCKLFCLTLHRYRDAASRRALQAAIQ K L F H R Y 0 1 0 0 1 0 0 0 1 0 3 0 0 1 0 0 1 0 0 0 0 0 8 0 1058.5695 E1NZA1;Q92616;B4DM32 E1NZA1 53 60 PRIC295;GCN1L1 Translational activator GCN1 yes no 3 0.014021 57.047 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4135100 4135100 0 4135100 4135100 0 0 0 0 6994 1000 7150 25520;25521 38572;38573 38573 2 LFCVGFTK EAHVDVKTTDGYLLRLFCVGFTKKRNNQIR TDGYLLRLFCVGFTKKRNNQIRKTSYAQHQ R L F T K K 0 0 0 0 1 0 0 1 0 0 1 1 0 2 0 0 1 0 0 1 0 0 8 0 970.49462 Q6NXR8;P61247;A8K4W0;B7Z3M5;H0Y8L7;E9PFI5;D6RG13;D6RAT0;H0Y9Y4;D6RB09;D6RAS7;D6R9B6 Q6NXR8 137 144 RPS3A 40S ribosomal protein S3a yes no 2 0.0021028 147.69 4 2 0.76702 1.0019 28.776 6 Median 0.8159 1.0599 11.562 4 0 Median 0.4187 0.63526 1.728 2 0 Median 502160000 271080000 231070000 467100000 246950000 220150000 35057000 24135000 10922000 6995 1393 7151 25522;25523;25524;25525;25526;25527 38574;38575;38576;38577;38578;38579;38580;38581;38582;38583;38584 38576 11 LFDFVNAK TQYTFSSIEREEYGKLFDFVNAKKLNIKNR EREEYGKLFDFVNAKKLNIKNRGLKEGMNP K L F A K K 1 0 1 1 0 0 0 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 8 0 952.50182 A0A024R4Z6;Q08945;A0A0U1RRK2 A0A024R4Z6 414 421 SSRP1 FACT complex subunit SSRP1 yes no 2 0.003578 101.69 1 2 0.82047 1.0836 3.8524 3 Plateau 0.82047 1.0836 NaN 1 0 Median 0.70433 1.114 4.955 2 0 Median 405940000 226990000 178950000 170720000 93743000 76975000 235220000 133250000 101970000 6996 132 7152 25528;25529;25530 38585;38586;38587;38588 38586 4 LFDHPESPTPNPTEPLFLAQAEVYK VVSGKVYQWDDPDPRLFDHPESPTPNPTEP NPTEPLFLAQAEVYKELRLRGYDYGPHFQG R L F Y K E 2 0 1 1 0 1 3 0 1 0 3 1 0 2 5 1 2 0 1 1 0 0 25 0 2839.4069 A0A0U1RQF0;P49327 A0A0U1RQF0 968 992 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 0.0002615 32.04 1 1 0.80082 1.0197 NaN 1 Median 0.80082 1.0197 NaN 1 0 Median NaN NaN NaN 0 0 Median 20247000 8002500 12244000 15432000 8002500 7429400 4814600 0 4814600 6997 486 7153 25531;25532 38589;38590;38591 38590 3 LFDIFSQQVATVIQSR FAHREDGPGIPADIKLFDIFSQQVATVIQS FDIFSQQVATVIQSRQDMPSEDVVSLQVSL K L F S R Q 1 1 0 1 0 3 0 0 0 2 1 0 0 2 0 2 1 0 0 2 0 0 16 0 1850.989 Q53FR4;Q96QK1;Q5HYM2 Q53FR4 324 339 VPS35;DKFZp686O2462 Vacuolar protein sorting-associated protein 35 yes no 2 1.1581E-05 68.44 1 0.63726 0.8485 NaN 1 Median 0.63726 0.8485 NaN 1 0 Median NaN NaN NaN 0 0 Median 2837900 1730200 1107700 2837900 1730200 1107700 0 0 0 6998 1539 7154 25533 38592 38592 1 LFDLLNK GLEVYVTFFEIYNGKLFDLLNKKAKLRVLE FFEIYNGKLFDLLNKKAKLRVLEDGKQQVQ K L F N K K 0 0 1 1 0 0 0 0 0 0 3 1 0 1 0 0 0 0 0 0 0 0 7 0 861.496 A8K3S3;A0A140VKF1;Q99661;B7Z7M6;B7Z6Q6;Q8N5N1 A8K3S3 409 415 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 2 0.015689 101.21 6 0.76337 0.96736 1.8984 2 Median 0.76337 0.96736 1.8984 2 0 Median NaN NaN NaN 0 0 Median 32239000 21036000 11203000 32239000 21036000 11203000 0 0 0 6999 514 7155 25534;25535;25536;25537;25538;25539 38593;38594;38595;38596;38597;38598;38599;38600 38598 8 LFDLLNKK GLEVYVTFFEIYNGKLFDLLNKKAKLRVLE FEIYNGKLFDLLNKKAKLRVLEDGKQQVQV K L F K K A 0 0 1 1 0 0 0 0 0 0 3 2 0 1 0 0 0 0 0 0 0 0 8 1 989.59097 A8K3S3;A0A140VKF1;Q99661;B7Z7M6;B7Z6Q6;Q8N5N1 A8K3S3 409 416 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 2 0.043029 75.189 1 0.70102 0.87358 NaN 1 Median 0.70102 0.87358 NaN 1 0 Median NaN NaN NaN 0 0 Median 3732500 2381400 1351000 3732500 2381400 1351000 0 0 0 7000 514 7156 25540 38601 38601 1 LFDQAFGLPR GPSWDPFRDWYPHSRLFDQAFGLPRLPEEW YPHSRLFDQAFGLPRLPEEWSQWLGGSSWP R L F P R L 1 1 0 1 0 1 0 1 0 0 2 0 0 2 1 0 0 0 0 0 0 0 10 0 1162.6135 V9HW43;P04792;F8WE04 V9HW43 28 37 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 2 1.0502E-06 143.7 4 2 0.34547 0.47324 114.76 6 Median 0.34227 0.47231 5.5342 4 0 Median 2.6001 4.237 4.698 2 0 Median 543220000 317530000 225690000 370250000 275190000 95065000 172960000 42338000 130630000 7001 1232 7157 25541;25542;25543;25544;25545;25546 38602;38603;38604;38605;38606;38607;38608;38609;38610;38611;38612;38613 38603 12 LFEAEAQDLFR GSFWAQPLQNTDNRRLFEAEAQDLFRDIQS DNRRLFEAEAQDLFRDIQSLPQKAAVRKLN R L F F R D 2 1 0 1 0 1 2 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 11 0 1337.6616 A8K9B9;A0A024R9N6;Q9H223 A8K9B9 273 283 EHD4 EH domain-containing protein 4 yes no 2 0.020073 89.886 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7002 228 7158 25547 38614 38614 1 LFEFAGYDVLR VGHLRSTIIGESISRLFEFAGYDVLRLNHV SISRLFEFAGYDVLRLNHVGDWGTQFGMLI R L F L R L 1 1 0 1 0 0 1 1 0 0 2 0 0 2 0 0 0 0 1 1 0 0 11 0 1328.6765 P54136;B4DXW6 P54136 224 234 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 0.0015903 108.67 3 0.51606 0.70929 26.203 2 Median 0.51606 0.70929 26.203 2 0 Median NaN NaN NaN 0 0 Median 12455000 8349600 4105500 12455000 8349600 4105500 0 0 0 7003 1373 7159 25548;25549;25550 38615;38616;38617;38618 38618 4 LFEGNALLR AARELLTLDEKDPRRLFEGNALLRRLVRIG EKDPRRLFEGNALLRRLVRIGVLDEGKMKL R L F L R R 1 1 1 0 0 0 1 1 0 0 3 0 0 1 0 0 0 0 0 0 0 0 9 0 1031.5764 A0A024R4M0;P46781;B5MCT8;C9JM19;B7Z732;A5D904 A0A024R4M0 71 79 RPS9 40S ribosomal protein S9 yes no 2 0.00097596 120.62 5 2 0.77048 1.0616 10.158 6 Median 0.78694 1.0854 2.4385 4 0 Median 0.54347 0.89437 2.0861 2 0 Median 935880000 554690000 381200000 608970000 346200000 262770000 326910000 208490000 118430000 7004 124 7160 25551;25552;25553;25554;25555;25556;25557 38619;38620;38621;38622;38623;38624;38625;38626;38627;38628;38629;38630;38631;38632;38633;38634;38635;38636;38637;38638 38620 20 LFEGNALLRR AARELLTLDEKDPRRLFEGNALLRRLVRIG KDPRRLFEGNALLRRLVRIGVLDEGKMKLD R L F R R L 1 2 1 0 0 0 1 1 0 0 3 0 0 1 0 0 0 0 0 0 0 0 10 1 1187.6775 A0A024R4M0;P46781;B5MCT8;C9JM19;B7Z732;A5D904 A0A024R4M0 71 80 RPS9 40S ribosomal protein S9 yes no 3 0.0075007 33.961 1 2 0.61591 0.81008 21.066 2 Median 0.71149 0.9402 NaN 1 0 Median 0.53316 0.69797 NaN 1 0 Median 11428000 7141000 4286600 5727200 2992200 2735000 5700300 4148700 1551600 7005 124 7161 25558;25559;25560 38639;38640;38641 38639 3 LFEISDIVIK LKTIAANRKMPLPLKLFEISDIVIKDSNTD PLPLKLFEISDIVIKDSNTDVGAKNYRHLC K L F I K D 0 0 0 1 0 0 1 0 0 3 1 1 0 1 0 1 0 0 0 1 0 0 10 0 1175.6802 B7ZB32;Q9BR63;A8K666;Q9NSD9 B7ZB32 375 384 FARSB Phenylalanine--tRNA ligase beta subunit yes no 2 0.0012247 88.948 2 0.52744 0.66682 19.968 2 Median 0.52744 0.66682 19.968 2 0 Median NaN NaN NaN 0 0 Median 4457300 2845900 1611400 4457300 2845900 1611400 0 0 0 7006 621 7162 25561;25562 38642;38643 38643 2 LFELLEK PKQPNVQDFQFFPPRLFELLEKEILFYRKT DFQFFPPRLFELLEKEILFYRKTIGYKVPR R L F E K E 0 0 0 0 0 0 2 0 0 0 3 1 0 1 0 0 0 0 0 0 0 0 7 0 890.51132 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370 O60264 781 787 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 2 0.0078973 149.4 7 2.2412 2.7053 12.593 5 Median 2.2412 2.7053 12.593 5 0 Median NaN NaN NaN 0 0 Median 115470000 41343000 74129000 115470000 41343000 74129000 0 0 0 7007 1189 7163 25563;25564;25565;25566;25567;25568;25569 38644;38645;38646;38647;38648;38649;38650;38651;38652;38653;38654;38655 38647 12 LFENLR TNQNTPEYMEKIKQRLFENLRMLPHAPGVQ EYMEKIKQRLFENLRMLPHAPGVQMQAIPE R L F L R M 0 1 1 0 0 0 1 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 6 0 790.43374 Q92769;B3KUJ5;Q59GB9;B4DN40;Q96G03;Q6IT96;B5BU61;Q13547;B4DRG0 Q92769 367 372 HDAC2;PGM2;HDAC1 Histone deacetylase 2;Histone deacetylase;Phosphoglucomutase-2;Histone deacetylase 1 no no 2 0.028554 119.23 3 0.72402 0.98326 4.897 3 Plateau 0.72402 0.98326 4.897 3 0 Plateau NaN NaN NaN 0 0 Median 105490000 62194000 43292000 105490000 62194000 43292000 0 0 0 7008 1675;894 7164 25570;25571;25572 38656;38657;38658;38659 38656 4 LFFAGEHTIR TPGPSIPGAPQPIPRLFFAGEHTIRNYPAT QPIPRLFFAGEHTIRNYPATVHGALLSGLR R L F I R N 1 1 0 0 0 0 1 1 1 1 1 0 0 2 0 0 1 0 0 0 0 0 10 0 1189.6244 A8K2R3;O60341;R4GMP9 A8K2R3 674 683 KDM1A Lysine-specific histone demethylase 1A yes no 3 0.0070149 42.336 1 0.73711 0.96428 NaN 1 Median 0.73711 0.96428 NaN 1 0 Median NaN NaN NaN 0 0 Median 7376600 4206500 3170100 7376600 4206500 3170100 0 0 0 7009 583 7165 25573 38660;38661 38661 2 LFFVDTGSK ERTSGGLLSEAPNEKLFFVDTGSKEKGLTK EAPNEKLFFVDTGSKEKGLTKKRTKVQKKS K L F S K E 0 0 0 1 0 0 0 1 0 0 1 1 0 2 0 1 1 0 0 1 0 0 9 0 1012.5229 Q7L4X7;Q96CS0;Q53YP0;B4E1N4;Q9NZM5;B4DVK1;B4DND9;B4E013 Q7L4X7 82 90 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes no 2 0.013614 57.96 2 0.56526 0.79053 9.5654 2 Median NaN NaN NaN 0 0 Median 0.56526 0.79053 9.5654 2 0 Median 9637400 6189500 3448000 0 0 0 9637400 6189500 3448000 7010 887 7166 25574;25575 38662;38663 38663 2 LFGAAEVQR AWQRLKGLALQRQGKLFGAAEVQRFNRDVD LQRQGKLFGAAEVQRFNRDVDETISWIKEK K L F Q R F 2 1 0 0 0 1 1 1 0 0 1 0 0 1 0 0 0 0 0 1 0 0 9 0 989.52943 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 251 259 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.0014916 95.741 2 0.82691 1.1358 NaN 1 Median 0.82691 1.1358 NaN 1 0 Median NaN NaN NaN 0 0 Median 17964000 14501000 3463000 17964000 14501000 3463000 0 0 0 7011 1476 7167 25576;25577 38664;38665 38665 2 LFGETILGLTQGSVSDLLARPK KRVKEVLTDNNLGQRLFGETILGLTQGSVS GLTQGSVSDLLARPKPWHKLSLKGREPFVR R L F P K P 1 1 0 1 0 1 1 3 0 1 5 1 0 1 1 2 2 0 0 1 0 0 22 1 2314.2896 P39880 P39880 1148 1169 CUX1 Homeobox protein cut-like 1 yes yes 3 0.01034 47.752 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7012 1331 7168 25578 38666 38666 1 LFGNILDK VRECARSQGFPDTYRLFGNILDKHRQVGNA GFPDTYRLFGNILDKHRQVGNAVPPPLAKA R L F D K H 0 0 1 1 0 0 0 1 0 1 2 1 0 1 0 0 0 0 0 0 0 0 8 0 918.51747 A0A024R7E3;P26358;Q59FP7;B3KVA0;K7ENW7;I6L9H2 A0A024R7E3 1627 1634 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 no no 2 0.0071408 84.498 3 0.42165 0.51655 6.7901 3 Plateau 0.42165 0.51655 6.7901 3 0 Plateau NaN NaN NaN 0 0 Median 43048000 30524000 12524000 43048000 30524000 12524000 0 0 0 7013 176;1129 7169 25579;25580;25581 38667;38668;38669;38670 38669 4 LFGSAANVVSAK QKYWCVTATRVAPERLFGSAANVVSAKRNR PERLFGSAANVVSAKRNRLAPAHVDEQVFL R L F A K R 3 0 1 0 0 0 0 1 0 0 1 1 0 1 0 2 0 0 0 2 0 0 12 0 1162.6346 A0A024RBU4;O96006 A0A024RBU4 621 632 hCG_1981838;ZBED1 Zinc finger BED domain-containing protein 1 yes no 2 0.0050649 86.189 2 0.43154 0.55322 191.51 2 Median 0.43154 0.55322 191.51 2 0 Median NaN NaN NaN 0 0 Median 13052000 9511600 3540600 13052000 9511600 3540600 0 0 0 7014 282 7170 25582;25583 38671;38672 38672 2 LFHEVVQAFR VERWKQAAKQRLTPKLFHEVVQAFRAAVAT RLTPKLFHEVVQAFRAAVATTRGDQESAEA K L F F R A 1 1 0 0 0 1 1 0 1 0 1 0 0 2 0 0 0 0 0 2 0 0 10 0 1244.6666 Q9Y3T9;B3KNC3;B4DM71 Q9Y3T9 169 178 NOC2L Nucleolar complex protein 2 homolog yes no 3 0.0011947 90.15 4 2 0.68147 0.92792 5.5552 5 Median 0.68841 1.0007 4.7057 3 0 Plateau 0.64822 0.93516 8.6962 2 0 Median 51368000 31187000 20181000 35336000 21482000 13854000 16033000 9705100 6327400 7015 1820 7171 25584;25585;25586;25587;25588;25589 38673;38674;38675;38676;38677;38678;38679;38680;38681 38678 9 LFHNTPGHR ITGRFLASCGDRAVRLFHNTPGHRAMVEEM GDRAVRLFHNTPGHRAMVEEMQGHLKRASN R L F H R A 0 1 1 0 0 0 0 1 2 0 1 0 0 1 1 0 1 0 0 0 0 0 9 0 1077.5468 B4DY59;E9PF19;A0A0S2Z5F3;Q8N2L6;B2RB52;Q9Y4P3;B4DY50;Q96E41 B4DY59 269 277 TBL2 Transducin beta-like protein 2 yes no 2 0.025125 76.478 1 1.2407 1.7307 NaN 1 Median 1.2407 1.7307 NaN 1 0 Median NaN NaN NaN 0 0 Median 2036200 1088300 947820 2036200 1088300 947820 0 0 0 7016 480 7172 25590 38682 38682 1 LFIFETFCR FFLVACLEDFIENARLFIFETFCRIHQCIS FIENARLFIFETFCRIHQCISI________ R L F C R I 0 1 0 0 1 0 1 0 0 1 1 0 0 3 0 0 1 0 0 0 0 0 9 0 1231.606 E5RHS5;E5RGA2;B3KW56;Q6IAX5;B2R806;P60228 E5RHS5 211 219 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 2 0.0051454 87.616 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2204000 2204000 0 2204000 2204000 0 0 0 0 7017 712 7173 25591;25592 38683;38684 38684 2 LFIGGLNTETNEK ______________________________ GKLFIGGLNTETNEKALEAVFGKYGRIVEV K L F E K A 0 0 2 0 0 0 2 2 0 1 2 1 0 1 0 0 2 0 0 0 0 0 13 0 1434.7355 H0Y6E7;H3BT71;P38159;H3BR27;H3BNC1;Q2VIN3;Q96E39;A0A1B0GUK8 H0Y6E7 12 24 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 2 2.5914E-10 144.55 4 2 0.87515 1.1058 6.4538 4 Median 0.87515 1.1058 6.4538 4 0 Median NaN NaN NaN 0 0 Median 240790000 124780000 116010000 228500000 124780000 103720000 12298000 0 12298000 7018 1091;1531 7174 25593;25594;25595;25596;25597;25598 38685;38686;38687;38688;38689;38690;38691;38692;38693 38690 9 LFIGGLNVQTSESGLR ______________________________ FIGGLNVQTSESGLRGHFEAFGTLTDCVVV K L F L R G 0 1 1 0 0 1 1 3 0 1 3 0 0 1 0 2 1 0 0 1 0 0 16 0 1689.905 Q13151 Q13151 9 24 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 2 9.2725E-66 196.24 5 2 0.3387 0.46895 125.02 5 Median 0.30492 0.4185 8.0071 3 0 Median 2.6358 4.179 13.7 2 0 Median 244390000 152870000 91518000 173480000 132640000 40845000 70908000 20234000 50673000 7019 1464 7175 25599;25600;25601;25602;25603;25604;25605 38694;38695;38696;38697;38698;38699;38700;38701;38702;38703;38704;38705;38706 38699 13 LFIGGLPNYLNDDQVK VPGVVSTVVPDSAHKLFIGGLPNYLNDDQV FIGGLPNYLNDDQVKELLTSFGPLKAFNLV K L F V K E 0 0 2 2 0 1 0 2 0 1 3 1 0 1 1 0 0 0 1 1 0 0 16 0 1804.9359 K7ENG2;B5BU25;P26368 K7ENG2 97 112 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 2 0.0047763 73.36 2 0.50785 0.64393 8.2375 2 Median 0.50785 0.64393 8.2375 2 0 Median NaN NaN NaN 0 0 Median 6425200 4018500 2406700 6425200 4018500 2406700 0 0 0 7020 893 7176 25606;25607 38707;38708 38707 2 LFIGGLSFETTDDSLREHFEK ______________________________ SFETTDDSLREHFEKWGTLTDCVVMRDPQT K L F E K W 0 1 0 2 0 0 3 2 1 1 3 1 0 3 0 2 2 0 0 0 0 0 21 1 2440.1911 B4E3E6;B4DDB6;P51991;Q65ZQ3 B4E3E6 15 35 HNRPA3;HNRNPA3;D10S102 Heterogeneous nuclear ribonucleoprotein A3 yes no 3 0.017985 58.073 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2066400 2066400 0 2066400 2066400 0 0 0 0 7021 793 7177 25608 38709 38709 1 LFIGGLSFETTDESLR MSKSESPKEPEQLRKLFIGGLSFETTDESL FIGGLSFETTDESLRSHFEQWGTLTDCVVM K L F L R S 0 1 0 1 0 0 2 2 0 1 3 0 0 2 0 2 2 0 0 0 0 0 16 0 1783.8992 F8W6I7;A0A024RB53;A0A024RAZ7;P09651;Q0VAC0;Q6IPF2;A0A024RC46;F8VTQ5;F8VZ49;A0A024QZ98;Q32P51;B4DP35;F8W646;B4E0B5 F8W6I7 16 31 HNRNPA1;HNRPA1;hCG_2020860;RP11-78J21.1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2 2.4471E-44 171.05 5 2 0.81971 1.1756 104.93 4 Median 0.35107 0.47682 11.816 2 0 Median 1.8772 2.9118 12.474 2 0 Median 147220000 92566000 54657000 100630000 77520000 23112000 46591000 15046000 31545000 7022 253 7178 25609;25610;25611;25612;25613;25614;25615 38710;38711;38712;38713;38714;38715;38716;38717;38718;38719;38720;38721;38722 38715 13 LFIGGLSFETTEESLR VPLERKKREKEQFRKLFIGGLSFETTEESL FIGGLSFETTEESLRNYYEQWGKLTDCVVM K L F L R N 0 1 0 0 0 0 3 2 0 1 3 0 0 2 0 2 2 0 0 0 0 0 16 0 1797.9149 P22626;A0A087WUI2;I6L957 P22626 23 38 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2 8.705E-05 85.845 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68703000 68703000 0 68703000 68703000 0 0 0 0 7023 1290 7179 25616;25617 38723;38724 38724 2 LFIGNLPR ______________________________ ______________________________ K L F P R E 0 1 1 0 0 0 0 1 0 1 2 0 0 1 1 0 0 0 0 0 0 0 8 0 928.54944 A8K9U0;Q9BWF3;E9PB51;Q9BQ04;E9PLB0;E9PM61;D6R9K7;U3KQD5;J3QRR5 A8K9U0 4 11 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 2 0.0098822 92.191 2 0.37385 0.5114 15.019 2 Median 0.37385 0.5114 15.019 2 0 Median NaN NaN NaN 0 0 Median 12193000 8860400 3332300 12193000 8860400 3332300 0 0 0 7024 650 7180 25618;25619 38725;38726;38727 38726 3 LFILLDTGTTPVTR ______________________________ RLFILLDTGTTPVTRKAAAQQLGEVVKLHP R L F T R K 0 1 0 1 0 0 0 1 0 1 3 0 0 1 1 0 4 0 0 1 0 0 14 0 1545.8766 Q2M1V9;A0A0A0MTH9;O14981 Q2M1V9 9 22 BTAF1 TATA-binding protein-associated factor 172 yes no 2 0.00031103 98.898 1 0.38774 0.48715 NaN 1 Median 0.38774 0.48715 NaN 1 0 Median NaN NaN NaN 0 0 Median 562070 331910 230150 562070 331910 230150 0 0 0 7025 405 7181 25620 38728;38729 38729 2 LFLIDFGLAK KPDNFLMGIGRHCNKLFLIDFGLAKKYRDN RHCNKLFLIDFGLAKKYRDNRTRQHIPYRE K L F A K K 1 0 0 1 0 0 0 1 0 1 3 1 0 2 0 0 0 0 0 0 0 0 10 0 1135.6641 Q05DL3;V9HW00;P48729;Q8N752;B4E1D9;D6REM4 Q05DL3 153 162 CSNK1A1;HEL-S-77p;CSNK1A1L Casein kinase I isoform alpha;Casein kinase I isoform alpha-like yes no 2 0.0041909 100.02 4 0.5907 0.74486 8.0272 3 Median 0.5907 0.74486 8.0272 3 0 Median NaN NaN NaN 0 0 Median 15832000 10287000 5544400 15832000 10287000 5544400 0 0 0 7026 1349 7182 25621;25622;25623;25624 38730;38731;38732;38733;38734;38735;38736 38731 7 LFLLPHK GKTFDYKIPYTTVLRLFLLPHKDQRQMFFV IPYTTVLRLFLLPHKDQRQMFFVISLDPPI R L F H K D 0 0 0 0 0 0 0 0 1 0 3 1 0 1 1 0 0 0 0 0 0 0 7 0 866.53781 A0A024R4Z6;Q08945;E9PMD4 A0A024R4Z6 242 248 SSRP1 FACT complex subunit SSRP1 yes no 2 0.027093 66.994 2 1 0.81135 1.0622 6.5235 3 Median 0.81207 1.0593 0.38254 2 0 Median 0.73479 1.1859 NaN 1 0 Median 328320000 179830000 148490000 252680000 137440000 115240000 75643000 42387000 33256000 7027 132 7183 25625;25626;25627 38737;38738;38739;38740;38741;38742;38743 38738 7 LFLLQQPLAPSGLTLK TFFTALLSLLVSGPRLFLLQQPLAPSGLTL FLLQQPLAPSGLTLKSEALRNWQATMEGGV R L F L K S 1 0 0 0 0 2 0 1 0 0 6 1 0 1 2 1 1 0 0 0 0 0 16 0 1738.0393 Q9UDT1;Q6NTF9 Q9UDT1 36 51 WUGSC:H_RG122E10.2a;RHBDD2 Rhomboid domain-containing protein 2 yes no 2 9.4083E-13 100.55 4 0.42732 0.53513 1.1625 2 Median 0.42732 0.53513 1.1625 2 0 Median NaN NaN NaN 0 0 Median 7120700 5578600 1542100 7120700 5578600 1542100 0 0 0 7028 1587 7184 25628;25629;25630;25631 38744;38745;38746;38747 38746 4 LFLNETQTQEITEDIPVK YEAAKVFGLRSRKLKLFLNETQTQEITEDI NETQTQEITEDIPVKTLNMKTVYVSVLPTT K L F V K T 0 0 1 1 0 2 3 0 0 2 2 1 0 1 1 0 3 0 0 1 0 0 18 0 2117.0892 Q59G75;P41252;J3KR24;Q7Z355;B4DVX2;Q6P0M4;Q7L4K8;Q9P1N9 Q59G75 1244 1261 IARS;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 2 3.8785E-51 203.85 4 0.5355 0.67492 8.284 4 Median 0.5355 0.67492 8.284 4 0 Median NaN NaN NaN 0 0 Median 50617000 32274000 18342000 50617000 32274000 18342000 0 0 0 7029 1334 7185 25632;25633;25634;25635 38748;38749;38750;38751;38752;38753;38754;38755;38756 38752 9 LFMLLLEK DPNGSRYLLGDMEGRLFMLLLEKEEQMDGT LGDMEGRLFMLLLEKEEQMDGTVTLKDLRV R L F E K E 0 0 0 0 0 0 1 0 0 0 4 1 1 1 0 0 0 0 0 0 0 0 8 0 1005.5933 Q16531;B4DSA8;F5GY55;B7Z2A1;B7Z859 Q16531 280 287 DDB1 DNA damage-binding protein 1 yes no 2 0.0070122 71.877 4 2 0.63842 0.99141 8.2809 3 Median 0.84923 1.0969 NaN 1 0 Median 0.61914 0.96062 4.4609 2 0 Median 60740000 36716000 24024000 4589300 3269400 1319900 56151000 33447000 22705000 7030 1520 7186;7187 25636;25637;25638;25639;25640;25641 38757;38758;38759;38760;38761;38762;38763 38762 698 7 LFNAIIHR GLRCDNFTSSWRDGRLFNAIIHRHKPLLID SSWRDGRLFNAIIHRHKPLLIDMNKVYRQT R L F H R H 1 1 1 0 0 0 0 0 1 2 1 0 0 1 0 0 0 0 0 0 0 0 8 0 982.57123 Q15149;E9PMV1;E9PKG0 Q15149 329 336 PLEC Plectin yes no 3 0.013299 42.109 2 1.1431 1.5233 NaN 1 Median 1.1431 1.5233 NaN 1 0 Median NaN NaN NaN 0 0 Median 21504000 2770300 18733000 21504000 2770300 18733000 0 0 0 7031 1507 7188 25642;25643 38764;38765;38766 38765 3 LFNDDNTIPFIIR ERTNIEPWVCANIIRLFNDDNTIPFIIRYR IRLFNDDNTIPFIIRYRKELINNLDADSLR R L F I R Y 0 1 2 2 0 0 0 0 0 3 1 0 0 2 1 0 1 0 0 0 0 0 13 0 1576.8249 B3KPM8;Q8N5C6 B3KPM8 235 247 SRBD1 S1 RNA-binding domain-containing protein 1 yes no 2 0.00017236 112.83 3 2 0.6711 0.93498 31.869 3 Median 0.80242 1.1247 26.125 2 0 Median 0.56439 0.71728 NaN 1 0 Median 13176000 9410500 3765600 5781800 3980700 1801000 7394300 5429700 1964500 7032 765 7189 25644;25645;25646;25647;25648 38767;38768;38769;38770;38771;38772 38769 6 LFNDIHK YNCPHANEAAFPFYRLFNDIHKFRD_____ EAAFPFYRLFNDIHKFRD____________ R L F H K F 0 0 1 1 0 0 0 0 1 1 1 1 0 1 0 0 0 0 0 0 0 0 7 0 885.47085 Q6FI18;O00622;B4DI61;Q53FA4;Q9UID7 Q6FI18 372 378 CYR61 Protein CYR61 yes no 2 0.020612 76.035 1 1.7452 2.6267 NaN 1 Median NaN NaN NaN 0 0 Median 1.7452 2.6267 NaN 1 0 Median 17576000 6521500 11054000 0 0 0 17576000 6521500 11054000 7033 1168 7190 25649 38773 38773 1 LFNEFIQLGSDVELICR SLLVLPFSYVPDILKLFNEFIQLGSDVELI NEFIQLGSDVELICRCLFFLLRIHFGQITS K L F C R C 0 1 1 1 1 1 2 1 0 2 3 0 0 2 0 1 0 0 0 1 0 0 17 0 2052.035 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 838 854 WDR3 WD repeat-containing protein 3 yes no 2 8.9261E-43 206.18 2 0.79305 1.1034 19.278 2 Median 0.79305 1.1034 19.278 2 0 Median NaN NaN NaN 0 0 Median 12020000 6245700 5774300 12020000 6245700 5774300 0 0 0 7034 1576 7191 25650;25651 38774;38775;38776;38777 38775 4 LFNEVQEK QLMGLFNRIIRKVVKLFNEVQEKAIEEQMV IIRKVVKLFNEVQEKAIEEQMVAAKDVVME K L F E K A 0 0 1 0 0 1 2 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 8 0 1005.5131 Q9H0A0;A0A087WV29 Q9H0A0 905 912 NAT10 N-acetyltransferase 10 yes no 2 8.4024E-06 109.01 4 2 0.64213 1.0313 11.999 5 Median 0.79957 1.0315 16.35 3 0 Median 0.63776 1.0108 2.8456 2 0 Median 390470000 225500000 164970000 213720000 121160000 92565000 176750000 104340000 72409000 7035 1730 7192 25652;25653;25654;25655;25656;25657 38778;38779;38780;38781;38782;38783;38784 38780 7 LFNIHED IKDGEQHEDLNEVAKLFNIHED________ EDLNEVAKLFNIHED_______________ K L F E D - 0 0 1 1 0 0 1 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 7 0 886.41848 O95831;A0A140VK04;E9PMA0 O95831 607 613 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 2 0.025224 63.563 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22584000 0 0 22584000 0 0 0 0 0 7036 1224 7193 25658 38785 38785 1 LFNLSK VPRRLGPKRASRIRKLFNLSKEDDVRQYVV PKRASRIRKLFNLSKEDDVRQYVVRKPLNK K L F S K E 0 0 1 0 0 0 0 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 6 0 720.41703 Q96DV6;A2A3R6;P62753;A2A3R5;D3DRJ5 Q96DV6 144 149 RPS6 40S ribosomal protein S6 yes no 2 0.0017984 140.01 8 2 0.93044 1.1336 21.43 9 Median 0.93327 1.1672 15.539 7 0 Median 0.5202 0.81624 1.0879 2 0 Median 12989000000 6500600000 6488800000 11215000000 5383800000 5830800000 1774700000 1116800000 657930000 7037 535 7194 25659;25660;25661;25662;25663;25664;25665;25666;25667;25668 38786;38787;38788;38789;38790;38791;38792;38793;38794;38795;38796;38797;38798;38799;38800;38801;38802;38803;38804;38805;38806;38807;38808;38809;38810 38789 25 LFNLSKEDDVR VPRRLGPKRASRIRKLFNLSKEDDVRQYVV RIRKLFNLSKEDDVRQYVVRKPLNKEGKKP K L F V R Q 0 1 1 2 0 0 1 0 0 0 2 1 0 1 0 1 0 0 0 1 0 0 11 1 1334.683 Q96DV6;A2A3R6;P62753;A2A3R5 Q96DV6 144 154 RPS6 40S ribosomal protein S6 yes no 2;3 0.0036083 126.03 3 1.0252 1.3428 NaN 1 Median 1.0252 1.3428 NaN 1 0 Median NaN NaN NaN 0 0 Median 183860000 88134000 95726000 183860000 88134000 95726000 0 0 0 7038 535 7195 25669;25670;25671 38811;38812;38813;38814 38812 4 LFPELFTAENLR QSLSVGNFAARLLVRLFPELFTAENLRLQY LVRLFPELFTAENLRLQYNHSGACNKKQLD R L F L R L 1 1 1 0 0 0 2 0 0 0 3 0 0 2 1 0 1 0 0 0 0 0 12 0 1448.7664 Q5T5X7 Q5T5X7 747 758 BEND3 BEN domain-containing protein 3 yes yes 2 0.045525 73.887 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1080500 1080500 0 1080500 1080500 0 0 0 0 7039 1569 7196 25672 38815 38815 1 LFPGLAIK ______________________________ DSSLQARLFPGLAIKIQRSNGLIHSANVRT R L F I K I 1 0 0 0 0 0 0 1 0 1 2 1 0 1 1 0 0 0 0 0 0 0 8 0 857.53747 A8K3S3;A0A140VKF1;Q99661;B7Z6Q6;Q5JR91 A8K3S3 11 18 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 2 0.033769 83.287 2 0.75467 0.93318 NaN 1 Median 0.75467 0.93318 NaN 1 0 Median NaN NaN NaN 0 0 Median 35779000 23380000 12399000 35779000 23380000 12399000 0 0 0 7040 514 7197 25673;25674 38816;38817 38817 2 LFQCLLHR DLFPTTKIPNPRFQRLFQCLLHRALHPREP PNPRFQRLFQCLLHRALHPREPLPPIQQHI R L F H R A 0 1 0 0 1 1 0 0 1 0 3 0 0 1 0 0 0 0 0 0 0 0 8 0 1085.5804 P13010;Q53T09 P13010 490 497 XRCC5 X-ray repair cross-complementing protein 5 yes no 3 0.0028118 77.674 5 2 0.52421 0.70851 26.95 6 Median 0.55065 0.74374 12.886 5 0 Median 0.26344 0.39478 NaN 1 0 Median 156280000 100400000 55887000 138360000 87555000 50805000 17923000 12840000 5082300 7041 1262 7198 25675;25676;25677;25678;25679;25680;25681 38818;38819;38820;38821;38822;38823;38824;38825;38826;38827;38828;38829 38822 12 LFQECCPHSTDR AKIKELRENTQTTIKLFQECCPHSTDRVVL TIKLFQECCPHSTDRVVLIGGKPDRVVECI K L F D R V 0 1 0 1 2 1 1 0 1 0 1 0 0 1 1 1 1 0 0 0 0 0 12 0 1548.6449 A0A024R228;P61978;B4DUQ1;Q5EC54;Q5T6W2;B4DFF1 A0A024R228 180 191 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 2;3 1.2796E-15 149.49 8 2 0.3531 0.47006 77.436 10 Median 0.3464 0.46404 8.4542 8 0 Median 2.2731 2.9202 0.7299 2 0 Median 154620000 111770000 42846000 147240000 109160000 38081000 7375200 2610700 4764600 7042 77 7199 25682;25683;25684;25685;25686;25687;25688;25689;25690;25691 38830;38831;38832;38833;38834;38835;38836;38837;38838;38839;38840;38841;38842;38843;38844 38831 15 LFQEDDEIPLYLK ASRRHFKNKVPEKQKLFQEDDEIPLYLKGG QKLFQEDDEIPLYLKGGVADALLYRATMIL K L F L K G 0 0 0 2 0 1 2 0 0 1 3 1 0 1 1 0 0 0 1 0 0 0 13 0 1621.8239 Q496I0;D6RIE3;D6RGV5;H0UI06;P14406 Q496I0 34 46 COX7A2 Cytochrome c oxidase subunit 7A2, mitochondrial yes no 2 3.9951E-12 153.34 4 2 0.72416 0.90332 16.78 5 Median 0.72416 0.90332 4.9225 3 0 Plateau 0.76867 1.1696 1.6242 2 0 Median 112930000 62102000 50831000 67531000 35610000 31921000 45402000 26493000 18910000 7043 995 7200 25692;25693;25694;25695;25696;25697 38845;38846;38847;38848;38849;38850;38851;38852 38845 8 LFQEDPEAFLLYHR LNEQLYSGPSSAAQRLFQEDPEAFLLYHRG RLFQEDPEAFLLYHRGFQSQVKKWPLQPVD R L F H R G 1 1 0 1 0 1 2 0 1 0 3 0 0 2 1 0 0 0 1 0 0 0 14 0 1776.8835 O43159;E9PPY3 O43159 269 282 RRP8 Ribosomal RNA-processing protein 8 yes no 3 2.5292E-05 103.83 3 2 0.67003 0.95619 13.292 5 Median 0.73699 0.98644 16.819 3 0 Median 0.65086 0.91795 5.7725 2 0 Median 51675000 30717000 20958000 33308000 19135000 14174000 18367000 11582000 6784500 7044 1181 7201 25698;25699;25700;25701;25702 38853;38854;38855;38856;38857;38858;38859;38860 38854 8 LFQITPDK SGSQLLVGCEDGSVKLFQITPDKIQFERNF CEDGSVKLFQITPDKIQFERNFDRQKSRIL K L F D K I 0 0 0 1 0 1 0 0 0 1 1 1 0 1 1 0 1 0 0 0 0 0 8 0 960.52803 Q969X6;H3BSH7;H3BPD7;I3L4T9;J3KSI1;J3KSE6;J3KTR0 Q969X6 127 134 CIRH1A Cirhin yes no 2 0.0001667 124.08 3 1 0.94114 1.1585 11.036 4 Median 0.94727 1.1644 5.82 3 0 Median 0.64624 0.98153 NaN 1 0 Median 85959000 43309000 42651000 73140000 35096000 38044000 12819000 8212300 4606900 7045 1680 7202 25703;25704;25705;25706 38861;38862;38863;38864;38865;38866;38867;38868 38865 8 LFQSNDPTLR LGTTEATEAFFAMTKLFQSNDPTLRRMCYL FAMTKLFQSNDPTLRRMCYLTIKEMSCIAE K L F L R R 0 1 1 1 0 1 0 0 0 0 2 0 0 1 1 1 1 0 0 0 0 0 10 0 1189.6091 Q9Y678 Q9Y678 76 85 COPG1 Coatomer subunit gamma-1 yes yes 2 0.00073559 69.825 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2005300 2005300 0 2005300 2005300 0 0 0 0 7046 1832 7203 25707;25708 38869;38870 38869 2 LFQVEYAIEAIK SEYDRGVNTFSPEGRLFQVEYAIEAIKLAS EGRLFQVEYAIEAIKLASTAIGIQTSEGVC R L F I K L 2 0 0 0 0 1 2 0 0 2 1 1 0 1 0 0 0 0 1 1 0 0 12 0 1422.7759 Q5U0A0;A0A109NGN6;P28066 Q5U0A0 21 32 PSMA5 Proteasome subunit alpha type;Proteasome subunit alpha type-5 yes no 2 1.8932E-06 140.78 3 1 0.27159 0.33863 4.7802 2 Median 0.27159 0.33863 4.7802 2 0 Median NaN NaN NaN 0 0 Median 47729000 35675000 12054000 43394000 35675000 7718400 4335600 0 4335600 7047 491 7204 25709;25710;25711;25712 38871;38872;38873;38874;38875 38873 5 LFSLELVDESGEIR KSQIRTWSNSRGEGKLFSLELVDESGEIRA KLFSLELVDESGEIRATAFNEQVDKFFPLI K L F I R A 0 1 0 1 0 0 3 1 0 1 3 0 0 1 0 2 0 0 0 1 0 0 14 0 1605.825 P27694 P27694 221 234 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 2 4.8416E-13 170.52 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3140900 3140900 0 3140900 3140900 0 0 0 0 7048 1302 7205 25713;25714 38876;38877 38876 2 LFSSVTFETVEESK FVTYRPEFLPQVLSKLFSSVTFETVEESKA KLFSSVTFETVEESKAPRTRAVRNVRRHAC K L F S K A 0 0 0 0 0 0 3 0 0 0 1 1 0 2 0 3 2 0 0 2 0 0 14 0 1601.7825 B3KPQ5;A8K5Y7;Q9HAV4;Q9H8N6;B3KNC6 B3KPQ5 205 218 XPO5 Exportin-5 yes no 2 6.9841E-05 83.137 2 0.55125 0.70052 NaN 1 Median 0.55125 0.70052 NaN 1 0 Median NaN NaN NaN 0 0 Median 8738100 6923100 1815000 8738100 6923100 1815000 0 0 0 7049 619 7206 25715;25716 38878;38879;38880;38881 38880 4 LFTLTALR QLVATGAVRDWDDPRLFTLTALRRRGFPPE RDWDDPRLFTLTALRRRGFPPEAINNFCAR R L F L R R 1 1 0 0 0 0 0 0 0 0 3 0 0 1 0 0 2 0 0 0 0 0 8 0 933.56475 B4DNN3;Q53HS0;A8K3A8;P47897;Q9H3A5;Q9BUZ3;B4DDN1;Q96AW5;A0A1B0GVU9;H7C0R3;A0A1B0GTT3;A0A0U1RQQ5 B4DNN3 466 473 QARS Glutamine--tRNA ligase yes no 2 0.00047588 124.59 2 3 0.95085 1.2684 104.24 4 Median 0.36403 0.51285 22.992 2 0 Median 2.3544 3.0442 18.752 2 0 Median 19308000 11474000 7834200 12768000 9303500 3464900 6540000 2170700 4369400 7050 591 7207 25717;25718;25719;25720;25721 38882;38883;38884;38885;38886;38887 38882 6 LFTNAVESLDEEEK TPFNTDLGENSGIGKLFTNAVESLDEEEKD KLFTNAVESLDEEEKDYYFSNSDSA_____ K L F E K D 1 0 1 1 0 0 4 0 0 0 2 1 0 1 0 1 1 0 0 1 0 0 14 0 1622.7675 Q6P0N0 Q6P0N0 1109 1122 MIS18BP1 Mis18-binding protein 1 yes yes 2 3.032E-09 91.937 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7051 1588 7208 25722 38888 38888 1 LFTTVRPLIEVQLSEEQIR NIKKNKGVKDWPWWKLFTTVRPLIEVQLSE VRPLIEVQLSEEQIRNKDEEIQQLRSKLEK K L F I R N 0 2 0 0 0 2 3 0 0 2 3 0 0 1 1 1 2 0 0 2 0 0 19 1 2270.2634 A0A0D9SFK2;A0A024QZ63;Q92614;B4DYM1;B4E0T8;B4DZ32 A0A0D9SFK2 1238 1256 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 3 1.3287E-07 126.07 4 0.51166 0.70428 32.144 3 Median 0.51166 0.70428 32.144 3 0 Median NaN NaN NaN 0 0 Median 24804000 17379000 7425500 24804000 17379000 7425500 0 0 0 7052 6 7209 25723;25724;25725;25726 38889;38890;38891;38892;38893 38889 5 LFVASNQGALHIVQLSGGSFK LRSALQILFSEDSTKLFVASNQGALHIVQL QGALHIVQLSGGSFKHLHAFQPQSGTVEAM K L F F K H 2 0 1 0 0 2 0 3 1 1 3 1 0 2 0 3 0 0 0 2 0 0 21 0 2172.1691 Q969X6;H3BSH7;A0A0J9YWM9;H3BRM8;A0A0J9YWK2 Q969X6 452 472 CIRH1A Cirhin yes no 2;3 1.7682E-57 156.67 5 2 0.91557 1.1603 16.15 7 Median 0.92497 1.1722 13.347 5 0 Median 0.63402 0.99014 5.8794 2 0 Median 269180000 143830000 125350000 207280000 104850000 102440000 61899000 38983000 22916000 7053 1680 7210 25727;25728;25729;25730;25731;25732;25733 38894;38895;38896;38897;38898;38899;38900;38901;38902;38903;38904;38905;38906 38899 13 LFVEALGQIGPAPPLK ADFSVPLIIDIKCTKLFVEALGQIGPAPPL FVEALGQIGPAPPLKVHVDCMTSQKLVRLP K L F L K V 2 0 0 0 0 1 1 2 0 1 3 1 0 1 3 0 0 0 0 1 0 0 16 0 1648.9552 Q53SY7;F8VPD4;P27708 Q53SY7 1361 1376 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 5.4848E-18 122.7 4 0.38893 0.49302 31.614 2 Median 0.38893 0.49302 31.614 2 0 Median NaN NaN NaN 0 0 Median 18131000 12898000 5232400 18131000 12898000 5232400 0 0 0 7054 1060 7211 25734;25735;25736;25737 38907;38908;38909;38910 38909 4 LFVGGLK REDSARPGAHAKVKKLFVGGLKGDVAEGDL GAHAKVKKLFVGGLKGDVAEGDLIEHFSQF K L F L K G 0 0 0 0 0 0 0 2 0 0 2 1 0 1 0 0 0 0 0 1 0 0 7 0 732.45341 Q13151 Q13151 100 106 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 2 0.01592 91.093 7 0.35243 0.44195 25.367 6 Median 0.35243 0.44195 25.367 6 0 Median NaN NaN NaN 0 0 Median 144980000 110310000 34671000 144980000 110310000 34671000 0 0 0 7055 1464 7212 25738;25739;25740;25741;25742;25743;25744 38911;38912;38913;38914;38915;38916;38917;38918;38919;38920;38921 38918 11 LFVGNLPADITEDEFK LLRRPGEKTYTQRCRLFVGNLPADITEDEF FVGNLPADITEDEFKRLFAKYGEPGEVFIN R L F F K R 1 0 1 2 0 0 2 1 0 1 2 1 0 2 1 0 1 0 0 1 0 0 16 0 1806.904 Q9BSV4;Q86VG2;P23246;Q6PIX2 Q9BSV4 226 241 SFPQ Splicing factor, proline- and glutamine-rich yes no 2 1.5947E-10 136.93 4 2 0.52858 0.66651 97.491 6 Median 0.50125 0.62112 8.8023 4 0 Median 2.7283 4.1215 12.808 2 0 Median 79689000 40251000 39438000 47815000 32568000 15247000 31873000 7683000 24190000 7056 1292 7213 25745;25746;25747;25748;25749;25750 38922;38923;38924;38925;38926;38927;38928 38923 7 LFVGSIPK PGKHLGVCISVANNRLFVGSIPKNKTKENI ISVANNRLFVGSIPKNKTKENILEEFSKVT R L F P K N 0 0 0 0 0 0 0 1 0 1 1 1 0 1 1 1 0 0 0 1 0 0 8 0 859.51674 Q05CK9;Q59GL1;B2R8Z8;O60506;B7Z645;Q0VGD6;Q6MZS5;B2R7W4;O43390;B4DT28;B4DMB1;B4DMD1 Q0VGD6 222 229 SYNCRIP;HNRPR;DKFZp686A13234;HNRNPR Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R no no 2 0.022027 57.281 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2742300 0 2742300 2742300 0 2742300 0 0 0 7057 711;718 7214 25751 38929 38929 1 LFVIAQK KQYNCLTQRIEREKKLFVIAQKIQTRKDLM QRIEREKKLFVIAQKIQTRKDLMDKTQKVK K L F Q K I 1 0 0 0 0 1 0 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 7 0 817.50617 Q9Y3A2 Q9Y3A2 212 218 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 2 0.00042832 148.12 3 2 1.0451 1.2926 14.287 4 Median 1.0636 1.3267 6.265 3 0 Median 0.69694 1.023 NaN 1 0 Median 91978000 44606000 47372000 82263000 37101000 45162000 9714700 7504800 2209900 7058 1814 7215 25752;25753;25754;25755;25756 38930;38931;38932;38933;38934;38935;38936 38931 7 LFVINEVCEMK MPHSKADTKMDRKDKLFVINEVCEMKNCNK RKDKLFVINEVCEMKNCNKCIYFEAKKKQD K L F M K N 0 0 1 0 1 0 2 0 0 1 1 1 1 1 0 0 0 0 0 2 0 0 11 0 1380.6781 Q8TDN6;A0JLQ5;B4E0B8;Q9NUW4 Q8TDN6 100 110 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 2 0.002554 91.584 6 0.94748 1.2057 14.217 6 Median 0.94748 1.2057 14.217 6 0 Median NaN NaN NaN 0 0 Median 49314000 23856000 25458000 49314000 23856000 25458000 0 0 0 7059 1659 7216;7217 25757;25758;25759;25760;25761;25762 38937;38938;38939;38940;38941;38942;38943;38944;38945;38946 38946 738 10 LFVPQESDTLFYHAPPLSAITFK SPTGLSENPTPATEKLFVPQESDTLFYHAP TLFYHAPPLSAITFKRQFMCKLCHRTFKTA K L F F K R 2 0 0 1 0 1 1 0 1 1 3 1 0 3 3 2 2 0 1 1 0 0 23 0 2620.3577 Q9ULJ3 Q9ULJ3 1018 1040 ZBTB21 Zinc finger and BTB domain-containing protein 21 yes yes 3 0.010912 40.779 4 0.67652 0.86216 17.355 4 Median 0.67652 0.86216 17.355 4 0 Median NaN NaN NaN 0 0 Median 18074000 11626000 6448200 18074000 11626000 6448200 0 0 0 7060 1790 7218 25763;25764;25765;25766 38947;38948;38949;38950;38951;38952 38947 6 LFVQDLATR ETVAKELQTLHNLRKLFVQDLATRVKKSAE LHNLRKLFVQDLATRVKKSAEIDSDDTGGS K L F T R V 1 1 0 1 0 1 0 0 0 0 2 0 0 1 0 0 1 0 0 1 0 0 9 0 1061.5869 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;M1V490;M1VPF9;B4DS27 V9HW29 802 810 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5B-RET(NM_020630)_K22;R12;KIF5B-RET(NM_020975)_K22;R12 Kinesin-like protein;Kinesin-1 heavy chain yes no 2 0.039962 69.825 1 0.75627 1.0644 NaN 1 Median 0.75627 1.0644 NaN 1 0 Median NaN NaN NaN 0 0 Median 1402800 729770 673070 1402800 729770 673070 0 0 0 7061 978 7219 25767 38953 38953 1 LFVSDGVPGCLPVLAAAGR ______________________________ DGVPGCLPVLAAAGRARGRAEVLISTVGPE R L F G R A 3 1 0 1 1 0 0 3 0 0 3 0 0 1 2 1 0 0 0 3 0 0 19 0 1898.0084 A8K492;P56192;B4E0E9;A0A024RBA2;F5H2V6;F8VS26;F8W0M7;F8W0S4;F8VZZ9;F8VPL7 A8K492 3 21 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 1.1514E-06 101.89 4 0.51859 0.71475 12.354 4 Median 0.51859 0.71475 12.354 4 0 Median NaN NaN NaN 0 0 Median 20304000 13570000 6734600 20304000 13570000 6734600 0 0 0 7062 602 7220 25768;25769;25770;25771 38954;38955;38956;38957 38955 4 LFVTNDAATILR ______________________________ LEKLFVTNDAATILRELEVQHPAAKMIVMA K L F L R E 2 1 1 1 0 0 0 0 0 1 2 0 0 1 0 0 2 0 0 1 0 0 12 0 1332.7402 Q7Z759;Q53HU0;P50990;H7C4C8 Q7Z759 12 23 CCT8 T-complex protein 1 subunit theta yes no 2 0.0034218 92.239 1 0.25454 0.35962 NaN 1 Median 0.25454 0.35962 NaN 1 0 Median NaN NaN NaN 0 0 Median 3981000 3091900 889110 3981000 3091900 889110 0 0 0 7063 1359 7221 25772 38958 38958 1 LFYLALPPTVYEAVTK NSHMNALHLGSQANRLFYLALPPTVYEAVT FYLALPPTVYEAVTKNIHESCMSQIGWNRI R L F T K N 2 0 0 0 0 0 1 0 0 0 3 1 0 1 2 0 2 0 2 2 0 0 16 0 1824.0073 E9PD92;E7EM57;E7EUI8;Q2VF42;Q2Q9H2;B4DYA7;A8K8D9;P11413;Q0PHS1;Q2Q9B7;A7IZZ3 E9PD92 137 152 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 2 0.0010847 44.188 2 0.7447 0.96182 0.24469 2 Median 0.7447 0.96182 0.24469 2 0 Median NaN NaN NaN 0 0 Median 9926100 6016000 3910100 9926100 6016000 3910100 0 0 0 7064 640 7222 25773;25774 38959;38960 38960 2 LGAGEGGEASVSPEK DQPAARTPRSKKKKKLGAGEGGEASVSPEK LGAGEGGEASVSPEKTSTTSKGKAKRDKAS K L G E K T 2 0 0 0 0 0 3 4 0 0 1 1 0 0 1 2 0 0 0 1 0 0 15 0 1386.6627 E7ETY2;B4DRA2;Q9UFD4;J3KQ96;Q13428 E7ETY2 1367 1381 TCOF1;DKFZp434G1035 Treacle protein no no 2 0.0035602 41.401 2 0.40902 0.5426 NaN 1 Median NaN NaN NaN 0 0 Median 0.40902 0.5426 NaN 1 0 Median 3880300 2969100 911130 0 0 0 3880300 2969100 911130 7065 1016;1135;1469 7223 25775;25776 38961;38962 38961 2 LGALALPR LEEEAAARGRLERTRLGALALPRGDRPGRA GRLERTRLGALALPRGDRPGRAPPAASARP R L G P R G 2 1 0 0 0 0 0 1 0 0 3 0 0 0 1 0 0 0 0 0 0 0 8 0 809.51232 Q6SPF0;E9PIW9 Q6SPF0 292 299 SAMD1 Atherin yes no 2 0.0038715 99.919 3 0.72487 0.97068 26.453 3 Median 0.72487 0.97068 26.453 3 0 Median NaN NaN NaN 0 0 Median 32243000 20059000 12184000 32243000 20059000 12184000 0 0 0 7066 1599 7224 25777;25778;25779 38963;38964;38965 38965 3 LGALTAEEIALK VASIKEKVKKAKNKKLGALTAEEIALKMEA NKKLGALTAEEIALKMEADEKKKKKKK___ K L G L K M 3 0 0 0 0 0 2 1 0 1 3 1 0 0 0 0 1 0 0 0 0 0 12 0 1227.7075 Q13601 Q13601 358 369 KRR1 KRR1 small subunit processome component homolog yes yes 2 0.0020506 66.595 2 0.64967 0.99614 NaN 1 Median NaN NaN NaN 0 0 Median 0.64967 0.99614 NaN 1 0 Median 33151000 16099000 17052000 0 0 0 33151000 16099000 17052000 7067 1473 7225 25780;25781 38966;38967;38968 38966 3 LGAMDIDTHKK SKRKSGGNEVSIEERLGAMDIDTHKKGKED IEERLGAMDIDTHKKGKEDLQTNSFPVLLT R L G K K G 1 0 0 2 0 0 0 1 1 1 1 2 1 0 0 0 1 0 0 0 0 0 11 1 1227.6282 Q15061 Q15061 442 452 WDR43 WD repeat-containing protein 43 yes yes 2 0.020911 53.597 2 0.85545 1.1997 10.364 2 Median NaN NaN NaN 0 0 Median 0.85545 1.1997 10.364 2 0 Median 4776600 2689200 2087400 0 0 0 4776600 2689200 2087400 7068 1505 7226 25782;25783 38969;38970 38970 685 2 LGAMSAAPSQPNSQIR PVVPSVPMASPAPGRLGAMSAAPSQPNSQI GAMSAAPSQPNSQIRQNIRRSLKEILWKRV R L G I R Q 3 1 1 0 0 2 0 1 0 1 1 0 1 0 2 3 0 0 0 0 0 0 16 0 1626.8148 Q9BTC0 Q9BTC0 656 671 DIDO1 Death-inducer obliterator 1 yes yes 2 2.4025E-07 80.014 2 0.66428 0.97892 9.5113 2 Median NaN NaN NaN 0 0 Median 0.66428 0.97892 9.5113 2 0 Median 31996000 19615000 12381000 0 0 0 31996000 19615000 12381000 7069 1713 7227 25784;25785 38971;38972 38971 777 2 LGANILLETFK TSPSLSRMPNQHACKLGANILLETFKIHEM HACKLGANILLETFKIHEMIRQEILEQVLN K L G F K I 1 0 1 0 0 0 1 1 0 1 3 1 0 1 0 0 1 0 0 0 0 0 11 0 1217.702 H3BP78;F8W7R3;B3KNW8;B7ZMF2;Q9NVI1 H3BP78 248 258 FANCI Fanconi anemia group I protein yes no 2 0.00011685 90.108 2 0.39069 0.50135 NaN 1 Median 0.39069 0.50135 NaN 1 0 Median NaN NaN NaN 0 0 Median 4418900 3757200 661700 4418900 3757200 661700 0 0 0 7070 761 7228 25786;25787 38973;38974 38974 2 LGAQALLGAAK DGGVKMGLPRRLAVRLGAQALLGAAKMLLH LAVRLGAQALLGAAKMLLHSEQHPGQLKDN R L G A K M 4 0 0 0 0 1 0 2 0 0 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1011.6077 E7D7X9;A0A024R8U9;P32322;Q2TU78;J3QKT4;J3KQ22;E7D7Y0;A0A1B2JLU7;Q8TBX0;J3QL24 E7D7X9 205 215 PYCR1;PIG45 Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 1, mitochondrial yes no 2 0.0017426 67.993 2 0.76894 1.0483 21.221 2 Median NaN NaN NaN 0 0 Median 0.76894 1.0483 21.221 2 0 Median 7957400 4002100 3955300 0 0 0 7957400 4002100 3955300 7071 204 7229 25788;25789 38975;38976;38977;38978 38978 4 LGASLAFNNIYR KRLYSLALHPNAFKRLGASLAFNNIYREFR FKRLGASLAFNNIYREFREEESLVEQFVFE R L G Y R E 2 1 2 0 0 0 0 1 0 1 2 0 0 1 0 1 0 0 1 0 0 0 12 0 1337.7092 P78527;B4DL41 P78527 1076 1087 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 4.8156E-13 159.37 3 2 0.45989 0.62355 24.934 5 Median 0.43411 0.57817 5.3563 3 0 Median 0.61463 0.91742 6.6525 2 0 Median 93519000 61453000 32066000 61931000 42407000 19524000 31588000 19047000 12541000 7072 1427 7230 25790;25791;25792;25793;25794 38979;38980;38981;38982;38983;38984;38985;38986;38987 38983 9 LGASNSPGQPNSVK QQPEEHRPKIGLSLKLGASNSPGQPNSVKR KLGASNSPGQPNSVKRKKLPVDSVFNKFED K L G V K R 1 0 2 0 0 1 0 2 0 0 1 1 0 0 2 3 0 0 0 1 0 0 14 0 1354.6841 P49756 P49756 672 685 RBM25 RNA-binding protein 25 yes yes 2 2.1913E-09 141.71 3 0.52367 0.65496 25.094 3 Plateau 0.52367 0.65496 25.094 3 0 Plateau NaN NaN NaN 0 0 Median 8502000 5604800 2897200 8502000 5604800 2897200 0 0 0 7073 1355 7231 25795;25796;25797 38988;38989;38990 38988 3 LGATIEHISVSPAGDLFCTSHSDNK EWRDATEKNKEFLPRLGATIEHISVSPAGD SPAGDLFCTSHSDNKIIIIHRNLEASAVIQ R L G N K I 2 0 1 2 1 0 1 2 2 2 2 1 0 1 1 4 2 0 0 1 0 0 25 0 2655.2599 A8K330;Q8IWA0 A8K330 289 313 WDR75 WD repeat-containing protein 75 yes no 3 1.8351E-16 119.18 3 0.88776 1.0833 43.066 3 Median 0.88776 1.0833 43.066 3 0 Median NaN NaN NaN 0 0 Median 28701000 14875000 13826000 28701000 14875000 13826000 0 0 0 7074 588 7232 25798;25799;25800 38991;38992;38993;38994;38995;38996;38997;38998;38999 38992 9 LGAVFNQVAFPLQYTPR VAISTNTLRILALEKLGAVFNQVAFPLQYT AVFNQVAFPLQYTPRKFVIHPESNNLIIIE K L G P R K 2 1 1 0 0 2 0 1 0 0 2 0 0 2 2 0 1 0 1 2 0 0 17 0 1920.0258 A8K6V3;Q15393;B3KQH1;B3KM77 A8K6V3 770 786 SF3B3 Splicing factor 3B subunit 3 yes no 2 5.4132E-25 132.59 3 0.50732 0.70254 6.4911 3 Median 0.50732 0.70254 6.4911 3 0 Median NaN NaN NaN 0 0 Median 21226000 13910000 7315800 21226000 13910000 7315800 0 0 0 7075 628 7233 25801;25802;25803 39000;39001;39002;39003 39002 4 LGAVYDVSHYNALLK ERTEFAHRIWDTLQKLGAVYDVSHYNALLK LGAVYDVSHYNALLKVYLQNEYKFSPTDFL K L G L K V 2 0 1 1 0 0 0 1 1 0 3 1 0 0 0 1 0 0 2 2 0 0 15 0 1661.8777 E5KNY5;P42704;B4DSR0;B8ZZ38;A0A0C4DG06;C9JCA9 E5KNY5 156 170 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 3 0.018546 56.29 2 0.38655 0.4717 NaN 1 Median 0.38655 0.4717 NaN 1 0 Median NaN NaN NaN 0 0 Median 29608000 23030000 6578000 29608000 23030000 6578000 0 0 0 7076 1001 7234 25804;25805 39004;39005 39005 2 LGCFNLTVK AVVLQCGADSLSGDRLGCFNLTVKGHAKCV SLSGDRLGCFNLTVKGHAKCVEVVKTFNLP R L G V K G 0 0 1 0 1 0 0 1 0 0 2 1 0 1 0 0 1 0 0 1 0 0 9 0 1050.5532 Q92769;B3KUJ5 Q92769 272 280 HDAC2 Histone deacetylase 2;Histone deacetylase yes no 2 0.0024601 80.165 1 2 0.81303 1.1105 19.28 2 Median 0.77825 0.96895 NaN 1 0 Median 0.84936 1.2727 NaN 1 0 Median 67021000 31431000 35590000 47249000 25547000 21702000 19772000 5884600 13888000 7077 1675 7235 25806;25807;25808 39006;39007;39008 39007 3 LGCQDAFPEVYDK WEMFDGSLYHKLREKLGCQDAFPEVYDKIC EKLGCQDAFPEVYDKICKAARH________ K L G D K I 1 0 0 2 1 1 1 1 0 0 1 1 0 1 1 0 0 0 1 1 0 0 13 0 1540.6868 Q3LIE7;B7ZAV4;Q15392;H7C4B7;B7Z546;B7Z943;B7Z919 Q3LIE7 408 420 Nbla03646;DHCR24 Delta(24)-sterol reductase yes no 2 0.00011095 77.64 3 0.32294 0.40768 11.224 2 Median 0.32294 0.40768 11.224 2 0 Median NaN NaN NaN 0 0 Median 12532000 9653400 2878900 12532000 9653400 2878900 0 0 0 7078 922 7236 25809;25810;25811 39009;39010;39011 39011 3 LGDALPEEIREPALR AVTEMLQLCGRFVQKLGDALPEEIREPALR LGDALPEEIREPALRDAQWTFESAVQENIS K L G L R D 2 2 0 1 0 0 3 1 0 1 3 0 0 0 2 0 0 0 0 0 0 0 15 1 1677.905 Q53FM2;B2R9C5;Q96IY1;Q5SY74;B4E071 Q53FM2 60 74 C1orf48;NSL1 Kinetochore-associated protein NSL1 homolog yes no 3 0.0025837 37.156 1 2 0.40746 0.59348 22.791 3 Median 0.65123 0.8502 NaN 1 0 Median 0.39169 0.57508 4.4548 2 0 Median 34437000 20374000 14062000 9176900 4646300 4530600 25260000 15728000 9531500 7079 721 7237 25812;25813;25814 39012;39013;39014;39015 39012 4 LGDFFGDPGNPPEFNPSGSK HIQESRFLYPGKNGRLGDFFGDPGNPPEFN GDPGNPPEFNPSGSKDGKYELLTSANEVIV R L G S K D 0 0 2 2 0 0 1 4 0 0 1 1 0 3 4 2 0 0 0 0 0 0 20 0 2077.9381 F5GWD3;Q13889;F5H6X0;F5GXG6;F5GX35;F5H4K7;Q8NEI1 F5GWD3 78 97 GTF2H3 General transcription factor IIH subunit 3 yes no 2 0.0011494 40.113 1 0.54102 0.66778 NaN 1 Median 0.54102 0.66778 NaN 1 0 Median NaN NaN NaN 0 0 Median 2812900 1516900 1296100 2812900 1516900 1296100 0 0 0 7080 1052 7238 25815 39016 39016 1 LGDGLFLQCCEEVAELYPK GRGKVTAVHKANIMKLGDGLFLQCCEEVAE LFLQCCEEVAELYPKIKFETMIIDNCCMQL K L G P K I 1 0 0 1 2 1 3 2 0 0 4 1 0 1 1 0 0 0 1 1 0 0 19 0 2240.0493 A0A087X2E5;A0A087WZN1;O43837 A0A087X2E5 224 242 IDH3B Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 2 0.0018529 88.092 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2212300 2212300 0 2212300 2212300 0 0 0 0 7081 368 7239 25816;25817 39017;39018 39018 2 LGDLGAIDEK IQEKKSGRIPGIYGRLGDLGAIDEKYDVAI GIYGRLGDLGAIDEKYDVAISSCCHALDYI R L G E K Y 1 0 0 2 0 0 1 2 0 1 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1029.5342 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 619 628 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 4.0443E-05 111.06 4 2 0.68575 0.92437 6.6174 6 Median 0.70627 0.91035 3.4093 4 0 Median 0.62191 0.99549 8.8287 2 0 Median 417300000 247380000 169920000 305050000 178720000 126330000 112240000 68652000 43590000 7082 1760 7240 25818;25819;25820;25821;25822;25823 39019;39020;39021;39022;39023;39024;39025;39026;39027;39028;39029;39030 39023 12 LGDPLEAFPVFK AAMDAVCAKVDAANRLGDPLEAFPVFKKYD ANRLGDPLEAFPVFKKYDRNGTQMKKVMLT R L G F K K 1 0 0 1 0 0 1 1 0 0 2 1 0 2 2 0 0 0 0 1 0 0 12 0 1331.7125 F5H2C9;F2YHM7;A0A024R5C6;Q86UY6 F5H2C9 35 46 NAA40;NAT11 N-alpha-acetyltransferase 40 yes no 2 0.00018682 101.66 3 0.796 0.98555 NaN 1 Median 0.796 0.98555 NaN 1 0 Median NaN NaN NaN 0 0 Median 5466500 3699000 1767500 5466500 3699000 1767500 0 0 0 7083 140 7241 25824;25825;25826 39031;39032;39033 39033 3 LGDSQLVK CLTYLDNGVVFVGSRLGDSQLVKLNVDSNE VVFVGSRLGDSQLVKLNVDSNEQGSYVVAM R L G V K L 0 0 0 1 0 1 0 1 0 0 2 1 0 0 0 1 0 0 0 1 0 0 8 0 858.48108 Q16531;B4DSA8;F5GY55;B7Z2A1;B7Z859 Q16531 328 335 DDB1 DNA damage-binding protein 1 yes no 2 0.020355 57.177 1 0.7869 1.1895 NaN 1 Median NaN NaN NaN 0 0 Median 0.7869 1.1895 NaN 1 0 Median 14773000 8152900 6620600 0 0 0 14773000 8152900 6620600 7084 1520 7242 25827 39034 39034 1 LGEHNIDVLEGNEQFINAAK VVSAAHCYKSRIQVRLGEHNIDVLEGNEQF IDVLEGNEQFINAAKIITHPNFNGNTLDND R L G A K I 2 0 3 1 0 1 3 2 1 2 2 1 0 1 0 0 0 0 0 1 0 0 20 0 2210.0968 CON__P00761 CON__P00761 58 77 yes yes 2;3 3.1112E-35 178.47 6 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 104920000 104920000 0 91327000 91327000 0 13595000 13595000 0 + 7085 947 7243 25828;25829;25830;25831;25832;25833;25834 39035;39036;39037;39038;39039;39040;39041 39035 7 LGEINVIGEPFLNVNCEHIK ENVGIDITEPLYMQRLGEINVIGEPFLNVN VIGEPFLNVNCEHIKSFDKNLYRQLISYPQ R L G I K S 0 0 3 0 1 0 3 2 1 3 2 1 0 1 1 0 0 0 0 2 0 0 20 0 2294.1729 B4DLA6;B3KMX0;A0A024R7U6;P33991;E5RFJ8 B4DLA6 157 176 MCM4 DNA replication licensing factor MCM4 yes no 3 1.2966E-24 121.48 4 0.37959 0.48405 5.4158 4 Median 0.37959 0.48405 5.4158 4 0 Median NaN NaN NaN 0 0 Median 56761000 41534000 15227000 56761000 41534000 15227000 0 0 0 7086 185 7244 25835;25836;25837;25838 39042;39043;39044;39045;39046;39047 39045 6 LGEIVTTIPTIGFNVETVEYK GLDAAGKTTILYKLKLGEIVTTIPTIGFNV TIPTIGFNVETVEYKNICFTVWDVGGQDRI K L G Y K N 0 0 1 0 0 0 3 2 0 3 1 1 0 1 1 0 4 0 1 3 0 0 21 0 2322.2359 P18085;C9JPM4;F5H0C7;C9J1Z8;B4DJC8;B4DEB9;A4D0Z3;A0A024R3Q3;A0A024R0Y6;F5H423;B4DLJ3;P84085;P84077;P61204 P18085 39 59 ARF4;ARF3;ARF5;ARF1 ADP-ribosylation factor 4;ADP-ribosylation factor 5;ADP-ribosylation factor 1;ADP-ribosylation factor 3 yes no 2 4.2214E-07 58.268 3 0.42568 0.52768 21.694 3 Median 0.42568 0.52768 21.694 3 0 Median NaN NaN NaN 0 0 Median 62880000 44255000 18625000 62880000 44255000 18625000 0 0 0 7087 1281 7245 25839;25840;25841 39048;39049;39050;39051;39052 39052 5 LGESLQSAER EGQKNIRLLRTELQKLGESLQSAERACCHS TELQKLGESLQSAERACCHSTGAGKLRQAL K L G E R A 1 1 0 0 0 1 2 1 0 0 2 0 0 0 0 2 0 0 0 0 0 0 10 0 1088.5462 O95235 O95235 751 760 KIF20A Kinesin-like protein KIF20A yes yes 2 1.0777E-13 189.7 4 1 0.74684 1.0199 10.469 5 Median 0.74834 1.0212 1.7185 4 0 Median 0.51369 0.81247 NaN 1 0 Median 197750000 115360000 82393000 169870000 97228000 72638000 27884000 18129000 9755000 7088 1215 7246 25842;25843;25844;25845;25846 39053;39054;39055;39056;39057;39058;39059 39054 7 LGESQTLQQFSR RWRRLKAQMIEKRSKLGESQTLQQFSRDVD RSKLGESQTLQQFSRDVDEIEAWISEKLQT K L G S R D 0 1 0 0 0 3 1 1 0 0 2 0 0 1 0 2 1 0 0 0 0 0 12 0 1392.6997 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16 Q13813 1547 1558 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.0033322 119.03 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4117400 0 4117400 4117400 0 4117400 0 0 0 7089 1476 7247 25847 39060 39060 1 LGEYGFQNALIVR EPQNLIKQNCDQFEKLGEYGFQNALIVRYT EKLGEYGFQNALIVRYTRKVPQVSTPTLVE K L G V R Y 1 1 1 0 0 1 1 2 0 1 2 0 0 1 0 0 0 0 1 1 0 0 13 0 1478.7882 CON__P02769 CON__P02769 421 433 yes yes 2 1.0028E-11 142 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22591000 22591000 0 22591000 22591000 0 0 0 0 + 7090 952 7248 25848;25849 39061;39062 39061 2 LGFAGLVQEISFGTTK GGRIVPRFSELTAEKLGFAGLVQEISFGTT GFAGLVQEISFGTTKDKMLVIEQCKNSRAV K L G T K D 1 0 0 0 0 1 1 3 0 1 2 1 0 2 0 1 2 0 0 1 0 0 16 0 1666.893 B4DE30;E7ENZ3;B7ZAR1;B4DDU6;B4DZT5;B4DXI1;E9PCA1;Q9BU08;V9HW37;P48643;B4DX08;B4DYC8;Q96GI1;B4DZY9 B4DE30 278 293 CCT5;HEL-S-69 T-complex protein 1 subunit epsilon yes no 2 4.6681E-13 122.18 4 0.37249 0.47582 12.202 4 Median 0.37249 0.47582 12.202 4 0 Median NaN NaN NaN 0 0 Median 30498000 22120000 8378100 30498000 22120000 8378100 0 0 0 7091 795 7249 25850;25851;25852;25853 39063;39064;39065;39066;39067 39065 5 LGFHLPLEVAYQR LLDAQLATGGIVDPRLGFHLPLEVAYQRGY PRLGFHLPLEVAYQRGYLNKDTHDQLSEPS R L G Q R G 1 1 0 0 0 1 1 1 1 0 3 0 0 1 1 0 0 0 1 1 0 0 13 0 1541.8354 Q15149;D3DWL0;Q96IE3 Q15149 3951 3963 PLEC;PLEC1 Plectin yes no 3 3.6904E-12 112.64 3 2 0.75922 1.0516 64.501 5 Median 0.64065 0.86927 11.49 3 0 Median 1.9887 2.9025 23.944 2 0 Median 197130000 108000000 89127000 167590000 99614000 67981000 29533000 8386400 21146000 7092 1507 7250 25854;25855;25856;25857;25858 39068;39069;39070;39071;39072;39073;39074;39075;39076;39077 39071 10 LGGAVLSFSEATSSVQK VSTRTSSSFAAAMARLGGAVLSFSEATSSV GAVLSFSEATSSVQKGESLADSVQTMSCYA R L G Q K G 2 0 0 0 0 1 1 2 0 0 2 1 0 1 0 4 1 0 0 2 0 0 17 0 1679.873 Q53SY7;F8VPD4;P27708;H7C2E4 Q53SY7 1913 1929 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 1.8286E-05 100.04 2 0.21331 0.28058 NaN 1 Median 0.21331 0.28058 NaN 1 0 Median NaN NaN NaN 0 0 Median 3109800 1975600 1134200 3109800 1975600 1134200 0 0 0 7093 1060 7251 25859;25860 39078;39079 39078 2 LGGEVSCLVAGTK SLAPITLNTITAATRLGGEVSCLVAGTKCD TRLGGEVSCLVAGTKCDKVAQDLCKVAGIA R L G T K C 1 0 0 0 1 0 1 3 0 0 2 1 0 0 0 1 1 0 0 2 0 0 13 0 1289.6649 A0A0S2Z3L0;P13804;H0YKF0;H0YLU7;A0A0S2Z3M4;J3KN60 A0A0S2Z3L0 47 59 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 2 0.01757 68.44 1 0.37928 0.49044 NaN 1 Median 0.37928 0.49044 NaN 1 0 Median NaN NaN NaN 0 0 Median 1849000 1372000 477020 1849000 1372000 477020 0 0 0 7094 455 7252 25861 39080 39080 1 LGGHGPSFPLK GKEDGSGDRGDGPFRLGGHGPSFPLKGITE GPFRLGGHGPSFPLKGITEQQKEGLEIVKM R L G L K G 0 0 0 0 0 0 0 3 1 0 2 1 0 1 2 1 0 0 0 0 0 0 11 0 1108.6029 P13010;Q53T09 P13010 185 195 XRCC5 X-ray repair cross-complementing protein 5 yes no 2;3 0.0017378 68.016 3 1 0.55902 0.78645 18.953 4 Median 0.58344 0.76365 19.31 3 0 Median 0.53562 0.8693 NaN 1 0 Median 230780000 146730000 84044000 176270000 112670000 63596000 54509000 34061000 20448000 7095 1262 7253 25862;25863;25864;25865 39081;39082;39083;39084;39085 39084 5 LGGIPVGVVAVETR IMQPWAQTVVVGRARLGGIPVGVVAVETRT RLGGIPVGVVAVETRTVELSIPADPANLDS R L G T R T 1 1 0 0 0 0 1 3 0 1 1 0 0 0 1 0 1 0 0 4 0 0 14 0 1365.798 A0A024R0Y2;B2ZZ90;Q13085;B4DIG6;B4DIW1;B4DWK9;B4DIR2;Q7Z5W8;Q59FY4 A0A024R0Y2 1900 1913 hCG_30204;ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 2 0.0058641 50.353 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2745600 2745600 0 2745600 2745600 0 0 0 0 7096 43 7254 25866 39086 39086 1 LGGLRPESPESLTSVSR ______________________________ GLRPESPESLTSVSRTRRALVEFESNPEET R L G S R T 0 2 0 0 0 0 2 2 0 0 3 0 0 0 2 4 1 0 0 1 0 0 17 1 1783.9428 Q9H6F5;H0YG79;Q6ZW18 Q9H6F5 11 27 CCDC86 Coiled-coil domain-containing protein 86 yes no 3 0.0007155 71.781 2 0.53954 0.73562 10.35 2 Median 0.53954 0.73562 10.35 2 0 Median NaN NaN NaN 0 0 Median 23047000 14312000 8735500 23047000 14312000 8735500 0 0 0 7097 1737 7255 25867;25868 39087;39088 39088 2 LGGLTQAPGNPVLAVQINQDK ______________________________ APGNPVLAVQINQDKNFAFLEFRSVDETTQ R L G D K N 2 0 2 1 0 3 0 3 0 1 3 1 0 0 2 0 1 0 0 2 0 0 21 0 2132.159 K7ENG2;B5BU25;P26368 K7ENG2 11 31 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 2 1.5938E-10 125.33 4 0.8045 1.0251 1.015 2 Median 0.8045 1.0251 1.015 2 0 Median NaN NaN NaN 0 0 Median 22323000 16998000 5324700 22323000 16998000 5324700 0 0 0 7098 893 7256 25869;25870;25871;25872 39089;39090;39091;39092 39090 4 LGGSAVISLEGKPL NCYEEVKDRCTLAEKLGGSAVISLEGKPL_ KLGGSAVISLEGKPL_______________ K L G P L - 1 0 0 0 0 0 1 3 0 1 3 1 0 0 1 2 0 0 0 1 0 0 14 1 1339.7711 G3V1A4;V9HWI5;E9PK25;P23528 G3V1A4 136 149 CFL1;HEL-S-15 Cofilin-1 yes no 2 5.7565E-17 156.58 4 0.69575 0.87823 5.8228 4 Median 0.69575 0.87823 5.8228 4 0 Median NaN NaN NaN 0 0 Median 108760000 66455000 42301000 108760000 66455000 42301000 0 0 0 7099 1037 7257 25873;25874;25875;25876 39093;39094;39095;39096;39097;39098;39099;39100 39097 8 LGGSPFGPAGTGK TDRCYLTMTQALEARLGGSPFGPAGTGKTE ARLGGSPFGPAGTGKTESVKALGHQLGRFV R L G G K T 1 0 0 0 0 0 0 5 0 0 1 1 0 1 2 1 1 0 0 0 0 0 13 0 1144.5877 Q14204;Q92862 Q14204 1900 1912 DYNC1H1;Dnchc1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.05091 35.652 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1228400 0 1228400 0 0 0 1228400 0 1228400 7100 1483 7258 25877 39101 39101 1 LGGTIDDCELVEGLVLTQK TATSVDLRDIKIVKKLGGTIDDCELVEGLV IDDCELVEGLVLTQKVSNSGITRVEKAKIG K L G Q K V 0 0 0 2 1 1 2 3 0 1 4 1 0 0 0 0 2 0 0 2 0 0 19 0 2059.0507 B7Z9L0;B7Z2Z8;A8K3C3;P50991;B7Z2F4 B7Z9L0 158 176 CCT4 T-complex protein 1 subunit delta yes no 2 4.1968E-10 135.37 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1434500 1434500 0 1434500 1434500 0 0 0 0 7101 593 7259 25878;25879 39102;39103 39102 2 LGHELQQAGLK QLQKENKELRAEAERLGHELQQAGLKTKEA EAERLGHELQQAGLKTKEAEQTCRHLTAQV R L G L K T 1 0 0 0 0 2 1 2 1 0 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1192.6564 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;K4DIE0;Q4LE64;Q14980 Q4LE64 1641 1651 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2;3 0.00037051 123.11 3 2 0.62205 0.81016 40.501 5 Median 0.7927 0.97351 27.831 3 0 Median 0.36413 0.54369 7.7818 2 0 Median 68997000 43150000 25846000 51201000 30411000 20790000 17796000 12740000 5056300 7102 148;1499 7260 25880;25881;25882;25883;25884 39104;39105;39106;39107;39108 39104 5 LGHFAPVDAVADQR RRTAFMEKVRVLVARLGHFAPVDAVADQRA RLGHFAPVDAVADQRAKDFIHDSLPPVLTD R L G Q R A 3 1 0 2 0 1 0 1 1 0 1 0 0 1 1 0 0 0 0 2 0 0 14 0 1494.7579 A0A0A8K8C0;Q9H6W3 A0A0A8K8C0 488 501 URLC2;NO66 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 yes no 3 0.047472 9.5697 1 0.44019 0.59499 NaN 1 Median 0.44019 0.59499 NaN 1 0 Median NaN NaN NaN 0 0 Median 5548600 4185600 1362900 5548600 4185600 1362900 0 0 0 7103 411 7261 25885 39109 39109 1 LGHQLVAR L G A R 1 1 0 0 0 1 0 1 1 0 2 0 0 0 0 0 0 0 0 1 0 0 8 0 892.52428 REV__H7C0U5 yes no 2 0.0029852 105.27 7 1 0.6829 0.94257 9.1324 8 Median 0.68442 0.9405 9.8056 7 0 Median 0.57242 0.94464 NaN 1 0 Median 747650000 436390000 311260000 672340000 389300000 283030000 75316000 47088000 28229000 + 7104 1840 7262 25886;25887;25888;25889;25890;25891;25892;25893 39110;39111;39112;39113;39114;39115;39116;39117;39118;39119;39120;39121 39117 12 LGHSFSLVGNK LKAKTPKNGPPPCPRLGHSFSLVGNKCYLF PCPRLGHSFSLVGNKCYLFGGLANDSEDPK R L G N K C 0 0 1 0 0 0 0 2 1 0 2 1 0 1 0 2 0 0 0 1 0 0 11 0 1157.6193 A6NEM2;P51610;Q05C05 A6NEM2 138 148 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 3 0.001474 78.513 1 0.96146 1.2181 NaN 1 Median 0.96146 1.2181 NaN 1 0 Median NaN NaN NaN 0 0 Median 17001000 7924100 9077300 17001000 7924100 9077300 0 0 0 7105 564 7263 25894 39122 39122 1 LGHTDILVGVK ETDVVSNTSGSARVKLGHTDILVGVKAEMG ARVKLGHTDILVGVKAEMGTPKLEKPNEGY K L G V K A 0 0 0 1 0 0 0 2 1 1 2 1 0 0 0 0 1 0 0 2 0 0 11 0 1150.671 B2RDZ9;A0A024R2P7;Q15024;B4DIU0 B2RDZ9 53 63 EXOSC7 Exosome complex component RRP42 yes no 3 0.00077141 99.973 3 0.93002 1.1771 36.683 3 Plateau 0.93002 1.1771 36.683 3 0 Plateau NaN NaN NaN 0 0 Median 22025000 12488000 9536400 22025000 12488000 9536400 0 0 0 7106 91 7264 25895;25896;25897 39123;39124;39125;39126;39127 39124 5 LGIGGTESVSTPTLLESIQHVFIK ADGKLYATGYGAGGRLGIGGTESVSTPTLL STPTLLESIQHVFIKKVAVNSGGKHCLALS R L G I K K 0 0 0 0 0 1 2 3 1 3 3 1 0 1 1 3 3 0 0 2 0 0 24 0 2525.3741 A0A0J9YVP0;O95714 A0A0J9YVP0 1264 1287 HERC2 E3 ubiquitin-protein ligase HERC2 yes no 3 0.0094456 72.771 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7107 441 7265 25898 39128 39128 1 LGIHEDSTNR ENYKKFYEAFSKNLKLGIHEDSTNRRRLSE SKNLKLGIHEDSTNRRRLSELLRYHTSQSG K L G N R R 0 1 1 1 0 0 1 1 1 1 1 0 0 0 0 1 1 0 0 0 0 0 10 0 1140.5523 A0A024RD80;P08238;B4DMA2;B4DGL0;Q9H6X9;A8K3W9 A0A024RD80 439 448 HSP90AB1 Heat shock protein HSP 90-beta no no 2;3 1.8288E-26 147.24 7 2 0.44736 0.61006 111.79 5 Median 0.47901 0.65916 8.4125 4 0 Linear 4.545 7.0251 NaN 1 0 Median 416950000 310940000 106010000 386090000 306510000 79572000 30861000 4427500 26434000 7108 312;598 7266 25899;25900;25901;25902;25903;25904;25905;25906;25907 39129;39130;39131;39132;39133;39134;39135;39136;39137;39138;39139;39140 39136 12 LGIHEDSTNRR ENYKKFYEAFSKNLKLGIHEDSTNRRRLSE KNLKLGIHEDSTNRRRLSELLRYHTSQSGD K L G R R R 0 2 1 1 0 0 1 1 1 1 1 0 0 0 0 1 1 0 0 0 0 0 11 1 1296.6535 A0A024RD80;P08238;B4DMA2;B4DGL0;Q9H6X9;A8K3W9 A0A024RD80 439 449 HSP90AB1 Heat shock protein HSP 90-beta no no 3 0.0001349 91.265 3 0.43875 0.59451 25.508 2 Median 0.43875 0.59451 25.508 2 0 Median NaN NaN NaN 0 0 Median 20684000 16073000 4611500 20684000 16073000 4611500 0 0 0 7109 312;598 7267 25908;25909;25910 39141;39142;39143;39144;39145 39144 5 LGILDLLDEECK DFYDNQPCINLIESKLGILDLLDEECKMPK ESKLGILDLLDEECKMPKGTDDTWAQKLYN K L G C K M 0 0 0 2 1 0 2 1 0 1 4 1 0 0 0 0 0 0 0 0 0 0 12 0 1416.717 A8CDT9;A0A087WY00;G3V394;F8WE88;F8W6H6;Q9Y4I1;B4E147;Q59FF5;Q9ULV0;Q7Z7A5;B3KSA2 A8CDT9 503 514 MYO5A;MYO5B Unconventional myosin-Va;Unconventional myosin-Vb yes no 2 2.6995E-32 214.71 4 0.80167 1.0397 21.469 3 Median 0.80167 1.0397 21.469 3 0 Median NaN NaN NaN 0 0 Median 9992500 4897100 5095400 9992500 4897100 5095400 0 0 0 7110 361 7268 25911;25912;25913;25914 39146;39147;39148;39149;39150;39151 39146 6 LGIPQNTILVQTLLR MQYKYLLFSLHAIAKLGIPQNTILVQTLLR LGIPQNTILVQTLLRVTQERINECDEICLS K L G L R V 0 1 1 0 0 2 0 1 0 2 4 0 0 0 1 0 2 0 0 1 0 0 15 0 1678.0141 B3KMB8;A0A024R419;Q9NYY8 B3KMB8 242 256 KIAA0971;FASTKD2 FAST kinase domain-containing protein 2 yes no 2 0.00038538 55.452 1 0.39488 0.53065 NaN 1 Median 0.39488 0.53065 NaN 1 0 Median NaN NaN NaN 0 0 Median 1539500 1088200 451330 1539500 1088200 451330 0 0 0 7111 115 7269 25915 39152 39152 1 LGIQGSYFCSQECFK GCSSEAKLQCPTCIKLGIQGSYFCSQECFK LGIQGSYFCSQECFKGSWATHKLLHKKAKD K L G F K G 0 0 0 0 2 2 1 2 0 1 1 1 0 2 0 2 0 0 1 0 0 0 15 0 1822.8018 P53582;H0YAI3 P53582 28 42 METAP1 Methionine aminopeptidase 1 yes no 2 0.00025125 71.558 3 0.91378 1.1573 22.585 2 Median 0.91378 1.1573 22.585 2 0 Median NaN NaN NaN 0 0 Median 11995000 5405600 6589200 11995000 5405600 6589200 0 0 0 7112 1369 7270 25916;25917;25918 39153;39154;39155;39156;39157;39158 39156 6 LGIQLDFEK EIAKKRLEFENQKTRLGIQLDFEKNQLKED ENQKTRLGIQLDFEKNQLKEDQDKVHMWEQ R L G E K N 0 0 0 1 0 1 1 1 0 1 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1061.5757 Q14683;G8JLG1;Q6P2R1;Q6MZR8;A8K7A6 Q14683 817 825 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 9.0847E-06 137.9 3 2 0.55671 0.711 4.8685 2 Median 0.55671 0.711 4.8685 2 0 Median NaN NaN NaN 0 0 Median 18452000 13648000 4804100 18452000 13648000 4804100 0 0 0 7113 1492 7271 25919;25920;25921;25922;25923 39159;39160;39161;39162;39163 39160 5 LGIYDADGDGDFDVDDAK VVWFDLVDYEEVLGKLGIYDADGDGDFDVD YDADGDGDFDVDDAKVLLGLKERSTSEPAV K L G A K V 2 0 0 7 0 0 0 3 0 1 1 1 0 1 0 0 0 0 1 1 0 0 18 0 1899.801 E5RG29;B7ZM96;B4DQ07;A0A0A0MSK8;Q6PJH4;E5RG56;B3GQE5;B8Y0L3;Q12797;E5RHJ2;E5RHK2;G3XAN5 E5RG29 58 75 ASPH Aspartyl/asparaginyl beta-hydroxylase yes no 2 7.2348E-06 107.46 3 1.0351 1.3126 NaN 1 Median 1.0351 1.3126 NaN 1 0 Median NaN NaN NaN 0 0 Median 7537200 3970600 3566700 7537200 3970600 3566700 0 0 0 7114 398 7272 25924;25925;25926 39164;39165;39166;39167 39167 4 LGLAPQIQDLYGK RCIYCIHALSLYLFKLGLAPQIQDLYGKVD FKLGLAPQIQDLYGKVDFTEEEINNMKTEL K L G G K V 1 0 0 1 0 2 0 2 0 1 3 1 0 0 1 0 0 0 1 0 0 0 13 0 1414.782 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;Q6P1N4;Q5FWG8;Q05DN7;H0YKA5 A4QPB0 162 174 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.0083694 75.416 3 0.4752 0.61797 20.781 3 Median 0.4752 0.61797 20.781 3 0 Median NaN NaN NaN 0 0 Median 10741000 6779300 3962200 10741000 6779300 3962200 0 0 0 7115 287 7273 25927;25928;25929 39168;39169;39170 39168 3 LGLDYEER LSRPNAQELPSMYQRLGLDYEERVLPSIVN LPSMYQRLGLDYEERVLPSIVNEVLKSVVA R L G E R V 0 1 0 1 0 0 2 1 0 0 2 0 0 0 0 0 0 0 1 0 0 0 8 0 993.47673 J3KPX7;Q99623;F5GY37;B4DW05;F5GWA7;F5H3X6 J3KPX7 124 131 PHB2 Prohibitin-2 yes no 2 0.0038915 99.799 3 2 0.56622 0.77716 68.605 5 Median 0.56581 0.77115 4.5704 3 0 Median 1.7127 2.6349 0.55374 2 0 Median 339720000 204520000 135200000 298530000 188920000 109610000 41187000 15603000 25584000 7116 1133 7274 25930;25931;25932;25933;25934 39171;39172;39173;39174;39175;39176;39177;39178;39179;39180 39177 10 LGLEALAANHQQLFTDGR ALETERVRANARALRLGLEALAANHQQLFT EALAANHQQLFTDGRSWGSFTVLDNSAWYQ R L G G R S 3 1 1 1 0 2 1 2 1 0 4 0 0 1 0 0 1 0 0 0 0 0 18 0 1953.0068 H0YHS6;Q9Y2Z4 H0YHS6 120 137 YARS2 Tyrosine--tRNA ligase;Tyrosine--tRNA ligase, mitochondrial yes no 3 1.0009E-17 115.58 4 0.4642 0.62761 37.545 4 Median 0.4642 0.62761 37.545 4 0 Median NaN NaN NaN 0 0 Median 36109000 23420000 12689000 36109000 23420000 12689000 0 0 0 7117 1101 7275 25935;25936;25937;25938 39181;39182;39183;39184 39183 4 LGLEFFDQPAVPLAR YRSIYFSSPKGHLTRLGLEFFDQPAVPLAR LGLEFFDQPAVPLARAFLGQVLVRRLPNGT R L G A R A 2 1 0 1 0 1 1 1 0 0 3 0 0 2 2 0 0 0 0 1 0 0 15 0 1671.8984 A2IDA3;Q1W6H1;P29372 A2IDA3 69 83 MPG DNA-3-methyladenine glycosylase yes no 2 3.4238E-06 118.23 3 0.75578 1.0142 15.007 3 Median 0.75578 1.0142 15.007 3 0 Median NaN NaN NaN 0 0 Median 11775000 6377500 5397100 11775000 6377500 5397100 0 0 0 7118 537 7276 25939;25940;25941 39185;39186;39187;39188;39189 39186 5 LGLELGK SGSSHQDLSQKIADRLGLELGKVVTKKFSN LSQKIADRLGLELGKVVTKKFSNQETCVEI R L G G K V 0 0 0 0 0 0 1 2 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 728.44324 Q53FW2;P60891;A0A0B4J207;P21108;B1ALA7;Q15244;A6NMS2;D3YTJ7;B2R860;A0A140VK41;P11908 Q53FW2 23 29 PRPS1;PRPS1L1;PRPS2 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3;Ribose-phosphate pyrophosphokinase 2 no no 2 0.014495 99.384 3 0.63989 0.81135 NaN 1 Median 0.63989 0.81135 NaN 1 0 Median NaN NaN NaN 0 0 Median 12070000 9027400 3042300 12070000 9027400 3042300 0 0 0 7119 1390;506 7277 25942;25943;25944 39190;39191;39192;39193 39191 4 LGLGEGAEEK SEGKAYSLGRAEYGRLGLGEGAEEKSIPTL AEYGRLGLGEGAEEKSIPTLISRLPAVSSV R L G E K S 1 0 0 0 0 0 3 3 0 0 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1001.5029 Q5T081;A0A0S2Z3I4;A0A0S2Z404;P18754;C9JW69 Q5T081 326 335 RCC1 Regulator of chromosome condensation yes no 2 0.013719 81.95 3 1 0.86585 1.0907 1.7664 2 Median 0.86585 1.0907 1.7664 2 0 Median NaN NaN NaN 0 0 Median 31010000 22863000 8147700 17524000 9376300 8147700 13486000 13486000 0 7120 453 7278 25945;25946;25947;25948 39194;39195;39196;39197;39198;39199 39197 6 LGLGGNAPVSIPQQSQSVK VKSVGQGYSVGQSMRLGLGGNAPVSIPQQS GNAPVSIPQQSQSVKQLLPSGNGRSYGLGS R L G V K Q 1 0 1 0 0 3 0 3 0 1 2 1 0 0 2 3 0 0 0 2 0 0 19 0 1879.0163 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 349 367 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 2.9968E-31 173.25 4 2 0.82322 1.0313 25.493 6 Median 0.81553 1.0173 3.1645 4 0 Median 1.0343 1.6522 0.95466 2 0 Median 161550000 82152000 79401000 72873000 38958000 33915000 88681000 43195000 45486000 7121 729 7279 25949;25950;25951;25952;25953;25954 39200;39201;39202;39203;39204;39205;39206;39207;39208;39209;39210;39211 39204 12 LGLGLEFQA SALLDGKNVNAGGHKLGLGLEFQA______ NAGGHKLGLGLEFQA_______________ K L G Q A - 1 0 0 0 0 1 1 2 0 0 3 0 0 1 0 0 0 0 0 0 0 0 9 0 946.51238 A0A1L1UHR1;P21796;B3KTS5;B4DEI3 A0A1L1UHR1 275 283 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 1 1.1291E-05 161.9 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71275000 0 0 71275000 0 0 0 0 0 7122 524 7280 25955;25956 39212;39213 39212 2 LGLHVTPSNVDQVSTPPAAK AGTRLQAFFHIQAQKLGLHVTPSNVDQVST TPSNVDQVSTPPAAKKSRI___________ K L G A K K 2 0 1 1 0 1 0 1 1 0 2 1 0 0 3 2 2 0 0 3 0 0 20 0 2030.0797 D3DS96;Q9NRL2 D3DS96 1532 1551 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A no no 3 4.5991E-07 42.123 1 0.34466 0.47801 NaN 1 Median NaN NaN NaN 0 0 Median 0.34466 0.47801 NaN 1 0 Median 5621800 4093300 1528500 0 0 0 5621800 4093300 1528500 7123 979 7281 25957 39214 39214 1 LGLIPLISDDIVDK DANSSVLHDEFIAHRLGLIPLISDDIVDKL RLGLIPLISDDIVDKLQYSRDCTCEEFCPE R L G D K L 0 0 0 3 0 0 0 1 0 3 3 1 0 0 1 1 0 0 0 1 0 0 14 0 1509.8654 Q6FGR6;P19387;B7Z6D1;B7Z377 Q6FGR6 68 81 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes no 2 1.7332E-06 115 4 0.95822 1.2032 3.5016 3 Median 0.95822 1.2032 3.5016 3 0 Median NaN NaN NaN 0 0 Median 30264000 16163000 14101000 30264000 16163000 14101000 0 0 0 7124 1283 7282 25958;25959;25960;25961 39215;39216;39217;39218;39219 39218 5 LGLLDTQTSQVLTAVDK DPVHGVHLPQAAACRLGLLDTQTSQVLTAV LLDTQTSQVLTAVDKDNKFFFDPSARDQVT R L G D K D 1 0 0 2 0 2 0 1 0 0 4 1 0 0 0 1 3 0 0 2 0 0 17 0 1800.9833 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 1382 1398 EPPK1 Epiplakin no no 2 2.883E-10 94.688 1 0.69299 0.87525 NaN 1 Median 0.69299 0.87525 NaN 1 0 Median NaN NaN NaN 0 0 Median 8504700 5241000 3263700 8504700 5241000 3263700 0 0 0 7125 373;1386 7283 25962 39220;39221 39221 2 LGLLGGK RKKLRGKKMAPLKIKLGLLGGKRKKGGSYV KMAPLKIKLGLLGGKRKKGGSYVFQSDEGP K L G G K R 0 0 0 0 0 0 0 3 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 656.42211 Q12873;I3L1I4;H7C2H0 Q12873 296 302 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 2 0.032397 61.123 1 1.0363 1.2889 NaN 1 Median 1.0363 1.2889 NaN 1 0 Median NaN NaN NaN 0 0 Median 8027600 4799900 3227600 8027600 4799900 3227600 0 0 0 7126 1458 7284 25963 39222 39222 1 LGLLGLPAPK SYVKQMERESREHLRLGLLGLPAPKNDFEI REHLRLGLLGLPAPKNDFEIVLPENAEKEL R L G P K N 1 0 0 0 0 0 0 2 0 0 4 1 0 0 2 0 0 0 0 0 0 0 10 0 977.62735 B4DSH1;B3KY60;Q99459 B4DSH1 451 460 CDC5L Cell division cycle 5-like protein yes no 2 0.0017865 92.47 4 2 0.92416 1.1862 23.479 5 Median 0.91973 1.1571 25.089 4 0 Median 1.1626 1.5653 NaN 1 0 Median 19061000 10342000 8719200 15856000 8486400 7369400 3205400 1855600 1349800 7127 792 7285 25964;25965;25966;25967;25968;25969 39223;39224;39225;39226;39227;39228 39228 6 LGLLLHDSIQIPR FKQVASSTGFCDQRRLGLLLHDSIQIPRQL RRLGLLLHDSIQIPRQLGEVASFGGSNIEP R L G P R Q 0 1 0 1 0 1 0 1 1 2 4 0 0 0 1 1 0 0 0 0 0 0 13 0 1473.8667 A0A0S2Z3B2;H0Y3E8;B4DSV7;A0A0S2Z3B5;A0A0S2Z3J7;Q14205;E7EQR9;F5GZY3;E7EQS5;A1L0U9;F8VX32;E7ESB2;A7E212;H0Y304;Q59HC3;A0A087WV90;E9PDN5;A0A087WTU7;A0A075B6G3;P11532 A0A0S2Z3B2 166 178 DMD;dystrophin Dystrophin yes no 3 0.00043082 61.375 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1807900 1807900 0 1807900 1807900 0 0 0 0 7128 326 7286 25970 39229 39229 1 LGLPPLTPEQQEALQK TDSIKMENGQSTAAKLGLPPLTPEQQEALQ GLPPLTPEQQEALQKAKKYAMEQSIKSVLV K L G Q K A 1 0 0 0 0 3 2 1 0 0 4 1 0 0 3 0 1 0 0 0 0 0 16 0 1760.9672 A0A0J9YYL3;A0A0J9YXJ8;A0A0J9YVP6;A0A0J9YXX5;Q9UHX1;E9PL19;E9PMU7;E9PN18;A0A0J9YVR6;E9PQ56;A0A0J9YWM1;H0YEM1 A0A0J9YYL3 17 32 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 2 0.00094707 100.09 3 0.34187 0.44774 NaN 1 Median 0.34187 0.44774 NaN 1 0 Median NaN NaN NaN 0 0 Median 8671900 7524700 1147200 8671900 7524700 1147200 0 0 0 7129 442 7287 25971;25972;25973 39230;39231;39232 39231 3 LGLQSLR QDLPNAMAISEMTDKLGLQSLRNRTWYVQA AISEMTDKLGLQSLRNRTWYVQATCATQGT K L G L R N 0 1 0 0 0 1 0 1 0 0 3 0 0 0 0 1 0 0 0 0 0 0 7 0 785.47594 P18085;C9JAK5;U3KQF2 P18085 143 149 ARF4 ADP-ribosylation factor 4 yes no 2 0.017169 101.21 3 1 0.40114 0.5411 151.46 4 Median 0.38389 0.52116 22.606 3 0 Median 7.012 9.619 NaN 1 0 Median 42382000 27230000 15153000 36634000 26394000 10240000 5748700 836030 4912700 7130 1281 7288 25974;25975;25976;25977 39233;39234;39235;39236;39237 39236 5 LGLQYSQGLVSGSNAR FMSIPSSVIHPAMVRLGLQYSQGLVSGSNA GLQYSQGLVSGSNARCIALLRALQQVIQDY R L G A R C 1 1 1 0 0 2 0 3 0 0 3 0 0 0 0 3 0 0 1 1 0 0 16 0 1648.8533 Q9Y3W7;Q71US4;A0A087WTA5;E7ERK9;Q9UI10;H7C2L8;A0A087WW69;Q9HBP7;B4DUP5 Q9Y3W7 81 96 DKFZp586J0119;EIF2B4 Translation initiation factor eIF-2B subunit delta yes no 2 0.047053 68.034 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 893810 893810 0 893810 893810 0 0 0 0 7131 332 7289 25978 39238 39238 1 LGLSVFTHHR VGRVAMSREDKEAAKLGLSVFTHHRVESGG KEAAKLGLSVFTHHRVESGGPGTSAASARR K L G H R V 0 1 0 0 0 0 0 1 2 0 2 0 0 1 0 1 1 0 0 1 0 0 10 0 1165.6356 Q9BU76 Q9BU76 143 152 MMTAG2 Multiple myeloma tumor-associated protein 2 yes yes 3 0.020017 55.084 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1528300 1528300 0 1528300 1528300 0 0 0 0 7132 1715 7290 25979 39239 39239 1 LGLVGVNLTLDGVK NLVVKPDQLIKRRGKLGLVGVNLTLDGVKS KLGLVGVNLTLDGVKSWLKPRLGQEATVGK K L G V K S 0 0 1 1 0 0 0 3 0 0 4 1 0 0 0 0 1 0 0 3 0 0 14 0 1396.829 A0A024R1Y2;A0A024R1T9;Q4LE36;P53396;K7ESG8 A0A024R1Y2 69 82 ACLY;ACLY variant protein ATP-citrate synthase yes no 2 0.00067469 56.225 3 0.62856 0.79334 16.447 3 Median 0.62856 0.79334 16.447 3 0 Median NaN NaN NaN 0 0 Median 22265000 12963000 9302200 22265000 12963000 9302200 0 0 0 7133 69 7291 25980;25981;25982 39240;39241;39242;39243;39244 39242 5 LGLVIPSSGSGSGNQSIDR GNGQGEDRNLLYYSKLGLVIPSSGSGSGNQ IPSSGSGSGNQSIDRSGPLVKSLLRRSLSM K L G D R S 0 1 1 1 0 1 0 4 0 2 2 0 0 0 1 5 0 0 0 1 0 0 19 0 1842.9436 Q9ULJ3;Q5H9S0;B4DTN6 Q9ULJ3 313 331 ZBTB21;DKFZp781N1974 Zinc finger and BTB domain-containing protein 21 yes no 2 9.5945E-05 66.004 2 0.58978 0.82925 18.315 2 Median 0.58978 0.82925 18.315 2 0 Median NaN NaN NaN 0 0 Median 7869200 5104000 2765200 7869200 5104000 2765200 0 0 0 7134 1790 7292 25983;25984 39245;39246 39246 2 LGNDFHTNK VKKAARVIIEKYYTRLGNDFHTNKRVCEEI EKYYTRLGNDFHTNKRVCEEIAIIPSKKLR R L G N K R 0 0 2 1 0 0 0 1 1 0 1 1 0 1 0 0 1 0 0 0 0 0 9 0 1044.4989 H0YN88;A0A075B716;P08708;H0YN73;H3BNC9 H0YN88 24 32 RPS17 40S ribosomal protein S17 yes no 2 2.123E-11 151.44 1 0.7672 0.97308 NaN 1 Median 0.7672 0.97308 NaN 1 0 Median NaN NaN NaN 0 0 Median 13454000 8128300 5325500 13454000 8128300 5325500 0 0 0 7135 327 7293 25985 39247 39247 1 LGNDFHTNKR VKKAARVIIEKYYTRLGNDFHTNKRVCEEI KYYTRLGNDFHTNKRVCEEIAIIPSKKLRN R L G K R V 0 1 2 1 0 0 0 1 1 0 1 1 0 1 0 0 1 0 0 0 0 0 10 1 1200.6 H0YN88;A0A075B716;P08708;H0YN73;H3BNC9 H0YN88 24 33 RPS17 40S ribosomal protein S17 yes no 2;3 0.00068762 68.657 2 0.65533 0.84865 1.6502 2 Median 0.65533 0.84865 1.6502 2 0 Median NaN NaN NaN 0 0 Median 18911000 11396000 7515300 18911000 11396000 7515300 0 0 0 7136 327 7294 25986;25987 39248;39249;39250 39250 3 LGNGINIIVATPGR GLIMGGSNRSAEAQKLGNGINIIVATPGRL KLGNGINIIVATPGRLLDHMQNTPGFMYKN K L G G R L 1 1 2 0 0 0 0 3 0 3 1 0 0 0 1 0 1 0 0 1 0 0 14 0 1393.8041 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254 Q4ZG72 174 187 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 8.0204E-23 149.49 4 2 0.95306 1.2905 13.196 6 Median 1.0082 1.3711 7.0333 4 0 Median 0.67851 1.0681 0.24672 2 0 Median 185430000 97646000 87785000 121230000 59291000 61942000 64198000 38355000 25843000 7137 242 7295 25988;25989;25990;25991;25992;25993 39251;39252;39253;39254;39255;39256;39257;39258;39259;39260;39261;39262 39255 12 LGNIEFKPESR HEAESVLAVVAAVLKLGNIEFKPESRVNGL AVLKLGNIEFKPESRVNGLDESKIKDKNEL K L G S R V 0 1 1 0 0 0 2 1 0 1 1 1 0 1 1 1 0 0 0 0 0 0 11 1 1288.6776 E9PDF6;B0I1S9;O43795;E7EQD9;Q05CR5 E9PDF6 281 291 MYO1B Unconventional myosin-Ib yes no 3 0.011002 51.286 3 1.1996 1.5765 18.474 3 Median 1.1996 1.5765 18.474 3 0 Median NaN NaN NaN 0 0 Median 31581000 14323000 17258000 31581000 14323000 17258000 0 0 0 7138 665 7296 25994;25995;25996 39263;39264;39265 39265 3 LGNLFLNEDLEVK CQYLHRNRVIHRDLKLGNLFLNEDLEVKIG LKLGNLFLNEDLEVKIGDFGLATKVEYDGE K L G V K I 0 0 2 1 0 0 2 1 0 0 4 1 0 1 0 0 0 0 0 1 0 0 13 0 1502.7981 B2R841;P53350;B4E083;Q59GD0;Q58A51 B2R841 179 191 PLK1;Plk-1 delta Serine/threonine-protein kinase PLK;Serine/threonine-protein kinase PLK1 yes no 2 8.9023E-05 85.813 2 0.59797 0.73917 NaN 1 Median 0.59797 0.73917 NaN 1 0 Median NaN NaN NaN 0 0 Median 51265000 23550000 27715000 51265000 23550000 27715000 0 0 0 7139 714 7297 25997;25998 39266;39267;39268 39268 3 LGNNCVFAPADVTSEK LLDLPNSGGEAQAKKLGNNCVFAPADVTSE GNNCVFAPADVTSEKDVQTALALAKGKFGR K L G E K D 2 0 2 1 1 0 1 1 0 0 1 1 0 1 1 1 1 0 0 2 0 0 16 0 1720.809 A0A0S2Z410;Q99714;Q5H928;A0A0S2Z434 A0A0S2Z410 54 69 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2 6.3282E-10 128.68 4 0.44505 0.57503 27.867 4 Median 0.44505 0.57503 27.867 4 0 Median NaN NaN NaN 0 0 Median 23919000 16887000 7031900 23919000 16887000 7031900 0 0 0 7140 458 7298 25999;26000;26001;26002 39269;39270;39271;39272;39273;39274;39275 39270 7 LGNPIVPLNIR VPRDLPSWMKFLHGKLGNPIVPLNIRLFLA LHGKLGNPIVPLNIRLFLAKLVINTEEVFR K L G I R L 0 1 2 0 0 0 0 1 0 2 2 0 0 0 2 0 0 0 0 1 0 0 11 0 1204.7292 P78527 P78527 2133 2143 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 9.3171E-06 124.08 4 1 0.44281 0.619 4.3807 5 Median 0.44845 0.60626 4.3486 4 0 Median 0.43091 0.63019 NaN 1 0 Median 134810000 95366000 39442000 126670000 89933000 36739000 8135600 5433200 2702400 7141 1427 7299 26003;26004;26005;26006;26007 39276;39277;39278;39279;39280;39281;39282;39283 39281 7 LGNSLLR RRQSMAFSILNTPKKLGNSLLRRGASKKAL SILNTPKKLGNSLLRRGASKKALSKASPNT K L G L R R 0 1 1 0 0 0 0 1 0 0 3 0 0 0 0 1 0 0 0 0 0 0 7 0 771.46029 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q9UNL7;Q4LE64;Q14980 Q4LE64 2045 2051 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.010686 81.381 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7142 148;1499 7300 26008 39284 39284 1 LGPASAADTGSEAKPGALAEGAAEPEPQR DCVERNERLELEAYRLGPASAADTGSEAKP PGALAEGAAEPEPQRHAGRIAFTDADDVAI R L G Q R H 8 1 0 1 0 1 4 4 0 0 2 1 0 0 4 2 1 0 0 0 0 0 29 1 2747.3362 Q9NYB0 Q9NYB0 101 129 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes yes 3 5.2097E-12 70.718 4 1 0.88829 1.3416 NaN 1 Median NaN NaN NaN 0 0 Median 0.88829 1.3416 NaN 1 0 Median 15811000 6863000 8947900 8619400 2958700 5660700 7191500 3904300 3287200 7143 1769 7301 26009;26010;26011;26012;26013 39285;39286;39287;39288;39289 39287 5 LGPGKPGLK WNSFLPPPPPMPGPRLGPGKPGLKFNGPPP PMPGPRLGPGKPGLKFNGPPPPPPPPPPHL R L G L K F 0 0 0 0 0 0 0 3 0 0 2 2 0 0 2 0 0 0 0 0 0 0 9 1 865.53854 I2E4T3;I2E4S7;A0A076L8Z0;B4DP61;E7EQZ4;Q16637 I2E4T3 55 63 SMN1;SMN2 Survival motor neuron protein yes no 2 0.0020835 91.626 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5158600 5158600 0 5158600 5158600 0 0 0 0 7144 329 7302 26014 39290 39290 1 LGPGRPLPTFPTSECTSDVEPDTR GEFEIQAEDDARARKLGPGRPLPTFPTSEC FPTSECTSDVEPDTREMVRAQNKKKKKSGG K L G T R E 0 2 0 2 1 0 2 2 0 0 2 0 0 1 5 2 4 0 0 1 0 0 24 1 2628.249 Q8TDD1;H0YHZ9 Q8TDD1 59 82 DDX54 ATP-dependent RNA helicase DDX54 yes no 3 1.6515E-22 126.55 4 2 0.79381 1.0852 11.148 6 Median 0.83845 1.1315 6.0813 4 0 Median 0.63166 0.93487 6.6752 2 0 Median 145480000 83858000 61622000 118680000 69321000 49362000 26796000 14536000 12259000 7145 1658 7303 26015;26016;26017;26018;26019;26020 39291;39292;39293;39294;39295;39296;39297;39298;39299;39300;39301;39302;39303 39295 13 LGPLLDILADSR LFPLLLRLLDPTSSRLGPLLDILADSRHLW SSRLGPLLDILADSRHLWSPFGLRSLAASS R L G S R H 1 1 0 2 0 0 0 1 0 1 4 0 0 0 1 1 0 0 0 0 0 0 12 0 1281.7293 A8K9K4;Q58F09;Q13724 A8K9K4 434 445 GCS1;MOGS Mannosyl-oligosaccharide glucosidase yes no 2 0.0014593 62.466 1 1.1559 1.524 NaN 1 Median NaN NaN NaN 0 0 Median 1.1559 1.524 NaN 1 0 Median 4414100 1956500 2457700 0 0 0 4414100 1956500 2457700 7146 646 7304 26021 39304;39305 39305 2 LGPQASSQVVMPPLVR IPPPLVRGGQQASSKLGPQASSQVVMPPLV GPQASSQVVMPPLVRGAQQIHSIRQHSSTG K L G V R G 1 1 0 0 0 2 0 1 0 0 2 0 1 0 3 2 0 0 0 3 0 0 16 0 1677.9236 A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7 A0A024R7K7 234 249 GATAD2A Transcriptional repressor p66-alpha yes no 2 0.0017356 40.373 1 1.6421 2.3865 NaN 1 Median NaN NaN NaN 0 0 Median 1.6421 2.3865 NaN 1 0 Median 12331000 4780200 7550600 0 0 0 12331000 4780200 7550600 7147 179 7305 26022 39306 39306 80 1 LGPQNFIDETSDIENLLKEEEDYKEENNDSK RKKLSKPSQVSSGQKLGPQNFIDETSDIEN LKEEEDYKEENNDSKETSGALKWKEDLSRK K L G S K E 0 0 4 4 0 1 7 1 0 2 3 3 0 1 1 2 1 0 1 0 0 0 31 2 3654.6697 Q14692 Q14692 629 659 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 4 7.0997E-13 94.087 4 1.0663 1.2361 9.1411 4 Median 1.0663 1.2361 9.1411 4 0 Median NaN NaN NaN 0 0 Median 87577000 41927000 45650000 87577000 41927000 45650000 0 0 0 7148 1495 7306 26023;26024;26025;26026 39307;39308;39309;39310;39311;39312;39313 39309 7 LGPSTNSMSGGVQTPR MPLPAEIPPVFPSGKLGPSTNSMSGGVQTP GPSTNSMSGGVQTPREDWAPKPHAFVGSVK K L G P R E 0 1 1 0 0 1 0 3 0 0 1 0 1 0 2 3 2 0 0 1 0 0 16 0 1587.7675 B3KVI8;Q76L82;Q8IXJ9 B3KVI8 1259 1274 ASXH1;ASXL1 Putative Polycomb group protein ASXL1 yes no 2 0.023871 53.211 1 0.81169 1.1323 NaN 1 Median 0.81169 1.1323 NaN 1 0 Median NaN NaN NaN 0 0 Median 4452200 2340600 2111600 4452200 2340600 2111600 0 0 0 7149 782 7307 26027 39314 39314 283 1 LGPSVVGLAR RGYVGSIQPHGVFFRLGPSVVGLARYSHVS GVFFRLGPSVVGLARYSHVSQHSPSKKALY R L G A R Y 1 1 0 0 0 0 0 2 0 0 2 0 0 0 1 1 0 0 0 2 0 0 10 0 967.58147 Q14690 Q14690 1343 1352 PDCD11 Protein RRP5 homolog yes yes 2 2.1124E-05 90.709 2 1 1.0123 1.3709 NaN 1 Median 1.0123 1.3709 NaN 1 0 Median NaN NaN NaN 0 0 Median 16141000 8340500 7800500 16141000 8340500 7800500 0 0 0 7150 1494 7308 26028;26029;26030 39315;39316;39317 39317 3 LGQAELVVIDEAAAIPLPLVK HRQTIQYIHPADAVKLGQAELVVIDEAAAI VVIDEAAAIPLPLVKSLLGPYLVFMASTIN K L G V K S 4 0 0 1 0 1 2 1 0 2 4 1 0 0 2 0 0 0 0 3 0 0 21 0 2158.2613 Q05CW7;Q9H0A0;A0A087WV29 Q9H0A0 379 399 NAT10 N-acetyltransferase 10 no no 2 2.379E-25 141 3 0.70038 0.893 64.206 3 Median 0.70038 0.893 64.206 3 0 Median NaN NaN NaN 0 0 Median 274000000 148610000 125390000 274000000 148610000 125390000 0 0 0 7151 1730;1443 7309 26031;26032;26033 39318;39319;39320;39321;39322 39318 4 LGQALTEVYAK DSISETVILRGEPEKLGQALTEVYAKANSF EPEKLGQALTEVYAKANSFTVSSVAAPSWL K L G A K A 2 0 0 0 0 1 1 1 0 0 2 1 0 0 0 0 1 0 1 1 0 0 11 0 1191.6499 B2R5V9;A0A024R4E5;Q00341;B4DKR8;Q5HYC5;H7C0A4 B2R5V9 350 360 HDLBP;DKFZp686L08115 Vigilin yes no 2 0.0073028 52.579 1 1.014 1.3062 NaN 1 Median 1.014 1.3062 NaN 1 0 Median NaN NaN NaN 0 0 Median 4900900 2346700 2554300 4900900 2346700 2554300 0 0 0 7152 122 7310 26034 39323;39324 39323 2 LGQASLGVIK EMCCEAVKKLFKQDKLGQASLGVIKVISGF FKQDKLGQASLGVIKVISGFVKGRNYEVRP K L G I K V 1 0 0 0 0 1 0 2 0 1 2 1 0 0 0 1 0 0 0 1 0 0 10 0 984.59678 A8K905;Q8WTT2;B4DXL4 A8K905 394 403 NOC3L Nucleolar complex protein 3 homolog yes no 2 0.00096005 80.219 3 0.8388 1.0666 6.5601 3 Median 0.8388 1.0666 6.5601 3 0 Median NaN NaN NaN 0 0 Median 28403000 15125000 13277000 28403000 15125000 13277000 0 0 0 7153 643 7311 26035;26036;26037 39325;39326;39327;39328;39329 39329 5 LGQGVLVQVSPSLVK DGAVSLHTRSLKYGKLGQGVLVQVSPSLVK LGQGVLVQVSPSLVKRQKTHFHDLPCGASV K L G V K R 0 0 0 0 0 2 0 2 0 0 3 1 0 0 1 2 0 0 0 4 0 0 15 0 1522.9083 Q13868;B3KQW2 Q13868 166 180 EXOSC2 Exosome complex component RRP4 yes no 2 3.4311E-10 145.81 3 2 0.65557 0.82752 21.188 5 Median 0.66198 0.85511 7.4392 3 0 Median 0.41116 0.62434 17.248 2 0 Median 62790000 40274000 22516000 26791000 15409000 11382000 35999000 24865000 11134000 7154 1478 7312 26038;26039;26040;26041;26042 39330;39331;39332;39333;39334;39335;39336;39337;39338 39332 9 LGQSVTTIPTVGFNVETVTYK GLDAAGKTTILYKLKLGQSVTTIPTVGFNV TIPTVGFNVETVTYKNVKFNVWDVGGQDKI K L G Y K N 0 0 1 0 0 1 1 2 0 1 1 1 0 1 1 1 5 0 1 4 0 0 21 0 2253.1893 Q6FH17;Q5U025;P62330 Q6FH17 35 55 ARF6 ADP-ribosylation factor 6 yes no 2 1.2223E-18 128.95 2 0.39132 0.50525 25.747 2 Median 0.39132 0.50525 25.747 2 0 Median NaN NaN NaN 0 0 Median 8623100 6212700 2410300 8623100 6212700 2410300 0 0 0 7155 1410 7313 26043;26044 39339;39340 39339 2 LGQVASSLFR NPDDGVRGSPPEDYRLGQVASSLFRGEHHS PEDYRLGQVASSLFRGEHHSRGGTGRLASL R L G F R G 1 1 0 0 0 1 0 1 0 0 2 0 0 1 0 2 0 0 0 1 0 0 10 0 1076.5978 P42696;A2A2V2;Q5TCT4;H7C5M1 P42696 35 44 RBM34 RNA-binding protein 34 yes no 2 0.00075704 96.034 1 2 1.2155 1.6248 21.759 3 Plateau 1.2155 1.6248 NaN 1 0 Median 0.75315 1.1229 6.0956 2 0 Median 55767000 26782000 28985000 24975000 9703900 15271000 30792000 17078000 13714000 7156 1339 7314 26045;26046;26047 39341;39342;39343;39344 39342 4 LGSESQYSPTPLLK IDAVFHGAVWPQISRLGSESQYSPTPLLKL RLGSESQYSPTPLLKLISIWSRNARYFPLL R L G L K L 0 0 0 0 0 1 1 1 0 0 3 1 0 0 2 3 1 0 1 0 0 0 14 0 1518.793 O75691 O75691 1191 1204 UTP20 Small subunit processome component 20 homolog yes yes 2 4.2132E-50 229 3 2 0.98674 1.3504 9.6419 5 Median 1.003 1.2587 12.772 3 0 Median 0.92876 1.4017 5.2752 2 0 Median 69538000 33656000 35882000 36260000 16538000 19722000 33278000 17118000 16160000 7157 1207 7315 26048;26049;26050;26051;26052 39345;39346;39347;39348;39349;39350;39351;39352 39347 8 LGSLVDEFK AVDLTLPKVEAMNKRLGSLVDEFKELVYPP EAMNKRLGSLVDEFKELVYPPDYNPEGKVT R L G F K E 0 0 0 1 0 0 1 1 0 0 2 1 0 1 0 1 0 0 0 1 0 0 9 0 1006.5335 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356;Q6IC76 A0A024R1N4 518 526 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 2 0.0040585 101.54 2 1 0.58015 0.78854 3.1812 3 Median 0.59533 0.77032 4.0738 2 0 Median 0.52364 0.78854 NaN 1 0 Median 34924000 24017000 10907000 17662000 11830000 5832400 17262000 12187000 5074900 7158 62 7316 26053;26054;26055 39353;39354;39355 39354 3 LGSPDYGNSALLSLPGYRPTTR QASLRATSSTQSLARLGSPDYGNSALLSLP NSALLSLPGYRPTTRSSARRSQAGVSSGAP R L G T R S 1 2 1 1 0 0 0 3 0 0 4 0 0 0 3 3 2 0 2 0 0 0 22 1 2334.1968 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q9UNL7;Q4LE64;Q14980 Q4LE64 1846 1867 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 2.2207E-06 67.449 4 2 0.43904 0.60752 13.298 6 Median 0.48259 0.65684 9.5191 4 0 Median 0.36086 0.54399 11.788 2 0 Median 124560000 82191000 42367000 84779000 53882000 30897000 39779000 28308000 11470000 7159 148;1499 7317 26056;26057;26058;26059;26060;26061 39356;39357;39358;39359;39360;39361;39362;39363;39364;39365;39366 39361 11 LGSTDLCYIAAVK ASALKRMSVLASYEKLGSTDLCYIAAVKGA EKLGSTDLCYIAAVKGAPETLHSMFSQCPP K L G V K G 2 0 0 1 1 0 0 1 0 1 2 1 0 0 0 1 1 0 1 1 0 0 13 0 1409.7225 A0A024R7N2;Q9HD20;A0A024R7P3;Q8NC73 A0A024R7N2 642 654 ATP13A1 Manganese-transporting ATPase 13A1 yes no 2 0.023761 34.532 2 0.76969 1.0157 2.5841 2 Median 0.76969 1.0157 2.5841 2 0 Median NaN NaN NaN 0 0 Median 462380000 266710000 195670000 462380000 266710000 195670000 0 0 0 7160 181 7318 26062;26063 39367;39368;39369;39370;39371 39367 5 LGSTVFVANLDYK PNIPNEIIHALQAGRLGSTVFVANLDYKVG GRLGSTVFVANLDYKVGWKKLKEVFSMAGV R L G Y K V 1 0 1 1 0 0 0 1 0 0 2 1 0 1 0 1 1 0 1 2 0 0 13 0 1425.7504 P52272;A0A087X0X3;Q59ES8;Q7KYM9;M0R019;B4DEG4;M0R2T0;M0QYQ7 P52272 202 214 HNRNPM;ORF Heterogeneous nuclear ribonucleoprotein M yes no 2 1.8788E-10 113.69 3 2 0.34551 0.45056 114.21 5 Median 0.33045 0.42462 4.2496 3 0 Median 2.1972 3.4548 3.4975 2 0 Median 255600000 163760000 91839000 194650000 143860000 50792000 60943000 19897000 41046000 7161 1363 7319 26064;26065;26066;26067;26068 39372;39373;39374;39375;39376;39377;39378;39379;39380 39375 9 LGSVEAPK KRLSSRARKRAAKRRLGSVEAPKTNKSPEA KRAAKRRLGSVEAPKTNKSPEAKPLPGKLP R L G P K T 1 0 0 0 0 0 1 1 0 0 1 1 0 0 1 1 0 0 0 1 0 0 8 0 799.44397 P46087;F5H5X6;F5GWB7;F5H709;F5H359 P46087 56 63 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2 0.005579 104.37 3 1 0.84119 1.0605 20.824 4 Median 0.85187 1.0788 12.184 3 0 Median 0.51302 0.78857 NaN 1 0 Median 149790000 82802000 66992000 127800000 67957000 59841000 21997000 14845000 7151100 7162 1343 7320 26069;26070;26071;26072 39381;39382;39383;39384;39385;39386 39384 6 LGTDEISPR DNYPQSVPRLFISTRLGTDEISPRVLQALG LFISTRLGTDEISPRVLQALGSEPIQYAVP R L G P R V 0 1 0 1 0 0 1 1 0 1 1 0 0 0 1 1 1 0 0 0 0 0 9 0 986.50327 F5H6E2;B7Z3E5;O00159;D3DTH7 F5H6E2 877 885 MYO1C Unconventional myosin-Ic yes no 2 7.2523E-05 113.26 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12029000 12029000 0 12029000 12029000 0 0 0 0 7163 905 7321 26073 39387 39387 1 LGTEPTSETQDELQR PEMEDLPSKGVQEERLGTEPTSETQDELQR LGTEPTSETQDELQRLLGLLRDQDPLSEEQ R L G Q R L 0 1 0 1 0 2 3 1 0 0 2 0 0 0 1 1 3 0 0 0 0 0 15 0 1702.801 B4DLM8;O15381;B4DQJ4 B4DLM8 516 530 NVL Nuclear valosin-containing protein-like yes no 2 2.1388E-56 237.49 3 1 1.2405 1.5765 NaN 1 Median NaN NaN NaN 0 0 Median 1.2405 1.5765 NaN 1 0 Median 7792300 4776500 3015800 3231500 3231500 0 4560800 1545000 3015800 7164 827 7322 26074;26075;26076;26077 39388;39389;39390;39391;39392 39389 5 LGTLEQEATADVEWR TEVGPRFELKLYMIRLGTLEQEATADVEWR LGTLEQEATADVEWRWHPYTNTARKRVFLS R L G W R W 2 1 0 1 0 1 3 1 0 0 2 0 0 0 0 0 2 1 0 1 0 0 15 0 1716.8319 H0Y714;Q96G21;E7ENR5 H0Y714 249 263 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 2 0.0034824 41.48 1 0.59036 0.81535 NaN 1 Median NaN NaN NaN 0 0 Median 0.59036 0.81535 NaN 1 0 Median 9809500 7376500 2433000 0 0 0 9809500 7376500 2433000 7165 1094 7323 26078 39393 39393 1 LGTLSPAFSTR FYIDYGNREVLPSTRLGTLSPAFSTRVLPA PSTRLGTLSPAFSTRVLPAQATEYAFAFIQ R L G T R V 1 1 0 0 0 0 0 1 0 0 2 0 0 1 1 2 2 0 0 0 0 0 11 0 1148.619 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B4E299;B3KU67 A0A140VK49 777 787 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.010994 106.88 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7977900 7977900 0 7977900 7977900 0 0 0 0 7166 508 7324 26079 39394 39394 1 LGTNQENQQPNQQPPGK HTVLKLQGQVSAKKRLGTNQENQQPNQQPP TNQENQQPNQQPPGKKPFLRNLLPRTPTCQ R L G G K K 0 0 3 0 0 5 1 2 0 0 1 1 0 0 3 0 1 0 0 0 0 0 17 0 1876.9028 O95235 O95235 830 846 KIF20A Kinesin-like protein KIF20A yes yes 2 1.9592E-99 270.93 4 2 0.80073 1.0155 28.743 6 Median 0.85099 1.2852 12.755 4 0 Linear 0.43303 0.66273 2.3349 2 0 Median 90141000 56152000 33990000 43093000 23090000 20003000 47048000 33062000 13986000 7167 1215 7325 26080;26081;26082;26083;26084;26085 39395;39396;39397;39398;39399;39400;39401;39402;39403;39404;39405 39398 11 LGTYVFDVLQGVVAPEVR L G V R 1 1 0 1 0 1 1 2 0 0 2 0 0 1 1 0 1 0 1 5 0 0 18 0 1961.0622 REV__Q0D2K2 yes yes 3 0.013284 24.041 2 0.8429 1.1417 7.113 2 Median 0.8429 1.1417 7.113 2 0 Median NaN NaN NaN 0 0 Median 105490000 58047000 47445000 105490000 58047000 47445000 0 0 0 + 7168 1855 7326 26086;26087 39406;39407 39406 2 LGVCFDVPTASVTEIQEK EIDSKVKGMVFLKGKLGVCFDVPTASVTEI CFDVPTASVTEIQEKWHDSRRWQLSVATEQ K L G E K W 1 0 0 1 1 1 2 1 0 1 1 1 0 1 1 1 2 0 0 3 0 0 18 0 1991.9874 Q9NR30;Q8NI92 Q9NR30 679 696 DDX21;OK/SW-cl.65 Nucleolar RNA helicase 2 yes no 2 1.5617E-50 198.37 4 1 0.72313 0.90705 31.463 5 Median 0.73667 0.92906 6.8585 4 0 Median 0.28371 0.45853 NaN 1 0 Median 237790000 144560000 93233000 194740000 111090000 83649000 43053000 33470000 9583500 7169 1756 7327 26088;26089;26090;26091;26092 39408;39409;39410;39411;39412;39413;39414;39415;39416 39410 9 LGVLSSSQNGPPK SAATQVQNLTLRSQKLGVLSSSQNGPPKST QKLGVLSSSQNGPPKSTSQTQSLTICHNKT K L G P K S 0 0 1 0 0 1 0 2 0 0 2 1 0 0 2 3 0 0 0 1 0 0 13 0 1282.6881 A5YM43;Q8NDX5;E7EX82;B4E2T1;C9J6H0;C9JYH7;B4DYD1 A5YM43 223 235 PHC3 Polyhomeotic-like protein 3 yes no 2 0.025181 33.866 1 0.70233 0.885 NaN 1 Median 0.70233 0.885 NaN 1 0 Median NaN NaN NaN 0 0 Median 2438000 1403900 1034100 2438000 1403900 1034100 0 0 0 7170 561 7328 26093 39417 39417 1 LGVLTSR DEMNIRLWKANASEKLGVLTSREKAAKDYN WKANASEKLGVLTSREKAAKDYNQKLKEKF K L G S R E 0 1 0 0 0 0 0 1 0 0 2 0 0 0 0 1 1 0 0 1 0 0 7 0 744.44939 A0A087WT20;Q9NV06 A0A087WT20 512 518 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2 0.003913 148.07 4 0.91939 1.2302 6.6693 2 Median 0.91939 1.2302 6.6693 2 0 Median NaN NaN NaN 0 0 Median 37882000 22660000 15222000 37882000 22660000 15222000 0 0 0 7171 331 7329 26094;26095;26096;26097 39418;39419;39420;39421;39422;39423 39418 6 LGVTNTIISHYDGR ANAERLKSVVGNLHRLGVTNTIISHYDGRQ RLGVTNTIISHYDGRQFPKVVGGFDRVLLD R L G G R Q 0 1 1 1 0 0 0 2 1 2 1 0 0 0 0 1 2 0 1 1 0 0 14 0 1544.7947 P46087 P46087 432 445 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 3 3.0141E-10 140.33 4 2 0.67845 0.93779 3.5543 6 Median 0.69395 0.95627 3.4433 4 0 Median 0.56077 0.91045 1.5641 2 0 Median 674490000 407720000 266770000 543330000 320400000 222930000 131160000 87319000 43845000 7172 1343 7330 26098;26099;26100;26101;26102;26103 39424;39425;39426;39427;39428;39429;39430;39431;39432;39433 39428 10 LGYAGNTEPQFIIPSCIAIK RLPACVVDCGTGYTKLGYAGNTEPQFIIPS NTEPQFIIPSCIAIKESAKVGDQAQRRVMK K L G I K E 2 0 1 0 1 1 1 2 0 4 1 1 0 1 2 1 1 0 1 0 0 0 20 0 2191.1347 A0A024RAI1;P61158 A0A024RAI1 19 38 ACTR3 Actin-related protein 3 yes no 2 2.9182E-05 95.854 3 2.4387 3.1342 7.1817 2 Median 2.4387 3.1342 7.1817 2 0 Median NaN NaN NaN 0 0 Median 30390000 7120500 23269000 30390000 7120500 23269000 0 0 0 7173 243 7331 26104;26105;26106 39434;39435;39436;39437 39435 4 LGYDPQAK DVISLEQGKKEQIERLGYDPQAKAPFQPKP KKEQIERLGYDPQAKAPFQPKPKQKGRSST R L G A K A 1 0 0 1 0 1 0 1 0 0 1 1 0 0 1 0 0 0 1 0 0 0 8 0 890.44978 B0UZZ8;B4DNI0;O15213;B4DP15;A8K9A1;A8K806 B0UZZ8 540 547 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2 0.00071346 91.626 3 0.99219 1.2607 2.7546 2 Median 0.99219 1.2607 2.7546 2 0 Median NaN NaN NaN 0 0 Median 35854000 13243000 22611000 35854000 13243000 22611000 0 0 0 7174 668 7332 26107;26108;26109 39438;39439;39440 39439 3 LGYIHR AATCFPEPFINEGKRLGYIHRNFAGNRFSD EPFINEGKRLGYIHRNFAGNRFSDHVALLS R L G H R N 0 1 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 6 0 757.42351 Q08211;B3KU66 Q08211 900 905 DHX9 ATP-dependent RNA helicase A yes no 2 0.019667 130.16 3 1 0.68494 0.93452 13.776 4 Median 0.68602 0.93776 0.78014 3 0 Median 0.46124 0.71255 NaN 1 0 Median 133130000 79540000 53586000 113330000 66306000 47021000 19800000 13235000 6565300 7175 1448 7333 26110;26111;26112;26113 39441;39442;39443;39444 39441 4 LHALFTLAQAEDSVFVIVNK YIDGILIKTFIVGCKLHALFTLAQAEDSVF TLAQAEDSVFVIVNKEKPDIFQLVSVKLPK K L H N K E 3 0 1 1 0 1 1 0 1 1 3 1 0 2 0 1 1 0 0 3 0 0 20 0 2214.2049 A8K330;Q8IWA0 A8K330 102 121 WDR75 WD repeat-containing protein 75 yes no 3 7.5298E-36 182.31 3 0.74359 0.94417 NaN 1 Median 0.74359 0.94417 NaN 1 0 Median NaN NaN NaN 0 0 Median 30353000 8260300 22093000 30353000 8260300 22093000 0 0 0 7176 588 7334 26114;26115;26116 39445;39446;39447 39445 3 LHDETLTYLNQGQSYEIR PFQYVLCAATSPAVKLHDETLTYLNQGQSY ETLTYLNQGQSYEIRMLDNRKLGELPEING K L H I R M 0 1 1 1 0 2 2 1 1 1 3 0 0 0 0 1 2 0 2 0 0 0 18 0 2179.0546 A0A024R120;Q12800;F8VX55;C9JWL3;A0A024R2J0;A8KAN5;A0A024R2L0;Q9NZI7 A0A024R120 81 98 TFCP2;UBP1 Alpha-globin transcription factor CP2;Upstream-binding protein 1 yes no 3 0.00063908 38.824 1 0.38068 0.52699 NaN 1 Median 0.38068 0.52699 NaN 1 0 Median NaN NaN NaN 0 0 Median 11303000 8698000 2604800 11303000 8698000 2604800 0 0 0 7177 48 7335 26117 39448;39449 39449 2 LHDFVSK ETDSVGTPQSNGGMRLHDFVSKTVIKPESC PQSNGGMRLHDFVSKTVIKPESCVPCGKRI R L H S K T 0 0 0 1 0 0 0 0 1 0 1 1 0 1 0 1 0 0 0 1 0 0 7 0 844.4443 B2RE34;A0A024R136;Q9H0H5;F8VRD2;H0YIK5;F8VRL2 B2RE34 286 292 RACGAP1 Rac GTPase-activating protein 1 yes no 2 0.032533 60.972 2 0.86797 1.2425 6.907 2 Median NaN NaN NaN 0 0 Median 0.86797 1.2425 6.907 2 0 Median 11586000 6273200 5313200 0 0 0 11586000 6273200 5313200 7178 49 7336 26118;26119 39450;39451;39452 39450 3 LHDIDGVPHLILIASR GRLINHSKCGNCQTKLHDIDGVPHLILIAS HDIDGVPHLILIASRDIAAGEELLYDYGDR K L H S R D 1 1 0 2 0 0 0 1 2 3 3 0 0 0 1 1 0 0 0 1 0 0 16 0 1767.9996 E3VVS3;A0A0C4DFR3;Q9NQR1 E3VVS3 279 294 SETD8 N-lysine methyltransferase SETD8 yes no 3;4 0.00045783 42.338 2 3 1.1467 1.544 26.1 4 Median 1.1467 1.544 0.98618 2 0 Median 1.3314 1.963 38.289 2 0 Median 50598000 21027000 29571000 18908000 7089000 11819000 31691000 13938000 17752000 7179 419 7337 26120;26121;26122;26123;26124 39453;39454;39455;39456;39457;39458 39456 6 LHEEEIQELQAQIQEQHVQIDVDVSKPDLTAALR RKVESLQEEIAFLKKLHEEEIQELQAQIQE IDVDVSKPDLTAALRDVRQQYESVAAKNLQ K L H L R D 3 1 0 3 0 6 5 0 2 3 4 1 0 0 1 1 1 0 0 3 0 0 34 1 3922.0072 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;B0YJC5;Q5JVS8 V9HWE1 237 270 HEL113;VIM Vimentin yes no 4;5 6.8769E-35 130.53 5 0.78164 1.0404 55.151 4 Median 0.78164 1.0404 55.151 4 0 Median NaN NaN NaN 0 0 Median 95393000 66015000 29377000 95393000 66015000 29377000 0 0 0 7180 1245 7338 26125;26126;26127;26128;26129 39459;39460;39461;39462;39463;39464 39460 5 LHEEIQNLIK SALMIWGSIEKEHDKLHEEIQNLIKIQAIA KEHDKLHEEIQNLIKIQAIAVCMENGNFKE K L H I K I 0 0 1 0 0 1 2 0 1 2 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1235.6874 E7EWM7;A8K914;A0A024R7X2;A0A024R7X1;P54274;E5RFJ5 E7EWM7 64 73 TERF1 Telomeric repeat-binding factor 1 yes no 2 0.038058 68.846 1 0.73067 0.9757 NaN 1 Median 0.73067 0.9757 NaN 1 0 Median NaN NaN NaN 0 0 Median 2718500 1638100 1080500 2718500 1638100 1080500 0 0 0 7181 186 7339 26130 39465 39465 1 LHFFMPGFAPLTSR ADLRKLAVNMVPFPRLHFFMPGFAPLTSRG RLHFFMPGFAPLTSRGSQQYRALTVPELTQ R L H S R G 1 1 0 0 0 0 0 1 1 0 2 0 1 3 2 1 1 0 0 0 0 0 14 0 1619.8283 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;B4DMU8;Q96B85;B4DXZ5;Q1KSF8;I0CMK4;Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;Q96HX0;B4DFH6;Q9BVA1;Q13885;A0A024QZU2;B2R6L0;O43209;B7Z4N1;Q9UGA2;A6NNZ2;Q3ZCM7;A0A075B736;Q5SQY0;P04350;B4DJ43;B4DE77;Q9BUF5;K7ESM5;B3KS31;B4DP54;B4E386 Q5JP53 245 258 TUBB;XTP3TPATP1;TUBB4Q;TUBB2C;TUBB4B;TUBB2B;TUBB2A;DKFZp566F223;TUBB8;TUBB4A;TUBB6 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain no no 2;3 2.9654E-07 106.79 12 5 0.39316 0.52455 122.67 15 Median 0.38613 0.52002 16.859 10 0 Median 3.7162 5.8241 17.8 5 0 Median 318720000 154200000 164520000 164600000 119250000 45349000 154120000 34950000 119170000 7182 1241;1423;1230;1479;1716;1532 7340;7341 26131;26132;26133;26134;26135;26136;26137;26138;26139;26140;26141;26142;26143;26144;26145;26146;26147 39466;39467;39468;39469;39470;39471;39472;39473;39474;39475;39476;39477;39478;39479;39480;39481;39482;39483;39484;39485;39486;39487;39488;39489;39490;39491;39492 39476 474 27 LHFHNLVK CQTGGVIAEILRGVRLHFHNLVKGLTDLSA EILRGVRLHFHNLVKGLTDLSACKAQLGLG R L H V K G 0 0 1 0 0 0 0 0 2 0 2 1 0 1 0 0 0 0 0 1 0 0 8 0 1006.5712 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 127 134 NOP56 Nucleolar protein 56 yes no 2;3 0.0018565 79.451 5 1 0.71558 0.90876 13.611 6 Median 0.72147 0.92147 4.0959 5 0 Median 0.4998 0.66527 NaN 1 0 Median 344370000 200200000 144170000 342020000 198750000 143270000 2350500 1454900 895650 7183 647 7342 26148;26149;26150;26151;26152;26153 39493;39494;39495;39496;39497;39498;39499;39500;39501 39500 9 LHGLPEQFLYGTATK KEWLTNFMEDRRQRRLHGLPEQFLYGTATK LHGLPEQFLYGTATKHLTYNDFINKELILF R L H T K H 1 0 0 0 0 1 1 2 1 0 3 1 0 1 1 0 2 0 1 0 0 0 15 0 1673.8777 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80 Q71UH4 670 684 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2;3 4.7616E-05 83.856 4 2 0.65755 0.86856 8.407 5 Median 0.68151 0.8588 7.1458 3 0 Median 0.61319 0.91735 7.7286 2 0 Median 89101000 52811000 36290000 67660000 39897000 27763000 21442000 12914000 8527500 7184 1437 7343 26154;26155;26156;26157;26158;26159 39502;39503;39504;39505;39506;39507;39508;39509;39510 39504 9 LHGSVGGAQNLSALGALVSLSNAR NRSAPHLPGLMCLLRLHGSVGGAQNLSALG NLSALGALVSLSNARLSSIKTRFEGLCLLS R L H A R L 4 1 2 0 0 1 0 4 1 0 5 0 0 0 0 4 0 0 0 2 0 0 24 0 2291.2346 O15451;A8K548;C9JFV4;B4DR36;Q8IZL8;I3L1P4;I3L4M7;I3L445 O15451 44 67 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes no 3 9.6336E-07 75.177 5 0.53882 0.73843 14.378 3 Median 0.53882 0.73843 14.378 3 0 Median NaN NaN NaN 0 0 Median 19151000 13209000 5942200 19151000 13209000 5942200 0 0 0 7185 613 7344 26160;26161;26162;26163;26164 39511;39512;39513;39514;39515;39516;39517;39518 39513 8 LHGTAQQLLQDSK NMIQMYSNGSSKDRKLHGTAQQLLQDSKTK RKLHGTAQQLLQDSKTKIEVIRMQILQAVQ K L H S K T 1 0 0 1 0 3 0 1 1 0 3 1 0 0 0 1 1 0 0 0 0 0 13 0 1437.7576 Q16513;B1AL79;Q9UHS4 Q16513 172 184 PKN2 Serine/threonine-protein kinase N2 yes no 2 3.2037E-07 129.34 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7186 1519 7345 26165 39519 39519 1 LHHYSDF YFALGNEKGKALMYRLHHYSDF________ KGKALMYRLHHYSDF_______________ R L H D F - 0 0 0 1 0 0 0 0 2 0 1 0 0 1 0 1 0 0 1 0 0 0 7 0 917.40317 Q9Y5J1 Q9Y5J1 550 556 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes yes 2 0.0038477 104.94 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49554000 0 0 38658000 0 0 10896000 0 0 7187 1830 7346 26166;26167 39520;39521 39521 2 LHICDHFTR EGRQQICNQQPPCSRLHICDHFTRGNCRFP QPPCSRLHICDHFTRGNCRFPNCLRSHNLM R L H T R G 0 1 0 1 1 0 0 0 2 1 1 0 0 1 0 0 1 0 0 0 0 0 9 0 1197.5713 Q7Z2W4;A8K9U6;C9J6P4 Q7Z2W4 171 179 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 3 0.0056083 66.962 2 0.73934 0.98528 NaN 1 Median 0.73934 0.98528 NaN 1 0 Median NaN NaN NaN 0 0 Median 22385000 13142000 9242600 22385000 13142000 9242600 0 0 0 7188 1613 7347 26168;26169 39522;39523 39523 2 LHIFNAK GFCHVGEEENEARGKLHIFNAKKAAAHYKC EENEARGKLHIFNAKKAAAHYKCMLFSSGT K L H A K K 1 0 1 0 0 0 0 0 1 1 1 1 0 1 0 0 0 0 0 0 0 0 7 0 841.48102 Q8IWS0;A0A0D9SGE8;Q5JRC6 Q8IWS0 228 234 PHF6 PHD finger protein 6 yes no 2 0.022812 77.72 3 2 0.9793 1.2242 22.655 5 Median 1.0339 1.2888 4.3368 3 0 Median 0.5656 0.85214 4.0067 2 0 Median 137370000 74843000 62527000 102540000 52483000 50058000 34830000 22360000 12470000 7189 1625 7348 26170;26171;26172;26173;26174 39524;39525;39526;39527;39528;39529;39530 39528 7 LHILASGADVTSANAK KSLDLDSCTLSEILRLHILASGADVTSANA HILASGADVTSANAKYRYQKRGGFDATDDA R L H A K Y 4 0 1 1 0 0 0 1 1 1 2 1 0 0 0 2 1 0 0 1 0 0 16 0 1566.8366 D3DS96;Q9NRL2;Q59G54;A0A087WWN7 D3DS96 554 569 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 3 7.9558E-05 53.981 2 0.46189 0.58563 2.2225 2 Median 0.46189 0.58563 2.2225 2 0 Median NaN NaN NaN 0 0 Median 19481000 13254000 6226800 19481000 13254000 6226800 0 0 0 7190 979 7349 26175;26176 39531;39532 39531 2 LHISPSNMTNQNTPEYMEK LPYNDYFEYFGPDFKLHISPSNMTNQNTPE PSNMTNQNTPEYMEKIKQRLFENLRMLPHA K L H E K I 0 0 3 0 0 1 2 0 1 1 1 1 2 0 2 2 2 0 1 0 0 0 19 0 2233.0144 Q92769;B3KUJ5;Q59GB9 Q92769 344 362 HDAC2 Histone deacetylase 2;Histone deacetylase yes no 3 0.0025921 49.872 2 0.80745 1.2181 2.3734 2 Median NaN NaN NaN 0 0 Median 0.80745 1.2181 2.3734 2 0 Median 31540000 17734000 13807000 0 0 0 31540000 17734000 13807000 7191 1675 7350 26177;26178 39533;39534;39535 39533 753;754 3 LHLAIPTR ETKMKGNKVNEVLNRLHLAIPTRRDDKERP VNEVLNRLHLAIPTRRDDKERPPFIPEGVV R L H T R R 1 1 0 0 0 0 0 0 1 1 2 0 0 0 1 0 1 0 0 0 0 0 8 0 919.56034 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;B4DHR2 Q53GS0 360 367 GTPBP4 Nucleolar GTP-binding protein 1 yes no 3 0.019443 90.777 3 2 0.62688 0.81308 9.2724 2 Median NaN NaN NaN 0 0 Median 0.62688 0.81308 9.2724 2 0 Median 12801000 3662400 9138700 6388200 0 6388200 6412900 3662400 2750500 7192 975 7351 26179;26180;26181;26182;26183 39536;39537;39538;39539;39540 39539 5 LHLAIPTRR ETKMKGNKVNEVLNRLHLAIPTRRDDKERP NEVLNRLHLAIPTRRDDKERPPFIPEGVVA R L H R R D 1 2 0 0 0 0 0 0 1 1 2 0 0 0 1 0 1 0 0 0 0 0 9 1 1075.6614 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;B4DHR2 Q53GS0 360 368 GTPBP4 Nucleolar GTP-binding protein 1 yes no 3 0.00052326 112.41 4 2 0.64449 0.86705 7.3583 5 Median 0.69615 0.95586 5.7747 3 0 Median 0.55088 0.83106 2.6975 2 0 Median 159690000 84395000 75295000 118940000 58049000 60890000 40751000 26346000 14405000 7193 975 7352 26184;26185;26186;26187;26188;26189 39541;39542;39543;39544;39545;39546;39547;39548;39549;39550;39551 39541 11 LHLGFIEIR LHDNDRRLADHFGGKLHLGFIEIREKLEEL DHFGGKLHLGFIEIREKLEELKRVVAEKQE K L H I R E 0 1 0 0 0 0 1 1 1 2 2 0 0 1 0 0 0 0 0 0 0 0 9 0 1096.6393 A0A0A6YYJ8;Q9Y383;B3KRR1;B3KSL5 A0A0A6YYJ8 280 288 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes no 2 0.0072685 60.436 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7194 409 7353 26190 39552 39552 1 LHLGHTFSLSK GKYFVTFPYPYMNGRLHLGHTFSLSKCEFA MNGRLHLGHTFSLSKCEFAVGYQRLKGKCC R L H S K C 0 0 0 0 0 0 0 1 2 0 3 1 0 1 0 2 1 0 0 0 0 0 11 0 1238.6772 B4E266;B4DER1;B2RCM2;Q9P2J5;Q6NVI4;Q0VGM8;Q9P0T1;A0A087WXY1 B4E266 59 69 LARS Leucine--tRNA ligase, cytoplasmic yes no 3 0.0005818 104.82 3 0.52266 0.64689 13.682 2 Median 0.52266 0.64689 13.682 2 0 Median NaN NaN NaN 0 0 Median 31119000 21376000 9743200 31119000 21376000 9743200 0 0 0 7195 732 7354 26191;26192;26193 39553;39554;39555 39553 3 LHLSGIDANPNALFPPVEFPAPR DHRDNLEFFLAGIGRLHLSGIDANPNALFP NPNALFPPVEFPAPRGTPLISPLIKWDHSL R L H P R G 3 1 2 1 0 0 1 1 1 1 3 0 0 2 5 1 0 0 0 1 0 0 23 0 2471.2961 A0A0U1RQF0;P49327 A0A0U1RQF0 803 825 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 2.1113E-12 123.61 4 0.76148 1.0143 7.9348 3 Plateau 0.76148 1.0143 7.9348 3 0 Plateau NaN NaN NaN 0 0 Median 54910000 36547000 18363000 54910000 36547000 18363000 0 0 0 7196 486 7355 26194;26195;26196;26197 39556;39557;39558;39559;39560;39561;39562 39559 7 LHLVDLAGSER EQRKKSDKNSSFRSKLHLVDLAGSERQKKT FRSKLHLVDLAGSERQKKTKAEGDRLKEGI K L H E R Q 1 1 0 1 0 0 1 1 1 0 3 0 0 0 0 1 0 0 0 1 0 0 11 0 1208.6513 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3;Q5JRK0;Q8IWH8;Q05CT3;D3DQ90;H0Y718;J3KPF9;Q2UVF2;A0A087X011;E9PES4;B4DHG8;B7ZKX5;Q9Y496;Q6ZMV9 Q59HG1 239 249 KIF4A;KIF4B;KIF6;KIF3A Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B;Kinesin-like protein KIF3A;Kinesin-like protein KIF6 no no 2;3 0.00015329 99.013 5 3 0.74737 1.0438 6.971 8 Median 0.78566 1.0529 9.2159 5 0 Median 0.67104 1.0429 0.1896 3 0 Median 151190000 89059000 62129000 69230000 38638000 30592000 81958000 50421000 31537000 7197 1216 7356 26198;26199;26200;26201;26202;26203;26204;26205 39563;39564;39565;39566;39567;39568;39569;39570;39571;39572;39573;39574;39575;39576 39574 14 LHNAIEGGTQLSR KSQQSAGKEYVGIVRLHNAIEGGTQLSRAL VRLHNAIEGGTQLSRALETLTGALFQRPPL R L H S R A 1 1 1 0 0 1 1 2 1 1 2 0 0 0 0 1 1 0 0 0 0 0 13 0 1394.7266 O60832;C9IYT0;U5UA77;H7C0M1;H7BZF2 O60832 159 171 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2;3 2.8433E-10 126.67 6 4 0.65212 0.87646 10.096 10 Median 0.66826 0.90944 6.7582 6 0 Median 0.54355 0.80703 8.1675 4 0 Median 220730000 131820000 88915000 152750000 88002000 64749000 67979000 43814000 24166000 7198 1193 7357 26206;26207;26208;26209;26210;26211;26212;26213;26214;26215 39577;39578;39579;39580;39581;39582;39583;39584;39585;39586;39587;39588;39589;39590;39591;39592;39593;39594;39595;39596;39597 39585 21 LHNELQSGSLR SRPSGRSDLTVDAVKLHNELQSGSLRLGKS DAVKLHNELQSGSLRLGKSEAPETPMEEEA K L H L R L 0 1 1 0 0 1 1 1 1 0 3 0 0 0 0 2 0 0 0 0 0 0 11 0 1252.6524 B3KMR5;Q5JTH9;A0A087X1U8 B3KMR5 58 68 RRP12 RRP12-like protein yes no 2;3 0.0011533 101.38 4 4 0.9236 1.2342 9.2488 5 Median 0.92448 1.2342 9.9763 3 0 Median 0.89193 1.2642 8.4668 2 0 Median 120740000 61003000 59733000 87051000 49214000 37837000 33684000 11788000 21896000 7199 756 7358 26216;26217;26218;26219;26220;26221;26222;26223 39598;39599;39600;39601;39602;39603;39604;39605;39606 39599 9 LHNQQALSSSIEEGLR EYEAHQDRVLIRLSRLHNQQALSSSIEEGL HNQQALSSSIEEGLRMQAMHRAQRVRRPIP R L H L R M 1 1 1 0 0 2 2 1 1 1 3 0 0 0 0 3 0 0 0 0 0 0 16 0 1780.9068 Q06587;B4DVB5;A0A024RCR9;B4DW57 Q06587 131 146 RING1 E3 ubiquitin-protein ligase RING1 yes no 3 0.0020205 23.226 1 0.67486 0.99901 NaN 1 Median NaN NaN NaN 0 0 Median 0.67486 0.99901 NaN 1 0 Median 7739900 4059500 3680400 0 0 0 7739900 4059500 3680400 7200 1446 7359 26224 39607;39608 39607 2 LHNSIIPDVLEEDEDDPESEPEGQDIDELYHFVK RMKKFNQLMKKVMEKLHNSIIPDVLEEDED EPEGQDIDELYHFVKQTHQQETQSIQVDVQ K L H V K Q 0 0 1 6 0 1 7 1 2 3 3 1 0 1 3 2 0 0 1 2 0 0 34 0 3964.8014 A0A0D9SFM0;Q149N8;H7C2W2;K4DI94 A0A0D9SFM0 248 281 SHPRH E3 ubiquitin-protein ligase SHPRH yes no 4 2.3925E-05 53.665 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1824400 862910 961470 1824400 862910 961470 0 0 0 7201 436 7360 26225 39609 39609 1 LHNTIVEINNHK AVAEKAGKVEAEVKRLHNTIVEINNHKLKA VKRLHNTIVEINNHKLKAQQDKLDKINKQL R L H H K L 0 0 3 0 0 0 1 0 2 2 1 1 0 0 0 0 1 0 0 1 0 0 12 0 1430.763 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 887 898 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 2.577E-12 127.52 2 2 0.59504 0.80952 1.8443 4 Median 0.63788 0.80453 1.651 2 0 Median 0.54537 0.81771 2.2002 2 0 Median 43737000 28314000 15424000 22195000 14440000 7754400 21543000 13874000 7669100 7202 1760 7361 26226;26227;26228;26229 39610;39611;39612;39613;39614;39615 39610 6 LHPCPPPDFFRPCR LLRPRGKDERLVTVRLHPCPPPDFFRPCRL RLHPCPPPDFFRPCRLLPTKNNVRSAWYRG R L H C R L 0 2 0 1 2 0 0 0 1 0 1 0 0 2 5 0 0 0 0 0 0 0 14 1 1794.8446 Q9H6R4;A0A0A0MRW6;B4DF80 Q9H6R4 253 266 NOL6 Nucleolar protein 6 yes no 3 0.00090052 93.839 2 1.1263 1.5236 NaN 1 Median 1.1263 1.5236 NaN 1 0 Median NaN NaN NaN 0 0 Median 26680000 14014000 12667000 26680000 14014000 12667000 0 0 0 7203 1738 7362 26230;26231 39616;39617 39617 2 LHPFHVIR MVKSCGKDGFHIRVRLHPFHVIRINKMLSC GFHIRVRLHPFHVIRINKMLSCAGADRLQT R L H I R I 0 1 0 0 0 0 0 0 2 1 1 0 0 1 1 0 0 0 0 1 0 0 8 0 1017.5872 F8W7C6;A0A087WV22;H7C123;H7C2C5;H7C2U2;P27635;X1WI28;X5D2T3;B8A6G2;X5D2W5;A6QRI9;Q96L21 P27635 91 98 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like no no 3 0.0038645 85.265 8 2 0.75259 1.0267 9.0086 9 Median 0.7541 1.0428 8.1788 7 0 Median 0.56991 0.92823 2.6286 2 0 Median 1379800000 770240000 609570000 1224700000 674550000 550150000 155100000 95686000 59419000 7204 1301;1071 7363 26232;26233;26234;26235;26236;26237;26238;26239;26240;26241 39618;39619;39620;39621;39622;39623;39624;39625;39626;39627;39628;39629;39630;39631;39632;39633;39634 39631 17 LHPGELADTPK SELELMTYINENWDRLHPGELADTPKSERY NWDRLHPGELADTPKSERYEHVLEALNDYK R L H P K S 1 0 0 1 0 0 1 1 1 0 2 1 0 0 2 0 1 0 0 0 0 0 11 0 1176.6139 B4DZG1;Q9Y483;Q96G26;B4DZ69 B4DZG1 201 211 MTF2 Metal-response element-binding transcription factor 2 yes no 2 0.038156 79.489 2 1 0.78377 1.1544 NaN 1 Median NaN NaN NaN 0 0 Median 0.78377 1.1544 NaN 1 0 Median 11167000 7928600 3238800 3504500 3504500 0 7662900 4424100 3238800 7205 878 7364 26242;26243;26244 39635;39636;39637 39637 3 LHPVILASIVDSYER GPALPGPFPGGRVVRLHPVILASIVDSYER LHPVILASIVDSYERRNEGAARVIGTLLGT R L H E R R 1 1 0 1 0 0 1 0 1 2 2 0 0 0 1 2 0 0 1 2 0 0 15 0 1710.9305 B4DMT5;B3KSH1;O00303;E9PQV8 B4DMT5 44 58 EIF3F Eukaryotic translation initiation factor 3 subunit F yes no 3 1.1176E-07 90.229 2 1 0.21428 0.28981 60.757 2 Median 0.21428 0.28981 60.757 2 0 Median NaN NaN NaN 0 0 Median 32117000 18043000 14073000 23872000 18043000 5828600 8244900 0 8244900 7206 775 7365 26245;26246;26247 39638;39639;39640;39641 39640 4 LHQEDQACATCLILACSTAACDR SNVGGDGEEIERFFKLHQEDQACATCLILA ATCLILACSTAACDREVSAWATRAFFRYGG K L H D R E 5 1 0 2 4 2 1 0 1 1 3 0 0 0 0 1 2 0 0 0 0 0 23 0 2663.156 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 503 525 NUP155 Nuclear pore complex protein Nup155 yes no 3 0.002011 38.237 2 0.69828 0.99119 NaN 1 Median 0.69828 0.99119 NaN 1 0 Median NaN NaN NaN 0 0 Median 8563700 7522900 1040800 8563700 7522900 1040800 0 0 0 7207 29 7366 26248;26249 39642;39643 39643 2 LHQVVETSHEDLPASQER EEQLLKQKMDELHKKLHQVVETSHEDLPAS VVETSHEDLPASQERSEVNPARMGPSVGSQ K L H E R S 1 1 0 1 0 2 3 0 2 0 2 0 0 0 1 2 1 0 0 2 0 0 18 0 2074.0079 B4DYG2;O43683;A0JLU2;A8K5A6 B4DYG2 280 297 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 yes no 3 0.0012294 86.411 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2703500 2703500 0 2703500 2703500 0 0 0 0 7208 873 7367 26250 39644 39644 1 LHRTELATQEK DAQRFRKQAEEIGEKLHRTELATQEKVTLV IGEKLHRTELATQEKVTLVQTLEIQRQQSD K L H E K V 1 1 0 0 0 1 2 0 1 0 2 1 0 0 0 0 2 0 0 0 0 0 11 1 1324.7099 Q15149 Q15149 2554 2564 PLEC Plectin yes yes 3 0.040777 51.727 1 0.85843 1.0868 NaN 1 Median 0.85843 1.0868 NaN 1 0 Median NaN NaN NaN 0 0 Median 1128600 567780 560830 1128600 567780 560830 0 0 0 7209 1507 7368 26251 39645 39645 1 LHSEPILQDLSR DVSVMNQVCREQFVRLHSEPILQDLSRFLV FVRLHSEPILQDLSRFLVKRFCSEPQKILE R L H S R F 0 1 0 1 0 1 1 0 1 1 3 0 0 0 1 2 0 0 0 0 0 0 12 0 1406.7518 B4DZE5;O00411;Q59E91;Q4G0F4;K7ESD1 B4DZE5 871 882 POLRMT DNA-directed RNA polymerase, mitochondrial;DNA-directed RNA polymerase yes no 3 0.0060485 34.768 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3447600 3447600 0 3447600 3447600 0 0 0 0 7210 876 7369 26252 39646 39646 1 LHSIILANPQDNENFIATVR GETPTVDTIDSYMNRLHSIILANPQDNENF LANPQDNENFIATVREVVNRLDR_______ R L H V R E 2 1 3 1 0 1 1 0 1 3 2 0 0 1 1 1 1 0 0 1 0 0 20 0 2264.1913 B4DMG1;Q9NP66;H0YKL0 B4DMG1 207 226 HMG20A High mobility group protein 20A yes no 3 4.2058E-10 111.82 4 2 0.82515 1.1037 34.767 6 Median 0.7739 1.034 7.8355 4 0 Median 1.2587 1.9616 18.743 2 0 Median 120700000 62821000 57876000 70578000 40034000 30544000 50119000 22787000 27332000 7211 832 7370 26253;26254;26255;26256;26257;26258 39647;39648;39649;39650;39651;39652;39653;39654;39655;39656;39657 39653 11 LHTLEEEK KREKINELLKYIEERLHTLEEEKEELAQYQ LKYIEERLHTLEEEKEELAQYQKWDKMRRA R L H E K E 0 0 0 0 0 0 3 0 1 0 2 1 0 0 0 0 1 0 0 0 0 0 8 0 997.50803 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 200 207 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.00093773 117.72 1 0.91914 1.2678 NaN 1 Median NaN NaN NaN 0 0 Median 0.91914 1.2678 NaN 1 0 Median 5334600 2808700 2525800 0 0 0 5334600 2808700 2525800 7212 663 7371 26259 39658 39658 1 LHTNFHIPK EEHLEEMMKMMSPNKLHTNFHIPKKGPPAK MMSPNKLHTNFHIPKKGPPAKKPGKHSDKP K L H P K K 0 0 1 0 0 0 0 0 2 1 1 1 0 1 1 0 1 0 0 0 0 0 9 0 1105.6033 Q9UIG0 Q9UIG0 378 386 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2;3 0.0024734 104.01 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60732000 0 60732000 60732000 0 60732000 0 0 0 7213 1786 7372 26260;26261;26262 39659;39660;39661 39659 3 LHVAILER PPGYHPLDVEKEWGKLHVAILEREKQLRSE VEKEWGKLHVAILEREKQLRSEFERLECLQ K L H E R E 1 1 0 0 0 0 1 0 1 1 2 0 0 0 0 0 0 0 0 1 0 0 8 0 949.5709 Q15149;E9PMV1 Q15149 510 517 PLEC Plectin yes no 2 0.033444 77.923 1 0.91948 1.2459 NaN 1 Median 0.91948 1.2459 NaN 1 0 Median NaN NaN NaN 0 0 Median 9479200 5025900 4453300 9479200 5025900 4453300 0 0 0 7214 1507 7373 26263 39662 39662 1 LHVDPENFR LKGAFASLSELHCDKLHVDPENFRLLGNVL ELHCDKLHVDPENFRLLGNVLVVVLARRFG K L H F R L 0 1 1 1 0 0 1 0 1 0 1 0 0 1 1 0 0 0 0 1 0 0 9 0 1125.5567 CON__Q3SX09;Q4TZM4;Q9BWU5;Q8IZI0;Q8IUL9;Q6V0K9;Q6J1Z7;Q670S4;Q52MT0;Q4F786;Q3LR79;Q0Z944;E9NGZ5;D1MGQ0;B3VL05;B2M1S8;Q9BWV6;Q9GZL9;Q9UK54;B3VL86;E9PFT6;D9YZU5;C8C504;A0N071;Q14473;P68871;P02042;Q5XTR9;Q3Y9I8;Q4TWB7;Q4JLR8;B2M1S6;A1YZ08;A0A1B4WRL5 CON__Q3SX09 151 159 HBB;HBD;HBD/HBB Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin;Hemoglobin subunit delta yes no 3 4.8109E-05 119.21 4 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54147000 54147000 0 50139000 50139000 0 4008400 4008400 0 + 7215 969 7374 26264;26265;26266;26267;26268 39663;39664;39665;39666;39667;39668 39663 6 LHVEVAK LALKLLDEDEIRGYKLHVEVAKFQLKGEYD EDEIRGYKLHVEVAKFQLKGEYDASKKKKK K L H A K F 1 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 2 0 0 7 0 794.46504 O43719;B4DRS4;Q5H919;Q5H918 O43719 211 217 HTATSF1 HIV Tat-specific factor 1 yes no 2 0.012793 100.74 3 0.50672 0.64213 35.945 2 Median 0.50672 0.64213 35.945 2 0 Median NaN NaN NaN 0 0 Median 22171000 14134000 8037200 22171000 14134000 8037200 0 0 0 7216 1187 7375 26269;26270;26271 39669;39670;39671 39671 3 LHVIPR KDCSIIKWSVESGRKLHVIPRAKKGAEGKP KWSVESGRKLHVIPRAKKGAEGKPPGHSSH K L H P R A 0 1 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 1 0 0 6 0 733.45989 O43818 O43818 181 186 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 0.026663 120.78 2 2 0.68625 0.99417 19.655 4 Median 0.87997 1.1764 2.5995 2 0 Median 0.53965 0.83878 2.8353 2 0 Median 97956000 56364000 41592000 50337000 25698000 24639000 47619000 30666000 16953000 7217 1188 7376 26272;26273;26274;26275 39672;39673;39674;39675 39672 4 LHVLLFK QRLEANHGLLVARGKLHVLLFKEEGEVPAS GLLVARGKLHVLLFKEEGEVPASAFQKAPE K L H F K E 0 0 0 0 0 0 0 0 1 0 3 1 0 1 0 0 0 0 0 1 0 0 7 0 868.55346 Q969G5;E9PIE3 Q969G5 122 128 PRKCDBP Protein kinase C delta-binding protein yes no 2 0.011314 99.511 3 0.98951 1.247 NaN 1 Median 0.98951 1.247 NaN 1 0 Median NaN NaN NaN 0 0 Median 2563900 1443200 1120700 2563900 1443200 1120700 0 0 0 7218 1678 7377 26276;26277;26278 39676;39677;39678 39678 3 LHVTALDYLAPYAK LGTCFGKFTKTHKFRLHVTALDYLAPYAKY RLHVTALDYLAPYAKYKVWIKPGAEQSFLY R L H A K Y 3 0 0 1 0 0 0 0 1 0 3 1 0 0 1 0 1 0 2 1 0 0 14 0 1573.8504 Q9Y221;B3KM49;J3QLW7;J3QRD6;J3QRR4 Q9Y221 81 94 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog yes no 2;3 6.2687E-87 261.87 7 4 0.55767 0.80897 10.569 11 Median 0.68884 0.86004 12.024 7 0 Median 0.49044 0.74802 5.596 4 0 Median 402780000 247640000 155130000 295900000 176270000 119630000 106880000 71377000 35500000 7219 1800 7378 26279;26280;26281;26282;26283;26284;26285;26286;26287;26288;26289 39679;39680;39681;39682;39683;39684;39685;39686;39687;39688;39689;39690;39691;39692;39693;39694;39695;39696;39697;39698;39699;39700;39701;39702 39683 24 LHYAFQTEGK ERDILVEVNHPFIVKLHYAFQTEGKLYLIL PFIVKLHYAFQTEGKLYLILDFLRGGDLFT K L H G K L 1 0 0 0 0 1 1 1 1 0 1 1 0 1 0 0 1 0 1 0 0 0 10 0 1192.5877 B1AXG2;B1AXG1;B4DKZ2;B4DG22;B7ZB17;P51812;Q9UK32;D6RHW7;E9PMM7;D6R910;D6RA62;D6RE03;E9PAN7;B7Z2K7;B7Z3B5;E9PGT3;F2Z2J1;Q15349;Q15418 B1AXG2 105 114 RPS6KA3;RPS6KA6;RPS6KA2;RPS6KA1 Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6;Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-2;Ribosomal protein S6 kinase alpha-1 yes no 2 0.0071705 56.729 1 0.41596 0.52537 NaN 1 Median 0.41596 0.52537 NaN 1 0 Median NaN NaN NaN 0 0 Median 8439900 5005500 3434400 8439900 5005500 3434400 0 0 0 7220 678 7379 26290 39703;39704 39703 2 LHYCVSCAIHSK ASVFDAYVLPKLYVKLHYCVSCAIHSKVVR YVKLHYCVSCAIHSKVVRNRSREARKDRTP K L H S K V 1 0 0 0 2 0 0 0 2 1 1 1 0 0 0 2 0 0 1 1 0 0 12 0 1473.6857 A0A024RB14;P62854;Q5JNZ5;Q76N56 A0A024RB14 71 82 RPS26;RPS26P11 40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1 yes no 2;3;4 5.3355E-92 275.48 10 4 0.90324 1.1826 43.129 11 Median 0.97544 1.2949 12.014 9 0 Median 0.28812 0.45118 0.75192 2 0 Median 4159800000 2140100000 2019800000 4092300000 2086300000 2006000000 67575000 53758000 13817000 7221 255 7380 26291;26292;26293;26294;26295;26296;26297;26298;26299;26300;26301;26302;26303;26304 39705;39706;39707;39708;39709;39710;39711;39712;39713;39714;39715;39716;39717;39718;39719;39720;39721;39722;39723;39724;39725;39726;39727;39728;39729;39730;39731;39732;39733 39705 29 LHYYCEDDGK REQQDAKLCERHREKLHYYCEDDGKLLCVM RHREKLHYYCEDDGKLLCVMCRESREHRPH K L H G K L 0 0 0 2 1 0 1 1 1 0 1 1 0 0 0 0 0 0 2 0 0 0 10 0 1298.5238 A0A024RCP3;Q12899;A2AE48;A2AE50;Q5SPU2 A0A024RCP3 109 118 TRIM26 Tripartite motif-containing protein 26 yes no 2 1.7621E-08 155.58 3 0.67937 0.86044 9.7792 3 Plateau 0.67937 0.86044 9.7792 3 0 Plateau NaN NaN NaN 0 0 Median 17874000 9850500 8023100 17874000 9850500 8023100 0 0 0 7222 299 7381 26305;26306;26307 39734;39735;39736;39737 39734 4 LIAGNKPVSFLTAQQLQQLQQQGQATQVR LGRNIILTTMPAGTKLIAGNKPVSFLTAQQ QLQQLQQQGQATQVRIQTVPASHLQQGTAS K L I V R I 3 1 1 0 0 9 0 2 0 1 4 1 0 1 1 1 2 0 0 2 0 0 29 1 3192.7367 A0A024R3K9;A0A024R3N2;Q6P4R8 A0A024R3K9 1232 1260 NFRKB Nuclear factor related to kappa-B-binding protein yes no 3 3.2461E-16 108.22 4 0.97149 1.3033 30.521 3 Median 0.97149 1.3033 30.521 3 0 Median NaN NaN NaN 0 0 Median 19975000 13137000 6838300 19975000 13137000 6838300 0 0 0 7223 101 7382 26308;26309;26310;26311 39738;39739;39740;39741;39742;39743;39744;39745 39739 8 LIAGYLDR L I D R 1 1 0 1 0 0 0 1 0 1 2 0 0 0 0 0 0 0 1 0 0 0 8 0 919.51272 REV__A0A059V6Y7 yes no 2 0.027891 52.683 1 0.55952 0.88954 NaN 1 Median NaN NaN NaN 0 0 Median 0.55952 0.88954 NaN 1 0 Median 48727000 31351000 17376000 0 0 0 48727000 31351000 17376000 + 7224 1837 7383 26312 39746 39746 1 LIAHAGSLLNLAK APNVTVMVGELVGARLIAHAGSLLNLAKHA ARLIAHAGSLLNLAKHAASTVQILGAEKAL R L I A K H 3 0 1 0 0 0 0 1 1 1 4 1 0 0 0 1 0 0 0 0 0 0 13 0 1319.7925 Q9Y2X3;B3KN82 Q9Y2X3 298 310 NOP58 Nucleolar protein 58 yes no 2;3 8.3771E-13 155.86 10 5 0.65253 0.8679 11.415 13 Median 0.73506 1.0036 8.664 9 0 Linear 0.49303 0.75087 6.8742 4 0 Median 695280000 401620000 293650000 448170000 244310000 203850000 247110000 157310000 89802000 7225 1810 7384 26313;26314;26315;26316;26317;26318;26319;26320;26321;26322;26323;26324;26325;26326;26327 39747;39748;39749;39750;39751;39752;39753;39754;39755;39756;39757;39758;39759;39760;39761;39762;39763;39764;39765;39766;39767;39768;39769;39770;39771;39772 39753 26 LIAHAGSLTNLAK APSLSALIGEAVGARLIAHAGSLTNLAKYP ARLIAHAGSLTNLAKYPASTVQILGAEKAL R L I A K Y 3 0 1 0 0 0 0 1 1 1 3 1 0 0 0 1 1 0 0 0 0 0 13 0 1307.7561 A8K9K6;O00567;A0PJ92;H0YDU4;H0Y653 A8K9K6 308 320 NOP56 Nucleolar protein 56 yes no 2;3 2.0356E-06 99.343 6 5 0.70131 0.8957 7.9499 8 Median 0.71991 0.90865 5.5628 6 0 Median 0.5044 0.80583 3.1795 2 0 Median 432280000 252950000 179330000 324240000 179950000 144290000 108040000 73003000 35041000 7226 647 7385 26328;26329;26330;26331;26332;26333;26334;26335;26336;26337;26338 39773;39774;39775;39776;39777;39778;39779;39780;39781;39782;39783;39784;39785;39786;39787;39788 39779 16 LIALLEVLSQK KRIANLQTDLSDGLRLIALLEVLSQKKMHR DGLRLIALLEVLSQKKMHRKHNQRPTFRQM R L I Q K K 1 0 0 0 0 1 1 0 0 1 4 1 0 0 0 1 0 0 0 1 0 0 11 0 1225.7646 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98;O75369;A0A024R321;Q14315 P21333 77 87 FLNA;FLNB;FLNC Filamin-A;Filamin-B;Filamin-C no no 2 2.9278E-09 160.82 4 0.81041 1.0135 1.6936 4 Median 0.81041 1.0135 1.6936 4 0 Median NaN NaN NaN 0 0 Median 54584000 29300000 25284000 54584000 29300000 25284000 0 0 0 7227 1287;1199;1486 7386 26339;26340;26341;26342 39789;39790;39791;39792;39793;39794;39795;39796;39797 39790 9 LIALLEVLSQKK KRIANLQTDLSDGLRLIALLEVLSQKKMHR GLRLIALLEVLSQKKMHRKHNQRPTFRQMQ R L I K K M 1 0 0 0 0 1 1 0 0 1 4 2 0 0 0 1 0 0 0 1 0 0 12 1 1353.8595 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98 P21333 77 88 FLNA Filamin-A yes no 3 0.00010764 117.09 5 0.91167 1.1358 8.9284 4 Median 0.91167 1.1358 8.9284 4 0 Median NaN NaN NaN 0 0 Median 45353000 25875000 19479000 45353000 25875000 19479000 0 0 0 7228 1287 7387 26343;26344;26345;26346;26347 39798;39799;39800;39801;39802;39803;39804;39805;39806 39798 9 LIANNTTVER NRELSQKTPPSMRLKLIANNTTVERRFSSW SMRLKLIANNTTVERRFSSWIGGSILASLG K L I E R R 1 1 2 0 0 0 1 0 0 1 1 0 0 0 0 0 2 0 0 1 0 0 10 0 1129.6091 Q6FI97;Q53FS0;O96019;D3DNS0 Q6FI97 380 389 BAF53A;ACTL6A Actin-like protein 6A yes no 2 6.3092E-05 96.034 1 2 1.0655 1.4985 38.199 2 Median 0.84887 1.1438 NaN 1 0 Median 1.3373 1.9632 NaN 1 0 Median 27378000 10426000 16952000 13698000 6927700 6770800 13680000 3498100 10182000 7229 1227 7388 26348;26349;26350 39807;39808;39809 39807 3 LIASVAGSVER TGFMRGHGTYMGEEKLIASVAGSVERVNKL GEEKLIASVAGSVERVNKLICVKALKTRYI K L I E R V 2 1 0 0 0 0 1 1 0 1 1 0 0 0 0 2 0 0 0 2 0 0 11 0 1100.619 Q13868;A3KFL5;A3KFL2;B4E001;A3KFL1 Q13868 52 62 EXOSC2 Exosome complex component RRP4 yes no 2 1.5072E-06 116.3 3 2 0.61473 0.82623 18.723 4 Median 0.6198 0.83006 8.0831 3 0 Median 0.43082 0.60975 NaN 1 0 Median 45777000 29927000 15850000 33550000 19994000 13557000 12227000 9933000 2293500 7230 1478 7389 26351;26352;26353;26354;26355 39810;39811;39812;39813;39814;39815 39813 5 LIASYCNVGDIEGASK MEEANIQPNRVTYQRLIASYCNVGDIEGAS IASYCNVGDIEGASKILGFMKTKDLPVTEA R L I S K I 2 0 1 1 1 0 1 2 0 2 1 1 0 0 0 2 0 0 1 1 0 0 16 0 1695.8138 E5KNY5;P42704;B4DSR0;B8ZZ38;A0A0C4DG06;C9JCA9 E5KNY5 203 218 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 3.6263E-18 115.57 6 0.36211 0.46019 NaN 1 Median 0.36211 0.46019 NaN 1 0 Median NaN NaN NaN 0 0 Median 28764000 25945000 2818500 28764000 25945000 2818500 0 0 0 7231 1001 7390 26356;26357;26358;26359;26360;26361 39816;39817;39818;39819;39820;39821;39822 39821 7 LICCDILDVLDK KMIREYRQMVETELKLICCDILDVLDKHLI ELKLICCDILDVLDKHLIPAANTGESKVFY K L I D K H 0 0 0 3 2 0 0 0 0 2 3 1 0 0 0 0 0 0 0 1 0 0 12 0 1475.7364 V9HW98;G9K389;G9K388;P62258;B7ZA86;K7EIT4;B4DJB0 V9HW98 95 106 HEL2;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion;YWHAE 14-3-3 protein epsilon yes no 2 5.7097E-11 122.69 5 0.48336 0.61567 12.035 3 Median 0.48336 0.61567 12.035 3 0 Median NaN NaN NaN 0 0 Median 23775000 17274000 6500700 23775000 17274000 6500700 0 0 0 7232 1085 7391 26362;26363;26364;26365;26366 39823;39824;39825;39826;39827;39828 39826 5 LIDFLECGK DLERGVEICIATPGRLIDFLECGKTNLRRT IATPGRLIDFLECGKTNLRRTTYLVLDEAD R L I G K T 0 0 0 1 1 0 1 1 0 1 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1093.5478 B4DN41;J3KTA4;B5BUE6;P17844;B4DNG2;Q7Z2V5;Q59E92;J3KRZ1;J3QSF1 B4DN41 217 225 DDX5;DKFZp686J01190 Probable ATP-dependent RNA helicase DDX5 yes no 2 0.0026861 81.548 4 0.35771 0.45569 1.3461 2 Median 0.35771 0.45569 1.3461 2 0 Median NaN NaN NaN 0 0 Median 35508000 29744000 5764400 35508000 29744000 5764400 0 0 0 7233 833 7392 26367;26368;26369;26370 39829;39830;39831;39832;39833 39833 5 LIDFLESGK DLERGVEICIATPGRLIDFLESGKTNLRRC IATPGRLIDFLESGKTNLRRCTYLVLDEAD R L I G K T 0 0 0 1 0 0 1 1 0 1 2 1 0 1 0 1 0 0 0 0 0 0 9 0 1020.5492 Q59F66;Q92841;B4DZQ7 Q59F66 307 315 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 0.0035646 78.516 2 2 1.0467 1.4028 61.521 4 Median 0.66722 0.85024 7.2038 2 0 Median 1.737 2.4374 14.529 2 0 Median 24151000 12098000 12053000 13959000 7984200 5974900 10192000 4114100 6077800 7234 1554 7393 26371;26372;26373;26374 39834;39835;39836;39837 39835 4 LIDGIVLTK FNRALADHSMAQTPRLIDGIVLTKFDTIDD MAQTPRLIDGIVLTKFDTIDDKVGAAISMT R L I T K F 0 0 0 1 0 0 0 1 0 2 2 1 0 0 0 0 1 0 0 1 0 0 9 0 970.60628 A0A024R3M0;P08240;Q6IAX9 A0A024R3M0 357 365 SRPR Signal recognition particle receptor subunit alpha yes no 2 0.007161 77.318 2 0.45074 0.57389 3.4755 2 Median 0.45074 0.57389 3.4755 2 0 Median NaN NaN NaN 0 0 Median 17808000 12156000 5651700 17808000 12156000 5651700 0 0 0 7235 102 7394 26375;26376 39838;39839;39840 39840 3 LIDHLENTK ALAKKPHIIIATPGRLIDHLENTKGFNLRA IATPGRLIDHLENTKGFNLRALKYLVMDEA R L I T K G 0 0 1 1 0 0 1 0 1 1 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1081.5768 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;A4UCU0;F5H1N9 Q53GJ1 146 154 hCG_27698;DDX47;E4-DBP Probable ATP-dependent RNA helicase DDX47 yes no 2;3 5.837E-05 128.86 6 1 0.91797 1.1476 21.926 7 Median 0.92096 1.148 12.625 6 0 Median 0.46914 0.67008 NaN 1 0 Median 133200000 72393000 60811000 126910000 68397000 58510000 6297800 3996200 2301500 7236 249 7395 26377;26378;26379;26380;26381;26382;26383 39841;39842;39843;39844;39845;39846;39847;39848;39849;39850 39847 10 LIDIFYPGDQQSVTFGTK VEGLFDSPPGSDDAKLIDIFYPGDQQSVTF IFYPGDQQSVTFGTKSRVGMGGMEAKVKAA K L I T K S 0 0 0 2 0 2 0 2 0 2 1 1 0 2 1 1 2 0 1 1 0 0 18 0 2028.0204 P54886 P54886 283 300 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 2.4711E-10 120.29 3 1 1.5474 1.9774 23.707 4 Median 1.5196 1.9274 7.7394 3 0 Median 1.9688 2.994 NaN 1 0 Median 47668000 18052000 29616000 35553000 13725000 21828000 12116000 4327100 7788700 7237 1375 7396 26384;26385;26386;26387 39851;39852;39853;39854;39855;39856;39857 39852 7 LIDIGNSCR GLQEREVKCVEDVLKLIDIGNSCRTSGQTS VEDVLKLIDIGNSCRTSGQTSANAHSSRSH K L I C R T 0 1 1 1 1 0 0 1 0 2 1 0 0 0 0 1 0 0 0 0 0 0 9 0 1046.5179 B0AZS5;H0Y8H2;O00139;B4DM85 B0AZS5 367 375 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A no no 2 0.022526 78.77 1 0.87719 1.2232 NaN 1 Median 0.87719 1.2232 NaN 1 0 Median NaN NaN NaN 0 0 Median 4349000 2235600 2113400 4349000 2235600 2113400 0 0 0 7238 664;1163 7397 26388 39858 39858 1 LIDLCQPTQK MESIKRLYPGSVYGRLIDLCQPTQKKYQIA SVYGRLIDLCQPTQKKYQIAVTKVLGKNMD R L I Q K K 0 0 0 1 1 2 0 0 0 1 2 1 0 0 1 0 1 0 0 0 0 0 10 0 1214.6329 Q14683;G8JLG1;Q6P2R1;Q6MZR8;A8K7A6;B7Z709 Q14683 519 528 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.00011074 128.12 3 0.51525 0.64594 5.673 3 Median 0.51525 0.64594 5.673 3 0 Median NaN NaN NaN 0 0 Median 36079000 23327000 12751000 36079000 23327000 12751000 0 0 0 7239 1492 7398 26389;26390;26391 39859;39860;39861;39862;39863;39864 39863 6 LIDLHSPSEIVK GSKTWDRFQMRIHKRLIDLHSPSEIVKQIT HKRLIDLHSPSEIVKQITSISIEPGVEVEV R L I V K Q 0 0 0 1 0 0 1 0 1 2 2 1 0 0 1 2 0 0 0 1 0 0 12 0 1349.7555 P60866;G3XAN0 P60866 88 99 RPS20 40S ribosomal protein S20 yes no 2;3 1.7436E-05 108.47 8 3 0.80095 1.0655 19.731 10 Median 0.79387 1.0349 7.9384 7 0 Median 0.99165 1.5928 16.062 3 0 Plateau 407020000 221470000 185550000 291450000 162820000 128630000 115570000 58659000 56915000 7240 1389 7399 26392;26393;26394;26395;26396;26397;26398;26399;26400;26401;26402 39865;39866;39867;39868;39869;39870;39871;39872;39873;39874;39875;39876;39877;39878;39879;39880;39881;39882 39880 18 LIDVLENR RLRMGCEIVIATPGRLIDVLENRYLVLSRC VIATPGRLIDVLENRYLVLSRCTYVVLDEA R L I N R Y 0 1 1 1 0 0 1 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 8 0 970.54475 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56 B3KY11 509 516 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.0062077 86.794 3 2 0.59133 0.79583 35.183 5 Median 0.49541 0.66559 14.176 3 0 Median 0.8767 1.2602 6.835 2 0 Median 46816000 26871000 19945000 34006000 20169000 13837000 12810000 6701900 6108000 7241 45 7400 26403;26404;26405;26406;26407 39883;39884;39885;39886;39887 39885 5 LIDVNHYAK ANQSRIDALEKAGQKLIDVNHYAKDEVAAR EKAGQKLIDVNHYAKDEVAARMNEVISLWK K L I A K D 1 0 1 1 0 0 0 0 1 1 1 1 0 0 0 0 0 0 1 1 0 0 9 0 1071.5713 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 638 646 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2;3 0.01483 67.169 4 0.87242 1.0945 19.559 4 Median 0.87242 1.0945 19.559 4 0 Median NaN NaN NaN 0 0 Median 42430000 23817000 18613000 42430000 23817000 18613000 0 0 0 7242 1476 7401 26408;26409;26410;26411 39888;39889;39890;39891 39889 4 LIEAGEQLGFDYGER HQDLRFPRIAFFSTRLIEAGEQLGFDYGER LIEAGEQLGFDYGERFWDIKGKLFSCRCGS R L I E R F 1 1 0 1 0 1 3 3 0 1 2 0 0 1 0 0 0 0 1 0 0 0 15 0 1695.8104 A0A1B0GV09;Q9H9B1;Q71M33 A0A1B0GV09 1200 1214 EHMT1;FP13812 Histone-lysine N-methyltransferase EHMT1 yes no 2 0.022084 29.303 1 0.83486 1.1773 NaN 1 Median NaN NaN NaN 0 0 Median 0.83486 1.1773 NaN 1 0 Median 7845300 4973100 2872200 0 0 0 7845300 4973100 2872200 7243 518 7402 26412 39892 39892 1 LIEALEK SCEILDINDEQTLPRLIEALEKRHNLRQMM NDEQTLPRLIEALEKRHNLRQMMIDEFNKQ R L I E K R 1 0 0 0 0 0 2 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 814.48002 H7BYN4;Q02241 H7BYN4 497 503 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 0.02312 85.265 3 1.0264 1.2804 11.191 2 Median 1.0264 1.2804 11.191 2 0 Median NaN NaN NaN 0 0 Median 24016000 12150000 11866000 24016000 12150000 11866000 0 0 0 7244 1117 7403 26413;26414;26415 39893;39894;39895;39896 39896 4 LIEIENFK ______________________________ ______________________________ K L I F K S 0 0 1 0 0 0 2 0 0 2 1 1 0 1 0 0 0 0 0 0 0 0 8 0 1004.5542 Q14683;Q6P2R1;A8K7A6;B7Z709;Q68EN4;Q7Z4C6;V9GYN9 Q14683 6 13 SMC1A Structural maintenance of chromosomes protein 1A yes no 2 0.047389 44.395 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1567800 0 1567800 0 0 0 1567800 0 1567800 7245 1492 7404 26416 39897 39897 1 LIENPLLR LKLYSEMEQLKQKLKLIENPLLRYVFGYQK QLKQKLKLIENPLLRYVFGYQKNSNIQAKG K L I L R Y 0 1 1 0 0 0 1 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 8 0 966.58622 B2RDX0;A8K7Z9;A0A024R6R1;Q8NEM2 B2RDX0 301 308 SHCBP1 SHC SH2 domain-binding protein 1 yes no 2 0.023646 56.122 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5236800 5236800 0 5236800 5236800 0 0 0 0 7246 163 7405 26417 39898 39898 1 LIEQEEYLNVQVK EMRNTLEKFTASIQRLIEQEEYLNVQVKEL QRLIEQEEYLNVQVKELEANVLATAPDKKK R L I V K E 0 0 1 0 0 2 3 0 0 1 2 1 0 0 0 0 0 0 1 2 0 0 13 0 1603.8457 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 828 840 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.6287E-41 223.14 4 3 0.69925 0.95318 6.0043 6 Median 0.71242 0.92442 3.1207 4 0 Median 0.64653 1.0332 0.95538 2 0 Median 438090000 254380000 183710000 307560000 176270000 131300000 130530000 78116000 52410000 7247 1760 7406 26418;26419;26420;26421;26422;26423;26424 39899;39900;39901;39902;39903;39904;39905;39906;39907;39908;39909;39910;39911;39912;39913;39914;39915 39903 17 LIESLFTIQK LKRRNLIIEAVTNLRLIESLFTIQKMIMDQ VTNLRLIESLFTIQKMIMDQEKQEGVSTKC R L I Q K M 0 0 0 0 0 1 1 0 0 2 2 1 0 1 0 1 1 0 0 0 0 0 10 0 1190.6911 Q6AHZ7;Q12789;Q6AWA4;H3BU37 Q6AHZ7 630 639 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.015737 49.06 1 0.99213 1.3918 NaN 1 Median NaN NaN NaN 0 0 Median 0.99213 1.3918 NaN 1 0 Median 4337200 2030900 2306300 0 0 0 4337200 2030900 2306300 7248 1457 7407 26425 39916 39916 1 LIETTANMNSSYVK SALIVPKEMIKKAKKLIETTANMNSSYVKF KLIETTANMNSSYVKFLKQATDNSEISSAT K L I V K F 1 0 2 0 0 0 1 0 0 1 1 1 1 0 0 2 2 0 1 1 0 0 14 0 1569.7709 A4LAA3;P46100;A0A096LNL9;A0A096LNW1;A0A096LNN3 A4LAA3 359 372 ATRX Transcriptional regulator ATRX yes no 2 0.00031365 58.274 1 0.85436 1.2875 NaN 1 Median NaN NaN NaN 0 0 Median 0.85436 1.2875 NaN 1 0 Median 8147400 4126900 4020500 0 0 0 8147400 4126900 4020500 7249 556 7408 26426 39917;39918 39918 194 2 LIEVDDER ______________________________ PATGCQKLIEVDDERKLRTFYEKRMATEVA K L I E R K 0 1 0 2 0 0 2 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 987.48729 Q96DV6;A2A3R6;P62753;A2A3R7 Q96DV6 15 22 RPS6 40S ribosomal protein S6 yes no 1;2 1.835E-06 190.08 7 3 0.91135 1.2482 27.821 6 Median 0.91238 1.2583 1.8867 4 0 Median 0.4415 0.73843 2.7889 2 0 Median 3094100000 1703100000 1391000000 1933400000 918810000 1014500000 1160700000 784270000 376460000 7250 535 7409 26427;26428;26429;26430;26431;26432;26433;26434;26435;26436 39919;39920;39921;39922;39923;39924;39925;39926;39927;39928;39929;39930;39931;39932;39933 39922 15 LIEVDDERK ______________________________ ATGCQKLIEVDDERKLRTFYEKRMATEVAA K L I R K L 0 1 0 2 0 0 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 9 1 1115.5823 Q96DV6;A2A3R6;P62753;A2A3R7 Q96DV6 15 23 RPS6 40S ribosomal protein S6 yes no 1;2;3 8.7728E-09 162.25 17 4 0.83815 1.112 25.334 14 Median 0.90869 1.2033 13.28 10 0 Median 0.42984 0.73183 7.2392 4 0 Median 9091000000 4818300000 4272700000 8373600000 4339400000 4034200000 717420000 478880000 238530000 7251 535 7410 26437;26438;26439;26440;26441;26442;26443;26444;26445;26446;26447;26448;26449;26450;26451;26452;26453;26454;26455;26456;26457 39934;39935;39936;39937;39938;39939;39940;39941;39942;39943;39944;39945;39946;39947;39948;39949;39950;39951;39952;39953;39954;39955;39956;39957;39958;39959;39960;39961;39962;39963;39964;39965;39966;39967 39959 34 LIEVVK GGRHVDYVVDQVVGKLIEVVKKKNKAGVSV YVVDQVVGKLIEVVKKKNKAGVSVKPFQVK K L I V K K 0 0 0 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 2 0 0 6 0 699.45308 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 330 335 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.044212 105.42 1 0.77542 0.98825 NaN 1 Median 0.77542 0.98825 NaN 1 0 Median NaN NaN NaN 0 0 Median 24659000 13651000 11008000 24659000 13651000 11008000 0 0 0 7252 1437 7411 26458 39968 39968 1 LIFSNSK AGNYESPMELCKDVRLIFSNSKAYTPSKRS MELCKDVRLIFSNSKAYTPSKRSRIYSMSL R L I S K A 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 2 0 0 0 0 0 0 7 0 807.44905 Q8WWQ0;Q9NWP3 Q8WWQ0 1387 1393 PHIP PH-interacting protein yes no 2 0.012793 110.34 3 0.87923 1.0941 4.322 3 Median 0.87923 1.0941 4.322 3 0 Median NaN NaN NaN 0 0 Median 116600000 61584000 55018000 116600000 61584000 55018000 0 0 0 7253 1668 7412 26459;26460;26461 39969;39970;39971 39970 3 LIGEYGLR PRRPFEKSRLDQELKLIGEYGLRNKREVWR RLDQELKLIGEYGLRNKREVWRVKFTLAKI K L I L R N 0 1 0 0 0 0 1 2 0 1 2 0 0 0 0 0 0 0 1 0 0 0 8 0 919.51272 A0A024R4M0;P46781;B5MCT8;C9JM19;B7Z732;F2Z3C0;A8MXK4 A0A024R4M0 31 38 RPS9 40S ribosomal protein S9 yes no 2 0.017887 60.76 2 0.55687 0.8963 1.071 2 Median NaN NaN NaN 0 0 Median 0.55687 0.8963 1.071 2 0 Median 96844000 61721000 35122000 0 0 0 96844000 61721000 35122000 7254 124 7413 26462;26463 39972;39973;39974 39972 3 LIGISQR LIPGAEFRCFVKENKLIGISQRDYTQYYDH RCFVKENKLIGISQRDYTQYYDHISKQKEE K L I Q R D 0 1 0 0 0 1 0 1 0 2 1 0 0 0 0 1 0 0 0 0 0 0 7 0 785.47594 O75794;X6RF82;H7BZW7 O75794 187 193 CDC123 Cell division cycle protein 123 homolog yes no 2 0.036176 56.122 2 0.46806 0.62446 NaN 1 Median 0.46806 0.62446 NaN 1 0 Median NaN NaN NaN 0 0 Median 7224200 4891900 2332300 7224200 4891900 2332300 0 0 0 7255 1208 7414 26464;26465 39975;39976 39976 2 LIGLSATLPNYEDVATFLR ARAIRNIEMTQEDVRLIGLSATLPNYEDVA SATLPNYEDVATFLRVDPAKGLFYFDNSFR R L I L R V 2 1 1 1 0 0 1 1 0 1 4 0 0 1 1 1 2 0 1 1 0 0 19 0 2092.1205 O75643;A4FU77;Q9H8B9 O75643 648 666 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 5.3575E-24 182.72 2 0.51897 0.71263 9.2127 2 Median 0.51897 0.71263 9.2127 2 0 Median NaN NaN NaN 0 0 Median 82864000 55216000 27648000 82864000 55216000 27648000 0 0 0 7256 1206 7415 26466;26467 39977;39978;39979;39980 39977 4 LIGNMALLPIR ______________________________ PDTKLIGNMALLPIRSQFKGPAPRETKDTD K L I I R S 1 1 1 0 0 0 0 1 0 2 3 0 1 0 1 0 0 0 0 0 0 0 11 0 1209.7267 Q2LE71;B2R4D5;O15145;B4DM63;F8VR50;C9JZD1 Q2LE71 15 25 ARPC3 Actin-related protein 2/3 complex subunit 3 yes no 2 0.022709 71.692 2 1.1075 1.4367 21.249 2 Median 1.1075 1.4367 21.249 2 0 Median NaN NaN NaN 0 0 Median 2583500 1143700 1439800 2583500 1143700 1439800 0 0 0 7257 683 7416 26468;26469 39981;39982 39982 2 LIGPLSHSILTEAIK GIIISDLTMEMNRFRLIGPLSHSILTEAIK LIGPLSHSILTEAIKAASVHTVGEDTEETP R L I I K A 1 0 0 0 0 0 1 1 1 3 3 1 0 0 1 2 1 0 0 0 0 0 15 0 1590.9345 Q96F88;Q99575 Q96F88 434 448 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 3 0.0036869 65.219 3 1 0.37266 0.50927 15.426 4 Median 0.37307 0.46804 18.481 3 0 Median 0.36829 0.55413 NaN 1 0 Median 56358000 41582000 14776000 35823000 25840000 9983000 20536000 15743000 4793100 7258 1685 7417 26470;26471;26472;26473 39983;39984;39985;39986;39987;39988 39985 6 LIGPNCPGVINPGECK MVRVKHKLLRQEKTRLIGPNCPGVINPGEC IGPNCPGVINPGECKIGIMPGHIHKKGRIG R L I C K I 0 0 2 0 2 0 1 3 0 2 1 1 0 0 3 0 0 0 0 1 0 0 16 0 1723.8386 Q6IAL5;B2R8A1;A8K4W7;P53597;B7Z438 Q6IAL5 154 169 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes no 2 0.00085577 107.39 2 0.32489 0.41554 NaN 1 Median 0.32489 0.41554 NaN 1 0 Median NaN NaN NaN 0 0 Median 7239400 5780400 1459000 7239400 5780400 1459000 0 0 0 7259 610 7418 26474;26475 39989;39990 39989 2 LIGQIVSSITASLR RNLDIERPTYTNLNRLIGQIVSSITASLRF RLIGQIVSSITASLRFDGALNVDLTEFQTN R L I L R F 1 1 0 0 0 1 0 1 0 3 2 0 0 0 0 3 1 0 0 1 0 0 14 0 1456.8613 Q71U36;B4DQK4;Q1ZYQ1;Q13748;Q9UQM3;Q6PEY2;F8VQQ4 Q71U36 230 243 TUBA1A;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain yes no 2 5.1663E-08 139.32 2 0.085251 0.12043 NaN 1 Median 0.085251 0.12043 NaN 1 0 Median NaN NaN NaN 0 0 Median 5316200 4929700 386530 5316200 4929700 386530 0 0 0 7260 1607 7419 26476;26477 39991;39992 39992 2 LIGVANQK EEALENVIKSTKPGKLIGVANQKMIELLAD KSTKPGKLIGVANQKMIELLADNINLGDPS K L I Q K M 1 0 1 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 841.50215 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1 B2RWN5 656 663 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 9.8622E-05 137.44 3 1 0.77739 1.0833 4.1224 3 Plateau 0.81808 1.04 5.7603 2 0 Median 0.68556 1.0286 NaN 1 0 Median 104590000 49242000 55346000 85071000 38041000 47030000 19517000 11201000 8315200 7261 748 7420 26478;26479;26480;26481 39993;39994;39995;39996;39997 39995 5 LIHFSGVALGEACTIVLR GSCKLIEEVMIGEDKLIHFSGVALGEACTI FSGVALGEACTIVLRGATQQILDEAERSLH K L I L R G 2 1 0 0 1 0 1 2 1 2 3 0 0 1 0 1 1 0 0 2 0 0 18 0 1955.0663 V9HW96;P78371;F5GWF6;F8VQ14;B7Z4R3;Q9H369 V9HW96 359 376 HEL-S-100n;CCT2 T-complex protein 1 subunit beta yes no 3 0.014892 56.25 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2224100 2224100 0 2224100 2224100 0 0 0 0 7262 1426 7421 26482 39998 39998 1 LIICNVTGIAHR NMLTKETPETFYIGKLIICNVTGIAHRRPQ IGKLIICNVTGIAHRRPQGESYDQAIRNDE K L I H R R 1 1 1 0 1 0 0 1 1 3 1 0 0 0 0 0 1 0 0 1 0 0 12 0 1365.7551 Q7KZ85 Q7KZ85 1166 1177 SUPT6H Transcription elongation factor SPT6 yes yes 3 0.00069369 55.452 1 0.63734 0.83323 NaN 1 Median 0.63734 0.83323 NaN 1 0 Median NaN NaN NaN 0 0 Median 7781900 4324200 3457700 7781900 4324200 3457700 0 0 0 7263 1609 7422 26483 39999;40000 39999 2 LIIEEDTENENEK GYDRSRRKYWFLNRRLIIEEDTENENEKKI RRLIIEEDTENENEKKIWYYSTKVQLAELI R L I E K K 0 0 2 1 0 0 5 0 0 2 1 1 0 0 0 0 1 0 0 0 0 0 13 0 1574.7312 E7ETD6;Q12830;F5GXF5;A0A0A0MR81;B4DDK2;B4DM40 E7ETD6 338 350 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 3.8645E-34 193.52 2 2 0.99945 1.4484 0.99861 2 Median NaN NaN NaN 0 0 Median 0.99945 1.4484 0.99861 2 0 Median 18730000 10034000 8696100 2686400 2686400 0 16044000 7347400 8696100 7264 1015 7423 26484;26485;26486;26487 40001;40002;40003;40004;40005;40006;40007 40001 7 LILCDECNK NARCKVCRKKGEDDKLILCDECNKAFHLFC KGEDDKLILCDECNKAFHLFCLRPALYEVP K L I N K A 0 0 1 1 2 0 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1163.5315 Q9UIG0 Q9UIG0 1199 1207 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.0049958 113.41 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48866000 0 48866000 44582000 0 44582000 4284000 0 4284000 7265 1786 7424 26488;26489;26490 40008;40009;40010 40008 3 LILEVHQFSR KEMIDKWEDRWEWLRLILEVHQFSRDASVA WEWLRLILEVHQFSRDASVAEAWLLGQEPY R L I S R D 0 1 0 0 0 1 1 0 1 1 2 0 0 1 0 1 0 0 0 1 0 0 10 0 1240.6928 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24 B2ZZ89 2015 2024 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 0.00075904 91.658 3 0.71031 0.94645 8.2828 3 Median 0.71031 0.94645 8.2828 3 0 Median NaN NaN NaN 0 0 Median 42085000 26093000 15992000 42085000 26093000 15992000 0 0 0 7266 346 7425 26491;26492;26493 40011;40012;40013;40014 40014 4 LILFPR SLQANVQRLKEYRSKLILFPRKPSAPKKGD QRLKEYRSKLILFPRKPSAPKKGDSSAEEL K L I P R K 0 1 0 0 0 0 0 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 6 0 757.48505 Q6NZ55;A8K4C8;P26373 Q6NZ55 124 129 RPL13 60S ribosomal protein L13 yes no 2 0.019666 130.51 6 2 0.73108 0.99861 12.052 8 Median 0.74989 1.0314 7.9841 6 0 Median 0.49253 0.81189 0.31783 2 0 Median 1664400000 975430000 688960000 1291800000 731170000 560670000 372550000 244260000 128290000 7267 604 7426 26494;26495;26496;26497;26498;26499;26500;26501 40015;40016;40017;40018;40019;40020;40021;40022;40023;40024 40015 10 LILIESR KHLERNRKDKDAKFRLILIESRIHRLARYY KDKDAKFRLILIESRIHRLARYYKTKRVLP R L I S R I 0 1 0 0 0 0 1 0 0 2 2 0 0 0 0 1 0 0 0 0 0 0 7 0 842.52255 P62277 P62277 115 121 RPS13 40S ribosomal protein S13 yes yes 2 0.0042235 132.96 4 0.87861 1.2155 3.4769 4 Median 0.87861 1.2155 3.4769 4 0 Median NaN NaN NaN 0 0 Median 264130000 145470000 118670000 264130000 145470000 118670000 0 0 0 7268 1403 7427 26502;26503;26504;26505 40025;40026;40027;40028;40029;40030 40025 6 LILLITQVTASEK SRVKTFQKLSHLHGKLILLITQVTASEKTK GKLILLITQVTASEKTKGATSPGQKAKLVY K L I E K T 1 0 0 0 0 1 1 0 0 2 3 1 0 0 0 1 2 0 0 1 0 0 13 0 1427.8599 Q15061;Q8TB67 Q15061 572 584 WDR43 WD repeat-containing protein 43 yes no 2 1.2281E-16 152.69 4 1.0094 1.2895 5.0013 4 Median 1.0094 1.2895 5.0013 4 0 Median NaN NaN NaN 0 0 Median 163150000 81631000 81518000 163150000 81631000 81518000 0 0 0 7269 1505 7428 26506;26507;26508;26509 40031;40032;40033;40034;40035;40036;40037;40038 40035 8 LILPHVPAILQYLSK GIAENIGESITIGGRLILPHVPAILQYLSK LILPHVPAILQYLSKTTISAEKVKKKKNRA R L I S K T 1 0 0 0 0 1 0 0 1 2 4 1 0 0 2 1 0 0 1 1 0 0 15 0 1704.0338 O75691 O75691 1298 1312 UTP20 Small subunit processome component 20 homolog yes yes 3 1.4227E-10 141.65 3 1.0462 1.3066 0.40167 2 Median 1.0462 1.3066 0.40167 2 0 Median NaN NaN NaN 0 0 Median 40664000 20432000 20232000 40664000 20432000 20232000 0 0 0 7270 1207 7429 26510;26511;26512 40039;40040;40041;40042;40043;40044 40039 6 LILSSGSDEECAICLDSLTVPVITHCAHVFCK DTPEELRKKLIRKMKLILSSGSDEECAICL LTVPVITHCAHVFCKPCICQVIQNEQPHAK K L I C K P 2 0 0 2 4 0 2 1 2 3 4 1 0 1 1 4 2 0 0 3 0 0 32 0 3630.719 Q59GQ7;A0A0C4DGA6;Q14527;A8K5B6;H7C5K0 Q59GQ7 750 781 HLTF Helicase-like transcription factor yes no 4 0.038859 28.742 1 0.61407 0.76997 NaN 1 Median 0.61407 0.76997 NaN 1 0 Median NaN NaN NaN 0 0 Median 3807600 1876700 1930900 3807600 1876700 1930900 0 0 0 7271 425 7430 26513 40045 40045 0 LILTEASK IDVTVPLQCLVKDSKLILTEASKAGLPGFY CLVKDSKLILTEASKAGLPGFYDPCVGEEK K L I S K A 1 0 0 0 0 0 1 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 8 0 873.51713 B3KTC6;B4DGD5;B4DPK2;Q9NVH1 B3KTC6 57 64 DNAJC11 DnaJ homolog subfamily C member 11 yes no 2 0.02639 54.157 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3375400 3375400 0 3375400 3375400 0 0 0 0 7272 779 7431 26514 40046 40046 1 LILTLT SHLEEKKRKRKKREKLILTLT_________ KRKRKKREKLILTLT_______________ K L I L T - 0 0 0 0 0 0 0 0 0 1 3 0 0 0 0 0 2 0 0 0 0 0 6 0 672.44218 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 938 943 WDR3 WD repeat-containing protein 3 yes no 1 1.4576E-11 174.24 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23536000 0 0 23536000 0 0 0 0 0 7273 1576 7432 26515;26516;26517;26518 40047;40048;40049;40050 40048 4 LILYNDGDSLQYIER LCDNSVGVLFNDSTRLILYNDGDSLQYIER LILYNDGDSLQYIERDGTESYLTVSSHPNS R L I E R D 0 1 1 2 0 1 1 1 0 2 3 0 0 0 0 1 0 0 2 0 0 0 15 0 1810.9101 B2R841;P53350;B4E083;Q59GD0;D3DWF3 B2R841 442 456 PLK1 Serine/threonine-protein kinase PLK;Serine/threonine-protein kinase PLK1 yes no 2 6.7626E-11 122.42 4 2 0.76685 1.0576 17.077 6 Median 0.73329 0.99377 10.841 4 0 Median 0.84535 1.296 7.7341 2 0 Median 84801000 45453000 39348000 45842000 24312000 21530000 38959000 21141000 17818000 7274 714 7433 26519;26520;26521;26522;26523;26524 40051;40052;40053;40054;40055;40056;40057;40058 40054 8 LINELNER ______________________________ NPLTKVKLINELNEREVQLGVADKVSWHSE K L I E R E 0 1 2 0 0 0 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 8 0 999.53491 Q9Y6G0;Q9Y388;Q5JY83;Q05DU0;Q0VGM7 Q9Y6G0 9 16 RBMX2 RNA-binding motif protein, X-linked 2 yes no 2 0.037453 50.703 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7275 1813 7434 26525 40059 40059 1 LINLVGESLR TDYNNNHEGREEDQRLINLVGESLRLLGNT EEDQRLINLVGESLRLLGNTFVALSDLRCN R L I L R L 0 1 1 0 0 0 1 1 0 1 3 0 0 0 0 1 0 0 0 1 0 0 10 0 1112.6554 F6S6P2;X6REW1;A0A0G2JJM1;A0A0G2JL47;A0A024RCR6;A0A0G2JK23;P46379 F6S6P2 316 325 BAG6;BAT3 Large proline-rich protein BAG6 yes no 2 0.0013792 87.308 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9527800 7358000 2169900 7358000 7358000 0 2169900 0 2169900 7276 301 7435 26526;26527;26528;26529 40060;40061;40062;40063 40061 4 LINNNPEIFGPLK FAEFQEHEHALKALRLINNNPEIFGPLKRP LRLINNNPEIFGPLKRPIVEFSLEDRRKLK R L I L K R 0 0 3 0 0 0 1 1 0 2 2 1 0 1 2 0 0 0 0 0 0 0 13 0 1467.8086 A0A024R753;Q9NW13 A0A024R753 559 571 RBM28 RNA-binding protein 28 yes no 2 2.1945E-12 159.09 3 2 1.0254 1.2515 12.545 5 Median 1.1363 1.434 11.689 3 0 Median 0.78311 1.1913 0.4846 2 0 Median 95951000 49425000 46526000 53488000 24907000 28581000 42462000 24518000 17945000 7277 169 7436 26530;26531;26532;26533;26534 40064;40065;40066;40067;40068;40069;40070;40071;40072;40073;40074;40075 40069 12 LINRPIIVFR ASVETAGDSELFLMKLINRPIIVFRGEHGF LFLMKLINRPIIVFRGEHGFIGCRKVTGTL K L I F R G 0 2 1 0 0 0 0 0 0 3 1 0 0 1 1 0 0 0 0 1 0 0 10 1 1239.7816 B3KTA3;Q16658;B3KTM9;C9JPH9;C9JFC0;A0A0A0MSB2 B3KTA3 359 368 FSCN1 Fascin yes no 3 0.0019783 80.688 2 0.46549 0.60567 NaN 1 Median 0.46549 0.60567 NaN 1 0 Median NaN NaN NaN 0 0 Median 14669000 12269000 2399400 14669000 12269000 2399400 0 0 0 7278 778 7437 26535;26536 40076;40077;40078 40078 3 LIPDSIGK TREVQTNDLKEVVNKLIPDSIGKDIEKACQ LKEVVNKLIPDSIGKDIEKACQSIYPLHDV K L I G K D 0 0 0 1 0 0 0 1 0 2 1 1 0 0 1 1 0 0 0 0 0 0 8 0 841.49092 Q6NXR8;P61247;A8K4W0;D6RG13;D6RAT0;H0Y9Y4;D6RB09;D6R9B6 Q6NXR8 188 195 RPS3A 40S ribosomal protein S3a yes no 2 0.047389 44.395 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27664000 27664000 0 27664000 27664000 0 0 0 0 7279 1393 7438 26537 40079 40079 1 LIPFLEK IESWFMDKNDNELLKLIPFLEKLVELNEDV KNDNELLKLIPFLEKLVELNEDVRPHIRDR K L I E K L 0 0 0 0 0 0 1 0 0 1 2 1 0 1 1 0 0 0 0 0 0 0 7 0 858.52149 A0A024R5Q8;Q05D32 A0A024R5Q8 435 441 CTDSPL2 CTD small phosphatase-like protein 2 yes no 2 0.048171 80.462 1 0.62297 0.80706 NaN 1 Median 0.62297 0.80706 NaN 1 0 Median NaN NaN NaN 0 0 Median 5051500 3006200 2045300 5051500 3006200 2045300 0 0 0 7280 149 7439 26538 40080 40080 1 LIPTAR PLVYPLAQVIIGCIKLIPTARFYPLRMHCI AQVIIGCIKLIPTARFYPLRMHCIRALTLL K L I A R F 1 1 0 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 6 0 669.41736 Q9Y3T9;B3KNC3;Q9H9J5;B4DY21 Q9Y3T9 445 450 NOC2L Nucleolar complex protein 2 homolog yes no 2 0.03763 107.73 2 0.87227 1.1747 41.734 2 Median 0.87227 1.1747 41.734 2 0 Median NaN NaN NaN 0 0 Median 35209000 19570000 15639000 35209000 19570000 15639000 0 0 0 7281 1820 7440 26539;26540 40081;40082 40081 2 LIPTELRR LLLVLRVFLPCDENRLIPTELRREALALQG LPCDENRLIPTELRREALALQGSLEFDDAG R L I R R E 0 2 0 0 0 0 1 0 0 1 2 0 0 0 1 0 1 0 0 0 0 0 8 1 996.60801 H0Y714;Q96G21;B8ZZ47;F8WCN0 H0Y714 30 37 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 3 0.0034465 64.265 2 0.96712 1.3067 13.636 2 Median 0.96712 1.3067 13.636 2 0 Median NaN NaN NaN 0 0 Median 112820000 59374000 53448000 112820000 59374000 53448000 0 0 0 7282 1094 7441 26541;26542 40083;40084;40085 40084 3 LIPVHQVR THSKVLYVYDMLAGKLIPVHQVRGLKEKIV YDMLAGKLIPVHQVRGLKEKIVRSFEVSPD K L I V R G 0 1 0 0 0 1 0 0 1 1 1 0 0 0 1 0 0 0 0 2 0 0 8 0 960.58688 Q9Y5J1;B2RAX6;J3KSR7 Q9Y5J1 330 337 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2;3 0.0013461 94.006 5 2 0.92981 1.3363 5.7982 7 Median 0.98295 1.3388 6.7172 5 0 Median 0.82712 1.3019 3.6943 2 0 Median 280130000 145660000 134470000 216230000 111200000 105030000 63901000 34457000 29443000 7283 1830 7442 26543;26544;26545;26546;26547;26548;26549 40086;40087;40088;40089;40090;40091;40092;40093;40094;40095;40096;40097 40090 12 LIQDQQEQIQHLK HKLDTVSSKIELNRKLIQDQQEQIQHLKST RKLIQDQQEQIQHLKSTTNELKSEKLQIST K L I L K S 0 0 0 1 0 5 1 0 1 2 2 1 0 0 0 0 0 0 0 0 0 0 13 0 1619.8631 Q92878 Q92878 852 864 RAD50 DNA repair protein RAD50 yes yes 3 0.0016849 110.64 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2360400 2360400 0 2360400 2360400 0 0 0 0 7284 1676 7443 26550 40098 40098 1 LIQEIVDK VPRNLVGKVIGKNGKLIQEIVDKSGVVRVR VIGKNGKLIQEIVDKSGVVRVRIEAENEKN K L I D K S 0 0 0 1 0 1 1 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 8 0 956.55425 X5DQX7;Q06787;W5ZQ92;R9WQY1;A8MQB8;G3V0J0;X5D907;R9WNI0;Q59GC1;R9WPL0;A0A087WXI3 X5DQX7 303 310 FMR1 Fragile X mental retardation protein 1 yes no 2 0.015474 64.265 1 1.1168 1.3942 NaN 1 Median 1.1168 1.3942 NaN 1 0 Median NaN NaN NaN 0 0 Median 17985000 6847500 11137000 17985000 6847500 11137000 0 0 0 7285 1447 7444 26551 40099 40099 1 LIQELAK CVCIAEFLSLYETERLIQELAKCKIDTHNI LSLYETERLIQELAKCKIDTHNIIVNQLVF R L I A K C 1 0 0 0 0 1 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 813.496 B4DEE5;A0A087WXS7;O43681 B4DEE5 241 247 ASNA1 ATPase ASNA1 yes no 2 0.038862 55.441 1 0.70436 1.0701 NaN 1 Median NaN NaN NaN 0 0 Median 0.70436 1.0701 NaN 1 0 Median 10673000 6206000 4466800 0 0 0 10673000 6206000 4466800 7286 359 7445 26552 40100 40100 1 LIQEQHPEEELIK AHEERVNEVNQFAAKLIQEQHPEEELIKTK AKLIQEQHPEEELIKTKQDEVNAAWQRLKG K L I I K T 0 0 0 0 0 2 4 0 1 2 2 1 0 0 1 0 0 0 0 0 0 0 13 0 1604.841 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 215 227 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 3 6.6087E-06 126.34 4 1 0.91035 1.1378 45.205 5 Median 0.97783 1.1191 5.4108 4 0 Linear 2.3742 3.1112 NaN 1 0 Median 81680000 38913000 42766000 79118000 38047000 41071000 2561900 866160 1695700 7287 1476 7446 26553;26554;26555;26556;26557 40101;40102;40103;40104;40105;40106 40103 6 LIQLNR HLAKETGYRSRSAFKLIQLNRRFQFLQKAR GYRSRSAFKLIQLNRRFQFLQKARALLDLC K L I N R R 0 1 1 0 0 1 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 6 0 755.46537 Q8IY81;J3KS36;J3KS74;J3QSE2 Q8IY81 32 37 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 0.035081 88.626 1 0.73761 1.0128 NaN 1 Median 0.73761 1.0128 NaN 1 0 Median NaN NaN NaN 0 0 Median 12265000 6913500 5351800 12265000 6913500 5351800 0 0 0 7288 1628 7447 26558 40107 40107 1 LIQPGTFTK NACQWSKDQVNLSPKLIQPGTFTKTKEDIL VNLSPKLIQPGTFTKTKEDILESKSEQTKS K L I T K T 0 0 0 0 0 1 0 1 0 1 1 1 0 1 1 0 2 0 0 0 0 0 9 0 1003.5702 B5BUA4;Q5FBB7 B5BUA4 259 267 SGOL1 Shugoshin-like 1 yes no 2 0.0055975 71.501 1 1 0.58982 0.80555 23.595 2 Median 0.75252 0.95182 NaN 1 0 Median 0.4623 0.68177 NaN 1 0 Median 15373000 9414500 5958400 8148700 4653100 3495600 7224300 4761500 2462800 7289 895 7448 26559;26560 40108;40109 40108 2 LIQQQLEK IACNKQDIAMAKSAKLIQQQLEKELNTLRV AMAKSAKLIQQQLEKELNTLRVTRSAAPST K L I E K E 0 0 0 0 0 3 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 8 0 998.57605 Q549N5;Q9Y5M8;H7C4H2 Q549N5 192 199 SRPRB Signal recognition particle receptor subunit beta yes no 2 0.0078785 104.37 3 0.37916 0.48049 17.161 3 Median 0.37916 0.48049 17.161 3 0 Median NaN NaN NaN 0 0 Median 21931000 15373000 6558000 21931000 15373000 6558000 0 0 0 7290 1545 7449 26561;26562;26563 40110;40111;40112 40112 3 LIQSHPESAEDLQEK ALGDKVNSLGETAERLIQSHPESAEDLQEK LIQSHPESAEDLQEKCTELNQAWSSLGKRA R L I E K C 1 0 0 1 0 2 3 0 1 1 2 1 0 0 1 2 0 0 0 0 0 0 15 0 1722.8424 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16 Q13813 1299 1313 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2;3 2.9314E-28 190.34 9 0.75272 0.9397 12.246 7 Median 0.75272 0.9397 12.246 7 0 Median NaN NaN NaN 0 0 Median 138640000 79878000 58761000 138640000 79878000 58761000 0 0 0 7291 1476 7450 26564;26565;26566;26567;26568;26569;26570;26571;26572 40113;40114;40115;40116;40117;40118;40119;40120;40121;40122;40123;40124;40125;40126 40115 14 LISEILSESVVPDVR SMKHTATARFQRNHRLISEILSESVVPDVR LISEILSESVVPDVRSVVTTARMQVLKRQV R L I V R S 0 1 0 1 0 0 2 0 0 2 2 0 0 0 1 3 0 0 0 3 0 0 15 0 1654.9142 B4DGM3;A0A024R1S7;Q969G3;K7EMQ8;J3QKS7 B4DGM3 184 198 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 2 3.2866E-28 184.03 3 2 0.88164 1.3597 29.291 4 Linear 0.61292 0.84059 7.8588 2 0 Median 0.8465 1.3225 21.419 2 0 Median 72800000 38429000 34371000 18872000 9991000 8880900 53928000 28438000 25491000 7292 66 7451 26573;26574;26575;26576;26577 40127;40128;40129;40130;40131;40132;40133 40127 7 LISLPLSR MADVVVGKDKGGEQRLISLPLSRIRVIMKS DKGGEQRLISLPLSRIRVIMKSSPEVSSIN R L I S R I 0 1 0 0 0 0 0 0 0 1 3 0 0 0 1 2 0 0 0 0 0 0 8 0 897.56475 E5RGS9;Q9NRG0 E5RGS9 16 23 CHRAC1 Chromatin accessibility complex protein 1 yes no 2 0.00021902 125.81 4 2 0.61251 0.82602 3.1787 2 Median 0.60571 0.84479 NaN 1 0 Median 0.61937 0.80766 NaN 1 0 Median 15523000 12864000 2658500 7315600 6598600 716960 8207200 6265700 1941500 7293 1006 7452 26578;26579;26580;26581;26582;26583 40134;40135;40136;40137;40138;40139;40140 40135 7 LISPLASPADGVK TEKESAWSPPPIEIRLISPLASPADGVKSK IRLISPLASPADGVKSKPRKTTEVTGTGLG R L I V K S 2 0 0 1 0 0 0 1 0 1 2 1 0 0 2 2 0 0 0 1 0 0 13 0 1266.7184 Q8WYP5 Q8WYP5 2220 2232 AHCTF1 Protein ELYS yes yes 2 0.00090322 60.434 1 2 0.6414 0.78385 18.615 3 Plateau 0.6414 0.78385 NaN 1 0 Median 0.37889 0.57288 6.1373 2 0 Median 50262000 34417000 15845000 19877000 12465000 7412800 30385000 21953000 8432100 7294 1670 7453 26584;26585;26586 40141;40142;40143;40144;40145 40141 5 LISQIVSSITASLR RNLDIERPTYTNLNRLISQIVSSITASLRF RLISQIVSSITASLRFDGALNVDLTEFQTN R L I L R F 1 1 0 0 0 1 0 0 0 3 2 0 0 0 0 4 1 0 0 1 0 0 14 0 1486.8719 B3KT06;P68363;B3KPS3;A8JZY9;B4DDU2;F8VVB9;C9JDS9;C9J2C0;Q7Z3M3;Q9NY65;Q9H853;Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;P68366 B3KT06 195 208 TUBA1B;TUBA4A;TUBA8;DKFZp686L04275;TUBA4B;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-8 chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-1C chain;Tubulin alpha-4A chain no no 2 9.458E-37 202.05 6 2 0.38238 0.52409 106.16 7 Median 0.37509 0.5173 4.2643 5 0 Median 2.9612 4.542 13.601 2 0 Median 637780000 446280000 191500000 591040000 435720000 155330000 46736000 10561000 36175000 7295 777;1422;1056 7454 26587;26588;26589;26590;26591;26592;26593;26594 40146;40147;40148;40149;40150;40151;40152;40153;40154;40155;40156;40157;40158;40159;40160;40161;40162 40158 17 LISWYDNEFGYSNR FDAGAGIALNDHFVKLISWYDNEFGYSNRV KLISWYDNEFGYSNRVVDLMAHMASKE___ K L I N R V 0 1 2 1 0 0 1 1 0 1 1 0 0 1 0 2 0 1 2 0 0 0 14 0 1762.7951 V9HVZ4;P04406;Q2TSD0;E7EUT5 V9HVZ4 310 323 HEL-S-162eP;GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 2 0.0011009 54.023 1 3.435 5.0146 NaN 1 Median NaN NaN NaN 0 0 Median 3.435 5.0146 NaN 1 0 Median 12883000 3084400 9798900 0 0 0 12883000 3084400 9798900 7296 1231 7455 26595 40163;40164 40163 2 LITAADTTAEQR ARKKEREKRSQDLQKLITAADTTAEQRRTE LQKLITAADTTAEQRRTERKAPKKKLPQKK K L I Q R R 3 1 0 1 0 1 1 0 0 1 1 0 0 0 0 0 3 0 0 0 0 0 12 0 1288.6623 B4DQG8;Q9NPF5;Q5TG40 B4DQG8 261 272 DMAP1 DNA methyltransferase 1-associated protein 1 yes no 2 0.00038457 119.53 2 2 0.47248 0.70582 12.397 3 Plateau 0.41756 0.57667 NaN 1 0 Median 0.44295 0.63185 15.864 2 0 Median 24209000 18218000 5990800 11701000 10319000 1382700 12508000 7899600 4608100 7297 850 7456 26596;26597;26598;26599 40165;40166;40167;40168;40169;40170 40165 6 LITDLQDQNQK KQISSLRDEVEAKAKLITDLQDQNQKMMLE AKAKLITDLQDQNQKMMLEQERLRVEHEKL K L I Q K M 0 0 1 2 0 3 0 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 11 0 1314.6779 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;M1V490;M1VPF9;B4DS27 V9HW29 729 739 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5B-RET(NM_020630)_K22;R12;KIF5B-RET(NM_020975)_K22;R12 Kinesin-like protein;Kinesin-1 heavy chain yes no 2 0.0010958 83.998 3 0.69436 0.89044 NaN 1 Median 0.69436 0.89044 NaN 1 0 Median NaN NaN NaN 0 0 Median 9624300 7262400 2361900 9624300 7262400 2361900 0 0 0 7298 978 7457 26600;26601;26602 40171;40172;40173;40174 40172 4 LITEDVQGK LADLQNDEVAFRKFKLITEDVQGKNCLTNF AFRKFKLITEDVQGKNCLTNFHGMDLTRDK K L I G K N 0 0 0 1 0 1 1 1 0 1 1 1 0 0 0 0 1 0 0 1 0 0 9 0 1001.5393 Q6NXR8;P61247;A8K4W0;B7Z3M5;H0Y8L7;E9PFI5;D6RG13;D6RAT0;D6RB09;D6RAS7;D6RED7;D6RGE0 Q6NXR8 86 94 RPS3A 40S ribosomal protein S3a yes no 2 0.0010667 105.25 5 2 0.77081 1.0122 6.5481 6 Median 0.78943 1.0309 3.5562 4 0 Median 0.57716 0.92288 0.70879 2 0 Median 648460000 375770000 272690000 523800000 295800000 228000000 124660000 79975000 44683000 7299 1393 7458 26603;26604;26605;26606;26607;26608;26609 40175;40176;40177;40178;40179;40180;40181;40182;40183;40184;40185;40186;40187 40183 13 LITGASDSELR RTEVWGLVLLSEEKRLITGASDSELRVWDI EEKRLITGASDSELRVWDIAYLQEIEDPEE R L I L R V 1 1 0 1 0 0 1 1 0 1 2 0 0 0 0 2 1 0 0 0 0 0 11 0 1160.6037 Q5TDG3;Q9UNX4 Q5TDG3 206 216 WDR3 WD repeat-containing protein 3 yes no 2 0.0013341 90.108 3 0.8178 1.1152 3.2206 3 Median 0.8178 1.1152 3.2206 3 0 Median NaN NaN NaN 0 0 Median 39395000 20571000 18824000 39395000 20571000 18824000 0 0 0 7300 1576 7459 26610;26611;26612 40188;40189;40190 40190 3 LITNTAEAVLQK RSRYSGVNQSMLFDKLITNTAEAVLQKMDD FDKLITNTAEAVLQKMDDMKKMRRQRMREL K L I Q K M 2 0 1 0 0 1 1 0 0 1 2 1 0 0 0 0 2 0 0 1 0 0 12 0 1299.7398 A0A024R9G7;Q6PL18 A0A024R9G7 176 187 ATAD2 ATPase family AAA domain-containing protein 2 yes no 2 0.00029155 77.662 1 1 0.95447 1.2498 29.976 2 Median 1.2657 1.5448 NaN 1 0 Median 0.71975 1.0111 NaN 1 0 Median 7858600 4269600 3589000 3655500 1924600 1730900 4203100 2345000 1858100 7301 221 7460 26613;26614 40191;40192;40193 40191 3 LITPAVVSER KATYDKLCKEVPNYKLITPAVVSERLKIRG VPNYKLITPAVVSERLKIRGSLARAALQEL K L I E R L 1 1 0 0 0 0 1 0 0 1 1 0 0 0 1 1 1 0 0 2 0 0 10 0 1083.6288 P62851 P62851 67 76 RPS25 40S ribosomal protein S25 yes yes 2 3.6647E-07 149.82 4 2 0.79663 1.0954 14.478 6 Median 0.77618 1.0601 3.8736 4 0 Median 0.85778 1.4028 4.0447 2 0 Median 871160000 477940000 393220000 669930000 368840000 301090000 201230000 109100000 92125000 7302 1413 7461 26615;26616;26617;26618;26619;26620 40194;40195;40196;40197;40198;40199;40200;40201;40202;40203;40204;40205 40195 12 LIVDEAINEDNSVVSLSQPK DLSTAILKQKNRPNRLIVDEAINEDNSVVS AINEDNSVVSLSQPKMDELQLFRGDTVLLK R L I P K M 1 0 2 2 0 1 2 0 0 2 2 1 0 0 1 3 0 0 0 3 0 0 20 0 2169.1165 V9HW80;P55072 V9HW80 26 45 HEL-S-70;VCP Transitional endoplasmic reticulum ATPase yes no 2 3.5048E-13 119.96 4 0.56163 0.72111 30.263 4 Median 0.56163 0.72111 30.263 4 0 Median NaN NaN NaN 0 0 Median 15019000 9386500 5632200 15019000 9386500 5632200 0 0 0 7303 1376 7462 26621;26622;26623;26624 40206;40207;40208;40209;40210;40211;40212;40213;40214;40215 40215 10 LIVENLSSR SGRDKYGPPVRTEYRLIVENLSSRCSWQDL VRTEYRLIVENLSSRCSWQDLKDFMRQAGE R L I S R C 0 1 1 0 0 0 1 0 0 1 2 0 0 0 0 2 0 0 0 1 0 0 9 0 1029.5819 Q59GY3;V9HVZ0;A8K588;Q13247;A0A0D9SEM4;Q53F45;Q59EF5;A8K644;Q08170;B4DEM8;A0A024R6D8;Q59EK7;Q13243;B4DJK0;B4DUA4 Q59GY3 146 154 HEL-S-91;SRSF6;SRSF4;SFRS4;SFRS5;SRSF5 Serine/arginine-rich splicing factor 6;Serine/arginine-rich splicing factor 4;Serine/arginine-rich splicing factor 5 no no 2 1.9715E-05 137.9 4 2 0.34894 0.48119 58.139 6 Median 0.33058 0.45213 6.2768 4 0 Median 0.89963 1.4147 5.7726 2 0 Median 311440000 217120000 94329000 248470000 186080000 62388000 62973000 31033000 31940000 7304 615;160 7463 26625;26626;26627;26628;26629;26630 40216;40217;40218;40219;40220;40221;40222;40223;40224;40225;40226 40216 11 LIVLLLECK FQQHYTNKIRALRNRLIVLLLECKRSRK__ RALRNRLIVLLLECKRSRK___________ R L I C K R 0 0 0 0 1 0 1 0 0 1 4 1 0 0 0 0 0 0 0 1 0 0 9 0 1099.6675 B4DYG2;O43683;A8K5A6 B4DYG2 1053 1061 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 yes no 2 0.014846 57.177 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7305 873 7464 26631 40227 40227 1 LIVNIAK IEETLSTLRYANQARLIVNIAKVNEDMNAK LRYANQARLIVNIAKVNEDMNAKLIRELKA R L I A K V 1 0 1 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 7 0 769.50617 Q15058 Q15058 700 706 KIF14 Kinesin-like protein KIF14 yes yes 2 0.041035 87.582 2 0.69966 0.91032 19.915 2 Median 0.69966 0.91032 19.915 2 0 Median NaN NaN NaN 0 0 Median 7412100 3650500 3761600 7412100 3650500 3761600 0 0 0 7306 1504 7465 26632;26633 40228;40229 40229 2 LIVNVNDLR YQSKVRELISDNQYRLIVNVNDLRRKNEKR SDNQYRLIVNVNDLRRKNEKRANRLLNNAF R L I L R R 0 1 2 1 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 2 0 0 9 0 1054.6135 Q8NHX6;Q53HJ4;B2R7C5;A0A0S2Z4T1;A0A0S2Z492;P25205 Q8NHX6 47 55 HCC5;MCM3 DNA helicase;DNA replication licensing factor MCM3 yes no 2 0.001156 103.56 3 0.30911 0.42487 8.129 3 Median 0.30911 0.42487 8.129 3 0 Median NaN NaN NaN 0 0 Median 31564000 22504000 9059200 31564000 22504000 9059200 0 0 0 7307 463 7466 26634;26635;26636 40230;40231;40232;40233 40232 4 LIVVLEGASLETVK KRPRLGAGNKIGGRRLIVVLEGASLETVKV RLIVVLEGASLETVKVGKTYELLNCDKHKS R L I V K V 1 0 0 0 0 0 2 1 0 1 3 1 0 0 0 1 1 0 0 3 0 0 14 0 1469.8705 A8K6D2;Q92979;B4DQC7;V9GYP5;A0A087WWQ2;B4DP65 A8K6D2 43 56 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 2 3.2988E-14 148.28 5 1.0089 1.2437 20.251 4 Median 1.0089 1.2437 20.251 4 0 Median NaN NaN NaN 0 0 Median 77166000 34710000 42456000 77166000 34710000 42456000 0 0 0 7308 623 7467 26637;26638;26639;26640;26641 40234;40235;40236;40237;40238;40239;40240 40238 7 LIYFQLHR ALESDNNTALLLSKKLIYFQLHRALKMIVD ALLLSKKLIYFQLHRALKMIVDPVEPHGEM K L I H R A 0 1 0 0 0 1 0 0 1 1 2 0 0 1 0 0 0 0 1 0 0 0 8 0 1088.6131 B2R8R5;Q13263 B2R8R5 367 374 TRIM28 Transcription intermediary factor 1-beta yes no 3 0.0020422 90.777 3 0.27521 0.37069 10.994 3 Median 0.27521 0.37069 10.994 3 0 Median NaN NaN NaN 0 0 Median 18559000 13482000 5077300 18559000 13482000 5077300 0 0 0 7309 716 7468 26642;26643;26644 40241;40242;40243;40244;40245 40242 5 LKDEDDEDDCFILEK YDRETYPDDPCFPSKLKDEDDEDDCFILEK LKDEDDEDDCFILEKAARGKRPIFECFWNG K L K E K A 0 0 0 5 1 0 3 0 0 1 2 2 0 1 0 0 0 0 0 0 0 0 15 1 1882.8142 A6NHR9 A6NHR9 449 463 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3 0.021023 71.529 2 0.84814 1.0528 7.3095 2 Median 0.84814 1.0528 7.3095 2 0 Median NaN NaN NaN 0 0 Median 20655000 9526100 11129000 20655000 9526100 11129000 0 0 0 7310 568 7469 26645;26646 40246;40247 40246 1 LKDPANFQYPAESVLAYK MNFNPIISRKDITGKLKDPANFQYPAESVL PANFQYPAESVLAYKEGHLSPDIVAEQKKL K L K Y K E 3 0 1 1 0 1 1 0 0 0 2 2 0 1 2 1 0 0 2 1 0 0 18 1 2053.052 B4DLR8;Q3B792;P15559;H3BNV2;H3BRK3;Q53G81 B4DLR8 60 77 NQO1 NAD(P)H dehydrogenase [quinone] 1 yes no 3 0.0081589 52.185 2 0.34852 0.43009 15.265 2 Median 0.34852 0.43009 15.265 2 0 Median NaN NaN NaN 0 0 Median 25339000 15898000 9441600 25339000 15898000 9441600 0 0 0 7311 829 7470 26647;26648 40248;40249;40250 40248 3 LKEDVLEQR KAEARAFEEDQVAGRLKEDVLEQRGRLQKL DQVAGRLKEDVLEQRGRLQKLVAKEIQAPA R L K Q R G 0 1 0 1 0 1 2 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 9 1 1128.6139 O43818 O43818 112 120 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 0.0066748 110.41 1 0.48155 0.65283 NaN 1 Median 0.48155 0.65283 NaN 1 0 Median NaN NaN NaN 0 0 Median 6724600 4627300 2097300 6724600 4627300 2097300 0 0 0 7312 1188 7471 26649 40251 40251 1 LKETYEALLARFPNLR SLLEKRRQLSRDIGRLKETYEALLARFPNL KETYEALLARFPNLRFAYKDPEKNWNRNCV R L K L R F 2 2 1 0 0 0 2 0 0 0 4 1 0 1 1 0 1 0 1 0 0 0 16 2 1933.0785 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 492 507 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 4 0.035628 15.635 1 0.56861 0.90226 NaN 1 Median NaN NaN NaN 0 0 Median 0.56861 0.90226 NaN 1 0 Median 5847100 3373000 2474100 0 0 0 5847100 3373000 2474100 7313 50 7472 26650 40252 40252 1 LKGDDLQAIK FNSKSGQRGSSKSGKLKGDDLQAIKKELTQ SKSGKLKGDDLQAIKKELTQIKQKVDSLLE K L K I K K 1 0 0 2 0 1 0 1 0 1 2 2 0 0 0 0 0 0 0 0 0 0 10 1 1099.6237 B2R5W2;G3V4C1;G3V4W0;B4DY08;B3KX96;B2R603;G3V2Q1;P07910;G3V576;A8K9A4;G3V2D6;D3DPI2;B4DQQ2;Q6PKD2;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8 B2R5W2 175 184 HNRNPC;hCG_1641229;HNRPCL1;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 no no 2 5.1484E-07 140.45 1 0.57242 0.70097 NaN 1 Median 0.57242 0.70097 NaN 1 0 Median NaN NaN NaN 0 0 Median 60362000 38646000 21716000 60362000 38646000 21716000 0 0 0 7314 694 7473 26651 40253;40254 40253 2 LKGDDLQAIKK FNSKSGQRGSSKSGKLKGDDLQAIKKELTQ KSGKLKGDDLQAIKKELTQIKQKVDSLLEN K L K K K E 1 0 0 2 0 1 0 1 0 1 2 3 0 0 0 0 0 0 0 0 0 0 11 2 1227.7187 B2R5W2;G3V4C1;G3V4W0;B4DY08;B3KX96;B2R603;G3V2Q1;P07910;G3V576;A8K9A4;G3V2D6;B4DQQ2 B2R5W2 175 185 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 no no 2;3 8.7303E-23 171.09 6 1 0.62558 0.7135 27.608 7 Median 0.61182 0.70747 17.71 6 0 Median 0.77425 1.3371 NaN 1 0 Median 455560000 276270000 179300000 431170000 262420000 168750000 24391000 13843000 10547000 7315 694 7474 26652;26653;26654;26655;26656;26657;26658 40255;40256;40257;40258;40259;40260;40261;40262;40263;40264;40265;40266 40262 12 LKLEAELGNMQGLVEDFK INNLRRQLETLGQEKLKLEAELGNMQGLVE EAELGNMQGLVEDFKNKYEDEINKRTEMEN K L K F K N 1 0 1 1 0 1 3 2 0 0 4 2 1 1 0 0 0 0 0 1 0 0 18 1 2033.0503 CON__P05787;P05787;Q969I0;F8VUG2;F8VP67;H0YIB2;F8W1U3 CON__P05787 159 176 KRT8 Keratin, type II cytoskeletal 8 no no 3 1.5599E-07 73.11 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11982000 11982000 0 11982000 11982000 0 0 0 0 + 7316 955;1068 7475 26659;26660 40267;40268;40269 40267 3 LKLEQIDGHIAEHNSK QENEHALQKDALSIKLKLEQIDGHIAEHNS KLEQIDGHIAEHNSKIKYWHKEISKISLHP K L K S K I 1 0 1 1 0 1 2 1 2 2 2 2 0 0 0 1 0 0 0 0 0 0 16 1 1830.9588 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1016 1031 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3;4 0.00066556 151.49 3 0.74234 0.92405 25.774 3 Median 0.74234 0.92405 25.774 3 0 Median NaN NaN NaN 0 0 Median 80704000 48605000 32099000 80704000 48605000 32099000 0 0 0 7317 1760 7476 26661;26662;26663 40270;40271;40272;40273 40270 4 LKPESSQQPGQDALAVK NTEQMREAFATAFSKLKPESSQQPGQDALA PESSQQPGQDALAVKAGHGYDSKKQQELTA K L K V K A 2 0 0 1 0 3 1 1 0 0 2 2 0 0 2 2 0 0 0 1 0 0 17 1 1794.9476 A0A024RBU4;O96006;C9JXP4 A0A024RBU4 97 113 hCG_1981838;ZBED1 Zinc finger BED domain-containing protein 1 yes no 3 0.0016942 27.526 1 0.31658 0.38733 NaN 1 Median 0.31658 0.38733 NaN 1 0 Median NaN NaN NaN 0 0 Median 24996000 19298000 5697600 24996000 19298000 5697600 0 0 0 7318 282 7477 26664 40274 40274 1 LKPGAPLRPK EHSVMTYLSQFPKAKLKPGAPLRPKLNPKK FPKAKLKPGAPLRPKLNPKKARAYGPGIEP K L K P K L 1 1 0 0 0 0 0 1 0 0 2 2 0 0 3 0 0 0 0 0 0 0 10 2 1075.6866 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98 P21333 269 278 FLNA Filamin-A yes no 3 0.0051902 85.862 2 0.78452 0.95667 3.5273 2 Median 0.78452 0.95667 3.5273 2 0 Median NaN NaN NaN 0 0 Median 40127000 21821000 18307000 40127000 21821000 18307000 0 0 0 7319 1287 7478 26665;26666 40275;40276 40275 2 LKPQYLEELPGQLK RTQLIRLCYSSDHEKLKPQYLEELPGQLKQ KLKPQYLEELPGQLKQFSMFLGKFSWFAGE K L K L K Q 0 0 0 0 0 2 2 1 0 0 4 2 0 0 2 0 0 0 1 0 0 0 14 1 1654.9294 Q6FGJ9;Q59EJ5;P21266;A4UJ43;A0A0A0MTN3;B4E2J2 Q6FGJ9 127 140 GSTM3 Glutathione S-transferase Mu 3 yes no 3 2.3611E-05 107.11 3 0.31834 0.39247 7.9823 3 Median 0.31834 0.39247 7.9823 3 0 Median NaN NaN NaN 0 0 Median 90571000 69334000 21237000 90571000 69334000 21237000 0 0 0 7320 1286 7479 26667;26668;26669 40277;40278;40279;40280;40281;40282 40278 6 LKVPPAINQFTQALDR RYIRLQRQRAILYKRLKVPPAINQFTQALD KVPPAINQFTQALDRQTATQLLKLAHKYRP R L K D R Q 2 1 1 1 0 2 0 0 0 1 2 1 0 1 2 0 1 0 0 1 0 0 16 1 1810.0101 P62424;Q5T8U3 P62424 74 89 RPL7A 60S ribosomal protein L7a yes no 3 1.1076E-05 91.592 2 1 0.72859 0.95014 17.775 3 Plateau 0.72617 0.95469 0.67621 2 0 Median 0.44695 0.70179 NaN 1 0 Median 58478000 36447000 22031000 45637000 27973000 17664000 12841000 8474300 4367000 7321 1411 7480 26670;26671;26672 40283;40284;40285;40286;40287 40285 5 LKYENEVALR LLQIDNARLAADDFRLKYENEVALRQSVEA ADDFRLKYENEVALRQSVEADINGLRRVLD R L K L R Q 1 1 1 0 0 0 2 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 10 1 1233.6717 CON__P13645;P13645 CON__P13645 236 245 KRT10 Keratin, type I cytoskeletal 10 yes no 3 0.00018633 104.22 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 136600000 136600000 0 136600000 136600000 0 0 0 0 + 7322 960 7481 26673;26674 40288;40289 40289 2 LLAAFEER KYSTWEPEENILDARLLAAFEEREREMELY ENILDARLLAAFEEREREMELYGPKKRGPK R L L E R E 2 1 0 0 0 0 2 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 947.50763 Q9HC52;C9J6K3;C9JM54 Q9HC52 53 60 CBX8 Chromobox protein homolog 8 yes no 2 0.025449 77.058 2 0.67102 0.9469 6.8073 2 Median 0.67102 0.9469 6.8073 2 0 Median NaN NaN NaN 0 0 Median 7754400 4194300 3560100 7754400 4194300 3560100 0 0 0 7323 1750 7482 26675;26676 40290;40291 40291 2 LLACIASR AKISSLLEEQFQQGKLLACIASRPGQCGRA EQFQQGKLLACIASRPGQCGRADGYVLEGK K L L S R P 2 1 0 0 1 0 0 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 8 0 902.50077 Q5JR94;P62241;Q5JR95;Q9BS10 Q5JR94 171 178 RPS8 40S ribosomal protein S8 yes no 2 8.4885E-17 182.95 2 2 0.92987 0.71612 47.448 4 Linear 0.78033 1.0754 0.70884 2 0 Median 0.29644 0.47288 1.9003 2 0 Median 499520000 296640000 202890000 420230000 235850000 184390000 79289000 60789000 18500000 7324 1399 7483 26677;26678;26679;26680 40292;40293;40294;40295;40296;40297 40295 6 LLACIASRPGQCGR AKISSLLEEQFQQGKLLACIASRPGQCGRA KLLACIASRPGQCGRADGYVLEGKELEFYL K L L G R A 2 2 0 0 2 1 0 2 0 1 2 0 0 0 1 1 0 0 0 0 0 0 14 1 1557.7868 Q5JR94;P62241;Q5JR95;Q9BS10 Q5JR94 171 184 RPS8 40S ribosomal protein S8 yes no 2;3 3.074E-07 132.56 6 1 0.82024 1.1291 46.044 7 Median 0.82889 1.1432 3.3366 6 0 Median 0.20868 0.33603 NaN 1 0 Median 1505100000 854290000 650850000 1456100000 814500000 641630000 49013000 39794000 9219500 7325 1399 7484 26681;26682;26683;26684;26685;26686;26687 40298;40299;40300;40301;40302;40303;40304;40305;40306;40307;40308;40309;40310;40311;40312;40313 40302 16 LLADQAEAR MEHIHKLKADKARKKLLADQAEARRSKTKE DKARKKLLADQAEARRSKTKEARKRREERL K L L A R R 3 1 0 1 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 0 985.51926 J3QR09;J3KTE4;Q53G49;P84098;Q8IWR8 J3QR09 151 159 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 2 1.1409E-21 183.74 3 2 0.81273 1.1149 29.362 5 Plateau 0.81395 1.127 2.5801 3 0 Plateau 0.38879 0.64431 1.8065 2 0 Median 2155800000 1298000000 857790000 1591000000 891100000 699870000 564790000 406880000 157910000 7326 1138 7485 26688;26689;26690;26691;26692 40314;40315;40316;40317;40318;40319;40320;40321;40322 40318 9 LLADQAEARR MEHIHKLKADKARKKLLADQAEARRSKTKE KARKKLLADQAEARRSKTKEARKRREERLQ K L L R R S 3 2 0 1 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 1 1141.6204 J3QR09;J3KTE4;Q53G49;P84098;Q8IWR8 J3QR09 151 160 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 2;3 2.7934E-05 103.74 6 3 0.91919 1.2429 47.801 9 Median 0.98023 1.3502 9.4168 6 0 Median 0.37701 0.53159 3.2235 3 0 Median 262050000 134850000 127200000 238700000 118160000 120540000 23349000 16688000 6660600 7327 1138 7486 26693;26694;26695;26696;26697;26698;26699;26700;26701 40323;40324;40325;40326;40327;40328;40329;40330;40331;40332 40328 10 LLAEGHPDPDAELQR DRKREKEELEEIRQRLLAEGHPDPDAELQR LLAEGHPDPDAELQRMEQEAERRRQPQIKQ R L L Q R M 2 1 0 2 0 1 2 1 1 0 3 0 0 0 2 0 0 0 0 0 0 0 15 0 1659.8216 P49756 P49756 550 564 RBM25 RNA-binding protein 25 yes yes 3 0.0018848 27.643 1 0.61117 0.83524 NaN 1 Median 0.61117 0.83524 NaN 1 0 Median NaN NaN NaN 0 0 Median 9603000 6501200 3101800 9603000 6501200 3101800 0 0 0 7328 1355 7487 26702 40333;40334 40333 2 LLAEILR KIQEENVIPREKTLRLLAEILREGNQEVPF IPREKTLRLLAEILREGNQEVPFDVPELWY R L L L R E 1 1 0 0 0 0 1 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 7 0 826.52764 E5KNY5;P42704;B4DSR0 E5KNY5 995 1001 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.012141 114.59 2 0.32332 0.45559 NaN 1 Median 0.32332 0.45559 NaN 1 0 Median NaN NaN NaN 0 0 Median 10164000 9392800 771260 10164000 9392800 771260 0 0 0 7329 1001 7488 26703;26704 40335;40336 40335 2 LLAETHYQLGLAYGYNSQYDEAVAQFSK SCLNLQEQYLEAHDRLLAETHYQLGLAYGY GYNSQYDEAVAQFSKSIEVIENRMAVLNEQ R L L S K S 4 0 1 1 0 3 2 2 1 0 4 1 0 1 0 2 1 0 4 1 0 0 28 0 3178.5247 E9PRH9;H0YF33;O95138;Q9P1N1;Q5T624;Q5T626;B4DS57;Q53H03;P49321;H0YDS9 E9PRH9 179 206 NASP Nuclear autoantigenic sperm protein yes no 3 0.0047181 55.852 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1619600 1619600 0 1619600 1619600 0 0 0 0 7330 853 7489 26705 40337 40337 1 LLAGEGPDVLVYSLDFGGHLR LILLPVTGLECVGDRLLAGEGPDVLVYSLD PDVLVYSLDFGGHLRMIKRVQNLLGHYLIH R L L L R M 1 1 0 2 0 0 1 4 1 0 5 0 0 1 1 1 0 0 1 2 0 0 21 0 2227.1637 A0A087X295;Q9NNW5;B3KRR8;Q9NW86 A0A087X295 61 81 WDR6 WD repeat-containing protein 6 yes no 3 0.00072583 55.763 2 0.61999 0.84456 37.352 2 Median 0.61999 0.84456 37.352 2 0 Median NaN NaN NaN 0 0 Median 7196100 4149100 3047000 7196100 4149100 3047000 0 0 0 7331 376 7490 26706;26707 40338;40339;40340 40340 3 LLAIQAK DTEAEDMISAVKSRRLLAIQAKKEREIQER ISAVKSRRLLAIQAKKEREIQEREMKVKLE R L L A K K 2 0 0 0 0 1 0 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 755.49052 Q9UIG0 Q9UIG0 847 853 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.011072 107.55 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30341000 0 30341000 30341000 0 30341000 0 0 0 7332 1786 7491 26708;26709 40341;40342 40342 2 LLALNSLYSPK FWSHETRLPSNTLDRLLALNSLYSPKIEVH TLDRLLALNSLYSPKIEVHFLSLATNFLLE R L L P K I 1 0 1 0 0 0 0 0 0 0 4 1 0 0 1 2 0 0 1 0 0 0 11 0 1217.702 P78527 P78527 2539 2549 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 9.2356E-05 91.584 1 2 0.6767 1.0197 39.96 3 Median 0.43116 0.52679 NaN 1 0 Median 0.69743 1.0505 4.2124 2 0 Median 56594000 36955000 19639000 21417000 15164000 6253500 35177000 21792000 13385000 7333 1427 7492 26710;26711;26712 40343;40344;40345;40346 40343 4 LLALQR VTEKEGDYVPPEKLKLLALQRGEDPGNLNE DYVPPEKLKLLALQRGEDPGNLNESEEEEE K L L Q R G 1 1 0 0 0 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 6 0 712.45956 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6;H7C267;Q6ZUE0;Q674R7 B5MCF9 425 430 PES1;ATG9B Pescadillo homolog;Autophagy-related protein 9B yes no 2 0.023874 123.07 3 0.91421 1.2527 18.72 3 Median 0.91421 1.2527 18.72 3 0 Median NaN NaN NaN 0 0 Median 112880000 55549000 57335000 112880000 55549000 57335000 0 0 0 7334 735 7493 26713;26714;26715 40347;40348;40349 40347 3 LLANQQVFHISCFR ETCVECQKTVYPMERLLANQQVFHISCFRC RLLANQQVFHISCFRCSYCNNKLSLGTYAS R L L F R C 1 1 1 0 1 2 0 0 1 1 2 0 0 2 0 1 0 0 0 1 0 0 14 0 1731.8879 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2 F8VQE1 242 255 LIMA1 LIM domain and actin-binding protein 1 yes no 2;3 8.6362E-15 119.39 5 2 0.70197 0.9416 38.584 7 Median 0.65073 0.9013 5.0918 5 0 Median 1.4041 1.996 4.0464 2 0 Median 466410000 256050000 210370000 449210000 249420000 199790000 17204000 6627300 10577000 7335 834 7494 26716;26717;26718;26719;26720;26721;26722 40350;40351;40352;40353;40354;40355;40356;40357;40358;40359;40360;40361 40356 12 LLAPDCEIIQEVGK QDGLLFKVTLGLIRKLLAPDCEIIQEVGKL KLLAPDCEIIQEVGKLYPLEIVFGMNGRIW K L L G K L 1 0 0 1 1 1 2 1 0 2 2 1 0 0 1 0 0 0 0 1 0 0 14 0 1583.8229 Q9NQT5 Q9NQT5 210 223 EXOSC3 Exosome complex component RRP40 yes yes 2 1.6208E-05 116.55 3 2 0.61166 0.77107 9.0645 4 Median 0.63273 0.80349 7.414 3 0 Median 0.48759 0.69814 NaN 1 0 Median 32291000 22793000 9497100 20888000 12879000 8009000 11402000 9914100 1488100 7336 1754 7495 26723;26724;26725;26726;26727 40362;40363;40364;40365;40366;40367;40368;40369;40370 40363 9 LLASANLEEVTMK KKPPTDEELKETIKKLLASANLEEVTMKQI KKLLASANLEEVTMKQICKKVYENYPTYDL K L L M K Q 2 0 1 0 0 0 2 0 0 0 3 1 1 0 0 1 1 0 0 1 0 0 13 0 1417.7487 B4DNW3;H0Y993;P35659;B4DFG0 P35659 332 344 DEK Protein DEK no no 2 3.1117E-08 107.06 3 4 0.61995 0.88454 13.784 4 Median 0.78477 0.99652 7.2039 2 0 Median 0.50531 0.79793 4.9198 2 0 Median 650300000 507650000 142650000 17378000 9201500 8176100 632920000 498450000 134470000 7337 1322;843 7496;7497 26728;26729;26730;26731;26732;26733;26734 40371;40372;40373;40374;40375;40376;40377;40378;40379 40375 297 9 LLASDLQR EIFLTVPVGGGESLRLLASDLQRHSIAQLD GGGESLRLLASDLQRHSIAQLDPEALGNIK R L L Q R H 1 1 0 1 0 1 0 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 8 0 914.51853 A8K7A2;Q53HL2 A8K7A2 241 248 CDCA8 Borealin yes no 2 7.3335E-12 173.85 3 2 0.9552 1.3097 11.86 5 Median 0.96095 1.3274 4.8853 3 0 Median 0.67892 1.1029 1.768 2 0 Median 459110000 251570000 207530000 326380000 172340000 154040000 132730000 79232000 53494000 7338 632 7498 26735;26736;26737;26738;26739 40380;40381;40382;40383;40384;40385;40386;40387 40384 8 LLASINSTVR EVKGAVYSMVEFNGKLLASINSTVRLYEWT EFNGKLLASINSTVRLYEWTTEKELRTECN K L L V R L 1 1 1 0 0 0 0 0 0 1 2 0 0 0 0 2 1 0 0 1 0 0 10 0 1072.6241 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 880 889 DDB1 DNA damage-binding protein 1 yes no 2 8.9557E-06 110.87 4 2 0.84064 1.2289 6.8208 6 Median 0.85166 1.177 5.6645 4 0 Median 0.81815 1.3083 3.835 2 0 Median 292310000 152520000 139790000 209820000 110040000 99772000 82499000 42479000 40020000 7339 1520 7499 26740;26741;26742;26743;26744;26745 40388;40389;40390;40391;40392;40393;40394;40395;40396;40397;40398 40392 11 LLASLVK HQYQFLEDAVRNQRKLLASLVKRLGDKHAT DAVRNQRKLLASLVKRLGDKHATLQKSTKE K L L V K R 1 0 0 0 0 0 0 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 7 0 742.49528 B2R8R5;Q13263;M0R3C0 B2R8R5 255 261 TRIM28 Transcription intermediary factor 1-beta yes no 2 0.01617 83.614 2 0.30776 0.38779 4.3632 2 Median 0.30776 0.38779 4.3632 2 0 Median NaN NaN NaN 0 0 Median 25293000 18735000 6557900 25293000 18735000 6557900 0 0 0 7340 716 7500 26746;26747 40399;40400;40401 40401 3 LLASPSSR RSRVFDLQFSTDSPRLLASPSSRSIDISAT FSTDSPRLLASPSSRSIDISATIPKFTNTQ R L L S R S 1 1 0 0 0 0 0 0 0 0 2 0 0 0 1 3 0 0 0 0 0 0 8 0 829.46577 Q15003;B4DRG7;E9PHA2;A8K4T8;C9J470;C9JZP1 Q15003 84 91 NCAPH Condensin complex subunit 2 yes no 2 0.0058813 87.181 1 2 0.48293 0.68125 44.082 2 Median 0.70302 0.93042 NaN 1 0 Median 0.33174 0.49881 NaN 1 0 Median 31972000 22965000 9007100 11700000 6820700 4879300 20272000 16145000 4127800 7341 1500 7501 26748;26749;26750 40402;40403;40404;40405 40402 4 LLASQGSQGAPLLSTPK SMDPAMLERLLSLDRLLASQGSQGAPLLST ASQGSQGAPLLSTPKRERMVLMKTVEEKDL R L L P K R 2 0 0 0 0 2 0 2 0 0 4 1 0 0 2 3 1 0 0 0 0 0 17 0 1666.9254 Q14807;A0A024R632;B7Z9T5;H3BRB3 Q14807 449 465 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 2.2766E-43 203.74 4 2 0.89172 1.1344 15.265 6 Median 0.96889 1.212 6.7893 4 0 Median 0.57043 0.90614 5.5459 2 0 Median 143040000 81462000 61581000 67798000 32370000 35429000 75244000 49092000 26152000 7342 1497 7502 26751;26752;26753;26754;26755;26756 40406;40407;40408;40409;40410;40411;40412;40413;40414;40415;40416;40417 40408 12 LLASQLEEIK NDLQDNYLSEQNKNKLLASQLEEIKLQIKK QNKNKLLASQLEEIKLQIKKQKELENGEVE K L L I K L 1 0 0 0 0 1 2 0 0 1 3 1 0 0 0 1 0 0 0 0 0 0 10 0 1142.6547 A0A024RAC0;Q86V48 A0A024RAC0 335 344 LUZP1 Leucine zipper protein 1 yes no 2 0.023051 74.165 2 1.6441 2.0714 33.3 2 Median 1.6441 2.0714 33.3 2 0 Median NaN NaN NaN 0 0 Median 13794000 4588400 9205300 13794000 4588400 9205300 0 0 0 7343 238 7503 26757;26758 40418;40419 40418 2 LLASSPALPSSGAQAR LSDSPLLGPPVGEPRLLASSPALPSSGAQA LASSPALPSSGAQARLTRAPGPPHSAHALP R L L A R L 4 1 0 0 0 1 0 1 0 0 3 0 0 0 2 4 0 0 0 0 0 0 16 0 1524.826 B4DZT6;Q9NYZ3;A0A024R4V8 B4DZT6 143 158 GTSE1 G2 and S phase-expressed protein 1 yes no 2 2.0693E-05 72.958 2 0.40494 0.57562 12.568 2 Median 0.40494 0.57562 12.568 2 0 Median NaN NaN NaN 0 0 Median 8075100 5602200 2472900 8075100 5602200 2472900 0 0 0 7344 881 7504 26759;26760 40420;40421;40422;40423 40423 4 LLASTLVHSVK PLDDSNRPASLTKDRLLASTLVHSVKKEQE TKDRLLASTLVHSVKKEQEFRSIFDHIKLP R L L V K K 1 0 0 0 0 0 0 0 1 0 3 1 0 0 0 2 1 0 0 2 0 0 11 0 1166.7023 Q6DCA8;E9PK09;E9PQN2;E9PKI6;E9PK91;Q9NYF8;E9PJA7 Q6DCA8 570 580 BCLAF1 Bcl-2-associated transcription factor 1 yes no 3 0.0088338 38.791 1 0.71178 1.0387 NaN 1 Median NaN NaN NaN 0 0 Median 0.71178 1.0387 NaN 1 0 Median 5477300 3117000 2360400 0 0 0 5477300 3117000 2360400 7345 1036 7505 26761 40424 40424 1 LLATASFTK TDEMTHKETNEQEERLLATASFTKSSRSSR NEQEERLLATASFTKSSRSSRTRSSKAILL R L L T K S 2 0 0 0 0 0 0 0 0 0 2 1 0 1 0 1 2 0 0 0 0 0 9 0 950.54368 Q8WYP5;B3KRD0;H7C4S1 Q8WYP5 2084 2092 AHCTF1 Protein ELYS yes no 2 0.0036172 78.334 2 2 0.71952 0.92895 7.4372 4 Linear 0.69889 0.87137 3.7406 2 0 Median 0.64071 0.98282 2.6627 2 0 Median 162380000 96361000 66018000 114270000 68210000 46060000 48109000 28151000 19958000 7346 1670 7506 26762;26763;26764;26765 40425;40426;40427;40428;40429;40430 40430 6 LLATEQEDAAVAK DPVAILKRQLEEKEKLLATEQEDAAVAKSK EKLLATEQEDAAVAKSKLRELNKEMAAEKA K L L A K S 4 0 0 1 0 1 2 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 13 0 1357.7089 A0A0A0MRV0;A7BI36;Q9P2E9;F8W7S5;A1A5C4;A0A087WVV2;A1A5C5 A0A0A0MRV0 708 720 RRBP1 Ribosome-binding protein 1 yes no 2 0.016237 51.762 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7347 390 7507 26766 40431 40431 1 LLATLR SDDCLVKIWATDDGRLLATLRGHAAEISDM KIWATDDGRLLATLRGHAAEISDMAVNYEN R L L L R G 1 1 0 0 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 6 0 685.44866 Q8WWQ0 Q8WWQ0 217 222 PHIP PH-interacting protein no no 2 0.026698 120.76 2 0.80362 1.092 9.4314 2 Median 0.80362 1.092 9.4314 2 0 Median NaN NaN NaN 0 0 Median 60625000 32590000 28035000 60625000 32590000 28035000 0 0 0 7348 1668 7508 26767;26768 40432;40433 40432 2 LLAVSLLDCTVK LDEDVLCVSYSPNQKLLAVSLLDCTVKIFY NQKLLAVSLLDCTVKIFYVDTLKFFLSLYG K L L V K I 1 0 0 1 1 0 0 0 0 0 4 1 0 0 0 1 1 0 0 2 0 0 12 0 1330.753 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 563 574 WDR3 WD repeat-containing protein 3 yes no 2 1.5544E-07 120.09 3 2 0.81926 1.0265 52.649 5 Median 0.9131 1.1566 9.7258 3 0 Median 0.38687 0.58452 74.549 2 0 Median 145000000 86005000 58993000 113520000 61678000 51839000 31481000 24327000 7154300 7349 1576 7509 26769;26770;26771;26772;26773 40434;40435;40436;40437;40438;40439;40440;40441;40442;40443 40439 10 LLAVTDTGALYLYDVEVK RPGTLKAVTLAGSWRLLAVTDTGALYLYDV VTDTGALYLYDVEVKCWEQLLEDKHFQSYC R L L V K C 2 0 0 2 0 0 1 1 0 0 4 1 0 0 0 0 2 0 2 3 0 0 18 0 1982.0612 A0A087X295;Q9NNW5;Q8NDH0;E9PDU5;B4E256;B4DK45 A0A087X295 392 409 WDR6;DKFZp434F1720 WD repeat-containing protein 6 yes no 2 0.0011565 99.834 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 207280 0 207280 207280 0 207280 0 0 0 7350 376 7510 26774;26775 40444;40445 40445 2 LLDAESEDRPK EMEFRSAQIADLQQKLLDAESEDRPKQRWE LQQKLLDAESEDRPKQRWENIATILEAKCA K L L P K Q 1 1 0 2 0 0 2 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 11 1 1271.6357 Q59HG1;O95239;B4DYE2;Q2VIQ3;B3KNC0 Q59HG1 844 854 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2;3 1.3209E-08 159.79 8 1 0.84449 1.1106 8.0927 8 Median 0.85612 1.1217 8.624 7 0 Median 0.65518 1.0943 NaN 1 0 Median 302000000 162270000 139730000 251240000 131300000 119930000 50759000 30969000 19790000 7351 1216 7511 26776;26777;26778;26779;26780;26781;26782;26783;26784 40446;40447;40448;40449;40450;40451;40452;40453;40454;40455;40456;40457;40458;40459 40450 14 LLDAPGIVPGPNSEVGTILR ITKFMQEVYLDKFIRLLDAPGIVPGPNSEV GIVPGPNSEVGTILRNCVHVQKLADPVTPV R L L L R N 1 1 1 1 0 0 1 3 0 2 3 0 0 0 3 1 1 0 0 2 0 0 20 0 2017.1208 Q05DU1;A0A024R9Y6;Q9NVN8 Q05DU1 301 320 GNL3L Guanine nucleotide-binding protein-like 3-like protein yes no 2 0.0018732 37.613 1 0.39252 0.51997 NaN 1 Median 0.39252 0.51997 NaN 1 0 Median NaN NaN NaN 0 0 Median 6486800 4310300 2176400 6486800 4310300 2176400 0 0 0 7352 233 7512 26785 40460;40461 40461 2 LLDAQLATGGIVDPR QAMKKELIPTEEALRLLDAQLATGGIVDPR LLDAQLATGGIVDPRLGFHLPLEVAYQRGY R L L P R L 2 1 0 2 0 1 0 2 0 1 3 0 0 0 1 0 1 0 0 1 0 0 15 0 1537.8464 Q15149;D3DWL0;Q96IE3 Q15149 3936 3950 PLEC;PLEC1 Plectin yes no 2 4.9733E-41 211.83 4 2 0.64878 0.88506 74.155 6 Median 0.63453 0.85939 4.307 4 0 Median 2.5408 3.5699 17.661 2 0 Median 193330000 109400000 83930000 172700000 103880000 68823000 20632000 5526000 15106000 7353 1507 7513 26786;26787;26788;26789;26790;26791 40462;40463;40464;40465;40466;40467;40468;40469;40470;40471 40463 10 LLDAQLATGGLVCPAR QAMKKGLVDRPLALRLLDAQLATGGLVCPA LDAQLATGGLVCPARRLRLPLEAALRCGCL R L L A R R 3 1 0 1 1 1 0 2 0 0 4 0 0 0 1 0 1 0 0 1 0 0 16 0 1653.8872 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 394 409 EPPK1 Epiplakin no no 2 1.0192E-06 105.65 2 0.46887 0.65645 38.128 2 Median 0.46887 0.65645 38.128 2 0 Median NaN NaN NaN 0 0 Median 6224700 4149100 2075600 6224700 4149100 2075600 0 0 0 7354 373;1386 7514 26792;26793 40472;40473 40473 1 LLDAQLSTGGIVDPSK QALKKGLIPREQGLRLLDAQLSTGGIVDPS LDAQLSTGGIVDPSKSHRVPLDVACARGCL R L L S K S 1 0 0 2 0 1 0 2 0 1 3 1 0 0 1 2 1 0 0 1 0 0 16 0 1612.8672 Q15149;D3DWL0 Q15149 3270 3285 PLEC;PLEC1 Plectin yes no 2 7.2736E-35 192.14 4 2 0.69872 0.86504 89.424 5 Median 0.61975 0.77615 6.5246 3 0 Median 2.6918 4.0714 15.734 2 0 Median 125760000 68003000 57756000 96637000 59309000 37328000 29122000 8693900 20428000 7355 1507 7515 26794;26795;26796;26797;26798;26799 40474;40475;40476;40477;40478;40479;40480;40481;40482;40483;40484 40476 11 LLDAVDTYIPVPAR LEGRDPELGLKSVQKLLDAVDTYIPVPARD KLLDAVDTYIPVPARDLEKPFLLPVEAVYS K L L A R D 2 1 0 2 0 0 0 0 0 1 2 0 0 0 2 0 1 0 1 2 0 0 14 0 1541.8453 P49411 P49411 239 252 TUFM Elongation factor Tu, mitochondrial yes yes 2 3.1933E-27 186.74 4 2 0.4828 0.65623 137.78 6 Median 0.45526 0.62047 7.1824 4 0 Median 5.8666 8.9416 1.3243 2 0 Median 188520000 109300000 79219000 150930000 103900000 47028000 37593000 5402000 32191000 7356 1350 7516 26800;26801;26802;26803;26804;26805 40485;40486;40487;40488;40489;40490;40491;40492;40493;40494;40495 40487 11 LLDCGNELLQQR HICKLIDTIPDDKLKLLDCGNELLQQRNIR KLKLLDCGNELLQQRNIRRKLLTEVDFNKS K L L Q R N 0 1 1 1 1 2 1 1 0 0 4 0 0 0 0 0 0 0 0 0 0 0 12 0 1457.7297 H0YNU5;B2RAN0;P54132;B7ZKN7;Q3B7X0 H0YNU5 393 404 BLM Bloom syndrome protein yes no 2 1.8449E-07 136.63 5 0.78689 1.1152 18.786 3 Median 0.78689 1.1152 18.786 3 0 Median NaN NaN NaN 0 0 Median 15221000 7614600 7605900 15221000 7614600 7605900 0 0 0 7357 725 7517 26806;26807;26808;26809;26810 40496;40497;40498;40499;40500;40501;40502;40503;40504 40497 9 LLDEDEIR LCCYLKRESVELALKLLDEDEIRGYKLHVE SVELALKLLDEDEIRGYKLHVEVAKFQLKG K L L I R G 0 1 0 2 0 0 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 8 0 1001.5029 O43719;B4DRS4;Q5H919;Q5H918 O43719 200 207 HTATSF1 HIV Tat-specific factor 1 yes no 2 0.02248 55.531 1 0.65775 0.85868 NaN 1 Median 0.65775 0.85868 NaN 1 0 Median NaN NaN NaN 0 0 Median 7631100 4654900 2976200 7631100 4654900 2976200 0 0 0 7358 1187 7518 26811 40505 40505 1 LLDESESAASSR KKYNLHPGVTDYMDRLLDESESAASSRAPS MDRLLDESESAASSRAPSPPPTASNSSNSQ R L L S R A 2 1 0 1 0 0 2 0 0 0 2 0 0 0 0 4 0 0 0 0 0 0 12 0 1263.5943 Q8N108 Q8N108 363 374 MIER1 Mesoderm induction early response protein 1 yes yes 2 0.0018876 84.687 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9542100 9542100 0 0 0 0 9542100 9542100 0 7359 1633 7519 26812;26813 40506;40507 40506 2 LLDLQAK LLTKKENVKPFRVRKLLDLQAKMGMQPHLQ VKPFRVRKLLDLQAKMGMQPHLQALLSLYK K L L A K M 1 0 0 1 0 1 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 799.48035 B4DZL4;A0A024RCG4;Q92674 B4DZL4 222 228 FSHPRH1;CENPI Centromere protein I yes no 2 0.048171 80.462 1 0.63789 0.826 NaN 1 Median 0.63789 0.826 NaN 1 0 Median NaN NaN NaN 0 0 Median 3337700 2099900 1237900 3337700 2099900 1237900 0 0 0 7360 294 7520 26814 40508 40508 1 LLDLVQQSCNYK NPKAYPLADAHLTKKLLDLVQQSCNYKQLR TKKLLDLVQQSCNYKQLRKGANEATKTLNR K L L Y K Q 0 0 1 1 1 2 0 0 0 0 3 1 0 0 0 1 0 0 1 1 0 0 12 0 1479.7392 Q6FHM6;B1AHD1;P55769 Q6FHM6 22 33 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes no 2 6.8489E-55 242.35 6 2 0.72405 0.95329 21.685 7 Median 0.72664 0.96044 5.736 5 0 Median 0.40055 0.63642 0.12082 2 0 Median 861880000 525930000 335950000 702040000 413660000 288380000 159840000 112270000 47570000 7361 670 7521 26815;26816;26817;26818;26819;26820;26821;26822 40509;40510;40511;40512;40513;40514;40515;40516;40517;40518;40519;40520;40521;40522;40523;40524;40525;40526 40516 18 LLDLVVQPVPR FFGTPISKASQKISRLLDLVVQPVPRPSQC KISRLLDLVVQPVPRPSQCSEFIQQSSMKS R L L P R P 0 1 0 1 0 1 0 0 0 0 3 0 0 0 2 0 0 0 0 3 0 0 11 0 1247.7602 Q8WYP5;B3KVE5 Q8WYP5 1117 1127 AHCTF1 Protein ELYS yes no 2 5.8777E-07 128.36 4 2 0.75683 1.0176 9.452 6 Median 0.77015 1.0355 7.7288 4 0 Median 0.59391 0.9364 6.8632 2 0 Median 115880000 68664000 47217000 50179000 28148000 22031000 65702000 40516000 25186000 7362 1670 7522 26823;26824;26825;26826;26827;26828 40527;40528;40529;40530;40531;40532;40533;40534;40535;40536;40537 40531 11 LLDPANR AAAPRRPFSWEDVDRLLDPANRAHLGLEEQ FSWEDVDRLLDPANRAHLGLEEQLRELLDM R L L N R A 1 1 1 1 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 7 0 797.43955 Q86X06;A0A024R4V5;B4E3L9;A0A024R4W4;O95696;B7Z926;Q9Y4Q3;J3KQ61;Q59G93;B4DZC2;B4DZ41 Q86X06 703 709 BRD1;DKFZp434B094 Bromodomain-containing protein 1 yes no 2 0.021626 67.035 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3058700 3058700 0 3058700 3058700 0 0 0 0 7363 128 7523 26829 40538 40538 1 LLDPEDISVDHPDEK QNAFNLAEQHLGLTKLLDPEDISVDHPDEK LLDPEDISVDHPDEKSIITYVVTYYHYFSK K L L E K S 0 0 0 4 0 0 2 0 1 1 2 1 0 0 2 1 0 0 0 1 0 0 15 0 1720.8156 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;F8W6C1 B2ZZ89 250 264 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 0.025081 34.382 2 0.89457 1.1269 0.83069 2 Median 0.89457 1.1269 0.83069 2 0 Median NaN NaN NaN 0 0 Median 40632000 22251000 18381000 40632000 22251000 18381000 0 0 0 7364 346 7524 26830;26831 40539;40540 40540 2 LLDPEDVDVPQPDEK DQAFSVAERDLGVTRLLDPEDVDVPQPDEK LLDPEDVDVPQPDEKSIITYVSSLYDAMPR R L L E K S 0 0 0 4 0 1 2 0 0 0 2 1 0 0 3 0 0 0 0 2 0 0 15 0 1707.8203 Q15149;E9PMV1 Q15149 372 386 PLEC Plectin yes no 2 2.1549E-10 148.13 4 1 0.9503 1.2054 1.0779 3 Median 0.9503 1.2054 1.0779 3 0 Median NaN NaN NaN 0 0 Median 49794000 26948000 22846000 47304000 26948000 20357000 2489400 0 2489400 7365 1507 7525 26832;26833;26834;26835;26836 40541;40542;40543;40544;40545;40546;40547 40545 7 LLDRNQDETEDTELQGMNEYLSSFK EDSSVIHYDDKAIERLLDRNQDETEDTELQ DTELQGMNEYLSSFKVAQYVVREEEMGEEE R L L F K V 0 1 2 3 0 2 4 1 0 0 4 1 1 1 0 2 2 0 1 0 0 0 25 1 2974.3502 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 1231 1255 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 1.0727E-11 107.98 4 1.1355 1.5348 24.211 3 Median 1.1355 1.5348 24.211 3 0 Median NaN NaN NaN 0 0 Median 21492000 9830700 11662000 21492000 9830700 11662000 0 0 0 7366 428 7526;7527 26837;26838;26839;26840 40548;40549;40550;40551;40552;40553 40551 6 LLDSVPPTAISHFK SATEIIKASSKDAIRLLDSVPPTAISHFKQ RLLDSVPPTAISHFKQSAEKLIEEKGAVEA R L L F K Q 1 0 0 1 0 0 0 0 1 1 2 1 0 1 2 2 1 0 0 1 0 0 14 0 1523.8348 Q9NR30 Q9NR30 582 595 DDX21 Nucleolar RNA helicase 2 yes yes 3 0.0005865 77.204 5 2 0.68894 0.87784 5.0613 7 Median 0.69172 0.87784 3.8898 5 0 Median 0.53611 0.85182 9.5074 2 0 Median 252270000 145630000 106640000 169750000 97457000 72290000 82524000 48176000 34348000 7367 1756 7528 26841;26842;26843;26844;26845;26846;26847 40554;40555;40556;40557;40558;40559;40560;40561;40562;40563;40564;40565 40560 12 LLDTAFDLDVFK PATGNKKTHLTELQRLLDTAFDLDVFKNFS LQRLLDTAFDLDVFKNFS____________ R L L F K N 1 0 0 3 0 0 0 0 0 0 3 1 0 2 0 0 1 0 0 1 0 0 12 0 1395.7286 B4DF00;E9PDF2;E9PCR7;Q02218;B4DZ95;B4E3E9;E9PFG7;B4DK55 B4DF00 960 971 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 2 0.0084877 108.43 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2193000 2193000 0 2193000 2193000 0 0 0 0 7368 800 7529 26848 40566 40566 1 LLDTNPEINQSDSQDSR LFYVTAFDRDRAMQRLLDTNPEINQSDSQD DTNPEINQSDSQDSRVAPRLDRKKRTVNRE R L L S R V 0 1 2 3 0 2 1 0 0 1 2 0 0 0 1 3 1 0 0 0 0 0 17 0 1930.8868 Q14669 Q14669 1565 1581 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 2 0.007266 31.656 1 0.59032 0.75013 NaN 1 Median NaN NaN NaN 0 0 Median 0.59032 0.75013 NaN 1 0 Median 4687500 2770900 1916600 0 0 0 4687500 2770900 1916600 7369 1489 7530 26849 40567;40568 40567 2 LLDVDNR SYMLPPLFLEPGDLRLLDVDNRVVLPIEAP FLEPGDLRLLDVDNRVVLPIEAPIRMMITS R L L N R V 0 1 1 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 843.44503 A0A0E3JSF1;A0A0E3JG40;D3WYY8;Q14XT3;X2D546;X2D544;X2D537;X2D4V5;X2D4V3;X2D4U5;X2D4U2;X2D4K6;X2D4F2;X2D4E2;X2D4D6;X2D3Z8;X2D3Z7;X2D3Z6;K7WG81;H9E7F7;A0A059QM31;H9E7P8;A0A059RTG7;A0A059QNV4;E2DTL8;A0A1B1PEQ8;H9E7W2;G3CA49;K7WVJ5;H9E7T7;X5C6M5;X5BKA4;X2CK15;X2C841;W8DFH5;W8DBX9;W8D4U9;W8D1X2;V9K571;V9JPM6;V9JD22;V9J3S1;U5Z9R9;U5Z487;U3LSI8;U3L556;T1SWS8;T1Q632;S4STI1;R9Y478;R9Y412;Q9B2U8;Q9B138;Q8WCW3;Q8HNR6;Q8HNR1;Q85KS0;Q7YEH2;Q7YCE6;Q7Y6N0;Q7Y6M3;Q7Y626;Q6VJJ3;Q6VJD8;Q6VIG7;Q6RQ80;Q6RNN7;Q6RKW8;Q6R0V6;Q5XRW8;Q5SB08;Q5SAP1;Q5SA98;Q5S971;Q4GW12;Q4GVP5;Q4GQP0;Q4GHE1;Q4GCZ4;Q4GCG2;Q4GCC3;Q4F4V6;Q4EZD4;Q305H0;Q19MP7;Q15HH9;Q0Z7S0;Q0Z7K3;Q0Z7J0;Q0Z7F1;Q0Z7D8;Q09U41;Q06TE6;N0BMC4;L7XQ86;L7XMG0;L7NVC9;K9M370;K7X9X2;J7HPF9;J7FG21;I6UIH6;I6PZI4;I6PRP7;I6N6Q6;I3Q4M2;I3PYD8;I2E7Z7;H9T3W9;H9SA70;H9S868;H9S5Y2;H9S054;H9RV93;H9RKS9;H9RJL3;H9RF01;H9RD12;H9RAX1;H9RA87;H9QLC8;H9QH59;H9Q9T5;H9PWQ9;H9PMX8;H9PDV6;H9MK30;H9M675;H9LMC2;H9E7D1;G9LKX8;G9LHJ5;G9LG51;G9LB98;G8JF18;G8JE99;G5D8Q5;G5D8N2;G5D8K6;G5D8J3;G5D8C8;G5D863;G4W3U1;G4W3M6;F2WJ84;F2WI31;F2WGV2;F1CIN6;F1AZF2;F1AZ87;E9P659;E7E4E0;E7CNQ9;E7CM18;E5FWC0;E5EWR3;E5EWL4;E5EWG2;E5E1V1;E5E1A6;E5E079;E5DZN4;E2JFC4;E0AF97;D2IKF4;D1G421;C8YBL1;C8Y3Q5;C8Y3G4;C8XWJ6;C5H6M8;C5H6M7;C5H6M5;C5H6M4;C5H6M3;C5H6L3;C5H6K7;C5H6K6;C5H6K5;B5M7M0;B3GUF3;B3DE06;B2XP28;B2XL43;B2XIR3;B2XHT9;B2WRY8;B2CB37;B1W855;A7LFA2;A7LF11;A6ZHA9;A6ZFK3;A6ZF47;A6ZEU4;A6Z3M5;A1Z455;A0SA07;A0S3T1;A0S2P1;A0A1S6N0P5;A0A1S6M799;A0A1L7NY43;A0A1L1ZJP0;A0A1J0QNY7;A0A1J0QL53;A0A1J0PNZ2;A0A1I9S095;A0A1B1PEN9;A0A1B0W3A7;A0A1B0W1P0;A0A1B0W0T5;A0A1B0VYS2;A0A143G082;A0A143FZ56;A0A0R6NEC0;A0A0P0C1B5;A0A0N6YNR7;A0A0D4WSL8;A0A0D4WR75;A0A0D4WQL7;A0A0D3MLN1;A0A0B5E697;A0A097Q0T5;A0A097PWY7;A0A097PWR7;A0A068IXK4;A0A068BY99;A0A059SAH5;A0A059S8A4;A0A059S2S6;A0A059S242;A0A059RZV1;A0A059RX67;A0A059RVU8;A0A059RUP9;A0A059RTZ6;A0A059RSL1;A0A059RRR2;A0A059RRG1;A0A059RR09;A0A059RQT0;A0A059RQQ2;A0A059RQI1;A0A059RQ10;A0A059RPV8;A0A059RP05;A0A059RNV8;A0A059RNF8;A0A059RMK0;A0A059RLH3;A0A059RKX5;A0A059RKP1;A0A059RJF0;A0A059RIZ2;A0A059RIQ8;A0A059RI85;A0A059RI53;A0A059RHY7;A0A059RHR2;A0A059RFY4;A0A059R1T0;A0A059QVH0;A0A059QTW9;A0A059QS59;A0A059QQA7;A0A059QPY9;A0A059QPU3;A0A059QPT6;A0A059QPR4;A0A059QPE9;A0A059QPE7;A0A059QLX8;A0A059QI72;A0A023QZ25;A0A1B0W1E4;A0A059RUZ1;H9STE0;P00403;X2D4T8;A0A1B0W2I6;H9E7B8;H9E779;A0A1B1PEM6;V5N5I3;S4UQ76;Q9B1F9;Q8HQB7;Q4F6A2;Q4EYL1;L7YNE0;H9T056;H9SYF8;H9RJM6;G9LAZ4;G9C8L9;E9LAG1;E2JJS5;D7NUN3;D5M8T1;D4IH20;D3YPT7;D2K1G3;C9D661;C7BWV1;B4F438;B2XPS3;B2XHF9;B0Z6W4;A7LDC6;A6Z6E8;A6YXV0;A4ZKZ0;A1Z4V2;A0S0W7;A0A1L1ZCG1;A0A1B0WUR8;A0A141ZQJ3;A0A141ZQA2;A0A0E3D6T2;A0A097QC07;A0A097PYA5;A0A097PX98;A0A068BTX8;A0A068BST3;A0A068BP29;A0A059RMS5;A0A023QRX9;A0A023QCZ2 A0A0E3JSF1 135 141 cox2;COX2;COII;MT-CO2 Cytochrome c oxidase subunit 2 yes no 2 0.015121 105.2 3 1 0.62587 0.83923 11.454 3 Median 0.62587 0.83923 11.454 3 0 Median NaN NaN NaN 0 0 Median 95351000 53768000 41582000 89450000 53768000 35681000 5901100 0 5901100 7370 437 7531 26850;26851;26852;26853 40569;40570;40571;40572 40570 4 LLDVLSGHEGPISGLCFNPMK QDSFEIFVWSMQTGRLLDVLSGHEGPISGL GHEGPISGLCFNPMKSVLASASWDKTVRLW R L L M K S 0 0 1 1 1 0 1 3 1 1 4 1 1 1 2 2 0 0 0 1 0 0 21 0 2283.1392 Q15269;A0A0B4J2E5;Q59FM2 Q15269 493 513 PWP2 Periodic tryptophan protein 2 homolog yes no 3 9.8241E-08 58.024 1 0.43249 0.64867 NaN 1 Median NaN NaN NaN 0 0 Median 0.43249 0.64867 NaN 1 0 Median 12753000 8459800 4292800 0 0 0 12753000 8459800 4292800 7371 1508 7532 26854 40573 40573 692 1 LLDYTEK KNKPGEIAKYMETVKLLDYTEKPLYENLRD AKYMETVKLLDYTEKPLYENLRDILLQGLK K L L E K P 0 0 0 1 0 0 1 0 0 0 2 1 0 0 0 0 1 0 1 0 0 0 7 0 880.4542 A8K245;Q99986;H0YJ50;H0YJJ9 A8K245 308 314 VRK1 Serine/threonine-protein kinase VRK1 yes no 2 0.012047 114.72 4 1.0456 1.3404 11.344 2 Median 1.0456 1.3404 11.344 2 0 Median NaN NaN NaN 0 0 Median 24962000 15540000 9421500 24962000 15540000 9421500 0 0 0 7372 582 7533 26855;26856;26857;26858 40574;40575;40576;40577 40574 4 LLEAAAQSTK DALDRSMVEEGTGLRLLEAAAQSTKGYYSP GTGLRLLEAAAQSTKGYYSPYSVSGSGSTA R L L T K G 3 0 0 0 0 1 1 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 10 0 1030.5659 Q15149;D3DWL0;Q96IE3 Q15149 4600 4609 PLEC;PLEC1 Plectin yes no 2 7.0534E-13 116.52 2 0.59876 0.75662 NaN 1 Median 0.59876 0.75662 NaN 1 0 Median NaN NaN NaN 0 0 Median 12567000 7892600 4674900 12567000 7892600 4674900 0 0 0 7373 1507 7534 26859;26860 40578;40579 40579 2 LLEAETQR RRYRQREVTLGQVAKLLEAETQRQADIMLP TLGQVAKLLEAETQRQADIMLPALRSRVTV K L L Q R Q 1 1 0 0 0 1 2 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 8 0 958.50836 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 867 874 EPPK1 Epiplakin no no 2 0.012076 69.198 1 0.54897 0.75855 NaN 1 Median 0.54897 0.75855 NaN 1 0 Median NaN NaN NaN 0 0 Median 4660600 3322700 1337800 4660600 3322700 1337800 0 0 0 7374 373;1386 7535 26861 40580 40580 1 LLEAFHNQGPVIK KKHQRTLMPEKLSHKLLEAFHNQGPVIKRK HKLLEAFHNQGPVIKRKHDLHKMAEANRAL K L L I K R 1 0 1 0 0 1 1 1 1 1 2 1 0 1 1 0 0 0 0 1 0 0 13 0 1464.8089 A0A024R8L0;J3QLS3;Q9Y2R9;J3QQS1;J3KSI8 A0A024R8L0 209 221 MRPS7 28S ribosomal protein S7, mitochondrial yes no 3 0.04637 43.501 1 0.68544 0.90834 NaN 1 Median 0.68544 0.90834 NaN 1 0 Median NaN NaN NaN 0 0 Median 2837000 1628000 1209000 2837000 1628000 1209000 0 0 0 7375 199 7536 26862 40581 40581 1 LLEAISSLDGK SEDEGDNDGERKHQKLLEAISSLDGKNRRK KHQKLLEAISSLDGKNRRKLAERSEASLKV K L L G K N 1 0 0 1 0 0 1 1 0 1 3 1 0 0 0 2 0 0 0 0 0 0 11 0 1144.634 Q9BVJ6;O60531 Q9BVJ6 46 56 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 3.326E-08 125.97 3 2 0.95529 1.2418 8.5773 5 Median 1.0909 1.3654 7.6511 3 0 Median 0.7901 1.188 6.2689 2 0 Median 90992000 45258000 45734000 53888000 24783000 29105000 37104000 20475000 16629000 7376 1719 7537 26863;26864;26865;26866;26867 40582;40583;40584;40585;40586;40587;40588;40589 40584 8 LLEAQACTGGIIDPSTGER EAMHRNLVDNITGQRLLEAQACTGGIIDPS QACTGGIIDPSTGERFPVTDAVNKGLVDKI R L L E R F 2 1 0 1 1 1 2 3 0 2 2 0 0 0 1 1 2 0 0 0 0 0 19 0 1986.9681 Q15149;D3DWL0;Q96IE3 Q15149 4448 4466 PLEC;PLEC1 Plectin yes no 2 3.5233E-09 97.551 5 0.55458 0.76825 2.276 2 Median 0.55458 0.76825 2.276 2 0 Median NaN NaN NaN 0 0 Median 11035000 8928800 2105700 11035000 8928800 2105700 0 0 0 7377 1507 7538 26868;26869;26870;26871;26872 40590;40591;40592;40593;40594;40595;40596 40595 7 LLEAQACTGGIIDPSTGERFPVTDAVNK EAMHRNLVDNITGQRLLEAQACTGGIIDPS PSTGERFPVTDAVNKGLVDKIMVDRINLAQ R L L N K G 3 1 1 2 1 1 2 3 0 2 2 1 0 1 2 1 3 0 0 2 0 0 28 1 2958.4757 Q15149;D3DWL0;Q96IE3 Q15149 4448 4475 PLEC;PLEC1 Plectin yes no 3 1.09E-43 121.23 4 0.57322 0.75909 5.7668 4 Median 0.57322 0.75909 5.7668 4 0 Median NaN NaN NaN 0 0 Median 165260000 99574000 65684000 165260000 99574000 65684000 0 0 0 7378 1507 7539 26873;26874;26875;26876 40597;40598;40599;40600;40601;40602;40603;40604;40605;40606 40604 10 LLEAQACTGGIIHPTTGQK EGIERGIVDSITGQRLLEAQACTGGIIHPT QACTGGIIHPTTGQKLSLQDAVSQGVIDQD R L L Q K L 2 0 0 0 1 2 1 3 1 2 2 1 0 0 1 0 3 0 0 0 0 0 19 0 1994.0255 P15924;Q4LE79 P15924 2650 2668 DSP;DSP variant protein Desmoplakin yes no 3 1.0749E-09 90.654 2 0.29959 0.37753 15.548 2 Median 0.29959 0.37753 15.548 2 0 Median NaN NaN NaN 0 0 Median 15067000 10446000 4620200 15067000 10446000 4620200 0 0 0 7379 1270 7540 26877;26878 40607;40608 40608 2 LLEAQIASGGVVDPVNSVFLPK EAIKKNLIDRETGMRLLEAQIASGGVVDPV SGGVVDPVNSVFLPKDVALARGLIDRDLYR R L L P K D 2 0 1 1 0 1 1 2 0 1 3 1 0 1 2 2 0 0 0 4 0 0 22 0 2252.2416 P15924;Q4LE79 P15924 2124 2145 DSP;DSP variant protein Desmoplakin yes no 2 8.906E-23 106.36 4 0.43704 0.5371 9.4363 3 Median 0.43704 0.5371 9.4363 3 0 Median NaN NaN NaN 0 0 Median 13109000 9421700 3687500 13109000 9421700 3687500 0 0 0 7380 1270 7541 26879;26880;26881;26882 40609;40610;40611;40612;40613 40613 5 LLEAQIATGGIIDPEESHRLPVEVAYK QAMKKGLILKDHGIRLLEAQIATGGIIDPE DPEESHRLPVEVAYKRGLFDEEMNEILTDP R L L Y K R 3 1 0 1 0 1 4 2 1 3 3 1 0 0 2 1 1 0 1 2 0 0 27 1 2947.5655 Q15149;D3DWL0;Q96IE3 Q15149 4179 4205 PLEC;PLEC1 Plectin yes no 4 0.047399 11.417 1 0.5977 0.77755 NaN 1 Median 0.5977 0.77755 NaN 1 0 Median NaN NaN NaN 0 0 Median 42072000 26666000 15405000 42072000 26666000 15405000 0 0 0 7381 1507 7542 26883 40614 40614 1 LLEAQIATGGIIDPVHSHR QAMQKGLVLRQHGIRLLEAQIATGGIIDPV QIATGGIIDPVHSHRVPVDVAYQRGYFSEE R L L H R V 2 1 0 1 0 1 1 2 2 3 2 0 0 0 1 1 1 0 0 1 0 0 19 0 2026.096 Q15149;D3DWL0;P58107;A0A087X1U6;A0A075B730 Q15149 3601 3619 PLEC;PLEC1;EPPK1 Plectin;Epiplakin no no 4 0.0016685 55.437 2 0.6464 0.87567 3.7278 2 Median 0.6464 0.87567 3.7278 2 0 Median NaN NaN NaN 0 0 Median 70510000 44172000 26338000 70510000 44172000 26338000 0 0 0 7382 1507;373;1386 7543 26884;26885 40615;40616;40617 40616 3 LLEAQIATGGVIDPVHSHR QAMQKGLIVREHGIRLLEAQIATGGVIDPV QIATGGVIDPVHSHRVPVDVAYRRGYFDEE R L L H R V 2 1 0 1 0 1 1 2 2 2 2 0 0 0 1 1 1 0 0 2 0 0 19 0 2012.0803 Q15149;D3DWL0;P58107;A0A087X1U6;A0A075B730 Q15149 2942 2960 PLEC;PLEC1;EPPK1 Plectin;Epiplakin no no 3;4 0.0036398 54.292 4 0.64314 0.89288 1.8548 4 Median 0.64314 0.89288 1.8548 4 0 Median NaN NaN NaN 0 0 Median 274310000 166470000 107840000 274310000 166470000 107840000 0 0 0 7383 1507;373;1386 7544 26886;26887;26888;26889 40618;40619;40620;40621;40622 40619 5 LLEAQSHFR RWSQLLANSAARKKKLLEAQSHFRKVEDLF AARKKKLLEAQSHFRKVEDLFLTFAKKASA K L L F R K 1 1 0 0 0 1 1 0 1 0 2 0 0 1 0 1 0 0 0 0 0 0 9 0 1099.5774 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16;Q14917;A0A1B0GUH3 Q13813 2079 2087 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2;3 0.023231 53.751 3 0.87335 1.1932 53.032 3 Median 0.87335 1.1932 53.032 3 0 Median NaN NaN NaN 0 0 Median 28704000 14965000 13740000 28704000 14965000 13740000 0 0 0 7384 1476 7545 26890;26891;26892 40623;40624;40625 40624 3 LLEAQVASGFLVDPLNNQR QAVRDGLLPTGLGQRLLEAQVASGFLVDPL QVASGFLVDPLNNQRLSVEDAVKVGLVGRE R L L Q R L 2 1 2 1 0 2 1 1 0 0 4 0 0 1 1 1 0 0 0 2 0 0 19 0 2083.1062 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 1279 1297 EPPK1 Epiplakin no no 2 7.9155E-19 184 4 0.57261 0.77477 15.68 4 Median 0.57261 0.77477 15.68 4 0 Median NaN NaN NaN 0 0 Median 19187000 12445000 6741900 19187000 12445000 6741900 0 0 0 7385 373;1386 7546 26893;26894;26895;26896 40626;40627;40628;40629;40630;40631 40626 6 LLEATELK EVAARMNEVISLWKKLLEATELKGIKLREA VISLWKKLLEATELKGIKLREANQQQQFNR K L L L K G 1 0 0 0 0 0 2 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 8 0 915.5277 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 663 670 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.019112 58.981 1 1.0796 1.3484 NaN 1 Median 1.0796 1.3484 NaN 1 0 Median NaN NaN NaN 0 0 Median 7794300 3672200 4122100 7794300 3672200 4122100 0 0 0 7386 1476 7547 26897 40632 40632 1 LLEDLR AVENHLEQRLHQPQKLLEDLRKTDAQQFRT EQRLHQPQKLLEDLRKTDAQQFRTAMKCLL K L L L R K 0 1 0 1 0 0 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 6 0 757.4334 Q7RTW8 Q7RTW8 106 111 OTOA Otoancorin yes yes 2 0.0020796 138.38 3 0.24567 0.33444 NaN 1 Median 0.24567 0.33444 NaN 1 0 Median NaN NaN NaN 0 0 Median 296870000 279270000 17599000 296870000 279270000 17599000 0 0 0 7387 1612 7548 26898;26899;26900 40633;40634;40635 40634 3 LLEDSALSK GEGTVASWELRVEGRLLEDSALSKYDATKQ LRVEGRLLEDSALSKYDATKQKRKFSSFFK R L L S K Y 1 0 0 1 0 0 1 0 0 0 3 1 0 0 0 2 0 0 0 0 0 0 9 0 974.52843 A0A024R137;A0A024R102;Q96GM5;B4DF50 A0A024R137 339 347 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 2 0.013736 60.59 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1796900 1796900 0 1796900 1796900 0 0 0 0 7388 47 7549 26901 40636;40637 40636 2 LLEEALLR SAGCLASLQQPVGIRLLEEALLRLLPAELP QQPVGIRLLEEALLRLLPAELPAKRVRGKA R L L L R L 1 1 0 0 0 0 2 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 8 0 955.57023 P78527 P78527 2892 2899 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0018191 91.041 4 2 0.57886 0.80602 33.338 4 Median 0.44226 0.60102 7.6463 2 0 Median 0.74537 1.0627 5.2373 2 0 Median 47074000 31858000 15215000 24681000 19403000 5278100 22392000 12455000 9937400 7389 1427 7550 26902;26903;26904;26905;26906;26907 40638;40639;40640;40641;40642;40643;40644;40645 40639 8 LLEEEIQAPTSSK YRIDPNVLLDPADEKLLEEEIQAPTSSKRS EKLLEEEIQAPTSSKRSQQHAKVVPWMRKT K L L S K R 1 0 0 0 0 1 3 0 0 1 2 1 0 0 1 2 1 0 0 0 0 0 13 0 1443.7457 A0A024R0H6;Q8N7H5;B4DGJ5 A0A024R0H6 107 119 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 1.242E-32 209.8 4 0.67896 0.84587 11.344 4 Median 0.67896 0.84587 11.344 4 0 Median NaN NaN NaN 0 0 Median 99619000 58328000 41291000 99619000 58328000 41291000 0 0 0 7390 36 7551 26908;26909;26910;26911 40646;40647;40648;40649;40650;40651;40652;40653;40654 40647 9 LLEENVSAFK EANVLATAPDKKKQKLLEENVSAFKTEYDA KKKQKLLEENVSAFKTEYDAVAEKAGKVEA K L L F K T 1 0 1 0 0 0 2 0 0 0 2 1 0 1 0 1 0 0 0 1 0 0 10 0 1148.6077 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 858 867 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.3827E-07 146.81 4 2 0.68287 0.97768 10.617 6 Median 0.71076 0.9185 8.7762 4 0 Median 0.67223 1.0648 1.2697 2 0 Median 647810000 387480000 260340000 466290000 275820000 190470000 181520000 111650000 69868000 7391 1760 7552 26912;26913;26914;26915;26916;26917 40655;40656;40657;40658;40659;40660;40661;40662;40663;40664;40665;40666 40660 12 LLEFQLALK KDAKLYSNRAACYTKLLEFQLALKDCEECI AACYTKLLEFQLALKDCEECIQLEPTFIKG K L L L K D 1 0 0 0 0 1 1 0 0 0 4 1 0 1 0 0 0 0 0 0 0 0 9 0 1073.6485 V9HW72;A8K690;P31948;H0YGI8 V9HW72 407 415 HEL-S-94n;STIP1 Stress-induced-phosphoprotein 1 yes no 2 0.043067 68.787 1 0.52322 0.69239 NaN 1 Median 0.52322 0.69239 NaN 1 0 Median NaN NaN NaN 0 0 Median 2339300 1435500 903800 2339300 1435500 903800 0 0 0 7392 622 7553 26918 40667 40667 1 LLEGEDAHLSSQQASGQSYSSR DVKTRLEQEIATYRRLLEGEDAHLSSQQAS HLSSQQASGQSYSSREVFTSSSSSSSRQTR R L L S R E 2 1 0 1 0 3 2 2 1 0 3 0 0 0 0 6 0 0 1 0 0 0 22 0 2349.0833 CON__P08779;P08779 CON__P08779 420 441 KRT16 Keratin, type I cytoskeletal 16 yes no 3 3.0033E-15 93.006 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21091000 21091000 0 7922800 7922800 0 13168000 13168000 0 + 7393 958 7554 26919;26920;26921;26922 40668;40669;40670;40671;40672 40672 5 LLEGEDAHLSSSQFSSGSQSSR DVKTRLEQEIATYRRLLEGEDAHLSSSQFS HLSSSQFSSGSQSSRDVTSSSRQIRTKVMD R L L S R D 1 1 0 1 0 2 2 2 1 0 3 0 0 1 0 8 0 0 0 0 0 0 22 0 2308.0567 CON__P02533;P02533;A0A024R1X6;Q13092;CON__Q61782 CON__P02533 418 439 KRT14;K14 Keratin, type I cytoskeletal 14 yes no 3 6.8174E-07 103.31 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41619000 41619000 0 17072000 17072000 0 24547000 24547000 0 + 7394 949 7555 26923;26924;26925 40673;40674;40675;40676 40673 4 LLEGEDAHLTQYK DVKTRLEQEIATYRRLLEGEDAHLTQYKKE RRLLEGEDAHLTQYKKEPVTTRQVRTIVEE R L L Y K K 1 0 0 1 0 1 2 1 1 0 3 1 0 0 0 0 1 0 1 0 0 0 13 0 1515.7569 CON__Q04695;Q04695;F5GWP8;CON__Q9QWL7;Q14666 CON__Q04695 387 399 KRT17 Keratin, type I cytoskeletal 17 yes no 3 0.018626 25.982 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4428100 4428100 0 4428100 4428100 0 0 0 0 + 7395 965 7556 26926 40677 40677 1 LLEGEECR NVKLALDVEIATYRKLLEGEECRLYGEGVG EIATYRKLLEGEECRLYGEGVGQVNISVLQ K L L C R L 0 1 0 0 1 0 3 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 1004.4597 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DRY0;CON__P07744;H0YIC5;CON__P04259;B4DKV4;CON__P13647;P13647;B4E1T1;B4DL32;H0YI76;CON__O95678;O95678;CON__P35908;P35908;Q01546;CON__Q01546;B4DQ49;CON__Q8N1N4-2;CON__Q7RTT2;Q8N1N4 B4DRR0 439 446 KRT6A;KRT6C;KRT73;KRT5;KRT75;KRT2;KRT76;KRT78 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 78 no no 2 0.0019279 85.064 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43505000 43505000 0 20268000 20268000 0 23237000 23237000 0 + 7396 459;953;964;961;946;849 7557 26927;26928 40678;40679 40678 2 LLEGEEER DIKLALDMEIHAYRKLLEGEEERLRLSPSP EIHAYRKLLEGEEERLRLSPSPTSQRSRGR K L L E R L 0 1 0 0 0 0 4 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 973.47164 P20700;E9PBF6;B4DZT3;Q03252;A0A0A7M1X5;P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;Q5TCI8;B4DFR3;A0A0C4DGC5 P02545 379 386 LMNB1;LMNB2;LMNA Lamin-B1;Lamin-B2;Prelamin-A/C;Lamin-A/C no no 2 0.002365 109.01 2 1 0.97642 1.4407 81.552 2 Median 0.58974 0.80936 NaN 1 0 Median 1.6166 2.5646 NaN 1 0 Median 157950000 87077000 70877000 112800000 70625000 42177000 45153000 16452000 28701000 7397 1229;1285;1440 7558 26929;26930;26931 40680;40681;40682;40683;40684 40681 5 LLEIITTTIEETETQNQGIK ELIQEYGAQSGGLEKLLEIITTTIEETETQ TTTIEETETQNQGIKVAAIRGEVTAADLFN K L L I K V 0 0 1 0 0 2 4 1 0 4 2 1 0 0 0 0 5 0 0 0 0 0 20 0 2273.2002 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 1827 1846 EPPK1 Epiplakin no no 2 6.3756E-25 162.93 3 0.78042 0.95593 45.407 3 Median 0.78042 0.95593 45.407 3 0 Median NaN NaN NaN 0 0 Median 6678800 3200100 3478600 6678800 3200100 3478600 0 0 0 7398 373;1386 7559 26932;26933;26934 40685;40686;40687 40685 2 LLEIQGK PTTGDAGGREPMEEKLLEIQGKIEAVEMHL GREPMEEKLLEIQGKIEAVEMHLTREHMKR K L L G K I 0 0 0 0 0 1 1 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 799.48035 Q9UKN8 Q9UKN8 669 675 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 2 0.012796 84.359 3 0.75002 0.95695 26.38 2 Median 0.75002 0.95695 26.38 2 0 Median NaN NaN NaN 0 0 Median 20839000 14223000 6615700 20839000 14223000 6615700 0 0 0 7399 1789 7560 26935;26936;26937 40688;40689;40690 40689 3 LLEIQTEK IRKKRLQLKQASESKLLEIQTEKNKQKIDL KQASESKLLEIQTEKNKQKIDLDSMENSER K L L E K N 0 0 0 0 0 1 2 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 8 0 972.54916 B3KVZ3;A0A0S2Z5T0;Q9H3R5;H0Y9E6 B3KVZ3 153 160 CENPH Centromere protein H yes no 2 0.02509 54.157 1 0.53328 0.75362 NaN 1 Median NaN NaN NaN 0 0 Median 0.53328 0.75362 NaN 1 0 Median 6108300 4265000 1843300 0 0 0 6108300 4265000 1843300 7400 482 7561 26938 40691 40691 1 LLEIVSYK KKAVELGEKASGKLRLLEIVSYKIIGVHQE KASGKLRLLEIVSYKIIGVHQEDELLECLS R L L Y K I 0 0 0 0 0 0 1 0 0 1 2 1 0 0 0 1 0 0 1 1 0 0 8 0 963.56408 Q6U8A4;Q93009;B7ZAX6;B7Z855;H3BND8 Q6U8A4 951 958 USP7 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 7 yes no 2 0.033457 49.097 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2725700 2725700 0 2725700 2725700 0 0 0 0 7401 1600 7562 26939 40692 40692 1 LLELADIDPTLRPR RMLFPEAQRLESTGRLLELADIDPTLRPRQ RLLELADIDPTLRPRQLSISHFKSLCDVYR R L L P R Q 1 2 0 2 0 0 1 0 0 1 4 0 0 0 2 0 1 0 0 0 0 0 14 1 1620.9199 E5KTM5;A8K0B9;Q8WVM0 E5KTM5 280 293 TFB1M Dimethyladenosine transferase 1, mitochondrial yes no 3 0.004304 50.145 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1554900 1554900 0 1554900 1554900 0 0 0 0 7402 576 7563 26940 40693 40693 1 LLELGPKPEVAQQTR FKLKNFKTAATFARRLLELGPKPEVAQQTR LLELGPKPEVAQQTRKILSACEKNPTDAYQ R L L T R K 1 1 0 0 0 2 2 1 0 0 3 1 0 0 2 0 1 0 0 1 0 0 15 1 1677.9414 P53621 P53621 1128 1142 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 3 8.4973E-05 57.679 1 0.59255 0.7705 NaN 1 Median 0.59255 0.7705 NaN 1 0 Median NaN NaN NaN 0 0 Median 11089000 7370800 3717900 11089000 7370800 3717900 0 0 0 7403 1371 7564 26941 40694;40695 40694 2 LLELLPGK GYAEVVVASENSVHKLLELLPGKVLNGEKV SENSVHKLLELLPGKVLNGEKVDVRPATRQ K L L G K V 0 0 0 0 0 0 1 1 0 0 4 1 0 0 1 0 0 0 0 0 0 0 8 0 881.5586 J3QT54;F5H6M0;F5H047;F5H669;B4DGF8;Q8N684 J3QT54 141 148 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes no 2 0.025222 55.902 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7404 804 7565 26942 40696 40696 1 LLELTSSYSPDVSDYK LLAAAPQVGEKIAFKLLELTSSYSPDVSDY LELTSSYSPDVSDYKEGRILSHNPETQQVD K L L Y K E 0 0 0 2 0 0 1 0 0 0 3 1 0 0 1 4 1 0 2 1 0 0 16 0 1815.8778 P38432 P38432 481 496 COIL Coilin yes yes 2 5.4871E-09 113.99 4 0.65456 0.83309 15.675 4 Median 0.65456 0.83309 15.675 4 0 Median NaN NaN NaN 0 0 Median 11875000 7142600 4732300 11875000 7142600 4732300 0 0 0 7405 1328 7566 26943;26944;26945;26946 40697;40698;40699;40700;40701;40702;40703;40704 40702 8 LLENPTINHQK IEEEFVSLVTGCCYRLLENPTINHQKNRPT CCYRLLENPTINHQKNRPTREAITHLLGVA R L L Q K N 0 0 2 0 0 1 1 0 1 1 2 1 0 0 1 0 1 0 0 0 0 0 11 0 1305.7041 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00;A0PJ76 B3KMS0 205 215 NCAPD2 Condensin complex subunit 1 yes no 2;3 1.7253E-07 127.76 7 7 0.4256 0.64354 23.953 5 Median 0.74833 0.94277 1.7526 2 0 Median 0.4256 0.64354 7.3485 3 0 Plateau 130040000 91290000 38749000 80953000 55302000 25651000 49087000 35988000 13099000 7406 757 7567 26947;26948;26949;26950;26951;26952;26953;26954;26955;26956;26957;26958;26959;26960 40705;40706;40707;40708;40709;40710;40711;40712;40713;40714;40715;40716;40717;40718;40719 40707 15 LLEPVLLLGK GRPLEMIEPRTLQYKLLEPVLLLGKERFAG TLQYKLLEPVLLLGKERFAGVDIRVRVKGG K L L G K E 0 0 0 0 0 0 1 1 0 0 5 1 0 0 1 0 0 0 0 1 0 0 10 0 1093.7111 P62249;M0R210;M0R3H0;A0A087WZ27;M0R1M5;M0QX76;Q6IPX4 P62249 51 60 RPS16;ZNF90 40S ribosomal protein S16 yes no 2 3.2091E-11 148.99 10 2 0.79098 1.0455 17.612 7 Median 0.76239 1.0076 6.0433 5 0 Median 0.89198 1.4105 2.9499 2 0 Median 1614900000 897320000 717550000 1370300000 767500000 602790000 244580000 129820000 114760000 7407 1400 7568 26961;26962;26963;26964;26965;26966;26967;26968;26969;26970;26971;26972 40720;40721;40722;40723;40724;40725;40726;40727;40728;40729;40730;40731;40732;40733;40734;40735;40736;40737;40738;40739;40740;40741;40742;40743;40744;40745 40734 26 LLEQALVIEEQLR NFLEIKNKFLARRFKLLEQALVIEEQLRRA FKLLEQALVIEEQLRRAAYLNMSEDPSHPS K L L L R R 1 1 0 0 0 2 3 0 0 1 4 0 0 0 0 0 0 0 0 1 0 0 13 0 1552.8825 B3KY63;F5GWX5;A0A0C4DGG9;Q14839;Q8TDI0;Q6ZU36;I3L229;H7C3H7;Q12873;B4DLC6;B4DKV1;Q2TAZ1;B3KWV4;H7C0J3 B3KY63 1762 1774 CHD4;CHD5;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 no no 2 1.6967E-12 160.67 5 2 0.71973 0.98028 31.996 7 Median 0.69774 0.93073 5.5277 5 0 Median 1.1496 1.8315 7.4537 2 0 Median 182210000 95905000 86306000 89699000 53611000 36088000 92512000 42294000 50218000 7408 428;1458;1121 7569 26973;26974;26975;26976;26977;26978;26979 40746;40747;40748;40749;40750;40751;40752;40753;40754;40755;40756;40757;40758;40759 40750 13 LLEQALVIEEQLRR NFLEIKNKFLARRFKLLEQALVIEEQLRRA KLLEQALVIEEQLRRAAYLNMSEDPSHPSM K L L R R A 1 2 0 0 0 2 3 0 0 1 4 0 0 0 0 0 0 0 0 1 0 0 14 1 1708.9836 B3KY63;F5GWX5;A0A0C4DGG9;Q14839;Q8TDI0;Q6ZU36;I3L229;H7C3H7;Q12873;B4DLC6;B4DKV1;Q2TAZ1;B3KWV4;H7C0J3 B3KY63 1762 1775 CHD4;CHD5;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 no no 3 3.339E-07 87.18 3 2 0.75943 1.0303 27.751 5 Median 0.74341 1.0209 1.9818 3 0 Median 1.071 1.6821 0.91238 2 0 Median 195950000 103120000 92828000 87753000 51374000 36379000 108200000 51746000 56449000 7409 428;1458;1121 7570 26980;26981;26982;26983;26984 40760;40761;40762;40763;40764;40765;40766;40767 40767 8 LLEQGLR RLLRASGRTPEAVQKLLEQGLRHSQDLAFL RTPEAVQKLLEQGLRHSQDLAFLSMLNDIA K L L L R H 0 1 0 0 0 1 1 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 7 0 827.4865 A0A0U1RQF0;P49327 A0A0U1RQF0 437 443 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.050654 77.748 1 0.664 0.91103 NaN 1 Median 0.664 0.91103 NaN 1 0 Median NaN NaN NaN 0 0 Median 6357800 3673900 2683900 6357800 3673900 2683900 0 0 0 7410 486 7571 26985 40768 40768 1 LLEQQELR PLVSKISEKRKKKLRLLEQQELREKEEEEE KRKKKLRLLEQQELREKEEEEEPEGKPSDA R L L L R E 0 1 0 0 0 2 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 8 0 1027.5662 Q9BSC4;B4DS83 Q9BSC4 523 530 NOL10 Nucleolar protein 10 yes no 2 5.1219E-05 134.06 5 2 0.76965 1.065 11.277 5 Median 0.80608 1.0982 14.309 3 0 Median 0.67253 1.0536 1.5186 2 0 Median 165730000 92600000 73131000 106820000 57682000 49134000 58915000 34918000 23997000 7411 1710 7572 26986;26987;26988;26989;26990;26991;26992 40769;40770;40771;40772;40773;40774;40775;40776;40777;40778;40779 40775 11 LLEQTQIIGEQNAR KVQEQQKQLQDQDQKLLEQTQIIGEQNARL KLLEQTQIIGEQNARLAELERKLREVMESA K L L A R L 1 1 1 0 0 3 2 1 0 2 2 0 0 0 0 0 1 0 0 0 0 0 14 0 1611.858 A0A024R3Q6;Q9NVF7 A0A024R3Q6 303 316 FBXO28 F-box only protein 28 yes no 2 5.717E-14 153.54 4 0.5698 0.81013 4.7399 3 Median 0.5698 0.81013 4.7399 3 0 Median NaN NaN NaN 0 0 Median 9713400 7182900 2530400 9713400 7182900 2530400 0 0 0 7412 103 7573 26993;26994;26995;26996 40780;40781;40782;40783;40784;40785;40786 40783 7 LLEQYK DEITYVELQKEEAQKLLEQYKEESKKALPP ELQKEEAQKLLEQYKEESKKALPPEKKQNT K L L Y K E 0 0 0 0 0 1 1 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 6 0 792.43815 Q96BA7;B3KX72;B4DLR3;Q00839;Q7Z4Q5 Q96BA7 562 567 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 2 0.038125 103.41 1 0.35341 0.44452 NaN 1 Median 0.35341 0.44452 NaN 1 0 Median NaN NaN NaN 0 0 Median 59311000 43263000 16048000 59311000 43263000 16048000 0 0 0 7413 788 7574 26997 40787 40787 1 LLESFETMASQTNLVDLDLGGK AHLNALKMNCYALIRLLESFETMASQTNLV MASQTNLVDLDLGGKGKKARTKAAHGFDWE R L L G K G 1 0 1 2 0 1 2 2 0 0 5 1 1 1 0 2 2 0 0 1 0 0 22 0 2380.1832 B3KMS0;Q15021;B3KY03;B4E0B7;A0PJ76 B3KMS0 127 148 NCAPD2 Condensin complex subunit 1 yes no 2 1.0646E-06 94.728 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46492000 46492000 0 913030 913030 0 45579000 45579000 0 7414 757 7575;7576 26998;26999;27000 40788;40789;40790 40788 270 3 LLESLDQLELR GRFCRSSSMADRSSRLLESLDQLELRVEAL RSSRLLESLDQLELRVEALREAATAVEQEK R L L L R V 0 1 0 1 0 1 2 0 0 0 5 0 0 0 0 1 0 0 0 0 0 0 11 0 1327.7347 B3KN59;B3KM36;O95816 B3KN59 28 38 BAG2 BAG family molecular chaperone regulator 2 yes no 2 1.3157E-44 240.13 4 2 0.60843 0.82425 49.612 6 Median 0.58374 0.7958 4.4994 4 0 Median 1.3307 2.092 0.30153 2 0 Median 215020000 121660000 93364000 149170000 93724000 55448000 65850000 27934000 37916000 7415 751 7577 27001;27002;27003;27004;27005;27006 40791;40792;40793;40794;40795;40796;40797;40798;40799;40800 40792 10 LLETIDQLYLEYAK ALTQKRREALERTEKLLETIDQLYLEYAKR KLLETIDQLYLEYAKRAAPFNNWMEGAMED K L L A K R 1 0 0 1 0 1 2 0 0 1 4 1 0 0 0 0 1 0 2 0 0 0 14 0 1710.908 H9KV75;B7Z565;A0A024R694;P12814;Q86TX4;H0YJ11;H7C5W8;B3KUX9;B4DFY0;B7Z2W3 H9KV75 438 451 ACTN1 Alpha-actinin-1 yes no 2 0.0013039 100.04 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7416 157 7578 27007 40801 40801 1 LLETYLILVK VTKTNCCESSEQIKRLLETYLILVKHGSGT EQIKRLLETYLILVKHGSGTKIPTPADVCK R L L V K H 0 0 0 0 0 0 1 0 0 1 4 1 0 0 0 0 1 0 1 1 0 0 10 0 1203.7479 O75691 O75691 322 331 UTP20 Small subunit processome component 20 homolog yes yes 2 0.00055914 121.05 2 0.95 1.2192 NaN 1 Median 0.95 1.2192 NaN 1 0 Median NaN NaN NaN 0 0 Median 3788300 1794200 1994000 3788300 1794200 1994000 0 0 0 7417 1207 7579 27008;27009 40802;40803 40803 2 LLEVDLK VREKDIQRFFSGYGRLLEVDLKNGYGFVEF RFFSGYGRLLEVDLKNGYGFVEFEDSRDAD R L L L K N 0 0 0 1 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 7 0 828.49567 Q59GY3;V9HVZ0;A8K588;Q13247;B5BU15 Q59GY3 62 68 HEL-S-91;SRSF6;SFRS6 Serine/arginine-rich splicing factor 6 yes no 2 0.0049208 139.92 2 1 0.32893 0.41004 76.328 3 Median 0.31873 0.39094 6.7468 2 0 Median 0.99199 1.4626 NaN 1 0 Median 46917000 32687000 14230000 39632000 28903000 10729000 7284600 3784300 3500300 7418 615 7580 27010;27011;27012 40804;40805;40806 40804 3 LLEVQGSRPGK MSDSEKLNLDSIIGRLLEVQGSRPGKNVQL IIGRLLEVQGSRPGKNVQLTENEIRGLCLK R L L G K N 0 1 0 0 0 1 1 2 0 0 2 1 0 0 1 1 0 0 0 1 0 0 11 1 1182.6721 P62136;E9PMD7 P62136 16 26 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase yes no 2;3 0.0016457 107.15 6 4 0.75499 1.037 12.785 10 Median 0.75499 0.99616 9.9659 6 0 Median 0.72478 1.1315 9.9793 4 0 Median 165930000 91824000 74104000 120700000 65789000 54911000 45227000 26034000 19193000 7419 1396 7581 27013;27014;27015;27016;27017;27018;27019;27020;27021;27022 40807;40808;40809;40810;40811;40812;40813;40814;40815;40816 40808 10 LLEVYDQLFK FVIQTMNEIGVPLPRLLEVYDQLFKSRDPF VPLPRLLEVYDQLFKSRDPFWNRMKKPLHL R L L F K S 0 0 0 1 0 1 1 0 0 0 3 1 0 1 0 0 0 0 1 1 0 0 10 0 1266.686 B4DLT2;A0A024R071;O75694;E9PF10;B3KMK3 B4DLT2 1261 1270 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.0037811 66.27 1 3.2532 4.5625 NaN 1 Median NaN NaN NaN 0 0 Median 3.2532 4.5625 NaN 1 0 Median 4345900 804620 3541300 0 0 0 4345900 804620 3541300 7420 29 7582 27023 40817 40817 1 LLEYLR IAKPEQETRLAATEKLLEYLRGRPKGSEMK ETRLAATEKLLEYLRGRPKGSEMKYALKRL K L L L R G 0 1 0 0 0 0 1 0 0 0 3 0 0 0 0 0 0 0 1 0 0 0 6 0 805.46979 Q9BQG0;B4DZZ1;B4DWP5 Q9BQG0 57 62 MYBBP1A Myb-binding protein 1A yes no 2 0.039376 109.94 1 0.57787 0.79588 NaN 1 Median 0.57787 0.79588 NaN 1 0 Median NaN NaN NaN 0 0 Median 6084300 3122300 2961900 6084300 3122300 2961900 0 0 0 7421 1708 7583 27024 40818 40818 1 LLFDETQGK SATSRNIGVRRIQIKLLFDETQGKPAVAVI RRIQIKLLFDETQGKPAVAVIDNGRGMTSK K L L G K P 0 0 0 1 0 1 1 1 0 0 2 1 0 1 0 0 1 0 0 0 0 0 9 0 1049.5393 A6NHR9 A6NHR9 169 177 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.016011 71.379 2 0.80546 1.0393 3.5771 2 Median 0.80546 1.0393 3.5771 2 0 Median NaN NaN NaN 0 0 Median 6632800 3742800 2890000 6632800 3742800 2890000 0 0 0 7422 568 7584 27025;27026 40819;40820 40820 2 LLFNDVQTLK GEVERDLDKADSMIRLLFNDVQTLKDGRHP DSMIRLLFNDVQTLKDGRHPQGEQMYRRVY R L L L K D 0 0 1 1 0 1 0 0 0 0 3 1 0 1 0 0 1 0 0 1 0 0 10 0 1189.6707 Q15149;E9PMV1 Q15149 588 597 PLEC Plectin yes no 2 0.037295 74.92 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3200000 0 3200000 3200000 0 3200000 0 0 0 7423 1507 7585 27027 40821 40821 1 LLFPAVDDNLLK ASPRYIFTMLSTLARLLFPAVDDNLLKFLY LARLLFPAVDDNLLKFLYDDNQRVEPEWYI R L L L K F 1 0 1 2 0 0 0 0 0 0 4 1 0 1 1 0 0 0 0 1 0 0 12 0 1356.7653 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80 Q71UH4 809 820 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 2.4522E-07 96.89 2 2 0.66547 0.95385 7.0701 4 Median 0.70637 0.90229 1.5672 2 0 Median 0.63939 1.0159 2.6206 2 0 Median 285970000 172280000 113690000 101640000 57509000 44136000 184320000 114770000 69555000 7424 1437 7586 27028;27029;27030;27031 40822;40823;40824;40825;40826;40827;40828;40829 40825 8 LLFPPKDDHTLK ASPRYIFTMLSSLARLLFPPKDDHTLKFLY LARLLFPPKDDHTLKFLYDDNQRVEPEWYI R L L L K F 0 0 0 2 0 0 0 0 1 0 3 2 0 1 2 0 1 0 0 0 0 0 12 1 1422.7871 P11388 P11388 816 827 TOP2A DNA topoisomerase 2-alpha yes yes 3 0.0087373 38.021 1 2 0.76219 1.1156 1.8526 3 Median 0.92793 1.1364 NaN 1 0 Median 0.73935 1.1053 1.3115 2 0 Median 22707000 12199000 10508000 13546000 7047600 6498100 9161200 5151700 4009500 7425 1256 7587 27032;27033;27034 40830;40831;40832;40833 40833 4 LLFSATLTQNPEK VTAASTCCPQMPLQKLLFSATLTQNPEKLQ QKLLFSATLTQNPEKLQQLGLHQPRLFSTG K L L E K L 1 0 1 0 0 1 1 0 0 0 3 1 0 1 1 1 2 0 0 0 0 0 13 0 1460.7875 F1T0L5;Q8N8A6 F1T0L5 428 440 DDX51 ATP-dependent RNA helicase DDX51 yes no 2 0.0085137 50.284 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1217200 1217200 0 1217200 1217200 0 0 0 0 7426 1048 7588 27035 40834 40834 1 LLFSNTAAQK VKKHNGVGGSPPKSKLLFSNTAAQKLRGMD PPKSKLLFSNTAAQKLRGMDEVYNLFYVNN K L L Q K L 2 0 1 0 0 1 0 0 0 0 2 1 0 1 0 1 1 0 0 0 0 0 10 0 1091.5975 Q96ST3 Q96ST3 866 875 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 0.050613 80.219 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7427 1701 7589 27036 40835 40835 1 LLFSSSAAFAK NYNLMNIDINNNELRLLFSSSAAFAKFEIT NELRLLFSSSAAFAKFEITLFLSAYYPSVP R L L A K F 3 0 0 0 0 0 0 0 0 0 2 1 0 2 0 3 0 0 0 0 0 0 11 0 1140.6179 Q8NG31;H0YCZ2 Q8NG31 2267 2277 CASC5 Protein CASC5 yes no 2 0.00018734 85.862 2 1 0.46121 0.58511 15.349 3 Median 0.45719 0.57425 2.6485 2 0 Median 0.53407 0.74766 NaN 1 0 Median 21232000 13342000 7889400 15322000 9412200 5910200 5909300 3930100 1979200 7428 1656 7590 27037;27038;27039 40836;40837;40838;40839;40840 40838 5 LLFTMLEK KFCMISATFCDSQLRLLFTMLEKSPLPIVR FCDSQLRLLFTMLEKSPLPIVRSNLMVATG R L L E K S 0 0 0 0 0 0 1 0 0 0 3 1 1 1 0 0 1 0 0 0 0 0 8 0 993.55689 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1058 1065 NCAPD2 Condensin complex subunit 1 yes no 2 0.014941 104.75 2 3 0.39685 0.5967 16.499 4 Median 0.6628 0.80693 NaN 1 0 Median 0.39685 0.5967 5.3742 3 0 Plateau 62310000 42133000 20177000 3408200 1951500 1456700 58902000 40181000 18721000 7429 757 7591;7592 27040;27041;27042;27043;27044 40841;40842;40843;40844;40845 40842 271 5 LLGAALPLLTK LLKMQFWPASYLCFRLLGAALPLLTKEQLH LCFRLLGAALPLLTKEQLHLVMQGDVIRHY R L L T K E 2 0 0 0 0 0 0 1 0 0 5 1 0 0 1 0 1 0 0 0 0 0 11 0 1108.722 Q9BQG0;I3L1L3;B4DZZ1 Q9BQG0 308 318 MYBBP1A Myb-binding protein 1A yes no 2 7.9765E-07 140.11 4 2 0.70159 0.98328 7.1302 6 Median 0.7442 0.93671 6.953 4 0 Median 0.67316 1.0169 1.003 2 0 Median 134030000 76798000 57229000 99142000 56343000 42798000 34885000 20455000 14430000 7430 1708 7593 27045;27046;27047;27048;27049;27050 40846;40847;40848;40849;40850;40851;40852;40853;40854;40855;40856;40857;40858 40849 13 LLGASELPIVTPALR IGMVVKTGVVPQLVKLLGASELPIVTPALR LLGASELPIVTPALRAIGNIVTGTDEQTQV K L L L R A 2 1 0 0 0 0 1 1 0 1 4 0 0 0 2 1 1 0 0 1 0 0 15 0 1548.9239 Q7Z726;A8K7D9;P52292 Q7Z726 301 315 KPNA2 Importin subunit alpha;Importin subunit alpha-1 yes no 2 2.5918E-33 194.48 4 2 0.48878 0.67485 8.6053 6 Median 0.49527 0.67485 1.2862 4 0 Median 0.39835 0.65201 18.684 2 0 Median 362470000 249830000 112640000 148310000 100410000 47891000 214160000 149410000 64751000 7431 633 7594 27051;27052;27053;27054;27055;27056 40859;40860;40861;40862;40863;40864;40865;40866;40867;40868;40869;40870 40860 12 LLGEEIEYLK PKMLEEFSLVVHHCRLLGEEIEYLKRWGPN VHHCRLLGEEIEYLKRWGPNYNLMNIDINN R L L L K R 0 0 0 0 0 0 3 1 0 1 3 1 0 0 0 0 0 0 1 0 0 0 10 0 1205.6544 Q8NG31;H0YCZ2 Q8NG31 2238 2247 CASC5 Protein CASC5 yes no 2 0.0081161 74.376 2 0.64587 0.84933 NaN 1 Median 0.64587 0.84933 NaN 1 0 Median NaN NaN NaN 0 0 Median 8224900 7208700 1016200 8224900 7208700 1016200 0 0 0 7432 1656 7595 27057;27058 40871;40872 40872 2 LLGGFQETCSK PFRSEVCFGKEGLWKLLGGFQETCSKAIRV GLWKLLGGFQETCSKAIRVGVIGFPNVGKS K L L S K A 0 0 0 0 1 1 1 2 0 0 2 1 0 1 0 1 1 0 0 0 0 0 11 0 1238.5965 A0A024R2Z6;Q9BVP2 A0A024R2Z6 231 241 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 1.8314E-07 121.73 3 2 0.65511 0.8229 12.66 4 Median 0.64214 0.8124 4.5049 3 0 Median 0.74352 1.0227 NaN 1 0 Median 54385000 33619000 20766000 47193000 28729000 18464000 7191600 4889800 2301800 7433 95 7596 27059;27060;27061;27062;27063 40873;40874;40875;40876;40877;40878;40879 40875 6 LLGGLAVR RGLCAIAQAESLRYKLLGGLAVRRACYGVL AESLRYKLLGGLAVRRACYGVLRFIMESGA K L L V R R 1 1 0 0 0 0 0 2 0 0 3 0 0 0 0 0 0 0 0 1 0 0 8 0 797.51232 P23396;Q53G83;E9PL09;F2Z2S8;H0YCJ7;H0YF32;A7E2S3;Q9NQS8 P23396 109 116 RPS3 40S ribosomal protein S3 yes no 2 0.0016074 119.22 4 1 0.71837 0.98255 49.842 4 Median 0.71481 0.97599 0.83762 3 0 Median 1.7161 2.6545 NaN 1 0 Median 413810000 227700000 186110000 388520000 218990000 169520000 25287000 8700600 16586000 7434 1293 7597 27064;27065;27066;27067;27068 40880;40881;40882;40883;40884;40885 40880 6 LLGGQLGLEDFIFAHVK ILYCTLNTPKIDMERLLGGQLGLEDFIFAH GGQLGLEDFIFAHVKGIEKEVNVYKSEDSL R L L V K G 1 0 0 1 0 1 1 3 1 1 4 1 0 2 0 0 0 0 0 1 0 0 17 0 1856.0196 Q8TF65 Q8TF65 96 112 GIPC2 PDZ domain-containing protein GIPC2 yes yes 3 0.0023903 61.186 2 0.30406 0.3847 24.815 2 Median 0.30406 0.3847 24.815 2 0 Median NaN NaN NaN 0 0 Median 6151800 4908000 1243800 6151800 4908000 1243800 0 0 0 7435 1662 7598 27069;27070 40886;40887 40886 2 LLGGVTIAQGGVLPNIQAVLLPK RHLQLAVRNDEELNKLLGGVTIAQGGVLPN QGGVLPNIQAVLLPKKTESHKPGKNK____ K L L P K K 2 0 1 0 0 2 0 4 0 2 5 1 0 0 2 0 1 0 0 3 0 0 23 0 2270.3726 Q8IUE6;Q96QV6;P16104 Q96QV6 97 119 HIST2H2AB;HIST1H2AA;H2AFX Histone H2A type 2-B;Histone H2A type 1-A;Histone H2AX no no 2;3 6.4576E-34 169.58 18 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7436 1622;1271 7599 27071;27072;27073;27074;27075;27076;27077;27078;27079;27080;27081;27082;27083;27084;27085;27086;27087;27088;27089;27090;27091 40888;40889;40890;40891;40892;40893;40894;40895;40896;40897;40898;40899;40900;40901;40902;40903;40904;40905;40906;40907;40908 40891 21 LLGGVTIAQGGVLPNIQAVLLPKK RHLQLAVRNDEELNKLLGGVTIAQGGVLPN GGVLPNIQAVLLPKKTESHKPGKNK_____ K L L K K T 2 0 1 0 0 2 0 4 0 2 5 2 0 0 2 0 1 0 0 3 0 0 24 1 2398.4676 Q8IUE6;Q96QV6;P16104 Q96QV6 97 120 HIST2H2AB;HIST1H2AA;H2AFX Histone H2A type 2-B;Histone H2A type 1-A;Histone H2AX no no 3 0.00027066 87.062 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7437 1622;1271 7600 27092 40909 40909 1 LLGKVTIAQGGVLPNIQAVLLPK RHLQLAIRNDEELNKLLGKVTIAQGGVLPN QGGVLPNIQAVLLPKKTESHHKAK______ K L L P K K 2 0 1 0 0 2 0 3 0 2 5 2 0 0 2 0 1 0 0 3 0 0 23 1 2341.4461 A3KPC7;A0A024RAS2;B2R5B3;A4FTV9;A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8;H0YFX9;B4E0B3 A3KPC7 97 119 HIST1H2AH;H2AFJ;HIST1H2AK;HIST1H2AJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG Histone H2A;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1 yes no 3 0.019632 84.324 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7438 248 7601 27093 40910 40910 1 LLGLGSASGSVGR CKREGGDPEEKGVDRLLGLGSASGSVGRVA DRLLGLGSASGSVGRVAMSREDKEAAKLGL R L L G R V 1 1 0 0 0 0 0 4 0 0 3 0 0 0 0 3 0 0 0 1 0 0 13 0 1172.6513 Q9BU76 Q9BU76 118 130 MMTAG2 Multiple myeloma tumor-associated protein 2 yes yes 2 0.00013893 78.655 1 2 0.56375 0.8108 9.9217 2 Median NaN NaN NaN 0 0 Median 0.56375 0.8108 9.9217 2 0 Median 20555000 14643000 5911600 4772100 4772100 0 15783000 9871400 5911600 7439 1715 7602 27094;27095;27096 40911;40912;40913 40912 3 LLGNTFVALSDLR EEDQRLINLVGESLRLLGNTFVALSDLRCN LRLLGNTFVALSDLRCNLACTPPRHLHVVR R L L L R C 1 1 1 1 0 0 0 1 0 0 4 0 0 1 0 1 1 0 0 1 0 0 13 0 1417.7929 F6S6P2;X6REW1;A0A0G2JJM1;A0A0G2JL47;A0A024RCR6;A0A0G2JK23;P46379 F6S6P2 326 338 BAG6;BAT3 Large proline-rich protein BAG6 yes no 2 1.597E-05 85.963 2 0.30435 0.42846 NaN 1 Median 0.30435 0.42846 NaN 1 0 Median NaN NaN NaN 0 0 Median 2262000 1687900 574060 2262000 1687900 574060 0 0 0 7440 301 7603 27097;27098 40914;40915 40915 2 LLGNVLVVVLAR ELHCDKLHVDPENFRLLGNVLVVVLARRFG NFRLLGNVLVVVLARRFGSEFSPELQASFQ R L L A R R 1 1 1 0 0 0 0 1 0 0 4 0 0 0 0 0 0 0 0 4 0 0 12 0 1264.8231 CON__Q3SX09;CON__P02070 CON__Q3SX09 160 171 yes no 2 3.6033E-18 172.94 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 115390000 115390000 0 115390000 115390000 0 0 0 0 + 7441 969 7604 27099;27100;27101 40916;40917;40918;40919;40920 40920 5 LLGQFTLIGIPPAPR IKVCQGEREMAGDNKLLGQFTLIGIPPAPR LLGQFTLIGIPPAPRGVPQIEVTFDIDANG K L L P R G 1 1 0 0 0 1 0 2 0 2 3 0 0 1 3 0 1 0 0 0 0 0 15 0 1591.945 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z4T3;A1XP52;H0Y8S0 B7Z4V2 485 499 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 1.9802E-23 176.78 5 0.48795 0.66287 20.54 5 Median 0.48795 0.66287 20.54 5 0 Median NaN NaN NaN 0 0 Median 46313000 30390000 15922000 46313000 30390000 15922000 0 0 0 7442 910 7605 27102;27103;27104;27105;27106 40921;40922;40923;40924;40925;40926;40927;40928;40929;40930 40929 10 LLGRVTIAQGGVLPNIQAVLLPK RHLQLAIRNDEELNKLLGRVTIAQGGVLPN QGGVLPNIQAVLLPKKTESHHKAKGK____ K L L P K K 2 1 1 0 0 2 0 3 0 2 5 1 0 0 2 0 1 0 0 3 0 0 23 1 2369.4522 Q08AJ9;A0A024R017;Q93077;Q7L7L0;P04908 Q08AJ9 97 119 HIST1H2AB;HIST1H2AC;HIST3H2A Histone H2A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E yes no 3 7.2293E-10 130.37 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7443 26 7606 27107;27108 40931;40932 40931 2 LLGSLYALGIPK LNSQIASVWHGTLSKLLGSLYALGIPKASK LSKLLGSLYALGIPKASKELQSVEQEVRWR K L L P K A 1 0 0 0 0 0 0 2 0 1 4 1 0 0 1 1 0 0 1 0 0 0 12 0 1243.754 B3KM73;D3DVL7;B4DU42;Q969Z0;C9J7P5;C9IZN7 B3KM73 149 160 TBRG4 Protein TBRG4 yes no 2 0.00088311 67.563 2 0.39204 0.49344 11.675 2 Median 0.39204 0.49344 11.675 2 0 Median NaN NaN NaN 0 0 Median 6630800 4076600 2554200 6630800 4076600 2554200 0 0 0 7444 752 7607 27109;27110 40933;40934 40933 2 LLGSMPENAQIDDDVFDK NSNAVRFRVCLLINKLLGSMPENAQIDDDV SMPENAQIDDDVFDKINKAMLIRLKDKIPN K L L D K I 1 0 1 4 0 1 1 1 0 1 2 1 1 1 1 1 0 0 0 1 0 0 18 0 2005.9303 Q9BPX3;Q6NUR1;D6RA93 Q9BPX3 125 142 NCAPG Condensin complex subunit 3 yes no 2 7.9941E-15 130.24 2 0.88513 1.1523 21.932 2 Median 0.88513 1.1523 21.932 2 0 Median NaN NaN NaN 0 0 Median 4637000 2106100 2530800 4637000 2106100 2530800 0 0 0 7445 1706 7608;7609 27111;27112 40935;40936;40937;40938 40937 768 4 LLGTIYTAAEEIEAVGGK ANIVIAAKTAQPHPKLLGTIYTAAEEIEAV TIYTAAEEIEAVGGKALPCIVDVRDEQQIS K L L G K A 3 0 0 0 0 0 3 3 0 2 2 1 0 0 0 0 2 0 1 1 0 0 18 0 1833.9724 B2R923;A0A024R159;Q6YN16 B2R923 50 67 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 2 0.01124 58.116 1 0.30776 0.39529 NaN 1 Median 0.30776 0.39529 NaN 1 0 Median NaN NaN NaN 0 0 Median 4267800 3629700 638100 4267800 3629700 638100 0 0 0 7446 51 7610 27113 40939 40939 1 LLGTPDIGSISNLLIK SSASVPGHVTLTNPRLLGTPDIGSISNLLI LGTPDIGSISNLLIKASQQSLGIQDQPVAL R L L I K A 0 0 1 1 0 0 0 2 0 3 4 1 0 0 1 2 1 0 0 0 0 0 16 0 1652.9713 Q03164;B4E012 Q03164 3369 3384 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 6.1917E-14 151.26 3 1.0615 1.377 1.9837 3 Median 1.0615 1.377 1.9837 3 0 Median NaN NaN NaN 0 0 Median 22888000 10444000 12444000 22888000 10444000 12444000 0 0 0 7447 1438 7611 27114;27115;27116 40940;40941;40942;40943;40944;40945;40946 40942 7 LLHGSPNLR ASSTCNFVSNEVLGRLLHGSPNLRLLDLRG NEVLGRLLHGSPNLRLLDLRGCARITPAGL R L L L R L 0 1 1 0 0 0 0 1 1 0 3 0 0 0 1 1 0 0 0 0 0 0 9 0 1005.572 Q71RB6;Q8N531 Q71RB6 140 148 FBXL6 F-box/LRR-repeat protein 6 yes no 3 0.011469 40.882 1 0.54601 0.74282 NaN 1 Median 0.54601 0.74282 NaN 1 0 Median NaN NaN NaN 0 0 Median 3144800 2241400 903480 3144800 2241400 903480 0 0 0 7448 1606 7612 27117 40947 40947 1 LLHIEELR DTGDAVLNEAAQILRLLHIEELRELQTKIN EAAQILRLLHIEELRELQTKINEAIVAVQA R L L L R E 0 1 0 0 0 0 2 0 1 1 3 0 0 0 0 0 0 0 0 0 0 0 8 0 1021.592 Q5RLJ0;Q549M8;Q9Y224 Q5RLJ0 206 213 C14orf166 UPF0568 protein C14orf166 yes no 3 0.018885 58.596 1 1 0.57433 0.79377 3.2379 2 Median 0.56919 0.7758 NaN 1 0 Median 0.57952 0.81215 NaN 1 0 Median 19210000 11669000 7540500 10826000 6158400 4667400 8383800 5510700 2873100 7449 1544 7613 27118;27119 40948;40949;40950 40949 3 LLHYAGEVTYSVTGFLDK ADQRTRKSLGRGEFRLLHYAGEVTYSVTGF YAGEVTYSVTGFLDKNNDLLFRNLKETMCS R L L D K N 1 0 0 1 0 0 1 2 1 0 3 1 0 1 0 1 2 0 2 2 0 0 18 0 2012.0255 F5H6E2;B7Z3E5;O00159;D3DTH7;B7Z9C0 F5H6E2 520 537 MYO1C Unconventional myosin-Ic yes no 3 0.00012001 71.685 2 0.68492 0.86007 14.076 2 Median 0.68492 0.86007 14.076 2 0 Median NaN NaN NaN 0 0 Median 27451000 16452000 10998000 27451000 16452000 10998000 0 0 0 7450 905 7614 27120;27121 40951;40952;40953;40954 40953 4 LLIELLR LKYWQRLRHDLERARLLIELLRKREKLKRE RHDLERARLLIELLRKREKLKREQVKVEQV R L L L R K 0 1 0 0 0 0 1 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 7 0 868.57459 Q86X06;A0A024R4V5;B4E3L9;A0A024R4W4;O95696;B7Z926;Q9Y4Q3;J3KQ61;Q59G93;B4DZ41 Q86X06 537 543 BRD1;DKFZp434B094 Bromodomain-containing protein 1 yes no 2 0.035388 84.359 2 1.2434 1.7235 NaN 1 Median 1.2434 1.7235 NaN 1 0 Median NaN NaN NaN 0 0 Median 4433600 1725200 2708400 4433600 1725200 2708400 0 0 0 7451 128 7615 27122;27123 40955;40956 40956 2 LLIIGTTSR ALLVLLKKAPPQGRKLLIIGTTSRKDVLQE PPQGRKLLIIGTTSRKDVLQEMEMLNAFST K L L S R K 0 1 0 0 0 0 0 1 0 2 2 0 0 0 0 1 2 0 0 0 0 0 9 0 972.59678 B4DGR3;I3L0N3;B7Z5J7;P46459;B7Z9U2;B4DH19;B4DSK5;D3DXJ4;Q96D47;I3L2G1;K7EQD6 B4DGR3 598 606 NSF Vesicle-fusing ATPase yes no 2 0.02911 49.418 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1437100 0 1437100 0 0 0 1437100 0 1437100 7452 805 7616 27124 40957 40957 1 LLILALER SPIPFPPLSYKHDTKLLILALERLKEAYSV SYKHDTKLLILALERLKEAYSVKSRLNQSQ K L L E R L 1 1 0 0 0 0 1 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 8 0 939.6117 Q6P2Q9;I3L0J9 Q6P2Q9 838 845 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.00027413 158.36 3 1 0.54059 0.74755 10.555 3 Median 0.54059 0.74755 10.555 3 0 Median NaN NaN NaN 0 0 Median 19728000 12489000 7238700 19728000 12489000 7238700 0 0 0 7453 1592 7617 27125;27126;27127;27128 40958;40959;40960;40961 40959 4 LLINLYK DANFTVVVMMPEAKRLLINLYKLVKSQISV VMMPEAKRLLINLYKLVKSQISVYSELNKI R L L Y K L 0 0 1 0 0 0 0 0 0 1 3 1 0 0 0 0 0 0 1 0 0 0 7 0 875.54804 Q9H8H0;J3QKV1 Q9H8H0 670 676 NOL11 Nucleolar protein 11 yes no 2 0.014992 91.584 1 1 0.56145 0.74068 25.282 2 Median 0.67584 0.88567 NaN 1 0 Median 0.46643 0.61943 NaN 1 0 Median 8127000 5131900 2995100 5134000 3092200 2041900 2993000 2039700 953290 7454 1743 7618 27129;27130 40962;40963 40962 2 LLITGTPLQNSLK SLLYKTLIDFKSNHRLLITGTPLQNSLKEL HRLLITGTPLQNSLKELWSLLHFIMPEKFS R L L L K E 0 0 1 0 0 1 0 1 0 1 4 1 0 0 1 1 2 0 0 0 0 0 13 0 1396.829 A0A024RC75;O14647;A0A1B0GTU9;A8K9Y5;O14646 O14646 639 651 CHD2;CHD1 Chromodomain-helicase-DNA-binding protein 2;Chromodomain-helicase-DNA-binding protein 1 no no 2 1.9107E-11 136.52 4 2 0.66157 0.84705 16.202 6 Median 0.64901 0.82344 3.2576 4 0 Median 0.74111 1.1204 5.7589 2 0 Median 112450000 67984000 44468000 81126000 50076000 31050000 31327000 17909000 13418000 7455 1169;289 7619 27131;27132;27133;27134;27135;27136 40964;40965;40966;40967;40968;40969;40970;40971;40972;40973;40974;40975 40968 12 LLIVSTTPYSEK SYQSPHGIPIDLLDRLLIVSTTPYSEKDTK LDRLLIVSTTPYSEKDTKQILRIRCEEEDV R L L E K D 0 0 0 0 0 0 1 0 0 1 2 1 0 0 1 2 2 0 1 1 0 0 12 0 1349.7442 Q9Y230;B3KNL2;M0R0Y3 Q9Y230 354 365 RUVBL2 RuvB-like 2 yes no 2 1.0436E-15 136.63 4 2 0.65149 0.81822 37.547 6 Median 0.63675 0.79851 5.414 4 0 Median 1.0247 1.6196 4.1947 2 0 Median 233710000 133360000 100350000 167790000 101330000 66456000 65926000 32035000 33890000 7456 1801 7620 27137;27138;27139;27140;27141;27142 40976;40977;40978;40979;40980;40981;40982;40983;40984 40980 9 LLLAAR SDGIYIINLKRTWEKLLLAARAIVAIENPA INLKRTWEKLLLAARAIVAIENPADVSVIS K L L A R A 2 1 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 6 0 655.4381 C9J9K3;A0A024R2P0;A0A0C4DG17;P08865;A0A024R7P5;F8WD59 C9J9K3 58 63 RPSA;LOC388524 40S ribosomal protein SA yes no 2 0.0048876 100.04 1 0.83838 1.1487 NaN 1 Median 0.83838 1.1487 NaN 1 0 Median NaN NaN NaN 0 0 Median 66525000 36100000 30425000 66525000 36100000 30425000 0 0 0 7457 90 7621 27143 40985 40985 0 LLLAFQK KHNSWEPEENILDPRLLLAFQKKEHEKEVQ EENILDPRLLLAFQKKEHEKEVQNRKRGKR R L L Q K K 1 0 0 0 0 1 0 0 0 0 3 1 0 1 0 0 0 0 0 0 0 0 7 0 831.52182 Q14781 Q14781 54 60 CBX2 Chromobox protein homolog 2 yes yes 2 0.027093 84.025 2 1 1.0421 1.3876 24.602 3 Median 1.1216 1.4249 34.725 2 0 Median 1.0421 1.3876 NaN 1 0 Median 9230400 4250800 4979600 6174100 2981300 3192900 3056300 1269600 1786700 7458 1496 7622 27144;27145;27146 40986;40987;40988 40987 3 LLLCGGAPLSATTQR FVFRKVRSLLGGNIRLLLCGGAPLSATTQR LLLCGGAPLSATTQRFMNICFCCPVGQGYG R L L Q R F 2 1 0 0 1 1 0 2 0 0 4 0 0 0 1 1 2 0 0 0 0 0 15 0 1556.8345 B3KN05;B2RBE0;A0A024R497;O95573;B3KMA6 B3KN05 436 450 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes no 2 0.030994 36.32 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2599500 0 2599500 0 0 0 2599500 0 2599500 7459 118 7623 27147 40989 40989 1 LLLDTFEYQGLVK TFQKRQKLTSEGAAKLLLDTFEYQGLVKHT AKLLLDTFEYQGLVKHTGGCHCGAVRFEVW K L L V K H 0 0 0 1 0 1 1 1 0 0 4 1 0 1 0 0 1 0 1 1 0 0 13 0 1537.8392 A0A0M3HER2;Q7Z7K6 Q7Z7K6 135 147 CENPV Centromere protein V no no 2 4.8704E-52 232.41 4 2 0.97259 1.278 14.67 6 Median 1.0891 1.4251 13.542 4 0 Median 0.74195 1.1698 2.4259 2 0 Median 977420000 505290000 472130000 461540000 214650000 246890000 515880000 290640000 225240000 7460 1619;444 7624 27148;27149;27150;27151;27152;27153 40990;40991;40992;40993;40994;40995;40996;40997;40998;40999;41000;41001;41002 40993 13 LLLEAQAATGFLLDPVK YQALKKGLLSAEVARLLLEAQAATGFLLDP LEAQAATGFLLDPVKGERLTVDEAVRKGLV R L L V K G 3 0 0 1 0 1 1 1 0 0 5 1 0 1 1 0 1 0 0 1 0 0 17 0 1798.024 Q15149;D3DWL0;Q96IE3 Q15149 3859 3875 PLEC;PLEC1 Plectin yes no 2 3.1714E-44 162.32 4 0.67759 0.84896 8.5371 4 Median 0.67759 0.84896 8.5371 4 0 Median NaN NaN NaN 0 0 Median 121020000 70984000 50038000 121020000 70984000 50038000 0 0 0 7461 1507 7625 27154;27155;27156;27157 41003;41004;41005;41006;41007;41008;41009;41010 41008 8 LLLEEIYR GAAVLPEDLGRNCARLLLEEIYRGGCVDST LGRNCARLLLEEIYRGGCVDSTNQSLALLL R L L Y R G 0 1 0 0 0 0 2 0 0 1 3 0 0 0 0 0 0 0 1 0 0 0 8 0 1047.5964 Q9Y2P8;Q5VZU3;Q5VZU2 Q9Y2P8 282 289 RCL1 RNA 3-terminal phosphate cyclase-like protein yes no 2 0.00047588 124.59 4 2 0.85539 1.1712 10.388 5 Median 0.94856 1.2651 6.324 3 0 Median 0.74472 1.0742 12.231 2 0 Median 78528000 44877000 33650000 53071000 30631000 22440000 25456000 14246000 11210000 7462 1806 7626 27158;27159;27160;27161;27162;27163 41011;41012;41013;41014;41015;41016;41017;41018;41019;41020 41011 10 LLLEFTDTSYEEK VLGYWDIRGLAHAIRLLLEFTDTSYEEKRY IRLLLEFTDTSYEEKRYTCGEAPDYDRSQW R L L E K R 0 0 0 1 0 0 3 0 0 0 3 1 0 1 0 1 2 0 1 0 0 0 13 0 1586.7716 Q6FGJ9;Q59EJ5;P21266;A4UJ43;A0A0A0MTN3 Q6FGJ9 23 35 GSTM3 Glutathione S-transferase Mu 3 yes no 2 1.9777E-16 169.99 4 1 0.31918 0.40411 130.66 4 Median 0.31064 0.39183 7.0421 3 0 Median 3.4894 5.3017 NaN 1 0 Median 50253000 34473000 15780000 39509000 31668000 7841100 10744000 2804500 7939400 7463 1286 7627 27164;27165;27166;27167;27168 41021;41022;41023;41024;41025;41026;41027;41028;41029;41030 41021 10 LLLEQILNK LPHVFVNCVECFTLRLLLEQILNKLNHLSS ECFTLRLLLEQILNKLNHLSSSEDGCSTEI R L L N K L 0 0 1 0 0 1 1 0 0 1 4 1 0 0 0 0 0 0 0 0 0 0 9 0 1082.6699 Q9UDM8;A8K8C0;A4D0P7;O43913;Q53FC8 Q9UDM8 71 79 ORC5L;ORC5 Origin recognition complex subunit 5 yes no 2 3.2933E-05 134.81 2 0.45771 0.59589 12.31 2 Median 0.45771 0.59589 12.31 2 0 Median NaN NaN NaN 0 0 Median 7362100 4847700 2514500 7362100 4847700 2514500 0 0 0 7464 543 7628 27169;27170 41031;41032;41033 41031 3 LLLETHLPSK NANAVSEGVVHEDLRLLLETHLPSKKKKVL HEDLRLLLETHLPSKKKKVLLGVGDPKIGA R L L S K K 0 0 0 0 0 0 1 0 1 0 4 1 0 0 1 1 1 0 0 0 0 0 10 0 1149.6758 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 78 87 NOP56 Nucleolar protein 56 yes no 2;3 4.8347E-05 122.33 6 1 0.68907 0.88632 9.3788 7 Median 0.69483 0.88826 6.3716 6 0 Median 0.49334 0.74814 NaN 1 0 Median 281150000 163070000 118080000 257490000 147950000 109540000 23655000 15119000 8536100 7465 647 7629 27171;27172;27173;27174;27175;27176;27177 41034;41035;41036;41037;41038;41039;41040;41041;41042;41043;41044;41045;41046;41047;41048 41047 15 LLLETHLPSKK NANAVSEGVVHEDLRLLLETHLPSKKKKVL EDLRLLLETHLPSKKKKVLLGVGDPKIGAA R L L K K K 0 0 0 0 0 0 1 0 1 0 4 2 0 0 1 1 1 0 0 0 0 0 11 1 1277.7707 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 78 88 NOP56 Nucleolar protein 56 yes no 3 0.001356 54.023 1 0.55905 0.68409 NaN 1 Median 0.55905 0.68409 NaN 1 0 Median NaN NaN NaN 0 0 Median 98334000 60199000 38134000 98334000 60199000 38134000 0 0 0 7466 647 7630 27178 41049 41049 1 LLLFSSATDAAIR PGVVHLVAFHPDPTRLLLFSSATDAAIRVW TRLLLFSSATDAAIRVWSLQDRSCLAVLTA R L L I R V 3 1 0 1 0 0 0 0 0 1 3 0 0 1 0 2 1 0 0 0 0 0 13 0 1376.7664 Q12788;J3KNP2 Q12788 166 178 TBL3 Transducin beta-like protein 3 no no 2 2.2348E-09 125.75 4 2 0.82 1.1691 27.686 6 Median 0.78895 1.0634 29.915 4 0 Median 0.8362 1.2902 5.3674 2 0 Median 182440000 102330000 80110000 134400000 76422000 57980000 48034000 25905000 22129000 7467 1456 7631 27179;27180;27181;27182;27183;27184 41050;41051;41052;41053;41054;41055;41056;41057;41058;41059 41057 10 LLLGAGAVAYGVR GRLPAGPRGMGTALKLLLGAGAVAYGVRES LKLLLGAGAVAYGVRESVFTVEGGHRAIFF K L L V R E 3 1 0 0 0 0 0 3 0 0 3 0 0 0 0 0 0 0 1 2 0 0 13 0 1258.7398 J3KPX7;Q99623;F5GY37;B4DW05;F5GWA7;F5H3X6;F5H2D2;F5H0C5 J3KPX7 25 37 PHB2 Prohibitin-2 yes no 2 1.441E-10 141.52 3 2 0.61515 0.85606 58.169 5 Median 0.60186 0.82564 4.2869 3 0 Median 1.4882 2.374 0.80527 2 0 Median 665780000 391300000 274480000 583040000 360000000 223040000 82735000 31302000 51433000 7468 1133 7632 27185;27186;27187;27188;27189 41060;41061;41062;41063;41064;41065;41066;41067;41068 41063 9 LLLGDLAPVR CVVGENGAGKSTMLKLLLGDLAPVRGIRHA STMLKLLLGDLAPVRGIRHAHRNLKIGYFS K L L V R G 1 1 0 1 0 0 0 1 0 0 4 0 0 0 1 0 0 0 0 1 0 0 10 0 1065.6546 B4DRU9;A0A0S2Z5L1;Q9NUQ8 B4DRU9 496 505 ABCF3 ATP-binding cassette sub-family F member 3 yes no 2 0.0010086 103.83 2 0.28409 0.38507 NaN 1 Median 0.28409 0.38507 NaN 1 0 Median NaN NaN NaN 0 0 Median 3223600 2496000 727540 3223600 2496000 727540 0 0 0 7469 481 7633 27190;27191 41069;41070 41070 2 LLLIATGK EEHGKGSLEEAEAERLLLIATGKRTLLIDE EEAEAERLLLIATGKRTLLIDELNKLKNEG R L L G K R 1 0 0 0 0 0 0 1 0 1 3 1 0 0 0 0 1 0 0 0 0 0 8 0 827.54804 B4DSL6;A8K5D9;A0A024RA49;Q9NQW6;H7C1K5 B4DSL6 639 646 ANLN Actin-binding protein anillin yes no 2 0.041839 45.68 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1099400 0 1099400 0 0 0 1099400 0 1099400 7470 235 7634 27192 41071 41071 1 LLLIGDSGVGK ______________________________ LLFKLLLIGDSGVGKTCVLFRFSDDAFNTT K L L G K T 0 0 0 1 0 0 0 3 0 1 3 1 0 0 0 1 0 0 0 1 0 0 11 0 1070.6336 A0A024R7I3;P61006;H0YMN7;Q59EP4;H0YNE9;B4DMS1;Q92930;Q53SX4;H0YLJ8;H0YL94;B3KTE3;G5ELZ6;G5ELZ5;G5EMR8;P59190;D3DV69;A0A024RB27;Q504R6;P51153;P61026;Q5U0I6;P62820;E9PLD0;E7END7;B7Z8M7;Q9H0U4;Q9H1C9;Q6FIG4;Q92928 P61026 12 22 RAB8A;RAB8B;RAB10;RAB15;hCG_1996054;hCG_24991;RAB13;RAB1A;RAB1B;RAB1C Ras-related protein Rab-8A;Ras-related protein Rab-8B;Ras-related protein Rab-15;Ras-related protein Rab-13;Ras-related protein Rab-10;Ras-related protein Rab-1A;Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C no no 2 8.5063E-08 125.82 4 2 0.59504 0.76335 136.55 6 Median 0.57402 0.73133 4.1158 4 0 Median 6.89 10.426 10.529 2 0 Median 303360000 179740000 123620000 278540000 175960000 102580000 24824000 3781900 21042000 7471 1391;178;1412;258 7635 27193;27194;27195;27196;27197;27198 41072;41073;41074;41075;41076;41077;41078;41079;41080;41081 41077 10 LLLIPQGAILR LYLTTNSKNPSGKGKLLLIPQGAILRATNN GKGKLLLIPQGAILRATNNANLQSGSAASG K L L L R A 1 1 0 0 0 1 0 1 0 2 4 0 0 0 1 0 0 0 0 0 0 0 11 0 1205.786 Q9ULM3 Q9ULM3 774 784 YEATS2 YEATS domain-containing protein 2 yes yes 2 0.0029317 71.379 2 0.62001 0.83732 NaN 1 Median 0.62001 0.83732 NaN 1 0 Median NaN NaN NaN 0 0 Median 2757800 1820700 937090 2757800 1820700 937090 0 0 0 7472 1791 7636 27199;27200 41082;41083 41083 2 LLLIQAFRPDR SEETPATPIGQAIHRLLLIQAFRPDRLLAM AIHRLLLIQAFRPDRLLAMAHMFVSTNLGE R L L D R L 1 2 0 1 0 1 0 0 0 1 3 0 0 1 1 0 0 0 0 0 0 0 11 1 1340.7929 Q14204 Q14204 3990 4000 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 0.041402 26.118 1 1.3788 1.8146 NaN 1 Median NaN NaN NaN 0 0 Median 1.3788 1.8146 NaN 1 0 Median 2313300 774770 1538500 0 0 0 2313300 774770 1538500 7473 1483 7637 27201 41084 41084 1 LLLLDTQQEAGMLLR KKLSKAVEKRFPHDKLLLLDTQQEAGMLLR LLLLDTQQEAGMLLRQLANQKQQHLAFRDR K L L L R Q 1 1 0 1 0 2 1 1 0 0 6 0 1 0 0 0 1 0 0 0 0 0 15 0 1712.9495 Q2NL82;I3L1Q5 Q2NL82 220 234 TSR1 Pre-rRNA-processing protein TSR1 homolog yes no 2 0.008434 57.836 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 874780 874780 0 874780 874780 0 0 0 0 7474 1529 7638 27202 41085 41085 1 LLLLESVSGLLQPR ______________________________ RLLLLESVSGLLQPRTGSAVAPVHPPNRSA R L L P R T 0 1 0 0 0 1 1 1 0 0 6 0 0 0 1 2 0 0 0 1 0 0 14 0 1536.9239 O15451;A8K548;C9JFV4;B4DR36;Q8IZL8;I3L1P4;I3L4M7;I3L445 O15451 4 17 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes no 2 3.1319E-18 143.5 2 0.48522 0.6745 5.6072 2 Median 0.48522 0.6745 5.6072 2 0 Median NaN NaN NaN 0 0 Median 6507000 4460900 2046100 6507000 4460900 2046100 0 0 0 7475 613 7639 27203;27204 41086;41087;41088;41089 41089 4 LLLLGAGESGK KQLQKDKQVYRATHRLLLLGAGESGKSTIV ATHRLLLLGAGESGKSTIVKQMRILHVNGF R L L G K S 1 0 0 0 0 0 1 3 0 0 4 1 0 0 0 1 0 0 0 0 0 0 11 0 1056.6179 Q5FWY2;A0A0S2Z3S5;A0A0S2Z3H8;P63092;Q5JWF2;A0A087WTB6;A2A2R6;Q5JWD1;H0Y7E8;A0A087WZE5;Q5JWE9;Q93020;H0Y7F4;A0A024R2Z1;Q8N2B4;Q5T697;B3KP89;A0A142CHG9;A8K1Y9;P11488;P63096;P19087;P09471;A8MTJ3;P04899;P38405;P08754 P08754 43 53 GNAS;GNAO1;GNAT2;WUGSC:H_LUCA16.1;GNAT1;GNAL;GNAI1;GNAT3;GNAI2;GNAI3 Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(t) subunit alpha-1;Guanine nucleotide-binding protein G(i) subunit alpha-1;Guanine nucleotide-binding protein G(t) subunit alpha-2;Guanine nucleotide-binding protein G(o) subunit alpha;Guanine nucleotide-binding protein G(t) subunit alpha-3;Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(olf) subunit alpha;Guanine nucleotide-binding protein G(k) subunit alpha no no 2 0.0011461 79.974 4 0.61268 0.78558 14.341 4 Median 0.61268 0.78558 14.341 4 0 Median NaN NaN NaN 0 0 Median 32132000 20630000 11501000 32132000 20630000 11501000 0 0 0 7476 452;1246 7640 27205;27206;27207;27208 41090;41091;41092;41093;41094;41095;41096;41097;41098 41094 9 LLLLQK NGMYDGSALIRASGKLLLLQKMLKNLKEGG SALIRASGKLLLLQKMLKNLKEGGHRVLIF K L L Q K M 0 0 0 0 0 1 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 6 0 726.50036 B3KY63;F5GWX5;A0A0C4DGG9;Q14839;O75052 B3KY63 1026 1031 CHD4;NOS1AP Chromodomain-helicase-DNA-binding protein 4;Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein yes no 2 0.044875 104.03 2 0.73413 0.92455 7.6666 2 Median 0.73413 0.92455 7.6666 2 0 Median NaN NaN NaN 0 0 Median 88186000 48848000 39339000 88186000 48848000 39339000 0 0 0 7477 428 7641 27209;27210 41099;41100 41100 2 LLLNNDNLLR HAPPGEFNEVFNDVRLLLNNDNLLRDGAAH FNDVRLLLNNDNLLRDGAAHAFAQYNMDQF R L L L R D 0 1 3 1 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 10 0 1196.6877 A8K0T9;A0A024R0E5;P52907;Q53GE2;Q53GC7;A4D0V4;P47755;C9JUG7;F8W9N7;A0A0D9SET8 A8K0T9 38 47 CAPZA1;CAPZA2 F-actin-capping protein subunit alpha-1;F-actin-capping protein subunit alpha-2 no no 2 0.00045953 89.355 3 1 1.1523 1.5509 34.377 3 Median 0.9541 1.2776 27.413 2 0 Median 1.3964 2.0891 NaN 1 0 Median 60160000 24039000 36121000 53175000 21356000 31820000 6984100 2683400 4300700 7478 32;545 7642 27211;27212;27213;27214 41101;41102;41103;41104;41105 41104 5 LLLPGELAK KRSTITSREIQTAVRLLLPGELAKHAVSEG IQTAVRLLLPGELAKHAVSEGTKAVTKYTS R L L A K H 1 0 0 0 0 0 1 1 0 0 4 1 0 0 1 0 0 0 0 0 0 0 9 0 952.59572 B2R4S9;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;B4DR52;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;O60814;Q0D2M2;A8K9J7;P57053;L0R4T3;A0A024RCJ2;Q16778;P33778;P23527;P06899;Q8N257 B2R4S9 101 109 HIST1H2BI;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;H2BFS;ABCF2;HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B no no 1;2 4.742E-06 143.89 220 23 0.73632 0.93575 8.4173 127 Median 0.74086 0.94113 8.3741 113 0 Median 0.56877 0.88895 6.0772 14 0 Median 35393000000 32499000000 2894500000 25285000000 22936000000 2348700000 10109000000 9562700000 545800000 7479 25;295 7643 27215;27216;27217;27218;27219;27220;27221;27222;27223;27224;27225;27226;27227;27228;27229;27230;27231;27232;27233;27234;27235;27236;27237;27238;27239;27240;27241;27242;27243;27244;27245;27246;27247;27248;27249;27250;27251;27252;27253;27254;27255;27256;27257;27258;27259;27260;27261;27262;27263;27264;27265;27266;27267;27268;27269;27270;27271;27272;27273;27274;27275;27276;27277;27278;27279;27280;27281;27282;27283;27284;27285;27286;27287;27288;27289;27290;27291;27292;27293;27294;27295;27296;27297;27298;27299;27300;27301;27302;27303;27304;27305;27306;27307;27308;27309;27310;27311;27312;27313;27314;27315;27316;27317;27318;27319;27320;27321;27322;27323;27324;27325;27326;27327;27328;27329;27330;27331;27332;27333;27334;27335;27336;27337;27338;27339;27340;27341;27342;27343;27344;27345;27346;27347;27348;27349;27350;27351;27352;27353;27354;27355;27356;27357;27358;27359;27360;27361;27362;27363;27364;27365;27366;27367;27368;27369;27370;27371;27372;27373;27374;27375;27376;27377;27378;27379;27380;27381;27382;27383;27384;27385;27386;27387;27388;27389;27390;27391;27392;27393;27394;27395;27396;27397;27398;27399;27400;27401;27402;27403;27404;27405;27406;27407;27408;27409;27410;27411;27412;27413;27414;27415;27416;27417;27418;27419;27420;27421;27422;27423;27424;27425;27426;27427;27428;27429;27430;27431;27432;27433;27434;27435;27436;27437;27438;27439;27440;27441;27442;27443;27444;27445;27446;27447;27448;27449;27450;27451;27452;27453;27454;27455;27456;27457 41106;41107;41108;41109;41110;41111;41112;41113;41114;41115;41116;41117;41118;41119;41120;41121;41122;41123;41124;41125;41126;41127;41128;41129;41130;41131;41132;41133;41134;41135;41136;41137;41138;41139;41140;41141;41142;41143;41144;41145;41146;41147;41148;41149;41150;41151;41152;41153;41154;41155;41156;41157;41158;41159;41160;41161;41162;41163;41164;41165;41166;41167;41168;41169;41170;41171;41172;41173;41174;41175;41176;41177;41178;41179;41180;41181;41182;41183;41184;41185;41186;41187;41188;41189;41190;41191;41192;41193;41194;41195;41196;41197;41198;41199;41200;41201;41202;41203;41204;41205;41206;41207;41208;41209;41210;41211;41212;41213;41214;41215;41216;41217;41218;41219;41220;41221;41222;41223;41224;41225;41226;41227;41228;41229;41230;41231;41232;41233;41234;41235;41236;41237;41238;41239;41240;41241;41242;41243;41244;41245;41246;41247;41248;41249;41250;41251;41252;41253;41254;41255;41256;41257;41258;41259;41260;41261;41262;41263;41264;41265;41266;41267;41268;41269;41270;41271;41272;41273;41274;41275;41276;41277;41278;41279;41280;41281;41282;41283;41284;41285;41286;41287;41288;41289;41290;41291;41292;41293;41294;41295;41296;41297;41298;41299;41300;41301;41302;41303;41304;41305;41306;41307;41308;41309;41310;41311;41312;41313;41314;41315;41316;41317;41318;41319;41320;41321;41322;41323;41324;41325;41326;41327;41328;41329;41330;41331;41332;41333;41334;41335;41336;41337;41338;41339;41340;41341;41342;41343;41344;41345;41346;41347;41348;41349;41350;41351;41352;41353;41354;41355;41356;41357;41358;41359;41360;41361;41362;41363;41364;41365;41366;41367;41368;41369;41370;41371;41372;41373;41374;41375;41376;41377;41378;41379;41380;41381;41382;41383;41384;41385;41386;41387;41388;41389;41390;41391;41392;41393;41394;41395;41396;41397;41398;41399;41400;41401;41402;41403;41404;41405;41406;41407;41408;41409;41410;41411;41412;41413;41414;41415;41416;41417;41418;41419;41420;41421;41422;41423;41424;41425;41426;41427;41428;41429;41430;41431;41432;41433;41434;41435;41436;41437;41438;41439;41440;41441;41442;41443;41444;41445;41446;41447;41448;41449;41450;41451;41452;41453;41454;41455;41456;41457;41458;41459;41460;41461;41462;41463;41464;41465;41466;41467;41468;41469;41470;41471;41472;41473;41474;41475;41476;41477;41478;41479;41480;41481;41482;41483;41484;41485;41486;41487;41488;41489;41490;41491;41492;41493;41494;41495;41496;41497;41498;41499;41500;41501;41502;41503;41504;41505;41506;41507;41508;41509;41510;41511;41512;41513 41154 408 LLLPGELAKHAVSEGTK KRSTITSREIQTAVRLLLPGELAKHAVSEG LPGELAKHAVSEGTKAVTKYTSSK______ R L L T K A 2 0 0 0 0 0 2 2 1 0 4 2 0 0 1 1 1 0 0 1 0 0 17 1 1761.9989 B2R4S9;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;B4DR52;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;O60814;A8K9J7;P57053;L0R4T3;A0A024RCJ2;Q16778;P33778;P23527;P06899;Q8N257 B2R4S9 101 117 HIST1H2BI;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;H2BFS;ABCF2;HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B no no 3;4 8.2022E-06 62.765 4 0.60923 0.98587 1.6617 4 Median NaN NaN NaN 0 0 Median 0.60923 0.98587 1.6617 4 0 Median 292090000 175190000 116890000 0 0 0 292090000 175190000 116890000 7480 25;295 7644 27458;27459;27460;27461 41514;41515;41516;41517;41518;41519;41520;41521;41522 41519 9 LLLPGVIK SAGDGFHGDVYLTVKLLLPGVIKTVYNLND DVYLTVKLLLPGVIKTVYNLNDKQIVKLFS K L L I K T 0 0 0 0 0 0 0 1 0 1 3 1 0 0 1 0 0 0 0 1 0 0 8 0 851.58443 P49916;B7Z6I3;K7ERZ5;K7EQB6 P49916 309 316 LIG3 DNA ligase 3;DNA ligase yes no 2 0.033769 49.59 1 0.77911 0.98127 NaN 1 Median 0.77911 0.98127 NaN 1 0 Median NaN NaN NaN 0 0 Median 7544900 3776100 3768800 7544900 3776100 3768800 0 0 0 7481 1356 7645 27462 41523 41523 1 LLLPLFR CALDCGAGIGRITKRLLLPLFREVDMVDIT GIGRITKRLLLPLFREVDMVDITEDFLVQA R L L F R E 0 1 0 0 0 0 0 0 0 0 4 0 0 1 1 0 0 0 0 0 0 0 7 0 870.56911 A0A024R8E4;Q9BV86 A0A024R8E4 79 85 C9orf32;NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed yes no 2 0.0094493 128 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1913200 1913200 0 1913200 1913200 0 0 0 0 7482 196 7646 27463;27464;27465 41524;41525;41526 41525 3 LLLPTPTVK HEESESLQEDMLGNRLLLPTPTVKQESKDV DMLGNRLLLPTPTVKQESKDVEENVGLIVY R L L V K Q 0 0 0 0 0 0 0 0 0 0 3 1 0 0 2 0 2 0 0 1 0 0 9 0 980.62702 A0A0C4DGG8;Q8IX12 A0A0C4DGG8 989 997 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 2 0.0054128 72.138 3 0.72423 0.91893 4.0006 3 Median 0.72423 0.91893 4.0006 3 0 Median NaN NaN NaN 0 0 Median 41121000 23471000 17650000 41121000 23471000 17650000 0 0 0 7483 427 7647 27466;27467;27468 41527;41528;41529 41529 3 LLLPVAEYFSGVQLPPHLSPFVTEK CYVQPQWVFDSVNARLLLPVAEYFSGVQLP GVQLPPHLSPFVTEKEGDYVPPEKLKLLAL R L L E K E 1 0 0 0 0 1 2 1 1 0 5 1 0 2 4 2 1 0 1 3 0 0 25 0 2780.5153 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6;H7C267;Q6ZUE0 B5MCF9 389 413 PES1 Pescadillo homolog yes no 3 2.0987E-14 112.41 3 0.90125 1.1823 11.322 3 Plateau 0.90125 1.1823 11.322 3 0 Plateau NaN NaN NaN 0 0 Median 361410000 183790000 177620000 361410000 183790000 177620000 0 0 0 7484 735 7648 27469;27470;27471 41530;41531;41532;41533;41534 41534 5 LLLQGEADQSLLTFIDK YQETYLPYMIRSKLKLLLQGEADQSLLTFI LQGEADQSLLTFIDKAMHGELQKAILELHY K L L D K A 1 0 0 2 0 2 1 1 0 1 5 1 0 1 0 1 1 0 0 0 0 0 17 0 1903.0302 P78527 P78527 3051 3067 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 9.4786E-30 175.15 4 0.49049 0.62156 6.9875 4 Median 0.49049 0.62156 6.9875 4 0 Median NaN NaN NaN 0 0 Median 198710000 132290000 66429000 198710000 132290000 66429000 0 0 0 7485 1427 7649 27472;27473;27474;27475 41535;41536;41537;41538;41539;41540;41541;41542;41543 41540 9 LLLQVQHASK AAISKTAVAPIERVKLLLQVQHASKQITAD IERVKLLLQVQHASKQITADKQYKGIIDCV K L L S K Q 1 0 0 0 0 2 0 0 1 0 3 1 0 0 0 1 0 0 0 1 0 0 10 0 1135.6713 Q6NVC0;P05141;A0A0S2Z359;V9GYG0;A8K787;A0A0S2Z3H3;P12235;Q6I9V5;Q59EI9;P12236 Q6NVC0 59 68 SLC25A5;SLC25A4;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 3 0.0016502 73.841 4 0.52712 0.65016 7.2829 4 Median 0.52712 0.65016 7.2829 4 0 Median NaN NaN NaN 0 0 Median 68600000 46353000 22247000 68600000 46353000 22247000 0 0 0 7486 1234;1260 7650 27476;27477;27478;27479 41544;41545;41546;41547;41548 41546 5 LLLSATSGEK LHNLPKAVDDKQLRKLLLSATSGEKGVRIK KQLRKLLLSATSGEKGVRIKECRVMRDLKG K L L E K G 1 0 0 0 0 0 1 1 0 0 3 1 0 0 0 2 1 0 0 0 0 0 10 0 1017.5706 A0A024R753;Q9NW13 A0A024R753 506 515 RBM28 RNA-binding protein 28 yes no 2 0.0017123 94.692 4 2 0.9871 1.2138 13.213 5 Median 1.0607 1.3815 9.6333 3 0 Median 0.73539 1.0993 2.9543 2 0 Median 96076000 38981000 57094000 77603000 28911000 48692000 18473000 10071000 8402000 7487 169 7651 27480;27481;27482;27483;27484;27485 41549;41550;41551;41552;41553;41554;41555;41556;41557;41558;41559 41553 11 LLLTLIGR L L G R 0 1 0 0 0 0 0 1 0 1 4 0 0 0 0 0 1 0 0 0 0 0 8 0 897.60114 REV__Q7Z745 yes yes 2 0.017225 124.34 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 7488 1858 7652 27486 41560 41560 1 LLLVEPSR MSETMAVCSHLGSCRLLLVEPSRNDLLLRV SHLGSCRLLLVEPSRNDLLLRVRLNVSQDD R L L S R N 0 1 0 0 0 0 1 0 0 0 3 0 0 0 1 1 0 0 0 1 0 0 8 0 925.55967 B7Z8H0;Q96F82;A8K794;Q13415 B7Z8H0 826 833 ORC1L;ORC1 Origin recognition complex subunit 1 yes no 2 0.037453 50.703 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1438400 1438400 0 0 0 0 1438400 1438400 0 7489 630 7653 27487;27488;27489 41561;41562;41563 41561 3 LLLVEPSRNDLLLR MSETMAVCSHLGSCRLLLVEPSRNDLLLRV RLLLVEPSRNDLLLRVRLNVSQDDVLYALK R L L L R V 0 2 1 1 0 0 1 0 0 0 6 0 0 0 1 1 0 0 0 1 0 0 14 1 1649.9828 B7Z8H0;Q96F82;A8K794;Q13415 B7Z8H0 826 839 ORC1L;ORC1 Origin recognition complex subunit 1 yes no 3 0.00059179 62.924 3 2 0.51458 0.68737 11.129 4 Median 0.54253 0.70984 2.3609 3 0 Plateau 0.38595 0.55832 NaN 1 0 Median 33853000 23242000 10611000 18088000 10956000 7132700 15765000 12287000 3478400 7490 630 7654 27490;27491;27492;27493;27494 41564;41565;41566;41567;41568 41567 5 LLMMAGIDDCYTSAR APRGTGIVSAPVPKKLLMMAGIDDCYTSAR LLMMAGIDDCYTSARGCTATLGNFAKATFD K L L A R G 2 1 0 2 1 0 0 1 0 1 2 0 2 0 0 1 1 0 1 0 0 0 15 0 1715.7681 P15880;Q8J014;Q8N5L9;Q6IPX5;Q3KQT6;H0YEN5;E9PQD7;I3L404;E9PM36;Q9BSW5;O60249 P15880 213 227 RPS2;rps2 40S ribosomal protein S2 yes no 2 0.0019819 81.676 1 1 0.48514 0.71129 43.568 2 Median 0.69717 0.96792 NaN 1 0 Median 0.33759 0.5227 NaN 1 0 Median 27730000 20202000 7528100 1251400 797280 454090 26479000 19405000 7074000 7491 1269 7655 27495;27496 41569;41570;41571 41569 532;533 3 LLNAFIVAEK PLYKFSYSNLKEYSRLLNAFIVAEKQKGLA KEYSRLLNAFIVAEKQKGLAVEVGEDFNIK R L L E K Q 2 0 1 0 0 0 1 0 0 1 2 1 0 1 0 0 0 0 0 1 0 0 10 0 1116.6543 A0A024R932;Q8N0S6 A0A024R932 94 103 C1orf155;CENPL Centromere protein L yes no 2 0.0045733 64.04 1 0.60405 0.7712 NaN 1 Median 0.60405 0.7712 NaN 1 0 Median NaN NaN NaN 0 0 Median 5331600 3013700 2317800 5331600 3013700 2317800 0 0 0 7492 212 7656 27497 41572 41572 1 LLNFLMK ATPTGVPKDEVLANRLLNFLMKHVFHPKRA KDEVLANRLLNFLMKHVFHPKRAVFRHNLE R L L M K H 0 0 1 0 0 0 0 0 0 0 3 1 1 1 0 0 0 0 0 0 0 0 7 0 877.50955 P78527 P78527 2215 2221 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.018548 59.641 1 0.61059 0.89864 NaN 1 Median NaN NaN NaN 0 0 Median 0.61059 0.89864 NaN 1 0 Median 8083300 4815200 3268100 0 0 0 8083300 4815200 3268100 7493 1427 7657 27498 41573 41573 630 1 LLNFQR GDLRTKATIELKALRLLNFQRQLRQEVVVC ATIELKALRLLNFQRQLRQEVVVCMRRDTA R L L Q R Q 0 1 1 0 0 1 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 6 0 789.44972 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;Q59FZ6;A5D6X0;P51531;A0A0U1RQZ9;F6VDE0 A7E2E1 409 414 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 0.036304 81.297 1 0.63974 0.84613 NaN 1 Median 0.63974 0.84613 NaN 1 0 Median NaN NaN NaN 0 0 Median 10686000 7263600 3422600 10686000 7263600 3422600 0 0 0 7494 403;1362 7658 27499 41574 41574 1 LLNILDPK EIILFTASKKVYADKLLNILDPKKQLVRHR KKVYADKLLNILDPKKQLVRHRLFREHCVC K L L P K K 0 0 1 1 0 0 0 0 0 1 3 1 0 0 1 0 0 0 0 0 0 0 8 0 924.56442 A0A024R5Q8;Q05D32 A0A024R5Q8 359 366 CTDSPL2 CTD small phosphatase-like protein 2 yes no 2 0.012914 95.531 4 0.64509 0.83485 7.4929 2 Median 0.64509 0.83485 7.4929 2 0 Median NaN NaN NaN 0 0 Median 17968000 11444000 6523800 17968000 11444000 6523800 0 0 0 7495 149 7659 27500;27501;27502;27503 41575;41576;41577;41578 41578 4 LLNILMQLR DIDILNSAGKMDKMRLLNILMQLRKCCNHP KMDKMRLLNILMQLRKCCNHPYLFDGAEPG R L L L R K 0 1 1 0 0 1 0 0 0 1 4 0 1 0 0 0 0 0 0 0 0 0 9 0 1112.674 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370;Q4W5H1;D7EZH4 O60264 446 454 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 2 3.1915E-05 127.84 4 1 1.994 2.7152 20.841 2 Median 1.994 2.7152 20.841 2 0 Median NaN NaN NaN 0 0 Median 8344500 2482900 5861600 8344500 2482900 5861600 0 0 0 7496 1189 7660;7661 27504;27505;27506;27507;27508 41579;41580;41581;41582;41583 41583 433 5 LLNNAFEELVAFQR NVNDLRRKNEKRANRLLNNAFEELVAFQRA RLLNNAFEELVAFQRALKDFVASIDATYAK R L L Q R A 2 1 2 0 0 1 2 0 0 0 3 0 0 2 0 0 0 0 0 1 0 0 14 0 1662.873 Q8NHX6;Q53HJ4;B2R7C5;A0A0S2Z4T1;A0A0S2Z492;P25205;B4DUQ9;J3KQ69 Q8NHX6 65 78 HCC5;MCM3 DNA helicase;DNA replication licensing factor MCM3 yes no 2 1.6889E-14 162.38 2 0.2863 0.38687 35.026 2 Median 0.2863 0.38687 35.026 2 0 Median NaN NaN NaN 0 0 Median 29846000 20813000 9033500 29846000 20813000 9033500 0 0 0 7497 463 7662 27509;27510 41584;41585;41586 41584 3 LLNPLVSK ENPDFQVDEESEEFRLLNPLVSKISEKRKK EESEEFRLLNPLVSKISEKRKKKLRLLEQQ R L L S K I 0 0 1 0 0 0 0 0 0 0 3 1 0 0 1 1 0 0 0 1 0 0 8 0 882.55385 Q9BSC4;B4DS83 Q9BSC4 505 512 NOL10 Nucleolar protein 10 yes no 2 0.0083305 104.44 3 2 0.89072 1.0963 7.182 5 Median 0.91928 1.1471 7.3768 3 0 Median 0.70612 1.0635 4.3011 2 0 Median 146480000 77632000 68847000 108080000 55896000 52181000 38402000 21736000 16665000 7498 1710 7663 27511;27512;27513;27514;27515 41587;41588;41589;41590;41591;41592;41593;41594 41587 8 LLNPSATR KQGELPREVRRAQARLLNPSATRAKPGPQD VRRAQARLLNPSATRAKPGPQDTVERPFYD R L L T R A 1 1 1 0 0 0 0 0 0 0 2 0 0 0 1 1 1 0 0 0 0 0 8 0 870.49232 Q7L4X7;Q96CS0;Q53YP0;B4E1N4;Q9NZM5;B4DND9;B4E013;M0QZ34;M0QX73 Q7L4X7 168 175 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes no 2 0.010353 73.26 1 1 0.72817 0.99564 28.066 2 Median 0.91114 1.2142 NaN 1 0 Median 0.58194 0.81642 NaN 1 0 Median 32900000 20281000 12619000 21033000 12434000 8599500 11867000 7846800 4019800 7499 887 7664 27516;27517 41595;41596;41597 41595 3 LLNTFLER QSIYGGRVDNEFDQRLLNTFLERLFTTRSF DNEFDQRLLNTFLERLFTTRSFDSEFKLAC R L L E R L 0 1 1 0 0 0 1 0 0 0 3 0 0 1 0 0 1 0 0 0 0 0 8 0 1004.5655 Q14204 Q14204 4264 4271 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.012271 85.064 2 0.60583 0.82583 NaN 1 Median 0.60583 0.82583 NaN 1 0 Median NaN NaN NaN 0 0 Median 3103200 1701200 1402000 3103200 1701200 1402000 0 0 0 7500 1483 7665 27518;27519 41598;41599 41599 2 LLNVEVPQK PAASGRIICHSYLERLLNVEVPQKVGSEQK HSYLERLLNVEVPQKVGSEQKEPPEEAEPV R L L Q K V 0 0 1 0 0 1 1 0 0 0 2 1 0 0 1 0 0 0 0 2 0 0 9 0 1038.6073 Q9NQS7;B3KPD3 Q9NQS7 362 370 INCENP Inner centromere protein yes no 2 0.00069979 117.4 4 2 0.96577 1.2766 5.7747 6 Median 0.99565 1.3086 4.3325 4 0 Median 0.76466 1.2056 5.8872 2 0 Median 1107300000 587300000 519980000 596990000 299870000 297120000 510290000 287430000 222860000 7501 1752 7666 27520;27521;27522;27523;27524;27525 41600;41601;41602;41603;41604;41605;41606;41607;41608;41609;41610;41611;41612;41613 41602 14 LLNVWQVR GITGLYFLSGAVHDRLLNVWQVRSENKEKS SGAVHDRLLNVWQVRSENKEKSAVMSFTVT R L L V R S 0 1 1 0 0 1 0 0 0 0 2 0 0 0 0 0 0 1 0 2 0 0 8 0 1026.5974 Q15061;C9IZK7 Q15061 245 252 WDR43 WD repeat-containing protein 43 yes no 2 0.019673 58.167 1 0.57472 0.85363 NaN 1 Median NaN NaN NaN 0 0 Median 0.57472 0.85363 NaN 1 0 Median 15168000 10042000 5126900 0 0 0 15168000 10042000 5126900 7502 1505 7667 27526 41614 41614 1 LLPAELPAK QQPVGIRLLEEALLRLLPAELPAKRVRGKA EEALLRLLPAELPAKRVRGKARLPPDVLRW R L L A K R 2 0 0 0 0 0 1 0 0 0 3 1 0 0 2 0 0 0 0 0 0 0 9 0 950.58007 P78527 P78527 2900 2908 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00096989 113.5 3 2 0.59761 0.77069 34.933 5 Median 0.50183 0.64076 13.257 3 0 Median 0.81308 1.2293 1.6322 2 0 Median 71617000 42225000 29392000 42641000 27500000 15141000 28976000 14725000 14251000 7503 1427 7668 27527;27528;27529;27530;27531 41615;41616;41617;41618;41619;41620;41621;41622 41615 8 LLPAELPAKR QQPVGIRLLEEALLRLLPAELPAKRVRGKA EALLRLLPAELPAKRVRGKARLPPDVLRWV R L L K R V 2 1 0 0 0 0 1 0 0 0 3 1 0 0 2 0 0 0 0 0 0 0 10 1 1106.6812 P78527 P78527 2900 2909 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.013882 35.541 1 0.47935 0.6075 NaN 1 Median 0.47935 0.6075 NaN 1 0 Median NaN NaN NaN 0 0 Median 5098800 3795100 1303700 5098800 3795100 1303700 0 0 0 7504 1427 7669 27532 41623;41624 41624 2 LLPALTVLDIHDNQLTSLPSAIR IISNNKLQSLTDDLRLLPALTVLDIHDNQL DIHDNQLTSLPSAIRELENLQKLNVSHNKL R L L I R E 2 1 1 2 0 1 0 0 1 2 6 0 0 0 2 2 2 0 0 1 0 0 23 0 2499.4061 A0A140VJN3;Q9H9A6 A0A140VJN3 103 125 LRRC40 Leucine-rich repeat-containing protein 40 yes no 3 1.0903E-12 76.733 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3977400 3731900 245480 3977400 3731900 245480 0 0 0 7505 499 7670 27533;27534;27535 41625;41626;41627 41627 3 LLPDITLLEPVEGEAAEELSR KDHAKFSPVATASYRLLPDITLLEPVEGEA LLEPVEGEAAEELSRCFSPGVIEVQEVQGK R L L S R C 2 1 0 1 0 0 5 1 0 1 5 0 0 0 2 1 1 0 0 1 0 0 21 0 2293.2053 Q96HT3;O15160 Q96HT3 227 247 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 2 1.3284E-11 103.88 3 0.53327 0.71588 17.721 2 Median 0.53327 0.71588 17.721 2 0 Median NaN NaN NaN 0 0 Median 25618000 19554000 6064600 25618000 19554000 6064600 0 0 0 7506 1178 7671 27536;27537;27538 41628;41629;41630 41630 3 LLPDTILEK RKRREELFIEQKKRKLLPDTILEKLTTASQ EQKKRKLLPDTILEKLTTASQTNIKKSPGK K L L E K L 0 0 0 1 0 0 1 0 0 1 3 1 0 0 1 0 1 0 0 0 0 0 9 0 1040.6118 A0A024QZW2;Q9UMY1;H7C2B1 A0A024QZW2 113 121 NOL7 Nucleolar protein 7 yes no 2 0.01104 61.962 1 2 0.72378 0.99345 26.076 2 Median 0.95702 1.1946 NaN 1 0 Median 0.54738 0.82616 NaN 1 0 Median 71806000 43295000 28512000 41070000 19562000 21507000 30737000 23733000 7004300 7507 21 7672 27539;27540;27541 41631;41632;41633 41633 3 LLPDTINSINLDR KFSELVMKCLWRMVRLLPDTINSINLDRIL VRLLPDTINSINLDRILLDIHIFMKVFPKE R L L D R I 0 1 2 2 0 0 0 0 0 2 3 0 0 0 1 1 1 0 0 0 0 0 13 0 1482.8042 Q14008;Q8IYN5 Q14008 1719 1731 CKAP5 Cytoskeleton-associated protein 5 yes no 2 0.0020359 62.166 3 0.93231 1.3082 8.5135 3 Median 0.93231 1.3082 8.5135 3 0 Median NaN NaN NaN 0 0 Median 10504000 5324500 5179600 10504000 5324500 5179600 0 0 0 7508 1481 7673 27542;27543;27544 41634;41635;41636;41637 41636 4 LLPEEYHR FTKFIRKFGFELVKRLLPEEYHRVLVNIRK GFELVKRLLPEEYHRVLVNIRKAEARAKRH R L L H R V 0 1 0 0 0 0 2 0 1 0 2 0 0 0 1 0 0 0 1 0 0 0 8 0 1055.54 B3KMR5;Q5JTH9;B3KY97;B3KPQ2 B3KMR5 1023 1030 RRP12 RRP12-like protein yes no 3 0.0015278 108.46 1 1.1644 1.5852 NaN 1 Median 1.1644 1.5852 NaN 1 0 Median NaN NaN NaN 0 0 Median 5464700 2558500 2906200 5464700 2558500 2906200 0 0 0 7509 756 7674 27545 41638 41638 1 LLPELLQPYTER QLVVGVADKDLLKSKLLPELLQPYTERVEH KSKLLPELLQPYTERVEHLSEFLVDIKPSL K L L E R V 0 1 0 0 0 1 2 0 0 0 4 0 0 0 2 0 1 0 1 0 0 0 12 0 1470.8082 Q13057 Q13057 236 247 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes yes 2 0.051375 71.889 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2578200 2578200 0 2578200 2578200 0 0 0 0 7510 1462 7675 27546 41639 41639 1 LLPHIR KAIRGHLENNPALEKLLPHIRGNVGFVFTK LENNPALEKLLPHIRGNVGFVFTKEDLTEI K L L I R G 0 1 0 0 0 0 0 0 1 1 2 0 0 0 1 0 0 0 0 0 0 0 6 0 747.47554 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VWS0;Q53HK9;F8VW21;F8VU65;F8VZS0;G3V210;F8VQY6;F8VPE8;F8VRK7;F8VS58;F8VWV4 Q53HW2 78 83 RPLP0 60S acidic ribosomal protein P0 yes no 2 0.035183 112.88 2 0.86145 1.1859 4.7078 2 Median 0.86145 1.1859 4.7078 2 0 Median NaN NaN NaN 0 0 Median 96259000 51395000 44863000 96259000 51395000 44863000 0 0 0 7511 281 7676 27547;27548 41640;41641 41641 2 LLPLQR SSFKKLQKFYIDPYKLLPLQRFLPRPPGEK QKFYIDPYKLLPLQRFLPRPPGEKGPPRGG K L L Q R F 0 1 0 0 0 1 0 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 6 0 738.47521 A0A024RDJ3;Q9NY12 A0A024RDJ3 151 156 NOLA1;GAR1 H/ACA ribonucleoprotein complex subunit 1 yes no 2 0.035215 105.82 3 0.6728 0.92138 4.5727 3 Median 0.6728 0.92138 4.5727 3 0 Median NaN NaN NaN 0 0 Median 129550000 73635000 55913000 129550000 73635000 55913000 0 0 0 7512 317 7677 27549;27550;27551 41642;41643;41644 41643 3 LLPPLLQIVCK LAVLSDGAGDHIRQRLLPPLLQIVCKGLED IRQRLLPPLLQIVCKGLEDPSQVVRNAALF R L L C K G 0 0 0 0 1 1 0 0 0 1 4 1 0 0 2 0 0 0 0 1 0 0 11 0 1292.789 B3KPY9;Q6I9Y8;B3KSQ4;H0YN14;D3DS63;B3KTB3;B3KT38;B3KPS9;B3KQ33;Q59FI4;Q8TEX9;Q59H62 B3KPY9 53 63 IPO4 Importin-4 yes no 2 0.040804 75.213 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 984370 984370 0 984370 984370 0 0 0 0 7513 766 7678 27552 41645 41645 1 LLPQGLAVYASPENK RGDLVSVKKSLGRNRLLPQGLAVYASPENK LLPQGLAVYASPENKKLFEEEKLLRQEGKL R L L N K K 2 0 1 0 0 1 1 1 0 0 3 1 0 0 2 1 0 0 1 1 0 0 15 0 1598.8668 Q9BYD2;B4DDZ7;B4DUJ1;Q5SZR1 Q9BYD2 123 137 MRPL9 39S ribosomal protein L9, mitochondrial yes no 2 4.0584E-05 77.64 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2039100 2039100 0 2039100 2039100 0 0 0 0 7514 1725 7679 27553 41646 41646 1 LLPSLIGR LSSFDFFLTDARIRRLLPSLIGRHFYQRKK TDARIRRLLPSLIGRHFYQRKKVPVSVNLL R L L G R H 0 1 0 0 0 0 0 1 0 1 3 0 0 0 1 1 0 0 0 0 0 0 8 0 867.55419 O76021;Q32Q62;J3QSV6;A0PJ61;A0PJ87;I3L3U9;I3L3C4 O76021 164 171 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 1.3637E-06 185.22 4 2 0.6235 0.85784 19.456 6 Median 0.64304 0.87851 4.4 4 0 Median 0.37183 0.61414 7.8026 2 0 Median 1038900000 677180000 361740000 604520000 364580000 239930000 434400000 312600000 121800000 7515 1210 7680 27554;27555;27556;27557;27558;27559 41647;41648;41649;41650;41651;41652;41653;41654;41655;41656;41657 41649 11 LLPSSHVAR IPSCKDVAPVEKTIKLLPSSHVARLQIFSV VEKTIKLLPSSHVARLQIFSVEGQKAIQIK K L L A R L 1 1 0 0 0 0 0 0 1 0 2 0 0 0 1 2 0 0 0 1 0 0 9 0 978.56106 A6NHR9;J3KTL8 A6NHR9 1030 1038 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3 0.0036187 57.59 1 0.84383 1.1097 NaN 1 Median 0.84383 1.1097 NaN 1 0 Median NaN NaN NaN 0 0 Median 8429900 4618300 3811600 8429900 4618300 3811600 0 0 0 7516 568 7681 27560 41658;41659 41658 2 LLQAETASNSAR MAESEKSQKLEERLRLLQAETASNSARAAE RLRLLQAETASNSARAAERSSALREEVQSL R L L A R A 3 1 1 0 0 1 1 0 0 0 2 0 0 0 0 2 1 0 0 0 0 0 12 0 1259.647 A0A024R5M9;A0A024R5G4;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1271 1282 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 5.2878E-13 134.68 4 2 0.67398 0.90392 33.876 6 Median 0.69244 0.92934 5.0966 4 0 Median 0.3085 0.48813 1.3953 2 0 Median 143380000 96500000 46882000 73805000 42885000 30920000 69577000 53614000 15962000 7517 148;1499 7682 27561;27562;27563;27564;27565;27566 41660;41661;41662;41663;41664;41665;41666;41667;41668;41669 41663 10 LLQALAQYQNHLQEQPR GRLVKDQEALMKSVKLLQALAQYQNHLQEQ QALAQYQNHLQEQPRKALVDILSEVSKATL K L L P R K 2 1 1 0 0 5 1 0 1 0 4 0 0 0 1 0 0 0 1 0 0 0 17 0 2049.0756 Q9BQG0;I3L1L3;B4DZZ1 Q9BQG0 162 178 MYBBP1A Myb-binding protein 1A yes no 3 3.6088E-31 146.78 3 2 0.65997 0.88796 13.39 5 Median 0.62898 0.83783 4.9942 3 0 Median 0.69905 1.0666 0.51277 2 0 Median 86391000 51866000 34526000 49355000 29287000 20068000 37037000 22579000 14458000 7518 1708 7683 27567;27568;27569;27570;27571 41670;41671;41672;41673;41674;41675;41676 41674 7 LLQAQGVEVPSK KSQREARARAEATLKLLQAQGVEVPSKDSL TLKLLQAQGVEVPSKDSLPKKRPIYEDKKR K L L S K D 1 0 0 0 0 2 1 1 0 0 2 1 0 0 1 1 0 0 0 2 0 0 12 0 1267.7136 Q8N5A0;A0A087WUT6;O60841 Q8N5A0 425 436 EIF5B Eukaryotic translation initiation factor 5B yes no 2 0.001323 73.887 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2462400 0 2462400 2462400 0 2462400 0 0 0 7519 345 7684 27572 41677 41677 1 LLQAVTDLGWSRPTLIQEK DSEALGFEHMGLDPRLLQAVTDLGWSRPTL VTDLGWSRPTLIQEKAIPLALEGKDLLARA R L L E K A 1 1 0 1 0 2 1 1 0 1 4 1 0 0 1 1 2 1 0 1 0 0 19 1 2167.2001 Q9NY93;Q53HB9;G3V0G3;F8WDT8;F8WEI3 Q9NY93 18 36 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 3 0.040732 15.09 1 1.1698 1.9811 NaN 1 Median NaN NaN NaN 0 0 Median 1.1698 1.9811 NaN 1 0 Median 21998000 11271000 10727000 0 0 0 21998000 11271000 10727000 7520 1768 7685 27573 41678 41678 1 LLQDANYNVEK QAGYVGEDIESVIAKLLQDANYNVEKAQQG VIAKLLQDANYNVEKAQQGIVFLDEVDKIG K L L E K A 1 0 2 1 0 1 1 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 11 0 1305.6565 Q9H072;A0A024R5X7;O76031 Q9H072 339 349 DKFZp586J151;CLPX ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial yes no 2 3.7595E-06 85.533 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7521 152 7686 27574 41679 41679 1 LLQDFFNGK IVLVGGSTRIPKIQKLLQDFFNGKELNKSI IPKIQKLLQDFFNGKELNKSINPDEAVAYG K L L G K E 0 0 1 1 0 1 0 1 0 0 2 1 0 2 0 0 0 0 0 0 0 0 9 0 1080.5604 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;Q53HF2;E9PN89;E9PNE6;B4E1Q1;A8K7Q2;Q53FC7;B3KSM6;B2R6X5;P17066;B4DHP5 V9HW22 349 357 HEL-S-72p;HSPA8;HSPA6 Heat shock cognate 71 kDa protein;Heat shock 70 kDa protein 6 no no 2 0.0020521 101.64 5 2 0.57608 0.70988 45.523 5 Median 0.57144 0.70755 3.3752 4 0 Median 1.3134 1.9418 NaN 1 0 Median 74880000 43406000 31474000 65084000 39247000 25837000 9795800 4159100 5636700 7522 1253;701 7687 27575;27576;27577;27578;27579;27580;27581 41680;41681;41682;41683;41684;41685;41686;41687;41688;41689;41690 41686 11 LLQDFFNGR LVLVGGSTRIPKVQKLLQDFFNGRDLNKSI IPKVQKLLQDFFNGRDLNKSINPDEAVAYG K L L G R D 0 1 1 1 0 1 0 1 0 0 2 0 0 2 0 0 0 0 0 0 0 0 9 0 1108.5665 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DI39;B4DWK5;B4DNT8;B4DFN9;B4DVU9;B4E1S9;B4E388;V9GZ37;B3KTT5;B4E1T6;B4DNX1 A8K5I0 349 357 HEL-S-103;HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2 5.4845E-05 129.68 4 2 0.83154 1.1074 43.638 6 Median 0.79072 1.0644 21.632 4 0 Median 1.4893 2.1136 6.9572 2 0 Median 75965000 41688000 34276000 58454000 34823000 23631000 17510000 6864800 10645000 7523 439 7688 27582;27583;27584;27585;27586;27587 41691;41692;41693;41694;41695;41696;41697;41698;41699 41691 9 LLQDFNR DKFKTLSEKNNITQKLLQDFNRFLNTTFSF EKNNITQKLLQDFNRFLNTTFSFFPPFVSC K L L N R F 0 1 1 1 0 1 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 7 0 904.47667 P78527 P78527 2836 2842 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.010496 81.381 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14784000 14784000 0 14784000 14784000 0 0 0 0 7524 1427 7689 27588 41700 41700 1 LLQDLQLGDEEDAR RKKNSGPKAAKKKKRLLQDLQLGDEEDARK RLLQDLQLGDEEDARKRNPKAFAVQSAVRM R L L A R K 1 1 0 3 0 2 2 1 0 0 4 0 0 0 0 0 0 0 0 0 0 0 14 0 1613.7897 Q14692 Q14692 25 38 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 5.725E-10 124.38 3 2 0.85915 1.1365 10.724 5 Median 0.95569 1.3228 10.95 3 0 Median 0.71888 1.1211 1.0617 2 0 Median 80099000 43322000 36777000 28200000 13726000 14474000 51900000 29596000 22303000 7525 1495 7690 27589;27590;27591;27592;27593 41701;41702;41703;41704;41705;41706;41707 41703 7 LLQDLQLGDEEDARK RKKNSGPKAAKKKKRLLQDLQLGDEEDARK LLQDLQLGDEEDARKRNPKAFAVQSAVRMA R L L R K R 1 1 0 3 0 2 2 1 0 0 4 1 0 0 0 0 0 0 0 0 0 0 15 1 1741.8846 Q14692 Q14692 25 39 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 0.0015851 72.417 1 0.83782 1.1375 NaN 1 Median 0.83782 1.1375 NaN 1 0 Median NaN NaN NaN 0 0 Median 5467900 2775300 2692600 5467900 2775300 2692600 0 0 0 7526 1495 7691 27594 41708 41708 1 LLQDSLGGSAHSILIANIAPER QGLPRVPYRDSKLTRLLQDSLGGSAHSILI GSAHSILIANIAPERRFYLDTVSALNFAAR R L L E R R 3 1 1 1 0 1 1 2 1 3 4 0 0 0 1 3 0 0 0 0 0 0 22 0 2274.2332 Q14807;A0A024R632;B7Z9T5;H3BRB3 Q14807 328 349 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 3 4.3228E-17 97.352 3 2 0.73324 1.038 27.274 5 Median 0.75615 1.038 4.2896 3 0 Median 0.55 0.7728 42.866 2 0 Median 42124000 22160000 19964000 22071000 12665000 9405800 20053000 9495000 10558000 7527 1497 7692 27595;27596;27597;27598;27599 41709;41710;41711;41712;41713 41712 5 LLQDSVDFSLADAINTEFK RSSAVRLRSSVPGVRLLQDSVDFSLADAIN SVDFSLADAINTEFKNTRTNEKVELQELND R L L F K N 2 0 1 3 0 1 1 0 0 1 3 1 0 2 0 2 1 0 0 1 0 0 19 0 2125.0579 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;A0A1B0GUA0;A0A1B0GTT5;A0A1B0GVG8 V9HWE1 79 97 HEL113;VIM Vimentin yes no 2 1.1238E-72 236.05 4 1 0.82362 1.0859 45.377 5 Median 0.83135 1.0964 51.983 4 0 Median 0.63037 0.98133 NaN 1 0 Median 604780000 325640000 279150000 571810000 306070000 265740000 32970000 19566000 13404000 7528 1245 7693 27600;27601;27602;27603;27604 41714;41715;41716;41717;41718;41719;41720;41721;41722;41723 41715 10 LLQEALK LLYKAEGVKIRDDERLLQEALKRKEKRRAQ VKIRDDERLLQEALKRKEKRRAQRQRRWEK R L L L K R 1 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 813.496 B3KNS8;O75683 B3KNS8 288 294 SURF6 Surfeit locus protein 6 yes no 2 0.012422 114.19 3 0.97707 1.2258 17.628 3 Median 0.97707 1.2258 17.628 3 0 Median NaN NaN NaN 0 0 Median 48524000 21885000 26639000 48524000 21885000 26639000 0 0 0 7529 760 7694 27605;27606;27607 41724;41725;41726 41724 3 LLQEAPGK TRQAPESPWEEQLARLLQEAPGKLSLDVEQ WEEQLARLLQEAPGKLSLDVEQAPSGQHSQ R L L G K L 1 0 0 0 0 1 1 1 0 0 2 1 0 0 1 0 0 0 0 0 0 0 8 0 854.48617 B4DZE5;O00411;Q59E91;K7EMH3 B4DZE5 194 201 POLRMT DNA-directed RNA polymerase, mitochondrial;DNA-directed RNA polymerase yes no 2 0.026235 53.554 1 0.63115 0.79922 NaN 1 Median 0.63115 0.79922 NaN 1 0 Median NaN NaN NaN 0 0 Median 1600600 1035800 564810 1600600 1035800 564810 0 0 0 7530 876 7695 27608 41727 41727 1 LLQFPELR AAPYFQQLRQTTAPRLLQFPELRLVQFDSG RQTTAPRLLQFPELRLVQFDSGKLEALAIL R L L L R L 0 1 0 0 0 1 1 0 0 0 3 0 0 1 1 0 0 0 0 0 0 0 8 0 1014.5862 Q96L91 Q96L91 1884 1891 EP400 E1A-binding protein p400 yes yes 2 0.011812 99.375 2 0.56246 0.76285 24.383 2 Median 0.56246 0.76285 24.383 2 0 Median NaN NaN NaN 0 0 Median 3392800 2095100 1297700 3392800 2095100 1297700 0 0 0 7531 1692 7696 27609;27610 41728;41729;41730;41731 41728 4 LLQFYAETCPAPER ISGESGAGKTEATKRLLQFYAETCPAPERG RLLQFYAETCPAPERGGAVRDRLLQSNPVL R L L E R G 2 1 0 0 1 1 2 0 0 0 2 0 0 1 2 0 1 0 1 0 0 0 14 0 1693.8134 F5H6E2;B7Z3E5;O00159;B7Z9C0;I3L204;I3L4D4;I3L501;I3L3Y6;I3L168;I3L3F5 F5H6E2 129 142 MYO1C Unconventional myosin-Ic yes no 2 5.821E-10 109.72 3 0.56369 0.77133 36.383 2 Median 0.56369 0.77133 36.383 2 0 Median NaN NaN NaN 0 0 Median 20223000 14389000 5834100 20223000 14389000 5834100 0 0 0 7532 905 7697 27611;27612;27613 41732;41733;41734 41734 3 LLQIIER ALKLNSNEARLKFPRLLQIIERYPEETLSL EARLKFPRLLQIIERYPEETLSLMTKEISS R L L E R Y 0 1 0 0 0 1 1 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 7 0 883.5491 P78527 P78527 3468 3474 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.037348 55.676 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7533 1427 7698 27614 41735 41735 1 LLQLTEK LLARKHYASEEIKEKLLQLTEKRKEMIDKW ASEEIKEKLLQLTEKRKEMIDKWEDRWEWL K L L E K R 0 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 7 0 843.50657 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24 B2ZZ89 1992 1998 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.014596 94.262 3 0.86763 1.1104 23.275 3 Median 0.86763 1.1104 23.275 3 0 Median NaN NaN NaN 0 0 Median 37665000 19252000 18412000 37665000 19252000 18412000 0 0 0 7534 346 7699 27615;27616;27617 41736;41737;41738 41738 3 LLQLVEDR LISVLREANQAINPKLLQLVEDRGSGRTRG NQAINPKLLQLVEDRGSGRTRGRGGMKDDR K L L D R G 0 1 0 1 0 1 1 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 8 0 984.5604 B4DN41;J3KTA4;B5BUE6;P17844;B4DNG2 B4DN41 460 467 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2 2.5729E-05 138.9 4 2 0.42043 0.56266 81.483 5 Median 0.41533 0.55358 0.95525 3 0 Median 1.6355 2.4627 3.1982 2 0 Median 119720000 76137000 43581000 86603000 63363000 23239000 33116000 12774000 20342000 7535 833 7700 27618;27619;27620;27621;27622;27623 41739;41740;41741;41742;41743;41744;41745 41742 7 LLQMQDEGR FTFMNDSSNVAMLQRLLQMQDEGRRQPRPG VAMLQRLLQMQDEGRRQPRPGGRDHMEALR R L L G R R 0 1 0 1 0 2 1 1 0 0 2 0 1 0 0 0 0 0 0 0 0 0 9 0 1088.5284 Q8IZY2 Q8IZY2 351 359 ABCA7 ATP-binding cassette sub-family A member 7 yes yes 2 0.0033908 79.116 2 0.74436 1.004 11.741 2 Median 0.74436 1.004 11.741 2 0 Median NaN NaN NaN 0 0 Median 22806000 14229000 8576700 22806000 14229000 8576700 0 0 0 7536 1632 7701 27624;27625 41746;41747 41747 2 LLQQEEEIK ______________________________ SECSARLLQQEEEIKSLTAEIDRLKNCGCL R L L I K S 0 0 0 0 0 2 3 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1128.6027 P54136;E5RJM9;E5RH09 P54136 12 20 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 4.8331E-06 160.63 2 0.51329 0.64692 13.218 2 Median 0.51329 0.64692 13.218 2 0 Median NaN NaN NaN 0 0 Median 20505000 13265000 7240400 20505000 13265000 7240400 0 0 0 7537 1373 7702 27626;27627 41748;41749;41750 41748 3 LLQQGTAPAQAK AFVKALQQEQEIEQRLLQQGTAPAQAKAEP EQRLLQQGTAPAQAKAEPTAAPHPVLKQVI R L L A K A 3 0 0 0 0 3 0 1 0 0 2 1 0 0 1 0 1 0 0 0 0 0 12 0 1224.6826 A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7;B4E0Q6 A0A024R7K7 476 487 GATAD2A Transcriptional repressor p66-alpha yes no 2 2.3245E-10 133.99 3 1 0.80569 1.0146 8.6144 3 Median 0.80569 1.0146 8.6144 3 0 Median NaN NaN NaN 0 0 Median 38820000 25706000 13114000 29621000 16506000 13114000 9199700 9199700 0 7538 179 7703 27628;27629;27630;27631 41751;41752;41753;41754;41755;41756;41757 41755 7 LLQQLFLK EAYSLSDNDYDGIKKLLQQLFLKAPVNTAE DYDGIKKLLQQLFLKAPVNTAELTDLLIQQ K L L L K A 0 0 0 0 0 2 0 0 0 0 4 1 0 1 0 0 0 0 0 0 0 0 8 0 1001.6274 Q9P287;B4DUS0;B4E318 Q9P287 77 84 BCCIP BRCA2 and CDKN1A-interacting protein yes no 2 0.0071103 106.42 2 2 1.6726 2.244 59.908 4 Median 0.98768 1.2366 34.74 2 0 Median 2.3039 3.2843 4.3383 2 0 Median 20720000 8392400 12328000 11232000 5793600 5438000 9488800 2598800 6889900 7539 1779 7704 27632;27633;27634;27635 41758;41759;41760;41761 41758 4 LLQQLR VTGQAFEDMQEQNGRLLQQLREKDDANFKL EDMQEQNGRLLQQLREKDDANFKLMSERIK R L L L R E 0 1 0 0 0 2 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 6 0 769.48102 B4DMM1;A0A0S2Z4Z2;H3BP71;A8K6K1;A0A0S2Z537;A0A024QZG0;O75150;B4E313;B4DEN2;B4DFU2 B4DMM1 467 472 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 2 0.034682 105.82 5 1 0.82028 1.1315 6.8629 6 Median 0.82788 1.1228 7.0996 5 0 Median 0.74471 1.2019 NaN 1 0 Median 465570000 250950000 214630000 426510000 228250000 198260000 39060000 22692000 16368000 7540 13 7705 27636;27637;27638;27639;27640;27641 41762;41763;41764;41765;41766;41767 41764 6 LLQQQNDITGLSR LLQQLENVTKERQMKLLQQQNDITGLSRQV MKLLQQQNDITGLSRQVKHVMNFTNWAIAS K L L S R Q 0 1 1 1 0 3 0 1 0 1 3 0 0 0 0 1 1 0 0 0 0 0 13 0 1484.7947 H0Y612;A0A024R0F6;Q9UPN9;B3KN30 H0Y612 132 144 TRIM33 E3 ubiquitin-protein ligase TRIM33 yes no 2 5.8889E-09 116.77 2 1 0.64375 0.90272 30.049 3 Median 0.63292 0.87464 4.4691 2 0 Median 1.1373 1.4676 NaN 1 0 Median 7701600 4391300 3310300 5341400 3139400 2202000 2360200 1251900 1108300 7541 34 7706 27642;27643;27644 41768;41769;41770;41771 41770 4 LLQSLLDTR EHKQRPKVELMPRMRLLQSLLDTRCVYILD LMPRMRLLQSLLDTRCVYILDCWSDVFIWL R L L T R C 0 1 0 1 0 1 0 0 0 0 4 0 0 0 0 1 1 0 0 0 0 0 9 0 1057.6132 B4DIX0;Q13045 B4DIX0 734 742 FLII Protein flightless-1 homolog yes no 2 0.0042752 76.064 1 0.77112 1.0442 NaN 1 Median 0.77112 1.0442 NaN 1 0 Median NaN NaN NaN 0 0 Median 8735600 5077100 3658500 8735600 5077100 3658500 0 0 0 7542 812 7707 27645 41772 41772 1 LLQSNPVLEAFGNAK ETCPAPERGGAVRDRLLQSNPVLEAFGNAK LLQSNPVLEAFGNAKTLRNDNSSRFGKYMD R L L A K T 2 0 2 0 0 1 1 1 0 0 3 1 0 1 1 1 0 0 0 1 0 0 15 0 1599.8621 F5H6E2;B7Z3E5;O00159;B7Z9C0;I3L204;I3L4D4;I3L501;I3L3Y6 F5H6E2 150 164 MYO1C Unconventional myosin-Ic yes no 2 1.974E-87 259.18 2 2 0.70536 0.87275 0.89105 2 Median 0.70536 0.87275 0.89105 2 0 Median NaN NaN NaN 0 0 Median 53939000 24254000 29685000 41739000 24254000 17485000 12199000 0 12199000 7543 905 7708 27646;27647;27648;27649 41773;41774;41775;41776;41777;41778 41774 6 LLQTAATAAQQGGQANHPTAAVVTEK EIARIVARCLWEESRLLQTAATAAQQGGQA GGQANHPTAAVVTEKQQMLEQHLQDVRKRV R L L E K Q 7 0 1 0 0 4 1 2 1 0 2 1 0 0 1 0 4 0 0 2 0 0 26 0 2575.3354 G8JLH9;B4DNP0;B7ZA24;B4DVR6;B5BTZ6;P40763 G8JLH9 17 42 STAT3 Signal transducer and activator of transcription;Signal transducer and activator of transcription 3 yes no 3 6.7505E-16 121.65 4 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11894000 9346100 2548100 9346100 9346100 0 2548100 0 2548100 7544 840 7709 27650;27651;27652;27653;27654 41779;41780;41781;41782;41783;41784;41785 41782 7 LLQVASPFLEPHLVR IALYNWLIQVDLADKLLQVASPFLEPHLVR LLQVASPFLEPHLVRMAKVDQNRVRYMDLL K L L V R M 1 1 0 0 0 1 1 0 1 0 4 0 0 1 2 1 0 0 0 2 0 0 15 0 1717.9879 B4DLT2;A0A024R071;O75694;E9PF10;B3KMK3 B4DLT2 1014 1028 NUP155 Nuclear pore complex protein Nup155 yes no 3 5.2795E-05 98.253 4 0.33055 0.44127 8.0092 4 Median 0.33055 0.44127 8.0092 4 0 Median NaN NaN NaN 0 0 Median 42845000 31732000 11113000 42845000 31732000 11113000 0 0 0 7545 29 7710 27655;27656;27657;27658 41786;41787;41788;41789;41790;41791;41792;41793 41790 8 LLQVVEEPQALAAFLR VWSEKGQVEVFALRRLLQVVEEPQALAAFL LQVVEEPQALAAFLRDEQAQMKPIFSFAGH R L L L R D 3 1 0 0 0 2 2 0 0 0 4 0 0 1 1 0 0 0 0 2 0 0 16 0 1796.0196 Q8TCJ8;Q8NCK5;B2RDP6;Q9BQ67;M0QX71 Q8TCJ8 183 198 DKFZp564C172;GRWD1 Glutamate-rich WD repeat-containing protein 1 yes no 2 4.1375E-08 123.26 2 0.57072 0.76056 0.51211 2 Median 0.57072 0.76056 0.51211 2 0 Median NaN NaN NaN 0 0 Median 14736000 8988800 5746800 14736000 8988800 5746800 0 0 0 7546 739 7711 27659;27660 41794;41795;41796;41797;41798;41799 41795 6 LLRDYQELMNTK DLEDALQQAKEDLARLLRDYQELMNTKLAL LARLLRDYQELMNTKLALDLEIATYRTLLE R L L T K L 0 1 1 1 0 1 1 0 0 0 3 1 1 0 0 0 1 0 1 0 0 0 12 1 1522.7814 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 461 472 KRT1 Keratin, type II cytoskeletal 1 no no 3 0.0062776 43.761 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7563800 7563800 0 7563800 7563800 0 0 0 0 + 7547 1113;1114 7712 27661 41800 41800 1 LLREELQLLQEQGSYVGEVVR RRLQAQRNELNAKVRLLREELQLLQEQGSY QLLQEQGSYVGEVVRAMDKKKVLVKVHPEG R L L V R A 0 2 0 0 0 3 4 2 0 0 5 0 0 0 0 1 0 0 1 3 0 0 21 1 2457.3227 Q59GS3;A0A140VJS3;P62195;J3QLH6;J3KRP2;J3QSA9;J3QQM1;J3QSE0 Q59GS3 54 74 PSMC5 26S protease regulatory subunit 8 yes no 3 2.4272E-23 104.06 1 0.41587 0.54913 NaN 1 Median 0.41587 0.54913 NaN 1 0 Median NaN NaN NaN 0 0 Median 12505000 8943800 3561000 12505000 8943800 3561000 0 0 0 7548 503 7713 27662 41801 41801 1 LLREPGLLAVQGLPEGLAFR EALGRASVVPLPYERLLREPGLLAVQGLPE GLLAVQGLPEGLAFRRPAEYDPKALMAILE R L L F R R 2 2 0 0 0 1 2 3 0 0 6 0 0 1 2 0 0 0 0 1 0 0 20 1 2148.2419 Q75MX6;E9PFE2;Q59FS0;Q9UHL9 Q75MX6 157 176 GTF2IRD1 General transcription factor II-I repeat domain-containing protein 1 yes no 3 0.00094217 34.346 1 1 1.3443 1.7621 20.328 2 Median 1.2121 1.5261 NaN 1 0 Median 1.491 2.0344 NaN 1 0 Median 9891000 3756100 6134900 3051400 993290 2058100 6839700 2762800 4076800 7549 1024 7714 27663;27664 41802;41803;41804 41803 3 LLSDFLDSEVSELR SKEVEETATAKNVLKLLSDFLDSEVSELRT KLLSDFLDSEVSELRTGAAEGLAKLMFSGL K L L L R T 0 1 0 2 0 0 2 0 0 0 4 0 0 1 0 3 0 0 0 1 0 0 14 0 1621.8199 Q9BPX3;Q6NUR1 Q9BPX3 695 708 NCAPG Condensin complex subunit 3 yes no 2 1.6432E-73 249.83 6 4 0.66647 0.92307 26.576 9 Median 0.69371 0.95178 17.993 5 0 Median 0.45408 0.7239 20.542 4 0 Median 1125800000 694410000 431430000 518100000 308200000 209900000 607740000 386200000 221530000 7550 1706 7715 27665;27666;27667;27668;27669;27670;27671;27672;27673;27674 41805;41806;41807;41808;41809;41810;41811;41812;41813;41814;41815;41816;41817;41818;41819 41806 14 LLSEEVFDFSSGQITQVK RTSESLCQNNMVILKLLSEEVFDFSSGQIT EEVFDFSSGQITQVKSKHLKDSMCNEFSQI K L L V K S 0 0 0 1 0 2 2 1 0 1 2 1 0 2 0 3 1 0 0 2 0 0 18 0 2026.0259 O14980 O14980 173 190 XPO1 Exportin-1 yes yes 2 0.031215 32.624 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1909100 1909100 0 1909100 1909100 0 0 0 0 7551 1174 7716 27675 41820 41820 1 LLSEGVCTNDNIPSVSSINR KRECPSIFAWEIRDRLLSEGVCTNDNIPSV VCTNDNIPSVSSINRVLRNLASEKQQMGAD R L L N R V 0 1 3 1 1 0 1 1 0 2 2 0 0 0 1 4 1 0 0 2 0 0 20 0 2174.0637 Q59GD2;D1KF47;Q66SS1;B3KQG1;F1T0F8;D3DQZ8;P26367 Q59GD2 69 88 PAX6 Paired box protein Pax-6 yes no 2 2.0132E-15 126.71 2 0.67928 0.95107 13.854 2 Median 0.67928 0.95107 13.854 2 0 Median NaN NaN NaN 0 0 Median 6509400 4287500 2221800 6509400 4287500 2221800 0 0 0 7552 770 7717 27676;27677 41821;41822;41823 41821 3 LLSGGSVLDIIK YTSFVVKDELWLVMKLLSGGSVLDIIKHIV VMKLLSGGSVLDIIKHIVAKGEHKSGVLDE K L L I K H 0 0 0 1 0 0 0 2 0 2 3 1 0 0 0 2 0 0 0 1 0 0 12 0 1213.7282 A0A024R2M7;O95747;C9JIG9 A0A024R2M7 94 105 OXSR1 Serine/threonine-protein kinase OSR1 yes no 2 7.8577E-06 94.297 1 0.47937 0.60755 NaN 1 Median 0.47937 0.60755 NaN 1 0 Median NaN NaN NaN 0 0 Median 10437000 7163000 3273800 10437000 7163000 3273800 0 0 0 7553 88 7718 27678 41824;41825 41825 2 LLSGSLDR HKTVTCLCLSSSGQRLLSGSLDRKVKVYST LSSSGQRLLSGSLDRKVKVYSTTSYKVVHS R L L D R K 0 1 0 1 0 0 0 1 0 0 3 0 0 0 0 2 0 0 0 0 0 0 8 0 859.47633 Q8TED0;H0Y8P4 Q8TED0 263 270 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 0.028273 52.482 1 0.60187 0.90255 NaN 1 Median NaN NaN NaN 0 0 Median 0.60187 0.90255 NaN 1 0 Median 15624000 9184600 6439200 0 0 0 15624000 9184600 6439200 7554 1660 7719 27679 41826 41826 1 LLSGSLDRK HKTVTCLCLSSSGQRLLSGSLDRKVKVYST SSSGQRLLSGSLDRKVKVYSTTSYKVVHSF R L L R K V 0 1 0 1 0 0 0 1 0 0 3 1 0 0 0 2 0 0 0 0 0 0 9 1 987.57129 Q8TED0;H0Y8P4 Q8TED0 263 271 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 3 0.030066 52.579 1 0.8694 1.1554 NaN 1 Median 0.8694 1.1554 NaN 1 0 Median NaN NaN NaN 0 0 Median 12711000 6887000 5823600 12711000 6887000 5823600 0 0 0 7555 1660 7720 27680 41827 41827 1 LLSISGK EEDAESEDEEEEDVKLLSISGKRSAPGGGS DEEEEDVKLLSISGKRSAPGGGSKVPQKKV K L L G K R 0 0 0 0 0 0 0 1 0 1 2 1 0 0 0 2 0 0 0 0 0 0 7 0 716.44324 A0A0S2Z4G7;A0A0S2Z491;P06748;A0A140VJQ2;A4ZU86;Q9BTI9;E5RI98;V9HVU7;A0A024RAP1;Q9NX34 A0A0S2Z4G7 135 141 NPM1;CLEC2D Nucleophosmin no no 2 0.0037702 126.24 5 2 0.72695 0.95149 27.271 6 Median 0.63258 0.8267 14.547 4 0 Median 0.89072 1.4088 2.4432 2 0 Median 1604800000 934670000 670150000 1372700000 818550000 554110000 232160000 116120000 116040000 7556 462;1765 7721 27681;27682;27683;27684;27685;27686;27687 41828;41829;41830;41831;41832;41833;41834;41835;41836;41837;41838;41839;41840;41841 41831 14 LLSISGKR EEDAESEDEEEEDVKLLSISGKRSAPGGGS EEEEDVKLLSISGKRSAPGGGSKVPQKKVK K L L K R S 0 1 0 0 0 0 0 1 0 1 2 1 0 0 0 2 0 0 0 0 0 0 8 1 872.54435 A0A0S2Z4G7;A0A0S2Z491;P06748;A0A140VJQ2;A4ZU86;Q9BTI9;E5RI98;Q9NX34 A0A0S2Z4G7 135 142 NPM1 Nucleophosmin no no 2 0.017736 65.252 1 0.38313 0.57756 NaN 1 Median NaN NaN NaN 0 0 Median 0.38313 0.57756 NaN 1 0 Median 5073600 3843000 1230700 0 0 0 5073600 3843000 1230700 7557 462;1765 7722 27688 41842 41842 1 LLSITVR ILQSTRLPLISGFYKLLSITVRNAKKIKYF PLISGFYKLLSITVRNAKKIKYFEGVSPKS K L L V R N 0 1 0 0 0 0 0 0 0 1 2 0 0 0 0 1 1 0 0 1 0 0 7 0 800.51199 P78527;B4DL41 P78527 669 675 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.015426 97.071 4 0.40961 0.54561 5.739 3 Median 0.40961 0.54561 5.739 3 0 Median NaN NaN NaN 0 0 Median 50218000 35606000 14613000 50218000 35606000 14613000 0 0 0 7558 1427 7723 27689;27690;27691;27692 41843;41844;41845;41846 41846 4 LLSLDR PLQKLSSMDPAMLERLLSLDRLLASQGSQG SMDPAMLERLLSLDRLLASQGSQGAPLLST R L L D R L 0 1 0 1 0 0 0 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 6 0 715.42284 Q14807;A0A024R632;B7Z9T5;H3BRB3 Q14807 443 448 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 0.024573 122.5 2 0.82664 1.1394 28.398 2 Median 0.82664 1.1394 28.398 2 0 Median NaN NaN NaN 0 0 Median 13078000 7374400 5703500 13078000 7374400 5703500 0 0 0 7559 1497 7724 27693;27694 41847;41848 41847 2 LLSLISIALPENK PVIRRSSLLTEKLLRLLSLISIALPENKVS LRLLSLISIALPENKVSEAQANSGSGASST R L L N K V 1 0 1 0 0 0 1 0 0 2 4 1 0 0 1 2 0 0 0 0 0 0 13 0 1409.8494 Q5H924;A0A024R9Y3;A0A024R9U8;A0A024R9W5;Q7Z6Z7;Q5H935;H0Y659 Q5H924 2489 2501 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 2 0.00034264 123.79 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 375230 375230 0 375230 375230 0 0 0 0 7560 231 7725 27695;27696 41849;41850 41850 2 LLSLQR IARVVKKKTGEFSDKLLSLQRGLREFQGKL KKTGEFSDKLLSLQRGLREFQGKLLRDLEY K L L Q R G 0 1 0 0 0 1 0 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 6 0 728.45447 A0A024RCP3;Q12899 A0A024RCP3 290 295 TRIM26 Tripartite motif-containing protein 26 yes no 2 0.03499 87.839 1 0.51937 0.69033 NaN 1 Median 0.51937 0.69033 NaN 1 0 Median NaN NaN NaN 0 0 Median 15635000 9725300 5909500 15635000 9725300 5909500 0 0 0 7561 299 7726 27697 41851 41851 1 LLSPGAR ELGAYCGYSAVRMARLLSPGARLITIEINP YSAVRMARLLSPGARLITIEINPDCAAITQ R L L A R L 1 1 0 0 0 0 0 1 0 0 2 0 0 0 1 1 0 0 0 0 0 0 7 0 712.42317 A0A140VJG8;P21964;B8XPJ7;E7EMS6;B8XPJ8;E7EUU8;F8WBW9;A0A1S6YJG6 A0A140VJG8 129 135 COMT Catechol O-methyltransferase yes no 2 0.0099896 82.263 2 0.36488 0.49922 NaN 1 Median 0.36488 0.49922 NaN 1 0 Median NaN NaN NaN 0 0 Median 14680000 11193000 3487400 14680000 11193000 3487400 0 0 0 7562 495 7727 27698;27699 41852;41853 41853 2 LLSPVVPQISAPQSNK DLAKNADKVLELMNKLLSPVVPQISAPQSN LSPVVPQISAPQSNKERLKNMALSIAERYR K L L N K E 1 0 1 0 0 2 0 0 0 1 2 1 0 0 3 3 0 0 0 2 0 0 16 0 1676.9461 H3BVG0;Q8N1F7;A8K897;H3BVE2;H3BRD9 H3BVG0 645 660 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.0018259 86.772 4 0.25524 0.32626 21.742 2 Median 0.25524 0.32626 21.742 2 0 Median NaN NaN NaN 0 0 Median 17235000 15094000 2141800 17235000 15094000 2141800 0 0 0 7563 1111 7728 27700;27701;27702;27703 41854;41855;41856;41857 41857 4 LLSRPQDALEGVVLSPSLEAR TVLEALRHPIQVSRRLLSRPQDALEGVVLS DALEGVVLSPSLEARVRDIAIATRNTKKNR R L L A R V 2 2 0 1 0 1 2 1 0 0 5 0 0 0 2 3 0 0 0 2 0 0 21 1 2249.2379 Q9NVI7 Q9NVI7 355 375 ATAD3A ATPase family AAA domain-containing protein 3A no no 3 1.7556E-08 101.48 3 0.42977 0.5685 4.7211 3 Plateau 0.42977 0.5685 4.7211 3 0 Plateau NaN NaN NaN 0 0 Median 22382000 14416000 7966000 22382000 14416000 7966000 0 0 0 7564 1763 7729 27704;27705;27706 41858;41859;41860;41861;41862;41863 41860 6 LLSRPQDVLEGVVLSPSLEAR TVLEALRHPIQVSRRLLSRPQDVLEGVVLS DVLEGVVLSPSLEARVRDIAIATRNTKKNR R L L A R V 1 2 0 1 0 1 2 1 0 0 5 0 0 0 2 3 0 0 0 3 0 0 21 1 2277.2692 Q5T9A4;Q9H834 Q5T9A4 307 327 ATAD3B ATPase family AAA domain-containing protein 3B no no 3 0.0008745 80.382 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1978300 1978300 0 1978300 1978300 0 0 0 0 7565 1573 7730 27707;27708 41864;41865;41866 41866 3 LLSSFDFFLTDAR QTLKKEYKSYEAKLRLLSSFDFFLTDARIR LRLLSSFDFFLTDARIRRLLPSLIGRHFYQ R L L A R I 1 1 0 2 0 0 0 0 0 0 3 0 0 3 0 2 1 0 0 0 0 0 13 0 1530.7718 O76021;Q32Q62;J3QSV6;A0PJ61;A0PJ87;I3L3U9;I3L3C4;I3L234 O76021 148 160 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 1.0218E-33 218.11 9 3 0.63016 0.86488 34.028 7 Median 0.66048 0.91514 4.0599 4 0 Median 0.38171 0.58964 24.519 3 0 Plateau 1012200000 618740000 393440000 963730000 585220000 378510000 48450000 33516000 14934000 7566 1210 7731 27709;27710;27711;27712;27713;27714;27715;27716;27717;27718;27719;27720 41867;41868;41869;41870;41871;41872;41873;41874;41875;41876;41877;41878;41879;41880;41881;41882;41883 41870 17 LLSTCGLVQSVELQEKPDLAESPK VLNVPPYCTEESLSRLLSTCGLVQSVELQE SVELQEKPDLAESPKESRSKFFHPKPVPGF R L L P K E 1 0 0 1 1 2 3 1 0 0 5 2 0 0 2 3 1 0 0 2 0 0 24 1 2640.368 Q9Y3A4 Q9Y3A4 78 101 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 3 4.0395E-37 152.06 4 2 0.95233 1.2334 9.1531 6 Median 1.0201 1.2509 7.5524 4 0 Median 0.701 1.1306 12.347 2 0 Median 330060000 169670000 160390000 206140000 99148000 107000000 123910000 70519000 53396000 7567 1815 7732 27721;27722;27723;27724;27725;27726 41884;41885;41886;41887;41888;41889;41890;41891;41892;41893;41894;41895;41896 41889 13 LLSTLGEFLEDHFPLPDR ELKTKMLNIKEYKEKLLSTLGEFLEDHFPL TLGEFLEDHFPLPDRSVKKKKKNIQESSVN K L L D R S 0 1 0 2 0 0 2 1 1 0 5 0 0 2 2 1 1 0 0 0 0 0 18 0 2098.0735 D6RHD3;Q9BS16;D6RJF0 D6RHD3 146 163 CENPK Centromere protein K yes no 3 0.00035245 79.311 2 0.72932 0.98257 62.969 2 Median 0.72932 0.98257 62.969 2 0 Median NaN NaN NaN 0 0 Median 13018000 8534800 4483500 13018000 8534800 4483500 0 0 0 7568 996 7733 27727;27728 41897;41898;41899 41897 3 LLSVEGSTLR NAQVTTENQLKYLTRLLSVEGSTLREALTH KYLTRLLSVEGSTLREALTHRKIIAKGEEL R L L L R E 0 1 0 0 0 0 1 1 0 0 3 0 0 0 0 2 1 0 0 1 0 0 10 0 1073.6081 F5H6E2;B7Z3E5;O00159;D3DTH7;B7Z9C0 F5H6E2 317 326 MYO1C Unconventional myosin-Ic yes no 2 0.00010467 113.62 4 2 0.70437 0.94807 67.523 4 Median 0.67901 0.92238 3.4509 3 0 Median 2.5133 3.6107 NaN 1 0 Median 143470000 69374000 74097000 119290000 65736000 53554000 24181000 3638300 20543000 7569 905 7734 27729;27730;27731;27732;27733;27734 41900;41901;41902;41903;41904;41905;41906;41907 41903 8 LLSVNIR DKEALIAKCNDYRRRLLSVNIRVRADLRDN KCNDYRRRLLSVNIRVRADLRDNYSPGWKF R L L I R V 0 1 1 0 0 0 0 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 7 0 813.50724 P07814;B4DP50 P07814 1334 1340 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.019508 77.748 1 0.52166 0.68983 NaN 1 Median 0.52166 0.68983 NaN 1 0 Median NaN NaN NaN 0 0 Median 10330000 6197000 4133400 10330000 6197000 4133400 0 0 0 7570 1242 7735 27735 41908;41909 41908 2 LLSYASYCIEHGDLELAAK KPPPELCPEDINTFKLLSYASYCIEHGDLE ASYCIEHGDLELAAKFVNQLKGESRRVAQD K L L A K F 3 0 0 1 1 0 2 1 1 1 4 1 0 0 0 2 0 0 2 0 0 0 19 0 2152.0511 B4DS66;C9J406;H7C463;Q16891;B9A067;B4DQY2;B4DKR1;B4DT20;Q3B7X4;A0A087WYS0 Q16891 690 708 IMMT MICOS complex subunit MIC60 no no 3 7.9168E-06 98.227 3 0.44185 0.5704 6.2892 3 Median 0.44185 0.5704 6.2892 3 0 Median NaN NaN NaN 0 0 Median 22516000 15336000 7180100 22516000 15336000 7180100 0 0 0 7571 1524;854 7736 27736;27737;27738 41910;41911;41912;41913 41911 4 LLTHNLLSSHVR ______________________________ ______________________________ K L L V R G 0 1 1 0 0 0 0 0 2 0 4 0 0 0 0 2 1 0 0 1 0 0 12 0 1388.7888 F5GX77;A0A024R565;Q9UI30 F5GX77 3 14 TRMT112;HSPC152 Multifunctional methyltransferase subunit TRM112-like protein yes no 4 0.0030024 69.216 2 0.36469 0.51356 NaN 1 Median 0.36469 0.51356 NaN 1 0 Median NaN NaN NaN 0 0 Median 9309400 8201400 1108000 9309400 8201400 1108000 0 0 0 7572 134 7737 27739;27740 41914;41915 41914 2 LLTLEVPGVTESRPSVLR ESVPMTWDPVDQNPRLLTLEVPGVTESRPS LEVPGVTESRPSVLRGDHLFALLSSETHQE R L L L R G 0 2 0 0 0 0 2 1 0 0 4 0 0 0 2 2 2 0 0 3 0 0 18 1 1965.1259 B7Z700;Q5JR04;Q9HCE1;Q9H8T8 B7Z700 314 331 MOV10 Putative helicase MOV-10 yes no 3 0.0014768 65.511 3 2 0.99635 1.4037 16.019 5 Median 0.89065 1.2122 14.413 3 0 Median 1.0566 1.5592 14.855 2 0 Median 52629000 26504000 26125000 21405000 11788000 9616900 31224000 14716000 16508000 7573 916 7738 27741;27742;27743;27744;27745 41916;41917;41918;41919;41920 41916 5 LLTLPNGER PEWVENLNSVLDDNKLLTLPNGERLSLPPN VLDDNKLLTLPNGERLSLPPNVRIMFEVQD K L L E R L 0 1 1 0 0 0 1 1 0 0 3 0 0 0 1 0 1 0 0 0 0 0 9 0 1011.5713 Q14204 Q14204 2324 2332 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.019702 52.716 1 2.2879 2.9396 NaN 1 Median NaN NaN NaN 0 0 Median 2.2879 2.9396 NaN 1 0 Median 2251700 745580 1506100 0 0 0 2251700 745580 1506100 7574 1483 7739 27746 41921 41921 1 LLTNFLPLK ENDRILVAQGGLGGKLLTNFLPLKGQKRII GGLGGKLLTNFLPLKGQKRIIHLDLKLIAD K L L L K G 0 0 1 0 0 0 0 0 0 0 4 1 0 1 1 0 1 0 0 0 0 0 9 0 1057.6536 A4D1E9;C9J8R7;C9JNI1 A4D1E9 127 135 GTPBP10 GTP-binding protein 10 yes no 2 0.05042 73.665 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1324900 1324900 0 1324900 1324900 0 0 0 0 7575 548 7740 27747 41922 41922 1 LLTQGFTNWNK EAESLNDEELEEKEKLLTQGFTNWNKRDFN EKEKLLTQGFTNWNKRDFNQFIKANEKWGR K L L N K R 0 0 2 0 0 1 0 1 0 0 2 1 0 1 0 0 2 1 0 0 0 0 11 0 1320.6826 O60264;B7ZAX9;B4DZC0 O60264 837 847 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 8.0746E-06 105.4 2 2.1905 3.311 1.5286 2 Median NaN NaN NaN 0 0 Median 2.1905 3.311 1.5286 2 0 Median 30703000 9718900 20984000 0 0 0 30703000 9718900 20984000 7576 1189 7741 27748;27749 41923;41924;41925;41926 41924 4 LLTQHENIK IASEDMPNTLTEAEKLLTQHENIKNEIDNY LTEAEKLLTQHENIKNEIDNYEEDYQKMRD K L L I K N 0 0 1 0 0 1 1 0 1 1 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1094.6084 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24 B2ZZ89 1100 1108 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 0.0060966 109.48 2 0.74269 0.94372 NaN 1 Median 0.74269 0.94372 NaN 1 0 Median NaN NaN NaN 0 0 Median 8127600 3184200 4943400 8127600 3184200 4943400 0 0 0 7577 346 7742 27750;27751 41927;41928;41929 41928 3 LLTSFLPAQLLR ATGNRWCSWSLSQARLLTSFLPAQLLRLYQ QARLLTSFLPAQLLRLYQLMLFTLPGTPVF R L L L R L 1 1 0 0 0 1 0 0 0 0 5 0 0 1 1 1 1 0 0 0 0 0 12 0 1370.8286 B4E2Z3;F5GZS6;J3KPF3;P08195;A0A024R599;H0YFX4 B4E2Z3 321 332 SLC3A2 4F2 cell-surface antigen heavy chain yes no 2 0.00064087 97.965 4 0.88398 1.2282 12.916 4 Median 0.88398 1.2282 12.916 4 0 Median NaN NaN NaN 0 0 Median 11958000 6178700 5778800 11958000 6178700 5778800 0 0 0 7578 889 7743 27752;27753;27754;27755 41930;41931;41932;41933;41934;41935;41936;41937 41936 8 LLTSQCGAAEEEFVQR LSDLDYMQFIRLLEKLLTSQCGAAEEEFVQ LTSQCGAAEEEFVQRFRRSVTLESKKQLIE K L L Q R F 2 1 0 0 1 2 3 1 0 0 2 0 0 1 0 1 1 0 0 1 0 0 16 0 1836.8676 Q86WV4;P82933 Q86WV4 134 149 MRPS9 28S ribosomal protein S9, mitochondrial yes no 2 0.0008841 46.706 2 0.63424 0.8982 NaN 1 Median 0.63424 0.8982 NaN 1 0 Median NaN NaN NaN 0 0 Median 7919100 6278900 1640200 7919100 6278900 1640200 0 0 0 7579 1431 7744 27756;27757 41938;41939 41938 2 LLTSYGFIQCSER NGTSAALRETGVIVKLLTSYGFIQCSERQA VKLLTSYGFIQCSERQARLFFHCSQYNGNL K L L E R Q 0 1 0 0 1 1 1 1 0 1 2 0 0 1 0 2 1 0 1 0 0 0 13 0 1572.7606 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLD4;E9PKN4 Q9GZV0 33 45 CSDE1;UNR Cold shock domain-containing protein E1 yes no 2 0.0015053 96.756 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8780200 5255400 3524800 8780200 5255400 3524800 0 0 0 7580 31 7745 27758;27759;27760 41940;41941;41942 41942 3 LLTTIGK LLKNHDEESLECLCRLLTTIGKDLDFEKAK ESLECLCRLLTTIGKDLDFEKAKPRMDQYF R L L G K D 0 0 0 0 0 0 0 1 0 1 2 1 0 0 0 0 2 0 0 0 0 0 7 0 744.47454 E7EX73;B4DSI9;E9PGM1;E7EUU4;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637;C9JF13;B4DZE1;B4DH17;A0A0A0MSA7;A0A0U1RQK7;Q59GJ0;O43432 E7EX73 775 781 EIF4G1;EIF4G1 variant protein;EIF4G3 Eukaryotic translation initiation factor 4 gamma 1;Eukaryotic translation initiation factor 4 gamma 3 yes no 2 0.0281 99.384 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8377400 8377400 0 8377400 8377400 0 0 0 0 7581 747 7746 27761;27762 41943;41944 41944 2 LLVACCLADIFR LASEFFLRNPNKDVRLLVACCLADIFRIYA DVRLLVACCLADIFRIYAPEAPYTSHDKLK R L L F R I 2 1 0 1 2 0 0 0 0 1 3 0 0 1 0 0 0 0 0 1 0 0 12 0 1449.7472 Q9NTI5;B7Z5S1;H0Y9L9;G1UI16;Q29RF7 G1UI16 88 99 PDS5B;PDS5A Sister chromatid cohesion protein PDS5 homolog B;Sister chromatid cohesion protein PDS5 homolog A no no 2 1.36E-08 120.68 5 0.648 0.90583 6.8696 2 Median 0.648 0.90583 6.8696 2 0 Median NaN NaN NaN 0 0 Median 7365800 4123300 3242500 7365800 4123300 3242500 0 0 0 7582 1076;1759 7747 27763;27764;27765;27766;27767 41945;41946;41947;41948;41949;41950;41951 41949 7 LLVAGSEDGGVQLFDISGR FKDTAYCATFRQDGRLLVAGSEDGGVQLFD GSEDGGVQLFDISGRAPLRQFEGHTKAVHT R L L G R A 1 1 0 2 0 1 1 4 0 1 3 0 0 1 0 2 0 0 0 2 0 0 19 0 1931.9953 Q8TED0;H0Y8P4 Q8TED0 94 112 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 7.7265E-55 201.08 4 2 0.90339 1.222 18.523 6 Median 0.95121 1.294 6.0551 4 0 Median 0.55561 0.90683 10.501 2 0 Median 321980000 183060000 138910000 150600000 77064000 73532000 171380000 106000000 65382000 7583 1660 7748 27768;27769;27770;27771;27772;27773 41952;41953;41954;41955;41956;41957;41958;41959;41960;41961;41962;41963 41957 12 LLVATSVAAR DRDSIINDFKNGTCKLLVATSVAARGLDVK NGTCKLLVATSVAARGLDVKHLILVVNYSC K L L A R G 3 1 0 0 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 2 0 0 10 0 999.60768 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6 A8K6X3 672 681 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.0025084 91.853 2 0.45675 0.63101 32.636 2 Median 0.45675 0.63101 32.636 2 0 Median NaN NaN NaN 0 0 Median 17520000 11989000 5531300 17520000 11989000 5531300 0 0 0 7584 424 7749 27774;27775 41964;41965 41965 2 LLVDINK QKIEELKLSASNQDKLLVDINKNLWEKMRH LSASNQDKLLVDINKNLWEKMRHCSDKELK K L L N K N 0 0 1 1 0 0 0 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 7 0 813.496 Q8NG31;H0YCZ2;H0YEY7 Q8NG31 1970 1976 CASC5 Protein CASC5 yes no 2 0.043339 53.554 1 0.64275 0.81929 NaN 1 Median 0.64275 0.81929 NaN 1 0 Median NaN NaN NaN 0 0 Median 6599800 3982800 2617000 6599800 3982800 2617000 0 0 0 7585 1656 7750 27776 41966 41966 1 LLVDVDESTLSPEEQK NLPFLKPDDIQYFDKLLVDVDESTLSPEEQ LVDVDESTLSPEEQKERKIMKLLLKIKNGT K L L Q K E 0 0 0 2 0 1 3 0 0 0 3 1 0 0 1 2 1 0 0 2 0 0 16 0 1800.8993 O75533;Q7Z497;A0JLT9;Q32Q20;A0PJH5 O75533 478 493 SF3B1 Splicing factor 3B subunit 1 yes no 2 1.989E-06 97.463 3 0.63077 0.79929 NaN 1 Median 0.63077 0.79929 NaN 1 0 Median NaN NaN NaN 0 0 Median 14000000 6912400 7088000 14000000 6912400 7088000 0 0 0 7586 1204 7751 27777;27778;27779 41967;41968;41969;41970 41969 4 LLVEFAR PGGHQTVLFSATLPKLLVEFARAGLTEPVL LFSATLPKLLVEFARAGLTEPVLIRLDVDT K L L A R A 1 1 0 0 0 0 1 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 7 0 846.49634 Q8TDD1;F8VRX4 Q8TDD1 284 290 DDX54 ATP-dependent RNA helicase DDX54 yes no 2 0.04948 50.966 1 0.72429 1.033 NaN 1 Median NaN NaN NaN 0 0 Median 0.72429 1.033 NaN 1 0 Median 10030000 5974000 4055900 0 0 0 10030000 5974000 4055900 7587 1658 7752 27780 41971 41971 1 LLVELIR LKSWQRLRHDLERARLLVELIRKREKLKRE RHDLERARLLVELIRKREKLKRETIKVQQI R L L I R K 0 1 0 0 0 0 1 0 0 1 3 0 0 0 0 0 0 0 0 1 0 0 7 0 854.55894 P55201 P55201 603 609 BRPF1 Peregrin yes yes 2 0.0281 60.788 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1340000 1340000 0 1340000 1340000 0 0 0 0 7588 1379 7753 27781 41972 41972 1 LLVGSEDYGR FRDMDDEESWIKEKKLLVGSEDYGRDLTGV IKEKKLLVGSEDYGRDLTGVQNLRKKHKRL K L L G R D 0 1 0 1 0 0 1 2 0 0 2 0 0 0 0 1 0 0 1 1 0 0 10 0 1107.556 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16;Q14917 Q13813 1785 1794 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.0086505 85.731 3 0.72664 1.017 8.3327 3 Median 0.72664 1.017 8.3327 3 0 Median NaN NaN NaN 0 0 Median 19467000 11533000 7934300 19467000 11533000 7934300 0 0 0 7589 1476 7754 27782;27783;27784 41973;41974;41975 41973 3 LLVGVDEK EGGVDVGDVDAKAQKLLVGVDEKLNPEDIK VDAKAQKLLVGVDEKLNPEDIKKHLLVHAP K L L E K L 0 0 0 1 0 0 1 1 0 0 2 1 0 0 0 0 0 0 0 2 0 0 8 0 871.50148 A0A024R1Y2;A0A024R1T9;Q4LE36;P53396 A0A024R1Y2 152 159 ACLY;ACLY variant protein ATP-citrate synthase yes no 2 0.029327 54.157 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7590 69 7755 27785 41976 41976 1 LLVLESFLYK APQSLEFLRTPFGGRLLVLESFLYKQEKAV PFGGRLLVLESFLYKQEKAVGDKVYWKCRQ R L L Y K Q 0 0 0 0 0 0 1 0 0 0 4 1 0 1 0 1 0 0 1 1 0 0 10 0 1223.7166 Q4VC44 Q4VC44 125 134 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes yes 2 0.00055934 93.551 4 1 0.69917 0.88472 29.311 5 Median 0.7021 0.88884 23.836 4 0 Median 0.36362 0.51463 NaN 1 0 Median 28944000 17842000 11103000 22810000 13720000 9090100 6134400 4122000 2012400 7591 1536 7756 27786;27787;27788;27789;27790 41977;41978;41979;41980;41981;41982;41983;41984 41983 8 LLVPTQFVGAIIGK PGSVSKQKPCDLPLRLLVPTQFVGAIIGKE RLLVPTQFVGAIIGKEGATIRNITKQTQSK R L L G K E 1 0 0 0 0 1 0 2 0 2 2 1 0 1 1 0 1 0 0 2 0 0 14 0 1454.8861 O00425 O00425 200 213 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 1.7995E-14 125.74 3 0.60339 0.76176 8.6833 3 Median 0.60339 0.76176 8.6833 3 0 Median NaN NaN NaN 0 0 Median 47753000 28840000 18912000 47753000 28840000 18912000 0 0 0 7592 1167 7757 27791;27792;27793 41985;41986;41987;41988;41989;41990;41991 41988 7 LLVPTQYVGAIIGK AGAPAKQQQVDIPLRLLVPTQYVGAIIGKE RLLVPTQYVGAIIGKEGATIRNITKQTQSK R L L G K E 1 0 0 0 0 1 0 2 0 2 2 1 0 0 1 0 1 0 1 2 0 0 14 0 1470.881 Q9NZI8;D3DTW3 Q9NZI8 200 213 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 2 2.5197E-10 107.24 4 1 3.4164 4.967 104.61 5 Linear 0.81211 1.0258 7.9383 4 0 Linear 6.4203 9.8316 NaN 1 0 Median 64765000 26799000 37966000 43766000 24078000 19688000 20999000 2720900 18278000 7593 1772 7758 27794;27795;27796;27797;27798 41992;41993;41994;41995;41996;41997;41998;41999 41997 8 LLVQTSVQAK VPTQVVQQVQGTQQRLLVQTSVQAKPGHVS GTQQRLLVQTSVQAKPGHVSPLQLTNIQVP R L L A K P 1 0 0 0 0 2 0 0 0 0 2 1 0 0 0 1 1 0 0 2 0 0 10 0 1085.6445 P22670 P22670 145 154 RFX1 MHC class II regulatory factor RFX1 yes yes 2 0.0062767 59.245 2 0.39814 0.55569 15.443 2 Median NaN NaN NaN 0 0 Median 0.39814 0.55569 15.443 2 0 Median 8925200 5841000 3084200 0 0 0 8925200 5841000 3084200 7594 1291 7759 27799;27800 42000;42001 42000 2 LLVSASQDGK HLAKIYAMHWGTDSRLLVSASQDGKLIIWD GTDSRLLVSASQDGKLIIWDSYTTNKVHAI R L L G K L 1 0 0 1 0 1 0 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 10 0 1016.5502 C9JZN1;C9JIS1;C9JXA5;Q6FHM2;P62879;C9JD14;A8K3F6;Q9HAV0;B1AKQ8;F6X3N5;F6UT28;F5H8J8;F5H100;F5H0S8;E7EP32;Q59G26;E9PCP0;F1T0G5;F1T0G4;B2R6K4;A0A024R056;P62873;P16520 C9JZN1 69 78 GNB2;GNB4;GNB1;GNB3 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 yes no 2 0.015251 96.668 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7595 938 7760 27801 42002 42002 1 LLVSGSSDSTLK HVAAVYQIAWSADSRLLVSGSSDSTLKVWD DSRLLVSGSSDSTLKVWDVKAQKLAMDLPG R L L L K V 0 0 0 1 0 0 0 1 0 0 3 1 0 0 0 4 1 0 0 1 0 0 12 0 1205.6503 B4E074;Q9NVX2;B4E303;A0A0A0MRH0;K7EN33 B4E074 404 415 NLE1 Notchless protein homolog 1 yes no 2 0.0056114 103.26 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4586300 4586300 0 4586300 4586300 0 0 0 0 7596 883 7761 27802;27803;27804 42003;42004;42005 42004 3 LLVVTDPR GTFTNQIQAAFREPRLLVVTDPRADHQPLT AAFREPRLLVVTDPRADHQPLTEASYVNLP R L L P R A 0 1 0 1 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 2 0 0 8 0 911.54402 C9J9K3;A0A024R2P0;A0A0C4DG17;P08865;A0A024R7P5 C9J9K3 121 128 RPSA;LOC388524 40S ribosomal protein SA yes no 2 0.0096141 75.109 1 0.86867 1.2106 NaN 1 Median 0.86867 1.2106 NaN 1 0 Median NaN NaN NaN 0 0 Median 77661000 44323000 33338000 77661000 44323000 33338000 0 0 0 7597 90 7762 27805 42006 42006 1 LLVVYPWTQR AKVKVDEVGGEALGRLLVVYPWTQRFFESF EALGRLLVVYPWTQRFFESFGDLSSADAIL R L L Q R F 0 1 0 0 0 1 0 0 0 0 2 0 0 0 1 0 1 1 1 2 0 0 10 0 1273.7183 CON__Q3SX09;CON__P02070;Q4TZM4;Q9BWU5;Q8IZI0;Q8IUL9;Q6V0K9;Q6J1Z7;Q670S4;Q52MT0;Q4F786;Q3LR79;Q0Z944;E9NGZ5;D1MGQ0;B3VL05;B2M1S8;Q9BWV6;Q9GZL9;Q9UK54;B3VL86;E9PFT6;D9YZU5;C8C504;A0N071;Q14473;P68871;P02042;Q9UM85;Q3L3Q5;D5FZW3;E9M263;Q9BXA2;Q9UBV6;Q14484;A9YUX2;A8MUF7;B5ANL9;Q9UP81;F8W6P5;Q14477;Q14476;E9PEW8;B7UCU6;B3VL31;Q14474;Q9UNL6;E9PBW4;E7CYP2;D9YZU9;D9YZU8;D9YZU7;D3GKD9;D3GKD8;Q14403;P69892;P69891;P02100 CON__Q3SX09 86 95 HBB;HBD;beta-globin;HBE1;HBG2;HBG1 Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin;Hemoglobin subunit delta;Hemoglobin subunit gamma-2;Hemoglobin subunit gamma-1;Hemoglobin subunit epsilon yes no 2 0.0071737 58.676 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13601000 13601000 0 0 0 0 13601000 13601000 0 + 7598 969 7763 27806;27807 42007;42008 42007 2 LLWGLEGLPLTVSAVQGAHPVLR EALVAAVRCYDDLSRLLWGLEGLPLTVSAV PLTVSAVQGAHPVLRYTEVFPPTPVRPAFS R L L L R Y 2 1 0 0 0 1 1 3 1 0 6 0 0 0 2 1 1 1 0 3 0 0 23 0 2425.3846 Q9H6R4;A0A0A0MRW6;B4DF80;B3KPN5 Q9H6R4 672 694 NOL6 Nucleolar protein 6 yes no 3 0.011273 20.891 1 0.74644 1.1518 NaN 1 Median NaN NaN NaN 0 0 Median 0.74644 1.1518 NaN 1 0 Median 19542000 10915000 8626400 0 0 0 19542000 10915000 8626400 7599 1738 7764 27808 42009 42009 1 LLWHGSR ECQRYKPFKQLHNRRLLWHGSRTTNFAGIL FKQLHNRRLLWHGSRTTNFAGILSQGLRIA R L L S R T 0 1 0 0 0 0 0 1 1 0 2 0 0 0 0 1 0 1 0 0 0 0 7 0 867.47152 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 859 865 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.041795 54.205 2 0.40983 0.62501 7.3138 2 Median NaN NaN NaN 0 0 Median 0.40983 0.62501 7.3138 2 0 Median 36200000 26287000 9912500 0 0 0 36200000 26287000 9912500 7600 107 7765 27809;27810 42010;42011 42011 2 LLYDLADQLHAAVGASR VVSGGRGLKSGENFKLLYDLADQLHAAVGA YDLADQLHAAVGASRAAVDAGFVPNDMQVG K L L S R A 4 1 0 2 0 1 0 1 1 0 4 0 0 0 0 1 0 0 1 1 0 0 17 0 1811.953 A0A0S2Z3L0;P13804;H0YL12;H0YK49;H0YNX6 A0A0S2Z3L0 233 249 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 3 3.1555E-07 77.468 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8471400 0 8471400 0 0 0 8471400 0 8471400 7601 455 7766 27811 42012 42012 1 LLYNRPGTVSSLK FLSKKKTDELRNLHKLLYNRPGTVSSLKKN HKLLYNRPGTVSSLKKNVGQFSGFPFEKGS K L L L K K 0 1 1 0 0 0 0 1 0 0 3 1 0 0 1 2 1 0 1 1 0 0 13 1 1446.8195 B4DNW3;P35659;B4DFG0;D6RDA2;D6R9L5 P35659 112 124 DEK Protein DEK no no 2;3 2.4133E-07 122.55 5 2 0.76817 1.0387 7.7814 7 Median 0.78554 1.0387 9.1902 5 0 Median 0.58316 1.0103 3.9543 2 0 Median 948150000 530030000 418120000 800050000 438170000 361870000 148100000 91859000 56245000 7602 1322;843 7767 27812;27813;27814;27815;27816;27817;27818 42013;42014;42015;42016;42017;42018;42019;42020;42021;42022;42023;42024;42025;42026;42027;42028;42029;42030;42031 42013 19 LLYNRPGTVSSLKK FLSKKKTDELRNLHKLLYNRPGTVSSLKKN KLLYNRPGTVSSLKKNVGQFSGFPFEKGSV K L L K K N 0 1 1 0 0 0 0 1 0 0 3 2 0 0 1 2 1 0 1 1 0 0 14 2 1574.9144 B4DNW3;P35659;B4DFG0;D6RDA2;D6R9L5 P35659 112 125 DEK Protein DEK no no 3 0.010898 52.071 2 2 0.5502 0.79669 12.1 4 Median 0.73457 0.88043 4.8611 2 0 Median 0.41137 0.72194 4.6611 2 0 Median 137250000 87386000 49865000 93851000 56183000 37668000 43400000 31203000 12197000 7603 1322;843 7768 27819;27820;27821;27822 42032;42033;42034;42035 42033 4 LLYSVQRPLHEFITAVQSR CIARSFRKQPEEGLRLLYSVQRPLHEFITA VQRPLHEFITAVQSRHTDTPVHRGVLSTLI R L L S R H 1 2 0 0 0 2 1 0 1 1 3 0 0 1 1 2 1 0 1 2 0 0 19 1 2256.2379 Q86XI2;B3KRQ2;B4DHE5 Q86XI2 979 997 NCAPG2 Condensin-2 complex subunit G2 yes no 3;4 2.4859E-09 75.589 4 5 0.59835 0.85686 21.137 8 Median 0.74459 1.0152 15.916 4 0 Median 0.47486 0.7181 12.773 4 0 Median 215510000 139770000 75743000 51794000 28899000 22895000 163720000 110870000 52848000 7604 1621 7769 27823;27824;27825;27826;27827;27828;27829;27830;27831 42036;42037;42038;42039;42040;42041;42042;42043;42044;42045;42046;42047 42042 12 LLYTFPGWK SEQGSLQLWNVKSNKLLYTFPGWKVGVTAL NVKSNKLLYTFPGWKVGVTALQQAPAVDVV K L L W K V 0 0 0 0 0 0 0 1 0 0 2 1 0 1 1 0 1 1 1 0 0 0 9 0 1123.6066 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 183 191 WDR36 WD repeat-containing protein 36 yes no 2 0.02384 53.166 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2769500 2769500 0 0 0 0 2769500 2769500 0 7605 404 7770 27832 42048 42048 1 LLYVTPEK TNIYLQLSKKDPIIKLLYVTPEKICASNRL KKDPIIKLLYVTPEKICASNRLISTLENLY K L L E K I 0 0 0 0 0 0 1 0 0 0 2 1 0 0 1 0 1 0 1 1 0 0 8 0 961.54843 H0YNU5;B2RAN0;P54132;B7ZKN7;B7Z2X2 H0YNU5 762 769 BLM Bloom syndrome protein yes no 2 0.029466 51.854 1 0.65391 0.8592 NaN 1 Median 0.65391 0.8592 NaN 1 0 Median NaN NaN NaN 0 0 Median 5225100 3044400 2180700 5225100 3044400 2180700 0 0 0 7606 725 7771 27833 42049 42049 1 LMALYVASHYK TLFCYHKASEVFLQRLMALYVASHYKNSPN FLQRLMALYVASHYKNSPNDLQMLSDAPAH R L M Y K N 2 0 0 0 0 0 0 0 1 0 2 1 1 0 0 1 0 0 2 1 0 0 11 0 1294.6744 Q05CW7;Q9H0A0;A0A087WV29 Q9H0A0 529 539 NAT10 N-acetyltransferase 10 no no 2;3 0.0018017 60.518 1 1 0.5645 0.77729 44.022 2 Median 0.85011 1.0611 NaN 1 0 Median 0.37484 0.56937 NaN 1 0 Median 14684000 9582600 5100900 4154700 2060600 2094100 10529000 7522000 3006800 7607 1730;1443 7772;7773 27834;27835 42050;42051 42051 651 2 LMDGEEPLPMLPSYK IPNFDVREIVNNIRRLMDGEEPLPMLPSYK LMDGEEPLPMLPSYKNFKGTIEELAPNQYV R L M Y K N 0 0 0 1 0 0 2 1 0 0 3 1 2 0 3 1 0 0 1 0 0 0 15 0 1718.8259 P11388 P11388 879 893 TOP2A DNA topoisomerase 2-alpha yes yes 2 6.6777E-06 77.597 2 0.70991 1.1234 0.75703 2 Median NaN NaN NaN 0 0 Median 0.70991 1.1234 0.75703 2 0 Median 213970000 125440000 88522000 0 0 0 213970000 125440000 88522000 7608 1256 7774 27836;27837 42052;42053;42054;42055 42052 512;513 4 LMEFLCNMDNK TAPGPIHLLELCDQKLMEFLCNMDNKDLVW CDQKLMEFLCNMDNKDLVWLEEIQEEAERM K L M N K D 0 0 2 1 1 0 1 0 0 0 2 1 2 1 0 0 0 0 0 0 0 0 11 0 1413.6091 Q9NQS7;B3KPD3;E9PM67 Q9NQS7 19 29 INCENP Inner centromere protein yes no 2 0.007697 46.406 1 0.59072 0.86287 NaN 1 Median NaN NaN NaN 0 0 Median 0.59072 0.86287 NaN 1 0 Median 6852900 4292700 2560100 0 0 0 6852900 4292700 2560100 7609 1752 7775 27838 42056 42056 799;800 1 LMELHGEGSSSGK RKVKMLKKPKFELGKLMELHGEGSSSGKAT GKLMELHGEGSSSGKATGDETGAKVERADG K L M G K A 0 0 0 0 0 0 2 3 1 0 2 1 1 0 0 3 0 0 0 0 0 0 13 0 1330.6187 Q6NXR8;P61247;A8K4W0;D6RG13;D6RAT0;H0Y9Y4;D6R9B6 Q6NXR8 228 240 RPS3A 40S ribosomal protein S3a yes no 2;3 5.708E-17 152.64 5 2 0.87484 1.1286 21.057 5 Median 0.8977 1.1784 11.471 3 0 Median 0.60758 0.88248 13.528 2 0 Median 32015000 16102000 15913000 18251000 7453600 10797000 13764000 8648200 5115700 7610 1393 7776;7777 27839;27840;27841;27842;27843;27844;27845 42057;42058;42059;42060;42061;42062;42063;42064;42065;42066 42066 607 10 LMFSGLLVSSR EVSELRTGAAEGLAKLMFSGLLVSSRILSR GLAKLMFSGLLVSSRILSRLILLWYNPVTE K L M S R I 0 1 0 0 0 0 0 1 0 0 3 0 1 1 0 3 0 0 0 1 0 0 11 0 1208.6587 Q9BPX3;Q6NUR1 Q9BPX3 718 728 NCAPG Condensin complex subunit 3 yes no 2 0.0014897 89.029 2 4 0.66234 0.97607 43.132 5 Median 1.1441 1.5494 23.016 2 0 Median 0.44312 0.67653 21.261 3 0 Median 58419000 36529000 21890000 11118000 5508500 5609300 47301000 31020000 16281000 7611 1706 7778;7779 27846;27847;27848;27849;27850;27851 42067;42068;42069;42070;42071;42072;42073;42074 42073 769 7 LMITHIVNQNFK PPPPPAMTNEAGAPRLMITHIVNQNFKSYA APRLMITHIVNQNFKSYAGEKILGPFHKRF R L M F K S 0 0 2 0 0 1 0 0 1 2 1 1 1 1 0 0 1 0 0 1 0 0 12 0 1456.7861 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9JWF0;C9IYK2;C9JJ64 Q9NTJ3 82 93 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 7.0628E-05 79.036 1 4 0.56484 0.91069 4.6782 5 Median 0.76068 0.97347 NaN 1 0 Median 0.55852 0.89075 3.0935 4 0 Median 150280000 94389000 55887000 3519100 2237500 1281600 146760000 92151000 54605000 7612 1760 7780 27852;27853;27854;27855;27856 42075;42076;42077;42078;42079;42080;42081;42082 42076 808 8 LMQLVDHR LIKVLEEANQAINPKLMQLVDHRGGGGGGG NQAINPKLMQLVDHRGGGGGGGKGGRSRYR K L M H R G 0 1 0 1 0 1 0 0 1 0 2 0 1 0 0 0 0 0 0 1 0 0 8 0 1010.5331 Q59F66;Q92841 Q59F66 550 557 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 0.029743 41.429 1 1.3479 1.724 NaN 1 Median NaN NaN NaN 0 0 Median 1.3479 1.724 NaN 1 0 Median 2145400 929420 1215900 0 0 0 2145400 929420 1215900 7613 1554 7781 27857 42083 42083 1 LNAFDQR SDFESGLKYITDVVKLNAFDQRHLDDINFD KYITDVVKLNAFDQRHLDDINFDVRFETFQ K L N Q R H 1 1 1 1 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 862.42972 O75691 O75691 1433 1439 UTP20 Small subunit processome component 20 homolog yes yes 2 0.030424 63.306 2 0.60645 0.80075 48.743 2 Median NaN NaN NaN 0 0 Median 0.60645 0.80075 48.743 2 0 Median 9072000 5257800 3814200 0 0 0 9072000 5257800 3814200 7614 1207 7782 27858;27859 42084;42085 42085 2 LNCAFHHNR EIPCYWENQPTGCQKLNCAFHHNRGRYVDG PTGCQKLNCAFHHNRGRYVDGLFLPPSKTV K L N N R G 1 1 2 0 1 0 0 0 2 0 1 0 0 1 0 0 0 0 0 0 0 0 9 0 1167.5356 B4DLG2;O75152;E9PQ61;E9PBY7;B4DYM8;A0A024R8H9;Q0D2N5 B4DLG2 24 32 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 2;3 0.015645 44.447 2 0.61659 0.82314 0.11182 2 Median 0.61659 0.82314 0.11182 2 0 Median NaN NaN NaN 0 0 Median 5484800 3422300 2062500 5484800 3422300 2062500 0 0 0 7615 826 7783 27860;27861 42086;42087 42087 2 LNCFLEQDLK QNLELNETIKIGLTKLNCFLEQDLKLDIPT IGLTKLNCFLEQDLKLDIPTGTTPQRKSYL K L N L K L 0 0 1 1 1 1 1 0 0 0 3 1 0 1 0 0 0 0 0 0 0 0 10 0 1278.6278 P52732;B2RAM6;Q59GZ5 P52732 909 918 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 2 0.0071862 116.52 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3477300 3477300 0 3477300 3477300 0 0 0 0 7616 1366 7784 27862 42088 42088 1 LNDGNEYLFQAK VALDYKKKKHVFKLRLNDGNEYLFQAKDDE KLRLNDGNEYLFQAKDDEEMNTWIQAISSA R L N A K D 1 0 2 1 0 1 1 1 0 0 2 1 0 1 0 0 0 0 1 0 0 0 12 0 1410.6779 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;B4DIF8 B2ZZ89 2279 2290 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.001107 107.45 2 0.90637 1.1715 6.4612 2 Median 0.90637 1.1715 6.4612 2 0 Median NaN NaN NaN 0 0 Median 8777500 4558200 4219400 8777500 4558200 4219400 0 0 0 7617 346 7785 27863;27864 42089;42090 42089 2 LNDGSQITYEK GKKVVQLDVRDNMVKLNDGSQITYEKCLIA NMVKLNDGSQITYEKCLIATGGTPRSLSAI K L N E K C 0 0 1 1 0 1 1 1 0 1 1 1 0 0 0 1 1 0 1 0 0 0 11 0 1266.6092 O95831;Q5RZA0;Q5RZ99 O95831 245 255 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 2 1.2193E-15 173.37 6 1 0.59441 0.75489 35.532 3 Median 0.54482 0.68955 12.805 2 0 Median 0.86115 1.2503 NaN 1 0 Median 44123000 30191000 13932000 38838000 27562000 11277000 5284300 2629600 2654700 7618 1224 7786 27865;27866;27867;27868;27869;27870;27871 42091;42092;42093;42094;42095;42096;42097;42098;42099;42100 42094 10 LNDLEDALQQAK AEQRGENALKDAKNKLNDLEDALQQAKEDL KNKLNDLEDALQQAKEDLARLLRDYQELMN K L N A K E 2 0 1 2 0 2 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 12 0 1356.6885 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 444 455 KRT1 Keratin, type II cytoskeletal 1 no no 2 3.9656E-32 185.96 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1209900000 1209900000 0 308550000 308550000 0 901340000 901340000 0 + 7619 1113;1114 7787 27872;27873;27874 42101;42102;42103 42101 3 LNDLEDALQQAKEDLAR AEQRGENALKDAKNKLNDLEDALQQAKEDL DLEDALQQAKEDLARLLRDYQELMNTKLAL K L N A R L 3 1 1 3 0 2 2 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 17 1 1940.9803 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 444 460 KRT1 Keratin, type II cytoskeletal 1 no no 3 1.085E-06 81.317 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8509200 8509200 0 8509200 8509200 0 0 0 0 + 7620 1113;1114 7788 27875 42104 42104 1 LNDLEEALQQAK AEQRGEHALKDARNKLNDLEEALQQAKEDL RNKLNDLEEALQQAKEDLARLLRDYQELMN K L N A K E 2 0 1 1 0 2 2 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 12 0 1370.7042 CON__P35908;P35908 CON__P35908 448 459 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2 3.5621E-123 279.77 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 99928000 99928000 0 99928000 99928000 0 0 0 0 + 7621 964 7789 27876;27877;27878;27879 42105;42106;42107;42108;42109 42106 5 LNDLQMSNFVNLK ELKKGVDIIIATPGRLNDLQMSNFVNLKNI GRLNDLQMSNFVNLKNITYLVLDEADKMLD R L N L K N 0 0 3 1 0 1 0 0 0 0 3 1 1 1 0 1 0 0 0 1 0 0 13 0 1534.7814 B2R988;Q9NXZ2 B2R988 376 388 DDX43 Probable ATP-dependent RNA helicase DDX43 yes no 2 0.020793 44.765 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2073500 0 2073500 2073500 0 2073500 0 0 0 7622 720 7790 27880 42110 42110 251 1 LNDSILQATEQR RLSRENRDLKDEIVRLNDSILQATEQRRRA IVRLNDSILQATEQRRRAEENALQQKACGS R L N Q R R 1 1 1 1 0 2 1 0 0 1 2 0 0 0 0 1 1 0 0 0 0 0 12 0 1386.7103 P15924 P15924 1256 1267 DSP Desmoplakin yes yes 2 0.0011329 93.096 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3813400 3813400 0 3813400 3813400 0 0 0 0 7623 1270 7791 27881 42111 42111 1 LNDTIQLLVR KQMEDGHTLFDYEVRLNDTIQLLVRQSLVL DYEVRLNDTIQLLVRQSLVLPHSTKERDSE R L N V R Q 0 1 1 1 0 1 0 0 0 1 3 0 0 0 0 0 1 0 0 1 0 0 10 0 1183.6925 A0A087WVR3;A0A087WTW0;Q96T88 A0A087WVR3 78 87 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 2.6289E-13 185.72 1 1 0.83777 1.1731 NaN 1 Median 0.83777 1.1731 NaN 1 0 Median NaN NaN NaN 0 0 Median 6593100 5634100 959050 2097700 1138700 959050 4495400 4495400 0 7624 337 7792 27882;27883 42112;42113 42112 2 LNDYIFSFDK VAYGCIKYADLSHNRLNDYIFSFDKMLDDR LSHNRLNDYIFSFDKMLDDRGNTAAYLLYA R L N D K M 0 0 1 2 0 0 0 0 0 1 1 1 0 2 0 1 0 0 1 0 0 0 10 0 1260.6027 P54136;B4DXW6 P54136 513 522 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 0.004482 64.297 1 0.483 0.61619 NaN 1 Median 0.483 0.61619 NaN 1 0 Median NaN NaN NaN 0 0 Median 6180800 3826500 2354300 6180800 3826500 2354300 0 0 0 7625 1373 7793 27884 42114;42115 42114 2 LNEAQPSTIATSMR DTTSTELSVVESVFKLNEAQPSTIATSMRD KLNEAQPSTIATSMRDSLIDSLT_______ K L N M R D 2 1 1 0 0 1 1 0 0 1 1 0 1 0 1 2 2 0 0 0 0 0 14 0 1517.7508 P56537;A0A0U1RQV5 P56537 224 237 EIF6 Eukaryotic translation initiation factor 6 yes no 2 1.51E-09 134.75 6 2 0.75486 0.99732 20.584 7 Median 0.86345 1.1926 19.057 5 0 Median 0.54446 0.88896 1.3313 2 0 Median 205900000 129840000 76062000 29071000 16753000 12318000 176830000 113080000 63744000 7626 1382 7794;7795 27885;27886;27887;27888;27889;27890;27891;27892 42116;42117;42118;42119;42120;42121;42122;42123;42124;42125;42126;42127;42128;42129;42130 42118 600 15 LNEFMAGFYIITNK RDSFRQAYEDLRKQRLNEFMAGFYIITNKL RLNEFMAGFYIITNKLKENYQMLTLGGDAE R L N N K L 1 0 2 0 0 0 1 1 0 2 1 1 1 2 0 0 1 0 1 0 0 0 14 0 1659.8331 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1132 1145 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.6219E-05 116.54 2 1 0.59781 0.89884 10.523 3 Median 0.65095 0.82225 12.984 2 0 Median 0.59363 0.89884 NaN 1 0 Median 26688000 15904000 10784000 8006300 3995900 4010400 18681000 11908000 6773500 7627 1760 7796;7797 27893;27894;27895 42131;42132;42133;42134;42135 42131 809 5 LNEGVVEFASYGDLK RQAGEVTFADAHRPKLNEGVVEFASYGDLK LNEGVVEFASYGDLKNAIEKLSGKEINGRK K L N L K N 1 0 1 1 0 0 2 2 0 0 2 1 0 1 0 1 0 0 1 2 0 0 15 0 1639.8094 A0A024R6D8;Q59EK7;Q13243;Q86U32 A0A024R6D8 144 158 SFRS5;SRSF5 Serine/arginine-rich splicing factor 5 yes no 2 7.7903E-05 83.314 1 2 0.86928 1.3081 2.9969 2 Median NaN NaN NaN 0 0 Median 0.86928 1.3081 2.9969 2 0 Median 48300000 33362000 14938000 17418000 17418000 0 30882000 15944000 14938000 7628 160 7798 27896;27897;27898 42136;42137;42138;42139 42136 4 LNEHFLNTTDFLDTIK HRGKLDGNQDLISVKLNEHFLNTTDFLDTI NEHFLNTTDFLDTIKSNLDRALGRQ_____ K L N I K S 0 0 2 2 0 0 1 0 1 1 3 1 0 2 0 0 3 0 0 0 0 0 16 0 1919.9629 H0YL11;B4DSZ6;Q13584;Q53GL5;P48735 H0YL11 287 302 IDH2 Isocitrate dehydrogenase [NADP];Isocitrate dehydrogenase [NADP], mitochondrial yes no 3 0.0037532 29.58 1 0.253 0.31448 NaN 1 Median 0.253 0.31448 NaN 1 0 Median NaN NaN NaN 0 0 Median 8278100 6701000 1577100 8278100 6701000 1577100 0 0 0 7629 855 7799 27899 42140 42140 1 LNEIVGNEDTVSR GHYELPWVEKYRPVKLNEIVGNEDTVSRLE VKLNEIVGNEDTVSRLEVFAREGNVPNIII K L N S R L 0 1 2 1 0 0 2 1 0 1 1 0 0 0 0 1 1 0 0 2 0 0 13 0 1444.7158 Q75MT5;B5BUD2;P35250;H7C5Q7;F8WC37;H7C5A0;H7C5G4;H7C5S7;H7C5P1 Q75MT5 47 59 RFC2 Replication factor C subunit 2 yes no 2 0.0013766 96.756 2 0.46378 0.65538 NaN 1 Median 0.46378 0.65538 NaN 1 0 Median NaN NaN NaN 0 0 Median 7169200 5930000 1239100 7169200 5930000 1239100 0 0 0 7630 898 7800 27900;27901 42141;42142;42143 42142 3 LNEPLK TNITKVAIVNAVGNRLNEPLKYSILNPGNK AIVNAVGNRLNEPLKYSILNPGNKFKIKST R L N L K Y 0 0 1 0 0 0 1 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 6 0 712.41194 E9PQ73;Q8TDW7 E9PQ73 1861 1866 FAT3 Protocadherin Fat 3 yes no 2 0.035912 95.793 1 0.73233 0.93748 NaN 1 Median 0.73233 0.93748 NaN 1 0 Median NaN NaN NaN 0 0 Median 98870000 56725000 42145000 98870000 56725000 42145000 0 0 0 7631 1044 7801 27902 42144 42144 1 LNEQQSVLQR AEEEIKQEMNTLQQKLNEQQSVLQRIAAPN TLQQKLNEQQSVLQRIAAPNMKAMEKLESV K L N Q R I 0 1 1 0 0 3 1 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1213.6415 Q14683;G8JLG1;V9GY57 Q14683 1010 1019 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 1.7548E-18 195.57 3 4 0.51093 0.8632 13.522 3 Plateau 0.51093 0.8632 13.522 3 0 Plateau NaN NaN NaN 0 0 Median 55866000 24896000 30970000 38742000 24896000 13846000 17124000 0 17124000 7632 1492 7802 27903;27904;27905;27906;27907;27908;27909 42145;42146;42147;42148;42149;42150;42151;42152;42153 42153 9 LNEQVTQEQPLK GFVQVTEICDAYTKKLNEQVTQEQPLKDLL TKKLNEQVTQEQPLKDLLHLPELFSPGMLV K L N L K D 0 0 1 0 0 3 2 0 0 0 2 1 0 0 1 0 1 0 0 1 0 0 12 0 1425.7464 Q14690;B4DH82;B4DES7 Q14690 123 134 PDCD11 Protein RRP5 homolog yes no 2 3.8873E-25 201.84 4 2 0.97323 1.2392 6.2176 6 Median 1.0423 1.2865 7.514 4 0 Median 0.82239 1.2392 0.34022 2 0 Median 86596000 44545000 42052000 51870000 25498000 26372000 34726000 19047000 15680000 7633 1494 7803 27910;27911;27912;27913;27914;27915 42154;42155;42156;42157;42158;42159;42160;42161;42162 42155 9 LNESTFDTQITK IVVDAIDVLKSRFTKLNESTFDTQITKKMG FTKLNESTFDTQITKKMGYYKILDVMYSRL K L N T K K 0 0 1 1 0 1 1 0 0 1 1 1 0 1 0 1 3 0 0 0 0 0 12 0 1395.6882 P78527 P78527 1858 1869 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 9.8424E-09 136.5 3 2 0.46752 0.582 5.2797 3 Plateau 0.46752 0.582 5.2797 3 0 Plateau NaN NaN NaN 0 0 Median 59527000 42241000 17286000 59527000 42241000 17286000 0 0 0 7634 1427 7804 27916;27917;27918;27919;27920 42163;42164;42165;42166;42167;42168;42169;42170 42169 8 LNFENTFLR RITTEKMLLQKEVEKLNFENTFLRLKLNNL QKEVEKLNFENTFLRLKLNNLNKKLIDIEA K L N L R L 0 1 2 0 0 0 1 0 0 0 2 0 0 2 0 0 1 0 0 0 0 0 9 0 1152.5928 Q562F6;B7Z7S9 Q562F6 89 97 SGOL2 Shugoshin-like 2 yes no 2 3.6985E-05 133.86 4 1 0.77152 1.0597 3.4073 4 Median 0.77818 1.0772 2.4734 3 0 Median 0.70315 1.0139 NaN 1 0 Median 48201000 29410000 18791000 36782000 23320000 13462000 11419000 6090000 5328700 7635 1546 7805 27921;27922;27923;27924;27925 42171;42172;42173;42174;42175;42176;42177 42172 7 LNFGDDIPSALR IANLQRAYSLAKEQRLNFGDDIPSALRIAK EQRLNFGDDIPSALRIAKKKRWNSIEERRI R L N L R I 1 1 1 2 0 0 0 1 0 1 2 0 0 1 1 1 0 0 0 0 0 0 12 0 1316.6725 Q9UNE7;H3BUD0;H3BS86 Q9UNE7 129 140 STUB1 E3 ubiquitin-protein ligase CHIP yes no 2 0.01559 47.559 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9140300 0 9140300 0 0 0 9140300 0 9140300 7636 1796 7806 27926 42178 42178 1 LNGNLRPHGDNR PTKQDGSGVKGYEEKLNGNLRPHGDNRTAG EEKLNGNLRPHGDNRTAGRPGKENINDEPV K L N N R T 0 2 3 1 0 0 0 2 1 0 2 0 0 0 1 0 0 0 0 0 0 0 12 1 1361.6912 A0A0U1RRM1;Q8WXI9;B3KSZ4;A0A0U1RR34;A0A0U1RRK3 A0A0U1RRM1 79 90 GATAD2B Transcriptional repressor p66-beta yes no 3 0.049081 46.73 1 0.53981 0.7037 NaN 1 Median 0.53981 0.7037 NaN 1 0 Median NaN NaN NaN 0 0 Median 710610 536930 173680 710610 536930 173680 0 0 0 7637 488 7807 27927 42179 42179 1 LNHLLK HPKNRECLLSAPRKKLNHLLKALETSKADL CLLSAPRKKLNHLLKALETSKADLESLLQT K L N L K A 0 0 1 0 0 0 0 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 6 0 736.45956 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 785 790 NCAPG2 Condensin-2 complex subunit G2 yes no 2 0.035814 94.95 1 0.77628 0.98612 NaN 1 Median 0.77628 0.98612 NaN 1 0 Median NaN NaN NaN 0 0 Median 12721000 7017100 5703500 12721000 7017100 5703500 0 0 0 7638 1621 7808 27928 42180 42180 1 LNHLSSSEDGCSTEITCETFNDFVR ECFTLRLLLEQILNKLNHLSSSEDGCSTEI CSTEITCETFNDFVRLFKQVTTAENLKDQT K L N V R L 0 1 2 2 2 0 3 1 1 1 2 0 0 2 0 4 3 0 0 1 0 0 25 0 2917.2495 Q9UDM8;A8K8C0;A4D0P7;O43913 Q9UDM8 80 104 ORC5L;ORC5 Origin recognition complex subunit 5 yes no 3 0.0021473 60.943 2 0.46238 0.651 NaN 1 Median 0.46238 0.651 NaN 1 0 Median NaN NaN NaN 0 0 Median 6948100 4426600 2521500 6948100 4426600 2521500 0 0 0 7639 543 7809 27929;27930 42181;42182;42183 42182 3 LNIDSIIQR ______________________________ MADLDKLNIDSIIQRLLEVRGSKPGKNVQL K L N Q R L 0 1 1 1 0 1 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 0 9 0 1070.6084 A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8VR82;A0A087WYY5 A0A024RBP2 7 15 PPP1CC Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit yes no 2 5.8462E-30 199.29 5 2 0.98327 1.3687 2.3856 6 Median 0.99047 1.3675 0.7862 4 0 Median 0.86093 1.4078 3.858 2 0 Median 512560000 273630000 238930000 314060000 166810000 147260000 198500000 106830000 91668000 7640 279 7810 27931;27932;27933;27934;27935;27936;27937 42184;42185;42186;42187;42188;42189;42190;42191;42192;42193;42194;42195;42196 42191 13 LNIEELLK CMVEAWNFLRQHCNRLNIEELLKHMYEVCQ LRQHCNRLNIEELLKHMYEVCQEMGLMEDL R L N L K H 0 0 1 0 0 0 2 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 8 0 970.5699 Q8WYP5;B3KVE5 Q8WYP5 903 910 AHCTF1 Protein ELYS yes no 2 1.4745E-05 164.72 5 2 0.77653 0.96904 22.6 6 Median 0.84315 1.0363 7.0212 4 0 Median 0.44603 0.6744 9.4938 2 0 Median 105850000 63059000 42787000 74699000 42849000 31850000 31147000 20210000 10938000 7641 1670 7811 27938;27939;27940;27941;27942;27943;27944 42197;42198;42199;42200;42201;42202;42203;42204;42205;42206;42207 42201 11 LNIIIIAEGAIDR FMCERLGETRSRGSRLNIIIIAEGAIDRNG SRLNIIIIAEGAIDRNGKPISSSYVKDLVV R L N D R N 2 1 1 1 0 0 1 1 0 5 1 0 0 0 0 0 0 0 0 0 0 0 13 0 1409.8242 P17858;Q7L2M7 P17858 257 269 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 2 0.00025461 109.6 4 0.41526 0.57409 7.7575 2 Median 0.41526 0.57409 7.7575 2 0 Median NaN NaN NaN 0 0 Median 9710000 8075800 1634300 9710000 8075800 1634300 0 0 0 7642 1279 7812 27945;27946;27947;27948 42208;42209;42210;42211;42212 42209 5 LNIIIVAEGAIDK HLCRRLSETRTRGSRLNIIIVAEGAIDKNG SRLNIIIVAEGAIDKNGKPITSEDIKNLVV R L N D K N 2 0 1 1 0 0 1 1 0 4 1 1 0 0 0 0 0 0 0 1 0 0 13 0 1367.8024 A0A024R0Y5;P08237;A0A0S2Z4A1;Q96I60;A0A0S2Z4I1;B4E162 A0A024R0Y5 257 269 PFKM ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type yes no 2 2.323E-10 115.33 4 1 0.54859 0.69353 10.428 4 Median 0.54859 0.69353 10.428 4 0 Median NaN NaN NaN 0 0 Median 30966000 18120000 12845000 27604000 18120000 9483400 3362100 0 3362100 7643 44 7813 27949;27950;27951;27952;27953 42213;42214;42215;42216;42217;42218;42219;42220;42221 42217 9 LNIIIVAEGAIDTQNKPITSEK QMCVKLSENRARKKRLNIIIVAEGAIDTQN EGAIDTQNKPITSEKIKELVVTQLGYDTRV R L N E K I 2 0 2 1 0 1 2 1 0 5 1 2 0 0 1 1 2 0 0 1 0 0 22 1 2366.3057 Q01813;B1APP6;V9GY25 Q01813 266 287 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 3 1.5377E-05 50.883 2 0.65161 0.80909 42.647 2 Median 0.65161 0.80909 42.647 2 0 Median NaN NaN NaN 0 0 Median 23072000 13430000 9641900 23072000 13430000 9641900 0 0 0 7644 1434 7814 27954;27955 42222;42223;42224 42223 3 LNIISNLDCVNEVIGIR PLFLAQLKDECPEVRLNIISNLDCVNEVIG IISNLDCVNEVIGIRQLSQSLLPAIVELAE R L N I R Q 0 1 3 1 1 0 1 1 0 4 2 0 0 0 0 1 0 0 0 2 0 0 17 0 1941.0353 B4DQY1;B4DDF7;A8K7B7;A8K3H8;P30153;B3KQV6;Q8NB89;B4DE69;H0YDG7;A8K8B0;P30154;B7Z1G3 B4DQY1 348 364 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform no no 2 5.2545E-06 124.42 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6130100 6130100 0 6130100 6130100 0 0 0 0 7645 595;638 7815 27956 42225 42225 1 LNILDTLSK AVPLALALISVSNPRLNILDTLSKFSHDAD SVSNPRLNILDTLSKFSHDADPEVSYNSIF R L N S K F 0 0 1 1 0 0 0 0 0 1 3 1 0 0 0 1 1 0 0 0 0 0 9 0 1015.5914 Q59EG8;Q13200;B4DM22;Q13041;H7C1H2 Q59EG8 709 717 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 2 0.00023699 124.08 4 1 0.37182 0.46932 7.8569 3 Median 0.37182 0.46932 7.8569 3 0 Median NaN NaN NaN 0 0 Median 37665000 24642000 13024000 34365000 24642000 9723200 3300300 0 3300300 7646 1465 7816 27957;27958;27959;27960;27961 42226;42227;42228;42229;42230;42231 42226 6 LNIPAILR GQGIWALLGRITGQKLNIPAILRAPKERKP GRITGQKLNIPAILRAPKERKPSKKEGGTQ K L N L R A 1 1 1 0 0 0 0 0 0 2 2 0 0 0 1 0 0 0 0 0 0 0 8 0 908.58074 A0A0U1RRH6;O94880;B4DG57 A0A0U1RRH6 694 701 PHF14 PHD finger protein 14 yes no 2 0.0030951 119.56 4 2 0.75385 1.0011 37.801 5 Median 0.65323 0.87337 24.749 3 0 Median 0.97748 1.4947 8.8504 2 0 Median 92240000 52969000 39272000 49785000 30265000 19519000 42456000 22703000 19753000 7647 487 7817 27962;27963;27964;27965;27966;27967 42232;42233;42234;42235;42236;42237;42238;42239;42240;42241;42242 42232 11 LNIRPLLR TLDELGIHLTKEELKLNIRPLLRLVCKKFF LTKEELKLNIRPLLRLVCKKFFGEFTGFVD K L N L R L 0 2 1 0 0 0 0 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 8 1 993.64473 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 361 368 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 3 0.0018435 102.77 4 1 0.51645 0.68861 50.501 5 Median 0.48746 0.6463 9.5747 4 0 Median 1.5052 1.9885 NaN 1 0 Median 37022000 23562000 13460000 34282000 22437000 11845000 2740500 1125100 1615400 7648 654 7818 27968;27969;27970;27971;27972 42243;42244;42245;42246;42247;42248;42249;42250;42251;42252 42249 10 LNISFPATGCQK ______________________________ ______________________________ K L N Q K L 1 0 1 0 1 1 0 1 0 1 1 1 0 1 1 1 1 0 0 0 0 0 12 0 1334.6653 Q96DV6;A2A3R6;P62753;A2A3R7 Q96DV6 3 14 RPS6 40S ribosomal protein S6 yes no 2 5.2516E-29 204.34 6 2 0.94756 1.2529 44.521 6 Median 0.96287 1.2682 2.1775 4 0 Median 0.34232 0.53807 0.080413 2 0 Median 10458000000 5076200000 5381900000 9306600000 4239200000 5067400000 1151500000 837010000 314510000 7649 535 7819 27973;27974;27975;27976;27977;27978;27979;27980 42253;42254;42255;42256;42257;42258;42259;42260;42261;42262;42263;42264;42265;42266;42267;42268;42269;42270;42271;42272;42273;42274;42275 42259 23 LNIWGEAR LSKRPMPLSARGNSRLNIWGEARVGSELCA SARGNSRLNIWGEARVGSELCAGWEEQFEV R L N A R V 1 1 1 0 0 0 1 1 0 1 1 0 0 0 0 0 0 1 0 0 0 0 8 0 957.50321 Q6AHZ7;Q12789;Q6AWA4;H3BU55 Q6AHZ7 1175 1182 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.036271 47.082 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 996140 996140 0 0 0 0 996140 996140 0 7650 1457 7820 27981 42276 42276 1 LNLAFR KAKGVWSTLPVNEKKLNLAFRSARSVILIF STLPVNEKKLNLAFRSARSVILIFSVRESG K L N F R S 1 1 1 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 6 0 732.42826 J3QR07;Q96MU7;Q59GM1 J3QR07 387 392 YTHDC1 YTH domain-containing protein 1 yes no 2 0.022322 124.34 3 0.40885 0.55518 3.2237 3 Median 0.40885 0.55518 3.2237 3 0 Median NaN NaN NaN 0 0 Median 27456000 18992000 8464400 27456000 18992000 8464400 0 0 0 7651 1144 7821 27982;27983;27984 42277;42278;42279 42277 3 LNLAFVANLFNK RQFVTPADVVSGNPKLNLAFVANLFNKYPA NPKLNLAFVANLFNKYPALTKPENQDIDWT K L N N K Y 2 0 3 0 0 0 0 0 0 0 3 1 0 2 0 0 0 0 0 1 0 0 12 0 1362.766 H7C4N2;B4DG31;Q96HI1;B4DPW9;A0A0A0MSQ0;Q53GY0;P13797 H7C4N2 86 97 PLS3 Plastin-3 yes no 2 0.0006171 101.65 3 0.33099 0.42076 16.094 2 Median 0.33099 0.42076 16.094 2 0 Median NaN NaN NaN 0 0 Median 4722800 3670200 1052700 4722800 3670200 1052700 0 0 0 7652 399 7822 27985;27986;27987 42280;42281;42282 42282 3 LNLDNVISVSIGAR MFSATFAYDVEQWCKLNLDNVISVSIGARN KLNLDNVISVSIGARNSAVETVEQELLFVG K L N A R N 1 1 2 1 0 0 0 1 0 2 2 0 0 0 0 2 0 0 0 2 0 0 14 0 1469.8202 Q9Y2R4;B3KM65;Q59H21 Q9Y2R4 366 379 DDX52 Probable ATP-dependent RNA helicase DDX52 yes no 2 1.5269E-05 80.979 2 1.2563 1.7051 22.044 2 Median 1.2563 1.7051 22.044 2 0 Median NaN NaN NaN 0 0 Median 8755400 3804900 4950500 8755400 3804900 4950500 0 0 0 7653 1807 7823 27988;27989 42283;42284 42283 2 LNLDSIIGR ______________________________ MSDSEKLNLDSIIGRLLEVQGSRPGKNVQL K L N G R L 0 1 1 1 0 0 0 1 0 2 2 0 0 0 0 1 0 0 0 0 0 0 9 0 999.57129 P62136;A0A140VJS9;E9PMD7 P62136 7 15 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase yes no 2 0.0002707 105.14 4 2 0.83623 1.2264 2.0455 4 Linear 0.89536 1.1922 2.3412 2 0 Median 0.7821 1.2228 0.8221 2 0 Median 101820000 50051000 51768000 47459000 16238000 31221000 54361000 33814000 20547000 7654 1396 7824 27990;27991;27992;27993;27994;27995 42285;42286;42287;42288;42289;42290;42291 42287 7 LNLEQGR SCDLYFVGASSEVYRLNLEQGRYLNPLQTD GASSEVYRLNLEQGRYLNPLQTDAAENNVC R L N G R Y 0 1 1 0 0 1 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 828.44537 Q9BSC4;B4DS83;H7C1Z3 Q9BSC4 161 167 NOL10 Nucleolar protein 10 yes no 2 0.0092136 83.614 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17642000 8149400 9492800 9492800 0 9492800 8149400 8149400 0 7655 1710 7825 27996;27997 42292;42293 42293 2 LNLIHSEISNLAGFEVEAIINPTNADIDLK GFTVLSTKSLFLGQKLNLIHSEISNLAGFE VEAIINPTNADIDLKDDLGNTLEKKGGKEF K L N L K D 3 0 4 2 0 0 3 1 1 5 4 1 0 1 1 2 1 0 0 1 0 0 30 0 3262.7085 O75367 O75367 197 226 H2AFY Core histone macro-H2A.1 yes yes 3 1.4325E-92 165.37 6 2 0.82392 1.0778 10.336 8 Median 0.84436 1.1058 11.919 6 0 Median 0.65961 1.036 1.7163 2 0 Median 2352700000 1258400000 1094200000 2289900000 1222400000 1067500000 62782000 36033000 26749000 7656 1198 7826 27998;27999;28000;28001;28002;28003;28004;28005 42294;42295;42296;42297;42298;42299;42300;42301;42302;42303;42304;42305 42301 12 LNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEK GFTVLSTKSLFLGQKLNLIHSEISNLAGFE ADIDLKDDLGNTLEKKGGKEFVEAVLELRK K L N E K K 3 0 5 4 0 0 4 2 1 5 6 2 0 1 1 2 2 0 0 1 0 0 39 1 4248.1802 O75367 O75367 197 235 H2AFY Core histone macro-H2A.1 yes yes 4 5.8884E-134 187.7 4 0.8205 1.003 15.59 3 Median 0.8205 1.003 15.59 3 0 Median NaN NaN NaN 0 0 Median 701650000 367210000 334440000 701650000 367210000 334440000 0 0 0 7657 1198 7827 28006;28007;28008;28009 42306;42307;42308;42309;42310 42309 5 LNLLDTCAVCHQNIQSR SRQGPDSERGGEAARLNLLDTCAVCHQNIQ LLDTCAVCHQNIQSRAPKLLPCLHSFCQRC R L N S R A 1 1 2 1 2 2 0 0 1 1 3 0 0 0 0 1 1 0 0 1 0 0 17 0 2040.9833 A0A024R784;O15164 A0A024R784 50 66 TRIM24 Transcription intermediary factor 1-alpha yes no 3 9.1149E-08 77.468 1 0.60576 0.80816 NaN 1 Median 0.60576 0.80816 NaN 1 0 Median NaN NaN NaN 0 0 Median 7224200 4948500 2275700 7224200 4948500 2275700 0 0 0 7658 171 7828 28010 42311 42311 1 LNLLGR RKYCQRPCDNLHLCKLNLLGRCNYSQSERN PCDNLHLCKLNLLGRCNYSQSERNLCKYSH K L N G R C 0 1 1 0 0 0 0 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 6 0 684.42826 Q7Z2W4;A8K9U6;C9J6P4 Q7Z2W4 90 95 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 0.031318 92.075 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4731800 4731800 0 4731800 4731800 0 0 0 0 7659 1613 7829 28011 42312 42312 1 LNLLHEFLQTEIK LERDSLTEKECVKEKLNLLHEFLQTEIKNQ EKLNLLHEFLQTEIKNQLCDLETKLRKEEL K L N I K N 0 0 1 0 0 1 2 0 1 1 4 1 0 1 0 0 1 0 0 0 0 0 13 0 1596.8875 A0A024R7E3;P26358;Q59FP7;K7EJL0;K7EMU8 A0A024R7E3 108 120 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 3 3.4536E-13 161.87 4 1 0.42189 0.53531 32.083 5 Median 0.41915 0.53208 6.7599 4 0 Median 0.74366 1.1004 NaN 1 0 Median 41262000 26320000 14942000 31219000 21213000 10006000 10043000 5106600 4936400 7660 176 7830 28012;28013;28014;28015;28016 42313;42314;42315;42316;42317;42318;42319;42320;42321 42315 9 LNLNNTVLSK EALGIRKPYIWEYSRLNLNNTVLSKRKLTW WEYSRLNLNNTVLSKRKLTWFVNEGLVDGW R L N S K R 0 0 3 0 0 0 0 0 0 0 3 1 0 0 0 1 1 0 0 1 0 0 10 0 1114.6346 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 426 435 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.0005462 121.73 4 1 0.49911 0.63682 85.232 5 Median 0.49705 0.63529 8.4985 4 0 Median 2.7552 4.0703 NaN 1 0 Median 52692000 31335000 21357000 46037000 29442000 16595000 6655500 1893600 4762000 7661 1242 7831 28017;28018;28019;28020;28021 42322;42323;42324;42325;42326;42327;42328;42329;42330 42322 9 LNLSCIHSPVVNELMR LAVADAKLGGVIKEKLNLSCIHSPVVNELM NLSCIHSPVVNELMRGIRSQMDGLIPGVEP K L N M R G 0 1 2 0 1 0 1 0 1 1 3 0 1 0 1 2 0 0 0 2 0 0 16 0 1880.9601 Q9Y2X3;B3KN82;B4DUY3 Q9Y2X3 102 117 NOP58 Nucleolar protein 58 yes no 3 0.00014254 66.738 3 1 0.46515 0.64177 21.533 3 Median 0.55729 0.77037 25.828 2 0 Median 0.4022 0.63225 NaN 1 0 Median 46246000 28963000 17283000 21469000 11565000 9904000 24777000 17398000 7378900 7662 1810 7832;7833 28022;28023;28024;28025 42331;42332;42333;42334 42334 837 4 LNLSQVR VGTPGRLDDLVSTGKLNLSQVRFLVLDEAD DDLVSTGKLNLSQVRFLVLDEADGLLSQGY K L N V R F 0 1 1 0 0 1 0 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 7 0 828.48175 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 278 284 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.010219 118.01 2 0.63716 0.85792 27.046 2 Median 0.63716 0.85792 27.046 2 0 Median NaN NaN NaN 0 0 Median 43051000 27284000 15766000 43051000 27284000 15766000 0 0 0 7663 378 7834 28026;28027 42335;42336 42336 2 LNLVDLAGSENIGR KETTIDGEELVKIGKLNLVDLAGSENIGRS KLNLVDLAGSENIGRSGAVDKRAREAGNIN K L N G R S 1 1 2 1 0 0 1 2 0 1 3 0 0 0 0 1 0 0 0 1 0 0 14 0 1469.7838 P52732;B2RAM6 P52732 261 274 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 2 5.4514E-05 101.71 4 1 0.54911 0.7312 118.79 4 Median 0.41376 0.5547 37.353 3 0 Median 4.4535 6.2833 NaN 1 0 Median 46664000 26866000 19798000 38862000 25992000 12871000 7801700 873810 6927900 7664 1366 7835 28028;28029;28030;28031;28032 42337;42338;42339;42340;42341;42342 42342 6 LNLVEAFVEDAELR WIKQPLMDKNRIEERLNLVEAFVEDAELRQ RLNLVEAFVEDAELRQTLQEDLLRRFPDLN R L N L R Q 2 1 1 1 0 0 3 0 0 0 3 0 0 1 0 0 0 0 0 2 0 0 14 0 1616.841 V9H019;Q53GS1;Q53FK0;E9PHA6;P43246;Q53RU4;B4DL39;B4DSB9;V9H068;V9H0D5;V9H023;Q0ZAJ1;V9H0B2 V9H019 360 373 MSH2 DNA mismatch repair protein Msh2 yes no 2 0.0010421 100.72 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10739000 10739000 0 10739000 10739000 0 0 0 0 7665 1029 7836 28033;28034 42343;42344 42344 2 LNLVGEK KQEKKEKLKNEKALRLNLVGEKLQWFQNHL LKNEKALRLNLVGEKLQWFQNHLDPQKKRY R L N E K L 0 0 1 0 0 0 1 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 7 0 771.44905 D6RA57;H0Y9X1;Q96EY4;B7Z504;D6RE67;D6RC31 D6RA57 48 54 TMA16 Translation machinery-associated protein 16 yes no 2 0.030956 62.717 1 0.28172 0.40806 NaN 1 Median NaN NaN NaN 0 0 Median 0.28172 0.40806 NaN 1 0 Median 5196700 3964100 1232700 0 0 0 5196700 3964100 1232700 7666 989 7837 28035 42345 42345 1 LNNDDNVDGLLVQLPLPEHIDER PASISEEELLNLINKLNNDDNVDGLLVQLP GLLVQLPLPEHIDERRICNAVSPDKDVDGF K L N E R R 0 1 3 4 0 1 2 1 1 1 5 0 0 0 2 0 0 0 0 2 0 0 23 0 2627.3191 B2R7W0;P13995 B2R7W0 114 136 MTHFD2 Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes no 3 0.0071734 43.328 2 0.60965 0.82868 22.853 2 Median 0.60965 0.82868 22.853 2 0 Median NaN NaN NaN 0 0 Median 12924000 7507800 5416200 12924000 7507800 5416200 0 0 0 7667 709 7838 28036;28037 42346;42347 42346 2 LNNLVLFDK KAKKKKWSKGKVRDKLNNLVLFDKATYDKL GKVRDKLNNLVLFDKATYDKLCKEVPNYKL K L N D K A 0 0 2 1 0 0 0 0 0 0 3 1 0 1 0 0 0 0 0 1 0 0 9 0 1074.6073 P62851 P62851 44 52 RPS25 40S ribosomal protein S25 yes yes 2 2.4535E-05 143.37 5 2 0.81625 1.1058 10.853 6 Median 0.81602 1.05 6.2626 4 0 Median 0.82592 1.2644 5.982 2 0 Median 372140000 197900000 174250000 324890000 170630000 154260000 47253000 27262000 19991000 7668 1413 7839 28038;28039;28040;28041;28042;28043;28044 42348;42349;42350;42351;42352;42353;42354;42355;42356;42357;42358;42359;42360;42361;42362 42350 15 LNNPGSTVFTEDCNILLK LWAIEMWDPAAQAFRLNNPGSTVFTEDCNI PGSTVFTEDCNILLKLVMAGETTNSRGQRL R L N L K L 0 0 3 1 1 0 1 1 0 1 3 1 0 1 1 1 2 0 0 1 0 0 18 0 2034.0092 A0A024R7E3;P26358;Q59FP7;B3KVA0;I6L9H2 A0A024R7E3 1241 1258 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 no no 2 4.0313E-84 243.37 4 0.3855 0.48691 11.822 4 Median 0.3855 0.48691 11.822 4 0 Median NaN NaN NaN 0 0 Median 35427000 27357000 8069800 35427000 27357000 8069800 0 0 0 7669 176;1129 7840 28045;28046;28047;28048 42363;42364;42365;42366;42367;42368;42369;42370;42371;42372 42368 10 LNPADAPNPVVFVATK SGIRSSSQPAAKRQKLNPADAPNPVVFVAT NPADAPNPVVFVATKDTRALRKALTHLEMR K L N T K D 3 0 2 1 0 0 0 0 0 0 1 1 0 1 3 0 1 0 0 3 0 0 16 0 1651.8934 A0A024R534;O94776 A0A024R534 596 611 MTA2 Metastasis-associated protein MTA2 yes no 2 4.5688E-13 137.95 4 1 0.74625 0.94386 20.732 5 Median 0.73266 0.91951 3.7128 4 0 Median 0.92875 1.4611 NaN 1 0 Median 239550000 133820000 105720000 172350000 98774000 73573000 67199000 35048000 32151000 7670 133 7841 28049;28050;28051;28052;28053 42373;42374;42375;42376;42377;42378;42379;42380;42381 42376 9 LNPDLFITGSYDHTVK FKEHSDYVRCGCASKLNPDLFITGSYDHTV NPDLFITGSYDHTVKMFDARTSESVLSVEH K L N V K M 0 0 1 2 0 0 0 1 1 1 2 1 0 1 1 1 2 0 1 1 0 0 16 0 1818.9152 Q8TED0;H0Y8P4 Q8TED0 175 190 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 3 0.0012156 32.998 2 0.66207 1.0286 4.6575 2 Median NaN NaN NaN 0 0 Median 0.66207 1.0286 4.6575 2 0 Median 54150000 31243000 22907000 0 0 0 54150000 31243000 22907000 7671 1660 7842 28054;28055 42382;42383 42382 2 LNPQEYLTSTACR EIYLAYRNFMIDTYRLNPQEYLTSTACRRN YRLNPQEYLTSTACRRNLTGDVCAVMRVHA R L N C R R 1 1 1 0 1 1 1 0 0 0 2 0 0 0 1 1 2 0 1 0 0 0 13 0 1551.7351 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q05BW5;B4DYF9;Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;B4DF22 Q58EY4 500 512 SMARCC1;SMARCC2 SWI/SNF complex subunit SMARCC1;SWI/SNF complex subunit SMARCC2 no no 2 1.6564E-05 130.44 4 2 0.65105 0.86633 35.219 6 Median 0.61128 0.82334 6.993 4 0 Median 1.1398 1.6009 10.06 2 0 Median 78033000 43497000 34536000 57565000 33377000 24187000 20468000 10119000 10349000 7672 1549;257 7843 28056;28057;28058;28059;28060;28061 42384;42385;42386;42387;42388;42389;42390;42391;42392;42393;42394;42395;42396 42387 13 LNQDQLDAVSK GKLDDYQERMNKGERLNQDQLDAVSKYQEV KGERLNQDQLDAVSKYQEVTNNLEFAKELQ R L N S K Y 1 0 1 2 0 2 0 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 11 0 1229.6252 E9PLA9;B4DSF8;G3V153;B3KXU8;Q14444 E9PLA9 88 98 CAPRIN1 Caprin-1 yes no 2 7.6508E-05 92.538 3 0.78882 0.99542 14.628 3 Median 0.78882 0.99542 14.628 3 0 Median NaN NaN NaN 0 0 Median 16832000 10131000 6700700 16832000 10131000 6700700 0 0 0 7673 789 7844 28062;28063;28064 42397;42398;42399 42399 3 LNQEVALNLK SSLTISEGPIVSERRLNQEVALNLKEDHEV VSERRLNQEVALNLKEDHEVEVGVLKESVD R L N L K E 1 0 2 0 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 10 0 1140.6503 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1478 1487 AHCTF1 Protein ELYS yes no 2 3.1461E-05 103.87 2 0.56415 0.84626 3.7178 2 Median NaN NaN NaN 0 0 Median 0.56415 0.84626 3.7178 2 0 Median 20861000 13460000 7400200 0 0 0 20861000 13460000 7400200 7674 1670 7845 28065;28066 42400;42401 42401 2 LNQLPSVTLDAVLQGDRER NTVNRKALKTERKRKLNQLPSVTLDAVLQG PSVTLDAVLQGDRERGGSLRGGAEDPSKED K L N E R G 1 2 1 2 0 2 1 1 0 0 4 0 0 0 1 1 1 0 0 2 0 0 19 1 2123.1335 B2RWP5;Q96L73;Q8NB95;Q96MN8;Q96DQ7 B2RWP5 787 805 NSD1 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 3 0.023772 19.819 1 0.82708 1.0724 NaN 1 Median 0.82708 1.0724 NaN 1 0 Median NaN NaN NaN 0 0 Median 7730100 4070200 3659900 7730100 4070200 3659900 0 0 0 7675 749 7846 28067 42402 42402 1 LNQPPEDGISSVK ______________________________ FKLNQPPEDGISSVKFSPNTSQFLLVSSWD K L N V K F 0 0 1 1 0 1 1 1 0 1 1 1 0 0 2 2 0 0 0 1 0 0 13 0 1382.7042 J3QT28;A0A140VJF3;O43684;J3QSX4 J3QT28 9 21 BUB3 Mitotic checkpoint protein BUB3 yes no 2 0.0010302 62.633 3 2 0.53538 0.66362 36.179 5 Median 0.51659 0.63775 4.8239 3 0 Median 0.8129 1.2241 1.1836 2 0 Median 82444000 48846000 33597000 44028000 27561000 16467000 38416000 21285000 17130000 7676 494 7847 28068;28069;28070;28071;28072 42403;42404;42405;42406;42407;42408;42409 42408 7 LNQSPSLAPVK GKTQNGQDKTNAPSRLNQSPSLAPVKRTYE APSRLNQSPSLAPVKRTYEQMEFPLLKKRK R L N V K R 1 0 1 0 0 1 0 0 0 0 2 1 0 0 2 2 0 0 0 1 0 0 11 0 1152.6503 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 706 716 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 2.653E-06 111.61 4 2 0.7953 0.98685 26.163 6 Median 0.71189 0.89898 10.667 4 0 Median 0.98002 1.4813 7.3055 2 0 Median 87863000 48148000 39715000 57991000 33331000 24660000 29873000 14817000 15056000 7677 729 7848 28073;28074;28075;28076;28077;28078 42410;42411;42412;42413;42414;42415;42416;42417;42418;42419 42413 10 LNQSQREELGLIEQAYDNPHEALSR LALERLKEAYSVKSRLNQSQREELGLIEQA LIEQAYDNPHEALSRIKRHLLTQRAFKEVG R L N S R I 2 2 2 1 0 3 4 1 1 1 4 0 0 0 1 2 0 0 1 0 0 0 25 1 2909.4268 Q6P2Q9;I3L0J9 Q6P2Q9 856 880 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 4 1.1712E-12 112.64 3 2 0.80007 1.1097 58.929 5 Median 0.58439 0.78443 55.381 3 0 Median 1.0512 1.5245 13.332 2 0 Median 86598000 44494000 42105000 58861000 31100000 27761000 27737000 13394000 14343000 7678 1592 7849 28079;28080;28081;28082;28083 42420;42421;42422;42423;42424;42425;42426 42420 7 LNQVCATHQHFESR CLRPGTVTDETFLEKLNQVCATHQHFESRM KLNQVCATHQHFESRMSKCSRFLNDTSLPH K L N S R M 1 1 1 0 1 2 1 0 2 0 1 0 0 1 0 1 1 0 0 1 0 0 14 0 1725.8005 E9PDF6;B0I1S9;O43795;A0A0U1RRI3 E9PDF6 479 492 MYO1B Unconventional myosin-Ib yes no 3 0.00014479 97.273 2 1.2911 1.7626 6.0865 2 Median 1.2911 1.7626 6.0865 2 0 Median NaN NaN NaN 0 0 Median 10615000 4049300 6565200 10615000 4049300 6565200 0 0 0 7679 665 7850 28084;28085 42427;42428 42427 2 LNQVCFDDDGTSSPQDR QSEVADKTEDYLWLKLNQVCFDDDGTSSPQ QVCFDDDGTSSPQDRLTLSQFQKQLLEDYG K L N D R L 0 1 1 4 1 2 0 1 0 0 1 0 0 1 1 2 1 0 0 1 0 0 17 0 1952.817 H3BVG0;Q8N1F7;A8K897;H3BPA9 H3BVG0 418 434 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.0019511 50.207 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4147100 4147100 0 4147100 4147100 0 0 0 0 7680 1111 7851 28086;28087 42429;42430 42430 2 LNQYFQK AGLHGNWTLENAKARLNQYFQKEKIQGEYK TLENAKARLNQYFQKEKIQGEYKYTQVGPD R L N Q K E 0 0 1 0 0 2 0 0 0 0 1 1 0 1 0 0 0 0 1 0 0 0 7 0 939.48142 Q08211;Q58F26;Q6PJK6 Q08211 185 191 DHX9 ATP-dependent RNA helicase A yes no 2 0.012796 124.32 5 2 0.7438 0.91737 NaN 1 Median 0.7438 0.91737 NaN 1 0 Median NaN NaN NaN 0 0 Median 70118000 51337000 18781000 33474000 14694000 18781000 36644000 36644000 0 7681 1448 7852 28088;28089;28090;28091;28092;28093;28094 42431;42432;42433;42434;42435;42436;42437 42436 7 LNRLPAAGVGDMVMATVK AKNLYIISVKGIKGRLNRLPAAGVGDMVMA LPAAGVGDMVMATVKKGKPELRKKVHPAVV R L N V K K 3 1 1 1 0 0 0 2 0 0 2 1 2 0 1 0 1 0 0 3 0 0 18 1 1841.9856 Q9BTQ7;A0A024R1Q8;P62829;J3KT29;C9JD32;B9ZVP7 Q9BTQ7 43 60 RPL23 60S ribosomal protein L23 yes no 3 0.00036534 40.614 1 0.59448 1.0728 NaN 1 Median NaN NaN NaN 0 0 Median 0.59448 1.0728 NaN 1 0 Median 160000000 105290000 54714000 0 0 0 160000000 105290000 54714000 7682 63 7853 28095 42438 42438 40;41 1 LNSAECYYPER NRLLYAVGGFDGTNRLNSAECYYPERNEWR GTNRLNSAECYYPERNEWRMITAMNTIRSG R L N E R N 1 1 1 0 1 0 2 0 0 0 1 0 0 0 1 1 0 0 2 0 0 0 11 0 1400.6031 A0A024R7C0;Q14145;K7EQX2 A0A024R7C0 484 494 KEAP1 Kelch-like ECH-associated protein 1 yes no 2 0.022559 51.927 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7683 173 7854 28096 42439 42439 1 LNSGGGLSEELGSAR HSLGKVTSDLAKRRKLNSGGGLSEELGSAR LNSGGGLSEELGSARRSGEVTLTKGDPGSL K L N A R R 1 1 1 0 0 0 2 4 0 0 3 0 0 0 0 3 0 0 0 0 0 0 15 0 1445.711 Q59FM7;A0A0G2JIS2;A0A024RCN9;B7Z852;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7 Q59FM7 44 58 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 2 0.0014611 87.18 1 1.0133 1.4188 NaN 1 Median 1.0133 1.4188 NaN 1 0 Median NaN NaN NaN 0 0 Median 2103000 1189800 913160 2103000 1189800 913160 0 0 0 7684 298 7855 28097 42440 42440 1 LNSLAIGLR LAAPLLKRLSLSTSKLNSLAIGLRQIAASS SLSTSKLNSLAIGLRQIAASSQDSVGRVLR K L N L R Q 1 1 1 0 0 0 0 1 0 1 3 0 0 0 0 1 0 0 0 0 0 0 9 0 955.58147 P54886 P54886 433 441 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.001423 98.523 3 1.2932 1.7658 7.5316 3 Median 1.2932 1.7658 7.5316 3 0 Median NaN NaN NaN 0 0 Median 23515000 11192000 12323000 23515000 11192000 12323000 0 0 0 7685 1375 7856 28098;28099;28100 42441;42442;42443 42443 3 LNSNTQVVLLSATMPSDVLEVTKK LSRGFKDQIYDIFQKLNSNTQVVLLSATMP LSATMPSDVLEVTKKFMRDPIRILVKKEEL K L N K K F 1 0 2 1 0 1 1 0 0 0 4 2 1 0 1 3 3 0 0 4 0 0 24 1 2586.3939 A8K7F6;P60842;A8K088;J3KT12;J3KTB5;Q59F68;J3QS69;B4DNH2;J3KSZ0;J3KTN0;B4DKP9 A8K7F6 203 226 EIF4A1 Eukaryotic initiation factor 4A-I yes no 3 0.040227 25.803 1 0.29966 0.36868 NaN 1 Median 0.29966 0.36868 NaN 1 0 Median NaN NaN NaN 0 0 Median 7610000 5763400 1846600 7610000 5763400 1846600 0 0 0 7686 634 7857 28101 42444 42444 0 LNTGILNK LFMENKQPEDDLFDRLNTGILNKHLQDLME EDDLFDRLNTGILNKHLQDLMEGLTAKVFR R L N N K H 0 0 2 0 0 0 0 1 0 1 2 1 0 0 0 0 1 0 0 0 0 0 8 0 871.51272 P11387;B9EG90 P11387 568 575 TOP1 DNA topoisomerase 1 yes no 2 2.6268E-24 197.65 4 2 0.82352 1.202 14.486 4 Median 0.80132 1.0571 1.3761 2 0 Median 0.84936 1.358 0.45967 2 0 Median 612850000 296700000 316150000 487100000 231130000 255970000 125750000 65565000 60188000 7687 1255 7858 28102;28103;28104;28105;28106;28107 42445;42446;42447;42448;42449;42450;42451;42452;42453;42454 42448 10 LNTLLQR MMVAGFKKQMADTGKLNTLLQRAPQCLGKF KQMADTGKLNTLLQRAPQCLGKFIEIAARK K L N Q R A 0 1 1 0 0 1 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 7 0 856.51305 Q96BA7;B3KX72;B4DLR3;Q00839;Q7Z4Q5 Q96BA7 449 455 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 2 0.00010274 138.37 2 1 0.96777 1.4344 120.16 2 Median 0.44158 0.61329 NaN 1 0 Median 2.121 3.3548 NaN 1 0 Median 287840000 209230000 78604000 259930000 199530000 60401000 27904000 9701200 18203000 7688 788 7859 28108;28109;28110 42455;42456;42457;42458 42455 4 LNTTTMSNATANSSIR KRRGLAPNTPGKARKLNTTTMSNATANSSI NTTTMSNATANSSIRPIFGGTVYHSPVSRL K L N I R P 2 1 3 0 0 0 0 0 0 1 1 0 1 0 0 3 4 0 0 0 0 0 16 0 1680.8101 A0A024RC67;O43663;G3V3N7 A0A024RC67 488 503 PRC1 Protein regulator of cytokinesis 1 yes no 2 0.00037257 49.298 1 0.43409 0.57054 NaN 1 Median NaN NaN NaN 0 0 Median 0.43409 0.57054 NaN 1 0 Median 4323300 3202200 1121100 0 0 0 4323300 3202200 1121100 7689 288 7860 28111 42459 42459 112 1 LNTTTMSNATANSSIRPIFGGTVYHSPVSR KRRGLAPNTPGKARKLNTTTMSNATANSSI RPIFGGTVYHSPVSRLPPSGSKPVAASTCS K L N S R L 2 2 3 0 0 0 0 2 1 2 1 0 1 1 2 5 5 0 1 2 0 0 30 1 3178.5829 A0A024RC67;O43663;G3V3N7 A0A024RC67 488 517 PRC1 Protein regulator of cytokinesis 1 yes no 4 2.3865E-07 51.568 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11995000 11995000 0 0 0 0 11995000 11995000 0 7690 288 7861 28112 42460 42460 112 1 LNVLEK VVQELQQAISKLEARLNVLEKSSPGHRATA QAISKLEARLNVLEKSSPGHRATAPQTQHV R L N E K S 0 0 1 0 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 6 0 714.42759 E9PK01;P29692;E9PMW7;E9PPR1;E9PL12;E9PQ49;E9PI39;D3DWK1;B2RAR6;E9PRY8;E9PN91;E9PIZ1;E9PL71;H0YCK7;Q9BW34;A0A087X1X7;Q71RH4;Q9H7G6;E9PQZ1;E9PK06 E9PK01 112 117 EEF1D Elongation factor 1-delta yes no 2 0.041726 107.74 1 0.96735 1.2479 NaN 1 Median 0.96735 1.2479 NaN 1 0 Median NaN NaN NaN 0 0 Median 51934000 24934000 27000000 51934000 24934000 27000000 0 0 0 7691 1035 7862 28113 42461 42461 1 LNVSQDDVLYALK LLVEPSRNDLLLRVRLNVSQDDVLYALKDE VRLNVSQDDVLYALKDE_____________ R L N L K D 1 0 1 2 0 1 0 0 0 0 3 1 0 0 0 1 0 0 1 2 0 0 13 0 1476.7824 B7Z8H0;Q96F82;A8K794;Q13415 B7Z8H0 842 854 ORC1L;ORC1 Origin recognition complex subunit 1 yes no 2 0.0081392 72.531 1 1 0.60041 0.73906 NaN 1 Median 0.60041 0.73906 NaN 1 0 Median NaN NaN NaN 0 0 Median 7321500 7008500 312980 1401900 1088900 312980 5919600 5919600 0 7692 630 7863 28114;28115 42462;42463;42464 42464 3 LNYEENKEESLLEK AVKRLKEKLEAEMKKLNYEENKEESLLEKR KLNYEENKEESLLEKRRQLSRDIGRLKETY K L N E K R 0 0 2 0 0 0 5 0 0 0 3 2 0 0 0 1 0 0 1 0 0 0 14 1 1736.8469 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 468 481 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2;3 8.7259E-73 246.51 6 2 0.65406 0.84954 11.876 7 Median 0.68068 0.83581 7.1085 5 0 Median 0.65014 1.0425 0.56001 2 0 Median 193880000 122860000 71021000 142940000 91758000 51182000 50937000 31099000 19839000 7693 50 7864 28116;28117;28118;28119;28120;28121;28122;28123 42465;42466;42467;42468;42469;42470;42471;42472;42473;42474;42475;42476;42477 42469 13 LNYEHDNISLK SWIAYSTVSRFFLYRLNYEHDNISLKRVSK FLYRLNYEHDNISLKRVSKMPAFLRSALQI R L N L K R 0 0 2 1 0 0 1 0 1 1 2 1 0 0 0 1 0 0 1 0 0 0 11 0 1344.6674 Q969X6;H3BSH7;A0A0J9YWM9;H3BRM8;A0A0J9YWK2 Q969X6 418 428 CIRH1A Cirhin yes no 2;3 9.7146E-19 181.87 5 1 1.0138 1.2766 27.437 4 Median 1.1347 1.4412 17.546 3 0 Median 0.58057 0.86024 NaN 1 0 Median 36864000 19588000 17276000 29501000 14835000 14665000 7363600 4752800 2610800 7694 1680 7865 28124;28125;28126;28127;28128;28129 42478;42479;42480;42481;42482;42483 42478 6 LNYLDPR TDREENKQIALGTSKLNYLDPRITVAWCKK QIALGTSKLNYLDPRITVAWCKKWGVPIEK K L N P R I 0 1 1 1 0 0 0 0 0 0 2 0 0 0 1 0 0 0 1 0 0 0 7 0 889.46577 P11387;B9EG90;Q9BVT2;B7Z9E8;B4DYD2;E5KMK7;E5KMK6;E5KMK5;Q969P6;B4E061;Q8TBP3;H0YAR3 P11387 721 727 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 2 0.010633 107.43 1 0.74514 1.0378 NaN 1 Median 0.74514 1.0378 NaN 1 0 Median NaN NaN NaN 0 0 Median 88017000 46249000 41768000 88017000 46249000 41768000 0 0 0 7695 1255 7866 28130 42484;42485 42484 2 LNYLLR FSNKGADVFLEALARLNYLLRVNGSEQTVV DVFLEALARLNYLLRVNGSEQTVVAFFIMP R L N L R V 0 1 1 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 1 0 0 0 6 0 790.47012 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6 P13807 349 354 GYS1 Glycogen [starch] synthase, muscle yes no 2 0.019658 134.24 2 2 0.78417 1.0468 9.3503 2 Median 0.78417 1.0468 9.3503 2 0 Median NaN NaN NaN 0 0 Median 33950000 25777000 8172500 20391000 12218000 8172500 13559000 13559000 0 7696 1265 7867 28131;28132;28133;28134 42486;42487;42488;42489;42490 42486 5 LPAAGVGDMVMATVK LYIISVKGIKGRLNRLPAAGVGDMVMATVK LPAAGVGDMVMATVKKGKPELRKKVHPAVV R L P V K K 3 0 0 1 0 0 0 2 0 0 1 1 2 0 1 0 1 0 0 3 0 0 15 0 1458.7575 Q9BTQ7;A0A024R1Q8;P62829;J3KT29;C9JD32;B9ZVP7 Q9BTQ7 46 60 RPL23 60S ribosomal protein L23 yes no 2 3.4351E-09 136.27 6 2 0.55788 0.8919 15.653 3 Median 0.9441 1.1391 NaN 1 0 Median 0.55384 0.87125 3.3121 2 0 Median 1057700000 659750000 397990000 37506000 12424000 25081000 1020200000 647330000 372910000 7697 63 7868;7869 28135;28136;28137;28138;28139;28140;28141;28142 42491;42492;42493;42494;42495;42496;42497;42498 42492 40;41 8 LPACVVDCGTGYTK ______________________________ RLPACVVDCGTGYTKLGYAGNTEPQFIIPS R L P T K L 1 0 0 1 2 0 0 2 0 0 1 1 0 0 1 0 2 0 1 2 0 0 14 0 1539.7061 A0A024RAI1;P61158;F8WEW2;F8WE84 A0A024RAI1 5 18 ACTR3 Actin-related protein 3 yes no 2 1.4983E-06 141.71 4 1.2569 1.6206 17.187 4 Median 1.2569 1.6206 17.187 4 0 Median NaN NaN NaN 0 0 Median 20764000 9022200 11741000 20764000 9022200 11741000 0 0 0 7698 243 7870 28143;28144;28145;28146 42499;42500;42501;42502;42503;42504;42505;42506 42505 8 LPAIALDLLR NVLKMAASSVKKDRKLPAIALDLLRLALKE KKDRKLPAIALDLLRLALKEDKFPRFWKEV K L P L R L 2 1 0 1 0 0 0 0 0 1 4 0 0 0 1 0 0 0 0 0 0 0 10 0 1093.6859 Q9BQG0;I3L1L3;B4DZZ1 Q9BQG0 264 273 MYBBP1A Myb-binding protein 1A yes no 2 4.7885E-05 120.87 5 2 0.72022 0.95592 17.261 4 Median 0.76207 0.99766 19.182 3 0 Median 0.66071 0.91592 NaN 1 0 Median 58117000 32889000 25229000 44093000 25985000 18108000 14024000 6903600 7120700 7699 1708 7871 28147;28148;28149;28150;28151;28152;28153 42507;42508;42509;42510;42511;42512;42513;42514;42515;42516 42511 10 LPATIAR QLEELLSDMKADVTRLPATIARIPPVAVRL DMKADVTRLPATIARIPPVAVRLQMSERNI R L P A R I 2 1 0 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 7 0 740.45447 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 1845 1851 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.043339 53.554 1 1.11 1.7059 NaN 1 Median NaN NaN NaN 0 0 Median 1.11 1.7059 NaN 1 0 Median 18664000 9037800 9626400 0 0 0 18664000 9037800 9626400 7700 428 7872 28154 42517;42518 42517 2 LPAVSSVACGASVGYAVTK GEGAEEKSIPTLISRLPAVSSVACGASVGY SSVACGASVGYAVTKDGRVFAWGMGTNYQL R L P T K D 4 0 0 0 1 0 0 2 0 0 1 1 0 0 1 3 1 0 1 4 0 0 19 0 1835.9451 Q5T081;A0A0S2Z3I4;A0A0S2Z404;P18754 Q5T081 344 362 RCC1 Regulator of chromosome condensation yes no 2 1.3013E-62 217.19 4 2 0.96957 1.2168 32.109 6 Median 1.0103 1.2737 5.0659 4 0 Median 0.43556 0.67939 8.9834 2 0 Median 147660000 88290000 59366000 89309000 48176000 41133000 58347000 40114000 18233000 7701 453 7873 28155;28156;28157;28158;28159;28160 42519;42520;42521;42522;42523;42524;42525;42526;42527;42528;42529;42530;42531 42523 13 LPDFSYCILER RYRALIGQEGDPDLKLPDFSYCILERLGRS PDLKLPDFSYCILERLGRSRWQGELQRDLH K L P E R L 0 1 0 1 1 0 1 0 0 1 2 0 0 1 1 1 0 0 1 0 0 0 11 0 1411.6806 Q6AHZ7;Q12789 Q6AHZ7 173 183 DKFZp686A111;GTF3C1 General transcription factor 3C polypeptide 1 yes no 2 0.0029529 99.973 4 0.49252 0.67857 3.3079 2 Median 0.49252 0.67857 3.3079 2 0 Median NaN NaN NaN 0 0 Median 23705000 17208000 6496400 23705000 17208000 6496400 0 0 0 7702 1457 7874 28161;28162;28163;28164 42532;42533;42534;42535;42536;42537 42532 6 LPDIFEAQIAGLR KWTLLQEQKSAKSSRLPDIFEAQIAGLRGQ SRLPDIFEAQIAGLRGQLEALQVDGGRLEA R L P L R G 2 1 0 1 0 1 1 1 0 2 2 0 0 1 1 0 0 0 0 0 0 0 13 0 1441.7929 CON__P08729;CON__Q3KNV1;P08729;B3KY79 CON__Q3KNV1 137 149 KRT7 Keratin, type II cytoskeletal 7 no no 2 9.1558E-30 211.86 3 2 0.30272 0.41467 97.398 5 Median 0.28455 0.39672 3.6158 3 0 Median 1.4585 2.3599 2.2756 2 0 Median 289680000 176010000 113670000 173820000 132360000 41457000 115860000 43644000 72211000 + 7703 968;957 7875 28165;28166;28167;28168;28169 42538;42539;42540;42541;42542;42543;42544;42545;42546 42540 9 LPDNYTQDTWR GSKKLVIKNFRDRPRLPDNYTQDTWRKLHE DRPRLPDNYTQDTWRKLHEAVRAVQSSTSI R L P W R K 0 1 1 2 0 1 0 0 0 0 1 0 0 0 1 0 2 1 1 0 0 0 11 0 1407.6419 Q13619;A0A087WWN2 Q13619 54 64 CUL4A Cullin-4A yes no 2 0.0093806 50.108 2 0.42009 0.54663 4.499 2 Median NaN NaN NaN 0 0 Median 0.42009 0.54663 4.499 2 0 Median 9494300 6431700 3062600 0 0 0 9494300 6431700 3062600 7704 1474 7876 28170;28171 42547;42548 42547 2 LPEASQSPLVLK LPINSAAIKAECTARLPEASQSPLVLKQAV TARLPEASQSPLVLKQAVRKPLEAVLRYLE R L P L K Q 1 0 0 0 0 1 1 0 0 0 3 1 0 0 2 2 0 0 0 1 0 0 12 0 1280.734 E7ESY4;Q13330;A0A024R6P5;Q59FW1;H0Y4T7;Q9BRL8;F8W9Y9 E7ESY4 516 527 MTA1 Metastasis-associated protein MTA1 yes no 2 0.00082784 110.93 2 0.69998 0.89171 4.3123 2 Median 0.69998 0.89171 4.3123 2 0 Median NaN NaN NaN 0 0 Median 19334000 11092000 8241700 19334000 11092000 8241700 0 0 0 7705 1014 7877 28172;28173 42549;42550;42551 42549 3 LPEDPLLSGLLDSPALK LQLELAQVLAQERPKLPEDPLLSGLLDSPA EDPLLSGLLDSPALKACLDTAVENMPSLKM K L P L K A 1 0 0 2 0 0 1 1 0 0 6 1 0 0 3 2 0 0 0 0 0 0 17 0 1776.9873 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1209 1225 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 3.162E-78 226.59 5 0.69236 0.87316 6.5323 3 Median 0.69236 0.87316 6.5323 3 0 Median NaN NaN NaN 0 0 Median 49865000 25174000 24691000 49865000 25174000 24691000 0 0 0 7706 486 7878 28174;28175;28176;28177;28178 42552;42553;42554;42555;42556;42557;42558;42559 42555 8 LPEELGR DAKEIFGRIQDKHKKLPEELGRDQNTVETL RIQDKHKKLPEELGRDQNTVETLQRMHTTF K L P G R D 0 1 0 0 0 0 2 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 7 0 812.43922 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24 B2ZZ89 1828 1834 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.015413 88.734 1 0.77349 1.1989 NaN 1 Median NaN NaN NaN 0 0 Median 0.77349 1.1989 NaN 1 0 Median 27773000 15425000 12348000 0 0 0 27773000 15425000 12348000 7707 346 7879 28179 42560 42560 1 LPEHPEGGEPEDDEAPAK RHSEVETDSKKKKMKLPEHPEGGEPEDDEA HPEGGEPEDDEAPAKGKFNWKGTIKAILKQ K L P A K G 2 0 0 2 0 0 5 2 1 0 1 1 0 0 4 0 0 0 0 0 0 0 18 0 1915.8436 Q9NX58;A8K3Y5 Q9NX58 289 306 LYAR Cell growth-regulating nucleolar protein yes no 3 6.0101E-05 90.706 4 2 0.99084 1.2542 13.848 6 Median 0.99938 1.2706 6.5436 4 0 Median 0.67617 1.017 3.9012 2 0 Median 83710000 40991000 42719000 59777000 27225000 32552000 23933000 13766000 10167000 7708 1766 7880 28180;28181;28182;28183;28184;28185 42561;42562;42563;42564;42565;42566;42567;42568;42569;42570 42563 10 LPEIEEYYDGNTSSNSR AEWHDSDWILSVPAKLPEIEEYYDGNTSSN EIEEYYDGNTSSNSRQRSGWSSGRSGRSGR K L P S R Q 0 1 2 1 0 0 3 1 0 1 1 0 0 0 1 3 1 0 2 0 0 0 17 0 1972.865 Q9BQ39;B4DW97;A0A087WVC1;K0J110;Q9NTA9 Q9BQ39 661 677 DDX50;mcdrh;DKFZp761E0323 ATP-dependent RNA helicase DDX50 yes no 2 4.3437E-25 166.62 3 1.0909 1.5153 10.569 2 Median 1.0909 1.5153 10.569 2 0 Median NaN NaN NaN 0 0 Median 4920700 3195400 1725300 4920700 3195400 1725300 0 0 0 7709 1707 7881 28186;28187;28188 42571;42572;42573;42574;42575 42573 5 LPELEQLER ______________________________ ERIEDRLPELEQLERIGLFSHAEIKAIIKK R L P E R I 0 1 0 0 0 1 3 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 9 0 1125.603 B3KQ21;Q9NYH9;B4DSL9;B7Z9G4 B3KQ21 13 21 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 0.031539 44.203 1 0.88563 1.1962 NaN 1 Median 0.88563 1.1962 NaN 1 0 Median NaN NaN NaN 0 0 Median 6720600 3801400 2919200 6720600 3801400 2919200 0 0 0 7710 768 7882 28189 42576 42576 1 LPEPTTR WQLPTERVEEAIVARLPEPTTRLPREKPLP VEEAIVARLPEPTTRLPREKPLPRPRPLTR R L P T R L 0 1 0 0 0 0 1 0 0 0 1 0 0 0 2 0 2 0 0 0 0 0 7 0 812.43922 Q15050 Q15050 92 98 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 0.0092691 118.69 3 2 0.77349 1.0718 7.4729 5 Median 0.76551 1.0667 5.0397 3 0 Median 0.79398 1.1635 4.236 2 0 Median 199180000 111740000 87448000 160170000 89808000 70365000 39010000 21928000 17083000 7711 1503 7883 28190;28191;28192;28193;28194 42577;42578;42579;42580;42581;42582 42577 6 LPEQESLPNDNK STFTICEDIKSSKCKLPEQESLPNDNKDIL KCKLPEQESLPNDNKDILQRLDPSSFSTKH K L P N K D 0 0 2 1 0 1 2 0 0 0 2 1 0 0 2 1 0 0 0 0 0 0 12 0 1382.6678 B2R6H3;Q8NI77 B2R6H3 783 794 KIF18A Kinesin-like protein;Kinesin-like protein KIF18A yes no 2 0.014398 86.344 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2648200 2648200 0 2648200 2648200 0 0 0 0 7712 699 7884 28195;28196 42583;42584 42584 2 LPETNLFETEETRK RINMVEELEKALGMKLPETNLFETEETRKI KLPETNLFETEETRKILDDICVAKAVECPP K L P R K I 0 1 1 0 0 0 4 0 0 0 2 1 0 1 1 0 3 0 0 0 0 0 14 1 1705.8523 Q15046;Q6ZTI3 Q15046 408 421 KARS Lysine--tRNA ligase yes no 3 0.019936 44.457 2 0.42908 0.56688 24.559 2 Median 0.42908 0.56688 24.559 2 0 Median NaN NaN NaN 0 0 Median 23694000 16748000 6945600 23694000 16748000 6945600 0 0 0 7713 1502 7885 28197;28198 42585;42586;42587 42587 3 LPEVQQATK TSVQAKGTNKLRKPKLPEVQQATKAPESSD KLRKPKLPEVQQATKAPESSDDSEDSSDSS K L P T K A 1 0 0 0 0 2 1 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 9 0 1012.5553 E7ETY2;B4DRA2;J3KQ96;Q13428 E7ETY2 1129 1137 TCOF1 Treacle protein no no 2 0.0034018 104.06 1 1 0.86196 1.1807 29.986 2 Median 0.75222 0.95512 NaN 1 0 Median 0.98771 1.4596 NaN 1 0 Median 14885000 7444800 7440700 5251100 2907400 2343700 9634300 4537300 5097000 7714 1016;1135;1469 7886 28199;28200 42588;42589;42590 42588 3 LPFAAAQIGNSFR IFLNFKRLLEFNQGKLPFAAAQIGNSFRNE GKLPFAAAQIGNSFRNEISPRSGLIRVREF K L P F R N 3 1 1 0 0 1 0 1 0 1 1 0 0 2 1 1 0 0 0 0 0 0 13 0 1390.7357 A0A090N8G0;P41250;Q75MN1 A0A090N8G0 265 277 GARS Glycine--tRNA ligase yes no 2 8.8787E-06 106.29 3 0.79645 1.1011 NaN 1 Median 0.79645 1.1011 NaN 1 0 Median NaN NaN NaN 0 0 Median 14601000 5144900 9456400 14601000 5144900 9456400 0 0 0 7715 382 7887 28201;28202;28203 42591;42592;42593 42592 3 LPFLGLALSSR LRKLLNFYEKQEGEKLPFLGLALSSRKNLC EGEKLPFLGLALSSRKNLCIHPEVTPLRFG K L P S R K 1 1 0 0 0 0 0 1 0 0 4 0 0 1 1 2 0 0 0 0 0 0 11 0 1172.6917 A8MX75;P18074;E7EVE9;K7EIT8;Q2TB79;K7ENL1;B4E0F6 A8MX75 78 88 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit yes no 2 0.0013786 78.939 2 0.48918 0.66154 NaN 1 Median 0.48918 0.66154 NaN 1 0 Median NaN NaN NaN 0 0 Median 4447900 3213800 1234100 4447900 3213800 1234100 0 0 0 7716 660 7888 28204;28205 42594;42595;42596 42596 3 LPFPIIDDR SKDINAYNCEEPTEKLPFPIIDDRNRELAI EEPTEKLPFPIIDDRNRELAILLGMLDPAE K L P D R N 0 1 0 2 0 0 0 0 0 2 1 0 0 1 2 0 0 0 0 0 0 0 9 0 1084.5917 V9HWC7;P30041;A4UCS6 V9HWC7 98 106 HEL-S-128m;PRDX6 Peroxiredoxin-6 yes no 2 0.012958 82.452 3 0.54662 0.76861 0.61601 3 Median 0.54662 0.76861 0.61601 3 0 Median NaN NaN NaN 0 0 Median 11442000 7287400 4154800 11442000 7287400 4154800 0 0 0 7717 1304 7889 28206;28207;28208 42597;42598;42599;42600;42601;42602 42601 6 LPFTDTEQECLVK YEVCQEMGLMEDLLKLPFTDTEQECLVKFL LKLPFTDTEQECLVKFLQSSASVQNHEFLL K L P V K F 0 0 0 1 1 1 2 0 0 0 2 1 0 1 1 0 2 0 0 1 0 0 13 0 1578.76 Q8WYP5;B3KVE5 Q8WYP5 928 940 AHCTF1 Protein ELYS yes no 2 2.319E-05 126.71 3 1 1.2185 1.4209 28.16 4 Linear 0.9061 1.1562 13.87 3 0 Plateau 0.41517 0.62397 NaN 1 0 Median 40069000 23277000 16791000 32243000 18285000 13957000 7826100 4992400 2833800 7718 1670 7890 28209;28210;28211;28212 42603;42604;42605;42606;42607;42608;42609;42610;42611 42604 9 LPFTPLSYIQGLSHR MGMFNSIFDGRVVAKLPFTPLSYIQGLSHR LPFTPLSYIQGLSHRNLLGDDTTDCSFIFL K L P H R N 0 1 0 0 0 1 0 1 1 1 3 0 0 1 2 2 1 0 1 0 0 0 15 0 1727.9359 J3QQY2;J3KS45;B7Z591;J9JIE6;Q9UM00 J3QQY2 33 47 TMCO1 Transmembrane and coiled-coil domain-containing protein 1 yes no 3 7.2522E-06 120.29 3 0.60807 0.85614 19.408 2 Median 0.60807 0.85614 19.408 2 0 Median NaN NaN NaN 0 0 Median 9977200 5418600 4558600 9977200 5418600 4558600 0 0 0 7719 911 7891 28213;28214;28215 42612;42613;42614;42615 42614 4 LPGEGNAGLLGLGPEAAAPGK ______________________________ AGLLGLGPEAAAPGKRIRKPSLLYEGFESP K L P G K R 4 0 1 0 0 0 2 6 0 0 4 1 0 0 3 0 0 0 0 0 0 0 21 0 1888.0054 A0A024RCR5;A0A0G2JK44;P25440;H0Y6K2;A0A140T9E9;A0A140T9V2;U3KQA6;A0A0G2JHL0;A0A140T9F7;E9PIQ3;E9PKQ9;H0Y799;A0A140T9X8 A0A024RCR5 11 31 BRD2 Bromodomain-containing protein 2 yes no 2 6.2769E-06 89.506 4 0.66454 0.8534 9.6911 3 Median 0.66454 0.8534 9.6911 3 0 Median NaN NaN NaN 0 0 Median 14263000 7135500 7127800 14263000 7135500 7127800 0 0 0 7720 300 7892 28216;28217;28218;28219 42616;42617;42618;42619;42620 42618 5 LPGELEPVQATQNK ELAEQLGLSTGEKEKLPGELEPVQATQNKT KLPGELEPVQATQNKTGKYVPPSLRDGASR K L P N K T 1 0 1 0 0 2 2 1 0 0 2 1 0 0 2 0 1 0 0 1 0 0 14 0 1522.7991 Q6IAM0;O75821;K7EP16;K7ER90;K7EL20 Q6IAM0 196 209 EIF3G Eukaryotic translation initiation factor 3 subunit G yes no 2 5.1663E-08 139.32 3 1 0.28745 0.35887 NaN 1 Median 0.28745 0.35887 NaN 1 0 Median NaN NaN NaN 0 0 Median 5407600 3440200 1967400 3678000 3440200 237740 1729600 0 1729600 7721 1209 7893 28220;28221;28222;28223 42621;42622;42623;42624 42621 4 LPGGELNPGEDEVEGLK LPHVLLLQLGTTFFKLPGGELNPGEDEVEG GGELNPGEDEVEGLKRLMTEILGRQDGVLQ K L P L K R 0 0 1 1 0 0 4 4 0 0 3 1 0 0 2 0 0 0 0 1 0 0 17 0 1751.8578 H3BND3;B2R6U8;A0A024R6W2;O43809;H3BV41 H3BND3 40 56 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes no 2 3.4068E-06 101.53 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2206300 2206300 0 2206300 2206300 0 0 0 0 7722 165 7894 28224;28225 42625;42626 42626 2 LPGGHQTVLFSATLPK FEMGFAEQLQEIIARLPGGHQTVLFSATLP PGGHQTVLFSATLPKLLVEFARAGLTEPVL R L P P K L 1 0 0 0 0 1 0 2 1 0 3 1 0 1 2 1 2 0 0 1 0 0 16 0 1664.925 Q8TDD1;F8VRX4 Q8TDD1 268 283 DDX54 ATP-dependent RNA helicase DDX54 yes no 3 0.00023854 88.311 3 2 0.86198 1.0928 14.595 5 Median 0.86754 1.096 1.403 3 0 Median 0.566 0.85014 5.7731 2 0 Median 72836000 38010000 34826000 44726000 21183000 23543000 28110000 16827000 11283000 7723 1658 7895 28226;28227;28228;28229;28230 42627;42628;42629;42630;42631;42632;42633;42634;42635 42627 9 LPGGPTLTFQVK ILSKTETNVYFKLMRLPGGPTLTFQVKKYS LMRLPGGPTLTFQVKKYSLVRDVVSSLRRH R L P V K K 0 0 0 0 0 1 0 2 0 0 2 1 0 1 2 0 2 0 0 1 0 0 12 0 1256.7129 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;C9J3W3;C9JHF7 A0A0A6YYI3 102 113 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 1.603E-11 155.11 4 2 0.82836 0.97242 8.9341 4 Linear 0.78921 0.97683 2.2791 3 0 Plateau 0.54858 0.82709 NaN 1 0 Median 193680000 114860000 78828000 162930000 89788000 73144000 30751000 25068000 5683500 7724 408 7896 28231;28232;28233;28234;28235;28236 42636;42637;42638;42639;42640;42641;42642 42636 7 LPGHAGSINEVAFHPDEPIIISASSDK FVYVWDTTSRRILYKLPGHAGSINEVAFHP FHPDEPIIISASSDKRLYMGEIQ_______ K L P D K R 3 0 1 2 0 0 2 2 2 4 1 1 0 1 3 4 0 0 0 1 0 0 27 0 2800.4032 B2R9I9;A0MNP2;Q96DI7;Q9NSS8 B2R9I9 323 349 WDR57;SNRNP40;DKFZp434D199 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 4 8.7077E-05 66.609 4 1 0.78921 1.0147 35.285 5 Median 0.73715 0.92962 24.214 4 0 Median 1.1192 1.6975 NaN 1 0 Median 73304000 40483000 32821000 59686000 34808000 24877000 13618000 5674400 7943700 7725 530 7897 28237;28238;28239;28240;28241 42643;42644;42645;42646;42647;42648 42644 6 LPGLQATVR IATIHSRLQDSQLWKLPGLQATVRLAWALA DSQLWKLPGLQATVRLAWALALRGISQLPD K L P V R L 1 1 0 0 0 1 0 1 0 0 2 0 0 0 1 0 1 0 0 1 0 0 9 0 953.56581 Q92621;B4DM61 Q92621 322 330 NUP205 Nuclear pore complex protein Nup205 yes no 2 0.04075 47.869 1 0.26189 0.36111 NaN 1 Median 0.26189 0.36111 NaN 1 0 Median NaN NaN NaN 0 0 Median 3925200 2881700 1043500 3925200 2881700 1043500 0 0 0 7726 1673 7898 28242 42649 42649 1 LPHLPGLEDLGIQATPLELK ITRDKVERMHITDMKLPHLPGLEDLGIQAT GLEDLGIQATPLELKAIEVLRRHRTYRWLS K L P L K A 1 0 0 1 0 1 2 2 1 1 6 1 0 0 3 0 1 0 0 0 0 0 20 0 2153.2096 F5H0J3;Q9BTT5;A8K4V2;Q16795 F5H0J3 88 107 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes no 3 0.00030116 87.668 2 0.47867 0.61245 NaN 1 Median 0.47867 0.61245 NaN 1 0 Median NaN NaN NaN 0 0 Median 5963300 4584900 1378400 5963300 4584900 1378400 0 0 0 7727 609 7899 28243;28244 42650;42651;42652 42651 3 LPHSVTCSLCGEVDQNEETQDFEK RMKQSCVLRQCLAPRLPHSVTCSLCGEVDQ CGEVDQNEETQDFEKKLMECCICNEIVHPG R L P E K K 0 0 1 2 2 2 4 1 1 0 2 1 0 1 1 2 2 0 0 2 0 0 24 0 2821.2171 I3VM54;I3VM53;Q9Y2K7;B4DSG1 I3VM54 597 620 KDM2A Lysine-specific demethylase 2A yes no 3 1.4797E-40 158.33 4 1 0.50459 0.63903 26.116 5 Median 0.51244 0.64119 26.928 4 0 Median 0.35678 0.53192 NaN 1 0 Median 51485000 33328000 18157000 43924000 27599000 16325000 7560600 5728700 1831800 7728 1128 7900 28245;28246;28247;28248;28249 42653;42654;42655;42656;42657;42658;42659;42660 42656 8 LPHVLLLQLGTTFFK MRRTVEGVLIVHEHRLPHVLLLQLGTTFFK LPHVLLLQLGTTFFKLPGGELNPGEDEVEG R L P F K L 0 0 0 0 0 1 0 1 1 0 5 1 0 2 1 0 2 0 0 1 0 0 15 0 1726.0182 H3BND3;B2R6U8;A0A024R6W2;O43809;H3BV41 H3BND3 25 39 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes no 3 3.078E-05 64.798 1 0.3513 0.45365 NaN 1 Median 0.3513 0.45365 NaN 1 0 Median NaN NaN NaN 0 0 Median 5926400 4027300 1899100 5926400 4027300 1899100 0 0 0 7729 165 7901 28250 42661;42662;42663 42661 3 LPIEPR DANDELTPLGRILAKLPIEPRFGKMMIMGC TPLGRILAKLPIEPRFGKMMIMGCIFYVGD K L P P R F 0 1 0 0 0 0 1 0 0 1 1 0 0 0 2 0 0 0 0 0 0 0 6 0 723.42792 Q08211;B3KU66 Q08211 858 863 DHX9 ATP-dependent RNA helicase A yes no 2 0.037527 80.377 1 0.71224 0.94888 NaN 1 Median 0.71224 0.94888 NaN 1 0 Median NaN NaN NaN 0 0 Median 25400000 14500000 10900000 25400000 14500000 10900000 0 0 0 7730 1448 7902 28251 42664 42664 1 LPIFFFGTHETAFLGPK VDEVPDGAVKPPTNKLPIFFFGTHETAFLG IFFFGTHETAFLGPKDIFPYSENKEKYGKP K L P P K D 1 0 0 0 0 0 1 2 1 1 2 1 0 4 2 0 2 0 0 0 0 0 17 0 1921.0138 O75475;Q05CM9 O75475 40 56 PSIP1 PC4 and SFRS1-interacting protein yes no 2;3 9.6936E-10 120.54 6 2 0.91882 1.1367 28.626 7 Median 0.923 1.1824 34.975 5 0 Median 0.6599 1.0433 1.1443 2 0 Median 457000000 257590000 199400000 213830000 111510000 102320000 243170000 146080000 97089000 7731 1201 7903 28252;28253;28254;28255;28256;28257;28258;28259 42665;42666;42667;42668;42669;42670;42671;42672;42673;42674;42675;42676;42677;42678;42679 42668 14 LPIMQMRK EPVCVVLKKSPQLLKLPIMQMRKRSSYLQK KSPQLLKLPIMQMRKRSSYLQKLGLG____ K L P R K R 0 1 0 0 0 1 0 0 0 1 1 1 2 0 1 0 0 0 0 0 0 0 8 1 1015.5671 C9JX74;B5MBW3;E7EW93;B4DKD5;H7C316;Q7Z6M4 C9JX74 133 140 MTERF4 Transcription termination factor 4, mitochondrial;mTERF domain-containing protein 2 processed yes no 2 0.021075 50.539 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7732 818 7904 28260 42680 42680 292;293 1 LPISDSPPDTQEIHVIEQEK EVGVLKESVDLPEEKLPISDSPPDTQEIHV SPPDTQEIHVIEQEKLEAQDSGEEARNLSF K L P E K L 0 0 0 2 0 2 3 0 1 3 1 1 0 0 3 2 1 0 0 1 0 0 20 0 2274.138 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1508 1527 AHCTF1 Protein ELYS yes no 3 0.00083971 33.667 2 1.0582 1.3726 30.92 2 Median 1.0582 1.3726 30.92 2 0 Median NaN NaN NaN 0 0 Median 7982800 3840000 4142800 7982800 3840000 4142800 0 0 0 7733 1670 7905 28261;28262 42681;42682;42683 42682 3 LPITCLTIPPR LLNDEFFTSGYIPARLPITCLTIPPRFSIA IPARLPITCLTIPPRFSIAPSSLDPSNRKP R L P P R F 0 1 0 0 1 0 0 0 0 2 2 0 0 0 3 0 2 0 0 0 0 0 11 0 1279.7322 B2R841;P53350;B4E083;Q59GD0;D3DWF3;I3L2H5 B2R841 314 324 PLK1 Serine/threonine-protein kinase PLK;Serine/threonine-protein kinase PLK1 yes no 2 0.0052131 92.051 3 0.77941 1.0521 NaN 1 Median 0.77941 1.0521 NaN 1 0 Median NaN NaN NaN 0 0 Median 3901200 1903600 1997500 3901200 1903600 1997500 0 0 0 7734 714 7906 28263;28264;28265 42684;42685;42686 42686 3 LPIVNDCDELVAIIAR LKEANEILQRSKKGKLPIVNDCDELVAIIA PIVNDCDELVAIIARTDLKKNRDYPLASKD K L P A R T 2 1 1 2 1 0 1 0 0 3 2 0 0 0 1 0 0 0 0 2 0 0 16 0 1809.9659 B4DNJ7;B3KRZ3;Q6ZNB1;Q5H9Q6;P20839;A0A024R725;C9J381;C9K0R9 B4DNJ7 209 224 IMPDH;DKFZp781N0678;IMPDH1 Inosine-5-monophosphate dehydrogenase;Inosine-5-monophosphate dehydrogenase 1 yes no 2 1.8827E-06 109.16 1 0.59769 0.77916 NaN 1 Median 0.59769 0.77916 NaN 1 0 Median NaN NaN NaN 0 0 Median 756110 601160 154960 756110 601160 154960 0 0 0 7735 772 7907 28266 42687 42687 0 LPIVNEDDELVAIIAR LKEANEILQRSKKGKLPIVNEDDELVAIIA PIVNEDDELVAIIARTDLKKNRDYPLASKD K L P A R T 2 1 1 2 0 0 2 0 0 3 2 0 0 0 1 0 0 0 0 2 0 0 16 0 1778.9778 P12268;H0Y4R1;B7Z1G4;Q6QE17;E7ETK5;Q6RUP9 P12268 209 224 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2 6.0697E-54 195.72 4 0.36985 0.49765 8.8755 4 Median 0.36985 0.49765 8.8755 4 0 Median NaN NaN NaN 0 0 Median 84783000 61423000 23360000 84783000 61423000 23360000 0 0 0 7736 1261 7908 28267;28268;28269;28270 42688;42689;42690;42691 42690 4 LPLAQVSAHPWVR QDLISKLLRHNPSERLPLAQVSAHPWVRAN ERLPLAQVSAHPWVRANSRRVLPPSALQSV R L P V R A 2 1 0 0 0 1 0 0 1 0 2 0 0 0 2 1 0 1 0 2 0 0 13 0 1472.8252 B2RC06;J3KT86;Q96GD4 B2RC06 316 328 AURKB Aurora kinase B no no 3 5.8717E-05 71.548 2 0.54774 0.86859 2.2809 2 Median NaN NaN NaN 0 0 Median 0.54774 0.86859 2.2809 2 0 Median 75292000 49569000 25723000 0 0 0 75292000 49569000 25723000 7737 731;1686 7909 28271;28272 42692;42693;42694 42692 3 LPLATIVK PKAAKTPLKIHPLVRLPLATIVKDLVAQAP KIHPLVRLPLATIVKDLVAQAPLKPKTPRG R L P V K D 1 0 0 0 0 0 0 0 0 1 2 1 0 0 1 0 1 0 0 1 0 0 8 0 853.56369 A0A024R534;O94776 A0A024R534 515 522 MTA2 Metastasis-associated protein MTA2 yes no 2 0.0064099 83.753 2 0.72452 0.89353 4.2358 2 Median 0.72452 0.89353 4.2358 2 0 Median NaN NaN NaN 0 0 Median 64735000 34170000 30565000 64735000 34170000 30565000 0 0 0 7738 133 7910 28273;28274 42695;42696;42697 42696 3 LPLETAYR QVATGGVIDPQHHHRLPLETAYRRGCLHKD DPQHHHRLPLETAYRRGCLHKDIYALISDQ R L P Y R R 1 1 0 0 0 0 1 0 0 0 2 0 0 0 1 0 1 0 1 0 0 0 8 0 961.52328 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 2025 2032 EPPK1 Epiplakin no no 2 0.03881 50.127 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7739 373;1386 7911 28275 42698 42698 1 LPLFGLGR ADVRRESRLLQLLGRLPLFGLGRLVTRKSW LLQLLGRLPLFGLGRLVTRKSWLWQHDEPC R L P G R L 0 1 0 0 0 0 0 2 0 0 3 0 0 1 1 0 0 0 0 0 0 0 8 0 871.52797 C9JJ19;P82930;A4UCR9 C9JJ19 71 78 MRPS34 28S ribosomal protein S34, mitochondrial yes no 2 0.021773 88.734 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1986500 1986500 0 1986500 1986500 0 0 0 0 7740 939 7912 28276;28277 42699;42700 42700 2 LPLFPEPLHVFAPR TRRRAIILAAAPGEKLPLFPEPLHVFAPRA KLPLFPEPLHVFAPRACQLSVVVDDKKFVS K L P P R A 1 1 0 0 0 0 1 0 1 0 3 0 0 2 4 0 0 0 0 1 0 0 14 0 1631.9188 A0A024R7E3;P26358;Q59FP7;B3KVA0;K7ENW7;I6L9H2 A0A024R7E3 1386 1399 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 no no 3 6.577E-15 160.56 4 2 0.42939 0.57174 51.765 6 Median 0.40104 0.54211 14.082 4 0 Median 0.91952 1.3809 5.867 2 0 Median 89986000 57981000 32005000 56348000 40977000 15372000 33638000 17004000 16633000 7741 176;1129 7913 28278;28279;28280;28281;28282;28283 42701;42702;42703;42704;42705;42706;42707;42708;42709;42710;42711;42712;42713;42714;42715;42716 42704 16 LPLISGFYK WVYSFSYELILQSTRLPLISGFYKLLSITV ILQSTRLPLISGFYKLLSITVRNAKKIKYF R L P Y K L 0 0 0 0 0 0 0 1 0 1 2 1 0 1 1 1 0 0 1 0 0 0 9 0 1036.5957 P78527;B4DL41 P78527 660 668 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.0055044 98.523 4 2 0.45539 0.57494 27.459 6 Median 0.45185 0.56301 2.2814 4 0 Median 0.65205 0.95662 5.4738 2 0 Median 68286000 46228000 22058000 55637000 38149000 17488000 12649000 8078700 4570600 7742 1427 7914 28284;28285;28286;28287;28288;28289 42717;42718;42719;42720;42721;42722;42723;42724;42725;42726;42727 42718 11 LPLLPHEVR LDQMEDLYEDFHIVKLPLLPHEVRGADKVN DFHIVKLPLLPHEVRGADKVNTFSALQGA_ K L P V R G 0 1 0 0 0 0 1 0 1 0 3 0 0 0 2 0 0 0 0 1 0 0 9 0 1072.6393 B4DEE5;A0A087WXS7;O43681 B4DEE5 298 306 ASNA1 ATPase ASNA1 yes no 3 0.0027318 98.582 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1058000 1058000 0 1058000 1058000 0 0 0 0 7743 359 7915 28290 42728 42728 1 LPLLSR PGRDSTEYFIVFEPRLPLLSRTLEPYILPF EYFIVFEPRLPLLSRTLEPYILPFMFYNDV R L P S R T 0 1 0 0 0 0 0 0 0 0 3 0 0 0 1 1 0 0 0 0 0 0 6 0 697.44866 A6NHR9;J3KTL8;B4DDM9;Q0VGE6;Q96LW0;B3KXL7;B1AL16;Q6TDP4;Q8IX21 A6NHR9 1597 1602 SMCHD1;KLHL17;FAM178A Structural maintenance of chromosomes flexible hinge domain-containing protein 1;Kelch-like protein 17;Protein FAM178A yes no 2 0.03421 114.6 1 0.87413 1.1595 NaN 1 Median 0.87413 1.1595 NaN 1 0 Median NaN NaN NaN 0 0 Median 3427600 1946900 1480600 3427600 1946900 1480600 0 0 0 7744 568 7916 28291 42729 42729 1 LPLQDVYK DCILPPTRPTDKPLRLPLQDVYKIGGIGTV PTDKPLRLPLQDVYKIGGIGTVPVGRVETG R L P Y K I 0 0 0 1 0 1 0 0 0 0 2 1 0 0 1 0 0 0 1 1 0 0 8 0 974.54368 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;P68104;A8K9C4;Q5VTE0;Q96RE1;A0A087WVQ9;Q53GE9;Q53GA1;Q53G85;B4DV42;Q8IUB0;Q504Z0;Q53HR1;B4DNE0;Q9NZS6;A0A087WV01;Q9H2I7;Q6P4C9;B4E2C5;Q96C29;Q8TBL1;Q6P082;Q96CD8;A9X7H1;Q05639;Q59GP5 Q6IPT9 248 255 EEF1A1;EEF1A1P5;EEF1A1L14;EEF1A2 Elongation factor 1-alpha;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 yes no 2 0.0034077 107.9 4 3 0.4004 0.52635 138.03 6 Median 0.39183 0.5122 2.7556 4 0 Median 4.6727 7.4767 0.216 2 0 Median 725380000 469180000 256200000 621480000 450840000 170640000 103900000 18343000 85559000 7745 1421 7917 28292;28293;28294;28295;28296;28297;28298 42730;42731;42732;42733;42734;42735;42736;42737;42738;42739;42740;42741;42742;42743;42744;42745;42746;42747;42748;42749;42750 42738 21 LPLQLDDAVRPEAEGEEEGR LHVQKIYVISLAEPRLPLQLDDAVRPEAEG DDAVRPEAEGEEEGRATVNQDTRLDNRVID R L P G R A 2 2 0 2 0 1 5 2 0 0 3 0 0 0 2 0 0 0 0 1 0 0 20 1 2222.0815 D3DP78;A0A140VJW5;P14868;C9J7S3;C9JLC1;Q53R85 D3DP78 119 138 DARS Aspartate--tRNA ligase, cytoplasmic yes no 3 4.4373E-07 74.147 4 0.39413 0.54481 8.8824 3 Median 0.39413 0.54481 8.8824 3 0 Median NaN NaN NaN 0 0 Median 37841000 27109000 10731000 37841000 27109000 10731000 0 0 0 7746 504 7918 28299;28300;28301;28302 42751;42752;42753;42754;42755;42756;42757 42756 7 LPLQLDDAVRPEAEGEEEGRATVNQDTR LHVQKIYVISLAEPRLPLQLDDAVRPEAEG EGEEEGRATVNQDTRLDNRVIDLRTSTSQA R L P T R L 3 3 1 3 0 2 5 2 0 0 3 0 0 0 2 0 2 0 0 2 0 0 28 2 3107.5119 D3DP78;A0A140VJW5;P14868;C9J7S3;C9JLC1;Q53R85 D3DP78 119 146 DARS Aspartate--tRNA ligase, cytoplasmic yes no 4 0.033007 12.062 1 0.4592 0.58035 NaN 1 Median 0.4592 0.58035 NaN 1 0 Median NaN NaN NaN 0 0 Median 11446000 7016900 4428700 11446000 7016900 4428700 0 0 0 7747 504 7919 28303 42758 42758 1 LPLTPVFEGLAFK AGLFDTAISLCQTFKLPLTPVFEGLAFKCI FKLPLTPVFEGLAFKCIKLQFGGEAAQAEA K L P F K C 1 0 0 0 0 0 1 1 0 0 3 1 0 2 2 0 1 0 0 1 0 0 13 0 1430.8173 G3V198;Q12769 G3V198 1202 1214 NUP160 Nuclear pore complex protein Nup160 yes no 2 8.4645E-07 139.43 5 0.46518 0.59987 16.993 3 Median 0.46518 0.59987 16.993 3 0 Median NaN NaN NaN 0 0 Median 15677000 11776000 3901200 15677000 11776000 3901200 0 0 0 7748 1077 7920 28304;28305;28306;28307;28308 42759;42760;42761;42762;42763;42764;42765;42766 42762 8 LPLVTPHTQCR GKKKKKTKGPDAASKLPLVTPHTQCRLKLL AASKLPLVTPHTQCRLKLLKLERIKDYLLM K L P C R L 0 1 0 0 1 1 0 0 1 0 2 0 0 0 2 0 2 0 0 1 0 0 11 0 1320.6972 Q53XL8;Q53HB3;P62191 Q53XL8 49 59 PSMC1 26S protease regulatory subunit 4 yes no 3 0.015552 37.995 1 0.38357 0.50993 NaN 1 Median 0.38357 0.50993 NaN 1 0 Median NaN NaN NaN 0 0 Median 16079000 11358000 4721600 16079000 11358000 4721600 0 0 0 7749 1398 7921 28309 42767 42767 1 LPNFGFVVFDDSEPVQK SYGNVVELRINSGGKLPNFGFVVFDDSEPV NFGFVVFDDSEPVQKVLSNRPIMFRGEVRL K L P Q K V 0 0 1 2 0 1 1 1 0 0 1 1 0 3 2 1 0 0 0 3 0 0 17 0 1936.9571 B7Z8K4;Q6FI03;Q5U0Q1;Q53HH4;Q13283;Q6ZP53 B7Z8K4 195 211 G3BP;DKFZp686L1159;G3BP1 Ras GTPase-activating protein-binding protein 1 yes no 2 5.8462E-07 73.881 1 0.71034 0.90422 NaN 1 Median 0.71034 0.90422 NaN 1 0 Median NaN NaN NaN 0 0 Median 6542700 3872000 2670700 6542700 3872000 2670700 0 0 0 7750 918 7922 28310 42768;42769 42768 2 LPNFGFVVFDDSEPVQR SVVELRINTKGVGGKLPNFGFVVFDDSEPV NFGFVVFDDSEPVQRILIAKPIMFRGEVRL K L P Q R I 0 1 1 2 0 1 1 1 0 0 1 0 0 3 2 1 0 0 0 3 0 0 17 0 1964.9632 A8K6V7;A0A024RDB2;A0A024RDE5;Q9UN86 A8K6V7 338 354 G3BP2 Ras GTPase-activating protein-binding protein 2 yes no 2 6.4021E-10 140.01 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1504000 1504000 0 1504000 1504000 0 0 0 0 7751 314 7923 28311 42770 42770 1 LPNFLSVEPR PKVNTDLGNDLYFVKLPNFLSVEPRPFDPQ LYFVKLPNFLSVEPRPFDPQYYEDEFEDEE K L P P R P 0 1 1 0 0 0 1 0 0 0 2 0 0 1 2 1 0 0 0 1 0 0 10 0 1170.6397 B4DNM0;Q8WVC0 B4DNM0 356 365 LEO1 RNA polymerase-associated protein LEO1 yes no 2 0.0015933 111.46 2 0.66456 0.9155 13.17 2 Median 0.66456 0.9155 13.17 2 0 Median NaN NaN NaN 0 0 Median 16072000 10095000 5976700 16072000 10095000 5976700 0 0 0 7752 838 7924 28312;28313 42771;42772 42771 2 LPNLLGR TMVGNNEGSMVLGLKLPNLLGRAEKVTFQF GSMVLGLKLPNLLGRAEKVTFQFSYGTKET K L P G R A 0 1 1 0 0 0 0 1 0 0 3 0 0 0 1 0 0 0 0 0 0 0 7 0 781.48102 Q9Y512 Q9Y512 149 155 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 2 0.011152 116 3 1 0.43755 0.60393 13.887 2 Median 0.43755 0.60393 13.887 2 0 Median NaN NaN NaN 0 0 Median 19231000 12209000 7022100 17228000 12209000 5019000 2003100 0 2003100 7753 1827 7925 28314;28315;28316;28317 42773;42774;42775;42776 42773 4 LPNNSSRPSTPTINVLESK IKTPPKRPGGRRRGRLPNNSSRPSTPTINV SSRPSTPTINVLESKDTDSDREAGTETGGE R L P S K D 0 1 3 0 0 0 1 0 0 1 2 1 0 0 3 4 2 0 0 1 0 0 19 1 2053.0804 A0A090N8E9;Q15910;S4S3R8;Q75MP9;Q75MQ0;F2YMM1;B7Z8K5 A0A090N8E9 363 381 EZH2 Histone-lysine N-methyltransferase EZH2 yes no 3 0.017629 59.252 2 0.68452 0.89026 NaN 1 Median 0.68452 0.89026 NaN 1 0 Median NaN NaN NaN 0 0 Median 13116000 7184500 5931300 13116000 7184500 5931300 0 0 0 7754 381 7926 28318;28319 42777;42778 42778 2 LPNYDAR LINGAEGIGTGWACKLPNYDAREIVNNVRR IGTGWACKLPNYDAREIVNNVRRMLDGLDP K L P A R E 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 7 0 847.41882 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80;Q6W6M6 Q71UH4 857 863 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.037769 55.902 1 0.58009 0.83151 NaN 1 Median NaN NaN NaN 0 0 Median 0.58009 0.83151 NaN 1 0 Median 13023000 8650700 4372600 0 0 0 13023000 8650700 4372600 7755 1437 7927 28320 42779 42779 1 LPPLVAGK RLSVLLCANADGSEKLPPLVAGKSAKPRAG NADGSEKLPPLVAGKSAKPRAGQAGLPCDY K L P G K S 1 0 0 0 0 0 0 1 0 0 2 1 0 0 2 0 0 0 0 1 0 0 8 0 793.50617 P07199 P07199 239 246 CENPB Major centromere autoantigen B yes yes 2 0.036951 47.916 1 0.89079 1.3614 NaN 1 Median NaN NaN NaN 0 0 Median 0.89079 1.3614 NaN 1 0 Median 25884000 13089000 12795000 0 0 0 25884000 13089000 12795000 7756 1239 7928 28321 42780 42780 1 LPPNTNDEVDEDPTGNK TVAGADKFGNICVVRLPPNTNDEVDEDPTG PNTNDEVDEDPTGNKALWDRGLLNGASQKA R L P N K A 0 0 3 3 0 0 2 1 0 0 1 1 0 0 3 0 2 0 0 1 0 0 17 0 1853.8279 A8K6V3;Q15393;B3KQH1;B3KM77 A8K6V3 1058 1074 SF3B3 Splicing factor 3B subunit 3 yes no 2 0.00070503 101.75 3 1 1.2783 1.7528 NaN 1 Median NaN NaN NaN 0 0 Median 1.2783 1.7528 NaN 1 0 Median 6138700 4176500 1962200 2210600 2210600 0 3928100 1965900 1962200 7757 628 7929 28322;28323;28324;28325 42781;42782;42783;42784 42783 4 LPPPLSAPVAGLAALK VLKTARKDLGAPASKLPPPLSAPVAGLAAL PPPLSAPVAGLAALKAHAKEACGGPSAMAT K L P L K A 4 0 0 0 0 0 0 1 0 0 4 1 0 0 4 1 0 0 0 1 0 0 16 0 1513.9232 Q14781 Q14781 200 215 CBX2 Chromobox protein homolog 2 yes yes 2 0.0083544 68.355 1 1.1545 1.5385 NaN 1 Median 1.1545 1.5385 NaN 1 0 Median NaN NaN NaN 0 0 Median 2751300 1321600 1429700 2751300 1321600 1429700 0 0 0 7758 1496 7930 28326 42785 42785 1 LPPPPDIKK NNWQPERQVPFNEVRLPPPPDIKKEISEGD PFNEVRLPPPPDIKKEISEGDEVEVYSRAN R L P K K E 0 0 0 1 0 0 0 0 0 1 1 2 0 0 4 0 0 0 0 0 0 0 9 1 1003.6066 A0A0F7KYT8;A0A0F7L0Q8;B4DXZ6;A0A0F7L1S3;P51114;C9JAJ4 A0A0F7KYT8 49 57 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 2 0.034815 53.968 1 0.75006 0.94402 NaN 1 Median 0.75006 0.94402 NaN 1 0 Median NaN NaN NaN 0 0 Median 7233500 3349300 3884200 7233500 3349300 3884200 0 0 0 7759 438 7931 28327 42786 42786 1 LPPYLIFCIK KTYKENFLKRFQLTKLPPYLIFCIKRFTKN FQLTKLPPYLIFCIKRFTKNNFFVEKNPTI K L P I K R 0 0 0 0 1 0 0 0 0 2 2 1 0 1 2 0 0 0 1 0 0 0 10 0 1262.7097 B9A018;Q53GS9;B7Z7L9;A0A087X1B2;B3KPG7;B3KMG1 B9A018 446 455 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 2 0.0042189 72.485 2 0.65421 0.83621 4.0839 2 Median 0.65421 0.83621 4.0839 2 0 Median NaN NaN NaN 0 0 Median 8762900 4975000 3787800 8762900 4975000 3787800 0 0 0 7760 926 7932 28328;28329 42787;42788;42789;42790 42790 4 LPPYSAGDGAELSTPGGK ELLSSDMKKDFIMHRLPPYSAGDGAELSTP YSAGDGAELSTPGGKLPRLDSVVRLQFKDH R L P G K L 2 0 0 1 0 0 1 4 0 0 2 1 0 0 3 2 1 0 1 0 0 0 18 0 1715.8366 Q8IUF8 Q8IUF8 339 356 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA yes yes 2 0.0010966 81.185 1 0.65924 0.81544 NaN 1 Median 0.65924 0.81544 NaN 1 0 Median NaN NaN NaN 0 0 Median 1287600 697070 590550 1287600 697070 590550 0 0 0 7761 1623 7933 28330 42791;42792 42792 2 LPQLPITNFSR KQTPKQRLLGWIQNKLPQLPITNFSRDWQS IQNKLPQLPITNFSRDWQSGRALGALVDSC K L P S R D 0 1 1 0 0 1 0 0 0 1 2 0 0 1 2 1 1 0 0 0 0 0 11 0 1284.719 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98 P21333 180 190 FLNA Filamin-A yes no 2 0.0028301 91.265 4 0.86529 1.1929 1.074 2 Median 0.86529 1.1929 1.074 2 0 Median NaN NaN NaN 0 0 Median 26435000 18828000 7606800 26435000 18828000 7606800 0 0 0 7762 1287 7934 28331;28332;28333;28334 42793;42794;42795;42796 42796 4 LPQTEQELK TLKERKAAIRDIEGKLPQTEQELKEKEKEL RDIEGKLPQTEQELKEKEKELQKLTQEETN K L P L K E 0 0 0 0 0 2 2 0 0 0 2 1 0 0 1 0 1 0 0 0 0 0 9 0 1084.5764 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 548 556 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.00029806 104.2 4 2 0.64891 0.99079 12.181 5 Linear 0.66569 0.85548 4.7116 3 0 Plateau 0.64341 1.0186 0.6181 2 0 Median 322100000 200410000 121690000 126330000 80932000 45402000 195760000 119470000 76290000 7763 1760 7935 28335;28336;28337;28338;28339;28340 42797;42798;42799;42800;42801;42802;42803;42804;42805;42806 42800 10 LPQVTR AVREGSPANWKRKEKLPQVTRSWHNYTCNC PANWKRKEKLPQVTRSWHNYTCNCVIQDFQ K L P T R S 0 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 1 0 0 6 0 712.42317 Q6FI97;Q53FS0;O96019;D3DNS0 Q6FI97 243 248 BAF53A;ACTL6A Actin-like protein 6A yes no 2 0.035424 116 1 0.67962 0.90636 NaN 1 Median 0.67962 0.90636 NaN 1 0 Median NaN NaN NaN 0 0 Median 22216000 13350000 8865400 22216000 13350000 8865400 0 0 0 7764 1227 7936 28341 42807;42808 42808 2 LPRPLTSSASAIR LARSTRPQAWVPREKLPRPLTSSASAIRKL EKLPRPLTSSASAIRKLMRKAELMGISTDI K L P I R K 2 2 0 0 0 0 0 0 0 1 2 0 0 0 2 3 1 0 0 0 0 0 13 1 1367.7885 A0A0U1RRH6;O94880;B4DG57 A0A0U1RRH6 565 577 PHF14 PHD finger protein 14 yes no 3 0.010826 30.483 1 0.63302 0.83946 NaN 1 Median 0.63302 0.83946 NaN 1 0 Median NaN NaN NaN 0 0 Median 7632700 4676300 2956400 7632700 4676300 2956400 0 0 0 7765 487 7937 28342 42809 42809 1 LPSAQTPNGTDYVASGK QTTSQSSKQPPPSIRLPSAQTPNGTDYVAS SAQTPNGTDYVASGKSIQTPQSHGTLTAEL R L P G K S 2 0 1 1 0 1 0 2 0 0 1 1 0 0 2 2 2 0 1 1 0 0 17 0 1704.8319 E7EPN9;Q9Y520;H7C5N8 E7EPN9 1962 1978 PRRC2C Protein PRRC2C yes no 2 0.0079455 30.438 1 1.2323 1.5749 NaN 1 Median 1.2323 1.5749 NaN 1 0 Median NaN NaN NaN 0 0 Median 3051200 1517900 1533400 3051200 1517900 1533400 0 0 0 7766 1010 7938 28343 42810 42810 1 LPSFELLHK CAIGLWTDISARILKLPSFELLHKEMLGGE SARILKLPSFELLHKEMLGGEIIPRSILMT K L P H K E 0 0 0 0 0 0 1 0 1 0 3 1 0 1 1 1 0 0 0 0 0 0 9 0 1082.6124 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 571 579 DDB1 DNA damage-binding protein 1 yes no 2;3 0.0048255 82.279 5 1 0.79882 1.0435 6.27 6 Median 0.81987 1.0241 4.9745 5 0 Median 0.75482 1.1415 NaN 1 0 Median 151170000 86346000 64824000 132720000 75136000 57589000 18445000 11210000 7234500 7767 1520 7939 28344;28345;28346;28347;28348;28349 42811;42812;42813;42814;42815;42816;42817;42818 42818 8 LPSGAYEGGALIK NHPYLFPVAAMESPKLPSGAYEGGALIKSS PKLPSGAYEGGALIKSSGKLMLLQKMLRKL K L P I K S 2 0 0 0 0 0 1 3 0 1 2 1 0 0 1 1 0 0 1 0 0 0 13 0 1274.6871 Q12873;B4DLC6 Q12873 1045 1057 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 2 0.0030847 80.24 1 1 0.82511 1.0449 NaN 1 Median 0.82511 1.0449 NaN 1 0 Median NaN NaN NaN 0 0 Median 3995000 2105800 1889200 3995000 2105800 1889200 0 0 0 7768 1458 7940 28350;28351 42819;42820;42821 42821 3 LPSGSGAASPTGSAVDIR SNVDVETQSGKTVIRLPSGSGAASPTGSAV GSGAASPTGSAVDIRAGAISASGPELQGAG R L P I R A 3 1 0 1 0 0 0 3 0 1 1 0 0 0 2 4 1 0 0 1 0 0 18 0 1641.8322 Q09666;B4DTV0 Q09666 208 225 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 1.1331E-34 180.3 3 2 3.0122 4.3515 14.756 2 Median NaN NaN NaN 0 0 Median 3.0122 4.3515 14.756 2 0 Median 27564000 15690000 11874000 11176000 11176000 0 16388000 4514000 11874000 7769 1453 7941 28352;28353;28354;28355;28356 42822;42823;42824;42825;42826;42827 42823 6 LPSIPLVPVSAQK TRALMDSLGPEWRLKLPSIPLVPVSAQKRW LKLPSIPLVPVSAQKRWNSLPSENHKEMAK K L P Q K R 1 0 0 0 0 1 0 0 0 1 2 1 0 0 3 2 0 0 0 2 0 0 13 0 1347.8126 Q15785;B4DXU3 Q15785 144 156 TOMM34 Mitochondrial import receptor subunit TOM34 yes no 2 0.0046721 45.368 1 0.45545 0.57769 NaN 1 Median 0.45545 0.57769 NaN 1 0 Median NaN NaN NaN 0 0 Median 6392300 4226600 2165700 6392300 4226600 2165700 0 0 0 7770 1516 7942 28357 42828 42828 1 LPSLGAGFSQGLK LSPQLQQLACECYSRLPSLGAGFSQGLKHT SRLPSLGAGFSQGLKHTESWEQELHSLLAS R L P L K H 1 0 0 0 0 1 0 3 0 0 3 1 0 1 1 2 0 0 0 0 0 0 13 0 1273.703 O15451;A8K548;C9JFV4;B4DR36;Q8IZL8;E7EV54;B4DEX7 O15451 212 224 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes no 2 0.011771 72.096 1 0.72372 0.89197 NaN 1 Median 0.72372 0.89197 NaN 1 0 Median NaN NaN NaN 0 0 Median 1362700 791520 571180 1362700 791520 571180 0 0 0 7771 613 7943 28358 42829 42829 1 LPSNLPQLQNLIK ______________________________ NKLPSNLPQLQNLIKRDPPAYIEEFLQQYN K L P I K R 0 0 2 0 0 2 0 0 0 1 4 1 0 0 2 1 0 0 0 0 0 0 13 0 1476.8664 E7EW05;B4DT66;Q9NVU7;F8W8T7;D6RC74 E7EW05 9 21 SDAD1 Protein SDA1 homolog yes no 2 5.3674E-05 107.11 3 1.0213 1.3174 20.569 3 Median 1.0213 1.3174 20.569 3 0 Median NaN NaN NaN 0 0 Median 15638000 7198100 8439500 15638000 7198100 8439500 0 0 0 7772 856 7944 28359;28360;28361 42830;42831;42832;42833 42833 4 LPSNTLDR GLQLIIRNFWSHETRLPSNTLDRLLALNSL FWSHETRLPSNTLDRLLALNSLYSPKIEVH R L P D R L 0 1 1 1 0 0 0 0 0 0 2 0 0 0 1 1 1 0 0 0 0 0 8 0 914.48214 P78527 P78527 2531 2538 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0057916 77.923 1 2 0.76065 1.1806 2.9536 2 Median NaN NaN NaN 0 0 Median 0.76065 1.1806 2.9536 2 0 Median 63116000 42859000 20257000 17110000 17110000 0 46005000 25749000 20257000 7773 1427 7945 28362;28363;28364 42834;42835;42836 42834 3 LPSRPGAQGVEPQNLR VQPSPAHVGQQGLSKLPSRPGAQGVEPQNL PSRPGAQGVEPQNLRTLQGHSVIRSATNTT K L P L R T 1 2 1 0 0 2 1 2 0 0 2 0 0 0 3 1 0 0 0 1 0 0 16 1 1717.9224 A0A0U1RRM1;Q8WXI9;B3KSZ4 A0A0U1RRM1 225 240 GATAD2B Transcriptional repressor p66-beta yes no 3 1.8386E-09 87.669 4 2 0.72872 0.99472 37.705 6 Median 0.61239 0.8261 18.4 4 0 Median 1.1098 1.6807 8.2721 2 0 Median 152330000 86094000 66240000 107820000 66043000 41781000 44511000 20051000 24459000 7774 488 7946 28365;28366;28367;28368;28369;28370 42837;42838;42839;42840;42841;42842 42839 6 LPTFGAPEQLVDLK KKSKKPPPVPALPSKLPTFGAPEQLVDLKQ KLPTFGAPEQLVDLKQAGLEAAAKATSSHP K L P L K Q 1 0 0 1 0 1 1 1 0 0 3 1 0 1 2 0 1 0 0 1 0 0 14 0 1526.8344 Q14258 Q14258 403 416 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 no no 2 2.0935E-19 166.62 3 0.58 0.7353 12.351 2 Median 0.58 0.7353 12.351 2 0 Median NaN NaN NaN 0 0 Median 22865000 15051000 7814000 22865000 15051000 7814000 0 0 0 7775 1485 7947 28371;28372;28373 42843;42844;42845;42846 42843 4 LPTGAQQHSILLLLNR LNKNGLITMQSHVIRLPTGAQQHSILLLLN PTGAQQHSILLLLNRFHVDRRSKYDILMEK R L P N R F 1 1 1 0 0 2 0 1 1 1 5 0 0 0 1 1 1 0 0 0 0 0 16 0 1773.0261 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 231 246 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 3 8.8643E-08 107.69 3 1 0.58025 0.78407 40.33 4 Median 0.66281 0.88951 16.476 3 0 Plateau 1.1176 1.5777 NaN 1 0 Median 37317000 22910000 14407000 29598000 18928000 10669000 7718800 3981600 3737200 7776 1457 7948 28374;28375;28376;28377 42847;42848;42849;42850;42851;42852;42853;42854;42855 42854 9 LPTIDPNTR QSLEYLEQVRQHLSRLPTIDPNTRTLLLCG RQHLSRLPTIDPNTRTLLLCGYPNVGKSSF R L P T R T 0 1 1 1 0 0 0 0 0 1 1 0 0 0 2 0 2 0 0 0 0 0 9 0 1025.5506 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;B4DHR2;O60747;Q5T3R7 Q53GS0 161 169 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.00014623 94.114 5 2 0.68987 0.97923 5.6772 5 Median 0.70512 0.97923 7.6148 3 0 Median 0.6105 0.97233 2.8028 2 0 Median 230050000 120510000 109540000 152730000 73047000 79679000 77319000 47463000 29857000 7777 975 7949 28378;28379;28380;28381;28382;28383;28384 42856;42857;42858;42859;42860;42861;42862;42863;42864 42859 9 LPTSGADPLCR VGVEEGLVNVGTGQKLPTSGADPLCRNPTN TGQKLPTSGADPLCRNPTNRSLKGKLMNSK K L P C R N 1 1 0 1 1 0 0 1 0 0 2 0 0 0 2 1 1 0 0 0 0 0 11 0 1185.5812 Q7Z5J4 Q7Z5J4 1391 1401 RAI1 Retinoic acid-induced protein 1 yes yes 2 2.6894E-08 127.4 2 0.60578 0.83344 NaN 1 Median 0.60578 0.83344 NaN 1 0 Median NaN NaN NaN 0 0 Median 5896100 4019200 1876800 5896100 4019200 1876800 0 0 0 7778 1617 7950 28385;28386 42865;42866 42866 2 LPTTAQQEDPEK QPDLAGLEALRQRERLPTTAQQEDPEKIQV RERLPTTAQQEDPEKIQVQLCFKTCSPESQ R L P E K I 1 0 0 1 0 2 2 0 0 0 1 1 0 0 2 0 2 0 0 0 0 0 12 0 1355.6569 Q4VC44;I3L188;J3KNW1;B3KRZ0;B3KPY2;B3KP60;I3L1A7;I3L287 Q4VC44 674 685 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 2 0.00042307 74.76 1 2 0.55178 0.773 8.0307 3 Median 0.63502 0.773 NaN 1 0 Median 0.50428 0.75235 11.14 2 0 Median 18917000 12199000 6718800 3394600 1852600 1542000 15523000 10346000 5176800 7779 1536 7951 28387;28388;28389 42867;42868;42869;42870 42870 4 LPVATIFTTHATLLGR EWLAGVGLCLCRARRLPVATIFTTHATLLG PVATIFTTHATLLGRYLCAGAVDFYNNLEN R L P G R Y 2 1 0 0 0 0 0 1 1 1 3 0 0 1 1 0 4 0 0 1 0 0 16 0 1709.9828 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6;B7Z8P0 P13807 196 211 GYS1 Glycogen [starch] synthase, muscle yes no 3 2.4699E-05 91.076 4 1 0.71162 0.96098 5.8545 4 Median 0.71162 0.96098 5.8545 4 0 Median NaN NaN NaN 0 0 Median 29738000 17287000 12451000 29738000 17287000 12451000 0 0 0 7780 1265 7952 28390;28391;28392;28393;28394 42871;42872;42873;42874;42875;42876;42877;42878 42876 8 LPVDFSNIPTYLLK KNNWTGEFSARFLLKLPVDFSNIPTYLLKD KLPVDFSNIPTYLLKDVNEDPGEDVALLSV K L P L K D 0 0 1 1 0 0 0 0 0 1 3 1 0 1 2 1 1 0 1 1 0 0 14 0 1618.897 A2NFR5;F8W733;Q6ZWH1;Q9NXR7 A2NFR5 39 52 Hin-3;BRE BRCA1-A complex subunit BRE yes no 2 2.5456E-22 145.31 4 0.70568 0.90039 9.5294 4 Median 0.70568 0.90039 9.5294 4 0 Median NaN NaN NaN 0 0 Median 13539000 7187700 6351300 13539000 7187700 6351300 0 0 0 7781 538 7953 28395;28396;28397;28398 42879;42880;42881;42882;42883 42881 5 LPVDLAEELGHR HRAGARLDVRDAWGRLPVDLAEELGHRDVA WGRLPVDLAEELGHRDVARHPRLKEPERL_ R L P H R D 1 1 0 1 0 0 2 1 1 0 3 0 0 0 1 0 0 0 0 1 0 0 12 0 1347.7147 J3QRG6;K7PML8;P42771;A7LNE7;K7ES20;L8E941;K7ENC6 J3QRG6 113 124 CDKN2A Cyclin-dependent kinase inhibitor 2A no no 3 0.00081785 85.522 3 0.36663 0.5008 1.8662 2 Median 0.36663 0.5008 1.8662 2 0 Median NaN NaN NaN 0 0 Median 15919000 13216000 2702800 15919000 13216000 2702800 0 0 0 7782 1146 7954 28399;28400;28401 42884;42885;42886;42887 42885 4 LPVITCYADAK KKLMMTLKKTLIESKLPVITCYADAKPGLQ IESKLPVITCYADAKPGLQTHGFIIRVKDY K L P A K P 2 0 0 1 1 0 0 0 0 1 1 1 0 0 1 0 1 0 1 1 0 0 11 0 1249.6377 Q14690;B4DH82;B4DES7 Q14690 530 540 PDCD11 Protein RRP5 homolog yes no 2 0.030097 68.893 2 1.2611 1.6144 11.085 2 Median 1.2611 1.6144 11.085 2 0 Median NaN NaN NaN 0 0 Median 13265000 6602000 6662800 13265000 6602000 6662800 0 0 0 7783 1494 7955 28402;28403 42888;42889;42890 42888 3 LPVLAGCLK GELKTQMTSAVREPKLPVLAGCLKGLSSLL AVREPKLPVLAGCLKGLSSLLCNFTKSMEE K L P L K G 1 0 0 0 1 0 0 1 0 0 3 1 0 0 1 0 0 0 0 1 0 0 9 0 969.56812 P78527;B4DL41 P78527 217 225 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.011677 60.972 2 0.43374 0.5516 0.060271 2 Median 0.43374 0.5516 0.060271 2 0 Median NaN NaN NaN 0 0 Median 26579000 15846000 10734000 26579000 15846000 10734000 0 0 0 7784 1427 7956 28404;28405 42891;42892 42892 2 LPVVLPQSTLNLAKPDFGAEAK SPYSAPWKPTWPAYRLPVVLPQSTLNLAKP STLNLAKPDFGAEAKLEVSSSCGPQCHKGT R L P A K L 3 0 1 1 0 1 1 1 0 0 4 2 0 1 3 1 1 0 0 2 0 0 22 1 2307.2838 B3KQQ9;O95084;E9PRR2 B3KQQ9 37 58 PRSS23 Serine protease 23 yes no 3 6.4708E-12 85.397 4 0.5688 0.69282 20.466 4 Median 0.5688 0.69282 20.466 4 0 Median NaN NaN NaN 0 0 Median 14868000 9229800 5638400 14868000 9229800 5638400 0 0 0 7785 771 7957 28406;28407;28408;28409 42893;42894;42895;42896;42897;42898 42896 6 LQAAATLTEVANGIESLGVKPDLPPPPSK TFVAPQPVVVASPAKLQAAATLTEVANGIE ESLGVKPDLPPPPSKAPMKKENQWFDVGVI K L Q S K A 4 0 1 1 0 1 2 2 0 1 4 2 0 0 5 2 2 0 0 2 0 0 29 1 2912.5859 A6NEM2;P51610;H7C1C4 A6NEM2 1820 1848 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 3 0.00016207 35.875 2 0.68197 0.82785 7.8143 2 Median 0.68197 0.82785 7.8143 2 0 Median NaN NaN NaN 0 0 Median 13298000 7049900 6247800 13298000 7049900 6247800 0 0 0 7786 564 7958 28410;28411 42899;42900;42901 42901 3 LQAEEVAQQK LERWQLKANEALRLRLQAEEVAQQKSLAQA ALRLRLQAEEVAQQKSLAQAEAEKQKEEAE R L Q Q K S 2 0 0 0 0 3 2 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1142.5932 Q15149 Q15149 1783 1792 PLEC Plectin yes yes 2 4.0681E-11 135.83 2 0.94626 1.2133 12.692 2 Median 0.94626 1.2133 12.692 2 0 Median NaN NaN NaN 0 0 Median 21008000 10510000 10498000 21008000 10510000 10498000 0 0 0 7787 1507 7959 28412;28413 42902;42903 42903 2 LQAEIDNIK NTRNEISEMNRAIQRLQAEIDNIKNQRAKL NRAIQRLQAEIDNIKNQRAKLEAAIAEAEE R L Q I K N 1 0 1 1 0 1 1 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 9 0 1042.5659 CON__P08729;Q96GE1;Q3KNV1;Q3B834;CON__Q3KNV1;P08729;B3KY79 CON__Q3KNV1 318 326 KRT7 Keratin, type II cytoskeletal 7 no no 2 0.0018487 104.06 3 2 0.30838 0.39326 96.948 5 Median 0.2978 0.37402 5.7562 3 0 Median 1.435 2.1801 5.9246 2 0 Median 182920000 125590000 57337000 141140000 108170000 32966000 41785000 17414000 24371000 + 7788 968;957 7960 28414;28415;28416;28417;28418 42904;42905;42906;42907;42908;42909;42910 42910 7 LQAEISQAAR EKIAQRLRTKAQLEKLQAEISQAARKTGIH AQLEKLQAEISQAARKTGIHTSTRLALIAP K L Q A R K 3 1 0 0 0 2 1 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 10 0 1085.5829 B4DLS8;Q53GV6;B2R791;O43395 B4DLS8 337 346 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes no 2 0.036457 48.794 1 0.57594 0.79815 NaN 1 Median 0.57594 0.79815 NaN 1 0 Median NaN NaN NaN 0 0 Median 4062400 1780000 2282400 4062400 1780000 2282400 0 0 0 7789 703 7961 28419 42911 42911 1 LQAELEGIK ______________________________ ______________________________ K L Q I K R 1 0 0 0 0 1 2 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 9 0 999.56006 L0R512 L0R512 5 13 NCAM2 yes yes 2 2.2892E-09 154.12 6 2 0.24089 0.31545 124.82 6 Median 0.22395 0.29581 9.8911 4 0 Median 2.058 3.2661 3.4197 2 0 Median 1049600000 767100000 282500000 881810000 709650000 172160000 167790000 57455000 110340000 7790 1156 7962 28420;28421;28422;28423;28424;28425;28426;28427 42912;42913;42914;42915;42916;42917;42918;42919;42920;42921;42922;42923 42916 12 LQAETEELEEEK AAAKCRNRRRELTEKLQAETEELEEEKSGL TEKLQAETEELEEEKSGLQKEIAELQKEKE K L Q E K S 1 0 0 0 0 1 6 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 12 0 1446.6726 C9JCN8;P15408 C9JCN8 113 124 FOSL2 Fos-related antigen 2 yes no 2 0.0017964 123.62 3 1.0773 1.3788 11.082 3 Median 1.0773 1.3788 11.082 3 0 Median NaN NaN NaN 0 0 Median 19208000 10269000 8939100 19208000 10269000 8939100 0 0 0 7791 936 7963 28428;28429;28430 42924;42925;42926 42925 2 LQAEVLECVSLVELTSLK ATGGTMNAACELLGRLQAEVLECVSLVELT EVLECVSLVELTSLKGREKLAPVPFFSLLQ R L Q L K G 1 0 0 0 1 1 3 0 0 0 5 1 0 0 0 2 1 0 0 3 0 0 18 0 2030.0969 H3BQZ9;P07741 H3BQZ9 119 136 APRT Adenine phosphoribosyltransferase yes no 2 2.7872E-07 127.03 3 0.46516 0.59846 NaN 1 Median 0.46516 0.59846 NaN 1 0 Median NaN NaN NaN 0 0 Median 6192900 5666200 526610 6192900 5666200 526610 0 0 0 7792 1106 7964 28431;28432;28433 42927;42928;42929 42927 3 LQAFFHIQAQK EYNPRNTSEAKAGTRLQAFFHIQAQKLGLH AGTRLQAFFHIQAQKLGLHVTPSNVDQVST R L Q Q K L 2 0 0 0 0 3 0 0 1 1 1 1 0 2 0 0 0 0 0 0 0 0 11 0 1329.7194 D3DS96;Q9NRL2 D3DS96 1521 1531 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A no no 3 0.00079381 48.741 1 1 0.55417 0.75784 28.514 2 Median 0.48929 0.61946 NaN 1 0 Median 0.62765 0.92714 NaN 1 0 Median 14691000 9464900 5226000 7996400 5310000 2686400 6694500 4154900 2539600 7793 979 7965 28434;28435 42930;42931 42931 2 LQAFGLNPK GPTVMLGGCEFSRQRLQAFGLNPKRLHFRQ EFSRQRLQAFGLNPKRLHFRQLGRQRRKQQ R L Q P K R 1 0 1 0 0 1 0 1 0 0 2 1 0 1 1 0 0 0 0 0 0 0 9 0 986.55492 Q8N9T8;A0A024R7C4;B4DUT2 Q8N9T8 674 682 KRI1;FLJ12949 Protein KRI1 homolog yes no 2 0.0059901 97.798 4 0.69961 0.88751 20.083 4 Median 0.69961 0.88751 20.083 4 0 Median NaN NaN NaN 0 0 Median 29332000 16507000 12825000 29332000 16507000 12825000 0 0 0 7794 1645 7966 28436;28437;28438;28439 42932;42933;42934;42935;42936 42933 5 LQAITASSANLR QRPTKELHGTSIVPKLQAITASSANLRHSP VPKLQAITASSANLRHSPRVLVQHCPARTP K L Q L R H 3 1 1 0 0 1 0 0 0 1 2 0 0 0 0 2 1 0 0 0 0 0 12 0 1243.6884 I3VM54;I3VM53;Q9Y2K7 I3VM54 802 813 KDM2A Lysine-specific demethylase 2A yes no 2 0.00029838 73.067 1 1 0.47714 0.63792 NaN 1 Median 0.47714 0.63792 NaN 1 0 Median NaN NaN NaN 0 0 Median 6038800 4331500 1707300 6038800 4331500 1707300 0 0 0 7795 1128 7967 28440;28441 42937;42938;42939 42939 3 LQALANEQAAAAHELEK DIQNMNFLLKAEVQKLQALANEQAAAAHEL ALANEQAAAAHELEKMQQSVYVKDDKIRLL K L Q E K M 6 0 1 0 0 2 3 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 17 0 1805.9272 A0A024R663;Q86UP2 A0A024R663 654 670 KTN1 Kinectin yes no 3 1.0983E-05 85.576 2 2 0.36618 0.54162 9.4446 3 Median 0.36618 0.46676 NaN 1 0 Median 0.37026 0.54883 1.87 2 0 Median 24304000 16875000 7429200 6741300 4752700 1988600 17563000 12122000 5440500 7796 155 7968 28442;28443;28444;28445 42940;42941;42942;42943 42942 4 LQANISTGVSK KGPLSQEALMELFPKLQANISTGVSKIRLL LFPKLQANISTGVSKIRLLTIRILNHFDVQ K L Q S K I 1 0 1 0 0 1 0 1 0 1 1 1 0 0 0 2 1 0 0 1 0 0 11 0 1116.6139 O75691 O75691 634 644 UTP20 Small subunit processome component 20 homolog yes yes 2 0.0036516 90.149 4 1.0876 1.3866 2.3394 2 Median 1.0876 1.3866 2.3394 2 0 Median NaN NaN NaN 0 0 Median 30445000 22715000 7729800 30445000 22715000 7729800 0 0 0 7797 1207 7969 28446;28447;28448;28449 42944;42945;42946;42947 42946 4 LQAQLNELQAQLSQK AVQAQGGESQQEAQRLQAQLNELQAQLSQK LQAQLNELQAQLSQKEQAAEHYKLQMEKAK R L Q Q K E 2 0 1 0 0 5 1 0 0 0 4 1 0 0 0 1 0 0 0 0 0 0 15 0 1710.9264 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;K4DIE0;Q4LE64;Q14980 Q4LE64 1575 1589 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 6.9601E-123 265.53 4 2 0.66928 0.83429 26.477 6 Median 0.70186 0.86853 4.5532 4 0 Median 0.32581 0.52092 4.1787 2 0 Median 237070000 161260000 75807000 113580000 64240000 49339000 123490000 97021000 26468000 7798 148;1499 7970 28450;28451;28452;28453;28454;28455 42948;42949;42950;42951;42952;42953;42954;42955;42956;42957;42958;42959;42960 42953 13 LQAVEVVITHLAPGTK EVTYKMCSIPPKNEKLQAVEVVITHLAPGT QAVEVVITHLAPGTKHETWSGHVISS____ K L Q T K H 2 0 0 0 0 1 1 1 1 1 2 1 0 0 1 0 2 0 0 3 0 0 16 0 1674.9669 Q9Y2V2 Q9Y2V2 121 136 CARHSP1 Calcium-regulated heat stable protein 1 yes yes 3 0.001522 69.979 4 0.26546 0.32661 2.812 3 Median 0.26546 0.32661 2.812 3 0 Median NaN NaN NaN 0 0 Median 39744000 32845000 6898700 39744000 32845000 6898700 0 0 0 7799 1808 7971 28456;28457;28458;28459 42961;42962;42963;42964;42965;42966 42966 6 LQAVTDDHIR TSAFLLWDPTKVPPRLQAVTDDHIRMHKVL KVPPRLQAVTDDHIRMHKVLRESGLKYVAV R L Q I R M 1 1 0 2 0 1 0 0 1 1 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1166.6044 V9HWI1;P30043 V9HWI1 125 134 HEL-S-10;BLVRB Flavin reductase (NADPH) yes no 2;3 8.6241E-06 83.948 2 0.26013 0.34887 NaN 1 Median 0.26013 0.34887 NaN 1 0 Median NaN NaN NaN 0 0 Median 28456000 22018000 6437800 28456000 22018000 6437800 0 0 0 7800 1305 7972 28460;28461 42967;42968 42968 2 LQCPQCVFGTNCPK IRELKELQDEGRSARLQCPQCVFGTNCPKT RLQCPQCVFGTNCPKTFVQHAKTHEKDKRY R L Q P K T 0 0 1 0 3 2 0 1 0 0 1 1 0 1 2 0 1 0 0 1 0 0 14 0 1707.7531 A7E234;Q9H582;Q569I6;Q9NZF0;A0A087WZL9 A7E234 495 508 ZNF644 Zinc finger protein 644 yes no 2 0.0063296 97.452 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1580500 1580500 0 1580500 1580500 0 0 0 0 7801 573 7973 28462;28463;28464 42969;42970;42971 42971 3 LQDAFSSIGQSCHLDLPQIAVVGGQSAGK MGNRGMEELIPLVNKLQDAFSSIGQSCHLD DLPQIAVVGGQSAGKSSVLENFVGRDFLPR K L Q G K S 3 0 0 2 1 4 0 4 1 2 3 1 0 1 1 4 0 0 0 2 0 0 29 0 2982.4869 P50570 P50570 16 44 DNM2 Dynamin-2 yes yes 3 7.1349E-13 98.98 3 0.24259 0.31151 136.38 2 Median 0.24259 0.31151 136.38 2 0 Median NaN NaN NaN 0 0 Median 8940500 6925600 2014900 8940500 6925600 2014900 0 0 0 7802 1358 7974 28465;28466;28467 42972;42973;42974;42975 42974 4 LQDAINILK GKYVGLVRVLAKHGKLQDAINILKEMKEKD LAKHGKLQDAINILKEMKEKDVLIKDTTAL K L Q L K E 1 0 1 1 0 1 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1026.6073 E5KNY5;P42704;B4DSR0 E5KNY5 764 772 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.0003078 99.136 4 0.42729 0.54188 NaN 1 Median 0.42729 0.54188 NaN 1 0 Median NaN NaN NaN 0 0 Median 23829000 21253000 2576600 23829000 21253000 2576600 0 0 0 7803 1001 7975 28468;28469;28470;28471 42976;42977;42978;42979 42979 4 LQDASAEVER KVEELEGEITTLNHKLQDASAEVERLRREN TLNHKLQDASAEVERLRRENQVLSVRIADK K L Q E R L 2 1 0 1 0 1 2 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1116.5411 A0A024R7H5;B4E0Z6;Q10589 A0A024R7H5 127 136 BST2 Bone marrow stromal antigen 2 yes no 2 0.00011074 94.692 1 1 0.71102 0.94417 119.04 2 Median 0.29749 0.40691 NaN 1 0 Median 1.6994 2.1908 NaN 1 0 Median 8726200 4649500 4076700 3715700 2889200 826580 5010500 1760300 3250100 7804 177 7976 28472;28473 42980;42981 42980 2 LQDEIQNMK NFAVEAANYQDTIGRLQDEIQNMKEEMARH QDTIGRLQDEIQNMKEEMARHLREYQDLLN R L Q M K E 0 0 1 1 0 2 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 9 0 1117.5438 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;B0YJC5 V9HWE1 365 373 HEL113;VIM Vimentin yes no 2 0.0002437 123.98 3 0.69416 0.87921 3.8825 3 Median 0.69416 0.87921 3.8825 3 0 Median NaN NaN NaN 0 0 Median 20181000 12284000 7897500 20181000 12284000 7897500 0 0 0 7805 1245 7977 28474;28475;28476 42982;42983;42984;42985 42982 4 LQDEIQNMKEEMAR NFAVEAANYQDTIGRLQDEIQNMKEEMARH RLQDEIQNMKEEMARHLREYQDLLNVKMAL R L Q A R H 1 1 1 1 0 2 3 0 0 1 1 1 2 0 0 0 0 0 0 0 0 0 14 1 1733.8077 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;B0YJC5 V9HWE1 365 378 HEL113;VIM Vimentin yes no 3 0.00024296 53.946 2 1.0171 1.5709 1.4709 2 Median NaN NaN NaN 0 0 Median 1.0171 1.5709 1.4709 2 0 Median 20368000 10012000 10356000 0 0 0 20368000 10012000 10356000 7806 1245 7978 28477;28478 42986;42987 42986 487;488 2 LQDGTPQAALSPLTPAR DRVHKFTSDSPMAARLQDGTPQAALSPLTP DGTPQAALSPLTPARLLGPSLTSTTPASSS R L Q A R L 3 1 0 1 0 2 0 1 0 0 3 0 0 0 3 1 2 0 0 0 0 0 17 0 1734.9264 Q59F18;B3KY54;B3KUD6;B4E229;B4DI56;A0A087WVP4;A0A087X1R1;P53814;B3KY41 Q59F18 285 301 SMTN Smoothelin yes no 2 0.026134 44.616 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7807 349 7979 28479 42988 42988 1 LQDGVHIIK EKNPDEFYYKMTRVKLQDGVHIIKETKEEV KMTRVKLQDGVHIIKETKEEVTPEQLKLMR K L Q I K E 0 0 0 1 0 1 0 1 1 2 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1021.592 Q9Y3A2 Q9Y3A2 75 83 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 2 0.0027589 81.296 1 1.1935 1.515 NaN 1 Median 1.1935 1.515 NaN 1 0 Median NaN NaN NaN 0 0 Median 9578900 4276100 5302800 9578900 4276100 5302800 0 0 0 7808 1814 7980 28480 42989 42989 1 LQDLAGGIFPEDEIPEK TPSQNRKRLYKVIRKLQDLAGGIFPEDEIP DLAGGIFPEDEIPEKACRRLLEGRRQKKTK K L Q E K A 1 0 0 2 0 1 3 2 0 2 2 1 0 1 2 0 0 0 0 0 0 0 17 0 1869.936 Q6PJJ2;P56182;B4DZM3;Q53FR7;Q96J73 Q6PJJ2 336 352 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 2 8.0833E-10 118.52 4 2 0.81526 1.0106 10.87 6 Median 0.81784 1.0222 1.4055 4 0 Median 0.5258 0.8282 2.0928 2 0 Median 163040000 96022000 67016000 98050000 54930000 43120000 64988000 41091000 23896000 7809 1381 7981 28481;28482;28483;28484;28485;28486 42990;42991;42992;42993;42994;42995;42996;42997;42998;42999;43000;43001;43002 42993 13 LQDPKDDECPVVNAYATLIENDSNPEVR KIPNVRIQAVLALSRLQDPKDDECPVVNAY AYATLIENDSNPEVRRAVLSCIAPSAKTLP R L Q V R R 2 1 3 4 1 1 3 0 0 1 2 1 0 0 3 1 1 0 1 3 0 0 28 1 3200.4932 Q9BPX3;Q6NUR1;D6RA93 Q9BPX3 169 196 NCAPG Condensin complex subunit 3 yes no 3 2.3071E-36 143.47 4 0.6892 0.91103 1.627 4 Median 0.6892 0.91103 1.627 4 0 Median NaN NaN NaN 0 0 Median 230370000 131570000 98800000 230370000 131570000 98800000 0 0 0 7810 1706 7982 28487;28488;28489;28490 43003;43004;43005;43006;43007;43008;43009;43010 43003 8 LQEAGILSAEELQR EHSFDGLRRKVSAQRLQEAGILSAEELQRL RLQEAGILSAEELQRLAQGHTTVDELARRE R L Q Q R L 2 1 0 0 0 2 3 1 0 1 3 0 0 0 0 1 0 0 0 0 0 0 14 0 1555.8206 Q15149;D3DWL0 Q15149 2795 2808 PLEC;PLEC1 Plectin yes no 2 2.5211E-61 242.97 5 2 0.81438 1.1004 25.612 6 Median 0.69909 0.939 16.301 4 0 Median 1.1309 1.5524 3.8971 2 0 Median 127290000 69463000 57826000 115790000 64672000 51122000 11495000 4791600 6703800 7811 1507 7983 28491;28492;28493;28494;28495;28496;28497 43011;43012;43013;43014;43015;43016;43017;43018 43012 8 LQEDTSAHQNVVAETLSALENK MHQSFVAETSQRISKLQEDTSAHQNVVAET HQNVVAETLSALENKEKELQLLNDKVETEQ K L Q N K E 3 0 2 1 0 2 3 0 1 0 3 1 0 0 0 2 2 0 0 2 0 0 22 0 2396.1819 P49454 P49454 888 909 CENPF Centromere protein F yes yes 3 1.0492E-07 99.873 4 0.9477 1.1754 11.874 4 Median 0.9477 1.1754 11.874 4 0 Median NaN NaN NaN 0 0 Median 82636000 42415000 40221000 82636000 42415000 40221000 0 0 0 7812 1351 7984 28498;28499;28500;28501 43019;43020;43021;43022;43023;43024;43025 43019 7 LQEEEQKKEELAR AEVEAQKAQQLEEARLQEEEQKKEELARLR ARLQEEEQKKEELARLRRELVHKANPIRKY R L Q A R L 1 1 0 0 0 2 5 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 13 2 1628.837 Q643R0;Q9ULW0;B3KM90;Q96FC3 Q643R0 694 706 HCTP4;TPX2 Targeting protein for Xklp2 yes no 3 0.012124 67.019 1 0.84902 1.0423 NaN 1 Median 0.84902 1.0423 NaN 1 0 Median NaN NaN NaN 0 0 Median 1138300 602680 535630 1138300 602680 535630 0 0 0 7813 1581 7985 28502 43026 43026 1 LQEELSENDK RSAEELKEMQDKVIKLQEELSENDKKIKAL DKVIKLQEELSENDKKIKALNHEIEELEKR K L Q D K K 0 0 1 1 0 1 3 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1203.5619 A0A024R158;O95347;B7ZLZ7;A8K984;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q05D74;Q7Z2X1;Q5T821 A0A024R158 263 272 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 5.0047E-37 213.85 3 4 0.72503 0.90555 10.36 3 Median 0.72503 0.90555 10.36 3 0 Median NaN NaN NaN 0 0 Median 143260000 113860000 29404000 73518000 44114000 29404000 69747000 69747000 0 7814 50 7986 28503;28504;28505;28506;28507;28508;28509 43027;43028;43029;43030;43031;43032;43033;43034;43035 43030 9 LQEELSENDKK RSAEELKEMQDKVIKLQEELSENDKKIKAL KVIKLQEELSENDKKIKALNHEIEELEKRK K L Q K K I 0 0 1 1 0 1 3 0 0 0 2 2 0 0 0 1 0 0 0 0 0 0 11 1 1331.6569 A0A024R158;O95347;B7ZLZ7;A8K984;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q05D74;Q7Z2X1;Q5T821 A0A024R158 263 273 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2;3 2.8378E-41 210.64 6 3 0.64323 0.94397 18.287 7 Median 0.70363 0.86635 21.65 4 0 Median 0.61333 0.976 3.4544 3 0 Median 260160000 159640000 100520000 193110000 118110000 75002000 67048000 41531000 25517000 7815 50 7987 28510;28511;28512;28513;28514;28515;28516;28517;28518 43036;43037;43038;43039;43040;43041;43042;43043;43044;43045;43046;43047;43048 43037 13 LQEEMLQR ERDNLAEDIMRLREKLQEEMLQREEAENTL IMRLREKLQEEMLQREEAENTLQSFRQDVD K L Q Q R E 0 1 0 0 0 2 2 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 8 0 1045.5226 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;B0YJC5;Q5JVS8 V9HWE1 189 196 HEL113;VIM Vimentin yes no 2 0.0039494 81.191 3 0.9077 1.3071 5.7693 3 Plateau NaN NaN NaN 0 0 Median 0.9077 1.3071 5.7693 3 0 Plateau 16428000 8749400 7679000 0 0 0 16428000 8749400 7679000 7816 1245 7988 28519;28520;28521 43049;43050;43051;43052;43053 43049 489 5 LQEEMLQREEAENTLQSFR ERDNLAEDIMRLREKLQEEMLQREEAENTL MLQREEAENTLQSFRQDVDNASLARLDLER K L Q F R Q 1 2 1 0 0 3 5 0 0 0 3 0 1 1 0 1 1 0 0 0 0 0 19 1 2350.1223 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;B0YJC5;Q5JVS8 V9HWE1 189 207 HEL113;VIM Vimentin yes no 3 4.4347E-18 132.51 8 2 0.76649 1.0301 17.679 9 Median 0.7156 0.99285 9.0802 7 0 Median 0.90932 1.4058 0.52427 2 0 Median 175790000 92480000 83307000 104060000 54498000 49557000 71732000 37982000 33750000 7817 1245 7989;7990 28522;28523;28524;28525;28526;28527;28528;28529;28530;28531 43054;43055;43056;43057;43058;43059;43060;43061;43062;43063;43064;43065;43066;43067;43068;43069;43070;43071;43072;43073;43074;43075;43076 43064 489 23 LQEIHPECGPCK QYMLNAGLAKVVSLRLQEIHPECGPCKTKK SLRLQEIHPECGPCKTKKGTDVMVRCLKLL R L Q C K T 0 0 0 0 2 1 2 1 1 1 1 1 0 0 2 0 0 0 0 0 0 0 12 0 1466.6646 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 310 321 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.034137 72.29 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1137100 1137100 0 1137100 1137100 0 0 0 0 7818 1457 7991 28532 43077 43077 1 LQELEANPPSDVYLSSR EYDELAETQGKLEEKLQELEANPPSDVYLS ELEANPPSDVYLSSRDRQILDWHFANLEFA K L Q S R D 1 1 1 1 0 1 2 0 0 0 3 0 0 0 2 3 0 0 1 1 0 0 17 0 1916.948 A8K2R3;O60341 A8K2R3 386 402 KDM1A Lysine-specific histone demethylase 1A yes no 2 1.7481E-10 132.24 3 1 0.65123 0.8992 28.05 4 Median 0.60607 0.85328 8.7467 3 0 Median 1.0514 1.4856 NaN 1 0 Median 23875000 12548000 11328000 16344000 8966700 7376900 7531500 3580900 3950600 7819 583 7992 28533;28534;28535;28536 43078;43079;43080;43081;43082;43083 43079 6 LQELEGQIADLK KDANQAKLSERRRKRLQELEGQIADLKKKL RKRLQELEGQIADLKKKLNEQSKLLKLKES R L Q L K K 1 0 0 1 0 2 2 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 12 0 1355.7296 Q59HG1;O95239;Q6PKB2 Q59HG1 605 616 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 0.00038656 119.03 4 2 0.60255 0.82724 7.8368 4 Median 0.69549 0.87746 3.1934 2 0 Median 0.51727 0.77432 4.2061 2 0 Median 63015000 38948000 24068000 39984000 23958000 16026000 23032000 14990000 8041700 7820 1216 7993 28537;28538;28539;28540;28541;28542 43084;43085;43086;43087;43088;43089;43090;43091;43092;43093 43089 10 LQENPESCLSIVR LKKMSPQELKEVDSKLQENPESCLSIVREK SKLQENPESCLSIVREKLYKGISWVEVEAK K L Q V R E 0 1 1 0 1 1 2 0 0 1 2 0 0 0 1 2 0 0 0 1 0 0 13 0 1543.7664 B4DZG2;A0A024R8C1;Q15361;A0A087WY09 B4DZG2 701 713 TTF1 Transcription termination factor 1 yes no 2 0.0082185 75.739 1 1.0914 1.5422 NaN 1 Median 1.0914 1.5422 NaN 1 0 Median NaN NaN NaN 0 0 Median 3957600 1888800 2068800 3957600 1888800 2068800 0 0 0 7821 195 7994 28543 43094 43094 1 LQETLSAADR ______________________________ CSLLRLQETLSAADRCGAALAGHQLIRGLG R L Q D R C 2 1 0 1 0 1 1 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 10 0 1102.5619 P78527;B4DL41 P78527 15 24 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 5.7351E-05 103.7 2 0.38453 0.51487 18.384 2 Median 0.38453 0.51487 18.384 2 0 Median NaN NaN NaN 0 0 Median 48534000 34099000 14434000 48534000 34099000 14434000 0 0 0 7822 1427 7995 28544;28545 43095;43096 43096 2 LQETSSQSYVEEQK YVDEENSDGETSNHRLQETSSQSYVEEQKQ RLQETSSQSYVEEQKQLKESFRAFVEDSED R L Q Q K Q 0 0 0 0 0 3 3 0 0 0 1 1 0 0 0 3 1 0 1 1 0 0 14 0 1654.7686 Q8N9T8;A0A024R7C4;B4DUT2;B4DUY9;B7ZLF4;H0YFD2;F8WFC1 Q8N9T8 145 158 KRI1;FLJ12949 Protein KRI1 homolog yes no 2 1.8047E-20 169.82 4 2 0.75183 0.93034 12.865 5 Median 0.75314 0.93702 6.3113 3 0 Median 0.51472 0.777 1.0651 2 0 Median 65828000 41341000 24487000 32777000 19707000 13071000 33051000 21635000 11417000 7823 1645 7996 28546;28547;28548;28549;28550;28551 43097;43098;43099;43100;43101;43102;43103;43104;43105;43106;43107;43108;43109 43099 13 LQEVDSLWK TSVGYAIFKVLNEKKLQEVDSLWKEFETPE VLNEKKLQEVDSLWKEFETPEKANKIVKLK K L Q W K E 0 0 0 1 0 1 1 0 0 0 2 1 0 0 0 1 0 1 0 1 0 0 9 0 1116.5815 Q9Y2X3;B4DUY3;F8WED0 Q9Y2X3 22 30 NOP58 Nucleolar protein 58 yes no 2 0.0093519 66.692 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3943000 3943000 0 0 0 0 3943000 3943000 0 7824 1810 7997 28552 43110 43110 1 LQEVFGHAIK ERNKPTKNMINIISRLQEVFGHAIKAAYPD NIISRLQEVFGHAIKAAYPDLENPPLLVTP R L Q I K A 1 0 0 0 0 1 1 1 1 1 1 1 0 1 0 0 0 0 0 1 0 0 10 0 1140.6291 P54136;E5RJM9;E5RH09 P54136 80 89 RARS Arginine--tRNA ligase, cytoplasmic yes no 3 0.041169 25.126 1 0.44751 0.57156 NaN 1 Median 0.44751 0.57156 NaN 1 0 Median NaN NaN NaN 0 0 Median 5314100 3503100 1811000 5314100 3503100 1811000 0 0 0 7825 1373 7998 28553 43111 43111 1 LQEVIETLLSLEK DQRLPECAKLAKEGRLQEVIETLLSLEKQT GRLQEVIETLLSLEKQTRTASDMVSTSRIL R L Q E K Q 0 0 0 0 0 1 3 0 0 1 4 1 0 0 0 1 1 0 0 1 0 0 13 0 1513.8603 A0A0S2Z489;O00232;A0A0S2Z476 A0A0S2Z489 40 52 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 2 5.7147E-08 96.103 2 0.37443 0.48109 59.695 2 Median 0.37443 0.48109 59.695 2 0 Median NaN NaN NaN 0 0 Median 12836000 9564500 3271700 12836000 9564500 3271700 0 0 0 7826 461 7999 28554;28555 43112;43113;43114 43112 3 LQFIFTNIDPK KDRLGLEIRKIYGEKLQFIFTNIDPKNPES YGEKLQFIFTNIDPKNPESPFMFSLHLNEA K L Q P K N 0 0 1 1 0 1 0 0 0 2 1 1 0 2 1 0 1 0 0 0 0 0 11 0 1334.7234 Q9HBM1 Q9HBM1 154 164 SPC25 Kinetochore protein Spc25 yes yes 2 0.0003798 122.96 2 1 0.52273 0.69283 9.9047 3 Median 0.52674 0.66189 6.46 2 0 Median 0.52273 0.77072 NaN 1 0 Median 25691000 17037000 8653700 18482000 11968000 6513700 7209300 5069300 2140000 7827 1749 8000 28556;28557;28558 43115;43116;43117 43115 3 LQFLFAK MRHQKRNVYHCNKCRLQFLFAKDKIEHKLQ VYHCNKCRLQFLFAKDKIEHKLQHHKTFRK R L Q A K D 1 0 0 0 0 1 0 0 0 0 2 1 0 2 0 0 0 0 0 0 0 0 7 0 865.50617 Q7Z3K3;B4DSK8;H0YCT3 Q7Z3K3 654 660 POGZ Pogo transposable element with ZNF domain yes no 2 0.04952 84.359 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7828 1614 8001 28559 43118 43118 1 LQFLTSK MKHQKKGVHRCPKCRLQFLTSKEKAEHKAQ VHRCPKCRLQFLTSKEKAEHKAQHRTFIKP R L Q S K E 0 0 0 0 0 1 0 0 0 0 2 1 0 1 0 1 1 0 0 0 0 0 7 0 835.48035 Q8ND82;Q9UJJ2 Q8ND82 477 483 ZNF280C Zinc finger protein 280C yes no 2 0.014985 91.626 1 0.88201 1.1192 NaN 1 Median 0.88201 1.1192 NaN 1 0 Median NaN NaN NaN 0 0 Median 7116500 3867200 3249300 7116500 3867200 3249300 0 0 0 7829 1652 8002 28560 43119 43119 1 LQGAASHVPEGFDPTGPAGLGRPTPGLSQGPGK TTGSAAGPPLSEDDKLQGAASHVPEGFDPT GLGRPTPGLSQGPGKETLESALIALDSEKP K L Q G K E 3 1 0 1 0 2 1 8 1 0 3 1 0 1 6 2 2 0 0 1 0 0 33 1 3152.6003 A0A1B0GV09;Q9H9B1;A0A1B0GU48 A0A1B0GV09 654 686 EHMT1 Histone-lysine N-methyltransferase EHMT1 no no 4 8.202E-07 70.051 4 2 0.66541 0.88097 28.949 6 Median 0.58027 0.76699 21.862 4 0 Median 0.77663 1.2045 0.29655 2 0 Median 47608000 27476000 20132000 26255000 15415000 10840000 21353000 12061000 9292100 7830 518 8003 28561;28562;28563;28564;28565;28566 43120;43121;43122;43123;43124;43125;43126;43127;43128 43121 9 LQGDANNLHGFEVDSR TRLSAYVSYGGLLMRLQGDANNLHGFEVDS QGDANNLHGFEVDSRVYLLMKKL_______ R L Q S R V 1 1 2 2 0 1 1 2 1 0 2 0 0 1 0 1 0 0 0 1 0 0 16 0 1770.8285 C9JLU1;P52434 C9JLU1 125 140 POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3 yes no 3 1.943E-05 73.983 4 1 0.50011 0.66934 47.91 5 Median 0.47518 0.63387 17.091 4 0 Median 1.1898 1.7695 NaN 1 0 Median 57432000 36854000 20577000 50781000 33877000 16904000 6650800 2977700 3673000 7831 940 8004 28567;28568;28569;28570;28571 43129;43130;43131;43132;43133;43134;43135 43132 7 LQGEIAHVK EIKIEISELNRVIQRLQGEIAHVKKQCKNV NRVIQRLQGEIAHVKKQCKNVQDAIADAEQ R L Q V K K 1 0 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 9 0 993.56073 CON__P35908;P35908 CON__P35908 412 420 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2;3 7.4125E-05 118.74 4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77682000 77682000 0 49286000 49286000 0 28395000 28395000 0 + 7832 964 8005 28572;28573;28574;28575;28576;28577 43136;43137;43138;43139;43140;43141 43139 6 LQGEIAHVKK EIKIEISELNRVIQRLQGEIAHVKKQCKNV RVIQRLQGEIAHVKKQCKNVQDAIADAEQR R L Q K K Q 1 0 0 0 0 1 1 1 1 1 1 2 0 0 0 0 0 0 0 1 0 0 10 1 1121.6557 CON__P35908;P35908 CON__P35908 412 421 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2 0.03607 80.219 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1338700 1338700 0 1338700 1338700 0 0 0 0 + 7833 964 8006 28578 43142 43142 1 LQGEVVAFDYQSK SVGSQVSCRTCQEQRLQGEVVAFDYQSKML QRLQGEVVAFDYQSKMLALKCPSSSGKPNH R L Q S K M 1 0 0 1 0 2 1 1 0 0 1 1 0 1 0 1 0 0 1 2 0 0 13 0 1482.7355 B4DUG4;K7ELG9;Q3MHD2 B4DUG4 25 37 LSM12 Protein LSM12 homolog yes no 2 3.9305E-05 81.475 1 0.39081 0.49614 NaN 1 Median 0.39081 0.49614 NaN 1 0 Median NaN NaN NaN 0 0 Median 6840400 4910800 1929600 6840400 4910800 1929600 0 0 0 7834 860 8007 28579 43143 43143 1 LQGHTDVVISTACHPTENIIASAALENDK LVYIWNLQTKEIVQKLQGHTDVVISTACHP PTENIIASAALENDKTIKLWKSDC______ K L Q D K T 4 0 2 2 1 1 2 1 2 3 2 1 0 0 1 2 3 0 0 2 0 0 29 0 3103.5244 P61964 P61964 297 325 WDR5 WD repeat-containing protein 5 yes yes 4 0.023307 15.938 1 0.83707 1.0391 NaN 1 Median 0.83707 1.0391 NaN 1 0 Median NaN NaN NaN 0 0 Median 30736000 14707000 16028000 30736000 14707000 16028000 0 0 0 7835 1394 8008 28580 43144;43145 43144 2 LQGIDLDR ELKDVERKIAQQAAKLQGIDLDRTVQQVNQ IAQQAAKLQGIDLDRTVQQVNQEKQEKQHK K L Q D R T 0 1 0 2 0 1 0 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 8 0 928.49779 Q92878 Q92878 816 823 RAD50 DNA repair protein RAD50 yes yes 2 0.019113 58.981 1 1 0.7407 1.0086 85.302 2 Median 0.39164 0.55176 NaN 1 0 Median 1.4008 1.8436 NaN 1 0 Median 8461700 5346500 3115200 5395100 4160600 1234500 3066600 1185900 1880700 7836 1676 8009 28581;28582 43146;43147 43146 2 LQGLSASDVTEQIIK QRMNEQPRQLFWEKRLQGLSASDVTEQIIK LQGLSASDVTEQIIKTMELPKGLQGVGPGS R L Q I K T 1 0 0 1 0 2 1 1 0 2 2 1 0 0 0 2 1 0 0 1 0 0 15 0 1600.8672 Q9UBB5;O60535 Q9UBB5 287 301 MBD2;NY-CO-41 Methyl-CpG-binding domain protein 2 yes no 2 2.8445E-07 89.301 1 1.0053 1.5159 NaN 1 Median NaN NaN NaN 0 0 Median 1.0053 1.5159 NaN 1 0 Median 17910000 7166700 10744000 0 0 0 17910000 7166700 10744000 7837 1781 8010 28583 43148;43149 43148 2 LQGQITEGSNMIK RRAQARASEDLEKLRLQGQITEGSNMIKTI LRLQGQITEGSNMIKTIAFGRYELDTWYHS R L Q I K T 0 0 1 0 0 2 1 2 0 2 1 1 1 0 0 1 1 0 0 0 0 0 13 0 1417.7235 O95251;E7EUP3;B7Z4D9;B3KVJ2;B4DG18 O95251 326 338 KAT7 Histone acetyltransferase KAT7;Histone acetyltransferase yes no 2 0.0001397 69.979 2 0.61121 0.91773 2.3599 2 Median NaN NaN NaN 0 0 Median 0.61121 0.91773 2.3599 2 0 Median 22183000 13801000 8382600 0 0 0 22183000 13801000 8382600 7838 1217 8011 28584;28585 43150;43151;43152;43153 43150 457 4 LQGQLEQGDDTAAER RADTKRLKLLEEERRLQGQLEQGDDTAAER LQGQLEQGDDTAAERLEKVYEELRATGAAA R L Q E R L 2 1 0 2 0 3 2 2 0 0 2 0 0 0 0 0 1 0 0 0 0 0 15 0 1629.7594 Q8NE71;Q2L6I2;Q59F96;H0YGW7 Q8NE71 397 411 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 2.4644E-21 174.05 4 1 0.61725 0.83727 27.727 5 Median 0.60959 0.83371 17.489 4 0 Median 0.97126 1.3972 NaN 1 0 Median 31064000 17053000 14011000 19903000 11529000 8373600 11161000 5523600 5637400 7839 1653 8012 28586;28587;28588;28589;28590 43154;43155;43156;43157;43158;43159;43160;43161;43162 43156 9 LQGQLEQGDDTAAERLEK RADTKRLKLLEEERRLQGQLEQGDDTAAER QLEQGDDTAAERLEKVYEELRATGAAAAEA R L Q E K V 2 1 0 2 0 3 3 2 0 0 3 1 0 0 0 0 1 0 0 0 0 0 18 1 1999.9811 Q8NE71;Q2L6I2;Q59F96;H0YGW7 Q8NE71 397 414 ABCF1 ATP-binding cassette sub-family F member 1 yes no 3 1.4958E-05 55.589 2 0.61226 0.80075 8.6978 2 Median 0.61226 0.80075 8.6978 2 0 Median NaN NaN NaN 0 0 Median 35419000 20916000 14503000 35419000 20916000 14503000 0 0 0 7840 1653 8013 28591;28592 43163;43164;43165 43165 3 LQGTQGAKEAPLQR RQELWQGLEELRLRRLQGTQGAKEAPLQRL RLQGTQGAKEAPLQRLTPQVAASGGQS___ R L Q Q R L 2 1 0 0 0 3 1 2 0 0 2 1 0 0 1 0 1 0 0 0 0 0 14 1 1495.8107 A0A024R593;Q15173 A0A024R593 472 485 PPP2R5B Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform yes no 2 0.00036346 104.07 2 0.80412 1.0654 6.1931 2 Median 0.80412 1.0654 6.1931 2 0 Median NaN NaN NaN 0 0 Median 184930000 103560000 81364000 184930000 103560000 81364000 0 0 0 7841 138 8014 28593;28594 43166;43167;43168;43169 43169 4 LQHPSAEVR GGEEDDGPAAELLEKLQHPSAEVRECACAG AELLEKLQHPSAEVRECACAGLARLVQQRP K L Q V R E 1 1 0 0 0 1 1 0 1 0 1 0 0 0 1 1 0 0 0 1 0 0 9 0 1035.5461 Q7Z4Q2 Q7Z4Q2 47 55 HEATR3 HEAT repeat-containing protein 3 yes yes 3 0.029468 28.727 1 0.73441 0.97945 NaN 1 Median 0.73441 0.97945 NaN 1 0 Median NaN NaN NaN 0 0 Median 6155400 3686100 2469300 6155400 3686100 2469300 0 0 0 7842 1616 8015 28595 43170 43170 1 LQIASDENYK FQRDAEELEKWIQEKLQIASDENYKDPTNL WIQEKLQIASDENYKDPTNLQGKLQKHQAF K L Q Y K D 1 0 1 1 0 1 1 0 0 1 1 1 0 0 0 1 0 0 1 0 0 0 10 0 1179.5772 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8;A0A0D9SFF6 Q13813 64 73 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.0010678 120.87 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3826700 0 3826700 3826700 0 3826700 0 0 0 7843 1476 8016 28596;28597 43171;43172 43171 2 LQIASDENYKDPTNLQGK FQRDAEELEKWIQEKLQIASDENYKDPTNL ASDENYKDPTNLQGKLQKHQAFEAEVQANS K L Q G K L 1 0 2 2 0 2 1 1 0 1 2 2 0 0 1 1 1 0 1 0 0 0 18 1 2033.0065 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8;A0A0D9SFF6 Q13813 64 81 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 3 0.0019 100.58 2 0.84926 1.042 NaN 1 Median 0.84926 1.042 NaN 1 0 Median NaN NaN NaN 0 0 Median 13109000 7929800 5178800 13109000 7929800 5178800 0 0 0 7844 1476 8017 28598;28599 43173;43174 43173 2 LQIDEQLR HIAYLKEVEQLRMERLQIDEQLRQIGMGFR EQLRMERLQIDEQLRQIGMGFRPSSTRGPE R L Q L R Q 0 1 0 1 0 2 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 8 0 1013.5506 X5DQX7;Q06787;W5ZQ92;R9WQY1;A8MQB8;G3V0J0;X5D907;R9WNI0;Q59GC1;B4DFH8;B4DZ17;A0A0F7KYT8;A0A0F7L0Q8;B4DXZ6;A0A0F7L1S3;P51114;B4DM78;E7EU85;B4DGH9;E9PFF5;B4DM21;P51116 A0A0F7KYT8 369 376 FMR1;FXR1;FXR2 Fragile X mental retardation protein 1;Fragile X mental retardation syndrome-related protein 1;Fragile X mental retardation syndrome-related protein 2 no no 2 0.00058152 125.25 4 2 0.75402 1.0388 9.5567 4 Median 0.74344 1.0357 3.0876 3 0 Median 0.76623 1.2271 NaN 1 0 Median 280020000 160390000 119630000 229240000 140880000 88363000 50772000 19507000 31265000 7845 438;1447;1360 8018 28600;28601;28602;28603;28604;28605 43175;43176;43177;43178;43179;43180;43181;43182 43177 8 LQIDVDGR PCIMVVNHDASSIPRLQIDVDGRKEILFYD DASSIPRLQIDVDGRKEILFYDRILCDVPC R L Q G R K 0 1 0 2 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 914.48214 Q08J23 Q08J23 249 256 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 0.036271 47.082 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2502600 2502600 0 2502600 2502600 0 0 0 0 7846 1451 8019 28606 43183 43183 1 LQIDVDGRK PCIMVVNHDASSIPRLQIDVDGRKEILFYD ASSIPRLQIDVDGRKEILFYDRILCDVPCS R L Q R K E 0 1 0 2 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 9 1 1042.5771 Q08J23 Q08J23 249 257 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 3 0.01072 45.022 2 0.26606 0.35056 17.835 2 Median 0.26606 0.35056 17.835 2 0 Median NaN NaN NaN 0 0 Median 23641000 18238000 5403500 23641000 18238000 5403500 0 0 0 7847 1451 8020 28607;28608 43184;43185 43185 2 LQIELGK DARRALDDTARERAKLQIELGKCKAEHDQL DTARERAKLQIELGKCKAEHDQLLLNYAKK K L Q G K C 0 0 0 0 0 1 1 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 799.48035 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;A0A0D9SFY5 P20700 103 109 LMNB1 Lamin-B1 yes no 2 0.013979 97.071 4 2 1.4184 1.7704 19.34 6 Median 1.3553 1.6901 10.876 4 0 Median 1.5275 2.2973 3.8464 2 0 Median 89187000 37553000 51633000 67128000 28369000 38759000 22059000 9184700 12874000 7848 1285 8021 28609;28610;28611;28612;28613;28614 43186;43187;43188;43189;43190;43191;43192;43193;43194;43195 43191 10 LQIFSVEGQK VEKTIKLLPSSHVARLQIFSVEGQKAIQIK SHVARLQIFSVEGQKAIQIKHQDEVNWIAG R L Q Q K A 0 0 0 0 0 2 1 1 0 1 1 1 0 1 0 1 0 0 0 1 0 0 10 0 1147.6237 A6NHR9;J3KTL8 A6NHR9 1039 1048 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.0068643 88.177 2 0.83759 1.0665 2.4618 2 Median 0.83759 1.0665 2.4618 2 0 Median NaN NaN NaN 0 0 Median 9904700 5248700 4656000 9904700 5248700 4656000 0 0 0 7849 568 8022 28615;28616 43196;43197 43196 2 LQIIPTLCHLLR EMPDSAAALLGTCCKLQIIPTLCHLLRALS CCKLQIIPTLCHLLRALSDDGVSDLEDPTL K L Q L R A 0 1 0 0 1 1 0 0 1 2 4 0 0 0 1 0 1 0 0 0 0 0 12 0 1475.8646 A8K410;A0A024RA58;O60443;A4FTY0;A4FVA8 A8K410 410 421 DFNA5 Non-syndromic hearing impairment protein 5 yes no 3 0.0034615 106.16 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3702900 3702900 0 3702900 3702900 0 0 0 0 7850 237 8023 28617;28618 43198;43199 43198 2 LQILSLR NDFEILPPDIGKLTKLQILSLRDNDLISLP PDIGKLTKLQILSLRDNDLISLPKEIGELT K L Q L R D 0 1 0 0 0 1 0 0 0 1 3 0 0 0 0 1 0 0 0 0 0 0 7 0 841.53854 Q32Q10;Q15404;B0YJ73 Q32Q10 162 168 RSU1 Ras suppressor protein 1 yes no 2 0.019678 68.915 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2521400 2521400 0 2521400 2521400 0 0 0 0 7851 1512 8024 28619 43200 43200 1 LQILTALCHR KLETSEFFELTSEEKLQILTALCHRILMTY TSEEKLQILTALCHRILMTYSVQDHMETRQ K L Q H R I 1 1 0 0 1 1 0 0 1 1 3 0 0 0 0 0 1 0 0 0 0 0 10 0 1223.6809 Q9UIG0 Q9UIG0 746 755 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2;3 8.7149E-05 109.66 5 2 21.688 29.096 NaN 1 Median 21.688 29.096 NaN 1 0 Median NaN NaN NaN 0 0 Median 121580000 1056000 120530000 113650000 1056000 112600000 7930600 0 7930600 7852 1786 8025 28620;28621;28622;28623;28624;28625;28626 43201;43202;43203;43204;43205;43206;43207 43205 7 LQIQCVVEDDK WGASKLVPVGYGIRKLQIQCVVEDDKVGTD GIRKLQIQCVVEDDKVGTDLLEE_______ K L Q D K V 0 0 0 2 1 2 1 0 0 1 1 1 0 0 0 0 0 0 0 2 0 0 11 0 1345.6548 E9PK01;P29692;D3DWK1;B2RAR6;E9PRY8;Q9BW34;E9PQZ1;H0YE58;H0YE72;A0A024R3W7;P24534;A4D1M6 E9PK01 243 253 EEF1D;EEF1B2;LOC392793 Elongation factor 1-delta;Elongation factor 1-beta no no 2 0.0048853 112.3 3 0.28392 0.36046 NaN 1 Median 0.28392 0.36046 NaN 1 0 Median NaN NaN NaN 0 0 Median 11838000 7564100 4274200 11838000 7564100 4274200 0 0 0 7853 1035;109 8026 28627;28628;28629 43208;43209;43210 43209 3 LQISHEAAACITGLR VQSDGQIVLVDDWIKLQISHEAAACITGLR LQISHEAAACITGLRAAMEALVVEVTKQPA K L Q L R A 3 1 0 0 1 1 1 1 1 2 2 0 0 0 0 1 1 0 0 0 0 0 15 0 1638.8512 Q08211;B3KU66 Q08211 1090 1104 DHX9 ATP-dependent RNA helicase A yes no 2;3 4.1518E-21 161.87 7 2 0.67587 0.94708 9.1253 6 Median 0.67587 0.94708 9.1253 6 0 Median NaN NaN NaN 0 0 Median 499690000 287160000 212530000 490630000 287160000 203460000 9067600 0 9067600 7854 1448 8027 28630;28631;28632;28633;28634;28635;28636;28637;28638 43211;43212;43213;43214;43215;43216;43217;43218;43219;43220;43221;43222;43223;43224;43225;43226 43217 16 LQISTNLQR IQHLKSTTNELKSEKLQISTNLQRRQQLEE ELKSEKLQISTNLQRRQQLEEQTVELSTEV K L Q Q R R 0 1 1 0 0 2 0 0 0 1 2 0 0 0 0 1 1 0 0 0 0 0 9 0 1071.6037 Q92878 Q92878 875 883 RAD50 DNA repair protein RAD50 yes yes 2 0.0027589 81.296 2 0.55773 0.75428 NaN 1 Median 0.55773 0.75428 NaN 1 0 Median NaN NaN NaN 0 0 Median 11016000 8555000 2460600 11016000 8555000 2460600 0 0 0 7855 1676 8028 28639;28640 43227;43228;43229 43227 3 LQLEACETR ESRCQRCISELKDIRLQLEACETRTVHRLR ELKDIRLQLEACETRTVHRLRLPLDKEPAR R L Q T R T 1 1 0 0 1 1 2 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1118.539 Q15149 Q15149 1131 1139 PLEC Plectin yes yes 2 0.0019745 122.19 3 1.811 2.4392 89.737 2 Median 1.811 2.4392 89.737 2 0 Median NaN NaN NaN 0 0 Median 62727000 27589000 35138000 62727000 27589000 35138000 0 0 0 7856 1507 8029 28641;28642;28643 43230;43231;43232 43231 3 LQLEETDHQK LRQKAQVEQELTTLRLQLEETDHQKNLLDE LTTLRLQLEETDHQKNLLDEELQRLKAEAT R L Q Q K N 0 0 0 1 0 2 2 0 1 0 2 1 0 0 0 0 1 0 0 0 0 0 10 0 1239.6095 Q15149 Q15149 2330 2339 PLEC Plectin yes yes 2;3 3.1619E-05 141.2 5 0.83699 1.045 25.458 5 Median 0.83699 1.045 25.458 5 0 Median NaN NaN NaN 0 0 Median 98757000 53070000 45687000 98757000 53070000 45687000 0 0 0 7857 1507 8030 28644;28645;28646;28647;28648 43233;43234;43235;43236;43237;43238;43239;43240;43241 43241 9 LQLELSK DARKTLDSVAKERARLQLELSKVREEFKEL SVAKERARLQLELSKVREEFKELKARNTKK R L Q S K V 0 0 0 0 0 1 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 7 0 829.49092 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519 P02545 102 108 LMNA Prelamin-A/C;Lamin-A/C yes no 2 0.003551 94.006 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67213000 0 67213000 46326000 0 46326000 20887000 0 20887000 7858 1229 8031 28649;28650;28651;28652 43242;43243;43244;43245 43244 4 LQLETEIEALK IHGLRKVIDDTNITRLQLETEIEALKEELL NITRLQLETEIEALKEELLFMKKNHEEEVK R L Q L K E 1 0 0 0 0 1 3 0 0 1 3 1 0 0 0 0 1 0 0 0 0 0 11 0 1285.7129 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__P05784 F8VZY9 197 207 KRT18 Keratin, type I cytoskeletal 18 no no 2 5.6262E-11 176.38 4 3 0.23196 0.30165 117.28 6 Median 0.22753 0.30145 3.0117 4 0 Linear 1.7897 2.8427 9.5394 2 0 Median 541550000 372590000 168960000 411370000 333240000 78123000 130190000 39352000 90835000 + 7859 252;954 8032 28653;28654;28655;28656;28657;28658;28659 43246;43247;43248;43249;43250;43251;43252;43253;43254;43255 43246 10 LQLETEIEALKEELLFMK IHGLRKVIDDTNITRLQLETEIEALKEELL ETEIEALKEELLFMKKNHEEEVKGLQAQIA R L Q M K K 1 0 0 0 0 1 5 0 0 1 5 2 1 1 0 0 1 0 0 0 0 0 18 1 2176.1701 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__P05784 F8VZY9 197 214 KRT18 Keratin, type I cytoskeletal 18 no no 3 3.1316E-06 71.781 3 0.16744 0.20653 47.689 2 Median 0.16744 0.20653 47.689 2 0 Median NaN NaN NaN 0 0 Median 74841000 69074000 5767300 74841000 69074000 5767300 0 0 0 + 7860 252;954 8033;8034 28660;28661;28662 43256;43257;43258;43259 43258 100 4 LQLLEDDK LGLVDIVKGTNSYYKLQLLEDDKENRYWIF GTNSYYKLQLLEDDKENRYWIFRSWGRVGT K L Q D K E 0 0 0 2 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 0 972.51278 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 572 579 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.00029951 121.62 4 2 1.0324 1.3315 37.235 6 Median 1.0819 1.3994 4.8129 4 0 Median 0.42305 0.67434 1.5113 2 0 Median 475430000 261400000 214030000 333180000 162750000 170430000 142250000 98651000 43603000 7861 107 8035 28663;28664;28665;28666;28667;28668 43260;43261;43262;43263;43264;43265;43266;43267;43268;43269 43264 10 LQLLSLVTK DGDLIAVSNLNDSDKLQLLSLVTKKKRFWC LNDSDKLQLLSLVTKKKRFWCWQRPKYQFL K L Q T K K 0 0 0 0 0 1 0 0 0 0 4 1 0 0 0 1 1 0 0 1 0 0 9 0 1013.6485 A8K410;A0A024RA58;O60443;A4FTY0 A8K410 31 39 DFNA5 Non-syndromic hearing impairment protein 5 yes no 2 0.00073821 90.657 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4481800 4481800 0 4481800 4481800 0 0 0 0 7862 237 8036 28669;28670;28671;28672 43270;43271;43272;43273 43273 4 LQLNGNLQLELAQVLAQERPK PSQQELPRLLSAACRLQLNGNLQLELAQVL LQLELAQVLAQERPKLPEDPLLSGLLDSPA R L Q P K L 2 1 2 0 0 4 2 1 0 0 6 1 0 0 1 0 0 0 0 1 0 0 21 1 2374.3332 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1188 1208 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 5.4445E-09 109.65 2 0.81629 1.0919 12.386 2 Median 0.81629 1.0919 12.386 2 0 Median NaN NaN NaN 0 0 Median 15516000 7612000 7904300 15516000 7612000 7904300 0 0 0 7863 486 8037 28673;28674 43274;43275;43276 43274 3 LQLPVWEYK NLPHTPRYYDILKKRLQLPVWEYKDRFTDI DILKKRLQLPVWEYKDRFTDILVRHQSFVL R L Q Y K D 0 0 0 0 0 1 1 0 0 0 2 1 0 0 1 0 0 1 1 1 0 0 9 0 1174.6386 O43143;B4E0S6 O43143 135 143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 0.034982 46.39 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2790200 2790200 0 0 0 0 2790200 2790200 0 7864 1180 8038 28675 43277 43277 1 LQLQEQLQAETELCAEAEELRAR LTEMETLQSQLMAEKLQLQEQLQAETELCA AETELCAEAEELRARLTAKKQELEEICHDL K L Q A R L 4 2 0 0 1 4 6 0 0 0 5 0 0 0 0 0 1 0 0 0 0 0 23 1 2727.3498 A0A024R1N1;P35579;Q86XU5;B4E3S1;A0A0U4BW16 A0A024R1N1 883 905 MYH9 Myosin-9 no no 3 1.3464E-17 89.668 3 1.0569 1.4074 10.96 3 Median 1.0569 1.4074 10.96 3 0 Median NaN NaN NaN 0 0 Median 34426000 17431000 16995000 34426000 17431000 16995000 0 0 0 7865 61;490 8039 28676;28677;28678 43278;43279;43280 43279 3 LQLQGLDLSSR KKQTEQLSLELEVARLQLQGLDLSSRSLLG EVARLQLQGLDLSSRSLLGIDTEDAIQGRN R L Q S R S 0 1 0 1 0 2 0 1 0 0 4 0 0 0 0 2 0 0 0 0 0 0 11 0 1228.6776 P49454 P49454 1739 1749 CENPF Centromere protein F yes yes 2 0.0068445 53.124 1 2 1.133 1.6004 0.098808 2 Median NaN NaN NaN 0 0 Median 1.133 1.6004 0.098808 2 0 Median 22218000 11560000 10659000 0 0 0 22218000 11560000 10659000 7866 1351 8040 28679;28680;28681 43281;43282;43283;43284 43282 4 LQLQNPPAIHGSGSGSCQ SMQQLDPSPARKLLKLQLQNPPAIHGSGSG QNPPAIHGSGSGSCQ_______________ K L Q C Q - 1 0 1 0 1 3 0 3 1 1 2 0 0 0 2 3 0 0 0 0 0 0 18 0 1849.8741 Q4G1A1;A8K3X3;Q9H410;Q5JW54 Q4G1A1 323 340 DSN1 Kinetochore-associated protein DSN1 homolog yes no 2 2.3628E-17 153.49 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4462300 0 0 4462300 0 0 0 0 0 7867 599 8041 28682;28683 43285;43286 43285 2 LQLSLADFR GSATNYITRNKARKKLQLSLADFRRLCILK NKARKKLQLSLADFRRLCILKGIYPHEPKH K L Q F R R 1 1 0 1 0 1 0 0 0 0 3 0 0 1 0 1 0 0 0 0 0 0 9 0 1061.5869 B5MCF9;B2RDF2;O00541 B5MCF9 27 35 PES1 Pescadillo homolog yes no 2 2.7677E-06 171.73 4 2 0.75344 1.0085 12.28 6 Median 0.79075 1.0645 6.6948 4 0 Median 0.5749 0.86817 11.511 2 0 Median 143360000 81557000 61801000 110020000 61303000 48722000 33333000 20254000 13080000 7868 735 8042 28684;28685;28686;28687;28688;28689 43287;43288;43289;43290;43291;43292;43293;43294;43295;43296;43297;43298 43290 12 LQLSLADFRR GSATNYITRNKARKKLQLSLADFRRLCILK KARKKLQLSLADFRRLCILKGIYPHEPKHK K L Q R R L 1 2 0 1 0 1 0 0 0 0 3 0 0 1 0 1 0 0 0 0 0 0 10 1 1217.6881 B5MCF9;B2RDF2;O00541 B5MCF9 27 36 PES1 Pescadillo homolog yes no 3 0.0044929 100.25 4 0.93085 1.2047 21.496 3 Median 0.93085 1.2047 21.496 3 0 Median NaN NaN NaN 0 0 Median 14809000 6815200 7993500 14809000 6815200 7993500 0 0 0 7869 735 8043 28690;28691;28692;28693 43299;43300;43301;43302;43303;43304 43299 6 LQLVMK AAKKTKKSLESINSRLQLVMKSGKYVLGYK KSLESINSRLQLVMKSGKYVLGYKQTLKMI R L Q M K S 0 0 0 0 0 1 0 0 0 0 2 1 1 0 0 0 0 0 0 1 0 0 6 0 730.44113 E5RI99;A0A024R9D3;P62888;E5RJH3;A0A0C4DH44 E5RI99 18 23 RPL30 60S ribosomal protein L30 yes no 2 0.036701 80.999 1 0.77358 0.94706 NaN 1 Median 0.77358 0.94706 NaN 1 0 Median NaN NaN NaN 0 0 Median 19450000 10458000 8992700 19450000 10458000 8992700 0 0 0 7870 219 8044 28694 43305 43305 1 LQMEAPHIIVGTPGR HACIGGTNVRAEVQKLQMEAPHIIVGTPGR LQMEAPHIIVGTPGRVFDMLNRRYLSPKYI K L Q G R V 1 1 0 0 0 1 1 2 1 2 1 0 1 0 2 0 1 0 0 1 0 0 15 0 1617.8661 A8K7F6;P60842;A8K088;J3KT12;J3KTB5;Q59F68;J3QS69;J3QR64;J3QL43;J3QLN6;J3QKZ9;B4E047;J3KS25;J3KSZ0 A8K7F6 147 161 EIF4A1 Eukaryotic initiation factor 4A-I yes no 3 3.9386E-06 63.134 2 1 0.29458 0.40478 136.91 3 Median 0.29311 0.40196 0.98908 2 0 Median 2.7823 4.3055 NaN 1 0 Median 39545000 15315000 24230000 13724000 8746200 4978000 25821000 6568600 19252000 7871 634 8045;8046 28695;28696;28697 43306;43307;43308;43309 43307 216 4 LQNALNEQR DLALEKAARAELEMRLQNALNEQRVEFATL AELEMRLQNALNEQRVEFATLQEALAHALT R L Q Q R V 1 1 2 0 0 2 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1084.5625 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q7Z757;Q9UPG3;Q4LE64;Q14980 Q4LE64 1034 1042 NUMA1;NuMA;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 1.3277E-08 140.5 2 1 0.65246 0.88405 34.026 3 Median 0.67724 0.91365 4.6572 2 0 Median 0.34399 0.5082 NaN 1 0 Median 33501000 21181000 12321000 19371000 10855000 8516500 14130000 10326000 3804400 7872 148;1499 8047 28698;28699;28700 43310;43311;43312;43313;43314 43310 5 LQNALNEQRVEFATLQEALAHALTEK DLALEKAARAELEMRLQNALNEQRVEFATL FATLQEALAHALTEKEGKDQELAKLRGLEA R L Q E K E 5 1 2 0 0 3 4 0 1 0 5 1 0 1 0 0 2 0 0 1 0 0 26 1 2936.5356 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q7Z757;Q9UPG3;Q4LE64;Q14980 Q4LE64 1034 1059 NUMA1;NuMA;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 4 0.01682 47.208 3 0.69466 0.92395 9.9043 2 Median 0.69466 0.92395 9.9043 2 0 Median NaN NaN NaN 0 0 Median 40274000 26463000 13812000 40274000 26463000 13812000 0 0 0 7873 148;1499 8048 28701;28702;28703 43315;43316;43317;43318 43318 4 LQNELDNVSTLLEEAEK EGDRLRVELAEKASKLQNELDNVSTLLEEA NELDNVSTLLEEAEKKGIKFAKDAASLESQ K L Q E K K 1 0 2 1 0 1 4 0 0 0 4 1 0 0 0 1 1 0 0 1 0 0 17 0 1943.9688 P35580 P35580 1285 1301 MYH10 Myosin-10 yes yes 2 0.0010495 84.759 1 0.46626 0.58174 NaN 1 Median 0.46626 0.58174 NaN 1 0 Median NaN NaN NaN 0 0 Median 1155600 943400 212230 1155600 943400 212230 0 0 0 7874 1320 8049 28704 43319;43320 43319 2 LQNIIDNQK RVELECETIKQENTRLQNIIDNQKYSVADI KQENTRLQNIIDNQKYSVADIERINHERNE R L Q Q K Y 0 0 2 1 0 2 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 9 0 1084.5877 A8K031;O14777;Q05DQ6 A8K031 352 360 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 0.00051966 114.5 1 2 0.78799 1.1882 0.57517 2 Median NaN NaN NaN 0 0 Median 0.78799 1.1882 0.57517 2 0 Median 25557000 13452000 12106000 1529600 0 1529600 24028000 13452000 10576000 7875 574 8050 28705;28706;28707 43321;43322;43323 43322 3 LQNSASATALVSR TTPRGVLHTFSPSPKLQNSASATALVSRTG PKLQNSASATALVSRTGRHSERTVSAGKGS K L Q S R T 3 1 1 0 0 1 0 0 0 0 2 0 0 0 0 3 1 0 0 1 0 0 13 0 1316.7048 A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7;B4E0Q6 A0A024R7K7 551 563 GATAD2A Transcriptional repressor p66-alpha yes no 2 7.3799E-06 158.56 3 0.74687 0.9944 2.9159 3 Median 0.74687 0.9944 2.9159 3 0 Median NaN NaN NaN 0 0 Median 43217000 24105000 19112000 43217000 24105000 19112000 0 0 0 7876 179 8051 28708;28709;28710 43324;43325;43326;43327;43328 43326 5 LQNVQIALDYLR GDSLPREKGRMRFHKLQNVQIALDYLRHRQ FHKLQNVQIALDYLRHRQVKLVNIRNDDIA K L Q L R H 1 1 1 1 0 2 0 0 0 1 3 0 0 0 0 0 0 0 1 1 0 0 12 0 1444.8038 Q15149;E9PMV1;E9PKG0;E9PQ28;E9PIA2 Q15149 237 248 PLEC Plectin yes no 2 1.1377E-15 145.25 3 0.94768 1.2751 1.0931 2 Median 0.94768 1.2751 1.0931 2 0 Median NaN NaN NaN 0 0 Median 74900000 34395000 40504000 74900000 34395000 40504000 0 0 0 7877 1507 8052 28711;28712;28713 43329;43330;43331;43332 43331 4 LQPEEADVPAYPK ANSGELDKMDEKRTRLQPEEADVPAYPKVA TRLQPEEADVPAYPKVATVPQSEKKPSKYP R L Q P K V 2 0 0 1 0 1 2 0 0 0 1 1 0 0 3 0 0 0 1 1 0 0 13 0 1455.7246 Q9BTC0 Q9BTC0 1218 1230 DIDO1 Death-inducer obliterator 1 yes yes 2 0.0015396 94.616 2 1.0042 1.2833 3.1967 2 Median 1.0042 1.2833 3.1967 2 0 Median NaN NaN NaN 0 0 Median 7699100 3717000 3982100 7699100 3717000 3982100 0 0 0 7878 1713 8053 28714;28715 43333;43334 43333 2 LQPFATEADVEEALR LEAIVRIAEALSKMKLQPFATEADVEEALR LQPFATEADVEEALRLFQVSTLDAALSGTL K L Q L R L 3 1 0 1 0 1 3 0 0 0 2 0 0 1 1 0 1 0 0 1 0 0 15 0 1687.8417 Q53FG5;B1AHB0;A8K521;P33992;B1AHB1;Q59F49 Q53FG5 628 642 MCM5 DNA helicase;DNA replication licensing factor MCM5 yes no 2 2.5832E-06 120.55 4 0.35455 0.48897 13.597 2 Median 0.35455 0.48897 13.597 2 0 Median NaN NaN NaN 0 0 Median 19750000 16113000 3637200 19750000 16113000 3637200 0 0 0 7879 612 8054 28716;28717;28718;28719 43335;43336;43337;43338;43339;43340 43337 6 LQPHPQLSPEIR DLATDQKEALLELLRLQPHPQLSPEIRREL LLRLQPHPQLSPEIRRELQSAVPRDVEDVP R L Q I R R 0 1 0 0 0 2 1 0 1 1 2 0 0 0 3 1 0 0 0 0 0 0 12 0 1413.7728 Q13895 Q13895 407 418 BYSL Bystin yes yes 3 0.00065416 48.532 2 1.0064 1.3546 4.8122 2 Median 1.0064 1.3546 4.8122 2 0 Median NaN NaN NaN 0 0 Median 24130000 10780000 13350000 24130000 10780000 13350000 0 0 0 7880 1480 8055 28720;28721 43341;43342 43342 2 LQPPFSPHPTLLSSTPKPPGTSEPR HRARAVSPAPQSSSRLQPPFSPHPTLLSST LLSSTPKPPGTSEPRSCSSISTALPQVNED R L Q P R S 0 1 0 0 0 1 1 1 1 0 3 1 0 1 8 4 3 0 0 0 0 0 25 1 2667.4021 A0A024R8V6;Q9P275;A0A075B784 A0A024R8V6 751 775 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 4 0.016166 17.794 2 0.77769 1.2122 17.602 2 Median NaN NaN NaN 0 0 Median 0.77769 1.2122 17.602 2 0 Median 22708000 10823000 11885000 0 0 0 22708000 10823000 11885000 7881 205 8056 28722;28723 43343;43344;43345;43346 43346 4 LQQELDDLLVDLDHQR EKVAAYDKLEKTKTRLQQELDDLLVDLDHQ QQELDDLLVDLDHQRQSACNLEKKQKKFDQ R L Q Q R Q 0 1 0 4 0 3 1 0 1 0 5 0 0 0 0 0 0 0 0 1 0 0 16 0 1948.9854 A0A024R1N1;P35579;A0A0U4BW16 A0A024R1N1 1418 1433 MYH9 Myosin-9 no no 2;3 5.4161E-30 156.72 7 1 0.97698 1.3414 60.797 7 Median 0.96536 1.3195 31.924 6 0 Median 3.8213 6.2031 NaN 1 0 Median 1164000000 553500000 610490000 1018600000 521820000 496800000 145360000 31677000 113690000 7882 61;490 8057 28724;28725;28726;28727;28728;28729;28730;28731 43347;43348;43349;43350;43351;43352;43353;43354;43355;43356;43357;43358;43359 43353 13 LQQEQDLRR QANQEISPLDSMIQRLQQEQDLRRSGEAVI DSMIQRLQQEQDLRRSGEAVISNTSRLSRG R L Q R R S 0 2 0 1 0 3 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 1 1184.6262 Q8WWQ0 Q8WWQ0 650 658 PHIP PH-interacting protein yes yes 2;3 6.7713E-05 117.89 2 1 0.80569 1.0836 5.8946 3 Median 0.84142 1.1303 5.9692 2 0 Median 0.71978 1.0525 NaN 1 0 Median 83454000 44902000 38552000 68089000 37797000 30292000 15366000 7105200 8260300 7883 1668 8058 28732;28733;28734 43360;43361;43362;43363;43364 43360 5 LQQGAGLESPQGQPEPGAASPQR GSPERPPKTSPGSPRLQQGAGLESPQGQPE SPQGQPEPGAASPQRQQDLHLESPQRQPEY R L Q Q R Q 3 1 0 0 0 5 2 4 0 0 2 0 0 0 4 2 0 0 0 0 0 0 23 0 2302.1302 Q9H6F5;Q6ZW18 Q9H6F5 72 94 CCDC86 Coiled-coil domain-containing protein 86 yes no 2 4.5174E-08 117 3 1 0.4 0.53649 48.669 3 Median 0.55247 0.76304 49.816 2 0 Median 0.2923 0.4265 NaN 1 0 Median 16424000 13079000 3344700 10050000 8596200 1454000 6373800 4483100 1890700 7884 1737 8059 28735;28736;28737;28738 43365;43366;43367;43368;43369;43370;43371;43372 43369 8 LQQLFIELTLK HNSFEQFCINYCNEKLQQLFIELTLKSEQE CNEKLQQLFIELTLKSEQEEYEAEGIAWEP K L Q L K S 0 0 0 0 0 2 1 0 0 1 4 1 0 1 0 0 1 0 0 0 0 0 11 0 1344.8017 F5H6E2;B7Z3E5;O00159;D3DTH7;B7Z9C0 F5H6E2 421 431 MYO1C Unconventional myosin-Ic yes no 2 0.002227 117.02 4 0.5659 0.70804 13.287 2 Median 0.5659 0.70804 13.287 2 0 Median NaN NaN NaN 0 0 Median 42092000 27113000 14979000 42092000 27113000 14979000 0 0 0 7885 905 8060 28739;28740;28741;28742 43373;43374;43375;43376;43377 43375 5 LQQLFNHTMFILEQEEYQR LNSFEQLCINYTNEKLQQLFNHTMFILEQE FNHTMFILEQEEYQREGIEWNFIDFGLDLQ K L Q Q R E 0 1 1 0 0 4 3 0 1 1 3 0 1 2 0 0 1 0 1 0 0 0 19 0 2466.2002 A0A024R1N1;P35579;Q86XU5;B4E3S1;A0A0U4BW16;P35580 A0A024R1N1 476 494 MYH9;MYH10 Myosin-9;Myosin-10 no no 3 1.5385E-59 206.63 4 1 1.0006 1.3286 63.341 4 Median 0.95844 1.2681 5.8689 3 0 Median 3.212 4.6033 NaN 1 0 Median 54515000 21864000 32651000 43760000 19744000 24016000 10755000 2119800 8635100 7886 61;490;1320 8061;8062 28743;28744;28745;28746;28747 43378;43379;43380;43381;43382 43379 22 4 LQQLFR EPMVARKQKLADSLRLQQLFRDVEDEETWI KQKLADSLRLQQLFRDVEDEETWIREKEPI R L Q F R D 0 1 0 0 0 2 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 6 0 803.46537 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 786 791 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.031007 92.279 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6248500 6248500 0 6248500 6248500 0 0 0 0 7887 1476 8063 28748 43383 43383 1 LQQLGEAHQAETEVLRR ELEEERAGRKGLEARLQQLGEAHQAETEVL QLGEAHQAETEVLRRELAEAMAAQHTAESE R L Q R R E 2 2 0 0 0 3 3 1 1 0 3 0 0 0 0 0 1 0 0 1 0 0 17 1 1977.0392 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;F5H4J1;A8K394;Q4LE64;Q14980 Q4LE64 771 787 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3;4 0.01096 47.622 3 1 0.67505 0.92249 39.197 4 Median 0.71765 0.97141 6.1006 3 0 Median 0.29682 0.43191 NaN 1 0 Median 78813000 44032000 34782000 65282000 34212000 31069000 13531000 9819100 3712400 7888 148;1499;590 8064 28749;28750;28751;28752 43384;43385;43386;43387 43384 3 LQQLPADFGR CGLTHLVKLDLSKNKLQQLPADFGRLVNLQ LSKNKLQQLPADFGRLVNLQHLDLLNNKLV K L Q G R L 1 1 0 1 0 2 0 1 0 0 2 0 0 1 1 0 0 0 0 0 0 0 10 0 1143.6037 Q96AG4 Q96AG4 74 83 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2 1.4932E-21 161.92 4 2 0.70847 1.0632 43.965 4 Median 0.52825 0.72541 2.5639 2 0 Median 0.9602 1.5524 2.0337 2 0 Median 300340000 194550000 105790000 187950000 138370000 49582000 112390000 56187000 56203000 7889 1681 8065 28753;28754;28755;28756;28757;28758 43388;43389;43390;43391;43392;43393;43394;43395 43393 8 LQQLPK L Q P K 0 0 0 0 0 2 0 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 6 0 725.44357 REV__Q8N3X5 yes no 2 0.043035 77.906 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 7890 1853 8066 28759 43396 43396 1 LQQQAALSPTTAPAVSSVSK AFVKALQQEQEIEQRLQQQAALSPTTAPAV ALSPTTAPAVSSVSKQETIMRHHTLRQAPQ R L Q S K Q 4 0 0 0 0 3 0 0 0 0 2 1 0 0 2 4 2 0 0 2 0 0 20 0 1983.0637 A0A0U1RRM1;Q8WXI9;B3KSZ4;A0A0U1RR30 A0A0U1RRM1 463 482 GATAD2B Transcriptional repressor p66-beta yes no 2 9.5474E-07 118.52 4 1 1.2448 1.7258 78.691 3 Plateau 0.6724 0.86336 3.222 2 0 Median 2.2811 3.3719 NaN 1 0 Median 16240000 9045600 7194000 10113000 7135900 2977400 6126200 1909700 4216600 7891 488 8067 28760;28761;28762;28763;28764 43397;43398;43399;43400;43401;43402;43403;43404 43403 8 LQQQLTQAQETLK QGHLKRASNESTRQRLQQQLTQAQETLKSL QRLQQQLTQAQETLKSLGALKK________ R L Q L K S 1 0 0 0 0 5 1 0 0 0 3 1 0 0 0 0 2 0 0 0 0 0 13 0 1527.8257 B4DY59;E9PF19;A0A0S2Z5F3;Q8N2L6;B2RB52;Q9Y4P3;B4DY50 B4DY59 299 311 TBL2 Transducin beta-like protein 2 yes no 2 1.5457E-20 195.83 4 2 1.0595 1.6047 24.211 3 Plateau 0.82609 1.0482 NaN 1 0 Median 1.0534 1.594 0.94323 2 0 Median 49050000 28282000 20768000 15236000 12337000 2899200 33814000 15945000 17869000 7892 480 8068 28765;28766;28767;28768;28769;28770 43405;43406;43407;43408;43409;43410;43411;43412;43413 43406 9 LQQQQAQQPLQQQQQR IFVKSLEDPYSQQIRLQQQQAQQPLQQQQQ QQQQAQQPLQQQQQRNAYTRF_________ R L Q Q R N 1 1 0 0 0 11 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 16 0 1977.014 A0A087WXK3;Q9NVH2 A0A087WXK3 131 146 INTS7 Integrator complex subunit 7 yes no 2 0.00045071 100.69 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7893 358 8069 28771 43414 43414 1 LQQQQRPEDAEDGAEGGGK ______________________________ QRPEDAEDGAEGGGKRGEAGWEGGYPEIVK R L Q G K R 2 1 0 2 0 4 3 4 0 0 1 1 0 0 1 0 0 0 0 0 0 0 19 1 2011.9195 Q08J23;A0A140T9Y7 Q08J23 10 28 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 3 1.4364E-24 121.27 4 1 0.42017 0.53172 103.02 5 Median 0.40499 0.51776 11.845 4 0 Median 3.6825 5.3327 NaN 1 0 Median 17162000 10326000 6836200 13868000 9631500 4236600 3294300 694700 2599600 7894 1451 8070 28772;28773;28774;28775;28776 43415;43416;43417;43418;43419;43420;43421;43422;43423 43419 9 LQQSHPLSATQIQVK ALEDKVKALCAEADRLQQSHPLSATQIQVK LQQSHPLSATQIQVKREELITNWEQIRTLA R L Q V K R 1 0 0 0 0 4 0 0 1 1 2 1 0 0 1 2 1 0 0 1 0 0 15 0 1676.921 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 321 335 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 3 4.7045E-08 134.06 2 0.95848 1.2189 5.9918 2 Median 0.95848 1.2189 5.9918 2 0 Median NaN NaN NaN 0 0 Median 21415000 11527000 9888200 21415000 11527000 9888200 0 0 0 7895 1476 8071 28777;28778 43424;43425;43426 43424 3 LQQTYAALNSK NQRRYRQRRKAELVKLQQTYAALNSKATFY ELVKLQQTYAALNSKATFYGEQVDYYKSYI K L Q S K A 2 0 1 0 0 2 0 0 0 0 2 1 0 0 0 1 1 0 1 0 0 0 11 0 1235.651 A4QPB0;A0A024RC65;P46940;H0YLE8;B4E2M0;B4DNP4 A4QPB0 1506 1516 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.026549 50.108 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7896 287 8072 28779 43427 43427 1 LQQYYIFIPSK PVKCAVSSKYQTVEKLQQYYIFIPSKFKDT TVEKLQQYYIFIPSKFKDTYLVYILNELAG K L Q S K F 0 0 0 0 0 2 0 0 0 2 1 1 0 1 1 1 0 0 2 0 0 0 11 0 1398.7547 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;F5H1N9 Q53GJ1 231 241 hCG_27698;DDX47;E4-DBP Probable ATP-dependent RNA helicase DDX47 yes no 2 2.642E-06 136.96 5 0.8943 1.1145 10.743 4 Median 0.8943 1.1145 10.743 4 0 Median NaN NaN NaN 0 0 Median 101700000 58303000 43398000 101700000 58303000 43398000 0 0 0 7897 249 8073 28780;28781;28782;28783;28784 43428;43429;43430;43431;43432;43433;43434 43433 7 LQSDDILPLGK NHYPVESSWIAPELRLQSDDILPLGKDSGP PELRLQSDDILPLGKDSGPLSDPITGKPYV R L Q G K D 0 0 0 2 0 1 0 1 0 1 3 1 0 0 1 1 0 0 0 0 0 0 11 0 1197.6605 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 350 360 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.0066734 93.598 2 2 0.91997 1.2972 8.8052 3 Median 0.91997 1.1726 NaN 1 0 Median 0.90252 1.3464 5.2606 2 0 Median 23987000 12487000 11500000 6355200 3462800 2892400 17631000 9023800 8607600 7898 93 8074 28785;28786;28787;28788 43435;43436;43437;43438 43437 4 LQSDFAALLTGPLQR EYLNAYSGRKYQADRLQSDFAALLTGPLQR LQSDFAALLTGPLQRNPLCNLLSFTYKLDP R L Q Q R N 2 1 0 1 0 2 0 1 0 0 4 0 0 1 1 1 1 0 0 0 0 0 15 0 1628.8886 Q9BU64 Q9BU64 197 211 CENPO Centromere protein O yes yes 2 2.2784E-08 113.52 4 2 0.65119 0.89346 5.4728 6 Median 0.67273 0.89346 6.8849 4 0 Median 0.63843 0.89319 2.6234 2 0 Median 38311000 22807000 15504000 23488000 13796000 9691800 14823000 9011400 5811800 7899 1714 8075 28789;28790;28791;28792;28793;28794 43439;43440;43441;43442;43443;43444;43445;43446 43442 8 LQSEDSAKTEEVDEEK KFLQGFMAPKQKRRKLQSEDSAKTEEVDEE QSEDSAKTEEVDEEKKMVEEAKVASALEKW K L Q E K K 1 0 0 2 0 1 5 0 0 0 1 2 0 0 0 2 1 0 0 1 0 0 16 1 1835.8272 Q9UIG0 Q9UIG0 1122 1137 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2;3 4.8865E-31 184.51 5 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58790000 0 58790000 53385000 0 53385000 5404700 0 5404700 7900 1786 8076 28795;28796;28797;28798;28799;28800 43447;43448;43449;43450;43451;43452 43449 6 LQSEDSAKTEEVDEEKK KFLQGFMAPKQKRRKLQSEDSAKTEEVDEE SEDSAKTEEVDEEKKMVEEAKVASALEKWK K L Q K K M 1 0 0 2 0 1 5 0 0 0 1 3 0 0 0 2 1 0 0 1 0 0 17 2 1963.9222 Q9UIG0 Q9UIG0 1122 1138 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 3.6798E-07 135.86 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10347000 0 10347000 10347000 0 10347000 0 0 0 7901 1786 8077 28801;28802;28803 43453;43454;43455 43455 3 LQSGICHLFR RVIDLRTSTSQAVFRLQSGICHLFRETLIN QAVFRLQSGICHLFRETLINKGFVEIQTPK R L Q F R E 0 1 0 0 1 1 0 1 1 1 2 0 0 1 0 1 0 0 0 0 0 0 10 0 1229.6339 D3DP78;A0A140VJW5;P14868;Q53T60;C9J7S3;C9JLC1 D3DP78 165 174 DARS Aspartate--tRNA ligase, cytoplasmic yes no 3 0.0055345 35.652 2 0.47149 0.64482 6.4755 2 Median 0.47149 0.64482 6.4755 2 0 Median NaN NaN NaN 0 0 Median 12360000 8302500 4057200 12360000 8302500 4057200 0 0 0 7902 504 8078 28804;28805 43456;43457;43458 43456 3 LQSLTENLTK DKSRSLNESKIEIERLQSLTENLTKEHLML IEIERLQSLTENLTKEHLMLEEELRNLRLE R L Q T K E 0 0 1 0 0 1 1 0 0 0 3 1 0 0 0 1 2 0 0 0 0 0 10 0 1145.6292 P15924 P15924 1706 1715 DSP Desmoplakin yes yes 2 0.0041056 77.192 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3066600 3066600 0 3066600 3066600 0 0 0 0 7903 1270 8079 28806 43459 43459 1 LQSSDGEIFEVDVEIAK ______________________________ SSDGEIFEVDVEIAKQSVTIKTMLEDLGMD K L Q A K Q 1 0 0 2 0 1 3 1 0 2 1 1 0 1 0 2 0 0 0 2 0 0 17 0 1877.9258 E5RJR5;P63208;E5RHM3;E5RGM4;E5RI56;E5RGM3;E7ERH2;F8W8N3 E5RJR5 6 22 SKP1 S-phase kinase-associated protein 1 yes no 2 7.5813E-07 101.75 3 0.6129 0.7619 NaN 1 Median 0.6129 0.7619 NaN 1 0 Median NaN NaN NaN 0 0 Median 13385000 9256300 4128600 13385000 9256300 4128600 0 0 0 7904 1007 8080 28807;28808;28809 43460;43461;43462;43463 43462 4 LQSSLESEVSVLASK AAMTDAMVPRSSYEKLQSSLESEVSVLASK LQSSLESEVSVLASKLKESVKEKEKVHSEV K L Q S K L 1 0 0 0 0 1 2 0 0 0 3 1 0 0 0 5 0 0 0 2 0 0 15 0 1575.8356 Q9P0K7;B4DNL3;B3KMZ9 Q9P0K7 792 806 RAI14 Ankycorbin yes no 2 0.0002957 91.62 4 1.3185 1.6378 NaN 1 Median 1.3185 1.6378 NaN 1 0 Median NaN NaN NaN 0 0 Median 5631100 4701500 929580 5631100 4701500 929580 0 0 0 7905 1777 8081 28810;28811;28812;28813 43464;43465;43466;43467;43468 43466 5 LQSSQEPEAPPPR TGGRRVSKARRRAAKLQSSQEPEAPPPRDV AKLQSSQEPEAPPPRDVALLQGRANDLVKY K L Q P R D 1 1 0 0 0 2 2 0 0 0 1 0 0 0 4 2 0 0 0 0 0 0 13 0 1434.7103 Q5H907;Q5H909;A0A024R9Y7;Q9UNF1;B4DWM5;B4DX55 Q5H907 177 189 MAGED2 Melanoma-associated antigen D2 yes no 2 0.00097415 62.303 2 1 1.9774 2.6031 109.04 2 Median 0.90593 1.2041 NaN 1 0 Median 4.3161 5.6278 NaN 1 0 Median 7531200 3668500 3862700 4201400 3008900 1192400 3329800 659540 2670300 7906 234 8082 28814;28815;28816 43469;43470;43471;43472 43471 4 LQTASDESYKDPTNIQSK FSRDVDEIEAWISEKLQTASDESYKDPTNI ASDESYKDPTNIQSKHQKHQAFEAELHANA K L Q S K H 1 0 1 2 0 2 1 0 0 1 1 2 0 0 1 3 2 0 1 0 0 0 18 1 2023.9698 Q13813;A0A024R889;Q9UG16 Q13813 1571 1588 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 3 9.1137E-24 118.48 4 0.79282 0.97697 10.043 4 Median 0.79282 0.97697 10.043 4 0 Median NaN NaN NaN 0 0 Median 81828000 45588000 36240000 81828000 45588000 36240000 0 0 0 7907 1476 8083 28817;28818;28819;28820 43473;43474;43475;43476;43477;43478;43479;43480 43480 8 LQTFLSK AKKENTAAENGLTVRLQTFLSKRPMPLSAR AENGLTVRLQTFLSKRPMPLSARGNSRLNI R L Q S K R 0 0 0 0 0 1 0 0 0 0 2 1 0 1 0 1 1 0 0 0 0 0 7 0 835.48035 Q6AHZ7;Q12789;Q6AWA4;H3BU55 Q6AHZ7 1156 1162 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.024053 70.69 1 1 0.95059 1.2346 1.1926 2 Median 1.019 1.245 NaN 1 0 Median 0.88681 1.2242 NaN 1 0 Median 25332000 12634000 12698000 19921000 9880100 10041000 5410700 2753900 2656800 7908 1457 8084 28821;28822 43481;43482 43481 2 LQTLAVLLR TQFPDLRLIQYDCGKLQTLAVLLRQLKAEG QYDCGKLQTLAVLLRQLKAEGHRVLIFTQM K L Q L R Q 1 1 0 0 0 1 0 0 0 0 4 0 0 0 0 0 1 0 0 1 0 0 9 0 1025.6597 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2 A0A0A0MS59 1786 1794 SRCAP Helicase SRCAP yes no 2 4.252E-05 132.57 3 0.487 0.67386 19.421 2 Median 0.487 0.67386 19.421 2 0 Median NaN NaN NaN 0 0 Median 8203700 6393200 1810500 8203700 6393200 1810500 0 0 0 7909 394 8085 28823;28824;28825 43483;43484;43485 43484 3 LQTLVSEQPNK ILNDQNKALKSEVQKLQTLVSEQPNKDVVE EVQKLQTLVSEQPNKDVVEQMEKCIQEKDE K L Q N K D 0 0 1 0 0 2 1 0 0 0 2 1 0 0 1 1 1 0 0 1 0 0 11 0 1255.6772 A0A024R663;Q86UP2 A0A024R663 717 727 KTN1 Kinectin yes no 2 0.0017174 93.649 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9123700 9123700 0 2816300 2816300 0 6307300 6307300 0 7910 155 8086 28826;28827 43486;43487;43488 43487 3 LQTMKEELDFQK QLQDEMLRRVDAENRLQTMKEELDFQKNIY ENRLQTMKEELDFQKNIYSEELRETKRRHE R L Q Q K N 0 0 0 1 0 2 2 0 0 0 2 2 1 1 0 0 1 0 0 0 0 0 12 1 1508.7545 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;Q5TCI8;H0YAB0 P02545 197 208 LMNA Prelamin-A/C;Lamin-A/C yes no 3 0.00063515 61.11 2 1.4451 2.2869 1.1513 2 Median NaN NaN NaN 0 0 Median 1.4451 2.2869 1.1513 2 0 Median 23018000 9753700 13265000 0 0 0 23018000 9753700 13265000 7911 1229 8087 28828;28829 43489;43490;43491 43490 470 3 LQTPNTFPK EAAEEAETPQAKKIKLQTPNTFPKRKKGEK QAKKIKLQTPNTFPKRKKGEKRASSPFRRV K L Q P K R 0 0 1 0 0 1 0 0 0 0 1 1 0 1 2 0 2 0 0 0 0 0 9 0 1044.5604 B2RAU8;A0A0A0MRM9;Q14978;Q96J17 B2RAU8 605 613 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 2 0.0020487 87.696 1 2 0.94429 1.1707 23.279 3 Plateau 0.94429 1.1707 NaN 1 0 Median 0.50781 0.78226 0.0028178 2 0 Median 80800000 50914000 29886000 29989000 17283000 12706000 50812000 33631000 17180000 7912 388 8088 28830;28831;28832 43492;43493;43494;43495;43496;43497 43494 6 LQTQVFK DYILGLKIEDFLERRLQTQVFKLGLAKSIH IEDFLERRLQTQVFKLGLAKSIHHARVLIR R L Q F K L 0 0 0 0 0 2 0 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 7 0 862.49125 A0A024R4M0;P46781;B5MCT8;C9JM19;B7Z732;A5D904 A0A024R4M0 110 116 RPS9 40S ribosomal protein S9 yes no 1;2 0.0043554 120.46 5 2 0.8175 1.0693 7.6357 4 Median 0.8175 1.0693 7.6357 4 0 Median NaN NaN NaN 0 0 Median 663450000 383250000 280200000 614560000 334360000 280200000 48886000 48886000 0 7913 124 8089 28833;28834;28835;28836;28837;28838;28839 43498;43499;43500;43501;43502;43503;43504;43505;43506;43507 43506 10 LQTSEAALSSSQAEVASLR ERRGLMSQLEEKERRLQTSEAALSSSQAEV EAALSSSQAEVASLRQETVAQAALLTEREE R L Q L R Q 4 1 0 0 0 2 2 0 0 0 3 0 0 0 0 5 1 0 0 1 0 0 19 0 1946.9909 A0A024RCS7;Q9BW19;B4DMA8 A0A024RCS7 255 273 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 1.2026E-09 90.444 2 1 0.761 1.0645 NaN 1 Median 0.761 1.0645 NaN 1 0 Median NaN NaN NaN 0 0 Median 12557000 1215000 11342000 4236600 1215000 3021600 8320300 0 8320300 7914 303 8090 28840;28841;28842 43508;43509;43510 43509 3 LQTSEAALSSSQAEVASLRQETVAQAALLTEREER ERRGLMSQLEEKERRLQTSEAALSSSQAEV ETVAQAALLTEREERLHGLEMERRRLHNQL R L Q E R L 7 3 0 0 0 4 6 0 0 0 5 0 0 0 0 5 3 0 0 2 0 0 35 2 3771.9239 A0A024RCS7;Q9BW19;B4DMA8 A0A024RCS7 255 289 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 4 0.0064337 18.498 1 0.51514 0.65106 NaN 1 Median 0.51514 0.65106 NaN 1 0 Median NaN NaN NaN 0 0 Median 4380000 2539900 1840100 4380000 2539900 1840100 0 0 0 7915 303 8091 28843 43511 43511 1 LQTSLTCNSMVLFDHVGCLK KLAEAERVGLHKVFKLQTSLTCNSMVLFDH TCNSMVLFDHVGCLKKYDTVLDILRDFFEL K L Q L K K 0 0 1 1 2 1 0 1 1 0 4 1 1 1 0 2 2 0 0 2 0 0 20 0 2322.117 P11388 P11388 991 1010 TOP2A DNA topoisomerase 2-alpha yes yes 3 5.2518E-20 147.49 8 1 0.93295 1.1658 31.793 6 Median 0.93303 1.1778 9.9796 5 0 Median 0.35674 0.57638 NaN 1 0 Median 215960000 121120000 94835000 173590000 89231000 84356000 42372000 31893000 10479000 7916 1256 8092;8093 28844;28845;28846;28847;28848;28849;28850;28851;28852 43512;43513;43514;43515;43516;43517;43518;43519;43520;43521 43512 514 9 LQTSSVLVSGLR YSRQLYVLGHEAMKRLQTSSVLVSGLRGLG MKRLQTSSVLVSGLRGLGVEIAKNIILGGV R L Q L R G 0 1 0 0 0 1 0 1 0 0 3 0 0 0 0 3 1 0 0 2 0 0 12 0 1258.7245 A0A024R1A3;P22314;Q5JRR9;Q5JRS0;Q5JRS1;Q5JRS3;Q5JRS2 A0A024R1A3 70 81 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 0.0030521 62.303 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7917 55 8094 28853 43522 43522 1 LQVDALIDTIKK GMAAVKKKSLCIQMKLQVDALIDTIKKSKL QMKLQVDALIDTIKKSKLHFVHCFLPVAEG K L Q K K S 1 0 0 2 0 1 0 0 0 2 2 2 0 0 0 0 1 0 0 1 0 0 12 1 1355.8024 A0A0D9SFK2;A0A024QZ63;Q92614;B4DYM1;B4E0T8 A0A0D9SFK2 1026 1037 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 3 0.019514 27.34 1 0.5054 0.61478 NaN 1 Median 0.5054 0.61478 NaN 1 0 Median NaN NaN NaN 0 0 Median 6363800 3759200 2604500 6363800 3759200 2604500 0 0 0 7918 6 8095 28854 43523 43523 1 LQVEELLK RLRETEILFHSSLLRLQVEELLKEVRLSEK FHSSLLRLQVEELLKEVRLSEKKKDRIDAF R L Q L K E 0 0 0 0 0 1 2 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 8 0 970.5699 Q9H6R4;A0A0A0MRW6;B4DF80 Q9H6R4 86 93 NOL6 Nucleolar protein 6 yes no 2 2.0181E-06 157.33 4 1 1.2415 1.5644 19.765 2 Median 1.2415 1.5644 19.765 2 0 Median NaN NaN NaN 0 0 Median 91063000 46342000 44721000 91063000 46342000 44721000 0 0 0 7919 1738 8096 28855;28856;28857;28858;28859 43524;43525;43526;43527;43528;43529;43530 43524 7 LQVELDNVTGLLSQSDSK EGERVRTELADKVTKLQVELDNVTGLLSQS ELDNVTGLLSQSDSKSSKLTKDFSALESQL K L Q S K S 0 0 1 2 0 2 1 1 0 0 4 1 0 0 0 3 1 0 0 2 0 0 18 0 1945.0004 A0A024R1N1;P35579;Q86XU5;A0A0U4BW16 A0A024R1N1 1278 1295 MYH9 Myosin-9 no no 2 1.6703E-118 263.15 5 1 1.0084 1.3329 76.034 5 Median 1.0002 1.3191 7.1232 4 0 Median 4.3347 6.9725 NaN 1 0 Median 813680000 367520000 446160000 728370000 350160000 378210000 85308000 17367000 67941000 7920 61;490 8097 28860;28861;28862;28863;28864;28865 43531;43532;43533;43534;43535;43536;43537;43538;43539;43540 43535 10 LQVGQGVSLTLK LTSHLNDTFRFDSEKLQVGQGVSLTLKTTE SEKLQVGQGVSLTLKTTEPGVTGLLLAVEG K L Q L K T 0 0 0 0 0 2 0 2 0 0 3 1 0 0 0 1 1 0 0 2 0 0 12 0 1241.7343 Q14690;B4DH82 Q14690 970 981 PDCD11 Protein RRP5 homolog yes no 2 4.4897E-16 143.5 1 2 0.69802 1.0546 8.6691 3 Median 0.93922 1.2123 NaN 1 0 Median 0.6863 1.0443 1.3897 2 0 Median 43744000 24442000 19302000 8212600 4608500 3604100 35532000 19834000 15698000 7921 1494 8098 28866;28867;28868 43541;43542;43543 43543 3 LQVLIESK GTELFRDSGTMWQLKLQVLIESKSPDIAML GTMWQLKLQVLIESKSPDIAMLFEEAFVHL K L Q S K S 0 0 0 0 0 1 1 0 0 1 2 1 0 0 0 1 0 0 0 1 0 0 8 0 928.55933 B3KQ21;Q9NYH9;B3KX32 B3KQ21 410 417 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 0.0017081 118.74 2 2 0.90325 1.251 27.448 4 Median 1.2964 1.6465 21.83 2 0 Median 0.71445 1.081 3.6427 2 0 Median 61323000 31098000 30225000 32743000 14028000 18714000 28580000 17069000 11510000 7922 768 8099 28869;28870;28871;28872 43544;43545;43546;43547;43548;43549;43550 43545 7 LQVLVGDVLK AELHKRVQGTPVASKLQVLVGDVLKTDLPF PVASKLQVLVGDVLKTDLPFFDTCVANLPY K L Q L K T 0 0 0 1 0 1 0 1 0 0 3 1 0 0 0 0 0 0 0 3 0 0 10 0 1082.6699 A8K9K8;Q9UNQ2;A0A0C4DGB1;B4DRY2;D6RCL3 A8K9K8 107 116 DIMT1 Probable dimethyladenosine transferase yes no 2 0.0032031 97.635 4 2 1.1016 1.3959 24.034 5 Median 1.144 1.4515 10.787 4 0 Median 0.58738 0.8923 NaN 1 0 Median 48166000 22050000 26116000 37557000 15549000 22008000 10609000 6500900 4107900 7923 648 8100 28873;28874;28875;28876;28877;28878 43551;43552;43553;43554;43555;43556;43557 43555 7 LQVVDQPLPVR FHSPNPEIPALLDGRLQVVDQPLPVRGGNV LDGRLQVVDQPLPVRGGNVGINSFGFGGSN R L Q V R G 0 1 0 1 0 2 0 0 0 0 2 0 0 0 2 0 0 0 0 3 0 0 11 0 1262.7347 A0A0U1RQF0;P49327 A0A0U1RQF0 374 384 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00034146 112.75 3 2 0.7406 0.9928 130.06 5 Median 0.72244 0.99218 3.1534 3 0 Median 7.1857 10.331 27.525 2 0 Median 46201000 21499000 24702000 33076000 19563000 13513000 13124000 1935500 11189000 7924 486 8101 28879;28880;28881;28882;28883 43558;43559;43560;43561;43562;43563;43564;43565;43566 43564 9 LQVVGR SATKVTADVINAAEKLQVVGRAGTGVDNVD ADVINAAEKLQVVGRAGTGVDNVDLEAATR K L Q G R A 0 1 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 2 0 0 6 0 670.41261 O43175;V9HW79;Q5SZU1;B3KSC3 O43175 70 75 PHGDH;HEL-S-113 D-3-phosphoglycerate dehydrogenase yes no 2 0.036898 99.228 1 0.66463 0.90075 NaN 1 Median 0.66463 0.90075 NaN 1 0 Median NaN NaN NaN 0 0 Median 8994200 5929100 3065100 8994200 5929100 3065100 0 0 0 7925 1182 8102 28884 43567 43567 1 LQVVLNESNADTYAGRPLPSK KKMENIQKLGNYTLKLQVVLNESNADTYAG ESNADTYAGRPLPSKAIKFSVKEGKPEKFS K L Q S K A 2 1 2 1 0 1 1 1 0 0 3 1 0 0 2 2 1 0 1 2 0 0 21 1 2271.1859 A6NHR9;J3KTL8;J3QSH1 A6NHR9 792 812 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3 2.6731E-19 132.67 4 2 0.83052 1.0837 32.094 5 Median 0.80982 1.0682 3.746 4 0 Median 1.4553 2.1874 NaN 1 0 Median 85434000 40916000 44517000 71921000 37974000 33947000 13513000 2942100 10571000 7926 568 8103 28885;28886;28887;28888;28889;28890 43568;43569;43570;43571;43572;43573;43574;43575;43576;43577 43568 10 LQWDLGLGHLPR AWLKVMEKAHINLVRLQWDLGLGHLPRFFG LVRLQWDLGLGHLPRFFGTAVTCLLSPHSQ R L Q P R F 0 1 0 1 0 1 0 2 1 0 4 0 0 0 1 0 0 1 0 0 0 0 12 0 1403.7674 B3KMR5;Q5JTH9;B3KY97 B3KMR5 404 415 RRP12 RRP12-like protein yes no 3 0.00092551 50.786 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10263000 10263000 0 0 0 0 10263000 10263000 0 7927 756 8104 28891;28892 43578;43579 43579 2 LQYFMEQFYGIIR VSNMVAKNAEMHKNKLQYFMEQFYGIIRNV NKLQYFMEQFYGIIRNVDSNNKELSIAIRG K L Q I R N 0 1 0 0 0 2 1 1 0 2 1 0 1 2 0 0 0 0 2 0 0 0 13 0 1706.849 P78527;B4DL41 P78527 338 350 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.0013116 90.149 1 0.56554 0.77372 NaN 1 Median 0.56554 0.77372 NaN 1 0 Median NaN NaN NaN 0 0 Median 1139000 787060 351900 1139000 787060 351900 0 0 0 7928 1427 8105 28893 43580 43580 631 1 LQYLQGDYTLHAAIPPLEEVYSLQR HPAPEENLQVLAALRLQYLQGDYTLHAAIP HAAIPPLEEVYSLQRLKARISQSTKTFTPC R L Q Q R L 2 1 0 1 0 3 2 1 1 1 5 0 0 0 2 1 1 0 3 1 0 0 25 0 2916.5022 Q69YP8;A0A0A0MQX1;Q9HD67;B4E0P0;B4DIJ5;Q8NCI3;E9PEW5;B7ZA23;B7Z3D4 Q69YP8 1475 1499 DKFZp762A083;MYO10 Unconventional myosin-X yes no 3 0.00046296 54.261 1 0.40926 0.5792 NaN 1 Median 0.40926 0.5792 NaN 1 0 Median NaN NaN NaN 0 0 Median 1795500 982770 812690 1795500 982770 812690 0 0 0 7929 385 8106 28894 43581 43581 1 LQYNFDTIDQQFCDLADNK RNLSFNELYPSGTLKLQYNFDTIDQQFCDL FDTIDQQFCDLADNKDTAECDIAEVDGELF K L Q N K D 1 0 2 4 1 3 0 0 0 1 2 1 0 2 0 0 1 0 1 0 0 0 19 0 2347.0427 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1553 1571 AHCTF1 Protein ELYS yes no 2 4.274E-42 192.39 4 0.68835 0.87506 6.6351 4 Median 0.68835 0.87506 6.6351 4 0 Median NaN NaN NaN 0 0 Median 37057000 21049000 16009000 37057000 21049000 16009000 0 0 0 7930 1670 8107 28895;28896;28897;28898 43582;43583;43584;43585;43586;43587;43588;43589 43583 8 LRAEIDNVK NTKHEISEMNRMIQRLRAEIDNVKKQCANL NRMIQRLRAEIDNVKKQCANLQNAIADAEQ R L R V K K 1 1 1 1 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 9 1 1056.5928 CON__P13647;P13647;B4E1T1;B4DL32;H0YI76 CON__P13647 396 404 KRT5 Keratin, type II cytoskeletal 5 yes no 2 0.034466 80.688 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14032000 14032000 0 0 0 0 14032000 14032000 0 + 7931 961 8108 28899 43590 43590 1 LRAPTSTEANHIR ATWQQSSLSLRWASRLRAPTSTEANHIRLS SRLRAPTSTEANHIRLSCLAVGLALLKRCV R L R I R L 2 2 1 0 0 0 1 0 1 1 1 0 0 0 1 1 2 0 0 0 0 0 13 1 1464.7797 A8KA74;P78316;E9PFK5 A8KA74 672 684 NOP14 Nucleolar protein 14 yes no 3 0.00050413 94.781 1 0.93455 1.2966 NaN 1 Median 0.93455 1.2966 NaN 1 0 Median NaN NaN NaN 0 0 Median 12481000 6182800 6297700 12481000 6182800 6297700 0 0 0 7932 652 8109 28900 43591 43591 1 LRASITPGTILIILTGR LLSHGKKPFSQHVRKLRASITPGTILIILT ASITPGTILIILTGRHRGKRVVFLKQLASG K L R G R H 1 2 0 0 0 0 0 2 0 4 3 0 0 0 1 1 3 0 0 0 0 0 17 1 1794.1091 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3;F8VZ45;U3KQR5;F8VR69 Q8TBK5 140 156 RPL6 60S ribosomal protein L6 yes no 3 4.9235E-11 149.31 9 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 136780000 136780000 0 136780000 136780000 0 0 0 0 7933 277 8110 28901;28902;28903;28904;28905;28906;28907;28908;28909 43592;43593;43594;43595;43596;43597;43598;43599;43600 43592 9 LRDFLLDIEDR YDPSQMCAEKQLELRLRDFLLDIEDRIYQG LELRLRDFLLDIEDRIYQGTLGAIKVTDRH R L R D R I 0 2 0 3 0 0 1 0 0 1 3 0 0 1 0 0 0 0 0 0 0 0 11 1 1403.7409 D3DS96;Q9NRL2;Q59G54 D3DS96 978 988 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 3 0.018865 59.898 1 0.51614 0.70072 NaN 1 Median 0.51614 0.70072 NaN 1 0 Median NaN NaN NaN 0 0 Median 1751600 1033500 718160 1751600 1033500 718160 0 0 0 7934 979 8111 28910 43601 43601 1 LRDLEDSLAR QLSQLQKQLAAKEAKLRDLEDSLARERDTS AKEAKLRDLEDSLARERDTSRRLLAEKERE K L R A R E 1 2 0 2 0 0 1 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 10 1 1186.6306 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;Q5TCI8 P02545 320 329 LMNA Prelamin-A/C;Lamin-A/C yes no 2;3 3.4704E-17 154.84 7 0.56814 0.77443 4.5981 7 Median 0.56814 0.77443 4.5981 7 0 Median NaN NaN NaN 0 0 Median 608160000 376740000 231420000 608160000 376740000 231420000 0 0 0 7935 1229 8112 28911;28912;28913;28914;28915;28916;28917 43602;43603;43604;43605;43606;43607;43608;43609;43610;43611;43612;43613;43614 43610 13 LRDPAQQVR FPNLVDPWTPHLYARLRDPAQQVRKTAGLV PHLYARLRDPAQQVRKTAGLVMTHLILKDM R L R V R K 1 2 0 1 0 2 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 9 1 1081.5992 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1101 1109 NCAPD2 Condensin complex subunit 1 yes no 2;3 3.0202E-09 125.82 5 3 0.60609 0.83281 13.57 8 Median 0.63752 0.88266 6.3187 5 0 Median 0.4595 0.68422 4.6626 3 0 Median 406300000 256200000 150100000 301060000 183200000 117860000 105240000 72999000 32241000 7936 757 8113 28918;28919;28920;28921;28922;28923;28924;28925 43615;43616;43617;43618;43619;43620;43621;43622;43623;43624 43619 10 LRDYQVR CTRFEDSPSYVKWGKLRDYQVRGLNWLISL PSYVKWGKLRDYQVRGLNWLISLYENGING K L R V R G 0 2 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 7 1 948.51411 O60264;B7ZAX9;B4DZC0;Q4W5G3 O60264 180 186 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2;3 0.007727 101.6 3 1 2.0908 2.8574 14.97 4 Median 1.9393 2.6257 12.172 3 0 Median 2.2587 3.3981 NaN 1 0 Median 114430000 38352000 76080000 82305000 28405000 53900000 32128000 9946900 22181000 7937 1189 8114 28926;28927;28928;28929 43625;43626;43627;43628;43629 43626 5 LREANQQQQFNR LWKKLLEATELKGIKLREANQQQQFNRNVE GIKLREANQQQQFNRNVEDIELWLYEVEGH K L R N R N 1 2 2 0 0 4 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 12 1 1530.7651 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 674 685 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.014886 90.108 1 0.69805 0.96028 NaN 1 Median 0.69805 0.96028 NaN 1 0 Median NaN NaN NaN 0 0 Median 1998200 1022900 975340 1998200 1022900 975340 0 0 0 7938 1476 8115 28930 43630 43630 1 LRECLPLIIFLR LTGVFAPRPSTGPHKLRECLPLIIFLRNRL PHKLRECLPLIIFLRNRLKYALTGDEVKKI K L R L R N 0 2 0 0 1 0 1 0 0 2 4 0 0 1 1 0 0 0 0 0 0 0 12 1 1541.9116 B2R491;P62701;Q96IR1;Q53HV1;B7Z1M6 B2R491 38 49 RPS4X 40S ribosomal protein S4;40S ribosomal protein S4, X isoform yes no 2;3 4.442E-10 134.99 11 4 0.69594 0.94652 27.108 12 Median 0.74408 1.0244 11.388 8 0 Median 0.39432 0.6204 13.37 4 0 Median 964510000 540480000 424030000 791230000 420540000 370690000 173280000 119950000 53337000 7939 681 8116 28931;28932;28933;28934;28935;28936;28937;28938;28939;28940;28941;28942;28943;28944;28945 43631;43632;43633;43634;43635;43636;43637;43638;43639;43640;43641;43642;43643;43644;43645;43646;43647;43648;43649;43650;43651;43652;43653;43654 43639 23 LREDENAEPVGTTYQK NGLARLSSPVLHRLRLREDENAEPVGTTYQ REDENAEPVGTTYQKTDAAVEMKRINREQF R L R Q K T 1 1 1 1 0 1 3 1 0 0 1 1 0 0 1 0 2 0 1 1 0 0 16 1 1848.8854 Q16643;D6R9W4;B3KSQ7 Q16643 150 165 DBN1 Drebrin yes no 2;3 1.6307E-06 123.1 5 2 1.2413 1.7231 80.133 4 Median 0.73211 0.95627 14.259 2 0 Median 2.4712 3.6245 36.15 2 0 Median 44053000 21348000 22706000 36660000 18848000 17812000 7393100 2499800 4893300 7940 1523 8117 28946;28947;28948;28949;28950;28951;28952 43655;43656;43657;43658;43659;43660;43661;43662 43656 8 LREDLER DGKYSQVLANGLDNKLREDLERLKKIRAHR LANGLDNKLREDLERLKKIRAHRGLRHFWG K L R E R L 0 2 0 1 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 1 929.49304 P62269;J3JS69 P62269 107 113 RPS18 40S ribosomal protein S18 yes no 2;3 1.062E-07 150.4 4 0.74863 1.0152 6.5364 3 Median 0.74863 1.0152 6.5364 3 0 Median NaN NaN NaN 0 0 Median 313730000 176220000 137510000 313730000 176220000 137510000 0 0 0 7941 1402 8118 28953;28954;28955;28956 43663;43664;43665;43666 43665 4 LREFEEGLVSQYK TEAEKSTKTRKETQKLREFEEGLVSQYKFY QKLREFEEGLVSQYKFYLENLEQMVKDWKQ K L R Y K F 0 1 0 0 0 1 3 1 0 0 2 1 0 1 0 1 0 0 1 1 0 0 13 1 1596.8148 A8K905;Q8WTT2;B4DXL4 A8K905 294 306 NOC3L Nucleolar complex protein 3 homolog yes no 2;3 0.0011537 85.522 4 1 0.86419 1.1618 16.206 5 Median 0.88479 1.1543 15.291 4 0 Median 0.86419 1.331 NaN 1 0 Median 38356000 21421000 16934000 32960000 19210000 13750000 5395400 2211300 3184200 7942 643 8119 28957;28958;28959;28960;28961 43667;43668;43669;43670;43671;43672;43673;43674 43672 8 LRELLIIGGVAAR LNNIKQFKKYIDNPKLRELLIIGGVAARDQ PKLRELLIIGGVAARDQLSVLENGVDIVVG K L R A R D 2 2 0 0 0 0 1 2 0 2 3 0 0 0 0 0 0 0 0 1 0 0 13 1 1379.8613 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 237 249 DDX1 ATP-dependent RNA helicase DDX1 yes no 3 0.0088876 33.204 1 0.67141 0.86989 NaN 1 Median 0.67141 0.86989 NaN 1 0 Median NaN NaN NaN 0 0 Median 7597700 3635000 3962700 7597700 3635000 3962700 0 0 0 7943 378 8120 28962 43675 43675 1 LRENSASQISQLEQQLSAK QLVEDVQRLQASLTKLRENSASQISQLEQQ SASQISQLEQQLSAKNSTLKQLEEKLKGQA K L R A K N 2 1 1 0 0 4 2 0 0 1 3 1 0 0 0 4 0 0 0 0 0 0 19 1 2129.1077 P39880;Q13948;Q3LIA3 P39880 316 334 CUX1;Nbla10317 Homeobox protein cut-like 1;Protein CASP yes no 3 0.00053954 39.825 1 0.63856 0.81494 NaN 1 Median 0.63856 0.81494 NaN 1 0 Median NaN NaN NaN 0 0 Median 9087900 5898600 3189300 9087900 5898600 3189300 0 0 0 7944 1331 8121 28963 43676 43676 1 LRETEILFHSSLLR RAELYKEPTNEELNRLRETEILFHSSLLRL RLRETEILFHSSLLRLQVEELLKEVRLSEK R L R L R L 0 2 0 0 0 0 2 0 1 1 4 0 0 1 0 2 1 0 0 0 0 0 14 1 1712.9574 Q9H6R4;A0A0A0MRW6;B4DF80 Q9H6R4 72 85 NOL6 Nucleolar protein 6 yes no 3;4 0.017662 26.771 2 0.89566 1.2028 11.942 2 Median 0.89566 1.2028 11.942 2 0 Median NaN NaN NaN 0 0 Median 38973000 21516000 17457000 38973000 21516000 17457000 0 0 0 7945 1738 8122 28964;28965 43677;43678;43679 43679 3 LREYEAALNSK NYAKKESDLNGAQIKLREYEAALNSKDAAL AQIKLREYEAALNSKDAALATALGDKKSLE K L R S K D 2 1 1 0 0 0 2 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 11 1 1292.6725 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;A0A0D9SFY5 P20700 135 145 LMNB1 Lamin-B1 yes no 2 0.032181 51.268 1 1.603 2.3636 NaN 1 Median NaN NaN NaN 0 0 Median 1.603 2.3636 NaN 1 0 Median 3931600 1462800 2468800 0 0 0 3931600 1462800 2468800 7946 1285 8123 28966 43680 43680 1 LRGEVGLLFTNR PSDEYKDNLHQVSKRLRGEVGLLFTNRTKE SKRLRGEVGLLFTNRTKEEVNEWFTKYTEM R L R N R T 0 2 1 0 0 0 1 2 0 0 3 0 0 1 0 0 1 0 0 1 0 0 12 1 1373.7779 A0A024RAE1;Q9UKD2 A0A024RAE1 96 107 C1orf33;MRTO4 mRNA turnover protein 4 homolog yes no 3 0.010962 47.915 3 0.5482 0.7461 8.4114 2 Median 0.5482 0.7461 8.4114 2 0 Median NaN NaN NaN 0 0 Median 35406000 24845000 10561000 35406000 24845000 10561000 0 0 0 7947 240 8124 28967;28968;28969 43681;43682;43683 43683 3 LRGLEAAQIK HALTEKEGKDQELAKLRGLEAAQIKELEEL QELAKLRGLEAAQIKELEELRQTVKQLKEQ K L R I K E 2 1 0 0 0 1 1 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 10 1 1097.6557 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q7Z757;Q4LE64;Q14980 Q4LE64 1069 1078 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 0.00087247 63.694 3 0.7666 0.99763 9.1493 3 Median 0.7666 0.99763 9.1493 3 0 Median NaN NaN NaN 0 0 Median 28983000 16203000 12780000 28983000 16203000 12780000 0 0 0 7948 148;1499 8125 28970;28971;28972 43684;43685;43686;43687;43688 43686 5 LRHDLER EEMKAAKEKLKYWQRLRHDLERARLLIELL EKLKYWQRLRHDLERARLLIELLRKREKLK R L R E R A 0 2 0 1 0 0 1 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 7 1 937.50936 Q86X06;A0A024R4V5;B4E3L9;A0A024R4W4;O95696;B7Z926;Q9Y4Q3;J3KQ61;Q59G93;B4DZ41;P55201 Q86X06 528 534 BRD1;DKFZp434B094;BRPF1 Bromodomain-containing protein 1;Peregrin no no 3 0.014006 54.157 1 0.88063 1.1734 NaN 1 Median 0.88063 1.1734 NaN 1 0 Median NaN NaN NaN 0 0 Median 12232000 7373700 4858500 12232000 7373700 4858500 0 0 0 7949 128;1379 8126 28973 43689 43689 1 LRHEILLSQSVR MMLVTSGAVAFGKQRLRHEILLSQSVRQAL KQRLRHEILLSQSVRQALHSGQNQLKEMAI R L R V R Q 0 2 0 0 0 1 1 0 1 1 3 0 0 0 0 2 0 0 0 1 0 0 12 1 1449.8416 P54886 P54886 127 138 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 3 0.048373 46.88 1 1.4731 2.0182 NaN 1 Median 1.4731 2.0182 NaN 1 0 Median NaN NaN NaN 0 0 Median 3775400 1066400 2709000 3775400 1066400 2709000 0 0 0 7950 1375 8127 28974 43690 43690 1 LRITESEEVVSR IDRVRSLETENAGLRLRITESEEVVSREVS GLRLRITESEEVVSREVSGIKAAYEAELGD R L R S R E 0 2 0 0 0 0 3 0 0 1 1 0 0 0 0 2 1 0 0 2 0 0 12 1 1416.7573 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;W5X314 P02545 61 72 LMNA Prelamin-A/C;Lamin-A/C yes no 2;3 0.00024045 83.53 4 0.69856 0.95033 24.83 4 Median 0.69856 0.95033 24.83 4 0 Median NaN NaN NaN 0 0 Median 52540000 29935000 22605000 52540000 29935000 22605000 0 0 0 7951 1229 8128 28975;28976;28977;28978 43691;43692;43693;43694 43694 4 LRLDSIVIQQGR DNTVEERIVERAEMKLRLDSIVIQQGRLVD EMKLRLDSIVIQQGRLVDQNLNKIGKDEML K L R G R L 0 2 0 1 0 2 0 1 0 2 2 0 0 0 0 1 0 0 0 1 0 0 12 1 1396.815 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370;D7EZH4 O60264 625 636 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 2;3 6.2728E-06 101.39 6 4 2.0971 2.997 6.8142 10 Median 2.2249 3.0806 6.4192 6 0 Median 1.8566 2.9057 7.1666 4 0 Median 431860000 134600000 297260000 235280000 72732000 162550000 196580000 61865000 134720000 7952 1189 8129 28979;28980;28981;28982;28983;28984;28985;28986;28987;28988 43695;43696;43697;43698;43699;43700;43701;43702;43703;43704;43705;43706;43707;43708;43709 43703 15 LRLEEDKPAVER VAAAEEERRLRQRNRLRLEEDKPAVERCLE RNRLRLEEDKPAVERCLEELVFGDVENDED R L R E R C 1 2 0 1 0 0 3 0 0 0 2 1 0 0 1 0 0 0 0 1 0 0 12 2 1453.7889 Q9Y5J1;B2RAX6 Q9Y5J1 78 89 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 3 4.6165E-06 84.892 2 2 1.0124 1.2242 5.3737 4 Linear 0.94777 1.161 4.0158 2 0 Median 0.75861 1.2622 0.85545 2 0 Median 83076000 40701000 42375000 53124000 25446000 27678000 29951000 15255000 14696000 7953 1830 8130 28989;28990;28991;28992 43710;43711;43712;43713;43714;43715;43716 43714 7 LRNDLLNIIR KILKKHMSKDPTTQKLRNDLLNIIREKNLA PTTQKLRNDLLNIIREKNLAHPVIQNFSYE K L R I R E 0 2 2 1 0 0 0 0 0 2 3 0 0 0 0 0 0 0 0 0 0 0 10 1 1238.7459 Q15554;H3BR06;U3KQ35;H3BTA7;J3KSJ9 Q15554 233 242 TERF2 Telomeric repeat-binding factor 2 yes no 3 0.0021291 70.808 2 2 0.73907 1.0239 7.0321 3 Median 0.72844 0.91346 NaN 1 0 Median 0.76233 1.0311 0.99642 2 0 Median 18150000 11615000 6535700 6992100 4780900 2211300 11158000 6833700 4324500 7954 1513 8131 28993;28994;28995;28996 43717;43718;43719;43720;43721 43719 5 LRNDPLNQNK TGKMMPSKLQKNKQRLRNDPLNQNKGKPDL KNKQRLRNDPLNQNKGKPDLNTTLPIRQTA R L R N K G 0 1 3 1 0 1 0 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 10 1 1210.6418 Q9UBB5;O60535;X6RBL6;A0A024R2B8 Q9UBB5 225 234 MBD2;NY-CO-41 Methyl-CpG-binding domain protein 2 yes no 2 0.0319 55.461 1 0.99368 1.4924 NaN 1 Median NaN NaN NaN 0 0 Median 0.99368 1.4924 NaN 1 0 Median 4380000 2059000 2320900 0 0 0 4380000 2059000 2320900 7955 1781 8132 28997 43722 43722 1 LRPFVDGTAGASDPPCVR ATRRPPPARVRVAVRLRPFVDGTAGASDPP FVDGTAGASDPPCVRGMDSCSLEIANWRNH R L R V R G 2 2 0 2 1 0 0 2 0 0 1 0 0 1 3 1 1 0 0 2 0 0 18 1 1913.9418 Q14807;H3BQB9;B4DNF2 Q14807 50 67 KIF22 Kinesin-like protein KIF22 yes no 3 5.6991E-11 122.22 4 0.80783 1.1008 23.761 4 Median 0.80783 1.1008 23.761 4 0 Median NaN NaN NaN 0 0 Median 56192000 30820000 25372000 56192000 30820000 25372000 0 0 0 7956 1497 8133 28998;28999;29000;29001 43723;43724;43725;43726;43727;43728;43729;43730 43725 8 LRPGSLVPPLETEK TPPVVSLTPKLRSTRLRPGSLVPPLETEKL RLRPGSLVPPLETEKLPRKRAGAPVGGSPG R L R E K L 0 1 0 0 0 0 2 1 0 0 3 1 0 0 3 1 1 0 0 1 0 0 14 1 1534.8719 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2 A0A0A0MS59 2863 2876 SRCAP Helicase SRCAP yes no 3 0.029099 49.929 1 0.30659 0.4097 NaN 1 Median 0.30659 0.4097 NaN 1 0 Median NaN NaN NaN 0 0 Median 2413800 1589300 824490 2413800 1589300 824490 0 0 0 7957 394 8134 29002 43731;43732 43731 2 LRPIAVIK VNTCHDAGISKKAIKLRPIAVIKG______ ISKKAIKLRPIAVIKG______________ K L R I K G 1 1 0 0 0 0 0 0 0 2 1 1 0 0 1 0 0 0 0 1 0 0 8 1 908.61712 Q9Y3I0 Q9Y3I0 497 504 RTCB tRNA-splicing ligase RtcB homolog yes yes 3 0.046947 27.254 1 0.72192 0.93233 NaN 1 Median 0.72192 0.93233 NaN 1 0 Median NaN NaN NaN 0 0 Median 10542000 6172700 4369700 10542000 6172700 4369700 0 0 0 7958 1819 8135 29003 43733 43733 1 LRPVDQLR KFVLLSAQGSLMFHKLRPVDQLRHLLVSNV GSLMFHKLRPVDQLRHLLVSNVGGDGEEIE K L R L R H 0 2 0 1 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 8 1 995.58761 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 476 483 NUP155 Nuclear pore complex protein Nup155 yes no 3 0.020158 35.295 1 0.55018 0.73315 NaN 1 Median 0.55018 0.73315 NaN 1 0 Median NaN NaN NaN 0 0 Median 12371000 8795200 3576300 12371000 8795200 3576300 0 0 0 7959 29 8136 29004 43734 43734 1 LRPVNPNPLATK AACDATYNEIVTLERLRPVNPNPLATKGSF LERLRPVNPNPLATKGSFFKVTMAVPEDLR R L R T K G 1 1 2 0 0 0 0 0 0 0 2 1 0 0 3 0 1 0 0 1 0 0 12 1 1318.7721 P51116;I3L1Z2 P51116 122 133 FXR2 Fragile X mental retardation syndrome-related protein 2 yes no 3 0.020813 29.215 1 0.72462 0.9407 NaN 1 Median 0.72462 0.9407 NaN 1 0 Median NaN NaN NaN 0 0 Median 16409000 9749900 6659200 16409000 9749900 6659200 0 0 0 7960 1360 8137 29005 43735 43735 1 LRQIFNGTFVK NGVSPKVRKVLQLLRLRQIFNGTFVKLNKA QLLRLRQIFNGTFVKLNKASINMLRIVEPY R L R V K L 0 1 1 0 0 1 0 1 0 1 1 1 0 2 0 0 1 0 0 1 0 0 11 1 1321.7507 A0A024R814;P18124;A8MUD9;C9JIJ5;C9JZ88 A0A024R814 125 135 RPL7 60S ribosomal protein L7 yes no 3 0.0041904 46.352 1 0.55562 0.71044 NaN 1 Median 0.55562 0.71044 NaN 1 0 Median NaN NaN NaN 0 0 Median 9459700 5998300 3461300 9459700 5998300 3461300 0 0 0 7961 189 8138 29006 43736 43736 1 LRQLAEEDLAQQR EEAARLSVAAQEAARLRQLAEEDLAQQRAL ARLRQLAEEDLAQQRALAEKMLKEKMQAVQ R L R Q R A 2 2 0 1 0 3 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 13 1 1568.8271 Q15149 Q15149 2430 2442 PLEC Plectin yes yes 2 0.010684 106.67 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 7962 1507 8139 29007 43737 43737 1 LRSDAGLESDTAMK ______________________________ KLRSDAGLESDTAMKKGETLRKQTEEKEKK K L R M K K 2 1 0 2 0 0 1 1 0 0 2 1 1 0 0 2 1 0 0 0 0 0 14 1 1492.7192 Q9NR30;Q3SWU7 Q9NR30 5 18 DDX21 Nucleolar RNA helicase 2 yes no 2;3 5.3434E-13 116.51 3 0.45023 0.77877 2.6782 3 Median NaN NaN NaN 0 0 Median 0.45023 0.77877 2.6782 3 0 Median 88848000 61829000 27019000 0 0 0 88848000 61829000 27019000 7963 1756 8140 29008;29009;29010 43738;43739;43740;43741 43738 803 4 LRSEIDHVK NTKQEIAEINRMIQRLRSEIDHVKKQCANL NRMIQRLRSEIDHVKKQCANLQAAIADAEQ R L R V K K 0 1 0 1 0 0 1 0 1 1 1 1 0 0 0 1 0 0 0 1 0 0 9 1 1095.6037 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;B4DRY0;CON__P04259;B4DKV4 B4DRR0 362 370 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 3 0.027504 78.098 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4067200 4067200 0 4067200 4067200 0 0 0 0 + 7964 459;953 8141 29011 43742 43742 1 LRSEIDNVK NSKIEISELNRVIQRLRSEIDNVKKQISNL NRVIQRLRSEIDNVKKQISNLQQSISDAEQ R L R V K K 0 1 1 1 0 0 1 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 9 1 1072.5877 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 408 416 KRT1 Keratin, type II cytoskeletal 1 no no 2;3 6.4582E-06 131.12 4 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 527800000 527800000 0 208700000 208700000 0 319090000 319090000 0 + 7965 1113;1114 8142 29012;29013;29014;29015;29016;29017;29018 43743;43744;43745;43746;43747;43748;43749 43743 7 LRSEIDNVKK NSKIEISELNRVIQRLRSEIDNVKKQISNL RVIQRLRSEIDNVKKQISNLQQSISDAEQR R L R K K Q 0 1 1 1 0 0 1 0 0 1 1 2 0 0 0 1 0 0 0 1 0 0 10 2 1200.6826 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 408 417 KRT1 Keratin, type II cytoskeletal 1 no no 2;3 5.6501E-15 180.74 5 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 423270000 423270000 0 423270000 423270000 0 0 0 0 + 7966 1113;1114 8143 29019;29020;29021;29022;29023 43750;43751;43752;43753;43754 43754 5 LRSPQILVPTLFNLLSR QRVTLILELLQHKKKLRSPQILVPTLFNLL SPQILVPTLFNLLSRCLEPLPQEQGNMEYT K L R S R C 0 2 1 0 0 1 0 0 0 1 5 0 0 1 2 2 1 0 0 1 0 0 17 1 1966.1728 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263 B2RWN5 1220 1236 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 1.3018E-07 107.15 3 0.91832 1.2742 59.366 3 Median 0.91832 1.2742 59.366 3 0 Median NaN NaN NaN 0 0 Median 43342000 23364000 19978000 43342000 23364000 19978000 0 0 0 7967 748 8144 29024;29025;29026 43755;43756;43757;43758;43759 43759 5 LRTETQNALK GKGRKKIRKILKDDKLRTETQNALKEEEER LKDDKLRTETQNALKEEEERRKRIAERERE K L R L K E 1 1 1 0 0 1 1 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 10 1 1172.6513 A4LAA3;P46100;A0A096LNR8 A4LAA3 1489 1498 ATRX Transcriptional regulator ATRX yes no 2 0.02539 58.246 2 0.87407 1.3327 6.8217 2 Median NaN NaN NaN 0 0 Median 0.87407 1.3327 6.8217 2 0 Median 11019000 5701300 5317400 0 0 0 11019000 5701300 5317400 7968 556 8145 29027;29028 43760;43761 43761 2 LRTETQNALKEEEER GKGRKKIRKILKDDKLRTETQNALKEEEER LRTETQNALKEEEERRKRIAEREREREKLR K L R E R R 1 2 1 0 0 1 5 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 15 2 1844.9228 A4LAA3;P46100;A0A096LNR8 A4LAA3 1489 1503 ATRX Transcriptional regulator ATRX yes no 3 0.0029791 76.574 2 0.61283 0.72575 1.8826 2 Median 0.61283 0.72575 1.8826 2 0 Median NaN NaN NaN 0 0 Median 9774000 5564900 4209100 9774000 5564900 4209100 0 0 0 7969 556 8146 29029;29030 43762;43763;43764 43764 3 LRTFYEK ATGCQKLIEVDDERKLRTFYEKRMATEVAA IEVDDERKLRTFYEKRMATEVAADALGEEW K L R E K R 0 1 0 0 0 0 1 0 0 0 1 1 0 1 0 0 1 0 1 0 0 0 7 1 955.51272 Q96DV6;A2A3R6;P62753;A2A3R7 Q96DV6 24 30 RPS6 40S ribosomal protein S6 yes no 2;3 0.024347 110.22 6 1.0359 1.3609 5.0914 6 Median 1.0359 1.3609 5.0914 6 0 Median NaN NaN NaN 0 0 Median 789160000 385380000 403780000 789160000 385380000 403780000 0 0 0 7970 535 8147 29031;29032;29033;29034;29035;29036 43765;43766;43767;43768;43769;43770;43771;43772 43770 7 LRVDIRPQLLK SYSLIRKYVSQYYPKLRVDIRPQLLKNALQ YYPKLRVDIRPQLLKNALQRAVERGQLEQI K L R L K N 0 2 0 1 0 1 0 0 0 1 3 1 0 0 1 0 0 0 0 1 0 0 11 2 1349.8507 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 292 302 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 3;4 5.3608E-05 77.062 2 2 0.48733 0.71542 11.769 4 Median 0.54421 0.65491 7.6094 2 0 Median 0.44133 0.77976 7.2909 2 0 Median 152130000 101160000 50971000 65792000 44127000 21664000 86339000 57032000 29307000 7971 1565 8148 29037;29038;29039;29040 43773;43774;43775;43776;43777;43778 43778 5 LRVEFPR DAVYGRDGYDYDGYRLRVEFPRSGRGTGRG GYDYDGYRLRVEFPRSGRGTGRGGGGGGGG R L R P R S 0 2 0 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 7 1 915.52904 J3KTL2;Q07955;Q59FA2;A8K1L8;Q13242;A8K3M9;S4R3G0;B4DFT9 J3KTL2 84 90 SRSF1;SRSF9 Serine/arginine-rich splicing factor 1;Serine/arginine-rich splicing factor 9 no no 3 0.0055485 90.777 4 1 0.53353 0.71939 16.114 4 Median 0.53509 0.72709 4.347 3 0 Plateau 0.71182 0.96144 NaN 1 0 Median 106540000 70032000 36511000 100270000 66505000 33770000 6268100 3527300 2740800 7972 1139;1467 8149 29041;29042;29043;29044;29045 43779;43780;43781;43782;43783;43784;43785 43783 7 LSAAVTEAFVR SSLDWDRACFTMDPKLSAAVTEAFVRLHEE MDPKLSAAVTEAFVRLHEEGIIYRSTRLVN K L S V R L 3 1 0 0 0 0 1 0 0 0 1 0 0 1 0 1 1 0 0 2 0 0 11 0 1162.6346 A0A024RCN6;P26640;A0A140T936 A0A024RCN6 451 461 VARS Valine--tRNA ligase yes no 2 1.8754E-05 94.692 3 2 0.35953 0.49543 97.021 3 Median 0.35589 0.48798 2.1421 2 0 Median 2.0256 2.619 NaN 1 0 Median 17128000 11179000 5949000 14118000 10228000 3889500 3010400 950860 2059500 7973 297 8150 29046;29047;29048;29049;29050 43786;43787;43788;43789;43790;43791 43788 5 LSAEENPDDSEVPSSSGINSTK ERKTREKKSLQEKGKLSAEENPDDSEVPSS DDSEVPSSSGINSTKSQDKDVNEGETSDGV K L S T K S 1 0 2 2 0 0 3 1 0 1 1 1 0 0 2 6 1 0 0 1 0 0 22 0 2262.0135 Q9Y5Q9 Q9Y5Q9 42 63 GTF3C3 General transcription factor 3C polypeptide 3 yes yes 2 5.0209E-13 121.32 1 1 0.88654 1.2348 12.07 2 Median 0.86117 1.1338 NaN 1 0 Median 0.91266 1.3448 NaN 1 0 Median 9615800 5688300 3927600 2428700 1835300 593370 7187200 3853000 3334200 7974 1831 8151 29051;29052 43792;43793;43794 43793 3 LSAFFEEHISSVLSDYK YTPSKRSRIYSMSLRLSAFFEEHISSVLSD AFFEEHISSVLSDYKSALRFHKRNTITKRR R L S Y K S 1 0 0 1 0 0 2 0 1 1 2 1 0 2 0 4 0 0 1 1 0 0 17 0 1970.9626 Q8WWQ0;Q9NWP3 Q8WWQ0 1410 1426 PHIP PH-interacting protein yes no 3 2.8025E-14 145.94 4 2 0.93521 1.3273 13.002 6 Median 0.99876 1.2313 15.059 4 0 Median 0.89108 1.3874 6.4686 2 0 Median 196460000 99180000 97284000 140030000 70164000 69865000 56436000 29016000 27419000 7975 1668 8152 29053;29054;29055;29056;29057;29058 43795;43796;43797;43798;43799;43800;43801;43802;43803;43804;43805;43806;43807 43796 13 LSAGFDFK SPSAAGGQQKTRKPKLSAGFDFKQLYCKLC QKTRKPKLSAGFDFKQLYCKLCKRQFTSKQ K L S F K Q 1 0 0 1 0 0 0 1 0 0 1 1 0 2 0 1 0 0 0 0 0 0 8 0 883.44397 Q2TB10;B7Z4V7 Q2TB10 477 484 ZNF800 Zinc finger protein 800 yes no 2 0.015285 96.19 2 0.79937 1.0203 21.816 2 Median 0.79937 1.0203 21.816 2 0 Median NaN NaN NaN 0 0 Median 19182000 10232000 8949400 19182000 10232000 8949400 0 0 0 7976 1530 8153 29059;29060 43808;43809 43808 2 LSAKPAPPKPEPK GSKVTKQEPTRRSARLSAKPAPPKPEPKPR ARLSAKPAPPKPEPKPRKTSAKKEPGAKIS R L S P K P 2 0 0 0 0 0 1 0 0 0 1 3 0 0 5 1 0 0 0 0 0 0 13 2 1358.7922 A0A087WZE9;Q15651;P05204 P05204 30 42 HMGN3;HMGN2 High mobility group nucleosome-binding domain-containing protein 3;Non-histone chromosomal protein HMG-17 no no 2;3 2.5899E-08 145.83 5 2 0.84366 0.98178 19.849 7 Median 0.87553 0.99185 6.4026 5 0 Median 0.3995 0.68365 3.7427 2 0 Median 55590000 31015000 24574000 46882000 24852000 22029000 8707800 6163000 2544900 7977 367;1236 8154 29061;29062;29063;29064;29065;29066;29067 43810;43811;43812;43813;43814;43815;43816;43817;43818;43819 43814 10 LSAKPAPPKPEPKPK DKAKVKDEPQRRSARLSAKPAPPKPEPKPK LSAKPAPPKPEPKPKKAPAKKGEKVPKGKK R L S P K K 2 0 0 0 0 0 1 0 0 0 1 4 0 0 6 1 0 0 0 0 0 0 15 3 1583.9399 P05204 P05204 28 42 HMGN2 Non-histone chromosomal protein HMG-17 yes yes 2;3;4 3.0359E-05 105.58 6 0.92102 1.0248 15.697 6 Median 0.92102 1.0248 15.697 6 0 Median NaN NaN NaN 0 0 Median 41420000 19610000 21810000 41420000 19610000 21810000 0 0 0 7978 1236 8155 29068;29069;29070;29071;29072;29073 43820;43821;43822;43823;43824;43825;43826 43820 4 LSAKPAPPKPEPKPR GSKVTKQEPTRRSARLSAKPAPPKPEPKPR LSAKPAPPKPEPKPRKTSAKKEPGAKISRG R L S P R K 2 1 0 0 0 0 1 0 0 0 1 3 0 0 6 1 0 0 0 0 0 0 15 3 1611.9461 A0A087WZE9;Q15651 A0A087WZE9 30 44 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 yes no 4 0.02857 51.004 1 0.76404 0.91556 NaN 1 Median 0.76404 0.91556 NaN 1 0 Median NaN NaN NaN 0 0 Median 5392800 2799600 2593100 5392800 2799600 2593100 0 0 0 7979 367 8156 29074 43827 43827 1 LSALGNVTTCNDYVALVHPDLDRETEEILADVLK NSLPDTVQIRRVEERLSALGNVTTCNDYVA DLDRETEEILADVLKVEVFRQTVADQVLVG R L S L K V 3 1 2 4 1 0 3 1 1 1 6 1 0 0 1 1 3 0 1 4 0 0 34 1 3782.9037 P56537 P56537 101 134 EIF6 Eukaryotic translation initiation factor 6 yes yes 4 3.6942E-165 216.52 4 0.78288 1.0321 3.3867 4 Median 0.78288 1.0321 3.3867 4 0 Median NaN NaN NaN 0 0 Median 712740000 388170000 324570000 712740000 388170000 324570000 0 0 0 7980 1382 8157 29075;29076;29077;29078 43828;43829;43830;43831;43832;43833;43834;43835;43836;43837 43834 10 LSALLFK EESVEQKRSKQNATKLSALLFKHKEQLRAE RSKQNATKLSALLFKHKEQLRAEILKKRAL K L S F K H 1 0 0 0 0 0 0 0 0 0 3 1 0 1 0 1 0 0 0 0 0 0 7 0 790.49528 E7ETD6;Q12830;Q9H5E0;J3KSK9;E9PE19;B4DJV8;J3QQQ8 E7ETD6 2455 2461 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.01895 88.643 2 0.57676 0.74865 9.5136 2 Median 0.57676 0.74865 9.5136 2 0 Median NaN NaN NaN 0 0 Median 9158000 5566900 3591100 9158000 5566900 3591100 0 0 0 7981 1015 8158 29079;29080 43838;43839;43840 43840 3 LSCLAVGLALLK SRLRAPTSTEANHIRLSCLAVGLALLKRCV HIRLSCLAVGLALLKRCVLMYGSLPSFHAI R L S L K R 2 0 0 0 1 0 0 1 0 0 5 1 0 0 0 1 0 0 0 1 0 0 12 0 1256.7526 A8KA74;P78316;E9PFK5 A8KA74 685 696 NOP14 Nucleolar protein 14 yes no 2 1.3423E-09 140.11 4 1.0412 1.315 10.055 3 Median 1.0412 1.315 10.055 3 0 Median NaN NaN NaN 0 0 Median 37147000 14936000 22210000 37147000 14936000 22210000 0 0 0 7982 652 8159 29081;29082;29083;29084 43841;43842;43843;43844;43845;43846;43847;43848;43849 43845 9 LSCPALGISK KSSWNQLQDLCRLAKLSCPALGISKRNLYD CRLAKLSCPALGISKRNLYDFEVEYLCDYK K L S S K R 1 0 0 0 1 0 0 1 0 1 2 1 0 0 1 2 0 0 0 0 0 0 10 0 1044.5638 O43463;Q14828 O43463 28 37 SUV39H1;MG44 Histone-lysine N-methyltransferase SUV39H1 yes no 2 0.00078616 81.338 1 1 0.79801 1.0372 3.4175 2 Median 0.86707 1.0625 NaN 1 0 Median 0.73446 1.0124 NaN 1 0 Median 24498000 12669000 11829000 19223000 9805700 9417300 5274600 2863000 2411600 7983 1185 8160 29085;29086 43850;43851 43850 2 LSCPITALGR PPQKAERVKQLQENRLSCPITALGRTMATF LQENRLSCPITALGRTMATFPVAPRYAKML R L S G R T 1 1 0 0 1 0 0 1 0 1 2 0 0 0 1 1 1 0 0 0 0 0 10 0 1086.5856 Q8IY37;F5H3Y4 Q8IY37 764 773 DHX37 Probable ATP-dependent RNA helicase DHX37 yes no 2 0.020491 76.221 2 1.1241 1.5733 9.4439 2 Median 1.1241 1.5733 9.4439 2 0 Median NaN NaN NaN 0 0 Median 10288000 5013100 5275200 10288000 5013100 5275200 0 0 0 7984 1627 8161 29087;29088 43852;43853 43852 2 LSCQNLGAVLDDVPVQGFFK SLRPIFLQPGRPLTRLSCQNLGAVLDDVPV LGAVLDDVPVQGFFKKAGATFRLKDGVLAY R L S F K K 1 0 1 2 1 2 0 2 0 0 3 1 0 2 1 1 0 0 0 3 0 0 20 0 2206.1092 Q14690;B4DH82;B4DES7 Q14690 359 378 PDCD11 Protein RRP5 homolog yes no 2 9.3343E-32 173.33 4 0.97694 1.2425 16.417 4 Median 0.97694 1.2425 16.417 4 0 Median NaN NaN NaN 0 0 Median 38078000 16992000 21086000 38078000 16992000 21086000 0 0 0 7985 1494 8162 29089;29090;29091;29092 43854;43855;43856;43857;43858;43859;43860;43861;43862 43855 9 LSCSTWNYQK RESDWDGIIACHQGKLSCSTWNYQKSTIGA CHQGKLSCSTWNYQKSTIGAYFLKPKELKK K L S Q K S 0 0 1 0 1 1 0 0 0 0 1 1 0 0 0 2 1 1 1 0 0 0 10 0 1285.5761 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 412 421 WDR36 WD repeat-containing protein 36 yes no 2 0.0138 57.859 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2949300 2949300 0 0 0 0 2949300 2949300 0 7986 404 8163 29093 43863 43863 1 LSCTEHDPCGPNPLEPGEIR QHREGMLFISKLDGRLSCTEHDPCGPNPLE HDPCGPNPLEPGEIREYVPPPVPLPPGPST R L S I R E 0 1 1 1 2 0 3 2 1 1 2 0 0 0 4 1 1 0 0 0 0 0 20 0 2277.0154 B2RWP5;Q96L73;Q658U6;Q9H6B5;A0A1D8GZ55;A0A1D8GZ56;Q9H6H8 B2RWP5 1931 1950 NSD1;DKFZp666C163 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 3 0.010489 58.864 2 0.63404 0.85907 NaN 1 Median 0.63404 0.85907 NaN 1 0 Median NaN NaN NaN 0 0 Median 9939100 6294100 3645000 9939100 6294100 3645000 0 0 0 7987 749 8164 29094;29095 43864;43865 43865 2 LSDADLAGPLQK QLLASFLANNPFSCKLSDADLAGPLQKETQ SCKLSDADLAGPLQKETQKLQEMRAQRRTA K L S Q K E 2 0 0 2 0 1 0 1 0 0 3 1 0 0 1 1 0 0 0 0 0 0 12 0 1226.6507 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 441 452 NCAPD2 Condensin complex subunit 1 yes no 2 1.989E-51 234.2 4 2 0.64744 0.84675 11.844 6 Median 0.70815 0.92289 8.2248 4 0 Median 0.46616 0.73663 1.0206 2 0 Median 717380000 445330000 272050000 431450000 251830000 179610000 285930000 193500000 92434000 7988 757 8165 29096;29097;29098;29099;29100;29101 43866;43867;43868;43869;43870;43871;43872;43873;43874;43875;43876 43866 11 LSDESIFSAFLSVVGK GLRKMLDNFDCFGDKLSDESIFSAFLSVVG SDESIFSAFLSVVGKLRRGAKPEGKAIIDE K L S G K L 1 0 0 1 0 0 1 1 0 1 2 1 0 2 0 4 0 0 0 2 0 0 16 0 1697.8876 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1254 1269 NCAPD2 Condensin complex subunit 1 yes no 2 0.001136 43.544 1 0.89248 1.0965 NaN 1 Median 0.89248 1.0965 NaN 1 0 Median NaN NaN NaN 0 0 Median 34201000 17459000 16741000 34201000 17459000 16741000 0 0 0 7989 757 8166 29102 43877;43878 43878 2 LSDFNDITNMLLLK DKHFGKGGSKLLRMKLSDFNDITNMLLLKM KLSDFNDITNMLLLKMNKDSKPPGNLKECS K L S L K M 0 0 2 2 0 0 0 0 0 1 4 1 1 1 0 1 1 0 0 0 0 0 14 0 1635.8542 P78527 P78527 3656 3669 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 2.5075E-05 110.93 2 0.55009 0.69314 NaN 1 Median 0.55009 0.69314 NaN 1 0 Median NaN NaN NaN 0 0 Median 3092600 2009600 1083000 3092600 2009600 1083000 0 0 0 7990 1427 8167 29103;29104 43879;43880 43880 2 LSDGFNGADLR PITKHGEIDYEAIVKLSDGFNGADLRNVCT AIVKLSDGFNGADLRNVCTEAGMFAIRADH K L S L R N 1 1 1 2 0 0 0 2 0 0 2 0 0 1 0 1 0 0 0 0 0 0 11 0 1163.5571 V9HW24;A0A087X2I1;P62333;H0YJC0 V9HW24 334 344 HEL-S-73;PSMC6 26S protease regulatory subunit 10B yes no 2 0.0033821 72.643 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5842400 5842400 0 5842400 5842400 0 0 0 0 7991 379 8168 29105 43881 43881 1 LSDIGEGIR LKTTAALRGQVVQFKLSDIGEGIREVTVKE QVVQFKLSDIGEGIREVTVKEWYVKEGDTV K L S I R E 0 1 0 1 0 0 1 2 0 2 1 0 0 0 0 1 0 0 0 0 0 0 9 0 958.50836 P11182;Q5VVL7 P11182 69 77 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes no 2 0.030705 48.283 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5087200 5087200 0 5087200 5087200 0 0 0 0 7992 1254 8169 29106 43882 43882 1 LSDLQTQLSHEIQSDVLTIN PETIVLSALSGLKKKLSDLQTQLSHEIQSD TQLSHEIQSDVLTIN_______________ K L S I N - 0 0 1 2 0 3 1 0 1 2 4 0 0 0 0 3 2 0 0 1 0 0 20 0 2253.1489 Q6FGR6;P19387 Q6FGR6 256 275 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes no 2 1.279E-05 95.822 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1876100 0 0 1876100 0 0 0 0 0 7993 1283 8170 29107;29108 43883;43884 43883 2 LSDLVNTAILIALNK EKLSAAIVLKNHHSRLSDLVNTAILIALNK LSDLVNTAILIALNKREYEIPSNLTPADVF R L S N K R 2 0 2 1 0 0 0 0 0 2 4 1 0 0 0 1 1 0 0 1 0 0 15 0 1596.9451 Q8WUM0;B4E206;A0A024R3R6;B4E3T7 Q8WUM0 660 674 NUP133 Nuclear pore complex protein Nup133 yes no 2 0.00084658 118.77 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1211800 1211800 0 1211800 1211800 0 0 0 0 7994 1666 8171 29109;29110 43885;43886 43886 2 LSDLVNTAILIALNKR EKLSAAIVLKNHHSRLSDLVNTAILIALNK SDLVNTAILIALNKREYEIPSNLTPADVFF R L S K R E 2 1 2 1 0 0 0 0 0 2 4 1 0 0 0 1 1 0 0 1 0 0 16 1 1753.0462 Q8WUM0;B4E206;A0A024R3R6;B4E3T7 Q8WUM0 660 675 NUP133 Nuclear pore complex protein Nup133 yes no 3 5.5835E-19 160.48 2 0.36509 0.49644 22.366 2 Median 0.36509 0.49644 22.366 2 0 Median NaN NaN NaN 0 0 Median 4354700 3275600 1079100 4354700 3275600 1079100 0 0 0 7995 1666 8172 29111;29112 43887;43888;43889 43888 3 LSDQDLDQALSDEELNAFQK QLRPACAQALTRIFRLSDQDLDQALSDEEL LDQALSDEELNAFQKSCFGHPLAPQALEDV R L S Q K S 2 0 1 4 0 3 2 0 0 0 4 1 0 1 0 2 0 0 0 0 0 0 20 0 2278.0601 Q8IXI1;H3BST5 Q8IXI1 195 214 RHOT2 Mitochondrial Rho GTPase 2 yes no 2 2.2408E-72 222.75 3 0.46202 0.60198 15.978 2 Median 0.46202 0.60198 15.978 2 0 Median NaN NaN NaN 0 0 Median 6917900 5466900 1450900 6917900 5466900 1450900 0 0 0 7996 1626 8173 29113;29114;29115 43890;43891;43892 43891 3 LSDVFGSVR IFTDVALKFEHQLIKLSDVFGSVRTHGIAV EHQLIKLSDVFGSVRTHGIAVSPCGAYLAI K L S V R T 0 1 0 1 0 0 0 1 0 0 1 0 0 1 0 2 0 0 0 2 0 0 9 0 978.51345 Q9UKN8;Q05CN7 Q9UKN8 468 476 GTF3C4 General transcription factor 3C polypeptide 4 yes no 2 0.007264 69.598 2 0.5051 0.68044 NaN 1 Median 0.5051 0.68044 NaN 1 0 Median NaN NaN NaN 0 0 Median 14665000 12423000 2242300 14665000 12423000 2242300 0 0 0 7997 1789 8174 29116;29117 43893;43894 43894 2 LSEDEETVYNVFFAR LVILPQRKFQLHHLKLSEDEETVYNVFFAR LSEDEETVYNVFFARSRSALQSYLKRHESR K L S A R S 1 1 1 1 0 0 3 0 0 0 1 0 0 2 0 1 1 0 1 2 0 0 15 0 1817.8472 A0A024R0F1;Q9UNY4 A0A024R0F1 847 861 TTF2 Transcription termination factor 2 yes no 2 3.9461E-50 220.5 4 2 0.8573 1.2005 12.45 4 Median 0.82738 1.109 14.193 3 0 Median 0.8883 1.2996 NaN 1 0 Median 50417000 26517000 23901000 37574000 17784000 19790000 12844000 8732700 4110900 7998 33 8175 29118;29119;29120;29121;29122;29123 43895;43896;43897;43898;43899;43900;43901;43902;43903;43904;43905;43906 43896 12 LSEELQGLDQLQLDNDVLR KACDYIQELRQSNHRLSEELQGLDQLQLDN LQGLDQLQLDNDVLRQQVEDLKNKNLLLRA R L S L R Q 0 1 1 3 0 3 2 1 0 0 6 0 0 0 0 1 0 0 0 1 0 0 19 0 2197.1226 B1AQP1;A0A0S2Z4U5;P22415 B1AQP1 233 251 USF1 Upstream stimulatory factor 1 yes no 2 0.00038433 58.487 1 0.51274 0.68667 NaN 1 Median 0.51274 0.68667 NaN 1 0 Median NaN NaN NaN 0 0 Median 3160300 2199500 960760 3160300 2199500 960760 0 0 0 7999 470 8176 29124 43907 43907 1 LSEELSGGR RLQRDLKRTVDARLKLSEELSGGRLKPKPI VDARLKLSEELSGGRLKPKPIDVQVITHHM K L S G R L 0 1 0 0 0 0 2 2 0 0 2 0 0 0 0 2 0 0 0 0 0 0 9 0 946.47197 A0A024RAI1;P61158;B4DXW1;Q59FV6;B4DT29;B4DTI0;B4E1U3;B3KM55;Q59GD5;B7Z9W3;Q9P1U1 A0A024RAI1 349 357 ACTR3;ACTR3B Actin-related protein 3;Actin-related protein 3B yes no 2 0.00040844 88.948 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4687800 0 4687800 4687800 0 4687800 0 0 0 8000 243 8177 29125 43908 43908 1 LSEIPLTLHSVSELVR LQDEIAEDYGELGMKLSEIPLTLHSVSELV SEIPLTLHSVSELVRLCLRRSDVQEESEGS K L S V R L 0 1 0 0 0 0 2 0 1 1 4 0 0 0 1 3 1 0 0 2 0 0 16 0 1792.0094 Q9UIG0 Q9UIG0 678 693 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2;3 3.1337E-06 127.36 4 2 57.759 79.381 45.436 3 Median 42.625 58.502 43.161 2 0 Median 64.321 104.8 NaN 1 0 Median 625270000 10061000 615210000 418590000 7496100 411090000 206690000 2564500 204120000 8001 1786 8178 29126;29127;29128;29129;29130;29131 43909;43910;43911;43912;43913;43914;43915;43916 43909 8 LSELEAALQR AEQRGELAIKDANAKLSELEAALQRAKQDM DANAKLSELEAALQRAKQDMARQLREYQEL K L S Q R A 2 1 0 0 0 1 2 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 10 0 1128.6139 CON__P05787;P05787;Q969I0;Q7L4M3;CON__H-INV:HIT000292931;CON__Q9H552;CON__REFSEQ:XP_092267 CON__P05787 353 362 KRT8 Keratin, type II cytoskeletal 8 yes no 2 5.5323E-70 269.38 3 3 0.22815 0.31176 108.22 4 Median 0.22163 0.30186 7.7784 3 0 Median 1.7792 2.5967 NaN 1 0 Median 444860000 353100000 91765000 422810000 345030000 77780000 22054000 8069800 13984000 + 8002 955 8179 29132;29133;29134;29135;29136;29137 43917;43918;43919;43920;43921;43922;43923;43924;43925 43919 9 LSELEPGTGDLR PACHQGLLDRETWHKLSELEPGTGDLRFLD WHKLSELEPGTGDLRFLDPNTLERLTYHQL K L S L R F 0 1 0 1 0 0 2 2 0 0 3 0 0 0 1 1 1 0 0 0 0 0 12 0 1285.6514 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 188 199 EPPK1 Epiplakin no no 2 0.0021519 98.044 1 0.51965 0.72677 NaN 1 Median 0.51965 0.72677 NaN 1 0 Median NaN NaN NaN 0 0 Median 4394100 2784000 1610100 4394100 2784000 1610100 0 0 0 8003 373;1386 8180 29138 43926 43926 1 LSELLPEEVEAEVK CLQKVGDRKNYASAKLSELLPEEVEAEVKA KLSELLPEEVEAEVKAAAEISMGTEVSEED K L S V K A 1 0 0 0 0 0 5 0 0 0 3 1 0 0 1 1 0 0 0 2 0 0 14 0 1583.8294 Q9Y2X3;B3KN82;H7BZ72 Q9Y2X3 222 235 NOP58 Nucleolar protein 58 yes no 2 5.3646E-28 163.46 4 2 0.66789 0.9641 11.961 6 Median 0.71539 0.93524 14.248 4 0 Median 0.62214 0.97923 0.39012 2 0 Median 1288900000 830190000 458700000 552250000 336440000 215810000 736640000 493750000 242890000 8004 1810 8181 29139;29140;29141;29142;29143;29144 43927;43928;43929;43930;43931;43932;43933;43934;43935;43936;43937;43938;43939 43937 13 LSELLR NLKLGIHEDSTNRRRLSELLRYHTSQSGDE HEDSTNRRRLSELLRYHTSQSGDEMTSLSE R L S L R Y 0 1 0 0 0 0 1 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 6 0 729.43849 A0A024RD80;P08238;B4DMA2;B4DGL0;Q58FF9;Q504U7;Q05BW6;Q9H6X9;A8K3W9;K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q96HX7 A0A024RD80 451 456 HSP90AB1;HSP90Af;GBF1;EL52;HSP90AA1 Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha no no 2 0.039196 138.61 3 0.43223 0.60776 3.8879 3 Plateau 0.43223 0.60776 3.8879 3 0 Plateau NaN NaN NaN 0 0 Median 227620000 154740000 72875000 227620000 154740000 72875000 0 0 0 8005 312;1155;598 8182 29145;29146;29147 43940;43941;43942 43942 3 LSENAGIQSLLLSK NLVDSLGYNALHYSKLSENAGIQSLLLSKI KLSENAGIQSLLLSKISQDADLKTPTKPKQ K L S S K I 1 0 1 0 0 1 1 1 0 1 4 1 0 0 0 3 0 0 0 0 0 0 14 0 1471.8246 Q9P0K7;B4DNL3 Q9P0K7 227 240 RAI14 Ankycorbin yes no 2 0.034116 74.987 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3889200 3889200 0 3889200 3889200 0 0 0 0 8006 1777 8183 29148;29149 43943;43944 43943 2 LSENVIDR EADENENITVVKGIRLSENVIDRMKESSPS TVVKGIRLSENVIDRMKESSPSGSKSQRYS R L S D R M 0 1 1 1 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 8 0 944.49271 A4D1N4;C9JRZ6;Q9NX63;B7Z1X9;F8WAR4;F8WD73 A4D1N4 28 35 CHCHD3 MICOS complex subunit MIC19 yes no 2 0.0010101 110.81 4 0.46135 0.62403 5.4896 2 Median 0.46135 0.62403 5.4896 2 0 Median NaN NaN NaN 0 0 Median 42141000 20925000 21217000 42141000 20925000 21217000 0 0 0 8007 549 8184 29150;29151;29152;29153 43945;43946;43947;43948;43949 43948 5 LSEQELQFR EQELKSEFEQNLSEKLSEQELQFRRLSQEQ QNLSEKLSEQELQFRRLSQEQVDNFTLDIN K L S F R R 0 1 0 0 0 2 2 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 9 0 1148.5826 B4DS66;C9J406;H7C463;Q16891;B9A067;B4DQY2;B4DKR1;B4DT20 Q16891 517 525 IMMT MICOS complex subunit MIC60 no no 2 0.00077966 118.74 2 2 0.7926 1.1177 88.777 2 Median 0.45651 0.5966 NaN 1 0 Median 1.3761 2.0938 NaN 1 0 Median 36484000 12161000 24323000 7744100 5213400 2530700 28739000 6947600 21792000 8008 1524;854 8185 29154;29155;29156;29157 43950;43951;43952;43953;43954;43955 43955 6 LSESQLSFR YGSDRRLAELSDYRRLSESQLSFRRSPTKS LSDYRRLSESQLSFRRSPTKSSLDYRRLPD R L S F R R 0 1 0 0 0 1 1 0 0 0 2 0 0 1 0 3 0 0 0 0 0 0 9 0 1065.5455 A0A0S2Z4Z0;Q96PK6;B4DNG4 A0A0S2Z4Z0 617 625 RBM14 RNA-binding protein 14 yes no 2 0.0019667 102.51 2 0.92068 1.2929 6.3698 2 Median NaN NaN NaN 0 0 Median 0.92068 1.2929 6.3698 2 0 Median 20521000 11412000 9109300 0 0 0 20521000 11412000 9109300 8009 472 8186 29158;29159 43956;43957;43958 43958 3 LSESVLSPPCFVR RSEATFQFTVERFSRLSESVLSPPCFVRNL SRLSESVLSPPCFVRNLPWKIMVMPRFYPD R L S V R N 0 1 0 0 1 0 1 0 0 0 2 0 0 1 2 3 0 0 0 2 0 0 13 0 1489.7599 Q6U8A4;Q93009;B7ZAX6;F5H2X1;B7Z842;H3BUV0;H3BTM1;H3BRA2;H3BQD1 Q6U8A4 91 103 USP7 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 7 yes no 2 0.00056051 99.788 4 0.42759 0.57934 21.639 3 Median 0.42759 0.57934 21.639 3 0 Median NaN NaN NaN 0 0 Median 20700000 15992000 4708400 20700000 15992000 4708400 0 0 0 8010 1600 8187 29160;29161;29162;29163 43959;43960;43961;43962;43963;43964 43959 6 LSEVLQAVTDHDIPQQLVER HCTNAYMLVYIRESKLSEVLQAVTDHDIPQ QAVTDHDIPQQLVERLQEEKRIEAQKRKER K L S E R L 1 1 0 2 0 3 2 0 1 1 3 0 0 0 1 1 1 0 0 3 0 0 20 0 2289.1965 Q6U8A4;Q93009;B7ZAX6;B7Z855;H3BND8;B7Z7T5 Q6U8A4 534 553 USP7 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 7 yes no 3 7.2506E-13 126.14 4 0.39477 0.52665 7.8852 3 Median 0.39477 0.52665 7.8852 3 0 Median NaN NaN NaN 0 0 Median 65542000 53127000 12414000 65542000 53127000 12414000 0 0 0 8011 1600 8188 29164;29165;29166;29167 43965;43966;43967;43968;43969 43966 5 LSEVTFRPLFFK TENCIIDCLVAMVVKLSEVTFRPLFFKLFD VVKLSEVTFRPLFFKLFDWAKTEDAPKDRL K L S F K L 0 1 0 0 0 0 1 0 0 0 2 1 0 3 1 1 1 0 0 1 0 0 12 1 1482.8235 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8;Q8N7L7;Q96ES5 B2RWN5 1907 1918 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 0.010285 36.32 1 2 0.67221 1.014 9.1799 3 Plateau 0.78754 1.0275 NaN 1 0 Median 0.54213 0.90301 7.5748 2 0 Median 68419000 39619000 28800000 25488000 14162000 11325000 42931000 25457000 17474000 8012 748 8189 29168;29169;29170 43970;43971;43972;43973 43972 4 LSFAVPFR DEMMKSYVAWDREKRLSFAVPFREMKPVIF AWDREKRLSFAVPFREMKPVIFLDVFLPRV R L S F R E 1 1 0 0 0 0 0 0 0 0 1 0 0 2 1 1 0 0 0 1 0 0 8 0 935.52289 P78527;B4DL41 P78527 892 899 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.00063584 119.57 5 2 0.52842 0.69933 27.312 5 Median 0.45263 0.6089 8.2896 3 0 Median 0.72475 1.0341 2.0241 2 0 Median 54219000 34112000 20107000 30920000 20358000 10563000 23298000 13754000 9543900 8013 1427 8190 29171;29172;29173;29174;29175;29176;29177 43974;43975;43976;43977;43978;43979;43980;43981;43982 43977 9 LSFLPR EERLAWEQQEPGERKLSFLPRKFPSLRAVP EQQEPGERKLSFLPRKFPSLRAVPTYGRFI K L S P R K 0 1 0 0 0 0 0 0 0 0 2 0 0 1 1 1 0 0 0 0 0 0 6 0 731.43301 B2RDN4;Q14137;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 B2RDN4 340 345 BOP1 Ribosome biogenesis protein BOP1 yes no 2 0.036701 80.999 1 0.67458 1.0144 NaN 1 Median NaN NaN NaN 0 0 Median 0.67458 1.0144 NaN 1 0 Median 16073000 8762300 7310700 0 0 0 16073000 8762300 7310700 8014 738 8191 29178 43983 43983 1 LSFLYLITGNLEK QIVEMCYQRTKNFDKLSFLYLITGNLEKLR DKLSFLYLITGNLEKLRKMMKIAEIRKDMS K L S E K L 0 0 1 0 0 0 1 1 0 1 4 1 0 1 0 1 1 0 1 0 0 0 13 0 1509.8443 P53621 P53621 703 715 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 1.0374E-47 209.8 4 0.57248 0.70424 NaN 1 Median 0.57248 0.70424 NaN 1 0 Median NaN NaN NaN 0 0 Median 18372000 14035000 4336800 18372000 14035000 4336800 0 0 0 8015 1371 8192 29179;29180;29181;29182 43984;43985;43986;43987;43988 43985 5 LSFSGLR LITIVEEVETLRQERLSFSGLRAPVPASEL VETLRQERLSFSGLRAPVPASELLASGVLS R L S L R A 0 1 0 0 0 0 0 1 0 0 2 0 0 1 0 2 0 0 0 0 0 0 7 0 778.43374 Q15149;D3DWL0 Q15149 3440 3446 PLEC;PLEC1 Plectin yes no 2 0.015274 89.673 1 0.67656 0.89953 NaN 1 Median 0.67656 0.89953 NaN 1 0 Median NaN NaN NaN 0 0 Median 16267000 9368600 6898700 16267000 9368600 6898700 0 0 0 8016 1507 8193 29183 43989;43990 43990 2 LSFSHIEK KHAKEGNGFQEETWRLSFSHIEKEILNNHG FQEETWRLSFSHIEKEILNNHGKSKTCCEN R L S E K E 0 0 0 0 0 0 1 0 1 1 1 1 0 1 0 2 0 0 0 0 0 0 8 0 959.50763 Q8N884 Q8N884 377 384 MB21D1 Cyclic GMP-AMP synthase yes yes 2 0.0082624 98.629 3 3 1.0863 1.3848 2.1172 3 Median 1.0863 1.3848 2.1172 3 0 Median NaN NaN NaN 0 0 Median 137170000 77653000 59514000 110340000 50821000 59514000 26831000 26831000 0 8017 1643 8194 29184;29185;29186;29187;29188;29189 43991;43992;43993;43994;43995;43996;43997 43996 7 LSFYETGEIPR TSVFGEKLREQVEERLSFYETGEIPRKNLD VEERLSFYETGEIPRKNLDVMKEAMVQAEE R L S P R K 0 1 0 0 0 0 2 1 0 1 1 0 0 1 1 1 1 0 1 0 0 0 11 0 1310.6507 A8K9K6;O00567;A0PJ92;H0YDU4;H0Y653 A8K9K6 405 415 NOP56 Nucleolar protein 56 yes no 2 1.8314E-07 140.45 4 2 0.59522 0.82762 2.2232 5 Median 0.61902 0.82762 2.223 3 0 Median 0.52333 0.83393 3.0182 2 0 Median 140140000 89272000 50866000 62059000 42999000 19060000 78079000 46272000 31806000 8018 647 8195 29190;29191;29192;29193;29194;29195 43998;43999;44000;44001;44002;44003;44004;44005;44006;44007 44007 10 LSFYETGEIPRK TSVFGEKLREQVEERLSFYETGEIPRKNLD EERLSFYETGEIPRKNLDVMKEAMVQAEEA R L S R K N 0 1 0 0 0 0 2 1 0 1 1 1 0 1 1 1 1 0 1 0 0 0 12 1 1438.7456 A8K9K6;O00567;A0PJ92;H0YDU4;H0Y653 A8K9K6 405 416 NOP56 Nucleolar protein 56 yes no 2;3 5.6131E-05 99.973 7 4 0.66808 0.90315 6.3022 11 Median 0.68359 0.91041 4.3395 7 0 Median 0.49667 0.91127 7.9331 4 0 Linear 596890000 369090000 227800000 363990000 217900000 146100000 232900000 151200000 81700000 8019 647 8196 29196;29197;29198;29199;29200;29201;29202;29203;29204;29205;29206 44008;44009;44010;44011;44012;44013;44014;44015;44016;44017;44018;44019;44020;44021;44022;44023;44024;44025;44026;44027 44027 20 LSGGLGAGSCR GSSGLGGGSSRTSCRLSGGLGAGSCRLGSA TSCRLSGGLGAGSCRLGSAGGLGSTLGGSS R L S C R L 1 1 0 0 1 0 0 4 0 0 2 0 0 0 0 2 0 0 0 0 0 0 11 0 1033.4975 CON__Q04695;Q04695;K7EPJ9;B4E2P9 CON__Q04695 31 41 KRT17 Keratin, type I cytoskeletal 17 yes no 2 0.0093806 50.108 1 0.55006 0.73183 NaN 1 Median 0.55006 0.73183 NaN 1 0 Median NaN NaN NaN 0 0 Median 2756200 1809100 947130 2756200 1809100 947130 0 0 0 + 8020 965 8197 29207 44028 44028 1 LSGGQVLSEYTGPTSADLDHFPSVSQTK IHSSKEKPLVAVNTRLSGGQVLSEYTGPTS TSADLDHFPSVSQTKAEQDSDNKSSTEIPL R L S T K A 1 0 0 2 0 2 1 3 1 0 3 1 0 1 2 5 3 0 1 2 0 0 28 0 2920.409 Q8NCN4 Q8NCN4 484 511 RNF169 E3 ubiquitin-protein ligase RNF169 yes yes 3 4.1909E-05 39.783 1 0.90498 1.1488 NaN 1 Median 0.90498 1.1488 NaN 1 0 Median NaN NaN NaN 0 0 Median 6768900 3131200 3637700 6768900 3131200 3637700 0 0 0 8021 1651 8198 29208 44029;44030 44030 2 LSGLEQPQGALQTR TDELWASLEAAAKRKLSGLEQPQGALQTRR KLSGLEQPQGALQTRRRKKKRPGSTSP___ K L S T R R 1 1 0 0 0 3 1 2 0 0 3 0 0 0 1 1 1 0 0 0 0 0 14 0 1496.7947 Q6RFH5;E9PS41;H0YFP2 Q6RFH5 360 373 WDR74 WD repeat-containing protein 74 yes no 2 1.4532E-49 221.55 4 2 0.72333 1.0853 10.122 6 Median 0.78106 1.0462 11.872 4 0 Median 0.67929 1.0895 0.17824 2 0 Median 191750000 109180000 82569000 103460000 57207000 46253000 88292000 51977000 36316000 8022 1598 8199 29209;29210;29211;29212;29213;29214 44031;44032;44033;44034;44035;44036;44037;44038;44039;44040;44041;44042;44043 44031 13 LSGLNAFDIAEELVK QKAVDQPRQLFWEKKLSGLNAFDIAEELVK LSGLNAFDIAEELVKTMDLPKGLQGVGPGC K L S V K T 2 0 1 1 0 0 2 1 0 1 3 1 0 1 0 1 0 0 0 1 0 0 15 0 1617.8614 O95983;B3KMA8;K7EIE8;A0A087WT34;A0A087X1H1;A0A0A0MTS6 O95983 143 157 MBD3 Methyl-CpG-binding domain protein 3 yes no 2 2.2036E-07 132.79 3 0.91978 1.1564 5.3287 3 Plateau 0.91978 1.1564 5.3287 3 0 Plateau NaN NaN NaN 0 0 Median 16854000 9206700 7647300 16854000 9206700 7647300 0 0 0 8023 1225 8200 29215;29216;29217 44044;44045;44046 44044 3 LSGSNPYTTVTPQIINSK IHKEAQRIAESNHIKLSGSNPYTTVTPQII SNPYTTVTPQIINSKWEKVQQLVPKRDHAL K L S S K W 0 0 2 0 0 1 0 1 0 2 1 1 0 0 2 3 3 0 1 1 0 0 18 0 1919 A0A0S2Z3G9;O43707;Q96BG6;F5GXS2;H7C144 A0A0S2Z3G9 605 622 ACTN4 Alpha-actinin-4 yes no 2 7.6381E-15 130.66 4 0.92772 1.1531 18.806 3 Median 0.92772 1.1531 18.806 3 0 Median NaN NaN NaN 0 0 Median 19399000 10337000 9061600 19399000 10337000 9061600 0 0 0 8024 451 8201 29218;29219;29220;29221 44047;44048;44049;44050;44051 44047 5 LSGTVGVAAVTAGPGLTNTVTAVK ______________________________ VTAGPGLTNTVTAVKNAQMAQSPILLLGGA R L S V K N 4 0 1 0 0 0 0 4 0 0 2 1 0 0 1 1 5 0 0 5 0 0 24 0 2183.2161 M0R1B5;E9PL44;E9PJS0;Q59GP4;M0R026;A1L0T0 M0R1B5 4 27 ILVBL Acetolactate synthase-like protein yes no 2 8.6796E-23 137.39 1 0.54147 0.66615 NaN 1 Median 0.54147 0.66615 NaN 1 0 Median NaN NaN NaN 0 0 Median 1419200 919910 499270 1419200 919910 499270 0 0 0 8025 534 8202 29222 44052 44052 1 LSHETVTIELK ______________________________ FLMKLSHETVTIELKNGTQVHGTITGVDVS K L S L K N 0 0 0 0 0 0 2 0 1 1 2 1 0 0 0 1 2 0 0 1 0 0 11 0 1268.6976 P62314;J3QLR7 P62314 10 20 SNRPD1 Small nuclear ribonucleoprotein Sm D1 yes no 2;3 1.608E-05 114.5 3 0.70684 0.89928 15.099 3 Median 0.70684 0.89928 15.099 3 0 Median NaN NaN NaN 0 0 Median 25880000 15548000 10332000 25880000 15548000 10332000 0 0 0 8026 1407 8203 29223;29224;29225 44053;44054;44055 44055 3 LSHNVNLQQK LGYGYPFGGSYYGCRLSHNVNLQQKPCAYH YYGCRLSHNVNLQQKPCAYHPGDKYPEPSG R L S Q K P 0 0 2 0 0 2 0 0 1 0 2 1 0 0 0 1 0 0 0 1 0 0 10 0 1179.636 P31276 P31276 134 143 HOXC13 Homeobox protein Hox-C13 yes yes 2 0.0049477 96.665 1 0.67325 0.84047 NaN 1 Median 0.67325 0.84047 NaN 1 0 Median NaN NaN NaN 0 0 Median 1054700 637310 417390 1054700 637310 417390 0 0 0 8027 1308 8204 29226 44056 44056 1 LSHPLLEQLLPALR RCSVFKCLPMILDNKLSHPLLEQLLPALRY KLSHPLLEQLLPALRYSLHDNSEKVRVAFV K L S L R Y 1 1 0 0 0 1 1 0 1 0 6 0 0 0 2 1 0 0 0 0 0 0 14 0 1598.9508 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5 Q86XI2 452 465 NCAPG2 Condensin-2 complex subunit G2 yes no 3 3.1307E-10 109.15 4 2 0.71725 0.97062 17.765 6 Median 0.75708 1.0155 16.066 4 0 Median 0.54937 0.84998 5.9999 2 0 Median 160790000 96224000 64569000 112290000 65378000 46910000 48506000 30847000 17660000 8028 1621 8205 29227;29228;29229;29230;29231;29232 44057;44058;44059;44060;44061;44062;44063;44064;44065;44066;44067;44068 44063 12 LSHYLQK PSPPYFGLLLASVGRLSHYLQKGCRLSPRD LLLASVGRLSHYLQKGCRLSPRDTYSDRSG R L S Q K G 0 0 0 0 0 1 0 0 1 0 2 1 0 0 0 1 0 0 1 0 0 0 7 0 887.4865 P17812;B4E1E0 P17812 551 557 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.041246 53.576 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4399900 4399900 0 4399900 4399900 0 0 0 0 8029 1278 8206 29233 44069 44069 1 LSIFDANESGFESYEALPQHK PPDAVDEPQMLTNEKLSIFDANESGFESYE NESGFESYEALPQHKLTCFSVYCKHGHLCP K L S H K L 2 0 1 1 0 1 3 1 1 1 2 1 0 2 1 3 0 0 1 0 0 0 21 0 2381.1176 A0A024R7E3;P26358;Q59FP7;I6L9H2 A0A024R7E3 448 468 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 no no 3 1.9442E-09 111.65 3 0.40974 0.50034 7.4322 3 Median 0.40974 0.50034 7.4322 3 0 Median NaN NaN NaN 0 0 Median 43759000 31315000 12443000 43759000 31315000 12443000 0 0 0 8030 176;1129 8207 29234;29235;29236 44070;44071;44072 44070 3 LSILYPATTGR TARVVFVFGPDKKLKLSILYPATTGRNFDE KKLKLSILYPATTGRNFDEILRVVISLQLT K L S G R N 1 1 0 0 0 0 0 1 0 1 2 0 0 0 1 1 2 0 1 0 0 0 11 0 1190.6659 V9HWC7;P30041 V9HWC7 145 155 HEL-S-128m;PRDX6 Peroxiredoxin-6 yes no 2 0.0121 55.549 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5323600 5323600 0 5323600 5323600 0 0 0 0 8031 1304 8208 29237 44073 44073 1 LSINKPTSERK GLYTPQTKEKPTFGKLSINKPTSERKVSLF TFGKLSINKPTSERKVSLFGKRTSGHGSRN K L S R K V 0 1 1 0 0 0 1 0 0 1 1 2 0 0 1 2 1 0 0 0 0 0 11 2 1271.7197 A8K031;O14777;Q05DQ6;I3L4G3 A8K031 43 53 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 3 0.0021233 97.734 1 0.51548 0.64237 NaN 1 Median 0.51548 0.64237 NaN 1 0 Median NaN NaN NaN 0 0 Median 2383900 1597000 786930 2383900 1597000 786930 0 0 0 8032 574 8209 29238 44074 44074 1 LSINTQLLAR ALRLVAKPGDKLYCRLSINTQLLARVDHLM KLYCRLSINTQLLARVDHLMKVGKNNFRPP R L S A R V 1 1 1 0 0 1 0 0 0 1 3 0 0 0 0 1 1 0 0 0 0 0 10 0 1127.6663 A8K9K8;Q9UNQ2;A0A0C4DGB1;B4DRY2 A8K9K8 175 184 DIMT1 Probable dimethyladenosine transferase yes no 2 1.2366E-07 123.72 4 0.89396 1.2136 22.887 4 Median 0.89396 1.2136 22.887 4 0 Median NaN NaN NaN 0 0 Median 26019000 12822000 13197000 26019000 12822000 13197000 0 0 0 8033 648 8210 29239;29240;29241;29242 44075;44076;44077;44078;44079 44078 5 LSIPTYGLQCTR PIEGSTTVFHSLASRLSIPTYGLQCTRAAP ASRLSIPTYGLQCTRAAPLDSIHSLAAYYI R L S T R A 0 1 0 0 1 1 0 1 0 1 2 0 0 0 1 1 2 0 1 0 0 0 12 0 1407.718 A0A0U1RQF0;P49327;J3KTF0 A0A0U1RQF0 2262 2273 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.045845 39.917 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3838900 3838900 0 3838900 3838900 0 0 0 0 8034 486 8211 29243 44080 44080 1 LSIQDNNVDLILATPPFSR AVLSPQRLVLETLSKLSIQDNNVDLILATP DNNVDLILATPPFSRLEKLYSTMVRFLSDR K L S S R L 1 1 2 2 0 1 0 0 0 2 3 0 0 1 2 2 1 0 0 1 0 0 19 0 2112.1215 A0A0S2Q0B1;O14497;Q96T01;Q96SM7;Q8NC65;H0Y488;A0A1B0GTU5;Q96SY8;A4FU79;A0A1B0GTI6;Q9NWF5;B4DYC0;A0A1B0GV63;A0A1B0GWJ2;A0A1B0GTJ8;A0A1B0GVK1;H0Y7H8;Q8NFD5 A0A0S2Q0B1 2125 2143 ARID1A;ARID1B AT-rich interactive domain-containing protein 1A;AT-rich interactive domain-containing protein 1B yes no 2 0.0050731 47.217 2 0.96702 1.3121 9.8264 2 Median 0.96702 1.3121 9.8264 2 0 Median NaN NaN NaN 0 0 Median 2985700 1623500 1362200 2985700 1623500 1362200 0 0 0 8035 447 8212 29244;29245 44081;44082 44082 2 LSIVPVR KEVATAIRGAIILAKLSIVPVRRGYWGNKI RGAIILAKLSIVPVRRGYWGNKIGKPHTVP K L S V R R 0 1 0 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 2 0 0 7 0 782.50142 P15880;Q8J014;Q8N5L9;Q6IPX5;Q3KQT6;H0YEN5;I3L404;E9PMM9;E9PPT0;Q8NI61;E9PM36;A4D0Y7 P15880 160 166 RPS2;rps2;OK/KNS-cl.7;LOC392781 40S ribosomal protein S2 yes no 2 0.014992 91.584 1 0.73194 1.0158 NaN 1 Median 0.73194 1.0158 NaN 1 0 Median NaN NaN NaN 0 0 Median 58130000 32498000 25632000 58130000 32498000 25632000 0 0 0 8036 1269 8213 29246 44083;44084 44084 2 LSIVPVRR KEVATAIRGAIILAKLSIVPVRRGYWGNKI GAIILAKLSIVPVRRGYWGNKIGKPHTVPC K L S R R G 0 2 0 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 2 0 0 8 1 938.60253 P15880;Q8J014;Q8N5L9;Q6IPX5;Q3KQT6;H0YEN5;I3L404;E9PMM9;E9PPT0;Q8NI61;E9PM36;A4D0Y7 P15880 160 167 RPS2;rps2;OK/KNS-cl.7;LOC392781 40S ribosomal protein S2 yes no 2;3 0.002075 117.93 8 4 0.67154 0.91624 27.714 12 Median 0.69279 0.95504 15.853 8 0 Median 0.39595 0.60778 5.3504 4 0 Median 1438000000 839590000 598430000 1303600000 745970000 557670000 134380000 93618000 40761000 8037 1269 8214 29247;29248;29249;29250;29251;29252;29253;29254;29255;29256;29257;29258 44085;44086;44087;44088;44089;44090;44091;44092;44093;44094;44095;44096;44097;44098;44099;44100;44101;44102;44103;44104 44093 20 LSIYNALK ANVIAGVWLEEAGQKLSIYNALKKDLLPSD LEEAGQKLSIYNALKKDLLPSDMAVALLEA K L S L K K 1 0 1 0 0 0 0 0 0 1 2 1 0 0 0 1 0 0 1 0 0 0 8 0 920.53312 Q15149;D3DWL0 Q15149 3175 3182 PLEC;PLEC1 Plectin yes no 2 0.012359 68.787 2 0.65638 0.80198 16.976 2 Median 0.65638 0.80198 16.976 2 0 Median NaN NaN NaN 0 0 Median 53578000 29633000 23945000 53578000 29633000 23945000 0 0 0 8038 1507 8215 29259;29260 44105;44106 44105 2 LSLAEIYEQEYIK YEYKKRLTLDHEKSKLSLAEIYEQEYIKLN SKLSLAEIYEQEYIKLNQQKTAEEENPEHV K L S I K L 1 0 0 0 0 1 3 0 0 2 2 1 0 0 0 1 0 0 2 0 0 0 13 0 1597.8239 B3KPV5;O00566 B3KPV5 467 479 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 2 2.0159E-12 185.18 2 1 0.97445 1.2327 4.6424 2 Median 0.97445 1.2327 4.6424 2 0 Median NaN NaN NaN 0 0 Median 70362000 25398000 44964000 49709000 25398000 24310000 20653000 0 20653000 8039 767 8216 29261;29262;29263 44107;44108;44109;44110 44109 4 LSLDGQNIYNACCTLR ALLQYADPVSAQHAKLSLDGQNIYNACCTL SLDGQNIYNACCTLRIDFSKLTSLNVKYNN K L S L R I 1 1 2 1 2 1 0 1 0 1 3 0 0 0 0 1 1 0 1 0 0 0 16 0 1896.8822 A6NLN1;A0A0U1RRM4;P26599;K7EK45;Q59H49;A0A087WU68 A6NLN1 209 224 PTBP1 Polypyrimidine tract-binding protein 1 yes no 2 2.8474E-54 204.48 4 0.37373 0.50032 15.471 3 Median 0.37373 0.50032 15.471 3 0 Median NaN NaN NaN 0 0 Median 18902000 13706000 5195900 18902000 13706000 5195900 0 0 0 8040 489 8217 29264;29265;29266;29267 44111;44112;44113;44114;44115;44116;44117 44113 7 LSLDVEQAPSGQHSQAQLSGQQQR WEEQLARLLQEAPGKLSLDVEQAPSGQHSQ SGQHSQAQLSGQQQRLLAFFKCCLLTDQLP K L S Q R L 2 1 0 1 0 7 1 2 1 0 3 0 0 0 1 4 0 0 0 1 0 0 24 0 2591.2688 B4DZE5;O00411;Q59E91;Q4G0F4;K7EMH3 B4DZE5 202 225 POLRMT DNA-directed RNA polymerase, mitochondrial;DNA-directed RNA polymerase yes no 3 0.00012663 71.651 3 0.77301 1.0433 32.809 2 Median 0.77301 1.0433 32.809 2 0 Median NaN NaN NaN 0 0 Median 26346000 17842000 8504200 26346000 17842000 8504200 0 0 0 8041 876 8218 29268;29269;29270 44118;44119;44120;44121;44122 44119 5 LSLEGDHSTPPSAYGSVK ______________________________ EGDHSTPPSAYGSVKAYTNFDAERDALNIE K L S V K A 1 0 0 1 0 0 1 2 1 0 2 1 0 0 2 4 1 0 1 1 0 0 18 0 1843.8952 H0YKS4;H0YMD0;H0YMU9;H0YN42;V9HW65;A0A024R5Z7;P07355;H0YMM1;B4DNH8;A6NMY6;H0YKL9;H0YKZ7;H0YLV6;H0YMT9;H0YKX9;H0YMW4;H0YKV8;H0YMD9;H0YNB8;H0YKN4 H0YKS4 11 28 ANXA2;HEL-S-270;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 3 0.00038305 78.441 3 0.4547 0.58866 13.996 3 Median 0.4547 0.58866 13.996 3 0 Median NaN NaN NaN 0 0 Median 25529000 16024000 9504500 25529000 16024000 9504500 0 0 0 8042 153 8219 29271;29272;29273 44123;44124;44125;44126 44123 4 LSLELFGR MGMVISHDMLLGRWRLSLELFGRVFMEDVG MLLGRWRLSLELFGRVFMEDVGAEPGSILT R L S G R V 0 1 0 0 0 0 1 1 0 0 3 0 0 1 0 1 0 0 0 0 0 0 8 0 933.52837 E7EMW7;O95071;E5RFK7 E7EMW7 2185 2192 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 2 0.0020996 116.88 1 0.52203 0.7145 NaN 1 Median 0.52203 0.7145 NaN 1 0 Median NaN NaN NaN 0 0 Median 1468500 966270 502210 1468500 966270 502210 0 0 0 8043 1008 8220 29274 44127 44127 1 LSLGTYASLHGR VFHISCFRCSYCNNKLSLGTYASLHGRIYC NNKLSLGTYASLHGRIYCKPHFNQLFKSKG K L S G R I 1 1 0 0 0 0 0 2 1 0 3 0 0 0 0 2 1 0 1 0 0 0 12 0 1273.6779 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2 F8VQE1 263 274 LIMA1 LIM domain and actin-binding protein 1 yes no 2;3 1.3261E-11 122.26 6 0.69915 0.95538 9.7319 5 Median 0.69915 0.95538 9.7319 5 0 Median NaN NaN NaN 0 0 Median 234050000 145220000 88827000 234050000 145220000 88827000 0 0 0 8044 834 8221 29275;29276;29277;29278;29279;29280 44128;44129;44130;44131;44132;44133;44134 44132 7 LSLHVLSATQAER LCAAVEQGFTQPLRRLSLHVLSATQAERLA RRLSLHVLSATQAERLARAEEAAPAAPPGP R L S E R L 2 1 0 0 0 1 1 0 1 0 3 0 0 0 0 2 1 0 0 1 0 0 13 0 1423.7783 A0A0C4DGV8;A0A1S5UZH6;Q13214;B4DEK9;Q59FY7;Q6PI51 A0A0C4DGV8 663 675 SEMA3B Semaphorin-3B yes no 3 0.021488 69.846 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1811200 1811200 0 1811200 1811200 0 0 0 0 8045 430 8222 29281 44135 44135 1 LSLINFR DQKILLLLRAYEQNKLSLINFRVLLWGPAA LRAYEQNKLSLINFRVLLWGPAAVEHHKTC K L S F R V 0 1 1 0 0 0 0 0 0 1 2 0 0 1 0 1 0 0 0 0 0 0 7 0 861.50724 O60287 O60287 1556 1562 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.039532 88.643 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8046 1190 8223 29282;29283 44136;44137 44137 2 LSLITAPR HQELVEIPTRPLLTKLSLITAPRRERGRPS TRPLLTKLSLITAPRRERGRPSLYVQRDIV K L S P R R 1 1 0 0 0 0 0 0 0 1 2 0 0 0 1 1 1 0 0 0 0 0 8 0 869.53345 Q8IVT2 Q8IVT2 334 341 MISP Mitotic interactor and substrate of PLK1 yes yes 2 0.0037935 100.39 1 0.47587 0.63702 NaN 1 Median 0.47587 0.63702 NaN 1 0 Median NaN NaN NaN 0 0 Median 17409000 11648000 5761000 17409000 11648000 5761000 0 0 0 8047 1624 8224 29284 44138 44138 1 LSLLEEYGCCK AVTYIDEKRDFRTYRLSLLEEYGCCKELAS RTYRLSLLEEYGCCKELASRLRYARTMVDK R L S C K E 0 0 0 0 2 0 2 1 0 0 3 1 0 0 0 1 0 0 1 0 0 0 11 0 1370.621 B2R841;P53350;B4E083;Q59GD0;D3DWF3 B2R841 564 574 PLK1 Serine/threonine-protein kinase PLK;Serine/threonine-protein kinase PLK1 yes no 2 1.5072E-06 116.3 3 0.69374 0.87806 6.0524 3 Median 0.69374 0.87806 6.0524 3 0 Median NaN NaN NaN 0 0 Median 27577000 14995000 12582000 27577000 14995000 12582000 0 0 0 8048 714 8225 29285;29286;29287 44139;44140;44141;44142 44141 4 LSLLLNDISR RELEMIGFIENNVSKLSLLLNDISRKSEGL NNVSKLSLLLNDISRKSEGLSGRVLRKLPF K L S S R K 0 1 1 1 0 0 0 0 0 1 4 0 0 0 0 2 0 0 0 0 0 0 10 0 1142.6659 Q15645 Q15645 369 378 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 2 3.6103E-10 173.39 5 2 0.32811 0.43665 148.17 4 Median 0.32545 0.43224 4.4515 3 0 Median 5.8709 8.2397 NaN 1 0 Median 75638000 49028000 26609000 57571000 47681000 9890400 18066000 1347200 16719000 8049 1514 8226 29288;29289;29290;29291;29292;29293;29294 44143;44144;44145;44146;44147;44148;44149;44150;44151;44152 44146 10 LSLLNGGLQEEELSTSLK IWLDSKQIRQEEMKKLSLLNGGLQEEELST LNGGLQEEELSTSLKRSVYIESRIGTSTSF K L S L K R 0 0 1 0 0 1 3 2 0 0 6 1 0 0 0 3 1 0 0 0 0 0 18 0 1930.0259 O95235 O95235 225 242 KIF20A Kinesin-like protein KIF20A yes yes 2 3.834E-62 216 5 1 0.7934 1.0018 19.141 5 Median 0.84143 1.0634 11.899 4 0 Median 0.47548 0.74737 NaN 1 0 Median 68948000 40557000 28391000 30681000 16461000 14220000 38267000 24096000 14172000 8050 1215 8227 29295;29296;29297;29298;29299;29300 44153;44154;44155;44156;44157;44158;44159;44160 44155 8 LSLLNGGLQEEELSTSLKR IWLDSKQIRQEEMKKLSLLNGGLQEEELST NGGLQEEELSTSLKRSVYIESRIGTSTSFD K L S K R S 0 1 1 0 0 1 3 2 0 0 6 1 0 0 0 3 1 0 0 0 0 0 19 1 2086.127 O95235 O95235 225 243 KIF20A Kinesin-like protein KIF20A yes yes 3 2.517E-05 88.637 3 2 0.73271 0.94127 31.056 3 Median 0.77927 1.0237 11.879 2 0 Median 0.39442 0.60995 NaN 1 0 Median 27942000 19803000 8139400 13181000 7954500 5226900 14761000 11848000 2912500 8051 1215 8228 29301;29302;29303;29304;29305 44161;44162;44163;44164;44165;44166;44167 44165 7 LSLNNGSITHLVIRPNGR IVCRALQFPPEGWLRLSLNNGSITHLVIRP NNGSITHLVIRPNGRVALRTLGDTGFMPPD R L S G R V 0 2 3 0 0 0 0 2 1 2 3 0 0 0 1 2 1 0 0 1 0 0 18 1 1960.0966 Q96HS1;F5GXG4 Q96HS1 252 269 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 4 0.0048659 37.083 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4271500 4271500 0 4271500 4271500 0 0 0 0 8052 1688 8229 29306 44168 44168 1 LSLQESESK TKSSEQSRSVNIASKLSLQESESKRRCRKR VNIASKLSLQESESKRRCRKRQSPEPSPVT K L S S K R 0 0 0 0 0 1 2 0 0 0 2 1 0 0 0 3 0 0 0 0 0 0 9 0 1019.5135 D3DS96;Q9NRL2;Q59G54 D3DS96 1396 1404 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A no no 2 0.010226 63.227 2 0.57262 0.81665 4.7254 2 Median NaN NaN NaN 0 0 Median 0.57262 0.81665 4.7254 2 0 Median 11043000 6890100 4153300 0 0 0 11043000 6890100 4153300 8053 979 8230 29307;29308 44169;44170 44169 2 LSLQVVNR SWRKKNDCTKIKAIRLSLQVVNREIREENK TKIKAIRLSLQVVNREIREENKLYKRTALA R L S N R E 0 1 1 0 0 1 0 0 0 0 2 0 0 0 0 1 0 0 0 2 0 0 8 0 927.55016 Q8IZT6;Q4G1H2;Q4G1H0;A0A087WV76;Q5VYL4 Q8IZT6 3234 3241 ASPM Abnormal spindle-like microcephaly-associated protein yes no 2 0.0048857 79.597 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1864000 0 1864000 1864000 0 1864000 0 0 0 8054 1631 8231 29309 44171 44171 1 LSLSNAISTALPLTQLR VTGLKLQGATCNNNKLSLSNAISTALPLTQ LSNAISTALPLTQLRWVKQTNTEKKASVVT K L S L R W 2 1 1 0 0 1 0 0 0 1 5 0 0 0 1 3 2 0 0 0 0 0 17 0 1797.036 Q14204 Q14204 4575 4591 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 4.9371E-14 149.69 4 0.51446 0.70075 4.3025 4 Median 0.51446 0.70075 4.3025 4 0 Median NaN NaN NaN 0 0 Median 27951000 17974000 9977000 27951000 17974000 9977000 0 0 0 8055 1483 8232 29310;29311;29312;29313 44172;44173;44174;44175;44176;44177;44178 44175 7 LSLVAVSNSVPQDICCMAADGR TTCVGKSFHTYDVQKLSLVAVSNSVPQDIC NSVPQDICCMAADGRLVFAAYGNVFSAFAR K L S G R L 3 1 1 2 2 1 0 1 0 1 2 0 1 0 1 3 0 0 0 3 0 0 22 0 2362.1079 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 58 79 WDR36 WD repeat-containing protein 36 yes no 2 2.6985E-08 115.04 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 336100 336100 0 336100 336100 0 0 0 0 8056 404 8233 29314 44179 44179 1 LSMMLLDSR DVTASTYHQVQHEARLSMMLLDSRADDGFH VQHEARLSMMLLDSRADDGFHLLLMTPKPM R L S S R A 0 1 0 1 0 0 0 0 0 0 3 0 2 0 0 2 0 0 0 0 0 0 9 0 1064.5358 Q9H6R4;A0A0A0MRW6;B4DF80 Q9H6R4 443 451 NOL6 Nucleolar protein 6 yes no 2 0.010746 46.462 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11016000 11016000 0 0 0 0 11016000 11016000 0 8057 1738 8234 29315;29316 44180;44181 44180 793;794 2 LSMSQLNEK NCNLICGDEYGPETRLSMSQLNEKETPFEL YGPETRLSMSQLNEKETPFELIEALLKYIE R L S E K E 0 0 1 0 0 1 1 0 0 0 2 1 1 0 0 2 0 0 0 0 0 0 9 0 1048.5223 Q08211 Q08211 622 630 DHX9 ATP-dependent RNA helicase A yes yes 2 0.023582 90.601 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5893200 0 5893200 5893200 0 5893200 0 0 0 8058 1448 8235 29317;29318 44182;44183 44182 2 LSNIFVIGK VVHVKDANGNSFATRLSNIFVIGKGNKPWI NSFATRLSNIFVIGKGNKPWISLPRGKGIR R L S G K G 0 0 1 0 0 0 0 1 0 2 1 1 0 1 0 1 0 0 0 1 0 0 9 0 989.59097 B2R491;P62701;Q96IR1;Q53HV1 B2R491 222 230 RPS4X 40S ribosomal protein S4;40S ribosomal protein S4, X isoform yes no 2 2.5641E-05 109.48 1 0.58387 0.93813 NaN 1 Median NaN NaN NaN 0 0 Median 0.58387 0.93813 NaN 1 0 Median 88840000 56240000 32600000 0 0 0 88840000 56240000 32600000 8059 681 8236 29319 44184 44184 0 LSNIVLK LTQVCGDVLSTCEHRLSNIVLKENGTGNMD VLSTCEHRLSNIVLKENGTGNMDEDLLVKY R L S L K E 0 0 1 0 0 0 0 0 0 1 2 1 0 0 0 1 0 0 0 1 0 0 7 0 785.50109 P42695;G3V1A9 P42695 835 841 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.034389 87.754 3 0.76106 0.94405 8.1744 2 Median 0.76106 0.94405 8.1744 2 0 Median NaN NaN NaN 0 0 Median 41445000 25913000 15532000 41445000 25913000 15532000 0 0 0 8060 1338 8237 29320;29321;29322 44185;44186;44187;44188 44187 4 LSNLPTVDPIAVCHELYNTIR HHSVSTPGPSRKRRRLSNLPTVDPIAVCHE VDPIAVCHELYNTIRDYKDEQGRLLCELFI R L S I R D 1 1 2 1 1 0 1 0 1 2 3 0 0 0 2 1 2 0 1 2 0 0 21 0 2424.2471 Q86U86;E7EVG2;C9JPI5;C9JCJ2;C9J053;C9JQF1 Q86U86 38 58 PBRM1 Protein polybromo-1 yes no 3 0.00015774 69.361 2 0.71416 0.97976 12.129 2 Median 0.71416 0.97976 12.129 2 0 Median NaN NaN NaN 0 0 Median 11054000 6230900 4823200 11054000 6230900 4823200 0 0 0 8061 1620 8238 29323;29324 44189;44190;44191;44192 44189 4 LSNVNLQEK GRMSSKPINFSVILKLSNVNLQEKAYRDGL FSVILKLSNVNLQEKAYRDGLVEQLYDLTL K L S E K A 0 0 2 0 0 1 1 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 9 0 1043.5611 Q9Y3T9;B3KNC3;Q9H9J5 Q9Y3T9 508 516 NOC2L Nucleolar complex protein 2 homolog yes no 2 4.9268E-09 162.97 5 0.80402 1.0047 8.7985 3 Plateau 0.80402 1.0047 8.7985 3 0 Plateau NaN NaN NaN 0 0 Median 83604000 43833000 39772000 83604000 43833000 39772000 0 0 0 8062 1820 8239 29325;29326;29327;29328;29329 44193;44194;44195;44196;44197 44196 5 LSPPSSSAASSYSFSDLNSTR LYEKKIFEYETQRRRLSPPSSSAASSYSFS SAASSYSFSDLNSTRGDADMYDLPKKEDAL R L S T R G 2 1 1 1 0 0 0 0 0 0 2 0 0 1 2 9 1 0 1 0 0 0 21 0 2159.9971 P50402 P50402 48 68 EMD Emerin yes yes 2 0.0013497 60.158 1 0.20619 0.28985 NaN 1 Median 0.20619 0.28985 NaN 1 0 Median NaN NaN NaN 0 0 Median 1903700 1516900 386820 1903700 1516900 386820 0 0 0 8063 1357 8240 29330 44198 44198 1 LSPPYSSPQEFAQDVGR GTLDLTLIRARLQEKLSPPYSSPQEFAQDV PPYSSPQEFAQDVGRMFKQFNKLTEDKADV K L S G R M 1 1 0 1 0 2 1 1 0 0 1 0 0 1 3 3 0 0 1 1 0 0 17 0 1876.8955 B2R8R5;Q13263;M0R0K9 B2R8R5 751 767 TRIM28 Transcription intermediary factor 1-beta yes no 2 8.5154E-05 98.592 4 2 0.84002 1.182 119.66 4 Median 0.30401 0.40612 10.995 2 0 Median 2.1672 3.2169 1.5077 2 0 Median 83938000 48139000 35798000 54180000 38182000 15998000 29757000 9957500 19800000 8064 716 8241 29331;29332;29333;29334;29335;29336 44199;44200;44201;44202;44203;44204;44205;44206 44200 8 LSPTDNLPR LSEQQLQLWPSDVDKLSPTDNLPRGSRAHI PSDVDKLSPTDNLPRGSRAHITLGCAADVE K L S P R G 0 1 1 1 0 0 0 0 0 0 2 0 0 0 2 1 1 0 0 0 0 0 9 0 1011.5349 B4DFN6;B4DI06;A0A024R1T5;P09543 B4DFN6 82 90 CNP 2,3-cyclic-nucleotide 3-phosphodiesterase yes no 2 0.022985 53.775 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3151600 3151600 0 3151600 3151600 0 0 0 0 8065 68 8242 29337 44207;44208 44208 2 LSPVPVPR RAASAIYRLFDYRGRLSPVPVPRAVPVKRP LFDYRGRLSPVPVPRAVPVKRPRVTVPLVR R L S P R A 0 1 0 0 0 0 0 0 0 0 1 0 0 0 3 1 0 0 0 2 0 0 8 0 863.52289 A8K4T9;Q53GL6;Q9UKM9;Q5QPL9;Q5QPM0;Q5QPM1 A8K4T9 118 125 RALY RNA-binding protein Raly yes no 2 0.045038 71.296 1 0.51244 0.69947 NaN 1 Median 0.51244 0.69947 NaN 1 0 Median NaN NaN NaN 0 0 Median 6907300 4628200 2279100 6907300 4628200 2279100 0 0 0 8066 608 8243 29338 44209 44209 1 LSQEQVDNFTLDINTAYAR NLSEKLSEQELQFRRLSQEQVDNFTLDINT QVDNFTLDINTAYARLRGIEQAVQSHAVAE R L S A R L 2 1 2 2 0 2 1 0 0 1 2 0 0 1 0 1 2 0 1 1 0 0 19 0 2197.0651 B4DS66;C9J406;H7C463;Q16891;B9A067;B4DQY2;B4DKR1;B4DT20 Q16891 527 545 IMMT MICOS complex subunit MIC60 no no 2 2.1237E-31 175.01 3 2 0.91754 1.3126 49.33 4 Median 0.65998 0.89971 7.1463 2 0 Median 1.3683 2.0678 17.999 2 0 Median 46876000 19068000 27808000 12497000 7102100 5395300 34378000 11966000 22413000 8067 1524;854 8244 29339;29340;29341;29342;29343 44210;44211;44212;44213;44214;44215;44216 44212 7 LSQERPGVLLNQFPCENLLTVK ADILFNFSHFKDYRKLSQERPGVLLNQFPC VLLNQFPCENLLTVKDCLASIARRAGGPEG K L S V K D 0 1 2 0 1 2 2 1 0 0 5 1 0 1 2 1 1 0 0 2 0 0 22 1 2554.3577 A0A024R4U3;Q14166 A0A024R4U3 347 368 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes no 3 8.3097E-06 86.539 3 0.63889 0.83654 22.222 3 Plateau 0.63889 0.83654 22.222 3 0 Plateau NaN NaN NaN 0 0 Median 18861000 11842000 7019200 18861000 11842000 7019200 0 0 0 8068 127 8245 29344;29345;29346 44217;44218;44219 44218 3 LSQILTDFPK YMRKVKFTQQNYHDRLSQILTDFPKLDDIH NYHDRLSQILTDFPKLDDIHPFYADLMNIL R L S P K L 0 0 0 1 0 1 0 0 0 1 2 1 0 1 1 1 1 0 0 0 0 0 10 0 1160.6441 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;O60747;Q5T3R7 Q53GS0 62 71 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 3.461E-28 191.85 4 3 0.74962 1.0253 7.3627 6 Median 0.78716 1.0117 9.3735 4 0 Median 0.65898 1.04 0.7557 2 0 Median 326510000 182510000 144000000 261960000 145000000 116950000 64551000 37507000 27044000 8069 975 8246 29347;29348;29349;29350;29351;29352;29353 44220;44221;44222;44223;44224;44225;44226;44227;44228;44229;44230;44231 44226 12 LSQLEEHLSQLQDNPPQEK DKKCLEEKNEILQGKLSQLEEHLSQLQDNP EEHLSQLQDNPPQEKGEVLGDVLQLETLKQ K L S E K G 0 0 1 1 0 4 3 0 1 0 4 1 0 0 2 2 0 0 0 0 0 0 19 0 2232.1022 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 387 405 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 8.1402E-16 133.35 3 0.73172 0.84699 8.9973 3 Plateau 0.73172 0.84699 8.9973 3 0 Plateau NaN NaN NaN 0 0 Median 118590000 67797000 50791000 118590000 67797000 50791000 0 0 0 8070 148;1499;590 8247 29354;29355;29356 44232;44233;44234;44235 44232 4 LSQLEGVNVER ERQELRILVGTNLVRLSQLEGVNVERYKQI NLVRLSQLEGVNVERYKQIVLTGILEQVVN R L S E R Y 0 1 1 0 0 1 2 1 0 0 2 0 0 0 0 1 0 0 0 2 0 0 11 0 1242.6568 Q53FR4;Q96QK1;Q5HYM2 Q53FR4 227 237 VPS35;DKFZp686O2462 Vacuolar protein sorting-associated protein 35 yes no 2 0.0054172 61.56 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1278700 1278700 0 1278700 1278700 0 0 0 0 8071 1539 8248 29357 44236 44236 1 LSQNISELK FKEHLQVFWDGSFWKLSQNISELKDGELWN DGSFWKLSQNISELKDGELWNKFFVRILNA K L S L K D 0 0 1 0 0 1 1 0 0 1 2 1 0 0 0 2 0 0 0 0 0 0 9 0 1030.5659 O60566;H3BTB9 O60566 980 988 BUB1B;PAK6 Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes no 2 0.011716 60.91 1 0.77745 1.0053 NaN 1 Median 0.77745 1.0053 NaN 1 0 Median NaN NaN NaN 0 0 Median 5869800 2785200 3084600 5869800 2785200 3084600 0 0 0 8072 1191 8249 29358 44237 44237 1 LSQNNFALGYK WLAGYQMSFDTAKSKLSQNNFALGYKAADF AKSKLSQNNFALGYKAADFQLHTHVNDGTE K L S Y K A 1 0 2 0 0 1 0 1 0 0 2 1 0 1 0 1 0 0 1 0 0 0 11 0 1253.6404 Q9Y277 Q9Y277 164 174 VDAC3 Voltage-dependent anion-selective channel protein 3 yes yes 2 1.8511E-06 131.06 5 0.62147 0.78923 6.4472 4 Median 0.62147 0.78923 6.4472 4 0 Median NaN NaN NaN 0 0 Median 232110000 143460000 88653000 232110000 143460000 88653000 0 0 0 8073 1803 8250 29359;29360;29361;29362;29363 44238;44239;44240;44241;44242;44243;44244 44242 7 LSQPAAGGVLTCEAELGVEACR KQALSSHMYSASLLRLSQPAAGGVLTCEAE GVLTCEAELGVEACRLTDTDAAIAEDPPDA R L S C R L 4 1 0 0 2 1 3 3 0 0 3 0 0 0 1 1 1 0 0 2 0 0 22 0 2287.0937 B4DYG2;O43683;A0JLU2;A8K5A6 B4DYG2 658 679 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 yes no 2 7.4272E-19 128.99 3 0.73055 1.0269 NaN 1 Median 0.73055 1.0269 NaN 1 0 Median NaN NaN NaN 0 0 Median 2605600 994130 1611400 2605600 994130 1611400 0 0 0 8074 873 8251 29364;29365;29366 44245;44246;44247;44248 44246 4 LSQVSDSVSGQTVVDPK MRKIGQARNTLMDMRLSQVSDSVSGQTVVD QVSDSVSGQTVVDPKGYLTDLNSMIPTHGG R L S P K G 0 0 0 2 0 2 0 1 0 0 1 1 0 0 1 4 1 0 0 4 0 0 17 0 1744.8843 O94906 O94906 255 271 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 1.7544E-08 113.43 3 1 0.59347 0.74847 46.355 4 Median 0.58693 0.7441 8.4112 3 0 Median 1.1844 1.7837 NaN 1 0 Median 31616000 17367000 14248000 23597000 13487000 10110000 8018500 3880100 4138400 8075 1212 8252 29367;29368;29369;29370 44249;44250;44251;44252;44253;44254 44249 6 LSQYLDSSQVK DQWEARCGLALALNKLSQYLDSSQVKPLFQ ALNKLSQYLDSSQVKPLFQFFVPDALNDRH K L S V K P 0 0 0 1 0 2 0 0 0 0 2 1 0 0 0 3 0 0 1 1 0 0 11 0 1266.6456 E1NZA1;Q92616;A0A024RBS1 E1NZA1 1244 1254 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.0011969 88.056 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10865000 3778000 7087400 3778000 3778000 0 7087400 0 7087400 8076 1000 8253 29371;29372;29373;29374 44255;44256;44257;44258 44258 4 LSSARPGGLGSSSLYGLGASR TSRSAAFSGRGAQVRLSSARPGGLGSSSLY GGLGSSSLYGLGASRPRVAVRSAYGGPVGA R L S S R P 2 2 0 0 0 0 0 5 0 0 4 0 0 0 1 6 0 0 1 0 0 0 21 1 1992.0389 CON__P08729;CON__Q3KNV1;P08729;B3KY79 CON__Q3KNV1 26 46 KRT7 Keratin, type II cytoskeletal 7 no no 3 0.0038515 22.902 1 0.48535 0.63904 NaN 1 Median 0.48535 0.63904 NaN 1 0 Median NaN NaN NaN 0 0 Median 4270400 2557200 1713200 4270400 2557200 1713200 0 0 0 + 8077 968;957 8254 29375 44259 44259 1 LSSARPGGLGSSSLYGLGASRPR TSRSAAFSGRGAQVRLSSARPGGLGSSSLY LGSSSLYGLGASRPRVAVRSAYGGPVGAGI R L S P R V 2 3 0 0 0 0 0 5 0 0 4 0 0 0 2 6 0 0 1 0 0 0 23 2 2245.1927 CON__P08729;CON__Q3KNV1;P08729;B3KY79 CON__Q3KNV1 26 48 KRT7 Keratin, type II cytoskeletal 7 no no 4 0.0014079 47.089 4 2 0.38644 0.49396 52.096 6 Median 0.36751 0.44985 10.257 4 0 Median 1.0662 1.2321 3.1856 2 0 Median 140080000 94370000 45710000 114180000 81851000 32332000 25897000 12520000 13378000 + 8078 968;957 8255 29376;29377;29378;29379;29380;29381 44260;44261;44262;44263;44264;44265;44266 44260 7 LSSASTGKPPLSVEDDFEK VSGPSSSQMSMKTRRLSSASTGKPPLSVED STGKPPLSVEDDFEKLIWEISGGKLEAEID R L S E K L 1 0 0 2 0 0 2 1 0 0 2 2 0 1 2 4 1 0 0 1 0 0 19 1 2005.9844 B4DLG2;O75152;B4DYM8;A0A024R8H9;A0A1B0GTU1;A0A1B0GUI2 B4DLG2 703 721 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 3 1.0778E-07 110.12 4 0.75146 0.9293 12.454 4 Median 0.75146 0.9293 12.454 4 0 Median NaN NaN NaN 0 0 Median 23188000 12544000 10644000 23188000 12544000 10644000 0 0 0 8079 826 8256 29382;29383;29384;29385 44267;44268;44269;44270;44271;44272;44273 44270 7 LSSCDSFTSTINELNHCLSLR EHTEIDHWLEFSATKLSSCDSFTSTINELN FTSTINELNHCLSLRTYLVGNSLSLADLCV K L S L R T 0 1 2 1 2 0 1 0 1 1 4 0 0 1 0 5 2 0 0 0 0 0 21 0 2453.1315 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5;V9GZ76 P07814 89 109 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 3 4.9081E-38 129.32 3 0.49979 0.66467 1.1875 2 Median 0.49979 0.66467 1.1875 2 0 Median NaN NaN NaN 0 0 Median 47568000 35155000 12414000 47568000 35155000 12414000 0 0 0 8080 1242 8257 29386;29387;29388 44274;44275;44276;44277 44277 4 LSSDVLTLLIK PQARALCGLDESKAKLSSDVLTLLIKQYCR SKAKLSSDVLTLLIKQYCRESGVRNLQKQV K L S I K Q 0 0 0 1 0 0 0 0 0 1 4 1 0 0 0 2 1 0 0 1 0 0 11 0 1200.7329 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0 K7EJE8 561 571 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 2 1.2564E-14 191.45 3 1 0.48261 0.61338 9.1919 3 Median 0.48261 0.61338 9.1919 3 0 Median NaN NaN NaN 0 0 Median 30932000 17986000 12946000 27628000 17986000 9641900 3303800 0 3303800 8081 780 8258 29389;29390;29391;29392 44278;44279;44280;44281;44282;44283 44279 6 LSSEDEEEDEAEDDQSEASGKK DPLRFKPHPSNMMSKLSSEDEEEDEAEDDQ EDEAEDDQSEASGKKSVKGVSKKYVPPRLV K L S K K S 2 0 0 4 0 1 7 1 0 0 1 2 0 0 0 4 0 0 0 0 0 0 22 1 2425.9729 Q8NEJ9;G3V4G1 Q8NEJ9 141 162 NGDN Neuroguidin yes no 3 2.2288E-08 88.282 3 3 0.74345 0.90129 25.04 3 Median 0.87752 1.0794 25.497 2 0 Median 0.51224 0.79883 NaN 1 0 Median 19583000 10662000 8920800 6528900 2861900 3666900 13054000 7800300 5253900 8082 1654 8259 29393;29394;29395;29396;29397;29398 44284;44285;44286;44287;44288;44289;44290;44291;44292 44290 9 LSSEMNTSTVNSAR EELEQTYHAKLENARLSSEMNTSTVNSARE RLSSEMNTSTVNSAREELMESRMRIESLSS R L S A R E 1 1 2 0 0 0 1 0 0 0 1 0 1 0 0 4 2 0 0 1 0 0 14 0 1495.6937 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;B4DZT3 P20700 277 290 LMNB1 Lamin-B1 yes no 2 4.8603E-13 140.78 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8083 1285 8260 29399 44293 44293 1 LSSGNEENKKEEDNDEIK LKISASLKQALDKLKLSSGNEENKKEEDND GNEENKKEEDNDEIKIGTSCKNGGCSKTYQ K L S I K I 0 0 3 2 0 0 5 1 0 1 1 3 0 0 0 2 0 0 0 0 0 0 18 2 2076.9447 A0A024R3C3;A0A024R394;Q9UHD1;E9PPQ5 A0A024R3C3 116 133 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 3 0.00018084 87.99 2 0.4351 0.50313 23.846 2 Median 0.4351 0.50313 23.846 2 0 Median NaN NaN NaN 0 0 Median 1797600 1178400 619160 1797600 1178400 619160 0 0 0 8084 98 8261 29400;29401 44294;44295 44294 2 LSSGPFR SVVVDDKKFVSNITRLSSGPFRTITVRDTM KFVSNITRLSSGPFRTITVRDTMSDLPEVR R L S F R T 0 1 0 0 0 0 0 1 0 0 1 0 0 1 1 2 0 0 0 0 0 0 7 0 762.40244 A0A024R7E3;P26358;Q59FP7;B3KVA0;K7ENW7;I6L9H2 A0A024R7E3 1419 1425 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 no no 2 0.0054825 143.18 2 0.3354 0.46027 NaN 1 Median 0.3354 0.46027 NaN 1 0 Median NaN NaN NaN 0 0 Median 13242000 11897000 1344700 13242000 11897000 1344700 0 0 0 8085 176;1129 8262 29402;29403 44296;44297 44297 2 LSSLFVK MRHHIETGGGQLPAKLSSLFVKCLQNPSSD GGGQLPAKLSSLFVKCLQNPSSDIRLVAEK K L S V K C 0 0 0 0 0 0 0 0 0 0 2 1 0 1 0 2 0 0 0 1 0 0 7 0 792.47454 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2551 2557 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.015405 83.614 2 0.45991 0.60674 NaN 1 Median 0.45991 0.60674 NaN 1 0 Median NaN NaN NaN 0 0 Median 5103400 4436600 666760 5103400 4436600 666760 0 0 0 8086 1000 8263 29404;29405 44298;44299 44299 2 LSSPATLNSR NFNGNTLDNDIMLIKLSSPATLNSRVATVS IMLIKLSSPATLNSRVATVSLPRSCAAAGT K L S S R V 1 1 1 0 0 0 0 0 0 0 2 0 0 0 1 3 1 0 0 0 0 0 10 0 1044.5564 CON__P00761 CON__P00761 98 107 yes yes 2 0.0019474 114.89 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 432020000 432020000 0 287530000 287530000 0 144490000 144490000 0 + 8087 947 8264 29406;29407;29408 44300;44301;44302 44301 3 LSSSFSSR RGRPQVRLPVKTRGKLSSSFSSRGQQQEPG PVKTRGKLSSSFSSRGQQQEPGRYPSRSQQ K L S S R G 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 5 0 0 0 0 0 0 8 0 869.4243 D3DS96;Q9NRL2;Q59G54 D3DS96 1277 1284 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A no no 2 0.039782 46.426 1 0.25106 0.33743 NaN 1 Median 0.25106 0.33743 NaN 1 0 Median NaN NaN NaN 0 0 Median 1499300 1110300 389080 1499300 1110300 389080 0 0 0 8088 979 8265 29409 44303 44303 1 LSSTQEEVHQLR ALEAALVEKGEFALRLSSTQEEVHQLRRGI ALRLSSTQEEVHQLRRGIEKLRVRIEADEK R L S L R R 0 1 0 0 0 2 2 0 1 0 2 0 0 0 0 2 1 0 0 1 0 0 12 0 1425.7212 P49454 P49454 2203 2214 CENPF Centromere protein F yes yes 2 0.046071 31.843 1 1.1635 1.4715 NaN 1 Median NaN NaN NaN 0 0 Median 1.1635 1.4715 NaN 1 0 Median 1901900 769240 1132600 0 0 0 1901900 769240 1132600 8089 1351 8266 29410 44304 44304 1 LSTALAR DATYTSARTLLAILRLSTALARLRMVDVVE RTLLAILRLSTALARLRMVDVVEKEDVNEA R L S A R L 2 1 0 0 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 7 0 730.43374 B2RBA6;A0A0S2Z4A5;P33993;B3KUD7;B4DDF5;C6EMX8;Q9H4N9 B2RBA6 612 618 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 2 0.002017 117.7 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7250000 7250000 0 7250000 7250000 0 0 0 0 8090 464 8267 29411;29412 44305;44306 44306 2 LSTDHIPILYR RRGSPLLIGVRSEHKLSTDHIPILYRTART SEHKLSTDHIPILYRTARTQIGSKFTRWGS K L S Y R T 0 1 0 1 0 0 0 0 1 2 2 0 0 0 1 1 1 0 1 0 0 0 11 0 1326.7296 Q06210 Q06210 217 227 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 3 0.011292 63.694 2 0.98864 1.3495 12.854 2 Median 0.98864 1.3495 12.854 2 0 Median NaN NaN NaN 0 0 Median 10175000 4721400 5453700 10175000 4721400 5453700 0 0 0 8091 1445 8268 29413;29414 44307;44308 44307 2 LSTGCTGTLVAEK GKDFLLNYPFSTSVKLSTGCTGTLVAEKHV VKLSTGCTGTLVAEKHVLTAAHCIHDGKTY K L S E K H 1 0 0 0 1 0 1 2 0 0 2 1 0 0 0 1 3 0 0 1 0 0 13 0 1335.6704 B3KQQ9;O95084 B3KQQ9 156 168 PRSS23 Serine protease 23 yes no 2 0.004166 96.604 2 0.71995 0.91964 NaN 1 Median 0.71995 0.91964 NaN 1 0 Median NaN NaN NaN 0 0 Median 3030900 1537100 1493800 3030900 1537100 1493800 0 0 0 8092 771 8269 29415;29416 44309;44310 44310 2 LSTIALALGVER LRNEDVQLRLNSIKKLSTIALALGVERTRS IKKLSTIALALGVERTRSELLPFLTDTIYD K L S E R T 2 1 0 0 0 0 1 1 0 1 3 0 0 0 0 1 1 0 0 1 0 0 12 0 1241.7343 B4DQY1;B4DDF7;A8K7B7;A8K3H8;P30153;E9PPI5;E9PNM7;E9PHZ6;C9J9C1;A8K8B0;P30154 B4DQY1 35 46 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform no no 2 0.00015104 91.855 3 0.54843 0.73946 6.7887 3 Median 0.54843 0.73946 6.7887 3 0 Median NaN NaN NaN 0 0 Median 30318000 21098000 9220600 30318000 21098000 9220600 0 0 0 8093 595;638 8270 29417;29418;29419 44311;44312;44313;44314 44314 4 LSTPIAGLDNINVFLK LINKLKPGVIKKINRLSTPIAGLDNINVFL STPIAGLDNINVFLKACEQIGLKEAQLFHP R L S L K A 1 0 2 1 0 0 0 1 0 2 3 1 0 1 1 1 1 0 0 1 0 0 16 0 1713.9665 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMP7 A0A1P7ZIM8 63 78 LMO7 LIM domain only protein 7 yes no 2 0.031164 27.862 1 1.3007 1.6167 NaN 1 Median 1.3007 1.6167 NaN 1 0 Median NaN NaN NaN 0 0 Median 8276300 3505300 4771000 8276300 3505300 4771000 0 0 0 8094 525 8271 29420 44315 44315 1 LSTPSTGGSVDIISVK CAKSTVTTTTTTVTKLSTPSTGGSVDIISV STPSTGGSVDIISVKEQSKTVVTTTVTDSL K L S V K E 0 0 0 1 0 0 0 2 0 2 1 1 0 0 1 4 2 0 0 2 0 0 16 0 1559.8407 E7ETD6;Q12830;F5GXF5 E7ETD6 1622 1637 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 1.541E-05 107.39 4 2 1.0577 1.5158 47.007 3 Median 0.62571 0.79297 NaN 1 0 Median 1.2267 1.7314 18.809 2 0 Median 24122000 16546000 7576000 13589000 11509000 2080300 10533000 5037100 5495700 8095 1015 8272 29421;29422;29423;29424;29425;29426 44316;44317;44318;44319;44320;44321;44322 44319 7 LSTQEGLVQELQK ELKNLRACVLELEERLSTQEGLVQELQKKQ ERLSTQEGLVQELQKKQVELQEERRGLMSQ R L S Q K K 0 0 0 0 0 3 2 1 0 0 3 1 0 0 0 1 1 0 0 1 0 0 13 0 1471.7882 A0A024RCS7;Q9BW19;B4DMA8;B4E063 A0A024RCS7 220 232 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 7.6283E-17 164.65 3 1 0.81429 1.0321 72.438 3 Median 0.72445 0.91638 16.816 2 0 Median 2.1395 3.1592 NaN 1 0 Median 33971000 16363000 17608000 24591000 13187000 11404000 9379700 3175800 6204000 8096 303 8273 29427;29428;29429;29430 44323;44324;44325;44326;44327 44323 5 LSTSGNRPPANAETFSCNK IKNINPARISMKMWKLSTSGNRPPANAETF GNRPPANAETFSCNKIKDNDKEDGCFYFRD K L S N K I 2 1 3 0 1 0 1 1 0 0 1 1 0 1 2 3 2 0 0 0 0 0 19 1 2049.9538 A6NHR9;J3KTL8 A6NHR9 1417 1435 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3 2.8411E-07 104.88 4 1 0.767 1.008 18.111 5 Median 0.76596 1.0007 17.25 4 0 Median 0.9201 1.341 NaN 1 0 Median 44821000 23213000 21607000 41354000 21455000 19899000 3467300 1758500 1708700 8097 568 8274 29431;29432;29433;29434;29435 44328;44329;44330;44331;44332;44333;44334;44335 44329 8 LSTVRAMWR L S W R 1 2 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 1 0 1 0 0 9 1 1118.6019 REV__A6NFW1 yes yes 2 0.0075899 46.016 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39035000 39035000 0 39035000 39035000 0 0 0 0 + 8098 1845 8275 29436 44336 44336 864 1 LSVAAQEAAR EEAEKMKQVAEEAARLSVAAQEAARLRQLA EEAARLSVAAQEAARLRQLAEEDLAQQRAL R L S A R L 4 1 0 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1014.5458 Q15149 Q15149 2420 2429 PLEC Plectin yes yes 2 7.494E-08 128.36 3 0.98351 1.3101 21.512 3 Median 0.98351 1.3101 21.512 3 0 Median NaN NaN NaN 0 0 Median 89166000 45268000 43898000 89166000 45268000 43898000 0 0 0 8099 1507 8276 29437;29438;29439 44337;44338;44339 44339 3 LSVACFYGGTPYGGQFER LANQVSKDFSDITKKLSVACFYGGTPYGGQ ACFYGGTPYGGQFERMRNGIDILVGTPGRI K L S E R M 1 1 0 0 1 1 1 4 0 0 1 0 0 2 1 1 1 0 2 1 0 0 18 0 2007.9149 Q9NR30 Q9NR30 287 304 DDX21 Nucleolar RNA helicase 2 yes yes 2 9.6295E-24 157.33 4 0.66694 0.8907 4.4843 4 Median 0.66694 0.8907 4.4843 4 0 Median NaN NaN NaN 0 0 Median 80430000 48592000 31838000 80430000 48592000 31838000 0 0 0 8100 1756 8277 29440;29441;29442;29443 44340;44341;44342;44343;44344;44345;44346;44347;44348 44343 9 LSVACFYGGTSYQSQINHIR LANQVAKDFKDITRKLSVACFYGGTSYQSQ FYGGTSYQSQINHIRNGIDILVGTPGRIKD K L S I R N 1 1 1 0 1 2 0 2 1 2 1 0 0 1 0 3 1 0 2 1 0 0 20 0 2300.1008 Q9BQ39;B4DED6;A0A087WVC1;K0J110;Q53FI9 Q9BQ39 238 257 DDX50;mcdrh ATP-dependent RNA helicase DDX50 yes no 3 0.037607 65.265 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 967520 967520 0 967520 967520 0 0 0 0 8101 1707 8278 29444 44349 44349 1 LSVADSQAEAK PTITEGVAAALLLLKLSVADSQAEAKLSSF LLLKLSVADSQAEAKLSSFWQLIVDEKKQV K L S A K L 3 0 0 1 0 1 1 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 11 0 1117.5615 E1NZA1;Q92616;A0A024RBS1;B4DM32 E1NZA1 499 509 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.0042851 67.726 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3655900 3655900 0 3655900 3655900 0 0 0 0 8102 1000 8279 29445 44350 44350 1 LSVASTPISQR INKGGVRTPVPPRGRLSVASTPISQRRSQG PRGRLSVASTPISQRRSQGRSCGPASQSTL R L S Q R R 1 1 0 0 0 1 0 0 0 1 1 0 0 0 1 3 1 0 0 1 0 0 11 0 1157.6404 Q9BXS6;A8K4B4;H0YMD2 Q9BXS6 239 249 NUSAP1 Nucleolar and spindle-associated protein 1 yes no 2 0.00016416 98.044 2 1 0.44092 0.6192 28.873 2 Median 0.57643 0.75945 NaN 1 0 Median 0.33727 0.50486 NaN 1 0 Median 18473000 12878000 5595700 11455000 7709300 3745300 7018800 5168400 1850400 8103 1723 8280 29446;29447;29448 44351;44352;44353;44354;44355 44352 5 LSVDYGK GGGTGSGFTSLLMERLSVDYGKKSKLEFSI FTSLLMERLSVDYGKKSKLEFSIYPAPQVS R L S G K K 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 1 0 0 1 1 0 0 7 0 780.40177 B3KT06;P68363;B3KPS3;A8JZY9;B4DDU2;C9JDS9;D3DX41;Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;P68366;C9JEV8;C9JQ00;C9JJQ8;Q71U36;B4DQK4;Q1ZYQ1;Q13748;Q9UQM3;F8VQQ4 B3KT06 122 128 TUBA1B;TUBA4A;MGC16703;TUBA1C;TUBA1A;TUBA2;TUBA3C Tubulin alpha-1B chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain no no 2 0.020089 76.847 2 0.4099 0.54068 7.5133 2 Median 0.4099 0.54068 7.5133 2 0 Median NaN NaN NaN 0 0 Median 458700000 329020000 129680000 458700000 329020000 129680000 0 0 0 8104 777;1422;1607;1056 8281 29449;29450 44356;44357;44358 44357 3 LSVDYGKK GGGTGSGFTSLLMERLSVDYGKKSKLEFSI TSLLMERLSVDYGKKSKLEFSIYPAPQVST R L S K K S 0 0 0 1 0 0 0 1 0 0 1 2 0 0 0 1 0 0 1 1 0 0 8 1 908.49673 B3KT06;P68363;B3KPS3;A8JZY9;B4DDU2;C9JDS9;D3DX41;Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;P68366;C9JEV8;C9JQ00;C9JJQ8;Q71U36;B4DQK4;Q1ZYQ1;Q13748;Q9UQM3;F8VQQ4 B3KT06 122 129 TUBA1B;TUBA4A;MGC16703;TUBA1C;TUBA1A;TUBA2;TUBA3C Tubulin alpha-1B chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain no no 2;3 0.0063868 90.777 3 1 0.41513 0.5122 121.7 4 Median 0.42767 0.52329 6.5311 3 0 Plateau 3.5267 5.624 NaN 1 0 Median 170800000 104970000 65829000 142130000 99154000 42979000 28670000 5819600 22850000 8105 777;1422;1607;1056 8282 29451;29452;29453;29454 44359;44360;44361;44362;44363 44360 5 LSVEDAVK QVASGFLVDPLNNQRLSVEDAVKVGLVGRE DPLNNQRLSVEDAVKVGLVGRELSEQLGQA R L S V K V 1 0 0 1 0 0 1 0 0 0 1 1 0 0 0 1 0 0 0 2 0 0 8 0 859.4651 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 1298 1305 EPPK1 Epiplakin no no 2 0.041199 45.68 1 0.57417 0.72777 NaN 1 Median 0.57417 0.72777 NaN 1 0 Median NaN NaN NaN 0 0 Median 12297000 8567000 3729700 12297000 8567000 3729700 0 0 0 8106 373;1386 8283 29455 44364 44364 1 LSVEEAVAAGVVGGEIQEK QAATGFVIDPVRNLRLSVEEAVAAGVVGGE EAVAAGVVGGEIQEKLLSAERAVTGYTDPY R L S E K L 3 0 0 0 0 1 4 3 0 1 1 1 0 0 0 1 0 0 0 4 0 0 19 0 1883.984 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 2281 2299 EPPK1 Epiplakin no no 2 7.2473E-72 222.56 5 0.57542 0.71773 11.418 4 Median 0.57542 0.71773 11.418 4 0 Median NaN NaN NaN 0 0 Median 115950000 74331000 41618000 115950000 74331000 41618000 0 0 0 8107 373;1386 8284 29456;29457;29458;29459;29460 44365;44366;44367;44368;44369;44370;44371;44372;44373 44365 9 LSVENVPCIVTLCK SKDIELSDDPYDCIRLSVENVPCIVTLCKI RLSVENVPCIVTLCKIGYRHVVDATLQEEA R L S C K I 0 0 1 0 2 0 1 0 0 1 2 1 0 0 1 1 1 0 0 3 0 0 14 0 1630.8422 B2RDZ9;A0A024R2P7;Q15024 B2RDZ9 192 205 EXOSC7 Exosome complex component RRP42 yes no 2 1.8611E-15 140.45 2 0.63928 0.80032 4.6072 2 Median 0.63928 0.80032 4.6072 2 0 Median NaN NaN NaN 0 0 Median 23785000 12971000 10814000 23785000 12971000 10814000 0 0 0 8108 91 8285 29461;29462 44374;44375;44376 44374 2 LSVHFHPSVALFAK LFCGAENTSLWELKKLSVHFHPSVALFAKT KLSVHFHPSVALFAKTILQGNYIQYSGDPL K L S A K T 2 0 0 0 0 0 0 0 2 0 2 1 0 2 1 2 0 0 0 2 0 0 14 0 1551.8562 B2R5U7;Q03701 B2R5U7 719 732 CEBPZ CCAAT/enhancer-binding protein zeta no no 3 0.00044839 50.843 1 0.85513 1.0841 NaN 1 Median 0.85513 1.0841 NaN 1 0 Median NaN NaN NaN 0 0 Median 12330000 7153200 5177100 12330000 7153200 5177100 0 0 0 8109 693;1441 8286 29463 44377 44377 1 LSVISVEDPPQR EVIKPGDLGVDLTSKLSVISVEDPPQRTAG TSKLSVISVEDPPQRTAGVKVETTEDLVAK K L S Q R T 0 1 0 1 0 1 1 0 0 1 1 0 0 0 2 2 0 0 0 2 0 0 12 0 1338.7143 P38117 P38117 222 233 ETFB Electron transfer flavoprotein subunit beta yes yes 2 0.0019337 81.865 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16579000 11564000 5014300 11564000 11564000 0 5014300 0 5014300 8110 1327 8287 29464;29465;29466;29467 44378;44379;44380;44381 44380 4 LSVLGAITSVQQR DEFGTASNIKSRVNRLSVLGAITSVQQRLK NRLSVLGAITSVQQRLKLYNKVPPNGLVVY R L S Q R L 1 1 0 0 0 2 0 1 0 1 2 0 0 0 0 2 1 0 0 2 0 0 13 0 1370.7882 I3L492;B7Z7P8;P62495;D6RCB3;D6RJE8 I3L492 36 48 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 2 0.0078296 62.303 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1223600 1223600 0 1223600 1223600 0 0 0 0 8111 917 8288 29468 44382 44382 1 LSVLIHNSDEHK LFVFGYRAQKIRSKKLSVLIHNSDEHKDIQ SKKLSVLIHNSDEHKDIQSCTVEVHFQKII K L S H K D 0 0 1 1 0 0 1 0 2 1 2 1 0 0 0 2 0 0 0 1 0 0 12 0 1390.7205 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9J578;C9JVD8;C9JWF0;C9IYK2;C9JJ64 Q9NTJ3 142 153 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 4.1039E-12 155.33 6 2 0.62697 0.88988 10.831 7 Median 0.68309 0.88988 10.402 5 0 Median 0.57549 0.92011 12.963 2 0 Median 597690000 356070000 241630000 483650000 285700000 197950000 114050000 70371000 43675000 8112 1760 8289 29469;29470;29471;29472;29473;29474;29475;29476 44383;44384;44385;44386;44387;44388;44389;44390;44391;44392;44393;44394;44395 44385 13 LSVLLCANADGSEK GLCGGDGRPRQATQRLSVLLCANADGSEKL RLSVLLCANADGSEKLPPLVAGKSAKPRAG R L S E K L 2 0 1 1 1 0 1 1 0 0 3 1 0 0 0 2 0 0 0 1 0 0 14 0 1475.729 P07199 P07199 225 238 CENPB Major centromere autoantigen B yes yes 2 1.1311E-09 128.88 4 0.92594 1.1684 3.5133 4 Median 0.92594 1.1684 3.5133 4 0 Median NaN NaN NaN 0 0 Median 37536000 19618000 17918000 37536000 19618000 17918000 0 0 0 8113 1239 8290 29477;29478;29479;29480 44396;44397;44398;44399;44400;44401;44402 44399 7 LSVPTSDEEDEVPAPK DDDGEEKELMERLKKLSVPTSDEEDEVPAP SVPTSDEEDEVPAPKPRGGKKTKGGNVFAA K L S P K P 1 0 0 2 0 0 3 0 0 0 1 1 0 0 3 2 1 0 0 2 0 0 16 0 1711.8152 Q8NE71;Q2L6I2;B4DNU2;Q5STZ8;F5GYK6;A0PJ72 Q8NE71 104 119 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 0.017136 40.113 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3001100 0 3001100 0 0 0 3001100 0 3001100 8114 1653 8291 29481 44403 44403 1 LSVVSLK KSNISEKTKRLNELKLSVVSLKEIQESLKT TKRLNELKLSVVSLKEIQESLKTKIVDSPE K L S L K E 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 2 0 0 0 2 0 0 7 0 744.47454 Q9BZD4;E9PQC4 Q9BZD4 228 234 NUF2 Kinetochore protein Nuf2 yes no 2 0.047816 50.127 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1135600 1135600 0 0 0 0 1135600 1135600 0 8115 1727 8292 29482 44404 44404 1 LSVYAALQR RSSIAGLLLKATNEKLSVYAALQRQLLSPG KATNEKLSVYAALQRQLLSPGTALILLEAQ K L S Q R Q 2 1 0 0 0 1 0 0 0 0 2 0 0 0 0 1 0 0 1 1 0 0 9 0 1019.5764 Q15149;D3DWL0 Q15149 2847 2855 PLEC;PLEC1 Plectin yes no 2 3.6317E-06 169.37 2 1 0.68308 0.92825 62.803 3 Median 0.67576 0.90973 2.8499 2 0 Median 1.9919 2.6982 NaN 1 0 Median 49840000 26604000 23235000 44215000 24282000 19932000 5624800 2322100 3302600 8116 1507 8293 29483;29484;29485 44405;44406;44407;44408;44409 44406 5 LSYNVR GSPPATDMPRVYIGRLSYNVREKDIQRFFS DMPRVYIGRLSYNVREKDIQRFFSGYGRLL R L S V R E 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 6 0 750.40244 Q59GY3;V9HVZ0;A8K588;Q13247;B5BU15 Q59GY3 43 48 HEL-S-91;SRSF6;SFRS6 Serine/arginine-rich splicing factor 6 yes no 2 1.9571E-07 113.82 2 0.37401 0.49829 NaN 1 Median 0.37401 0.49829 NaN 1 0 Median NaN NaN NaN 0 0 Median 24852000 17635000 7217700 24852000 17635000 7217700 0 0 0 8117 615 8294 29486;29487 44410;44411 44411 2 LSYPTFFPR YLQTVQYGVHGNFPRLSYPTFFPRFEFQDV HGNFPRLSYPTFFPRFEFQDVIPPDDFLTS R L S P R F 0 1 0 0 0 0 0 0 0 0 1 0 0 2 2 1 1 0 1 0 0 0 9 0 1126.5811 Q59GQ7;A0A0C4DGA6;Q14527;A8K5B6;Q05DF7;Q05DQ5;Q05BZ6 Q59GQ7 28 36 HLTF Helicase-like transcription factor yes no 2 0.024173 77.318 2 0.69905 0.9253 NaN 1 Median 0.69905 0.9253 NaN 1 0 Median NaN NaN NaN 0 0 Median 7101300 2230000 4871300 7101300 2230000 4871300 0 0 0 8118 425 8295 29488;29489 44412;44413 44412 2 LSYTQLLR PSEVRSYVDPSTDERLSYTQLLRRCRRDDG DPSTDERLSYTQLLRRCRRDDGTGQLLLPL R L S L R R 0 1 0 0 0 1 0 0 0 0 3 0 0 0 0 1 1 0 1 0 0 0 8 0 992.56548 Q15149;D3DWL0;Q96IE3 Q15149 3992 3999 PLEC;PLEC1 Plectin yes no 2 7.3935E-05 158.36 3 2 0.67127 0.91261 75.254 5 Median 0.61536 0.82498 5.947 3 0 Median 2.2597 3.3386 14.245 2 0 Median 134440000 69519000 64922000 101370000 60368000 40999000 33074000 9151100 23923000 8119 1507 8296 29490;29491;29492;29493;29494 44414;44415;44416;44417;44418;44419;44420 44415 7 LSYTVHSSIDSISMR EILQIEATDRDEKHKLSYTVHSSIDSISMR LSYTVHSSIDSISMRKFRIDPSTGVLYTAE K L S M R K 0 1 0 1 0 0 0 0 1 2 1 0 1 0 0 5 1 0 1 1 0 0 15 0 1694.8298 E9PQ73;Q8TDW7 E9PQ73 1343 1357 FAT3 Protocadherin Fat 3 yes no 3 0.019777 24.425 1 0.72047 0.99879 NaN 1 Median 0.72047 0.99879 NaN 1 0 Median NaN NaN NaN 0 0 Median 55651000 33395000 22256000 55651000 33395000 22256000 0 0 0 8120 1044 8297 29495 44421 44421 1 LSYYGLR YETVQDILKEFFDLRLSYYGLRKEWLVGML LKEFFDLRLSYYGLRKEWLVGMLGAESTKL R L S L R K 0 1 0 0 0 0 0 1 0 0 2 0 0 0 0 1 0 0 2 0 0 0 7 0 870.45995 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80;Q6W6M6;H7BZ82 Q71UH4 1020 1026 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.015583 87.582 1 2 0.71038 0.9466 NaN 1 Median 0.71038 0.9466 NaN 1 0 Median NaN NaN NaN 0 0 Median 37824000 28556000 9268100 20911000 11643000 9268100 16913000 16913000 0 8121 1437 8298 29496;29497;29498 44422;44423;44424;44425 44423 4 LTADPGGSSETSSQVLENHTK LKSATAKGKKPSKERLTADPGGSSETSSQV GSSETSSQVLENHTKPKTSKGTKQEETFAK R L T T K P 1 0 1 1 0 1 2 2 1 0 2 1 0 0 1 4 3 0 0 1 0 0 21 0 2157.0186 A0A024R2M8;X5DRB1;A8K146;Q01831;D9I4E1;D2CPJ1;D2CPJ9;D2CPI8 A0A024R2M8 339 359 XPC DNA repair protein complementing XP-C cells no no 3 0.012026 42.118 2 1 0.52861 0.73594 10.401 3 Median 0.58154 0.74646 14.663 2 0 Median 0.48412 0.73594 NaN 1 0 Median 20795000 12657000 8138300 8484500 4375300 4109200 12310000 8281300 4029100 8122 89;976 8299 29499;29500;29501 44426;44427;44428;44429 44427 4 LTAEAIQTPLK EEAATADLDITEINKLTAEAIQTPLKSAKT EINKLTAEAIQTPLKSAKTRKVIQVDEMIV K L T L K S 2 0 0 0 0 1 1 0 0 1 2 1 0 0 1 0 2 0 0 0 0 0 11 0 1183.6812 A8K7A2;Q53HL2;B4DXT3 A8K7A2 99 109 CDCA8 Borealin yes no 2 9.068E-26 213.85 4 2 1.0397 1.3486 15.214 6 Median 1.2277 1.6096 11.244 4 0 Linear 0.72508 1.1473 5.9923 2 0 Median 693080000 356560000 336520000 469600000 224730000 244870000 223470000 131820000 91648000 8123 632 8300 29502;29503;29504;29505;29506;29507 44430;44431;44432;44433;44434;44435;44436;44437;44438;44439;44440;44441 44433 12 LTAEDLFEAR IRQQGLASYDYVRRRLTAEDLFEARIISLE YVRRRLTAEDLFEARIISLETYNLLREGTR R L T A R I 2 1 0 1 0 0 2 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 10 0 1163.5823 Q15149;D3DWL0;Q96IE3 Q15149 3784 3793 PLEC;PLEC1 Plectin yes no 2 3.7098E-08 159.28 5 0.60317 0.8107 10.139 3 Median 0.60317 0.8107 10.139 3 0 Median NaN NaN NaN 0 0 Median 85412000 53720000 31692000 85412000 53720000 31692000 0 0 0 8124 1507 8301 29508;29509;29510;29511;29512 44442;44443;44444;44445;44446;44447;44448;44449 44445 8 LTAEFEEAQTSACR WTEAILEDEQTQRQKLTAEFEEAQTSACRL KLTAEFEEAQTSACRLQEELEKLRTAGPLE K L T C R L 3 1 0 0 1 1 3 0 0 0 1 0 0 1 0 1 2 0 0 0 0 0 14 0 1611.7199 A0A0A0MRV0;A7BI36;Q9P2E9;F8W7S5;A1A5C4;A0A087WVV2;B3KSG1;A0A087WU26 A0A0A0MRV0 1311 1324 RRBP1 Ribosome-binding protein 1 yes no 2 5.5044E-10 150.09 3 1.0946 1.5278 14.821 2 Median 1.0946 1.5278 14.821 2 0 Median NaN NaN NaN 0 0 Median 7280100 3890100 3390000 7280100 3890100 3390000 0 0 0 8125 390 8302 29513;29514;29515 44450;44451;44452;44453;44454;44455 44451 6 LTAELIEQAAQYTNAVR ______________________________ AELIEQAAQYTNAVRDRELDLRGYKIPVIE K L T V R D 4 1 1 0 0 2 2 0 0 1 2 0 0 0 0 0 2 0 1 1 0 0 17 0 1889.9847 Q53G61;Q53G21;P09661;H0YKK0;Q6NVW9;Q9UEN1;O95485 Q53G61 4 20 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 2 1.4675E-09 115.57 1 0.88892 1.1759 NaN 1 Median 0.88892 1.1759 NaN 1 0 Median NaN NaN NaN 0 0 Median 9787200 5230200 4557000 9787200 5230200 4557000 0 0 0 8126 1248 8303 29516 44456;44457 44457 2 LTAIDILTTCAADIQR KKPVIVFVPSRKQTRLTAIDILTTCAADIQ TAIDILTTCAADIQRQRFLHCTEKDLIPYL R L T Q R Q 3 1 0 2 1 1 0 0 0 3 2 0 0 0 0 0 3 0 0 0 0 0 16 0 1773.9295 O75643;A4FU77;B4E150;B4E0P5;Q9UNV9;A2RRQ7 O75643 1571 1586 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 7.5242E-113 274.8 4 1 0.53627 0.72283 26.217 5 Median 0.53269 0.71997 7.283 4 0 Median 0.83188 1.3016 NaN 1 0 Median 114530000 73437000 41090000 91617000 60590000 31027000 22910000 12847000 10063000 8127 1206 8304 29517;29518;29519;29520;29521 44458;44459;44460;44461;44462;44463;44464;44465;44466 44458 9 LTALDYHNPAGFNCK ______________________________ LTALDYHNPAGFNCKDETEFRNFIVWLEDQ K L T C K D 2 0 2 1 1 0 0 1 1 0 2 1 0 1 1 0 1 0 1 0 0 0 15 0 1719.8039 Q5RLJ0;Q549M8;Q9Y224;G3V4C6;G3V4E7 Q5RLJ0 6 20 C14orf166 UPF0568 protein C14orf166 yes no 3 1.0699E-06 104.17 2 0.71371 0.91338 20.216 2 Median 0.71371 0.91338 20.216 2 0 Median NaN NaN NaN 0 0 Median 18631000 11261000 7370400 18631000 11261000 7370400 0 0 0 8128 1544 8305 29522;29523 44467;44468;44469 44469 3 LTAQVEELSK KVLEERQRFQEERQKLTAQVEELSKKLADS EERQKLTAQVEELSKKLADSDQASKVQQQK K L T S K K 1 0 0 0 0 1 2 0 0 0 2 1 0 0 0 1 1 0 0 1 0 0 10 0 1116.6027 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;K4DIE0 A0A024R5M9 1533 1542 NUMA1 yes no 2 0.00099811 79.974 2 2 0.47657 0.66543 23.039 4 Median 0.65242 0.82778 7.3515 2 0 Median 0.37538 0.55929 1.049 2 0 Median 41023000 25488000 15535000 23872000 13316000 10556000 17151000 12172000 4978900 8129 148 8306 29524;29525;29526;29527 44470;44471;44472;44473 44472 4 LTAQVEQLEVFQR KVLEERQRFQEERQKLTAQVEQLEVFQREQ QKLTAQVEQLEVFQREQTKQVEELSKKLAD K L T Q R E 1 1 0 0 0 3 2 0 0 0 2 0 0 1 0 0 1 0 0 2 0 0 13 0 1559.8308 Q4LE64;Q14980 Q4LE64 1539 1551 NUMA1 variant protein;NUMA1 Nuclear mitotic apparatus protein 1 yes no 2 1.2725E-16 151.79 4 2 0.52794 0.72322 18.003 5 Median 0.5738 0.7856 11.646 4 0 Median 0.35989 0.56813 NaN 1 0 Median 73727000 46646000 27081000 46845000 25953000 20892000 26882000 20693000 6189100 8130 1499 8307 29528;29529;29530;29531;29532;29533 44474;44475;44476;44477;44478;44479;44480;44481;44482 44477 9 LTAYAMTIPFVR DKKISPKRDKGLVEKLTAYAMTIPFVRQQV VEKLTAYAMTIPFVRQQVYKKVEEKVRKQT K L T V R Q 2 1 0 0 0 0 0 0 0 1 1 0 1 1 1 0 2 0 1 1 0 0 12 0 1381.7428 B4DDZ5;E9KL44;P40939;B4DRH6 E9KL44 268 279 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase no no 2 0.0050756 43.77 1 0.58522 0.85636 NaN 1 Median NaN NaN NaN 0 0 Median 0.58522 0.85636 NaN 1 0 Median 8114700 5715700 2399100 0 0 0 8114700 5715700 2399100 8131 1020;797 8308 29534 44483 44483 286 1 LTCFSVYCK NESGFESYEALPQHKLTCFSVYCKHGHLCP ALPQHKLTCFSVYCKHGHLCPIDTGLIEKN K L T C K H 0 0 0 0 2 0 0 0 0 0 1 1 0 1 0 1 1 0 1 1 0 0 9 0 1176.5308 A0A024R7E3;P26358;Q59FP7;I6L9H2 A0A024R7E3 469 477 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 no no 2 0.017622 57.59 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2962300 2962300 0 2962300 2962300 0 0 0 0 8132 176;1129 8309 29535;29536 44484;44485 44484 2 LTCYLCK EPIDGVRNIPPARWKLTCYLCKQKGVGACI NIPPARWKLTCYLCKQKGVGACIQCHKANC K L T C K Q 0 0 0 0 2 0 0 0 0 0 2 1 0 0 0 0 1 0 1 0 0 0 7 0 956.44596 Q86X06;A0A024R4V5;B4E3L9;A0A024R4W4;O95696 Q86X06 325 331 BRD1 Bromodomain-containing protein 1 yes no 2 0.048838 49.59 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2444800 2444800 0 2444800 2444800 0 0 0 0 8133 128 8310 29537 44486 44486 1 LTDAQILTR IEPIQSRCAVLRYTKLTDAQILTRLMNVIE VLRYTKLTDAQILTRLMNVIEKERVPYTDD K L T T R L 1 1 0 1 0 1 0 0 0 1 2 0 0 0 0 0 2 0 0 0 0 0 9 0 1029.5819 Q75MT5;B5BUD2;P35250;H7C5P4;A0A087WVY3 Q75MT5 159 167 RFC2 Replication factor C subunit 2 yes no 2 3.4687E-05 86.67 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8134 898 8311 29538;29539 44487;44488 44487 2 LTDDHVQFLIYQILR HLMGADLNNIVKCQKLTDDHVQFLIYQILR LTDDHVQFLIYQILRGLKYIHSADIIHRDL K L T L R G 0 1 0 2 0 2 0 0 1 2 3 0 0 1 0 0 1 0 1 1 0 0 15 0 1873.0098 E7EX54;B5TY33;B4E0K5;L7RSM2;A0A024RD15;Q16539 E7EX54 45 59 MAPK14 Mitogen-activated protein kinase;Mitogen-activated protein kinase 14 yes no 3 0.037829 18.138 1 0.40529 0.55957 NaN 1 Median 0.40529 0.55957 NaN 1 0 Median NaN NaN NaN 0 0 Median 2846800 1865500 981280 2846800 1865500 981280 0 0 0 8135 308 8312 29540 44489 44489 1 LTDEQVALVR YWRTVQDPMTGRDLRLTDEQVALVRRLQSG GRDLRLTDEQVALVRRLQSGQFGDVGFNPY R L T V R R 1 1 0 1 0 1 1 0 0 0 2 0 0 0 0 0 1 0 0 2 0 0 10 0 1142.6295 B2RDN4;Q14137;A8K3R2;B4DEN9;Q4G0D9;A0A075B729 B2RDN4 196 205 BOP1 Ribosome biogenesis protein BOP1 yes no 2 7.2866E-05 134.77 2 0.7285 0.98661 4.4283 2 Median 0.7285 0.98661 4.4283 2 0 Median NaN NaN NaN 0 0 Median 53826000 32233000 21593000 53826000 32233000 21593000 0 0 0 8136 738 8313 29541;29542 44490;44491 44490 2 LTDFGFCAQITPEQSK IKSDNVLLGMEGSVKLTDFGFCAQITPEQS TDFGFCAQITPEQSKRSTMVGTPYWMAPEV K L T S K R 1 0 0 1 1 2 1 1 0 1 1 1 0 2 1 1 2 0 0 0 0 0 16 0 1840.8665 A8K5M4;Q13177;H0YCG5;B7Z302;E9PM17;B7Z3K0;B3KNX7;Q9Y6B5;A0A024R5P0;A8KAN3;Q13153;H7C1X3;Q59FN2;A0A087X294;B2RCU6;O75914 A8K5M4 384 399 PAK2;PAK1;PAK3 Non-specific serine/threonine protein kinase;Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Serine/threonine-protein kinase PAK 1;Serine/threonine-protein kinase PAK 3 yes no 2 0.0017905 109.16 3 0.34916 0.44318 43.6 2 Median 0.34916 0.44318 43.6 2 0 Median NaN NaN NaN 0 0 Median 4087200 2228300 1858900 4087200 2228300 1858900 0 0 0 8137 618 8314 29543;29544;29545 44492;44493;44494 44493 2 LTDFYPVR APRKKAQGKTQQNRKLTDFYPVRRSSRKSK KTQQNRKLTDFYPVRRSSRKSKAELQSEER K L T V R R 0 1 0 1 0 0 0 0 0 0 1 0 0 1 1 0 1 0 1 1 0 0 8 0 1009.5233 E3VVS3;A0A0C4DFR3;Q9NQR1;C9JKQ0 E3VVS3 151 158 SETD8 N-lysine methyltransferase SETD8 yes no 2 0.024344 54.549 1 1.3389 1.7679 NaN 1 Median NaN NaN NaN 0 0 Median 1.3389 1.7679 NaN 1 0 Median 2941800 1477700 1464000 0 0 0 2941800 1477700 1464000 8138 419 8315 29546 44495 44495 1 LTDNGTEFSVK LAGIIPRTLHQIFEKLTDNGTEFSVKVSLL IFEKLTDNGTEFSVKVSLLEIYNEELFDLL K L T V K V 0 0 1 1 0 0 1 1 0 0 1 1 0 1 0 1 2 0 0 1 0 0 11 0 1209.5877 P52732;B2RAM6 P52732 147 157 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 2 0.0092839 72.848 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4485600 4485600 0 4485600 4485600 0 0 0 0 8139 1366 8316 29547;29548 44496;44497 44497 2 LTEGCSFR GCSTVLCQPTGGKARLTEGCSFRRKQH___ PTGGKARLTEGCSFRRKQH___________ R L T F R R 0 1 0 0 1 0 1 1 0 0 1 0 0 1 0 1 1 0 0 0 0 0 8 0 968.43857 H0YMV8;Q71UM5;A4D1G5;C9J1C5;P42677 P42677 73 80 RPS27L;LOC392748;RPS27 40S ribosomal protein S27;40S ribosomal protein S27-like no no 2 1.5871E-07 154.35 4 1 0.83768 1.1496 17.955 5 Median 0.84228 1.1507 6.7974 4 0 Median 0.47394 0.76627 NaN 1 0 Median 1897000000 1056200000 840750000 1788500000 982940000 805600000 108440000 73296000 35148000 8140 1337;1103 8317 29549;29550;29551;29552;29553 44498;44499;44500;44501;44502;44503;44504 44502 7 LTEGQGSEIQPGDLDPLSR QEGNNISSSSGHRVRLTEGQGSEIQPGDLD QGSEIQPGDLDPLSRGHETSGKGLEKTSLN R L T S R G 0 1 0 2 0 2 2 3 0 1 3 0 0 0 2 2 1 0 0 0 0 0 19 0 2010.9858 B9EGR5;Q8IWI9;H3BP52;H3BTF4;H3BTN2 B9EGR5 294 312 MGA MAX gene-associated protein yes no 2 0.047478 23.456 1 1.4735 1.9357 NaN 1 Median NaN NaN NaN 0 0 Median 1.4735 1.9357 NaN 1 0 Median 5334500 2090400 3244100 0 0 0 5334500 2090400 3244100 8141 930 8318 29554 44505 44505 1 LTEIGPR VAGRGNMRAQQSAVRLTEIGPRMTLQLIKV RAQQSAVRLTEIGPRMTLQLIKVQEGVGEG R L T P R M 0 1 0 0 0 0 1 1 0 1 1 0 0 0 1 0 1 0 0 0 0 0 7 0 784.4443 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;H7C446 A0A0A6YYI3 272 278 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 5.987E-05 182.31 2 2 0.83135 1.1681 10.977 4 Linear 0.805 1.1087 14.671 2 0 Median 0.6239 0.98343 1.5619 2 0 Median 195250000 110240000 85019000 129790000 69445000 60344000 65467000 40791000 24675000 8142 408 8319 29555;29556;29557;29558 44506;44507;44508;44509;44510;44511 44506 6 LTELMFEHYNIPAFFLCK LMSEAPWNTRAKREKLTELMFEHYNIPAFF LMFEHYNIPAFFLCKTAVLTAFANGRSTGL K L T C K T 1 0 1 0 1 0 2 0 1 1 3 1 1 3 1 0 1 0 1 0 0 0 18 0 2272.1061 Q6FI97;Q53FS0;O96019;H7C5S0 Q6FI97 136 153 BAF53A;ACTL6A Actin-like protein 6A yes no 3 2.4412E-13 90.367 2 0.82167 1.0247 2.1294 2 Median 0.82167 1.0247 2.1294 2 0 Median NaN NaN NaN 0 0 Median 4154100 2112500 2041600 4154100 2112500 2041600 0 0 0 8143 1227 8320;8321 29559;29560 44512;44513;44514 44513 466 3 LTEMETLQSQLMAEK ELVKVREKQLAAENRLTEMETLQSQLMAEK LTEMETLQSQLMAEKLQLQEQLQAETELCA R L T E K L 1 0 0 0 0 2 3 0 0 0 3 1 2 0 0 1 2 0 0 0 0 0 15 0 1750.8481 A0A024R1N1;P35579;Q86XU5;B4E3S1;A0A0U4BW16 A0A024R1N1 868 882 MYH9 Myosin-9 no no 2 0.0039874 80.469 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5686600 0 5686600 0 0 0 5686600 0 5686600 8144 61;490 8322;8323 29561;29562 44515;44516 44516 23;24 2 LTEQLAGPLR LSCFVFQENSSEMPKLTEQLAGPLRQMQEC SEMPKLTEQLAGPLRQMQECAKRIAKVSAE K L T L R Q 1 1 0 0 0 1 1 1 0 0 3 0 0 0 1 0 1 0 0 0 0 0 10 0 1096.6241 P42285;A8K6I4;B4E3M6 P42285 924 933 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 4.4285E-20 139.74 2 3 0.66625 0.91641 23.613 3 Median 0.69264 0.95254 5.4687 2 0 Median 0.42748 0.6363 NaN 1 0 Median 38402000 21177000 17225000 19215000 11535000 7679800 19187000 9642400 9545000 8145 1336 8324 29563;29564;29565;29566;29567 44517;44518;44519;44520;44521;44522;44523;44524 44524 8 LTEQPELANK QGAHFLSRSLDDALKLTEQPELANKVDMVW DDALKLTEQPELANKVDMVWIVGGSSVYKI K L T N K V 1 0 1 0 0 1 2 0 0 0 2 1 0 0 1 0 1 0 0 0 0 0 10 0 1141.5979 B4DM58;B0YJ76;A0A024RAQ3;P00374 B4DM58 100 109 DHFR;DYR Dihydrofolate reductase yes no 2 0.00033809 99.136 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5073800 5073800 0 5073800 5073800 0 0 0 0 8146 247 8325 29568;29569 44525;44526 44526 2 LTETHLPAQAR PREFLQQQYRLFQTRLTETHLPAQARTSEP FQTRLTETHLPAQARTSEPLHNVQVLNQMI R L T A R T 2 1 0 0 0 1 1 0 1 0 2 0 0 0 1 0 2 0 0 0 0 0 11 0 1235.6622 B4DYG2;O43683;A0JLU2;A8K5A6 B4DYG2 127 137 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 yes no 2 0.049973 44.753 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8147 873 8326 29570 44527 44527 1 LTEVKDELEPLLELVEQGIIPPGK ESPELLELIEDLKVKLTEVKDELEPLLELV PLLELVEQGIIPPGKGSQYLRTKYNLYLNY K L T G K G 0 0 0 1 0 1 5 2 0 2 5 2 0 0 3 0 1 0 0 2 0 0 24 1 2658.4731 Q9NQZ2 Q9NQZ2 237 260 UTP3 Something about silencing protein 10 yes yes 3 0.0319 32.487 1 0.96564 1.1761 NaN 1 Median 0.96564 1.1761 NaN 1 0 Median NaN NaN NaN 0 0 Median 36871000 21001000 15870000 36871000 21001000 15870000 0 0 0 8148 1755 8327 29571 44528 44528 1 LTEVLTDSHVK APKQLSSCLPNIVPKLTEVLTDSHVKVQKA IVPKLTEVLTDSHVKVQKAGQQALRQIGSV K L T V K V 0 0 0 1 0 0 1 0 1 0 2 1 0 0 0 1 2 0 0 2 0 0 11 0 1240.6663 E1NZA1;Q92616;A0A024RBS1 E1NZA1 1543 1553 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.012753 106.2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8149 1000 8328 29572 44529 44529 1 LTEVPVEPVLTVHPESK HLLPERKDFPVESVKLTEVPVEPVLTVHPE EVPVEPVLTVHPESKSKTKTRSRSRGRARN K L T S K S 0 0 0 0 0 0 3 0 1 0 2 1 0 0 3 1 2 0 0 4 0 0 17 0 1873.0197 A8K964;Q9H307;B4DTD4;B4E392 A8K964 537 553 PNN Pinin yes no 3 0.016025 23.799 1 1 0.76309 1.0456 99.24 2 Median 0.4068 0.51834 NaN 1 0 Median 1.4314 2.1093 NaN 1 0 Median 20862000 11640000 9222200 13357000 9339300 4017800 7505300 2300800 5204500 8150 644 8329 29573;29574 44530;44531 44530 2 LTEVQDDKEEEEEENPLLVPLEEK GVRGHQGLRDQKRMRLTEVQDDKEEEEEEN EEEEENPLLVPLEEKAVLQEEQANLWFSKG R L T E K A 0 0 1 2 0 1 9 0 0 0 4 2 0 0 2 0 1 0 0 2 0 0 24 1 2853.3655 Q8IY81;B4DKU3 Q8IY81 495 518 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 3 7.28E-68 151.94 3 2 0.70137 0.8757 4.9023 5 Median 0.7131 0.87582 6.4175 3 0 Median 0.5391 0.86962 0.98555 2 0 Median 366350000 206420000 159930000 237900000 129580000 108320000 128450000 76841000 51611000 8151 1628 8330 29575;29576;29577;29578;29579 44532;44533;44534;44535;44536;44537;44538;44539;44540 44534 9 LTFASTLSHLR KAHQARAGVSQVLNRLTFASTLSHLRRLNS VLNRLTFASTLSHLRRLNSPIGRDGKLAKP R L T L R R 1 1 0 0 0 0 0 0 1 0 3 0 0 1 0 2 2 0 0 0 0 0 11 0 1244.6877 C9J2Y9;B4DHJ3;P30876;B4DR40;C9J4M6;B4DH29 C9J2Y9 466 476 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 3 0.044975 22.578 1 0.44808 0.59284 NaN 1 Median 0.44808 0.59284 NaN 1 0 Median NaN NaN NaN 0 0 Median 9511200 6471100 3040200 9511200 6471100 3040200 0 0 0 8152 807 8331 29580 44541 44541 1 LTFDSSFSPNTGK GTEITVEDQLARGLKLTFDSSFSPNTGKKN LKLTFDSSFSPNTGKKNAKIKTGYKREHIN K L T G K K 0 0 1 1 0 0 0 1 0 0 1 1 0 2 1 3 2 0 0 0 0 0 13 0 1399.662 A0A1L1UHR1;P21796;C9JI87 A0A1L1UHR1 97 109 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2 8.2904E-30 215.06 4 2 0.69804 0.89468 83.235 6 Median 0.69136 0.88108 2.5514 4 0 Median 2.7513 4.3942 0.72264 2 0 Median 337420000 170930000 166490000 252290000 149840000 102450000 85133000 21095000 64038000 8153 524 8332 29581;29582;29583;29584;29585;29586 44542;44543;44544;44545;44546;44547;44548;44549;44550;44551;44552;44553;44554;44555;44556 44548 15 LTFDSSFSPNTGKK GTEITVEDQLARGLKLTFDSSFSPNTGKKN KLTFDSSFSPNTGKKNAKIKTGYKREHINL K L T K K N 0 0 1 1 0 0 0 1 0 0 1 2 0 2 1 3 2 0 0 0 0 0 14 1 1527.7569 A0A1L1UHR1;P21796;C9JI87 A0A1L1UHR1 97 110 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2;3 1.325E-14 147.28 9 2 0.71392 0.88326 52.329 9 Median 0.70495 0.86708 11.045 8 0 Median 2.4558 3.9673 NaN 1 0 Median 717110000 382320000 334780000 683350000 374010000 309340000 33757000 8313500 25444000 8154 524 8333 29587;29588;29589;29590;29591;29592;29593;29594;29595;29596;29597 44557;44558;44559;44560;44561;44562;44563;44564;44565;44566;44567;44568;44569;44570;44571;44572 44569 16 LTFDTTFSPNTGK GTEIAIEDQICQGLKLTFDTTFSPNTGKKS LKLTFDTTFSPNTGKKSGKIKSSYKRECIN K L T G K K 0 0 1 1 0 0 0 1 0 0 1 1 0 2 1 1 4 0 0 0 0 0 13 0 1427.6933 A0A024QZT0;P45880;A0A0A0MR02;A0A024QZN9;B4DKM5;Q5JSD2;Q5JSD1 A0A024QZT0 108 120 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2 3.3113E-59 228.64 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49434000 0 49434000 49434000 0 49434000 0 0 0 8155 20 8334 29598;29599 44573;44574 44573 2 LTFDTTFSPNTGKK GTEIAIEDQICQGLKLTFDTTFSPNTGKKS KLTFDTTFSPNTGKKSGKIKSSYKRECINL K L T K K S 0 0 1 1 0 0 0 1 0 0 1 2 0 2 1 1 4 0 0 0 0 0 14 1 1555.7882 A0A024QZT0;P45880;A0A0A0MR02;A0A024QZN9;B4DKM5;Q5JSD2;Q5JSD1 A0A024QZT0 108 121 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2;3 1.6671E-20 172.21 8 1 0.63784 0.77363 50.877 9 Median 0.62623 0.7696 3.5247 8 0 Median 2.2843 3.5121 NaN 1 0 Median 611190000 368530000 242670000 604750000 366440000 238310000 6443600 2085100 4358500 8156 20 8335 29600;29601;29602;29603;29604;29605;29606;29607;29608 44575;44576;44577;44578;44579;44580;44581;44582;44583;44584;44585;44586;44587;44588 44577 13 LTFRPHSTDSATHR RQGTGLQGQAVFKTKLTFRPHSTDSATHRK KLTFRPHSTDSATHRKMTLSLADRCSKTQK K L T H R K 1 2 0 1 0 0 0 0 2 0 1 0 0 1 1 2 3 0 0 0 0 0 14 1 1624.807 B4DNM0;Q8WVC0 B4DNM0 467 480 LEO1 RNA polymerase-associated protein LEO1 yes no 4 0.021063 23.456 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7859200 7859200 0 7859200 7859200 0 0 0 0 8157 838 8336 29609 44589 44589 1 LTFSCLGGSDNFK VEDSKDVNVNFEKSKLTFSCLGGSDNFKHL SKLTFSCLGGSDNFKHLNEIDLFHCIDPND K L T F K H 0 0 1 1 1 0 0 2 0 0 2 1 0 2 0 2 1 0 0 0 0 0 13 0 1444.6657 A0A024RB32;A0A087WYT3;B3KUY2;Q15185 A0A024RB32 36 48 PTGES3 Prostaglandin E synthase 3 yes no 2 2.2167E-11 147.3 3 0.39085 0.48834 22.27 3 Median 0.39085 0.48834 22.27 3 0 Median NaN NaN NaN 0 0 Median 77410000 53825000 23585000 77410000 53825000 23585000 0 0 0 8158 259 8337 29610;29611;29612 44590;44591;44592 44592 3 LTGDVLQPPGTSVPIVK CKYDSRDIFPAGWCRLTGDVLQPPGTSVPI GDVLQPPGTSVPIVKNIAKTESSPSEASQH R L T V K N 0 0 0 1 0 1 0 2 0 1 2 1 0 0 3 1 2 0 0 3 0 0 17 0 1719.9771 Q9UQR0;B4DZR9 Q9UQR0 232 248 SCML2 Sex comb on midleg-like protein 2 yes no 2 1.9987E-10 131.17 3 1 0.5397 0.68504 35.365 4 Median 0.53236 0.66211 34.81 3 0 Median 0.56194 0.85434 NaN 1 0 Median 25244000 17345000 7898400 13906000 9383400 4522700 11338000 7962000 3375700 8159 1799 8338 29613;29614;29615;29616 44593;44594;44595;44596;44597;44598 44595 6 LTGEDVFGITVPLITSTTGAK DQLGNIMSGYEFINKLTGEDVFGITVPLIT FGITVPLITSTTGAKLGKSAGNAVWLNRDK K L T A K L 1 0 0 1 0 0 1 3 0 2 2 1 0 1 1 1 5 0 0 2 0 0 21 0 2119.1413 H0YHS6;Q9Y2Z4 H0YHS6 235 255 YARS2 Tyrosine--tRNA ligase;Tyrosine--tRNA ligase, mitochondrial yes no 2 1.5507E-11 118.08 3 0.51741 0.65191 13.036 2 Median 0.51741 0.65191 13.036 2 0 Median NaN NaN NaN 0 0 Median 14313000 9993800 4318700 14313000 9993800 4318700 0 0 0 8160 1101 8339 29617;29618;29619 44599;44600;44601 44600 2 LTGFPYK VLDLDKSIKIVKKLKLTGFPYKIFKNTSFI IKIVKKLKLTGFPYKIFKNTSFIKGMFNSA K L T Y K I 0 0 0 0 0 0 0 1 0 0 1 1 0 1 1 0 1 0 1 0 0 0 7 0 824.44324 Q14692 Q14692 1029 1035 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.04865 79.939 1 0.83515 1.0684 NaN 1 Median 0.83515 1.0684 NaN 1 0 Median NaN NaN NaN 0 0 Median 8481100 4737500 3743600 8481100 4737500 3743600 0 0 0 8161 1495 8340 29620 44602 44602 1 LTGMAFR AAKAVGKVIPELNGKLTGMAFRVPTANVSV VIPELNGKLTGMAFRVPTANVSVVDLTCRL K L T F R V 1 1 0 0 0 0 0 1 0 0 1 0 1 1 0 0 1 0 0 0 0 0 7 0 794.41089 V9HVZ4;P04406;Q2TSD0;E7EUT5;Q0QET7;A4UCT1;Q5ZEY3;A0A0K0K1K1;O14556 V9HVZ4 228 234 HEL-S-162eP;GAPDH;GAPD;GAPDHS Glyceraldehyde-3-phosphate dehydrogenase;Glyceraldehyde-3-phosphate dehydrogenase, testis-specific yes no 2 0.011091 117.56 2 1 1.2885 1.8124 122.16 2 Median 0.54067 0.764 NaN 1 0 Median 3.0709 4.2993 NaN 1 0 Median 12430000 4350700 8079600 3957200 2363300 1593900 8473100 1987400 6485700 8162 1231 8341;8342 29621;29622;29623 44603;44604;44605 44603 3 LTGVFAPR HLKRVAAPKHWMLDKLTGVFAPRPSTGPHK KHWMLDKLTGVFAPRPSTGPHKLRECLPLI K L T P R P 1 1 0 0 0 0 0 1 0 0 1 0 0 1 1 0 1 0 0 1 0 0 8 0 859.49159 B2R491;P62701;Q96IR1;Q8TD47;C9JEH7;A4FU11;Q496E4;P22090;B7Z1M6;Q53HI6 B2R491 23 30 RPS4X;RPS4Y2;RPS4Y1 40S ribosomal protein S4;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1 yes no 2 0.015134 77.741 2 2 0.53524 0.78873 26.272 4 Median 0.72095 0.98962 0.96669 2 0 Median 0.3909 0.62798 1.1115 2 0 Median 226410000 138690000 87728000 134470000 74388000 60079000 91947000 64298000 27649000 8163 681 8343 29624;29625;29626;29627 44606;44607;44608;44609;44610;44611;44612;44613 44610 8 LTGVFAPRPSTGPHK HLKRVAAPKHWMLDKLTGVFAPRPSTGPHK LTGVFAPRPSTGPHKLRECLPLIIFLRNRL K L T H K L 1 1 0 0 0 0 0 2 1 0 1 1 0 1 3 1 2 0 0 1 0 0 15 1 1563.8522 B2R491;P62701;Q96IR1;Q8TD47;C9JEH7;A4FU11;Q496E4;P22090;B7Z1M6;Q53HI6 B2R491 23 37 RPS4X;RPS4Y2;RPS4Y1 40S ribosomal protein S4;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1 yes no 2;3;4 3.1029E-10 138.42 8 2 0.73046 0.96423 24.524 10 Median 0.76362 1.0034 15.224 8 0 Median 0.36025 0.6054 4.4159 2 0 Median 576120000 333290000 242830000 530990000 300590000 230400000 45132000 32707000 12425000 8164 681 8344 29628;29629;29630;29631;29632;29633;29634;29635;29636;29637 44614;44615;44616;44617;44618;44619;44620;44621;44622;44623;44624;44625;44626;44627;44628 44619 15 LTIAEER GNKPWISLPRGKGIRLTIAEERDKRLAAKQ LPRGKGIRLTIAEERDKRLAAKQSSG____ R L T E R D 1 1 0 0 0 0 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 7 0 830.44978 B2R491;P62701;Q96IR1;Q53HV1;Q8TD47 B2R491 246 252 RPS4X;RPS4Y2 40S ribosomal protein S4;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 yes no 2 0.0078973 143.02 2 1 0.78688 1.0841 5.3749 2 Median 0.78688 1.0841 5.3749 2 0 Median NaN NaN NaN 0 0 Median 321460000 202960000 118490000 273680000 155180000 118490000 47777000 47777000 0 8165 681 8345 29638;29639;29640 44629;44630;44631;44632 44630 4 LTIAEERDK GNKPWISLPRGKGIRLTIAEERDKRLAAKQ RGKGIRLTIAEERDKRLAAKQSSG______ R L T D K R 1 1 0 1 0 0 2 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 9 1 1073.5717 B2R491;P62701;Q96IR1;Q53HV1;Q8TD47 B2R491 246 254 RPS4X;RPS4Y2 40S ribosomal protein S4;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 yes no 2;3 1.3386E-13 177.3 8 4 0.75561 0.99118 19.026 11 Median 0.7906 1.0446 6.2194 7 0 Median 0.43175 0.72698 4.0191 4 0 Linear 1291800000 819690000 472130000 992690000 614450000 378240000 299140000 205240000 93896000 8166 681 8346 29641;29642;29643;29644;29645;29646;29647;29648;29649;29650;29651;29652 44633;44634;44635;44636;44637;44638;44639;44640;44641;44642;44643;44644;44645;44646;44647;44648;44649;44650 44646 18 LTIAFQAK EAEDGIIAYDDCGVKLTIAFQAKDVEGSTS YDDCGVKLTIAFQAKDVEGSTSPQIGDKVE K L T A K D 2 0 0 0 0 1 0 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 8 0 890.52255 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0;Q9UG93 Q9GZV0 437 444 CSDE1;UNR;DKFZp586J0620 Cold shock domain-containing protein E1 yes no 2 0.027515 81.297 1 1 0.41869 0.54241 NaN 1 Median 0.41869 0.54241 NaN 1 0 Median NaN NaN NaN 0 0 Median 8840700 3491900 5348800 5052100 3491900 1560200 3788600 0 3788600 8167 31 8347 29653;29654 44651;44652 44652 2 LTIGSNLSIR VFKKIERHSIHWPCRLTIGSNLSIRIAAYK HWPCRLTIGSNLSIRIAAYKSILQERVKKT R L T I R I 0 1 1 0 0 0 0 1 0 2 2 0 0 0 0 2 1 0 0 0 0 0 10 0 1072.6241 P13010;Q53T09 P13010 251 260 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 1.0165E-07 125.82 4 3 0.53286 0.75676 9.455 6 Median 0.53286 0.72572 4.0653 4 0 Median 0.52644 0.85991 7.9477 2 0 Median 508240000 340350000 167890000 210580000 139260000 71320000 297660000 201100000 96567000 8168 1262 8348 29655;29656;29657;29658;29659;29660;29661 44653;44654;44655;44656;44657;44658;44659;44660;44661;44662 44660 10 LTIIVSDPSHCNVLR PIVQGKSRPIKILTRLTIIVSDPSHCNVLR LTIIVSDPSHCNVLRATSSRARLYDVVAVF R L T L R A 0 1 1 1 1 0 0 0 1 2 2 0 0 0 1 2 1 0 0 2 0 0 15 0 1722.9087 P78346;Q5VU10;Q5VU11;B4DJR3 P78346 77 91 RPP30 Ribonuclease P protein subunit p30 yes no 3 0.014829 26.148 1 0.7201 1.0155 NaN 1 Median 0.7201 1.0155 NaN 1 0 Median NaN NaN NaN 0 0 Median 5883000 2872700 3010400 5883000 2872700 3010400 0 0 0 8169 1425 8349 29662 44663 44663 1 LTIQANLNR ANGRCLLAALTMDNRLTIQANLNRLQWVQL LTMDNRLTIQANLNRLQWVQLVDLTEIYGE R L T N R L 1 1 2 0 0 1 0 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1041.5931 Q9UKN8;Q05CN7 Q9UKN8 191 199 GTF3C4 General transcription factor 3C polypeptide 4 yes no 2 7.3052E-05 107.59 2 2 1.2033 1.6914 51.859 3 Median 0.55107 0.73396 NaN 1 0 Median 1.2568 1.792 8.1724 2 0 Median 30975000 19047000 11929000 18056000 13656000 4400000 12920000 5391000 7528500 8170 1789 8350 29663;29664;29665;29666 44664;44665;44666;44667;44668;44669 44666 6 LTISSPLEAHK EQKLVYILNRDAAARLTISSPLEAHKANTL AAARLTISSPLEAHKANTLVYHVVGVDVGF R L T H K A 1 0 0 0 0 0 1 0 1 1 2 1 0 0 1 2 1 0 0 0 0 0 11 0 1194.6608 A8K6V3;Q15393 A8K6V3 152 162 SF3B3 Splicing factor 3B subunit 3 yes no 3 0.012004 45.077 2 0.77401 0.98525 NaN 1 Median 0.77401 0.98525 NaN 1 0 Median NaN NaN NaN 0 0 Median 21088000 16044000 5043800 21088000 16044000 5043800 0 0 0 8171 628 8351 29667;29668 44670;44671 44670 2 LTLDTIFVPNTGK GTEISWENKLAEGLKLTLDTIFVPNTGKKS LKLTLDTIFVPNTGKKSGKLKASYKRDCFS K L T G K K 0 0 1 1 0 0 0 1 0 1 2 1 0 1 1 0 3 0 0 1 0 0 13 0 1417.7817 Q9Y277;E5RJN6;E5RHZ6;E5RK27;E5RFP6 Q9Y277 97 109 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 2 6.3471E-17 169.21 3 2 0.66509 0.82988 104.45 3 Median 0.6292 0.79335 6.3674 2 0 Median 3.2064 4.8354 NaN 1 0 Median 99966000 38484000 61482000 62778000 35259000 27519000 37188000 3225300 33963000 8172 1803 8352 29669;29670;29671;29672;29673 44672;44673;44674;44675;44676;44677;44678 44672 7 LTLDTIFVPNTGKK GTEISWENKLAEGLKLTLDTIFVPNTGKKS KLTLDTIFVPNTGKKSGKLKASYKRDCFSV K L T K K S 0 0 1 1 0 0 0 1 0 1 2 2 0 1 1 0 3 0 0 1 0 0 14 1 1545.8766 Q9Y277;E5RJN6;E5RHZ6;E5RK27;E5RFP6 Q9Y277 97 110 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 2;3 0.00055386 93.345 5 0.54104 0.66388 5.4181 2 Median 0.54104 0.66388 5.4181 2 0 Median NaN NaN NaN 0 0 Median 36823000 18475000 18348000 36823000 18475000 18348000 0 0 0 8173 1803 8353 29674;29675;29676;29677;29678 44679;44680;44681;44682;44683 44681 5 LTLHGLQQYYVK FMQDPMEVFVDDETKLTLHGLQQYYVKLKD ETKLTLHGLQQYYVKLKDSEKNRKLFDLLD K L T V K L 0 0 0 0 0 2 0 1 1 0 3 1 0 0 0 0 1 0 2 1 0 0 12 0 1461.798 A0A024RCM3;Q13838;Q5STU3;F6WLT2;A0A0G2JJZ9;A0A140T9X3;B4DP52;A0A140T996;A0A140T9X9;F6UJC5;A0A140TA18;Q69YT6;H0Y400;H0YCC6;O00148;B4DX78 O00148 256 267 hCG_2005638;DDX39B;DKFZp547B159;DDX39A Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A no no 3 1.9997E-08 150.09 3 1 0.4147 0.53187 95.678 4 Median 0.41255 0.52999 5.2389 3 0 Median 2.3208 3.4908 NaN 1 0 Median 209190000 140630000 68562000 190690000 134990000 55701000 18503000 5642500 12860000 8174 1164;296 8354 29679;29680;29681;29682 44684;44685;44686;44687;44688;44689 44687 6 LTLLNPK AYIADLDAKSGASLKLTLLNPKGRIWTMVA AKSGASLKLTLLNPKGRIWTMVAGGGASVV K L T P K G 0 0 1 0 0 0 0 0 0 0 3 1 0 0 1 0 1 0 0 0 0 0 7 0 797.50109 A0A024R1Y2;A0A024R1T9;Q4LE36;P53396 A0A024R1Y2 266 272 ACLY;ACLY variant protein ATP-citrate synthase yes no 2 0.014485 75.311 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1589000 1589000 0 1589000 1589000 0 0 0 0 8175 69 8355 29683;29684 44690;44691 44690 2 LTLLQVASR QNQQLLRENEIIKQKLTLLQVASRQKHLPK EIIKQKLTLLQVASRQKHLPKDTLLSPDSS K L T S R Q 1 1 0 0 0 1 0 0 0 0 3 0 0 0 0 1 1 0 0 1 0 0 9 0 999.60768 Q59HG1;O95239;B3KNC0 Q59HG1 997 1005 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 2.2892E-09 163.15 4 2 0.82137 1.1289 8.9854 6 Median 0.86562 1.1859 5.8146 4 0 Median 0.65219 1.0208 5.4872 2 0 Median 269510000 147870000 121640000 211410000 113000000 98407000 58097000 34865000 23232000 8176 1216 8356 29685;29686;29687;29688;29689;29690 44692;44693;44694;44695;44696;44697;44698;44699;44700;44701;44702;44703;44704 44696 13 LTLLTLHFPR GALFQEISSNDISSKLTLLTLHFPRLRILW DISSKLTLLTLHFPRLRILWCPSPHATAEL K L T P R L 0 1 0 0 0 0 0 0 1 0 4 0 0 1 1 0 2 0 0 0 0 0 10 0 1209.7234 Q92889;B4DXD8 Q92889 788 797 ERCC4 DNA repair endonuclease XPF yes no 3 0.0042173 72.243 1 0.50714 0.65895 NaN 1 Median 0.50714 0.65895 NaN 1 0 Median NaN NaN NaN 0 0 Median 1003800 657840 346000 1003800 657840 346000 0 0 0 8177 1677 8357 29691 44705 44705 1 LTLPHSIR MVVLWKIPSKELRVRLTLPHSIRSDSEDIC SKELRVRLTLPHSIRSDSEDICLFTKDEPN R L T I R S 0 1 0 0 0 0 0 0 1 1 2 0 0 0 1 1 1 0 0 0 0 0 8 0 935.55525 O76021;Q32Q62;J3QSV6;A0PJ61;A0PJ87;I3L3U9;I3L3C4;I3L234 O76021 82 89 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2;3 0.0041834 69.825 4 2 0.63445 0.87473 23.998 6 Median 0.66239 0.90424 8.8146 4 0 Median 0.36163 0.59719 4.8767 2 0 Median 1092200000 705790000 386440000 662050000 398180000 263870000 430180000 307600000 122580000 8178 1210 8358 29692;29693;29694;29695;29696;29697 44706;44707;44708;44709;44710;44711;44712;44713;44714;44715;44716 44713 11 LTLSALLDGK LIGLGYTQTLKPGIKLTLSALLDGKNVNAG KPGIKLTLSALLDGKNVNAGGHKLGLGLEF K L T G K N 1 0 0 1 0 0 0 1 0 0 4 1 0 0 0 1 1 0 0 0 0 0 10 0 1029.607 A0A1L1UHR1;P21796;B3KTS5;B4DEI3 A0A1L1UHR1 257 266 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 1;2 4.7523E-06 136.99 14 5 0.65602 0.85999 78.626 14 Median 0.63949 0.82626 10.082 11 0 Median 2.2928 3.3851 57.145 3 0 Median 877250000 506340000 370910000 835040000 496950000 338090000 42212000 9393000 32819000 8179 524 8359 29698;29699;29700;29701;29702;29703;29704;29705;29706;29707;29708;29709;29710;29711;29712;29713;29714;29715;29716 44717;44718;44719;44720;44721;44722;44723;44724;44725;44726;44727;44728;44729;44730;44731;44732;44733;44734;44735;44736;44737;44738;44739;44740;44741;44742;44743;44744;44745;44746;44747;44748 44748 32 LTLSALVDGK LIGVGYTQTLRPGVKLTLSALVDGKSINAG RPGVKLTLSALVDGKSINAGGHKVGLALEL K L T G K S 1 0 0 1 0 0 0 1 0 0 3 1 0 0 0 1 1 0 0 1 0 0 10 0 1015.5914 A0A024QZT0;P45880;A0A0A0MR02;A0A024QZN9;B4DKM5 A0A024QZT0 268 277 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 1;2 9.7175E-11 177.7 7 3 0.52147 0.6848 74.571 6 Median 0.50144 0.66378 8.8673 5 0 Median 2.597 4.1983 NaN 1 0 Median 517680000 270100000 247570000 416540000 251560000 164990000 101130000 18547000 82587000 8180 20 8360 29717;29718;29719;29720;29721;29722;29723;29724;29725;29726 44749;44750;44751;44752;44753;44754;44755;44756;44757;44758;44759;44760;44761;44762;44763 44750 15 LTLSQFQK QVCFDDDGTSSPQDRLTLSQFQKQLLEDYG TSSPQDRLTLSQFQKQLLEDYGESHFTVNQ R L T Q K Q 0 0 0 0 0 2 0 0 0 0 2 1 0 1 0 1 1 0 0 0 0 0 8 0 963.53893 H3BVG0;Q8N1F7;A8K897 H3BVG0 435 442 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.0072703 75.189 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4078200 0 4078200 0 0 0 4078200 0 4078200 8181 1111 8361 29727;29728 44764;44765 44764 2 LTLTFNR AMDNASKNASEMIDKLTLTFNRTRQAVITK NASEMIDKLTLTFNRTRQAVITKELIEIIS K L T N R T 0 1 1 0 0 0 0 0 0 0 2 0 0 1 0 0 2 0 0 0 0 0 7 0 863.4865 B4DL14;Q8TAS0;P36542 B4DL14 224 230 ATP5C1 ATP synthase subunit gamma;ATP synthase subunit gamma, mitochondrial yes no 2 0.013107 76.833 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3559700 3559700 0 3559700 3559700 0 0 0 0 8182 824 8362 29729 44766 44766 1 LTMQVSSLQR SLIVEGKREKKKVERLTMQVSSLQREPFTI KKVERLTMQVSSLQREPFTIAQGKGQKLCE R L T Q R E 0 1 0 0 0 2 0 0 0 0 2 0 1 0 0 2 1 0 0 1 0 0 10 0 1161.6176 B4DNW3;P35659;D6R9L5 P35659 66 75 DEK Protein DEK no no 2 4.4001E-06 131.62 4 3 0.72338 0.99826 6.2382 5 Median 0.73702 1.0313 1.9499 3 0 Median 0.55894 0.92254 4.9768 2 0 Median 449180000 279890000 169300000 31701000 12721000 18980000 417480000 267170000 150320000 8183 1322;843 8363;8364 29730;29731;29732;29733;29734;29735;29736 44767;44768;44769;44770;44771;44772;44773;44774;44775 44773 298 9 LTNLEGIYNSETEK KVDEQNKDYKCLVEKLTNLEGIYNSETEKL KLTNLEGIYNSETEKLRSDLERLQLSEEEA K L T E K L 0 0 2 0 0 0 3 1 0 1 2 1 0 0 0 1 2 0 1 0 0 0 14 0 1609.7835 A8CDT9;A0A087WY00;G3V394;F8WE88;F8W6H6;Q9Y4I1;B4E147;Q59FF5 A8CDT9 950 963 MYO5A Unconventional myosin-Va yes no 2 0.00014611 68.44 2 0.88996 1.1445 4.2954 2 Median 0.88996 1.1445 4.2954 2 0 Median NaN NaN NaN 0 0 Median 4954400 2542000 2412500 4954400 2542000 2412500 0 0 0 8184 361 8365 29737;29738 44776;44777;44778 44777 3 LTPEEEEILNK ESHYALPLGRKKGAKLTPEEEEILNKKRSK KGAKLTPEEEEILNKKRSKKIQKKYDERKK K L T N K K 0 0 1 0 0 0 4 0 0 1 2 1 0 0 1 0 1 0 0 0 0 0 11 0 1313.6715 Q5JR94;P62241;Q5JR95;Q9BS10 Q5JR94 129 139 RPS8 40S ribosomal protein S8 yes no 2 1.3658E-10 172.23 5 2 0.87233 1.1511 46.359 6 Median 0.88576 1.1597 2.0562 4 0 Median 0.30268 0.47601 3.5969 2 0 Median 3301700000 1968600000 1333100000 2332900000 1217100000 1115800000 968800000 751490000 217310000 8185 1399 8366 29739;29740;29741;29742;29743;29744;29745 44779;44780;44781;44782;44783;44784;44785;44786;44787;44788;44789;44790;44791;44792;44793;44794;44795;44796;44797;44798;44799;44800;44801;44802;44803;44804;44805;44806;44807;44808;44809;44810;44811;44812 44784 34 LTPEEEEILNKK ESHYALPLGRKKGAKLTPEEEEILNKKRSK GAKLTPEEEEILNKKRSKKIQKKYDERKKN K L T K K R 0 0 1 0 0 0 4 0 0 1 2 2 0 0 1 0 1 0 0 0 0 0 12 1 1441.7664 Q5JR94;P62241;Q5JR95;Q9BS10 Q5JR94 129 140 RPS8 40S ribosomal protein S8 yes no 2;3 5.008E-08 122.96 6 2 0.83854 1.0269 27.833 7 Median 0.84016 1.0293 9.4963 6 0 Median 0.33005 0.52797 NaN 1 0 Median 859600000 472080000 387530000 807640000 436950000 370690000 51960000 35126000 16834000 8186 1399 8367 29746;29747;29748;29749;29750;29751;29752;29753 44813;44814;44815;44816;44817;44818;44819;44820;44821;44822;44823;44824 44820 12 LTPLGYHLASLPVDVR KIRLRDLGALTPDERLTPLGYHLASLPVDV TPLGYHLASLPVDVRIGKLMLFGSIFRCLD R L T V R I 1 1 0 1 0 0 0 1 1 0 4 0 0 0 2 1 1 0 1 2 0 0 16 0 1749.9778 Q6P158;Q59G60;H7C109 Q6P158 1052 1067 DHX57 Putative ATP-dependent RNA helicase DHX57 yes no 3 0.00029147 54.234 1 1 0.78776 1.0418 NaN 1 Median 0.78776 1.0418 NaN 1 0 Median NaN NaN NaN 0 0 Median 10505000 5531300 4973800 10505000 5531300 4973800 0 0 0 8187 1589 8368 29754;29755 44825;44826;44827;44828 44826 4 LTPLSHEVISR PHLSRQDLTTLDVTKLTPLSHEVISRQATI DVTKLTPLSHEVISRQATINIGTIGHVAHG K L T S R Q 0 1 0 0 0 0 1 0 1 1 2 0 0 0 1 2 1 0 0 1 0 0 11 0 1250.6983 P41091;Q2VIR3;F8W810;H7BZU1 P41091 28 38 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 3 0.0093965 86.344 2 1 0.57058 0.79008 23.816 3 Median 0.55318 0.763 4.9315 2 0 Median 0.89756 1.1475 NaN 1 0 Median 19456000 11391000 8064600 15722000 9319200 6402400 3734300 2072100 1662200 8188 1333 8369 29756;29757;29758 44829;44830;44831 44829 3 LTPLTVLLR KREQVKVEQVAMELRLTPLTVLLRSVLDQL VAMELRLTPLTVLLRSVLDQLQDKDPARIF R L T L R S 0 1 0 0 0 0 0 0 0 0 4 0 0 0 1 0 2 0 0 1 0 0 9 0 1024.6645 Q86X06;A0A024R4V5;B4E3L9;A0A024R4W4;O95696;B7Z926;Q9Y4Q3;J3KQ61;Q59G93;B4DZC2;B4DZ41 Q86X06 564 572 BRD1;DKFZp434B094 Bromodomain-containing protein 1 yes no 2 0.00056072 119.41 4 2 0.95927 1.3204 14.726 6 Median 1.1817 1.5926 15.41 4 0 Linear 0.96816 1.4206 12.177 2 0 Median 55621000 26996000 28625000 28674000 13512000 15162000 26947000 13484000 13463000 8189 128 8370 29759;29760;29761;29762;29763;29764 44832;44833;44834;44835;44836;44837;44838;44839;44840;44841 44834 10 LTPTSVLDYFGTGSVQR EENTKTKNKPLSPIKLTPTSVLDYFGTGSV PTSVLDYFGTGSVQRSNKKMVASKRKELSQ K L T Q R S 0 1 0 1 0 1 0 2 0 0 2 0 0 1 1 2 3 0 1 2 0 0 17 0 1839.9367 P35251;Q14756 P35251 160 176 RFC1;LLDBP Replication factor C subunit 1 yes no 2 9.5537E-05 98.368 2 1 0.71815 0.97721 9.5793 3 Median 0.72735 0.97779 0.084333 2 0 Median 0.55715 0.8283 NaN 1 0 Median 23896000 14066000 9829100 8666500 4908200 3758300 15229000 9158200 6070800 8190 1318 8371 29765;29766;29767 44842;44843;44844;44845;44846 44844 5 LTPVPDSFFAK GDARNKRQRNPRYEKLTPVPDSFFAKHLQT RYEKLTPVPDSFFAKHLQTGENHTSVDPRQ K L T A K H 1 0 0 1 0 0 0 0 0 0 1 1 0 2 2 1 1 0 0 1 0 0 11 0 1220.6441 O94906 O94906 179 189 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.049624 61.161 1 0.60724 0.75748 NaN 1 Median 0.60724 0.75748 NaN 1 0 Median NaN NaN NaN 0 0 Median 4130700 2663500 1467200 4130700 2663500 1467200 0 0 0 8191 1212 8372 29768 44847 44847 1 LTPVRPAAASPIVSGAR TIPITKPHTMKPAPRLTPVRPAAASPIVSG PVRPAAASPIVSGARRRRVRCRKCKACVQG R L T A R R 4 2 0 0 0 0 0 1 0 1 1 0 0 0 3 2 1 0 0 2 0 0 17 1 1661.9577 I3VM54;I3VM53;Q9Y2K7;B4DSG1 I3VM54 532 548 KDM2A Lysine-specific demethylase 2A yes no 3 0.0023472 32.091 1 1 0.31021 0.40919 49.255 2 Median 0.45774 0.57968 NaN 1 0 Median 0.21023 0.28885 NaN 1 0 Median 12569000 8899200 3669500 5313900 3155600 2158300 7254800 5743600 1511200 8192 1128 8373 29769;29770 44848;44849;44850 44848 3 LTPVSPESSSTEEK IEVDIDVEHGGKRSRLTPVSPESSSTEEKS RLTPVSPESSSTEEKSSSQPSSCCSDPSKP R L T E K S 0 0 0 0 0 0 3 0 0 0 1 1 0 0 2 4 2 0 0 1 0 0 14 0 1489.7148 Q13501;E7EMC7;B4E3V2 Q13501 268 281 SQSTM1 Sequestosome-1 yes no 2 9.493E-05 104.07 3 2 4.2964 6.191 119.25 4 Linear 0.59889 0.75844 4.0205 2 0 Median 4.1494 5.9706 8.5212 2 0 Median 21836000 6400000 15436000 8792200 4162500 4629700 13044000 2237500 10806000 8193 1471 8374 29771;29772;29773;29774;29775 44851;44852;44853;44854;44855;44856;44857 44852 7 LTQDLFGTGGNTTGK DMMATLAKSQVTTVKLTQDLFGTGGNTTGK LTQDLFGTGGNTTGKGISATLHVTSNPVHA K L T G K G 0 0 1 1 0 1 0 4 0 0 2 1 0 1 0 0 4 0 0 0 0 0 15 0 1508.7471 A0A024R3K9;A0A024R3N2;Q6P4R8 A0A024R3K9 990 1004 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2 1.3311E-05 116.03 2 1 0.84559 1.1571 1.2046 2 Median 0.90403 1.1473 NaN 1 0 Median 0.79093 1.167 NaN 1 0 Median 14098000 8786300 5311400 7036100 5011100 2025000 7061700 3775200 3286400 8194 101 8375 29776;29777;29778 44858;44859;44860 44858 3 LTQDQDVDVK DNSTLQSEVKPILEKLTQDQDVDVKYFAQE PILEKLTQDQDVDVKYFAQEALTVLSLA__ K L T V K Y 0 0 0 3 0 2 0 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 10 0 1159.5721 B4DQY1;B4DDF7;A8K7B7;A8K3H8;P30153;B3KQV6;Q8NB89;B4DE69;E9PH38;B4E1Q0 B4DQY1 533 542 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 2 0.00023805 105.52 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2795100 2795100 0 2795100 2795100 0 0 0 0 8195 595 8376 29779 44861 44861 1 LTQEETNFK QTEQELKEKEKELQKLTQEETNFKSLVHDL EKELQKLTQEETNFKSLVHDLFQKVEEAKS K L T F K S 0 0 1 0 0 1 2 0 0 0 1 1 0 1 0 0 2 0 0 0 0 0 9 0 1108.5401 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 565 573 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 3.6947E-16 179.21 4 2 0.6863 0.96678 8.08 6 Median 0.73882 0.96678 9.8488 4 0 Median 0.61777 0.97747 5.7974 2 0 Median 853220000 501370000 351850000 633140000 365580000 267560000 220080000 135790000 84288000 8196 1760 8377 29780;29781;29782;29783;29784;29785 44862;44863;44864;44865;44866;44867;44868;44869;44870;44871;44872 44868 11 LTQELQQAK SFQTLDQECIQMKARLTQELQQAKNMHNVL IQMKARLTQELQQAKNMHNVLQAELDKLTS R L T A K N 1 0 0 0 0 3 1 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1057.5768 P49454 P49454 421 429 CENPF Centromere protein F yes yes 2 0.004336 75.854 1 1.0633 1.3502 NaN 1 Median 1.0633 1.3502 NaN 1 0 Median NaN NaN NaN 0 0 Median 4389300 2120100 2269200 4389300 2120100 2269200 0 0 0 8197 1351 8378 29786 44873;44874 44873 2 LTQEQVSDSQVLIR MIRHYVSILLQSDKKLTQEQVSDSQVLIRS KLTQEQVSDSQVLIRSRVLRENGKYIPKQS K L T I R S 0 1 0 1 0 3 1 0 0 1 2 0 0 0 0 2 1 0 0 2 0 0 14 0 1614.8577 Q9P0I2;S4R3U9 Q9P0I2 44 57 EMC3 ER membrane protein complex subunit 3 yes no 2 0.00085645 95.477 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1597500 1597500 0 1597500 1597500 0 0 0 0 8198 1776 8379 29787 44875 44875 1 LTQILSYLR EAQTTLTTNDIVISKLTQILSYLRQGTRNK DIVISKLTQILSYLRQGTRNKKLKKKDKGK K L T L R Q 0 1 0 0 0 1 0 0 0 1 3 0 0 0 0 1 1 0 1 0 0 0 9 0 1105.6495 Q9UK43;Q95HA6;B2R5Y4;Q13123;B4DEH2 Q9UK43 282 290 CSA2;IK Protein Red yes no 2 0.00077093 116.37 3 1 0.57057 0.77202 21.205 3 Median 0.57057 0.77202 21.205 3 0 Median NaN NaN NaN 0 0 Median 7812200 5412700 2399500 6465800 4066400 2399500 1346400 1346400 0 8199 695 8380 29788;29789;29790;29791 44876;44877;44878;44879 44877 4 LTQLQELDLSNNHLETLPDNLGLSHLR LELLSEHLDPKLLCRLTQLQELDLSNNHLE HLETLPDNLGLSHLRVLRCANNQLGDVTAL R L T L R V 0 1 3 2 0 2 2 1 2 0 9 0 0 0 1 2 2 0 0 0 0 0 27 0 3082.6047 A0A140VJD0;Q9UFC0;H7C5S6;Q59FT0 A0A140VJD0 46 72 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes no 4 0.00011208 64.547 3 1 0.48916 0.66147 11.004 4 Median 0.50277 0.68342 9.5234 3 0 Median 0.36795 0.59609 NaN 1 0 Median 199150000 140640000 58516000 73847000 49711000 24136000 125300000 90924000 34380000 8200 493 8381 29792;29793;29794;29795 44880;44881;44882;44883;44884;44885 44882 6 LTQTSGETTHTDKEPVGEGK AQKVEVKEELLAVGKLTQTSGETTHTDKEP GETTHTDKEPVGEGKGTKAFKQPAKRKLDA K L T G K G 0 0 0 1 0 1 3 3 1 0 1 2 0 0 1 1 5 0 0 1 0 0 20 1 2114.0128 P46013 P46013 2861 2880 MKI67 Antigen KI-67 yes yes 2;3;4 1.871E-162 284.53 11 7 0.87914 1.0945 16.504 18 Median 0.86049 1.059 5.6108 11 0 Median 0.90526 1.4625 3.1491 7 0 Median 1710800000 899740000 811110000 1190800000 636610000 554160000 520070000 263130000 256940000 8201 1342 8382 29796;29797;29798;29799;29800;29801;29802;29803;29804;29805;29806;29807;29808;29809;29810;29811;29812;29813 44886;44887;44888;44889;44890;44891;44892;44893;44894;44895;44896;44897;44898;44899;44900;44901;44902;44903;44904;44905;44906;44907;44908;44909;44910;44911;44912;44913;44914;44915;44916;44917;44918 44888 32 LTQTSGETTHTDKVPGGEDK LEKRDVQKELSALKKLTQTSGETTHTDKVP GETTHTDKVPGGEDKSINAFRETAKQKLDP K L T D K S 0 0 0 2 0 1 2 3 1 0 1 2 0 0 1 1 5 0 0 1 0 0 20 1 2099.9971 P46013 P46013 1410 1429 MKI67 Antigen KI-67 yes yes 2;3;4 8.7078E-91 181.4 8 5 0.9442 1.2492 15.079 13 Median 0.96159 1.1783 10.939 8 0 Median 0.9055 1.4646 9.1898 5 0 Median 259280000 136990000 122290000 156990000 84241000 72748000 102290000 52751000 49543000 8202 1342 8383 29814;29815;29816;29817;29818;29819;29820;29821;29822;29823;29824;29825;29826 44919;44920;44921;44922;44923;44924;44925;44926;44927;44928;44929;44930;44931;44932;44933;44934;44935;44936;44937;44938;44939;44940 44930 22 LTQTSGETTHTHTEPTGDGK LGKVGVKEELLAVGKLTQTSGETTHTHTEP GETTHTHTEPTGDGKSMKAFMESPKQILDS K L T G K S 0 0 0 1 0 1 2 3 2 0 1 1 0 0 1 1 7 0 0 0 0 0 20 0 2096.9611 P46013 P46013 1652 1671 MKI67 Antigen KI-67 yes yes 2;3;4 4.8665E-105 262.73 8 4 0.95735 1.2463 13.202 11 Median 0.93266 1.2174 4.0048 7 0 Median 0.99219 1.5709 2.2406 4 0 Median 1726300000 878520000 847780000 1155300000 594360000 560940000 571010000 284160000 286840000 8203 1342 8384 29827;29828;29829;29830;29831;29832;29833;29834;29835;29836;29837;29838 44941;44942;44943;44944;44945;44946;44947;44948;44949;44950;44951;44952;44953;44954;44955;44956;44957;44958;44959;44960;44961 44950 21 LTQTSGQSTHTHKEPASGDEGIK RPRKEVKEELSAVERLTQTSGQSTHTHKEP THTHKEPASGDEGIKVLKQRAKKKPNPVEE R L T I K V 1 0 0 1 0 2 2 3 2 1 1 2 0 0 1 3 4 0 0 0 0 0 23 1 2408.1568 P46013 P46013 2622 2644 MKI67 Antigen KI-67 yes yes 3;4 1.1439E-19 127.01 7 4 0.98321 1.26 8.6342 11 Median 0.99897 1.2253 5.9443 7 0 Median 0.94956 1.4031 4.9921 4 0 Median 156940000 77143000 79797000 139720000 68546000 71172000 17222000 8596700 8625000 8204 1342 8385 29839;29840;29841;29842;29843;29844;29845;29846;29847;29848;29849 44962;44963;44964;44965;44966;44967;44968;44969;44970;44971;44972;44973;44974;44975;44976;44977;44978;44979;44980;44981 44969 20 LTQVLNTHYVAPR MIVDEGHRMKNHHCKLTQVLNTHYVAPRRL CKLTQVLNTHYVAPRRLLLTGTPLQNKLPE K L T P R R 1 1 1 0 0 1 0 0 1 0 2 0 0 0 1 0 2 0 1 2 0 0 13 0 1510.8256 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;Q59FZ6;B4E0F1;B4DSI8;B3KNW7;P51531;A0A0U1RQZ9;B4DK35;B4DSC8 A7E2E1 893 905 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 3 3.8625E-06 113.61 3 0.66133 0.88102 6.2212 3 Plateau 0.66133 0.88102 6.2212 3 0 Plateau NaN NaN NaN 0 0 Median 53764000 35268000 18496000 53764000 35268000 18496000 0 0 0 8205 403;1362 8386 29850;29851;29852 44982;44983;44984;44985;44986;44987 44986 6 LTQVLR ALGRNKPHTPFRASKLTQVLRDSFIGENSR PHTPFRASKLTQVLRDSFIGENSRTCMIAT K L T L R D 0 1 0 0 0 1 0 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 6 0 728.45447 B0AZS5;H0Y5Z9;H0YB64;O00139;B4DM85;A8K3S3;A0A140VKF1;Q99661;B7Z7M6;B7Z6Q6;Q8N5N1 A8K3S3 463 468 KIF2C;FABP6;KIF2A Kinesin-like protein;Kinesin-like protein KIF2A;Kinesin-like protein KIF2C no no 2 0.035747 98.03 1 0.6614 0.92186 NaN 1 Median 0.6614 0.92186 NaN 1 0 Median NaN NaN NaN 0 0 Median 75741000 46238000 29503000 75741000 46238000 29503000 0 0 0 8206 664;1163;514 8387 29853 44988;44989 44988 2 LTRDETNYGIPQR MILSASRDKTIIMWKLTRDETNYGIPQRAL WKLTRDETNYGIPQRALRGHSHFVSDVVIS K L T Q R A 0 2 1 1 0 1 1 1 0 1 1 0 0 0 1 0 2 0 1 0 0 0 13 1 1561.7849 E9KL35;P63244;D6R9Z1;D6R9L0;D6RFX4;B4DVD2;D6RHH4;D6RAC2;D6REE5;D6RFZ9;D6RAU2;E9PD14;B4E0C3;D6RBD0;D6RGK8;D6R909;B4DWC6 E9KL35 45 57 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2;3 7.8462E-05 110.38 7 1 0.8622 1.1791 35.135 8 Median 0.85776 1.1681 8.511 7 0 Median 2.0529 2.9982 NaN 1 0 Median 278450000 145820000 132630000 263570000 140400000 123170000 14877000 5418900 9458200 8207 1019 8388 29854;29855;29856;29857;29858;29859;29860;29861 44990;44991;44992;44993;44994;44995;44996;44997;44998;44999;45000 44994 11 LTSADALRPSVVSITGPLIR EQKEEAAKALGLVIRLTSADALRPSVVSIT ALRPSVVSITGPLIRILGDRFSWNVKAALL R L T I R I 2 2 0 1 0 0 0 1 0 2 3 0 0 0 2 3 2 0 0 2 0 0 20 1 2065.1895 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2293 2312 PRIC295;GCN1L1 Translational activator GCN1 yes no 3 3.5539E-18 110.34 4 2 0.39738 0.54379 141.02 6 Median 0.37392 0.50979 9.3489 4 0 Median 5.2799 7.6725 19.038 2 0 Median 91028000 54516000 36512000 68961000 50397000 18564000 22066000 4118200 17948000 8208 1000 8389 29862;29863;29864;29865;29866;29867 45001;45002;45003;45004;45005;45006;45007;45008;45009;45010 45004 10 LTSFIGAIAIGDLVK IFKAGADEERAETARLTSFIGAIAIGDLVK LTSFIGAIAIGDLVKSTLGPKGMDKILLSS R L T V K S 2 0 0 1 0 0 0 2 0 3 2 1 0 1 0 1 1 0 0 1 0 0 15 0 1516.8865 V9HW96;P78371;F5GWF6;F8VQ14;B7Z4R3 V9HW96 26 40 HEL-S-100n;CCT2 T-complex protein 1 subunit beta yes no 2 5.0869E-06 115.92 4 0.33886 0.43712 10.971 4 Median 0.33886 0.43712 10.971 4 0 Median NaN NaN NaN 0 0 Median 20720000 14713000 6006800 20720000 14713000 6006800 0 0 0 8209 1426 8390 29868;29869;29870;29871 45011;45012;45013;45014;45015;45016;45017;45018;45019;45020;45021 45012 11 LTSIIFAEDITTGQVLR SQKAVVQARLTQPARLTSIIFAEDITTGQV SIIFAEDITTGQVLRCDAIVDLIHDIQIVS R L T L R C 1 1 0 1 0 1 1 1 0 3 2 0 0 1 0 1 3 0 0 1 0 0 17 0 1876.0306 Q8TEM1 Q8TEM1 92 108 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.041455 50.088 1 0.64821 0.92195 NaN 1 Median 0.64821 0.92195 NaN 1 0 Median NaN NaN NaN 0 0 Median 1690600 1117800 572780 1690600 1117800 572780 0 0 0 8210 1661 8391 29872 45022 45022 1 LTSLDIPATYLTGDKTDSEATNIYLQLSK VISPLRSLIVDQVQKLTSLDIPATYLTGDK KTDSEATNIYLQLSKKDPIIKLLYVTPEKI K L T S K K 2 0 1 3 0 1 1 1 0 2 5 2 0 0 1 3 5 0 2 0 0 0 29 1 3170.6235 H0YNU5;B2RAN0;P54132;B7ZKN7;B7Z2X2 H0YNU5 727 755 BLM Bloom syndrome protein yes no 3 0.0019255 45.328 1 1.3923 1.6792 NaN 1 Median 1.3923 1.6792 NaN 1 0 Median NaN NaN NaN 0 0 Median 1644800 831610 813140 1644800 831610 813140 0 0 0 8211 725 8392 29873 45023 45023 1 LTSLGVIGALVK FLHTVSKTRPFEYLRLTSLGVIGALVKTDE YLRLTSLGVIGALVKTDEQEVINFLLTTEI R L T V K T 1 0 0 0 0 0 0 2 0 1 3 1 0 0 0 1 1 0 0 2 0 0 12 0 1169.7384 D5MQE1;B2RE59;Q92600 D5MQE1 137 148 RQCD1 Cell differentiation protein RCD1 homolog yes no 2 0.0013069 81.338 3 0.71351 0.91695 NaN 1 Median 0.71351 0.91695 NaN 1 0 Median NaN NaN NaN 0 0 Median 3554200 2787900 766330 3554200 2787900 766330 0 0 0 8212 744 8393 29874;29875;29876 45024;45025;45026 45026 3 LTSLVPFVDAFQLER LQQVSQIYQSIEFSRLTSLVPFVDAFQLER LTSLVPFVDAFQLERAIVDAARHCDLQVRI R L T E R A 1 1 0 1 0 1 1 0 0 0 3 0 0 2 1 1 1 0 0 2 0 0 15 0 1733.9352 Q05BS0;Q6P1R0;Q3B770;Q7Z5T5;Q24JU4;J9R021;Q14152 Q05BS0 455 469 EIF3A;eIF3a Eukaryotic translation initiation factor 3 subunit A yes no 2 9.4151E-06 118.87 2 0.52908 0.74717 NaN 1 Median 0.52908 0.74717 NaN 1 0 Median NaN NaN NaN 0 0 Median 2798700 1844900 953800 2798700 1844900 953800 0 0 0 8213 1148 8394 29877;29878 45027;45028 45028 1 LTSSSIDPGLSIK DEEDFLNSTKAKLLKLTSSSIDPGLSIKQL LKLTSSSIDPGLSIKQLGGLYINFNADKLQ K L T I K Q 0 0 0 1 0 0 0 1 0 2 2 1 0 0 1 4 1 0 0 0 0 0 13 0 1316.7187 Q5QJE6 Q5QJE6 559 571 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 2 2.1758E-05 127.51 4 2 0.9442 1.2718 5.8693 6 Median 1.0147 1.2891 6.9829 4 0 Median 0.764 1.2235 4.4987 2 0 Median 329920000 167730000 162190000 217680000 104490000 113190000 112240000 63238000 49004000 8214 1561 8395 29879;29880;29881;29882;29883;29884 45029;45030;45031;45032;45033;45034;45035;45036;45037;45038;45039 45031 11 LTSSTSNSSLTADVNSGFAK PSYMAMTTAAKRKRKLTSSTSNSSLTADVN SNSSLTADVNSGFAKRVRQDNSSEKHLQEN K L T A K R 2 0 2 1 0 0 0 1 0 0 2 1 0 1 0 6 3 0 0 1 0 0 20 0 1985.9542 B2R6H3;Q8NI77 B2R6H3 833 852 KIF18A Kinesin-like protein;Kinesin-like protein KIF18A yes no 2 4.5616E-07 132.24 1 0.86312 1.1319 NaN 1 Median 0.86312 1.1319 NaN 1 0 Median NaN NaN NaN 0 0 Median 3192400 2006800 1185600 3192400 2006800 1185600 0 0 0 8215 699 8396 29885 45040;45041 45040 2 LTTASQTNIK EQKKRKLLPDTILEKLTTASQTNIKKSPGK TILEKLTTASQTNIKKSPGKVKEVNLQKKN K L T I K K 1 0 1 0 0 1 0 0 0 1 1 1 0 0 0 1 3 0 0 0 0 0 10 0 1075.5873 A0A024QZW2;Q9UMY1;H7C2B1 A0A024QZW2 122 131 NOL7 Nucleolar protein 7 yes no 2 0.00052627 97.431 2 0.98392 1.2242 6.4898 2 Median 0.98392 1.2242 6.4898 2 0 Median NaN NaN NaN 0 0 Median 31324000 17629000 13695000 31324000 17629000 13695000 0 0 0 8216 21 8397 29886;29887 45042;45043;45044;45045 45044 4 LTTASQTNIKK EQKKRKLLPDTILEKLTTASQTNIKKSPGK ILEKLTTASQTNIKKSPGKVKEVNLQKKNE K L T K K S 1 0 1 0 0 1 0 0 0 1 1 2 0 0 0 1 3 0 0 0 0 0 11 1 1203.6823 A0A024QZW2;Q9UMY1;H7C2B1 A0A024QZW2 122 132 NOL7 Nucleolar protein 7 yes no 2 0.0065819 89.029 1 1.0998 1.3346 NaN 1 Median 1.0998 1.3346 NaN 1 0 Median NaN NaN NaN 0 0 Median 717460 291900 425560 717460 291900 425560 0 0 0 8217 21 8398 29888 45046 45046 1 LTTDFNVIVEALSK WVPLEIMIKFNRLNRLTTDFNVIVEALSKS RLTTDFNVIVEALSKSKAELMEISEDKTKI R L T S K S 1 0 1 1 0 0 1 0 0 1 2 1 0 1 0 1 2 0 0 2 0 0 14 0 1548.8399 B5BUB5;P05455;E9PGX9;E7ERC4;E9PFL9 B5BUB5 61 74 SSB Lupus La protein yes no 2 1.0587E-17 152.96 4 0.32836 0.40778 5.5138 2 Median 0.32836 0.40778 5.5138 2 0 Median NaN NaN NaN 0 0 Median 36772000 28795000 7976900 36772000 28795000 7976900 0 0 0 8218 897 8399 29889;29890;29891;29892 45047;45048;45049;45050;45051 45050 5 LTTEATQTPVSNK KTITGNSAAVITPFKLTTEATQTPVSNKKP FKLTTEATQTPVSNKKPVFDLKASLSRPLN K L T N K K 1 0 1 0 0 1 1 0 0 0 1 1 0 0 1 1 4 0 0 1 0 0 13 0 1388.7147 Q9BXS6;A8K4B4 Q9BXS6 342 354 NUSAP1 Nucleolar and spindle-associated protein 1 yes no 2 0.014226 60.691 2 1 0.56476 0.71302 23.211 3 Median 0.63091 0.79334 15.096 2 0 Median 0.37523 0.55517 NaN 1 0 Median 26377000 18310000 8066500 16375000 10552000 5823300 10002000 7758500 2243200 8219 1723 8400 29893;29894;29895 45052;45053;45054 45054 3 LTTLELLEVR KSAATWDERFSALERLTTLELLEVRRQQEE SALERLTTLELLEVRRQQEEEERKRRPPSP R L T V R R 0 1 0 0 0 0 2 0 0 0 4 0 0 0 0 0 2 0 0 1 0 0 10 0 1185.6969 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;B4DIF8 B2ZZ89 2079 2088 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 6.0314E-10 169.44 3 0.81349 1.0976 6.5615 3 Plateau 0.81349 1.0976 6.5615 3 0 Plateau NaN NaN NaN 0 0 Median 88488000 49640000 38847000 88488000 49640000 38847000 0 0 0 8220 346 8401 29896;29897;29898 45055;45056;45057;45058;45059;45060 45057 6 LTTLPSDFCGLTHLVK AALPKATILDLSCNKLTTLPSDFCGLTHLV TTLPSDFCGLTHLVKLDLSKNKLQQLPADF K L T V K L 0 0 0 1 1 0 0 1 1 0 4 1 0 1 1 1 3 0 0 1 0 0 16 0 1800.9444 Q96AG4 Q96AG4 51 66 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 3 7.8063E-11 78.326 3 1 0.52892 0.69021 21.978 4 Median 0.52779 0.69016 2.4559 3 0 Median 0.65659 1.0542 NaN 1 0 Median 295100000 187740000 107360000 262960000 168830000 94131000 32140000 18909000 13231000 8221 1681 8402 29899;29900;29901;29902 45061;45062;45063;45064;45065;45066 45065 6 LTTPTYGDLNHLVSATMSGVTTCLR IDNEALYDICFRTLKLTTPTYGDLNHLVSA HLVSATMSGVTTCLRFPGQLNADLRKLAVN K L T L R F 1 1 1 1 1 0 0 2 1 0 4 0 1 0 1 2 6 0 1 2 0 0 25 0 2707.3309 Q5JP53;Q5SU16;P07437;B7ZAF0;B4DY90;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;B4DMU8;Q96B85;B4DXZ5;Q1KSF8;Q8IZ29;P68371;Q8IWP6;M0R2D3;Q9BVA1;Q13885;A0A024QZU2;B2R6L0;O43209;B7Z4N1;Q9UGA2;A5D907;A5D906;A1L195;A1L196;P04350;B4DE77 Q5JP53 199 223 TUBB;XTP3TPATP1;TUBB2C;TUBB4B;TUBB4A;TUBB2B;TUBB2A;DKFZp566F223 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain no no 3 4.1635E-37 110.14 7 1 0.36992 0.49887 94.088 8 Median 0.36906 0.49826 6.0545 7 0 Median 4.3441 7.1826 NaN 1 0 Median 270570000 154900000 115670000 182160000 132660000 49508000 88408000 22242000 66166000 8222 1241;1423;1230;1479 8403;8404 29903;29904;29905;29906;29907;29908;29909;29910 45067;45068;45069;45070;45071;45072;45073;45074;45075;45076;45077;45078 45071 475 12 LTVADALEPVQFEDGQK LSKVSILESLDKWERLTVADALEPVQFEDG VADALEPVQFEDGQKIVVQGEPGDEFFIIL R L T Q K I 2 0 0 2 0 2 2 1 0 0 2 1 0 1 1 0 1 0 0 2 0 0 17 0 1858.9313 K7EM13;K7EPB2;Q68DQ4;B2R5T5;P10644 K7EM13 69 85 PRKAR1A;DKFZp779L0468 cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes no 2 0.002043 98.368 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2530500 2530500 0 2530500 2530500 0 0 0 0 8223 692 8405 29911 45079 45079 1 LTVAENEAETK KSCQFVAVRRDTGEKLTVAENEAETKLQAI TGEKLTVAENEAETKLQAILEDIQVTLFTR K L T T K L 2 0 1 0 0 0 3 0 0 0 1 1 0 0 0 0 2 0 0 1 0 0 11 0 1203.5983 P07814;B4DP50 P07814 1390 1400 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 1.6433E-05 98.943 1 1 1.2236 1.6527 109.35 2 Median 0.6321 0.76275 NaN 1 0 Median 2.3686 3.5811 NaN 1 0 Median 39912000 19242000 20670000 23316000 14440000 8875500 16596000 4801400 11795000 8224 1242 8406 29912;29913 45080;45081;45082 45080 3 LTVAQIK MMEMKYNTKKAPLGKLTVAQIKAGYQSLKK TKKAPLGKLTVAQIKAGYQSLKKIEDCIRA K L T I K A 1 0 0 0 0 1 0 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 7 0 771.48544 B4DV82;G3V167;A8K214;Q9UGN5 B4DV82 183 189 PARP2 Poly [ADP-ribose] polymerase 2 yes no 2 0.045406 52.683 1 0.96427 1.2254 NaN 1 Median 0.96427 1.2254 NaN 1 0 Median NaN NaN NaN 0 0 Median 7022600 3193400 3829200 7022600 3193400 3829200 0 0 0 8225 581 8407 29914 45083 45083 1 LTVDEAVR QAGTGHIIDPATSARLTVDEAVRAGLVGPE DPATSARLTVDEAVRAGLVGPEFHEKLLSA R L T V R A 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 8 0 901.4869 Q15149;D3DWL0;Q96IE3 Q15149 3213 3220 PLEC;PLEC1 Plectin yes no 2 0.040254 72.789 1 1 0.58925 0.80361 NaN 1 Median 0.58925 0.80361 NaN 1 0 Median NaN NaN NaN 0 0 Median 43534000 25408000 18126000 40123000 25408000 14715000 3411200 0 3411200 8226 1507 8408 29915;29916 45084;45085 45084 2 LTVDEAVRK QAATGFLLDPVKGERLTVDEAVRKGLVGPE PVKGERLTVDEAVRKGLVGPELHDRLLSAE R L T R K G 1 1 0 1 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 9 1 1029.5819 Q15149;D3DWL0;Q96IE3 Q15149 3879 3887 PLEC;PLEC1 Plectin yes no 2;3 0.0021291 95.815 5 0.6487 0.86386 8.3666 5 Median 0.6487 0.86386 8.3666 5 0 Median NaN NaN NaN 0 0 Median 59832000 38411000 21421000 59832000 38411000 21421000 0 0 0 8227 1507 8409 29917;29918;29919;29920;29921 45086;45087;45088;45089;45090;45091;45092 45088 7 LTVEDPVTVEYITR RIVINRARVECQSHRLTVEDPVTVEYITRY RLTVEDPVTVEYITRYIASLKQRYTQSNGR R L T T R Y 0 1 0 1 0 0 2 0 0 1 1 0 0 0 1 0 3 0 1 3 0 0 14 0 1633.8563 H0Y586;Q05DH1;A0A0K0K1K4;O14818;H0UI83;Q4G1B8;B0YJ74;A0A087WYS6;Q8TAA3 H0Y586 22 35 PSMA7;hCG_41772;PSMA8 Proteasome subunit alpha type;Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like yes no 2 0.021005 85.924 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8228 443 8410 29922 45093 45093 1 LTVEEAVR QAATGYVIDPIKGLKLTVEEAVRMGIVGPE DPIKGLKLTVEEAVRMGIVGPEFKDKLLSA K L T V R M 1 1 0 0 0 0 2 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 8 0 915.50255 Q15149;D3DWL0;Q96IE3;H3BPE1;H3BQK9;Q9UPN3 Q15149 4122 4129 PLEC;PLEC1;MACF1 Plectin;Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.0096141 75.109 2 0.61678 0.84364 7.863 2 Median 0.61678 0.84364 7.863 2 0 Median NaN NaN NaN 0 0 Median 97023000 61956000 35066000 97023000 61956000 35066000 0 0 0 8229 1507 8411 29923;29924 45094;45095;45096 45095 3 LTVEFMHYIIAAR RTGKCHVQTIQLCRRLTVEFMHYIIAARAL RRLTVEFMHYIIAARALRKVFLSIKGIYYQ R L T A R A 2 1 0 0 0 0 1 0 1 2 1 0 1 1 0 0 1 0 1 1 0 0 13 0 1562.8279 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6;H7BYY8 B5MCF9 164 176 PES1 Pescadillo homolog yes no 3 0.0040313 91.961 3 0.87871 1.1808 7.5363 2 Median 0.87871 1.1808 7.5363 2 0 Median NaN NaN NaN 0 0 Median 19738000 10777000 8961400 19738000 10777000 8961400 0 0 0 8230 735 8412 29925;29926;29927 45097;45098;45099;45100 45097 4 LTVLPPELGNLDLTGQK GELTQLKELHIQGNRLTVLPPELGNLDLTG VLPPELGNLDLTGQKQVFKAENNPWVTPIA R L T Q K Q 0 0 1 1 0 1 1 2 0 0 5 1 0 0 2 0 2 0 0 1 0 0 17 0 1807.0091 Q32Q10;Q15404 Q32Q10 195 211 RSU1 Ras suppressor protein 1 yes no 2 0.026732 66.538 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 609770 609770 0 609770 609770 0 0 0 0 8231 1512 8413 29928 45101 45101 1 LTVLSEER LLAAGHYASDEVREKLTVLSEERAALLELW SDEVREKLTVLSEERAALLELWELRRQQYE K L T E R A 0 1 0 0 0 0 2 0 0 0 2 0 0 0 0 1 1 0 0 1 0 0 8 0 945.51311 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 442 449 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.006295 84.498 1 0.96616 1.2943 NaN 1 Median 0.96616 1.2943 NaN 1 0 Median NaN NaN NaN 0 0 Median 27366000 14057000 13308000 27366000 14057000 13308000 0 0 0 8232 1476 8414 29929 45102;45103 45103 2 LTVNEAVK QAASGFLLDPVRNRRLTVNEAVKEGVVGPE DPVRNRRLTVNEAVKEGVVGPELHHKLLSA R L T V K E 1 0 1 0 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 8 0 872.49673 Q15149;D3DWL0 Q15149 2885 2892 PLEC;PLEC1 Plectin yes no 2 0.020669 84.743 2 0.75606 0.93742 12.144 2 Median 0.75606 0.93742 12.144 2 0 Median NaN NaN NaN 0 0 Median 42183000 24934000 17249000 42183000 24934000 17249000 0 0 0 8233 1507 8415 29930;29931 45104;45105 45105 2 LTVNPGTK PLEIDYGQDEEAVKKLTVNPGTKSKLPKPV DEEAVKKLTVNPGTKSKLPKPVQDLIKMIF K L T T K S 0 0 1 0 0 0 0 1 0 0 1 1 0 0 1 0 2 0 0 1 0 0 8 0 828.47052 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 655 662 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.039782 46.426 1 0.87309 1.1109 NaN 1 Median 0.87309 1.1109 NaN 1 0 Median NaN NaN NaN 0 0 Median 1323000 789070 533900 1323000 789070 533900 0 0 0 8234 107 8416 29932 45106 45106 1 LTVQEEQIVELIEK GVYISEENFRVMSGKLTVQEEQIVELIEKI KLTVQEEQIVELIEKIGAVEEELNRVTELF K L T E K I 0 0 0 0 0 2 4 0 0 2 2 1 0 0 0 0 1 0 0 2 0 0 14 0 1669.9138 P52732 P52732 412 425 KIF11 Kinesin-like protein KIF11 yes yes 2 4.0225E-27 198.32 2 1 0.2999 0.38611 NaN 1 Median 0.2999 0.38611 NaN 1 0 Median NaN NaN NaN 0 0 Median 17213000 5151800 12061000 8111700 5151800 2959900 9101400 0 9101400 8235 1366 8417 29933;29934;29935 45107;45108;45109;45110 45107 4 LTVSSLQESGLK PFVVPVASPSGDARRLTVSSLQESGLKVNQ ARRLTVSSLQESGLKVNQPASFAVSLNGAK R L T L K V 0 0 0 0 0 1 1 1 0 0 3 1 0 0 0 3 1 0 0 1 0 0 12 0 1260.6925 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4DTD5 P21333 2335 2346 FLNA;FLJ00119 Filamin-A yes no 2 3.3123E-10 119.16 2 0.91859 1.1607 6.0295 2 Median 0.91859 1.1607 6.0295 2 0 Median NaN NaN NaN 0 0 Median 17179000 9971100 7208000 17179000 9971100 7208000 0 0 0 8236 1287 8418 29936;29937 45111;45112;45113 45113 3 LTVVDTPGYGDAINCR EASTVEIEERGVKLRLTVVDTPGYGDAINC TVVDTPGYGDAINCRDCFKTIISYIDEQFE R L T C R D 1 1 1 2 1 0 0 2 0 1 1 0 0 0 1 0 2 0 1 2 0 0 16 0 1749.8356 C9J2Q4;B5MCX3;Q15019;B5MD47;C9IY94;C9IZU3;C9JQJ4;C9J938;H7C310;C9JB25 C9J2Q4 57 72 SEPT2 Septin-2 yes no 2 1.8374E-05 105.36 1 0.95764 1.3343 NaN 1 Median 0.95764 1.3343 NaN 1 0 Median NaN NaN NaN 0 0 Median 1284200 612550 671640 1284200 612550 671640 0 0 0 8237 900 8419 29938 45114 45114 1 LTWHAYPEDAENK NVKCPQIVIAFYEERLTWHAYPEDAENKEK ERLTWHAYPEDAENKEKETAKS________ R L T N K E 2 0 1 1 0 0 2 0 1 0 1 1 0 0 1 0 1 1 1 0 0 0 13 0 1572.7209 V9HWG0;P45973;Q6I9T7 V9HWG0 172 184 HEL25;CBX5 Chromobox protein homolog 5 yes no 2;3 0.016379 37.995 2 0.25675 0.38278 8.5228 2 Median NaN NaN NaN 0 0 Median 0.25675 0.38278 8.5228 2 0 Median 24916000 19480000 5436400 0 0 0 24916000 19480000 5436400 8238 1341 8420 29939;29940 45115;45116 45116 2 LTWHSCPEDEAQ NMKCPQIVIAFYEERLTWHSCPEDEAQ___ EERLTWHSCPEDEAQ_______________ R L T A Q - 1 0 0 1 1 1 2 0 1 0 1 0 0 0 1 1 1 1 0 0 0 0 12 0 1471.6038 A4D177;Q13185 A4D177 172 183 CBX3 Chromobox protein homolog 3 yes no 2 0.0007829 87.308 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57217000 0 0 0 0 0 57217000 0 0 8239 547 8421 29941;29942 45117;45118 45117 2 LTYHQLLER GTGDLRFLDPNTLERLTYHQLLERCVRAPG PNTLERLTYHQLLERCVRAPGSGLALLPLK R L T E R C 0 1 0 0 0 1 1 0 1 0 3 0 0 0 0 0 1 0 1 0 0 0 9 0 1171.635 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 209 217 EPPK1 Epiplakin no no 3 0.029468 24.853 1 0.54618 0.76778 NaN 1 Median 0.54618 0.76778 NaN 1 0 Median NaN NaN NaN 0 0 Median 5976500 3000500 2975900 5976500 3000500 2975900 0 0 0 8240 373;1386 8422 29943 45119 45119 1 LTYLLQNSLGGSAK ALSNKESHVPYRNSKLTYLLQNSLGGSAKM KLTYLLQNSLGGSAKMLMFVNISPLEENVS K L T A K M 1 0 1 0 0 1 0 2 0 0 4 1 0 0 0 2 1 0 1 0 0 0 14 0 1463.7984 A0A024RCS7;Q9BW19;B4DMA8;B4E063;A0A087X1W5 A0A024RCS7 620 633 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 9.93E-06 99.215 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8241 303 8423 29944 45120 45120 1 LTYQDAVNLQNYVEEK KYNHLVYSQIPAAVKLTYQDAVNLQNYVEE TYQDAVNLQNYVEEKLIPTWNWMVSIMDST K L T E K L 1 0 2 1 0 2 2 0 0 0 2 1 0 0 0 0 1 0 2 2 0 0 16 0 1925.9371 E7EMW7;O95071 E7EMW7 1813 1828 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 2 0.00016444 124.48 3 0.39565 0.51327 25.296 2 Median 0.39565 0.51327 25.296 2 0 Median NaN NaN NaN 0 0 Median 6083900 3944700 2139200 6083900 3944700 2139200 0 0 0 8242 1008 8424 29945;29946;29947 45121;45122;45123 45121 3 LVAELHKR LEKAKEVVACELDPRLVAELHKRVQGTPVA ACELDPRLVAELHKRVQGTPVASKLQVLVG R L V K R V 1 1 0 0 0 0 1 0 1 0 2 1 0 0 0 0 0 0 0 1 0 0 8 1 964.5818 A8K9K8;Q9UNQ2;A0A0C4DGB1;B4DRY2;D6RCL3 A8K9K8 90 97 DIMT1 Probable dimethyladenosine transferase yes no 3 0.020579 33.263 1 1.23 1.5623 NaN 1 Median 1.23 1.5623 NaN 1 0 Median NaN NaN NaN 0 0 Median 8219000 2888000 5331000 8219000 2888000 5331000 0 0 0 8243 648 8425 29948 45124 45124 1 LVAFCPFASSQVALENANAVSEGVVHEDLR EESVLNLGKFHSIVRLVAFCPFASSQVALE NANAVSEGVVHEDLRLLLETHLPSKKKKVL R L V L R L 5 1 2 1 1 1 3 1 1 0 3 0 0 2 1 3 0 0 0 5 0 0 30 0 3228.5874 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 48 77 NOP56 Nucleolar protein 56 yes no 3 4.3512E-28 127.11 5 2 0.36722 0.59512 50.987 7 Median 0.61704 0.83975 61.33 5 0 Median 0.31919 0.52385 18.037 2 0 Median 879580000 569290000 310290000 614290000 365550000 248740000 265290000 203740000 61547000 8244 647 8426 29949;29950;29951;29952;29953;29954;29955 45125;45126;45127;45128;45129;45130;45131;45132;45133;45134;45135;45136;45137 45126 13 LVAGEMGQNEPDQGGQR RVLDVNLMGTFNVIRLVAGEMGQNEPDQGG AGEMGQNEPDQGGQRGVIINTASVAAFEGQ R L V Q R G 1 1 1 1 0 3 2 4 0 0 1 0 1 0 1 0 0 0 0 1 0 0 17 0 1784.8112 A0A0S2Z410;Q99714;Q5H928;A0A0S2Z434 A0A0S2Z410 131 147 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2 2.26E-07 110.98 1 2 3.0216 4.3552 3.7795 2 Median NaN NaN NaN 0 0 Median 3.0216 4.3552 3.7795 2 0 Median 25175000 6501100 18674000 0 0 0 25175000 6501100 18674000 8245 458 8427 29956;29957;29958 45138;45139;45140;45141;45142 45141 159 5 LVAIVDVIDQNR VGRVADVSFGPHAGKLVAIVDVIDQNRALV AGKLVAIVDVIDQNRALVDGPCTQVRRQAM K L V N R A 1 1 1 2 0 1 0 0 0 2 1 0 0 0 0 0 0 0 0 3 0 0 12 0 1353.7616 A8K3Q9;E7EPB3;A0PJ62;B7Z6S8;A8K7N0;Q6IPH7;P50914 A8K3Q9 24 35 RPL14 60S ribosomal protein L14 no no 2 1.4203E-36 182.39 10 2 0.69057 1.0183 7.6904 6 Median 0.7031 0.96969 8.0753 4 0 Median 0.65467 1.0782 4.2435 2 0 Median 2689800000 1558800000 1131000000 2341800000 1344000000 997790000 347980000 214760000 133220000 8246 596;532 8428 29959;29960;29961;29962;29963;29964;29965;29966;29967;29968;29969;29970 45143;45144;45145;45146;45147;45148;45149;45150;45151;45152;45153;45154;45155;45156;45157;45158;45159;45160;45161;45162;45163 45153 21 LVARPEPATGYTLEFR SVQTADHRFLRHDGRLVARPEPATGYTLEF VARPEPATGYTLEFRSGKVAFRDCEGRYLA R L V F R S 2 2 0 0 0 0 2 1 0 0 2 0 0 1 2 0 2 0 1 1 0 0 16 1 1818.9628 B3KTA3;Q16658 B3KTA3 181 196 FSCN1 Fascin yes no 3 0.00016092 51.76 2 3.0044 4.0375 24.015 2 Median NaN NaN NaN 0 0 Median 3.0044 4.0375 24.015 2 0 Median 11146000 3206500 7939200 0 0 0 11146000 3206500 7939200 8247 778 8429 29971;29972 45164;45165 45164 2 LVCSGENDNHGQIANLPSAVTSDQK SDVLPKAANTATEEKLVCSGENDNHGQIAN GQIANLPSAVTSDQKSQKVDTLPYVPEPIK K L V Q K S 2 0 3 2 1 2 1 2 1 1 2 1 0 0 1 3 1 0 0 2 0 0 25 0 2653.2402 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1626 1650 AHCTF1 Protein ELYS yes no 3 2.4015E-48 167.35 4 2 0.76599 0.96055 28.504 6 Median 0.82476 1.0339 8.8958 4 0 Median 0.39301 0.59398 1.9201 2 0 Median 165990000 95582000 70405000 131500000 70138000 61362000 34488000 25444000 9043500 8248 1670 8430 29973;29974;29975;29976;29977;29978 45166;45167;45168;45169;45170;45171;45172;45173;45174;45175;45176;45177;45178;45179 45171 14 LVDHIDQTPGFSLQQLR GYRCLADIVVATPGRLVDHIDQTPGFSLQQ DHIDQTPGFSLQQLRFLIIDEADRMIDSMH R L V L R F 0 1 0 2 0 3 0 1 1 1 3 0 0 1 1 1 1 0 0 1 0 0 17 0 1966.0272 F1T0L5;Q8N8A6 F1T0L5 350 366 DDX51 ATP-dependent RNA helicase DDX51 yes no 3 0.0023805 61.265 1 0.30375 0.42876 NaN 1 Median 0.30375 0.42876 NaN 1 0 Median NaN NaN NaN 0 0 Median 4112700 2946000 1166600 4112700 2946000 1166600 0 0 0 8249 1048 8431 29979 45180 45180 1 LVDPVAGSGGPGSR GDEEDEDEIIVPKKKLVDPVAGSGGPGSRF KLVDPVAGSGGPGSRFKGKHSLDSDEEEDD K L V S R F 1 1 0 1 0 0 0 4 0 0 1 0 0 0 2 2 0 0 0 2 0 0 14 0 1267.6521 A0A024QZC1;O95400;A0A0S2Z5J7 A0A024QZC1 27 40 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 yes no 2 0.0026772 45.879 1 0.26093 0.34771 NaN 1 Median 0.26093 0.34771 NaN 1 0 Median NaN NaN NaN 0 0 Median 7160800 5048500 2112200 7160800 5048500 2112200 0 0 0 8250 8 8432 29980 45181 45181 1 LVDQNLNK EMKLRLDSIVIQQGRLVDQNLNKIGKDEML IVIQQGRLVDQNLNKIGKDEMLQMIRHGAT R L V N K I 0 0 2 1 0 1 0 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 8 0 942.51345 O60264;B7ZAX9;B4DZC0 O60264 637 644 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 0.033092 49.358 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4480100 0 4480100 1235100 0 1235100 3245000 0 3245000 8251 1189 8433 29981;29982 45182;45183 45182 2 LVDQSGPPHEPK LLEYARSHGFAAEFKLVDQSGPPHEPKFVY EFKLVDQSGPPHEPKFVYQAKVGGRWFPAV K L V P K F 0 0 0 1 0 1 1 1 1 0 1 1 0 0 3 1 0 0 0 1 0 0 12 0 1302.6568 Q59EC0;D3DV75;H0YCK3;A0A024DAK3;P55265;B7Z8Y3 Q59EC0 764 775 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.013814 59.426 1 1 0.55548 0.67831 NaN 1 Median 0.55548 0.67831 NaN 1 0 Median NaN NaN NaN 0 0 Median 4245900 2657900 1588000 3707800 2119800 1588000 538090 538090 0 8252 1552 8434 29983;29984 45184;45185 45184 1 LVDSPDIQPVGTCEK RLRLDGSDNRNDFWRLVDSPDIQPVGTCEK LVDSPDIQPVGTCEKEGDLLQPPLGYQMNT R L V E K E 0 0 0 2 1 1 1 1 0 1 1 1 0 0 2 1 1 0 0 2 0 0 15 0 1656.8029 Q9UQR0;B4DZR9 Q9UQR0 109 123 SCML2 Sex comb on midleg-like protein 2 yes no 2 3.4457E-09 160.22 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10935000 10935000 0 10935000 10935000 0 0 0 0 8253 1799 8435 29985;29986;29987;29988 45186;45187;45188;45189;45190;45191;45192;45193 45189 8 LVDTAWLEIMTK LVLEMVHHNTASLEKLVDTAWLEIMTKYAV LEKLVDTAWLEIMTKYAVGEECDFEVGKEK K L V T K Y 1 0 0 1 0 0 1 0 0 1 2 1 1 0 0 0 2 1 0 1 0 0 12 0 1418.7479 Q9UIG0 Q9UIG0 102 113 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.0084841 55.353 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1243000 0 1243000 0 0 0 1243000 0 1243000 8254 1786 8436 29989 45194 45194 824 1 LVDVVK GGRHVDYVADQIVTKLVDVVKKKNKGGVAV YVADQIVTKLVDVVKKKNKGGVAVKAHQVK K L V V K K 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 3 0 0 6 0 671.42178 P11388 P11388 337 342 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.034548 84.025 1 0.89689 1.1854 NaN 1 Median 0.89689 1.1854 NaN 1 0 Median NaN NaN NaN 0 0 Median 383330000 193150000 190180000 383330000 193150000 190180000 0 0 0 8255 1256 8437 29990 45195;45196 45196 2 LVDVVKK GGRHVDYVADQIVTKLVDVVKKKNKGGVAV VADQIVTKLVDVVKKKNKGGVAVKAHQVKN K L V K K K 0 0 0 1 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 3 0 0 7 1 799.51674 P11388 P11388 337 343 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.017517 94.163 2 2 0.86617 1.2558 14.561 4 Median 0.90502 1.1118 12.348 2 0 Median 0.85104 1.3683 7.2627 2 0 Median 181080000 93515000 87569000 107330000 54489000 52845000 73750000 39026000 34724000 8256 1256 8438 29991;29992;29993;29994 45197;45198;45199;45200;45201 45197 5 LVEALCAEHQINLIK LCVLASNCDEPMYVKLVEALCAEHQINLIK LVEALCAEHQINLIKVDDNKKLGEWVGLCK K L V I K V 2 0 1 0 1 1 2 0 1 2 3 1 0 0 0 0 0 0 0 1 0 0 15 0 1749.9447 P25398 P25398 64 78 RPS12 40S ribosomal protein S12 yes yes 2;3 3.9596E-50 173.19 7 1 0.89812 1.1535 19.824 8 Median 0.89722 1.1424 2.9102 7 0 Median 1.2896 1.9938 NaN 1 0 Median 337610000 179940000 157680000 313990000 169360000 144630000 23627000 10580000 13047000 8257 1296 8439 29995;29996;29997;29998;29999;30000;30001;30002 45202;45203;45204;45205;45206;45207;45208;45209;45210;45211;45212;45213 45209 12 LVEDNPSSLSLVEIYK FFTVPRVVAVSPQMRLVEDNPSSLSLVEIY VEDNPSSLSLVEIYKQRCAKKGIEHDNPIS R L V Y K Q 0 0 1 1 0 0 2 0 0 1 3 1 0 0 1 3 0 0 1 2 0 0 16 0 1804.9458 Q59FH1;H0Y4W2;F2Z2U4;Q9Y4A5 Q59FH1 3311 3326 TRRAP Transformation/transcription domain-associated protein yes no 2 0.00034066 88.087 3 0.75651 0.99109 NaN 1 Median 0.75651 0.99109 NaN 1 0 Median NaN NaN NaN 0 0 Median 7435000 4899800 2535200 7435000 4899800 2535200 0 0 0 8258 1050 8440 30003;30004;30005 45214;45215;45216 45216 3 LVEFSAFLEQQRDPDSYNK VPAWQGRSIGTTKLRLVEFSAFLEQQRDPD SAFLEQQRDPDSYNKHLFVHIGHANHSYSD R L V N K H 1 1 1 2 0 2 2 0 0 0 2 1 0 2 1 2 0 0 1 1 0 0 19 1 2285.0964 H0YE88;P28347;E9PKB7;Q59EF3 H0YE88 218 236 TEAD1 Transcriptional enhancer factor TEF-1 yes no 3 2.5241E-10 98.573 3 1 0.76757 1.0389 13.668 3 Median 0.76757 1.0389 13.668 3 0 Median NaN NaN NaN 0 0 Median 44500000 27751000 16749000 39404000 22655000 16749000 5096600 5096600 0 8259 1099 8441 30006;30007;30008;30009 45217;45218;45219;45220;45221;45222;45223 45222 7 LVEIDNGK YSEELRETKRRHETRLVEIDNGKQREFESR KRRHETRLVEIDNGKQREFESRLADALQEL R L V G K Q 0 0 1 1 0 0 1 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 886.476 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;Q5TCI8;H0YAB0 P02545 226 233 LMNA Prelamin-A/C;Lamin-A/C yes no 2 0.0049551 98.523 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19831000 0 19831000 19831000 0 19831000 0 0 0 8260 1229 8442 30010;30011 45224;45225 45225 2 LVELNEDVRPHIR KNDNELLKLIPFLEKLVELNEDVRPHIRDR EKLVELNEDVRPHIRDRFRLHDLLPPD___ K L V I R D 0 2 1 1 0 0 2 0 1 1 2 0 0 0 1 0 0 0 0 2 0 0 13 1 1588.8685 A0A024R5Q8;Q05D32 A0A024R5Q8 442 454 CTDSPL2 CTD small phosphatase-like protein 2 yes no 4 0.001516 43.382 1 0.7223 0.9733 NaN 1 Median 0.7223 0.9733 NaN 1 0 Median NaN NaN NaN 0 0 Median 22148000 12048000 10101000 22148000 12048000 10101000 0 0 0 8261 149 8443 30012 45226 45226 1 LVENCVCLLR FIVQAEIGQKDSDSKLVENCVCLLRNLSYQ DSDSKLVENCVCLLRNLSYQVHREIPQAER K L V L R N 0 1 1 0 2 0 1 0 0 0 3 0 0 0 0 0 0 0 0 2 0 0 10 0 1274.6475 Q7KZJ3;A0A024R4Z0;A0A024R4Y7;Q96FS1;Q68DU0;C9JZR2;O60716 Q7KZJ3 252 261 CTNND1;DKFZp781O2021 Catenin delta-1 yes no 2 0.049749 43.808 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2391700 2391700 0 2391700 2391700 0 0 0 0 8262 130 8444 30013 45227 45227 1 LVEQLDIEETEQSK EEQSQNDEDNQGSEKLVEQLDIEETEQSKL KLVEQLDIEETEQSKLPQYLERFKALHSKL K L V S K L 0 0 0 1 0 2 4 0 0 1 2 1 0 0 0 1 1 0 0 1 0 0 14 0 1659.8203 Q6PKB3;G5EA06;B4DT94;A0A024RAJ1;Q92552;Q8N6F2;B4DKI9;D6RH20 Q6PKB3 121 134 MRPS27 28S ribosomal protein S27, mitochondrial yes no 2 0.00020291 99.011 2 1 0.71322 0.95776 127.27 2 Median 0.31824 0.38941 NaN 1 0 Median 1.5984 2.3556 NaN 1 0 Median 9626400 5386200 4240200 3756400 2926200 830220 5869900 2459900 3410000 8263 244 8445 30014;30015;30016 45228;45229;45230 45229 3 LVETDFSTPTPR HKSNGGIVWGNIKKKLVETDFSTPTPRRKT KKKLVETDFSTPTPRRKTPFNTDLGENSGI K L V P R R 0 1 0 1 0 0 1 0 0 0 1 0 0 1 2 1 3 0 0 1 0 0 12 0 1361.6827 Q6P0N0 Q6P0N0 1080 1091 MIS18BP1 Mis18-binding protein 1 yes yes 2 0.00024657 78.655 1 1 0.52097 0.71314 25.479 2 Median 0.61848 0.85393 NaN 1 0 Median 0.43883 0.59557 NaN 1 0 Median 9471600 5909000 3562600 3961000 2387700 1573200 5510700 3521300 1989400 8264 1588 8446 30017;30018 45231;45232 45231 2 LVETLEDQELK EELRQHAACKLDLQKLVETLEDQELKENVE DLQKLVETLEDQELKENVEIICNLQQLITQ K L V L K E 0 0 0 1 0 1 3 0 0 0 3 1 0 0 0 0 1 0 0 1 0 0 11 0 1315.6871 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 453 463 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 4.3944E-07 145.9 4 2 0.85342 1.1144 3.9918 6 Median 0.87763 1.105 2.7188 4 0 Median 0.72833 1.1654 2.8036 2 0 Median 279020000 150390000 128630000 159470000 79089000 80377000 119550000 71300000 48252000 8265 1216 8447 30019;30020;30021;30022;30023;30024 45233;45234;45235;45236;45237;45238;45239;45240;45241;45242;45243 45233 11 LVEVPAAPVR TPSARLVPASAPPARLVEVPAAPVRVVETS APPARLVEVPAAPVRVVETSALLCTAQHLA R L V V R V 2 1 0 0 0 0 1 0 0 0 1 0 0 0 2 0 0 0 0 3 0 0 10 0 1049.6233 A0A0A8K8C0;Q9H6W3 A0A0A8K8C0 132 141 URLC2;NO66 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 yes no 2 0.016403 54.549 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8266 411 8448 30025 45244 45244 1 LVEVQCLLLLEVLGGSHK VFPSRAKRQGDIWNKLVEVQCLLLLEVLGG VQCLLLLEVLGGSHKHAVDGAVKKLTKLWK K L V H K H 0 0 0 0 1 1 2 2 1 0 6 1 0 0 0 1 0 0 0 3 0 0 18 0 2006.1234 E1NZA1;Q92616;B4DM32 E1NZA1 142 159 PRIC295;GCN1L1 Translational activator GCN1 yes no 3 0.0010338 45.704 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8267 1000 8449 30026 45245 45245 1 LVFAAYGNVFSAFAR NSVPQDICCMAADGRLVFAAYGNVFSAFAR LVFAAYGNVFSAFARNKEIVHTFKGHKAEI R L V A R N 4 1 1 0 0 0 0 1 0 0 1 0 0 3 0 1 0 0 1 2 0 0 15 0 1631.846 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 80 94 WDR36 WD repeat-containing protein 36 yes no 2 7.0876E-15 125.97 5 0.81269 1.0826 19.558 2 Median 0.81269 1.0826 19.558 2 0 Median NaN NaN NaN 0 0 Median 41275000 16261000 25014000 41275000 16261000 25014000 0 0 0 8268 404 8450 30027;30028;30029;30030;30031 45246;45247;45248;45249;45250;45251;45252 45252 7 LVFLGEQSVGK MSTGGDFGNPLRKFKLVFLGEQSVGKTSLI RKFKLVFLGEQSVGKTSLITRFMYDSFDNT K L V G K T 0 0 0 0 0 1 1 2 0 0 2 1 0 1 0 1 0 0 0 2 0 0 11 0 1175.655 F5H3K7;F5GX61;Q6FGX3;Q53ET8;A0A024R5J5;A0A024R5H8;P20340;C9J0I2;Q6AZ91;Q9NRW1 F5H3K7 16 26 RAB6A;RAB6B Ras-related protein Rab-6A;Ras-related protein Rab-6B yes no 2 0.0038022 57.96 1 0.59646 0.76255 NaN 1 Median 0.59646 0.76255 NaN 1 0 Median NaN NaN NaN 0 0 Median 4094900 2552800 1542100 4094900 2552800 1542100 0 0 0 8269 144 8451 30032 45253 45253 1 LVFLGLDNAGK SSVLQFLGLYKKSGKLVFLGLDNAGKTTLL KSGKLVFLGLDNAGKTTLLHMLKDDRLGQH K L V G K T 1 0 1 1 0 0 0 2 0 0 3 1 0 1 0 0 0 0 0 1 0 0 11 0 1145.6445 Q8NG23;Q5SQT9;Q9NR31;Q5SQT8;Q6FID4;B2R679;X1WI22;D6RAA2;D6RDB2;D6RD69;Q53F37;Q9Y6B6 Q8NG23 28 38 SAR1A;SARA1;SAR1B GTP-binding protein SAR1a;GTP-binding protein SAR1b yes no 2 0.0016771 108.57 3 0.67204 0.85513 8.5265 2 Median 0.67204 0.85513 8.5265 2 0 Median NaN NaN NaN 0 0 Median 17093000 10799000 6293800 17093000 10799000 6293800 0 0 0 8270 1564 8452 30033;30034;30035 45254;45255;45256 45254 3 LVFPGAQR RDPSSRLKMFAKELKLVFPGAQRMNRGRHE MFAKELKLVFPGAQRMNRGRHEVGALVRAC K L V Q R M 1 1 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 1 0 0 8 0 886.50249 H0Y714;Q96G21;E7ENR5;B8ZZ47;B9A008 H0Y714 95 102 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 2 0.0056419 88.734 2 0.8915 1.2027 10.647 2 Median 0.8915 1.2027 10.647 2 0 Median NaN NaN NaN 0 0 Median 34357000 17509000 16848000 34357000 17509000 16848000 0 0 0 8271 1094 8453 30036;30037 45257;45258 45258 2 LVFSNVNLK ACSDRPTVIYSSNHKLVFSNVNLKEVNYMC YSSNHKLVFSNVNLKEVNYMCPLNSDGYPD K L V L K E 0 0 2 0 0 0 0 0 0 0 2 1 0 1 0 1 0 0 0 2 0 0 9 0 1032.5968 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 666 674 DDB1 DNA damage-binding protein 1 yes no 2 0.0010777 105.04 4 2 0.78041 1.0461 10.256 6 Median 0.80624 1.0164 5.4371 4 0 Median 0.75485 1.2033 3.7526 2 0 Median 263350000 137320000 126030000 184720000 95220000 89499000 78632000 42102000 36530000 8272 1520 8454 30038;30039;30040;30041;30042;30043 45259;45260;45261;45262;45263;45264;45265;45266;45267;45268;45269;45270 45268 12 LVGDVDFEGVR VGINRVHDPVTAKPKLVGDVDFEGVRQKAG AKPKLVGDVDFEGVRQKAGYITPVPGGVGP K L V V R Q 0 1 0 2 0 0 1 2 0 0 1 0 0 1 0 0 0 0 0 3 0 0 11 0 1204.6088 B2R7W0;P13995;B4DY35;B9A062 B2R7W0 283 293 MTHFD2 Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes no 2 0.024842 81.338 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4786800 4786800 0 4786800 4786800 0 0 0 0 8273 709 8455 30044;30045 45271;45272 45271 2 LVGIISSR FCGIPITDTGRMGSRLVGIISSRDIDFLKE TGRMGSRLVGIISSRDIDFLKEEEHDCFLE R L V S R D 0 1 0 0 0 0 0 1 0 2 1 0 0 0 0 2 0 0 0 1 0 0 8 0 843.5178 P12268;H0Y4R1;B7Z1G4;Q6QE17;E7ETK5 P12268 154 161 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2 0.031653 50.703 2 5.242 7.3643 1.7255 2 Median NaN NaN NaN 0 0 Median 5.242 7.3643 1.7255 2 0 Median 20479000 3479400 17000000 0 0 0 20479000 3479400 17000000 8274 1261 8456 30046;30047 45273;45274 45273 2 LVGIVTSR FSGIPITETGTMGSKLVGIVTSRDIDFLAE TGTMGSKLVGIVTSRDIDFLAEKDHTTLLS K L V S R D 0 1 0 0 0 0 0 1 0 1 1 0 0 0 0 1 1 0 0 2 0 0 8 0 843.5178 B4DNJ7;B3KRZ3;Q6ZNB1;Q5H9Q6;P20839;A0A024R725;C9J381;C9K0R9;C9J029;H7C5T1;H7C511 B4DNJ7 154 161 IMPDH;DKFZp781N0678;IMPDH1 Inosine-5-monophosphate dehydrogenase;Inosine-5-monophosphate dehydrogenase 1 yes no 2 0.014793 65.252 2 0.37081 0.51696 NaN 1 Median 0.37081 0.51696 NaN 1 0 Median NaN NaN NaN 0 0 Median 12552000 10727000 1824900 12552000 10727000 1824900 0 0 0 8275 772 8457 30048;30049 45275;45276 45275 2 LVGLESFSLAFASVQK LLKNLSQEIIELLKKLVGLESFSLAFASVQ VGLESFSLAFASVQKQANEKRALRKKRKAL K L V Q K Q 2 0 0 0 0 1 1 1 0 0 3 1 0 2 0 3 0 0 0 2 0 0 16 0 1694.9243 O75691;B4DN27 O75691 2703 2718 UTP20 Small subunit processome component 20 homolog yes no 2 7.3724E-05 84.289 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2198900 2198900 0 2198900 2198900 0 0 0 0 8276 1207 8458 30050 45277;45278 45277 2 LVGQGASAVLLDLPNSGGEAQAK ITGGASGLGLATAERLVGQGASAVLLDLPN VLLDLPNSGGEAQAKKLGNNCVFAPADVTS R L V A K K 4 0 1 1 0 2 1 4 0 0 4 1 0 0 1 2 0 0 0 2 0 0 23 0 2194.1594 A0A0S2Z410;Q99714;Q5H928;A0A0S2Z434 A0A0S2Z410 30 52 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2 1.7172E-85 224.64 4 1 0.32043 0.38873 125.67 5 Median 0.30706 0.37843 4.4264 4 0 Median 3.9558 6.301 NaN 1 0 Median 121210000 74606000 46604000 90890000 68451000 22440000 30320000 6155700 24165000 8277 458 8459 30051;30052;30053;30054;30055 45279;45280;45281;45282;45283;45284;45285;45286;45287 45279 9 LVGQSIIAYLQK NRKYDEVLHMVRNAKLVGQSIIAYLQKKGY NAKLVGQSIIAYLQKKGYPEVALHFVKDEK K L V Q K K 1 0 0 0 0 2 0 1 0 2 2 1 0 0 0 1 0 0 1 1 0 0 12 0 1331.7813 P53621 P53621 620 631 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 4.993E-11 142.36 4 1 0.57043 0.73167 96.705 4 Median 0.51759 0.65457 16.274 3 0 Median 3.3555 4.6405 NaN 1 0 Median 36652000 22001000 14650000 31793000 20993000 10801000 4858200 1008600 3849700 8278 1371 8460 30056;30057;30058;30059;30060 45288;45289;45290;45291;45292;45293;45294 45290 7 LVGSVNLFSDENVPR LFLLAQQKVPSKLKKLVGSVNLFSDENVPR LVGSVNLFSDENVPRLVNVLKMAASSVKKD K L V P R L 0 1 2 1 0 0 1 1 0 0 2 0 0 1 1 2 0 0 0 3 0 0 15 0 1644.8471 Q9BQG0;I3L1L3;B4DZZ1 Q9BQG0 232 246 MYBBP1A Myb-binding protein 1A yes no 2 1.4478E-50 227.81 4 2 0.67821 0.95935 7.6972 6 Median 0.68533 0.91166 6.1532 4 0 Median 0.66007 1.0368 2.2697 2 0 Median 130250000 73372000 56882000 68291000 36314000 31977000 61963000 37058000 24904000 8279 1708 8461 30061;30062;30063;30064;30065;30066 45295;45296;45297;45298;45299;45300;45301;45302;45303;45304;45305 45295 11 LVHLPSCTVFSNFPVIK EILAIASEKMKEAVRLVHLPSCTVFSNFPV HLPSCTVFSNFPVIKNKNISHVHTMDFSPR R L V I K N 0 0 1 0 1 0 0 0 1 1 2 1 0 2 2 2 1 0 0 3 0 0 17 0 1957.0495 Q9Y5J1;B2RAX6 Q9Y5J1 501 517 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 3 3.0676E-34 179.55 5 2 0.9374 1.1898 18.562 5 Median 1.0317 1.3075 12.177 3 0 Median 0.65241 0.9989 9.6932 2 0 Median 251600000 150150000 101450000 204360000 121400000 82963000 47240000 28750000 18491000 8280 1830 8462 30067;30068;30069;30070;30071;30072;30073 45306;45307;45308;45309;45310;45311;45312;45313;45314;45315;45316;45317 45308 12 LVIASTLYEDGTLDDGEYNPTDDRPSR VNIQIYPVDLGDKFRLVIASTLYEDGTLDD LDDGEYNPTDDRPSRADQFEYVMYGKVYRI R L V S R A 1 2 1 5 0 0 2 2 0 1 3 0 0 0 2 2 3 0 2 1 0 0 27 1 3011.3996 C9JLU1;P52434 C9JLU1 58 84 POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3 yes no 3 2.2315E-07 80.83 2 0.41944 0.58056 NaN 1 Median 0.41944 0.58056 NaN 1 0 Median NaN NaN NaN 0 0 Median 14056000 10421000 3635200 14056000 10421000 3635200 0 0 0 8281 940 8463 30074;30075 45318;45319;45320;45321;45322 45322 5 LVIDVIR VKPTDEKLRELKGAKLVIDVIRYEPPHIKK LRELKGAKLVIDVIRYEPPHIKKALQYACG K L V I R Y 0 1 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 2 0 0 7 0 826.52764 Q14683;G8JLG1;Q6P2R1;Q6MZR8;A8K7A6;B7Z709 Q14683 593 599 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.011331 105.27 1 1 0.71563 1.0008 36.808 2 Median 0.56301 0.77145 NaN 1 0 Median 0.90964 1.2983 NaN 1 0 Median 21805000 12806000 8999000 12456000 8271200 4184800 9349200 4535000 4814200 8282 1492 8464 30076;30077 45323;45324;45325 45324 3 LVIECGADCNILSK ALMKACKRGNSDIVRLVIECGADCNILSKH RLVIECGADCNILSKHQNSALHFAKQSNNV R L V S K H 1 0 1 1 2 0 1 1 0 2 2 1 0 0 0 1 0 0 0 1 0 0 14 0 1590.7746 Q99549 Q99549 685 698 MPHOSPH8 M-phase phosphoprotein 8 yes yes 2 1.8881E-05 114.71 1 0.53283 0.65604 NaN 1 Median 0.53283 0.65604 NaN 1 0 Median NaN NaN NaN 0 0 Median 1393700 825870 567830 1393700 825870 567830 0 0 0 8283 1705 8465 30078 45326;45327 45326 2 LVIIEGDLER IAEEADRKYEEVARKLVIIEGDLERTEERA EVARKLVIIEGDLERTEERAELAESRCREM K L V E R T 0 1 0 1 0 0 2 1 0 2 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1155.6499 Q5HYB6;B2RDE1;A0A0S2Z4I4;A0A0S2Z4G8;A0A0S2Z4G4;A0A087WWU8;Q8NAG3;B4DWT5;Q5VU61;J3KN67;M1VPF4;P06753;Q6LDX7;Q5VU62;B4DQ80;Q8NAH0 Q5HYB6 117 126 DKFZp686J1372;TPM3;TPM3-ROS1;HEL-S-82p Tyrosine-protein kinase receptor;Tropomyosin alpha-3 chain yes no 2 2.7234E-05 75.378 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8284 465 8466 30079;30080 45328;45329 45328 2 LVILANNCPALR GYKQTLKMIRQGKAKLVILANNCPALRKSE KAKLVILANNCPALRKSEIEYYAMLAKTGV K L V L R K 2 1 2 0 1 0 0 0 0 1 3 0 0 0 1 0 0 0 0 1 0 0 12 0 1352.7598 E5RI99;A0A024R9D3;P62888;E5RJH3 E5RI99 45 56 RPL30 60S ribosomal protein L30 yes no 2 8.8273E-45 193.75 7 2 0.69574 0.95875 38.89 6 Median 0.77539 1.0617 10.271 4 0 Median 0.30441 0.48685 4.4721 2 0 Median 860160000 512210000 347950000 771910000 445700000 326200000 88257000 66512000 21745000 8285 219 8467 30081;30082;30083;30084;30085;30086;30087;30088;30089 45330;45331;45332;45333;45334;45335;45336;45337;45338;45339;45340;45341;45342;45343;45344;45345;45346;45347;45348 45339 19 LVILANNCPALRK GYKQTLKMIRQGKAKLVILANNCPALRKSE AKLVILANNCPALRKSEIEYYAMLAKTGVH K L V R K S 2 1 2 0 1 0 0 0 0 1 3 1 0 0 1 0 0 0 0 1 0 0 13 1 1480.8548 E5RI99;A0A024R9D3;P62888 E5RI99 45 57 RPL30 60S ribosomal protein L30 yes no 2;3 9.3869E-08 123.35 8 2 0.75738 0.99722 25.339 10 Median 0.76626 1.0115 7.3269 8 0 Median 0.37109 0.57031 11.24 2 0 Median 697180000 367310000 329870000 685610000 359340000 326280000 11566000 7973800 3592300 8286 219 8468 30090;30091;30092;30093;30094;30095;30096;30097;30098;30099 45349;45350;45351;45352;45353;45354;45355;45356;45357;45358;45359;45360;45361;45362;45363 45357 15 LVILEGELER MKDEEKMEIQEVARKLVILEGELERAEERA EVARKLVILEGELERAEERAEVSELKCGDL K L V E R A 0 1 0 0 0 0 3 1 0 1 3 0 0 0 0 0 0 0 0 1 0 0 10 0 1169.6656 B4DVY2;V9HW56;P67936;V9HW25;Q5TCU3;CON__Q3SX28;A7XZE4;Q5TCU8;P07951;K7ERG3;K7ENT6;B4DGC2;K7EMU5;U3KQK2;K7EPV9 B4DVY2 114 123 HEL-S-108;TPM4;HEL-S-273;TPM2;TPM2b Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 2 0.016689 56.258 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4292400 0 4292400 0 0 0 4292400 0 4292400 + 8287 864 8469 30100 45364 45364 1 LVINGNPITIFQER THGKFHGTVKAENGKLVINGNPITIFQERD KLVINGNPITIFQERDPSKIKWGDAGAEYV K L V E R D 0 1 2 0 0 1 1 1 0 3 1 0 0 1 1 0 1 0 0 1 0 0 14 0 1612.8937 V9HVZ4;P04406;Q2TSD0;Q0QET7;B4DRV9 V9HVZ4 67 80 HEL-S-162eP;GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 2 0.00023839 98.898 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25422000 25422000 0 20644000 20644000 0 4777900 4777900 0 8288 1231 8470 30101;30102;30103 45365;45366;45367 45366 3 LVINGNPITIFQERDPSK THGKFHGTVKAENGKLVINGNPITIFQERD NGNPITIFQERDPSKIKWGDAGAEYVVEST K L V S K I 0 1 2 1 0 1 1 1 0 3 1 1 0 1 2 1 1 0 0 1 0 0 18 1 2040.1004 V9HVZ4;P04406;Q2TSD0;Q0QET7;B4DRV9 V9HVZ4 67 84 HEL-S-162eP;GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 3 4.3385E-10 92.427 4 2 0.64668 0.85635 110.02 6 Median 0.62099 0.81227 8.0493 4 0 Median 3.9541 6.7199 13.884 2 0 Median 200530000 99387000 101150000 138510000 86602000 51906000 62026000 12785000 49242000 8289 1231 8471 30104;30105;30106;30107;30108;30109 45368;45369;45370;45371;45372;45373;45374;45375;45376;45377 45374 10 LVINTEEVFRPYAK GNPIVPLNIRLFLAKLVINTEEVFRPYAKH KLVINTEEVFRPYAKHWLSPLLQLAASENN K L V A K H 1 1 1 0 0 0 2 0 0 1 1 1 0 1 1 0 1 0 1 2 0 0 14 1 1677.909 P78527 P78527 2149 2162 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.0001582 122.46 4 2 0.465 0.61098 35.109 6 Median 0.42264 0.5539 12.872 4 0 Median 0.67616 1.067 8.9979 2 0 Median 186990000 125470000 61520000 161150000 107830000 53322000 25845000 17647000 8198200 8290 1427 8472 30110;30111;30112;30113;30114;30115 45378;45379;45380;45381;45382;45383;45384;45385;45386;45387;45388 45380 11 LVIQDK RRRREGKTDYYARKRLVIQDKNKYNTPKYR KTDYYARKRLVIQDKNKYNTPKYRMIVRVT R L V D K N 0 0 0 1 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 6 0 714.42759 A2RUM7;P46777;Q59GX9;Q9BUV4;R4GNJ2 A2RUM7 36 41 RPL5 60S ribosomal protein L5 yes no 2 0.041021 77.748 1 0.75858 0.92959 NaN 1 Median 0.75858 0.92959 NaN 1 0 Median NaN NaN NaN 0 0 Median 23117000 13585000 9532400 23117000 13585000 9532400 0 0 0 8291 540 8473 30116 45389 45389 1 LVIQSYFVQTLK QEFIICFHKHVRIERLVIQSYFVQTLKIEK IERLVIQSYFVQTLKIEKSTSKEPVDFEQW R L V L K I 0 0 0 0 0 2 0 0 0 1 2 1 0 1 0 1 1 0 1 2 0 0 12 0 1437.8232 A6NIR2;X6R7Y7;Q9Y547 A6NIR2 62 73 HSPB11 Intraflagellar transport protein 25 homolog yes no 2 0.0013071 74.162 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3093700 3093700 0 3093700 3093700 0 0 0 0 8292 570 8474 30117 45390 45390 1 LVISHEEELIPLHK KGPTFRISGVQVNAKLVISHEEELIPLHKS KLVISHEEELIPLHKSIPSDPEERKQYTIP K L V H K S 0 0 0 0 0 0 3 0 2 2 3 1 0 0 1 1 0 0 0 1 0 0 14 0 1655.9247 O14646 O14646 1213 1226 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 3;4 1.4292E-05 92.151 3 2 0.59234 0.77385 4.1748 5 Median 0.60484 0.77329 3.112 3 0 Median 0.54271 0.81062 0.18648 2 0 Median 75691000 50379000 25312000 57149000 37951000 19198000 18542000 12429000 6113900 8293 1169 8475 30118;30119;30120;30121;30122 45391;45392;45393;45394;45395;45396;45397;45398 45397 8 LVIVGDGACGK ______________________________ IRKKLVIVGDGACGKTCLLIVFSKDQFPEV K L V G K T 1 0 0 1 1 0 0 3 0 1 1 1 0 0 0 0 0 0 0 2 0 0 11 0 1087.5696 B4DKN9;Q5JR08;A0A024R324;A0A024R0I3;P61586;P08134;Q5JR07;C9JNR4;E9PQH6;C9JX21;Q5JR05;E9PLA2;C9JRM1;Q5JR06;E9PN11;U3KQA9;U3KQV3 B4DKN9 8 18 RHOC;RHOA;hCG_2043376 Transforming protein RhoA;Rho-related GTP-binding protein RhoC yes no 2 0.023894 71.349 1 0.67094 0.85995 NaN 1 Median 0.67094 0.85995 NaN 1 0 Median NaN NaN NaN 0 0 Median 8787800 5233600 3554300 8787800 5233600 3554300 0 0 0 8294 38 8476 30123 45399 45399 1 LVIVHPEVTVK ASEQGLAKAVASVARLVIVHPEVTVKKMCS SVARLVIVHPEVTVKKMCSLAVVNLGTHKF R L V V K K 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 4 0 0 11 0 1232.7493 Q9HBB9;Q8WUM5;Q9HC39;I3L2C7;P57678 Q9HBB9 541 551 GEMIN4 Gem-associated protein 4 yes no 3 0.0053821 72.652 2 0.17936 0.23598 44.171 2 Median 0.17936 0.23598 44.171 2 0 Median NaN NaN NaN 0 0 Median 4275200 3432400 842890 4275200 3432400 842890 0 0 0 8295 1667 8477 30124;30125 45400;45401;45402 45401 3 LVLADLLEPVK KVSEFNVSSEGSGEKLVLADLLEPVKTSSS SGEKLVLADLLEPVKTSSSLATVKKQLSRV K L V V K T 1 0 0 1 0 0 1 0 0 0 4 1 0 0 1 0 0 0 0 2 0 0 11 0 1208.738 Q9BVJ6;B4E343;O60531 Q9BVJ6 85 95 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 2.5141E-07 148.94 5 2 0.95843 1.2624 7.2189 5 Median 1.0651 1.3309 9.6005 3 0 Median 0.78128 1.2476 1.6694 2 0 Median 221710000 113740000 107960000 125190000 61350000 63841000 96514000 52394000 44120000 8296 1719 8478 30126;30127;30128;30129;30130;30131;30132 45403;45404;45405;45406;45407;45408;45409;45410;45411;45412;45413;45414 45404 12 LVLDEDEETKEPLVQVHR EIEDASPTKCPITTKLVLDEDEETKEPLVQ DEDEETKEPLVQVHRNMVIKLKPHQVDGVQ K L V H R N 0 1 0 2 0 1 4 0 1 0 3 1 0 0 1 0 1 0 0 3 0 0 18 1 2148.1063 A4LAA3;P46100 A4LAA3 1537 1554 ATRX Transcriptional regulator ATRX yes no 4 0.00020642 83.966 4 0.51514 0.68846 10.629 4 Median 0.51514 0.68846 10.629 4 0 Median NaN NaN NaN 0 0 Median 57744000 36876000 20868000 57744000 36876000 20868000 0 0 0 8297 556 8479 30133;30134;30135;30136 45415;45416;45417;45418 45415 4 LVLDPYLLK IGTKMQKTAKVRVTRLVLDPYLLKYFNKRK KVRVTRLVLDPYLLKYFNKRKTYFAHDALQ R L V L K Y 0 0 0 1 0 0 0 0 0 0 4 1 0 0 1 0 0 0 1 1 0 0 9 0 1072.6532 E9PE17;Q8IY71;I3L0E3;Q9Y2R5 E9PE17 33 41 MRPS17;hCG_1984214 28S ribosomal protein S17, mitochondrial yes no 2 0.020635 80.438 2 0.46558 0.60888 23.017 2 Median 0.46558 0.60888 23.017 2 0 Median NaN NaN NaN 0 0 Median 7111800 4318200 2793600 7111800 4318200 2793600 0 0 0 8298 1022 8480 30137;30138 45419;45420 45420 2 LVLEMVHHNTASLEK VAELLKEEFPAWYEKLVLEMVHHNTASLEK LVLEMVHHNTASLEKLVDTAWLEIMTKYAV K L V E K L 1 0 1 0 0 0 2 0 2 0 3 1 1 0 0 1 1 0 0 2 0 0 15 0 1719.8978 Q9UIG0 Q9UIG0 87 101 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 0.0040301 47.548 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3994700 0 3994700 0 0 0 3994700 0 3994700 8299 1786 8481 30139 45421 45421 825 1 LVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEK PDVTRPEGKDFSIHRLVLGTHTSDEQNHLV NDDAQFDASHYDSEKGEFGGFGSVSGKIEI R L V E K G 3 0 2 5 0 3 2 1 3 1 4 1 0 1 1 4 2 0 1 3 0 0 37 0 4092.9301 Q09028;E9PNS6;C9JPP3 Q09028 66 102 RBBP4 Histone-binding protein RBBP4 no no 4 4.5989E-05 35.96 3 0.56075 0.69904 38.71 3 Median 0.56075 0.69904 38.71 3 0 Median NaN NaN NaN 0 0 Median 61902000 35633000 26269000 61902000 35633000 26269000 0 0 0 8300 1452 8482 30140;30141;30142 45422;45423;45424;45425;45426;45427 45425 6 LVLILNK CPQVEEAIVQSGQKKLVLILNKSDLVPKEN IVQSGQKKLVLILNKSDLVPKENLESWLNY K L V N K S 0 0 1 0 0 0 0 0 0 1 3 1 0 0 0 0 0 0 0 1 0 0 7 0 811.55312 A0A024R2Z6;Q9BVP2 A0A024R2Z6 161 167 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.0025954 138.53 4 2 0.63668 0.80308 5.7059 5 Median 0.65278 0.80466 4.7502 3 0 Median 0.5202 0.76505 3.758 2 0 Median 67658000 40767000 26891000 54793000 32837000 21956000 12865000 7930200 4934500 8301 95 8483 30143;30144;30145;30146;30147;30148 45428;45429;45430;45431;45432;45433;45434;45435 45429 8 LVLLFSGK ______________________________ PLGGAPRLVLLFSGKRKSGKDFVTEALQSR R L V G K R 0 0 0 0 0 0 0 1 0 0 3 1 0 1 0 1 0 0 0 1 0 0 8 0 875.54804 Q6FGV9;Q15126 Q6FGV9 10 17 PMVK Phosphomevalonate kinase yes no 2 0.0044088 117.16 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 486490 486490 0 486490 486490 0 0 0 0 8302 1506 8484 30149 45436 45436 1 LVLLGESAVGK RPNGPAAGNKICQFKLVLLGESAVGKSSLV CQFKLVLLGESAVGKSSLVLRFVKGQFHEY K L V G K S 1 0 0 0 0 0 1 2 0 0 3 1 0 0 0 1 0 0 0 2 0 0 11 0 1084.6492 A0A024R1U4;P51148;K7ERI8;K7ERQ8;F8VVK3;F8WCY6;F8WD79;F8VPW9;F8VSF8;F8VWZ7;F8VWU4;F8VVZ0;F8VUA5;A0A024RB09;P61020;A0A0A1HAN9;A0A024R2K1;P20339 A0A024R1U4 24 34 RAB5C;RAB5A;RAB5B Ras-related protein Rab-5C;Ras-related protein Rab-5B;Ras-related protein Rab-5A no no 2 0.0041771 94.692 3 0.64991 0.82274 11.613 3 Median 0.64991 0.82274 11.613 3 0 Median NaN NaN NaN 0 0 Median 22828000 13639000 9189500 22828000 13639000 9189500 0 0 0 8303 71;86 8485 30150;30151;30152 45437;45438;45439;45440 45437 4 LVLMSATGDNER LILLKGLQRLNPALRLVLMSATGDNERFSR ALRLVLMSATGDNERFSRYFGGCPVIKVPG R L V E R F 1 1 1 1 0 0 1 1 0 0 2 0 1 0 0 1 1 0 0 1 0 0 12 0 1304.6395 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 559 570 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.00021699 75.387 2 0.67909 0.88276 NaN 1 Median NaN NaN NaN 0 0 Median 0.67909 0.88276 NaN 1 0 Median 5905500 4173100 1732300 0 0 0 5905500 4173100 1732300 8304 93 8486 30153;30154 45441;45442 45442 53 2 LVLPAPQISDAELQEVVK LQTSGVSEFTKKRSKLVLPAPQISDAELQE PAPQISDAELQEVVKVGQASEIARQTAEES K L V V K V 2 0 0 1 0 2 2 0 0 1 3 1 0 0 2 1 0 0 0 3 0 0 18 0 1948.0881 B4DSH1;B3KY60;Q99459 B4DSH1 268 285 CDC5L Cell division cycle 5-like protein yes no 2 5.062E-10 113.76 4 1 0.95456 1.2314 19.602 5 Median 0.92928 1.208 11.369 4 0 Median 1.1156 1.6873 NaN 1 0 Median 38654000 19239000 19416000 22346000 11630000 10716000 16308000 7608600 8699700 8305 792 8487 30155;30156;30157;30158;30159 45443;45444;45445;45446;45447;45448;45449;45450;45451 45444 9 LVLPPPDPLDLPLR ______________________________ RLVLPPPDPLDLPLRAVELGCTGHWELLNL R L V L R A 0 1 0 2 0 0 0 0 0 0 5 0 0 0 5 0 0 0 0 1 0 0 14 0 1553.9181 B4DSY1;A0A024RCU1;Q9NPK3;Q96BC0;O76046;Q15477;F8WDE8;B4DF09;B4E0B4 B4DSY1 7 20 SKIV2L;SKI2W Helicase SKI2W yes no 2 0.0105 92.611 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1688400 1688400 0 1688400 1688400 0 0 0 0 8306 304 8488 30160;30161;30162 45452;45453;45454 45454 3 LVLPSNTPNVR SKQSKVIPKNRIHHKLVLPSNTPNVRRTKR IHHKLVLPSNTPNVRRTKRTRLKPLEYWRG K L V V R R 0 1 2 0 0 0 0 0 0 0 2 0 0 0 2 1 1 0 0 2 0 0 11 0 1208.6877 Q03188;H0Y8J2;H0Y9W1 Q03188 728 738 CENPC Centromere protein C yes no 2 0.0022943 83.948 4 2 0.6704 0.90319 16.817 6 Median 0.71267 0.95031 12.473 4 0 Median 0.50828 0.76029 5.1175 2 0 Median 97104000 57708000 39397000 63125000 36060000 27065000 33979000 21648000 12331000 8307 1439 8489 30163;30164;30165;30166;30167;30168 45455;45456;45457;45458;45459;45460;45461;45462 45460 8 LVLSFDEEK RNKKKKRDGDDRRPRLVLSFDEEKRREYLT DDRRPRLVLSFDEEKRREYLTGFHKRKVER R L V E K R 0 0 0 1 0 0 2 0 0 0 2 1 0 1 0 1 0 0 0 1 0 0 9 0 1078.5546 B4DGP7;V9GYY5;B3KQ09;A0A024R1M6;Q9UGY1 B4DGP7 18 26 MGC3731;NOL12 Nucleolar protein 12 yes no 2 0.003645 78.149 5 1 1.0956 1.3612 14.023 4 Median 1.1698 1.4315 8.6051 3 0 Median 0.73651 1.1118 NaN 1 0 Median 57618000 25608000 32009000 41677000 16613000 25064000 15940000 8994900 6945600 8308 60 8490 30169;30170;30171;30172;30173;30174 45463;45464;45465;45466;45467;45468 45467 6 LVLSLQPIPLK HIFLLILRALQLLTRLVLSLQPIPLKSATA LLTRLVLSLQPIPLKSATAKGKKPSKERLT R L V L K S 0 0 0 0 0 1 0 0 0 1 4 1 0 0 2 1 0 0 0 1 0 0 11 0 1219.7904 A0A024R2M8;X5DRB1;A8K146;Q01831;D9I4E1;D2CPK4 A0A024R2M8 315 325 XPC DNA repair protein complementing XP-C cells yes no 2 4.8572E-07 145.16 4 2 0.67512 0.91833 13.889 6 Median 0.67512 0.85671 11.678 4 0 Median 0.68087 1.0304 9.1185 2 0 Median 65163000 40703000 24460000 36122000 22682000 13440000 29041000 18021000 11020000 8309 89 8491 30175;30176;30177;30178;30179;30180 45469;45470;45471;45472;45473;45474;45475;45476;45477;45478;45479;45480;45481;45482;45483 45471 15 LVLSTLSGRPVK AHSLSYAGCNFLRQRLVLSTLSGRPVKIRK RQRLVLSTLSGRPVKIRKIRARDDNPGLRD R L V V K I 0 1 0 0 0 0 0 1 0 0 3 1 0 0 1 2 1 0 0 2 0 0 12 1 1268.7816 Q9Y2P8;Q5VYW8 Q9Y2P8 20 31 RCL1 RNA 3-terminal phosphate cyclase-like protein yes no 2;3 1.8372E-05 80.871 4 3 0.78347 1.0461 15.72 7 Median 0.79466 1.0523 20.1 4 0 Median 0.72913 1.1322 11.304 3 0 Plateau 140950000 85774000 55176000 115630000 70292000 45340000 25319000 15482000 9836300 8310 1806 8492 30181;30182;30183;30184;30185;30186;30187 45484;45485;45486;45487;45488;45489;45490;45491;45492;45493 45489 10 LVLVGDGGTGK ______________________________ VQFKLVLVGDGGTGKTTFVKRHLTGEFEKK K L V G K T 0 0 0 1 0 0 0 4 0 0 2 1 0 0 0 0 1 0 0 2 0 0 11 0 1014.571 B5MDF5;P62826;J3KQE5;H0YFC6;Q96QB7;Q0EFC9 B5MDF5 13 23 RAN;TC4 GTP-binding nuclear protein Ran yes no 2 2.0305E-08 129.38 4 2 0.6866 0.86193 45.36 6 Median 0.64051 0.81279 5.9432 4 0 Median 1.2966 1.9788 3.6989 2 0 Median 268060000 154370000 113700000 223160000 134430000 88727000 44908000 19937000 24971000 8311 901 8493 30188;30189;30190;30191;30192;30193 45494;45495;45496;45497;45498;45499;45500 45498 7 LVLVSPTSEQYDSLLR GEALNGEPELDLTSKLVLVSPTSEQYDSLL VLVSPTSEQYDSLLRQMWERMDEGCGETIY K L V L R Q 0 1 0 1 0 1 1 0 0 0 4 0 0 0 1 3 1 0 1 2 0 0 16 0 1818.9727 A0A024R1S5;O00178 A0A024R1S5 56 71 GTPBP1 GTP-binding protein 1 yes no 2 0.015909 77.593 1 0.82139 1.1582 NaN 1 Median 0.82139 1.1582 NaN 1 0 Median NaN NaN NaN 0 0 Median 1853700 1176500 677210 1853700 1176500 677210 0 0 0 8312 65 8494 30194 45501 45501 0 LVMEEAPESYK KLADMGIAIRVASPKLVMEEAPESYKNVTD ASPKLVMEEAPESYKNVTDVVNTCHDAGIS K L V Y K N 1 0 0 0 0 0 3 0 0 0 1 1 1 0 1 1 0 0 1 1 0 0 11 0 1294.6115 Q9Y3I0 Q9Y3I0 466 476 RTCB tRNA-splicing ligase RtcB homolog yes yes 2 0.00030864 79.148 2 0.67564 1.0129 0.33824 2 Median NaN NaN NaN 0 0 Median 0.67564 1.0129 0.33824 2 0 Median 20225000 12266000 7959000 0 0 0 20225000 12266000 7959000 8313 1819 8495 30195;30196 45502;45503;45504;45505 45503 845 4 LVNELTEFAK FSQYLQQCPFDEHVKLVNELTEFAKTCVAD DEHVKLVNELTEFAKTCVADESHAGCEKSL K L V A K T 1 0 1 0 0 0 2 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 10 0 1162.6234 CON__P02769 CON__P02769 66 75 yes yes 2 3.2775E-05 103.55 1 0.11543 0.14649 NaN 1 Median 0.11543 0.14649 NaN 1 0 Median NaN NaN NaN 0 0 Median 13328000 12187000 1141400 13328000 12187000 1141400 0 0 0 + 8314 952 8496 30197 45506 45506 1 LVNHFVEEFK TAGDTHLGGEDFDNRLVNHFVEEFKRKHKK DFDNRLVNHFVEEFKRKHKKDISQNKRAVR R L V F K R 0 0 1 0 0 0 2 0 1 0 1 1 0 2 0 0 0 0 0 2 0 0 10 0 1260.6503 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DI39;B4DWK5;B4DNT8;B4DFN9;B4DVU9;B4E1S9;B4E388;V9GZ37;B3KTT5;B4DNV4 A8K5I0 237 246 HEL-S-103;HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 3 0.0068531 72.848 3 1 0.76858 0.96526 42.05 4 Median 0.79253 0.9854 3.9194 3 0 Plateau 1.4529 2.1908 NaN 1 0 Median 84398000 46333000 38065000 70509000 40636000 29873000 13888000 5696600 8191500 8315 439 8497 30198;30199;30200;30201 45507;45508;45509;45510 45507 4 LVNLQHLDLLNNK LSKNKLQQLPADFGRLVNLQHLDLLNNKLV GRLVNLQHLDLLNNKLVTLPVSFAQLKNLK R L V N K L 0 0 3 1 0 1 0 0 1 0 5 1 0 0 0 0 0 0 0 1 0 0 13 0 1532.8675 Q96AG4 Q96AG4 84 96 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2;3 6.7628E-09 136.93 4 4 0.70726 0.991 40.527 8 Median 0.53183 0.68835 7.0164 4 0 Median 0.91732 1.5074 4.1668 4 0 Linear 601640000 348950000 252690000 346770000 219170000 127600000 254870000 129780000 125090000 8316 1681 8498 30202;30203;30204;30205;30206;30207;30208;30209 45511;45512;45513;45514;45515;45516;45517;45518;45519;45520;45521;45522;45523;45524 45520 14 LVNQQLLADPLVPPQLTIK IEGANYFQQANELSKLVNQQLLADPLVPPQ QLLADPLVPPQLTIKDFYMTDSISRASQTM K L V I K D 1 0 1 1 0 3 0 0 0 1 5 1 0 0 3 0 1 0 0 2 0 0 19 0 2099.2354 B4DJ81;E5KRK5;P28331;Q9P1A0 B4DJ81 558 576 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 2 7.2343E-07 106.14 2 0.33698 0.42378 50.135 2 Median 0.33698 0.42378 50.135 2 0 Median NaN NaN NaN 0 0 Median 4929500 3608000 1321500 4929500 3608000 1321500 0 0 0 8317 815 8499 30210;30211 45525;45526 45525 2 LVNTLNTIPSLGQSPGPVVVSNNSSAHGSQR KRPGVTGENSNEVAKLVNTLNTIPSLGQSP PVVVSNNSSAHGSQRTSGPESSMKVTSSIP K L V Q R T 1 1 4 0 0 2 0 3 1 1 3 0 0 0 3 6 2 0 0 4 0 0 31 0 3129.6167 Q7Z3K3;M0R2X2;H7C238 Q7Z3K3 320 350 POGZ Pogo transposable element with ZNF domain yes no 3 2.7036E-06 71.974 2 0.95989 1.3649 26.224 2 Median 0.95989 1.3649 26.224 2 0 Median NaN NaN NaN 0 0 Median 8015300 3690700 4324600 8015300 3690700 4324600 0 0 0 8318 1614 8500 30212;30213 45527;45528;45529 45528 3 LVPDLLAIVQR QNISWKKTIVTRFLKLVPDLLAIVQRKKKE RFLKLVPDLLAIVQRKKKEGEEEQAINRQT K L V Q R K 1 1 0 1 0 1 0 0 0 1 3 0 0 0 1 0 0 0 0 2 0 0 11 0 1235.7602 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8;Q8N7L7 B2RWN5 1644 1654 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 5.9703E-05 96.034 5 2 0.75076 1.0891 10.57 6 Median 0.81576 1.1098 13.137 4 0 Median 0.66351 1.0421 6.3537 2 0 Median 245970000 135460000 110510000 184250000 97245000 87005000 61724000 38218000 23506000 8319 748 8501 30214;30215;30216;30217;30218;30219;30220 45530;45531;45532;45533;45534;45535;45536;45537;45538;45539;45540 45535 10 LVPDLLAIVQRK QNISWKKTIVTRFLKLVPDLLAIVQRKKKE FLKLVPDLLAIVQRKKKEGEEEQAINRQTA K L V R K K 1 1 0 1 0 1 0 0 0 1 3 1 0 0 1 0 0 0 0 2 0 0 12 1 1363.8551 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8;Q8N7L7 B2RWN5 1644 1655 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 0.031015 57.836 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1537400 1537400 0 1537400 1537400 0 0 0 0 8320 748 8502 30221 45541;45542 45542 2 LVPEEETTASENTEITSER SETKGSMQKSKFKYKLVPEEETTASENTEI EETTASENTEITSERQKEGIKLTIRISSRK K L V E R Q 1 1 1 0 0 0 6 0 0 1 1 0 0 0 1 2 4 0 0 1 0 0 19 0 2133.9914 Q96T23;H0YCN2 Q96T23 710 728 RSF1 Remodeling and spacing factor 1 yes no 2 1.2495E-18 152.99 3 2 0.61334 0.85038 27.277 5 Median 0.59962 0.80821 15.481 3 0 Median 0.83329 1.1969 2.7838 2 0 Median 37250000 20441000 16809000 12174000 6645400 5529000 25076000 13796000 11280000 8321 1702 8503 30222;30223;30224;30225;30226 45543;45544;45545;45546;45547;45548;45549;45550 45544 8 LVPEEVTSTVTK EESKKKRFSSESKNKLVPEEVTSTVTKSRR KNKLVPEEVTSTVTKSRRISRRPSDWWVVK K L V T K S 0 0 0 0 0 0 2 0 0 0 1 1 0 0 1 1 3 0 0 3 0 0 12 0 1301.7078 Q03188;H0Y8J2 Q03188 508 519 CENPC Centromere protein C yes no 2 0.0014778 83.862 4 2 0.70739 0.95951 14.688 6 Median 0.67786 0.84179 14.139 4 0 Median 0.71121 1.0725 2.8555 2 0 Median 85294000 51061000 34234000 51302000 30076000 21227000 33992000 20985000 13007000 8322 1439 8504 30227;30228;30229;30230;30231;30232 45551;45552;45553;45554;45555;45556;45557 45554 7 LVPLGVNQDLDK FFDNKRTWQWLPRTKLVPLGVNQDLDKEKM RTKLVPLGVNQDLDKEKMLEGRKSNIRKSV K L V D K E 0 0 1 2 0 1 0 1 0 0 3 1 0 0 1 0 0 0 0 2 0 0 12 0 1309.7242 P55201 P55201 1162 1173 BRPF1 Peregrin yes yes 2 0.022129 43.512 1 1 0.5603 0.8501 NaN 1 Median NaN NaN NaN 0 0 Median 0.5603 0.8501 NaN 1 0 Median 13433000 9943400 3489700 3687600 3687600 0 9745500 6255800 3489700 8323 1379 8505 30233;30234 45558;45559 45559 2 LVPQQLAH KGEAQRCPRCGAHYKLVPQQLAH_______ RCGAHYKLVPQQLAH_______________ K L V A H - 1 0 0 0 0 2 0 0 1 0 2 0 0 0 1 0 0 0 0 1 0 0 8 0 904.51305 P10606;Q6FHJ9 P10606 122 129 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes no 2 0.0012355 113.82 4 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 86124000 0 0 79380000 0 0 6744000 0 0 8324 1251 8506 30235;30236;30237;30238;30239 45560;45561;45562;45563;45564 45563 5 LVPTGLDFGQEGFTR NEWVVDYALKKRNVRLVPTGLDFGQEGFTR LVPTGLDFGQEGFTRFRERRFHPSLRSTRR R L V T R F 0 1 0 1 0 1 1 3 0 0 2 0 0 2 1 0 2 0 0 1 0 0 15 0 1635.8257 P46087 P46087 539 553 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 2.2455E-07 110.64 4 2 0.68739 0.93887 6.4037 6 Median 0.69731 0.95919 4.5672 4 0 Median 0.531 0.87703 2.3439 2 0 Median 899930000 551450000 348490000 462240000 270690000 191550000 437690000 280760000 156940000 8325 1343 8507 30240;30241;30242;30243;30244;30245 45565;45566;45567;45568;45569;45570;45571;45572;45573;45574;45575;45576 45572 12 LVPVGYGIK VRSIQADGLVWGSSKLVPVGYGIKKLQIQC VWGSSKLVPVGYGIKKLQIQCVVEDDKVGT K L V I K K 0 0 0 0 0 0 0 2 0 1 1 1 0 0 1 0 0 0 1 2 0 0 9 0 944.5695 A0A024R3W7;P24534;A4D1M6 A0A024R3W7 177 185 EEF1B2;LOC392793 Elongation factor 1-beta yes no 2 0.029019 46.016 1 0.33099 0.40786 NaN 1 Median 0.33099 0.40786 NaN 1 0 Median NaN NaN NaN 0 0 Median 18094000 12549000 5545300 18094000 12549000 5545300 0 0 0 8326 109 8508 30246 45577 45577 1 LVPVHYDETEAER KKSVKGVSKKYVPPRLVPVHYDETEAEREK PRLVPVHYDETEAEREKKRLERAKRRALSS R L V E R E 1 1 0 1 0 0 3 0 1 0 1 0 0 0 1 0 1 0 1 2 0 0 13 0 1556.7471 Q8NEJ9;H0YJ17 Q8NEJ9 176 188 NGDN Neuroguidin yes no 3 0.049051 18.364 1 0.49465 0.69285 NaN 1 Median NaN NaN NaN 0 0 Median 0.49465 0.69285 NaN 1 0 Median 8431200 5003000 3428200 0 0 0 8431200 5003000 3428200 8327 1654 8509 30247 45578 45578 1 LVPVHYDETEAEREK KKSVKGVSKKYVPPRLVPVHYDETEAEREK LVPVHYDETEAEREKKRLERAKRRALSSSV R L V E K K 1 1 0 1 0 0 4 0 1 0 1 1 0 0 1 0 1 0 1 2 0 0 15 1 1813.8846 Q8NEJ9;H0YJ17 Q8NEJ9 176 190 NGDN Neuroguidin yes no 3 0.00033154 68.033 3 1 0.74985 1.0105 31.539 4 Median 1.0136 1.3191 22.656 3 0 Plateau 0.43968 0.66257 NaN 1 0 Median 32913000 19329000 13584000 25257000 14551000 10706000 7656100 4777700 2878400 8328 1654 8510 30248;30249;30250;30251 45579;45580;45581;45582 45582 4 LVQAFQFTDK VNDLPVGRSVDETLRLVQAFQFTDKHGE__ DETLRLVQAFQFTDKHGE____________ R L V D K H 1 0 0 1 0 2 0 0 0 0 1 1 0 2 0 0 1 0 0 1 0 0 10 0 1195.6237 A0A0A0MSI0;Q06830;B2R4P2;A0A0A0MRQ5 A0A0A0MSI0 159 168 PRDX1 Peroxiredoxin-1 yes no 2 1.8237E-06 122.33 5 2 0.60991 0.76474 87.823 5 Median 0.60936 0.75831 1.0142 3 0 Plateau 2.3811 3.7564 0.19876 2 0 Median 222800000 122870000 99933000 157550000 103610000 53946000 65243000 19256000 45987000 8329 397 8511 30252;30253;30254;30255;30256;30257;30258 45583;45584;45585;45586;45587;45588;45589;45590;45591;45592;45593;45594 45590 12 LVQAPLDADGDNVLQEK LNRESSRSHSVFNIKLVQAPLDADGDNVLQ QAPLDADGDNVLQEKEQITISQLSLVDLAG K L V E K E 2 0 1 3 0 2 1 1 0 0 3 1 0 0 1 0 0 0 0 2 0 0 17 0 1823.9265 H7BYN4;Q02241;H0YKQ5 H7BYN4 309 325 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 6.5107E-23 153 5 2 0.9937 1.2967 18.244 5 Median 0.96747 1.2226 7.9596 3 0 Plateau 1.0763 1.6094 9.068 2 0 Median 52598000 25756000 26842000 33941000 16960000 16981000 18657000 8795800 9861100 8330 1117 8512 30259;30260;30261;30262;30263;30264;30265 45595;45596;45597;45598;45599;45600;45601;45602;45603;45604;45605;45606;45607;45608 45599 14 LVQDYGLESEVAQHLAATYGDK FLQGGKDWSPTLYIRLVQDYGLESEVAQHL ESEVAQHLAATYGDKAFEVAKMASVTGKRW R L V D K A 3 0 0 2 0 2 2 2 1 0 3 1 0 0 0 1 1 0 2 2 0 0 22 0 2406.1703 B7Z601;Q53T76;A8K1Z2;A0A140VJK2;P43304 B7Z601 256 277 GPD2 Glycerol-3-phosphate dehydrogenase;Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 3 0.00014216 66.264 1 0.44891 0.56572 NaN 1 Median 0.44891 0.56572 NaN 1 0 Median NaN NaN NaN 0 0 Median 4531200 3240200 1291000 4531200 3240200 1291000 0 0 0 8331 497 8513 30266 45609 45609 1 LVQEALEAVPR FTRAILMALRLNESKLVQEALEAVPRGEIE NESKLVQEALEAVPRGEIEVVTSSLPELYV K L V P R G 2 1 0 0 0 1 2 0 0 0 2 0 0 0 1 0 0 0 0 2 0 0 11 0 1223.6874 Q15269;A0A0B4J2E5 Q15269 774 784 PWP2 Periodic tryptophan protein 2 homolog yes no 2 3.4401E-12 145.25 4 2 0.81551 1.1166 4.1516 6 Median 0.82706 1.1166 4.0378 4 0 Median 0.71578 1.1296 6.0839 2 0 Median 181050000 104320000 76725000 114400000 64959000 49438000 66652000 39364000 27288000 8332 1508 8514 30267;30268;30269;30270;30271;30272 45610;45611;45612;45613;45614;45615;45616;45617;45618;45619;45620;45621 45614 12 LVQNGTEPSSLPFLDPNARPLVPEVSIK ELTKKLREQGSLLGKLVQNGTEPSSLPFLD LDPNARPLVPEVSIKTPRVFNTGGAPRILA K L V I K T 1 1 2 1 0 1 2 1 0 1 4 1 0 1 5 3 1 0 0 3 0 0 28 1 3016.6233 Q53SY7;F8VPD4;P27708;G1UI39 Q53SY7 64 91 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 3 0.0052945 56.95 2 0.19344 0.25855 NaN 1 Median 0.19344 0.25855 NaN 1 0 Median NaN NaN NaN 0 0 Median 2693200 2256300 436880 2693200 2256300 436880 0 0 0 8333 1060 8515 30273;30274 45622;45623 45623 2 LVQSPNSYFMDVK HPSPEEEKRKHKKKRLVQSPNSYFMDVKCP KRLVQSPNSYFMDVKCPGCYKITTVFSHAQ R L V V K C 0 0 1 1 0 1 0 0 0 0 1 1 1 1 1 2 0 0 1 2 0 0 13 0 1526.7439 H0YMV8;Q71UM5;C9JLI6;A4D1G5;P42677;Q5T4L4 P42677 24 36 RPS27L;LOC392748;RPS27 40S ribosomal protein S27;40S ribosomal protein S27-like no no 2 1.395E-12 129 8 3 0.75375 0.97995 24.278 8 Median 0.80189 0.99143 9.9582 5 0 Median 0.40557 0.63308 30.007 3 0 Median 470140000 318160000 151980000 77749000 43821000 33927000 392390000 274340000 118050000 8334 1337;1103 8516;8517 30275;30276;30277;30278;30279;30280;30281;30282;30283;30284;30285 45624;45625;45626;45627;45628;45629;45630;45631;45632;45633;45634;45635;45636;45637;45638 45636 392 15 LVQYLR EKMREKGIKLLQAQKLVQYLRECEDVMDWI GIKLLQAQKLVQYLRECEDVMDWINDKEAI K L V L R E 0 1 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 1 1 0 0 6 0 790.47012 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 151 156 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.032349 116.12 1 0.80331 1.0937 NaN 1 Median 0.80331 1.0937 NaN 1 0 Median NaN NaN NaN 0 0 Median 5443200 2939000 2504200 5443200 2939000 2504200 0 0 0 8335 1476 8518 30286 45639 45639 1 LVREIAQDFK QKSTELLIRKLPFQRLVREIAQDFKTDLRF LPFQRLVREIAQDFKTDLRFQSAAIGALQE R L V F K T 1 1 0 1 0 1 1 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 10 1 1217.6768 B2R4P9;P84243;B4E380;K7EK07;B2R6Y1;A8K4Y7;K7EMV3;B4DEB1;K7ES00;Q6TXQ4;P68431;Q71DI3 B2R4P9 71 80 H3F3A;H3F3B;HIST1H3A;HIST2H3A Histone H3;Histone H3.3;Histone H3.1;Histone H3.2 no no 3 0.0018189 53.211 3 0.74086 0.98429 6.7322 3 Median 0.74086 0.98429 6.7322 3 0 Median NaN NaN NaN 0 0 Median 83312000 46592000 36720000 83312000 46592000 36720000 0 0 0 8336 685;1424;1605 8519 30287;30288;30289 45640;45641;45642 45641 3 LVSDGNINSDR ANEEKINAVVETGRRLVSDGNINSDRIQEK TGRRLVSDGNINSDRIQEKVDSIDDRHRKN R L V D R I 0 1 2 2 0 0 0 1 0 1 1 0 0 0 0 2 0 0 0 1 0 0 11 0 1188.5735 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24 B2ZZ89 1235 1245 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.00023901 82.749 3 0.79054 1.1 19.391 3 Median 0.79054 1.1 19.391 3 0 Median NaN NaN NaN 0 0 Median 20318000 10764000 9554700 20318000 10764000 9554700 0 0 0 8337 346 8520 30290;30291;30292 45643;45644;45645;45646 45646 4 LVSESSDVLPK SRAVVVKKIETRDGKLVSESSDVLPK____ RDGKLVSESSDVLPK_______________ K L V P K - 0 0 0 1 0 0 1 0 0 0 2 1 0 0 1 3 0 0 0 2 0 0 11 0 1172.6289 CON__P05787;P05787;Q969I0;Q7L4M3 CON__P05787 473 483 KRT8 Keratin, type II cytoskeletal 8 yes no 2 5.8643E-08 152.06 5 2 0.21203 0.27175 112.67 6 Median 0.20377 0.26438 4.6195 4 0 Median 1.467 2.3183 2.4336 2 0 Median 344930000 255990000 88947000 280100000 228360000 51738000 64833000 27625000 37209000 + 8338 955 8521 30293;30294;30295;30296;30297;30298;30299 45647;45648;45649;45650;45651;45652;45653;45654;45655;45656;45657 45647 11 LVSIDSK NVSVALEFLDRESIKLVSIDSKAIVDGNLK FLDRESIKLVSIDSKAIVDGNLKLILGLIW K L V S K A 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 2 0 0 0 1 0 0 7 0 760.43307 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98;O75369;A0A024R321;Q14315 P21333 121 127 FLNA;FLNB;FLNC Filamin-A;Filamin-B;Filamin-C no no 2 0.018709 108.24 1 0.74462 0.93967 NaN 1 Median 0.74462 0.93967 NaN 1 0 Median NaN NaN NaN 0 0 Median 10372000 5873300 4498800 10372000 5873300 4498800 0 0 0 8339 1287;1199;1486 8522 30300 45658 45658 1 LVSIGAEEIVDGNAK NVNKALDFIASKGVKLVSIGAEEIVDGNAK LVSIGAEEIVDGNAKMTLGMIWTIILRFAI K L V A K M 2 0 1 1 0 0 2 2 0 2 1 1 0 0 0 1 0 0 0 2 0 0 15 0 1513.7988 A0A0S2Z3G9;O43707;B4E337;B4DSX0 A0A0S2Z3G9 126 140 ACTN4 Alpha-actinin-4 yes no 2 3.5014E-18 123.8 3 0.7864 0.9981 6.8952 2 Median 0.7864 0.9981 6.8952 2 0 Median NaN NaN NaN 0 0 Median 30551000 18638000 11913000 30551000 18638000 11913000 0 0 0 8340 451 8523 30301;30302;30303 45659;45660;45661;45662 45661 4 LVSIGAEEIVDGNVK NVNKALDFIASKGVKLVSIGAEEIVDGNVK LVSIGAEEIVDGNVKMTLGMIWTIILRFAI K L V V K M 1 0 1 1 0 0 2 2 0 2 1 1 0 0 0 1 0 0 0 3 0 0 15 0 1541.8301 H9KV75;B7Z565;A0A024R694;P12814;Q86TX4;G3V2W4;B4DRP5;G3V2N5;B7Z2N5;P35609;G3V2E8;G3V5M4;G3V2X9;B7Z4V1 H9KV75 42 56 ACTN1;ACTN2 Alpha-actinin-1;Alpha-actinin-2 yes no 2 7.0499E-09 141.08 2 0.97958 1.2453 NaN 1 Median 0.97958 1.2453 NaN 1 0 Median NaN NaN NaN 0 0 Median 7873300 4935900 2937400 7873300 4935900 2937400 0 0 0 8341 157 8524 30304;30305 45663;45664 45663 1 LVSIVDSLHLEMEEALTEQVAR PERAVFRLRKWIIFRLVSIVDSLHLEMEEA LHLEMEEALTEQVARFCLFHSFFVTKKPTS R L V A R F 2 1 0 1 0 1 4 0 1 1 4 0 1 0 0 2 1 0 0 3 0 0 22 0 2481.2785 Q9BQG0;I3L1L3;B4DZZ1;I3L2H8 Q9BQG0 456 477 MYBBP1A Myb-binding protein 1A yes no 3 6.629E-15 126.25 1 0.84031 1.1578 NaN 1 Median 0.84031 1.1578 NaN 1 0 Median NaN NaN NaN 0 0 Median 6049800 3010100 3039600 6049800 3010100 3039600 0 0 0 8342 1708 8525 30306 45665;45666 45666 2 LVSLGTCFGK SEKIMKLAANISGDKLVSLGTCFGKFTKTH ISGDKLVSLGTCFGKFTKTHKFRLHVTALD K L V G K F 0 0 0 0 1 0 0 2 0 0 2 1 0 1 0 1 1 0 0 1 0 0 10 0 1080.5638 Q9Y221;B3KM49;J3QLW7 Q9Y221 63 72 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog yes no 2 1.0033E-06 144.12 4 2 0.65402 0.81646 22.007 6 Median 0.68434 0.86057 6.7108 4 0 Median 0.3783 0.57157 5.5235 2 0 Median 129010000 75268000 53739000 104390000 57634000 46752000 24621000 17634000 6986900 8343 1800 8526 30307;30308;30309;30310;30311;30312 45667;45668;45669;45670;45671;45672;45673;45674;45675;45676;45677 45670 11 LVSNHSLHETSSVFVDSLTK HIGGSPFKAKVTGPRLVSNHSLHETSSVFV SLHETSSVFVDSLTKATCAPQHGAPGPGPA R L V T K A 0 0 1 1 0 0 1 0 2 0 3 1 0 1 0 5 2 0 0 3 0 0 20 0 2199.1172 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;Q86TQ3 P21333 2521 2540 FLNA;FLJ00119 Filamin-A yes no 3 4.5579E-16 128.44 3 1.0387 1.2989 14.879 3 Median 1.0387 1.2989 14.879 3 0 Median NaN NaN NaN 0 0 Median 72081000 35570000 36512000 72081000 35570000 36512000 0 0 0 8344 1287 8527 30313;30314;30315 45678;45679;45680;45681;45682;45683;45684 45681 7 LVSPGSANETSSILVESVTR HIVGSPFKAKVTGQRLVSPGSANETSSILV SANETSSILVESVTRSSTETCYSAIPKASS R L V T R S 1 1 1 0 0 0 2 1 0 1 2 0 0 0 1 5 2 0 0 3 0 0 20 0 2045.0641 O75369;A0A024R321;Q68CT4;E7EN95;A0A0A0MT44 O75369 2476 2495 FLNB;DKFZp686A1668 Filamin-B yes no 2 2.2031E-31 130.24 4 0.6479 0.82239 4.7972 4 Linear 0.6479 0.82239 4.7972 4 0 Linear NaN NaN NaN 0 0 Median 24170000 14613000 9556900 24170000 14613000 9556900 0 0 0 8345 1199 8528 30316;30317;30318;30319 45685;45686;45687;45688;45689;45690;45691;45692;45693 45691 9 LVSQDNFGFDLPAVEAATK RKAAMRETWLSENQRLVSQDNFGFDLPAVE DNFGFDLPAVEAATKKHEAIETDIAAYEER R L V T K K 3 0 1 2 0 1 1 1 0 0 2 1 0 2 1 1 1 0 0 2 0 0 19 0 2021.0106 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;F8W6C1 B2ZZ89 444 462 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 2.3314E-19 148.18 4 0.93775 1.1802 9.2974 4 Median 0.93775 1.1802 9.2974 4 0 Median NaN NaN NaN 0 0 Median 105740000 57216000 48525000 105740000 57216000 48525000 0 0 0 8346 346 8529 30320;30321;30322;30323 45694;45695;45696;45697;45698;45699;45700;45701;45702;45703 45701 10 LVSVLQNK PLPKKSIDTGMGLERLVSVLQNKMSNYDTD TGMGLERLVSVLQNKMSNYDTDLFVPYFEA R L V N K M 0 0 1 0 0 1 0 0 0 0 2 1 0 0 0 1 0 0 0 2 0 0 8 0 899.54402 P49588 P49588 247 254 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 0.0082125 78.616 1 0.62072 0.78833 NaN 1 Median 0.62072 0.78833 NaN 1 0 Median NaN NaN NaN 0 0 Median 12675000 7451200 5224200 12675000 7451200 5224200 0 0 0 8347 1352 8530 30324 45704 45704 1 LVTCTGYHQVR PIWDQDIQFLPGSQKLVTCTGYHQVRVYDP GSQKLVTCTGYHQVRVYDPASPQRRPVLET K L V V R V 0 1 0 0 1 1 0 1 1 0 1 0 0 0 0 0 2 0 1 2 0 0 11 0 1332.6609 Q6RFH5;E9PS41 Q6RFH5 198 208 WDR74 WD repeat-containing protein 74 yes no 2;3 5.9868E-08 122.33 6 2 0.65705 0.88695 19.038 8 Median 0.70019 0.95172 11.132 6 0 Median 0.50529 0.67777 0.077246 2 0 Median 129510000 73499000 56015000 118760000 66104000 52660000 10750000 7394700 3354900 8348 1598 8531 30325;30326;30327;30328;30329;30330;30331;30332 45705;45706;45707;45708;45709;45710;45711;45712;45713;45714;45715;45716 45706 12 LVTIKR ______________________________ ______________________________ R L V K R S 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 6 1 728.49086 P46013;Q70L72;Q70L73 P46013 7 12 MKI67 Antigen KI-67 no no 2 0.04887 77.944 1 0.59749 0.93372 NaN 1 Median NaN NaN NaN 0 0 Median 0.59749 0.93372 NaN 1 0 Median 6077200 3769700 2307500 0 0 0 6077200 3769700 2307500 8349 1342;1604 8532 30333 45717 45717 1 LVTLPVSFAQLK GRLVNLQHLDLLNNKLVTLPVSFAQLKNLK NNKLVTLPVSFAQLKNLKWLDLKDNPLDPV K L V L K N 1 0 0 0 0 1 0 0 0 0 3 1 0 1 1 1 1 0 0 2 0 0 12 0 1314.7911 Q96AG4 Q96AG4 97 108 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2 5.95E-08 122.94 4 2 0.55861 0.73412 41.015 6 Median 0.56268 0.73931 4.775 4 0 Linear 0.97936 1.5513 9.8489 2 0 Median 618570000 367720000 250860000 434710000 279620000 155090000 183870000 88102000 95764000 8350 1681 8533 30334;30335;30336;30337;30338;30339 45718;45719;45720;45721;45722;45723;45724;45725;45726;45727;45728 45723 11 LVTTGVLK VGENADSQIKLSIKRLVTTGVLKQTKGVGA IKLSIKRLVTTGVLKQTKGVGASGSFRLAK R L V L K Q 0 0 0 0 0 0 0 1 0 0 2 1 0 0 0 0 2 0 0 2 0 0 8 0 829.5273 P07305 P07305 75 82 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes yes 2 0.019156 79.469 2 1 0.58422 0.73678 32.003 3 Median 0.75555 0.95092 36.082 2 0 Median 0.43851 0.68049 NaN 1 0 Median 123400000 63037000 60363000 92015000 42205000 49810000 31386000 20832000 10554000 8351 1240 8534 30340;30341;30342 45729;45730;45731 45730 3 LVVALSR EAFRLAQQPHQNQAKLVVALSRTYRTMDDK QPHQNQAKLVVALSRTYRTMDDKTVFHEEF K L V S R T 1 1 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 2 0 0 7 0 756.48577 Q9BPX3;Q6NUR1;D6RA93 Q9BPX3 27 33 NCAPG Condensin complex subunit 3 yes no 2 0.003913 128.38 4 1 0.68162 0.90762 6.6295 5 Median 0.68341 0.91019 1.5109 4 0 Median 0.52176 0.79164 NaN 1 0 Median 95543000 56725000 38817000 76750000 44258000 32491000 18793000 12467000 6325900 8352 1706 8535 30343;30344;30345;30346;30347 45732;45733;45734;45735;45736;45737;45738;45739;45740 45733 9 LVVATEK KVKFASLEFSPGSKKLVVATEKNVIAALNS EFSPGSKKLVVATEKNVIAALNSRTGEILW K L V E K N 1 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 7 0 758.4538 Q8N766;Q5TG59 Q8N766 54 60 EMC1 ER membrane protein complex subunit 1 yes no 2 0.032699 60.788 1 0.92994 1.16 NaN 1 Median 0.92994 1.16 NaN 1 0 Median NaN NaN NaN 0 0 Median 43345000 23688000 19657000 43345000 23688000 19657000 0 0 0 8353 1642 8536 30348 45741 45741 1 LVVDSHVQYR GNAFHLCREVLRLTKLVVDSHVQYRLGNVD LRLTKLVVDSHVQYRLGNVDAFQLADGLQY K L V Y R L 0 1 0 1 0 1 0 0 1 0 1 0 0 0 0 1 0 0 1 3 0 0 10 0 1214.6408 Q6P2Q9;I3L0J9 Q6P2Q9 556 565 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2;3 0.00099817 101.65 4 0.59926 0.82403 7.0087 3 Median 0.59926 0.82403 7.0087 3 0 Median NaN NaN NaN 0 0 Median 50131000 29273000 20857000 50131000 29273000 20857000 0 0 0 8354 1592 8537 30349;30350;30351;30352 45742;45743;45744;45745;45746;45747;45748 45743 7 LVVGGLLSPEEDQSLLLSQFR SKWEGNYLFPRELFKLVVGGLLSPEEDQSL LSPEEDQSLLLSQFREYLDYDDTRYHTMQA K L V F R E 0 1 0 1 0 2 2 2 0 0 6 0 0 1 1 3 0 0 0 2 0 0 21 0 2299.2424 Q9BVI4;F5H303 Q9BVI4 152 172 NOC4L Nucleolar complex protein 4 homolog yes no 2 1.0064E-14 96.464 3 0.74513 1.0029 34.065 2 Median 0.74513 1.0029 34.065 2 0 Median NaN NaN NaN 0 0 Median 43409000 19526000 23883000 43409000 19526000 23883000 0 0 0 8355 1718 8538 30353;30354;30355 45749;45750;45751 45751 3 LVVLAIANTMDLPER IMYNLFDWPTHKEARLVVLAIANTMDLPER LVVLAIANTMDLPERIMMNRVSSRLGLTRM R L V E R I 2 1 1 1 0 0 1 0 0 1 3 0 1 0 1 0 1 0 0 2 0 0 15 0 1653.9124 B7Z8H0;Q96F82;A8K794;Q13415 B7Z8H0 642 656 ORC1L;ORC1 Origin recognition complex subunit 1 yes no 2 0.00027548 59.57 2 0.31824 0.46067 5.4823 2 Median NaN NaN NaN 0 0 Median 0.31824 0.46067 5.4823 2 0 Median 15868000 11467000 4400500 0 0 0 15868000 11467000 4400500 8356 630 8539 30356;30357 45752;45753 45753 210 1 LVVLGIRPIR KKAAKAGLSQSLFERLVVLGIRPIRLQVQY SLFERLVVLGIRPIRLQVQYRMHPALSAFP R L V I R L 0 2 0 0 0 0 0 1 0 2 2 0 0 0 1 0 0 0 0 2 0 0 10 1 1134.7601 A0A024R7L5;A0A024R7L8;Q92900 A0A024R7L5 688 697 UPF1 Regulator of nonsense transcripts 1 yes no 3 0.0012637 66.27 1 0.35535 0.47019 NaN 1 Median 0.35535 0.47019 NaN 1 0 Median NaN NaN NaN 0 0 Median 13226000 9028200 4198200 13226000 9028200 4198200 0 0 0 8357 180 8540 30358 45754 45754 1 LVVLGSGGVGK ______________________________ REYKLVVLGSGGVGKSALTVQFVQGIFVEK K L V G K S 0 0 0 0 0 0 0 4 0 0 2 1 0 0 0 1 0 0 0 3 0 0 11 0 984.59678 Q5U0C3;A8KAH9;A0A024RB87;P62834;P61224;F5H4H0;F5GYH7;F5H077;F5GWU8;F5H491;F5H0B7;F5H500;F5H6R7;F5H004;A0A075B6Q0;F5GYB5;F5GX62;Q9BXV4;E7ESV4;F5H7Y6;F8WBC0;B7ZAY2 Q5U0C3 6 16 RAP1A;RAP1B Ras-related protein Rap-1A;Ras-related protein Rap-1b yes no 2 0.00082443 91.584 3 2 0.67576 0.87973 115.49 5 Median 0.6485 0.83907 4.4344 3 0 Median 4.6356 6.9145 6.302 2 0 Median 51417000 23300000 28116000 34358000 19743000 14615000 17059000 3557600 13501000 8358 265 8541 30359;30360;30361;30362;30363 45755;45756;45757;45758;45759;45760;45761;45762;45763 45763 9 LVVPASQCGSLIGK MTNSTAASRPPVTLRLVVPASQCGSLIGKG RLVVPASQCGSLIGKGGCKIKEIRESTGAQ R L V G K G 1 0 0 0 1 1 0 2 0 1 2 1 0 0 1 2 0 0 0 2 0 0 14 0 1427.7806 Q15366;B4DLC0;F8W0G4;F8VXH9;F8W1G6;J3QT27;Q5MJP6;E9PFP8;P57721;H3BND9;H3BRU6;F8VZX2;B4DRD7 Q15366 102 115 PCBP2;PCBP3 Poly(rC)-binding protein 2;Poly(rC)-binding protein 3 no no 2 0.0018911 88.338 1 0.26181 0.33375 NaN 1 Median 0.26181 0.33375 NaN 1 0 Median NaN NaN NaN 0 0 Median 27512000 22663000 4848900 27512000 22663000 4848900 0 0 0 8359 1510;1064 8542 30364 45764 45764 1 LVVPATQCGSLIGK MTNSTAASRPPVTLRLVVPATQCGSLIGKG RLVVPATQCGSLIGKGGCKIKEIRESTGAQ R L V G K G 1 0 0 0 1 1 0 2 0 1 2 1 0 0 1 1 1 0 0 2 0 0 14 0 1441.7963 Q53SS8;Q15365 Q53SS8 102 115 PCBP1 Poly(rC)-binding protein 1 yes no 2 5.1191E-05 101.39 3 1 1.1986 1.6486 150.71 2 Median 0.4562 0.56791 NaN 1 0 Median 3.1494 4.7855 NaN 1 0 Median 86455000 60425000 26029000 73901000 57324000 16577000 12554000 3101300 9452400 8360 1509 8543 30365;30366;30367;30368 45765;45766;45767;45768;45769;45770 45769 6 LVYAPLSGVGGVLYDK LPEQQKKRCLNEKEKLVYAPLSGVGGVLYD VYAPLSGVGGVLYDKDAVYVDLGGSHVFQD K L V D K D 1 0 0 1 0 0 0 3 0 0 3 1 0 0 1 1 0 0 2 3 0 0 16 0 1649.9029 Q14692 Q14692 334 349 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 5.0683E-25 131.69 4 2 0.92143 1.1646 9.6851 6 Median 1.0112 1.2617 10.896 4 0 Median 0.70961 1.1221 0.28553 2 0 Median 195280000 101630000 93654000 125930000 61933000 63998000 69349000 39693000 29656000 8361 1495 8544 30369;30370;30371;30372;30373;30374 45771;45772;45773;45774;45775;45776;45777;45778;45779;45780;45781;45782 45775 12 LWALPQCQLLGVFSGHR NDKLLATGSQDRTAKLWALPQCQLLGVFSG ALPQCQLLGVFSGHRRGLWCVQFSPMDQVL K L W H R R 1 1 0 0 1 2 0 2 1 0 4 0 0 1 1 1 0 1 0 1 0 0 17 0 1981.0356 Q12788;J3KNP2;A0JLS5 Q12788 505 521 TBL3 Transducin beta-like protein 3 no no 3 1.5988E-07 73.464 1 0.37382 0.51529 NaN 1 Median NaN NaN NaN 0 0 Median 0.37382 0.51529 NaN 1 0 Median 5916500 4747800 1168700 0 0 0 5916500 4747800 1168700 8362 1456 8545 30375 45783 45783 1 LWALQDFSCLK MDQVLATASADGTIKLWALQDFSCLKTFEG GTIKLWALQDFSCLKTFEGHDASVLKVAFV K L W L K T 1 0 0 1 1 1 0 0 0 0 3 1 0 1 0 1 0 1 0 0 0 0 11 0 1379.6908 Q12788;J3KNP2;A0JLS5 Q12788 547 557 TBL3 Transducin beta-like protein 3 yes no 2 0.039899 43.651 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4244800 4244800 0 0 0 0 4244800 4244800 0 8363 1456 8546 30376 45784 45784 1 LWDLTTGTTTR DGQFALSGSWDGTLRLWDLTTGTTTRRFVG GTLRLWDLTTGTTTRRFVGHTKDVLSVAFS R L W T R R 0 1 0 1 0 0 0 1 0 0 2 0 0 0 0 0 5 1 0 0 0 0 11 0 1263.6459 E9KL35;P63244;D6R9Z1;D6R9L0;D6RFX4;J3KPE3;H0Y8W2;H0YAF8;B4DVD2;D6RHH4;D6RFZ9;D6RAU2;E9PD14;B4E0C3 E9KL35 89 99 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 0.030568 45.598 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7932400 0 7932400 0 0 0 7932400 0 7932400 8364 1019 8547 30377 45785 45785 1 LWDYIDGILIK NHLQLYSCSLDGTIKLWDYIDGILIKTFIV GTIKLWDYIDGILIKTFIVGCKLHALFTLA K L W I K T 0 0 0 2 0 0 0 1 0 3 2 1 0 0 0 0 0 1 1 0 0 0 11 0 1347.7438 A8K330;Q8IWA0 A8K330 84 94 WDR75 WD repeat-containing protein 75 yes no 2 0.0013113 111.06 3 0.7681 0.95584 18.494 3 Median 0.7681 0.95584 18.494 3 0 Median NaN NaN NaN 0 0 Median 5064000 2890400 2173600 5064000 2890400 2173600 0 0 0 8365 588 8548 30378;30379;30380 45786;45787;45788 45786 3 LWEVATAR GGQWLVSGSDDGSLRLWEVATARCVRTVPV SDDGSLRLWEVATARCVRTVPVGGVVKSVA R L W A R C 2 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 1 0 1 0 0 8 0 944.50797 B2RDN4;Q14137;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 B2RDN4 439 446 BOP1 Ribosome biogenesis protein BOP1 yes no 2 0.04483 43.769 1 0.57566 0.80418 NaN 1 Median NaN NaN NaN 0 0 Median 0.57566 0.80418 NaN 1 0 Median 8674100 5250000 3424000 0 0 0 8674100 5250000 3424000 8366 738 8549 30381 45789 45789 1 LWQCGEGFR NTDLVATGSHSSCVRLWQCGEGFRQLDLLC HSSCVRLWQCGEGFRQLDLLCDIPLVGFIN R L W F R Q 0 1 0 0 1 1 1 2 0 0 1 0 0 1 0 0 0 1 0 0 0 0 9 0 1151.5182 O43818 O43818 402 410 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 0.020312 55.676 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2412700 0 2412700 0 0 0 2412700 0 2412700 8367 1188 8550 30382 45790 45790 1 LWTLVSEQTR LKRNQSFCPTVNLDKLWTLVSEQTRVNAAK VNLDKLWTLVSEQTRVNAAKNKTGAAPIID K L W T R V 0 1 0 0 0 1 1 0 0 0 2 0 0 0 0 1 2 1 0 1 0 0 10 0 1231.6561 Q9BQQ5;E9PLL6;Q6NZ52;P46776;E9PJD9 Q9BQQ5 78 87 L27a;RPL27A 60S ribosomal protein L27a yes no 2 0.0023385 71.349 2 0.24342 0.40022 0.036527 2 Median NaN NaN NaN 0 0 Median 0.24342 0.40022 0.036527 2 0 Median 304030000 244810000 59221000 0 0 0 304030000 244810000 59221000 8368 1040 8551 30383;30384 45791;45792;45793;45794;45795 45791 5 LWVLETK SPDGKMLLSAGRTIKLWVLETKEVYRHFTG LSAGRTIKLWVLETKEVYRHFTGHATPVSS K L W T K E 0 0 0 0 0 0 1 0 0 0 2 1 0 0 0 0 1 1 0 1 0 0 7 0 887.51165 Q15061;C9IZK7;C9JEE7 Q15061 192 198 WDR43 WD repeat-containing protein 43 yes no 2 0.041795 54.205 1 0.25323 0.37096 NaN 1 Median NaN NaN NaN 0 0 Median 0.25323 0.37096 NaN 1 0 Median 5626600 4243100 1383500 0 0 0 5626600 4243100 1383500 8369 1505 8552 30385 45796 45796 1 LYALDVLLTR IRIPGKESLITDSGKLYALDVLLTRLKSQG TDSGKLYALDVLLTRLKSQGHRVLIYSQMT K L Y T R L 1 1 0 1 0 0 0 0 0 0 4 0 0 0 0 0 1 0 1 1 0 0 10 0 1175.6914 A0A024R9R7;Q9ULG1;A8K2V6 A0A024R9R7 1103 1112 INOC1;INO80 DNA helicase INO80 yes no 2 0.041452 72.879 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 277140 0 277140 277140 0 277140 0 0 0 8370 230 8553 30386 45797 45797 1 LYALGLVPTR RDQFRVRASAALLDKLYALGLVPTRGSLEL ALLDKLYALGLVPTRGSLELCDFVTASSFC K L Y T R G 1 1 0 0 0 0 0 1 0 0 3 0 0 0 1 0 1 0 1 1 0 0 10 0 1101.6546 Q9NV31 Q9NV31 83 92 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 2 0.00039406 112.84 4 2 0.88733 1.2013 17.871 6 Median 0.91841 1.2354 4.5013 4 0 Median 0.63479 0.90049 11.975 2 0 Median 160040000 81311000 78729000 139810000 68878000 70928000 20233000 12432000 7800200 8371 1762 8554 30387;30388;30389;30390;30391;30392 45798;45799;45800;45801;45802;45803;45804;45805;45806;45807 45801 10 LYCQELK KTENKAKSGKQNSKKLYCQELKKVIEASDV SGKQNSKKLYCQELKKVIEASDVVLEVLDA K L Y L K K 0 0 0 0 1 1 1 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 7 0 952.4688 A0A024R2Z6;Q9BVP2;C9JZT7;B4DMU5 A0A024R2Z6 117 123 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.0086595 119.56 4 0.61487 0.78063 7.4587 3 Median 0.61487 0.78063 7.4587 3 0 Median NaN NaN NaN 0 0 Median 63016000 45356000 17661000 63016000 45356000 17661000 0 0 0 8372 95 8555 30393;30394;30395;30396 45808;45809;45810;45811;45812;45813 45808 6 LYDIDVAK DVKANKHQIKQAVKKLYDIDVAKVNTLIRP IKQAVKKLYDIDVAKVNTLIRPDGEKKAYV K L Y A K V 1 0 0 2 0 0 0 0 0 1 1 1 0 0 0 0 0 0 1 1 0 0 8 0 935.4964 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7 H7BY10 118 125 RPL23A 60S ribosomal protein L23a yes no 2 0.010123 111.65 5 2 0.47611 1.2709 30.583 3 Plateau 0.96233 1.2719 NaN 1 0 Median 0.47564 0.74932 2.0644 2 0 Median 1871000000 1048100000 822930000 1202600000 598590000 603990000 668460000 449520000 218940000 8373 658 8556 30397;30398;30399;30400;30401;30402;30403 45814;45815;45816;45817;45818;45819;45820;45821;45822;45823;45824;45825;45826 45814 13 LYDLNHNEIGELIR EVVKKIEKKNFPFERLYDLNHNEIGELIRM RLYDLNHNEIGELIRMPKMGKTIHKYVHLF R L Y I R M 0 1 2 1 0 0 2 1 1 2 3 0 0 0 0 0 0 0 1 0 0 0 14 0 1697.8737 O75643;A4FU77 O75643 1153 1166 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 8.8265E-06 78.486 4 0.56408 0.75308 17.63 4 Median 0.56408 0.75308 17.63 4 0 Median NaN NaN NaN 0 0 Median 83657000 54508000 29149000 83657000 54508000 29149000 0 0 0 8374 1206 8557 30404;30405;30406;30407 45827;45828;45829;45830;45831;45832 45832 6 LYDNLLEQNLIR AELRDDPIISTHLAKLYDNLLEQNLIRVIE LAKLYDNLLEQNLIRVIEPFSRVQIEHISS K L Y I R V 0 1 2 1 0 1 1 0 0 1 4 0 0 0 0 0 0 0 1 0 0 0 12 0 1502.8093 O00231 O00231 326 337 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes yes 2 0.0089172 54.066 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4084700 4084700 0 4084700 4084700 0 0 0 0 8375 1165 8558 30408 45833 45833 1 LYDVVAVFPK PSHCNVLRATSSRARLYDVVAVFPKTEKLF SSRARLYDVVAVFPKTEKLFHIACTHLDVD R L Y P K T 1 0 0 1 0 0 0 0 0 0 1 1 0 1 1 0 0 0 1 3 0 0 10 0 1149.6434 P78346;Q5VU10;Q5VU11;B4DJR3 P78346 99 108 RPP30 Ribonuclease P protein subunit p30 yes no 2 0.00019716 101.64 3 0.73539 0.90944 19.399 3 Median 0.73539 0.90944 19.399 3 0 Median NaN NaN NaN 0 0 Median 9877700 5463100 4414700 9877700 5463100 4414700 0 0 0 8376 1425 8559 30409;30410;30411 45834;45835;45836;45837 45835 4 LYEQILAENEK YSSRLEKDDSTDFKKLYEQILAENEKLKAQ DFKKLYEQILAENEKLKAQLHDTNMELTDL K L Y E K L 1 0 1 0 0 1 3 0 0 1 2 1 0 0 0 0 0 0 1 0 0 0 11 0 1348.6874 B2RAH5;O14974;A0A0U1RQZ1;H0YIS3 B2RAH5 935 945 PPP1R12A Protein phosphatase 1 regulatory subunit;Protein phosphatase 1 regulatory subunit 12A no no 2 0.0016732 106.29 3 1.5277 2.012 NaN 1 Median 1.5277 2.012 NaN 1 0 Median NaN NaN NaN 0 0 Median 2934700 1243400 1691200 2934700 1243400 1691200 0 0 0 8377 723 8560 30412;30413;30414 45838;45839;45840 45840 3 LYESLLVGSLPDMNK LWDTANTVKEKFGRKLYESLLVGSLPDMNK LYESLLVGSLPDMNKMLDKEDFTMMKRAIF K L Y N K M 0 0 1 1 0 0 1 1 0 0 4 1 1 0 1 2 0 0 1 1 0 0 15 0 1677.8648 P13807;A8K6K7;B7Z806;B7Z6I6 P13807 404 418 GYS1 Glycogen [starch] synthase, muscle yes no 2 0.00011093 77.062 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15746000 15157000 588920 588920 0 588920 15157000 15157000 0 8378 1265 8561;8562 30415;30416 45841;45842 45842 529 2 LYETSYR QWVQLVDLTEIYGERLYETSYRLSKNEAPE LTEIYGERLYETSYRLSKNEAPEGNLGDFA R L Y Y R L 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 1 1 0 2 0 0 0 7 0 930.4447 Q9UKN8;Q05CN7 Q9UKN8 216 222 GTF3C4 General transcription factor 3C polypeptide 4 yes no 2 0.035066 58.167 1 0.82484 1.1287 NaN 1 Median 0.82484 1.1287 NaN 1 0 Median NaN NaN NaN 0 0 Median 9701700 5887800 3813900 9701700 5887800 3813900 0 0 0 8379 1789 8563 30417 45843 45843 1 LYGDADYLEER KRRTLFQTKNSVMRKLYGDADYLEERHRHR VMRKLYGDADYLEERHRHRFEVNPVWKKCL K L Y E R H 1 1 0 2 0 0 2 1 0 0 2 0 0 0 0 0 0 0 2 0 0 0 11 0 1342.6041 P17812;B4E1E0;B4DMB5 P17812 467 477 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.00072039 77.379 1 0.37834 0.50603 NaN 1 Median 0.37834 0.50603 NaN 1 0 Median NaN NaN NaN 0 0 Median 7365900 5650800 1715100 7365900 5650800 1715100 0 0 0 8380 1278 8564 30418 45844;45845 45844 2 LYGEFADPFK DAVSQLDSELMDITKLYGEFADPFKLAECK MDITKLYGEFADPFKLAECKLAIIHCAGYS K L Y F K L 1 0 0 1 0 0 1 1 0 0 1 1 0 2 1 0 0 0 1 0 0 0 10 0 1185.5706 B4DLT2;A0A024R071;O75694;E9PF10;B3KMK3 B4DLT2 1150 1159 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.0049471 96.668 1 0.35349 0.46687 NaN 1 Median 0.35349 0.46687 NaN 1 0 Median NaN NaN NaN 0 0 Median 2889300 1764700 1124600 2889300 1764700 1124600 0 0 0 8381 29 8565 30419 45846;45847 45847 2 LYGLLDPSVFHVK LIHKHNLEYPDFYRKLYGLLDPSVFHVKYR RKLYGLLDPSVFHVKYRARFFHLADLFLSS K L Y V K Y 0 0 0 1 0 0 0 1 1 0 3 1 0 1 1 1 0 0 1 2 0 0 13 0 1486.8184 Q9BVI4 Q9BVI4 330 342 NOC4L Nucleolar complex protein 4 homolog yes yes 3 0.013411 28.624 1 0.96732 1.1997 NaN 1 Median 0.96732 1.1997 NaN 1 0 Median NaN NaN NaN 0 0 Median 17062000 8909500 8152600 17062000 8909500 8152600 0 0 0 8382 1718 8566 30420 45848 45848 1 LYGLQEALEIAR GCILWANGIYLVCGRLYGLQEALEIAREMK CGRLYGLQEALEIAREMKCSHCQEAGATLG R L Y A R E 2 1 0 0 0 1 2 1 0 1 3 0 0 0 0 0 0 0 1 0 0 0 12 0 1374.7507 W5ZR30;Q9UGU0;A9JX13 W5ZR30 1872 1883 TCF20 Transcription factor 20 yes no 2 9.9173E-10 129.89 4 2 0.86363 1.2053 13.363 6 Median 0.85739 1.1344 11.16 4 0 Median 0.94844 1.3412 9.4038 2 0 Median 36619000 18574000 18045000 22400000 11673000 10728000 14219000 6901400 7317500 8383 1783 8567 30421;30422;30423;30424;30425;30426 45849;45850;45851;45852;45853;45854;45855;45856 45852 7 LYGPTNFSPIINHVAR QGIVEAYRSCLPQIKLYGPTNFSPIINHVA YGPTNFSPIINHVARFAAAATQQQTASQYF K L Y A R F 1 1 2 0 0 0 0 1 1 2 1 0 0 1 2 1 1 0 1 1 0 0 16 0 1797.9526 A0A024R994;O75131 A0A024R994 391 406 CPNE3 Copine-3 yes no 3 6.8145E-09 118.51 3 0.42303 0.56501 19.991 3 Median 0.42303 0.56501 19.991 3 0 Median NaN NaN NaN 0 0 Median 24764000 17652000 7111400 24764000 17652000 7111400 0 0 0 8384 214 8568 30427;30428;30429 45857;45858;45859;45860;45861;45862;45863;45864 45858 8 LYGSAGPPPTGEEDTAEKDEL KKKELEEIVQPIISKLYGSAGPPPTGEEDT PPPTGEEDTAEKDEL_______________ K L Y E L - 2 0 0 2 0 0 4 3 0 0 2 1 0 0 3 1 2 0 1 0 0 0 21 1 2174.9855 V9HWB4;P11021 V9HWB4 634 654 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 2 7.1748E-10 128.85 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3841800 3841800 0 3841800 3841800 0 0 0 0 8385 1252 8569 30430;30431 45865;45866 45865 2 LYGYFHDATR EVEIQSHLRHPNILRLYGYFHDATRVYLIL PNILRLYGYFHDATRVYLILEYAPLGTVYR R L Y T R V 1 1 0 1 0 0 0 1 1 0 1 0 0 1 0 0 1 0 2 0 0 0 10 0 1241.5829 O14965;Q5QPD4;B4DX16;A3KFJ0;B2R6Z3 O14965 196 205 AURKA Aurora kinase A yes no 3 0.0211 32.008 1 0.90866 1.2213 NaN 1 Median 0.90866 1.2213 NaN 1 0 Median NaN NaN NaN 0 0 Median 7650600 4259300 3391300 7650600 4259300 3391300 0 0 0 8386 1172 8570 30432 45867 45867 1 LYHLLR PARPFLLVASQRSVRLYHLLRQELTKKLMP LVASQRSVRLYHLLRQELTKKLMPNCKWVS R L Y L R Q 0 1 0 0 0 0 0 0 1 0 3 0 0 0 0 0 0 0 1 0 0 0 6 0 813.48611 B2RDN4;Q14137;B4DEN9;Q4G0D9;Q6DKJ9 B2RDN4 604 609 BOP1 Ribosome biogenesis protein BOP1 yes no 2 0.04378 105.82 1 0.86932 1.1672 NaN 1 Median 0.86932 1.1672 NaN 1 0 Median NaN NaN NaN 0 0 Median 20686000 11382000 9304100 20686000 11382000 9304100 0 0 0 8387 738 8571 30433 45868 45868 1 LYIAYQFLLAEDTK LEYQKVMREIEHLSRLYIAYQFLLAEDTKV RLYIAYQFLLAEDTKVRSAEELKEMQDKVI R L Y T K V 2 0 0 1 0 1 1 0 0 1 3 1 0 1 0 0 1 0 2 0 0 0 14 0 1686.8869 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q05D74;Q7Z2X1;Q5T821 A0A024R158 233 246 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 1.8408E-27 189.17 4 2 0.73674 0.97904 8.7363 6 Median 0.75344 1.0189 4.8234 4 0 Linear 0.71649 1.1059 3.9203 2 0 Median 350620000 204300000 146320000 299580000 170980000 128600000 51047000 33324000 17723000 8388 50 8572 30434;30435;30436;30437;30438;30439 45869;45870;45871;45872;45873;45874;45875;45876;45877;45878;45879 45870 11 LYIGNLNESVTPADLEK ______________________________ IGNLNESVTPADLEKVFAEHKISYSGQFLV K L Y E K V 1 0 2 1 0 0 2 1 0 1 3 1 0 0 1 1 1 0 1 1 0 0 17 0 1874.9626 Q9NZI8 Q9NZI8 4 20 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 9.2059E-19 161.04 4 1 0.79406 1.0061 3.9517 3 Median 0.79406 1.0061 3.9517 3 0 Median NaN NaN NaN 0 0 Median 26683000 10403000 16280000 18535000 10403000 8131800 8148200 0 8148200 8389 1772 8573 30440;30441;30442;30443;30444 45880;45881;45882;45883;45884;45885;45886 45882 7 LYIGNLSENAAPSDLESIFK ______________________________ LSENAAPSDLESIFKDAKIPVSGPFLVKTG K L Y F K D 2 0 2 1 0 0 2 1 0 2 3 1 0 1 1 3 0 0 1 0 0 0 20 0 2180.1001 O00425;F8WD15 O00425 4 23 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes no 2 1.7576E-24 157.37 3 0.71901 0.9042 10.606 3 Plateau 0.71901 0.9042 10.606 3 0 Plateau NaN NaN NaN 0 0 Median 26588000 15859000 10729000 26588000 15859000 10729000 0 0 0 8390 1167 8574 30445;30446;30447 45887;45888;45889;45890;45891;45892 45889 6 LYIQVFLK TITFSLEQSGTRPERLYIQVFLKKDDSVGY SGTRPERLYIQVFLKKDDSVGYRALVQTED R L Y L K K 0 0 0 0 0 1 0 0 0 1 2 1 0 1 0 0 0 0 1 1 0 0 8 0 1022.6165 Q8N766 Q8N766 405 412 EMC1 ER membrane protein complex subunit 1 yes yes 2 0.035833 48.504 1 0.54705 0.70167 NaN 1 Median 0.54705 0.70167 NaN 1 0 Median NaN NaN NaN 0 0 Median 3324000 2161500 1162500 3324000 2161500 1162500 0 0 0 8391 1642 8575 30448 45893 45893 1 LYLEQLR ELEETAQEKKLRLAKLYLEQLRQQEEEKAE EKKLRLAKLYLEQLRQQEEEKAEARAFEED K L Y L R Q 0 1 0 0 0 1 1 0 0 0 3 0 0 0 0 0 0 0 1 0 0 0 7 0 933.52837 O43818 O43818 85 91 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 0.0064925 137.44 1 2 0.57954 0.93246 18.766 3 Median 0.93319 1.2865 NaN 1 0 Median 0.57457 0.92956 0.44068 2 0 Median 161630000 98217000 63415000 46205000 24814000 21391000 115430000 73402000 42024000 8392 1188 8576 30449;30450;30451 45894;45895;45896;45897 45894 4 LYLIDLAGSEDNRR DQRERLAPFRQREGKLYLIDLAGSEDNRRT KLYLIDLAGSEDNRRTGNKGLRLKESGAIN K L Y R R T 1 2 1 2 0 0 1 1 0 1 3 0 0 0 0 1 0 0 1 0 0 0 14 1 1633.8424 Q14807;A0A024R632;B7Z9T5;H3BRB3 Q14807 270 283 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 3 0.00099676 80.69 5 2 0.76865 1.0648 18.016 5 Median 0.79735 1.1033 9.4371 4 0 Median 0.54078 0.77701 NaN 1 0 Median 54867000 28347000 26520000 43537000 21463000 22074000 11330000 6884100 4446400 8393 1497 8577 30452;30453;30454;30455;30456;30457;30458 45898;45899;45900;45901;45902;45903;45904;45905;45906;45907 45899 10 LYLINSPVVR DPVSIIQKYGADALRLYLINSPVVRAENLR ADALRLYLINSPVVRAENLRFKEEGVRDVL R L Y V R A 0 1 1 0 0 0 0 0 0 1 2 0 0 0 1 1 0 0 1 2 0 0 10 0 1172.6917 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z355;Q7Z3U5;Q6P0M4 Q59G75 642 651 IARS;DKFZp686L17145;DKFZp686L0869 Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.0031692 89.355 2 2 1.1603 1.6307 105.6 4 Median 0.46999 0.65109 4.1122 2 0 Median 2.8105 4.052 2.9928 2 0 Median 40152000 16078000 24074000 16136000 9936500 6199000 24017000 6141700 17875000 8394 1334 8578 30459;30460;30461;30462 45908;45909;45910;45911;45912 45909 5 LYLVSDVLYNSSAK SLSILKTPLPKKIARLYLVSDVLYNSSAKV RLYLVSDVLYNSSAKVANASYYRKFFETKL R L Y A K V 1 0 1 1 0 0 0 0 0 0 3 1 0 0 0 3 0 0 2 2 0 0 14 0 1570.8243 O15042;E7ET15 O15042 595 608 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 2 0.0023388 86.313 1 1.1844 1.5641 NaN 1 Median 1.1844 1.5641 NaN 1 0 Median NaN NaN NaN 0 0 Median 2374400 1206000 1168300 2374400 1206000 1168300 0 0 0 8395 1175 8579 30463 45913 45913 1 LYNVVVDTEVTGK DTSATTALELVAGERLYNVVVDTEVTGKKL ERLYNVVVDTEVTGKKLLERGELKRRYTII R L Y G K K 0 0 1 1 0 0 1 1 0 0 1 1 0 0 0 0 2 0 1 4 0 0 13 0 1435.7559 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 549 561 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 1.5574E-10 134.3 5 1 0.70506 0.91176 1.8751 4 Median 0.70506 0.91176 1.8751 4 0 Median NaN NaN NaN 0 0 Median 312340000 159920000 152430000 269980000 159920000 110060000 42366000 0 42366000 8396 50 8580 30464;30465;30466;30467;30468;30469 45914;45915;45916;45917;45918;45919;45920;45921;45922;45923 45921 9 LYNVVVDTEVTGKK DTSATTALELVAGERLYNVVVDTEVTGKKL RLYNVVVDTEVTGKKLLERGELKRRYTIIP R L Y K K L 0 0 1 1 0 0 1 1 0 0 1 2 0 0 0 0 2 0 1 4 0 0 14 1 1563.8508 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 549 562 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2;3 0.00010781 115 7 1 0.71519 0.9141 8.9881 8 Median 0.73041 0.89612 8.0842 7 0 Median 0.64397 1.0348 NaN 1 0 Median 213090000 128220000 84873000 198360000 119520000 78846000 14727000 8699500 6027200 8397 50 8581 30470;30471;30472;30473;30474;30475;30476;30477 45924;45925;45926;45927;45928;45929;45930;45931;45932;45933;45934;45935;45936 45924 13 LYNYFYDR EIEIQAHLHHPNILRLYNYFYDRRRIYLIL HHPNILRLYNYFYDRRRIYLILEYAPRGEL R L Y D R R 0 1 1 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 3 0 0 0 8 0 1152.524 B2RC06;J3KT86;Q96GD4;J3KTD6;J3QLN8;J3QR41 B2RC06 140 147 AURKB Aurora kinase B no no 2 0.0037835 105.57 5 1 0.9474 1.2716 6.0277 5 Median 0.99765 1.3646 4.502 4 0 Linear 0.73679 1.176 NaN 1 0 Median 153310000 76976000 76336000 120600000 59726000 60874000 32712000 17250000 15462000 8398 731;1686 8582 30478;30479;30480;30481;30482;30483 45937;45938;45939;45940;45941;45942;45943;45944;45945;45946;45947 45943 11 LYPFQCFLAHDQAVR NSPLQRIRLSDGSLKLYPFQCFLAHDQAVR LYPFQCFLAHDQAVRTLQWCKANSHFLVSA K L Y V R T 2 1 0 1 1 2 0 0 1 0 2 0 0 2 1 0 0 0 1 1 0 0 15 0 1863.909 Q8WUA4;Q53SY8;H0Y4Q6;H7C3X9 Q8WUA4 603 617 GTF3C2 General transcription factor 3C polypeptide 2 yes no 3 0.0017957 71.344 2 0.54645 0.75236 0.53231 2 Median 0.54645 0.75236 0.53231 2 0 Median NaN NaN NaN 0 0 Median 18174000 11880000 6293100 18174000 11880000 6293100 0 0 0 8399 1663 8583 30484;30485 45948;45949 45949 2 LYPGSVYGR SRQQRKAEIMESIKRLYPGSVYGRLIDLCQ MESIKRLYPGSVYGRLIDLCQPTQKKYQIA R L Y G R L 0 1 0 0 0 0 0 2 0 0 1 0 0 0 1 1 0 0 2 1 0 0 9 0 1010.5185 Q14683;G8JLG1;Q6P2R1;Q6MZR8;A8K7A6;B7Z709 Q14683 510 518 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.027557 47.067 2 0.4973 0.66543 4.6498 2 Median NaN NaN NaN 0 0 Median 0.4973 0.66543 4.6498 2 0 Median 10401000 6920400 3480700 0 0 0 10401000 6920400 3480700 8400 1492 8584 30486;30487 45950;45951 45951 2 LYPLRK HEENLKTKKQQRKERLYPLRKYAVKA____ TKKQQRKERLYPLRKYAVKA__________ R L Y R K Y 0 1 0 0 0 0 0 0 0 0 2 1 0 0 1 0 0 0 1 0 0 0 6 1 788.49086 P42766 P42766 113 118 RPL35 60S ribosomal protein L35 yes yes 2 0.04322 96.337 1 0.9016 1.1952 NaN 1 Median 0.9016 1.1952 NaN 1 0 Median NaN NaN NaN 0 0 Median 646540000 349030000 297510000 646540000 349030000 297510000 0 0 0 8401 1340 8585 30488 45952 45952 1 LYPVLQQSLVR SWAEAVRLGLEGCQRLYPVLQQSLVRAARR GCQRLYPVLQQSLVRAARRRGAAAQP____ R L Y V R A 0 1 0 0 0 2 0 0 0 0 3 0 0 0 1 1 0 0 1 2 0 0 11 0 1314.766 Q5RKV6 Q5RKV6 251 261 EXOSC6 Exosome complex component MTR3 yes yes 2 0.016706 51.445 2 0.66282 0.88291 6.5001 2 Median 0.66282 0.88291 6.5001 2 0 Median NaN NaN NaN 0 0 Median 30947000 18334000 12613000 30947000 18334000 12613000 0 0 0 8402 1562 8586 30489;30490 45953;45954 45953 2 LYQEVEIASVDAFQGR YLVQYMQFSGSLHTKLYQEVEIASVDAFQG YQEVEIASVDAFQGREKDFIILSCVRANEH K L Y G R E 2 1 0 1 0 2 2 1 0 1 1 0 0 1 0 1 0 0 1 2 0 0 16 0 1823.9054 A0A024R7L5;A0A024R7L8;Q92900;B3KY55 A0A024R7L5 817 832 UPF1 Regulator of nonsense transcripts 1 yes no 2 8.2638E-13 126.83 3 0.41146 0.57715 NaN 1 Median 0.41146 0.57715 NaN 1 0 Median NaN NaN NaN 0 0 Median 9383000 7795800 1587200 9383000 7795800 1587200 0 0 0 8403 180 8587 30491;30492;30493 45955;45956;45957 45957 3 LYQGINQLPNVIQALEK KKFQRQAANLQDCYRLYQGINQLPNVIQAL QGINQLPNVIQALEKHEGKHQKLLLAVFVT R L Y E K H 1 0 2 0 0 3 1 1 0 2 3 1 0 0 1 0 0 0 1 1 0 0 17 0 1940.0731 V9H019;Q53GS1;Q53FK0;E9PHA6;P43246;Q53RU4;B4DL39;B4DSB9;V9H068;V9H0D5;V9H023;B4DN49 V9H019 407 423 MSH2 DNA mismatch repair protein Msh2 yes no 2 1.1673E-10 148.52 4 0.29931 0.37886 18.292 2 Median 0.29931 0.37886 18.292 2 0 Median NaN NaN NaN 0 0 Median 21149000 17449000 3699900 21149000 17449000 3699900 0 0 0 8404 1029 8588 30494;30495;30496;30497 45958;45959;45960;45961 45958 4 LYQHEINLFK QPQDVVSKYKTLAQKLYQHEINLFKSKTNS TLAQKLYQHEINLFKSKTNSQKGASSTWMK K L Y F K S 0 0 1 0 0 1 1 0 1 1 2 1 0 1 0 0 0 0 1 0 0 0 10 0 1303.6925 B2R5U7;Q03701 B2R5U7 212 221 CEBPZ CCAAT/enhancer-binding protein zeta no no 3 0.0064942 67.726 3 0.75218 0.94209 7.2555 3 Median 0.75218 0.94209 7.2555 3 0 Median NaN NaN NaN 0 0 Median 60281000 34903000 25378000 60281000 34903000 25378000 0 0 0 8405 693;1441 8589 30498;30499;30500 45962;45963;45964 45963 3 LYQPEYQEVSTEEQREEISGK AANSLEAFIFETQDKLYQPEYQEVSTEEQR QEVSTEEQREEISGKLSAASTWLEDEGVGA K L Y G K L 0 1 0 0 0 3 6 1 0 1 1 1 0 0 1 2 1 0 2 1 0 0 21 1 2541.1871 B7Z766;A0A087X054;B7Z2N4;B3KXH0;Q9Y4L1;B7Z602 B7Z766 603 623 HYOU1 Hypoxia up-regulated protein 1 yes no 3 3.5581E-05 94.325 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1306000 1306000 0 1306000 1306000 0 0 0 0 8406 369 8590 30501 45965;45966 45966 2 LYQYYLDHLTGVGNNSEGGR HEYVLAVRMTSIQCKLYQYYLDHLTGVGNN LDHLTGVGNNSEGGRGKAGAKLFQDFQMLS K L Y G R G 0 1 2 1 0 1 1 4 1 0 3 0 0 0 0 1 1 0 3 1 0 0 20 0 2255.0607 A4LAA3;P46100;B4DHH8;B4DLE1 A4LAA3 1846 1865 ATRX Transcriptional regulator ATRX yes no 3 0.0017611 39.387 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7459800 7459800 0 7459800 7459800 0 0 0 0 8407 556 8591 30502 45967 45967 1 LYRETNEPVK IYNLVQKALKPPPIKLYRETNEPVKTKTRT PPPIKLYRETNEPVKTKTRTFNTSTGGLLL K L Y V K T 0 1 1 0 0 0 2 0 0 0 1 1 0 0 1 0 1 0 1 1 0 0 10 1 1247.651 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356 A0A024R1N4 288 297 XRCC6 X-ray repair cross-complementing protein 6 yes no 2;3 0.0060642 89.029 5 0.50697 0.67492 10.884 5 Median 0.50697 0.67492 10.884 5 0 Median NaN NaN NaN 0 0 Median 137300000 89106000 48192000 137300000 89106000 48192000 0 0 0 8408 62 8592 30503;30504;30505;30506;30507 45968;45969;45970;45971;45972;45973 45968 6 LYRVEYAK ______________________________ MAESSDKLYRVEYAKSGRASCKKCSESIPK K L Y A K S 1 1 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 2 1 0 0 8 1 1040.5655 A0A024R3T8;P09874;B4E0E1;B2R5W3;Q05D33;Q6PJL0;Q5VX84;Q5VX85 A0A024R3T8 8 15 PARP1 Poly [ADP-ribose] polymerase 1 yes no 3 0.038416 25.137 2 1.1542 1.5111 21.39 2 Median 1.1542 1.5111 21.39 2 0 Median NaN NaN NaN 0 0 Median 93850000 44585000 49265000 93850000 44585000 49265000 0 0 0 8409 107 8593 30508;30509 45974;45975 45974 2 LYSILGTTLK GGDTVAIGGVDGNVRLYSILGTTLKDEGKL DGNVRLYSILGTTLKDEGKLLEAKGPVTDV R L Y L K D 0 0 0 0 0 0 0 1 0 1 3 1 0 0 0 1 2 0 1 0 0 0 10 0 1107.654 V9HWG7;Q53H17;Q53GN4;Q59ER5;O75083;B3KXN4;B4DY05 V9HWG7 471 480 HEL-S-52;WDR1 WD repeat-containing protein 1 yes no 2 0.0031609 96.331 2 1.0677 1.3846 6.5901 2 Median 1.0677 1.3846 6.5901 2 0 Median NaN NaN NaN 0 0 Median 6689700 3394000 3295700 6689700 3394000 3295700 0 0 0 8410 1195 8594 30510;30511 45976;45977;45978 45978 3 LYSILQGDSPTK LFENQTPAHVYYRWKLYSILQGDSPTKWRT RWKLYSILQGDSPTKWRTEDFRMFKNGSFW K L Y T K W 0 0 0 1 0 1 0 1 0 1 2 1 0 0 1 2 1 0 1 0 0 0 12 0 1320.6925 O15042 O15042 477 488 U2SURP U2 snRNP-associated SURP motif-containing protein yes yes 2 0.013629 95.483 2 0.57777 0.75263 NaN 1 Median 0.57777 0.75263 NaN 1 0 Median NaN NaN NaN 0 0 Median 3032300 2368400 663860 3032300 2368400 663860 0 0 0 8411 1175 8595 30512;30513 45979;45980 45979 2 LYSLALHPNAFK QQEKSPVNTKSLFKRLYSLALHPNAFKRLG FKRLYSLALHPNAFKRLGASLAFNNIYREF R L Y F K R 2 0 1 0 0 0 0 0 1 0 3 1 0 1 1 1 0 0 1 0 0 0 12 0 1372.7503 P78527;B4DL41 P78527 1063 1074 PRKDC DNA-dependent protein kinase catalytic subunit yes no 3 0.044454 21.23 1 0.43992 0.55351 NaN 1 Median 0.43992 0.55351 NaN 1 0 Median NaN NaN NaN 0 0 Median 15303000 10533000 4770500 15303000 10533000 4770500 0 0 0 8412 1427 8596 30514 45981 45981 1 LYSLPNPSVLVSLR VFSLIKSCYKQVSSKLYSLPNPSVLVSLRL KLYSLPNPSVLVSLRLDFLRIICSHEHYVT K L Y L R L 0 1 1 0 0 0 0 0 0 0 4 0 0 0 2 3 0 0 1 2 0 0 14 0 1556.8926 Q96N67;A0A1B0GWE0 Q96N67 1105 1118 DOCK7 Dedicator of cytokinesis protein 7 yes no 2 0.0013851 88.803 2 0.82606 1.1321 8.665 2 Median 0.82606 1.1321 8.665 2 0 Median NaN NaN NaN 0 0 Median 8361400 4748500 3612900 8361400 4748500 3612900 0 0 0 8413 1696 8597 30515;30516 45982;45983;45984;45985 45984 4 LYSPSQIGAFVLMK VRASNGDAWVEAHGKLYSPSQIGAFVLMKM KLYSPSQIGAFVLMKMKETAENYLGHTAKN K L Y M K M 1 0 0 0 0 1 0 1 0 1 2 1 1 1 1 2 0 0 1 1 0 0 14 0 1552.8323 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;Q2F839 B7Z4V2 146 159 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 0.02572 41.689 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5922600 0 5922600 0 0 0 5922600 0 5922600 8414 910 8598 30517 45986 45986 1 LYSVSYLLK RTPCEEILVKHVGSRLYSVSYLLKDKGEYT KHVGSRLYSVSYLLKDKGEYTLVVKWGDEH R L Y L K D 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 2 0 0 2 1 0 0 9 0 1084.6168 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;Q86TQ3 P21333 2613 2621 FLNA;FLJ00119 Filamin-A yes no 2 2.5342E-05 143.61 4 1 0.93914 1.1842 34.269 5 Median 0.93586 1.1835 5.0811 4 0 Median 1.8391 2.5425 NaN 1 0 Median 100250000 49394000 50860000 95383000 47751000 47631000 4870400 1642400 3228100 8415 1287 8599 30518;30519;30520;30521;30522 45987;45988;45989;45990;45991;45992;45993 45988 7 LYTEDEFEK RTGRAGREDSGICYRLYTEDEFEKFDKMTV SGICYRLYTEDEFEKFDKMTVPEIQRCNLA R L Y E K F 0 0 0 1 0 0 3 0 0 0 1 1 0 1 0 0 1 0 1 0 0 0 9 0 1172.5237 B4DIS6;Q9H6R0;I3L1L6;Q9NPV4;Q05BE5 B4DIS6 476 484 DHX33;DKFZp762F2011 Putative ATP-dependent RNA helicase DHX33 yes no 2 0.013614 57.96 1 0.74106 0.94423 NaN 1 Median 0.74106 0.94423 NaN 1 0 Median NaN NaN NaN 0 0 Median 4450800 2940700 1510100 4450800 2940700 1510100 0 0 0 8416 811 8600 30523 45994 45994 1 LYTLQDK RVTAIHIDPATHRQKLYTLQDKAQVADVVV DPATHRQKLYTLQDKAQVADVVVSRWLRVT K L Y D K A 0 0 0 1 0 1 0 0 0 0 2 1 0 0 0 0 1 0 1 0 0 0 7 0 879.47018 A0A0U1RQF0;P49327 A0A0U1RQF0 1066 1072 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0088523 84.244 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4328800 4328800 0 4328800 4328800 0 0 0 0 8417 486 8601 30524 45995 45995 1 LYTLVTYVPVTTFK RLSRKRNEDEDSPNKLYTLVTYVPVTTFKI KLYTLVTYVPVTTFKIFFLR__________ K L Y F K I 0 0 0 0 0 0 0 0 0 0 2 1 0 1 1 0 4 0 2 3 0 0 14 0 1643.9174 H7C2W9;C9JU56;B7Z4E3;B2R4C1;B7Z4C8;P62899;Q76N53 H7C2W9 90 103 RPL31 60S ribosomal protein L31 yes no 2 1.7405E-55 212.28 10 3 0.8077 1.0549 28.092 8 Median 0.8858 1.1795 14.021 5 0 Median 0.43505 0.69501 13.247 3 0 Median 5650800000 3238000000 2412800000 3580700000 1798000000 1782700000 2070200000 1440000000 630200000 8418 682 8602 30525;30526;30527;30528;30529;30530;30531;30532;30533;30534;30535;30536;30537 45996;45997;45998;45999;46000;46001;46002;46003;46004;46005;46006;46007;46008;46009;46010;46011;46012;46013;46014;46015;46016;46017;46018;46019 46006 23 LYTSAPNTSQGK DMNSEGNVDFECDTKLYTSAPNTSQGKDNS DTKLYTSAPNTSQGKDNSVLLVLSSDESQQ K L Y G K D 1 0 1 0 0 1 0 1 0 0 1 1 0 0 1 2 2 0 1 0 0 0 12 0 1265.6252 Q5QJE6;J3KP30;B7Z854 Q5QJE6 426 437 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2 2.1027E-21 164.97 4 2 0.86936 1.1038 6.6646 6 Median 0.90076 1.1308 3.8086 4 0 Median 0.6608 1.0126 4.1247 2 0 Median 141980000 77202000 64775000 94260000 48646000 45614000 47717000 28556000 19162000 8419 1561 8603 30538;30539;30540;30541;30542;30543 46020;46021;46022;46023;46024;46025;46026;46027;46028;46029;46030;46031 46027 12 LYVGGLSQDISEADLQNQFSR ______________________________ SQDISEADLQNQFSRFGEVSDVEIITRKDD R L Y S R F 1 1 1 2 0 3 1 2 0 1 3 0 0 1 0 3 0 0 1 1 0 0 21 0 2339.1394 F5H101;A0A024R250;Q76FK4;F8WE42;B4DM91;F5GWN9;A0A0A0MSJ1;F5H8B8;F5H532;F5H0I5;F5GXV1 F5H101 10 30 NOL8 Nucleolar protein 8 yes no 2 8.3998E-32 164.15 4 0.61224 0.85873 32.534 4 Median 0.61224 0.85873 32.534 4 0 Median NaN NaN NaN 0 0 Median 19007000 10540000 8467400 19007000 10540000 8467400 0 0 0 8420 80 8604 30544;30545;30546;30547 46032;46033;46034;46035;46036;46037;46038;46039;46040 46035 9 LYVHEAVK QAATGFLVDPVRNQRLYVHEAVKAGVVGPE DPVRNQRLYVHEAVKAGVVGPELHEQLLSA R L Y V K A 1 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 1 2 0 0 8 0 957.52837 Q15149;D3DWL0 Q15149 3544 3551 PLEC;PLEC1 Plectin yes no 2;3 0.015762 49.423 4 0.70875 0.87482 3.5205 3 Median 0.70875 0.87482 3.5205 3 0 Median NaN NaN NaN 0 0 Median 60576000 38274000 22302000 60576000 38274000 22302000 0 0 0 8421 1507 8605 30548;30549;30550;30551 46041;46042;46043;46044;46045 46043 5 LYVTYFGGDEAAGLEADLECK ALELLTQEFGIPIERLYVTYFGGDEAAGLE GGDEAAGLEADLECKQIWQNLGLDDTKILP R L Y C K Q 3 0 0 2 1 0 3 3 0 0 3 1 0 1 0 0 1 0 2 1 0 0 21 0 2320.0569 P49588 P49588 133 153 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 3.2874E-07 59.898 1 0.72724 0.93115 NaN 1 Median 0.72724 0.93115 NaN 1 0 Median NaN NaN NaN 0 0 Median 4341800 2898500 1443300 4341800 2898500 1443300 0 0 0 8422 1352 8606 30552 46046;46047 46046 2 LYYDTDYGSK EASVDPSLSWGQRKKLYYDTDYGSKSRGRQ GQRKKLYYDTDYGSKSRGRQSQQEAEEEER K L Y S K S 0 0 0 2 0 0 0 1 0 0 1 1 0 0 0 1 1 0 3 0 0 0 10 0 1223.5346 Q9NQZ2 Q9NQZ2 135 144 UTP3 Something about silencing protein 10 yes yes 2 0.0026771 106.68 3 2 0.8014 1.0102 12.16 5 Median 0.95039 1.1663 14.683 3 0 Plateau 0.65781 0.99118 1.4734 2 0 Median 84864000 44589000 40275000 62782000 31428000 31354000 22082000 13161000 8921400 8423 1755 8607 30553;30554;30555;30556;30557 46048;46049;46050;46051;46052;46053;46054 46048 7 LYYFQYPCYQEGLR LARHSNVNLTIFTARLYYFQYPCYQEGLRS RLYYFQYPCYQEGLRSLSQEGVAVEIMDYE R L Y L R S 0 1 0 0 1 2 1 1 0 0 2 0 0 1 1 0 0 0 4 0 0 0 14 0 1898.8662 M4VP52;Q59GY0;Q9NRW3 M4VP52 123 136 APOBEC3C DNA dC->dU-editing enzyme APOBEC-3C yes no 2 1.3577E-06 129.16 3 0.79778 1.0817 28.88 2 Median 0.79778 1.0817 28.88 2 0 Median NaN NaN NaN 0 0 Median 11080000 5449600 5630700 11080000 5449600 5630700 0 0 0 8424 1161 8608 30558;30559;30560 46055;46056;46057;46058 46056 4 MAAFPLEPK EHKDDQLTLTPMGRKMAAFPLEPKFAKTIL TPMGRKMAAFPLEPKFAKTILISPKFHCTE K M A P K F 2 0 0 0 0 0 1 0 0 0 1 1 1 1 2 0 0 0 0 0 0 0 9 0 1002.5208 B4DIS6;Q9H6R0;I3L1L6;Q9NPV4;Q05BE5 B4DIS6 556 564 DHX33;DKFZp762F2011 Putative ATP-dependent RNA helicase DHX33 yes no 2 0.012445 50.607 2 0.84133 1.119 8.5619 2 Median NaN NaN NaN 0 0 Median 0.84133 1.119 8.5619 2 0 Median 6079900 3345800 2734100 0 0 0 6079900 3345800 2734100 8425 811 8609 30561;30562 46059;46060 46059 291 2 MAAGIVASR ______________________________ ______________________________ - M A S R R 3 1 0 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 1 0 0 9 0 874.46947 Q13011;M0QZX8;M0R1A2;M0QZW4;B4DVS4 Q13011 1 9 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial yes no 1 0.039637 71.296 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2692700 0 2692700 2692700 0 2692700 0 0 0 8426 1461 8610 30563 46061 46061 1 MADPESNQEAVNSSAAR GLGKRGAAEARRQEKMADPESNQEAVNSSA DPESNQEAVNSSAARTDEAPQGAAGAVGMT K M A A R T 4 1 2 1 0 1 2 0 0 0 0 0 1 0 1 3 0 0 0 1 0 0 17 0 1775.7744 Q14669;G5E9G6;H7C1L9 Q14669 356 372 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 2 2.0208E-07 77.185 1 0.41224 0.53502 NaN 1 Median NaN NaN NaN 0 0 Median 0.41224 0.53502 NaN 1 0 Median 2657300 1931800 725490 0 0 0 2657300 1931800 725490 8427 1489 8611 30564 46062;46063 46063 669 2 MAEAGFIHCPTENEPDLAQCFFCFK KNWPFLEGCACTPERMAEAGFIHCPTENEP TENEPDLAQCFFCFKELEGWEPDDDPIEEH R M A F K E 3 0 1 1 3 1 3 1 1 1 1 1 1 4 2 0 1 0 0 0 0 0 25 0 3018.2809 B7Z7B9;E7CU85;A0A0B4J1S3;O15392;A3E0Z5;H3BLT4;K7EMW2;A3E0Z4;A3E0Z6;A3E0Z7;A3E0Z8;K7EP76;K7ELG2 B7Z7B9 38 62 BIRC5 Baculoviral IAP repeat-containing protein 5 yes no 3 5.717E-14 101.6 3 0.86987 1.1037 18.436 3 Median 0.86987 1.1037 18.436 3 0 Median NaN NaN NaN 0 0 Median 48829000 26032000 22797000 48829000 26032000 22797000 0 0 0 8428 413 8612 30565;30566;30567 46064;46065;46066;46067;46068;46069 46069 130 6 MAGDPVANVR GQDITTKHMLPTVLRMAGDPVANVRFNVAK PTVLRMAGDPVANVRFNVAKSLQKIGPILD R M A V R F 2 1 1 1 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 2 0 0 10 0 1028.5073 B4DQY1;B4DDF7;A8K7B7;A8K3H8;P30153;B3KQV6;Q8NB89;B4DE69;E9PH38;B4E1Q0 B4DQY1 494 503 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 2 0.0014907 68.224 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8429 595 8613 30568 46070 46070 203 1 MAGIDDCYTSAR ______________________________ ______________________________ M M A A R G 2 1 0 2 1 0 0 1 0 1 0 0 1 0 0 1 1 0 1 0 0 0 12 0 1358.5595 Q8NI62 Q8NI62 2 13 OK/KNS-cl.6 yes yes 2 0.0033278 65.5 2 0.70459 0.96956 NaN 1 Median 0.70459 0.96956 NaN 1 0 Median NaN NaN NaN 0 0 Median 4814400 2718300 2096200 4814400 2718300 2096200 0 0 0 8430 1657 8614;8615 30569;30570 46071;46072 46071 734 2 MAIMVQSPMFDGK SCKKCSESIPKDSLRMAIMVQSPMFDGKVP LRMAIMVQSPMFDGKVPHWYHFSCFWKVGH R M A G K V 1 0 0 1 0 1 0 1 0 1 0 1 3 1 1 1 0 0 0 1 0 0 13 0 1453.6768 A0A024R3T8;P09874;B4E0E1;B2R5W3;Q05D33;Q6PJL0;Q5VX84;Q5VX85 A0A024R3T8 35 47 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 3.1355E-22 120.09 4 0.31305 0.47296 6.927 2 Median NaN NaN NaN 0 0 Median 0.31305 0.47296 6.927 2 0 Median 32106000 23210000 8895500 0 0 0 32106000 23210000 8895500 8431 107 8616 30571;30572;30573;30574 46073;46074;46075;46076 46075 62;63;64 3 MAKAEMMEEDR TVNILEEMNLTELCKMAKAEMMEEDRRAYF ELCKMAKAEMMEEDRRAYFLRHFGDEDQAM K M A D R R 2 1 0 1 0 0 3 0 0 0 0 1 3 0 0 0 0 0 0 0 0 0 11 1 1339.557 B4DQ44 B4DQ44 86 96 yes yes 2 0.011423 72.325 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8432 848 8617 30575 46077 46077 299;300;301 1 MALDIEIATYR MARHLREYQDLLNVKMALDIEIATYRKLLE LNVKMALDIEIATYRKLLEGEESRISLPLP K M A Y R K 2 1 0 1 0 0 1 0 0 2 1 0 1 0 0 0 1 0 1 0 0 0 11 0 1294.6591 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;B0YJC5;H7C5W5;B3KWQ6;P41219 V9HWE1 391 401 HEL113;VIM;PRPH Vimentin;Peripherin yes no 2 6.418E-07 117.7 4 3 0.61187 0.81482 44.368 5 Median 0.56797 0.7528 4.6178 3 0 Median 1.1228 1.7256 8.947 2 0 Median 93572000 50569000 43004000 42406000 23861000 18545000 51166000 26708000 24458000 8433 1245 8618 30576;30577;30578;30579;30580;30581;30582 46078;46079;46080;46081;46082;46083;46084;46085;46086 46082 490 9 MALDIEIATYRK MARHLREYQDLLNVKMALDIEIATYRKLLE NVKMALDIEIATYRKLLEGEESRISLPLPN K M A R K L 2 1 0 1 0 0 1 0 0 2 1 1 1 0 0 0 1 0 1 0 0 0 12 1 1422.7541 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;B0YJC5;H7C5W5;B3KWQ6;P41219 V9HWE1 391 402 HEL113;VIM;PRPH Vimentin;Peripherin yes no 2;3 0.007943 96.015 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7568000 1845900 5722100 1845900 1845900 0 5722100 0 5722100 8434 1245 8619 30583;30584;30585;30586 46087;46088;46089;46090 46088 490 4 MALNHPYFNDLDNQIK SKMLIYDPAKRISGKMALNHPYFNDLDNQI ALNHPYFNDLDNQIKKM_____________ K M A I K K 1 0 3 2 0 1 0 0 1 1 2 1 1 1 1 0 0 0 1 0 0 0 16 0 1931.92 A0A024QZP7;P06493;Q5H9N4;A0A024QZJ8 A0A024QZP7 280 295 CDC2;CDK1;DKFZp686L20222 Cyclin-dependent kinase 1 yes no 3 0.00011793 51.888 1 0.98568 1.4834 NaN 1 Median NaN NaN NaN 0 0 Median 0.98568 1.4834 NaN 1 0 Median 20618000 11161000 9457000 0 0 0 20618000 11161000 9457000 8435 18 8620 30587 46091 46091 1 1 MANVLDEPGQDLEADFPK LFGPARDDVLAMAVKMANVLDEPGQDLEAD VLDEPGQDLEADFPKNPLDINPSVDFLFDC K M A P K N 2 0 1 3 0 1 2 1 0 0 2 1 1 1 2 0 0 0 0 1 0 0 18 0 1987.9197 A6NHN7;A6NHB5;Q14202 A6NHN7 987 1004 ZMYM3 Zinc finger MYM-type protein 3 yes no 2 0.00056593 99.011 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 444020 444020 0 444020 444020 0 0 0 0 8436 565 8621 30588;30589 46092;46093;46094 46093 198 3 MAPQVWRRR ______________________________ ______________________________ - M A R R T 1 3 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 1 0 1 0 0 9 2 1198.6506 B3KPV5;O00566;U3KQ48 B3KPV5 1 9 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 3 0.03716 50.04 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8437 767 8622 30590 46095 46095 1 MAPVITEETTLQLEDIIK NSLLEETLHFDHAVRMAPVITEETTLQLED VITEETTLQLEDIIKQRIRDQAWDDVVRKE R M A I K Q 1 0 0 1 0 1 3 0 0 3 2 1 1 0 1 0 3 0 0 1 0 0 18 0 2043.081 B3KPV5;O00566 B3KPV5 413 430 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 2 2.9533E-24 161.21 7 2 0.91804 1.2407 9.8665 9 Median 0.99691 1.2661 11.364 7 0 Median 0.78227 1.2302 1.2026 2 0 Median 111620000 61387000 50236000 47964000 25030000 22934000 63660000 36357000 27302000 8438 767 8623;8624 30591;30592;30593;30594;30595;30596;30597;30598;30599 46096;46097;46098;46099;46100;46101;46102;46103;46104;46105;46106;46107;46108;46109;46110;46111 46097 280 16 MAPVPLDDSNRPASLTK KMIASDSHRPEVKLKMAPVPLDDSNRPASL PVPLDDSNRPASLTKDRLLASTLVHSVKKE K M A T K D 2 1 1 2 0 0 0 0 0 0 2 1 1 0 3 2 1 0 0 1 0 0 17 1 1810.9247 Q6DCA8;E9PK09;E9PQN2;E9PKI6;E9PK91;Q9NYF8;E9PJA7 Q6DCA8 551 567 BCLAF1 Bcl-2-associated transcription factor 1 yes no 3 0.045698 53.491 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1803900 1803900 0 1803900 1803900 0 0 0 0 8439 1036 8625 30600 46112 46112 1 MAPYQGPDAVPGALDYK RRELPPDQAEYCIARMAPYQGPDAVPGALD PYQGPDAVPGALDYKSFSTALYGESDL___ R M A Y K S 3 0 0 2 0 1 0 2 0 0 1 1 1 0 3 0 0 0 2 1 0 0 17 0 1791.8502 A0A0S2Z3G9;O43707;Q96BG6;F5GXS2;H7C144;A0A0S2Z3X3;A0A0S2Z3C0 A0A0S2Z3G9 883 899 ACTN4 Alpha-actinin-4 yes no 2 0.014886 47.288 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8440 451 8626 30601 46113 46113 155 1 MATEVAADALGEEWK EVDDERKLRTFYEKRMATEVAADALGEEWK MATEVAADALGEEWKGYVVRISGGNDKQGF R M A W K G 4 0 0 1 0 0 3 1 0 0 1 1 1 0 0 0 1 1 0 1 0 0 15 0 1619.7501 Q96DV6;A2A3R6;P62753;A2A3R5;A2A3R7 Q96DV6 32 46 RPS6 40S ribosomal protein S6 yes no 2 8.749E-23 140.14 2 0.39847 0.62836 2.2391 2 Median NaN NaN NaN 0 0 Median 0.39847 0.62836 2.2391 2 0 Median 541780000 389590000 152200000 0 0 0 541780000 389590000 152200000 8441 535 8627 30602;30603 46114;46115;46116;46117 46117 183 4 MATLTSGGEKPNK YNHPKPNLLYQKFVKMATLTSGGEKPNKDL VKMATLTSGGEKPNKDLESCSDDDNQGSKS K M A N K D 1 0 1 0 0 0 1 2 0 0 1 2 1 0 1 1 2 0 0 0 0 0 13 1 1332.6708 Q5T3I0;A8KAG1;A0A0A0MRK1;E9PAV9 Q5T3I0 112 124 GPATCH4 G patch domain-containing protein 4 yes no 2 0.01107 67.726 1 0.66077 0.9031 NaN 1 Median NaN NaN NaN 0 0 Median 0.66077 0.9031 NaN 1 0 Median 1822700 993840 828870 0 0 0 1822700 993840 828870 8442 1568 8628 30604 46118 46118 714 1 MAVLALLAK KCDSWWAKDSPLETKMAVLALLAKILQIDS SPLETKMAVLALLAKILQIDSSVSFNTSHG K M A A K I 3 0 0 0 0 0 0 0 0 0 3 1 1 0 0 0 0 0 0 1 0 0 9 0 928.57796 P78527 P78527 1643 1651 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.013958 85.265 5 0.61548 0.76319 NaN 1 Median 0.61548 0.76319 NaN 1 0 Median NaN NaN NaN 0 0 Median 6927400 6116500 810910 6927400 6116500 810910 0 0 0 8443 1427 8629;8630 30605;30606;30607;30608;30609 46119;46120;46121;46122;46123;46124 46124 6 MAVTFIGNSTAIQELFK NVKTAVCDIPPRGLKMAVTFIGNSTAIQEL VTFIGNSTAIQELFKRISEQFTAMFRRKAF K M A F K R 2 0 1 0 0 1 1 1 0 2 1 1 1 2 0 1 2 0 0 1 0 0 17 0 1868.9706 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;B4DMU8;Q96B85;B4DXZ5;B4DMJ5;Q6P602;A4UCU2 Q5JP53 345 361 TUBB Tubulin beta chain yes no 2 6.5454E-51 211.38 3 0.39556 0.49904 4.1807 2 Median 0.39556 0.49904 4.1807 2 0 Median NaN NaN NaN 0 0 Median 55222000 38832000 16390000 55222000 38832000 16390000 0 0 0 8444 1241 8631;8632 30610;30611;30612 46125;46126;46127;46128 46125 483 4 MAVTFIGNSTAIQELFKR NVKTAVCDIPPRGLKMAVTFIGNSTAIQEL TFIGNSTAIQELFKRISEQFTAMFRRKAFL K M A K R I 2 1 1 0 0 1 1 1 0 2 1 1 1 2 0 1 2 0 0 1 0 0 18 1 2025.0717 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;B4DMU8;Q96B85;B4DXZ5;B4DMJ5;Q6P602;A4UCU2 Q5JP53 345 362 TUBB Tubulin beta chain yes no 3 1.149E-31 172.91 3 3 0.48974 0.64955 114.41 5 Median 0.43118 0.56852 25.522 3 0 Median 2.5883 4.1331 12.833 2 0 Median 73360000 38332000 35028000 41745000 30405000 11340000 31615000 7926900 23688000 8445 1241 8633;8634 30613;30614;30615;30616;30617;30618 46129;46130;46131;46132;46133;46134;46135 46129 483 7 MCLFAGFQR ILDQTNVSAAAQRRKMCLFAGFQRKAVVVC AAQRRKMCLFAGFQRKAVVVCPKDEDYKQR K M C Q R K 1 1 0 0 1 1 0 1 0 0 1 0 1 2 0 0 0 0 0 0 0 0 9 0 1128.5209 Q96BA7;B3KX72;B4DLR3;Q00839;Q7Z4Q5 Q96BA7 490 498 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 2 9.4277E-05 114.72 4 0.35469 0.4713 18.84 3 Median 0.35469 0.4713 18.84 3 0 Median NaN NaN NaN 0 0 Median 37522000 29654000 7868800 37522000 29654000 7868800 0 0 0 8446 788 8635 30619;30620;30621;30622 46136;46137;46138;46139 46138 285 4 MCVQNCGPSFQSLIVK ______________________________ CVQNCGPSFQSLIVKKEFVKENLVKLLNPR - M C V K K 0 0 1 0 2 2 0 1 0 1 1 1 1 1 1 2 0 0 0 2 0 0 16 0 1866.879 I3L1Q1;I3NI44;B4DUW5;B4E1M9 I3L1Q1 1 16 TOM1L1 yes no 2 0.01686 68.132 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8447 861 8636 30623 46140 46140 302 1 MDAILTEAIK RAQKQTPMASSPRPKMDAILTEAIKACFQK SPRPKMDAILTEAIKACFQKSGASVVAIRK K M D I K A 2 0 0 1 0 0 1 0 0 2 1 1 1 0 0 0 1 0 0 0 0 0 10 0 1103.5896 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 161 170 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.0068643 88.177 3 4 0.42504 0.59195 10.507 6 Median 0.4518 0.58144 6.2525 2 0 Median 0.44105 0.70317 13.053 4 0 Linear 105470000 72301000 33172000 17183000 10404000 6778500 88290000 61897000 26393000 8448 1565 8637;8638 30624;30625;30626;30627;30628;30629;30630 46141;46142;46143;46144;46145;46146;46147;46148;46149;46150 46144 712 10 MDCQECPEGYR AGALSVTIDGPSKVKMDCQECPEGYRVTYT SKVKMDCQECPEGYRVTYTPMAPGSYLISI K M D Y R V 0 1 0 1 2 1 2 1 0 0 0 0 1 0 1 0 0 0 1 0 0 0 11 0 1443.5217 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;Q86TQ3 P21333 2474 2484 FLNA;FLJ00119 Filamin-A yes no 2 0.0030447 108.43 3 0.9221 1.2442 16.277 2 Median 0.9221 1.2442 16.277 2 0 Median NaN NaN NaN 0 0 Median 5259600 3069500 2190200 5259600 3069500 2190200 0 0 0 8449 1287 8639 30631;30632;30633 46151;46152;46153;46154;46155 46153 5 MDLNSEQAEQLER LSKVQKNHVGKPLLKMDLNSEQAEQLERIN LKMDLNSEQAEQLERINDALSCEYECRRRM K M D E R I 1 1 1 1 0 2 3 0 0 0 2 0 1 0 0 1 0 0 0 0 0 0 13 0 1561.7042 Q52LJ0 Q52LJ0 197 209 FAM98B Protein FAM98B yes yes 2 0.00046139 93.345 2 0.63283 0.85595 NaN 1 Median 0.63283 0.85595 NaN 1 0 Median NaN NaN NaN 0 0 Median 3354900 2271300 1083600 3354900 2271300 1083600 0 0 0 8450 1537 8640 30634;30635 46156;46157;46158 46158 707 3 MDMSLDDIIK ______________________________ AMADKMDMSLDDIIKLNRSQRGGRGGGRGR K M D I K L 0 0 0 3 0 0 0 0 0 2 1 1 2 0 0 1 0 0 0 0 0 0 10 0 1179.5515 E9PB61;Q86V81 E9PB61 12 21 ALYREF THO complex subunit 4 yes no 2 0.0013473 72.325 2 0.14849 0.23466 5.2399 2 Median NaN NaN NaN 0 0 Median 0.14849 0.23466 5.2399 2 0 Median 67566000 57701000 9864400 0 0 0 67566000 57701000 9864400 8451 1021 8641 30636;30637 46159;46160;46161;46162 46159 368;369 4 MDQAIIFCR ILKGEYAVRAIKEHKMDQAIIFCRTKIDCD AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQ K M D C R T 1 1 0 1 1 1 0 0 0 2 0 0 1 1 0 0 0 0 0 0 0 0 9 0 1152.542 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 425 433 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.044533 58.981 1 0.56065 0.79205 NaN 1 Median 0.56065 0.79205 NaN 1 0 Median NaN NaN NaN 0 0 Median 1450300 912610 537640 1450300 912610 537640 0 0 0 8452 378 8642 30638 46163 46163 1 MDQGNYTSVLEFSDDIVK QDDQQPLDLEGVKRKMDQGNYTSVLEFSDD GNYTSVLEFSDDIVKIIQAAINSDGGQPEI K M D V K I 0 0 1 3 0 1 1 1 0 1 1 1 1 1 0 2 1 0 1 2 0 0 18 0 2059.9408 Q03164 Q03164 1715 1732 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 0.0066531 42.789 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2068300 2068300 0 2068300 2068300 0 0 0 0 8453 1438 8643 30639 46164 46164 645 1 MDSFDEDLARPSGLLAQER KSSFSITREAQVNVRMDSFDEDLARPSGLL DEDLARPSGLLAQERKLCRDLVHSNKKEQE R M D E R K 2 2 0 3 0 1 2 1 0 0 3 0 1 1 1 2 0 0 0 0 0 0 19 1 2149.011 Q9Y2W1 Q9Y2W1 573 591 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 3 4.01E-07 69.485 6 0.5574 0.75604 12.517 4 Median 0.5574 0.75604 12.517 4 0 Median NaN NaN NaN 0 0 Median 46153000 27707000 18446000 46153000 27707000 18446000 0 0 0 8454 1809 8644;8645 30640;30641;30642;30643;30644;30645 46165;46166;46167;46168;46169;46170;46171;46172 46166 835 8 MDTDLETMDLDQGGEALAPR IREERSRRERVRQSRMDTDLETMDLDQGGE ETMDLDQGGEALAPRQVLDLEDLVFTQGSH R M D P R Q 2 1 0 4 0 1 2 2 0 0 3 0 2 0 1 0 2 0 0 0 0 0 20 0 2176.9616 O75643;A4FU77;Q9H8B9 O75643 387 406 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 3.6201E-08 69.261 2 1.075 1.5404 2.845 2 Median NaN NaN NaN 0 0 Median 1.075 1.5404 2.845 2 0 Median 25065000 11467000 13598000 0 0 0 25065000 11467000 13598000 8455 1206 8646 30646;30647 46173;46174;46175;46176 46174 440;441 4 MDVAQSELDIYLSR ELMGFSKSVNEARSKMDVAQSELDIYLSRH KMDVAQSELDIYLSRHNTAVSQLTKAKEAL K M D S R H 1 1 0 2 0 1 1 0 0 1 2 0 1 0 0 2 0 0 1 1 0 0 14 0 1638.7923 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 499 512 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 5.9362E-50 224.25 5 4 0.67462 0.9386 10.776 9 Median 0.67675 0.92185 8.0199 5 0 Median 0.62399 1.0106 14.257 4 0 Median 378170000 224100000 154060000 134730000 73209000 61517000 243440000 150890000 92547000 8456 1760 8647;8648 30648;30649;30650;30651;30652;30653;30654;30655;30656 46177;46178;46179;46180;46181;46182;46183;46184;46185;46186;46187;46188;46189;46190;46191;46192 46177 810 15 MEDLLTLEYVKAEK ______________________________ ______________________________ - M E E K N 1 0 0 1 0 0 3 0 0 0 3 2 1 0 0 0 1 0 1 1 0 0 14 1 1680.8644 B3KW31 B3KW31 1 14 yes yes 2 0.0047683 79.23 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1216600 1216600 0 1216600 1216600 0 0 0 0 8457 783 8649 30657 46193 46193 284 1 MEDLTNPEDIR PLTWQTSHPYILADRMEDLTNPEDIRTNIK LADRMEDLTNPEDIRTNIKCDRKVSLYGYL R M E I R T 0 1 1 2 0 0 2 0 0 1 1 0 1 0 1 0 1 0 0 0 0 0 11 0 1331.6027 Q14692 Q14692 261 271 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 8.402E-05 94.409 1 2 0.76152 1.1377 3.4434 2 Median NaN NaN NaN 0 0 Median 0.76152 1.1377 3.4434 2 0 Median 32558000 17627000 14931000 0 0 0 32558000 17627000 14931000 8458 1495 8650 30658;30659;30660 46194;46195;46196;46197 46197 674 4 MEDSEALGFEHMGLDPR ______________________________ DSEALGFEHMGLDPRLLQAVTDLGWSRPTL - M E P R L 1 1 0 2 0 0 3 2 1 0 2 0 2 1 1 1 0 0 0 0 0 0 17 0 1932.8346 Q9NY93;Q53HB9;G3V0G3;F8WDT8;F8WEI3 Q9NY93 1 17 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 2.9362E-06 66.498 2 0.75999 1.1784 6.8501 2 Median NaN NaN NaN 0 0 Median 0.75999 1.1784 6.8501 2 0 Median 45249000 26343000 18906000 0 0 0 45249000 26343000 18906000 8459 1768 8651 30661;30662 46198;46199 46198 820;821 2 MEDSVGCLETAEEVK QIATLHAQVADMKKKMEDSVGCLETAEEVK MEDSVGCLETAEEVKRKLQKDLEGLSQRHE K M E V K R 1 0 0 1 1 0 4 1 0 0 1 1 1 0 0 1 1 0 0 2 0 0 15 0 1695.7332 A0A024R1N1;P35579;A0A0U4BW16 A0A024R1N1 1373 1387 MYH9 Myosin-9 no no 2 4.2748E-11 113.24 3 1.0011 1.2855 32.117 3 Plateau 1.0011 1.2855 32.117 3 0 Plateau NaN NaN NaN 0 0 Median 8842900 4443200 4399700 8842900 4443200 4399700 0 0 0 8460 61;490 8652 30663;30664;30665 46200;46201;46202;46203;46204;46205;46206;46207 46207 25 8 MEEIEGFR SGENRGPILLPYQFRMEEIEGFRYRCRDAM LLPYQFRMEEIEGFRYRCRDAMRSVTKQAI R M E F R Y 0 1 0 0 0 0 3 1 0 1 0 0 1 1 0 0 0 0 0 0 0 0 8 0 1009.4539 Q9NY93;Q53HB9;H7C3E9;H7BZN7 Q9NY93 420 427 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 0.0052861 75.109 2 0.76838 1.09 5.4319 2 Median NaN NaN NaN 0 0 Median 0.76838 1.09 5.4319 2 0 Median 22684000 12992000 9691600 0 0 0 22684000 12992000 9691600 8461 1768 8653 30666;30667 46208;46209;46210 46210 822 3 MEELDISNVLVSEQFMK AILLILAIKRNPKSRMEELDISNVLVSEQF ELDISNVLVSEQFMKTLDGVYAVHPQLDVV R M E M K T 0 0 1 1 0 1 3 0 0 1 2 1 2 1 0 2 0 0 0 2 0 0 17 0 2010.9642 Q0VAA2 Q0VAA2 362 378 LRRC74A Leucine-rich repeat-containing protein 74A yes yes 3 0.014828 72.797 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4198200 0 4198200 4198200 0 4198200 0 0 0 8462 1454 8654 30668 46211 46211 658 1 MEEQTEILQNGFNPEEDK ESVFDYSINSVHDEKMEEQTEILQNGFNPE QTEILQNGFNPEEDKCNNCDQELNKKPQDE K M E D K C 0 0 2 1 0 2 5 1 0 1 1 1 1 1 1 0 1 0 0 0 0 0 18 0 2149.9474 Q9H8H0 Q9H8H0 539 556 NOL11 Nucleolar protein 11 yes yes 2 0.0097853 79.804 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8463 1743 8655 30669;30670 46212;46213 46213 795 2 MEFFTMPPRTWFMR ______________________________ ______________________________ - M E M R Q 0 2 0 0 0 0 1 0 0 0 0 0 3 3 2 0 2 1 0 0 0 0 14 1 1875.8623 B4DXP8 B4DXP8 1 14 Kinesin-like protein yes yes 2 0.014126 61.78 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 709340 709340 0 709340 709340 0 0 0 0 8464 870 8656 30671 46214 46214 304;305 1 MEHLAQLR KELLNFYAWQHRESKMEHLAQLRKKFEEDK WQHRESKMEHLAQLRKKFEEDKQRIELLRA K M E L R K 1 1 0 0 0 1 1 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 8 0 996.51748 Q9Y3A4;Q9NSQ0 Q9Y3A4 251 258 RRP7A;RRP7BP Ribosomal RNA-processing protein 7 homolog A;Putative ribosomal RNA-processing protein 7 homolog B yes no 3 0.033805 28.174 1 0.83774 1.1061 NaN 1 Median 0.83774 1.1061 NaN 1 0 Median NaN NaN NaN 0 0 Median 6658800 2839200 3819500 6658800 2839200 3819500 0 0 0 8465 1815 8657 30672 46215 46215 1 MELAGSNTTASSPAR VAAHASLNPALFSMKMELAGSNTTASSPAR MELAGSNTTASSPARARGRPRKTKPGSMQP K M E A R A 3 1 1 0 0 0 1 1 0 0 1 0 1 0 1 3 2 0 0 0 0 0 15 0 1491.6988 J3QK86;J3KPG5;F8VU39;Q9UIF9;A0A0C4DGI9 J3QK86 1141 1155 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 0.00015313 104.24 2 2 1.1374 1.491 21.536 2 Median NaN NaN NaN 0 0 Median 1.1374 1.491 21.536 2 0 Median 6736400 3949200 2787200 1102700 1102700 0 5633700 2846500 2787200 8466 1062 8658 30673;30674;30675;30676 46216;46217;46218;46219 46218 378 4 MESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEK EQSSSSVKKDETNVKMESEGGADDSAEEGD DRGDDQLELIKDDEKEAEEGEDDRDSANGG K M E E K E 2 1 1 12 0 1 7 4 0 1 4 2 1 0 0 2 0 0 0 0 0 0 38 2 4196.7095 B2R5W2;G3V4C1;B3KX96;B2R603;G3V2Q1;P07910;G3V2D6;D3DPI2;Q569J8 B2R5W2 238 275 HNRNPC;hCG_1641229;HNRPC Heterogeneous nuclear ribonucleoproteins C1/C2 no no 4 2.7514E-17 91.213 3 0.43145 0.52285 NaN 1 Median 0.43145 0.52285 NaN 1 0 Median NaN NaN NaN 0 0 Median 35587000 28019000 7568700 35587000 28019000 7568700 0 0 0 8467 694 8659 30677;30678;30679 46220;46221;46222;46223;46224;46225;46226 46220 7 METEADAPSPAPSLGER NQEEKPEKNSRIGEKMETEADAPSPAPSLG TEADAPSPAPSLGERLEPRKIPLEDEVPGV K M E E R L 3 1 0 1 0 0 3 1 0 0 1 0 1 0 3 2 1 0 0 0 0 0 17 0 1756.7938 Q12873;B4DLC6;B4DKV1;Q2TAZ1;B3KWV4 Q12873 1593 1609 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 2 0.00031664 47.712 1 0.36226 0.47425 NaN 1 Median NaN NaN NaN 0 0 Median 0.36226 0.47425 NaN 1 0 Median 5287600 3615000 1672600 0 0 0 5287600 3615000 1672600 8468 1458 8660 30680 46227;46228 46228 660 2 MFAPTK RSGQGAFGNMCRGGRMFAPTKTWRRWHRRV FGNMCRGGRMFAPTKTWRRWHRRVNTTQKR R M F T K T 1 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 1 0 0 0 0 0 6 0 693.35198 P36578;Q59GY2;B4DFI6;H3BM89;B4DMJ6;Q53G74;H3BTP7;H3BU31;B4DP82 P36578 101 106 RPL4 60S ribosomal protein L4 yes no 2 0.035424 91.584 1 0.74557 0.9105 NaN 1 Median 0.74557 0.9105 NaN 1 0 Median NaN NaN NaN 0 0 Median 31217000 18786000 12431000 31217000 18786000 12431000 0 0 0 8469 1325 8661 30681 46229 46229 1 MFASLFPHNPQFIGR ILNNFTTRLGHSIGRMFASLFPHNPQFIGR MFASLFPHNPQFIGRQVATFHNQRDYIFFR R M F G R Q 1 1 1 0 0 1 0 1 1 1 1 0 1 3 2 1 0 0 0 0 0 0 15 0 1760.8821 Q9H9Y2 Q9H9Y2 262 276 RPF1 Ribosome production factor 1 yes yes 3 0.0011829 84.365 3 0.88746 1.2435 3.7945 2 Median 0.88746 1.2435 3.7945 2 0 Median NaN NaN NaN 0 0 Median 4947500 2501500 2446000 4947500 2501500 2446000 0 0 0 8470 1747 8662;8663 30682;30683;30684 46230;46231;46232 46230 796 3 MFGGPGTASRPSSSR ______________________________ MFGGPGTASRPSSSRSYVTTSTRTYSLGSA R M F S R S 1 2 0 0 0 0 0 3 0 0 0 0 1 1 2 4 1 0 0 0 0 0 15 1 1493.7045 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;A0A1B0GUA0;A0A1B0GTT5;A0A1B0GVG8;A0A0S2Z4T0 V9HWE1 14 28 HEL113;VIM Vimentin yes no 3 2.0345E-08 94.728 3 0.68897 0.931 4.635 2 Median 0.68897 0.931 4.635 2 0 Median NaN NaN NaN 0 0 Median 67929000 45681000 22248000 67929000 45681000 22248000 0 0 0 8471 1245 8664;8665 30685;30686;30687 46233;46234;46235;46236 46235 491 4 MFLQYYLNEQGDR ______________________________ ______________________________ - M F D R V 0 1 1 1 0 2 1 1 0 0 2 0 1 1 0 0 0 0 2 0 0 0 13 0 1675.7664 Q9NPE3;H0YM60 Q9NPE3 1 13 NOP10 H/ACA ribonucleoprotein complex subunit 3 yes no 2 6.6744E-11 152.62 4 0.71054 0.95478 11.338 4 Median 0.71054 0.95478 11.338 4 0 Median NaN NaN NaN 0 0 Median 31427000 18843000 12584000 31427000 18843000 12584000 0 0 0 8472 1751 8666 30688;30689;30690;30691 46237;46238;46239;46240;46241;46242;46243;46244 46240 797 8 MFLSFPTTK VGGHAAEYGAEALERMFLSFPTTKTYFPHF AEALERMFLSFPTTKTYFPHFDLSHGSAQV R M F T K T 0 0 0 0 0 0 0 0 0 0 1 1 1 2 1 1 2 0 0 0 0 0 9 0 1070.5471 CON__P01966;U3PXP0;Q96T46;U6A216;Q9BX83;Q4ZGM8;E9M4D4;G3V1N2;I1VZV6;D1MGQ2;A0A0K2BMD8;A0A1K0GXZ1;A0A1S5UZ39;P69905 CON__P01966 33 41 HBA2;HBA1 Hemoglobin subunit alpha yes no 2 0.0013399 123.98 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11489000 11489000 0 11489000 11489000 0 0 0 0 + 8473 948 8667;8668 30692;30693;30694 46245;46246;46247 46245 323 3 MFQLPVNNLGSLRK ______________________________ ______________________________ - M F R K A 0 1 2 0 0 1 0 1 0 0 3 1 1 1 1 1 0 0 0 1 0 0 14 1 1615.8868 Q6DHZ8;B2RBM8;Q9H2P0;E9PQK8 Q6DHZ8 1 14 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 7.8739E-05 60.49 1 0.98663 1.5218 NaN 1 Median NaN NaN NaN 0 0 Median 0.98663 1.5218 NaN 1 0 Median 10178000 5310500 4867800 0 0 0 10178000 5310500 4867800 8474 729 8669 30695 46248 46248 252 1 MFVLDEADEMLSR FDMLNRRYLSPKYIKMFVLDEADEMLSRGF IKMFVLDEADEMLSRGFKDQIYDIFQKLNS K M F S R G 1 1 0 2 0 0 2 0 0 0 2 0 2 1 0 1 0 0 0 1 0 0 13 0 1554.7058 A8K7F6;P60842;A8K088;J3KT12;J3KTB5;Q59F68;J3QS69;B4DNH2;J3QR64;J3QL43;J3QLN6;J3KSZ0;E7EQG2;Q14240;J3KTN0;B4DKP9;Q9NZE6;B4DJX6 A8K7F6 178 190 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 2 0.0045984 61.353 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8475 634 8670 30696 46249 46249 217 1 MGAGMGFGLER RMGQTMERIGSGVERMGAGMGFGLERMAAP GVERMGAGMGFGLERMAAPIDRVGQTIERM R M G E R M 1 1 0 0 0 0 1 4 0 0 1 0 2 1 0 0 0 0 0 0 0 0 11 0 1124.5107 P52272;A0A087X0X3;Q59ES8;Q7KYM9;Q6P2D7;M0R2I7;M0QZM1 P52272 486 496 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M no no 2 0.0057795 50.108 2 2.1788 3.1589 3.3727 2 Median NaN NaN NaN 0 0 Median 2.1788 3.1589 3.3727 2 0 Median 26161000 8146400 18015000 0 0 0 26161000 8146400 18015000 8476 1363;1160 8671 30697;30698 46250;46251 46251 416;417 2 MGGEEAEIR HVALLSVFQAWDDARMGGEEAEIRFCEHKR AWDDARMGGEEAEIRFCEHKRLNMATLRMT R M G I R F 1 1 0 0 0 0 3 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 9 0 990.44404 Q08211;B3KU66 Q08211 930 938 DHX9 ATP-dependent RNA helicase A yes no 2 0.013441 58.23 1 0.78585 1.0577 NaN 1 Median 0.78585 1.0577 NaN 1 0 Median NaN NaN NaN 0 0 Median 7749600 4191700 3557900 7749600 4191700 3557900 0 0 0 8477 1448 8672 30699 46252 46252 1 MGHAGAIIAGGK VVSFIAGLTAPPGRRMGHAGAIIAGGKGGA GRRMGHAGAIIAGGKGGAKEKISALQSAGV R M G G K G 3 0 0 0 0 0 0 4 1 2 0 1 1 0 0 0 0 0 0 0 0 0 12 0 1081.5702 Q6IAL5;B2R8A1;A8K4W7;P53597 Q6IAL5 284 295 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes no 2 0.013393 51.066 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 830110 0 830110 0 0 0 830110 0 830110 8478 610 8673 30700 46253 46253 207 1 MGHSAPLTNIR IFDGPTGEGRLLRFRMGHSAPLTNIRYYGQ LRFRMGHSAPLTNIRYYGQNGQQILSASQD R M G I R Y 1 1 1 0 0 0 0 1 1 1 1 0 1 0 1 1 1 0 0 0 0 0 11 0 1195.6132 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 320 330 WDR36 WD repeat-containing protein 36 yes no 2;3 0.0022482 56.563 2 0.62008 0.89149 8.0878 2 Median NaN NaN NaN 0 0 Median 0.62008 0.89149 8.0878 2 0 Median 25316000 15172000 10144000 0 0 0 25316000 15172000 10144000 8479 404 8674 30701;30702 46254;46255 46254 127 2 MGIYYIPVLGPAPR YPNSGMLLTANETPKMGIYYIPVLGPAPRW KMGIYYIPVLGPAPRWCSFLDNLTEELEEN K M G P R W 1 1 0 0 0 0 0 2 0 2 1 0 1 0 3 0 0 0 2 1 0 0 14 0 1545.8378 Q9BSC4;B4DS83 Q9BSC4 336 349 NOL10 Nucleolar protein 10 yes no 2 3.6958E-05 99.688 6 2 0.79081 1.1095 9.3228 7 Median 0.82553 1.1139 10.064 5 0 Median 0.67596 1.0539 2.2863 2 0 Median 98660000 59834000 38826000 47347000 27556000 19790000 51314000 32278000 19036000 8480 1710 8675;8676 30703;30704;30705;30706;30707;30708;30709;30710 46256;46257;46258;46259;46260;46261;46262;46263;46264 46259 774 9 MGLAISLVATEK QNYVHRIGRVGRAERMGLAISLVATEKEKV AERMGLAISLVATEKEKVWYHVCSSRGKGC R M G E K E 2 0 0 0 0 0 1 1 0 1 2 1 1 0 0 1 1 0 0 1 0 0 12 0 1231.6846 F1T0B3;A0A087X2G1;A3RJH1;Q92499 F1T0B3 531 542 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.015781 48.981 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6345400 6345400 0 0 0 0 6345400 6345400 0 8481 378 8677 30711;30712 46265;46266 46265 123 2 MGLAMGGGGGASFDR MGPAMGPALGAGIERMGLAMGGGGGASFDR MGLAMGGGGGASFDRAIEMERGNFGGSFAG R M G D R A 2 1 0 1 0 0 0 6 0 0 1 0 2 1 0 1 0 0 0 0 0 0 15 0 1382.6071 P52272;A0A087X0X3;Q59ES8;Q7KYM9;Q6P2D7;M0R2I7;M0QY96 P52272 607 621 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M yes no 2 1.3468E-05 72.089 2 2.0819 3.2412 0.43747 2 Median NaN NaN NaN 0 0 Median 2.0819 3.2412 0.43747 2 0 Median 47840000 15948000 31892000 0 0 0 47840000 15948000 31892000 8482 1363 8678 30713;30714 46267;46268;46269 46268 591;592 3 MGLVDQLVEPLGPGLKPPEER MMLTGRSIRADRAKKMGLVDQLVEPLGPGL LVEPLGPGLKPPEERTIEYLEEVAITFAKG K M G E R T 0 1 0 1 0 1 3 3 0 0 4 1 1 0 4 0 0 0 0 2 0 0 21 1 2273.209 B4DDZ5;E9KL44;P40939;B4DRH6 E9KL44 215 235 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase no no 3 5.1753E-08 76.068 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15469000 15469000 0 5312300 5312300 0 10156000 10156000 0 8483 1020;797 8679 30715;30716 46270;46271 46271 287 2 MGPAMGPALGAGIER ERMGLERMGANSLERMGPAMGPALGAGIER MGPAMGPALGAGIERMGLAMGGGGGASFDR R M G E R M 3 1 0 0 0 0 1 4 0 1 1 0 2 0 2 0 0 0 0 0 0 0 15 0 1426.7061 P52272;A0A087X0X3;Q59ES8;Q7KYM9;Q6P2D7;M0R2I7;M0QY96;M0QZM1 P52272 592 606 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M no no 2 2.5896E-05 84.169 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18845000 0 18845000 0 0 0 18845000 0 18845000 8484 1363;1160 8680 30717 46272 46272 418;419 1 MGPLGLDHMASSIER DRMGSVERMGSGIERMGPLGLDHMASSIER MGPLGLDHMASSIERMGQTMERIGSGVERM R M G E R M 1 1 0 1 0 0 1 2 1 1 2 0 2 0 1 2 0 0 0 0 0 0 15 0 1612.7701 P52272;A0A087X0X3;Q59ES8;Q7KYM9;Q6P2D7;M0QZM1 P52272 457 471 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M no no 3 0.016162 47.548 1 2.2246 3.2531 NaN 1 Median NaN NaN NaN 0 0 Median 2.2246 3.2531 NaN 1 0 Median 13100000 4148300 8951700 0 0 0 13100000 4148300 8951700 8485 1363;1160 8681 30718 46273 46273 420;421 1 MGSSLVIEISEEEVNK SGTMTGGGSKVMKGRMGSSLVIEISEEEVN GSSLVIEISEEEVNKMESQLQNDSKKAMQI R M G N K M 0 0 1 0 0 0 4 1 0 2 1 1 1 0 0 3 0 0 0 2 0 0 16 0 1762.8659 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 763 778 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 2.3689E-60 225.97 4 1 0.61314 0.8028 11.532 5 Median 0.66939 0.8536 12.869 4 0 Median 0.5025 0.78463 NaN 1 0 Median 71358000 43249000 28110000 36814000 21045000 15769000 34545000 22203000 12341000 8486 1760 8682;8683 30719;30720;30721;30722;30723 46274;46275;46276;46277;46278;46279;46280;46281;46282 46275 811 9 MGVPYCIIK DPIELVVFLPALCRKMGVPYCIIKGKARLG PALCRKMGVPYCIIKGKARLGRLVHRKTCT K M G I K G 0 0 0 0 1 0 0 1 0 2 0 1 1 0 1 0 0 0 1 1 0 0 9 0 1079.5508 P62424;Q9BY74;Q5T8U2 P62424 177 185 RPL7A;RP-L7a 60S ribosomal protein L7a yes no 2 0.0071243 78.616 8 0.74409 0.91114 4.5846 8 Median 0.74409 0.91114 4.5846 8 0 Median NaN NaN NaN 0 0 Median 203520000 115150000 88371000 203520000 115150000 88371000 0 0 0 8487 1411 8684;8685 30724;30725;30726;30727;30728;30729;30730;30731 46283;46284;46285;46286;46287;46288;46289;46290;46291;46292 46290 618 10 MGYQCTFGVLQAGQYGVAQTR KRSMVLKLTLRCLVRMGYQCTFGVLQAGQY FGVLQAGQYGVAQTRRRAIILAAAPGEKLP R M G T R R 2 1 0 0 1 4 0 4 0 0 1 0 1 1 0 0 2 0 2 2 0 0 21 0 2334.0885 A0A024R7E3;P26358;Q59FP7;B3KVA0;K7ENW7;I6L9H2 A0A024R7E3 1352 1372 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 no no 2 0.0031262 101.15 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8488 176;1129 8686 30732 46293 46293 79 1 MHDLNTDQENLVGTHDAPIR DPTHAWSGGLDHQLKMHDLNTDQENLVGTH TDQENLVGTHDAPIRCVEYCPEVNVMVTGS K M H I R C 1 1 2 3 0 1 1 1 2 1 2 0 1 0 1 0 2 0 0 1 0 0 20 0 2275.0651 J3QT28;A0A140VJF3;O43684;B4DDM6;J3QSX4 J3QT28 81 100 BUB3 Mitotic checkpoint protein BUB3 yes no 3 2.9081E-10 100.67 4 0.48716 0.68753 NaN 1 Median 0.48716 0.68753 NaN 1 0 Median NaN NaN NaN 0 0 Median 16086000 12997000 3089500 16086000 12997000 3089500 0 0 0 8489 494 8687 30733;30734;30735;30736 46294;46295;46296;46297;46298 46298 174 5 MIAGANFYIVGR LYAGPTEVQWHCRSRMIAGANFYIVGRDPA RSRMIAGANFYIVGRDPAGMPHPETKKDLY R M I G R D 2 1 1 0 0 0 0 2 0 2 0 0 1 1 0 0 0 0 1 1 0 0 12 0 1310.6805 Q5TB52;B4DWB5;O95340;Q9UIR2 Q5TB52 501 512 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes no 2 0.00064275 106.68 3 0.6852 0.94043 NaN 1 Median 0.6852 0.94043 NaN 1 0 Median NaN NaN NaN 0 0 Median 2707200 2110400 596800 2707200 2110400 596800 0 0 0 8490 865 8688 30737;30738;30739 46299;46300;46301;46302 46300 303 4 MIAGQVLDINLAAEPK NERNARAAVAGEDGRMIAGQVLDINLAAEP IAGQVLDINLAAEPKVNRGKAGVKRSAAEM R M I P K V 3 0 1 1 0 1 1 1 0 2 2 1 1 0 1 0 0 0 0 1 0 0 16 0 1681.9073 B2R5W2;G3V4C1;G3V4W0;B4DY08;B3KX96;B2R603;G3V2Q1;P07910;G3V576;A8K9A4;D3DPI2;G3V5X6;G3V3K6;G3V251;G3V555;G3V575;B4DMJ1;B4DSU6 B2R5W2 74 89 HNRNPC;hCG_1641229 Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 2 5.629E-30 174.73 9 3 0.63946 0.81259 29.655 11 Median 0.63229 0.79274 4.5076 8 0 Median 0.85603 1.3293 18.55 3 0 Median 873280000 494130000 379150000 356950000 219310000 137640000 516330000 274820000 241510000 8491 694 8689;8690 30740;30741;30742;30743;30744;30745;30746;30747;30748;30749;30750;30751 46303;46304;46305;46306;46307;46308;46309;46310;46311;46312;46313;46314;46315;46316;46317;46318;46319 46312 245 17 MIASDSHRPEVK REKSTFREESPLRIKMIASDSHRPEVKLKM RIKMIASDSHRPEVKLKMAPVPLDDSNRPA K M I V K L 1 1 0 1 0 0 1 0 1 1 0 1 1 0 1 2 0 0 0 1 0 0 12 1 1368.682 Q6DCA8;E9PK09;E9PQN2;E9PKI6;E9PK91;Q9NYF8;E9PJA7 Q6DCA8 537 548 BCLAF1 Bcl-2-associated transcription factor 1 yes no 3 0.00067323 67.93 2 0.51896 0.68354 14.956 2 Median 0.51896 0.68354 14.956 2 0 Median NaN NaN NaN 0 0 Median 6923300 4722300 2201000 6923300 4722300 2201000 0 0 0 8492 1036 8691 30752;30753 46320;46321 46321 371 2 MIFDVESMKK GTKSKLPKPVQDLIKMIFDVESMKKAMVEY QDLIKMIFDVESMKKAMVEYEIDLQKMPLG K M I K K A 0 0 0 1 0 0 1 0 0 1 0 2 2 1 0 1 0 0 0 1 0 0 10 1 1226.6039 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 675 684 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.00074181 68.224 4 0.33503 0.53209 1.6628 3 Median NaN NaN NaN 0 0 Median 0.33503 0.53209 1.6628 3 0 Median 91587000 71991000 19596000 0 0 0 91587000 71991000 19596000 8493 107 8692 30754;30755;30756;30757 46322;46323;46324;46325;46326 46323 65;66 5 MILRKMDKIK TRKHFLDYFDAVIPKMILRKMDKIKTFNIL AVIPKMILRKMDKIKTFNILNDFSPVEPNS K M I I K T 0 1 0 1 0 0 0 0 0 2 1 3 2 0 0 0 0 0 0 0 0 0 10 3 1274.7567 Q96DY7 Q96DY7 521 530 MTBP Mdm2-binding protein yes yes 2 0.023448 54.776 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 664310 452020 212290 664310 452020 212290 0 0 0 8494 1684 8693 30758 46327 46327 758;759 1 MINTDLSR KAASLKSNYNLPMHKMINTDLSRILKSPEI YNLPMHKMINTDLSRILKSPEIQRALRAPR K M I S R I 0 1 1 1 0 0 0 0 0 1 1 0 1 0 0 1 1 0 0 0 0 0 8 0 948.46987 P36578;Q59GY2;H3BM89;B4DMJ6;B4DMJ2 P36578 284 291 RPL4 60S ribosomal protein L4 yes no 2 0.0012237 113.41 11 6 0.73553 1.0005 15.925 17 Median 0.74468 1.0181 17.259 11 0 Median 0.59567 0.94895 14.099 6 0 Median 509530000 303340000 206190000 297800000 170080000 127720000 211740000 133260000 78477000 8495 1325 8694;8695 30759;30760;30761;30762;30763;30764;30765;30766;30767;30768;30769;30770;30771;30772;30773;30774;30775 46328;46329;46330;46331;46332;46333;46334;46335;46336;46337;46338;46339;46340;46341;46342;46343;46344;46345;46346;46347;46348;46349;46350;46351;46352;46353 46336 551 26 MKDTDSEEEIREAFR GTIDFPEFLTMMARKMKDTDSEEEIREAFR MKDTDSEEEIREAFRVFDKDGNGYISAAEL K M K F R V 1 2 0 2 0 0 4 0 0 1 0 1 1 1 0 1 1 0 0 0 0 0 15 2 1854.8418 Q9BRL5;P0DP25;P0DP24;P0DP23;B4DJ51;B2RDW0;H0Y7A7;E7ETZ0;E7EMB3;G3V361;Q96HY3;A8K1M2;G3V226 Q9BRL5 77 91 CALM3;CALM2;CALM1 yes no 3 0.0021119 71.879 3 0.85888 1.0337 10.941 3 Plateau 0.85888 1.0337 10.941 3 0 Plateau NaN NaN NaN 0 0 Median 39726000 20022000 19704000 39726000 20022000 19704000 0 0 0 8496 741 8696 30776;30777;30778 46354;46355;46356;46357;46358 46358 255 5 MKEEVPTALVEAHVR VASAAAKSALEEFSKMKEEVPTALVEAHVR MKEEVPTALVEAHVRKVEEAAKVTGKADPA K M K V R K 2 1 0 0 0 0 3 0 1 0 1 1 1 0 1 0 1 0 0 3 0 0 15 1 1707.8978 Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;B4DF22 Q59G16 738 752 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 3 6.139E-05 62.813 1 1.0603 1.6464 NaN 1 Median NaN NaN NaN 0 0 Median 1.0603 1.6464 NaN 1 0 Median 10877000 5141700 5735300 0 0 0 10877000 5141700 5735300 8497 257 8697 30779 46359 46359 105 1 MKLPEHPEGGEPEDDEAPAK KRRHSEVETDSKKKKMKLPEHPEGGEPEDD HPEGGEPEDDEAPAKGKFNWKGTIKAILKQ K M K A K G 2 0 0 2 0 0 5 2 1 0 1 2 1 0 4 0 0 0 0 0 0 0 20 1 2174.979 Q9NX58;A8K3Y5 Q9NX58 287 306 LYAR Cell growth-regulating nucleolar protein yes no 3 5.343E-16 130.95 3 1 0.83208 1.0525 7.2589 4 Median 0.96425 1.1913 8.8111 3 0 Plateau 0.65532 1.0582 NaN 1 0 Median 45694000 26012000 19682000 20392000 9677900 10714000 25302000 16334000 8968100 8498 1766 8698 30780;30781;30782;30783 46360;46361;46362;46363;46364;46365;46366 46361 816 7 MKVELCSFSGYK ______________________________ ______________________________ - M K Y K I 0 0 0 0 1 0 1 1 0 0 1 2 1 1 0 2 0 0 1 1 0 0 12 1 1447.684 C9JXB8;C9JNW5;V9HW01;P83731 C9JXB8 1 12 RPL24;HEL-S-310 60S ribosomal protein L24 yes no 2 7.1447E-12 164.81 6 0.98487 1.21 10.314 6 Median 0.98487 1.21 10.314 6 0 Median NaN NaN NaN 0 0 Median 101490000 51085000 50404000 101490000 51085000 50404000 0 0 0 8499 942 8699;8700 30784;30785;30786;30787;30788;30789 46367;46368;46369;46370;46371;46372;46373;46374 46368 320 6 MLAEREEALEEADELDR EQRKLREERHQEYLKMLAEREEALEEADEL AEREEALEEADELDRLVTAKTESVQYDHPN K M L D R L 3 2 0 2 0 0 6 0 0 0 3 0 1 0 0 0 0 0 0 0 0 0 17 1 2017.9262 B4DGP7;V9GYY5;B3KQ09;A0A024R1M6;Q9UGY1 B4DGP7 71 87 MGC3731;NOL12 Nucleolar protein 12 yes no 3 0.00030129 44.577 1 0.76281 1.0566 NaN 1 Median NaN NaN NaN 0 0 Median 0.76281 1.0566 NaN 1 0 Median 7774500 4427400 3347100 0 0 0 7774500 4427400 3347100 8500 60 8701 30790 46375 46375 14 1 MLAEREEALEEADELDRLVTAK EQRKLREERHQEYLKMLAEREEALEEADEL ALEEADELDRLVTAKTESVQYDHPNHTVTV K M L A K T 4 2 0 2 0 0 6 0 0 0 4 1 1 0 0 0 1 0 0 1 0 0 22 2 2530.2585 B4DGP7;V9GYY5;B3KQ09;A0A024R1M6;Q9UGY1 B4DGP7 71 92 MGC3731;NOL12 Nucleolar protein 12 yes no 3 8.9768E-12 72.316 2 0.72017 1.2294 5.2136 2 Median NaN NaN NaN 0 0 Median 0.72017 1.2294 5.2136 2 0 Median 50078000 30561000 19517000 0 0 0 50078000 30561000 19517000 8501 60 8702 30791;30792 46376;46377;46378;46379 46378 14 4 MLAIKR VLRLECVEPNCRSKRMLAIKRCKHFELGGD VEPNCRSKRMLAIKRCKHFELGGDKKRKGQ R M L K R C 1 1 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 6 1 730.45237 J3KQN4;Q969Q0;P83881;B2R4V2;H0Y5B4;H7BZ11;R4GN19;F5GYZ4 J3KQN4 118 123 RPL36A;RPL36AL;RPL36A-HNRNPH2;NLRP2 60S ribosomal protein L36a-like;60S ribosomal protein L36a yes no 2 0.051087 76.553 1 0.56263 0.87804 NaN 1 Median NaN NaN NaN 0 0 Median 0.56263 0.87804 NaN 1 0 Median 6605500 4279600 2326000 0 0 0 6605500 4279600 2326000 8502 1136 8703 30793 46380 46380 1 MLAIYDGFDGFAK AVRSAVRVGIADGHRMLAIYDGFDGFAKGQ HRMLAIYDGFDGFAKGQIKEIGWTDVGGWT R M L A K G 2 0 0 2 0 0 0 2 0 1 1 1 1 2 0 0 0 0 1 0 0 0 13 0 1446.6853 Q01813;B1APP6;O14943;Q8WTZ9;H0Y3Y3 Q01813 443 455 PFKP;PFK-P ATP-dependent 6-phosphofructokinase, platelet type yes no 2 0.0064721 72.096 1 2 0.60948 0.78298 NaN 1 Median 0.60948 0.78298 NaN 1 0 Median NaN NaN NaN 0 0 Median 11616000 2245400 9370600 3437700 2245400 1192300 8178300 0 8178300 8503 1434 8704 30794;30795;30796 46381;46382;46383 46381 639 3 MLATLEPEQR PTVEQQGEMARSGGRMLATLEPEQRAEIIH RSGGRMLATLEPEQRAEIIHHLADLLTDQR R M L Q R A 1 1 0 0 0 1 2 0 0 0 2 0 1 0 1 0 1 0 0 0 0 0 10 0 1186.6016 P54886 P54886 376 385 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.0026359 63.419 1 1.5322 2.052 NaN 1 Median NaN NaN NaN 0 0 Median 1.5322 2.052 NaN 1 0 Median 5186800 2028600 3158300 0 0 0 5186800 2028600 3158300 8504 1375 8705 30797 46384;46385 46384 597 2 MLDHEYTTK KLSPKAEEVATFFAKMLDHEYTTKEIFRKN ATFFAKMLDHEYTTKEIFRKNFFKDWRKEM K M L T K E 0 0 0 1 0 0 1 0 1 0 1 1 1 0 0 0 2 0 1 0 0 0 9 0 1136.5172 P11387;B9EG90;B7Z9E8;B4DYD2;E5KMK7;E5KMK6;E5KMK5;Q969P6;E5RIC7;D3DWJ7;E5RJ95;E5RFS0;E5RJ33;H0YBR3;H0YC03;E5RGE7;E5RGR4;E5RFE3;E5RGR2 P11387 263 271 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 2;3 1.7614E-05 138.4 5 3 0.76585 0.99246 16.447 7 Median 0.76508 0.93231 13.177 4 0 Median 0.82563 1.2335 15.669 3 0 Plateau 86689000 48207000 38482000 65960000 37072000 28888000 20728000 11134000 9594000 8505 1255 8706;8707 30798;30799;30800;30801;30802;30803;30804;30805 46386;46387;46388;46389;46390;46391;46392;46393;46394;46395;46396;46397 46389 502 12 MLDILAEYLK RERGNRVLIFSQMVRMLDILAEYLKYRQFP SQMVRMLDILAEYLKYRQFPFQRLDGSIKG R M L L K Y 1 0 0 1 0 0 1 0 0 1 3 1 1 0 0 0 0 0 1 0 0 0 10 0 1207.6522 O14646 O14646 816 825 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 2.0101E-05 102.61 6 2 0.54438 0.75859 25.397 6 Median 0.58653 0.75859 31.126 4 0 Median 0.50545 0.73059 14.782 2 0 Median 30869000 20441000 10428000 11130000 7612500 3517700 19739000 12829000 6910200 8506 1169 8708;8709 30806;30807;30808;30809;30810;30811;30812;30813 46398;46399;46400;46401;46402;46403;46404;46405;46406 46403 424 9 MLDILAEYLTIK RERGNRVLIFSQMVRMLDILAEYLTIKHYP MVRMLDILAEYLTIKHYPFQRLDGSIKGEI R M L I K H 1 0 0 1 0 0 1 0 0 2 3 1 1 0 0 0 1 0 1 0 0 0 12 0 1421.784 A0A024RC75;O14647;A0A1B0GTU9;A8K9Y5 A0A024RC75 819 830 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 2 6.2164E-11 143.96 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8507 289 8710 30814 46407 46407 113 1 MLDLLEDFLEHEGYK KEGGHRVLIFSQMTKMLDLLEDFLEHEGYK MLDLLEDFLEHEGYKYERIDGGITGNMRQE K M L Y K Y 0 0 0 2 0 0 3 1 1 0 4 1 1 1 0 0 0 0 1 0 0 0 15 0 1850.8761 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 1052 1066 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2;3 1.1307E-10 143.56 5 0.57401 0.70509 24.36 4 Median 0.57401 0.70509 24.36 4 0 Median NaN NaN NaN 0 0 Median 20032000 10176000 9856300 20032000 10176000 9856300 0 0 0 8508 428 8711;8712 30815;30816;30817;30818;30819 46408;46409;46410;46411;46412 46408 146 4 MLDMGFEPQIR NLRRTTYLVLDEADRMLDMGFEPQIRKIVD EADRMLDMGFEPQIRKIVDQIRPDRQTLMW R M L I R K 0 1 0 1 0 1 1 1 0 1 1 0 2 1 1 0 0 0 0 0 0 0 11 0 1335.6315 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1;A0A024R9A4;O15523;B4DLU5;B4E010;B4E132;Q59F66;Q92841;B4DZQ7;B4DN41;J3KTA4;B5BUE6;P17844;B4DNG2;Q7Z2V5;Q59E92;J3KRZ1;J3QSF1 B4DN41 242 252 DDX3X;DDX3Y;DDX17;DDX5;DKFZp686J01190 ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 no no 2 0.0038892 53.756 2 1.7171 2.4877 4.0238 2 Median NaN NaN NaN 0 0 Median 1.7171 2.4877 4.0238 2 0 Median 15075000 5547800 9527600 0 0 0 15075000 5547800 9527600 8509 833;1554;432 8713 30820;30821 46413;46414 46413 149;150 2 MLDNFDCFGDK YCVSQLPLTERGLRKMLDNFDCFGDKLSDE GLRKMLDNFDCFGDKLSDESIFSAFLSVVG K M L D K L 0 0 1 3 1 0 0 1 0 0 1 1 1 2 0 0 0 0 0 0 0 0 11 0 1360.5428 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1243 1253 NCAPD2 Condensin complex subunit 1 yes no 2 0.00088316 106.4 3 2 0.63547 0.82382 32.19 5 Median 0.77117 0.97628 8.8875 3 0 Plateau 0.34273 0.51251 4.824 2 0 Median 43108000 26246000 16862000 24408000 13670000 10738000 18700000 12576000 6123900 8510 757 8714 30822;30823;30824;30825;30826 46415;46416;46417;46418;46419;46420;46421;46422 46420 272 8 MLDPSSSEEESDEIVEEESGK ______________________________ SEEESDEIVEEESGKEVLGSAPSGARLSPS - M L G K E 0 0 0 2 0 0 7 1 0 1 1 1 1 0 1 5 0 0 0 1 0 0 21 0 2324.969 F1T0E5;Q9ULU8 F1T0E5 1 21 CADPS Calcium-dependent secretion activator 1 yes no 2 0.0052668 62.732 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 623950 623950 0 623950 623950 0 0 0 0 8511 1047 8715 30827;30828 46423;46424 46423 375 2 MLEPPPSAK AELNSTTEELHKYQKMLEPPPSAKPFTIDV LHKYQKMLEPPPSAKPFTIDVDKKLEEGQK K M L A K P 1 0 0 0 0 0 1 0 0 0 1 1 1 0 3 1 0 0 0 0 0 0 9 0 968.5001 O95235 O95235 716 724 KIF20A Kinesin-like protein KIF20A yes yes 2 0.0025679 70.919 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1879900 0 1879900 0 0 0 1879900 0 1879900 8512 1215 8716 30829;30830 46425;46426 46425 451 2 MLGEALSK RQKIVQAEGEAEAAKMLGEALSKNPGYIKL GEAEAAKMLGEALSKNPGYIKLRKIRAAQN K M L S K N 1 0 0 0 0 0 1 1 0 0 2 1 1 0 0 1 0 0 0 0 0 0 8 0 847.44734 J3KPX7;Q99623;F5GY37;Q9BXV3 J3KPX7 237 244 PHB2 Prohibitin-2 yes no 2 0.012528 55.37 2 1 1.0156 1.3954 79.925 2 Median 0.63197 0.79299 NaN 1 0 Median 1.632 2.4556 NaN 1 0 Median 36462000 22012000 14451000 23045000 16503000 6542900 13417000 5509500 7907600 8513 1133 8717 30831;30832;30833 46427;46428;46429;46430 46427 403 4 MLGLTVSLIQDAGR APDEETLIALLAHAKMLGLTVSLIQDAGRT KMLGLTVSLIQDAGRTQIAPGSQTVLGIGP K M L G R T 1 1 0 1 0 1 0 2 0 1 3 0 1 0 0 1 1 0 0 1 0 0 14 0 1472.8021 Q96ME4;J3KQ48;Q9Y3E5 Q96ME4 135 148 PTRH2 Peptidyl-tRNA hydrolase 2, mitochondrial yes no 2 0.00046789 55.314 1 0.6306 0.85159 NaN 1 Median 0.6306 0.85159 NaN 1 0 Median NaN NaN NaN 0 0 Median 3695700 2116200 1579500 3695700 2116200 1579500 0 0 0 8514 1134 8718 30834 46431 46431 405 1 MLIAMVDVIFADVAQPDQTR IIPVIEDARHPHKYRMLIAMVDVIFADVAQ VDVIFADVAQPDQTRIVALNAHTFLRNGGH R M L T R I 3 1 0 3 0 2 0 0 0 2 1 0 2 1 1 0 1 0 0 3 0 0 20 0 2232.1283 Q96BS4;P22087;M0R299;M0QXL5;M0R2Q4;B4DLD4;M0R0P1 Q96BS4 164 183 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2 0.0087393 48.608 1 0.93406 1.328 NaN 1 Median 0.93406 1.328 NaN 1 0 Median NaN NaN NaN 0 0 Median 1673600 1166400 507160 1673600 1166400 507160 0 0 0 8515 1288 8719 30835 46432 46432 540;541 1 MLIDFSYLLSK CILTMPQYMRQGYGKMLIDFSYLLSKVEEK GYGKMLIDFSYLLSKVEEKVGSPERPLSDL K M L S K V 0 0 0 1 0 0 0 0 0 1 3 1 1 1 0 2 0 0 1 0 0 0 11 0 1328.705 O95251;E7EUP3;B7Z4D9;B3KVJ2;B4DJ40;B4DG18;B4DGH8 O95251 489 499 KAT7 Histone acetyltransferase KAT7;Histone acetyltransferase yes no 2 0.0027094 98.048 4 0.72791 0.93343 19.794 3 Median 0.72791 0.93343 19.794 3 0 Median NaN NaN NaN 0 0 Median 6345000 3317600 3027500 6345000 3317600 3027500 0 0 0 8516 1217 8720;8721 30836;30837;30838;30839 46433;46434;46435;46436 46436 458 4 MLLQSSEGR TGSGKTICAEFAILRMLLQSSEGRCVYITP EFAILRMLLQSSEGRCVYITPMEALAEQVY R M L G R C 0 1 0 0 0 1 1 1 0 0 2 0 1 0 0 2 0 0 0 0 0 0 9 0 1019.507 O75643;A4FU77;B4E150 O75643 1367 1375 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0069939 59.35 1 0.86144 1.1271 NaN 1 Median NaN NaN NaN 0 0 Median 0.86144 1.1271 NaN 1 0 Median 3230200 1658700 1571500 0 0 0 3230200 1658700 1571500 8517 1206 8722 30840 46437;46438 46438 442 2 MLLSAGR DNSSVSSLCISPDGKMLLSAGRTIKLWVLE LCISPDGKMLLSAGRTIKLWVLETKEVYRH K M L G R T 1 1 0 0 0 0 0 1 0 0 2 0 1 0 0 1 0 0 0 0 0 0 7 0 746.41089 Q15061;C9IZK7;C9JEE7 Q15061 182 188 WDR43 WD repeat-containing protein 43 yes no 2 0.0099475 114.02 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5004300 5004300 0 0 0 0 5004300 5004300 0 8518 1505 8723;8724 30841;30842 46439;46440 46439 686 2 MLLSPGGVSQPLTASLAR SVSKDQPGRRSQMLRMLLSPGGVSQPLTAS SPGGVSQPLTASLARQRIVEEERERAVQAY R M L A R Q 2 1 0 0 0 1 0 2 0 0 4 0 1 0 2 3 1 0 0 1 0 0 18 0 1796.9819 I3L0U5;H6QX63;Q6PK04 I3L0U5 239 256 CCDC137 Coiled-coil domain-containing protein 137 yes no 2 7.7906E-13 101.43 6 2 1.0497 1.426 27.683 8 Median 1.1326 1.591 22.118 6 0 Median 0.67274 1.06 1.2958 2 0 Median 96249000 53081000 43168000 28288000 12995000 15293000 67961000 40085000 27876000 8519 1112 8725;8726 30843;30844;30845;30846;30847;30848;30849;30850 46441;46442;46443;46444;46445;46446;46447;46448;46449;46450;46451;46452 46449 393 12 MLPTIIADNAGYDSADLVAQLR GKEAVAMESYAKALRMLPTIIADNAGYDSA DNAGYDSADLVAQLRAAHSEGNTTAGLDMR R M L L R A 4 1 1 3 0 1 0 1 0 2 3 0 1 0 1 1 1 0 1 1 0 0 22 0 2346.1889 V9HW96;P78371;F5GWF6;B7Z4R3;Q9H369 V9HW96 445 466 HEL-S-100n;CCT2 T-complex protein 1 subunit beta yes no 2 2.4951E-06 59.898 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1912500 1912500 0 1912500 1912500 0 0 0 0 8520 1426 8727 30851 46453 46453 628 1 MLQGESAEAFVAK GRPENCGQIYWRAMKMLQGESAEAFVAKHA MKMLQGESAEAFVAKHAMHQTGHL______ K M L A K H 3 0 0 0 0 1 2 1 0 0 1 1 1 1 0 1 0 0 0 1 0 0 13 0 1379.6755 B3KQ21;Q9NYH9;B3KX32;Q9P1J8 B3KQ21 576 588 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 3.4676E-05 122.69 2 2 0.67066 1.0134 18.573 3 Median 0.96681 1.2821 NaN 1 0 Median 0.63615 0.94898 9.2895 2 0 Median 19962000 10844000 9118000 2825900 1531800 1294100 17136000 9312300 7823900 8521 768 8728 30852;30853;30854;30855 46454;46455;46456;46457 46454 281 3 MLQKPRNRGRSGGQAER ______________________________ QKPRNRGRSGGQAERDRDWSHSGNPGASRA - M L E R D 1 4 1 0 0 2 1 3 0 0 1 1 1 0 1 1 0 0 0 0 0 0 17 4 1940.0235 Q96MG7 Q96MG7 1 17 NDNL2 Melanoma-associated antigen G1 yes yes 2 0.048606 49.632 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3983700 0 3983700 3983700 0 3983700 0 0 0 8522 1694 8729 30856 46458 46458 1 MLQNVTPHNK ______________________________ ______________________________ - M L N K L 0 0 2 0 0 1 0 0 1 0 1 1 1 0 1 0 1 0 0 1 0 0 10 0 1180.6023 A0A024RCR5;A0A0G2JK44;P25440;A0A140T9V2;U3KQA6;A0A0G2JHL0;E9PIQ3;E9PKQ9 A0A024RCR5 1 10 BRD2 Bromodomain-containing protein 2 yes no 2 0.022937 55.064 1 0.41378 0.54955 NaN 1 Median NaN NaN NaN 0 0 Median 0.41378 0.54955 NaN 1 0 Median 3002500 2081800 920700 0 0 0 3002500 2081800 920700 8523 300 8730 30857 46459 46459 116 1 MLQTDPTARPTINELLNDEFFTSGYIPAR IPKHINPVAASLIQKMLQTDPTARPTINEL LLNDEFFTSGYIPARLPITCLTIPPRFSIA K M L A R L 2 2 2 2 0 1 2 1 0 2 3 0 1 2 3 1 4 0 1 0 0 0 29 1 3309.634 B2R841;P53350;B4E083;Q59GD0;D3DWF3;I3L2H5 B2R841 285 313 PLK1 Serine/threonine-protein kinase PLK;Serine/threonine-protein kinase PLK1 yes no 3 8.2896E-16 102.27 4 0.86387 1.1413 24.089 4 Median 0.86387 1.1413 24.089 4 0 Median NaN NaN NaN 0 0 Median 29624000 16299000 13325000 29624000 16299000 13325000 0 0 0 8524 714 8731;8732 30858;30859;30860;30861 46460;46461;46462;46463;46464 46461 248 5 MLSALLTGVNR CFFRTCVKKKDVESKMLSALLTGVNRAYPY VESKMLSALLTGVNRAYPYSQTGDDKVREQ K M L N R A 1 1 1 0 0 0 0 1 0 0 3 0 1 0 0 1 1 0 0 1 0 0 11 0 1173.654 B2R5U7;Q03701 B2R5U7 482 492 CEBPZ CCAAT/enhancer-binding protein zeta no no 2 0.0028448 76.827 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2853200 2853200 0 2853200 2853200 0 0 0 0 8525 693;1441 8733 30862 46465 46465 244 1 MLSLLVVDVGNPEEVR AWMECCCVSSGISERMLSLLVVDVGNPEEV LSLLVVDVGNPEEVRLFSKGFLVALVQVMP R M L V R L 0 1 1 1 0 0 2 1 0 0 3 0 1 0 1 1 0 0 0 4 0 0 16 0 1768.9393 Q9HBB9;Q8WUM5;Q9HC39;I3L2C7;P57678 Q9HBB9 821 836 GEMIN4 Gem-associated protein 4 yes no 2 0.0011722 113.61 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 530780 530780 0 530780 530780 0 0 0 0 8526 1667 8734 30863 46466;46467 46467 740 2 MLVLDEADEMLNK FDMIRRRSLRTRAIKMLVLDEADEMLNKGF IKMLVLDEADEMLNKGFKEQIYDVYRYLPP K M L N K G 1 0 1 2 0 0 2 0 0 0 3 1 2 0 0 0 0 0 0 1 0 0 13 0 1519.7262 A0A024R8W0;P38919 A0A024R8W0 183 195 DDX48;EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 0.0038541 42.743 1 2.7517 3.8646 NaN 1 Median NaN NaN NaN 0 0 Median 2.7517 3.8646 NaN 1 0 Median 4296100 1317800 2978300 0 0 0 4296100 1317800 2978300 8527 206 8735 30864 46468 46468 88;89 1 MLVTFDEELRPLPVSVR SHYVLYGLVAAMQPRMLVTFDEELRPLPVS VTFDEELRPLPVSVRVGQAVDVVGQAGKPK R M L V R V 0 2 0 1 0 0 2 0 0 0 3 0 1 1 2 1 1 0 0 3 0 0 17 1 2000.0765 Q59EG8;Q13200;B4DM22;Q13041 Q59EG8 834 850 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 3 0.01358 67.136 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4063800 4063800 0 4063800 4063800 0 0 0 0 8528 1465 8736 30865 46469 46469 662 1 MMAIAPNVTVMVGELVGAR ISEYRTQLYEYLQNRMMAIAPNVTVMVGEL APNVTVMVGELVGARLIAHAGSLLNLAKHA R M M A R L 3 1 1 0 0 0 1 2 0 1 1 0 3 0 1 0 1 0 0 4 0 0 19 0 1958.0151 Q9Y2X3;H7BZ72 Q9Y2X3 279 297 NOP58 Nucleolar protein 58 yes no 2 2.0804E-06 67.93 3 0.37085 0.61454 1.3273 3 Plateau NaN NaN NaN 0 0 Median 0.37085 0.61454 1.3273 3 0 Plateau 246990000 188930000 58062000 0 0 0 246990000 188930000 58062000 8529 1810 8737 30866;30867;30868 46470;46471;46472 46472 838;839;840 2 MMDSLFLK KTAEEENPEHVEIQKMMDSLFLKLDALSNF EHVEIQKMMDSLFLKLDALSNFHFIPKPPV K M M L K L 0 0 0 1 0 0 0 0 0 0 2 1 2 1 0 1 0 0 0 0 0 0 8 0 983.48201 B3KPV5;O00566 B3KPV5 499 506 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 2 0.027621 43.769 1 0.60099 0.89177 NaN 1 Median NaN NaN NaN 0 0 Median 0.60099 0.89177 NaN 1 0 Median 10835000 6390200 4444800 0 0 0 10835000 6390200 4444800 8530 767 8738 30869 46473 46473 1 MMGGAGPGSSLEAR GPPNPPGPSPKALAKMMGGAGPGSSLEARS KMMGGAGPGSSLEARSPSDLHISPLAKKLP K M M A R S 2 1 0 0 0 0 1 4 0 0 1 0 2 0 1 2 0 0 0 0 0 0 14 0 1319.5962 B9EGQ5;M0QXA7;B3KR89;O95785 B9EGQ5 294 307 WIZ Protein Wiz yes no 2 0.0019207 43.604 1 0.6624 0.84885 NaN 1 Median NaN NaN NaN 0 0 Median 0.6624 0.84885 NaN 1 0 Median 2045900 1200800 845040 0 0 0 2045900 1200800 845040 8531 929 8739 30870 46474 46474 317;318 1 MNCDKPRLIEALKTK SWGEGDDGKLGHFSRMNCDKPRLIEALKTK MNCDKPRLIEALKTKRIRDIACGSSHSAAL R M N T K R 1 1 1 1 1 0 1 0 0 1 2 3 1 0 1 0 1 0 0 0 0 0 15 3 1815.9699 A0A0J9YVP0;O95714;A8KAQ8 A0A0J9YVP0 332 346 HERC2 E3 ubiquitin-protein ligase HERC2 yes no 4 0.020811 61.409 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1104700 1104700 0 1104700 1104700 0 0 0 0 8532 441 8740 30871 46475 46475 154 1 MNCYALIR TLSGSDRNAHLNALKMNCYALIRLLESFET AHLNALKMNCYALIRLLESFETMASQTNLV K M N I R L 1 1 1 0 1 0 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 0 8 0 1039.4943 B3KMS0;Q15021;B4E0B7;A0PJ76 B3KMS0 119 126 NCAPD2 Condensin complex subunit 1 yes no 2 0.012893 68.915 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18243000 18243000 0 4349200 4349200 0 13894000 13894000 0 8533 757 8741 30872;30873;30874 46476;46477;46478 46477 273 3 MNDTVTIR ______________________________ ______________________________ - M N I R T 0 1 1 1 0 0 0 0 0 1 0 0 1 0 0 0 2 0 0 1 0 0 8 0 948.46987 E7ETK0;A0A087WUS0;P62847 E7ETK0 1 8 RPS24 40S ribosomal protein S24 yes no 1 0.00053842 124.23 1 0.92535 1.2973 NaN 1 Median 0.92535 1.2973 NaN 1 0 Median NaN NaN NaN 0 0 Median 4339100 2228400 2110700 4339100 2228400 2110700 0 0 0 8534 344 8742 30875 46479;46480 46480 2 MNEEISSDSESESLAPR ADSAGDRGKSKGGGKMNEEISSDSESESLA EEISSDSESESLAPRKPEEEEEEELEETAQ K M N P R K 1 1 1 1 0 0 4 0 0 1 1 0 1 0 1 5 0 0 0 0 0 0 17 0 1879.8106 O43818 O43818 45 61 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 6.255E-14 106.58 1 2 0.3347 0.47282 2.1066 2 Median NaN NaN NaN 0 0 Median 0.3347 0.47282 2.1066 2 0 Median 21370000 14651000 6718800 1354000 0 1354000 20016000 14651000 5364800 8535 1188 8743 30876;30877;30878 46481;46482;46483 46482 432 3 MNSGPPGLGGK PPSQGGKRKGGLGGKMNSGPPGLGGKRKGG LGGKMNSGPPGLGGKRKGGQRPGGKRRK__ K M N G K R 0 0 1 0 0 0 0 4 0 0 1 1 1 0 2 1 0 0 0 0 0 0 11 0 1013.4964 Q15050 Q15050 342 352 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 8.1875E-05 88.177 1 1 0.89189 1.2288 31.518 2 Median 1.2232 1.5356 NaN 1 0 Median 0.65033 0.98333 NaN 1 0 Median 22712000 12142000 10570000 7640000 3595500 4044600 15072000 8546800 6525100 8536 1503 8744 30879;30880 46484;46485;46486 46484 683 3 MNVEEDVQEEQSK LDKDDRRLLSYKDGKMNVEEDVQEEQSKEA GKMNVEEDVQEEQSKEASDPESNEEEGDSS K M N S K E 0 0 1 1 0 2 4 0 0 0 0 1 1 0 0 1 0 0 0 2 0 0 13 0 1563.6723 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 338 350 NOP14 Nucleolar protein 14 yes no 2 3.9249E-45 223.87 7 2 0.91443 1.1942 13.623 6 Median 0.98733 1.2577 16.138 4 0 Median 0.72824 1.16 0.90864 2 0 Median 102280000 54791000 47489000 26686000 10930000 15757000 75593000 43861000 31732000 8537 652 8745;8746 30881;30882;30883;30884;30885;30886;30887;30888;30889 46487;46488;46489;46490;46491;46492;46493;46494;46495;46496;46497;46498;46499;46500 46489 229 14 MNVLADALK ______________________________ ______________________________ R M N L K S 2 0 1 1 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 1 0 0 9 0 973.52665 B2R4W8;P62244;I3L3P7;A8K7H3;I3L246;H3BN98;H3BV27;H3BT37;I3L303 B2R4W8 4 12 hCG_1994130;RPS15A 40S ribosomal protein S15a yes no 2 0.00012711 115.7 10 4 0.84934 1.0894 40.851 8 Median 0.87663 1.1177 4.4914 5 0 Median 0.30197 0.48619 14.69 3 0 Median 525310000 258560000 266750000 353140000 128690000 224450000 172170000 129880000 42297000 8538 688 8747;8748 30890;30891;30892;30893;30894;30895;30896;30897;30898;30899;30900;30901;30902;30903 46501;46502;46503;46504;46505;46506;46507;46508;46509;46510;46511;46512;46513;46514;46515;46516;46517;46518;46519;46520;46521;46522;46523;46524;46525 46524 241 25 MPCQSLQPEPINTPTHTK DHAKAPKSEKGKITKMPCQSLQPEPINTPT QSLQPEPINTPTHTKQQLKASLGKVGVKEE K M P T K Q 0 0 1 0 1 2 1 0 1 1 1 1 1 0 4 1 3 0 0 0 0 0 18 0 2077.9925 P46013 P46013 1005 1022 MKI67 Antigen KI-67 yes yes 2;3 3.7183E-13 119.51 8 3 0.94363 1.1629 10.181 9 Median 0.95403 1.188 3.4192 7 0 Median 0.65443 0.95869 5.3844 2 0 Median 226670000 120280000 106390000 207560000 108500000 99059000 19115000 11786000 7328600 8539 1342 8749;8750 30904;30905;30906;30907;30908;30909;30910;30911;30912;30913;30914 46526;46527;46528;46529;46530;46531;46532;46533;46534;46535;46536;46537;46538;46539;46540;46541;46542 46533 576 17 MPGSVIPPPLVR NIPAGKPSLQTSSARMPGSVIPPPLVRGGQ SARMPGSVIPPPLVRGGQQASSKLGPQASS R M P V R G 0 1 0 0 0 0 0 1 0 1 1 0 1 0 4 1 0 0 0 2 0 0 12 0 1261.7217 A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7 A0A024R7K7 214 225 GATAD2A Transcriptional repressor p66-alpha yes no 2 0.033563 43.651 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2625400 2625400 0 0 0 0 2625400 2625400 0 8540 179 8751 30915 46543 46543 1 MPLHTIIPLLQELTK LQTRNVNLIKKTVLRMPLHTIIPLLQELTK MPLHTIIPLLQELTKRLQGHPNSAVLMVQW R M P T K R 0 0 0 0 0 1 1 0 1 2 4 1 1 0 2 0 2 0 0 0 0 0 15 0 1746.0114 Q15061 Q15061 497 511 WDR43 WD repeat-containing protein 43 yes yes 3 0.0036229 64.842 2 1.0197 1.2874 5.8725 2 Median 1.0197 1.2874 5.8725 2 0 Median NaN NaN NaN 0 0 Median 6140600 3148000 2992600 6140600 3148000 2992600 0 0 0 8541 1505 8752;8753 30916;30917 46544;46545;46546 46545 687 3 MQDTSVSFGYQLDLPK SDQLQVGVEFEASTRMQDTSVSFGYQLDLP QDTSVSFGYQLDLPKANLLFKGSVDSNWIV R M Q P K A 0 0 0 2 0 2 0 1 0 0 2 1 1 1 1 2 1 0 1 1 0 0 16 0 1827.8713 O96008;K7EKG4 O96008 294 309 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes no 2 3.018E-18 153.81 4 1 0.69179 0.8967 60.742 5 Median 0.69012 0.88279 20.335 4 0 Median 2.0162 3.0582 NaN 1 0 Median 33594000 17738000 15856000 20014000 12888000 7125800 13580000 4850000 8730200 8542 1226 8754;8755 30918;30919;30920;30921;30922 46547;46548;46549;46550;46551;46552;46553 46548 463 7 MQEVVANLQYDDGSGMK DGDLIESFLDISRPKMQEVVANLQYDDGSG EVVANLQYDDGSGMKREATADDLIKVVEEL K M Q M K R 1 0 1 2 0 2 1 2 0 0 1 1 2 0 0 1 0 0 1 2 0 0 17 0 1883.8393 Q16531;B4DSA8;B4DZP5 Q16531 1105 1121 DDB1 DNA damage-binding protein 1 yes no 2 2.7625E-05 58.831 2 0.78272 1.1661 4.3389 2 Median NaN NaN NaN 0 0 Median 0.78272 1.1661 4.3389 2 0 Median 16872000 9404700 7467300 0 0 0 16872000 9404700 7467300 8543 1520 8756 30923;30924 46554;46555 46555 699;700 2 MQEVVANLQYDDGSGMKR DGDLIESFLDISRPKMQEVVANLQYDDGSG VVANLQYDDGSGMKREATADDLIKVVEELT K M Q K R E 1 1 1 2 0 2 1 2 0 0 1 1 2 0 0 1 0 0 1 2 0 0 18 1 2039.9405 Q16531;B4DSA8;B4DZP5 Q16531 1105 1122 DDB1 DNA damage-binding protein 1 yes no 3 1.0167E-17 101.28 2 0.70215 1.2008 6.4046 2 Median NaN NaN NaN 0 0 Median 0.70215 1.2008 6.4046 2 0 Median 69460000 40564000 28896000 0 0 0 69460000 40564000 28896000 8544 1520 8757 30925;30926 46556;46557;46558 46556 699;700 3 MQGSLEAHVNGFR KLKDLYIRPNIAQKRMQGSLEAHVNGFRFT KRMQGSLEAHVNGFRFTSVRGDKVDILYNN R M Q F R F 1 1 1 0 0 1 1 2 1 0 1 0 1 1 0 1 0 0 0 1 0 0 13 0 1444.6881 Q9Y5B9 Q9Y5B9 676 688 SUPT16H FACT complex subunit SPT16 yes yes 2;3 0.0092988 73.666 2 0.63534 0.93421 16.074 2 Median NaN NaN NaN 0 0 Median 0.63534 0.93421 16.074 2 0 Median 27254000 15078000 12176000 0 0 0 27254000 15078000 12176000 8545 1829 8758 30927;30928 46559;46560 46559 857 0 MQHNLEQQIQAR GLAQQWDQLDQLGMRMQHNLEQQIQARNTT GMRMQHNLEQQIQARNTTGVTEEALKEFSM R M Q A R N 1 1 1 0 0 4 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 12 0 1494.7361 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16 Q13813 2304 2315 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 3 0.051797 42.475 1 0.93568 1.2381 NaN 1 Median 0.93568 1.2381 NaN 1 0 Median NaN NaN NaN 0 0 Median 3482000 1703400 1778600 3482000 1703400 1778600 0 0 0 8546 1476 8759 30929 46561 46561 1 MQIFVK ______________________________ ______________________________ - M Q V K T 0 0 0 0 0 1 0 0 0 1 0 1 1 1 0 0 0 0 0 1 0 0 6 0 764.42548 Q5RKT7;B2RDW1;P62979;J3QS39;J3QTR3;F5H6Q2;Q3MIH3;F5GYU3;F5H2Z3;F5H265;Q5UGI3;B4DV12;F5H388;F5H747;F5GXK7;J3QKN0;Q5U5U6;Q5PY61;Q96C32;Q96MH4;L8B4I8;L8B196;L8B4R0;A8K674;L8B4Z6;L8B4M0;L8B4J3;P62987;P0CG47;P0CG48;M0R1V7;Q49A90;J3QSA3;F5GZ39;A8CGI2 Q5RKT7 1 6 RPS27A;HEL112;UBB;UBC;UBA52;UbC Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 2 0.026712 101.33 4 1 0.76493 0.95098 11.094 5 Median 0.78214 0.98468 4.9813 4 0 Median 0.48523 0.78491 NaN 1 0 Median 188200000 111470000 76727000 142940000 80181000 62764000 45254000 31290000 13964000 8547 742 8760;8761 30930;30931;30932;30933;30934 46562;46563;46564;46565;46566;46567 46562 6 MQLPSAAGLHPTGHQSK KNELNRLRNLARAHKMQLPSAAGLHPTGHQ LPSAAGLHPTGHQSKEELGRAMQVAKVSTA K M Q S K E 2 0 0 0 0 2 0 2 2 0 2 1 1 0 2 2 1 0 0 0 0 0 17 0 1758.8835 Q15050 Q15050 199 215 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 3 9.7036E-05 50.831 1 0.77496 0.98421 NaN 1 Median 0.77496 0.98421 NaN 1 0 Median NaN NaN NaN 0 0 Median 13017000 7596400 5420500 13017000 7596400 5420500 0 0 0 8548 1503 8762 30935 46568 46568 684 1 MQLSAELQSDTEEILSK PHVKTNLLLQAHLSRMQLSAELQSDTEEIL LSAELQSDTEEILSKAIRLIQACVDVLSSN R M Q S K A 1 0 0 1 0 2 3 0 0 1 3 1 1 0 0 3 1 0 0 0 0 0 17 0 1920.935 O75643;A4FU77;B4E150;B4E0P5;Q9UNV9;A2RRQ7;Q7L5W4;Q9P172 O75643 1902 1918 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 1.3201E-18 132.97 5 0.59705 0.76126 8.6684 4 Median 0.59705 0.76126 8.6684 4 0 Median NaN NaN NaN 0 0 Median 17664000 11009000 6655300 17664000 11009000 6655300 0 0 0 8549 1206 8763;8764 30936;30937;30938;30939;30940 46569;46570;46571;46572;46573 46571 443 4 MQNDAGEFVDLYVPR ______________________________ MQNDAGEFVDLYVPRKCSASNRIIGAKDHA - M Q P R K 1 1 1 2 0 1 1 1 0 0 1 0 1 1 1 0 0 0 1 2 0 0 15 0 1752.8141 Q8WVC2;Q6FGH5;Q9BYK1;P63220;Q9BYK2;Q13666 Q8WVC2 1 15 RPS21 40S ribosomal protein S21 yes no 2 0.0062557 84.169 1 0.85173 1.1389 NaN 1 Median 0.85173 1.1389 NaN 1 0 Median NaN NaN NaN 0 0 Median 1217300 692210 525110 1217300 692210 525110 0 0 0 8550 1419 8765 30941 46574 46574 622 1 MQQENMKPQEQLTLEPYER STASAEAVFASEVKKMQQENMKPQEQLTLE NMKPQEQLTLEPYERDHAVVVGVYRPPPKV K M Q E R D 0 1 1 0 0 4 4 0 0 0 2 1 2 0 2 0 1 0 1 0 0 0 19 1 2391.1199 Q96BS4;P22087;M0R299;M0QXL5 Q96BS4 225 243 FBL rRNA 2-O-methyltransferase fibrillarin yes no 3 2.3993E-10 93.684 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 96979000 96979000 0 0 0 0 96979000 96979000 0 8551 1288 8766 30942 46575 46575 542;543 1 MQQLNAAHQEALMK TYMEFLWQYKSSADKMQQLNAAHQEALMKL KMQQLNAAHQEALMKLERLDSVPVEEQEEF K M Q M K L 3 0 1 0 0 3 1 0 1 0 2 1 2 0 0 0 0 0 0 0 0 0 14 0 1611.7861 Q9BZD4;A0A024R8Y0;E9PQC4;B1AQT4;E9PP32 Q9BZD4 152 165 NUF2;CDCA1 Kinetochore protein Nuf2 yes no 2 8.0423E-06 81.278 1 0.38765 0.53723 NaN 1 Median NaN NaN NaN 0 0 Median 0.38765 0.53723 NaN 1 0 Median 3737200 2596200 1141000 0 0 0 3737200 2596200 1141000 8552 1727 8767 30943 46576 46576 783;784 1 MQQNIQELEEQLEEEESAR EEEERCQHLQAEKKKMQQNIQELEEQLEEE IQELEEQLEEEESARQKLQLEKVTTEAKLK K M Q A R Q 1 1 1 0 0 4 7 0 0 1 2 0 1 0 0 1 0 0 0 0 0 0 19 0 2332.0489 A0A024R1N1;P35579;Q86XU5;Q99529;A0A0U4BW16 A0A024R1N1 941 959 MYH9 Myosin-9 no no 2 1.342E-98 258.09 9 1 0.89254 1.186 56.778 9 Median 0.8643 1.168 20.226 8 0 Median 3.6295 5.7536 NaN 1 0 Median 130800000 62109000 68692000 101670000 55742000 45932000 29127000 6367000 22759000 8553 61;490 8768;8769 30944;30945;30946;30947;30948;30949;30950;30951;30952;30953 46577;46578;46579;46580;46581;46582;46583;46584;46585;46586;46587;46588;46589;46590;46591;46592;46593;46594;46595 46580 26 19 MQQQLDEYQELLDIK LLAEKEREMAEMRARMQQQLDEYQELLDIK MQQQLDEYQELLDIKLALDMEIHAYRKLLE R M Q I K L 0 0 0 2 0 4 2 0 0 1 3 1 1 0 0 0 0 0 1 0 0 0 15 0 1892.919 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;Q5TCI8;B4DFR3 P02545 352 366 LMNA Prelamin-A/C;Lamin-A/C yes no 2 4.6763E-51 229.56 8 2 0.64633 0.81123 44.979 10 Median 0.63296 0.79559 7.6763 8 0 Median 1.42 2.2728 5.9142 2 0 Median 314870000 163460000 151410000 196790000 112060000 84735000 118080000 51402000 66679000 8554 1229 8770;8771 30954;30955;30956;30957;30958;30959;30960;30961;30962;30963 46596;46597;46598;46599;46600;46601;46602;46603;46604;46605;46606;46607;46608;46609;46610;46611;46612;46613 46596 471 18 MREDYDSVEQDGDEPGPQR RKGRGFGSEEGSRARMREDYDSVEQDGDEP YDSVEQDGDEPGPQRSVEGWILFVTGVHEE R M R Q R S 0 2 0 4 0 2 3 2 0 0 0 0 1 0 2 1 0 0 1 1 0 0 19 1 2221.9182 A0A023T787;Q9Y5S9 A0A023T787 50 68 RBM8;RBM8A RNA-binding protein 8A yes no 3 0.0025644 76.176 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1897200 1897200 0 1897200 1897200 0 0 0 0 8555 2 8772 30964 46614 46614 0 1 MREIVHLQAGQCGNQIGAK ______________________________ VHLQAGQCGNQIGAKFWEVISDEHGIDPTG - M R A K F 2 1 1 0 1 3 1 3 1 2 1 1 1 0 0 0 0 0 0 1 0 0 19 1 2109.0572 Q8IZ29;P68371;Q8N6N5;Q8IWP6;B4DFH6;M0R2D3;M0QY85;B4DNW1;M0R0X0;M0QY37;M0QX14;M0R042;M0QYM7;M0R2T4;P04350;B4DJ43 Q8IZ29 1 19 TUBB2C;TUBB4B;TUBB4A Tubulin beta-4B chain;Tubulin beta-4A chain no no 3 1.2379E-15 132.15 3 0.37964 0.51463 8.7303 3 Median 0.37964 0.51463 8.7303 3 0 Median NaN NaN NaN 0 0 Median 29864000 19988000 9875200 29864000 19988000 9875200 0 0 0 8556 1423;1230 8773 30965;30966;30967 46615;46616;46617;46618 46615 4 MRIESLSSQLSNLQK TSTVNSAREELMESRMRIESLSSQLSNLQK MRIESLSSQLSNLQKESRACLERIQELEDL R M R Q K E 0 1 1 0 0 2 1 0 0 1 3 1 1 0 0 4 0 0 0 0 0 0 15 1 1732.9142 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;B4DZT3 P20700 298 312 LMNB1 Lamin-B1 yes no 3 0.00055802 46.701 1 1 1.3453 1.899 53.38 2 Median 1.0306 1.302 NaN 1 0 Median 1.756 2.7698 NaN 1 0 Median 20445000 8211400 12233000 6706600 3201200 3505300 13738000 5010100 8728100 8557 1285 8774;8775 30968;30969 46619;46620 46620 537 2 MRPGAYSTGYGGYEEYSGLSDGYGFTTDLFGR ARRYIGIVKQAGLERMRPGAYSTGYGGYEE GLSDGYGFTTDLFGRDLSYCLSGMYDHRYG R M R G R D 1 2 0 2 0 0 2 8 0 0 2 0 1 2 1 3 3 0 5 0 0 0 32 1 3473.5147 A0A024R7T3;P52597;B4DKS8 A0A024R7T3 231 262 HNRPF;HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 3 7.486E-07 71.881 1 0.44681 0.61073 NaN 1 Median 0.44681 0.61073 NaN 1 0 Median NaN NaN NaN 0 0 Median 3448300 2325400 1122900 3448300 2325400 1122900 0 0 0 8558 184 8776 30970 46621 46621 83 1 MRPGVACSVSQAQK EIRNFLGEKYIRRVRMRPGVACSVSQAQKD RMRPGVACSVSQAQKDELILEGNDIELVSN R M R Q K D 2 1 0 0 1 2 0 1 0 0 0 1 1 0 1 2 0 0 0 2 0 0 14 1 1517.7443 Q53Z07;P32969;H0Y9V9;E7ESE0 Q53Z07 128 141 RPL9 60S ribosomal protein L9 yes no 2;3 8.4778E-21 168 15 2 0.65385 0.86404 12.87 14 Median 0.65642 0.86404 13.4 12 0 Median 0.54498 0.8403 12.845 2 0 Median 263170000 144320000 118850000 247850000 134500000 113350000 15318000 9821600 5496000 8559 1314 8777;8778 30971;30972;30973;30974;30975;30976;30977;30978;30979;30980;30981;30982;30983;30984;30985;30986;30987 46622;46623;46624;46625;46626;46627;46628;46629;46630;46631;46632;46633;46634;46635;46636;46637;46638;46639;46640;46641;46642;46643;46644;46645 46627 548 23 MRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVK EIRNFLGEKYIRRVRMRPGVACSVSQAQKD VSNSAALIQQATTVKNKDIRKFLDGIYVSE R M R V K N 5 1 2 2 1 4 3 2 0 3 4 2 1 0 1 4 2 0 0 4 0 0 41 2 4383.2414 Q53Z07;P32969;H0Y9V9 Q53Z07 128 168 RPL9 60S ribosomal protein L9 yes no 4 3.419E-16 77.026 4 0.77663 0.91609 28.952 4 Median 0.77663 0.91609 28.952 4 0 Median NaN NaN NaN 0 0 Median 39998000 22958000 17040000 39998000 22958000 17040000 0 0 0 8560 1314 8779;8780 30988;30989;30990;30991 46646;46647;46648;46649;46650;46651;46652 46651 548 6 MRPLTEEETR ______________________________ ______________________________ - M R T R V 0 2 0 0 0 0 3 0 0 0 1 0 1 0 1 0 2 0 0 0 0 0 10 1 1260.6132 Q9Y221;B3KM49;J3QLW7 Q9Y221 1 10 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog yes no 2 0.021535 93.667 1 0.63092 0.87815 NaN 1 Median 0.63092 0.87815 NaN 1 0 Median NaN NaN NaN 0 0 Median 2721600 1394600 1327000 2721600 1394600 1327000 0 0 0 8561 1800 8781 30992 46653 46653 1 MRQRMLK ______________________________ ______________________________ - M R L K A 0 2 0 0 0 1 0 0 0 0 1 1 2 0 0 0 0 0 0 0 0 0 7 2 961.53136 B3KMD1;Q9HCB6 B3KMD1 1 7 SPON1 Spondin-1 yes no 2 0.012292 77.748 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8562 755 8782 30993 46654 46654 263 1 MRYVASYLLAALGGNSSPSAK ______________________________ YLLAALGGNSSPSAKDIKKILDSVGIEADD - M R A K D 4 1 1 0 0 0 0 2 0 0 3 1 1 0 1 4 0 0 2 1 0 0 21 1 2155.1096 A0A024RCA7;P05387 A0A024RCA7 1 21 RPLP2 60S acidic ribosomal protein P2 yes no 3 4.3534E-05 79.942 2 0.84672 1.1185 6.3396 2 Median 0.84672 1.1185 6.3396 2 0 Median NaN NaN NaN 0 0 Median 15518000 7643400 7874900 15518000 7643400 7874900 0 0 0 8563 291 8783 30994;30995 46655;46656;46657 46657 115 3 MSATFIGNNTAIQELFKR NVKTAVCDIPPRGLKMSATFIGNNTAIQEL TFIGNNTAIQELFKRVSEQFTAMFRRKAFL K M S K R V 2 1 2 0 0 1 1 1 0 2 1 1 1 2 0 1 2 0 0 0 0 0 18 1 2040.0462 Q3ZCM7;A0A075B736;Q5SQY0 Q3ZCM7 363 380 TUBB8 Tubulin beta-8 chain yes no 3 0.037913 52.93 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2030400 2030400 0 2030400 2030400 0 0 0 0 8564 1532 8784 30996 46658 46658 1 MSATFIGNSTAIQELFK NVKTAVCDIPPRGLKMSATFIGNSTAIQEL ATFIGNSTAIQELFKRISEQFTAMFRRKAF K M S F K R 2 0 1 0 0 1 1 1 0 2 1 1 1 2 0 2 2 0 0 0 0 0 17 0 1856.9342 Q8IZ29;P68371;Q8N6N5;B3KML9;Q96HX0;Q9BVA1;Q13885;A0A024QZU2;B2R6L0;O43209;B7Z4N1;Q9UGA2 Q8IZ29 363 379 TUBB2C;TUBB4B;TUBB2B;TUBB2A;DKFZp566F223 Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain no no 2 2.2976E-30 178.15 5 0.40583 0.51484 6.4427 5 Median 0.40583 0.51484 6.4427 5 0 Median NaN NaN NaN 0 0 Median 55501000 38402000 17099000 55501000 38402000 17099000 0 0 0 8565 1423;1479 8785;8786 30997;30998;30999;31000;31001 46659;46660;46661;46662;46663;46664;46665;46666 46662 627 8 MSAVSQDAIEDSR SDKAYGRKVLTWDGKMSAVSQDAIEDSRQA GKMSAVSQDAIEDSRQARTETVVDDWDEEF K M S S R Q 2 1 0 2 0 1 1 0 0 1 0 0 1 0 0 3 0 0 0 1 0 0 13 0 1407.63 A0A024R8V6;Q9P275;B3KMW2;K7EIH0 A0A024R8V6 1049 1061 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 2 2.1478E-05 81.625 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5018500 5018500 0 0 0 0 5018500 5018500 0 8566 205 8787 31002;31003;31004 46667;46668;46669 46669 87 3 MSDPAAFESRLEK ______________________________ ______________________________ - M S E K R 2 1 0 1 0 0 2 0 0 0 1 1 1 1 1 2 0 0 0 0 0 0 13 1 1479.7028 E9PPX6 E9PPX6 1 13 ATPAF1 yes yes 3 0.0016736 35.204 1 0.30142 0.3957 NaN 1 Median 0.30142 0.3957 NaN 1 0 Median NaN NaN NaN 0 0 Median 21740000 16410000 5330400 21740000 16410000 5330400 0 0 0 8567 1043 8788 31005 46670 46670 1 MSFTTRSTTFSTNYR ______________________________ MSFTTRSTTFSTNYRSLGSVRTPSQRVRPA - M S Y R S 0 2 1 0 0 0 0 0 0 0 0 0 1 2 0 3 5 0 1 0 0 0 15 1 1798.8308 CON__P05784 CON__P05784 1 15 yes yes 3 0.039297 51.211 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 8568 954 8789 31006 46671 46671 1 MSGECAPNVSVSVSTSHTTISGGGSR EIATYRTLLEGEESRMSGECAPNVSVSVST SVSTSHTTISGGGSRGGGGGGYGSGGSSYG R M S S R G 1 1 1 0 1 0 1 4 1 1 0 0 1 0 1 7 3 0 0 3 0 0 26 0 2564.1595 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 493 518 KRT1 Keratin, type II cytoskeletal 1 no no 3 9.8161E-44 158.2 7 5 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 731760000 731760000 0 288890000 288890000 0 442860000 442860000 0 + 8569 1113;1114 8790;8791 31007;31008;31009;31010;31011;31012;31013;31014;31015;31016;31017;31018 46672;46673;46674;46675;46676;46677;46678;46679;46680;46681;46682;46683;46684 46676 394 13 MSKLPADSSVPQTGAANGDR ______________________________ ADSSVPQTGAANGDRDVPQAEVGRGRREPA - M S D R D 3 1 1 2 0 1 0 2 0 0 1 1 1 0 2 3 1 0 0 1 0 0 20 1 2000.9586 Q8N6I1 Q8N6I1 1 20 EID2 EP300-interacting inhibitor of differentiation 2 yes yes 2 0.012692 86.803 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2791400 0 2791400 2791400 0 2791400 0 0 0 8570 1641 8792 31019 46685 46685 730 1 MSQVAPSLSALIGEAVGAR LSEYRQSLHTYLRSKMSQVAPSLSALIGEA APSLSALIGEAVGARLIAHAGSLTNLAKYP K M S A R L 4 1 0 0 0 1 1 2 0 1 2 0 1 0 1 3 0 0 0 2 0 0 19 0 1855.9826 A8K9K6;O00567;A0PJ92;H0YDU4;H0Y653 A8K9K6 289 307 NOP56 Nucleolar protein 56 yes no 2 3.2654E-41 176.29 8 1 0.69753 0.94432 31.81 7 Median 0.69753 0.94432 31.81 7 0 Median NaN NaN NaN 0 0 Median 272480000 174050000 98432000 229280000 130850000 98432000 43199000 43199000 0 8571 647 8793;8794 31020;31021;31022;31023;31024;31025;31026;31027;31028 46686;46687;46688;46689;46690;46691;46692;46693;46694;46695;46696;46697;46698;46699;46700;46701;46702 46693 225 16 MSSYAFFVQTCR ______________________________ RGKMSSYAFFVQTCREEHKKKHPDASVNFS K M S C R E 1 1 0 0 1 1 0 0 0 0 0 0 1 2 0 2 1 0 1 1 0 0 12 0 1495.6588 D6R9A6;Q5U071;P26583;Q5T7C4;B7Z965;Q59GW1;A0A024RDR0;P09429;B2RPK0;Q9NYD7;Q75MM1 Q5T7C4 13 24 HMGB2;HMGB1;HMGB1P1;HMG1;WUGSC:H_NH0244E06.1 High mobility group protein B2;High mobility group protein B1;Putative high mobility group protein B1-like 1 no no 2 6.4786E-06 138.22 4 2 0.75868 1.0161 21.842 6 Median 0.82052 1.106 15.063 4 0 Median 0.51825 0.80705 11.385 2 0 Median 93255000 54436000 38819000 45049000 22656000 22392000 48206000 31780000 16426000 8572 322;988 8795 31029;31030;31031;31032;31033;31034 46703;46704;46705;46706;46707;46708;46709;46710;46711;46712;46713 46705 119 10 MSTSPEAFLALR ESKVPADLLKRAFVRMSTSPEAFLALRSHF FVRMSTSPEAFLALRSHFASSHALICISHW R M S L R S 2 1 0 0 0 0 1 0 0 0 2 0 1 1 1 2 1 0 0 0 0 0 12 0 1321.67 P78527 P78527 3890 3901 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00095339 93.667 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14726000 14726000 0 0 0 0 14726000 14726000 0 8573 1427 8796 31035;31036;31037 46714;46715;46716;46717 46715 632 4 MSTVSELR KIPAPKESLRSRSTRMSTVSELRITAQEND LRSRSTRMSTVSELRITAQENDMEVELPAA R M S L R I 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 2 1 0 0 1 0 0 8 0 921.45897 A8K3S3;A0A140VKF1;Q99661;B7Z7M6;B7Z6Q6;Q5JR91;Q5JR89 A8K3S3 114 121 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 2 0.013148 54.776 1 0.7942 1.1708 NaN 1 Median NaN NaN NaN 0 0 Median 0.7942 1.1708 NaN 1 0 Median 7871200 4050900 3820300 0 0 0 7871200 4050900 3820300 8574 514 8797 31038 46718 46718 181 1 MSVQPTVSLGGFEITPPVVLR NYEGSPIKVTLATLKMSVQPTVSLGGFEIT VSLGGFEITPPVVLRLKCGSGPVHISGQHL K M S L R L 0 1 0 0 0 1 1 2 0 1 2 0 1 1 3 2 2 0 0 4 0 0 21 0 2226.2082 A0A0S2Z4G7;A0A0S2Z491;P06748;A0A140VJQ2;A4ZU86;Q9BTI9;E5RI98;Q9NX34 A0A0S2Z4G7 81 101 NPM1 Nucleophosmin no no 2 5.2524E-89 217.39 9 2 0.59075 0.81199 19.234 11 Median 0.5694 0.78954 4.3492 9 0 Median 0.77014 1.2708 4.8406 2 0 Median 1258700000 771710000 486960000 856330000 542350000 313990000 402330000 229360000 172970000 8575 462;1765 8798;8799 31039;31040;31041;31042;31043;31044;31045;31046;31047;31048;31049 46719;46720;46721;46722;46723;46724;46725;46726;46727;46728;46729;46730;46731;46732;46733;46734;46735;46736;46737;46738;46739;46740;46741 46725 164 23 MTEIQTPENTPR ATFIGLDKMAVWAKKMTEIQTPENTPRLFD AKKMTEIQTPENTPRLFDLVKVKDEKIRQA K M T P R L 0 1 1 0 0 1 2 0 0 1 0 0 1 0 2 0 3 0 0 0 0 0 12 0 1415.6715 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 681 692 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 5.8954E-41 219.7 5 3 0.62639 0.96259 13.145 6 Median 0.66771 0.89046 14.533 4 0 Median 0.60958 0.99299 0.75365 2 0 Median 198020000 125920000 72097000 45912000 29508000 16404000 152100000 96412000 55693000 8576 1760 8800;8801 31050;31051;31052;31053;31054;31055;31056;31057 46742;46743;46744;46745;46746;46747;46748;46749;46750;46751;46752;46753;46754;46755 46743 807 13 MTHNLLLNYGLYR YYYGQGHPMKPHRIRMTHNLLLNYGLYRKM IRMTHNLLLNYGLYRKMEIYRPHKATAEEM R M T Y R K 0 1 2 0 0 0 0 1 1 0 4 0 1 0 0 0 1 0 2 0 0 0 13 0 1606.829 Q92769;E5RFI6;E5RJ04;E5RGV4;E5RHE7;E5RH52;E5RG37;E5RFP9;H3BM24;E5RK19;Q6IT96;B5BU61;Q13547;Q5TEE2;B4DSK9 Q92769 38 50 HDAC2;HDAC1 Histone deacetylase 2;Histone deacetylase;Histone deacetylase 1 no no 3 9.7467E-06 86.803 2 3 0.85153 1.376 37.726 4 Median 0.59688 0.8009 NaN 1 0 Median 0.86941 1.4232 21.779 3 0 Median 139030000 79575000 59460000 20939000 13678000 7261000 118100000 65897000 52199000 8577 1675;894 8802;8803 31058;31059;31060;31061;31062 46756;46757;46758;46759;46760 46758 306 5 MTLDDFR TVGNNKTLLDIDNTRMTLDDFRIKFEMEQN LLDIDNTRMTLDDFRIKFEMEQNLRQGVDA R M T F R I 0 1 0 2 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 7 0 896.4062 CON__P35527;P35527;K7EQQ3 CON__P35527 234 240 KRT9 Keratin, type I cytoskeletal 9 yes no 2 0.010072 119.56 2 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60621000 60621000 0 9544400 9544400 0 51077000 51077000 0 + 8578 963 8804;8805 31063;31064;31065;31066;31067 46761;46762;46763;46764;46765 46762 340 5 MTLQLIK RAQQSAVRLTEIGPRMTLQLIKVQEGVGEG RLTEIGPRMTLQLIKVQEGVGEGKVMFHSF R M T I K V 0 0 0 0 0 1 0 0 0 1 2 1 1 0 0 0 1 0 0 0 0 0 7 0 845.50446 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;H7C446 A0A0A6YYI3 279 285 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 0.01702 62.717 1 0.70512 0.89755 NaN 1 Median 0.70512 0.89755 NaN 1 0 Median NaN NaN NaN 0 0 Median 6541400 3327500 3214000 6541400 3327500 3214000 0 0 0 8579 408 8806 31068 46766;46767 46767 128 2 MTLSLADR LTFRPHSTDSATHRKMTLSLADRCSKTQKI DSATHRKMTLSLADRCSKTQKIRILPMAGR K M T D R C 1 1 0 1 0 0 0 0 0 0 2 0 1 0 0 1 1 0 0 0 0 0 8 0 905.46405 B4DNM0;Q8WVC0 B4DNM0 482 489 LEO1 RNA polymerase-associated protein LEO1 yes no 2 0.029764 53.968 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2209300 0 2209300 0 0 0 2209300 0 2209300 8580 838 8807 31069 46768 46768 1 MTPSYEIR GDVKNFLYAWCGKRKMTPSYEIRAVGNKNR AWCGKRKMTPSYEIRAVGNKNRQKFMCEVQ K M T I R A 0 1 0 0 0 0 1 0 0 1 0 0 1 0 1 1 1 0 1 0 0 0 8 0 995.47462 Q08211;Q58F26;Q6PJK6 Q08211 17 24 DHX9 ATP-dependent RNA helicase A yes no 2 0.0052634 79.906 4 1 0.79815 1.0787 2.894 2 Median 0.79815 1.0787 2.894 2 0 Median NaN NaN NaN 0 0 Median 45089000 19365000 25723000 37301000 19365000 17936000 7787200 0 7787200 8581 1448 8808;8809 31070;31071;31072;31073;31074 46769;46770;46771;46772;46773;46774 46773 654 6 MTQNPNYYNLQGISHR QDAVDYLTWTFLYRRMTQNPNYYNLQGISH TQNPNYYNLQGISHRHLSDHLSELVEQTLS R M T H R H 0 1 3 0 0 2 0 1 1 1 1 0 1 0 1 1 1 0 2 0 0 0 16 0 1934.9057 O75643;A4FU77;B4E150;B4E0P5;Q9UNV9;A2RRQ7;Q7L5W4 O75643 1764 1779 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 0.00018916 65.225 1 1 0.73177 1.0305 35.661 2 Median 0.57202 0.80085 NaN 1 0 Median 0.93614 1.3261 NaN 1 0 Median 14485000 7836000 6648700 2110600 1412200 698360 12374000 6423800 5950300 8582 1206 8810 31075;31076 46775;46776;46777 46776 444 2 MVADLVENSYSISVPIFK GPKNEVEKCTKYMQKMVADLVENSYSISVP DLVENSYSISVPIFKQFHKNIIGKGGANIK K M V F K Q 1 0 1 1 0 0 1 0 0 2 1 1 1 1 1 3 0 0 1 3 0 0 18 0 2011.0336 B2R5V9;A0A024R4E5;Q00341;Q6ZS03;Q96CF6;H0Y394;Q6ZN49;H7BZC3 B2R5V9 573 590 HDLBP Vigilin yes no 2 0.03477 79.633 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8583 122 8811 31077 46778 46778 1 MVEDLISVGEEESFNLK LADNINLGDPSSMLKMVEDLISVGEEESFN EDLISVGEEESFNLKQKVTFHVILSVLVSC K M V L K Q 0 0 1 1 0 0 4 1 0 1 2 1 1 1 0 2 0 0 0 2 0 0 17 0 1937.9292 B2RWN5;Q9H583;Q5T3Q7;A2VDI1 B2RWN5 683 699 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 2.0132E-25 168.61 5 1 0.68303 0.92252 14.739 5 Median 0.74675 0.95874 16.772 4 0 Median 0.61825 0.92252 NaN 1 0 Median 38165000 22595000 15570000 26361000 15716000 10645000 11804000 6878500 4925200 8584 748 8812 31078;31079;31080;31081;31082;31083 46779;46780;46781;46782;46783;46784;46785;46786;46787;46788;46789;46790 46780 260 12 MVFINNIALAQIK QKMLNGLEDSIGLSKMVFINNIALAQIKNN SKMVFINNIALAQIKNNNIDAAIENIENML K M V I K N 2 0 2 0 0 1 0 0 0 3 1 1 1 1 0 0 0 0 0 1 0 0 13 0 1473.8378 E5KNY5;P42704 E5KNY5 1177 1189 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.00064641 101.46 3 0.48417 0.59417 NaN 1 Median 0.48417 0.59417 NaN 1 0 Median NaN NaN NaN 0 0 Median 6104800 4877200 1227600 6104800 4877200 1227600 0 0 0 8585 1001 8813;8814 31084;31085;31086 46791;46792;46793 46793 362 3 MVGSALR ______________________________ ______________________________ - M V L R R 1 1 0 0 0 0 0 1 0 0 1 0 1 0 0 1 0 0 0 1 0 0 7 0 732.39524 R4GMX6;O95363 R4GMX6 1 7 FARS2 Phenylalanine--tRNA ligase, mitochondrial yes no 2 0.016284 47.045 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3088300 3088300 0 3088300 3088300 0 0 0 0 8586 1218 8815 31087 46794 46794 459 1 MVIPALIQSDSGDSIEVSR LDDTYSFQVINKTVKMVIPALIQSDSGDSI ALIQSDSGDSIEVSRNVEEIVVKIISVFVD K M V S R N 1 1 0 2 0 1 1 1 0 3 1 0 1 0 1 4 0 0 0 2 0 0 19 0 2016.0198 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8;Q8N7L7 B2RWN5 1352 1370 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 8.6552E-39 138.42 6 1 0.86477 1.1575 9.1107 3 Median 0.86759 1.1682 1.3053 2 0 Median 0.64731 0.9985 NaN 1 0 Median 56111000 28342000 27769000 32588000 15093000 17495000 23522000 13249000 10273000 8587 748 8816;8817 31088;31089;31090;31091;31092;31093;31094 46795;46796;46797;46798;46799;46800;46801;46802;46803;46804 46800 261 10 MVLCSQQWK AELMANMKDVPSTERMVLCSQQWKLLSQKE VPSTERMVLCSQQWKLLSQKEKDAYHKKCD R M V W K L 0 0 0 0 1 2 0 0 0 0 1 1 1 0 0 1 0 1 0 1 0 0 9 0 1178.5576 E9PKP7;P17480;A8K962;B4DNQ1;O00164;B4DLB0;Q05BZ1 E9PKP7 288 296 UBTF Nucleolar transcription factor 1 yes no 2 0.024414 40.778 1 0.83887 1.1772 NaN 1 Median NaN NaN NaN 0 0 Median 0.83887 1.1772 NaN 1 0 Median 4033000 2461100 1571900 0 0 0 4033000 2461100 1571900 8588 1039 8818 31095 46805 46805 373 1 MVLLFEILR FVTDADAEVLEHSGKMVLLFEILRMAEEIG LEHSGKMVLLFEILRMAEEIGDKVLVFSQS K M V L R M 0 1 0 0 0 0 1 0 0 1 3 0 1 1 0 0 0 0 0 1 0 0 9 0 1132.6678 A4LAA3;P46100;B4DHH8;B4DLE1 A4LAA3 2020 2028 ATRX Transcriptional regulator ATRX yes no 2 0.012445 50.607 1 0.72541 0.98076 NaN 1 Median 0.72541 0.98076 NaN 1 0 Median NaN NaN NaN 0 0 Median 3441800 1979600 1462200 3441800 1979600 1462200 0 0 0 8589 556 8819 31096 46806 46806 195 1 MVLNESLK GIDRLRLDKFYMLMRMVLNESLKVLKMQGW KFYMLMRMVLNESLKVLKMQGWEERQIEEL R M V L K V 0 0 1 0 0 0 1 0 0 0 2 1 1 0 0 1 0 0 0 1 0 0 8 0 932.5001 Q6PJJ2;P56182;B4DZM3;Q53FR7 Q6PJJ2 129 136 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 2 0.0025411 95.352 1 2 0.52564 0.79417 14.248 3 Median 0.7845 1.0039 NaN 1 0 Median 0.51979 0.785 1.6435 2 0 Median 34167000 22357000 11810000 4573900 2790500 1783400 29593000 19566000 10027000 8590 1381 8820 31097;31098;31099 46807;46808;46809;46810 46808 599 4 MVNHFIAEFK TAGDTHLGGEDFDNRMVNHFIAEFKRKHKK DFDNRMVNHFIAEFKRKHKKDISENKRAVR R M V F K R 1 0 1 0 0 0 1 0 1 1 0 1 1 2 0 0 0 0 0 1 0 0 10 0 1234.6169 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;Q53HF2;E9PN89;B4E1Q1;A8K7Q2 V9HW22 237 246 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 2;3 6.8245E-07 142 3 1 0.42062 0.54517 NaN 1 Median 0.42062 0.54517 NaN 1 0 Median NaN NaN NaN 0 0 Median 34251000 23908000 10343000 27182000 23908000 3273900 7068800 0 7068800 8591 1253 8821;8822 31100;31101;31102;31103 46811;46812;46813;46814;46815 46812 494 5 MVPAGMGAGLER RMGPAIERMGLSMERMVPAGMGAGLERMGP MERMVPAGMGAGLERMGPVMDRMATGLERM R M V E R M 2 1 0 0 0 0 1 3 0 0 1 0 2 0 1 0 0 0 0 1 0 0 12 0 1187.5791 P52272;A0A087X0X3;Q59ES8;Q7KYM9;Q6P2D7;M0R2I7;M0QZM1 P52272 532 543 HNRNPM;ORF;HNRPM Heterogeneous nuclear ribonucleoprotein M no no 2 0.0073426 45.158 2 2.9725 4.2923 NaN 1 Median NaN NaN NaN 0 0 Median 2.9725 4.2923 NaN 1 0 Median 25430000 2499300 22931000 0 0 0 25430000 2499300 22931000 8592 1363;1160 8823 31104;31105 46816;46817 46816 422;423 2 MVPFQVPEILR SGFAYHLFPRSRLEKMVPFQVPEILRTPLE RLEKMVPFQVPEILRTPLENLVLQAKIHMP K M V L R T 0 1 0 0 0 1 1 0 0 1 1 0 1 1 2 0 0 0 0 2 0 0 11 0 1327.7322 H7BXY3;A0A024R2T6;Q7L2E3;Q6W6M7 H7BXY3 775 785 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.0074558 45.137 1 0.62929 0.83946 NaN 1 Median 0.62929 0.83946 NaN 1 0 Median NaN NaN NaN 0 0 Median 3042200 2097700 944500 3042200 2097700 944500 0 0 0 8593 93 8824 31106 46818 46818 54 1 MVSISNYPLSAALTCAK GAFAHGKVSVEYTEKMVSISNYPLSAALTC SISNYPLSAALTCAKLTTAFEEAWGVI___ K M V A K L 3 0 1 0 1 0 0 0 0 1 2 1 1 0 1 3 1 0 1 1 0 0 17 0 1824.9114 A8K6D2;Q92979;A0A087WVM7 A8K6D2 216 232 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 2 1.3228E-13 119.39 5 1.0078 1.2838 6.0632 4 Median 1.0078 1.2838 6.0632 4 0 Median NaN NaN NaN 0 0 Median 19277000 9122700 10154000 19277000 9122700 10154000 0 0 0 8594 623 8825;8826 31107;31108;31109;31110;31111 46819;46820;46821;46822;46823;46824 46823 208 4 MVVPAALK KVFDGIPPPYDKKKRMVVPAALKVVRLKPT PYDKKKRMVVPAALKVVRLKPTRKFAYLGR R M V L K V 2 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 2 0 0 8 0 827.4939 Q53H34;P40429;Q5QTS3;M0QYS1;Q8J015;Q0VGL3;Q6NVV1;Q9BSQ6 Q53H34 118 125 RPL13A;RPL13a;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 no no 2 0.010817 69.383 3 1 0.78294 0.95531 2.3216 3 Median 0.78727 0.96053 0.77176 2 0 Median 0.56901 0.92372 NaN 1 0 Median 137820000 63962000 73860000 82544000 28817000 53727000 55278000 35145000 20133000 8595 1332;1712 8827;8828 31112;31113;31114;31115 46825;46826;46827;46828;46829 46829 558 5 MYAALGDPK KTPVNKKNIEKMYERMYAALGDPKAPGLGA EKMYERMYAALGDPKAPGLGAFRRKFIQTF R M Y P K A 2 0 0 1 0 0 0 1 0 0 1 1 1 0 1 0 0 0 1 0 0 0 9 0 964.4688 P78527 P78527 3613 3621 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.036948 46.813 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 793330 793330 0 0 0 0 793330 793330 0 8596 1427 8829 31116 46830 46830 1 MYEEHLK ADYESVNECMEGVCKMYEEHLKRMNPNSPS ECMEGVCKMYEEHLKRMNPNSPSITYDISQ K M Y L K R 0 0 0 0 0 0 2 0 1 0 1 1 1 0 0 0 0 0 1 0 0 0 7 0 948.4375 A0A024R6D4;P84090;G3V279 A0A024R6D4 35 41 ERH Enhancer of rudimentary homolog yes no 2 0.032699 60.788 1 0.52712 0.66039 NaN 1 Median 0.52712 0.66039 NaN 1 0 Median NaN NaN NaN 0 0 Median 7700900 4813200 2887700 7700900 4813200 2887700 0 0 0 8597 159 8830 31117 46831 46831 1 MYSYPAR SFDLDYDFQRDYYDRMYSYPARVPPPPPIA FQRDYYDRMYSYPARVPPPPPIARAVVPSK R M Y A R V 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 2 0 0 0 7 0 886.40072 B2R5W2;G3V4C1;G3V4W0;B4DY08;B3KX96;B2R603;G3V2Q1;P07910;G3V576;A8K9A4;G3V2D6;D3DPI2;G3V555;G3V575;B4DQQ2 B2R5W2 123 129 HNRNPC;hCG_1641229 Heterogeneous nuclear ribonucleoproteins C1/C2 no no 2 0.020213 68.398 1 1 0.71519 1.0611 NaN 1 Median NaN NaN NaN 0 0 Median 0.71519 1.0611 NaN 1 0 Median 17852000 14842000 3010000 10183000 10183000 0 7669000 4659000 3010000 8598 694 8831;8832 31118;31119 46832;46833;46834 46832 3 MYVPALIFGQLLTSSNYDDDEKK NNGKGIPVVEHKVEKMYVPALIFGQLLTSS GQLLTSSNYDDDEKKVTGGRNGYGAKLCNI K M Y K K V 1 0 1 3 0 1 1 1 0 1 3 2 1 1 1 2 1 0 2 1 0 0 23 1 2646.2887 P11388;J3KTB7 P11388 135 157 TOP2A DNA topoisomerase 2-alpha yes no 3 4.0603E-18 126.29 4 0.85621 1.051 4.3387 4 Median 0.85621 1.051 4.3387 4 0 Median NaN NaN NaN 0 0 Median 159890000 80627000 79264000 159890000 80627000 79264000 0 0 0 8599 1256 8833 31120;31121;31122;31123 46835;46836;46837;46838;46839;46840;46841 46840 515 7 NAADPISGDFK TTNVHSSEHAGRNGRNAADPISGDFKEISS RNGRNAADPISGDFKEISSVKLVSRYGELK R N A F K E 2 0 1 2 0 0 0 1 0 1 0 1 0 1 1 1 0 0 0 0 0 0 11 0 1133.5353 P46013 P46013 194 204 MKI67 Antigen KI-67 yes yes 2 1.1735E-11 160.36 4 2 1.0259 1.3129 21.825 6 Median 0.95816 1.2118 7.9266 4 0 Median 1.1719 1.8757 2.052 2 0 Median 304310000 146460000 157840000 200900000 100400000 100510000 103400000 46068000 57335000 8600 1342 8834 31124;31125;31126;31127;31128;31129 46842;46843;46844;46845;46846;46847;46848;46849;46850;46851;46852 46848 11 NAALFALGQFSENLQPHISSYSR QIVCKGLEDPSQVVRNAALFALGQFSENLQ QFSENLQPHISSYSREVMPLLLAYLKSVPL R N A S R E 3 1 2 0 0 2 1 1 1 1 3 0 0 2 1 4 0 0 1 0 0 0 23 0 2549.2663 B3KPY9;Q6I9Y8;B3KSQ4;H0YN14;D3DS63;B3KTB3;B3KT38;B3KPS9;B3KQ33;Q59FI4;Q8TEX9;Q59H62 B3KPY9 74 96 IPO4 Importin-4 yes no 3 1.25E-05 80.41 2 0.43088 0.60874 1.9893 2 Median 0.43088 0.60874 1.9893 2 0 Median NaN NaN NaN 0 0 Median 7508400 5469800 2038600 7508400 5469800 2038600 0 0 0 8601 766 8835 31130;31131 46853;46854;46855 46854 3 NAALNTIVTVYNVHGDQVFK KEIAVHIGDRDNAVRNAALNTIVTVYNVHG TIVTVYNVHGDQVFKLIGNLSEKDMSMLEE R N A F K L 2 0 3 1 0 1 0 1 1 1 1 1 0 1 0 0 2 0 1 4 0 0 20 0 2202.1433 Q14008;Q8IYN5 Q14008 1384 1403 CKAP5 Cytoskeleton-associated protein 5 yes no 2;3 0.025632 71.933 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1172100 0 1172100 1172100 0 1172100 0 0 0 8602 1481 8836 31132;31133 46856;46857 46856 2 NAAPPPSNTEAPPGETR FAIPMIHAVLQWQKRNAAPPPSNTEAPPGE APPPSNTEAPPGETRTEAGAETRSPGKAEA R N A T R T 3 1 2 0 0 0 2 1 0 0 0 0 0 0 5 1 2 0 0 0 0 0 17 0 1704.8067 B4DKV2;G3V529;Q9GZR7;F5GYL3;B4E300;B4DM03;Q59FS7 B4DKV2 169 185 DDX24 ATP-dependent RNA helicase DDX24 yes no 2 0.00012695 97.69 3 0.90887 1.2038 17.002 2 Median 0.90887 1.2038 17.002 2 0 Median NaN NaN NaN 0 0 Median 3684700 1999600 1685100 3684700 1999600 1685100 0 0 0 8603 822 8837 31134;31135;31136 46858;46859;46860;46861;46862 46860 5 NACIECSVNQNSIR ASSLQLITECFRCLRNACIECSVNQNSIRN RNACIECSVNQNSIRNLDTIGVAVDLILLF R N A I R N 1 1 3 0 2 1 1 0 0 2 0 0 0 0 0 2 0 0 0 1 0 0 14 0 1663.7406 Q9UBB4;Q7Z524 Q9UBB4 90 103 ATXN10 Ataxin-10 yes no 2 0.00024647 84.605 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1914500 1914500 0 1914500 1914500 0 0 0 0 8604 1780 8838 31137 46863 46863 1 NADHLLHLK TVATGKNGDTLPLSKNADHLLHLKTKGPEN TLPLSKNADHLLHLKTKGPENIICSCISPC K N A L K T 1 0 1 1 0 0 0 0 2 0 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1059.5825 Q969X6;H3BSH7;A0A0J9YWM9;H3BRM8;A0A0J9YWK2 Q969X6 378 386 CIRH1A Cirhin yes no 2;3 0.00075289 128.86 3 0.98462 1.215 4.0106 2 Median 0.98462 1.215 4.0106 2 0 Median NaN NaN NaN 0 0 Median 84099000 41018000 43081000 84099000 41018000 43081000 0 0 0 8605 1680 8839 31138;31139;31140 46864;46865;46866;46867 46864 4 NADPILISLK GPEAALEAEEWFEGKNADPILISLKHGYIP WFEGKNADPILISLKHGYIPGKNRDLKVVK K N A L K H 1 0 1 1 0 0 0 0 0 2 2 1 0 0 1 1 0 0 0 0 0 0 10 0 1082.6336 B4DMH3;Q53G58;B3KN06;A0A024RBI5;Q59EA2;Q9ULV4;B7Z9V0;B4E3S0;H0YHL7 B4DMH3 345 354 CORO1C Coronin;Coronin-1C yes no 2 0.00051281 86.898 5 1.3684 1.709 7.1053 5 Median 1.3684 1.709 7.1053 5 0 Median NaN NaN NaN 0 0 Median 232080000 99953000 132130000 232080000 99953000 132130000 0 0 0 8606 274 8840 31141;31142;31143;31144;31145 46868;46869;46870;46871;46872;46873;46874;46875;46876 46873 9 NAEDVQHQILATESSNQEYVR LENSSLQEKAAKAGKNAEDVQHQILATESS HQILATESSNQEYVRMLLDLQTKSAKKKKK K N A V R M 2 1 2 1 0 3 3 0 1 1 1 0 0 0 0 2 1 0 1 2 0 0 21 0 2430.1411 Q05DM0;Q6NSC0;Q6PG44;B4DZK6;O75330 Q05DM0 475 495 HMMR Hyaluronan mediated motility receptor yes no 3 6.9696E-05 95.307 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2606100 2606100 0 2606100 2606100 0 0 0 0 8607 880 8841 31146;31147 46877;46878 46878 2 NAENAYHIHQAR QEDYDSNHFKAQALKNAENAYHIHQARTRS ALKNAENAYHIHQARTRSFDEDAKESRAAA K N A A R T 3 1 2 0 0 1 1 0 2 1 0 0 0 0 0 0 0 0 1 0 0 0 12 0 1422.6753 A0A024R9R7;Q9ULG1;A8K2V6;H0YMN5 A0A024R9R7 454 465 INOC1;INO80 DNA helicase INO80 yes no 3 0.015007 89.9 1 0.75552 1.0675 NaN 1 Median 0.75552 1.0675 NaN 1 0 Median NaN NaN NaN 0 0 Median 2793400 1882600 910750 2793400 1882600 910750 0 0 0 8608 230 8842 31148 46879 46879 1 NAEPLINLDVNNPDFK DLVPDNSKTADNATKNAEPLINLDVNNPDF AEPLINLDVNNPDFKAGVMALANLLQIQRH K N A F K A 1 0 4 2 0 0 1 0 0 1 2 1 0 1 2 0 0 0 0 1 0 0 16 0 1811.9054 Q5RLJ0;Q549M8;Q9Y224;G3V4C6;H0YJB9 Q5RLJ0 116 131 C14orf166 UPF0568 protein C14orf166 yes no 2 2.8499E-33 179.67 4 0.75843 0.94625 4.3955 3 Median 0.75843 0.94625 4.3955 3 0 Median NaN NaN NaN 0 0 Median 99194000 64757000 34437000 99194000 64757000 34437000 0 0 0 8609 1544 8843 31149;31150;31151;31152 46880;46881;46882;46883;46884;46885;46886 46881 7 NAFATPTISLQESCDYLDR AEDDELEEEADWIYRNAFATPTISLQESCD TPTISLQESCDYLDRGQPASSFSRKGPSTI R N A D R G 2 1 1 2 1 1 1 0 0 1 2 0 0 1 1 2 2 0 1 0 0 0 19 0 2200.0106 Q7KZ85 Q7KZ85 323 341 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.0023343 68.83 2 0.86611 1.2065 7.6954 2 Median 0.86611 1.2065 7.6954 2 0 Median NaN NaN NaN 0 0 Median 7158500 3701100 3457400 7158500 3701100 3457400 0 0 0 8610 1609 8844 31153;31154 46887;46888 46887 2 NAFGLHLIDFMSEILK STCIKLSTENKITTKNAFGLHLIDFMSEIL AFGLHLIDFMSEILKQKDTEPTNFKVAAGT K N A L K Q 1 0 1 1 0 0 1 1 1 2 3 1 1 2 0 1 0 0 0 0 0 0 16 0 1846.9651 Q15003;B4DRG7;E9PHA2;C9J470 Q15003 127 142 NCAPH Condensin complex subunit 2 yes no 3 0.00038318 42.647 1 0.53934 0.79508 NaN 1 Median NaN NaN NaN 0 0 Median 0.53934 0.79508 NaN 1 0 Median 7352500 4073100 3279400 0 0 0 7352500 4073100 3279400 8611 1500 8845 31155 46889 46889 682 1 NAFYIGSYQQCINEAQR ASGGSGEVDELFDVKNAFYIGSYQQCINEA FYIGSYQQCINEAQRVKLSSPERDVERDVF K N A Q R V 2 1 2 0 1 3 1 1 0 2 0 0 0 1 0 1 0 0 2 0 0 0 17 0 2060.9374 M0QXB4;O14579;Q53HJ6;M0R061 M0QXB4 24 40 COPE Coatomer subunit epsilon yes no 2 4.4742E-06 126.32 3 0.42028 0.57659 NaN 1 Median 0.42028 0.57659 NaN 1 0 Median NaN NaN NaN 0 0 Median 5274800 3853600 1421100 5274800 3853600 1421100 0 0 0 8612 1158 8846 31156;31157;31158 46890;46891;46892;46893 46890 4 NAGNCLSPAVIVGLLK PKGTIQVITQGTSLKNAGNCLSPAVIVGLL AGNCLSPAVIVGLLKEASKQADVNLVNAKL K N A L K E 2 0 2 0 1 0 0 2 0 1 3 1 0 0 1 1 0 0 0 2 0 0 16 0 1624.8971 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2;Q8N5M8;Q9UMY3 O43175 365 380 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 2 8.8582E-25 163.45 4 0.68556 0.8529 7.6317 4 Median 0.68556 0.8529 7.6317 4 0 Median NaN NaN NaN 0 0 Median 90165000 53168000 36997000 90165000 53168000 36997000 0 0 0 8613 1182 8847 31159;31160;31161;31162 46894;46895;46896;46897;46898;46899;46900 46898 7 NAHLNALK LPAILDDTTLSGSDRNAHLNALKMNCYALI TLSGSDRNAHLNALKMNCYALIRLLESFET R N A L K M 2 0 2 0 0 0 0 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 8 0 879.49265 B3KMS0;Q15021;B4E0B7;A0PJ76;F5GZK7 B3KMS0 111 118 NCAPD2 Condensin complex subunit 1 yes no 2 5.3559E-11 173.11 1 2 0.4643 0.72638 5.8736 2 Median NaN NaN NaN 0 0 Median 0.4643 0.72638 5.8736 2 0 Median 126020000 103430000 22585000 54169000 54169000 0 71849000 49264000 22585000 8614 757 8848 31163;31164;31165 46901;46902;46903;46904;46905 46901 5 NAHSTAIAGLTFLHR GLWDLEDKKLINQMRNAHSTAIAGLTFLHR NAHSTAIAGLTFLHREPLLVTNGADNALRI R N A H R E 3 1 1 0 0 0 0 1 2 1 2 0 0 1 0 1 2 0 0 0 0 0 15 0 1607.8532 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 274 288 WDR36 WD repeat-containing protein 36 yes no 3 8.7335E-05 78.249 4 2 0.78509 1.0599 12.554 4 Median 0.78509 1.0599 12.554 4 0 Median NaN NaN NaN 0 0 Median 86802000 30199000 56603000 59770000 30199000 29570000 27033000 0 27033000 8615 404 8849 31166;31167;31168;31169;31170;31171 46906;46907;46908;46909;46910;46911;46912;46913 46911 8 NAIANASTLAEVER KKKGGPSPGDVEAIKNAIANASTLAEVERL KNAIANASTLAEVERLKGLLQSGQIPGRER K N A E R L 4 1 2 0 0 0 2 0 0 1 1 0 0 0 0 1 1 0 0 1 0 0 14 0 1457.7474 Q53G61;Q53G21;P09661;H0YMA0;H0YLR3 Q53G61 206 219 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 2 6.704E-28 174.57 4 2 0.83306 1.1178 18.113 5 Median 0.83306 1.1178 25.317 3 0 Median 0.80309 1.1341 5.408 2 0 Median 42239000 24011000 18228000 24374000 14362000 10012000 17865000 9649100 8215800 8616 1248 8850 31172;31173;31174;31175;31176;31177 46914;46915;46916;46917;46918;46919;46920;46921;46922;46923;46924 46920 11 NAIASDSEADSDTEVPK RGSDSEDEVLRMKRKNAIASDSEADSDTEV IASDSEADSDTEVPKDNSGTMDLFGGADDI K N A P K D 3 0 1 3 0 0 2 0 0 1 0 1 0 0 1 3 1 0 0 1 0 0 17 0 1747.7748 B4DNM0;Q8WVC0 B4DNM0 268 284 LEO1 RNA polymerase-associated protein LEO1 yes no 2 7.4631E-05 101.38 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2149200 2149200 0 2149200 2149200 0 0 0 0 8617 838 8851 31178;31179 46925;46926 46926 2 NAINIEELFQGISR YAESIGAIVVETSAKNAINIEELFQGISRQ KNAINIEELFQGISRQIPPLDPHENGNNGT K N A S R Q 1 1 2 0 0 1 2 1 0 3 1 0 0 1 0 1 0 0 0 0 0 0 14 0 1602.8366 Q53EY4;Q13636 Q53EY4 152 165 RAB31 Ras-related protein Rab-31 yes no 2 1.7843E-09 143.79 2 0.55472 0.75345 19.868 2 Median 0.55472 0.75345 19.868 2 0 Median NaN NaN NaN 0 0 Median 4697300 2969300 1728000 4697300 2969300 1728000 0 0 0 8618 1475 8852 31180;31181 46927;46928;46929 46927 2 NAIQIVQQAVK GCCLDISSMIKEAQKNAIQIVQQAVKYVGQ EAQKNAIQIVQQAVKYVGQLAVLKGSKLHF K N A V K Y 2 0 1 0 0 3 0 0 0 2 0 1 0 0 0 0 0 0 0 2 0 0 11 0 1210.7034 Q15058 Q15058 1373 1383 KIF14 Kinesin-like protein KIF14 yes yes 2 0.039103 37.549 1 0.66755 0.85122 NaN 1 Median 0.66755 0.85122 NaN 1 0 Median NaN NaN NaN 0 0 Median 6709800 3817500 2892300 6709800 3817500 2892300 0 0 0 8619 1504 8853 31182 46930 46930 1 NALANPLYCPDYR PQTHVIENLHAAAYRNALANPLYCPDYRIG YRNALANPLYCPDYRIGKVTSEELHYFVQN R N A Y R I 2 1 2 1 1 0 0 0 0 0 2 0 0 0 2 0 0 0 2 0 0 0 13 0 1565.7297 H3BSJ9;H3BRG4;P22695;H3BP04 H3BSJ9 184 196 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes no 2 0.031381 41.164 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4834500 4834500 0 0 0 0 4834500 4834500 0 8620 1108 8854 31183;31184 46931;46932 46932 2 NALFPEVFSPTPDENSDQNSR ESVLRREQEVAEERRNALFPEVFSPTPDEN VFSPTPDENSDQNSRSSSQASGITGSYSVS R N A S R S 1 1 3 2 0 1 2 0 0 0 1 0 0 2 3 3 1 0 0 1 0 0 21 0 2363.0666 Q8IVT2 Q8IVT2 567 587 MISP Mitotic interactor and substrate of PLK1 yes yes 2 0.014475 71.531 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 251460 0 251460 251460 0 251460 0 0 0 8621 1624 8855 31185;31186 46933;46934 46933 2 NALLQLTDSQIADVAR VESVFDIMEMEDEERNALLQLTDSQIADVA ALLQLTDSQIADVARFCNRYPNIELSYEVV R N A A R F 3 1 1 2 0 2 0 0 0 1 3 0 0 0 0 1 1 0 0 1 0 0 16 0 1726.9214 O75643;A4FU77;B4E150;B4E0P5;Q9UNV9;A2RRQ7;Q7L5W4;Q9P172 O75643 1994 2009 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 2.1764E-09 92.112 2 1.3056 1.9978 3.0629 2 Median NaN NaN NaN 0 0 Median 1.3056 1.9978 3.0629 2 0 Median 56186000 24054000 32132000 0 0 0 56186000 24054000 32132000 8622 1206 8856 31187;31188 46935;46936;46937 46937 3 NALQEAEAR GSRYQGVRGIGRVFKNALQEAEARFREIKL IGRVFKNALQEAEARFREIKLQREARETQE K N A A R F 3 1 1 0 0 1 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 9 0 1000.4938 O96028 O96028 960 968 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 2 0.0013546 99.442 1 2 0.9319 1.3544 8.7695 3 Plateau 0.93166 1.2329 NaN 1 0 Median 0.87863 1.2489 12.357 2 0 Median 34722000 18086000 16636000 11564000 5813600 5750200 23158000 12272000 10886000 8623 1228 8857 31189;31190;31191 46938;46939;46940;46941 46938 4 NALVQLHELRPGLQYR LQLVWKKLSWSVAPKNALVQLHELRPGLQY ALVQLHELRPGLQYRTVSQTGPVHAPVFAV K N A Y R T 1 2 1 0 0 2 1 1 1 0 4 0 0 0 1 0 0 0 1 1 0 0 16 1 1906.0537 Q9NS39 Q9NS39 128 143 ADARB2 Double-stranded RNA-specific editase B2 yes yes 3 0.027119 46.318 1 1.0433 1.4523 NaN 1 Median 1.0433 1.4523 NaN 1 0 Median NaN NaN NaN 0 0 Median 2747200 1186300 1560900 2747200 1186300 1560900 0 0 0 8624 1757 8858 31192 46942 46942 1 NAPNDASYDAVR ENVNSLLPVFEEFLKNAPNDASYDAVRQSV FLKNAPNDASYDAVRQSVVVLMGSLAKHLD K N A V R Q 3 1 2 2 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 1 0 0 12 0 1291.5793 E1NZA1;Q92616;A0A024RBS1 E1NZA1 1305 1316 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.0011217 77.379 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7710700 7710700 0 7710700 7710700 0 0 0 0 8625 1000 8859 31193 46943 46943 1 NAQFIIISLR KNVSIVAFYIYEQTKNAQFIIISLRNNMFE YEQTKNAQFIIISLRNNMFEISDRLIGIYK K N A L R N 1 1 1 0 0 1 0 0 0 3 1 0 0 1 0 1 0 0 0 0 0 0 10 0 1173.687 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1243 1252 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 2.69E-07 135.79 6 2 0.71248 0.98724 8.8367 5 Median 0.71248 0.98468 1.5261 3 0 Median 0.69983 1.1351 6.2506 2 0 Median 391360000 233740000 157610000 265840000 157930000 107900000 125520000 75809000 49710000 8626 1760 8860 31194;31195;31196;31197;31198;31199;31200;31201 46944;46945;46946;46947;46948;46949;46950;46951;46952;46953;46954;46955 46948 12 NAQGIINPIEAK LLQKMGYVPGRGLGKNAQGIINPIEAKQRK LGKNAQGIINPIEAKQRKGKGAVGAYGSER K N A A K Q 2 0 2 0 0 1 1 1 0 3 0 1 0 0 1 0 0 0 0 0 0 0 12 0 1266.6932 Q8N523;A0A024R1I7;Q9UBB9;H0Y4U8;B1AHQ3 Q8N523 171 182 TFIP11 Tuftelin-interacting protein 11 yes no 2 0.035156 63.073 1 0.47849 0.58998 NaN 1 Median 0.47849 0.58998 NaN 1 0 Median NaN NaN NaN 0 0 Median 1495400 979860 515560 1495400 979860 515560 0 0 0 8627 58 8861 31202 46956 46956 1 NAQLAQYNFILVVGEK DIDLDPGCTLNKKIRNAQLAQYNFILVVGE AQLAQYNFILVVGEKKKK____________ R N A E K K 2 0 2 0 0 2 1 1 0 1 2 1 0 1 0 0 0 0 1 2 0 0 16 0 1805.9676 Q5M7Z9;Q53GX7;P26639;B4DKZ9;B3KTN2;A2RTX5 Q5M7Z9 664 679 TARS;TARSL2 Threonine--tRNA ligase, cytoplasmic;Probable threonine--tRNA ligase 2, cytoplasmic yes no 2 0.0007285 81.431 2 0.39424 0.50464 NaN 1 Median 0.39424 0.50464 NaN 1 0 Median NaN NaN NaN 0 0 Median 5216900 3311500 1905400 5216900 3311500 1905400 0 0 0 8628 1298 8862 31203;31204 46957;46958 46958 2 NASLQDTLEVLQSSYK LTVELEQKIQVLQSKNASLQDTLEVLQSSY ASLQDTLEVLQSSYKNLENELELTKMDKMS K N A Y K N 1 0 1 1 0 2 1 0 0 0 3 1 0 0 0 3 1 0 1 1 0 0 16 0 1794.9 P49454 P49454 2672 2687 CENPF Centromere protein F yes yes 2 1.5915E-13 148.68 4 0.71283 0.92098 8.5905 3 Median 0.71283 0.92098 8.5905 3 0 Median NaN NaN NaN 0 0 Median 35523000 24319000 11204000 35523000 24319000 11204000 0 0 0 8629 1351 8863 31205;31206;31207;31208 46959;46960;46961;46962;46963 46959 5 NASMNTQHGTATEVAVETTTPK DEDYCPRSKKANLGKNASMNTQHGTATEVA HGTATEVAVETTTPKQGQNLWFLCDSQKEL K N A P K Q 3 0 2 0 0 1 2 1 1 0 0 1 1 0 1 1 6 0 0 2 0 0 22 0 2287.075 Q9UIG0 Q9UIG0 964 985 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 1.5053E-17 117.38 7 1 43.134 67.02 NaN 1 Median NaN NaN NaN 0 0 Median 43.134 67.02 NaN 1 0 Median 50082000 701210 49380000 18079000 0 18079000 32002000 701210 31301000 8630 1786 8864;8865 31209;31210;31211;31212;31213;31214;31215;31216 46964;46965;46966;46967;46968;46969;46970;46971 46971 826 8 NASPEDVEYYNCQQELTDDLHK DNYKKKDQETKRWLKNASPEDVEYYNCQQE EYYNCQQELTDDLHKQYQIVERIIAHSNQK K N A H K Q 1 0 2 3 1 2 3 0 1 0 2 1 0 0 1 1 1 0 2 1 0 0 22 0 2667.1395 O14646 O14646 365 386 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 3 1.0824E-14 126.09 4 2 0.59752 0.74484 20.218 6 Median 0.59752 0.74484 13.348 4 0 Median 0.6009 0.89713 33.975 2 0 Median 79958000 48058000 31900000 62536000 37107000 25429000 17421000 10951000 6470600 8631 1169 8866 31217;31218;31219;31220;31221;31222 46972;46973;46974;46975;46976;46977;46978;46979;46980;46981 46973 10 NASTFEDVTQVSSAYQK GFGGKYGVQKDRMDKNASTFEDVTQVSSAY STFEDVTQVSSAYQKTVPVEAVTSKTSNIR K N A Q K T 2 0 1 1 0 2 1 0 0 0 0 1 0 1 0 3 2 0 1 2 0 0 17 0 1873.8694 A0A024R5M3;Q53HG7;Q14247;B3KRK4;B4E358 A0A024R5M3 283 299 CTTN Src substrate cortactin yes no 2 2.3003E-25 172.58 3 0.97888 1.2424 23.825 3 Median 0.97888 1.2424 23.825 3 0 Median NaN NaN NaN 0 0 Median 16754000 8168100 8585700 16754000 8168100 8585700 0 0 0 8632 147 8867 31223;31224;31225 46982;46983;46984;46985;46986;46987;46988 46983 7 NATSVCIATVIGITGAR NDFKVGMKLEARDPRNATSVCIATVIGITG TSVCIATVIGITGARLRLRLDGSDNRNDFW R N A A R L 3 1 1 0 1 0 0 2 0 3 0 0 0 0 0 1 3 0 0 2 0 0 17 0 1702.9036 Q9UQR0;B4DZR9 Q9UQR0 76 92 SCML2 Sex comb on midleg-like protein 2 yes no 2 0.00059868 87.498 2 0.57451 0.79236 5.6235 2 Median 0.57451 0.79236 5.6235 2 0 Median NaN NaN NaN 0 0 Median 7389900 4862300 2527700 7389900 4862300 2527700 0 0 0 8633 1799 8868 31226;31227 46989;46990 46989 2 NAVITVPAYFNDSQR KMKETAENYLGHTAKNAVITVPAYFNDSQR NAVITVPAYFNDSQRQATKDAGQISGLNVL K N A Q R Q 2 1 2 1 0 1 0 0 0 1 0 0 0 1 1 1 1 0 1 2 0 0 15 0 1693.8424 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;B7Z4T3;Q2F839 B7Z4V2 174 188 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 3.2107E-10 137.4 4 2 0.49202 0.65557 134.95 5 Median 0.49202 0.65557 7.5465 3 0 Plateau 4.7826 7.3057 0.89141 2 0 Median 105130000 55198000 49927000 67276000 48320000 18956000 37849000 6878100 30971000 8634 910 8869 31228;31229;31230;31231;31232;31233 46991;46992;46993;46994;46995;46996;46997;46998;46999 46996 9 NAVIVDTTICDPHYNLAR EKFQDKDQVFIFLKKNAVIVDTTICDPHYN IVDTTICDPHYNLARSSRPFERRLYVLNSM K N A A R S 2 1 2 2 1 0 0 0 1 2 1 0 0 0 1 0 2 0 1 2 0 0 18 0 2071.0157 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 999 1016 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 3 5.7416E-07 100.35 4 0.60812 0.83864 12.174 4 Median 0.60812 0.83864 12.174 4 0 Median NaN NaN NaN 0 0 Median 28642000 16849000 11794000 28642000 16849000 11794000 0 0 0 8635 1457 8870 31234;31235;31236;31237 47000;47001;47002;47003;47004;47005 47000 6 NAVSVHSNLNSEAVMK LQQLVSQRHSTPQNKNAVSVHSNLNSEAVM AVSVHSNLNSEAVMKSLTQTFATVEVGRWN K N A M K S 2 0 3 0 0 0 1 0 1 0 1 1 1 0 0 3 0 0 0 3 0 0 16 0 1698.8359 Q5QJE6;J3KP30;B7Z854 Q5QJE6 346 361 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2 0.00048339 46.768 2 0.7331 1.0947 0.25258 2 Median NaN NaN NaN 0 0 Median 0.7331 1.0947 0.25258 2 0 Median 18060000 9949700 8109800 0 0 0 18060000 9949700 8109800 8636 1561 8871 31238;31239 47006;47007 47007 711 2 NAVTQFVSSMSASADVLALAK LVTGVTTVGVAYAAKNAVTQFVSSMSASAD VSSMSASADVLALAKIEIKLSDIPEGKNMA K N A A K I 5 0 1 1 0 1 0 0 0 0 2 1 1 1 0 4 1 0 0 3 0 0 21 0 2109.0776 P47985;P0C7P4 P47985 131 151 UQCRFS1;UQCRFS1P1 Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11;Putative cytochrome b-c1 complex subunit Rieske-like protein 1 yes no 2 1.927E-11 71.531 1 0.41393 0.62459 NaN 1 Median NaN NaN NaN 0 0 Median 0.41393 0.62459 NaN 1 0 Median 17297000 11934000 5363000 0 0 0 17297000 11934000 5363000 8637 1250 8872 31240 47008 47008 492 1 NCAVEFNFGQR EALGGQALYPHVLVKNCAVEFNFGQRAEPY VLVKNCAVEFNFGQRAEPYCSVLPGFTFIQ K N C Q R A 1 1 2 0 1 1 1 1 0 0 0 0 0 2 0 0 0 0 0 1 0 0 11 0 1340.5932 M0R3F1;A8K3W4;A0A024R0J9;A0A0A0MRA5;B7Z4B8;A8K6U7;Q9BUJ2;M0QYZ0 M0R3F1 225 235 HNRNPUL1;HNRPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 2 0.0020625 92.051 4 0.48169 0.6834 22.685 3 Median 0.48169 0.6834 22.685 3 0 Median NaN NaN NaN 0 0 Median 19405000 13440000 5964900 19405000 13440000 5964900 0 0 0 8638 39 8873 31241;31242;31243;31244 47009;47010;47011;47012;47013;47014;47015;47016 47016 8 NCECLSCIDCGK SVKKIQVEKHVSVCRNCECLSCIDCGKDFW VCRNCECLSCIDCGKDFWGDDYKNHVKCIS R N C G K D 0 0 1 1 4 0 1 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 12 0 1514.5622 Q9NX58;A8K3Y5;D6RDJ1 Q9NX58 27 38 LYAR Cell growth-regulating nucleolar protein yes no 2 1.3125E-21 154.84 5 2 0.88723 1.1317 11.769 5 Median 1.0089 1.2183 3.9773 3 0 Plateau 0.6383 0.96222 2.1588 2 0 Median 76899000 43254000 33645000 52818000 29801000 23017000 24081000 13453000 10628000 8639 1766 8874 31245;31246;31247;31248;31249;31250;31251 47017;47018;47019;47020;47021;47022;47023;47024;47025;47026;47027;47028;47029 47023 13 NCGCLGASPNLEQLQEENLK EEEIKSLTAEIDRLKNCGCLGASPNLEQLQ GASPNLEQLQEENLKLKYRLNILRKSLQAE K N C L K L 1 0 3 0 2 2 3 2 0 0 4 1 0 0 1 1 0 0 0 0 0 0 20 0 2273.0416 P54136;E5RJM9;E5RH09 P54136 31 50 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 2.1708E-16 138.31 3 0.62376 0.82096 NaN 1 Median 0.62376 0.82096 NaN 1 0 Median NaN NaN NaN 0 0 Median 3012500 1714300 1298200 3012500 1714300 1298200 0 0 0 8640 1373 8875 31252;31253;31254 47030;47031;47032 47030 3 NCIISLVTQR EPVSLADREVISRLRNCIISLVTQRMMLYD ISRLRNCIISLVTQRMMLYDTSILYCYEAS R N C Q R M 0 1 1 0 1 1 0 0 0 2 1 0 0 0 0 1 1 0 0 1 0 0 10 0 1202.6441 Q13868;A3KFL5;A3KFL2;B3KQW2;A2VCR1 Q13868 239 248 EXOSC2 Exosome complex component RRP4 yes no 2 0.0074805 86.67 1 1 0.54646 0.75471 NaN 1 Median 0.54646 0.75471 NaN 1 0 Median NaN NaN NaN 0 0 Median 8826600 6696700 2129800 5792500 3662700 2129800 3034000 3034000 0 8641 1478 8876 31255;31256 47033;47034 47033 2 NCISTVVHQGLIR VKVFLALAAKGPVLRNCISTVVHQGLIRIC LRNCISTVVHQGLIRICSKPVVLPKGPESE R N C I R I 0 1 1 0 1 1 0 1 1 2 1 0 0 0 0 1 1 0 0 2 0 0 13 0 1495.7929 P78527;B4DL41 P78527 477 489 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2;3 0.00023923 105.17 5 2 0.4557 0.58714 14.762 5 Median 0.41486 0.5735 16.941 4 0 Median 0.4557 0.58714 NaN 1 0 Median 28365000 15478000 12887000 22199000 13459000 8740100 6166600 2019800 4146800 8642 1427 8877 31257;31258;31259;31260;31261;31262;31263 47035;47036;47037;47038;47039;47040;47041;47042;47043 47038 9 NCIVLIDSTPYR NASNNELVRTKTLVKNCIVLIDSTPYRQWY LVKNCIVLIDSTPYRQWYESHYALPLGRKK K N C Y R Q 0 1 1 1 1 0 0 0 0 2 1 0 0 0 1 1 1 0 1 1 0 0 12 0 1449.7286 Q5JR94;P62241;Q5JR95 Q5JR94 99 110 RPS8 40S ribosomal protein S8 yes no 2 3.291E-32 213.8 8 2 0.83758 1.1568 20.9 5 Median 0.83758 1.1568 20.9 5 0 Median NaN NaN NaN 0 0 Median 2119400000 1157800000 961550000 2015300000 1068500000 946800000 104090000 89336000 14752000 8643 1399 8878 31264;31265;31266;31267;31268;31269;31270;31271;31272;31273 47044;47045;47046;47047;47048;47049;47050;47051;47052;47053;47054;47055;47056;47057;47058;47059;47060;47061;47062;47063 47048 20 NCLALADDK WGADKCEELLEKTVKNCLALADDKKLKSIA LEKTVKNCLALADDKKLKSIAFPSIGSGRN K N C D K K 2 0 1 2 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1018.4753 O75367;Q59FH0;B4DJC3 O75367 296 304 H2AFY Core histone macro-H2A.1;Histone H2A yes no 1;2 0.00011465 144.77 8 2 0.8207 1.0847 20.158 7 Median 0.8311 1.1001 19.803 5 0 Median 0.5818 0.92112 4.9957 2 0 Median 1531800000 902400000 629450000 1343200000 782750000 560430000 188670000 119650000 69021000 8644 1198 8879 31274;31275;31276;31277;31278;31279;31280;31281;31282;31283 47064;47065;47066;47067;47068;47069;47070;47071;47072;47073;47074;47075;47076;47077;47078;47079 47072 16 NCLALADDKK WGADKCEELLEKTVKNCLALADDKKLKSIA EKTVKNCLALADDKKLKSIAFPSIGSGRNG K N C K K L 2 0 1 2 1 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 10 1 1146.5703 O75367;Q59FH0;B4DJC3 O75367 296 305 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2;3 1.0204E-16 169.41 7 4 0.75243 0.94441 8.2118 11 Median 0.79141 0.96274 7.3075 7 0 Median 0.56171 0.89874 8.5472 4 0 Median 1869400000 1055300000 814140000 1613900000 898630000 715300000 255510000 156660000 98843000 8645 1198 8880 31284;31285;31286;31287;31288;31289;31290;31291;31292;31293;31294 47080;47081;47082;47083;47084;47085;47086;47087;47088;47089;47090;47091;47092;47093;47094;47095;47096;47097;47098;47099 47091 20 NCLTNFHGMDLTR AFRKFKLITEDVQGKNCLTNFHGMDLTRDK GKNCLTNFHGMDLTRDKMCSMVKKWQTMIE K N C T R D 0 1 2 1 1 0 0 1 1 0 2 0 1 1 0 0 2 0 0 0 0 0 13 0 1577.7079 Q6NXR8;P61247;A8K4W0;B7Z3M5;H0Y8L7;E9PFI5;D6RG13;D6RAT0;D6RB09;D6RAS7;D6RED7 Q6NXR8 95 107 RPS3A 40S ribosomal protein S3a yes no 3 0.00014482 65.043 4 0.78893 1.0564 10.975 4 Median 0.78893 1.0564 10.975 4 0 Median NaN NaN NaN 0 0 Median 78628000 41114000 37514000 78628000 41114000 37514000 0 0 0 8646 1393 8881;8882 31295;31296;31297;31298 47100;47101;47102;47103;47104;47105 47105 608 6 NCPHVVVGTPGR FGGLSIKKDEEVLKKNCPHVVVGTPGRILA LKKNCPHVVVGTPGRILALVRNRSFSLKNV K N C G R I 0 1 1 0 1 0 0 2 1 0 0 0 0 0 2 0 1 0 0 3 0 0 12 0 1291.6455 O00148;B4DX78;K7EQN7;A0A024R7H0;K7EPJ3;A0A0D9SEM9 O00148 163 174 DDX39A;DDX39 ATP-dependent RNA helicase DDX39A yes no 2;3 0.0050044 55.899 1 1 0.38592 0.52495 NaN 1 Median 0.38592 0.52495 NaN 1 0 Median NaN NaN NaN 0 0 Median 12163000 6932900 5230500 10273000 6932900 3340400 1890100 0 1890100 8647 1164 8883 31299;31300 47106;47107;47108 47107 3 NCQHANAERPTVAR ISTSTSLPRGILKMKNCQHANAERPTVARI KNCQHANAERPTVARISSVQFHPGAQIVMV K N C A R I 3 2 2 0 1 1 1 0 1 0 0 0 0 0 1 0 1 0 0 1 0 0 14 1 1622.7696 Q9Y5J1;B2RAX6;F6VJE8 Q9Y5J1 240 253 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 3;4 3.2336E-05 75.462 5 1 0.9435 1.306 19.331 6 Median 0.95473 1.3213 7.9217 5 0 Median 0.63373 0.84326 NaN 1 0 Median 74652000 39004000 35648000 71010000 36756000 34254000 3641900 2248200 1393700 8648 1830 8884 31301;31302;31303;31304;31305;31306 47109;47110;47111;47112;47113;47114;47115;47116 47113 7 NCSSFLIK ______________________________ LQWMVVRNCSSFLIKRNKQTYSTEPNNLKA R N C I K R 0 0 1 0 1 0 0 0 0 1 1 1 0 1 0 2 0 0 0 0 0 0 8 0 967.4797 P46779;H0YKD8;H0YMF4;Q59F34;H0YLP6 P46779 12 19 RPL28 60S ribosomal protein L28 yes no 2 0.0055553 89.296 5 1 0.70091 0.91518 14.439 4 Median 0.70224 0.91623 5.0775 3 0 Median 0.47163 0.71467 NaN 1 0 Median 430280000 318040000 112240000 416250000 309010000 107240000 14029000 9029500 4999200 8649 1346 8885 31307;31308;31309;31310;31311;31312 47117;47118;47119;47120;47121;47122;47123 47119 7 NCSVTGIDDLEQIPADTTDINHLETQPVSSK RCSLGIFLPRLPNKRNCSVTGIDDLEQIPA TTDINHLETQPVSSKDSGIGSVAGKLNLSP R N C S K D 1 0 2 4 1 2 2 1 1 3 2 1 0 0 2 3 4 0 0 2 0 0 31 0 3396.5991 Q8NG31;H0YCZ2;E9PPJ1 Q8NG31 1688 1718 CASC5 Protein CASC5 yes no 3 0.00016121 48.18 2 0.85981 1.1058 42.195 2 Median 0.85981 1.1058 42.195 2 0 Median NaN NaN NaN 0 0 Median 8214100 5572100 2642000 8214100 5572100 2642000 0 0 0 8650 1656 8886 31313;31314 47124;47125;47126 47124 3 NCVFLDDKK TSCTSNYHFMCSRAKNCVFLDDKKVYCQRH MCSRAKNCVFLDDKKVYCQRHRDLIKGEVV K N C K K V 0 0 1 2 1 0 0 0 0 0 1 2 0 1 0 0 0 0 0 1 0 0 9 1 1137.5488 Q03164 Q03164 1963 1971 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 0.034554 46.158 1 1.3806 1.7129 NaN 1 Median 1.3806 1.7129 NaN 1 0 Median NaN NaN NaN 0 0 Median 9283700 4062200 5221500 9283700 4062200 5221500 0 0 0 8651 1438 8887 31315 47127 47127 1 NDASEVVLAGER SSVPSEDEWYCPECRNDASEVVLAGERLRE ECRNDASEVVLAGERLRESKKKAKMASATS R N D E R L 2 1 1 1 0 0 2 1 0 0 1 0 0 0 0 1 0 0 0 2 0 0 12 0 1258.6153 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9 A0A087WVR3 378 389 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 9.8987E-07 126.71 4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8700200 0 8700200 5028800 0 5028800 3671300 0 3671300 8652 337 8888 31316;31317;31318;31319;31320;31321 47128;47129;47130;47131;47132;47133 47130 6 NDCTQLCLSLNEER MAELEKLEEAFSRSKNDCTQLCLSLNEERN KNDCTQLCLSLNEERNLTKKISSELEMLRV K N D E R N 0 1 2 1 2 1 2 0 0 0 3 0 0 0 0 1 1 0 0 0 0 0 14 0 1750.7614 A0A024RAC0;Q86V48;E5RFK8;Q05DE3 A0A024RAC0 132 145 LUZP1 Leucine zipper protein 1 yes no 2 5.6337E-15 160.22 3 1.5048 2.0738 17.915 3 Plateau 1.5048 2.0738 17.915 3 0 Plateau NaN NaN NaN 0 0 Median 8971300 3936100 5035200 8971300 3936100 5035200 0 0 0 8653 238 8889 31322;31323;31324 47134;47135;47136;47137;47138;47139;47140 47140 7 NDFTEEEEAQVR KGKTPEEIRKTFNIKNDFTEEEEAQVRKEN NIKNDFTEEEEAQVRKENQWCEEK______ K N D V R K 1 1 1 1 0 1 4 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 12 0 1465.6321 E5RJR5;P63208 E5RJR5 143 154 SKP1 S-phase kinase-associated protein 1 yes no 2 2.828E-16 176.48 4 2 0.4638 0.6732 14.251 6 Median 0.4694 0.64397 17.955 4 0 Median 0.4638 0.6732 3.755 2 0 Median 43106000 28166000 14940000 17455000 10807000 6647400 25651000 17359000 8292500 8654 1007 8890 31325;31326;31327;31328;31329;31330 47141;47142;47143;47144;47145;47146;47147;47148;47149 47142 9 NDFTEEEEAQVRK KGKTPEEIRKTFNIKNDFTEEEEAQVRKEN IKNDFTEEEEAQVRKENQWCEEK_______ K N D R K E 1 1 1 1 0 1 4 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 13 1 1593.7271 E5RJR5;P63208 E5RJR5 143 155 SKP1 S-phase kinase-associated protein 1 yes no 2;3 4.362E-20 186.74 6 1 0.53166 0.74381 21.485 4 Median 0.62983 0.81759 25.957 3 0 Median 0.4488 0.67669 NaN 1 0 Median 43552000 31296000 12256000 35103000 25584000 9518700 8449300 5711900 2737500 8655 1007 8891 31331;31332;31333;31334;31335;31336;31337 47150;47151;47152;47153;47154;47155;47156;47157;47158 47150 9 NDGAAILAAVSSIAQK AKKPMVVLGSSALQRNDGAAILAAVSSIAQ DGAAILAAVSSIAQKIRMTSGVTGDWKVMN R N D Q K I 5 0 1 1 0 1 0 1 0 2 1 1 0 0 0 2 0 0 0 1 0 0 16 0 1527.8257 B4DJ81;E5KRK5;P28331;Q9P1A0 B4DJ81 368 383 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 2 3.6421E-08 115.24 2 0.51898 0.64654 NaN 1 Median 0.51898 0.64654 NaN 1 0 Median NaN NaN NaN 0 0 Median 1544200 1012100 532080 1544200 1012100 532080 0 0 0 8656 815 8892 31338;31339 47159;47160;47161 47160 3 NDGYVHIHPSSVNYQVR VRMQPKSAELKFVTKNDGYVHIHPSSVNYQ GYVHIHPSSVNYQVRHFDSPYLLYHEKIKT K N D V R H 0 1 2 1 0 1 0 1 2 1 0 0 0 0 1 2 0 0 2 3 0 0 17 0 1983.9551 Q6P158;Q8N4U2 Q6P158 1258 1274 DHX57 Putative ATP-dependent RNA helicase DHX57 yes no 3 0.0040355 80.738 1 0.5125 0.69723 NaN 1 Median 0.5125 0.69723 NaN 1 0 Median NaN NaN NaN 0 0 Median 5585000 3062600 2522400 5585000 3062600 2522400 0 0 0 8657 1589 8893 31340 47162 47162 0 NDIASHPPVEGSYAPR VETGTQLEKLMENMRNDIASHPPVEGSYAP DIASHPPVEGSYAPRRGEFCIAKFVDGEWY R N D P R R 2 1 1 1 0 0 1 1 1 1 0 0 0 0 3 2 0 0 1 1 0 0 16 0 1708.8169 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B4E299;B3KU67;H7C597 A0A140VK49 716 731 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.018188 85.45 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8658 508 8894 31341 47163 47163 1 NDIFVFLLSTR KISERRDMVADFQNRNDIFVFLLSTRAGGL FQNRNDIFVFLLSTRAGGLGINLTAADTVI R N D T R A 0 1 1 1 0 0 0 0 0 1 2 0 0 2 0 1 1 0 0 1 0 0 11 0 1323.7187 A0A024R9R7;Q9ULG1;A8K2V6 A0A024R9R7 1167 1177 INOC1;INO80 DNA helicase INO80 yes no 2 0.0024358 77.379 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 823700 823700 0 823700 823700 0 0 0 0 8659 230 8895 31342 47164 47164 1 NDIHEDNLLECPPEELAR VIQNEQPHAKCPLCRNDIHEDNLLECPPEE HEDNLLECPPEELARDSEKKSDMEWTSSSK R N D A R D 1 1 2 2 1 0 4 0 1 1 3 0 0 0 2 0 0 0 0 0 0 0 18 0 2162.9902 Q59GQ7;A0A0C4DGA6;Q14527;H7C5K0 Q59GQ7 802 819 HLTF Helicase-like transcription factor yes no 3 4.2371E-07 103.75 3 0.51024 0.70768 8.4264 3 Median 0.51024 0.70768 8.4264 3 0 Median NaN NaN NaN 0 0 Median 28037000 17721000 10316000 28037000 17721000 10316000 0 0 0 8660 425 8896 31343;31344;31345 47165;47166;47167;47168;47169 47165 5 NDIHLDADDPNSADK KNDPEKQNENTRKEKNDIHLDADDPNSADK NDIHLDADDPNSADKHRNDCPNWITEKINS K N D D K H 2 0 2 5 0 0 0 0 1 1 1 1 0 0 1 1 0 0 0 0 0 0 15 0 1638.7122 B2RA91;F8VXG7;Q99590 B2RA91 686 700 SCAF11 Protein SCAF11 yes no 2 0.032813 28.327 1 0.69345 0.92611 NaN 1 Median NaN NaN NaN 0 0 Median 0.69345 0.92611 NaN 1 0 Median 1451300 738670 712640 0 0 0 1451300 738670 712640 8661 722 8897 31346 47170 47170 1 NDINVVQAFEMLASR WCREKDIPYFEVSAKNDINVVQAFEMLASR NDINVVQAFEMLASRALSRPSLSRERKSRE K N D S R A 2 1 2 1 0 1 1 0 0 1 1 0 1 1 0 1 0 0 0 2 0 0 15 0 1705.8458 A0A096LPF0;Q96AH8 A0A096LPF0 58 72 RAB7B Ras-related protein Rab-7b yes no 2 0.001645 44.765 1 0.69724 0.93214 NaN 1 Median 0.69724 0.93214 NaN 1 0 Median NaN NaN NaN 0 0 Median 20931000 11591000 9340000 20931000 11591000 9340000 0 0 0 8662 384 8898 31347 47171;47172 47172 2 NDISLILNEYAEFNK HLNKLKYNSTVKESRNDISLILNEYAEFNK NDISLILNEYAEFNKVMKNSNQFIFQDKEL R N D N K V 1 0 3 1 0 0 2 0 0 2 2 1 0 1 0 1 0 0 1 0 0 0 15 0 1781.8836 Q5VWN6;Q6IPC8 Q5VWN6 2106 2120 FAM208B;C10orf18 Protein FAM208B yes no 2 3.9212E-06 145.31 1 0.60732 0.79644 NaN 1 Median 0.60732 0.79644 NaN 1 0 Median NaN NaN NaN 0 0 Median 1939300 1088900 850470 1939300 1088900 850470 0 0 0 8663 1579 8899 31348 47173 47173 1 NDKPSPNSENEQNSVTLEVLLVK LSAHLQLTFTGFFHKNDKPSPNSENEQNSV ENEQNSVTLEVLLVKVCHKKRKDVSCPIRQ K N D V K V 0 0 4 1 0 1 3 0 0 0 3 2 0 0 2 3 1 0 0 3 0 0 23 1 2553.2922 J3QQW9;Q15022;A8K1U9 J3QQW9 145 167 SUZ12 Polycomb protein SUZ12 yes no 3 7.4475E-06 51.234 1 0.88445 1.1011 NaN 1 Median 0.88445 1.1011 NaN 1 0 Median NaN NaN NaN 0 0 Median 18622000 11464000 7158300 18622000 11464000 7158300 0 0 0 8664 1143 8900 31349 47174 47174 1 NDLAVVDVR SAPELKTGISDVFAKNDLAVVDVRIGMTRK SDVFAKNDLAVVDVRIGMTRKFGYVDFESA K N D V R I 1 1 1 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 3 0 0 9 0 999.53491 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99 B3KTP9 257 265 NCL Nucleolin yes no 2 0.0030676 88.177 2 2 0.71058 1.0353 6.926 4 Median 0.81426 1.1046 6.8556 2 0 Median 0.63945 1.0033 2.1232 2 0 Median 133500000 78958000 54540000 73780000 43378000 30402000 59718000 35580000 24138000 8665 119 8901 31350;31351;31352;31353 47175;47176;47177;47178;47179;47180;47181 47177 7 NDLSPASSGNAVYDFFIGR VLSVYLYMRSLKAPRNDLSPASSGNAVYDF PASSGNAVYDFFIGRELNPRIGTFDLKYFC R N D G R E 2 1 2 2 0 0 0 2 0 1 1 0 0 2 1 3 0 0 1 1 0 0 19 0 2028.9541 A0A024R3R5 A0A024R3R5 354 372 LBR no no 2 3.0893E-19 109 2 0.54693 0.73115 2.2266 2 Median 0.54693 0.73115 2.2266 2 0 Median NaN NaN NaN 0 0 Median 34145000 21719000 12426000 34145000 21719000 12426000 0 0 0 8666 106 8902 31354;31355 47182;47183 47183 2 NDLYYNTITNFSEK SRENSKELPPFWEQRNDLYYNTITNFSEKD RNDLYYNTITNFSEKDRPENVHGGILADDM R N D E K D 0 0 3 1 0 0 1 0 0 1 1 1 0 1 0 1 2 0 2 0 0 0 14 0 1720.7944 Q59GQ7;A0A0C4DGA6;Q14527;A8K5B6;Q05DF7;Q05DQ5;Q05BZ6 Q59GQ7 268 281 HLTF Helicase-like transcription factor yes no 2 0.00022798 83.617 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4937800 4937800 0 4937800 4937800 0 0 0 0 8667 425 8903 31356;31357 47184;47185 47184 2 NDPEITINVPQSSK ELAKTPQKSVSFSLKNDPEITINVPQSSKG KNDPEITINVPQSSKGHSASDKVQPKNNDK K N D S K G 0 0 2 1 0 1 1 0 0 2 0 1 0 0 2 2 1 0 0 1 0 0 14 0 1540.7733 A0A024R411;Q13416;B4DYU9 A0A024R411 127 140 ORC2L;ORC2 Origin recognition complex subunit 2 yes no 2 4.0105E-05 110.92 1 1 0.36154 0.46819 NaN 1 Median 0.36154 0.46819 NaN 1 0 Median NaN NaN NaN 0 0 Median 5434300 4726400 707870 2137300 1429400 707870 3297000 3297000 0 8668 114 8904 31358;31359 47186;47187;47188 47186 3 NDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK SVKDVRRGNVAGDSKNDPPMEAAGFTAQVI YAPVLDCHTAHIACKFAELKEKIDRRSGKK K N D C K F 7 0 2 2 2 2 1 3 3 4 2 1 1 1 4 1 2 0 1 2 0 0 41 0 4384.1191 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;P68104;A8K9C4;Q96RE1;A0A087WVQ9;Q53GE9;Q53GA1;Q53G85;B4DV42;Q8IUB0;Q504Z0;Q53HR1;B4DNE0;Q9NZS6;A0A087WV01;Q9H2I7;Q6P4C9;B4E2C5;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q96EB3 Q6IPT9 331 371 EEF1A1;EEF1A1L14 Elongation factor 1-alpha;Elongation factor 1-alpha 1 yes no 4 0.013427 29.372 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3371100 2352700 1018400 3371100 2352700 1018400 0 0 0 8669 1421 8905 31360 47189 47189 1 NDQCYDDIR VRQSKFRHVFGQAVKNDQCYDDIRVSRVTW FGQAVKNDQCYDDIRVSRVTWDSSFCAVNP K N D I R V 0 1 1 3 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 9 0 1197.4721 B4DMH3;Q53G58;B3KN06;A0A024RBI5;Q59EA2;Q9ULV4;F8W1H8;F8VUX3;F8VSA4;F8VRE9;F8VTT6;F8VVB7 B4DMH3 20 28 CORO1C Coronin;Coronin-1C yes no 2 1.0781E-08 142.04 2 1.3089 1.7714 0.5298 2 Median 1.3089 1.7714 0.5298 2 0 Median NaN NaN NaN 0 0 Median 117240000 52142000 65099000 117240000 52142000 65099000 0 0 0 8670 274 8906 31361;31362 47190;47191;47192 47190 3 NDQCYEDIR VRQSKFRHVFGQPVKNDQCYEDIRVSRVTW FGQPVKNDQCYEDIRVSRVTWDSTFCAVNP K N D I R V 0 1 1 2 1 1 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 9 0 1211.4877 A0A024R5K1;Q9BR76;A0A087WW53;F5H390;Q59F81;B4DIU2;F5H0D2 A0A024R5K1 22 30 CORO1B Coronin;Coronin-1B yes no 2 1.8791E-05 138.06 5 0.87322 1.1597 22.253 3 Median 0.87322 1.1597 22.253 3 0 Median NaN NaN NaN 0 0 Median 22752000 10866000 11886000 22752000 10866000 11886000 0 0 0 8671 145 8907 31363;31364;31365;31366;31367 47193;47194;47195;47196;47197;47198 47197 6 NDQDTWDYTNPNLSGQGDPGSNPNKR LKIEYAKPTRLNVFKNDQDTWDYTNPNLSG NLSGQGDPGSNPNKRQRQPPLLGDHPAEYG K N D K R Q 0 1 5 4 0 2 0 3 0 0 1 1 0 0 3 2 2 1 1 0 0 0 26 1 2889.255 B2R959;Q6NTA2;P14866;M0QXS5 B2R959 247 272 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 3 0.045122 17.647 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1541400 0 1541400 0 0 0 1541400 0 1541400 8672 719 8908 31368 47199 47199 1 NDRDQHTDSTQSANSSPDEDTEVK KEALSFPHLHLRGQRNDRDQHTDSTQSANS TQSANSSPDEDTEVKTLKLSGMSNRSSIIN R N D V K T 1 1 2 5 0 2 2 0 1 0 0 1 0 0 1 4 3 0 0 1 0 0 24 1 2675.1179 Q03164 Q03164 2377 2400 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 3 0.0065473 74.505 2 0.8381 1.0273 NaN 1 Median 0.8381 1.0273 NaN 1 0 Median NaN NaN NaN 0 0 Median 426570 207520 219050 426570 207520 219050 0 0 0 8673 1438 8909 31369;31370 47200;47201 47200 2 NDSFTTCIELGK LMNNHQGIKAEIDARNDSFTTCIELGKSLL DARNDSFTTCIELGKSLLARKHYASEEIKE R N D G K S 0 0 1 1 1 0 1 1 0 1 1 1 0 1 0 1 2 0 0 0 0 0 12 0 1383.634 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24 B2ZZ89 1964 1975 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 1.9267E-05 92.866 3 0.74189 0.90976 20.856 3 Median 0.74189 0.90976 20.856 3 0 Median NaN NaN NaN 0 0 Median 38246000 20410000 17836000 38246000 20410000 17836000 0 0 0 8674 346 8910 31371;31372;31373 47202;47203;47204;47205 47205 4 NDTGFQEGYPYPYPHTLYLLDK SPIIDLHECNIYDVKNDTGFQEGYPYPYPH GYPYPYPHTLYLLDKANLRPHRLQPDQLRA K N D D K A 0 0 1 2 0 1 1 2 1 0 3 1 0 1 3 0 2 0 4 0 0 0 22 0 2630.2329 H0Y4J2;Q6TGK8;A6NHR2;S4R369;Q9BZE1 H0Y4J2 60 81 MRPL37 39S ribosomal protein L37, mitochondrial yes no 3 0.0132 41.292 2 0.33611 0.43049 12.695 2 Median 0.33611 0.43049 12.695 2 0 Median NaN NaN NaN 0 0 Median 8728800 5958200 2770700 8728800 5958200 2770700 0 0 0 8675 567 8911 31374;31375 47206;47207 47206 2 NDVFYLQPER YEFYLSKCSESVKQRNDVFYLQPERSCVPN SVKQRNDVFYLQPERSCVPNSPMWYSTFPI R N D E R S 0 1 1 1 0 1 1 0 0 0 1 0 0 1 1 0 0 0 1 1 0 0 10 0 1279.6197 Q5VZL5;H7C1I7;A6NHN7;A6NHB5;Q14202 Q5VZL5 1488 1497 ZMYM4;ZMYM3 Zinc finger MYM-type protein 4;Zinc finger MYM-type protein 3 no no 2 0.015401 49.35 2 1.0936 1.4422 7.4932 2 Median NaN NaN NaN 0 0 Median 1.0936 1.4422 7.4932 2 0 Median 10341000 5419400 4922100 0 0 0 10341000 5419400 4922100 8676 1580;565 8912 31376;31377 47208;47209 47208 2 NDWLDLR LQGSEEPVFRAKNVRNDWLDLRVPIWDQDI VFRAKNVRNDWLDLRVPIWDQDIQFLPGSQ R N D L R V 0 1 1 2 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 7 0 930.45593 Q6RFH5;E9PS41 Q6RFH5 175 181 WDR74 WD repeat-containing protein 74 yes no 2 0.031185 62.464 1 0.68474 0.97841 NaN 1 Median NaN NaN NaN 0 0 Median 0.68474 0.97841 NaN 1 0 Median 9038700 4973200 4065600 0 0 0 9038700 4973200 4065600 8677 1598 8913 31378 47210;47211 47210 2 NEAPEGNLGDFAEFQR IYGERLYETSYRLSKNEAPEGNLGDFAEFQ EAPEGNLGDFAEFQRRHSMQTPVRMEWSGI K N E Q R R 2 1 2 1 0 1 3 2 0 0 1 0 0 2 1 0 0 0 0 0 0 0 16 0 1792.8016 Q9UKN8;Q05CN7 Q9UKN8 226 241 GTF3C4 General transcription factor 3C polypeptide 4 yes no 2 6.8597E-13 128.68 4 1 0.53536 0.73974 24.848 5 Median 0.53381 0.72135 10.551 4 0 Median 0.88716 1.2264 NaN 1 0 Median 44837000 27652000 17186000 34537000 21345000 13192000 10301000 6306900 3994000 8678 1789 8914 31379;31380;31381;31382;31383 47212;47213;47214;47215;47216;47217;47218;47219 47215 8 NEAQEEIYKK QGKDRDLVTEDTGVRNEAQEEIYKKGQSKR DTGVRNEAQEEIYKKGQSKRIWGELYKVID R N E K K G 1 0 1 0 0 1 3 0 0 1 0 2 0 0 0 0 0 0 1 0 0 0 10 1 1250.6143 Q5T0F3;Q13823;B4DPI9 Q5T0F3 191 200 GNL2 Nucleolar GTP-binding protein 2 yes no 2 0.040155 49.16 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 959170 0 959170 0 0 0 959170 0 959170 8679 1477 8915 31384 47220 47220 1 NEATVETLTETK KIGMRGKPKVIDLTRNEATVETLTETKIHC LTRNEATVETLTETKIHCETDEKDFYLYYF R N E T K I 1 0 1 0 0 0 3 0 0 0 1 1 0 0 0 0 4 0 0 1 0 0 12 0 1334.6565 B4DKV2;G3V529;Q9GZR7;F5GYL3;B4E300;B4DM03;A0A087WXU8;Q7Z4X3;Q7Z4W0;B4DGI6;Q59FS7 B4DKV2 463 474 DDX24 ATP-dependent RNA helicase DDX24 yes no 2 0.0005961 93.561 4 1 0.83381 1.0962 10.132 5 Median 0.85007 1.0879 11.681 4 0 Median 0.72462 1.0962 NaN 1 0 Median 36859000 20055000 16804000 27856000 14673000 13183000 9003600 5382600 3621000 8680 822 8916 31385;31386;31387;31388;31389 47221;47222;47223;47224;47225;47226;47227;47228;47229 47226 8 NEDEEEEEEEKDEAEDLLGR TSVKKKVKNVGIFLKNEDEEEEEEEKDEAE EEEEEKDEAEDLLGRGSRAALLTERTRNEM K N E G R G 1 1 1 3 0 0 10 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 20 1 2405.983 Q9Y5B9 Q9Y5B9 434 453 SUPT16H FACT complex subunit SPT16 yes yes 3 8.8294E-63 208.13 5 2 0.77639 1.0812 12.776 7 Median 0.79166 1.0393 12.827 5 0 Median 0.72447 1.2796 0.57209 2 0 Median 1686700000 939900000 746820000 1087000000 605940000 481030000 599740000 333960000 265780000 8681 1829 8917 31390;31391;31392;31393;31394;31395;31396 47230;47231;47232;47233;47234;47235;47236;47237;47238;47239;47240;47241;47242;47243;47244;47245;47246;47247;47248;47249;47250;47251 47232 22 NEDITEPQSILAAAEK LEKASRELWMRVWSRNEDITEPQSILAAAE EDITEPQSILAAAEKAGMSAEQAQGLLEKI R N E E K A 3 0 1 1 0 1 3 0 0 2 1 1 0 0 1 1 1 0 0 0 0 0 16 0 1727.8578 Q2NLC8;E9PFN5;Q6FII1;Q9Y2Q3 Q2NLC8 76 91 GSTK1;LOC51064 Glutathione S-transferase kappa 1 yes no 2 1.9896E-10 136.24 4 0.31824 0.40315 14.767 2 Median 0.31824 0.40315 14.767 2 0 Median NaN NaN NaN 0 0 Median 23834000 20384000 3449900 23834000 20384000 3449900 0 0 0 8682 1025 8918 31397;31398;31399;31400 47252;47253;47254;47255;47256 47252 5 NEDRGEEEAESSISSTSNEQLK LHQRFLREGRFWKSKNEDRGEEEAESSISS EAESSISSTSNEQLKVTQEPRAKKGRRNQS K N E L K V 1 1 2 1 0 1 6 1 0 1 1 1 0 0 0 5 1 0 0 0 0 0 22 1 2438.0681 Q5BJG6;B7Z3W2;J3QKD2;Q15326;Q6PJR5;A0A0A0MRY2;B0QZE2;B7Z2J6;E7ENI9;Q5UGI2;B7Z3Z1 Q5BJG6 273 294 ZMYND11 Zinc finger MYND domain-containing protein 11 yes no 3 2.1942E-13 119.72 3 1 0.70751 1.1019 34.039 3 Median 0.84531 1.1186 48.123 2 0 Median 0.70751 1.1019 NaN 1 0 Median 27630000 13432000 14199000 16257000 6842500 9414700 11373000 6589300 4783800 8683 906 8919 31401;31402;31403;31404 47257;47258;47259;47260;47261 47257 5 NEEDAAELVALAQAVNAR LHQFCAQHGRPPRPRNEEDAAELVALAQAV DAAELVALAQAVNARALPAVQQNNLDEDLI R N E A R A 6 1 2 1 0 1 3 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 18 0 1882.9385 A0A024R1A3;P22314 A0A024R1A3 351 368 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 6.2871E-62 214.18 3 0.59625 0.83875 7.5416 3 Median 0.59625 0.83875 7.5416 3 0 Median NaN NaN NaN 0 0 Median 15567000 9144700 6422000 15567000 9144700 6422000 0 0 0 8684 55 8920 31405;31406;31407 47262;47263;47264 47262 3 NEEPSEEEIDAPK IEKKVVSSKTKKVTKNEEPSEEEIDAPKPK TKNEEPSEEEIDAPKPKKMKKEKEMNGETR K N E P K P 1 0 1 1 0 0 5 0 0 1 0 1 0 0 2 1 0 0 0 0 0 0 13 0 1485.6471 Q9NR30 Q9NR30 117 129 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.0012337 103.21 2 2 0.46631 0.69688 6.0202 2 Median NaN NaN NaN 0 0 Median 0.46631 0.69688 6.0202 2 0 Median 18769000 13239000 5530600 2007800 2007800 0 16762000 11231000 5530600 8685 1756 8921 31408;31409;31410;31411 47265;47266;47267;47268;47269;47270 47266 6 NEEPSEEEIDAPKPK IEKKVVSSKTKKVTKNEEPSEEEIDAPKPK NEEPSEEEIDAPKPKKMKKEKEMNGETREK K N E P K K 1 0 1 1 0 0 5 0 0 1 0 2 0 0 3 1 0 0 0 0 0 0 15 1 1710.7948 Q9NR30 Q9NR30 117 131 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 5.3876E-21 187.62 7 4 0.74515 0.92776 14.462 11 Median 0.79961 0.97889 8.8972 7 0 Median 0.45173 0.73025 2.2239 4 0 Median 459360000 290500000 168860000 159560000 87885000 71676000 299800000 202620000 97183000 8686 1756 8922 31412;31413;31414;31415;31416;31417;31418;31419;31420;31421;31422 47271;47272;47273;47274;47275;47276;47277;47278;47279;47280;47281;47282;47283;47284;47285;47286;47287;47288;47289 47277 19 NEESVLLFTQIK FYVPSGNYYNIKNLRNEESVLLFTQIKR__ NLRNEESVLLFTQIKR______________ R N E I K R 0 0 1 0 0 1 2 0 0 1 2 1 0 1 0 1 1 0 0 1 0 0 12 0 1419.7609 Q03188 Q03188 931 942 CENPC Centromere protein C yes yes 2 5.1496E-05 133.05 3 1 0.77796 1.0578 12.026 4 Median 0.81618 1.0308 13.098 3 0 Median 0.74153 1.0964 NaN 1 0 Median 27321000 15322000 11998000 17507000 9785300 7721700 9813700 5537200 4276600 8687 1439 8923 31423;31424;31425;31426 47290;47291;47292;47293;47294;47295;47296 47290 7 NEETLREEEEEKK SNKEIMEHIRKILGKNEETLREEEEEKKQL GKNEETLREEEEEKKQLSHPANFGPRKYCL K N E K K Q 0 1 1 0 0 0 7 0 0 0 1 2 0 0 0 0 1 0 0 0 0 0 13 2 1661.7744 P82663 P82663 109 121 MRPS25 28S ribosomal protein S25, mitochondrial yes yes 3 0.019798 38.189 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8688 1429 8924 31427 47297 47297 1 NEFISEYCGELISQDEADRR DVAGWGTFIKESVQKNEFISEYCGELISQD EYCGELISQDEADRRGKVYDKYMSSFLFNL K N E R R G 1 2 1 2 1 1 4 1 0 2 1 0 0 1 0 2 0 0 1 0 0 0 20 1 2430.0758 A0A0A0MSY9;Q92800 A0A0A0MSY9 627 646 EZH1 Histone-lysine N-methyltransferase EZH1 yes no 3 1.2961E-10 99.663 4 2 0.77034 1.083 5.4755 6 Median 0.79765 1.0855 4.5942 4 0 Median 0.71787 1.0231 8.0163 2 0 Median 87498000 47908000 39590000 68739000 36914000 31825000 18759000 10994000 7765200 8689 401 8925 31428;31429;31430;31431;31432;31433 47298;47299;47300;47301;47302;47303;47304;47305;47306;47307;47308;47309;47310;47311;47312 47305 15 NEGNIFPNPEATFVK YLRINFYCPGSALGRNEGNIFPNPEATFVK NEGNIFPNPEATFVKEITYRASNIKAPGEQ R N E V K E 1 0 3 0 0 0 2 1 0 1 0 1 0 2 2 0 1 0 0 1 0 0 15 0 1675.8206 Q9Y5B9 Q9Y5B9 582 596 SUPT16H FACT complex subunit SPT16 yes yes 2 4.2348E-15 142.12 4 2 0.72114 0.96666 2.1578 6 Median 0.7398 0.96954 2.7478 4 0 Median 0.61249 0.96666 0.61308 2 0 Median 1029900000 608330000 421550000 635490000 359470000 276020000 394400000 248860000 145530000 8690 1829 8926 31434;31435;31436;31437;31438;31439 47313;47314;47315;47316;47317;47318;47319;47320;47321;47322;47323;47324 47319 12 NEIDNYEEDYQK LTEAEKLLTQHENIKNEIDNYEEDYQKMRD NIKNEIDNYEEDYQKMRDMGEMVTQGQTDA K N E Q K M 0 0 2 2 0 1 3 0 0 1 0 1 0 0 0 0 0 0 2 0 0 0 12 0 1558.6423 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24 B2ZZ89 1109 1120 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 8.049E-32 206.49 4 0.82962 1.0512 4.8609 4 Median 0.82962 1.0512 4.8609 4 0 Median NaN NaN NaN 0 0 Median 38840000 21967000 16873000 38840000 21967000 16873000 0 0 0 8691 346 8927 31440;31441;31442;31443 47325;47326;47327;47328;47329;47330;47331;47332 47326 8 NEIIILANTTNTELK NNRQLNYVQLEIDIKNEIIILANTTNTELK NEIIILANTTNTELKDLPKRIPKDSARYHF K N E L K D 1 0 3 0 0 0 2 0 0 3 2 1 0 0 0 0 3 0 0 0 0 0 15 0 1685.92 F8VS81;Q12792 F8VS81 247 261 TWF1 Twinfilin-1 yes no 2 0.0013476 47.288 1 0.97 1.2225 NaN 1 Median 0.97 1.2225 NaN 1 0 Median NaN NaN NaN 0 0 Median 2403500 890050 1513500 2403500 890050 1513500 0 0 0 8692 1061 8928 31444 47333 47333 1 NEIPHSCGEVCRK YTCFCGKVKNPEWSRNEIPHSCGEVCRKKQ SRNEIPHSCGEVCRKKQPGQDCPHSCNLLC R N E R K K 0 1 1 0 2 0 2 1 1 1 0 1 0 0 1 1 0 0 0 1 0 0 13 1 1584.7137 Q12986;A0JLR2 Q12986 434 446 NFX1 Transcriptional repressor NF-X1 yes no 3 0.0037051 69.03 1 0.8995 1.1625 NaN 1 Median 0.8995 1.1625 NaN 1 0 Median NaN NaN NaN 0 0 Median 1449400 660720 788670 1449400 660720 788670 0 0 0 8693 1460 8929 31445 47334 47334 1 NELEIPGQYDGR ECSPWMSDFKVEFLRNELEIPGQYDGRGKP FLRNELEIPGQYDGRGKPLPEYHVRIAGFD R N E G R G 0 1 1 1 0 1 2 2 0 1 1 0 0 0 1 0 0 0 1 0 0 0 12 0 1389.6525 P78527 P78527 3697 3708 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 2.7123E-16 176.6 3 2 0.4768 0.63507 43.757 5 Median 0.4768 0.62125 1.3559 3 0 Plateau 0.90828 1.3874 5.6987 2 0 Median 104010000 64196000 39816000 66013000 44138000 21875000 37999000 20058000 17941000 8694 1427 8930 31446;31447;31448;31449;31450 47335;47336;47337;47338;47339;47340;47341 47336 7 NELESYAYSLK FAEEDKKLKERIDTRNELESYAYSLKNQIG IDTRNELESYAYSLKNQIGDKEKLGGKLSS R N E L K N 1 0 1 0 0 0 2 0 0 0 2 1 0 0 0 2 0 0 2 0 0 0 11 0 1315.6296 V9HWB4;P11021 V9HWB4 563 573 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 2 0.00082386 76.228 2 0.9715 1.3897 12.396 2 Median NaN NaN NaN 0 0 Median 0.9715 1.3897 12.396 2 0 Median 11703000 5870900 5832200 0 0 0 11703000 5870900 5832200 8695 1252 8931 31451;31452 47342;47343;47344;47345 47345 4 NELLTTTVPEIQR GPGQCFRLYTQSAYKNELLTTTVPEIQRTN YKNELLTTTVPEIQRTNLANVVLLLKSLGV K N E Q R T 0 1 1 0 0 1 2 0 0 1 2 0 0 0 1 0 3 0 0 1 0 0 13 0 1512.8148 B4DM30;B4DET0;A8K6G9;Q92620;B4DN69 B4DM30 549 561 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes no 2 0.01318 55.401 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6742400 6742400 0 6742400 6742400 0 0 0 0 8696 624 8932 31453;31454 47346;47347 47347 2 NELMYQLEQDHDLQAILQER PLAFATPEQISMDLKNELMYQLEQDHDLQA QLEQDHDLQAILQERELLPVKKFESEILEA K N E E R E 1 1 1 2 0 4 3 0 1 1 4 0 1 0 0 0 0 0 1 0 0 0 20 0 2485.1907 Q08211;Q58F26;Q6PJK6 Q08211 366 385 DHX9 ATP-dependent RNA helicase A yes no 3 1.0642E-32 176.68 9 2 0.64138 0.85655 13.14 10 Median 0.65018 0.8631 12.755 9 0 Median 0.46833 0.77309 NaN 1 0 Median 268370000 166140000 102220000 187670000 110820000 76850000 80695000 55321000 25374000 8697 1448 8933;8934 31455;31456;31457;31458;31459;31460;31461;31462;31463;31464;31465 47348;47349;47350;47351;47352;47353;47354;47355;47356;47357;47358;47359;47360;47361;47362 47357 655 15 NELQQTINK QKYSVADIERINHERNELQQTINKLTKDLE RINHERNELQQTINKLTKDLEAEQQKLWNE R N E N K L 0 0 2 0 0 2 1 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 9 0 1086.5669 A8K031;O14777;Q05DQ6 A8K031 374 382 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 0.031309 47.853 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1840500 0 1840500 0 0 0 1840500 0 1840500 8698 574 8935 31466 47363 47363 1 NENEEILERPAQLANAR EGFGHRPHKDLWASKNENEEILERPAQLAN NEEILERPAQLANARETPHSPGVEDAPIAK K N E A R E 3 2 3 0 0 1 4 0 0 1 2 0 0 0 1 0 0 0 0 0 0 0 17 1 1965.9868 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2 F8VQE1 308 324 LIMA1 LIM domain and actin-binding protein 1 yes no 2;3 6.7085E-50 164.13 7 2 0.65645 0.90749 36.4 9 Median 0.64459 0.88898 5.6078 7 0 Median 1.3493 2.0273 8.8723 2 0 Median 1193600000 719810000 473810000 1156300000 703960000 452320000 37338000 15854000 21483000 8699 834 8936 31467;31468;31469;31470;31471;31472;31473;31474;31475 47364;47365;47366;47367;47368;47369;47370;47371;47372;47373;47374;47375;47376;47377;47378;47379;47380;47381 47368 18 NENLAANFLLQQNFDED FPEGLVIQAYFACEKNENLAANFLLQQNFD NLAANFLLQQNFDED_______________ K N E E D - 2 0 4 2 0 2 2 0 0 0 3 0 0 2 0 0 0 0 0 0 0 0 17 0 1993.9017 P54727;Q53F10;B7Z4W4 P54727 393 409 RAD23B UV excision repair protein RAD23 homolog B yes no 2 0.0015258 102.97 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2945300 0 0 2945300 0 0 0 0 0 8700 1374 8937 31476 47382;47383 47382 2 NENTEGSPQEDGVELEGLK EMKAEAEKKNKKKIKNENTEGSPQEDGVEL EGSPQEDGVELEGLKQRLEKKQKREPGTKT K N E L K Q 0 0 2 1 0 1 5 3 0 0 2 1 0 0 1 1 1 0 0 1 0 0 19 0 2043.9233 P11388 P11388 1241 1259 TOP2A DNA topoisomerase 2-alpha yes yes 2 7.0437E-84 239.61 4 2 0.83685 1.1264 6.4787 6 Median 0.86292 1.0806 8.0866 4 0 Median 0.70906 1.1344 0.76175 2 0 Median 214130000 119400000 94735000 109480000 60630000 48846000 104660000 58767000 45889000 8701 1256 8938 31477;31478;31479;31480;31481;31482 47384;47385;47386;47387;47388;47389;47390;47391;47392;47393;47394;47395;47396;47397 47386 14 NEQAFEEVFQNANFR ILGQNAAYLGELKDKNEQAFEEVFQNANFR NEQAFEEVFQNANFRSFIFRVRVKVETYND K N E F R S 2 1 3 0 0 2 3 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 15 0 1841.8333 P27694;I3L4R8 P27694 554 568 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 2 0.020861 96.067 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 516600 516600 0 516600 516600 0 0 0 0 8702 1302 8939 31483 47398 47398 1 NERPDGVLLTFGGQTALNCGVELTK YFLPITPHYVTQVIRNERPDGVLLTFGGQT FGGQTALNCGVELTKAGVLARYGVRVLGTP R N E T K A 1 1 2 1 1 1 2 4 0 0 4 1 0 1 1 0 3 0 0 2 0 0 25 1 2688.3541 Q53SY7;F8VPD4;P27708 Q53SY7 392 416 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 3 3.2146E-07 83.216 1 0.26249 0.35253 NaN 1 Median 0.26249 0.35253 NaN 1 0 Median NaN NaN NaN 0 0 Median 4898900 3786600 1112300 4898900 3786600 1112300 0 0 0 8703 1060 8940 31484 47399;47400 47399 2 NESTPPSEELELDK QRYMSSKIPAVTYPKNESTPPSEELELDKW KNESTPPSEELELDKWKTTMKSSVQEECVS K N E D K W 0 0 1 1 0 0 4 0 0 0 2 1 0 0 2 2 1 0 0 0 0 0 14 0 1586.7312 Q7L0Y3;C9JVB6 Q7L0Y3 52 65 TRMT10C Mitochondrial ribonuclease P protein 1 yes no 2 1.9594E-09 142.89 3 0.41563 0.52005 12.924 2 Median 0.41563 0.52005 12.924 2 0 Median NaN NaN NaN 0 0 Median 14126000 9865400 4260300 14126000 9865400 4260300 0 0 0 8704 1610 8941 31485;31486;31487 47401;47402;47403;47404;47405 47404 5 NETGLLSSIK EVDDSLPSGGEKPSKNETGLLSSIKKFIKG EKPSKNETGLLSSIKKFIKGSTPKEERENP K N E I K K 0 0 1 0 0 0 1 1 0 1 2 1 0 0 0 2 1 0 0 0 0 0 10 0 1060.5764 A0A024R5Q8;Q05D32;H0YNU2;H0YNW9;H0YMH7 A0A024R5Q8 44 53 CTDSPL2 CTD small phosphatase-like protein 2 yes no 2 0.0052056 95.523 4 0.77384 0.98707 7.0464 4 Median 0.77384 0.98707 7.0464 4 0 Median NaN NaN NaN 0 0 Median 32362000 17700000 14662000 32362000 17700000 14662000 0 0 0 8705 149 8942 31488;31489;31490;31491 47406;47407;47408;47409 47407 4 NETLSISVQPGEGNK LSQRAYCGKMNFDHKNETLSISVQPGEGNK NETLSISVQPGEGNKAAFNDMRALSGGERS K N E N K A 0 0 2 0 0 1 2 2 0 1 1 1 0 0 1 2 1 0 0 1 0 0 15 0 1571.7791 Q96SB8 Q96SB8 964 978 SMC6 Structural maintenance of chromosomes protein 6 yes yes 2 0.010158 92.19 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 855790 855790 0 855790 855790 0 0 0 0 8706 1700 8943 31492;31493 47410;47411 47411 2 NEVSLVAEGFLPEDGSGR EHGLIEVDPVSREVKNEVSLVAEGFLPEDG SLVAEGFLPEDGSGRIVGVQDLLDQESVCV K N E G R I 1 1 1 1 0 0 3 3 0 0 2 0 0 1 1 2 0 0 0 2 0 0 18 0 1874.901 Q4LE38;O95163;Q8N516 Q4LE38 63 80 IKBKAP variant protein;IKBKAP Elongator complex protein 1 yes no 2 6.3604E-11 120.92 2 0.43803 0.59874 1.1989 2 Median 0.43803 0.59874 1.1989 2 0 Median NaN NaN NaN 0 0 Median 4135300 2923900 1211500 4135300 2923900 1211500 0 0 0 8707 1213 8944 31494;31495 47412;47413 47412 1 NEVTLEFHQNDDAEVSLMEVR FEIPLSNVSQCTTGKNEVTLEFHQNDDAEV FHQNDDAEVSLMEVRFYVPPTQEDGVDPVE K N E V R F 1 1 2 2 0 1 4 0 1 0 2 0 1 1 0 1 1 0 0 3 0 0 21 0 2474.1384 A0A024R4Z6;Q08945;E9PMD4;Q59GH7;E9PPZ7 A0A024R4Z6 144 164 SSRP1 FACT complex subunit SSRP1 yes no 3 0.00073445 31.775 1 0.76315 1.036 NaN 1 Median 0.76315 1.036 NaN 1 0 Median NaN NaN NaN 0 0 Median 6596900 3973000 2623900 6596900 3973000 2623900 0 0 0 8708 132 8945 31496 47414 47414 1 NEVTPSSTTASVAR LPIIDPILSKSKSYKNEVTPSSTTASVARK KNEVTPSSTTASVARKRKSDGSMEDANVRV K N E A R K 2 1 1 0 0 0 1 0 0 0 0 0 0 0 1 3 3 0 0 2 0 0 14 0 1418.7001 Q8IZT6;B3KWI2 Q8IZT6 560 573 ASPM Abnormal spindle-like microcephaly-associated protein yes no 2 0.00082429 55.452 1 2 1.2515 1.6208 10.54 2 Median NaN NaN NaN 0 0 Median 1.2515 1.6208 10.54 2 0 Median 11191000 6606300 4585100 2791600 2791600 0 8399800 3814700 4585100 8709 1631 8946 31497;31498;31499 47415;47416;47417 47416 3 NEYSLTGLCNR FCSFKIRTKTQSFCRNEYSLTGLCNRSSCP SFCRNEYSLTGLCNRSSCPLANSQYATIKE R N E N R S 0 1 2 0 1 0 1 1 0 0 2 0 0 0 0 1 1 0 1 0 0 0 11 0 1325.6034 Q9BXY0;H0YBV6;A0PJ56 Q9BXY0 31 41 MAK16 Protein MAK16 homolog yes no 2 9.6443E-26 213.53 4 1 0.79138 1.0599 3.438 4 Median 0.79138 1.0599 3.438 4 0 Median NaN NaN NaN 0 0 Median 60389000 32145000 28244000 58461000 32145000 26316000 1928400 0 1928400 8710 1724 8947 31500;31501;31502;31503;31504 47418;47419;47420;47421;47422;47423;47424;47425;47426;47427 47418 10 NFAADHFNQEILPVFLNANR EGAKYLKRKDIESIRNFAADHFNQEILPVF HFNQEILPVFLNANRNWNSPVANFIMESQR R N F N R N 3 1 4 1 0 1 1 0 1 1 2 0 0 3 1 0 0 0 0 1 0 0 20 0 2329.1604 A8K4A8;A0A024R8Z9;Q6PI48;Q9NVT8;Q9H9J7 A8K4A8 389 408 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 3 7.9524E-06 95.666 3 0.57965 0.80258 5.1033 2 Median 0.57965 0.80258 5.1033 2 0 Median NaN NaN NaN 0 0 Median 10937000 6077700 4859400 10937000 6077700 4859400 0 0 0 8711 209 8948 31505;31506;31507 47428;47429;47430;47431 47429 4 NFAFLEFR APGNPVLAVQINQDKNFAFLEFRSVDETTQ VQINQDKNFAFLEFRSVDETTQAMAFDGII K N F F R S 1 1 1 0 0 0 1 0 0 0 1 0 0 3 0 0 0 0 0 0 0 0 8 0 1042.5236 K7ENG2;B5BU25;P26368 K7ENG2 32 39 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 2 0.0078449 96.253 3 0.44149 0.61176 21.734 2 Median 0.44149 0.61176 21.734 2 0 Median NaN NaN NaN 0 0 Median 7174400 5651400 1523000 7174400 5651400 1523000 0 0 0 8712 893 8949 31508;31509;31510 47432;47433;47434;47435 47435 4 NFCGPSVTVDASAATK EFILPLPVDTIPETKNFCGPSVTVDASAAT FCGPSVTVDASAATKSMNCLARKHSEREQP K N F T K S 3 0 1 1 1 0 0 1 0 0 0 1 0 1 1 2 2 0 0 2 0 0 16 0 1623.7563 Q96QE3 Q96QE3 1527 1542 ATAD5 ATPase family AAA domain-containing protein 5 yes yes 2 0.0042284 75.483 4 1.5404 1.9917 NaN 1 Median 1.5404 1.9917 NaN 1 0 Median NaN NaN NaN 0 0 Median 4394800 2229800 2165000 4394800 2229800 2165000 0 0 0 8713 1698 8950 31511;31512;31513;31514 47436;47437;47438;47439 47436 4 NFDEALVDYFCDEFK LKVLATTFDPYLGGRNFDEALVDYFCDEFK NFDEALVDYFCDEFKTKYKINVKENSRALL R N F F K T 1 0 1 3 1 0 2 0 0 0 1 1 0 3 0 0 0 0 1 1 0 0 15 0 1910.8033 D6RJ96;B3KNM0;E9PDE8;B4DXT2;Q53ZP9;A0A140VKE7;O95757;B4DZR0 D6RJ96 194 208 HSPA4L Heat shock 70 kDa protein 4L yes no 2 0.0038561 82.069 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1185900 1185900 0 1185900 1185900 0 0 0 0 8714 513 8951 31515;31516 47440;47441 47441 2 NFDLRPGVIVR TSQKSERELLEIVKKNFDLRPGVIVR____ IVKKNFDLRPGVIVR_______________ K N F V R - 0 2 1 1 0 0 0 1 0 1 1 0 0 1 1 0 0 0 0 2 0 0 11 1 1284.7303 B4DEX8;A0A140VJP5;P31153;B4DFQ8;B4E1K2;B4DN74;A8K455;Q00266 B4DEX8 352 362 MAT2A;MAT1A S-adenosylmethionine synthase;S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase isoform type-1 yes no 3 2.8211E-05 84.17 2 1 0.33882 0.45591 90.932 3 Median 0.31553 0.42237 10.807 2 0 Median 1.4597 2.029 NaN 1 0 Median 46715000 32802000 13914000 38703000 29546000 9157300 8012400 3256000 4756400 8715 501 8952 31517;31518;31519 47442;47443;47444;47445;47446 47444 5 NFEALNAR LSPMQKKYYKYILTRNFEALNARGGGNQVS YKYILTRNFEALNARGGGNQVSLLNVVMDL R N F A R G 2 1 2 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 8 0 933.46683 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 967 974 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.005579 89.142 3 2 0.74387 1.0123 36.494 5 Median 0.68828 0.93347 10.139 3 0 Plateau 1.0738 1.7316 1.9664 2 0 Median 202320000 107710000 94604000 98951000 57929000 41022000 103370000 49784000 53583000 8716 428 8953 31520;31521;31522;31523;31524 47447;47448;47449;47450;47451;47452;47453 47450 7 NFEHLIPDAPELIHDFLVNEK YVRRNAVLAIYTIYRNFEHLIPDAPELIHD PDAPELIHDFLVNEKDASCKRNAFMMLIHA R N F E K D 1 0 2 2 0 0 3 0 2 2 3 1 0 2 2 0 0 0 0 1 0 0 21 0 2489.2591 P53618;E9PP73 P53618 165 185 COPB1 Coatomer subunit beta yes no 3 0.0084203 73.688 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1554300 1554300 0 1554300 1554300 0 0 0 0 8717 1370 8954 31525;31526 47454;47455 47455 2 NFFNELSHK VLLIDPEPQIAALAKNFFNELSHKGNAIYN IAALAKNFFNELSHKGNAIYNLLPDIISRL K N F H K G 0 0 2 0 0 0 1 0 1 0 1 1 0 2 0 1 0 0 0 0 0 0 9 0 1134.5458 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1151 1159 NCAPD2 Condensin complex subunit 1 yes no 2;3 0.0012577 101.64 2 2 0.46553 0.73154 12.642 3 Median 0.73386 0.90982 NaN 1 0 Median 0.45957 0.73091 0.12319 2 0 Median 98887000 68021000 30865000 23342000 15629000 7712300 75545000 52392000 23153000 8718 757 8955 31527;31528;31529;31530 47456;47457;47458;47459;47460;47461;47462;47463 47461 8 NFFVNYR AISDVIGNKSVVQVKNFFVNYRRRFNIDEV NKSVVQVKNFFVNYRRRFNIDEVLQEWEAE K N F Y R R 0 1 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 7 0 958.4661 Q9UKL0 Q9UKL0 422 428 RCOR1 REST corepressor 1 no no 2 0.04865 79.939 1 0.56616 0.79398 NaN 1 Median 0.56616 0.79398 NaN 1 0 Median NaN NaN NaN 0 0 Median 2007400 1160000 847390 2007400 1160000 847390 0 0 0 8719 1788 8956 31531 47464 47464 1 NFGAENPDPFVPVLSTAVK INRQTALYTLKLLCKNFGAENPDPFVPVLS ENPDPFVPVLSTAVKLIAPERKEEKNVLGS K N F V K L 2 0 2 1 0 0 1 1 0 0 1 1 0 2 3 1 1 0 0 3 0 0 19 0 2001.0207 B2RWN5;B4E263;Q8N7L7 B2RWN5 1680 1698 HEATR1 yes no 2 7.2807E-62 209.53 3 2 0.78393 1.0398 10.071 5 Median 0.90359 1.1299 8.5257 3 0 Median 0.61137 0.97859 8.5774 2 0 Median 248310000 142050000 106260000 139890000 74805000 65086000 108410000 67243000 41172000 8720 748 8957 31532;31533;31534;31535;31536 47465;47466;47467;47468;47469;47470;47471;47472;47473;47474 47465 10 NFGASLLLPGLK ______________________________ EERNFGASLLLPGLKQKNSVGFSSQLYGYA R N F L K Q 1 0 1 0 0 0 0 2 0 0 4 1 0 1 1 1 0 0 0 0 0 0 12 0 1228.718 Q6PKB3;G5EA06;B4DT94;A0A024RAJ1;Q92552;D6RH20;D6RJC7 Q6PKB3 11 22 MRPS27 28S ribosomal protein S27, mitochondrial yes no 2 0.0072511 57.598 1 0.60911 0.77166 NaN 1 Median 0.60911 0.77166 NaN 1 0 Median NaN NaN NaN 0 0 Median 2723800 1759400 964410 2723800 1759400 964410 0 0 0 8721 244 8958 31537 47475 47475 1 NFGEEVDDESLK ELGAKAKEFTNVYIKNFGEEVDDESLKELF YIKNFGEEVDDESLKELFSQFGKTLSVKVM K N F L K E 0 0 1 2 0 0 3 1 0 0 1 1 0 1 0 1 0 0 0 1 0 0 12 0 1380.6045 B1ANR0;Q6IQ30;Q13310;H0Y5F5;Q15164;H0YCC8 B1ANR0 197 208 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 yes no 2 1.4071E-07 147.74 2 2 0.80559 1.0975 162.37 4 Median 0.21266 0.26887 8.8198 2 0 Median 2.9899 4.4647 8.3491 2 0 Median 45844000 25482000 20361000 28433000 20825000 7607600 17411000 4657200 12754000 8722 676 8959 31538;31539;31540;31541 47476;47477;47478;47479;47480 47476 5 NFGGTVSIIPVGEAK QLSGVLIADDHCTIKNFGGTVSIIPVGEAK NFGGTVSIIPVGEAKTYVNGKHILEITVLR K N F A K T 1 0 1 0 0 0 1 3 0 2 0 1 0 1 1 1 1 0 0 2 0 0 15 0 1487.7984 Q15058 Q15058 854 868 KIF14 Kinesin-like protein KIF14 yes yes 2 2.5528E-07 131.69 2 0.80899 1.0128 9.4743 2 Median 0.80899 1.0128 9.4743 2 0 Median NaN NaN NaN 0 0 Median 11615000 5900900 5714100 11615000 5900900 5714100 0 0 0 8723 1504 8960 31542;31543 47481;47482 47481 2 NFGIGQDIQPK EAKKVVNPLFEKRPKNFGIGQDIQPKRDLT KRPKNFGIGQDIQPKRDLTRFVKWPRYIRL K N F P K R 0 0 1 1 0 2 0 2 0 2 0 1 0 1 1 0 0 0 0 0 0 0 11 0 1215.6248 P62424;Q5T8U3 P62424 38 48 RPL7A 60S ribosomal protein L7a yes no 2 5.7983E-06 122.96 4 2 0.83864 1.1754 11.44 6 Linear 0.77419 1.0119 5.3087 4 0 Median 0.53334 0.84064 2.2726 2 0 Median 2984700000 1681500000 1303200000 2396300000 1303200000 1093100000 588420000 378300000 210120000 8724 1411 8961 31544;31545;31546;31547;31548;31549 47483;47484;47485;47486;47487;47488;47489;47490;47491;47492;47493;47494;47495;47496;47497;47498;47499 47495 17 NFGIWLR VYCGQVFEKSPLRVKNFGIWLRYDSRSGTH EKSPLRVKNFGIWLRYDSRSGTHNMYREYR K N F L R Y 0 1 1 0 0 0 0 1 0 1 1 0 0 1 0 0 0 1 0 0 0 0 7 0 904.49192 Q02543;M0R3D6;M0R1A7;B2R4C0;M0R0P7;B4DM94;M0R117;B4DM74;B4DUV3;Q53HD3;Q32XH3 Q02543 77 83 RPL18A 60S ribosomal protein L18a yes no 2 0.026103 62.714 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5449400 0 5449400 5449400 0 5449400 0 0 0 8725 1436 8962 31550 47500 47500 1 NFGSYVTHETK FDKKYNPTWHCIVGRNFGSYVTHETKHFIY IVGRNFGSYVTHETKHFIYFYLGQVAILLF R N F T K H 0 0 1 0 0 0 1 1 1 0 0 1 0 1 0 1 2 0 1 1 0 0 11 0 1281.599 Q6FGH9;P63167;Q96FJ2 Q6FGH9 61 71 DNCL1;DYNLL1;DYNLL2 Dynein light chain 1, cytoplasmic;Dynein light chain 2, cytoplasmic yes no 2;3 2.5777E-09 161.51 5 2 0.66632 0.84124 39.186 7 Median 0.6512 0.84123 2.6973 5 0 Median 1.1517 1.8417 0.19451 2 0 Median 430310000 250330000 179970000 330040000 203550000 126490000 100270000 46781000 53485000 8726 1418 8963 31551;31552;31553;31554;31555;31556;31557 47501;47502;47503;47504;47505;47506;47507;47508;47509;47510;47511;47512;47513 47501 13 NFHIFYQLLEGGEEETLRR LLEKSRVVHQNHGERNFHIFYQLLEGGEEE FYQLLEGGEEETLRRLGLERNPQSYLYLVK R N F R R L 0 2 1 0 0 1 4 2 1 1 3 0 0 2 0 0 1 0 1 0 0 0 19 1 2350.1706 F5H6E2;B7Z3E5;O00159;D3DTH7;B7Z9C0;I3L204 F5H6E2 212 230 MYO1C Unconventional myosin-Ic yes no 3 0.025272 29.274 1 0.93599 1.1757 NaN 1 Median 0.93599 1.1757 NaN 1 0 Median NaN NaN NaN 0 0 Median 4842700 2315100 2527600 4842700 2315100 2527600 0 0 0 8727 905 8964 31558 47514 47514 0 NFHVFYQLLSGASEELLNK LLEKSRVVKQPRGERNFHVFYQLLSGASEE FYQLLSGASEELLNKLKLERDFSRYNYLSL R N F N K L 1 0 2 0 0 1 2 1 1 0 4 1 0 2 0 2 0 0 1 1 0 0 19 0 2208.1215 E9PDF6;B0I1S9;O43795;E7EQD9;Q05CR5 E9PDF6 204 222 MYO1B Unconventional myosin-Ib yes no 3 1.8537E-05 95.554 1 1.2124 1.5641 NaN 1 Median 1.2124 1.5641 NaN 1 0 Median NaN NaN NaN 0 0 Median 6994600 3103300 3891200 6994600 3103300 3891200 0 0 0 8728 665 8965 31559 47515;47516 47515 2 NFILDQTNVSAAAQR QCLGKFIEIAARKKRNFILDQTNVSAAAQR NFILDQTNVSAAAQRRKMCLFAGFQRKAVV R N F Q R R 3 1 2 1 0 2 0 0 0 1 1 0 0 1 0 1 1 0 0 1 0 0 15 0 1646.8376 Q96BA7;B3KX72;B4DLR3;Q00839;Q7Z4Q5 Q96BA7 473 487 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 2 6.0615E-37 172.92 5 2 0.40208 0.55569 95.833 6 Median 0.39472 0.54132 2.7978 4 0 Median 2.1383 3.4712 0.41617 2 0 Median 445090000 270720000 174360000 315780000 229120000 86660000 129310000 41607000 87705000 8729 788 8966 31560;31561;31562;31563;31564;31565;31566 47517;47518;47519;47520;47521;47522;47523;47524;47525;47526;47527;47528;47529;47530;47531;47532 47527 16 NFINNPLAQADWAAK ______________________________ NFINNPLAQADWAAKKLVWVPSDKSGFEPA K N F A K K 4 0 3 1 0 1 0 0 0 1 1 1 0 1 1 0 0 1 0 0 0 0 15 0 1671.8369 A0A024R1N1;P35579;Q86XU5;B4E3S1;Q5BKV1;B1AH99;A0A0U4BW16 A0A024R1N1 15 29 MYH9 Myosin-9 no no 2 0.0098131 45.28 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8008900 0 8008900 0 0 0 8008900 0 8008900 8730 61;490 8967 31567 47533 47533 1 NFITAEELRR ADQVIASFKVLAGDKNFITAEELRRELPPD LAGDKNFITAEELRRELPPDQAEYCIARMA K N F R R E 1 2 1 0 0 0 2 0 0 1 1 0 0 1 0 0 1 0 0 0 0 0 10 1 1247.6622 A0A0S2Z3G9;O43707;Q96BG6;F5GXS2;H7C144;A0A0S2Z3X3;A0A0S2Z3C0 A0A0S2Z3G9 860 869 ACTN4 Alpha-actinin-4 yes no 2 0.040375 41.029 1 0.9252 1.1674 NaN 1 Median 0.9252 1.1674 NaN 1 0 Median NaN NaN NaN 0 0 Median 5099300 2744300 2355000 5099300 2744300 2355000 0 0 0 8731 451 8968 31568 47534 47534 1 NFLTSLVAGLSTER KLPQSITNPKLDFFKNFLTSLVAGLSTERT KNFLTSLVAGLSTERTKTSSLESSAVISAF K N F E R T 1 1 1 0 0 0 1 1 0 0 3 0 0 1 0 2 2 0 0 1 0 0 14 0 1506.8042 S4R3T2;H7BYG8;O94822 S4R3T2 313 326 LTN1 E3 ubiquitin-protein ligase listerin yes no 2 0.00015455 79.693 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 178480 178480 0 178480 178480 0 0 0 0 8732 1115 8969 31569 47535 47535 1 NFLYDIAGCSGTFTVQNR HPEVGLTENGKVILKNFLYDIAGCSGTFTV YDIAGCSGTFTVQNRELECIREIKERVGTS K N F N R E 1 1 2 1 1 1 0 2 0 1 1 0 0 2 0 1 2 0 1 1 0 0 18 0 2061.9578 B4DUT7;A0A140VJK6;P49915;Q53F90 B4DUT7 154 171 GMPS GMP synthase [glutamine-hydrolyzing] yes no 2 0.00052268 65.956 2 0.56033 0.7799 18.73 2 Median 0.56033 0.7799 18.73 2 0 Median NaN NaN NaN 0 0 Median 4311700 2382000 1929700 4311700 2382000 1929700 0 0 0 8733 498 8970 31570;31571 47536;47537 47537 1 NFMIDTYR GKNKSKTPEIYLAYRNFMIDTYRLNPQEYL EIYLAYRNFMIDTYRLNPQEYLTSTACRRN R N F Y R L 0 1 1 1 0 0 0 0 0 1 0 0 1 1 0 0 1 0 1 0 0 0 8 0 1058.4855 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q05BW5;Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;B4DF22 Q58EY4 492 499 SMARCC1;SMARCC2 SWI/SNF complex subunit SMARCC1;SWI/SNF complex subunit SMARCC2 no no 2 0.017505 50.607 1 0.95088 1.3349 NaN 1 Median NaN NaN NaN 0 0 Median 0.95088 1.3349 NaN 1 0 Median 8228400 3927700 4300700 0 0 0 8228400 3927700 4300700 8734 1549;257 8971 31572 47538 47538 106 1 NFNAFQK GKEKKIKKFKREKRRNFNAFQKLQTRRNFW KFKREKRRNFNAFQKLQTRRNFWSVTHPAK R N F Q K L 1 0 2 0 0 1 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 7 0 867.4239 A0A024R8V6;Q9P275;B3KMW2;K7EIH0;K7EKN3;K7EKL7 A0A024R8V6 1094 1100 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 2 0.015583 110.54 2 1.096 1.3862 18.159 2 Median 1.096 1.3862 18.159 2 0 Median NaN NaN NaN 0 0 Median 10100000 4721800 5377900 10100000 4721800 5377900 0 0 0 8735 205 8972 31573;31574 47539;47540 47540 2 NFPHICVECGK EQGLLNRHLLAVHSKNFPHICVECGKGFRH VHSKNFPHICVECGKGFRHPSELKKHMRIH K N F G K G 0 0 1 0 2 0 1 1 1 1 0 1 0 1 1 0 0 0 0 1 0 0 11 0 1359.6064 A0A024RC04;B7ZKJ5;P17010;Q8WWU0;Q8WXB7;E9PEP7;P08048 A0A024RC04 545 555 ZFX;ZFY Zinc finger X-chromosomal protein;Zinc finger Y-chromosomal protein yes no 2 0.024371 46.891 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2036300 2036300 0 2036300 2036300 0 0 0 0 8736 286 8973 31575 47541 47541 1 NFQIIEEDAALVEIGPR HVFTFTILDNRIWFRNFQIIEEDAALVEIG QIIEEDAALVEIGPRFVLNLIKIFQGSFGG R N F P R F 2 1 1 1 0 1 3 1 0 3 1 0 0 1 1 0 0 0 0 1 0 0 17 0 1912.9894 Q8TDN6;A0JLQ5 Q8TDN6 219 235 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 2 2.1144E-194 297.5 4 2 0.98672 1.3516 9.7985 6 Median 0.98776 1.3578 0.86286 4 0 Median 0.76235 1.1826 14.676 2 0 Median 392110000 202450000 189660000 337740000 172950000 164790000 54377000 29502000 24875000 8737 1659 8974 31576;31577;31578;31579;31580;31581 47542;47543;47544;47545;47546;47547;47548;47549;47550;47551;47552;47553;47554 47550 13 NFQNIFPPSATLHLSNIPPSVSEEDLK YGNSPLHRFKKPGSKNFQNIFPPSATLHLS HLSNIPPSVSEEDLKVLFSSNGGVVKGFKF K N F L K V 1 0 3 1 0 1 2 0 1 2 3 1 0 2 4 4 1 0 0 1 0 0 27 0 2993.5135 A6NLN1;A0A0U1RRM4;P26599;A0A0D9SF20 A6NLN1 441 467 PTBP1 Polypyrimidine tract-binding protein 1 yes no 3 0.00012585 44.711 3 0.4371 0.5549 7.8995 3 Median 0.4371 0.5549 7.8995 3 0 Median NaN NaN NaN 0 0 Median 16904000 10202000 6701600 16904000 10202000 6701600 0 0 0 8738 489 8975 31582;31583;31584 47555;47556;47557;47558;47559 47559 5 NFQNIFPPSATLHLSNIPPSVTVDDLK FSNSPLHRFKKPGSKNFQNIFPPSATLHLS HLSNIPPSVTVDDLKNLFIEAGCSVKAFKF K N F L K N 1 0 3 2 0 1 0 0 1 2 3 1 0 2 4 3 2 0 0 2 0 0 27 0 2963.5393 A0A024R163;O95758 A0A024R163 466 492 ROD1;PTBP3 Polypyrimidine tract-binding protein 3 yes no 3 0.00020252 45.972 2 0.29497 0.38679 NaN 1 Median 0.29497 0.38679 NaN 1 0 Median NaN NaN NaN 0 0 Median 6610200 5267000 1343200 6610200 5267000 1343200 0 0 0 8739 52 8976 31585;31586 47560;47561 47561 2 NFQPVIIFSFSK GPSNVFKIVKMIMERNFQPVIIFSFSKKDC MERNFQPVIIFSFSKKDCEAYALQMTKLDF R N F S K K 0 0 1 0 0 1 0 0 0 2 0 1 0 3 1 2 0 0 0 1 0 0 12 0 1425.7656 P42285;A8K6I4;B4E3M6 P42285 385 396 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 2.6268E-07 117.52 4 0.70802 0.89674 12.15 4 Median 0.70802 0.89674 12.15 4 0 Median NaN NaN NaN 0 0 Median 41420000 23141000 18279000 41420000 23141000 18279000 0 0 0 8740 1336 8977 31587;31588;31589;31590 47562;47563;47564;47565;47566;47567;47568 47566 7 NFSVNLYK YGLSFFKPRPGNFERNFSVNLYKVTGQFPW RPGNFERNFSVNLYKVTGQFPWSSLRETDR R N F Y K V 0 0 2 0 0 0 0 0 0 0 1 1 0 1 0 1 0 0 1 1 0 0 8 0 983.50763 Q9Y512 Q9Y512 187 194 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 2 0.017668 94.006 1 0.48025 0.59983 NaN 1 Median 0.48025 0.59983 NaN 1 0 Median NaN NaN NaN 0 0 Median 14351000 9348200 5002500 14351000 9348200 5002500 0 0 0 8741 1827 8978 31591 47569 47569 1 NFTMDTESSVYNFEGEDYREK EMNEKLSKMGESSLRNFTMDTESSVYNFEG ESSVYNFEGEDYREKQKIAFTEWIEPPKRE R N F E K Q 0 1 2 2 0 0 4 1 0 0 0 1 1 2 0 2 2 0 2 1 0 0 21 1 2560.07 O60264;B7ZAX9;B4DZC0 O60264 702 722 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 3 1.9221E-05 86.213 2 2.1691 2.9291 NaN 1 Median 2.1691 2.9291 NaN 1 0 Median NaN NaN NaN 0 0 Median 5651800 874010 4777800 5651800 874010 4777800 0 0 0 8742 1189 8979 31592;31593 47570;47571 47570 434 2 NFVNTFIQFK DDRKRESTKMAEAIRNFVNTFIQFKKPIIV AEAIRNFVNTFIQFKKPIIVAVNGPAIGLG R N F F K K 0 0 2 0 0 1 0 0 0 1 0 1 0 3 0 0 1 0 0 1 0 0 10 0 1256.6554 Q9Y232;C9JQG7;A8K8L0;A1L473;A8K8F3;C9JMH9;Q9Y6F8;Q9Y6F7 Q9Y232 429 438 CDYL;CDY2B;CDY2A;CDY1 Chromodomain Y-like protein;Testis-specific chromodomain protein Y 1;Testis-specific chromodomain protein Y 2 yes no 2 1.9376E-08 154.49 5 2 0.85452 1.077 28.279 7 Median 0.83739 1.0351 18.877 5 0 Median 1.04 1.5822 3.507 2 0 Median 153400000 76950000 76446000 108850000 57000000 51846000 44549000 19950000 24600000 8743 1802 8980 31594;31595;31596;31597;31598;31599;31600 47572;47573;47574;47575;47576;47577;47578;47579;47580;47581;47582;47583;47584;47585 47573 14 NFVVVMVTKPK LNDDTALKEYKIDEKNFVVVMVTKPKAVST IDEKNFVVVMVTKPKAVSTPAPATTQQSAP K N F P K A 0 0 1 0 0 0 0 0 0 0 0 2 1 1 1 0 1 0 0 4 0 0 11 1 1260.7264 P54727;Q53F10;B7Z4W4;B4DEA3;B7ZA74;Q5W0S5;Q5W0S4 P54727 68 78 RAD23B UV excision repair protein RAD23 homolog B yes no 2 0.039457 42.338 1 0.41188 0.64114 NaN 1 Median NaN NaN NaN 0 0 Median 0.41188 0.64114 NaN 1 0 Median 7007000 4799900 2207100 0 0 0 7007000 4799900 2207100 8744 1374 8981 31601 47586 47586 0 NFYELSPHIFALSDEAYR LPIYSPEKVEEYRNRNFYELSPHIFALSDE ELSPHIFALSDEAYRSLRDQDKDQCILITG R N F Y R S 2 1 1 1 0 0 2 0 1 1 2 0 0 2 1 2 0 0 2 0 0 0 18 0 2171.0324 E9PDF6;B0I1S9;O43795;E7EQD9;Q05CR5;C9JYW1;C9JUP5 E9PDF6 76 93 MYO1B Unconventional myosin-Ib yes no 3 2.2368E-06 81.854 4 1.1745 1.5889 8.8822 4 Median 1.1745 1.5889 8.8822 4 0 Median NaN NaN NaN 0 0 Median 31305000 16971000 14334000 31305000 16971000 14334000 0 0 0 8745 665 8982 31602;31603;31604;31605 47587;47588;47589;47590 47589 4 NFYLEEEDK ALFVIDTTPGMSADKNFYLEEEDKASEVAI GMSADKNFYLEEEDKASEVAIEEEKEEEED K N F D K A 0 0 1 1 0 0 3 0 0 0 1 1 0 1 0 0 0 0 1 0 0 0 9 0 1185.519 Q5QJE6;J3KP30;B7Z854 Q5QJE6 502 510 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2 0.0019745 108.98 4 1 0.89175 1.1372 3.6003 5 Median 0.9761 1.1622 2.743 4 0 Linear 0.7246 1.0945 NaN 1 0 Median 71593000 39634000 31959000 54664000 28762000 25902000 16929000 10872000 6056800 8746 1561 8983 31606;31607;31608;31609;31610 47591;47592;47593;47594;47595;47596;47597;47598;47599 47596 9 NFYQEHPDLAR GKKFGNPGEELVKKKNFYQEHPDLARRTAQ VKKKNFYQEHPDLARRTAQEVETYRRSKEI K N F A R R 1 1 1 1 0 1 1 0 1 0 1 0 0 1 1 0 0 0 1 0 0 0 11 0 1388.6473 B4DN41;J3KTA4;B5BUE6;P17844;B4DNG2;Q7Z2V5;Q59E92;J3QRQ7;J3QR02;J3KRX8;C1IK54;X6RLV5 B4DN41 46 56 DDX5;DKFZp686J01190;DDX5-ETV4 fusion Probable ATP-dependent RNA helicase DDX5 yes no 2;3 8.6091E-05 122.96 6 4 1.476 2.0382 78.428 7 Median 0.39758 0.52961 7.5671 3 0 Median 1.6227 2.2563 14.041 4 0 Median 108000000 55512000 52492000 76327000 43792000 32535000 31677000 11719000 19957000 8747 833 8984 31611;31612;31613;31614;31615;31616;31617;31618;31619;31620 47600;47601;47602;47603;47604;47605;47606;47607;47608;47609;47610;47611;47612;47613;47614 47607 15 NFYVEHPEVAR RKKKWDLSELPKFEKNFYVEHPEVARLTPY KFEKNFYVEHPEVARLTPYEVDELRRKKEI K N F A R L 1 1 1 0 0 0 2 0 1 0 0 0 0 1 1 0 0 0 1 2 0 0 11 0 1359.6571 Q59F66;Q92841;B4DZQ7 Q59F66 135 145 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2;3 0.00017469 105.17 5 1 0.59327 0.79952 28.49 4 Median 0.59327 0.79952 28.49 4 0 Median NaN NaN NaN 0 0 Median 51528000 24899000 26629000 46900000 24899000 22001000 4627100 0 4627100 8748 1554 8985 31621;31622;31623;31624;31625;31626 47615;47616;47617;47618;47619;47620;47621;47622;47623 47621 9 NFYVEVPELAK EPVDHGKIEYEPFRKNFYVEVPELAKMSQE PFRKNFYVEVPELAKMSQEEVNVFRLEMEG K N F A K M 1 0 1 0 0 0 2 0 0 0 1 1 0 1 1 0 0 0 1 2 0 0 11 0 1307.6762 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6;D6RJA6 A8K6X3 334 344 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.0018309 87.298 3 0.57338 0.7308 7.6935 3 Plateau 0.57338 0.7308 7.6935 3 0 Plateau NaN NaN NaN 0 0 Median 18762000 12262000 6500600 18762000 12262000 6500600 0 0 0 8749 424 8986 31627;31628;31629 47624;47625;47626;47627;47628 47627 5 NGECHSAVIQAVEDLDLSK QIFLDLLFEPVRHFKNGECHSAVIQAVEDL HSAVIQAVEDLDLSKVLPLGRQHGILNSLE K N G S K V 2 0 1 2 1 1 2 1 1 1 2 1 0 0 0 2 0 0 0 2 0 0 19 0 2083.9844 O75691 O75691 1069 1087 UTP20 Small subunit processome component 20 homolog yes yes 3 0.0026293 56.708 1 1.41 1.8416 NaN 1 Median 1.41 1.8416 NaN 1 0 Median NaN NaN NaN 0 0 Median 2351800 1010400 1341400 2351800 1010400 1341400 0 0 0 8750 1207 8987 31630 47629 47629 1 NGFEQFCINFVNEK NIGVLDIYGFEIFQKNGFEQFCINFVNEKL KNGFEQFCINFVNEKLQQIFIELTLKAEQE K N G E K L 0 0 3 0 1 1 2 1 0 1 0 1 0 3 0 0 0 0 0 1 0 0 14 0 1744.7879 Q4KMR3;Q12965;H0YLE5;Q6ZNI9;O00160;B0I1T1;Q4LE34 Q4KMR3 398 411 MYO1E;FLJ00395;MYO1F;MYO1F variant protein Unconventional myosin-Ie;Unconventional myosin-If yes no 2 1.7332E-06 117.27 4 0.5158 0.65525 NaN 1 Median 0.5158 0.65525 NaN 1 0 Median NaN NaN NaN 0 0 Median 16139000 13230000 2909500 16139000 13230000 2909500 0 0 0 8751 1459 8988 31631;31632;31633;31634 47630;47631;47632;47633;47634;47635 47634 6 NGGHFVISIK DQTRIVALNAHTFLRNGGHFVISIKANCID HTFLRNGGHFVISIKANCIDSTASAEAVFA R N G I K A 0 0 1 0 0 0 0 2 1 2 0 1 0 1 0 1 0 0 0 1 0 0 10 0 1070.5873 Q96BS4;P22087;M0R299;M0QXL5;M0R2Q4;B4DLD4;M0R0P1 Q96BS4 195 204 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2 2.0018E-16 151.22 3 2 0.60896 0.77818 19.942 5 Median 0.66974 0.85357 7.6171 3 0 Median 0.38994 0.59523 3.3793 2 0 Median 178290000 110980000 67309000 133250000 78934000 54311000 45047000 32049000 12998000 8752 1288 8989 31635;31636;31637;31638;31639 47636;47637;47638;47639;47640;47641;47642;47643;47644 47640 9 NGIDILVGTPGR FYGGTPYGGQFERMRNGIDILVGTPGRIKD RMRNGIDILVGTPGRIKDHIQNGKLDLTKL R N G G R I 0 1 1 1 0 0 0 3 0 2 1 0 0 0 1 0 1 0 0 1 0 0 12 0 1210.667 Q9NR30;Q9BQ39;B4DED6;B4DW97;A0A087WVC1;K0J110;Q53FI9 Q9NR30 307 318 DDX21;DDX50;mcdrh Nucleolar RNA helicase 2;ATP-dependent RNA helicase DDX50 no no 2 7.2989E-08 105.52 1 2 0.50296 0.82348 19.647 3 Plateau 0.44589 0.58591 NaN 1 0 Median 0.50296 0.80113 10.932 2 0 Median 86151000 57024000 29126000 8341000 6118400 2222700 77810000 50906000 26904000 8753 1756;1707 8990 31640;31641;31642 47645;47646;47647;47648;47649 47649 5 NGIGIHEHASIDLPGIK TCSGAFKEGSLRIIRNGIGIHEHASIDLPG IGIHEHASIDLPGIKGLWPLRSDPNRETDD R N G I K G 1 0 1 1 0 0 1 3 2 4 1 1 0 0 1 1 0 0 0 0 0 0 17 0 1769.9424 Q16531;B4DSA8;F5GY55;B7Z2A1;B7Z859 Q16531 392 408 DDB1 DNA damage-binding protein 1 yes no 3 0.022455 33.405 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8754 1520 8991 31643 47650 47650 1 NGLACLACGPQLEVVNSITGER ITLESVLRGKFAAGKNGLACLACGPQLEVV CGPQLEVVNSITGERLSAYRFSGVNEQPPV K N G E R L 2 1 2 0 2 1 2 3 0 1 3 0 0 0 1 1 1 0 0 2 0 0 22 0 2357.1468 Q8WYP5;Q96M44;C9J5C5 Q8WYP5 43 64 AHCTF1 Protein ELYS yes no 2 6.5232E-19 130.29 4 0.79794 1.1159 15.833 4 Median 0.79794 1.1159 15.833 4 0 Median NaN NaN NaN 0 0 Median 18842000 10595000 8247600 18842000 10595000 8247600 0 0 0 8755 1670 8992 31644;31645;31646;31647 47651;47652;47653;47654;47655;47656;47657;47658;47659 47653 9 NGLLFTYGVTGSGK DVVANPLVNDLIHGKNGLLFTYGVTGSGKT KNGLLFTYGVTGSGKTHTMTGSPGEGGLLP K N G G K T 0 0 1 0 0 0 0 4 0 0 2 1 0 1 0 1 2 0 1 1 0 0 14 0 1412.73 H7BYN4;Q02241;H0YME6 H7BYN4 105 118 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 0.0049504 96.82 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29969000 28283000 1686000 29969000 28283000 1686000 0 0 0 8756 1117 8993 31648;31649;31650 47660;47661;47662 47661 3 NGLSLAALK VSELITKAVAASKERNGLSLAALKKALAAG AASKERNGLSLAALKKALAAGGYDVEKNNS R N G L K K 2 0 1 0 0 0 0 1 0 0 3 1 0 0 0 1 0 0 0 0 0 0 9 0 885.52837 P16401 P16401 58 66 HIST1H1B Histone H1.5 yes yes 1;2 0.00077933 123.86 6 3 0.65378 0.83896 17.222 8 Median 0.67454 0.88083 6.318 6 0 Median 0.38231 0.60902 11.471 2 0 Median 607890000 377580000 230310000 462590000 271250000 191340000 145290000 106330000 38966000 8757 1273 8994 31651;31652;31653;31654;31655;31656;31657;31658;31659 47663;47664;47665;47666;47667;47668;47669;47670;47671;47672;47673;47674;47675;47676;47677;47678;47679;47680;47681;47682;47683;47684;47685;47686;47687 47666 24 NGLSLAALKK VSELITKAVAASKERNGLSLAALKKALAAG ASKERNGLSLAALKKALAAGGYDVEKNNSR R N G K K A 2 0 1 0 0 0 0 1 0 0 3 2 0 0 0 1 0 0 0 0 0 0 10 1 1013.6233 P16401 P16401 58 67 HIST1H1B Histone H1.5 yes yes 2 1.6283E-05 120.87 4 2 0.67255 0.81754 26.691 6 Median 0.69416 0.84637 5.4529 4 0 Median 0.3161 0.51147 4.626 2 0 Median 651500000 425520000 225990000 438870000 258250000 180610000 212640000 167260000 45373000 8758 1273 8995 31660;31661;31662;31663;31664;31665 47688;47689;47690;47691;47692;47693;47694;47695;47696;47697;47698;47699 47699 12 NGPGFHNDIDSNSTIQEILIPASK EQAKRLLGQIVDRCRNGPGFHNDIDSNSTI DSNSTIQEILIPASKVGLVIGRGGETIKQL R N G S K V 1 0 3 2 0 1 1 2 1 4 1 1 0 1 2 3 1 0 0 0 0 0 24 0 2566.2663 A0A024R8A7;Q96I24 A0A024R8A7 150 173 hCG_31253;FUBP3 Far upstream element-binding protein 3 yes no 3 0.0151 34.914 1 0.59905 0.76969 NaN 1 Median 0.59905 0.76969 NaN 1 0 Median NaN NaN NaN 0 0 Median 2544500 1092900 1451600 2544500 1092900 1451600 0 0 0 8759 194 8996 31666 47700 47700 1 NGPLEEDGERYDEDEEAAK RHSSPHQSEDEEDPRNGPLEEDGERYDEDE EEDGERYDEDEEAAKDRRNIRAPEWPRRAS R N G A K D 2 1 1 3 0 0 6 2 0 0 1 1 0 0 1 0 0 0 1 0 0 0 19 1 2164.9033 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6;B7Z255 P13807 665 683 GYS1 Glycogen [starch] synthase, muscle yes no 3 3.1793E-05 53.554 2 2 0.34096 0.47813 77.808 4 Median 0.69358 0.89218 1.9705 2 0 Median 0.1496 0.2338 14.934 2 0 Median 53014000 34998000 18015000 29011000 16212000 12799000 24002000 18786000 5216000 8760 1265 8997 31667;31668;31669;31670 47701;47702;47703;47704;47705;47706 47702 6 NGPLEVAGAAVSAGHGLPAK GGKEFVEAVLELRKKNGPLEVAGAAVSAGH VAGAAVSAGHGLPAKFVIHCNSPVWGADKC K N G A K F 5 0 1 0 0 0 1 4 1 0 2 1 0 0 2 1 0 0 0 2 0 0 20 0 1814.9639 O75367;Q59FH0;B4DJC3 O75367 252 271 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2;3 3.9667E-85 244.23 11 4 0.84165 1.1027 8.2185 13 Median 0.85738 1.1332 9.2061 9 0 Median 0.67082 1.0569 4.1473 4 0 Median 3360800000 1885300000 1475600000 2159900000 1172000000 987840000 1201000000 713260000 487720000 8761 1198 8998 31671;31672;31673;31674;31675;31676;31677;31678;31679;31680;31681;31682;31683;31684;31685 47707;47708;47709;47710;47711;47712;47713;47714;47715;47716;47717;47718;47719;47720;47721;47722;47723;47724;47725;47726;47727;47728;47729;47730;47731;47732;47733;47734;47735;47736;47737;47738;47739;47740;47741;47742;47743;47744;47745 47717 39 NGQDLGVAFK FANFESDEVELSYAKNGQDLGVAFKISKEV LSYAKNGQDLGVAFKISKEVLAGRPLFPHV K N G F K I 1 0 1 1 0 1 0 2 0 0 1 1 0 1 0 0 0 0 0 1 0 0 10 0 1047.5349 Q96BA7;B3KX72;B4DLR3;Q00839;Q7Z4Q5 Q96BA7 321 330 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U no no 2 9.6184E-17 156.75 5 2 0.408 0.50917 95.978 6 Median 0.38921 0.48899 4.3025 4 0 Median 2.0835 3.1509 0.60553 2 0 Median 188030000 124500000 63529000 158110000 114480000 43637000 29917000 10024000 19893000 8762 788 8999 31686;31687;31688;31689;31690;31691;31692 47746;47747;47748;47749;47750;47751;47752;47753;47754;47755;47756 47751 11 NGSFGVLVATNVAAR DIPQKQREITLKGFRNGSFGVLVATNVAAR NGSFGVLVATNVAARGLDIPEVDLVIQSSP R N G A R G 3 1 2 0 0 0 0 2 0 0 1 0 0 1 0 1 1 0 0 3 0 0 15 0 1474.7892 Q9NR30 Q9NR30 485 499 DDX21 Nucleolar RNA helicase 2 yes yes 2 2.413E-10 118.87 4 2 0.86156 1.1541 22.89 5 Median 0.90369 1.2071 17.896 4 0 Median 0.50984 0.79221 NaN 1 0 Median 125720000 85310000 40413000 69690000 40898000 28792000 56033000 44411000 11621000 8763 1756 9000 31693;31694;31695;31696;31697;31698 47757;47758;47759;47760;47761;47762;47763;47764;47765;47766;47767 47763 11 NGSLICTASK DDMHSDMIYNVSWNRNGSLICTASKDKKVR VSWNRNGSLICTASKDKKVRVIDPRKQEIV R N G S K D 1 0 1 0 1 0 0 1 0 1 1 1 0 0 0 2 1 0 0 0 0 0 10 0 1049.5175 B4DMH3;Q53G58;B3KN06;A0A024RBI5;Q59EA2;Q9ULV4;B7Z9V0;B4E3S0;F8VV53 B4DMH3 148 157 CORO1C Coronin;Coronin-1C yes no 2 2.6075E-11 140.45 3 1.4257 1.7701 6.6876 2 Median 1.4257 1.7701 6.6876 2 0 Median NaN NaN NaN 0 0 Median 37144000 13665000 23479000 37144000 13665000 23479000 0 0 0 8764 274 9001 31699;31700;31701 47768;47769;47770 47770 3 NGTGVLILSPTR IPAVELIVKLRFMPRNGTGVLILSPTRELA MPRNGTGVLILSPTRELAMQTFGVLKELMT R N G T R E 0 1 1 0 0 0 0 2 0 1 2 0 0 0 1 1 2 0 0 1 0 0 12 0 1226.6983 Q4ZG72;A0A024RAH8;Q9NVP1 Q4ZG72 126 137 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 6.6624E-10 117.14 2 2 0.78666 1.1428 18.127 4 Median 1.0057 1.3496 8.3648 2 0 Median 0.6373 0.99953 3.7811 2 0 Median 94604000 54383000 40220000 34386000 15584000 18801000 60218000 38799000 21419000 8765 242 9002 31702;31703;31704;31705 47771;47772;47773;47774;47775 47774 5 NGTLNIKQDDPFELFIAATNIR SHRKKRMRQLQKKIKNGTLNIKQDDPFELF QDDPFELFIAATNIRYCYYNETHKILGNTF K N G I R Y 2 1 3 2 0 1 1 1 0 3 2 1 0 2 1 0 2 0 0 0 0 0 22 1 2489.2914 Q05CW7;E9PMU0;E9PJN6;Q9H0A0 Q9H0A0 82 103 NAT10 N-acetyltransferase 10 no no 3 7.1624E-08 59.539 2 0.70726 0.93726 12.702 2 Median 0.70726 0.93726 12.702 2 0 Median NaN NaN NaN 0 0 Median 11590000 7201400 4388600 11590000 7201400 4388600 0 0 0 8766 1730;1443 9003 31706;31707 47776;47777;47778 47778 3 NGTLSVSDTTVGSK LMNKTLEDRLKIEAKNGTLSVSDTTVGSKQ KNGTLSVSDTTVGSKQLTFTLKRSEQQKKQ K N G S K Q 0 0 1 1 0 0 0 2 0 0 1 1 0 0 0 3 3 0 0 2 0 0 14 0 1364.6783 Q9BSC4 Q9BSC4 628 641 NOL10 Nucleolar protein 10 yes yes 2 8.2876E-07 95.094 3 1.0466 1.3168 4.2326 3 Median 1.0466 1.3168 4.2326 3 0 Median NaN NaN NaN 0 0 Median 35459000 18327000 17132000 35459000 18327000 17132000 0 0 0 8767 1710 9004 31708;31709;31710 47779;47780;47781;47782;47783 47781 5 NGVALTALDQDHVAVLGSPLAASK VKSLLLKAVVSGNARNGVALTALDQDHVAV QDHVAVLGSPLAASKECLSVWNIKFQTLQT R N G S K E 5 0 1 2 0 1 0 2 1 0 4 1 0 0 1 2 1 0 0 3 0 0 24 0 2346.2543 Q9H8H0;J3QR28 Q9H8H0 261 284 NOL11 Nucleolar protein 11 yes no 3 8.8605E-14 83.826 2 0.7596 0.96311 NaN 1 Median 0.7596 0.96311 NaN 1 0 Median NaN NaN NaN 0 0 Median 5974800 3222500 2752300 5974800 3222500 2752300 0 0 0 8768 1743 9005 31711;31712 47784;47785;47786;47787 47785 4 NHCVPPYSESK NELLQKAVITPDFEKNHCVPPYSESKYQLQ DFEKNHCVPPYSESKYQLQKKRRKERQKTA K N H S K Y 0 0 1 0 1 0 1 0 1 0 0 1 0 0 2 2 0 0 1 1 0 0 11 0 1316.5819 Q5QJE6 Q5QJE6 616 626 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 2 3.2502E-07 147.75 5 1 0.92582 1.1446 17.434 5 Median 0.93502 1.1636 6.0103 4 0 Median 0.59676 0.78509 NaN 1 0 Median 40571000 22179000 18392000 37854000 20359000 17495000 2717500 1820000 897540 8769 1561 9006 31713;31714;31715;31716;31717;31718 47788;47789;47790;47791;47792;47793;47794;47795;47796 47788 9 NHDEESLECLCR LTEAIMHDCVVKLLKNHDEESLECLCRLLT LLKNHDEESLECLCRLLTTIGKDLDFEKAK K N H C R L 0 1 1 1 2 0 3 0 1 0 2 0 0 0 0 1 0 0 0 0 0 0 12 0 1560.6297 E7EX73;B4DSI9;E9PGM1;E7EUU4;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637;C9JF13;B4DZE1;B4DH17;A0A0A0MSA7;A0A0U1RQK7;Q59GJ0;O43432 E7EX73 763 774 EIF4G1;EIF4G1 variant protein;EIF4G3 Eukaryotic translation initiation factor 4 gamma 1;Eukaryotic translation initiation factor 4 gamma 3 yes no 2;3 2.5001E-19 183.33 5 0.34575 0.46094 29.132 4 Median 0.34575 0.46094 29.132 4 0 Median NaN NaN NaN 0 0 Median 35256000 28514000 6742600 35256000 28514000 6742600 0 0 0 8770 747 9007 31719;31720;31721;31722;31723 47797;47798;47799;47800;47801;47802 47797 6 NHDFSAGLIIGGK ELAYQTFEVLRKVGKNHDFSAGLIIGGKDL GKNHDFSAGLIIGGKDLKHEAERINNINIL K N H G K D 1 0 1 1 0 0 0 3 1 2 1 1 0 1 0 1 0 0 0 0 0 0 13 0 1327.6884 Q13206;Q86VR6;E9PIF2;Q59EC7 Q13206 167 179 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 2 0.050704 35.71 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4595600 0 4595600 4595600 0 4595600 0 0 0 8771 1466 9008 31724 47803 47803 1 NHDHQEIAVPVANLK EGAKDECNVVEVVARNHDHQEIAVPVANLK NHDHQEIAVPVANLKLSCQPMLSLDDFQLQ R N H L K L 2 0 2 1 0 1 1 0 2 1 1 1 0 0 1 0 0 0 0 2 0 0 15 0 1683.8693 O75607 O75607 88 102 NPM3 Nucleoplasmin-3 yes yes 3 0.00039444 33.624 1 0.73456 0.90119 NaN 1 Median 0.73456 0.90119 NaN 1 0 Median NaN NaN NaN 0 0 Median 33483000 18663000 14820000 33483000 18663000 14820000 0 0 0 8772 1205 9009 31725 47804;47805 47804 2 NHDQHLLLLCDTCK STLPAVLYSCGICKKNHDQHLLLLCDTCKL KNHDQHLLLLCDTCKLHYHLGCLDPPLTRM K N H C K L 0 0 1 2 2 1 0 0 2 0 4 1 0 0 0 0 1 0 0 0 0 0 14 0 1765.824 A0A0U1RRH6;O94880;B4DG57 A0A0U1RRH6 734 747 PHF14 PHD finger protein 14 yes no 3 0.00065329 52.966 2 0.90184 1.131 NaN 1 Median 0.90184 1.131 NaN 1 0 Median NaN NaN NaN 0 0 Median 8867200 7076800 1790400 8867200 7076800 1790400 0 0 0 8773 487 9010 31726;31727 47806;47807;47808 47808 3 NHDTAISSHTVK STTKPLFSSGQFSMKNHDTAISSHTVKSVL SMKNHDTAISSHTVKSVLGQNSKLAEPLRK K N H V K S 1 0 1 1 0 0 0 0 2 1 0 1 0 0 0 2 2 0 0 1 0 0 12 0 1308.6422 Q8NG31;E9PPJ1 Q8NG31 738 749 CASC5 Protein CASC5 yes no 2 0.015621 41.283 1 0.56743 0.71547 NaN 1 Median 0.56743 0.71547 NaN 1 0 Median NaN NaN NaN 0 0 Median 2309600 1445800 863790 2309600 1445800 863790 0 0 0 8774 1656 9011 31728 47809;47810 47809 2 NHEIVPGSLIASIASLK RDDFRVLTAVEMGMKNHEIVPGSLIASIAS EIVPGSLIASIASLKHGGCNKVLRELVKHK K N H L K H 2 0 1 0 0 0 1 1 1 3 2 1 0 0 1 3 0 0 0 1 0 0 17 0 1747.9832 Q9BVS4 Q9BVS4 29 45 RIOK2 Serine/threonine-protein kinase RIO2 yes yes 2;3 2.7635E-09 118.72 5 0.82196 1.063 43.087 4 Linear 0.82196 1.063 43.087 4 0 Linear NaN NaN NaN 0 0 Median 10773000 6026100 4747000 10773000 6026100 4747000 0 0 0 8775 1721 9012 31729;31730;31731;31732;31733 47811;47812;47813;47814;47815;47816 47812 6 NHFAEIETELQAELVR KTSCADMQKMLFEERNHFAEIETELQAELV HFAEIETELQAELVRMEQQHQEKVLYLLSQ R N H V R M 2 1 1 0 0 1 4 0 1 1 2 0 0 1 0 0 1 0 0 1 0 0 16 0 1897.9534 Q59HG1;O95239;B3KNC0 Q59HG1 910 925 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2;3 1.3111E-36 174.4 8 3 0.83898 1.1407 16.419 8 Median 0.87007 1.1783 18.186 5 0 Median 0.67444 1.1005 2.9508 3 0 Plateau 331490000 189050000 142440000 214330000 120600000 93732000 117150000 68444000 48707000 8776 1216 9013 31734;31735;31736;31737;31738;31739;31740;31741;31742;31743;31744 47817;47818;47819;47820;47821;47822;47823;47824;47825;47826;47827;47828;47829;47830;47831;47832 47823 16 NHLETLSR FAKQSNNVLVYDLLKNHLETLSRVAEETIK LVYDLLKNHLETLSRVAEETIKDYFEARLA K N H S R V 0 1 1 0 0 0 1 0 1 0 2 0 0 0 0 1 1 0 0 0 0 0 8 0 968.50394 Q99549 Q99549 721 728 MPHOSPH8 M-phase phosphoprotein 8 yes yes 2 0.011105 71.379 2 0.56257 0.81541 1.6851 2 Median NaN NaN NaN 0 0 Median 0.56257 0.81541 1.6851 2 0 Median 13784000 8450500 5333000 0 0 0 13784000 8450500 5333000 8777 1705 9014 31745;31746 47833;47834 47833 2 NHMWIFVNALIENPTFDSQTK KKNKGGVAVKAHQVKNHMWIFVNALIENPT VNALIENPTFDSQTKENMTLQPKSFGSTCQ K N H T K E 1 0 3 1 0 1 1 0 1 2 1 1 1 2 1 1 2 1 0 1 0 0 21 0 2504.2158 P11388 P11388 358 378 TOP2A DNA topoisomerase 2-alpha yes yes 3 2.3356E-05 48.968 2 0.55722 0.87353 3.4084 2 Median NaN NaN NaN 0 0 Median 0.55722 0.87353 3.4084 2 0 Median 61806000 40891000 20915000 0 0 0 61806000 40891000 20915000 8778 1256 9015 31747;31748 47835;47836;47837 47837 516 3 NHPLYALK KHMDQPLPTAIGLYKNHPLYALKRHLLKYE TAIGLYKNHPLYALKRHLLKYEAIYPETAA K N H L K R 1 0 1 0 0 0 0 0 1 0 2 1 0 0 1 0 0 0 1 0 0 0 8 0 954.5287 A0A024R2M8;X5DRB1;A8K146;Q01831;D9I4E1;D2CPJ1;D2CPK7;D2CPK0;D2CPJ3;D2CPI8 A0A024R2M8 643 650 XPC DNA repair protein complementing XP-C cells no no 2 0.0048291 99.375 2 0.82031 1.017 3.3047 2 Median 0.82031 1.017 3.3047 2 0 Median NaN NaN NaN 0 0 Median 39288000 21339000 17948000 39288000 21339000 17948000 0 0 0 8779 89;976 9016 31749;31750 47838;47839 47839 2 NHQLYCNDCYLR CDLGGSSSGAEVRIRNHQLYCNDCYLRFKS RIRNHQLYCNDCYLRFKSGRPTAM______ R N H L R F 0 1 2 1 2 1 0 0 1 0 2 0 0 0 0 0 0 0 2 0 0 0 12 0 1654.698 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;E9PMT2 A0A1P7ZIM8 1277 1288 LMO7 LIM domain only protein 7 yes no 2;3 8.7612E-14 104.17 2 0.44173 0.60792 NaN 1 Median 0.44173 0.60792 NaN 1 0 Median NaN NaN NaN 0 0 Median 3874200 2353200 1521000 3874200 2353200 1521000 0 0 0 8780 525 9017 31751;31752 47840;47841 47840 2 NHVCQYYIYELQK AIEFLTLENEIFRKKNHVCQYYIYELQKRI KKNHVCQYYIYELQKRIAEMETQKEKIHED K N H Q K R 0 0 1 0 1 2 1 0 1 1 1 1 0 0 0 0 0 0 3 1 0 0 13 0 1756.8243 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83 Q9NTJ3 320 332 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 1.1734E-64 248.98 7 1 0.72007 0.90865 21.11 8 Median 0.72298 0.93043 8.8567 7 0 Median 0.35326 0.5364 NaN 1 0 Median 369990000 213820000 156170000 359710000 206510000 153200000 10288000 7313000 2974900 8781 1760 9018 31753;31754;31755;31756;31757;31758;31759;31760 47842;47843;47844;47845;47846;47847;47848;47849;47850;47851;47852;47853;47854;47855;47856;47857 47847 15 NIAIEFLTLENEIFRK VKMVEKEKDALEGEKNIAIEFLTLENEIFR IAIEFLTLENEIFRKKNHVCQYYIYELQKR K N I R K K 1 1 2 0 0 0 3 0 0 3 2 1 0 2 0 0 1 0 0 0 0 0 16 1 1949.0622 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83 Q9NTJ3 303 318 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 0.0044818 96.247 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3847500 3847500 0 3847500 3847500 0 0 0 0 8782 1760 9019 31761 47858 47858 1 NIDDGTSDRPYSHALVAGIDR VLAGRYSGRKAVIVKNIDDGTSDRPYSHAL SDRPYSHALVAGIDRYPRKVTAAMGKKKIA K N I D R Y 2 2 1 4 0 0 0 2 1 2 1 0 0 0 1 2 1 0 1 1 0 0 21 1 2271.088 E4W6B6;B2R4D8;A0A024R1V4;P61353;K7ELC7 E4W6B6 28 48 RPL27 60S ribosomal protein L27 yes no 3;4 4.1375E-30 117.48 7 1 0.73369 1.0017 6.4776 8 Median 0.72734 0.99117 5.6637 7 0 Median 0.75093 1.1216 NaN 1 0 Median 1309600000 757930000 551630000 1282900000 740770000 542160000 26625000 17158000 9467000 8783 72 9020 31762;31763;31764;31765;31766;31767;31768;31769 47859;47860;47861;47862;47863;47864;47865;47866;47867;47868;47869;47870;47871;47872;47873;47874;47875;47876 47874 18 NIDDGTSDRPYSHALVAGIDRYPR VLAGRYSGRKAVIVKNIDDGTSDRPYSHAL PYSHALVAGIDRYPRKVTAAMGKKKIAKRS K N I P R K 2 3 1 4 0 0 0 2 1 2 1 0 0 0 2 2 1 0 2 1 0 0 24 2 2687.3052 E4W6B6;B2R4D8;A0A024R1V4;P61353;K7ELC7 E4W6B6 28 51 RPL27 60S ribosomal protein L27 yes no 3;4 1.847E-28 99.441 6 0.75586 0.96479 9.9387 6 Median 0.75586 0.96479 9.9387 6 0 Median NaN NaN NaN 0 0 Median 1303100000 735470000 567590000 1303100000 735470000 567590000 0 0 0 8784 72 9021 31770;31771;31772;31773;31774;31775 47877;47878;47879;47880;47881;47882;47883;47884;47885;47886;47887 47887 11 NIDEHANEDVER ITNGKSFENISKWLRNIDEHANEDVERMLL WLRNIDEHANEDVERMLLGNKCDMDDKRVV R N I E R M 1 1 2 2 0 0 3 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 12 0 1439.6277 P61026;Q53T70 P61026 106 117 RAB10 Ras-related protein Rab-10 yes no 2 0.0013455 97.452 2 1 7.602 10.005 NaN 1 Median NaN NaN NaN 0 0 Median 7.602 10.005 NaN 1 0 Median 6623100 518280 6104800 2261900 0 2261900 4361200 518280 3842900 8785 1391 9022 31776;31777;31778 47888;47889;47890 47890 3 NIDINDVTPNCR VKVHPEGKFVVDVDKNIDINDVTPNCRVAL VDKNIDINDVTPNCRVALRNDSYTLHKILP K N I C R V 0 1 3 2 1 0 0 0 0 2 0 0 0 0 1 0 1 0 0 1 0 0 12 0 1429.662 Q59GS3;A0A140VJS3;P62195;J3QLH6;J3KRP2;J3QSA9;J3QRW1 Q59GS3 98 109 PSMC5 26S protease regulatory subunit 8 yes no 2 0.00073037 94.692 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8441300 8441300 0 8441300 8441300 0 0 0 0 8786 503 9023 31779;31780;31781 47891;47892;47893 47893 3 NIDNPALADIYTEHAHQVVVAK GNNFLYTNGKCVILRNIDNPALADIYTEHA ADIYTEHAHQVVVAKYAPSGFYIASGDVSG R N I A K Y 4 0 2 2 0 1 1 0 2 2 1 1 0 0 1 0 1 0 1 3 0 0 22 0 2417.2339 V9HWG7;Q53H17;Q53GN4;Q59ER5;O75083;D6RD66;B3KXN4;B4DS71 V9HWG7 44 65 HEL-S-52;WDR1 WD repeat-containing protein 1 yes no 3 1.874E-05 47.808 1 0.95807 1.2119 NaN 1 Median 0.95807 1.2119 NaN 1 0 Median NaN NaN NaN 0 0 Median 9214500 3463400 5751100 9214500 3463400 5751100 0 0 0 8787 1195 9024 31782 47894;47895 47895 2 NIEDVIAQGIGK DDDRLNKVISELNGKNIEDVIAQGIGKLAS NGKNIEDVIAQGIGKLASVPAGGAVAVSAA K N I G K L 1 0 1 1 0 1 1 2 0 3 0 1 0 0 0 0 0 0 0 1 0 0 12 0 1255.6772 A0A024RCA7;P05387;H0YDD8 A0A024RCA7 50 61 RPLP2 60S acidic ribosomal protein P2 yes no 2 1.7703E-11 153.97 3 2 0.8847 1.134 5.6671 5 Median 0.90987 1.141 0.66822 3 0 Median 0.64779 1.0297 0.43269 2 0 Median 303380000 176160000 127220000 146070000 76843000 69228000 157310000 99312000 57996000 8788 291 9025 31783;31784;31785;31786;31787 47896;47897;47898;47899;47900;47901;47902;47903;47904;47905 47898 10 NIEDYIHR DIQDVSMVVNYDMAKNIEDYIHRIGRTGRA VNYDMAKNIEDYIHRIGRTGRAGKSGVAIT K N I H R I 0 1 1 1 0 0 1 0 1 2 0 0 0 0 0 0 0 0 1 0 0 0 8 0 1058.5145 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56 B3KY11 724 731 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.014793 65.252 1 2 0.90835 1.2152 42.372 3 Median 0.44823 0.59069 NaN 1 0 Median 0.93076 1.2301 1.7235 2 0 Median 19112000 11044000 8068400 8711900 5582400 3129600 10400000 5461400 4938800 8789 45 9026 31788;31789;31790 47906;47907;47908;47909 47906 4 NIEEHASADVEK ITNEKSFDNIRNWIRNIEEHASADVEKMIL WIRNIEEHASADVEKMILGNKCDVNDKRQV R N I E K M 2 0 1 1 0 0 3 0 1 1 0 1 0 0 0 1 0 0 0 1 0 0 12 0 1340.6208 A0A024R7I3;P61006 A0A024R7I3 105 116 RAB8A Ras-related protein Rab-8A yes no 2 6.1692E-05 105.46 2 1 2.2029 2.9322 204.92 2 Median 0.54601 0.68847 NaN 1 0 Median 8.8875 12.488 NaN 1 0 Median 8997900 4809600 4188300 4739500 4170900 568560 4258400 638660 3619800 8790 178 9027 31791;31792;31793 47910;47911;47912;47913;47914 47914 5 NIEMTQEDVR DRGPVLEALVARAIRNIEMTQEDVRLIGLS ARAIRNIEMTQEDVRLIGLSATLPNYEDVA R N I V R L 0 1 1 1 0 1 2 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 10 0 1233.566 O75643;A4FU77;Q9H8B9 O75643 638 647 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.00054779 79.986 1 2 0.88095 1.2407 2.4297 2 Median NaN NaN NaN 0 0 Median 0.88095 1.2407 2.4297 2 0 Median 15795000 8131000 7664100 0 0 0 15795000 8131000 7664100 8791 1206 9028;9029 31794;31795;31796 47915;47916;47917;47918;47919 47919 445 5 NIETIINTFHQYSVK ______________________________ NIETIINTFHQYSVKLGHPDTLNQGEFKEL R N I V K L 0 0 2 0 0 1 1 0 1 3 0 1 0 1 0 1 2 0 1 1 0 0 15 0 1805.9312 B2R4M6;P06702 B2R4M6 11 25 S100A9 Protein S100;Protein S100-A9 yes no 2 0.0015449 74.698 2 1.0507 1.2786 NaN 1 Median 1.0507 1.2786 NaN 1 0 Median NaN NaN NaN 0 0 Median 4854300 3025500 1828800 4854300 3025500 1828800 0 0 0 8792 684 9030 31797;31798 47920;47921 47921 2 NIFAILQSVK TRTTILQSTGKNFSKNIFAILQSVKAREEG KNFSKNIFAILQSVKAREEGRAPEQRPAPN K N I V K A 1 0 1 0 0 1 0 0 0 2 1 1 0 1 0 1 0 0 0 1 0 0 10 0 1131.6652 Q6P1J9;B4DV47;A0A0S2Z5M9;A0A0S2Z5N1 Q6P1J9 248 257 CDC73 Parafibromin yes no 2 8.536E-07 145.46 4 1 0.68997 0.86165 12.317 4 Median 0.68997 0.86165 12.317 4 0 Median NaN NaN NaN 0 0 Median 78015000 42365000 35649000 71135000 42365000 28769000 6879900 0 6879900 8793 1590 9031 31799;31800;31801;31802;31803 47922;47923;47924;47925;47926;47927;47928;47929;47930 47924 9 NIGLGFK LLGETGKEKLPRYYKNIGLGFKTPKEAIEG EKLPRYYKNIGLGFKTPKEAIEGTYIDKKC K N I F K T 0 0 1 0 0 0 0 2 0 1 1 1 0 1 0 0 0 0 0 0 0 0 7 0 747.42792 P62280;M0QZC5 P62280 39 45 RPS11 40S ribosomal protein S11 yes no 1;2 0.029096 114.19 3 2 0.83385 1.0901 31.363 5 Median 0.8617 1.1021 1.8752 3 0 Median 0.39256 0.62604 4.726 2 0 Median 523850000 299650000 224200000 381210000 202960000 178250000 142630000 96687000 45946000 8794 1404 9032 31804;31805;31806;31807;31808 47931;47932;47933;47934;47935;47936;47937;47938;47939 47934 9 NIHAAAHQVR RKDKNLPNVIINEKRNIHAAAHQVRVLPYP INEKRNIHAAAHQVRVLPYPFTHHWQFERT R N I V R V 3 1 1 0 0 1 0 0 2 1 0 0 0 0 0 0 0 0 0 1 0 0 10 0 1115.5948 Q9BVJ6;B4E343 Q9BVJ6 674 683 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 0.01006 53.968 1 0.62528 0.75034 NaN 1 Median NaN NaN NaN 0 0 Median 0.62528 0.75034 NaN 1 0 Median 582850 383240 199610 0 0 0 582850 383240 199610 8795 1719 9033 31809 47940 47940 1 NIHLNLDRR EEDIHDKFAEYGEIKNIHLNLDRRTGYLKG EYGEIKNIHLNLDRRTGYLKGYTLVEYETY K N I R R T 0 2 2 1 0 0 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 9 1 1149.6367 A0A023T787;Q9Y5S9;A0A0J9YW13 A0A023T787 101 109 RBM8;RBM8A RNA-binding protein 8A yes no 3 0.01691 34.206 1 0.44059 0.58222 NaN 1 Median 0.44059 0.58222 NaN 1 0 Median NaN NaN NaN 0 0 Median 5728600 3467800 2260800 5728600 3467800 2260800 0 0 0 8796 2 9034 31810 47941 47941 1 NIHPIYNIK SGLKEVRKVVLDTMKNIHPIYNIKSLMIKR VLDTMKNIHPIYNIKSLMIKRELAKDSELR K N I I K S 0 0 2 0 0 0 0 0 1 3 0 1 0 0 1 0 0 0 1 0 0 0 9 0 1110.6186 Q13601 Q13601 212 220 KRR1 KRR1 small subunit processome component homolog yes yes 2 5.1558E-05 151.29 2 1 0.91515 1.1364 8.685 3 Median 0.93712 1.1766 4.9215 2 0 Median 0.67535 1.0251 NaN 1 0 Median 77206000 40893000 36313000 58045000 29846000 28199000 19161000 11047000 8113400 8797 1473 9035 31811;31812;31813 47942;47943;47944;47945;47946 47943 5 NIILEEGK KRKKAVLFCLSEDKKNIILEEGKEILVGDV CLSEDKKNIILEEGKEILVGDVGQTVDDPY K N I G K E 0 0 1 0 0 0 2 1 0 2 1 1 0 0 0 0 0 0 0 0 0 0 8 0 914.5073 G3V1A4;V9HWI5;E9PK25;P23528;E9PP50;E9PLJ3;B4E112;E9PQB7;E9PS23 G3V1A4 29 36 CFL1;HEL-S-15 Cofilin-1 yes no 2 0.022172 57.177 1 2 0.79307 0.9896 NaN 1 Median 0.79307 0.9896 NaN 1 0 Median NaN NaN NaN 0 0 Median 22914000 8274300 14640000 16292000 8274300 8017400 6622300 0 6622300 8798 1037 9036 31814;31815;31816 47947;47948;47949 47949 3 NIILTTMPAGTK IIKGNLGANLSGLGRNIILTTMPAGTKLIA LGRNIILTTMPAGTKLIAGNKPVSFLTAQQ R N I T K L 1 0 1 0 0 0 0 1 0 2 1 1 1 0 1 0 3 0 0 0 0 0 12 0 1258.6955 A0A024R3K9;A0A024R3N2;Q6P4R8 A0A024R3K9 1220 1231 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2 0.048458 40.496 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1913400 1913400 0 0 0 0 1913400 1913400 0 8799 101 9037 31817 47950 47950 1 NIINEEDADTMR KYLCECQFDDNLKFKNIINEEDADTMRLQP KFKNIINEEDADTMRLQPIGRDKDGLMYWY K N I M R L 1 1 2 2 0 0 2 0 0 2 0 0 1 0 0 0 1 0 0 0 0 0 12 0 1419.63 Q96T23;H0YER1;Q05DG0;H7C306 Q96T23 139 150 RSF1 Remodeling and spacing factor 1 yes no 2 0.0036785 48.284 1 1.0048 1.3369 NaN 1 Median NaN NaN NaN 0 0 Median 1.0048 1.3369 NaN 1 0 Median 4841400 2160200 2681100 0 0 0 4841400 2160200 2681100 8800 1702 9038 31818 47951;47952 47951 765 2 NIIQQAIDAGEVPSYNAFVK ESVLCVQYTEEPRIRNIIQQAIDAGEVPSY AIDAGEVPSYNAFVKESTQKMNAKKRRAQE R N I V K E 3 0 2 1 0 2 1 1 0 3 0 1 0 1 1 1 0 0 1 2 0 0 20 0 2176.1164 Q2VIL4;A0A024QZN2;Q8WXX5 Q2VIL4 153 172 hCG_2024613;DNAJC9 DnaJ homolog subfamily C member 9 yes no 2 1.9814E-07 115.68 2 0.81488 1.0112 NaN 1 Median 0.81488 1.0112 NaN 1 0 Median NaN NaN NaN 0 0 Median 930300 487240 443060 930300 487240 443060 0 0 0 8801 16 9039 31819;31820 47953;47954;47955 47953 3 NIITNLSK NFFKDWRKEMTNEEKNIITNLSKCDFTQMS EMTNEEKNIITNLSKCDFTQMSQYFKAQTE K N I S K C 0 0 2 0 0 0 0 0 0 2 1 1 0 0 0 1 1 0 0 0 0 0 8 0 901.52328 P11387;B9EG90 P11387 292 299 TOP1 DNA topoisomerase 1 yes no 1;2 0.0013119 141.52 3 2 0.8351 1.1819 18.178 4 Median 0.80713 1.0032 5.2601 2 0 Median 0.85331 1.3669 2.6436 2 0 Median 140540000 74977000 65564000 28427000 13768000 14659000 112110000 61208000 50906000 8802 1255 9040 31821;31822;31823;31824;31825 47956;47957;47958;47959;47960 47957 5 NIIVFYGSQTGTAEEFANR VRESSFVEKMKKTGRNIIVFYGSQTGTAEE FYGSQTGTAEEFANRLSKDAHRYGMRGMSA R N I N R L 2 1 2 0 0 1 2 2 0 2 0 0 0 2 0 1 2 0 1 1 0 0 19 0 2116.0225 B2R6E5;A8K3B4;Q59ED7;H0Y4R2;P16435;Q63HL4;C9JU80 B2R6E5 82 100 POR;DKFZp686G04235 NADPH--cytochrome P450 reductase yes no 2 6.6E-40 180.84 5 0.60435 0.83761 19.864 3 Plateau 0.60435 0.83761 19.864 3 0 Plateau NaN NaN NaN 0 0 Median 10720000 5367500 5352400 10720000 5367500 5352400 0 0 0 8803 592 9041 31826;31827;31828;31829;31830 47961;47962;47963;47964;47965;47966;47967;47968 47962 8 NILDSKPTANK GYIPGKNRDLKVVKKNILDSKPTANKKCDL VVKKNILDSKPTANKKCDLISIPKKTTDTA K N I N K K 1 0 2 1 0 0 0 0 0 1 1 2 0 0 1 1 1 0 0 0 0 0 11 1 1199.651 B4DMH3;Q53G58;B3KN06;A0A024RBI5;Q59EA2;Q9ULV4;B7Z9V0;B4E3S0;H0YHL7 B4DMH3 371 381 CORO1C Coronin;Coronin-1C yes no 2;3 2.2183E-11 152.54 8 2 1.3339 1.6431 34.982 10 Median 1.289 1.5808 9.22 8 0 Median 2.4467 3.5769 4.0015 2 0 Median 338170000 145620000 192560000 330980000 143510000 187470000 7193200 2105200 5088000 8804 274 9042 31831;31832;31833;31834;31835;31836;31837;31838;31839;31840 47969;47970;47971;47972;47973;47974;47975;47976;47977;47978;47979;47980;47981;47982;47983;47984;47985 47977 17 NILDSKPTANKK GYIPGKNRDLKVVKKNILDSKPTANKKCDL VKKNILDSKPTANKKCDLISIPKKTTDTAS K N I K K C 1 0 2 1 0 0 0 0 0 1 1 3 0 0 1 1 1 0 0 0 0 0 12 2 1327.746 B4DMH3;Q53G58;B3KN06;A0A024RBI5;Q59EA2;Q9ULV4;B7Z9V0;B4E3S0;H0YHL7 B4DMH3 371 382 CORO1C Coronin;Coronin-1C yes no 2;3 0.00084923 82.417 2 1.2664 1.4994 1.6843 2 Median 1.2664 1.4994 1.6843 2 0 Median NaN NaN NaN 0 0 Median 38717000 15874000 22843000 38717000 15874000 22843000 0 0 0 8805 274 9043 31841;31842 47986;47987 47987 2 NILEESLCELVAK AEVLGLILRYVMERKNILEESLCELVAKQL RKNILEESLCELVAKQLKQHQNTMEDKFIV K N I A K Q 1 0 1 0 1 0 3 0 0 1 3 1 0 0 0 1 0 0 0 1 0 0 13 0 1516.7807 P78527 P78527 2335 2347 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.4713E-10 115.57 1 1 0.5367 0.73708 25.571 2 Median 0.48209 0.61516 NaN 1 0 Median 0.5975 0.88317 NaN 1 0 Median 20974000 13947000 7027000 14785000 9829200 4956300 6188700 4117900 2070800 8806 1427 9044 31843;31844 47988;47989 47988 2 NILFVITKPDVYK RQVTGVTRVTIRKSKNILFVITKPDVYKSP SKNILFVITKPDVYKSPASDTYIVFGEAKI K N I Y K S 0 0 1 1 0 0 0 0 0 2 1 2 0 1 1 0 1 0 1 2 0 0 13 1 1548.8916 F8W1N5;F8VZJ2;F8VNW4;F8W0W4;H0YHX9;A0A024RB41;Q13765;E9PAV3;F8VZ58;A8K6N6;Q9BZK3 F8W1N5 22 34 NACA;hCG_2016482;NACAP1 Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Putative nascent polypeptide-associated complex subunit alpha-like protein yes no 2 0.00027795 99.539 4 1 0.27143 0.3363 2.4196 4 Median 0.27143 0.3363 2.4196 4 0 Median NaN NaN NaN 0 0 Median 34291000 23941000 10350000 30929000 23941000 6988400 3361800 0 3361800 8807 260 9045 31845;31846;31847;31848;31849 47990;47991;47992;47993;47994;47995 47994 6 NILLTIGSYK YLKAMLSTGFKIPKKNILLTIGSYKNKSEL KIPKKNILLTIGSYKNKSELLPTVRLLESL K N I Y K N 0 0 1 0 0 0 0 1 0 2 2 1 0 0 0 1 1 0 1 0 0 0 10 0 1120.6492 Q53SY7;F8VPD4;P27708 Q53SY7 1240 1249 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.0036564 66.621 1 0.2684 0.34364 NaN 1 Median 0.2684 0.34364 NaN 1 0 Median NaN NaN NaN 0 0 Median 3861200 2617300 1243900 3861200 2617300 1243900 0 0 0 8808 1060 9046 31850 47996 47996 1 NILMFTGETEATK KKLLEQRAQYVEKTKNILMFTGETEATKEK TKNILMFTGETEATKEKKRGGGGGRRSKKG K N I T K E 1 0 1 0 0 0 2 1 0 1 1 1 1 1 0 0 3 0 0 0 0 0 13 0 1453.7123 A8K6X9;Q6PD62 A8K6X9 887 899 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2 0.00067621 78.692 1 3 3.084 4.5566 80.921 4 Median 0.82745 1.0153 NaN 1 0 Median 3.404 5.0135 18.204 3 0 Median 22565000 5540300 17025000 843110 450490 392610 21722000 5089800 16632000 8809 629 9047 31851;31852;31853;31854 47997;47998;47999;48000;48001 48000 209 4 NILSVVGTDALK TLFGEGPAERRERLRNILSVVGTDALKKTK RLRNILSVVGTDALKKTKKDDEKSKKSKEE R N I L K K 1 0 1 1 0 0 0 1 0 1 2 1 0 0 0 1 1 0 0 2 0 0 12 0 1228.7027 Q6IAP9;Q5T1M7;B2R7V4;Q59EL4;O43172 Q6IAP9 134 145 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes no 2 0.036679 34.755 1 0.70815 1.0431 NaN 1 Median NaN NaN NaN 0 0 Median 0.70815 1.0431 NaN 1 0 Median 7638100 4147400 3490700 0 0 0 7638100 4147400 3490700 8810 708 9048 31855 48002 48002 1 NINAYVVFK KKLAAIKRKIHPDQKNINAYVVFKEESAAT IHPDQKNINAYVVFKEESAATQALKRNGAQ K N I F K E 1 0 2 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 1 2 0 0 9 0 1066.5811 P42696;A2A2V2 P42696 243 251 RBM34 RNA-binding protein 34 yes no 2 0.004336 86.953 2 2 0.8328 1.1384 13.015 4 Median 1.035 1.2931 6.7317 2 0 Median 0.69337 1.0431 1.0881 2 0 Median 59255000 31363000 27892000 37363000 19241000 18121000 21892000 12121000 9770900 8811 1339 9049 31856;31857;31858;31859 48003;48004;48005;48006;48007;48008 48005 6 NINNAFGPGTANER LFEFKMGRKAAETTRNINNAFGPGTANERT RNINNAFGPGTANERTVQWWFKKFCKGDES R N I E R T 2 1 4 0 0 0 1 2 0 1 0 0 0 1 1 0 1 0 0 0 0 0 14 0 1473.6961 B9ZVV8;B4DND2;Q96H41;Q53H47 B9ZVV8 135 148 SETMAR Histone-lysine N-methyltransferase SETMAR;Histone-lysine N-methyltransferase;Transposon Hsmar1 transposase yes no 2 7.9813E-05 87.667 3 0.57404 0.7936 NaN 1 Median 0.57404 0.7936 NaN 1 0 Median NaN NaN NaN 0 0 Median 7594900 6263000 1331900 7594900 6263000 1331900 0 0 0 8812 836 9050 31860;31861;31862 48009;48010;48011 48011 3 NINTFVETPVQK GKAMDTPKPAVSDEKNINTFVETPVQKLDL DEKNINTFVETPVQKLDLLGNLPGSKRQPQ K N I Q K L 0 0 2 0 0 1 1 0 0 1 0 1 0 1 1 0 2 0 0 2 0 0 12 0 1388.73 P46013 P46013 2399 2410 MKI67 Antigen KI-67 yes yes 2 8.0138E-25 197.79 5 2 0.94714 1.2529 13.44 7 Median 0.92247 1.1787 7.8042 5 0 Median 0.96697 1.5271 0.8926 2 0 Median 666750000 338460000 328290000 319610000 162820000 156790000 347140000 175640000 171500000 8813 1342 9051 31863;31864;31865;31866;31867;31868;31869 48012;48013;48014;48015;48016;48017;48018;48019;48020;48021;48022;48023;48024;48025;48026;48027;48028;48029;48030;48031;48032;48033;48034;48035;48036;48037 48012 25 NIPAFLPNVLSLK RHSVASLESIVNEAKNIPAFLPNVLSLKEA AKNIPAFLPNVLSLKEALQKAREWTAKVEA K N I L K E 1 0 2 0 0 0 0 0 0 1 3 1 0 1 2 1 0 0 0 1 0 0 13 0 1424.8391 E7EV89;B4DVX3;B4DVM9;P29375 E7EV89 602 614 KDM5A Lysine-specific demethylase 5A yes no 2 0.00096599 59.542 1 0.64047 0.81982 NaN 1 Median 0.64047 0.81982 NaN 1 0 Median NaN NaN NaN 0 0 Median 3675700 2358100 1317600 3675700 2358100 1317600 0 0 0 8814 862 9052 31870 48038 48038 1 NIPGITLLNVSK CIIYNEDNGIIKAFRNIPGITLLNVSKLNI AFRNIPGITLLNVSKLNILKLAPGGHVGRF R N I S K L 0 0 2 0 0 0 0 1 0 2 2 1 0 0 1 1 1 0 0 1 0 0 12 0 1267.75 P36578;Q59GY2;H3BM89;B4DMJ6;Q53G74;B4DMJ2 P36578 223 234 RPL4 60S ribosomal protein L4 yes no 2 2.1663E-36 179.31 9 2 0.71783 0.98297 4.3765 6 Median 0.7212 0.95287 3.6302 4 0 Median 0.65252 1.0264 0.44242 2 0 Median 3820400000 2248300000 1572100000 2950600000 1699800000 1250900000 869720000 548530000 321180000 8815 1325 9053 31871;31872;31873;31874;31875;31876;31877;31878;31879;31880;31881 48039;48040;48041;48042;48043;48044;48045;48046;48047;48048;48049;48050;48051;48052;48053;48054;48055;48056;48057;48058;48059;48060;48061 48049 23 NIPPYFVALVPQEEELDDQK LEKEVAALCRYTPRRNIPPYFVALVPQEEE FVALVPQEEELDDQKIQVTPPGFQLVFLPF R N I Q K I 1 0 1 2 0 2 3 0 0 1 2 1 0 1 3 0 0 0 1 2 0 0 20 0 2343.1634 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356;Q6IC76 A0A024R1N4 405 424 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 2 5.2486E-31 144.8 4 2 0.59107 0.75538 15.986 6 Median 0.56831 0.72918 5.7016 4 0 Median 0.60767 0.96896 5.5107 2 0 Median 351250000 223460000 127790000 271580000 173350000 98232000 79669000 50113000 29557000 8816 62 9054 31882;31883;31884;31885;31886;31887 48062;48063;48064;48065;48066;48067;48068;48069;48070 48065 9 NIQGTITGDILPR SFLPQNKEEIERTIKNIQGTITGDILPRLH IKNIQGTITGDILPRLHKCLASTTKREEEH K N I P R L 0 1 1 1 0 1 0 2 0 3 1 0 0 0 1 0 2 0 0 0 0 0 13 0 1396.7674 O75691 O75691 1778 1790 UTP20 Small subunit processome component 20 homolog yes yes 2 3.5062E-13 132.91 3 2 0.9146 1.3293 6.0199 5 Median 1.0709 1.4346 7.3165 3 0 Plateau 0.8983 1.2914 4.0972 2 0 Median 68798000 37092000 31705000 42778000 23597000 19181000 26020000 13495000 12525000 8817 1207 9055 31888;31889;31890;31891;31892 48071;48072;48073;48074;48075;48076;48077;48078;48079 48075 9 NISELFYYAQK PEIETCVECSAKNLRNISELFYYAQKAVLH KNLRNISELFYYAQKAVLHPTAPLYDPEAK R N I Q K A 1 0 1 0 0 1 1 0 0 1 1 1 0 1 0 1 0 0 2 0 0 0 11 0 1374.682 Q8IXI1;H3BST5;I3L2C6 Q8IXI1 154 164 RHOT2 Mitochondrial Rho GTPase 2 no no 2 0.0048385 64.711 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2545200 2545200 0 2545200 2545200 0 0 0 0 8818 1626 9056 31893 48080 48080 1 NISENADFFASLQLSESAAR LDFSGLSPYERKRLKNISENADFFASLQLS ADFFASLQLSESAARLREMIEKRQPPKSKR K N I A R L 4 1 2 1 0 1 2 0 0 1 2 0 0 2 0 4 0 0 0 0 0 0 20 0 2169.0338 A0A0C4DFX7;Q9H967;C9JE56 A0A0C4DFX7 105 124 WDR76 WD repeat-containing protein 76 yes no 2 0.0010224 40.552 1 0.74957 1.0256 NaN 1 Median 0.74957 1.0256 NaN 1 0 Median NaN NaN NaN 0 0 Median 4303000 2465000 1837900 4303000 2465000 1837900 0 0 0 8819 421 9057 31894 48081 48081 1 NISHDTFGTTYGR LSMKMPKALKPKKKKNISHDTFGTTYGRIH KKNISHDTFGTTYGRIHMQKQDLSKLQTRK K N I G R I 0 1 1 1 0 0 0 2 1 1 0 0 0 1 0 1 3 0 1 0 0 0 13 0 1467.6743 A8K800;Q9H7B2 A8K800 253 265 RPF2 Ribosome production factor 2 homolog yes no 2;3 9.8229E-26 220.29 7 3 0.74501 1.0887 9.5365 10 Median 0.78364 1.082 11.614 7 0 Median 0.7228 1.1137 1.915 3 0 Median 478470000 267090000 211380000 389870000 215660000 174200000 88605000 51424000 37181000 8820 637 9058 31895;31896;31897;31898;31899;31900;31901;31902;31903;31904 48082;48083;48084;48085;48086;48087;48088;48089;48090;48091;48092;48093;48094;48095;48096 48088 15 NISMSVEGDYTYLR PVFGIATPFHIATIKNISMSVEGDYTYLRI KNISMSVEGDYTYLRINFYCPGSALGRNEG K N I L R I 0 1 1 1 0 0 1 1 0 1 1 0 1 0 0 2 1 0 2 1 0 0 14 0 1646.761 Q9Y5B9 Q9Y5B9 556 569 SUPT16H FACT complex subunit SPT16 yes yes 2 8.0617E-15 151.55 8 2 0.74146 1.0559 16.682 6 Median 0.84906 1.1413 20.078 4 0 Median 0.63069 1.0268 1.4805 2 0 Median 192210000 115370000 76843000 49002000 27108000 21894000 143210000 88257000 54949000 8821 1829 9059;9060 31905;31906;31907;31908;31909;31910;31911;31912;31913;31914 48097;48098;48099;48100;48101;48102;48103;48104;48105;48106;48107;48108;48109;48110;48111 48101 858 15 NISQELNMEQK DSSSSKEDENEAERKNISQELNMEQKNPKK AERKNISQELNMEQKNPKK___________ K N I Q K N 0 0 2 0 0 2 2 0 0 1 1 1 1 0 0 1 0 0 0 0 0 0 11 0 1332.6344 A0A0U1RRH6 A0A0U1RRH6 934 944 yes yes 2 0.001106 66.683 2 0.87029 1.32 NaN 1 Median NaN NaN NaN 0 0 Median 0.87029 1.32 NaN 1 0 Median 20366000 6565600 13800000 0 0 0 20366000 6565600 13800000 8822 487 9061 31915;31916 48112;48113;48114 48113 171 3 NISVASCNSSQVVVAVGR EPKALVSEWKEPQAKNISVASCNSSQVVVA VASCNSSQVVVAVGRALYYLQIHPQELRQI K N I G R A 2 1 2 0 1 1 0 1 0 1 0 0 0 0 0 4 0 0 0 5 0 0 18 0 1845.9367 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 497 514 DDB1 DNA damage-binding protein 1 yes no 2 1.9024E-83 236.42 6 1 0.82509 1.0959 21.822 5 Median 0.83909 1.1161 8.6855 4 0 Median 0.48163 0.72841 NaN 1 0 Median 86926000 48142000 38784000 70080000 37494000 32586000 16846000 10648000 6198400 8823 1520 9062 31917;31918;31919;31920;31921;31922;31923 48115;48116;48117;48118;48119;48120;48121;48122;48123;48124;48125;48126;48127;48128;48129;48130 48118 16 NITLDDASAPR AVAAPRPDRLVNRLKNITLDDASAPRLMVL NRLKNITLDDASAPRLMVLRQPRGPDNSMG K N I P R L 2 1 1 2 0 0 0 0 0 1 1 0 0 0 1 1 1 0 0 0 0 0 11 0 1171.5833 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;E9PLT0;Q9UG93;Q8WU01 Q9GZV0 728 738 CSDE1;DKFZp586J0620 Cold shock domain-containing protein E1 yes no 2 0.0066427 59.426 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18644000 0 18644000 0 0 0 18644000 0 18644000 8824 31 9063 31924;31925 48131;48132 48132 2 NITRPFEDQTSLEFFSK VYALKKPYGVLYKKKNITRPFEDQTSLEFF TRPFEDQTSLEFFSKKSDCSLFMFGSHNKK K N I S K K 0 1 1 1 0 1 2 0 0 1 1 1 0 3 1 2 2 0 0 0 0 0 17 1 2058.0058 A8K800;Q9H7B2;Q5VXN0 A8K800 67 83 RPF2 Ribosome production factor 2 homolog yes no 2;3 4.1445E-10 133.47 8 1 0.74978 0.99783 6.3259 9 Median 0.7692 1.0144 6.7165 8 0 Median 0.56074 0.99783 NaN 1 0 Median 645140000 368690000 276460000 591790000 333250000 258540000 53356000 35436000 17920000 8825 637 9064 31926;31927;31928;31929;31930;31931;31932;31933;31934 48133;48134;48135;48136;48137;48138;48139;48140;48141;48142;48143;48144;48145;48146;48147;48148 48138 16 NITYLPAGQSVLLQLPQ LEAAEDIAYQLSRSRNITYLPAGQSVLLQL TYLPAGQSVLLQLPQ_______________ R N I P Q - 1 0 1 0 0 3 0 1 0 1 4 0 0 0 2 1 1 0 1 1 0 0 17 0 1854.0251 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0 Q6PUJ7 256 272 HEL-S-54e;PHB Prohibitin yes no 2 0.013149 78.705 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45455000 0 0 45455000 0 0 0 0 0 8826 600 9065 31935 48149 48149 1 NIVEAAAVR RCVPKDKAIKKFVIRNIVEAAAVRDISEAS KKFVIRNIVEAAAVRDISEASVFDAYVLPK R N I V R D 3 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 2 0 0 9 0 941.52943 A0A024RB14;P62854;Q5JNZ5;Q75MH1;Q76N57 A0A024RB14 43 51 RPS26;RPS26P11 40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1 yes no 2 0.0014349 112.41 8 2 0.85051 1.1593 19.226 9 Median 0.90435 1.2508 9.3874 7 0 Median 0.48514 0.81102 0.0090008 2 0 Median 6172900000 3418300000 2754600000 5053400000 2675700000 2377700000 1119500000 742610000 376920000 8827 255 9066 31936;31937;31938;31939;31940;31941;31942;31943;31944;31945 48150;48151;48152;48153;48154;48155;48156;48157;48158;48159;48160;48161;48162;48163;48164;48165;48166;48167;48168;48169;48170;48171;48172 48155 23 NIVEAAAVRDISEASVFDAYVLPK RCVPKDKAIKKFVIRNIVEAAAVRDISEAS DISEASVFDAYVLPKLYVKLHYCVSCAIHS R N I P K L 5 1 1 2 0 0 2 0 0 2 1 1 0 1 1 2 0 0 1 4 0 0 24 1 2576.3486 A0A024RB14;P62854;Q75MH1 A0A024RB14 43 66 RPS26 40S ribosomal protein S26 yes no 3 0.009113 24.153 1 1.4859 1.9083 NaN 1 Median 1.4859 1.9083 NaN 1 0 Median NaN NaN NaN 0 0 Median 6097800 1988700 4109200 6097800 1988700 4109200 0 0 0 8828 255 9067 31946 48173 48173 1 NIVQHTTDSSLEEK KDSKEFTQKNKKEKKNIVQHTTDSSLEEKQ KNIVQHTTDSSLEEKQRTLDSGTSEIVKSP K N I E K Q 0 0 1 1 0 1 2 0 1 1 1 1 0 0 0 2 2 0 0 1 0 0 14 0 1599.774 Q9H501;Q05C10;A0JLU5;Q8IWH6 Q9H501 171 184 ESF1 ESF1 homolog yes no 2 1.2244E-60 234.24 3 2 0.78149 1.0288 19.372 4 Median 0.94684 1.1995 1.2133 2 0 Median 0.62543 0.86064 4.7426 2 0 Median 20759000 9198700 11560000 12218000 4231800 7986000 8541100 4966900 3574200 8829 1734 9068 31947;31948;31949;31950;31951 48174;48175;48176;48177;48178;48179;48180;48181;48182 48174 9 NIYAFMGTPVQK GKAMHTPKPAVSGEKNIYAFMGTPVQKLDL GEKNIYAFMGTPVQKLDLTENLTGSKRRLQ K N I Q K L 1 0 1 0 0 1 0 1 0 1 0 1 1 1 1 0 1 0 1 1 0 0 12 0 1367.6908 P46013 P46013 1550 1561 MKI67 Antigen KI-67 yes yes 2 0.00016737 117.71 2 2 1.0199 1.6492 25.77 3 Plateau 0.82113 1.0389 NaN 1 0 Median 1.0103 1.6169 4.9069 2 0 Median 123080000 59222000 63854000 21194000 8100100 13094000 101880000 51122000 50760000 8830 1342 9069;9070 31952;31953;31954;31955 48183;48184;48185;48186;48187;48188 48185 577 6 NIYSEELR ENRLQTMKEELDFQKNIYSEELRETKRRHE EELDFQKNIYSEELRETKRRHETRLVEIDN K N I L R E 0 1 1 0 0 0 2 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 8 0 1022.5033 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;Q5TCI8;H0YAB0 P02545 209 216 LMNA Prelamin-A/C;Lamin-A/C yes no 1;2 1.9708E-10 158.07 3 2 0.73627 1.0134 53.011 3 Median 0.73197 1.0078 0.78494 2 0 Median 1.6346 2.5241 NaN 1 0 Median 137360000 64033000 73324000 98201000 55273000 42929000 39156000 8760400 30395000 8831 1229 9071 31956;31957;31958;31959;31960 48189;48190;48191;48192;48193;48194;48195 48191 7 NIYSEELRETK ENRLQTMKEELDFQKNIYSEELRETKRRHE DFQKNIYSEELRETKRRHETRLVEIDNGKQ K N I T K R 0 1 1 0 0 0 3 0 0 1 1 1 0 0 0 1 1 0 1 0 0 0 11 1 1380.6885 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;Q5TCI8;H0YAB0 P02545 209 219 LMNA Prelamin-A/C;Lamin-A/C yes no 2 0.005418 101.97 2 2 1.0237 1.5077 62.768 4 Median 0.66317 0.87619 1.2288 2 0 Median 1.5888 2.5983 1.4465 2 0 Median 133500000 71497000 62005000 98446000 59124000 39323000 35055000 12373000 22682000 8832 1229 9072 31961;31962;31963;31964 48196;48197;48198;48199;48200 48197 5 NIYVLQELDNPGAK VFYGTEKDKNSVNFKNIYVLQELDNPGAKR KNIYVLQELDNPGAKRILELDQFKGQQGQK K N I A K R 1 0 2 1 0 1 1 1 0 1 2 1 0 0 1 0 0 0 1 1 0 0 14 0 1572.8148 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32 A0A024R1N4 101 114 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 1.1391E-65 217.02 7 2 0.56797 0.74362 40.606 7 Median 0.55777 0.72382 37.147 5 0 Median 0.68583 1.0926 0.089871 2 0 Median 535530000 340970000 194570000 390810000 252230000 138590000 144720000 88738000 55983000 8833 62 9073 31965;31966;31967;31968;31969;31970;31971;31972;31973 48201;48202;48203;48204;48205;48206;48207;48208;48209;48210;48211;48212;48213;48214;48215;48216;48217;48218;48219 48209 19 NIYVLQELDNPGAKR VFYGTEKDKNSVNFKNIYVLQELDNPGAKR NIYVLQELDNPGAKRILELDQFKGQQGQKR K N I K R I 1 1 2 1 0 1 1 1 0 1 2 1 0 0 1 0 0 0 1 1 0 0 15 1 1728.9159 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32 A0A024R1N4 101 115 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 2.4857E-05 72.652 1 0.91081 1.1344 NaN 1 Median 0.91081 1.1344 NaN 1 0 Median NaN NaN NaN 0 0 Median 2774500 1369700 1404800 2774500 1369700 1404800 0 0 0 8834 62 9074 31974 48220 48220 1 NKEEAAEYAK HKRRRIALKKQRTKKNKEEAAEYAKLLAKR QRTKKNKEEAAEYAKLLAKRMKEAKEKRQE K N K A K L 3 0 1 0 0 0 3 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 10 1 1151.5459 Q96DV6;A2A3R6;P62753;A2A3R5 Q96DV6 202 211 RPS6 40S ribosomal protein S6 yes no 2 0.009289 107.79 1 0.17808 0.21957 NaN 1 Median 0.17808 0.21957 NaN 1 0 Median NaN NaN NaN 0 0 Median 8068800 3455000 4613900 8068800 3455000 4613900 0 0 0 8835 535 9075 31975 48221 48221 1 NKLDHYAIIK LRRQPKYPRKSAPRRNKLDHYAIIKFPLTT SAPRRNKLDHYAIIKFPLTTESAMKKIEDN R N K I K F 1 0 1 1 0 0 0 0 1 2 1 2 0 0 0 0 0 0 1 0 0 0 10 1 1213.6819 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;Q53RC5 H7BY10 71 80 RPL23A;DKFZp547I014 60S ribosomal protein L23a yes no 2;3 8.2769E-18 179.81 11 3 0.96728 1.1896 27.908 12 Median 1.0344 1.2621 13.939 9 0 Median 0.46283 0.74125 9.3782 3 0 Median 2641000000 1284200000 1356800000 2554400000 1225500000 1328900000 86627000 58670000 27957000 8836 658 9076 31976;31977;31978;31979;31980;31981;31982;31983;31984;31985;31986;31987;31988;31989 48222;48223;48224;48225;48226;48227;48228;48229;48230;48231;48232;48233;48234;48235;48236;48237;48238;48239;48240;48241;48242;48243;48244;48245;48246;48247;48248;48249 48229 28 NKLEDELK SPPALRSRQKNTSNKNKLEDELKDDAQSVE QKNTSNKNKLEDELKDDAQSVETLGKPKAK K N K L K D 0 0 1 1 0 0 2 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 8 1 987.52368 Q8WYP5;B3KRD0 Q8WYP5 2169 2176 AHCTF1 Protein ELYS yes no 2 0.0065316 160.88 1 1 0.72928 1.0195 4.3342 2 Median 0.85963 1.0513 NaN 1 0 Median 0.61869 0.98877 NaN 1 0 Median 61316000 35791000 25525000 19679000 10200000 9479500 41637000 25591000 16046000 8837 1670 9077 31990;31991 48250;48251 48250 2 NKLEDELKDDAQSVETLGK SPPALRSRQKNTSNKNKLEDELKDDAQSVE DELKDDAQSVETLGKPKAKRIRTSKTKQAS K N K G K P 1 0 1 3 0 1 3 1 0 0 3 3 0 0 0 1 1 0 0 1 0 0 19 2 2131.0645 Q8WYP5;B3KRD0 Q8WYP5 2169 2187 AHCTF1 Protein ELYS yes no 3 4.4977E-09 74.618 2 0.76832 0.90327 NaN 1 Median 0.76832 0.90327 NaN 1 0 Median NaN NaN NaN 0 0 Median 45838000 27477000 18361000 45838000 27477000 18361000 0 0 0 8838 1670 9078 31992;31993 48252;48253;48254 48253 3 NKLEDELKDDAQSVETLGKPK SPPALRSRQKNTSNKNKLEDELKDDAQSVE LKDDAQSVETLGKPKAKRIRTSKTKQASKN K N K P K A 1 0 1 3 0 1 3 1 0 0 3 4 0 0 1 1 1 0 0 1 0 0 21 3 2356.2122 Q8WYP5;B3KRD0 Q8WYP5 2169 2189 AHCTF1 Protein ELYS yes no 4 0.020554 21.006 1 0.64206 0.67826 NaN 1 Median 0.64206 0.67826 NaN 1 0 Median NaN NaN NaN 0 0 Median 8108800 5362800 2746000 8108800 5362800 2746000 0 0 0 8839 1670 9079 31994 48255 48255 1 NKLNDLEDALQQAK SDAEQRGENALKDAKNKLNDLEDALQQAKE KNKLNDLEDALQQAKEDLARLLRDYQELMN K N K A K E 2 0 2 2 0 2 1 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 14 1 1598.8264 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 442 455 KRT1 Keratin, type II cytoskeletal 1 no no 2 4.8528E-49 215.77 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7106300 7106300 0 7106300 7106300 0 0 0 0 + 8840 1113;1114 9080 31995;31996 48256;48257 48256 2 NKNPAPPIDAVEQILPTLVR GYLRNLTWTLSNLCRNKNPAPPIDAVEQIL PPIDAVEQILPTLVRLLHHDDPEVLADTCW R N K V R L 2 1 2 1 0 1 1 0 0 2 2 1 0 0 4 0 1 0 0 2 0 0 20 1 2184.2267 Q7Z726;A8K7D9;P52292 Q7Z726 239 258 KPNA2 Importin subunit alpha;Importin subunit alpha-1 yes no 3 0.00077138 55.588 2 0.42329 0.52685 15.13 2 Median 0.42329 0.52685 15.13 2 0 Median NaN NaN NaN 0 0 Median 2774100 1817500 956680 2774100 1817500 956680 0 0 0 8841 633 9081 31997;31998 48258;48259 48259 2 NKPGPYSSVPPPSAPPPK DSSSDEEEEQKKPMKNKPGPYSSVPPPSAP GPYSSVPPPSAPPPKKSLGTQPPKKAVEKQ K N K P K K 1 0 1 0 0 0 0 1 0 0 0 2 0 0 8 3 0 0 1 1 0 0 18 1 1815.9519 B2RAU8;A0A0A0MRM9;Q14978;Q96J17;S4R349 B2RAU8 284 301 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 3 0.0012517 67.902 3 2 0.7064 0.9826 10.111 4 Median 0.86289 1.0674 6.4622 2 0 Median 0.58583 0.91415 4.9671 2 0 Median 32523000 18481000 14042000 16861000 7997200 8863500 15662000 10483000 5178900 8842 388 9082 31999;32000;32001;32002;32003 48260;48261;48262;48263;48264;48265;48266;48267 48261 8 NKPGPYSSVPPPSAPPPKK DSSSDEEEEQKKPMKNKPGPYSSVPPPSAP PYSSVPPPSAPPPKKSLGTQPPKKAVEKQQ K N K K K S 1 0 1 0 0 0 0 1 0 0 0 3 0 0 8 3 0 0 1 1 0 0 19 2 1944.0469 B2RAU8;A0A0A0MRM9;Q14978;Q96J17;S4R349 B2RAU8 284 302 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 3 0.00021136 85.362 3 2 0.77327 0.98588 3.7519 5 Median 0.87918 0.98588 4.8875 3 0 Median 0.57677 0.99471 1.6802 2 0 Median 39261000 20352000 18909000 24466000 11757000 12709000 14795000 8595000 6200000 8843 388 9083 32004;32005;32006;32007;32008 48268;48269;48270;48271;48272;48273;48274 48269 7 NKPHTPFR KSLLALKECIRALGRNKPHTPFRASKLTQV CIRALGRNKPHTPFRASKLTQVLRDSFIGE R N K F R A 0 1 1 0 0 0 0 0 1 0 0 1 0 1 2 0 1 0 0 0 0 0 8 1 995.5301 B0AZS5;O00139;B4DM85 B0AZS5 452 459 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A no no 3 0.016627 69.825 2 0.68342 0.92793 NaN 1 Median 0.68342 0.92793 NaN 1 0 Median NaN NaN NaN 0 0 Median 9480800 7163500 2317300 9480800 7163500 2317300 0 0 0 8844 664;1163 9084 32009;32010 48275;48276 48275 2 NKPIVNIDPQTAELNHLK TLNTLRYADRARKIKNKPIVNIDPQTAELN IVNIDPQTAELNHLKQQVQQLQVLLLQAHG K N K L K Q 1 0 3 1 0 1 1 0 1 2 2 2 0 0 2 0 1 0 0 1 0 0 18 1 2043.1113 Q59HG1;O95239;Q6PKB2 Q59HG1 341 358 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 3 1.9713E-22 157.83 5 2 0.8446 1.0345 3.5788 6 Median 0.87628 1.0697 3.6181 4 0 Median 0.63101 1.0221 0.53536 2 0 Median 641560000 341570000 299990000 388200000 194310000 193890000 253360000 147270000 106100000 8845 1216 9085 32011;32012;32013;32014;32015;32016;32017 48277;48278;48279;48280;48281;48282;48283;48284;48285;48286 48278 10 NKPNMSDPEESRGNDELVK RESTGNMVTGQTVCKNKPNMSDPEESRGND MSDPEESRGNDELVKQEMLVQYLQDAYSFS K N K V K Q 0 1 3 2 0 0 3 1 0 0 1 2 1 0 2 2 0 0 0 1 0 0 19 2 2157.9961 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 598 616 NCAPD2 Condensin complex subunit 1 yes no 3 1.1676E-10 105.89 6 2 0.63564 0.77536 11.552 8 Median 0.6592 0.80597 12.528 6 0 Median 0.41776 0.74815 0.055265 2 0 Median 198210000 129320000 68891000 65262000 36163000 29098000 132950000 93158000 39793000 8846 757 9086;9087 32018;32019;32020;32021;32022;32023;32024;32025 48287;48288;48289;48290;48291;48292;48293;48294;48295;48296;48297;48298 48295 274 12 NKQPVTDPLLTPVEK ARTPLEQEIFNLLHKNKQPVTDPLLTPVEK NKQPVTDPLLTPVEKASLRAMSLEEAKMRR K N K E K A 0 0 1 1 0 1 1 0 0 0 2 2 0 0 3 0 2 0 0 2 0 0 15 1 1677.9301 Q9BVJ6;B4E343;X6RJY0 Q9BVJ6 195 209 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 3 0.0005683 75.998 3 1.1156 1.3794 14.754 3 Median 1.1156 1.3794 14.754 3 0 Median NaN NaN NaN 0 0 Median 27230000 12809000 14421000 27230000 12809000 14421000 0 0 0 8847 1719 9088 32026;32027;32028 48299;48300;48301 48301 3 NKTEYEEAQDAIVK FTNSKLTSLNEEYTKNKTEYEEAQDAIVKE KNKTEYEEAQDAIVKEIVNISSGYVEPMQT K N K V K E 2 0 1 1 0 1 3 0 0 1 0 2 0 0 0 0 1 0 1 1 0 0 14 1 1636.7944 V9H019;Q53GS1;Q53FK0;E9PHA6;P43246;Q53RU4;B4DL39;B4DSB9;B4DN49 V9H019 566 579 MSH2 DNA mismatch repair protein Msh2 yes no 2 0.0012839 103.46 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4790700 4790700 0 4790700 4790700 0 0 0 0 8848 1029 9089 32029;32030 48302;48303 48303 2 NKVETFSESR QQIMESLNVLHSELKNKVETFSESRIFNEL HSELKNKVETFSESRIFNELKTKMLNIKEY K N K S R I 0 1 1 0 0 0 2 0 0 0 0 1 0 1 0 2 1 0 0 1 0 0 10 1 1195.5833 D6RHD3;Q9BS16;D6RC76 D6RHD3 118 127 CENPK Centromere protein K yes no 2 0.01323 103.26 2 0.63809 0.84279 4.9951 2 Median 0.63809 0.84279 4.9951 2 0 Median NaN NaN NaN 0 0 Median 9637600 5634600 4003000 9637600 5634600 4003000 0 0 0 8849 996 9090 32031;32032 48304;48305 48304 2 NKYEDEINK DSELKNMQDMVEDYRNKYEDEINKRTNAEN MVEDYRNKYEDEINKRTNAENEFVTIKKDV R N K N K R 0 0 2 1 0 0 2 0 0 1 0 2 0 0 0 0 0 0 1 0 0 0 9 1 1151.5459 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;CON__P04259;CON__P05787;P05787;Q969I0;F8VUG2;CON__H-INV:HIT000292931;F8VP67;CON__Q9H552;CON__H-INV:HIT000016045;CON__P13647;P13647;B4E1T1;B4DL32;F8W0C6;F8W1U3;H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2;CON__Q5XKE5;Q5XKE5 H6VRG3 268 276 KRT6A;KRT6C;KRT8;KRT5;KRT1;KRT79 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 79 no no 2 1.8893E-38 210.6 1 1 0.18301 0.29356 NaN 1 Median NaN NaN NaN 0 0 Median 0.18301 0.29356 NaN 1 0 Median 84390000 72344000 12045000 4429500 4429500 0 79960000 67915000 12045000 + 8850 1113;1114;459;953;955;961;1068;972 9091 32033;32034 48306;48307;48308 48307 3 NKYEDEINKR DSELKNMQDMVEDYRNKYEDEINKRTNAEN VEDYRNKYEDEINKRTNAENEFVTIKKDVD R N K K R T 0 1 2 1 0 0 2 0 0 1 0 2 0 0 0 0 0 0 1 0 0 0 10 2 1307.647 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;CON__P04259;CON__P05787;P05787;Q969I0;F8VUG2;F8VP67;CON__H-INV:HIT000016045;CON__P13647;P13647;B4E1T1;B4DL32;F8W0C6;F8W1U3;H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 268 277 KRT6A;KRT6C;KRT8;KRT5;KRT1 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 1 no no 2;3 1.9276E-17 182.46 6 0.061701 0.075465 22.051 6 Median 0.061701 0.075465 22.051 6 0 Median NaN NaN NaN 0 0 Median 1081100000 1013100000 67953000 1081100000 1013100000 67953000 0 0 0 + 8851 1113;1114;459;953;955;961;1068 9092 32035;32036;32037;32038;32039;32040 48309;48310;48311;48312;48313;48314;48315;48316;48317;48318;48319;48320 48313 12 NKYEDEINRR EQGLRTMQDVVEDFKNKYEDEINRRTAAEN VEDFKNKYEDEINRRTAAENEFVVLKKDVD K N K R R T 0 2 2 1 0 0 2 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 10 2 1335.6531 CON__P08729 CON__P08729 178 187 yes yes 2 5.5334E-06 149.82 2 0.25653 0.29495 NaN 1 Median 0.25653 0.29495 NaN 1 0 Median NaN NaN NaN 0 0 Median 6762600 5988700 773950 6762600 5988700 773950 0 0 0 + 8852 957 9093 32041;32042 48321;48322 48321 2 NLAHPVIQNFSYETFQQK TQKLRNDLLNIIREKNLAHPVIQNFSYETF HPVIQNFSYETFQQKMLRFLESHLDDAEPY K N L Q K M 1 0 2 0 0 3 1 0 1 1 1 1 0 2 1 1 1 0 1 1 0 0 18 0 2163.0749 Q15554;H3BR06;U3KQ35;H3BTA7;J3KSJ9 Q15554 245 262 TERF2 Telomeric repeat-binding factor 2 yes no 3 0.044434 13.23 1 0.75363 0.95079 NaN 1 Median 0.75363 0.95079 NaN 1 0 Median NaN NaN NaN 0 0 Median 9044400 4836800 4207600 9044400 4836800 4207600 0 0 0 8853 1513 9094 32043 48323 48323 1 NLALCPANHAPLQEAAVIPR PNQWPLVKATIGLIRNLALCPANHAPLQEA PANHAPLQEAAVIPRLVQLLVKAHQDAQRH R N L P R L 5 1 2 0 1 1 1 0 1 1 3 0 0 0 3 0 0 0 0 1 0 0 20 0 2154.1368 A0A0S2Z487;A0A024R1X8;P14923;A0A0S2Z495 A0A0S2Z487 507 526 JUP Junction plakoglobin yes no 3 0.026172 25.186 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5296800 5296800 0 5296800 5296800 0 0 0 0 8854 73 9095 32044;32045 48324;48325 48324 2 NLANTVTEEILEK PDPEVMAKVKVLFVRNLANTVTEEILEKAF VRNLANTVTEEILEKAFSQFGKLERVKKLK R N L E K A 1 0 2 0 0 0 3 0 0 1 2 1 0 0 0 0 2 0 0 1 0 0 13 0 1472.7722 Q05CK9;Q59GL1;B2R8Z8;O60506;B7Z645;B7Z213 Q05CK9 380 392 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 2 3.4377E-20 227.36 3 0.3647 0.46891 8.8578 2 Median 0.3647 0.46891 8.8578 2 0 Median NaN NaN NaN 0 0 Median 24754000 20766000 3988000 24754000 20766000 3988000 0 0 0 8855 718 9096 32046;32047;32048 48326;48327;48328 48327 3 NLATTVTEEILEK PDPEVMAKVKVLFVRNLATTVTEEILEKSF VRNLATTVTEEILEKSFSEFGKLERVKKLK R N L E K S 1 0 1 0 0 0 3 0 0 1 2 1 0 0 0 0 3 0 0 1 0 0 13 0 1459.777 Q0VGD6;Q6MZS5;B2R7W4;O43390;B4DT28;B4DMB1;B4DMD1 Q0VGD6 321 333 HNRPR;DKFZp686A13234;HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 2 0.0058008 118.23 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21993000 21993000 0 21993000 21993000 0 0 0 0 8856 711 9097 32049;32050 48329;48330 48329 2 NLAVLCLGCCGLQNQDFAR SLILPGIISIHPVVRNLAVLCLGCCGLQNQ LCLGCCGLQNQDFARKHFVLLLQVLQIDDV R N L A R K 2 1 2 1 3 2 0 2 0 0 4 0 0 1 0 0 0 0 0 1 0 0 19 0 2208.0238 H0Y9Z8;Q9BPX3;Q6NUR1 Q9BPX3 602 620 NCAPG Condensin complex subunit 3 no no 2 8.8956E-72 220.4 4 1 0.74183 0.98543 10.336 4 Linear 0.74183 0.98543 10.336 4 0 Linear NaN NaN NaN 0 0 Median 81956000 53542000 28414000 69634000 41220000 28414000 12322000 12322000 0 8857 1706;1096 9098 32051;32052;32053;32054;32055 48331;48332;48333;48334;48335;48336;48337;48338;48339;48340 48333 10 NLDCPELISEFMK WKGFSEEHNTWEPEKNLDCPELISEFMKKY EKNLDCPELISEFMKKYKKMKEGENNKPRE K N L M K K 0 0 1 1 1 0 2 0 0 1 2 1 1 1 1 1 0 0 0 0 0 0 13 0 1594.7371 V9HWG0;P45973;Q6I9T7;F8VNY3 V9HWG0 56 68 HEL25;CBX5 Chromobox protein homolog 5 yes no 2 1.6288E-08 142.19 8 2 0.55602 0.69694 22.781 9 Median 0.57147 0.72021 17.498 8 0 Median 0.29064 0.44641 NaN 1 0 Median 85345000 62372000 22973000 49150000 32060000 17090000 36195000 30312000 5882700 8858 1341 9099;9100 32056;32057;32058;32059;32060;32061;32062;32063;32064;32065 48341;48342;48343;48344;48345;48346;48347;48348;48349;48350;48351 48348 565 10 NLDDGIDDER QDRITRYQGVNLYVKNLDDGIDDERLRKEF NLYVKNLDDGIDDERLRKEFSPFGTITSAK K N L E R L 0 1 1 4 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 10 0 1160.4946 A0A087WTT1;A0A024R9C1;P11940;A0A024R9E2;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;H0YAR2;Q2VIP3;Q5VX58;Q3ZCS4;Q9H361;H0YAP2 A0A087WTT1 275 284 PABPC1;PABPC3 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 2 0.04051 68.016 1 0.26941 0.36503 NaN 1 Median 0.26941 0.36503 NaN 1 0 Median NaN NaN NaN 0 0 Median 7490500 5355400 2135100 7490500 5355400 2135100 0 0 0 8859 217 9101 32066 48352 48352 1 NLDDTIDDEK QERISRYQGVNLYIKNLDDTIDDEKLRKEF NLYIKNLDDTIDDEKLRKEFSPFGSITSAK K N L E K L 0 0 1 4 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 10 0 1176.5146 B1ANR0;Q6IQ30;Q13310;H0Y5F5;Q15164;H0YEU6;Q147Y3;Q3B867;Q53GL4;P0CB38 B1ANR0 300 309 PABPC4;PABPC4L Polyadenylate-binding protein;Polyadenylate-binding protein 4;Polyadenylate-binding protein 4-like yes no 2 0.023924 79.148 1 0.20048 0.25377 NaN 1 Median 0.20048 0.25377 NaN 1 0 Median NaN NaN NaN 0 0 Median 9255200 8104900 1150300 9255200 8104900 1150300 0 0 0 8860 676 9102 32067 48353 48353 0 NLDENGLDLLSK TFPKWKPGSLASHVKNLDENGLDLLSKMLI HVKNLDENGLDLLSKMLIYDPAKRISGKMA K N L S K M 0 0 2 2 0 0 1 1 0 0 4 1 0 0 0 1 0 0 0 0 0 0 12 0 1329.6776 A0A024QZP7;P06493;Q5H9N4;A0A024QZJ8 A0A024QZP7 255 266 CDC2;CDK1;DKFZp686L20222 Cyclin-dependent kinase 1 yes no 2 7.4572E-16 152.07 5 1 0.69624 0.86505 15.099 4 Median 0.68036 0.82757 5.3463 3 0 Median 0.75607 1.1352 NaN 1 0 Median 105550000 49294000 56253000 85780000 38615000 47165000 19767000 10679000 9088200 8861 18 9103 32068;32069;32070;32071;32072;32073 48354;48355;48356;48357;48358;48359;48360 48357 7 NLDFQDVLDK CHGAGRALSRAKSRRNLDFQDVLDKLADMG AKSRRNLDFQDVLDKLADMGIAIRVASPKL R N L D K L 0 0 1 3 0 1 0 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 10 0 1205.5928 Q9Y3I0;B4DNA0 Q9Y3I0 442 451 RTCB tRNA-splicing ligase RtcB homolog yes no 2 9.4425E-07 144.65 4 2 0.73443 0.97222 8.5182 6 Median 0.76848 0.96229 9.0875 4 0 Median 0.68417 1.0259 8.6707 2 0 Median 99776000 54946000 44830000 75557000 40704000 34853000 24219000 14241000 9977300 8862 1819 9104 32074;32075;32076;32077;32078;32079 48361;48362;48363;48364;48365;48366 48362 6 NLDIERPTYTNLNR AFMVDNEAIYDICRRNLDIERPTYTNLNRL RNLDIERPTYTNLNRLISQIVSSITASLRF R N L N R L 0 2 3 1 0 0 1 0 0 1 2 0 0 0 1 0 2 0 1 0 0 0 14 1 1717.8747 B3KT06;P68363;B3KPS3;A8JZY9;B4DDU2;F8VVB9;C9JDS9;C9J2C0;Q7Z3M3;Q9NY65;Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;P68366;Q71U36;B4DQK4;Q1ZYQ1;Q13748;Q9UQM3;Q6PEY2;F8VQQ4 B3KT06 181 194 TUBA1B;TUBA4A;TUBA8;DKFZp686L04275;TUBA1C;TUBA1A;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-8 chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 2;3 1.851E-13 155.47 8 2 0.36899 0.4982 107.71 10 Median 0.357 0.483 11.084 8 0 Median 3.79 6.0254 6.0773 2 0 Median 780880000 505460000 275420000 650200000 476300000 173890000 130680000 29152000 101530000 8863 777;1422;1607;1056 9105 32080;32081;32082;32083;32084;32085;32086;32087;32088;32089 48367;48368;48369;48370;48371;48372;48373;48374;48375;48376;48377;48378;48379;48380;48381;48382;48383 48368 17 NLDLDSIIAEVK QISETNVILSMDNNRNLDLDSIIAEVKAQY NNRNLDLDSIIAEVKAQYEDIAQKSKAEAE R N L V K A 1 0 1 2 0 0 1 0 0 2 2 1 0 0 0 1 0 0 0 1 0 0 12 0 1328.7187 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;B4DRY0;CON__P04259;B4DKV4;CON__P13647;P13647;B4E1T1;B4DL32;H0YI76;H0YIN9;H6VRG2;CON__O95678;O95678;CON__P35908;P35908;CON__Q5XKE5;Q5XKE5 H6VRG2 344 355 KRT6A;KRT6C;KRT5;KRT1;KRT75;KRT2;KRT79 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 79 no no 2 5.7692E-11 160.91 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 424490000 424490000 0 125790000 125790000 0 298710000 298710000 0 + 8864 1114;459;953;964;961;946;972 9106 32090;32091;32092;32093;32094 48384;48385;48386;48387;48388 48384 5 NLDNAAEAAEQFK KKAYRKLALKWHPDKNLDNAAEAAEQFKLI DKNLDNAAEAAEQFKLIQAAYDVLSDPQER K N L F K L 4 0 2 1 0 1 2 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 13 0 1419.663 Q5F1R6 Q5F1R6 35 47 DNAJC21 DnaJ homolog subfamily C member 21 yes yes 2 3.6637E-06 123.8 2 0.94736 1.1943 11.286 2 Median 0.94736 1.1943 11.286 2 0 Median NaN NaN NaN 0 0 Median 16391000 8812900 7578500 16391000 8812900 7578500 0 0 0 8865 1556 9107 32095;32096 48389;48390 48389 1 NLDNAVLIGETGSGK LPIFQARGQLLAQLRNLDNAVLIGETGSGK NLDNAVLIGETGSGKTTQIPQYLYEGGISR R N L G K T 1 0 2 1 0 0 1 3 0 1 2 1 0 0 0 1 1 0 0 1 0 0 15 0 1486.7627 B4DIS6;Q9H6R0 B4DIS6 148 162 DHX33 Putative ATP-dependent RNA helicase DHX33 yes no 2 1.4184E-10 133.04 3 2 0.95583 1.2059 25.508 5 Median 0.93582 1.204 17.759 3 0 Median 1.0944 1.6309 1.2565 2 0 Median 34260000 17755000 16505000 19312000 11484000 7827900 14948000 6270700 8677300 8866 811 9108 32097;32098;32099;32100;32101 48391;48392;48393;48394;48395;48396;48397 48393 5 NLEASAVIQGLVK FCTSHSDNKIIIIHRNLEASAVIQGLVKDR HRNLEASAVIQGLVKDRSIFTGLMIDPRTK R N L V K D 2 0 1 0 0 1 1 1 0 1 2 1 0 0 0 1 0 0 0 2 0 0 13 0 1340.7664 A8K330;Q8IWA0 A8K330 320 332 WDR75 WD repeat-containing protein 75 yes no 2 1.2565E-29 166.86 4 2 0.74407 1.0038 12.961 6 Median 0.85283 1.054 15.977 4 0 Median 0.6504 0.98163 3.3809 2 0 Median 155150000 82217000 72935000 123230000 63068000 60159000 31925000 19149000 12776000 8867 588 9109 32102;32103;32104;32105;32106;32107 48398;48399;48400;48401;48402;48403;48404;48405;48406 48401 9 NLEAYAANPHSFVFTR RSRHQKRARAQAQLRNLEAYAANPHSFVFT LEAYAANPHSFVFTRGCTGRNIRQLSLDVR R N L T R G 3 1 2 0 0 0 1 0 1 0 1 0 0 2 1 1 1 0 1 1 0 0 16 0 1835.8955 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55 A0A0A6YYI3 21 36 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2;3 8.4428E-54 190.41 7 4 0.69592 0.94637 8.6247 11 Median 0.7502 0.99242 6.6867 7 0 Median 0.55948 0.87537 4.5194 4 0 Median 303720000 178610000 125110000 186590000 103840000 82747000 117130000 74765000 42360000 8868 408 9110 32108;32109;32110;32111;32112;32113;32114;32115;32116;32117;32118 48407;48408;48409;48410;48411;48412;48413;48414;48415;48416;48417;48418;48419;48420;48421;48422;48423;48424;48425;48426;48427;48428;48429 48417 23 NLEDDTLSECK SDSNLGGHSIRCKSKNLEDDTLSECKQVSD CKSKNLEDDTLSECKQVSDKAVSLQRKLRK K N L C K Q 0 0 1 2 1 0 2 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 11 0 1322.566 Q14966;D6W5H1;A8K583;A0A096LPH6;B4DF54;B4E187;A0A096LPI0 Q14966 643 653 ZNF638 Zinc finger protein 638 yes no 2 0.0024091 98.048 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1567200 1567200 0 1567200 1567200 0 0 0 0 8869 1498 9111 32119;32120 48430;48431 48430 2 NLEEAELHSTEK KTHLEDERDNSEKKKNLEEAELHSTEKVPC KKKNLEEAELHSTEKVPCIEFDDDDYDTDF K N L E K V 1 0 1 0 0 0 4 0 1 0 2 1 0 0 0 1 1 0 0 0 0 0 12 0 1398.6627 H0YNU5;B2RAN0;P54132;Q3B7X0;H0YLV8 H0YNU5 274 285 BLM Bloom syndrome protein yes no 2 0.001803 64.82 1 2 0.57546 0.80215 NaN 1 Median NaN NaN NaN 0 0 Median 0.57546 0.80215 NaN 1 0 Median 15623000 11435000 4187900 8034800 5299700 2735000 7588000 6135100 1452900 8870 725 9112 32121;32122;32123 48432;48433;48434 48433 3 NLEGYVGFANLPNQVYR AEERSVNSSTMAQQKNLEGYVGFANLPNQV EGYVGFANLPNQVYRKSVKRGFEFTLMVVG K N L Y R K 1 1 3 0 0 1 1 2 0 0 2 0 0 1 1 0 0 0 2 2 0 0 17 0 1952.9745 Q3B7A3;Q59EY4;B4DUD6;Q8TC62;E7ES33;Q3LIE9;A4GYY8;A8K3D0;E7EPK1;Q16181;A0A0U1RQK0;A0A0U1RRD1 Q3B7A3 25 41 SEPT7;Nbla02942;DKFZp686F17268 Septin-7 yes no 2 9.9935E-05 77.64 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2350600 2350600 0 2350600 2350600 0 0 0 0 8871 555 9113 32124 48435 48435 1 NLELPR LSSSTFDSEKNESRRNLELPRLSETSIKDR DSEKNESRRNLELPRLSETSIKDRMAKYQA R N L P R L 0 1 1 0 0 0 1 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 6 0 740.41809 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VRN8 F8VQE1 96 101 LIMA1 LIM domain and actin-binding protein 1 yes no 2 0.035553 111.69 3 0.76639 1.0597 11.839 3 Plateau 0.76639 1.0597 11.839 3 0 Plateau NaN NaN NaN 0 0 Median 243840000 143280000 100560000 243840000 143280000 100560000 0 0 0 8872 834 9114 32125;32126;32127 48436;48437;48438 48437 3 NLEPALPGR RGASSGKKTAGPQQKNLEPALPGRWGGRSA AGPQQKNLEPALPGRWGGRSAENPPSGSVR K N L G R W 1 1 1 0 0 0 1 1 0 0 2 0 0 0 2 0 0 0 0 0 0 0 9 0 965.52943 B4DXQ8;B3KWX6;Q53EY5;B3KX14;Q15014;Q5JXX6;Q5JXX1;Q5JXX2 B4DXQ8 22 30 MORF4L2 Mortality factor 4-like protein 2 yes no 2 0.027536 47.082 2 0.51306 0.71802 NaN 1 Median NaN NaN NaN 0 0 Median 0.51306 0.71802 NaN 1 0 Median 9562700 7982000 1580700 0 0 0 9562700 7982000 1580700 8873 785 9115 32128;32129 48439;48440 48440 2 NLETSSAFQSSSQK LTPSQELDDLIDSQKNLETSSAFQSSSQKL KNLETSSAFQSSSQKLTSQKEQKNLESSTG K N L Q K L 1 0 1 0 0 2 1 0 0 0 1 1 0 1 0 5 1 0 0 0 0 0 14 0 1512.7056 Q9Y2X9;B3KMX4;B4DM04 Q9Y2X9 774 787 ZNF281 Zinc finger protein 281 yes no 2 0.0056673 41.48 1 0.82157 1.0931 NaN 1 Median NaN NaN NaN 0 0 Median 0.82157 1.0931 NaN 1 0 Median 2658900 1280500 1378400 0 0 0 2658900 1280500 1378400 8874 1811 9116 32130 48441;48442 48441 2 NLEVGIR APKKARVVQQQKLKKNLEVGIRKKIEHDVV VQQQKLKKNLEVGIRKKIEHDVVMKASSSL K N L I R K 0 1 1 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 1 0 0 7 0 799.4552 Q9UNZ5 Q9UNZ5 52 58 C19orf53 Leydig cell tumor 10 kDa protein homolog yes yes 2 0.017224 97.068 3 1 1.33 1.7776 17.633 3 Plateau 1.279 1.7139 5.1611 2 0 Median 0.89088 1.2712 NaN 1 0 Median 62827000 28091000 34736000 53247000 23603000 29643000 9580600 4487800 5092800 8875 1798 9117 32131;32132;32133;32134 48443;48444;48445;48446;48447 48446 5 NLEVGIRK APKKARVVQQQKLKKNLEVGIRKKIEHDVV QQQKLKKNLEVGIRKKIEHDVVMKASSSLP K N L R K K 0 1 1 0 0 0 1 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 1 927.55016 Q9UNZ5 Q9UNZ5 52 59 C19orf53 Leydig cell tumor 10 kDa protein homolog yes yes 2 0.020039 83.753 3 2 1.3587 1.7681 10.345 5 Median 1.3913 1.8487 8.8345 3 0 Median 1.0282 1.6349 1.4479 2 0 Median 147420000 60625000 86800000 119250000 45683000 73563000 28179000 14942000 13237000 8876 1798 9118 32135;32136;32137;32138;32139 48448;48449;48450;48451;48452;48453 48449 5 NLFEDQNTLTSICEK AIQFLASVCERPHYKNLFEDQNTLTSICEK NLFEDQNTLTSICEKVIVVHTYAAHALERL K N L E K V 0 0 2 1 1 1 2 0 0 1 2 1 0 1 0 1 2 0 0 0 0 0 15 0 1810.8407 B4DS32;B4DPS6;B4DUC5;P55060;B4DM67 B4DS32 98 112 CSE1L Exportin-2 yes no 2 0.009389 48.004 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8877 846 9119 32140 48454 48454 1 NLFEQLVR ______________________________ TMMLNVRNLFEQLVRRVEILSEGNEVQFIQ R N L V R R 0 1 1 0 0 1 1 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 8 0 1017.5607 B2RE34;A0A024R136;Q9H0H5;F8VRD2;F8VWY4;F8VVE5;F8VWX0;F8W0L1;F8VZ66;F8VV47;F8VUW9;F8VV39;F8VS54;Q9BZ74;F8VVY0;F8VXH1 B2RE34 10 17 RACGAP1;FKSG42 Rac GTPase-activating protein 1 yes no 2 0.0085622 101.64 4 1 0.88966 1.2186 13.138 4 Median 0.88999 1.2151 1.9682 3 0 Plateau 1.0966 1.564 NaN 1 0 Median 38338000 19972000 18366000 28311000 14725000 13587000 10026000 5246700 4779700 8878 49 9120 32141;32142;32143;32144;32145 48455;48456;48457;48458;48459;48460 48458 6 NLFILAYNYK KNVMNKVSEMSSFQRNLFILAYNYKMEQIS SSFQRNLFILAYNYKMEQISKGRNTPLCDS R N L Y K M 1 0 2 0 0 0 0 0 0 1 2 1 0 1 0 0 0 0 2 0 0 0 10 0 1257.6758 B3KN05;B2RBE0;A0A024R497;O95573;B3KMA6 B3KN05 396 405 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes no 2 0.0058718 81.548 2 0.61411 0.7739 NaN 1 Median 0.61411 0.7739 NaN 1 0 Median NaN NaN NaN 0 0 Median 5528200 1896300 3631900 5528200 1896300 3631900 0 0 0 8879 118 9121 32146;32147 48461;48462 48462 2 NLGFGMGIEFR VVKKQKPELLNKITKNLGFGMGIEFREGSL KITKNLGFGMGIEFREGSLVINSKNQYKLK K N L F R E 0 1 1 0 0 0 1 3 0 1 1 0 1 2 0 0 0 0 0 0 0 0 11 0 1239.607 Q9Y5B9;Q0VGA3 Q9Y5B9 347 357 SUPT16H FACT complex subunit SPT16 yes no 2 0.00023901 99.815 3 3 0.68026 1.0269 10.259 6 Median 0.68141 0.91453 11.383 3 0 Median 0.65485 1.0788 8.2849 3 0 Median 181220000 105650000 75565000 23359000 13495000 9863600 157860000 92156000 65701000 8880 1829 9122;9123 32148;32149;32150;32151;32152;32153 48463;48464;48465;48466;48467;48468;48469;48470;48471;48472;48473 48467 859 11 NLGFSPGDREENIRR CYSLDGDNVRHGLNRNLGFSPGDREENIRR NLGFSPGDREENIRRIAEVAKLFADAGLVC R N L R R I 0 3 2 1 0 0 2 2 0 1 1 0 0 1 1 1 0 0 0 0 0 0 15 2 1758.8761 Q5TB52;B4DWB5;O95340 Q5TB52 88 102 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes no 3 0.05196 46.318 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5658300 5658300 0 5658300 5658300 0 0 0 0 8881 865 9124 32154 48474 48474 1 NLGIPIITVLGDSK QLAVAMGPNIKQHVKNLGIPIITVLGDSKN KNLGIPIITVLGDSKNNVRAAALATVNAWA K N L S K N 0 0 1 1 0 0 0 2 0 3 2 1 0 0 1 1 1 0 0 1 0 0 14 0 1438.8395 Q14008 Q14008 941 954 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 3.4859E-05 97.911 3 0.98688 1.2759 13.323 3 Median 0.98688 1.2759 13.323 3 0 Median NaN NaN NaN 0 0 Median 12396000 6013800 6382000 12396000 6013800 6382000 0 0 0 8882 1481 9125 32155;32156;32157 48475;48476;48477;48478;48479 48479 5 NLGSINTELQDVQR IQKTKKLYIDSCARRNLGSINTELQDVQRI RNLGSINTELQDVQRIMVANIEEVLQRGEA R N L Q R I 0 1 2 1 0 2 1 1 0 1 2 0 0 0 0 1 1 0 0 1 0 0 14 0 1585.806 O75396;A0A087X1A9 O75396 134 147 SEC22B Vesicle-trafficking protein SEC22b yes no 2 3.4084E-40 206.97 3 1 0.49616 0.68072 9.2023 3 Median 0.49616 0.68072 9.2023 3 0 Median NaN NaN NaN 0 0 Median 32728000 15239000 17489000 23291000 15239000 8051600 9437000 0 9437000 8883 1200 9126 32158;32159;32160;32161 48480;48481;48482;48483;48484;48485 48481 6 NLGVVVAPHTLK KWELNPEIVARHFFKNLGVVVAPHTLKLPE FFKNLGVVVAPHTLKLPEEPITRWGEYWCE K N L L K L 1 0 1 0 0 0 0 1 1 0 2 1 0 0 1 0 1 0 0 3 0 0 12 0 1246.7398 Q9BYD2 Q9BYD2 196 207 MRPL9 39S ribosomal protein L9, mitochondrial yes yes 2 1.8932E-06 95.573 2 0.44148 0.56097 NaN 1 Median 0.44148 0.56097 NaN 1 0 Median NaN NaN NaN 0 0 Median 8655900 6429200 2226700 8655900 6429200 2226700 0 0 0 8884 1725 9127 32162;32163 48486;48487 48487 2 NLHCSSELPQNDVLLSK ALSSATSSTPVSEARNLHCSSELPQNDVLL HCSSELPQNDVLLSKENSLRGTSDHEYHRG R N L S K E 0 0 2 1 1 1 1 0 1 0 4 1 0 0 1 3 0 0 0 1 0 0 17 0 1952.9626 Q5VWN6 Q5VWN6 556 572 FAM208B Protein FAM208B yes yes 3 0.0020613 30.536 1 0.64763 0.81798 NaN 1 Median 0.64763 0.81798 NaN 1 0 Median NaN NaN NaN 0 0 Median 8414500 5196100 3218400 8414500 5196100 3218400 0 0 0 8885 1579 9128 32164 48488 48488 1 NLIAPIFLHR AFEKPTQIYRFLRTRNLIAPIFLHRTLTYM FLRTRNLIAPIFLHRTLTYMSHRNSRTNIK R N L H R T 1 1 1 0 0 0 0 0 1 2 2 0 0 1 1 0 0 0 0 0 0 0 10 0 1192.7081 J3QQW9;Q15022;A8K1U9 J3QQW9 104 113 SUZ12 Polycomb protein SUZ12 yes no 2;3 4.322E-06 148.04 7 1 0.82749 1.1378 14.111 6 Median 0.84449 1.1323 15.702 5 0 Median 0.76092 1.1434 NaN 1 0 Median 80208000 43235000 36973000 64349000 34588000 29761000 15859000 8646600 7212200 8886 1143 9129 32165;32166;32167;32168;32169;32170;32171;32172 48489;48490;48491;48492;48493;48494;48495;48496;48497;48498;48499 48493 11 NLIDAGVDALR LQVIGGNVVTAAQAKNLIDAGVDALRVGMG AQAKNLIDAGVDALRVGMGSGSICITQEVL K N L L R V 2 1 1 2 0 0 0 1 0 1 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1155.6248 P12268;H0Y4R1;B7Z1G4;Q6RUP8 P12268 312 322 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2 5.8377E-07 120.09 3 2 0.39484 0.55039 139.17 5 Median 0.38575 0.53417 14.444 3 0 Plateau 3.8686 6.1099 3.6384 2 0 Median 233220000 134270000 98954000 165720000 122220000 43503000 67501000 12050000 55450000 8887 1261 9130 32173;32174;32175;32176;32177 48500;48501;48502;48503;48504;48505;48506;48507;48508 48504 9 NLIIEAVTNLR GQDKPHETYRLLKRRNLIIEAVTNLRLIES LKRRNLIIEAVTNLRLIESLFTIQKMIMDQ R N L L R L 1 1 2 0 0 0 1 0 0 2 2 0 0 0 0 0 1 0 0 1 0 0 11 0 1254.7296 Q6AHZ7;Q12789;Q6AWA4;H3BU37 Q6AHZ7 619 629 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 1.7331E-05 98.249 3 0.52408 0.70993 17.945 3 Median 0.52408 0.70993 17.945 3 0 Median NaN NaN NaN 0 0 Median 17436000 11183000 6252500 17436000 11183000 6252500 0 0 0 8888 1457 9131 32178;32179;32180 48509;48510;48511 48511 3 NLIQTLVSGIAPATR PSSQQEAQNRMSQMRNLIQTLVSGIAPATR NLIQTLVSGIAPATRSRATPQALLLDALCL R N L T R S 2 1 1 0 0 1 0 1 0 2 2 0 0 0 1 1 2 0 0 1 0 0 15 0 1552.8937 E7EXA6;Q96S08;A0A0D9SF58;Q8WVB6 E7EXA6 735 749 CHTF18;RUVBL Chromosome transmission fidelity protein 18 homolog yes no 2 1.4791E-13 153.63 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 832930 832930 0 832930 832930 0 0 0 0 8889 433 9132 32181;32182 48512;48513 48512 2 NLLCPFCLK SDVEAHFRAAHENTKNLLCPFCLKVSKMAT AHENTKNLLCPFCLKVSKMATPYMNHYMKH K N L L K V 0 0 1 0 2 0 0 0 0 0 3 1 0 1 1 0 0 0 0 0 0 0 9 0 1163.5831 A8K124;B4DHL1;A0A024R5W1;Q6N043;H0YLA6;H0YL38;B3KUN2;A0A0D9SEJ8;Q86YH2;Q8ND82 Q8ND82 441 449 SUHW4;ZNF280D;ZNF280B;ZNF280C Zinc finger protein 280D;Zinc finger protein 280B;Zinc finger protein 280C no no 2 0.014051 57.281 1 0.69096 0.87722 NaN 1 Median 0.69096 0.87722 NaN 1 0 Median NaN NaN NaN 0 0 Median 6814500 3720700 3093800 6814500 3720700 3093800 0 0 0 8890 1652;151 9133 32183 48514;48515 48514 2 NLLDEELQR LTTLRLQLEETDHQKNLLDEELQRLKAEAT ETDHQKNLLDEELQRLKAEATEAARQRSQV K N L Q R L 0 1 1 1 0 1 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1128.5775 Q15149 Q15149 2340 2348 PLEC Plectin yes yes 2 0.01357 86.67 3 0.77957 1.0708 NaN 1 Median 0.77957 1.0708 NaN 1 0 Median NaN NaN NaN 0 0 Median 16055000 3287900 12768000 16055000 3287900 12768000 0 0 0 8891 1507 9134 32184;32185;32186 48516;48517;48518 48516 3 NLLDTYNTELLK LESSRRVHTSTPSDKNLLDTYNTELLKSDS SDKNLLDTYNTELLKSDSDNNNSDDCGNIL K N L L K S 0 0 2 1 0 0 1 0 0 0 4 1 0 0 0 0 2 0 1 0 0 0 12 0 1435.7559 Q03164 Q03164 2819 2830 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 0.0012365 85.355 2 2 0.88674 1.1864 8.3411 3 Median 0.94176 1.211 11.677 2 0 Median 0.85649 1.1864 NaN 1 0 Median 14032000 5775000 8257400 6106900 2856500 3250400 7925500 2918500 5007000 8892 1438 9135 32187;32188;32189;32190 48519;48520;48521;48522;48523;48524 48524 6 NLLELEVQK KELEQLKTEEEELQRNLLELEVQKEQTLAQ EEELQRNLLELEVQKEQTLAQIDFMQKQRN R N L Q K E 0 0 1 0 0 1 2 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 9 0 1084.6128 Q8NG31;H0YCZ2 Q8NG31 2098 2106 CASC5 Protein CASC5 yes no 2 0.0062406 69.423 2 0.45752 0.58747 NaN 1 Median 0.45752 0.58747 NaN 1 0 Median NaN NaN NaN 0 0 Median 6505100 5100200 1404900 6505100 5100200 1404900 0 0 0 8893 1656 9136 32191;32192 48525;48526 48525 2 NLLESYHVPELIK KMNVKIPENIYRGIRNLLESYHVPELIKDA IRNLLESYHVPELIKDAHLLVESKNLDFQK R N L I K D 0 0 1 0 0 0 2 0 1 1 3 1 0 0 1 1 0 0 1 1 0 0 13 0 1553.8453 E5KNY5;P42704;B4DSR0 E5KNY5 628 640 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2;3 5.4956E-08 112.02 6 3 0.37606 0.48342 13.352 4 Median 0.37606 0.48342 13.352 4 0 Median NaN NaN NaN 0 0 Median 44546000 24288000 20258000 30329000 24288000 6041200 14217000 0 14217000 8894 1001 9137 32193;32194;32195;32196;32197;32198;32199;32200;32201 48527;48528;48529;48530;48531;48532;48533;48534;48535 48530 9 NLLFQDCEK DVDPEKLEMESKLHRNLLFQDCEKEQDNKT ESKLHRNLLFQDCEKEQDNKTKDPTHDVKT R N L E K E 0 0 1 1 1 1 1 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1165.5438 B2RMQ4;Q8WWK9 B2RMQ4 555 563 CKAP2 Cytoskeleton-associated protein 2 yes no 2 0.010103 63.419 2 1.0241 1.2719 9.0962 2 Median 1.0241 1.2719 9.0962 2 0 Median NaN NaN NaN 0 0 Median 32655000 17637000 15018000 32655000 17637000 15018000 0 0 0 8895 745 9138 32202;32203 48536;48537 48537 2 NLLHSLQSSGIGSK AIQQLAEAQPEATAKNLLHSLQSSGIGSKA KNLLHSLQSSGIGSKAGVPSKSSGSAALLA K N L S K A 0 0 1 0 0 1 0 2 1 1 3 1 0 0 0 4 0 0 0 0 0 0 14 0 1439.7732 E1NZA1;Q92616;B4DM32 E1NZA1 88 101 PRIC295;GCN1L1 Translational activator GCN1 yes no 3 0.028017 21.886 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3961400 3961400 0 3961400 3961400 0 0 0 0 8896 1000 9139 32204 48538 48538 1 NLLIFENLIDLKR LKFYQGFLFSEKPEKNLLIFENLIDLKRRY EKNLLIFENLIDLKRRYNFPVEVEVPMERK K N L K R R 0 1 2 1 0 0 1 0 0 2 4 1 0 1 0 0 0 0 0 0 0 0 13 1 1599.9348 P78527 P78527 1974 1986 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.0065511 31.881 1 0.42242 0.51518 NaN 1 Median 0.42242 0.51518 NaN 1 0 Median NaN NaN NaN 0 0 Median 1484300 1074800 409440 1484300 1074800 409440 0 0 0 8897 1427 9140 32205 48539 48539 1 NLLNLDVIK EQLVTLSLLPESRWKNLLNLDVIKKKNKPK PESRWKNLLNLDVIKKKNKPKEPPKVPKSA K N L I K K 0 0 2 1 0 0 0 0 0 1 3 1 0 0 0 0 0 0 0 1 0 0 9 0 1040.623 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 708 716 WDR36 WD repeat-containing protein 36 yes no 2 0.00060667 118.74 4 2 0.84261 1.1354 20.972 5 Median 0.8925 1.1354 27.295 3 0 Median 0.68672 1.098 6.0372 2 0 Median 212130000 135680000 76451000 118290000 81082000 37205000 93841000 54595000 39246000 8898 404 9141 32206;32207;32208;32209;32210;32211 48540;48541;48542;48543;48544;48545;48546;48547;48548 48542 9 NLLNLDVIKK EQLVTLSLLPESRWKNLLNLDVIKKKNKPK ESRWKNLLNLDVIKKKNKPKEPPKVPKSAP K N L K K K 0 0 2 1 0 0 0 0 0 1 3 2 0 0 0 0 0 0 0 1 0 0 10 1 1168.718 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 708 717 WDR36 WD repeat-containing protein 36 yes no 2 0.0088845 83.647 2 1 0.83328 1.0321 15.277 2 Median 0.83328 1.0321 15.277 2 0 Median NaN NaN NaN 0 0 Median 17045000 11744000 5301700 11023000 5721500 5301700 6022300 6022300 0 8899 404 9142 32212;32213;32214 48549;48550;48551 48550 3 NLLNSVIGR SRASRDLLKEFPQPKNLLNSVIGRALGISH EFPQPKNLLNSVIGRALGISHAKDKLVYVH K N L G R A 0 1 2 0 0 0 0 1 0 1 2 0 0 0 0 1 0 0 0 1 0 0 9 0 984.57163 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 27 35 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.0002702 75.854 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8900 93 9143 32215 48552 48552 1 NLLPAYRPNLSPPAEAGLALPPTGYR QSSLVEAFNKILNSKNLLPAYRPNLSPPAE PPAEAGLALPPTGYRCLECGDAFSLEKSLA K N L Y R C 4 2 2 0 0 0 1 2 0 0 5 0 0 0 6 1 1 0 2 0 0 0 26 1 2747.4759 Q8N1G0;H0Y5I5;F8WCX2 Q8N1G0 509 534 ZNF687 Zinc finger protein 687 yes no 3 0.019881 47.38 2 0.66029 0.83651 NaN 1 Median 0.66029 0.83651 NaN 1 0 Median NaN NaN NaN 0 0 Median 8639700 5189000 3450700 8639700 5189000 3450700 0 0 0 8901 1634 9144 32216;32217 48553;48554 48554 2 NLLQELK NAAEESLPEIQKEHRNLLQELKVIQENEHA PEIQKEHRNLLQELKVIQENEHALQKDALS R N L L K V 0 0 1 0 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 856.50182 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 992 998 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.0086595 119.56 4 2 0.71063 0.93874 4.9502 6 Median 0.72054 0.93256 1.6318 4 0 Median 0.62868 1.001 6.1777 2 0 Median 470130000 280780000 189350000 318770000 188600000 130170000 151360000 92180000 59178000 8902 1760 9145 32218;32219;32220;32221;32222;32223 48555;48556;48557;48558;48559;48560;48561;48562;48563 48555 9 NLLSCVYSCPSYIAK EKKLKSHQKLSETLKNLLSCVYSCPSYIAK NLLSCVYSCPSYIAKDLMKVLQGVNGEMVL K N L A K D 1 0 1 0 2 0 0 0 0 1 2 1 0 0 1 3 0 0 2 1 0 0 15 0 1773.843 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1 B2RWN5 1002 1016 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 1.9521E-27 169.09 4 0.8836 1.0789 4.0586 3 Median 0.8836 1.0789 4.0586 3 0 Median NaN NaN NaN 0 0 Median 40953000 22580000 18374000 40953000 22580000 18374000 0 0 0 8903 748 9146 32224;32225;32226;32227 48564;48565;48566;48567;48568;48569;48570;48571;48572 48566 9 NLLSDCSVVSTSLEDK MFESTAADLGSVVRKNLLSDCSVVSTSLED LLSDCSVVSTSLEDKQQVPSEDSMEKVKVY K N L D K Q 0 0 1 2 1 0 1 0 0 0 3 1 0 0 0 4 1 0 0 2 0 0 16 0 1765.8404 O95235;D6RBN1;D6R9E4 O95235 38 53 KIF20A Kinesin-like protein KIF20A;Kinesin-like protein yes no 2 1.0791E-33 187.62 5 2 0.81379 1.0394 28.811 5 Median 0.83371 1.0467 17.808 4 0 Median 0.41712 0.64481 NaN 1 0 Median 148260000 99128000 49130000 80278000 39889000 40389000 67980000 59239000 8741300 8904 1215 9147 32228;32229;32230;32231;32232;32233;32234 48573;48574;48575;48576;48577;48578;48579;48580;48581;48582 48575 10 NLLSVAYK KSVTEQGAELSNEERNLLSVAYKNVVGARR ELSNEERNLLSVAYKNVVGARRSSWRVVSS R N L Y K N 1 0 1 0 0 0 0 0 0 0 2 1 0 0 0 1 0 0 1 1 0 0 8 0 906.51747 D0PNI1;P63104;E7EX29;E7ESK7;E5RGE1;Q6LD62;E5RIR4;E9PD24;E7EVZ2;B2R6N6;A0A024R1K7;Q04917;Q3YBA8;B4DJF2;I3L3T1;A2IDB2;V9HW98;G9K389;G9K388;P62258;K7EIT4;B4DE78;B4DHC4;B3KNB4;P61981;P27348;E9PG15;Q53RR5;V9HWD6;P31946;B5BU24;Q4VY20;A0A0J9YWZ2;Q4VY19;A0A0J9YWE8;Q59EQ2;P31947 D0PNI1 42 49 YWHAZ;14-3-3 protein;YWHAH;YWHAE;HEL2;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion;YWHAG;YWHAQ;HEL-S-1;YWHAB;SFN 14-3-3 protein zeta/delta;14-3-3 protein eta;14-3-3 protein epsilon;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein sigma no no 1 7.9654E-07 152.63 1 0.51127 0.65377 NaN 1 Median 0.51127 0.65377 NaN 1 0 Median NaN NaN NaN 0 0 Median 6139000 3584700 2554400 6139000 3584700 2554400 0 0 0 8905 974;1085;1300;758;1311;1312 9148 32235 48583 48583 1 NLLTAAADAIER EELVSERTEAFTIARNLLTAAADAIERIMS IARNLLTAAADAIERIMSSYKEVTELAGYT R N L E R I 4 1 1 1 0 0 1 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 12 0 1256.6725 P33897;Q6TGM1;Q6TGM0 P33897 390 401 ABCD1;ALD ATP-binding cassette sub-family D member 1 yes no 2 0.030209 47.559 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 8906 1315 9149 32236 48584 48584 1 NLLTVTSSDEMMK RVVQMLGSLGGQINKNLLTVTSSDEMMKSY NKNLLTVTSSDEMMKSYVAWDREKRLSFAV K N L M K S 0 0 1 1 0 0 1 0 0 0 2 1 2 0 0 2 2 0 0 1 0 0 13 0 1467.6949 P78527;B4DL41 P78527 869 881 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.006502 40.727 1 0.50754 0.77151 NaN 1 Median NaN NaN NaN 0 0 Median 0.50754 0.77151 NaN 1 0 Median 12327000 8325000 4002300 0 0 0 12327000 8325000 4002300 8907 1427 9150 32237 48585;48586 48585 633;634 2 NLLVTSGK GHKDAITQALFLREKNLLVTSGKDTMVKWW ALFLREKNLLVTSGKDTMVKWWDLDTQHCF K N L G K D 0 0 1 0 0 0 0 1 0 0 2 1 0 0 0 1 1 0 0 1 0 0 8 0 830.48617 Q5TDG3;Q9UNX4 Q5TDG3 162 169 WDR3 WD repeat-containing protein 3 yes no 2 0.0067634 82.241 3 1 0.86553 1.0809 3.1401 3 Median 0.86553 1.0809 3.1401 3 0 Median NaN NaN NaN 0 0 Median 91025000 48966000 42059000 86593000 44533000 42059000 4432100 4432100 0 8908 1576 9151 32238;32239;32240;32241 48587;48588;48589;48590;48591;48592 48589 6 NLLYIYPQSLNFANR EFPARDVYVPNTTYRNLLYIYPQSLNFANR NLLYIYPQSLNFANRQGSARNITVKVQFMY R N L N R Q 1 1 3 0 0 1 0 0 0 1 3 0 0 1 1 1 0 0 2 0 0 0 15 0 1824.9523 Q96N67;A0A1B0GUE9;A0A0U1RQG7 Q96N67 562 576 DOCK7 Dedicator of cytokinesis protein 7 yes no 2 2.6081E-05 74.326 4 0.8358 1.1586 14.431 2 Median 0.8358 1.1586 14.431 2 0 Median NaN NaN NaN 0 0 Median 11129000 8870600 2258600 11129000 8870600 2258600 0 0 0 8909 1696 9152 32242;32243;32244;32245 48593;48594;48595;48596 48595 4 NLNYLHLDYNFNLK CRQGYNMLNLLIHRKNLNYLHLDYNFNLKP KNLNYLHLDYNFNLKPVKTLTTKERKKSRF K N L L K P 0 0 4 1 0 0 0 0 1 0 4 1 0 1 0 0 0 0 2 0 0 0 14 0 1779.8944 Q6P2Q9;I3L0J9 Q6P2Q9 512 525 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 0.013588 67.019 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10421000 10421000 0 10421000 10421000 0 0 0 0 8910 1592 9153 32246;32247 48597;48598 48598 2 NLNYLHLDYNFNLKPVK CRQGYNMLNLLIHRKNLNYLHLDYNFNLKP NYLHLDYNFNLKPVKTLTTKERKKSRFGNA K N L V K T 0 0 4 1 0 0 0 0 1 0 4 2 0 1 1 0 0 0 2 1 0 0 17 1 2104.1106 Q6P2Q9;I3L0J9 Q6P2Q9 512 528 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 0.0077957 28.212 2 0.67272 0.83367 14.14 2 Median 0.67272 0.83367 14.14 2 0 Median NaN NaN NaN 0 0 Median 16210000 9637200 6572600 16210000 9637200 6572600 0 0 0 8911 1592 9154 32248;32249 48599;48600 48600 2 NLPAGTLAAELQETFGHFGSLGR SQAAAERSKTVILVKNLPAGTLAAELQETF AELQETFGHFGSLGRVLLPEGGITAIVEFL K N L G R V 3 1 1 0 0 1 2 4 1 0 4 0 0 2 1 1 2 0 0 0 0 0 23 0 2385.2077 A0A024RBL4 A0A024RBL4 410 432 RBM19 yes yes 3 1.3184E-05 69.72 3 0.74179 1.0319 12.456 2 Median 0.74179 1.0319 12.456 2 0 Median NaN NaN NaN 0 0 Median 6905700 4643700 2262000 6905700 4643700 2262000 0 0 0 8912 278 9155 32250;32251;32252 48601;48602;48603;48604 48603 4 NLPGLVQEGEPFSEEATLFTK ITFLLAGIECPRGARNLPGLVQEGEPFSEE QEGEPFSEEATLFTKELVLQREVEVEVESM R N L T K E 1 0 1 0 0 1 4 2 0 0 3 1 0 2 2 1 2 0 0 1 0 0 21 0 2305.1478 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B4E299;B3KU67;I6TRR8;H7C597 A0A140VK49 566 586 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 3.4487E-37 147.75 4 0.46335 0.58883 7.1945 4 Median 0.46335 0.58883 7.1945 4 0 Median NaN NaN NaN 0 0 Median 43008000 29205000 13803000 43008000 29205000 13803000 0 0 0 8913 508 9156 32253;32254;32255;32256 48605;48606;48607;48608;48609;48610;48611;48612;48613;48614 48611 10 NLPIYSEEIVEMYK YTYSGLFCVVINPYKNLPIYSEEIVEMYKG KNLPIYSEEIVEMYKGKKRHEMPPHIYAIT K N L Y K G 0 0 1 0 0 0 3 0 0 2 1 1 1 0 1 1 0 0 2 1 0 0 14 0 1726.8488 A0A024R1N1;P35579;Q86XU5;B4E3S1;Q5BKV1;A0A0U4BW16 A0A024R1N1 126 139 MYH9 Myosin-9 no no 2 1.3266E-06 121.02 5 1.0167 1.2991 16.969 3 Median 1.0167 1.2991 16.969 3 0 Median NaN NaN NaN 0 0 Median 22833000 10348000 12486000 22833000 10348000 12486000 0 0 0 8914 61;490 9157;9158 32257;32258;32259;32260;32261 48615;48616;48617;48618;48619;48620 48620 27 5 NLPLADQGSSHHITVK IRRQIEHCEGRMTLKNLPLADQGSSHHITV LPLADQGSSHHITVKINELKSVQNDSQAIA K N L V K I 1 0 1 1 0 1 0 1 2 1 2 1 0 0 1 2 1 0 0 1 0 0 16 0 1715.8955 P15924;Q4LE79;B4E2A0;B4DKX6;B4DWT7 P15924 690 705 DSP;DSP variant protein Desmoplakin yes no 3 0.00048178 32.926 1 0.20829 0.26315 NaN 1 Median 0.20829 0.26315 NaN 1 0 Median NaN NaN NaN 0 0 Median 7374400 5216700 2157700 7374400 5216700 2157700 0 0 0 8915 1270 9159 32262 48621 48621 1 NLPLPPPPPPR PPPPGRGGRGGSRARNLPLPPPPPPRGGDL SRARNLPLPPPPPPRGGDLMAYDRRGRPGD R N L P R G 0 1 1 0 0 0 0 0 0 0 2 0 0 0 7 0 0 0 0 0 0 0 11 0 1193.6921 A0A024R228;P61978;B4DUQ1;Q5EC54;Q5T6W2;B4DFF1;B3KU16 A0A024R228 306 316 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 2 0.0035926 82.426 5 0.34884 0.47291 20.152 4 Median 0.34884 0.47291 20.152 4 0 Median NaN NaN NaN 0 0 Median 114020000 80120000 33897000 114020000 80120000 33897000 0 0 0 8916 77 9160 32263;32264;32265;32266;32267 48622;48623;48624;48625;48626;48627;48628;48629 48629 8 NLPNVIINEK RFLIKAPEGPPRKDKNLPNVIINEKRNIHA PRKDKNLPNVIINEKRNIHAAAHQVRVLPY K N L E K R 0 0 3 0 0 0 1 0 0 2 1 1 0 0 1 0 0 0 0 1 0 0 10 0 1152.6503 Q9BVJ6;B4E343 Q9BVJ6 663 672 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 0.0048661 91.265 4 2 0.84452 1.1475 1.6143 4 Median 0.92913 1.14 2.2024 2 0 Median 0.76173 1.1494 1.5129 2 0 Median 68118000 38003000 30115000 39584000 21106000 18479000 28534000 16897000 11637000 8917 1719 9161 32268;32269;32270;32271;32272;32273 48630;48631;48632;48633;48634;48635;48636;48637 48634 8 NLPYVYIPSK PIEVYCHLPVMCEDRNLPYVYIPSKTVRST MCEDRNLPYVYIPSKTVRSTWPPDLAQHWG R N L S K T 0 0 1 0 0 0 0 0 0 1 1 1 0 0 2 1 0 0 2 1 0 0 10 0 1192.6492 D6RC52;D6RCB9;Q9NX24;H0YC83 D6RC52 102 111 NHP2 H/ACA ribonucleoprotein complex subunit 2 yes no 2 0.0064785 89.886 2 2 0.64174 0.90689 5.1384 3 Median 0.71599 0.89747 NaN 1 0 Median 0.61504 0.94547 5.8913 2 0 Median 73222000 45375000 27846000 23433000 13665000 9767900 49789000 31710000 18078000 8918 990 9162 32274;32275;32276;32277 48638;48639;48640;48641;48642;48643 48639 6 NLQCLVIDEADR RLLDHMQNTPGFMYKNLQCLVIDEADRILD MYKNLQCLVIDEADRILDVGFEEELKQIIK K N L D R I 1 1 1 2 1 1 1 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 12 0 1444.698 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254;H7C452 Q4ZG72 202 213 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 9.8789E-10 129.16 3 0.90609 1.216 14.522 2 Median 0.90609 1.216 14.522 2 0 Median NaN NaN NaN 0 0 Median 20755000 11759000 8996800 20755000 11759000 8996800 0 0 0 8919 242 9163 32278;32279;32280 48644;48645;48646;48647 48646 4 NLQDVVER DALDPNAYEAFKASRNLQDVVERVLHNAQE EAFKASRNLQDVVERVLHNAQEVEKEPGQR R N L E R V 0 1 1 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 8 0 971.50361 P49916;B7Z6I3;K7ERZ5;K7EQB6 P49916 446 453 LIG3 DNA ligase 3;DNA ligase yes no 2 0.031837 50.607 1 0.8451 1.1571 NaN 1 Median 0.8451 1.1571 NaN 1 0 Median NaN NaN NaN 0 0 Median 6449100 3708500 2740500 6449100 3708500 2740500 0 0 0 8920 1356 9164 32281 48648 48648 1 NLQEAEEWYK ALRDVRQQYESVAAKNLQEAEEWYKSKFAD SVAAKNLQEAEEWYKSKFADLSEAANRNND K N L Y K S 1 0 1 0 0 1 3 0 0 0 1 1 0 0 0 0 0 1 1 0 0 0 10 0 1308.5986 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;B0YJC5;Q5JVS8;H7C5W5;B3KWQ6;P41219;F8W835 V9HWE1 283 292 HEL113;VIM;PRPH Vimentin;Peripherin yes no 2 0.0013465 77.732 1 1.1258 1.7063 NaN 1 Median NaN NaN NaN 0 0 Median 1.1258 1.7063 NaN 1 0 Median 9423100 4701500 4721600 0 0 0 9423100 4701500 4721600 8921 1245 9165 32282 48649 48649 1 NLQEGNEVDSQSSIR RLLRITKRTGMKEEKNLQEGNEVDSQSSIR NLQEGNEVDSQSSIRTEAKEASGETTGVDI K N L I R T 0 1 2 1 0 2 2 1 0 1 1 0 0 0 0 3 0 0 0 1 0 0 15 0 1674.7809 B4DLG2;O75152;E9PQ61 B4DLG2 468 482 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 2 8.6291E-15 158.42 4 2 1.1623 1.5345 14.055 4 Median 1.0136 1.3967 0.21998 2 0 Median 1.3315 1.765 6.7088 2 0 Median 22148000 10436000 11712000 11516000 5646000 5870300 10631000 4790100 5841200 8922 826 9166 32283;32284;32285;32286;32287;32288 48650;48651;48652;48653;48654;48655;48656;48657 48653 8 NLQEIQQAGER AAETEGISELPHVERNLQEIQQAGERLRSR HVERNLQEIQQAGERLRSRTLTRTSQETAD R N L E R L 1 1 1 0 0 3 2 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 11 0 1284.6422 H3BVG0;Q8N1F7;A8K897;H3BV11;H3BRI8;H3BM93 H3BVG0 32 42 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.00026278 118.71 4 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8742100 7331900 1410200 7331900 7331900 0 1410200 0 1410200 8923 1111 9167 32289;32290;32291;32292;32293 48658;48659;48660;48661;48662;48663 48661 6 NLQEQVMAVTAQVK GVLESDLPSAVTLLKNLQEQVMAVTAQVKS KNLQEQVMAVTAQVKSLTQKVQAGAYPTEK K N L V K S 2 0 1 0 0 3 1 0 0 0 1 1 1 0 0 0 1 0 0 3 0 0 14 0 1557.8185 Q8NEJ9;H0YJ17 Q8NEJ9 20 33 NGDN Neuroguidin yes no 2 3.9864E-05 73.273 2 0.41707 0.66429 1.9917 2 Median NaN NaN NaN 0 0 Median 0.41707 0.66429 1.9917 2 0 Median 164490000 113410000 51078000 0 0 0 164490000 113410000 51078000 8924 1654 9168 32294;32295 48664;48665;48666;48667;48668;48669 48668 732 6 NLQEVLGEEK GDAPSPEEKLHLITRNLQEVLGEEKLKEIL HLITRNLQEVLGEEKLKEILKERELKIYWG R N L E K L 0 0 1 0 0 1 3 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1157.5928 A0A0S2Z4R1;P54577;A0A0C4DGZ5;A0A0S2Z4P3 A0A0S2Z4R1 17 26 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.011774 100.02 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8396000 8396000 0 8396000 8396000 0 0 0 0 8925 468 9169 32296;32297 48670;48671 48671 2 NLQLFMENK IRYYNKVPVEKRVFKNLQLFMENKQPEDDL EKRVFKNLQLFMENKQPEDDLFDRLNTGIL K N L N K Q 0 0 2 0 0 1 1 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 9 0 1135.5696 P11387;B9EG90;B7Z9E8;B4DYD2;E5KMK7;E5KMK6;E5KMK5;Q969P6;E5RIC7;B4E061 P11387 550 558 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 2 0.0017674 92.439 3 2 0.76447 1.0082 14.642 5 Median 0.77184 0.97182 9.432 3 0 Median 0.73741 1.1802 6.972 2 0 Median 117980000 65974000 52009000 12792000 6905600 5886400 105190000 59069000 46122000 8926 1255 9170;9171 32298;32299;32300;32301;32302 48672;48673;48674;48675;48676;48677;48678 48675 503 7 NLQLFMENKQPEDDLFDR IRYYNKVPVEKRVFKNLQLFMENKQPEDDL LFMENKQPEDDLFDRLNTGILNKHLQDLME K N L D R L 0 1 2 3 0 2 2 0 0 0 3 1 1 2 1 0 0 0 0 0 0 0 18 1 2251.0579 P11387;B9EG90 P11387 550 567 TOP1 DNA topoisomerase 1 yes no 3 2.08E-17 97.618 4 2 0.74508 1.1344 20.803 6 Median 0.77517 1.0059 18.959 4 0 Median 0.74508 1.2881 4.6336 2 0 Median 170840000 99548000 71296000 43189000 23712000 19477000 127650000 75836000 51818000 8927 1255 9172;9173 32303;32304;32305;32306;32307;32308 48679;48680;48681;48682;48683;48684;48685;48686;48687;48688;48689 48688 503 11 NLQLFMENKQPEDDLFDRLNTGILNK IRYYNKVPVEKRVFKNLQLFMENKQPEDDL EDDLFDRLNTGILNKHLQDLMEGLTAKVFR K N L N K H 0 1 4 3 0 2 2 1 0 1 5 2 1 2 1 0 1 0 0 0 0 0 26 2 3104.5601 P11387;B9EG90 P11387 550 575 TOP1 DNA topoisomerase 1 yes no 3;4 2.2531E-31 146.97 6 2 0.67439 0.83691 10.796 8 Median 0.68034 0.85848 11.98 6 0 Median 0.4474 0.78598 5.7812 2 0 Median 161850000 96422000 65424000 75951000 45086000 30865000 85895000 51336000 34559000 8928 1255 9174;9175 32309;32310;32311;32312;32313;32314;32315;32316 48690;48691;48692;48693;48694;48695;48696;48697;48698;48699;48700;48701;48702;48703 48693 503 13 NLQNLLILTAIK LEKIVLDNSVFSEHRNLQNLLILTAIKADR EHRNLQNLLILTAIKADRTRVMEYINRLDN R N L I K A 1 0 2 0 0 1 0 0 0 2 4 1 0 0 0 0 1 0 0 0 0 0 12 0 1352.8391 A0A087WVQ6;Q00610;A0A087WX41;P53675 A0A087WVQ6 1027 1038 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2 2.9767E-07 142 3 0.4821 0.62233 8.3787 3 Plateau 0.4821 0.62233 8.3787 3 0 Plateau NaN NaN NaN 0 0 Median 7496100 4873800 2622300 7496100 4873800 2622300 0 0 0 8929 350 9176 32317;32318;32319 48704;48705;48706 48705 3 NLQQELETQNQK EILEKTTTIYEEDKRNLQQELETQNQKLQR DKRNLQQELETQNQKLQRQFSDKRRLEARL R N L Q K L 0 0 2 0 0 4 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 12 0 1471.7267 H7BYN4;Q02241 H7BYN4 588 599 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 6.9935E-32 208.11 5 1 0.96644 1.2275 23.781 5 Median 0.93661 1.1812 24.834 4 0 Median 1.0392 1.5781 NaN 1 0 Median 49830000 24612000 25218000 39509000 20000000 19509000 10321000 4611500 5709500 8930 1117 9177 32320;32321;32322;32323;32324;32325 48707;48708;48709;48710;48711;48712;48713 48709 7 NLQSFGTEEPAYSTR SARLSQSSQDSSPVRNLQSFGTEEPAYSTR NLQSFGTEEPAYSTRRVTRSQQQPTPVTPK R N L T R R 1 1 1 0 0 1 2 1 0 0 1 0 0 1 1 2 2 0 1 0 0 0 15 0 1698.7849 O95251 O95251 61 75 KAT7 Histone acetyltransferase KAT7 yes yes 2 5.6268E-09 142.97 3 2 0.52891 0.76469 6.4696 2 Median NaN NaN NaN 0 0 Median 0.52891 0.76469 6.4696 2 0 Median 21265000 10413000 10852000 5691700 0 5691700 15573000 10413000 5160400 8931 1217 9178 32326;32327;32328;32329;32330 48714;48715;48716;48717;48718;48719;48720 48716 7 NLQTYLQEEDTR SDKNSSVNLKIQVLKNLQTYLQEEDTRMQQ VLKNLQTYLQEEDTRMQQADRDWKKVAKQE K N L T R M 0 1 1 1 0 2 2 0 0 0 2 0 0 0 0 0 2 0 1 0 0 0 12 0 1508.7107 Q6IEH8;Q6KC79 Q6IEH8 2236 2247 NIPBL Nipped-B-like protein yes no 2 1.1108E-15 135.86 4 0.39418 0.55 24.19 3 Median 0.39418 0.55 24.19 3 0 Median NaN NaN NaN 0 0 Median 15112000 11159000 3953000 15112000 11159000 3953000 0 0 0 8932 1586 9179 32331;32332;32333;32334 48721;48722;48723;48724 48723 4 NLQYYDISAK DRKVKAKSIVFHRKKNLQYYDISAKSNYNF FHRKKNLQYYDISAKSNYNFEKPFLWLARK K N L A K S 1 0 1 1 0 1 0 0 0 1 1 1 0 0 0 1 0 0 2 0 0 0 10 0 1213.5979 B5MDF5;P62826;J3KQE5;F5H018;B4DV51 B5MDF5 160 169 RAN GTP-binding nuclear protein Ran yes no 2 0.0013196 106.6 5 1 0.66072 0.82993 46.94 4 Median 0.63232 0.79861 6.2168 3 0 Median 1.3563 2.0517 NaN 1 0 Median 112790000 70612000 42176000 90124000 61018000 29106000 22664000 9594800 13069000 8933 901 9180 32335;32336;32337;32338;32339;32340 48725;48726;48727;48728;48729;48730;48731;48732;48733;48734;48735 48733 11 NLRNEESVLLFTQIK GDSFYVPSGNYYNIKNLRNEESVLLFTQIK NLRNEESVLLFTQIKR______________ K N L I K R 0 1 2 0 0 1 2 0 0 1 3 1 0 1 0 1 1 0 0 1 0 0 15 1 1802.989 Q03188 Q03188 928 942 CENPC Centromere protein C yes yes 3 0.0028999 36.193 1 0.64716 0.83867 NaN 1 Median 0.64716 0.83867 NaN 1 0 Median NaN NaN NaN 0 0 Median 9729700 5794200 3935500 9729700 5794200 3935500 0 0 0 8934 1439 9181 32341 48736 48736 1 NLSASTVLTAQESFSGSLGHLQNR LNLQKKQLLSEEEKKNLSASTVLTAQESFS AQESFSGSLGHLQNRNNSCDSRGQTTKARF K N L N R N 2 1 2 0 0 2 1 2 1 0 4 0 0 1 0 5 2 0 0 1 0 0 24 0 2516.2619 P33981 P33981 202 225 TTK Dual specificity protein kinase TTK yes yes 3 0.034888 45.511 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 747350 747350 0 747350 747350 0 0 0 0 8935 1316 9182 32342 48737 48737 1 NLSELQDTSLQQLVSQR TDEGKEINEKSSQLKNLSELQDTSLQQLVS SELQDTSLQQLVSQRHSTPQNKNAVSVHSN K N L Q R H 0 1 1 1 0 4 1 0 0 0 4 0 0 0 0 3 1 0 0 1 0 0 17 0 1958.0069 Q5QJE6;J3KP30;B7Z854 Q5QJE6 322 338 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2 9.6036E-114 281.68 5 2 0.88964 1.2188 7.0611 6 Median 0.92005 1.2467 2.9332 4 0 Median 0.67283 1.0981 4.2517 2 0 Median 338660000 189000000 149660000 167820000 88542000 79274000 170840000 100460000 70383000 8936 1561 9183 32343;32344;32345;32346;32347;32348;32349 48738;48739;48740;48741;48742;48743;48744;48745;48746;48747;48748;48749;48750 48739 13 NLSFNELYPSGTLK EQEKLEAQDSGEEARNLSFNELYPSGTLKL RNLSFNELYPSGTLKLQYNFDTIDQQFCDL R N L L K L 0 0 2 0 0 0 1 1 0 0 3 1 0 1 1 2 1 0 1 0 0 0 14 0 1581.8039 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1539 1552 AHCTF1 Protein ELYS yes no 2 5.7416E-28 160.91 4 2 0.84653 1.0459 19.066 6 Median 0.86825 1.0683 5.3862 4 0 Median 0.48269 0.76084 6.0311 2 0 Median 143070000 83662000 59411000 69908000 36283000 33625000 73165000 47379000 25786000 8937 1670 9184 32350;32351;32352;32353;32354;32355 48751;48752;48753;48754;48755;48756;48757;48758;48759;48760;48761 48761 11 NLSLSIDER RTRSRSPLGFYVHLKNLSLSIDERDLRNFF FYVHLKNLSLSIDERDLRNFFRGTDLTDEQ K N L E R D 0 1 1 1 0 0 1 0 0 1 2 0 0 0 0 2 0 0 0 0 0 0 9 0 1045.5404 B9ZVT1;Q8IXT5 B9ZVT1 290 298 RBM12B RNA-binding protein 12B yes no 2 0.0074677 99.013 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1264900 1264900 0 1264900 1264900 0 0 0 0 8938 931 9185 32356 48762 48762 1 NLSPGAVESDVR DQTVRVWDISGLRKKNLSPGAVESDVRGIT RKKNLSPGAVESDVRGITGVDLFGTTDAVV K N L V R G 1 1 1 1 0 0 1 1 0 0 1 0 0 0 1 2 0 0 0 2 0 0 12 0 1242.6204 P53621 P53621 171 182 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.00065364 69.672 1 0.54583 0.76698 NaN 1 Median 0.54583 0.76698 NaN 1 0 Median NaN NaN NaN 0 0 Median 5988100 4212400 1775700 5988100 4212400 1775700 0 0 0 8939 1371 9186 32357 48763 48763 1 NLSQEIIELLK RELNSTYSEQDPLLKNLSQEIIELLKKLVG PLLKNLSQEIIELLKKLVGLESFSLAFASV K N L L K K 0 0 1 0 0 1 2 0 0 2 3 1 0 0 0 1 0 0 0 0 0 0 11 0 1298.7446 O75691;B4DN27 O75691 2691 2701 UTP20 Small subunit processome component 20 homolog yes no 2 1.6541E-25 209.73 5 1.0135 1.2802 11.063 4 Median 1.0135 1.2802 11.063 4 0 Median NaN NaN NaN 0 0 Median 27425000 9920700 17505000 27425000 9920700 17505000 0 0 0 8940 1207 9187 32358;32359;32360;32361;32362 48764;48765;48766;48767;48768;48769;48770 48764 7 NLSSNEAISLEEIR KGFNKVVLKHLKKTKNLSSNEAISLEEIRI KNLSSNEAISLEEIRIRVVQMLGSLGGQIN K N L I R I 1 1 2 0 0 0 3 0 0 2 2 0 0 0 0 3 0 0 0 0 0 0 14 0 1573.7948 P78527;B4DL41 P78527 839 852 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 3.6648E-14 158.04 4 2 0.48124 0.64006 35.594 5 Median 0.40146 0.53358 13.063 3 0 Median 0.68237 1.0361 3.5829 2 0 Median 95938000 68510000 27428000 59996000 47137000 12859000 35942000 21373000 14569000 8941 1427 9188 32363;32364;32365;32366;32367;32368 48771;48772;48773;48774;48775;48776;48777;48778;48779;48780;48781;48782 48773 12 NLTEDNSQNQDLIAK DSNPFLTQWVIYAIRNLTEDNSQNQDLIAK NLTEDNSQNQDLIAKMEEQGLADASLLKKV R N L A K M 1 0 3 2 0 2 1 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 15 0 1701.817 Q9UBB4;Q9NTC6;B1AHE3 Q9UBB4 424 438 ATXN10;DKFZp434I1726 Ataxin-10 yes no 2 4.508E-05 87.719 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6189200 3491200 2698000 3491200 3491200 0 2698000 0 2698000 8942 1780 9189 32369;32370 48783;48784 48784 2 NLTVELEQK EGEHQLWKEQNLELRNLTVELEQKIQVLQS QNLELRNLTVELEQKIQVLQSKNASLQDTL R N L Q K I 0 0 1 0 0 1 2 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 9 0 1072.5764 P49454 P49454 2656 2664 CENPF Centromere protein F yes yes 2 0.040551 69.628 1 0.79488 1.0448 NaN 1 Median 0.79488 1.0448 NaN 1 0 Median NaN NaN NaN 0 0 Median 2277100 1040900 1236100 2277100 1040900 1236100 0 0 0 8943 1351 9190 32371 48785 48785 1 NLTVILSDASAPGEGEHK RYYIADRLNNDPGWKNLTVILSDASAPGEG VILSDASAPGEGEHKIMDYIRRQRAQPNHD K N L H K I 2 0 1 1 0 0 2 2 1 1 2 1 0 0 1 2 1 0 0 1 0 0 18 0 1836.9218 B4E0B9;B4DZC3;B3KMC9;Q9H0D6 B4E0B9 114 131 XRN2 5-3 exoribonuclease 2 yes no 2;3 4.8616E-17 98.531 2 0.9786 1.2332 24.338 2 Median 0.9786 1.2332 24.338 2 0 Median NaN NaN NaN 0 0 Median 9370200 4430900 4939300 9370200 4430900 4939300 0 0 0 8944 754 9191 32372;32373 48786;48787 48787 2 NLTWTLSNLCR LAVPEMSSLACGYLRNLTWTLSNLCRNKNP GYLRNLTWTLSNLCRNKNPAPPIDAVEQIL R N L C R N 0 1 2 0 1 0 0 0 0 0 3 0 0 0 0 1 2 1 0 0 0 0 11 0 1376.6871 Q7Z726;A8K7D9;P52292 Q7Z726 228 238 KPNA2 Importin subunit alpha;Importin subunit alpha-1 yes no 2 0.012075 55.567 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5825700 5825700 0 0 0 0 5825700 5825700 0 8945 633 9192 32374;32375 48788;48789 48788 2 NLTYSAPLYVDITK DGAPSPMMPNEARLRNLTYSAPLYVDITKT RNLTYSAPLYVDITKTVIKEGEEQLQTQHQ R N L T K T 1 0 1 1 0 0 0 0 0 1 2 1 0 0 1 1 2 0 2 1 0 0 14 0 1596.8399 C9J2Y9;B4DHJ3;P30876;B4DR40;C9J4M6;B4DH29 C9J2Y9 110 123 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 2 0.00054107 58.978 1 1.1975 1.5355 NaN 1 Median 1.1975 1.5355 NaN 1 0 Median NaN NaN NaN 0 0 Median 3294200 1888600 1405600 3294200 1888600 1405600 0 0 0 8946 807 9193 32376 48790 48790 1 NLVDNITGQR TETLEKVSITEAMHRNLVDNITGQRLLEAQ EAMHRNLVDNITGQRLLEAQACTGGIIDPS R N L Q R L 0 1 2 1 0 1 0 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1128.5887 Q15149;D3DWL0;Q96IE3 Q15149 4438 4447 PLEC;PLEC1 Plectin yes no 2 1.7533E-16 175.51 3 0.62539 0.84997 5.3122 3 Median 0.62539 0.84997 5.3122 3 0 Median NaN NaN NaN 0 0 Median 134290000 83138000 51148000 134290000 83138000 51148000 0 0 0 8947 1507 9194 32377;32378;32379 48791;48792;48793 48793 3 NLVDNVAK KDHYKLALGQINIAKNLVDNVAKDYVRLMK GQINIAKNLVDNVAKDYVRLMKYGDSLYRC K N L A K D 1 0 2 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 8 0 871.47633 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;O60747;Q5T3R7 Q53GS0 104 111 GTPBP4 Nucleolar GTP-binding protein 1 yes no 1;2 9.468E-05 139.88 4 1 0.72448 0.94928 3.0629 4 Median 0.73345 0.96178 3.6258 3 0 Plateau 0.59903 0.96675 NaN 1 0 Median 268560000 152590000 115970000 228460000 127360000 101100000 40097000 25225000 14873000 8948 975 9195 32380;32381;32382;32383;32384 48794;48795;48796;48797;48798 48795 5 NLVELSFLPGDTGKPDVLSASLEGQLTK GKLLTARVLRLNHQKNLVELSFLPGDTGKP KPDVLSASLEGQLTKQEERKTEAEERDQKG K N L T K Q 1 0 1 2 0 1 2 3 0 0 6 2 0 1 2 3 2 0 0 2 0 0 28 1 2927.5492 Q14690;B4DH82 Q14690 1389 1416 PDCD11 Protein RRP5 homolog yes no 3 4.4046E-59 175.34 4 0.99385 1.2139 7.4233 4 Median 0.99385 1.2139 7.4233 4 0 Median NaN NaN NaN 0 0 Median 131870000 60381000 71490000 131870000 60381000 71490000 0 0 0 8949 1494 9196 32385;32386;32387;32388 48799;48800;48801;48802;48803;48804;48805;48806 48800 8 NLVPGESVYGEK GVFICRGKEDALVTKNLVPGESVYGEKRVS VTKNLVPGESVYGEKRVSISEGDDKIEYRA K N L E K R 0 0 1 0 0 0 2 2 0 0 1 1 0 0 1 1 0 0 1 2 0 0 12 0 1290.6456 Q96BS4;P22087;M0R299;M0QXL5;M0R2Q4;B4DLD4;M0R0P1;M0R2U2;M0R1H0;M0R2B0 Q96BS4 49 60 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2 5.5172E-05 129.88 4 2 0.70333 0.90794 5.0886 6 Median 0.72453 0.94281 3.7634 4 0 Median 0.54348 0.86155 2.4453 2 0 Median 505320000 303740000 201580000 330150000 187630000 142520000 175180000 116110000 59062000 8950 1288 9197 32389;32390;32391;32392;32393;32394 48807;48808;48809;48810;48811;48812;48813;48814;48815;48816;48817;48818;48819;48820;48821;48822;48823;48824;48825;48826 48814 20 NLVPLLLAPENLVEK GRLKDIDEDFKRELRNLVPLLLAPENLVEK NLVPLLLAPENLVEKEISGSKVTCRDLVEY R N L E K E 1 0 2 0 0 0 2 0 0 0 5 1 0 0 2 0 0 0 0 2 0 0 15 0 1660.9764 C9JQQ5;B7Z8V5;B7Z2H0;B5MCN0;Q8NHH9 C9JQQ5 144 158 ATL2 Atlastin-2 yes no 2 0.0001327 68.551 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3997800 3222800 775080 3997800 3222800 775080 0 0 0 8951 899 9198 32395;32396 48827;48828 48827 2 NLVTGIQLNPNNHLQLYSCSLDGTIK STVTEECVHILHGHRNLVTGIQLNPNNHLQ NHLQLYSCSLDGTIKLWDYIDGILIKTFIV R N L I K L 0 0 4 1 1 2 0 2 1 2 5 1 0 0 1 2 2 0 1 1 0 0 26 0 2911.4862 A8K330;Q8IWA0 A8K330 58 83 WDR75 WD repeat-containing protein 75 yes no 3 9.5653E-49 170.8 4 0.85791 1.0742 8.0811 4 Median 0.85791 1.0742 8.0811 4 0 Median NaN NaN NaN 0 0 Median 210710000 114270000 96432000 210710000 114270000 96432000 0 0 0 8952 588 9199 32397;32398;32399;32400 48829;48830;48831;48832;48833;48834 48829 5 NLYAANGIGAVLAHK RALAIYKQVLRNDAKNLYAANGIGAVLAHK NLYAANGIGAVLAHKGYFREARDVFAQVRE K N L H K G 4 0 2 0 0 0 0 2 1 1 2 1 0 0 0 0 0 0 1 1 0 0 15 0 1510.8256 A8K6X9;Q6PD62 A8K6X9 646 660 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 3 0.0006949 42.317 1 0.76694 0.96661 NaN 1 Median 0.76694 0.96661 NaN 1 0 Median NaN NaN NaN 0 0 Median 7516200 4353200 3162900 7516200 4353200 3162900 0 0 0 8953 629 9200 32401 48835 48835 1 NLYDFEVEYLCDYK RLAKLSCPALGISKRNLYDFEVEYLCDYKK RNLYDFEVEYLCDYKKIREQEYYLVKWRGY R N L Y K K 0 0 1 2 1 0 2 0 0 0 2 1 0 1 0 0 0 0 3 1 0 0 14 0 1869.8131 O43463 O43463 39 52 SUV39H1 Histone-lysine N-methyltransferase SUV39H1 yes yes 2 0.0035453 83.137 1 0.67849 0.89611 NaN 1 Median 0.67849 0.89611 NaN 1 0 Median NaN NaN NaN 0 0 Median 2600800 1154500 1446400 2600800 1154500 1446400 0 0 0 8954 1185 9201 32402 48836 48836 1 NLYDIGEQLDSEDLASLK ______________________________ DIGEQLDSEDLASLKFLSLDYIPQRKQEPI R N L L K F 1 0 1 3 0 1 2 1 0 1 4 1 0 0 0 2 0 0 1 0 0 0 18 0 2021.9793 C3S3G0;E7EQ01;E7EVN1;E7ETB7;E7EQ06;A0A024R3Z9;Q6NVI2;A0A0A0MS31;B6CGU5;B5BU46;A0A024R3Z8;Q14790 C3S3G0 6 23 CASP8;hCG_16983 Caspase-8;Caspase-8 subunit p18;Caspase-8 subunit p10 yes no 2 5.0004E-06 68.809 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1389900 1389900 0 1389900 1389900 0 0 0 0 8955 112 9202 32403 48837 48837 1 NLYIISVK PVGAVINCADNTGAKNLYIISVKGIKGRLN ADNTGAKNLYIISVKGIKGRLNRLPAAGVG K N L V K G 0 0 1 0 0 0 0 0 0 2 1 1 0 0 0 1 0 0 1 1 0 0 8 0 948.56442 Q9BTQ7;A0A024R1Q8;P62829;J3KT29;C9JD32;B9ZVP7;A4D142 Q9BTQ7 30 37 RPL23;LOC222901 60S ribosomal protein L23 yes no 1;2 6.133E-06 184.49 7 2 0.88151 1.1508 7.9728 9 Median 0.88792 1.1651 6.2036 7 0 Median 0.64714 1.0198 4.9372 2 0 Median 3025100000 1669700000 1355400000 2236800000 1200300000 1036600000 788240000 469400000 318840000 8956 63 9203 32404;32405;32406;32407;32408;32409;32410;32411;32412 48838;48839;48840;48841;48842;48843;48844;48845;48846;48847;48848;48849;48850;48851;48852;48853 48838 15 NMDAIIVDSEK TQKKYQIAVTKVLGKNMDAIIVDSEKTGRD VLGKNMDAIIVDSEKTGRDCIQYIKEQRGE K N M E K T 1 0 1 2 0 0 1 0 0 2 0 1 1 0 0 1 0 0 0 1 0 0 11 0 1233.5911 Q14683;G8JLG1;Q6P2R1;Q6MZR8;A8K7A6;B7Z709 Q14683 541 551 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.027698 53.08 1 0.76394 1.0522 NaN 1 Median NaN NaN NaN 0 0 Median 0.76394 1.0522 NaN 1 0 Median 3652600 2085800 1566800 0 0 0 3652600 2085800 1566800 8957 1492 9204 32413 48854 48854 0 NMDPLNDNIATLLHQSSDK YAGKVDYKADEWLMKNMDPLNDNIATLLHQ LNDNIATLLHQSSDKFVSELWKDVDRIIGL K N M D K F 1 0 3 3 0 1 0 0 1 1 3 1 1 0 1 2 1 0 0 0 0 0 19 0 2125.011 A0A024R1N1;P35579;Q86XU5;B4E3S1;A0A0U4BW16 A0A024R1N1 588 606 MYH9 Myosin-9 no no 3 7.9078E-18 118.23 8 2 0.97678 1.2246 69.47 10 Median 0.92132 1.1511 15.288 8 0 Median 3.5857 5.6766 3.53 2 0 Median 183140000 72963000 110180000 106080000 57731000 48344000 77065000 15232000 61833000 8958 61;490 9205;9206 32414;32415;32416;32417;32418;32419;32420;32421;32422;32423 48855;48856;48857;48858;48859;48860;48861;48862;48863;48864;48865;48866;48867 48861 28 13 NMFLVGEGDSVITQVLNK QVIMEKSTMLYNKFKNMFLVGEGDSVITQV LVGEGDSVITQVLNKSLAEQRQHEEANKTK K N M N K S 0 0 2 1 0 1 1 2 0 1 2 1 1 1 0 1 1 0 0 3 0 0 18 0 1963.0085 O75475 O75475 425 442 PSIP1 PC4 and SFRS1-interacting protein yes yes 2 3.0936E-17 96.866 1 0.43909 0.69205 NaN 1 Median NaN NaN NaN 0 0 Median 0.43909 0.69205 NaN 1 0 Median 62055000 42717000 19338000 0 0 0 62055000 42717000 19338000 8959 1201 9207 32424 48868 48868 437 1 NMGGPYGGGNYGPGGSGGSGGYGGR SNYGPMKSGNFGGSRNMGGPYGGGNYGPGG YGPGGSGGSGGYGGRSRY____________ R N M G R S 0 1 2 0 0 0 0 14 0 0 0 0 1 0 2 2 0 0 3 0 0 0 25 0 2188.8981 P22626;A0A024RA28 P22626 326 350 HNRNPA2B1;HNRPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2 4.7487E-27 159.81 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2354200 2354200 0 2354200 2354200 0 0 0 0 8960 1290 9208 32425;32426 48869;48870 48870 544 2 NMGKPAQPALSREELEALFLPYDLK STFSPSLALNIIQNRNMGKPAQPALSREEL SREELEALFLPYDLKRLEMYSRNMVDYHLI R N M L K R 3 1 1 1 0 1 3 1 0 0 5 2 1 1 3 1 0 0 1 0 0 0 25 2 2829.4735 Q9H0A0;A0A087WV29 Q9H0A0 799 823 NAT10 N-acetyltransferase 10 yes no 4 2.4596E-05 42.708 1 0.58991 1.01 NaN 1 Median NaN NaN NaN 0 0 Median 0.58991 1.01 NaN 1 0 Median 6078200 4359800 1718400 0 0 0 6078200 4359800 1718400 8961 1730 9209 32427 48871 48871 789 1 NMQDMVEDYR DQLKSDQSRLDSELKNMQDMVEDYRNKYED DSELKNMQDMVEDYRNKYEDEINKRTNAEN K N M Y R N 0 1 1 2 0 1 1 0 0 0 0 0 2 0 0 0 0 0 1 1 0 0 10 0 1299.5224 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 258 267 KRT1 Keratin, type II cytoskeletal 1 no no 2 7.5417E-05 115.71 7 6 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79525000 79318000 207490 21388000 21181000 207490 58137000 58137000 0 + 8962 1113;1114 9210;9211;9212 32428;32429;32430;32431;32432;32433;32434;32435;32436;32437;32438;32439;32440 48872;48873;48874;48875;48876;48877;48878;48879;48880;48881;48882;48883;48884 48876 395;396 13 NMQDVVEDFK ESITTERGRLEAELRNMQDVVEDFKVRYED EAELRNMQDVVEDFKVRYEDEINKRTAAEN R N M F K V 0 0 1 2 0 1 1 0 0 0 0 1 1 1 0 0 0 0 0 2 0 0 10 0 1223.5492 CON__O95678;O95678 CON__O95678 227 236 KRT75 Keratin, type II cytoskeletal 75 no no 2 0.012243 109.44 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2744900 2744900 0 2744900 2744900 0 0 0 0 + 8963 946 9213 32441 48885 48885 321 1 NMSGSLYEMVSR NEEEVEKRFEGRLTKNMSGSLYEMVSRVMK LTKNMSGSLYEMVSRVMKALVNRKITVPGN K N M S R V 0 1 1 0 0 0 1 1 0 0 1 0 2 0 0 3 0 0 1 1 0 0 12 0 1372.6115 A0A024R4Z6;Q08945 A0A024R4Z6 305 316 SSRP1 FACT complex subunit SSRP1 yes no 2 0.00025503 74.962 2 0.54454 0.8386 1.2223 2 Median NaN NaN NaN 0 0 Median 0.54454 0.8386 1.2223 2 0 Median 41855000 26515000 15340000 0 0 0 41855000 26515000 15340000 8964 132 9214 32442;32443 48886;48887 48886 68;69 2 NMSVHLSPCFR LHYIRKYNRFEKRHKNMSVHLSPCFRDVQI KRHKNMSVHLSPCFRDVQIGDIVTVGECRP K N M F R D 0 1 1 0 1 0 0 0 1 0 1 0 1 1 1 2 0 0 0 1 0 0 11 0 1346.6224 P62280;M0QZC5;M0R1H5 P62280 108 118 RPS11 40S ribosomal protein S11 yes no 2;3 9.1741E-05 126.39 7 0.77291 1.0445 16.064 6 Median 0.77291 1.0445 16.064 6 0 Median NaN NaN NaN 0 0 Median 105400000 56720000 48679000 105400000 56720000 48679000 0 0 0 8965 1404 9215;9216 32444;32445;32446;32447;32448;32449;32450 48888;48889;48890;48891;48892;48893;48894;48895 48889 613 8 NNAFPCQVNIK VIVRKEDVTSKLDEKNNAFPCQVNIKQKMQ LDEKNNAFPCQVNIKQKMQELNNEINMQQT K N N I K Q 1 0 3 0 1 1 0 0 0 1 0 1 0 1 1 0 0 0 0 1 0 0 11 0 1303.6343 B4DSL6;A8K5D9;A0A024RA49;Q9NQW6;H7C1K5 B4DSL6 584 594 ANLN Actin-binding protein anillin yes no 2 0.0038911 77.318 2 0.68431 0.85569 NaN 1 Median 0.68431 0.85569 NaN 1 0 Median NaN NaN NaN 0 0 Median 1526600 878280 648300 1526600 878280 648300 0 0 0 8966 235 9217 32451;32452 48896;48897 48897 2 NNALVPGTIQVNGHGGQPSK TLSKSSAVIEQGDCKNNALVPGTIQVNGHG PGTIQVNGHGGQPSKLVKRGPGRKPKVEVN K N N S K L 1 0 3 0 0 2 0 4 1 1 1 1 0 0 2 1 1 0 0 2 0 0 20 0 1987.0235 Q8WWQ0;Q9NWP3 Q8WWQ0 1614 1633 PHIP PH-interacting protein yes no 3 1.7095E-10 67.396 1 2 0.77726 1.0715 NaN 1 Median NaN NaN NaN 0 0 Median 0.77726 1.0715 NaN 1 0 Median 11353000 9261300 2091300 4201600 4201600 0 7151000 5059700 2091300 8967 1668 9218 32453;32454;32455 48898;48899;48900;48901 48898 4 NNASTDYDLSDK KIGQGYLIKDGKLIKNNASTDYDLSDKSIN LIKNNASTDYDLSDKSINPLGGFVHYGEVT K N N D K S 1 0 2 3 0 0 0 0 0 0 1 1 0 0 0 2 1 0 1 0 0 0 12 0 1341.5685 P39023;Q8TBW1;Q9NY85;G5E9G0;B3KS36;Q49AJ9;Q9BT63;B5MCW2 P39023 301 312 RPL3;rpl3 60S ribosomal protein L3 yes no 2 2.7478E-25 202.96 5 2 0.72927 1.0032 9.6568 6 Median 0.73016 0.96543 4.8662 4 0 Median 0.72927 1.1537 2.0176 2 0 Median 1724800000 990660000 734110000 1454700000 834560000 620150000 270050000 156100000 113950000 8968 1330 9219 32456;32457;32458;32459;32460;32461;32462 48902;48903;48904;48905;48906;48907;48908;48909;48910;48911;48912;48913;48914 48902 13 NNATKQMHFRVQVR VQRMKSKWMLKTGMKNNATKQMHFRVQVRF KNNATKQMHFRVQVRF______________ K N N V R F 1 2 2 0 0 2 0 0 1 0 0 1 1 1 0 0 1 0 0 2 0 0 14 2 1727.9002 Q969S3 Q969S3 463 476 ZNF622 Zinc finger protein 622 yes yes 4 0.0030616 26.969 2 0.80774 0.98151 1.5672 2 Median 0.80774 0.98151 1.5672 2 0 Median NaN NaN NaN 0 0 Median 119190000 67986000 51202000 119190000 67986000 51202000 0 0 0 8969 1679 9220 32463;32464 48915;48916 48915 2 NNAYLAQSPQLYK ASEGGANVFTVSYFKNNAYLAQSPQLYKQM FKNNAYLAQSPQLYKQMCICADFEKVFSIG K N N Y K Q 2 0 2 0 0 2 0 0 0 0 2 1 0 0 1 1 0 0 2 0 0 0 13 0 1508.7623 D3DP78;A0A140VJW5;P14868;Q53T60 D3DP78 209 221 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 2.9085E-08 102.95 2 0.48446 0.6124 NaN 1 Median 0.48446 0.6124 NaN 1 0 Median NaN NaN NaN 0 0 Median 11097000 8800600 2296300 11097000 8800600 2296300 0 0 0 8970 504 9221 32465;32466 48917;48918;48919 48918 3 NNDLQDNYLSEQNK HFESLEEELKKMKSKNNDLQDNYLSEQNKN KNNDLQDNYLSEQNKNKLLASQLEEIKLQI K N N N K N 0 0 4 2 0 2 1 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 14 0 1693.7544 A0A024RAC0;Q86V48 A0A024RAC0 319 332 LUZP1 Leucine zipper protein 1 yes no 2 8.4965E-28 185.25 2 1.3075 1.6597 NaN 1 Median 1.3075 1.6597 NaN 1 0 Median NaN NaN NaN 0 0 Median 8325900 4360400 3965500 8325900 4360400 3965500 0 0 0 8971 238 9222 32467;32468 48920;48921 48920 2 NNEDISIIPPLFTVSVDHR FFDEESYSLLRKAQRNNEDISIIPPLFTVS ISIIPPLFTVSVDHRGTWNGPWVSTEVLAA R N N H R G 0 1 2 2 0 0 1 0 1 3 1 0 0 1 2 2 1 0 0 2 0 0 19 0 2165.1117 A6NLM8;P51571 A6NLM8 96 114 SSR4 Translocon-associated protein subunit delta yes no 3 0.00042406 72.583 2 0.58281 0.77637 34.684 2 Median 0.58281 0.77637 34.684 2 0 Median NaN NaN NaN 0 0 Median 4509100 3095100 1414000 4509100 3095100 1414000 0 0 0 8972 571 9223 32469;32470 48922;48923;48924 48923 3 NNEELVVSASCK PETELSLRVGKDQRRNNEELVVSASCKEPE QRRNNEELVVSASCKEPEQEPVPAQFQKVK R N N C K E 1 0 2 0 1 0 2 0 0 0 1 1 0 0 0 2 0 0 0 2 0 0 12 0 1348.6293 B4DES6;B7Z9P6;G3XAG1;Q96ME7;Q658M0 B4DES6 425 436 ZNF512;DKFZp666L156 Zinc finger protein 512 yes no 2 2.584E-07 96.229 3 0.78248 0.99128 NaN 1 Median 0.78248 0.99128 NaN 1 0 Median NaN NaN NaN 0 0 Median 11902000 8734200 3167600 11902000 8734200 3167600 0 0 0 8973 799 9224 32471;32472;32473 48925;48926;48927 48927 3 NNEELVVSASCKEPEQEPVPAQFQK PETELSLRVGKDQRRNNEELVVSASCKEPE CKEPEQEPVPAQFQKVKPPKTNHKRGRK__ R N N Q K V 2 0 2 0 1 3 5 0 0 0 1 2 0 1 3 2 0 0 0 3 0 0 25 1 2856.36 B4DES6;B7Z9P6;G3XAG1;Q96ME7;Q658M0 B4DES6 425 449 ZNF512;DKFZp666L156 Zinc finger protein 512 yes no 3 2.0929E-11 102.9 2 0.76053 0.93052 14.063 2 Median 0.76053 0.93052 14.063 2 0 Median NaN NaN NaN 0 0 Median 6037200 2963600 3073500 6037200 2963600 3073500 0 0 0 8974 799 9225 32474;32475 48928;48929 48929 2 NNELIAVGK GKELGFDASEVELTRNNELIAVGKGSSLKR EVELTRNNELIAVGKGSSLKRLPVFGMEPR R N N G K G 1 0 2 0 0 0 1 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 9 0 956.5291 Q6FI18;O00622;B4DI61;Q53FA4;Q9UID7 Q6FI18 195 203 CYR61 Protein CYR61 yes no 2 0.0027589 81.296 1 2 1.6959 2.289 13.591 2 Median 1.7233 2.0793 NaN 1 0 Median 1.6688 2.5199 NaN 1 0 Median 32383000 12764000 19618000 23797000 9411200 14386000 8585400 3353200 5232200 8975 1168 9226 32476;32477;32478 48930;48931;48932;48933 48931 4 NNFAVGYR GYQMTFDSAKSKLTRNNFAVGYRTGDFQLH AKSKLTRNNFAVGYRTGDFQLHTNVNDGTE R N N Y R T 1 1 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 1 0 0 8 0 939.45626 A0A024QZT0;P45880;A0A0A0MR02;A0A024QZN9;B4DKM5;Q5JSD2;Q5JSD1 A0A024QZT0 178 185 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2 2.0273E-07 152.26 6 2 0.59683 0.81844 65.486 5 Median 0.58128 0.8022 8.0245 4 0 Median 2.3833 3.3641 NaN 1 0 Median 484870000 301630000 183240000 472040000 299350000 172690000 12837000 2280800 10556000 8976 20 9227 32479;32480;32481;32482;32483;32484;32485;32486 48934;48935;48936;48937;48938;48939;48940;48941;48942;48943;48944;48945 48941 12 NNFSDTGNFGFGIQEHIDLGIK ILEKGLKVREYELRKNNFSDTGNFGFGIQE NFGFGIQEHIDLGIKYDPSIGIYGLDFYVV K N N I K Y 0 0 3 2 0 1 1 4 1 3 1 1 0 3 0 1 1 0 0 0 0 0 22 0 2422.1553 Q5VVD0;P62913;Q5VVC8;Q08ES8;Q5VVC9 Q5VVD0 97 118 RPL11 60S ribosomal protein L11 yes no 3 4.9548E-103 203.77 9 2 0.75302 1.0067 11.651 8 Median 0.75852 0.99684 11.054 6 0 Median 0.69396 1.1054 2.5426 2 0 Median 1344900000 772470000 572390000 1214200000 696670000 517550000 130630000 75794000 54836000 8977 1416 9228 32487;32488;32489;32490;32491;32492;32493;32494;32495;32496;32497 48946;48947;48948;48949;48950;48951;48952;48953;48954;48955;48956;48957;48958;48959;48960;48961;48962;48963 48956 18 NNICSQPDLHAIGLSIIPAR HKVHLLCLLANGFYRNNICSQPDLHAIGLS QPDLHAIGLSIIPARFTRVLPRDVDTYYLS R N N A R F 2 1 2 1 1 1 0 1 1 4 2 0 0 0 2 2 0 0 0 0 0 0 20 0 2188.1423 A0A024R2M8;X5DRB1;A8K146;Q01831;D9I4E1;D2CPI9;D2CPJ0 A0A024R2M8 221 240 XPC DNA repair protein complementing XP-C cells yes no 3 3.8312E-16 150.45 4 2 0.6252 0.89512 12.042 6 Median 0.68547 0.92702 14.99 4 0 Median 0.57291 0.83963 6.1593 2 0 Median 136210000 79625000 56582000 105650000 60669000 44983000 30556000 18957000 11599000 8978 89 9229 32498;32499;32500;32501;32502;32503 48964;48965;48966;48967;48968;48969;48970;48971;48972;48973;48974;48975;48976;48977;48978 48967 15 NNMFEISDR YEQTKNAQFIIISLRNNMFEISDRLIGIYK IIISLRNNMFEISDRLIGIYKTYNITKSVA R N N D R L 0 1 2 1 0 0 1 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 9 0 1124.4921 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1253 1261 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.0061981 60.91 2 3 0.59778 0.83911 7.7663 4 Median 0.61424 0.84124 NaN 1 0 Median 0.60317 0.86058 9.1346 3 0 Plateau 27012000 16522000 10491000 4321700 2654400 1667300 22691000 13867000 8823200 8979 1760 9230;9231 32504;32505;32506;32507;32508 48979;48980;48981;48982;48983;48984;48985 48980 812 7 NNPPTLVGDFTK NSDMHPMRVLFLIPKNNPPTLVGDFTKSFK IPKNNPPTLVGDFTKSFKEFIDACLNKDPS K N N T K S 0 0 2 1 0 0 0 1 0 0 1 1 0 1 2 0 2 0 0 1 0 0 12 0 1301.6616 Q9NWX4;Q8NBY1;B4E0Y9;Q9P289;Q96SR7 Q9NWX4 111 122 STK26 Serine/threonine-protein kinase 26 yes no 2 0.00087204 110.38 3 1 0.45068 0.57634 3.3055 2 Median 0.45068 0.57634 3.3055 2 0 Median NaN NaN NaN 0 0 Median 21849000 13137000 8711700 17050000 13137000 3912800 4798900 0 4798900 8980 886 9232 32509;32510;32511;32512 48986;48987;48988;48989;48990 48986 5 NNQFQALLQYADPVNAHYAK FSKFGTVLKIITFTKNNQFQALLQYADPVN ALLQYADPVNAHYAKMALDGQNIYNACCTL K N N A K M 4 0 3 1 0 3 0 0 1 0 2 1 0 1 1 0 0 0 2 1 0 0 20 0 2304.1287 A0A024R163;O95758 A0A024R163 217 236 ROD1;PTBP3 Polypyrimidine tract-binding protein 3 yes no 3 5.9851E-05 90.755 2 0.31027 0.39375 NaN 1 Median 0.31027 0.39375 NaN 1 0 Median NaN NaN NaN 0 0 Median 7046300 4780600 2265700 7046300 4780600 2265700 0 0 0 8981 52 9233 32513;32514 48991;48992 48992 2 NNQFQALLQYADPVSAQHAK FSKFGTVLKIITFTKNNQFQALLQYADPVS ALLQYADPVSAQHAKLSLDGQNIYNACCTL K N N A K L 4 0 2 1 0 4 0 0 1 0 2 1 0 1 1 1 0 0 1 1 0 0 20 0 2242.1131 A6NLN1;A0A0U1RRM4;P26599;K7EK45;Q59H49;A0A087WU68;K7EKJ7 A6NLN1 189 208 PTBP1 Polypyrimidine tract-binding protein 1 yes no 3 3.2321E-25 159.95 4 0.39139 0.48646 12.487 4 Median 0.39139 0.48646 12.487 4 0 Median NaN NaN NaN 0 0 Median 83627000 60086000 23542000 83627000 60086000 23542000 0 0 0 8982 489 9234 32515;32516;32517;32518 48993;48994;48995;48996;48997;48998;48999;49000 48995 8 NNQGQLIAEPFYHLPSK SNPFYQLYDTVRSCRNNQGQLIAEPFYHLP QGQLIAEPFYHLPSKKKYPDYYQQIKMPIS R N N S K K 1 0 2 0 0 2 1 1 1 1 2 1 0 1 2 1 0 0 1 0 0 0 17 0 1954.9901 Q86U86;E7EVG2;H0Y5B5 Q86U86 398 414 PBRM1 Protein polybromo-1 yes no 3 0.0060266 64.454 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1309800 1309800 0 1309800 1309800 0 0 0 0 8983 1620 9235 32519 49001 49001 1 NNREQVEVVEFHSNK GPEILAAAVPPSSLKNNREQVEVVEFHSNK NNREQVEVVEFHSNKKRKLTPDHNKNTKQA K N N N K K 0 1 3 0 0 1 3 0 1 0 0 1 0 1 0 1 0 0 0 3 0 0 15 1 1827.8864 Q5TBH9;Q8NDD1;Q5TBI2;B4E0F7 Q5TBH9 123 137 C1orf131 Uncharacterized protein C1orf131 yes no 3 1.781E-05 102.29 3 1.1667 1.4935 17.957 3 Plateau 1.1667 1.4935 17.957 3 0 Plateau NaN NaN NaN 0 0 Median 22525000 9065100 13460000 22525000 9065100 13460000 0 0 0 8984 1574 9236 32520;32521;32522 49002;49003;49004 49002 3 NNSELLNNLGNFINR EGQDSAFSWTDLLLKNNSELLNNLGNFINR NNSELLNNLGNFINRAGMFVSKFFGGYVPE K N N N R A 0 1 6 0 0 0 1 1 0 1 3 0 0 1 0 1 0 0 0 0 0 0 15 0 1730.87 A8K492;P56192;B4DF61 A8K492 642 656 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 1.6292E-87 261.35 4 0.50936 0.69463 0.52548 2 Median 0.50936 0.69463 0.52548 2 0 Median NaN NaN NaN 0 0 Median 34511000 30354000 4157300 34511000 30354000 4157300 0 0 0 8985 602 9237 32523;32524;32525;32526 49005;49006;49007;49008;49009 49007 5 NNSGDILDIPSSQNSSSLNALTHSSR ______________________________ SQNSSSLNALTHSSRLKLHLKSDMSECEND R N N S R L 1 1 4 2 0 1 0 1 1 2 3 0 0 0 1 8 1 0 0 0 0 0 26 0 2713.2903 Q15058 Q15058 10 35 KIF14 Kinesin-like protein KIF14 yes yes 3 1.6654E-16 114.64 3 0.69883 0.96989 1.0027 3 Median 0.69883 0.96989 1.0027 3 0 Median NaN NaN NaN 0 0 Median 18054000 11786000 6268200 18054000 11786000 6268200 0 0 0 8986 1504 9238 32527;32528;32529 49010;49011;49012 49010 3 NNSGEEFDCAFR EKMKVINTGIKVWCRNNSGEEFDCAFRLAQ WCRNNSGEEFDCAFRLAQEGIYTLYPFINS R N N F R L 1 1 2 1 1 0 2 1 0 0 0 0 0 2 0 1 0 0 0 0 0 0 12 0 1444.5677 Q08J23 Q08J23 591 602 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 3.5795E-12 163.64 4 0.22902 0.3157 15.903 2 Median 0.22902 0.3157 15.903 2 0 Median NaN NaN NaN 0 0 Median 31000000 28305000 2695800 31000000 28305000 2695800 0 0 0 8987 1451 9239 32530;32531;32532;32533 49013;49014;49015;49016;49017;49018;49019 49017 7 NNSVILADEMGLGK YQLEGLNWLAHSWCKNNSVILADEMGLGKT KNNSVILADEMGLGKTIQTISFLSYLFHQH K N N G K T 1 0 2 1 0 0 1 2 0 1 2 1 1 0 0 1 0 0 0 1 0 0 14 0 1459.7341 A0A024RC75;O14647;A0A1B0GTU9;A8K9Y5 A0A024RC75 502 515 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 2 0.0014189 46.378 1 0.61007 0.89983 NaN 1 Median NaN NaN NaN 0 0 Median 0.61007 0.89983 NaN 1 0 Median 5905000 3614800 2290200 0 0 0 5905000 3614800 2290200 8988 289 9240 32534 49020 49020 114 1 NNTQVLINCR EFNTGPLSVLTQSVKNNTQVLINCRNNKKL TQSVKNNTQVLINCRNNKKLLGRVKAFDRH K N N C R N 0 1 3 0 1 1 0 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1230.6139 P62316;K7ERG4 P62316 38 47 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 2 3.3506E-11 163.15 3 2 0.63257 0.92404 28.434 5 Median 0.84515 1.1293 39.841 3 0 Median 0.6186 0.87808 7.215 2 0 Median 51283000 29926000 21357000 38962000 22197000 16765000 12320000 7728600 4591600 8989 1408 9241 32535;32536;32537;32538;32539 49021;49022;49023;49024;49025;49026;49027 49024 7 NNVNVASLTQSEIR EVQLKDLILADYGKKNNVNVASLTQSEIRD KNNVNVASLTQSEIRDIILGMEISAPSQQR K N N I R D 1 1 3 0 0 1 1 0 0 1 1 0 0 0 0 2 1 0 0 2 0 0 14 0 1543.7954 Q6P2Q9;B4DK16;Q53GM6 Q6P2Q9 1995 2008 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 1.0498E-32 194.48 4 1 0.60025 0.81906 39.779 4 Median 0.57231 0.78445 16.828 3 0 Median 1.069 1.5732 NaN 1 0 Median 39934000 19042000 20893000 26166000 13659000 12507000 13768000 5382100 8386000 8990 1592 9242 32540;32541;32542;32543;32544 49028;49029;49030;49031;49032;49033;49034;49035;49036;49037 49031 10 NNVSSVSTTGTATDLESSAK LRIMSPMRTGNTYSRNNVSSVSTTGTATDL VSTTGTATDLESSAKVVDHVLGPLNSSTSL R N N A K V 2 0 2 1 0 0 1 1 0 0 1 1 0 0 0 5 4 0 0 2 0 0 20 0 1967.9284 Q03164 Q03164 2222 2241 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 2.8439E-62 207.31 4 2 1.1175 1.5426 17.165 6 Median 1.136 1.4466 18.648 4 0 Median 1.0895 1.6497 4.551 2 0 Median 52259000 25479000 26780000 22344000 10307000 12036000 29915000 15172000 14744000 8991 1438 9243 32545;32546;32547;32548;32549;32550 49038;49039;49040;49041;49042;49043;49044;49045;49046;49047;49048;49049;49050 49040 13 NPAPPIDAVEQILPTLVR LRNLTWTLSNLCRNKNPAPPIDAVEQILPT PPIDAVEQILPTLVRLLHHDDPEVLADTCW K N P V R L 2 1 1 1 0 1 1 0 0 2 2 0 0 0 4 0 1 0 0 2 0 0 18 0 1942.0888 Q7Z726;A8K7D9;P52292 Q7Z726 241 258 KPNA2 Importin subunit alpha;Importin subunit alpha-1 yes no 2 0.0018072 75.911 1 0.45919 0.6256 NaN 1 Median 0.45919 0.6256 NaN 1 0 Median NaN NaN NaN 0 0 Median 32965000 22655000 10310000 32965000 22655000 10310000 0 0 0 8992 633 9244 32551 49051 49051 1 NPDDITNEEYGEFYK IDQEELNKTKPIWTRNPDDITNEEYGEFYK NPDDITNEEYGEFYKSLTNDWEDHLAVKHF R N P Y K S 0 0 2 2 0 0 3 1 0 1 0 1 0 1 1 0 1 0 2 0 0 0 15 0 1832.7741 K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322 K9JA46 300 314 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 2 4.1687E-75 257.54 4 1 0.35744 0.44829 117.69 5 Median 0.3422 0.43164 13.466 4 0 Median 3.8575 5.8494 NaN 1 0 Median 49105000 32001000 17104000 39560000 29811000 9748700 9545100 2189600 7355500 8993 1155 9245 32552;32553;32554;32555;32556 49052;49053;49054;49055;49056;49057;49058 49053 7 NPDDITQEEYGEFYK IDQEELNKTKPIWTRNPDDITQEEYGEFYK NPDDITQEEYGEFYKSLTNDWEDHLAVKHF R N P Y K S 0 0 1 2 0 1 3 1 0 1 0 1 0 1 1 0 1 0 2 0 0 0 15 0 1846.7897 A0A024RD80;P08238;B4DMA2;B4DGL0;Q6PK50 A0A024RD80 292 306 HSP90AB1 Heat shock protein HSP 90-beta yes no 2 2.1912E-74 253.79 5 2 0.46254 0.59227 132.51 6 Median 0.46055 0.58481 1.4702 4 0 Median 4.8186 7.6259 0.25938 2 0 Median 472460000 216640000 255820000 263510000 181010000 82498000 208950000 35632000 173320000 8994 312 9246 32557;32558;32559;32560;32561;32562;32563 49059;49060;49061;49062;49063;49064;49065;49066;49067;49068;49069;49070;49071 49059 13 NPDEFYYK KQEYLKALRKKALEKNPDEFYYKMTRVKLQ RKKALEKNPDEFYYKMTRVKLQDGVHIIKE K N P Y K M 0 0 1 1 0 0 1 0 0 0 0 1 0 1 1 0 0 0 2 0 0 0 8 0 1074.4658 Q9Y3A2 Q9Y3A2 62 69 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 2 0.0095821 101.6 4 1 0.91284 1.1477 9.5346 4 Median 0.91284 1.1477 9.5346 4 0 Median NaN NaN NaN 0 0 Median 64227000 33280000 30947000 61557000 30610000 30947000 2670000 2670000 0 8995 1814 9247 32564;32565;32566;32567;32568 49072;49073;49074;49075;49076;49077 49075 6 NPDEVSYAGDNFVR KTRAMRENPYANAGKNPDEVSYAGDNFVRY KNPDEVSYAGDNFVRYTGDTISTAQTQLFA K N P V R Y 1 1 2 2 0 0 1 1 0 0 0 0 0 1 1 1 0 0 1 2 0 0 14 0 1581.7059 B2RBA0;O95391 B2RBA0 303 316 SLU7 Pre-mRNA-splicing factor SLU7 yes no 2 0.0025866 86.911 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1145800 1145800 0 1145800 1145800 0 0 0 0 8996 728 9248 32569;32570 49078;49079 49079 2 NPDILVGENDLTALSYLHEPAVLHNLR EYHLDPKTKELPHLRNPDILVGENDLTALS ALSYLHEPAVLHNLRVRFIDSKLIYTYCGI R N P L R V 2 1 3 2 0 0 2 1 2 1 6 0 0 0 2 1 1 0 1 2 0 0 27 0 3012.5669 A8CDT9;A0A087WY00;G3V394;F8WE88;F8W6H6;Q9Y4I1;Q9NQX4;H0YM96;B4DVH2;H0YMK3 A8CDT9 64 90 MYO5A;MYO5C Unconventional myosin-Va;Unconventional myosin-Vc yes no 4 3.6462E-08 86.039 2 0.63628 0.87192 14.778 2 Median 0.63628 0.87192 14.778 2 0 Median NaN NaN NaN 0 0 Median 10749000 6341500 4407200 10749000 6341500 4407200 0 0 0 8997 361 9249 32571;32572 49080;49081;49082 49081 3 NPDQVYLADYGLSYR VHGDVKAANLLLGYKNPDQVYLADYGLSYR NPDQVYLADYGLSYRYCPNGNHKQYQENPR K N P Y R Y 1 1 1 2 0 1 0 1 0 0 2 0 0 0 1 1 0 0 3 1 0 0 15 0 1772.837 A8K9L2;Q05CR6;Q86Y07;B7Z2X1 A8K9L2 178 192 VRK2 Serine/threonine-protein kinase VRK2 yes no 2 0.0098683 45.257 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2161100 2161100 0 2161100 2161100 0 0 0 0 8998 649 9250 32573 49083 49083 1 NPDQVYLVDYGLAYR VHGDIKASNLLLNYKNPDQVYLVDYGLAYR NPDQVYLVDYGLAYRYCPEGVHKEYKEDPK K N P Y R Y 1 1 1 2 0 1 0 1 0 0 2 0 0 0 1 0 0 0 3 2 0 0 15 0 1784.8733 A8K245;Q99986;H0YJ50 A8K245 189 203 VRK1 Serine/threonine-protein kinase VRK1 yes no 2 2.6572E-27 165.7 2 2 0.54603 0.83249 32.966 3 Median 1.0614 1.408 NaN 1 0 Median 0.52283 0.79902 5.8026 2 0 Median 48958000 30258000 18700000 10616000 4931300 5684400 38342000 25327000 13016000 8999 582 9251 32574;32575;32576;32577 49084;49085;49086;49087;49088;49089;49090 49086 7 NPDSITNQIALLEAR EEISVLSPEDLEAIKNPDSITNQIALLEAR NPDSITNQIALLEARCHEMKPNLGAIAEYK K N P A R C 2 1 2 1 0 1 1 0 0 2 2 0 0 0 1 1 1 0 0 0 0 0 15 0 1653.8686 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1068 1082 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 2.9249E-122 306.07 5 2 0.66985 0.9487 5.8254 6 Median 0.67528 0.93218 2.4413 4 0 Median 0.62568 1.0364 0.74189 2 0 Median 1083300000 643810000 439440000 538050000 318530000 219520000 545210000 325290000 219920000 9000 1760 9252 32578;32579;32580;32581;32582;32583;32584 49091;49092;49093;49094;49095;49096;49097;49098;49099;49100;49101;49102;49103 49100 13 NPDSQYGELIEK YTHLSAGELLRDERKNPDSQYGELIEKYIK ERKNPDSQYGELIEKYIKEGKIVPVEITIS K N P E K Y 0 0 1 1 0 1 2 1 0 1 1 1 0 0 1 1 0 0 1 0 0 0 12 0 1391.6569 Q5T0D2;B4DDL4;B2R6S5;P30085;B4DFW6 Q5T0D2 76 87 CMPK1;CMPK UMP-CMP kinase yes no 2 0.045327 40.039 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4820400 0 4820400 0 0 0 4820400 0 4820400 9001 700 9253 32585 49104 49104 1 NPDTQWITK FEVILIDPFHKAIRRNPDTQWITKPVHKHR HKAIRRNPDTQWITKPVHKHREMRGLTSAG R N P T K P 0 0 1 1 0 1 0 0 0 1 0 1 0 0 1 0 2 1 0 0 0 0 9 0 1101.5455 A0A024R2Q4;P61313;E7EQV9;E7ENU7 A0A024R2Q4 145 153 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 2 0.0042648 76.1 2 0.67139 1.0133 0.80584 2 Median NaN NaN NaN 0 0 Median 0.67139 1.0133 0.80584 2 0 Median 35680000 20612000 15067000 0 0 0 35680000 20612000 15067000 9002 92 9254 32586;32587 49105;49106;49107 49107 3 NPELPNAAQAQK EILFYRKTIGYKVPRNPELPNAAQAQKEEQ VPRNPELPNAAQAQKEEQLKIDEAESLNDE R N P Q K E 3 0 2 0 0 2 1 0 0 0 1 1 0 0 2 0 0 0 0 0 0 0 12 0 1279.6521 O60264;B7ZAX9;B4DZC0 O60264 803 814 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 1.2122E-19 188.04 4 2 2.2456 2.9939 11.523 6 Median 2.2746 2.889 5.8032 4 0 Median 2.2136 3.5245 1.1935 2 0 Median 376100000 122030000 254080000 224870000 71538000 153330000 151230000 50487000 100750000 9003 1189 9255 32588;32589;32590;32591;32592;32593 49108;49109;49110;49111;49112;49113;49114;49115;49116;49117;49118;49119 49110 12 NPELPNAAQAQKEEQLK EILFYRKTIGYKVPRNPELPNAAQAQKEEQ ELPNAAQAQKEEQLKIDEAESLNDEELEEK R N P L K I 3 0 2 0 0 3 3 0 0 0 2 2 0 0 2 0 0 0 0 0 0 0 17 1 1906.9749 O60264;B7ZAX9;B4DZC0 O60264 803 819 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 3 1.713E-13 117.2 3 2 1.9099 2.8888 4.6264 3 Median 2.1862 2.6707 NaN 1 0 Median 1.8916 2.8934 0.22586 2 0 Median 37479000 8026000 29453000 25860000 4168800 21691000 11619000 3857200 7762100 9004 1189 9256 32594;32595;32596;32597;32598 49120;49121;49122;49123;49124;49125;49126 49122 7 NPELSTQLIDIIHTAAAR WLAGLPLQLAHLGSRNPELSTQLIDIIHTA LSTQLIDIIHTAAARANKELLKSLQATALR R N P A R A 3 1 1 1 0 1 1 0 1 3 2 0 0 0 1 1 2 0 0 0 0 0 18 0 1962.0534 A0A024R169;Q9NXF1;B4DQR0 A0A024R169 566 583 TEX10 Testis-expressed sequence 10 protein yes no 3 0.0053364 28.083 1 0.37206 0.50243 NaN 1 Median 0.37206 0.50243 NaN 1 0 Median NaN NaN NaN 0 0 Median 3712900 2728300 984610 3712900 2728300 984610 0 0 0 9005 53 9257 32599 49127 49127 1 NPEQVDLYQFMAK SITANYTDQWERWWKNPEQVDLYQFMAKDN WKNPEQVDLYQFMAKDNVPFHSLVFPCSAL K N P A K D 1 0 1 1 0 2 1 0 0 0 1 1 1 1 1 0 0 0 1 1 0 0 13 0 1581.7497 A8K492;P56192;B4DF61 A8K492 542 554 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 0.020081 44.945 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2824900 0 2824900 0 0 0 2824900 0 2824900 9006 602 9258 32600 49128 49128 205 1 NPFGNAGLLLGEAGK MDKGKELSGLGSALKNPFGNAGLLLGEAGK NPFGNAGLLLGEAGKQLRRRAGLGSGLSLS K N P G K Q 2 0 2 0 0 0 1 4 0 0 3 1 0 1 1 0 0 0 0 0 0 0 15 0 1456.7674 B3KPA6;Q53HR2;B4DEA8;P49748;G3V1M7 B3KPA6 417 431 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 4.8024E-05 95.183 3 2 0.8338 1.0489 31.547 5 Median 0.81752 1.0489 0.94446 3 0 Median 1.2338 1.8437 9.3336 2 0 Median 44136000 21251000 22885000 22729000 12606000 10122000 21407000 8644200 12763000 9007 763 9259 32601;32602;32603;32604;32605 49129;49130;49131;49132;49133;49134 49132 6 NPFLAAVTTNRK RLKSYENQKPPFDAKNPFLAAVTTNRKLSQ DAKNPFLAAVTTNRKLSQGTERHLMHLELD K N P R K L 2 1 2 0 0 0 0 0 0 0 1 1 0 1 1 0 2 0 0 1 0 0 12 1 1330.7357 B2R6E5;A8K3B4;Q59ED7;H0Y4R2;P16435;Q63HL4;B4DJI8;B4E305;B4DKM8;E7EMD0;B4DDH3 B2R6E5 283 294 POR;DKFZp686G04235 NADPH--cytochrome P450 reductase yes no 2 0.00059923 73.067 1 0.43415 0.55859 NaN 1 Median 0.43415 0.55859 NaN 1 0 Median NaN NaN NaN 0 0 Median 4233900 2777000 1457000 4233900 2777000 1457000 0 0 0 9008 592 9260 32606 49135 49135 1 NPLCNLLSFTYK LQSDFAALLTGPLQRNPLCNLLSFTYKLDP LQRNPLCNLLSFTYKLDPGGQSFPFCARLL R N P Y K L 0 0 2 0 1 0 0 0 0 0 3 1 0 1 1 1 1 0 1 0 0 0 12 0 1468.7384 Q9BU64 Q9BU64 212 223 CENPO Centromere protein O yes yes 2 0.00084558 82.171 3 0.55419 0.7254 3.1487 2 Median 0.55419 0.7254 3.1487 2 0 Median NaN NaN NaN 0 0 Median 6900400 5033400 1867100 6900400 5033400 1867100 0 0 0 9009 1714 9261 32607;32608;32609 49136;49137;49138 49138 3 NPLIINSIIDK GGLMFNTGIGQHILKNPLIINSIIDKAALR HILKNPLIINSIIDKAALRPTDVVLEVGPG K N P D K A 0 0 2 1 0 0 0 0 0 4 1 1 0 0 1 1 0 0 0 0 0 0 11 0 1238.7234 A8K9K8;Q9UNQ2;A0A0C4DGB1;B4DRY2;D6RCL3 A8K9K8 41 51 DIMT1 Probable dimethyladenosine transferase yes no 2 0.0064795 74.944 1 2 0.54274 0.70521 NaN 1 Median 0.54274 0.70521 NaN 1 0 Median NaN NaN NaN 0 0 Median 13530000 11883000 1647200 4910000 3262700 1647200 8620200 8620200 0 9010 648 9262 32610;32611;32612 49139;49140;49141 49140 3 NPLLDLTALEDKPLDEGYGISSVPSASNSK IDEKGLKTMVSLGVKNPLLDLTALEDKPLD EGYGISSVPSASNSKSIKENSNAAIIKRFN K N P S K S 2 0 2 3 0 0 2 2 0 1 5 2 0 0 3 5 1 0 1 1 0 0 30 1 3129.5718 E9PI26;B4DSG6;B2R7G4;P32780 E9PI26 60 89 GTF2H1 General transcription factor IIH subunit 1 yes no 3 3.7887E-12 92.225 2 0.49207 0.58341 9.0872 2 Median 0.49207 0.58341 9.0872 2 0 Median NaN NaN NaN 0 0 Median 5668400 4095100 1573300 5668400 4095100 1573300 0 0 0 9011 706 9263 32613;32614 49142;49143;49144;49145;49146 49142 5 NPLVAVYYTNR KYPEAAACYGRAITRNPLVAVYYTNRALCY AITRNPLVAVYYTNRALCYLKMQQHEQALA R N P N R A 1 1 2 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 2 2 0 0 11 0 1308.6826 Q9UNE7 Q9UNE7 56 66 STUB1 E3 ubiquitin-protein ligase CHIP yes yes 2 0.039458 46.462 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9012 1796 9264 32615 49147 49147 1 NPNGPYPYTLK DALETLGFLNHYQMKNPNGPYPYTLKLCFS YQMKNPNGPYPYTLKLCFSTAQHAS_____ K N P L K L 0 0 2 0 0 0 0 1 0 0 1 1 0 0 3 0 1 0 2 0 0 0 11 0 1262.6295 B2R959;Q6NTA2;P14866;M0QXS5 B2R959 538 548 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 2 5.7318E-06 107.21 2 0.51142 0.64661 1.2618 2 Median 0.51142 0.64661 1.2618 2 0 Median NaN NaN NaN 0 0 Median 17073000 11693000 5380300 17073000 11693000 5380300 0 0 0 9013 719 9265 32616;32617 49148;49149;49150 49149 3 NPNYDL LPVTPILEGFVILRKNPNYDL_________ LEGFVILRKNPNYDL_______________ K N P D L - 0 0 2 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 6 0 734.32352 Q59EG8;Q13200;B4DM22 Q59EG8 908 913 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 1 0.024369 99.919 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2904700 0 0 2904700 0 0 0 0 0 9014 1465 9266 32618 49151 49151 1 NPPGFAFVEFEDPR AFSYYGPLRTVWIARNPPGFAFVEFEDPRD RNPPGFAFVEFEDPRDAEDAVRGLDGKVIC R N P P R D 1 1 1 1 0 0 2 1 0 0 0 0 0 3 3 0 0 0 0 1 0 0 14 0 1620.7573 A0A0B4J1Z1;B4DEK2;C9JAB2;Q16629;B2R6F3;P84103;A0A087X2D0 A0A0B4J1Z1 45 58 SRSF7;SFRS3;SRSF3 Serine/arginine-rich splicing factor 7;Serine/arginine-rich splicing factor 3 no no 2 2.5728E-22 145.28 3 2 0.45698 0.60995 49.439 4 Median 0.39852 0.53295 16.125 3 0 Median 0.96903 1.5034 NaN 1 0 Median 99518000 67021000 32497000 57682000 39492000 18190000 41836000 27529000 14307000 9015 414;698 9267 32619;32620;32621;32622;32623 49152;49153;49154;49155;49156;49157;49158;49159 49156 8 NPPGFAFVEFEDPRDAADAVR AFGYYGPLRSVWVARNPPGFAFVEFEDPRD FVEFEDPRDAADAVRELDGRTLCGCRVRVE R N P V R E 4 2 1 3 0 0 2 1 0 0 0 0 0 3 3 0 0 0 0 2 0 0 21 1 2319.092 B2R6F3;P84103;A0A087X2D0 B2R6F3 44 64 SFRS3;SRSF3 Serine/arginine-rich splicing factor 3 yes no 2;3 4.6319E-47 206.67 7 2 0.31351 0.43014 54.644 9 Median 0.31095 0.42545 23.027 7 0 Median 0.77832 1.252 2.9571 2 0 Median 872850000 627080000 245770000 699500000 533880000 165620000 173350000 93198000 80150000 9016 698 9268 32624;32625;32626;32627;32628;32629;32630;32631;32632 49160;49161;49162;49163;49164;49165;49166;49167;49168;49169;49170;49171;49172;49173 49165 14 NPPGFAFVEFEDPRDAEDAVR AFSYYGPLRTVWIARNPPGFAFVEFEDPRD FVEFEDPRDAEDAVRGLDGKVICGSRVRVE R N P V R G 3 2 1 3 0 0 3 1 0 0 0 0 0 3 3 0 0 0 0 2 0 0 21 1 2377.0975 A0A0B4J1Z1;B4DEK2;C9JAB2;Q16629 A0A0B4J1Z1 45 65 SRSF7 Serine/arginine-rich splicing factor 7 yes no 2;3 1.0417E-11 83.877 4 2 0.46339 0.63378 40.371 5 Median 0.45734 0.63248 1.2544 3 0 Median 0.80263 1.3124 3.6773 2 0 Median 806180000 526620000 279560000 561670000 391230000 170450000 244510000 135390000 109120000 9017 414 9269 32633;32634;32635;32636;32637;32638 49174;49175;49176;49177;49178;49179;49180;49181;49182;49183;49184;49185;49186 49181 13 NPPNQSSNERPPSLLVIETK RGKIYKPSSRFADQKNPPNQSSNERPPSLL SSNERPPSLLVIETKKPPLKKGEKEKKKSN K N P T K K 0 1 3 0 0 1 2 0 0 1 2 1 0 0 4 3 1 0 0 1 0 0 20 1 2219.1546 O15042;E7ET15;B4DK81;E7EW00;H0Y8D9 O15042 169 188 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 3 0.000625 80.316 3 0.73168 0.95194 26.75 3 Median 0.73168 0.95194 26.75 3 0 Median NaN NaN NaN 0 0 Median 17597000 8595400 9002100 17597000 8595400 9002100 0 0 0 9018 1175 9270 32639;32640;32641 49187;49188;49189 49189 2 NPQNSTVLAR QAKQRSPSKVKPPVRNPQNSTVLARGPASV KPPVRNPQNSTVLARGPASVPSVGKAVATA R N P A R G 1 1 2 0 0 1 0 0 0 0 1 0 0 0 1 1 1 0 0 1 0 0 10 0 1098.5782 E7ETY2;B4DRA2;J3KQ96;Q13428;Q59FZ2 E7ETY2 833 842 TCOF1 Treacle protein no no 2 4.6588E-08 131.06 2 2 0.88816 1.198 19.927 4 Median 0.77581 1.032 3.799 2 0 Median 0.99255 1.4385 8.5842 2 0 Median 46515000 24774000 21741000 20831000 11845000 8985400 25685000 12929000 12756000 9019 1016;1135;1469 9271 32642;32643;32644;32645 49190;49191;49192;49193;49194;49195;49196 49192 7 NPQSYLYLVK EGGEEETLRRLGLERNPQSYLYLVKGQCAK LGLERNPQSYLYLVKGQCAKVSSINDKSDW R N P V K G 0 0 1 0 0 1 0 0 0 0 2 1 0 0 1 1 0 0 2 1 0 0 10 0 1223.655 F5H6E2;B7Z3E5;O00159;D3DTH7;B7Z9C0;I3L204 F5H6E2 236 245 MYO1C Unconventional myosin-Ic yes no 2 0.00010187 132.76 1 1 0.56869 0.73593 NaN 1 Median 0.56869 0.73593 NaN 1 0 Median NaN NaN NaN 0 0 Median 9546700 4746900 4799800 7900400 4746900 3153500 1646300 0 1646300 9020 905 9272 32646;32647 49197;49198 49197 2 NPQVPSDGGVR QANCQGLSPVSVASKNPQVPSDGGVRLNKS VASKNPQVPSDGGVRLNKSKTDLLVNDNPD K N P V R L 0 1 1 1 0 1 0 2 0 0 0 0 0 0 2 1 0 0 0 2 0 0 11 0 1124.5574 H0YC29;E5RJ97;E5RFF3;Q9UHF7 H0YC29 190 200 TRPS1 Zinc finger transcription factor Trps1 yes no 2 0.041328 46.158 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9021 1004 9273 32648 49199 49199 1 NPSIAVPIVLK IYADKAADIIDGLRKNPSIAVPIVLKRLKM GLRKNPSIAVPIVLKRLKMKEEEWREAQRG K N P L K R 1 0 1 0 0 0 0 0 0 2 1 1 0 0 2 1 0 0 0 2 0 0 11 0 1149.7121 Q96ST3 Q96ST3 687 697 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 0.031628 47.198 2 0.66831 0.83402 0.37884 2 Median 0.66831 0.83402 0.37884 2 0 Median NaN NaN NaN 0 0 Median 7386400 4378500 3007900 7386400 4378500 3007900 0 0 0 9022 1701 9274 32649;32650 49200;49201 49201 1 NPSSPLYTTLGVITK ELKATFCLPILGVKKNPSSPLYTTLGVITK NPSSPLYTTLGVITKGTVIEVNVSELGLVT K N P T K G 0 0 1 0 0 0 0 1 0 1 2 1 0 0 2 2 3 0 1 1 0 0 15 0 1589.8665 Q5J7U2;O95478 Q5J7U2 202 216 CDK105;NSA2 Ribosome biogenesis protein NSA2 homolog yes no 2 3.5422E-10 135.81 4 1 0.72833 1.0104 14.75 4 Median 0.79199 1.0131 17.515 3 0 Median 0.66979 1.0076 NaN 1 0 Median 59171000 37856000 21315000 45786000 28979000 16807000 13384000 8876300 4508000 9023 1221 9275 32651;32652;32653;32654;32655 49202;49203;49204;49205;49206;49207 49204 6 NPSSSVPPPSAGSVK PPPQLVSTSNRAYMRNPSSSVPPPSAGSVK NPSSSVPPPSAGSVKTSTTGVATTQSPTPR R N P V K T 1 0 1 0 0 0 0 1 0 0 0 1 0 0 4 5 0 0 0 2 0 0 15 0 1409.7151 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;E9PMT2;A0A0A0MTE2 A0A1P7ZIM8 1175 1189 LMO7 LIM domain only protein 7 yes no 2 0.0067437 71.268 2 0.31799 0.4015 NaN 1 Median 0.31799 0.4015 NaN 1 0 Median NaN NaN NaN 0 0 Median 11487000 8915700 2570900 11487000 8915700 2570900 0 0 0 9024 525 9276 32656;32657 49208;49209 49209 2 NPTIVNFPITNVDLR FCIKRFTKNNFFVEKNPTIVNFPITNVDLR NPTIVNFPITNVDLREYLSEEVQAVHKNTT K N P L R E 0 1 3 1 0 0 0 0 0 2 1 0 0 1 2 0 2 0 0 2 0 0 15 0 1711.9257 B9A018;Q53GS9;B7Z7L9;A0A087X1B2;B3KPG7;B3KMG1 B9A018 467 481 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 2 1.8042E-27 179.35 4 0.68671 0.90289 2.2196 4 Linear 0.68671 0.90289 2.2196 4 0 Linear NaN NaN NaN 0 0 Median 40831000 24031000 16800000 40831000 24031000 16800000 0 0 0 9025 926 9277 32658;32659;32660;32661 49210;49211;49212;49213;49214 49211 5 NPTTPSSVIFPLVK QDSEDDDDILPNMDKNPTTPSSVIFPLVKT KNPTTPSSVIFPLVKTPQCQHVSPGMLGSI K N P V K T 0 0 1 0 0 0 0 0 0 1 1 1 0 1 3 2 2 0 0 2 0 0 14 0 1498.8395 Q6P0N0 Q6P0N0 1021 1034 MIS18BP1 Mis18-binding protein 1 yes yes 2 2.3878E-05 84.352 4 2 0.67039 0.89167 11.765 6 Median 0.70905 0.89167 6.8476 4 0 Median 0.56169 0.87946 23.482 2 0 Median 93434000 55007000 38427000 32033000 18474000 13559000 61401000 36533000 24868000 9026 1588 9278 32662;32663;32664;32665;32666;32667 49215;49216;49217;49218;49219;49220;49221;49222 49217 8 NPVAPAPDPR GLISENLPLLTEKEKNPVAPAPDPRLPPQS TEKEKNPVAPAPDPRLPPQSCLLLPPTPVR K N P P R L 2 1 1 1 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 1 0 0 10 0 1032.5352 O75691 O75691 2043 2052 UTP20 Small subunit processome component 20 homolog yes yes 2 0.0041526 65.224 1 1 0.97085 1.2996 NaN 1 Median 0.97085 1.2996 NaN 1 0 Median NaN NaN NaN 0 0 Median 23770000 9113700 14657000 17375000 9113700 8261100 6395500 0 6395500 9027 1207 9279 32668;32669 49223;49224 49223 2 NPVHCFDLASLDPR ADFGCGDCRLASSIRNPVHCFDLASLDPRV RNPVHCFDLASLDPRVTVCDMAQVPLEDES R N P P R V 1 1 1 2 1 0 0 0 1 0 2 0 0 1 2 1 0 0 0 1 0 0 14 0 1639.7777 O43159 O43159 328 341 RRP8 Ribosomal RNA-processing protein 8 yes yes 3 0.0047116 22.857 1 0.67363 0.889 NaN 1 Median 0.67363 0.889 NaN 1 0 Median NaN NaN NaN 0 0 Median 8903300 5333300 3569900 8903300 5333300 3569900 0 0 0 9028 1181 9280 32670 49225 49225 1 NPVLVR LKAKKPKKGKPHCSRNPVLVRGVGRYSRSA KKGKPHCSRNPVLVRGVGRYSRSAMYSRKA R N P V R G 0 1 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 2 0 0 6 0 696.42826 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;F8VZ45;U3KQR5;F8VZA3;F8VWR1;F8VU16;B4DNY8 Q8TBK5 47 52 RPL6 60S ribosomal protein L6 yes no 2 0.035481 92.075 1 1 0.63285 0.94774 16.046 2 Median 0.76515 1.0616 NaN 1 0 Median 0.52342 0.84608 NaN 1 0 Median 417890000 253650000 164240000 311290000 183760000 127530000 106600000 69891000 36712000 9029 277 9281 32671;32672 49226;49227 49226 2 NQAETIALEK KALKEKIREYEQTLKNQAETIALEKEQKLQ EQTLKNQAETIALEKEQKLQNDFAEKERKL K N Q E K E 2 0 1 0 0 1 2 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 10 0 1115.5823 P39880;Q13948;A0A097ZMP4;A0A097ZMP6 P39880 155 164 CUX1;CUX1-RETc;CUX1-RETa Homeobox protein cut-like 1;Protein CASP yes no 2 0.013129 56.013 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9030 1331 9282 32673 49228 49228 1 NQALFPACVLK GKDLGLAFEIPPHMKNQALFPACVLKNAEL PHMKNQALFPACVLKNAELKFNFGEEEFKF K N Q L K N 2 0 1 0 1 1 0 0 0 0 2 1 0 1 1 0 0 0 0 1 0 0 11 0 1259.6696 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 143 153 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.0025079 80.165 2 0.76509 0.95047 4.3319 2 Median 0.76509 0.95047 4.3319 2 0 Median NaN NaN NaN 0 0 Median 35761000 19289000 16472000 35761000 19289000 16472000 0 0 0 9031 378 9283 32674;32675 49229;49230;49231;49232 49231 4 NQALNIAWQK KSKILTTIEDLDQKKNQALNIAWQKVNKDF LDQKKNQALNIAWQKVNKDFGSIFSTLLPG K N Q Q K V 2 0 2 0 0 2 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 10 0 1184.6302 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27;A0A0C4DGE5 A0A024R158 1027 1036 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 1.8523E-05 133.68 2 0.55869 0.88993 1.5121 2 Median NaN NaN NaN 0 0 Median 0.55869 0.88993 1.5121 2 0 Median 75111000 47382000 27730000 0 0 0 75111000 47382000 27730000 9032 50 9284 32676;32677 49233;49234 49234 2 NQALNTDNYGHDLASVQALQR FHRDADETKEWIEEKNQALNTDNYGHDLAS DNYGHDLASVQALQRKHEGFERDLAALGDK K N Q Q R K 3 1 3 2 0 3 0 1 1 0 3 0 0 0 0 1 1 0 1 1 0 0 21 0 2327.1254 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16 Q13813 1253 1273 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 3 3.4284E-38 145.71 4 1 0.74686 1.0039 53.48 5 Median 0.72321 0.98093 6.6199 4 0 Median 2.5081 3.2215 NaN 1 0 Median 152910000 87516000 65398000 147970000 85561000 62406000 4946500 1955500 2991100 9033 1476 9285 32678;32679;32680;32681;32682 49235;49236;49237;49238;49239;49240;49241;49242;49243;49244 49240 10 NQDATVYVGGLDEK ______________________________ RNQDATVYVGGLDEKVSEPLLWELFLQAGP R N Q E K V 1 0 1 2 0 1 1 2 0 0 1 1 0 0 0 0 1 0 1 2 0 0 14 0 1507.7155 Q53FG6;B3KUJ0;Q15427 Q53FG6 10 23 SF3B4 Splicing factor 3B subunit 4 yes no 2 1.6673E-09 118.77 4 0.69111 0.86684 11.49 2 Median 0.69111 0.86684 11.49 2 0 Median NaN NaN NaN 0 0 Median 17491000 12130000 5361100 17491000 12130000 5361100 0 0 0 9034 781 9286 32683;32684;32685;32686 49245;49246;49247;49248 49247 4 NQDEESQEAPELLK TKEALTRKQQKCRRKNQDEESQEAPELLKR KNQDEESQEAPELLKRPKEYTVRFTFPDPP K N Q L K R 1 0 1 1 0 2 4 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 14 0 1628.753 Q8NE71;Q2L6I2;Q59F96;H0YGW7 Q8NE71 590 603 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 1.5145E-73 250.51 4 2 0.62192 0.7997 12.789 6 Median 0.61449 0.77038 4.0917 4 0 Median 0.64586 0.97842 4.8278 2 0 Median 132910000 74695000 58215000 91794000 53869000 37925000 41116000 20826000 20290000 9035 1653 9287 32687;32688;32689;32690;32691;32692 49249;49250;49251;49252;49253;49254;49255;49256;49257;49258 49251 10 NQDEQEIPFR GLRSKEKKKVNCKPKNQDEQEIPFRLREIM NCKPKNQDEQEIPFRLREIMRSRQEMKNPI K N Q F R L 0 1 1 1 0 2 2 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 10 0 1274.5891 I3L0U5;H6QX63;Q6PK04 I3L0U5 57 66 CCDC137 Coiled-coil domain-containing protein 137 yes no 2 4.8347E-05 99.688 4 2 1.0087 1.3511 12.996 5 Median 1.04 1.3686 2.8064 3 0 Plateau 0.78335 1.1094 9.0865 2 0 Median 66417000 32997000 33420000 44233000 20862000 23371000 22184000 12135000 10049000 9036 1112 9288 32693;32694;32695;32696;32697;32698 49259;49260;49261;49262;49263;49264;49265 49262 7 NQGDEEGTEIDTLQFR GLIPIHADPRLFEYRNQGDEEGTEIDTLQF QGDEEGTEIDTLQFRLQVRCTRNPHAAKDS R N Q F R L 0 1 1 2 0 2 3 2 0 1 1 0 0 1 0 0 2 0 0 0 0 0 16 0 1850.8282 Q96HT3;O15160;D6RDJ3;E7EQB9 Q96HT3 118 133 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 2 1.0506E-16 150.49 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4117400 4117400 0 4117400 4117400 0 0 0 0 9037 1178 9289 32699;32700 49266;49267 49266 2 NQGGGLSSSGAGEGQGPK KPQKQNDGQRKDPSKNQGGGLSSSGAGEGQ GGLSSSGAGEGQGPKKQTRLGLEAKKEENL K N Q P K K 1 0 1 0 0 2 1 7 0 0 1 1 0 0 1 3 0 0 0 0 0 0 18 0 1586.7285 P07814 P07814 992 1009 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2 1.7493E-08 72.958 1 0.66974 0.84785 NaN 1 Median 0.66974 0.84785 NaN 1 0 Median NaN NaN NaN 0 0 Median 2700600 1654700 1046000 2700600 1654700 1046000 0 0 0 9038 1242 9290 32701 49268;49269 49269 2 NQGSELSGVISSACDK TSKSNPGNNMACISKNQGSELSGVISSACD QGSELSGVISSACDKESNMERRVITISRSE K N Q D K E 1 0 1 1 1 1 1 2 0 1 1 1 0 0 0 4 0 0 0 1 0 0 16 0 1650.7519 B4DYG2;O43683;A0JLU2;A8K5A6 B4DYG2 168 183 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 yes no 2 9.057E-23 171.99 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12098000 12098000 0 8873800 8873800 0 3224000 3224000 0 9039 873 9291 32702;32703;32704;32705 49270;49271;49272;49273;49274 49270 5 NQHFEVPFIAFYR PSTIQKIKEALGFMRNQHFEVPFIAFYRKE MRNQHFEVPFIAFYRKEYVEPELHINDLWR R N Q Y R K 1 1 1 0 0 1 1 0 1 1 0 0 0 3 1 0 0 0 1 1 0 0 13 0 1666.8256 Q7KZ85 Q7KZ85 368 380 SUPT6H Transcription elongation factor SPT6 yes yes 3 0.00064225 59.185 2 1 0.58415 0.81814 NaN 1 Median 0.58415 0.81814 NaN 1 0 Median NaN NaN NaN 0 0 Median 8816700 6374400 2442300 7585800 6374400 1211400 1230900 0 1230900 9040 1609 9292 32706;32707;32708 49275;49276;49277 49276 3 NQIALWDQLLEGR SVKVSEEVEKGRAVKNQIALWDQLLEGRIK VKNQIALWDQLLEGRIKLQKALLTTNQLPQ K N Q G R I 1 1 1 1 0 2 1 1 0 1 3 0 0 0 0 0 0 1 0 0 0 0 13 0 1554.8154 Q9NY61 Q9NY61 229 241 AATF Protein AATF yes yes 2 1.9687E-16 137.89 1 2 0.70617 1.0977 16.543 3 Median 1.0387 1.3816 NaN 1 0 Median 0.69227 1.0489 6.4318 2 0 Median 37598000 22925000 14673000 2244600 1118900 1125700 35353000 21806000 13547000 9041 1767 9293 32709;32710;32711 49278;49279;49280;49281;49282;49283 49282 5 NQIIACNGSIQSIPEIPDDLK LKDLTERGLWHEEMKNQIIACNGSIQSIPE NGSIQSIPEIPDDLKQLYKTVWEISQKTVL K N Q L K Q 1 0 2 2 1 2 1 1 0 5 1 1 0 0 2 2 0 0 0 0 0 0 21 0 2324.1682 B4E0I8;B4DNN4;P23921;B4DS95;Q53GZ5;E9PL69;B4DXB0;B4DXD1 B4E0I8 560 580 RRM1 Ribonucleoside-diphosphate reductase;Ribonucleoside-diphosphate reductase large subunit yes no 2 0.00066439 68.262 2 0.38892 0.49385 28.98 2 Median 0.38892 0.49385 28.98 2 0 Median NaN NaN NaN 0 0 Median 4014800 2973100 1041700 4014800 2973100 1041700 0 0 0 9042 839 9294 32712;32713 49284;49285 49284 2 NQILNLTTDNANILLQIDNAR PRDYSKYYKTIDDLKNQILNLTTDNANILL TTDNANILLQIDNARLAADDFRLKYENEVA K N Q A R L 2 1 5 2 0 2 0 0 0 3 4 0 0 0 0 0 2 0 0 0 0 0 21 0 2366.2554 CON__P13645;P13645 CON__P13645 208 228 KRT10 Keratin, type I cytoskeletal 10 yes no 2 2.0732E-133 249.13 4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 464110000 464110000 0 276160000 276160000 0 187960000 187960000 0 + 9043 960 9295 32714;32715;32716;32717;32718;32719 49286;49287;49288;49289;49290;49291;49292 49291 7 NQIQDQEQLVSK KQKLEKKDEEISRLKNQIQDQEQLVSKLSQ RLKNQIQDQEQLVSKLSQVEGEHQLWKEQN K N Q S K L 0 0 1 1 0 4 1 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 12 0 1428.7209 P49454 P49454 2625 2636 CENPF Centromere protein F yes yes 2 0.00048019 115.23 2 1 0.8305 1.049 25.986 3 Median 0.77307 0.97493 10.349 2 0 Median 1.0826 1.5015 NaN 1 0 Median 16788000 9728600 7059000 12035000 7271500 4763600 4752500 2457200 2295400 9044 1351 9296 32720;32721;32722 49293;49294;49295;49296 49294 4 NQIVTILQDR EKCKPQLLNFPPYTRNQIVTILQDRLNQVS PPYTRNQIVTILQDRLNQVSRDQVLDNAAV R N Q D R L 0 1 1 1 0 2 0 0 0 2 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1198.667 B2R935;A0A024R1S2;Q99741 B2R935 349 358 CDC6 Cell division control protein 6 homolog yes no 2 2.2273E-05 77.662 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9045 64 9297 32723 49297 49297 1 NQLCDLETK EKLNLLHEFLQTEIKNQLCDLETKLRKEEL LQTEIKNQLCDLETKLRKEELSEEGYLAKV K N Q T K L 0 0 1 1 1 1 1 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1119.523 A0A024R7E3;P26358;Q59FP7;K7EJL0;K7EMU8 A0A024R7E3 121 129 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 0.019967 85.161 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1303800 1303800 0 1303800 1303800 0 0 0 0 9046 176 9298 32724 49298 49298 1 NQLEESEFTCAAAVK LKNSAPSKREIAQLKNQLEESEFTCAAAVK NQLEESEFTCAAAVKARKAMEVEIEDLHLQ K N Q V K A 3 0 1 0 1 1 3 0 0 0 1 1 0 1 0 1 1 0 0 1 0 0 15 0 1695.7774 A0A0D9SFK2;A0A024QZ63;Q92614;B4DYM1;B4DZ32 A0A0D9SFK2 1689 1703 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 2 9.0345E-41 206.1 3 0.64831 0.85262 19.786 2 Median 0.64831 0.85262 19.786 2 0 Median NaN NaN NaN 0 0 Median 11402000 8585800 2816700 11402000 8585800 2816700 0 0 0 9047 6 9299 32725;32726;32727 49299;49300;49301;49302;49303 49299 5 NQLELLR RKFQPLFGDFAAEKKNQLELLRVMNSKKPQ GDFAAEKKNQLELLRVMNSKKPQLDVTRAT K N Q L R V 0 1 1 0 0 1 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 7 0 884.50797 Q15050 Q15050 267 273 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 0.0045979 143.37 4 2 0.72294 1.0329 4.5821 6 Median 0.75518 1.028 5.1234 4 0 Median 0.66867 1.0385 4.82 2 0 Median 193420000 114180000 79235000 138720000 79407000 59311000 54699000 34776000 19923000 9048 1503 9300 32728;32729;32730;32731;32732;32733 49304;49305;49306;49307;49308;49309;49310;49311;49312;49313 49307 10 NQLTSNPENTVFDAK AFTPEGERLIGDAAKNQLTSNPENTVFDAK NQLTSNPENTVFDAKRLIGRTWNDPSVQQD K N Q A K R 1 0 3 1 0 1 1 0 0 0 1 1 0 1 1 1 2 0 0 1 0 0 15 0 1676.8006 V9HWB4;P11021;B4DEF7 V9HWB4 82 96 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 2 2.9725E-15 163.45 5 2 0.63296 0.86919 55.183 4 Median 0.41656 0.52738 10.779 2 0 Median 0.90654 1.3623 3.6685 2 0 Median 41643000 26931000 14712000 20040000 15846000 4194100 21603000 11085000 10518000 9049 1252 9301 32734;32735;32736;32737;32738;32739;32740 49314;49315;49316;49317;49318;49319;49320;49321;49322;49323;49324 49315 11 NQLVTPEPTSR SIVPIAPELQPSTSRNQLVTPEPTSRATRC STSRNQLVTPEPTSRATRCRTNRSSVKTPE R N Q S R A 0 1 1 0 0 1 1 0 0 0 1 0 0 0 2 1 2 0 0 1 0 0 11 0 1240.6412 Q14676;B4DYH4 Q14676 1585 1595 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 2 0.0030181 67.563 1 2 0.53997 0.759 0.9548 2 Median NaN NaN NaN 0 0 Median 0.53997 0.759 0.9548 2 0 Median 21031000 14544000 6487100 2117500 2117500 0 18914000 12427000 6487100 9050 1491 9302 32741;32742;32743 49325;49326;49327;49328;49329 49329 5 NQMLMTPTSAPR KVVRPLRTFLHTVQRNQMLMTPTSAPRSVM VQRNQMLMTPTSAPRSVMKSFIKRNTPLRM R N Q P R S 1 1 1 0 0 1 0 0 0 0 1 0 2 0 2 1 2 0 0 0 0 0 12 0 1345.6482 Q9NQS7;B3KPD3 Q9NQS7 502 513 INCENP Inner centromere protein yes no 2 0.00061148 66.595 3 0.69165 1.1151 3.5244 3 Median NaN NaN NaN 0 0 Median 0.69165 1.1151 3.5244 3 0 Median 273600000 163170000 110430000 0 0 0 273600000 163170000 110430000 9051 1752 9303 32744;32745;32746 49330;49331;49332;49333;49334 49331 801;802 5 NQNSWGTGEDVK NAGVTASPPTDLIWKNQNSWGTGEDVKVIL IWKNQNSWGTGEDVKVILKNSQGEEVAQRS K N Q V K V 0 0 2 1 0 1 1 2 0 0 0 1 0 0 0 1 1 1 0 1 0 0 12 0 1333.5899 P20700;B4DZT3 P20700 517 528 LMNB1 Lamin-B1 yes no 2 0.0021084 56.725 2 1.7597 2.4736 5.8493 2 Median NaN NaN NaN 0 0 Median 1.7597 2.4736 5.8493 2 0 Median 9731800 3564100 6167700 0 0 0 9731800 3564100 6167700 9052 1285 9304 32747;32748 49335;49336;49337;49338 49338 4 NQPTNVTLSSGFVADR ______________________________ QPTNVTLSSGFVADRGVKHHSGGEKPFQAQ R N Q D R G 1 1 2 1 0 1 0 1 0 0 1 0 0 1 1 2 2 0 0 2 0 0 16 0 1704.8431 Q96F88;Q99575;E5RK39 Q96F88 15 30 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 4.8843E-18 130.69 4 2 0.39651 0.59925 13.73 3 Median 0.39504 0.53668 15.595 2 0 Median 0.39651 0.61838 NaN 1 0 Median 78397000 54808000 23588000 37638000 30543000 7094900 40759000 24265000 16493000 9053 1685 9305 32749;32750;32751;32752;32753;32754 49339;49340;49341;49342;49343;49344;49345;49346;49347 49346 9 NQQITHANNTVSNFK ISFGSKNRTIGVAAKNQQITHANNTVSNFK NQQITHANNTVSNFKRFHGRAFNDPFIQKE K N Q F K R 1 0 4 0 0 2 0 0 1 1 0 1 0 1 0 1 2 0 0 1 0 0 15 0 1714.8387 A0A024RDQ0;A0A024RDS1;Q92598;B4DZB4;A0A0A0MSM0;R4GN69 A0A024RDQ0 54 68 HSPH1 Heat shock protein 105 kDa yes no 2 2.0234E-05 115.18 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2265600 2265600 0 2265600 2265600 0 0 0 0 9054 320 9306 32755 49348 49348 1 NQQPVLPAGLQVPK ERVGILLDEASGVNKNQQPVLPAGLQVPKT KNQQPVLPAGLQVPKTVVSSWNRKAAEYGK K N Q P K T 1 0 1 0 0 3 0 1 0 0 2 1 0 0 3 0 0 0 0 2 0 0 14 0 1487.846 Q01780;B4DKG8;B4DFE4;Q59G73 Q01780 137 150 EXOSC10 Exosome component 10 yes no 2 5.0185E-06 135.43 4 1 0.70294 0.89134 6.3121 3 Median 0.70294 0.89134 6.3121 3 0 Median NaN NaN NaN 0 0 Median 42672000 26745000 15927000 32723000 16796000 15927000 9948500 9948500 0 9055 1433 9307 32756;32757;32758;32759;32760 49349;49350;49351;49352;49353;49354;49355;49356 49349 8 NQSFASTHLNQNSSR QDAEEAWKLLKVGRKNQSFASTHLNQNSSR NQSFASTHLNQNSSRSHSIFSIRILHLQGE K N Q S R S 1 1 3 0 0 2 0 0 1 0 1 0 0 1 0 4 1 0 0 0 0 0 15 0 1689.7819 O95235 O95235 365 379 KIF20A Kinesin-like protein KIF20A yes yes 2;3 8.7743E-41 206.46 7 4 0.76593 1.0622 21.452 11 Median 0.80764 1.0851 9.9661 7 0 Median 0.48615 0.74357 3.7276 4 0 Linear 303060000 177750000 125310000 192290000 105440000 86849000 110770000 72312000 38462000 9056 1215 9308 32761;32762;32763;32764;32765;32766;32767;32768;32769;32770;32771 49357;49358;49359;49360;49361;49362;49363;49364;49365;49366;49367;49368;49369;49370;49371;49372;49373;49374;49375;49376 49358 20 NQSFCPTVNLDK GYFGKVGMKHYHLKRNQSFCPTVNLDKLWT LKRNQSFCPTVNLDKLWTLVSEQTRVNAAK R N Q D K L 0 0 2 1 1 1 0 0 0 0 1 1 0 1 1 1 1 0 0 1 0 0 12 0 1421.6609 Q9BQQ5;E9PLL6;Q6NZ52;P46776;E9PJD9 Q9BQQ5 66 77 L27a;RPL27A 60S ribosomal protein L27a yes no 2 3.5803E-08 145.99 4 2 0.83973 1.1006 64.729 6 Median 0.84644 1.1054 5.1471 4 0 Median 0.20517 0.32401 1.4883 2 0 Median 800820000 537250000 263580000 439520000 237870000 201660000 361300000 299380000 61921000 9057 1040 9309 32772;32773;32774;32775;32776;32777 49377;49378;49379;49380;49381;49382;49383;49384 49380 8 NQSLTLIELLK NEYDETKPELPSGKKNQSLTLIELLKNKRM SGKKNQSLTLIELLKNKRMGEERNSAISPQ K N Q L K N 0 0 1 0 0 1 1 0 0 1 4 1 0 0 0 1 1 0 0 0 0 0 11 0 1270.7497 A7E234;Q9H582;Q8NEI6;Q9H8J8;Q9NVH8 A7E234 1165 1175 ZNF644 Zinc finger protein 644 yes no 2 0.051 34.755 1 0.69691 0.96221 NaN 1 Median NaN NaN NaN 0 0 Median 0.69691 0.96221 NaN 1 0 Median 4918100 2737900 2180200 0 0 0 4918100 2737900 2180200 9058 573 9310 32778 49385 49385 1 NQSQGYNQWQQGQFWGQK YNQNFRGRGNNRGYKNQSQGYNQWQQGQFW QGYNQWQQGQFWGQKPWSQHYHQGYY____ K N Q Q K P 0 0 2 0 0 7 0 3 0 0 0 1 0 1 0 1 0 2 1 0 0 0 18 0 2210.9882 Q96BA7;B3KX72;B4DLR3;Q00839;Q7Z4Q5 Q96BA7 694 711 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 2 0.0062323 30.004 1 1.9943 3.0171 NaN 1 Median NaN NaN NaN 0 0 Median 1.9943 3.0171 NaN 1 0 Median 9000100 2904000 6096100 0 0 0 9000100 2904000 6096100 9059 788 9311 32779 49386 49386 1 NQSSDSSSACLEIK RSQLSDSSSADRCLRNQSSDSSSACLEIKV RNQSSDSSSACLEIKVPKNPSAKRSKKEGH R N Q I K V 1 0 1 1 1 1 1 0 0 1 1 1 0 0 0 5 0 0 0 0 0 0 14 0 1524.6726 A0A1B0GUH9;A0A1P0AZG4;A0PJI9 A0A1B0GUH9 805 818 C10orf12 yes no 2 1.672E-06 126.71 3 2 0.7078 0.90605 16.105 5 Median 0.7078 0.90605 18.176 3 0 Median 0.72663 0.97198 15.542 2 0 Median 17469000 10153000 7316100 11489000 6832100 4657100 5979800 3320800 2659100 9060 517 9312 32780;32781;32782;32783;32784 49387;49388;49389;49390;49391;49392;49393 49389 7 NQTAEKEEFEHQQK KILDKCNEIINWLDKNQTAEKEEFEHQQKE KNQTAEKEEFEHQQKELEKVCNPIITKLYQ K N Q Q K E 1 0 1 0 0 3 4 0 1 0 0 2 0 1 0 0 1 0 0 0 0 0 14 1 1744.8016 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;E9PNE6;B4E1Q1;A8K7Q2;Q96H53;E9PS65;Q96BE0;Q9NZ87;Q9NWW3;E9PM13 V9HW22 584 597 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 2;3 5.6611E-15 143.55 3 1 0.58475 0.72019 49.643 4 Median 0.59285 0.73646 9.0001 3 0 Plateau 1.3179 1.8282 NaN 1 0 Median 29630000 17970000 11659000 27458000 16915000 10543000 2171700 1055100 1116700 9061 1253 9313 32785;32786;32787;32788 49394;49395;49396;49397;49398;49399 49397 6 NQVALNPQNTVFDAK VAFTDTERLIGDAAKNQVALNPQNTVFDAK NQVALNPQNTVFDAKRLIGRKFGDPVVQSD K N Q A K R 2 0 3 1 0 2 0 0 0 0 1 1 0 1 1 0 1 0 0 2 0 0 15 0 1657.8424 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DNT8;B4DFN9;B4E388;B4E1T6;B4DNX1 A8K5I0 57 71 HEL-S-103;HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2 4.8893E-102 272.1 4 2 0.75952 0.9714 51.158 6 Median 0.73984 0.95425 4.2574 4 0 Median 1.59 2.5376 0.89544 2 0 Median 401700000 198660000 203040000 267530000 150350000 117180000 134170000 48310000 85861000 9062 439 9314 32789;32790;32791;32792;32793;32794 49400;49401;49402;49403;49404;49405;49406;49407;49408;49409;49410;49411;49412;49413 49401 14 NQVAMNPQNTVFDAK VAFTDTERLIGDAAKNQVAMNPQNTVFDAK NQVAMNPQNTVFDAKRLIGRKFNDPVVQAD K N Q A K R 2 0 3 1 0 2 0 0 0 0 0 1 1 1 1 0 1 0 0 2 0 0 15 0 1675.7988 B4DXY3;Q53FA3;B4DI54;P34931;B2RCQ9 B4DXY3 59 73 HSPA1L Heat shock 70 kDa protein 1-like yes no 2 3.4128E-21 166.11 3 0.58322 0.71941 7.0789 3 Median 0.58322 0.71941 7.0789 3 0 Median NaN NaN NaN 0 0 Median 35286000 21053000 14233000 35286000 21053000 14233000 0 0 0 9063 810 9315 32795;32796;32797 49414;49415;49416;49417;49418;49419;49420 49418 290 7 NQVAMNPTNTVFDAK VAFTDTERLIGDAAKNQVAMNPTNTVFDAK NQVAMNPTNTVFDAKRLIGRRFDDAVVQSD K N Q A K R 2 0 3 1 0 1 0 0 0 0 0 1 1 1 1 0 2 0 0 2 0 0 15 0 1648.7879 V9HW22;P11142;E9PKE3;Q53GZ6;Q53HF2;E9PNE6;B4DTX2;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 V9HW22 57 71 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 2 7.6079E-28 182.41 9 2 0.9025 1.1368 47.277 7 Median 0.61729 0.78307 28.608 5 0 Median 1.2981 2.0552 4.7541 2 0 Median 232660000 102150000 130510000 35934000 18302000 17632000 196730000 83846000 112880000 9064 1253 9316;9317 32798;32799;32800;32801;32802;32803;32804;32805;32806;32807;32808 49421;49422;49423;49424;49425;49426;49427;49428;49429;49430;49431;49432;49433;49434 49423 495 14 NQVDVEIK ETERSALDVKLKHARNQVDVEIKRRQRAEA VKLKHARNQVDVEIKRRQRAEADCEKLERQ R N Q I K R 0 0 1 1 0 1 1 0 0 1 0 1 0 0 0 0 0 0 0 2 0 0 8 0 943.49746 B2RE34;A0A024R136;Q9H0H5;F8VRD2;F8VWY4;F8VVE5;F8VWX0;F8W0L1;F8VZ66;F8VV47;F8VUW9;F8VV39;F8VQZ5;F8VS54;F8VV37;F8VYH6 B2RE34 77 84 RACGAP1 Rac GTPase-activating protein 1 yes no 2 0.02509 54.157 2 0.90582 1.328 9.694 2 Median NaN NaN NaN 0 0 Median 0.90582 1.328 9.694 2 0 Median 13903000 7426200 6476600 0 0 0 13903000 7426200 6476600 9065 49 9318 32809;32810 49435;49436 49435 2 NQVLVFVHSR MNEIVYEKIMEHAGKNQVLVFVHSRKETGK EHAGKNQVLVFVHSRKETGKTARAIRDMCL K N Q S R K 0 1 1 0 0 1 0 0 1 0 1 0 0 1 0 1 0 0 0 3 0 0 10 0 1197.6618 O75643;A4FU77;Q9H8B9 O75643 719 728 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 2.2165E-09 145.72 3 2 1.0871 1.4543 35.422 3 Median 0.6195 0.82364 NaN 1 0 Median 1.1294 1.515 5.7781 2 0 Median 37293000 25699000 11594000 26576000 20403000 6173400 10717000 5296500 5420500 9066 1206 9319 32811;32812;32813;32814;32815 49437;49438;49439;49440;49441;49442;49443 49437 7 NQYVPYPHAPGSQR AAPPPPGYHQNGVIRNQYVPYPHAPGSQRS RNQYVPYPHAPGSQRSNQKSLYTSMARPPL R N Q Q R S 1 1 1 0 0 2 0 1 1 0 0 0 0 0 3 1 0 0 2 1 0 0 14 0 1612.7746 Q4KMR3;Q12965 Q4KMR3 969 982 MYO1E Unconventional myosin-Ie yes no 2;3 0.00018286 111.86 5 0.49659 0.66992 12.648 2 Median 0.49659 0.66992 12.648 2 0 Median NaN NaN NaN 0 0 Median 63309000 48262000 15047000 63309000 48262000 15047000 0 0 0 9067 1459 9320 32816;32817;32818;32819;32820 49444;49445;49446;49447;49448 49448 5 NRDNDPNDYVEQDDILIVK DLISNSPRVIPVTSRNRDNDPNDYVEQDDI DPNDYVEQDDILIVKLRKGQELRLRAYAKK R N R V K L 0 1 3 5 0 1 1 0 0 2 1 1 0 0 1 0 0 0 1 2 0 0 19 1 2274.0764 Q6FGR6;P19387;B7Z6D1 Q6FGR6 134 152 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes no 3 0.021383 32.565 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3582600 3582600 0 3582600 3582600 0 0 0 0 9068 1283 9321 32821 49449 49449 1 NRDYPLASK DDELVAIIARTDLKKNRDYPLASKDAKKQL RTDLKKNRDYPLASKDAKKQLLCGAAIGTH K N R S K D 1 1 1 1 0 0 0 0 0 0 1 1 0 0 1 1 0 0 1 0 0 0 9 1 1062.5458 B4DNJ7;B3KRZ3;Q6ZNB1;Q5H9Q6;P20839;A0A024R725;C9J381;C9K0R9;P12268;H0Y4R1;B7Z1G4;Q6QE17;E7ETK5;Q6RUP9 P12268 230 238 IMPDH;DKFZp781N0678;IMPDH1;IMPDH2 Inosine-5-monophosphate dehydrogenase;Inosine-5-monophosphate dehydrogenase 1;Inosine-5-monophosphate dehydrogenase 2 no no 2 0.035497 64.711 1 0.33878 0.44065 NaN 1 Median 0.33878 0.44065 NaN 1 0 Median NaN NaN NaN 0 0 Median 19675000 14172000 5503500 19675000 14172000 5503500 0 0 0 9069 1261;772 9322 32822 49450 49450 1 NREEFEDQSLEK KDKNETENDSKDAEKNREEFEDQSLEKDSD AEKNREEFEDQSLEKDSDDKTPDDDPEQGK K N R E K D 0 1 1 1 0 1 4 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 12 1 1522.69 E7ETD6;Q12830;F5GXF5;A0A0A0MR81;B4DDK2;B4DM40;F5H176 E7ETD6 454 465 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.0017235 74.162 2 0.64175 0.82419 10.983 2 Median 0.64175 0.82419 10.983 2 0 Median NaN NaN NaN 0 0 Median 15117000 8840600 6276000 15117000 8840600 6276000 0 0 0 9070 1015 9323 32823;32824 49451;49452;49453;49454;49455 49451 5 NREELGFRPEYSASQLK LGMIDRWYHPGCFVKNREELGFRPEYSASQ EELGFRPEYSASQLKGFSLLATEDKEALKK K N R L K G 1 2 1 0 0 1 3 1 0 0 2 1 0 1 1 2 0 0 1 0 0 0 17 2 2023.0123 A0A024R3T8;P09874;B4E0E1;B2R5W3;Q05D33;Q6PJL0 A0A024R3T8 166 182 PARP1 Poly [ADP-ribose] polymerase 1 yes no 3;4 5.0003E-07 95.755 7 1 0.97889 1.2464 33.117 7 Median 0.99097 1.2547 10.136 6 0 Median 0.29474 0.53235 NaN 1 0 Median 959270000 482960000 476320000 904540000 440530000 464010000 54735000 42425000 12309000 9071 107 9324 32825;32826;32827;32828;32829;32830;32831;32832 49456;49457;49458;49459;49460;49461;49462;49463;49464;49465;49466;49467;49468 49462 13 NRENCELSDHCIK EFSQMEKSTKKTSFKNRENCELSDHCIKLQ FKNRENCELSDHCIKLQKRKSNVESALSHG K N R I K L 0 1 2 1 2 0 2 0 1 1 1 1 0 0 0 1 0 0 0 0 0 0 13 1 1673.725 F5H101;A0A024R250;Q76FK4;F8WE42;B4DM91;Q6AI50;A6H8Z4 F5H101 414 426 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 3 0.001966 80.746 3 0.71928 0.98223 16.012 3 Median 0.71928 0.98223 16.012 3 0 Median NaN NaN NaN 0 0 Median 18895000 10351000 8544000 18895000 10351000 8544000 0 0 0 9072 80 9325 32833;32834;32835 49469;49470;49471 49469 3 NREPVQLETLSIR VSMNTHLKAVKMTLKNREPVQLETLSIRGN LKNREPVQLETLSIRGNNIRYFILPDSLPL K N R I R G 0 2 1 0 0 1 2 0 0 1 2 0 0 0 1 1 1 0 0 1 0 0 13 1 1553.8526 P62314;J3QLI9;Q7Z5A3 P62314 49 61 SNRPD1 Small nuclear ribonucleoprotein Sm D1 yes no 2;3 8.4625E-11 149.57 7 2 0.6655 0.92924 6.8133 9 Median 0.67634 0.93644 6.4969 7 0 Median 0.5882 0.87973 7.7432 2 0 Median 171760000 102550000 69208000 137950000 81618000 56333000 33808000 20933000 12875000 9073 1407 9326 32836;32837;32838;32839;32840;32841;32842;32843;32844 49472;49473;49474;49475;49476;49477;49478;49479;49480;49481;49482;49483;49484;49485;49486;49487;49488 49481 17 NRKPSDSVHITNDDER KKEKNKEAIYSGYIRNRKPSDSVHITNDDE RKPSDSVHITNDDERFLHHLIIEEKEKDSF R N R E R F 0 2 2 3 0 0 1 0 1 1 0 1 0 0 1 2 1 0 0 1 0 0 16 2 1881.8929 A6NHR9 A6NHR9 289 304 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3 0.026654 53.169 1 0.79442 0.83218 NaN 1 Median 0.79442 0.83218 NaN 1 0 Median NaN NaN NaN 0 0 Median 1464400 751140 713290 1464400 751140 713290 0 0 0 9074 568 9327 32845 49489 49489 1 NRNELAETLALLK EQDDQDGSSWKCIVRNRNELAETLALLKAQ VRNRNELAETLALLKAQIDPVLLKNSSQQD R N R L K A 2 1 2 0 0 0 2 0 0 0 4 1 0 0 0 0 1 0 0 0 0 0 13 1 1483.8358 Q96T23;H0YER1;Q05DG0;H7C306 Q96T23 194 206 RSF1 Remodeling and spacing factor 1 yes no 2 0.0036984 59.542 1 0.53836 0.70007 NaN 1 Median 0.53836 0.70007 NaN 1 0 Median NaN NaN NaN 0 0 Median 11169000 6799500 4369900 11169000 6799500 4369900 0 0 0 9075 1702 9328 32846 49490 49490 1 NRPNVQVGDLIYGQFVVANK PASLSYLSFEGATKRNRPNVQVGDLIYGQF QVGDLIYGQFVVANKDMEPEMVCIDSCGRA R N R N K D 1 1 3 1 0 2 0 2 0 1 1 1 0 1 1 0 0 0 1 4 0 0 20 1 2230.1859 Q9NQT5 Q9NQT5 153 172 EXOSC3 Exosome complex component RRP40 yes yes 3 0.022906 18.316 1 1.1543 1.4852 NaN 1 Median 1.1543 1.4852 NaN 1 0 Median NaN NaN NaN 0 0 Median 7095600 3487400 3608200 7095600 3487400 3608200 0 0 0 9076 1754 9329 32847 49491;49492 49492 2 NRPPLPAGTNSK KDVYVQLYLQHLTARNRPPLPAGTNSKGPP TARNRPPLPAGTNSKGPPDFSSDEEREPTP R N R S K G 1 1 2 0 0 0 0 1 0 0 1 1 0 0 3 1 1 0 0 0 0 0 12 1 1250.6731 A0A024RBE7;P42167;G5E972;A0A024RBH7;Q59G12;P42166 P42166 49 60 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin no no 2;3 3.196E-44 194.17 6 3 0.52468 0.71097 15.773 9 Median 0.52714 0.68829 17.438 6 0 Median 0.51419 0.82348 6.3514 3 0 Median 268360000 174150000 94205000 155290000 100840000 54450000 113070000 73309000 39756000 9077 1335;270 9330 32848;32849;32850;32851;32852;32853;32854;32855;32856 49493;49494;49495;49496;49497;49498;49499;49500;49501;49502;49503;49504;49505;49506;49507;49508;49509;49510 49506 18 NSADDEELTNDSLTLSQSK SEGGCKKKKSKVLSRNSADDEELTNDSLTL DEELTNDSLTLSQSKSNEDSLILEKSQNWS R N S S K S 1 0 2 3 0 1 2 0 0 0 3 1 0 0 0 4 2 0 0 0 0 0 19 0 2065.9288 A0A0U1RRH6;O94880 A0A0U1RRH6 279 297 PHF14 PHD finger protein 14 yes no 2 0.010426 72.523 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 680070 0 680070 680070 0 680070 0 0 0 9078 487 9331 32857 49511 49511 1 NSAEEEVLSSEK EELNEDIKVKEEQLKNSAEEEVLSSEKQLI QLKNSAEEEVLSSEKQLIKMEKKEEEENGE K N S E K Q 1 0 1 0 0 0 4 0 0 0 1 1 0 0 0 3 0 0 0 1 0 0 12 0 1320.6045 A0A0U1RRH6;O94880 A0A0U1RRH6 83 94 PHF14 PHD finger protein 14 yes no 2 2.3583E-19 183.85 4 2 0.81211 1.0273 46.734 6 Median 0.7953 1.0057 23.705 4 0 Median 1.3788 2.0616 10.689 2 0 Median 55112000 28488000 26624000 39077000 21324000 17753000 16035000 7163700 8871200 9079 487 9332 32858;32859;32860;32861;32862;32863 49512;49513;49514;49515;49516;49517;49518;49519;49520;49521 49513 10 NSAFESLYQDK TELLDLQPLPVSALRNSAFESLYQDKFPFF SALRNSAFESLYQDKFPFFNPIQTQVFNTV R N S D K F 1 0 1 1 0 1 1 0 0 0 1 1 0 1 0 2 0 0 1 0 0 0 11 0 1300.5935 O75643;A4FU77 O75643 1314 1324 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0013927 112.3 4 0.56949 0.70743 2.066 3 Plateau 0.56949 0.70743 2.066 3 0 Plateau NaN NaN NaN 0 0 Median 33695000 20202000 13493000 33695000 20202000 13493000 0 0 0 9080 1206 9333 32864;32865;32866;32867 49522;49523;49524;49525;49526 49526 3 NSASATTPLSGNSSR SDKQYAENYTRPSSRNSASATTPLSGNSSR NSASATTPLSGNSSRRGSGDTSSLIDPDTS R N S S R R 2 1 2 0 0 0 0 1 0 0 1 0 0 0 1 5 2 0 0 0 0 0 15 0 1448.6855 A0A1S5UZ17;A0A024R2K4;Q9Y608;C9JSU1 A0A1S5UZ17 113 127 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 yes no 2 0.0052455 94.688 3 1.1851 1.5946 NaN 1 Median 1.1851 1.5946 NaN 1 0 Median NaN NaN NaN 0 0 Median 3032400 2402500 629870 3032400 2402500 629870 0 0 0 9081 87 9334 32868;32869;32870 49527;49528;49529 49528 3 NSAVETVEQELLFVGSETGK KLNLDNVISVSIGARNSAVETVEQELLFVG TVEQELLFVGSETGKLLAMRELVKKGFNPP R N S G K L 1 0 1 0 0 1 4 2 0 0 2 1 0 1 0 2 2 0 0 3 0 0 20 0 2136.0586 Q9Y2R4;B3KM65;Q59H21 Q9Y2R4 380 399 DDX52 Probable ATP-dependent RNA helicase DDX52 yes no 2 3.7005E-19 142.95 3 1.1804 1.4989 0.57212 2 Median 1.1804 1.4989 0.57212 2 0 Median NaN NaN NaN 0 0 Median 19328000 6193400 13135000 19328000 6193400 13135000 0 0 0 9082 1807 9335 32871;32872;32873 49530;49531;49532;49533 49532 4 NSDEADLVPAK ATDSSGELMFLMKWKNSDEADLVPAKEANV MKWKNSDEADLVPAKEANVKCPQVVISFYE K N S A K E 2 0 1 2 0 0 1 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 11 0 1157.5564 J3KS05;Q6IBN6;P83916;B5MD17 J3KS05 140 150 CBX1 Chromobox protein homolog 1 yes no 2 0.0001928 119.22 4 2 1.7824 2.196 32.262 5 Linear 1.9343 2.4192 34.358 3 0 Plateau 0.75144 1.146 3.0715 2 0 Median 163580000 71814000 91763000 119010000 45209000 73797000 44571000 26605000 17966000 9083 1137 9336 32874;32875;32876;32877;32878;32879 49534;49535;49536;49537;49538;49539;49540;49541;49542;49543 49537 10 NSDRTPLVSVLLEGPPHSGK TRVLDDGELLVQQTKNSDRTPLVSVLLEGP PLVSVLLEGPPHSGKTALAAKIAEESNFPF K N S G K T 0 1 1 1 0 0 1 2 1 0 3 1 0 0 3 3 1 0 0 2 0 0 20 1 2102.112 B4DGR3;I3L0N3;B7Z5J7;P46459;B7Z9U2;B4DH19;B4DSK5;D3DXJ4;Q96D47 B4DGR3 488 507 NSF Vesicle-fusing ATPase yes no 3 0.0090693 34.265 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5697300 5697300 0 5697300 5697300 0 0 0 0 9084 805 9337 32880 49544 49544 1 NSELLVVSAR SQGSTLVHPFRALGKNSELLVVSAREDVAT RALGKNSELLVVSAREDVATWQQSSLSLRW K N S A R E 1 1 1 0 0 0 1 0 0 0 2 0 0 0 0 2 0 0 0 2 0 0 10 0 1086.6033 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 644 653 NOP14 Nucleolar protein 14 yes no 2 0.00046214 85.533 1 2 0.77714 1.1769 6.3351 3 Median 0.96501 1.2762 NaN 1 0 Median 0.76073 1.1514 3.0954 2 0 Median 45635000 24960000 20675000 10598000 5890600 4707600 35037000 19069000 15968000 9085 652 9338 32881;32882;32883 49545;49546;49547;49548;49549;49550 49546 6 NSEPAGLETPEAK GQPPLSQSSDSSPTRNSEPAGLETPEAKVL TRNSEPAGLETPEAKVLFDKVASQGEVVRK R N S A K V 2 0 1 0 0 0 3 1 0 0 1 1 0 0 2 1 1 0 0 0 0 0 13 0 1341.6412 P07814;V9GYZ6;Q3KQZ8;B4DKX5 P07814 890 902 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.00020414 98.156 3 2 1.207 1.6657 96.546 4 Median 0.54118 0.68424 18.456 2 0 Median 2.3862 3.6055 1.8486 2 0 Median 38418000 17276000 21142000 14211000 10400000 3811000 24207000 6875900 17331000 9086 1242 9339 32884;32885;32886;32887;32888 49551;49552;49553;49554;49555;49556 49554 6 NSEPEEVIPSR PDPSKQKPMAKGPAKNSEPEEVIPSRLDIR GPAKNSEPEEVIPSRLDIRVGKIITVEKHP K N S S R L 0 1 1 0 0 0 3 0 0 1 0 0 0 0 2 2 0 0 0 1 0 0 11 0 1255.6044 A0A0S2Z4R1;P54577 A0A0S2Z4R1 357 367 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes no 2 0.0030211 61.765 1 0.22953 0.31221 NaN 1 Median 0.22953 0.31221 NaN 1 0 Median NaN NaN NaN 0 0 Median 9255100 6543700 2711400 9255100 6543700 2711400 0 0 0 9087 468 9340 32889 49557;49558 49558 2 NSESLHQENKPGSVKPTQTIAVK NDKSTAPIAKPLATRNSESLHQENKPGSVK NKPGSVKPTQTIAVKESLTTDLQTRKEKDT R N S V K E 1 0 2 0 0 2 2 1 1 1 1 3 0 0 2 3 2 0 0 2 0 0 23 2 2491.3031 J3QQW9;Q15022;A8K1U9 J3QQW9 358 380 SUZ12 Polycomb protein SUZ12 yes no 3;4 1.2007E-05 85.397 4 0.85082 1.0003 12.591 3 Median 0.85082 1.0003 12.591 3 0 Median NaN NaN NaN 0 0 Median 63307000 32152000 31155000 63307000 32152000 31155000 0 0 0 9088 1143 9341 32890;32891;32892;32893 49559;49560;49561;49562;49563;49564 49564 6 NSFREQLEEEEEAK KLSLSTKLKQVEDEKNSFREQLEEEEEAKH KNSFREQLEEEEEAKHNLEKQIATLHAQVA K N S A K H 1 1 1 0 0 1 6 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 14 1 1736.7853 A0A024R1N1;P35579;Q86XU5;A0A0U4BW16 A0A024R1N1 1339 1352 MYH9 Myosin-9 no no 2;3 4.9245E-49 190.34 6 0.99801 1.3193 7.4952 6 Median 0.99801 1.3193 7.4952 6 0 Median NaN NaN NaN 0 0 Median 306590000 163900000 142680000 306590000 163900000 142680000 0 0 0 9089 61;490 9342 32894;32895;32896;32897;32898;32899 49565;49566;49567;49568;49569;49570;49571;49572;49573;49574;49575;49576;49577;49578 49568 14 NSGELEATSAFLASGQR KFNLDLSTVTQAFLKNSGELEATSAFLASG GELEATSAFLASGQRADGYPIWSRQDDIDL K N S Q R A 3 1 1 0 0 1 2 2 0 0 2 0 0 1 0 3 1 0 0 0 0 0 17 0 1736.8329 Q9NYB0 Q9NYB0 339 355 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes yes 2 1.5847E-113 279.65 3 0.99733 1.3534 13.138 3 Median 0.99733 1.3534 13.138 3 0 Median NaN NaN NaN 0 0 Median 12951000 6858300 6092800 12951000 6858300 6092800 0 0 0 9090 1769 9343 32900;32901;32902 49579;49580;49581;49582;49583 49580 5 NSHCAQTVSSVFK QKLLRMLFDLLVNCKNSHCAQTVSSVFKGI CKNSHCAQTVSSVFKGISVNAEQVRIELEP K N S F K G 1 0 1 0 1 1 0 0 1 0 0 1 0 1 0 3 1 0 0 2 0 0 13 0 1463.6827 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8 B2RWN5 1140 1152 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 4.2351E-08 145.83 3 0.89875 1.0966 3.5232 3 Median 0.89875 1.0966 3.5232 3 0 Median NaN NaN NaN 0 0 Median 39425000 20475000 18950000 39425000 20475000 18950000 0 0 0 9091 748 9344 32903;32904;32905 49584;49585;49586 49584 3 NSILDQYGK MNDRDPRLRERSLARNSILDQYGKILPRVH ERSLARNSILDQYGKILPRVHRKLAIERAK R N S G K I 0 0 1 1 0 1 0 1 0 1 1 1 0 0 0 1 0 0 1 0 0 0 9 0 1036.5189 Q8WYP5;B3KVE5 Q8WYP5 994 1002 AHCTF1 Protein ELYS yes no 2 0.00011465 120.87 4 2 0.76326 0.98688 10.179 6 Median 0.83799 1.0445 11.723 4 0 Median 0.61049 0.9343 3.0561 2 0 Median 132270000 76223000 56049000 85302000 48011000 37291000 46970000 28212000 18757000 9092 1670 9345 32906;32907;32908;32909;32910;32911 49587;49588;49589;49590;49591;49592;49593;49594;49595;49596;49597 49591 11 NSITHGSFSGSLQGYPSSGAK TMLELLLRLKHLSLKNSITHGSFSGSLQGY SFSGSLQGYPSSGAKSLQSVSSISDLNFQN K N S A K S 1 0 1 0 0 1 0 4 1 1 1 1 0 1 1 6 1 0 1 0 0 0 21 0 2080.9814 Q13129;Q59GL0 Q13129 1074 1094 RLF Zinc finger protein Rlf yes no 3 0.031881 13.904 1 0.51046 0.69275 NaN 1 Median NaN NaN NaN 0 0 Median 0.51046 0.69275 NaN 1 0 Median 3730000 2456800 1273200 0 0 0 3730000 2456800 1273200 9093 1463 9346 32912 49598 49598 1 NSITSYFGAAGR LNNLADQELQLNHLKNSITSYFGAAGRIAC HLKNSITSYFGAAGRIACGEKYRVLARRVT K N S G R I 2 1 1 0 0 0 0 2 0 1 0 0 0 1 0 2 1 0 1 0 0 0 12 0 1242.5993 B4DZG1;Q9Y483;Q96G26 B4DZG1 448 459 MTF2 Metal-response element-binding transcription factor 2 yes no 2 4.578E-05 97.597 3 2 0.79891 1.105 18.056 5 Median 0.87918 1.2171 21.822 3 0 Median 0.77942 1.0997 0.67776 2 0 Median 42735000 22379000 20356000 21861000 11029000 10832000 20874000 11350000 9524100 9094 878 9347 32913;32914;32915;32916;32917 49599;49600;49601;49602;49603;49604 49602 5 NSLEFFTMLAQR DARQVVLKYTVPGYRNSLEFFTMLAQRRGM GYRNSLEFFTMLAQRRGMHQKGGIPNVEGA R N S Q R R 1 1 1 0 0 1 1 0 0 0 2 0 1 2 0 1 1 0 0 0 0 0 12 0 1455.718 A0A024R2Z6 A0A024R2Z6 348 359 GNL3 yes yes 2 0.00022838 133.75 3 1 0.60212 0.81453 16.05 3 Median 0.66171 0.90063 14.212 2 0 Median 0.47876 0.72512 NaN 1 0 Median 24951000 16611000 8340300 6729200 4767500 1961700 18222000 11843000 6378600 9095 95 9348;9349 32918;32919;32920;32921 49605;49606;49607;49608 49605 56 4 NSLESYAFNMK YKAEDEKQRDKVSSKNSLESYAFNMKATVE VSSKNSLESYAFNMKATVEDEKLQGKINDE K N S M K A 1 0 2 0 0 0 1 0 0 0 1 1 1 1 0 2 0 0 1 0 0 0 11 0 1302.5914 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;E9PNE6;B4E1Q1;A8K7Q2;Q96H53;E9PS65;Q96BE0;Q9NZ87;Q9NWW3;E9PM13 V9HW22 540 550 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 2 4.0301E-05 92.732 2 1.2845 1.9848 4.3945 2 Median NaN NaN NaN 0 0 Median 1.2845 1.9848 4.3945 2 0 Median 51692000 23152000 28540000 0 0 0 51692000 23152000 28540000 9096 1253 9350 32922;32923 49609;49610 49610 496 2 NSLISSLEEEVSILNR WKAQVARGRQEAERKNSLISSLEEEVSILN SLISSLEEEVSILNRQVLEKEGESKELKRL K N S N R Q 0 1 2 0 0 0 3 0 0 2 3 0 0 0 0 4 0 0 0 1 0 0 16 0 1801.9422 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1224 1239 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 8.3097E-60 220.32 3 0.69646 0.93661 14.918 3 Median 0.69646 0.93661 14.918 3 0 Median NaN NaN NaN 0 0 Median 66196000 37817000 28380000 66196000 37817000 28380000 0 0 0 9097 148;1499 9351 32924;32925;32926 49611;49612;49613;49614 49612 4 NSLPDALLPNLLDR DTPRGSWACSIFDLKNSLPDALLPNLLDRT KNSLPDALLPNLLDRTPNEEIDRQNDDQRK K N S D R T 1 1 2 2 0 0 0 0 0 0 5 0 0 0 2 1 0 0 0 0 0 0 14 0 1549.8464 Q96N67;A0A1B0GUE9;A0A0C4DGY6;A0A1B0GVW2 Q96N67 200 213 DOCK7 Dedicator of cytokinesis protein 7 yes no 2 0.00063269 83.314 4 0.63316 0.85569 20.36 3 Median 0.63316 0.85569 20.36 3 0 Median NaN NaN NaN 0 0 Median 7263000 4376300 2886800 7263000 4376300 2886800 0 0 0 9098 1696 9352 32927;32928;32929;32930 49615;49616;49617;49618;49619 49617 5 NSLPDTVQIR LVPNNTTDQELQHIRNSLPDTVQIRRVEER LQHIRNSLPDTVQIRRVEERLSALGNVTTC R N S I R R 0 1 1 1 0 1 0 0 0 1 1 0 0 0 1 1 1 0 0 1 0 0 10 0 1141.6091 P56537;B7ZBH1 P56537 86 95 EIF6 Eukaryotic translation initiation factor 6 yes no 2 5.663E-05 115.7 5 2 0.75284 1.0291 10.302 6 Median 0.80694 1.1159 8.1601 4 0 Median 0.56938 0.92682 3.3011 2 0 Median 404560000 235650000 168910000 262700000 144440000 118250000 141860000 91204000 50659000 9099 1382 9353 32931;32932;32933;32934;32935;32936;32937 49620;49621;49622;49623;49624;49625;49626;49627;49628;49629;49630;49631;49632 49631 13 NSLQEQQEEEEEARK KLNLSSRIRQLEEEKNSLQEQQEEEEEARK NSLQEQQEEEEEARKNLEKQVLALQSQLAD K N S R K N 1 1 1 0 0 3 6 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 15 1 1845.8341 P35580 P35580 1346 1360 MYH10 Myosin-10 yes yes 3 0.00033754 51.466 2 0.55035 0.72966 5.1277 2 Median 0.55035 0.72966 5.1277 2 0 Median NaN NaN NaN 0 0 Median 6099000 4043700 2055300 6099000 4043700 2055300 0 0 0 9100 1320 9354 32938;32939 49633;49634 49634 2 NSLVDKPFAAK DRHWHEACFHCSQCRNSLVDKPFAAKEDQL SQCRNSLVDKPFAAKEDQLLCTDCYSNEYS R N S A K E 2 0 1 1 0 0 0 0 0 0 1 2 0 1 1 1 0 0 0 1 0 0 11 1 1188.6503 I0CE67;Q6I9R8;Q2XQU9;J3KNW4;A0A0A0MSG2;Q14192;Q2TSB7;Q53QP3 I0CE67 63 73 FHL2;AAG11 Four and a half LIM domains protein 2 yes no 2 0.035069 83.397 1 0.4134 0.5145 NaN 1 Median 0.4134 0.5145 NaN 1 0 Median NaN NaN NaN 0 0 Median 2574100 1869300 704800 2574100 1869300 704800 0 0 0 9101 396 9355 32940 49635 49635 1 NSNLEIPDTLQELFAR EFVEKLKEKFSSALRNSNLEIPDTLQELFA SNLEIPDTLQELFARYRVLAIGDEKDQTRK R N S A R Y 1 1 2 1 0 1 2 0 0 1 3 0 0 1 1 1 1 0 0 0 0 0 16 0 1858.9425 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 1384 1399 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 3.7871E-05 65.395 1 0.616 0.83053 NaN 1 Median 0.616 0.83053 NaN 1 0 Median NaN NaN NaN 0 0 Median 5661500 3204500 2457000 5661500 3204500 2457000 0 0 0 9102 1457 9356 32941 49636;49637 49636 2 NSNLVGAAHEELQQSR TYSAKLDNARQSAERNSNLVGAAHEELQQS SNLVGAAHEELQQSRIRIDSLSAQLSQLQK R N S S R I 2 1 2 0 0 2 2 1 1 0 2 0 0 0 0 2 0 0 0 1 0 0 16 0 1751.8551 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;Q5TCI8 P02545 281 296 LMNA Prelamin-A/C;Lamin-A/C yes no 2;3 1.0455E-168 316.12 7 4 0.63916 0.87627 54.37 11 Median 0.60849 0.84396 6.0924 7 0 Median 1.5469 2.538 13.68 4 0 Median 1258900000 679810000 579120000 836100000 519820000 316280000 422840000 160000000 262840000 9103 1229 9357 32942;32943;32944;32945;32946;32947;32948;32949;32950;32951;32952 49638;49639;49640;49641;49642;49643;49644;49645;49646;49647;49648;49649;49650;49651;49652;49653;49654;49655;49656;49657 49642 19 NSNPALNDNLEK TAGLDIFAKFSAYIKNSNPALNDNLEKGLL YIKNSNPALNDNLEKGLLKALKVLDNYLTS K N S E K G 1 0 4 1 0 0 1 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 12 0 1327.6368 Q5SRT3;Q53FB0;O00299 Q5SRT3 120 131 CLIC1 Chloride intracellular channel protein;Chloride intracellular channel protein 1 yes no 2 0.0070985 47.559 1 4.3236 5.9574 NaN 1 Median NaN NaN NaN 0 0 Median 4.3236 5.9574 NaN 1 0 Median 5236900 1075200 4161600 0 0 0 5236900 1075200 4161600 9104 1166 9358 32953 49658 49658 1 NSNPDEIEIDFETLKPSTLR GRVVHIIQSREPSLKNSNPDEIEIDFETLK EIEIDFETLKPSTLRELERYVTSCLRKKRK K N S L R E 0 1 2 2 0 0 3 0 0 2 2 1 0 1 2 2 2 0 0 0 0 0 20 1 2317.1438 O60885;A0A024R7H8 O60885 646 665 BRD4 Bromodomain-containing protein 4 yes no 3 0.00067672 37.09 1 0.94772 1.2272 NaN 1 Median 0.94772 1.2272 NaN 1 0 Median NaN NaN NaN 0 0 Median 9516600 4457800 5058800 9516600 4457800 5058800 0 0 0 9105 1194 9359 32954 49659 49659 1 NSNVDSSYLESLYQSCPR SGTWIQYGEEKDKRKNSNVDSSYLESLYQS VDSSYLESLYQSCPRGVVPFQAGSRNYELS K N S P R G 0 1 2 1 1 1 1 0 0 0 2 0 0 0 1 5 0 0 2 1 0 0 18 0 2117.9324 Q7Z2W4;C9J6P4;Q05DV5;H7C5K1 Q7Z2W4 630 647 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 1.9894E-17 155.09 2 0.56681 0.79014 NaN 1 Median 0.56681 0.79014 NaN 1 0 Median NaN NaN NaN 0 0 Median 5545800 4005600 1540200 5545800 4005600 1540200 0 0 0 9106 1613 9360 32955;32956 49660;49661 49661 2 NSPQEEVELK LGIQDGCRVMLIGKKNSPQEEVELKKLKHL LIGKKNSPQEEVELKKLKHLEKSVEKIADQ K N S L K K 0 0 1 0 0 1 3 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 10 0 1171.5721 A0A0S2Z3K4;J3QTA2;Q99933;A0A0U1RR89;C9JYK5 A0A0S2Z3K4 151 160 BAG1 BAG family molecular chaperone regulator 1 yes no 2 0.014357 57.55 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2568400 2568400 0 0 0 0 2568400 2568400 0 9107 454 9361 32957 49662 49662 1 NSPVEAVFSYLTGK TATPQIEEEVSLTQKNSPVEAVFSYLTGKR KNSPVEAVFSYLTGKRISEACSLAQQSGDH K N S G K R 1 0 1 0 0 0 1 1 0 0 1 1 0 1 1 2 1 0 1 2 0 0 14 0 1510.7668 P52948;H7C3P6 P52948 1328 1341 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 7.5121E-07 133.88 3 0.40027 0.5188 11.408 3 Median 0.40027 0.5188 11.408 3 0 Median NaN NaN NaN 0 0 Median 13096000 9578500 3517900 13096000 9578500 3517900 0 0 0 9108 1367 9362 32958;32959;32960 49663;49664;49665;49666;49667 49665 5 NSPVFELLPCGIIQGEPGAQPQLITFHPSFNK RVQDGKPVILLFRTRNSPVFELLPCGIIQG GAQPQLITFHPSFNKGALLSVGWSTGRIAH R N S N K G 1 0 2 0 1 3 2 3 1 3 3 1 0 3 5 2 1 0 0 1 0 0 32 0 3534.797 F8VZ44;B4DDU7;Q53HS1;Q9NRG9 F8VZ44 311 342 AAAS Aladin yes no 3 0.0020425 42.288 1 0.49215 0.62263 NaN 1 Median 0.49215 0.62263 NaN 1 0 Median NaN NaN NaN 0 0 Median 1620000 1086000 534000 1620000 1086000 534000 0 0 0 9109 796 9363 32961 49668 49668 1 NSQFAGGPLGNPNTTAK SVLQELKGLQEFLDRNSQFAGGPLGNPNTT QFAGGPLGNPNTTAKVQQRLIGFMRPENGN R N S A K V 2 0 3 0 0 1 0 3 0 0 1 1 0 1 2 1 2 0 0 0 0 0 17 0 1672.8169 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 686 702 NUP155 Nuclear pore complex protein Nup155 yes no 2 1.6079E-69 228.7 3 0.36381 0.4649 8.9843 2 Median 0.36381 0.4649 8.9843 2 0 Median NaN NaN NaN 0 0 Median 14103000 10238000 3865500 14103000 10238000 3865500 0 0 0 9110 29 9364 32962;32963;32964 49669;49670;49671;49672 49669 4 NSQLFAASQK TSPKALVIGKDHESKNSQLFAASQKFRKNT DHESKNSQLFAASQKFRKNTAPSLSSRKNM K N S Q K F 2 0 1 0 0 2 0 0 0 0 1 1 0 1 0 2 0 0 0 0 0 0 10 0 1092.5564 Q9Y232 Q9Y232 163 172 CDYL Chromodomain Y-like protein yes yes 2 0.00042605 92.051 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5931100 0 5931100 5931100 0 5931100 0 0 0 9111 1802 9365 32965 49673 49673 1 NSQLGIFSSSEK KVSLFGKRTSGHGSRNSQLGIFSSSEKIKD GSRNSQLGIFSSSEKIKDPRPLNDKAFIQQ R N S E K I 0 0 1 0 0 1 1 1 0 1 1 1 0 1 0 4 0 0 0 0 0 0 12 0 1295.6357 A8K031;O14777;Q05DQ6 A8K031 68 79 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 0.0054702 81.525 2 1 0.55324 0.71937 18.306 2 Median 0.55324 0.71937 18.306 2 0 Median NaN NaN NaN 0 0 Median 11043000 8755400 2288000 6832900 4544900 2288000 4210500 4210500 0 9112 574 9366 32966;32967;32968 49674;49675;49676;49677 49676 4 NSSAFSYQR PTFSVIESHPGTLLRNSSAFSYQRQTSNRS PGTLLRNSSAFSYQRQTSNRSEPSGEINID R N S Q R Q 1 1 1 0 0 1 0 0 0 0 0 0 0 1 0 3 0 0 1 0 0 0 9 0 1058.4781 P42695;G3V1A9;E9PKK4 P42695 506 514 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.021931 51.113 1 1 0.53976 0.74705 30.508 2 Median 0.69002 0.92691 NaN 1 0 Median 0.42222 0.60209 NaN 1 0 Median 25076000 16193000 8882900 14888000 8785700 6102200 10189000 7407800 2780700 9113 1338 9367 32969;32970 49678;49679 49679 2 NSSHAGAFVIVTEEAIAK GSLTSVEFCGGTHLRNSSHAGAFVIVTEEA HAGAFVIVTEEAIAKGIRRIVAVTGAEAQK R N S A K G 4 0 1 0 0 0 2 1 1 2 0 1 0 1 0 2 1 0 0 2 0 0 18 0 1842.9476 P49588;H3BPK7 P49588 730 747 AARS Alanine--tRNA ligase, cytoplasmic yes no 3 0.04166 25.888 1 0.72135 0.94398 NaN 1 Median 0.72135 0.94398 NaN 1 0 Median NaN NaN NaN 0 0 Median 2054100 1346200 707930 2054100 1346200 707930 0 0 0 9114 1352 9368 32971 49680 49680 1 NSSISGPFGSR EAFGRRERLVLGSARNSSISGPFGSRSSDT GSARNSSISGPFGSRSSDTPMES_______ R N S S R S 0 1 1 0 0 0 0 2 0 1 0 0 0 1 1 4 0 0 0 0 0 0 11 0 1107.5309 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DNL1;B4DJV5 Q9BV37 483 493 PWP1 Periodic tryptophan protein 1 homolog yes no 2 0.0081292 58.37 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31647000 31647000 0 0 0 0 31647000 31647000 0 9115 273 9369 32972;32973 49681;49682 49682 2 NSSISIPFIPETPVR KHKMNTERILYKQKKNSSISIPFIPETPVR NSSISIPFIPETPVRTRIVSRLKPDWVLRR K N S V R T 0 1 1 0 0 0 1 0 0 3 0 0 0 1 3 3 1 0 0 1 0 0 15 0 1655.8883 Q8IZT6;Q4G1H2;Q5VYL4 Q8IZT6 3424 3438 ASPM Abnormal spindle-like microcephaly-associated protein yes no 2 0.00092015 92.19 2 0.81896 1.1356 20.671 2 Median 0.81896 1.1356 20.671 2 0 Median NaN NaN NaN 0 0 Median 10605000 6534200 4071000 10605000 6534200 4071000 0 0 0 9116 1631 9370 32974;32975 49683;49684 49683 2 NSSQFFQSYVER YKKKYSDADIEPFLKNSSQFFQSYVERGLR FLKNSSQFFQSYVERGLRVIEMEREGKGRI K N S E R G 0 1 1 0 0 2 1 0 0 0 0 0 0 2 0 3 0 0 1 1 0 0 12 0 1490.679 Q14008;Q8IYN5;H0YDX5 Q14008 1871 1882 CKAP5 Cytoskeleton-associated protein 5 yes no 2 0.008044 87.667 2 2 0.80034 1.1655 18.045 2 Median 0.72586 1.0259 NaN 1 0 Median 0.88248 1.3241 NaN 1 0 Median 13898000 4030500 9867200 3823900 1220400 2603500 10074000 2810200 7263700 9117 1481 9371 32976;32977;32978;32979 49685;49686;49687;49688 49687 4 NSSSEQLFSSAR AFQFPTKKLANKPDKNSSSEQLFSSARLQN PDKNSSSEQLFSSARLQNEKKTILERKKDC K N S A R L 1 1 1 0 0 1 1 0 0 0 1 0 0 1 0 5 0 0 0 0 0 0 12 0 1311.6055 A8K8X5;A0A024RA51;Q96GN5;C9IZR6 A8K8X5 160 171 CDCA7L Cell division cycle-associated 7-like protein yes no 2 0.0051098 77.288 2 0.94947 1.2817 NaN 1 Median 0.94947 1.2817 NaN 1 0 Median NaN NaN NaN 0 0 Median 4895700 2808500 2087200 4895700 2808500 2087200 0 0 0 9118 236 9372 32980;32981 49689;49690 49690 2 NSSTIIQNPVETPK STDNQRQQQLNDVVKNSSTIIQNPVETPKK KNSSTIIQNPVETPKKDYSLLPLLAAAPQV K N S P K K 0 0 2 0 0 1 1 0 0 2 0 1 0 0 2 2 2 0 0 1 0 0 14 0 1526.794 P38432 P38432 445 458 COIL Coilin yes yes 2 0.003146 84.188 3 0.55476 0.68847 NaN 1 Median 0.55476 0.68847 NaN 1 0 Median NaN NaN NaN 0 0 Median 1482800 913240 569590 1482800 913240 569590 0 0 0 9119 1328 9373 32982;32983;32984 49691;49692;49693;49694 49693 4 NSSTIIQNPVETPKK STDNQRQQQLNDVVKNSSTIIQNPVETPKK NSSTIIQNPVETPKKDYSLLPLLAAAPQVG K N S K K D 0 0 2 0 0 1 1 0 0 2 0 2 0 0 2 2 2 0 0 1 0 0 15 1 1654.889 P38432 P38432 445 459 COIL Coilin yes yes 2 5.6762E-08 138.24 3 1 0.49565 0.60563 11.398 3 Median 0.48564 0.5925 3.0994 2 0 Median 0.49565 0.71916 NaN 1 0 Median 8611800 6246500 2365300 5331900 4271600 1060400 3279800 1974900 1304900 9120 1328 9374 32985;32986;32987;32988 49695;49696;49697;49698;49699;49700 49695 6 NSSTPGLQVPVSPTVPIQNQK GSVEQGHGNNQDLTRNSSTPGLQVPVSPTV LQVPVSPTVPIQNQKYVPNSTDSPGPSQIS R N S Q K Y 0 0 2 0 0 3 0 1 0 1 1 1 0 0 4 3 2 0 0 3 0 0 21 0 2190.1644 Q03164;B4E012 Q03164 3025 3045 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 0.034647 68.751 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9121 1438 9375 32989 49701 49701 1 NSSVLEQSFLR AVDEMFSSSYITAIKNSSVLEQSFLRAILA TAIKNSSVLEQSFLRAILAEFRRSGLEEAT K N S L R A 0 1 1 0 0 1 1 0 0 0 2 0 0 1 0 3 0 0 0 1 0 0 11 0 1278.6568 B7Z8H0;Q96F82;A8K794;Q13415 B7Z8H0 764 774 ORC1L;ORC1 Origin recognition complex subunit 1 yes no 2 0.009891 69.979 1 2 0.51484 0.72131 4.1753 3 Median 0.54251 0.7323 NaN 1 0 Median 0.49335 0.69875 4.4942 2 0 Median 26218000 17167000 9050100 3763700 2330300 1433400 22454000 14837000 7616700 9122 630 9376 32990;32991;32992 49702;49703;49704;49705 49703 4 NSSYFVEWIPNNVK SMKEVDEQMLNVQNKNSSYFVEWIPNNVKT KNSSYFVEWIPNNVKTAVCDIPPRGLKMAV K N S V K T 0 0 3 0 0 0 1 0 0 1 0 1 0 1 1 2 0 1 1 2 0 0 14 0 1695.8257 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;Q96B85;B4DXZ5;B4DMJ5;Q6P602;A4UCT2;Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;Q96HX0;B4DFH6;Q9BVA1;Q13885;A0A024QZU2;B2R6L0;O43209;B7Z4N1;Q9UGA2;Q2NKY5;P04350;B4DJ43;B4DE77;Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q9BUF5;K7ESM5;B3KS31;B4DP54;B4E386 Q5JP53 319 332 TUBB;TUBB2C;TUBB4B;TUBB2B;TUBB2A;DKFZp566F223;TUBB6;TUBB4A;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain;Tubulin beta-3 chain;Tubulin beta-6 chain no no 2 0.031972 38.634 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6666600 0 6666600 0 0 0 6666600 0 6666600 9123 1241;1423;1230;1479;416;1528;1716 9377 32993 49706 49706 1 NSTADISIGEEEREDFDTSIESK KMKEKQEKLKEDEQRNSTADISIGEEERED GEEEREDFDTSIESKDTEQKELDQDMVTED R N S S K D 1 1 1 3 0 0 5 1 0 3 0 1 0 1 0 4 2 0 0 0 0 0 23 1 2571.146 D3DS96;Q9NRL2;Q59G54;A0A087WWN7 D3DS96 695 717 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 3 1.9547E-26 140.56 3 1 0.61233 0.78706 19.047 3 Median 0.69154 0.89946 18.878 2 0 Median 0.45767 0.71085 NaN 1 0 Median 23364000 13812000 9552000 12440000 6432300 6007600 10924000 7380000 3544400 9124 979 9378 32994;32995;32996;32997 49707;49708;49709;49710;49711 49707 5 NSTECTLILTEGDSAK KGIPKLDDANDAGGRNSTECTLILTEGDSA STECTLILTEGDSAKTLAVSGLGVVGRDKY R N S A K T 1 0 1 1 1 0 2 1 0 1 2 1 0 0 0 2 3 0 0 0 0 0 16 0 1737.8091 P11388 P11388 451 466 TOP2A DNA topoisomerase 2-alpha yes yes 2 2.3729E-60 228.7 4 2 0.90544 1.1852 8.6184 5 Median 0.91395 1.2113 1.091 3 0 Plateau 0.64995 1.0251 2.0107 2 0 Median 1324500000 733030000 591430000 823370000 425180000 398190000 501090000 307850000 193240000 9125 1256 9379 32998;32999;33000;33001;33002;33003 49712;49713;49714;49715;49716;49717;49718;49719;49720;49721;49722;49723;49724;49725;49726;49727;49728;49729 49713 18 NSVCIIPLR QEHRLGRWWRIKEARNSVCIIPLRRVPVPP RIKEARNSVCIIPLRRVPVPPAAGS_____ R N S L R R 0 1 1 0 1 0 0 0 0 2 1 0 0 0 1 1 0 0 0 1 0 0 9 0 1070.5906 O43818 O43818 457 465 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 5.6483E-05 153.04 4 2 0.76869 1.0293 25.903 6 Median 0.81815 1.096 6.5889 4 0 Median 0.44374 0.66334 8.6256 2 0 Median 137920000 79798000 58127000 106040000 57634000 48404000 31887000 22164000 9723600 9126 1188 9380 33004;33005;33006;33007;33008;33009 49730;49731;49732;49733;49734;49735;49736;49737;49738;49739;49740;49741 49731 12 NSVCIIPLRR QEHRLGRWWRIKEARNSVCIIPLRRVPVPP IKEARNSVCIIPLRRVPVPPAAGS______ R N S R R V 0 2 1 0 1 0 0 0 0 2 1 0 0 0 1 1 0 0 0 1 0 0 10 1 1226.6918 O43818 O43818 457 466 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 3 0.032301 23.373 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9127 1188 9381 33010 49742 49742 1 NSVERPAEPVAGAATPSLVEQQK TVDDLPNRMCADVRRNSVERPAEPVAGAAT PVAGAATPSLVEQQKMLEELNKQIEEQKRQ R N S Q K M 4 1 1 0 0 2 3 1 0 0 1 1 0 0 3 2 1 0 0 3 0 0 23 1 2377.2238 Q9BTC0 Q9BTC0 1455 1477 DIDO1 Death-inducer obliterator 1 yes yes 3 7.526E-20 131.35 2 2 0.65083 0.91051 25.91 4 Median 0.86748 1.1308 5.8668 2 0 Median 0.47546 0.72846 6.7689 2 0 Median 29864000 17869000 11995000 11954000 6606700 5347000 17911000 11263000 6648200 9128 1713 9382 33011;33012;33013;33014 49743;49744;49745;49746;49747;49748 49743 6 NSVQTPVENSTNSQHQVK PKELGCDRQSEEQMKNSVQTPVENSTNSQH QTPVENSTNSQHQVKEALPVSLPQIPCLSS K N S V K E 0 0 3 0 0 3 1 0 1 0 0 1 0 0 1 3 2 0 0 3 0 0 18 0 1995.961 Q8TDR3;Q8NEH0;Q8IYV2;Q9UHI6;E9PJ60 Q8TDR3 548 565 DDX20 Probable ATP-dependent RNA helicase DDX20 yes no 2;3 0.00011964 103.87 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5508400 5508400 0 5508400 5508400 0 0 0 0 9129 1630 9383 33015;33016;33017 49749;49750;49751 49749 3 NSVSQISVLSGGK EGGTAAGAGLDSLHKNSVSQISVLSGGKAK HKNSVSQISVLSGGKAKCSQFCTTGMDGGM K N S G K A 0 0 1 0 0 1 0 2 0 1 1 1 0 0 0 4 0 0 0 2 0 0 13 0 1274.683 A4D275;O15143 A4D275 327 339 ARPC1B Actin-related protein 2/3 complex subunit 1B yes no 2 0.00047641 68.515 4 1.026 1.3012 5.1473 4 Median 1.026 1.3012 5.1473 4 0 Median NaN NaN NaN 0 0 Median 19672000 9758600 9913400 19672000 9758600 9913400 0 0 0 9130 552 9384 33018;33019;33020;33021 49752;49753;49754;49755;49756 49756 5 NSVTPDMMEEMYK EDEDAYKKQFSQYIKNSVTPDMMEEMYKKA IKNSVTPDMMEEMYKKAHAAIRENPVYEKK K N S Y K K 0 0 1 1 0 0 2 0 0 0 0 1 3 0 1 1 1 0 1 1 0 0 13 0 1573.6463 A2RUM7;P46777;B3KTM6 A2RUM7 229 241 RPL5 60S ribosomal protein L5 yes no 2 2.3438E-05 79.201 2 0.49506 0.79096 3.016 2 Median NaN NaN NaN 0 0 Median 0.49506 0.79096 3.016 2 0 Median 97558000 65027000 32531000 0 0 0 97558000 65027000 32531000 9131 540 9385 33022;33023 49757;49758;49759;49760 49757 187;188;189 4 NSVTPDMMEEMYKK EDEDAYKKQFSQYIKNSVTPDMMEEMYKKA KNSVTPDMMEEMYKKAHAAIRENPVYEKKP K N S K K A 0 0 1 1 0 0 2 0 0 0 0 2 3 0 1 1 1 0 1 1 0 0 14 1 1701.7412 A2RUM7;P46777;B3KTM6 A2RUM7 229 242 RPL5 60S ribosomal protein L5 yes no 3 0.00047488 49.188 1 0.48608 0.76773 NaN 1 Median NaN NaN NaN 0 0 Median 0.48608 0.76773 NaN 1 0 Median 15833000 10819000 5014500 0 0 0 15833000 10819000 5014500 9132 540 9386 33024 49761 49761 187;188;189 1 NSYHPECLGPNYPTKPTK QHQATKQLLECNKCRNSYHPECLGPNYPTK HPECLGPNYPTKPTKKKKVWICTKCVRCKS R N S T K K 0 0 2 0 1 0 1 1 1 0 1 2 0 0 4 1 2 0 2 0 0 0 18 1 2101.9891 Q03164;H7BYJ6;Q8NI11;Q6TU33;Q8TD97;Q9HB81 Q03164 1503 1520 KMT2A;AF-9/MLL fusion Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 3 4.6852E-19 145.99 1 0.87373 1.0616 NaN 1 Median 0.87373 1.0616 NaN 1 0 Median NaN NaN NaN 0 0 Median 3760500 2117300 1643200 3760500 2117300 1643200 0 0 0 9133 1438 9387 33025 49762;49763 49762 2 NSYVAGQYDDAASYQR ATPEEKLKLEDFFARNSYVAGQYDDAASYQ SYVAGQYDDAASYQRLNSHMNALHLGSQAN R N S Q R L 3 1 1 2 0 2 0 1 0 0 0 0 0 0 0 2 0 0 3 1 0 0 16 0 1806.7809 E9PD92;E7EM57;E7EUI8;Q2VF42;Q2Q9H2;B4DYA7;A8K8D9;P11413;Q0PHS1;Q2Q9B7;Q0PHS5 E9PD92 105 120 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 2 1.921E-25 176.99 3 2 0.35059 0.4859 43.359 3 Median 0.35059 0.4859 43.359 3 0 Median NaN NaN NaN 0 0 Median 13543000 5723900 7819200 8500300 5723900 2776300 5042900 0 5042900 9134 640 9388 33026;33027;33028;33029;33030 49764;49765;49766;49767;49768;49769;49770;49771 49765 8 NTAAVLEAAQELLR VWPVLRERAGAPGARNTAAVLEAAQELLRN RNTAAVLEAAQELLRNRPISLGHVVVAPPG R N T L R N 4 1 1 0 0 1 2 0 0 0 3 0 0 0 0 0 1 0 0 1 0 0 14 0 1497.8151 Q9BVQ7 Q9BVQ7 127 140 SPATA5L1 Spermatogenesis-associated protein 5-like protein 1 yes yes 2 7.7676E-06 122.34 4 0.62013 0.86581 16.388 2 Median 0.62013 0.86581 16.388 2 0 Median NaN NaN NaN 0 0 Median 7563100 4605300 2957800 7563100 4605300 2957800 0 0 0 9135 1720 9389 33031;33032;33033;33034 49772;49773;49774;49775;49776;49777 49773 6 NTAGAQPQDDSIGGR RPNNNPGGSLRRSQRNTAGAQPQDDSIGGR NTAGAQPQDDSIGGRSCSSSSAVIVPQPED R N T G R S 2 1 1 2 0 2 0 3 0 1 0 0 0 0 1 1 1 0 0 0 0 0 15 0 1485.6808 Q14669;G5E9G6;F8W9P3;C9JLJ5;C9JSX9;C9JLD7;B4DYJ6 Q14669 19 33 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 2 0.0021973 57.106 1 0.4577 0.60045 NaN 1 Median NaN NaN NaN 0 0 Median 0.4577 0.60045 NaN 1 0 Median 3154400 2100400 1054000 0 0 0 3154400 2100400 1054000 9136 1489 9390 33035 49778 49778 1 NTAPDNGPILLQAQTTQR CTVKLWPLPKALLSKNTAPDNGPILLQAQT PDNGPILLQAQTTQRCHDKDINSVAIAPND K N T Q R C 2 1 2 1 0 3 0 1 0 1 2 0 0 0 2 0 3 0 0 0 0 0 18 0 1936.9967 Q12788;J3KNP2;A0JLS5 Q12788 459 476 TBL3 Transducin beta-like protein 3 no no 2 5.1108E-32 178.68 5 1 0.83523 1.1101 5.0911 5 Median 0.90384 1.197 5.1703 4 0 Linear 0.66017 1.0688 NaN 1 0 Median 102700000 58094000 44606000 61590000 32761000 28829000 41110000 25333000 15777000 9137 1456 9391 33036;33037;33038;33039;33040;33041 49779;49780;49781;49782;49783;49784;49785;49786;49787;49788;49789;49790 49781 12 NTCEAVVLGTLHPR GLPGVAEKSRERLIRNTCEAVVLGTLHPRT RNTCEAVVLGTLHPRTSITVVLQVVSDAGS R N T P R T 1 1 1 0 1 0 1 1 1 0 2 0 0 0 1 0 2 0 0 2 0 0 14 0 1565.7984 Q9NQT4;B2RC50;M0R050 Q9NQT4 100 113 EXOSC5 Exosome complex component RRP46 yes no 2;3 0.0094087 92.792 2 0.56773 0.79482 NaN 1 Median 0.56773 0.79482 NaN 1 0 Median NaN NaN NaN 0 0 Median 5495400 4646400 849010 5495400 4646400 849010 0 0 0 9138 1753 9392 33042;33043 49791;49792 49791 1 NTDEMVELR PAEDMEEEQAFKRSRNTDEMVELRILLQSK AFKRSRNTDEMVELRILLQSKNAGAVIGKG R N T L R I 0 1 1 1 0 0 2 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 9 0 1105.5074 A0A024R228;P61978;B4DUQ1;Q5EC54;Q5T6W2;B4DFF1;S4R457 A0A024R228 38 46 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 2 0.00033624 92.439 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13317000 0 13317000 0 0 0 13317000 0 13317000 9139 77 9393 33044;33045;33046 49793;49794;49795 49794 43 3 NTDNSEDSRAEDNFNLEK VASVFANADKGDDEKNTDNSEDSRAEDNFN NSEDSRAEDNFNLEKEKEDVPVEMSNGEPG K N T E K E 1 1 4 3 0 0 3 0 0 0 1 1 0 1 0 2 1 0 0 0 0 0 18 1 2096.8883 Q86U86;E7EVG2;Q9NUX9 Q86U86 1112 1129 PBRM1 Protein polybromo-1 yes no 3 0.00045021 79.326 2 0.52525 0.69327 8.467 2 Median 0.52525 0.69327 8.467 2 0 Median NaN NaN NaN 0 0 Median 13818000 8999400 4818200 13818000 8999400 4818200 0 0 0 9140 1620 9394 33047;33048 49796;49797;49798;49799 49796 4 NTEIGFLQDALSK TRFEMKIIDISDVFRNTEIGFLQDALSKPH FRNTEIGFLQDALSKPHGTVKAICIPEGAK R N T S K P 1 0 1 1 0 1 1 1 0 1 2 1 0 1 0 1 1 0 0 0 0 0 13 0 1434.7355 A8K4A8;A0A024R8Z9;Q6PI48;Q9NVT8;Q9H9J7 A8K4A8 350 362 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 2 0.0032125 103.43 2 1 0.43152 0.57 41.518 3 Median 0.40689 0.53247 9.6316 2 0 Median 0.76455 1.0824 NaN 1 0 Median 13833000 8147800 5685600 7693800 4866600 2827200 6139700 3281200 2858400 9141 209 9395 33049;33050;33051 49800;49801;49802 49800 1 NTELAVFHDETEIQNQTDLLSLSGK LLKLKSVVTSIFGVKNTELAVFHDETEIQN TEIQNQTDLLSLSGKTLCVTAGSAPSLINS K N T G K T 1 0 2 2 0 2 3 1 1 1 4 1 0 1 0 2 3 0 0 1 0 0 25 0 2801.3719 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;B4DVX2;Q7L4K8;Q9P1N9 Q59G75 1143 1167 IARS;DKFZp686L0869 Isoleucine--tRNA ligase, cytoplasmic yes no 3 7.9885E-58 180.68 4 0.466 0.59364 7.7154 4 Median 0.466 0.59364 7.7154 4 0 Median NaN NaN NaN 0 0 Median 81372000 53728000 27644000 81372000 53728000 27644000 0 0 0 9142 1334 9396 33052;33053;33054;33055 49803;49804;49805;49806;49807;49808;49809;49810;49811 49804 9 NTETALDNKPCGPQCYQHLEGAK CNYSFHATPNTYKRKNTETALDNKPCGPQC KPCGPQCYQHLEGAKEFAAALTAERIKTPP K N T A K E 2 0 2 1 2 2 2 2 1 0 2 2 0 0 2 0 2 0 1 0 0 0 23 1 2630.1853 A0A090N8E9;Q15910;S4S3R8;Q75MP9;Q75MQ0;F2YMM1;B7Z8K5 A0A090N8E9 315 337 EZH2 Histone-lysine N-methyltransferase EZH2 yes no 3 8.9284E-40 172.83 4 2 0.70616 0.91647 7.6042 6 Median 0.77739 0.95221 9.2829 4 0 Median 0.58189 0.89796 3.611 2 0 Median 117780000 62583000 55196000 105200000 55446000 49755000 12578000 7136300 5441400 9143 381 9397 33056;33057;33058;33059;33060;33061 49812;49813;49814;49815;49816;49817;49818;49819;49820;49821;49822;49823;49824;49825 49814 14 NTGESASQLLDAETAER ESRISELTSELTDERNTGESASQLLDAETA GESASQLLDAETAERLRAEKEMKELQTQYD R N T E R L 3 1 1 1 0 1 3 1 0 0 2 0 0 0 0 2 2 0 0 0 0 0 17 0 1790.8282 A0A0D9SFK2;A0A024QZ63;Q92614;B4DYM1;B4E0T8;B4DZ32 A0A0D9SFK2 1302 1318 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 2 2.9131E-25 170.79 2 0.55598 0.77119 6.5009 2 Median 0.55598 0.77119 6.5009 2 0 Median NaN NaN NaN 0 0 Median 6495200 3731500 2763700 6495200 3731500 2763700 0 0 0 9144 6 9398 33062;33063 49826;49827;49828 49826 3 NTGIICTIGPASR HMCRLDIDSPPITARNTGIICTIGPASRSV ARNTGIICTIGPASRSVETLKEMIKSGMNV R N T S R S 1 1 1 0 1 0 0 2 0 3 0 0 0 0 1 1 2 0 0 0 0 0 13 0 1358.6976 V9HWB8;P14618;B4DNK4;H3BTN5;A0A024R5Z9;B4DRT3;A0A024R609;H3BQ34;H3BT25;H3BUW1;H3BTJ2;H3BU13 V9HWB8 44 56 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 2 2.3605E-06 138.42 2 1 0.72633 0.96886 107.39 3 Median 0.70733 0.95275 2.37 2 0 Median 4.2114 6.1195 NaN 1 0 Median 35772000 16431000 19341000 23462000 13607000 9854800 12311000 2824500 9486200 9145 1267 9399 33064;33065;33066 49829;49830;49831;49832 49829 4 NTGVILANDANAER CAPGGKTSYMAQLMKNTGVILANDANAERL KNTGVILANDANAERLKSVVGNLHRLGVTN K N T E R L 3 1 3 1 0 0 1 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 14 0 1456.727 P46087 P46087 408 421 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 4.6652E-55 229.68 4 2 0.66937 0.92123 13.128 6 Median 0.74796 1.0225 12.849 4 0 Median 0.53242 0.86953 0.53879 2 0 Median 562290000 335730000 226560000 381390000 222470000 158920000 180890000 113260000 67639000 9146 1343 9400 33067;33068;33069;33070;33071;33072 49833;49834;49835;49836;49837;49838;49839;49840;49841;49842;49843;49844;49845 49840 13 NTHATTHNAYDLEVIDIFK DRDSEEAEIIRKYVKNTHATTHNAYDLEVI TTHNAYDLEVIDIFKIEREGECQRYKPFKQ K N T F K I 2 0 2 2 0 0 1 0 2 2 1 1 0 1 0 0 3 0 1 1 0 0 19 0 2201.0753 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 820 838 PARP1 Poly [ADP-ribose] polymerase 1 yes no 3;4 1.7719E-54 162.85 6 3 1.0649 1.3641 46.59 9 Median 1.0978 1.4085 3.885 6 0 Median 0.40767 0.65377 24.627 3 0 Median 573910000 316400000 257520000 404810000 197590000 207220000 169100000 118800000 50297000 9147 107 9401 33073;33074;33075;33076;33077;33078;33079;33080;33081 49846;49847;49848;49849;49850;49851;49852;49853;49854;49855;49856;49857;49858;49859;49860;49861;49862;49863 49855 18 NTIEMQAITALAHLR VVDTPGILDHPLEDRNTIEMQAITALAHLR NTIEMQAITALAHLRAAVLYVMDLSEQCGH R N T L R A 3 1 1 0 0 1 1 0 1 2 2 0 1 0 0 0 2 0 0 0 0 0 15 0 1680.8981 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;B4DHR2;O60747 Q53GS0 234 248 GTPBP4 Nucleolar GTP-binding protein 1 yes no 3 5.0695E-19 128.73 1 2 0.56896 0.91222 12.396 3 Median 0.69876 0.94334 NaN 1 0 Median 0.52289 0.82708 13.856 2 0 Median 73008000 46972000 26036000 3855400 2561800 1293600 69153000 44410000 24743000 9148 975 9402;9403 33082;33083;33084 49864;49865;49866;49867;49868 49866 350 5 NTLCAPEVISLINTR YLHGDDHQDSDEFCRNTLCAPEVISLINTR NTLCAPEVISLINTRMLFWACSTNKPEGYR R N T T R M 1 1 2 0 1 0 1 0 0 2 2 0 0 0 1 1 2 0 0 1 0 0 15 0 1699.8927 Q96CS3 Q96CS3 191 205 FAF2 FAS-associated factor 2 yes yes 2 0.00042534 111.31 2 0.37874 0.51529 2.0402 2 Median 0.37874 0.51529 2.0402 2 0 Median NaN NaN NaN 0 0 Median 11807000 8999000 2808100 11807000 8999000 2808100 0 0 0 9149 1683 9404 33085;33086 49869;49870;49871 49869 3 NTLQLHR HHTIGGSRRAAWRRRNTLQLHRYR______ RRAAWRRRNTLQLHRYR_____________ R N T H R Y 0 1 1 0 0 1 0 0 1 0 2 0 0 0 0 0 1 0 0 0 0 0 7 0 880.4879 A0A024R2Q4;P61313;B4DLP4 A0A024R2Q4 196 202 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 2 0.0002388 139.92 5 3 0.75563 1.0371 8.3957 6 Median 0.75749 1.0437 6.024 5 0 Median 0.53436 0.87081 NaN 1 0 Median 1870500000 1078600000 791850000 1656300000 937050000 719210000 214200000 141560000 72646000 9150 92 9405 33087;33088;33089;33090;33091;33092;33093;33094 49872;49873;49874;49875;49876;49877;49878;49879;49880;49881;49882;49883 49883 12 NTNAAEESLPEIQK AELKSLEDKAAEVVKNTNAAEESLPEIQKE KNTNAAEESLPEIQKEHRNLLQELKVIQEN K N T Q K E 2 0 2 0 0 1 3 0 0 1 1 1 0 0 1 1 1 0 0 0 0 0 14 0 1542.7526 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 975 988 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 8.3208E-74 254.07 4 2 0.67953 0.93337 5.9091 6 Median 0.7044 0.9196 3.4067 4 0 Median 0.64093 1.0112 1.4347 2 0 Median 1022100000 605510000 416550000 575300000 333950000 241350000 446750000 271550000 175200000 9151 1760 9406 33095;33096;33097;33098;33099;33100 49884;49885;49886;49887;49888;49889;49890;49891;49892;49893;49894 49884 11 NTNAGAPPGTAYQSPLPLSR ENPKSVHKSWDIFFRNTNAGAPPGTAYQSP APPGTAYQSPLPLSRGSLAAVAHAQSLVEA R N T S R G 3 1 2 0 0 1 0 2 0 0 2 0 0 0 4 2 2 0 1 0 0 0 20 0 2011.0123 B4DF00;E9PDF2;E9PCR7;Q02218;A0A0D9SFS3;A0A140VJQ5;C9J4G7 B4DF00 22 41 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 2 0.0013488 63.31 2 0.5644 0.76346 NaN 1 Median 0.5644 0.76346 NaN 1 0 Median NaN NaN NaN 0 0 Median 4071000 2559300 1511600 4071000 2559300 1511600 0 0 0 9152 800 9407 33101;33102 49895;49896 49896 2 NTNPNFVR QLYKEQLAKLMATLRNTNPNFVRCIIPNHE KLMATLRNTNPNFVRCIIPNHEKKAGKLDP R N T V R C 0 1 3 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 8 0 960.47773 A0A024R1N1;P35579;Q86XU5;B4E3S1;A0A0U4BW16;P35580 A0A024R1N1 663 670 MYH9;MYH10 Myosin-9;Myosin-10 no no 2 3.3663E-05 135.84 4 0.89034 1.2113 6.7114 4 Median 0.89034 1.2113 6.7114 4 0 Median NaN NaN NaN 0 0 Median 277770000 147650000 130110000 277770000 147650000 130110000 0 0 0 9153 61;490;1320 9408 33103;33104;33105;33106 49897;49898;49899;49900;49901;49902;49903 49902 7 NTPLLGQALTIASK SQTPYAFTSSSMLRRNTPLLGQALTIASKH RNTPLLGQALTIASKHHQIVKMDLRSRYLD R N T S K H 2 0 1 0 0 1 0 1 0 1 3 1 0 0 1 1 2 0 0 0 0 0 14 0 1425.8191 Q96H22;H3BRU7 Q96H22 171 184 CENPN Centromere protein N yes no 2 0.0027782 91.307 1 2 0.46569 0.69679 23.547 2 Median NaN NaN NaN 0 0 Median 0.46569 0.69679 23.547 2 0 Median 16141000 10813000 5327600 0 0 0 16141000 10813000 5327600 9154 1687 9409 33107;33108;33109 49904;49905;49906;49907 49907 4 NTPSQHSHSIQHSPER SCSDAPMLSTVHSAKNTPSQHSHSIQHSPE TPSQHSHSIQHSPERSGSGSVGNGSSRYSP K N T E R S 0 1 1 0 0 2 1 0 3 1 0 0 0 0 2 4 1 0 0 0 0 0 16 0 1840.8565 Q6DCA8;E9PK09;E9PQN2;E9PKI6;E9PK91;Q9NYF8;E9PJA7 Q6DCA8 256 271 BCLAF1 Bcl-2-associated transcription factor 1 yes no 3 0.00037979 85.28 1 0.8852 1.144 NaN 1 Median 0.8852 1.144 NaN 1 0 Median NaN NaN NaN 0 0 Median 558540 267690 290850 558540 267690 290850 0 0 0 9155 1036 9410 33110 49908 49908 1 NTRLEIYVVTAEGLRPVK GHFTSAEDLNLLIAKNTRLEIYVVTAEGLR LEIYVVTAEGLRPVKEVGMYGKIAVMELFR K N T V K E 1 2 1 0 0 0 2 1 0 1 2 1 0 0 1 0 2 0 1 3 0 0 18 2 2057.1633 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5;F5GZY8;F5GYG8;F5H198 Q16531 36 53 DDB1 DNA damage-binding protein 1 yes no 3 0.0014961 53.519 3 0.87046 1.0469 9.6888 3 Median 0.87046 1.0469 9.6888 3 0 Median NaN NaN NaN 0 0 Median 52731000 26218000 26513000 52731000 26218000 26513000 0 0 0 9156 1520 9411 33111;33112;33113 49909;49910;49911;49912;49913 49913 4 NTSEESSLLTSELR KLIVPSPDVLKAGNKNTSEESSLLTSELRS KNTSEESSLLTSELRSKREQYKQAFPSQLK K N T L R S 0 1 1 0 0 0 3 0 0 0 3 0 0 0 0 4 2 0 0 0 0 0 14 0 1564.758 Q9UIF8;Q3B7K5;A0A0A0MR97 Q9UIF8 415 428 BAZ2B Bromodomain adjacent to zinc finger domain protein 2B yes no 2 0.0086873 46.592 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4143500 0 4143500 0 0 0 4143500 0 4143500 9157 1785 9412 33114;33115 49914;49915 49915 2 NTSVVDSEPVR EQTRSGAPWFKKPLKNTSVVDSEPVRFTVK KPLKNTSVVDSEPVRFTVKVTGEPKPEITW K N T V R F 0 1 1 1 0 0 1 0 0 0 0 0 0 0 1 2 1 0 0 3 0 0 11 0 1201.5939 B4DDI0;H7BXY5;D3DQ79;Q0ZGT2 B4DDI0 303 313 NEXN Nexilin yes no 2 0.0063744 53.683 1 1.7472 2.3292 NaN 1 Median 1.7472 2.3292 NaN 1 0 Median NaN NaN NaN 0 0 Median 7046400 2093800 4952600 7046400 2093800 4952600 0 0 0 9158 794 9413 33116 49916 49916 1 NTTGSTIAEIR AIKGTMTEIYNDLSKNTTGSTIAEIRRLRI DLSKNTTGSTIAEIRRLRIEIEKLQWLHQQ K N T I R R 1 1 1 0 0 0 1 1 0 2 0 0 0 0 0 1 3 0 0 0 0 0 11 0 1161.599 A0A087WYS3;H7C4X9;Q9ULU4 A0A087WYS3 824 834 ZMYND8 Protein kinase C-binding protein 1 yes no 2 0.003718 58.37 1 0.54204 0.71324 NaN 1 Median 0.54204 0.71324 NaN 1 0 Median NaN NaN NaN 0 0 Median 8511500 5501500 3010100 8511500 5501500 3010100 0 0 0 9159 365 9414 33117 49917;49918 49918 2 NTTGVTEEALK GMRMQHNLEQQIQARNTTGVTEEALKEFSM IQARNTTGVTEEALKEFSMMFKHFDKDKSG R N T L K E 1 0 1 0 0 0 2 1 0 0 1 1 0 0 0 0 3 0 0 1 0 0 11 0 1161.5877 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16 Q13813 2316 2326 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.0036724 58.592 2 0.8145 0.99207 4.3887 2 Median 0.8145 0.99207 4.3887 2 0 Median NaN NaN NaN 0 0 Median 50777000 25635000 25142000 50777000 25635000 25142000 0 0 0 9160 1476 9415 33118;33119 49919;49920 49920 1 NTTQNTGYSSGTQNANYPVR SIGPGLPKNSRPTRRNTTQNTGYSSGTQNA TGYSSGTQNANYPVRAAPPPPGYHQNGVIR R N T V R A 1 1 4 0 0 2 0 2 0 0 0 0 0 0 1 2 4 0 2 1 0 0 20 0 2171.9832 Q4KMR3;Q12965 Q4KMR3 934 953 MYO1E Unconventional myosin-Ie yes no 2 2.8964E-63 217.68 5 0.51765 0.69515 8.9407 3 Median 0.51765 0.69515 8.9407 3 0 Median NaN NaN NaN 0 0 Median 37062000 25095000 11967000 37062000 25095000 11967000 0 0 0 9161 1459 9416 33120;33121;33122;33123;33124 49921;49922;49923;49924;49925;49926;49927;49928 49922 8 NTTYDLIANIVHDGKPSEGSYR DLREYLSEEVQAVHKNTTYDLIANIVHDGK ANIVHDGKPSEGSYRIHVLHHIWKRRDNDE K N T Y R I 1 1 2 2 0 0 1 2 1 2 1 1 0 0 1 2 2 0 2 1 0 0 22 1 2449.1874 B9A018;Q53GS9;B7Z7L9;A0A087X1B2;B3KPG7;B3KMG1 B9A018 494 515 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 3 3.1733E-13 116.69 4 0.70945 0.9443 18.015 4 Median 0.70945 0.9443 18.015 4 0 Median NaN NaN NaN 0 0 Median 52840000 27430000 25410000 52840000 27430000 25410000 0 0 0 9162 926 9417 33125;33126;33127;33128 49929;49930;49931;49932;49933;49934;49935;49936 49931 8 NTVEITELPVR QNQYAVSGEIFVVDRNTVEITELPVRTWTQ VVDRNTVEITELPVRTWTQVYKEQVLEPML R N T V R T 0 1 1 0 0 0 2 0 0 1 1 0 0 0 1 0 2 0 0 2 0 0 11 0 1269.6929 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80;Q6W6M6 Q71UH4 912 922 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 9.5759E-19 196.79 3 2 0.71768 0.98709 6.0104 5 Median 0.72225 0.98055 6.7467 3 0 Median 0.64517 1.037 6.9802 2 0 Median 216930000 128130000 88800000 119580000 70087000 49493000 97355000 58048000 39307000 9163 1437 9418 33129;33130;33131;33132;33133 49937;49938;49939;49940;49941;49942;49943;49944;49945 49938 9 NTVLQQHLETLR AVEKLEVDVIQERSRNTVLQQHLETLRQVL RSRNTVLQQHLETLRQVLTSSFASMPLPGS R N T L R Q 0 1 1 0 0 2 1 0 1 0 3 0 0 0 0 0 2 0 0 1 0 0 12 0 1450.7892 B4DMG1;Q9NP66;H0YKL0 B4DMG1 165 176 HMG20A High mobility group protein 20A yes no 3 7.9519E-05 79.492 2 0.84296 1.2223 5.8848 2 Median NaN NaN NaN 0 0 Median 0.84296 1.2223 5.8848 2 0 Median 15293000 8159000 7133800 0 0 0 15293000 8159000 7133800 9164 832 9419 33134;33135 49946;49947;49948;49949 49947 4 NVAADIAVQLCESVANK MESVLDKMRDHLIAKNVAADIAVQLCESVA AADIAVQLCESVANKLEGKVMGTFSTVTST K N V N K L 4 0 2 1 1 1 1 0 0 1 1 1 0 0 0 1 0 0 0 3 0 0 17 0 1800.904 A0A024R3M0;P08240 A0A024R3M0 129 145 SRPR Signal recognition particle receptor subunit alpha yes no 2 3.6019E-23 172.57 4 0.47576 0.60895 19.587 2 Median 0.47576 0.60895 19.587 2 0 Median NaN NaN NaN 0 0 Median 10376000 8054500 2321500 10376000 8054500 2321500 0 0 0 9165 102 9420 33136;33137;33138;33139 49950;49951;49952;49953 49950 4 NVADDTRSEDLRR MSRYLRPPNTSLFVRNVADDTRSEDLRREF VRNVADDTRSEDLRREFGRYGPIVDVYVPL R N V R R E 1 3 1 3 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 13 2 1545.7495 Q5JRI1;Q53GD7;A0A0S2Z504;O75494;Q6IQ42 Q5JRI1 16 28 SRSF10;FUSIP1 Serine/arginine-rich splicing factor 10 yes no 3 0.002085 38.799 2 0.47818 0.59137 1.5572 2 Median 0.47818 0.59137 1.5572 2 0 Median NaN NaN NaN 0 0 Median 35253000 23493000 11760000 35253000 23493000 11760000 0 0 0 9166 474 9421 33140;33141 49954;49955;49956 49955 3 NVAIFTAGQESPIILR NFPTSSIAFLGQNERNVAIFTAGQESPIIL VAIFTAGQESPIILRDGNGTIYPMAKDCMG R N V L R D 2 1 1 0 0 1 1 1 0 3 1 0 0 1 1 1 1 0 0 1 0 0 16 0 1727.957 E7EMW7;O95071 E7EMW7 792 807 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 2 1.3796E-08 122.39 2 0.40332 0.56988 NaN 1 Median 0.40332 0.56988 NaN 1 0 Median NaN NaN NaN 0 0 Median 4509100 3935300 573790 4509100 3935300 573790 0 0 0 9167 1008 9422 33142;33143 49957;49958 49957 2 NVALLSQLYHSPAR EPITVKFAANPNQNKNVALLSQLYHSPARR KNVALLSQLYHSPARRFGGPVHHQAQRFRF K N V A R R 2 1 1 0 0 1 0 0 1 0 3 0 0 0 1 2 0 0 1 1 0 0 14 0 1567.8471 Q15717 Q15717 192 205 ELAVL1 ELAV-like protein 1 yes yes 2 5.2672E-05 96.591 3 0.30797 0.42001 NaN 1 Median 0.30797 0.42001 NaN 1 0 Median NaN NaN NaN 0 0 Median 12506000 8885800 3620200 12506000 8885800 3620200 0 0 0 9168 1515 9423 33144;33145;33146 49959;49960;49961;49962 49959 4 NVASVCLQIGYPTVASVPHSIINGYK ITEETLHSRFLEGVRNVASVCLQIGYPTVA PTVASVPHSIINGYKRVLALSVETDYTFPL R N V Y K R 2 0 2 0 1 1 0 2 1 3 1 1 0 0 2 3 1 0 2 4 0 0 26 0 2786.4425 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VWS0;Q53HK9;F8VW21;F8VU65;F8VZS0;Q6NSF2;B4E3D5;Q3MHV2;F8W1K8 Q53HW2 221 246 RPLP0 60S acidic ribosomal protein P0 yes no 3 1.1091E-23 136.77 3 0.75888 0.95203 8.1124 3 Median 0.75888 0.95203 8.1124 3 0 Median NaN NaN NaN 0 0 Median 43559000 24649000 18910000 43559000 24649000 18910000 0 0 0 9169 281 9424 33147;33148;33149 49963;49964;49965 49963 3 NVDEAINFINER QEEIFGPILPIVPVKNVDEAINFINEREKP PVKNVDEAINFINEREKPLALYVFSHNHKV K N V E R E 1 1 3 1 0 0 2 0 0 2 0 0 0 1 0 0 0 0 0 1 0 0 12 0 1432.6947 J3QRD1;Q59H65;P51648;Q68D64;J3KTD9;I3L2W1 J3QRD1 344 355 ALDH3A2;DKFZp686E23276 Fatty aldehyde dehydrogenase yes no 2 0.0060901 84.289 2 1.3291 1.8062 NaN 1 Median 1.3291 1.8062 NaN 1 0 Median NaN NaN NaN 0 0 Median 13082000 5521400 7560100 13082000 5521400 7560100 0 0 0 9170 1145 9425 33150;33151 49966;49967 49967 2 NVDELSSLQSSADTSSSRPGSR PELMQHVKSTHGVPRNVDELSSLQSSADTS LQSSADTSSSRPGSRVPTEPPATSVAARSS R N V S R V 1 2 1 2 0 1 1 1 0 0 2 0 0 0 1 8 1 0 0 1 0 0 22 1 2279.0626 Q92610 Q92610 920 941 ZNF592 Zinc finger protein 592 yes yes 3 0.0062515 72.421 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2301200 2301200 0 2301200 2301200 0 0 0 0 9171 1672 9426 33152;33153 49968;49969 49969 2 NVDLLSDMVQEHDEPILK EDPKGIPEFWLTVFKNVDLLSDMVQEHDEP LLSDMVQEHDEPILKHLKDIKVKFSDAGQP K N V L K H 0 0 1 3 0 1 2 0 1 1 3 1 1 0 1 1 0 0 0 2 0 0 18 0 2094.0303 F8W118;F8VY35;F8VV59;A0A024RBE6;F5H4R6;H0YIV4;A0A024RBB7;P55209;H0YH88;H0YHC3;F8W020;F8VXI6;F8VUX1;F8W543;B7Z9C2;F8W0J6;B7Z2V4 F8W118 136 153 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 2;3 3.8449E-39 151.44 9 2 0.64731 0.82956 21.904 8 Median 0.69716 0.88742 13.439 6 0 Median 0.42255 0.60516 25.061 2 0 Median 180630000 102830000 77805000 167210000 93984000 73228000 13419000 8842300 4576500 9172 267 9427;9428 33154;33155;33156;33157;33158;33159;33160;33161;33162;33163;33164 49970;49971;49972;49973;49974;49975;49976;49977;49978;49979;49980;49981;49982;49983;49984;49985;49986;49987;49988;49989;49990;49991 49986 109 22 NVDPFHIYFCNLK NTVSQLLESEGWNRRNVDPFHIYFCNLKID RRNVDPFHIYFCNLKIDGALHRELVKRYQE R N V L K I 0 0 2 1 1 0 0 0 1 1 1 1 0 2 1 0 0 0 1 1 0 0 13 0 1665.7973 Q7L0Y3;C9JVB6 Q7L0Y3 237 249 TRMT10C Mitochondrial ribonuclease P protein 1 yes no 3 0.001155 47.429 2 0.45494 0.5916 21.806 2 Median 0.45494 0.5916 21.806 2 0 Median NaN NaN NaN 0 0 Median 6554100 4027100 2527000 6554100 4027100 2527000 0 0 0 9173 1610 9429 33165;33166 49992;49993;49994 49994 3 NVEDFLALTGIESADK KFGKFSVKENKQLEKNVEDFLALTGIESAD VEDFLALTGIESADKLLYTDRYPEEKSVIT K N V D K L 2 0 1 2 0 0 2 1 0 1 2 1 0 1 0 1 1 0 0 1 0 0 16 0 1720.8519 B4DZG2;A0A024R8C1;Q15361;A0A087WY09 B4DZG2 550 565 TTF1 Transcription termination factor 1 yes no 2 1.5646E-29 145.61 4 1 0.77746 1.0047 11.96 3 Median 0.77746 1.0047 11.96 3 0 Median NaN NaN NaN 0 0 Median 38308000 17943000 20365000 32719000 17943000 14776000 5589200 0 5589200 9174 195 9430 33167;33168;33169;33170;33171 49995;49996;49997;49998;49999;50000;50001;50002;50003 49998 9 NVEEIVVK ALIQSDSGDSIEVSRNVEEIVVKIISVFVD DSIEVSRNVEEIVVKIISVFVDALPHVPEH R N V V K I 0 0 1 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 0 3 0 0 8 0 928.52295 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8;Q8N7L7 B2RWN5 1371 1378 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 1;2 0.00080329 124.08 2 0.78488 0.95235 NaN 1 Median 0.78488 0.95235 NaN 1 0 Median NaN NaN NaN 0 0 Median 25600000 14513000 11087000 25600000 14513000 11087000 0 0 0 9175 748 9431 33172;33173 50004;50005 50004 2 NVELFIATSQK DAVPMSLSYEELVRRNVELFIATSQKFVQE LVRRNVELFIATSQKFVQETELSQRIRDWE R N V Q K F 1 0 1 0 0 1 1 0 0 1 1 1 0 1 0 1 1 0 0 1 0 0 11 0 1248.6714 A0A0A6YYG7;Q6IBW4;H0YC55 A0A0A6YYG7 474 484 NCAPH2 Condensin-2 complex subunit H2 yes no 2 0.00032818 123.79 3 0.80233 1.0023 7.3391 3 Median 0.80233 1.0023 7.3391 3 0 Median NaN NaN NaN 0 0 Median 32872000 18406000 14466000 32872000 18406000 14466000 0 0 0 9176 406 9432 33174;33175;33176 50006;50007;50008 50007 3 NVELTEVGPR YISFRHHVYKKTDHRNVELTEVGPRFELKL KTDHRNVELTEVGPRFELKLYMIRLGTLEQ R N V P R F 0 1 1 0 0 0 2 1 0 0 1 0 0 0 1 0 1 0 0 2 0 0 10 0 1112.5826 H0Y714;Q96G21;E7ENR5;B9A008 H0Y714 230 239 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 2 1.2662E-18 131.44 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12099000 0 12099000 12099000 0 12099000 0 0 0 9177 1094 9433 33177;33178;33179;33180 50009;50010;50011;50012 50012 4 NVESGEEELASK WDRREPLSLINVRKRNVESGEEELASKLDH RKRNVESGEEELASKLDHYKAKATRHIFLI R N V S K L 1 0 1 0 0 0 4 1 0 0 1 1 0 0 0 2 0 0 0 1 0 0 12 0 1290.5939 Q96HS1 Q96HS1 77 88 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.00065142 104.82 5 0.70108 0.88485 4.6301 2 Median 0.70108 0.88485 4.6301 2 0 Median NaN NaN NaN 0 0 Median 25593000 12314000 13278000 25593000 12314000 13278000 0 0 0 9178 1688 9434 33181;33182;33183;33184;33185 50013;50014;50015;50016;50017;50018 50016 6 NVETHTGSLIEQLTTEK VVSPFSRGKQNHVLKNVETHTGSLIEQLTT ETHTGSLIEQLTTEKYECMVCCELVRVTAP K N V E K Y 0 0 1 0 0 1 3 1 1 1 2 1 0 0 0 1 4 0 0 1 0 0 17 0 1898.9585 Q12986;A0JLR2 Q12986 339 355 NFX1 Transcriptional repressor NF-X1 yes no 3 0.0018905 30.668 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2418500 2418500 0 2418500 2418500 0 0 0 0 9179 1460 9435 33186 50019 50019 1 NVFIIGATNRPDIIDPAILRPGR INQILTEMDGMSTKKNVFIIGATNRPDIID NRPDIIDPAILRPGRLDQLIYIPLPDEKSR K N V G R L 2 3 2 2 0 0 0 2 0 5 1 0 0 1 3 0 1 0 0 1 0 0 23 2 2517.418 V9HW80;P55072;Q96IF9;Q9NTC4;Q0IIN5;Q9HAP0 V9HW80 616 638 HEL-S-70;VCP;DKFZp434K0126 Transitional endoplasmic reticulum ATPase yes no 3 0.00026589 62.739 3 0.53632 0.64903 22.186 3 Plateau 0.53632 0.64903 22.186 3 0 Plateau NaN NaN NaN 0 0 Median 16695000 11087000 5608800 16695000 11087000 5608800 0 0 0 9180 1376 9436 33187;33188;33189 50020;50021;50022 50021 3 NVFLLGFIPAK PLGETVLECYNCGCRNVFLLGFIPAKADSV CGCRNVFLLGFIPAKADSVVVLLCRQPCAS R N V A K A 1 0 1 0 0 0 0 1 0 1 2 1 0 2 1 0 0 0 0 1 0 0 11 0 1217.7172 A0A024R7L5;A0A024R7L8;Q92900 A0A024R7L5 190 200 UPF1 Regulator of nonsense transcripts 1 yes no 2 0.00034146 93.551 4 0.54096 0.67706 25.519 3 Plateau 0.54096 0.67706 25.519 3 0 Plateau NaN NaN NaN 0 0 Median 19326000 14205000 5121000 19326000 14205000 5121000 0 0 0 9181 180 9437 33190;33191;33192;33193 50023;50024;50025;50026;50027;50028;50029;50030 50026 8 NVFNPEAFKPGNTHK GVLAYARLSHLSDSKNVFNPEAFKPGNTHK NVFNPEAFKPGNTHKCRIIDYSQMDELALL K N V H K C 1 0 3 0 0 0 1 1 1 0 0 2 0 2 2 0 1 0 0 1 0 0 15 1 1698.8478 Q14690;B4DH82;B4DES7 Q14690 404 418 PDCD11 Protein RRP5 homolog yes no 3 0.0011974 41.378 1 0.78352 0.95855 NaN 1 Median 0.78352 0.95855 NaN 1 0 Median NaN NaN NaN 0 0 Median 24807000 12897000 11910000 24807000 12897000 11910000 0 0 0 9182 1494 9438 33194 50031;50032 50031 2 NVFSSSGTSFSGR FNQSPAAFTVGSNGKNVFSSSGTSFSGRKI GKNVFSSSGTSFSGRKIKTAVRRRK_____ K N V G R K 0 1 1 0 0 0 0 2 0 0 0 0 0 2 0 5 1 0 0 1 0 0 13 0 1331.6106 A0A024QZW7;P49790 A0A024QZW7 1453 1465 NUP153 Nuclear pore complex protein Nup153 yes no 2 0.025129 33.89 1 1.5641 2.0999 NaN 1 Median 1.5641 2.0999 NaN 1 0 Median NaN NaN NaN 0 0 Median 1654300 814360 839970 1654300 814360 839970 0 0 0 9183 22 9439 33195 50033 50033 1 NVGIFLK DGPATVLTSVKKKVKNVGIFLKNEDEEEEE TSVKKKVKNVGIFLKNEDEEEEEEEKDEAE K N V L K N 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 1 0 0 7 0 789.47487 Q9Y5B9 Q9Y5B9 427 433 SUPT16H FACT complex subunit SPT16 yes yes 1 0.036478 164.1 1 0.85783 1.1047 NaN 1 Median 0.85783 1.1047 NaN 1 0 Median NaN NaN NaN 0 0 Median 4329800 1983300 2346600 4329800 1983300 2346600 0 0 0 9184 1829 9440 33196 50034 50034 1 NVGIFLKNEDEEEEEEEKDEAEDLLGR DGPATVLTSVKKKVKNVGIFLKNEDEEEEE EEEEEKDEAEDLLGRGSRAALLTERTRNEM K N V G R G 1 1 2 3 0 0 10 2 0 1 3 2 0 1 0 0 0 0 0 1 0 0 27 2 3177.4473 Q9Y5B9 Q9Y5B9 427 453 SUPT16H FACT complex subunit SPT16 yes yes 3 6.5207E-09 88.329 2 0.92813 1.1128 12.025 2 Median 0.92813 1.1128 12.025 2 0 Median NaN NaN NaN 0 0 Median 14064000 6286600 7777200 14064000 6286600 7777200 0 0 0 9185 1829 9441 33197;33198 50035;50036;50037;50038 50036 4 NVGLDIEAEVPAVK EVISKLYAVHQEGNKNVGLDIEAEVPAVKD KNVGLDIEAEVPAVKDMLEAGILDTYLGKY K N V V K D 2 0 1 1 0 0 2 1 0 1 1 1 0 0 1 0 0 0 0 3 0 0 14 0 1452.7824 Q7Z759;Q53HU0;P50990;H7C2U0 Q7Z759 426 439 CCT8 T-complex protein 1 subunit theta yes no 2 0.00016163 96.103 3 0.30808 0.38803 23.965 2 Median 0.30808 0.38803 23.965 2 0 Median NaN NaN NaN 0 0 Median 13264000 10376000 2887800 13264000 10376000 2887800 0 0 0 9186 1359 9442 33199;33200;33201 50039;50040;50041;50042;50043;50044 50043 6 NVGQFSGFPFEK KLLYNRPGTVSSLKKNVGQFSGFPFEKGSV LKKNVGQFSGFPFEKGSVQYKKKEEMLKKF K N V E K G 0 0 1 0 0 1 1 2 0 0 0 1 0 3 1 1 0 0 0 1 0 0 12 0 1355.651 P35659;B4DFG0;D6RDA2;D6R9L5 P35659 126 137 DEK Protein DEK yes no 2 4.2043E-13 134.84 4 2 0.79618 1.0518 6.964 6 Median 0.83745 1.1024 4.94 4 0 Median 0.61315 0.96706 1.5508 2 0 Median 1218800000 698160000 520640000 709630000 377520000 332110000 509160000 320640000 188530000 9187 1322 9443 33202;33203;33204;33205;33206;33207 50045;50046;50047;50048;50049;50050;50051;50052;50053;50054;50055;50056;50057;50058;50059;50060;50061 50049 17 NVIFEISPTEEVGDFEVK GVLLEIEDLQVNQFKNVIFEISPTEEVGDF FEISPTEEVGDFEVKAKFMGVQMETFMLHY K N V V K A 0 0 1 1 0 0 4 1 0 2 0 1 0 2 1 1 1 0 0 3 0 0 18 0 2051.0099 A4QPB0;A0A024RC65;P46940;H0YLE8;B4E2M0;B4DNP4 A4QPB0 1587 1604 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 1.2101E-08 114.7 4 0.54007 0.70133 5.9138 2 Median 0.54007 0.70133 5.9138 2 0 Median NaN NaN NaN 0 0 Median 11864000 5423000 6441200 11864000 5423000 6441200 0 0 0 9188 287 9444 33208;33209;33210;33211 50062;50063;50064;50065;50066 50065 5 NVIFQPVAELK FTTDDSICVLGISKRNVIFQPVAELKKQTD ISKRNVIFQPVAELKKQTDFEHRIPKEQWW R N V L K K 1 0 1 0 0 1 1 0 0 1 1 1 0 1 1 0 0 0 0 2 0 0 11 0 1256.7129 Q01813;O14943;Q8WTZ9;B1APP8;H0Y757;Q49A78 Q01813 726 736 PFKP;PFK-P ATP-dependent 6-phosphofructokinase, platelet type yes no 2 0.014727 53.683 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11721000 0 11721000 0 0 0 11721000 0 11721000 9189 1434 9445 33212;33213 50067;50068 50068 2 NVIHASDSVEGAQR APGTIRGDFSVHISRNVIHASDSVEGAQRE RNVIHASDSVEGAQREIQLWFQSSELVSWA R N V Q R E 2 1 1 1 0 1 1 1 1 1 0 0 0 0 0 2 0 0 0 2 0 0 14 0 1481.7223 A0A087WVT9;Q4TT34;F2Z2X0;O00746 A0A087WVT9 114 127 NME4 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase, mitochondrial yes no 2;3 0.00012172 100.72 2 1 0.67106 0.90365 61.103 2 Median 0.98513 1.392 NaN 1 0 Median 0.45711 0.58662 NaN 1 0 Median 5812800 3106100 2706700 2348900 877710 1471200 3463800 2228400 1235400 9190 351 9446 33214;33215;33216 50069;50070;50071;50072 50069 4 NVIHPFLSR AVHPKDTRYQHLKGKNVIHPFLSRSLPIVF QHLKGKNVIHPFLSRSLPIVFDEFVDMDFG K N V S R S 0 1 1 0 0 0 0 0 1 1 1 0 0 1 1 1 0 0 0 1 0 0 9 0 1081.6033 A0A024RCN6;P26640;A0A140T936 A0A024RCN6 563 571 VARS Valine--tRNA ligase yes no 3 0.045644 24.089 1 0.47093 0.62984 NaN 1 Median 0.47093 0.62984 NaN 1 0 Median NaN NaN NaN 0 0 Median 6022600 3463300 2559300 6022600 3463300 2559300 0 0 0 9191 297 9447 33217 50073 50073 1 NVIISSAAERPLEIR TISSALNLMQICKGKNVIISSAAERPLEIR NVIISSAAERPLEIRGPYDVANLGLLFGLS K N V I R G 2 2 1 0 0 0 2 0 0 3 1 0 0 0 1 2 0 0 0 1 0 0 15 1 1666.9366 P78346;Q5VU11 P78346 184 198 RPP30 Ribonuclease P protein subunit p30 yes no 2 0.045016 33.057 1 0.61497 0.8175 NaN 1 Median 0.61497 0.8175 NaN 1 0 Median NaN NaN NaN 0 0 Median 9284500 6078100 3206400 9284500 6078100 3206400 0 0 0 9192 1425 9448 33218 50074 50074 1 NVIVLQTVLQEVR VLLHQIDVLEDPAIRNVIVLQTVLQEVRNR IRNVIVLQTVLQEVRNRSAPVYKRIRDVTN R N V V R N 0 1 1 0 0 2 1 0 0 1 2 0 0 0 0 0 1 0 0 4 0 0 13 0 1509.8879 F2Z2C0;A8QI98;Q9Y2L1 F2Z2C0 87 99 DIS3 Exosome complex exonuclease RRP44 yes no 2 1.395E-12 125.22 1 0.54149 0.72132 NaN 1 Median 0.54149 0.72132 NaN 1 0 Median NaN NaN NaN 0 0 Median 2134800 1394600 740130 2134800 1394600 740130 0 0 0 9193 662 9449 33219 50075 50075 1 NVIVNGLVLASDGQK LLVLATALFGQPPFKNVIVNGLVLASDGQK NVIVNGLVLASDGQKMSKRKKNYPDPVSII K N V Q K M 1 0 2 1 0 1 0 2 0 1 2 1 0 0 0 1 0 0 0 3 0 0 15 0 1525.8464 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z355;Q7Z3U5;Q6P0M4 Q59G75 603 617 IARS;DKFZp686L17145;DKFZp686L0869 Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.0027438 108.72 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4612200 4612200 0 4612200 4612200 0 0 0 0 9194 1334 9450 33220;33221 50076;50077 50077 2 NVLCSACSGQGGK EDLYNGKTTKLQLSKNVLCSACSGQGGKSG SKNVLCSACSGQGGKSGAVQKCSACRGRGV K N V G K S 1 0 1 0 2 1 0 3 0 0 1 1 0 0 0 2 0 0 0 1 0 0 13 0 1336.5864 A0A024R6S1;O60884;A0A087WT48 A0A024R6S1 140 152 DNAJA2 DnaJ homolog subfamily A member 2 yes no 2 5.8889E-09 137.98 3 1 0.43204 0.56197 76.393 3 Median 0.42967 0.55518 1.7183 2 0 Median 1.553 2.0845 NaN 1 0 Median 18078000 13043000 5034900 16824000 12558000 4265500 1254700 485280 769420 9195 164 9451 33222;33223;33224;33225 50078;50079;50080;50081;50082;50083 50081 6 NVLGLVPQALPK VLPGGTATSPKMIAKNVLGLVPQALPKADG IAKNVLGLVPQALPKADGRAGLGTGGQKVN K N V P K A 1 0 1 0 0 1 0 1 0 0 3 1 0 0 2 0 0 0 0 2 0 0 12 0 1247.7602 Q8N1G0;H0Y5I5;F8WCX2 Q8N1G0 440 451 ZNF687 Zinc finger protein 687 yes no 2 0.007887 102.07 3 2 1.2283 1.8985 55.73 4 Linear 0.50228 0.63344 23.299 2 0 Median 1.071 1.6163 0.63417 2 0 Median 60231000 33375000 26856000 23207000 16655000 6552400 37024000 16720000 20304000 9196 1634 9452 33226;33227;33228;33229;33230 50084;50085;50086;50087;50088;50089;50090;50091 50087 8 NVLIEVNPQTR LNRAGLLQVYIHTQKNVLIEVNPQTRIPRT HTQKNVLIEVNPQTRIPRTFDRFCGLMVQL K N V T R I 0 1 2 0 0 1 1 0 0 1 1 0 0 0 1 0 1 0 0 2 0 0 11 0 1281.7041 A8K6D2;Q92979;B4DQC7;V9GYP5;A0A087WWQ2;B4DP65;A0A087WVM7;A0A0U3B3H7 A8K6D2 115 125 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 2 3.2313E-06 131.52 4 2 0.92213 1.2681 10.038 6 Median 0.94475 1.3043 3.5454 4 0 Median 0.66836 1.0806 1.6267 2 0 Median 332550000 180030000 152520000 219290000 113070000 106230000 113260000 66968000 46293000 9197 623 9453 33231;33232;33233;33234;33235;33236 50092;50093;50094;50095;50096;50097;50098;50099;50100;50101;50102 50098 11 NVLQFTEEK SKENKMDMTSPEQSRNVLQFTEEKEAFISE SPEQSRNVLQFTEEKEAFISEEEIAKYMKR R N V E K E 0 0 1 0 0 1 2 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 9 0 1106.5608 Q96JM3 Q96JM3 681 689 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 2 0.034683 46.457 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2252700 0 2252700 0 0 0 2252700 0 2252700 9198 1690 9454 33237 50103 50103 1 NVPGLAILLSK GQTPGEPAASLSVLKNVPGLAILLSKDALD SVLKNVPGLAILLSKDALDPRQPGYQPPNP K N V S K D 1 0 1 0 0 0 0 1 0 1 3 1 0 0 1 1 0 0 0 1 0 0 11 0 1123.6965 Q9BUL9 Q9BUL9 131 141 RPP25 Ribonuclease P protein subunit p25 yes yes 2 0.0030447 61.65 1 0.64262 0.80935 NaN 1 Median 0.64262 0.80935 NaN 1 0 Median NaN NaN NaN 0 0 Median 2544600 1521400 1023200 2544600 1521400 1023200 0 0 0 9199 1717 9455 33238 50104 50104 1 NVPNLHVMK KKDVHMPKHPELADKNVPNLHVMKAMQSLK PELADKNVPNLHVMKAMQSLKSRGYVKEQF K N V M K A 0 0 2 0 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 2 0 0 9 0 1050.5644 P46783;F6U211;Q59GE4;S4R435;Q9NQ39 P46783 39 47 RPS10;RPS10-NUDT3;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 2 0.0055031 63.565 1 0.88104 1.4129 NaN 1 Median NaN NaN NaN 0 0 Median 0.88104 1.4129 NaN 1 0 Median 31862000 16817000 15045000 0 0 0 31862000 16817000 15045000 9200 1347 9456 33239 50105;50106 50106 587 2 NVPVITGSK WVQKLIIFDCRSRPRNVPVITGSKDLQNVN CRSRPRNVPVITGSKDLQNVNITLRILFRP R N V S K D 0 0 1 0 0 0 0 1 0 1 0 1 0 0 1 1 1 0 0 2 0 0 9 0 913.52328 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0;C9JW96;C9JZ20;E7ESE2;E9PCW0;D6RBK0 Q6PUJ7 75 83 HEL-S-54e;PHB Prohibitin yes no 2 0.0061489 95.815 4 0.58973 0.74286 2.2175 3 Median 0.58973 0.74286 2.2175 3 0 Median NaN NaN NaN 0 0 Median 216500000 143560000 72941000 216500000 143560000 72941000 0 0 0 9201 600 9457 33240;33241;33242;33243 50107;50108;50109;50110 50110 4 NVPYVFVR PLEIILHLPLLCEDKNVPYVFVRSKQALGR PLLCEDKNVPYVFVRSKQALGRACGVSRPV K N V V R S 0 1 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 3 0 0 8 0 992.54435 Q6FHM6;B1AHD1;P55769 Q6FHM6 77 84 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes no 2 0.0059845 86.512 3 2 0.67495 0.93483 13.873 5 Median 0.69959 0.9733 2.892 3 0 Median 0.45845 0.75174 1.5861 2 0 Median 633510000 394830000 238690000 386220000 228250000 157970000 247290000 166580000 80714000 9202 670 9458 33244;33245;33246;33247;33248 50111;50112;50113;50114;50115;50116;50117;50118;50119 50116 9 NVQALEIELQSQLALK EQISSYKSEITELRRNVQALEIELQSQLAL VQALEIELQSQLALKQSLEASLAETEGRYC R N V L K Q 2 0 1 0 0 3 2 0 0 1 4 1 0 0 0 1 0 0 0 1 0 0 16 0 1796.0044 CON__P13645;P13645 CON__P13645 371 386 KRT10 Keratin, type I cytoskeletal 10 yes no 2 8.3129E-131 331.92 5 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 428740000 428740000 0 284080000 284080000 0 144660000 144660000 0 + 9203 960 9459 33249;33250;33251;33252;33253;33254;33255;33256;33257 50120;50121;50122;50123;50124;50125;50126;50127;50128;50129;50130;50131 50123 12 NVQDAIADAEQR QRLQGEIAHVKKQCKNVQDAIADAEQRGEH QCKNVQDAIADAEQRGEHALKDARNKLNDL K N V Q R G 3 1 1 2 0 2 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 12 0 1328.6321 CON__P35908;P35908 CON__P35908 425 436 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2 0.0084862 54.486 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8108300 8108300 0 0 0 0 8108300 8108300 0 + 9204 964 9460 33258 50132 50132 1 NVQDAIADAEQRGEHALK QRLQGEIAHVKKQCKNVQDAIADAEQRGEH DAIADAEQRGEHALKDARNKLNDLEEALQQ K N V L K D 4 1 1 2 0 2 2 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 18 1 1963.9712 CON__P35908;P35908 CON__P35908 425 442 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 3 2.6634E-09 91.475 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 278090000 278090000 0 145120000 145120000 0 132970000 132970000 0 + 9205 964 9461 33259;33260;33261;33262;33263 50133;50134;50135;50136;50137 50134 5 NVQGIIEILK PHYFWPLLVGRRKEKNVQGIIEILKGMQEL RRKEKNVQGIIEILKGMQELGVHPDQETYT K N V L K G 0 0 1 0 0 1 1 1 0 3 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1125.6758 E5KNY5;P42704;B4DSR0;B8ZZ38;A0A0C4DG06 E5KNY5 454 463 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.0020512 109.44 3 0.32386 0.39984 22.27 3 Median 0.32386 0.39984 22.27 3 0 Median NaN NaN NaN 0 0 Median 35902000 28258000 7644400 35902000 28258000 7644400 0 0 0 9206 1001 9462 33264;33265;33266 50138;50139;50140;50141 50139 4 NVQICSIFDIATELNR IAMDTEQGLIVPNVKNVQICSIFDIATELN VQICSIFDIATELNRLQKLGSVGQLSTTDL K N V N R L 1 1 2 1 1 1 1 0 0 3 1 0 0 1 0 1 1 0 0 1 0 0 16 0 1891.9462 P11182;B4E1Q7 P11182 361 376 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes no 2 0.0021336 82.705 1 0.35733 0.50652 NaN 1 Median 0.35733 0.50652 NaN 1 0 Median NaN NaN NaN 0 0 Median 1535300 865230 670050 1535300 865230 670050 0 0 0 9207 1254 9463 33267 50142 50142 1 NVQLPEVTINEETALAEVNLK NILDACTFALLAALKNVQLPEVTINEETAL VTINEETALAEVNLKKKSYLNIRTHPVATS K N V L K K 2 0 3 0 0 1 4 0 0 1 3 1 0 0 1 0 2 0 0 3 0 0 21 0 2323.2271 Q96B26;Q5JXM0 Q96B26 162 182 EXOSC8;DKFZp564C0482 Exosome complex component RRP43 yes no 2 2.1694E-31 161.08 4 0.73159 0.94002 11.933 4 Median 0.73159 0.94002 11.933 4 0 Median NaN NaN NaN 0 0 Median 25558000 14879000 10679000 25558000 14879000 10679000 0 0 0 9208 1682 9464 33268;33269;33270;33271 50143;50144;50145;50146;50147;50148;50149 50145 7 NVQLQENEIR IIQRLLEVRGSKPGKNVQLQENEIRGLCLK SKPGKNVQLQENEIRGLCLKSREIFLSQPI K N V I R G 0 1 2 0 0 2 2 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1241.6364 A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;A0A087WYY5 A0A024RBP2 27 36 PPP1CC Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit yes no 2 6.7498E-22 169.12 6 2 0.97602 1.3385 14.061 5 Median 1.0348 1.4304 4.6143 3 0 Median 0.67436 1.0982 0.6942 2 0 Median 517240000 254200000 263050000 372850000 168680000 204170000 144390000 85521000 58871000 9209 279 9465 33272;33273;33274;33275;33276;33277;33278;33279 50150;50151;50152;50153;50154;50155;50156;50157;50158;50159;50160;50161 50156 12 NVQLTENEIR IIGRLLEVQGSRPGKNVQLTENEIRGLCLK SRPGKNVQLTENEIRGLCLKSREIFLSQPI K N V I R G 0 1 2 0 0 1 2 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1214.6255 P62136;A0A140VJS9;B3KXM2;E9PMD7;F5H1L6;F5H037 P62136 27 36 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase yes no 2 4.9614E-06 116.05 3 2 0.78997 1.0918 16.746 4 Median 0.88994 1.2086 18.417 3 0 Median 0.70124 0.98631 NaN 1 0 Median 70401000 35718000 34684000 54227000 28789000 25438000 16175000 6929100 9245500 9210 1396 9466 33280;33281;33282;33283;33284 50162;50163;50164;50165;50166;50167 50165 6 NVQLVCSEHGLDNK VLEERPLTLYRGNSRNVQLVCSEHGLDNKI RNVQLVCSEHGLDNKIYPKNTKKKRVDLPK R N V N K I 0 0 2 1 1 1 1 1 1 0 2 1 0 0 0 1 0 0 0 2 0 0 14 0 1611.7675 Q96QE3 Q96QE3 1425 1438 ATAD5 ATPase family AAA domain-containing protein 5 yes yes 2 0.00052244 60.598 1 1 1.2553 1.6557 NaN 1 Median NaN NaN NaN 0 0 Median 1.2553 1.6557 NaN 1 0 Median 4261400 2757800 1503600 1438500 1438500 0 2822900 1319300 1503600 9211 1698 9467 33285;33286 50168;50169 50168 2 NVQSVSIIDTELK GDYTWTEFDEPFLTRNVQSVSIIDTELKVK TRNVQSVSIIDTELKVKDSQPIDLSACTVA R N V L K V 0 0 1 1 0 1 1 0 0 2 1 1 0 0 0 2 1 0 0 2 0 0 13 0 1444.7773 Q15645;H0YAL2 Q15645 69 81 TRIP13 Pachytene checkpoint protein 2 homolog yes no 2 1.5298E-16 154.15 3 0.35606 0.44127 NaN 1 Median 0.35606 0.44127 NaN 1 0 Median NaN NaN NaN 0 0 Median 54391000 46160000 8231300 54391000 46160000 8231300 0 0 0 9212 1514 9468 33287;33288;33289 50170;50171;50172 50171 3 NVSGFPQYPTGQEK LRYSYKDSFGSAVPRNVSGFPQYPTGQEKG RNVSGFPQYPTGQEKGDFTGHGERKGRNEK R N V E K G 0 0 1 0 0 2 1 2 0 0 0 1 0 1 2 1 1 0 1 1 0 0 14 0 1550.7365 W5ZR30;Q9UGU0 W5ZR30 720 733 TCF20 Transcription factor 20 yes no 2 0.0028324 58.274 1 2 1.2804 1.8309 3.0605 2 Median NaN NaN NaN 0 0 Median 1.2804 1.8309 3.0605 2 0 Median 12017000 5221400 6795800 0 0 0 12017000 5221400 6795800 9213 1783 9469 33290;33291;33292 50173;50174;50175;50176 50176 4 NVSIVAFYIYEQTK PLYFMDEIDAALDFKNVSIVAFYIYEQTKN KNVSIVAFYIYEQTKNAQFIIISLRNNMFE K N V T K N 1 0 1 0 0 1 1 0 0 2 0 1 0 1 0 1 1 0 2 2 0 0 14 0 1673.8665 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1229 1242 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.5612E-73 250.26 4 0.7533 0.93611 3.3883 4 Median 0.7533 0.93611 3.3883 4 0 Median NaN NaN NaN 0 0 Median 113700000 67763000 45937000 113700000 67763000 45937000 0 0 0 9214 1760 9470 33293;33294;33295;33296 50177;50178;50179;50180;50181;50182;50183;50184;50185;50186;50187 50182 11 NVSSFPDDATSPLQENR ELRKAKKDDQMLKRRNVSSFPDDATSPLQE SSFPDDATSPLQENRNNQGTVNWSVDDIVK R N V N R N 1 1 2 2 0 1 1 0 0 0 1 0 0 1 2 3 1 0 0 1 0 0 17 0 1875.8599 Q7Z726;A8K7D9;P52292;J3QLL0;J3KS65 Q7Z726 52 68 KPNA2 Importin subunit alpha;Importin subunit alpha-1 yes no 2 3.3776E-60 220.37 4 2 0.44628 0.60047 35.121 6 Median 0.43703 0.5911 2.2312 4 0 Median 0.75687 1.1627 2.3726 2 0 Median 85274000 55181000 30093000 45069000 32527000 12541000 40205000 22653000 17552000 9215 633 9471 33297;33298;33299;33300;33301;33302 50188;50189;50190;50191;50192;50193;50194;50195 50189 8 NVTDEQEGFAEGFVR HITTTPTPTQFLCLKNVTDEQEGFAEGFVR NVTDEQEGFAEGFVRALAELHSQNTLPSVT K N V V R A 1 1 1 1 0 1 3 2 0 0 0 0 0 2 0 0 1 0 0 2 0 0 15 0 1696.7693 Q6FHK0;P05412 Q6FHK0 102 116 JUN Transcription factor AP-1 yes no 2 3.2877E-15 153.74 5 2 1.4497 1.9565 21.746 7 Median 1.4657 1.9623 6.482 5 0 Median 0.91561 1.3269 2.9216 2 0 Median 65997000 30414000 35583000 38813000 15607000 23206000 27184000 14807000 12377000 9216 1237 9472 33303;33304;33305;33306;33307;33308;33309 50196;50197;50198;50199;50200;50201;50202;50203;50204;50205 50200 10 NVTDVVNTCHDAGISK ASPKLVMEEAPESYKNVTDVVNTCHDAGIS VTDVVNTCHDAGISKKAIKLRPIAVIKG__ K N V S K K 1 0 2 2 1 0 0 1 1 1 0 1 0 0 0 1 2 0 0 3 0 0 16 0 1728.8101 Q9Y3I0 Q9Y3I0 477 492 RTCB tRNA-splicing ligase RtcB homolog yes yes 2;3 1.4443E-50 209.19 6 1 0.71154 0.91473 12.911 7 Median 0.76251 0.97918 12.541 6 0 Median 0.61923 0.8204 NaN 1 0 Median 52837000 29911000 22926000 49901000 28021000 21881000 2936000 1890800 1045200 9217 1819 9473 33310;33311;33312;33313;33314;33315;33316 50206;50207;50208;50209;50210;50211;50212;50213;50214;50215;50216;50217;50218 50210 13 NVTDVVNTCHDAGISKK ASPKLVMEEAPESYKNVTDVVNTCHDAGIS TDVVNTCHDAGISKKAIKLRPIAVIKG___ K N V K K A 1 0 2 2 1 0 0 1 1 1 0 2 0 0 0 1 2 0 0 3 0 0 17 1 1856.9051 Q9Y3I0 Q9Y3I0 477 493 RTCB tRNA-splicing ligase RtcB homolog yes yes 3 0.014743 26.808 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2593000 2593000 0 2593000 2593000 0 0 0 0 9218 1819 9474 33317 50219 50219 1 NVTELNEPLSNEER AEQAERYDDMAAAMKNVTELNEPLSNEERN KNVTELNEPLSNEERNLLSVAYKNVVGARR K N V E R N 0 1 3 0 0 0 4 0 0 0 2 0 0 0 1 1 1 0 0 1 0 0 14 0 1642.7798 B4DE78;B4DHC4;B3KNB4;P61981 B4DE78 29 42 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes no 2 1.1182E-06 118.87 3 0.80515 1.0888 NaN 1 Median 0.80515 1.0888 NaN 1 0 Median NaN NaN NaN 0 0 Median 10735000 7558900 3176100 10735000 7558900 3176100 0 0 0 9219 758 9475 33318;33319;33320 50220;50221;50222;50223 50223 4 NVTICPNPEDTCDFAR GIEPLSEDAIITGFRNVTICPNPEDTCDFA VTICPNPEDTCDFARAARFVSTPFHEIMSL R N V A R A 1 1 2 2 2 0 1 0 0 1 0 0 0 1 2 0 2 0 0 1 0 0 16 0 1907.8142 O60566 O60566 598 613 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes yes 2 0.04032 69.345 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 958940 958940 0 958940 958940 0 0 0 0 9220 1191 9476 33321 50224 50224 1 NVTLCGHLHHGK MDFLADLMDNSELIRNVTLCGHLHHGKTCF LIRNVTLCGHLHHGKTCFVDCLIEQTHPEI R N V G K T 0 0 1 0 1 0 0 2 3 0 2 1 0 0 0 0 1 0 0 1 0 0 12 0 1371.683 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;K7EIT3 B4DZB1 82 93 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 3 0.0022105 73.781 2 0.6077 0.76556 28.136 2 Median 0.6077 0.76556 28.136 2 0 Median NaN NaN NaN 0 0 Median 27211000 17300000 9911300 27211000 17300000 9911300 0 0 0 9221 654 9477 33322;33323 50225;50226;50227 50227 3 NVTLPAVFK PLISVYSEKGESSGKNVTLPAVFKAPIRPD GESSGKNVTLPAVFKAPIRPDIVNFVHTNL K N V F K A 1 0 1 0 0 0 0 0 0 0 1 1 0 1 1 0 1 0 0 2 0 0 9 0 987.57532 P36578;Q59GY2;B4DFI6;B4DMJ6;Q53G74;H3BTP7;H3BU31;B4DP82 P36578 21 29 RPL4 60S ribosomal protein L4 yes no 1;2 1.0591E-05 172.21 6 2 0.62022 0.80198 23.026 3 Median 0.62022 0.80198 23.026 3 0 Median NaN NaN NaN 0 0 Median 1739500000 718270000 1021200000 1564900000 718270000 846640000 174560000 0 174560000 9222 1325 9478 33324;33325;33326;33327;33328;33329;33330;33331 50228;50229;50230;50231;50232;50233;50234;50235;50236 50229 9 NVTQIEPFCLETDR LPHFDTINLPEKKVKNVTQIEPFCLETDRR KNVTQIEPFCLETDRRGALKAQTWKHQLEE K N V D R R 0 1 1 1 1 1 2 0 0 1 1 0 0 1 1 0 2 0 0 1 0 0 14 0 1720.809 Q643R0;Q9ULW0;B3KM90;Q96FC3 Q643R0 586 599 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 1.1941E-20 174.42 4 0.87975 1.205 22.189 3 Median 0.87975 1.205 22.189 3 0 Median NaN NaN NaN 0 0 Median 11208000 5664000 5543700 11208000 5664000 5543700 0 0 0 9223 1581 9479 33332;33333;33334;33335 50237;50238;50239;50240 50237 4 NVTQIEPFCLETDRR LPHFDTINLPEKKVKNVTQIEPFCLETDRR NVTQIEPFCLETDRRGALKAQTWKHQLEEE K N V R R G 0 2 1 1 1 1 2 0 0 1 1 0 0 1 1 0 2 0 0 1 0 0 15 1 1876.9101 Q643R0;Q9ULW0;B3KM90;Q96FC3 Q643R0 586 600 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2;3 2.0358E-07 134.38 6 0.83267 1.1394 16.09 6 Median 0.83267 1.1394 16.09 6 0 Median NaN NaN NaN 0 0 Median 120230000 65142000 55092000 120230000 65142000 55092000 0 0 0 9224 1581 9480 33336;33337;33338;33339;33340;33341 50241;50242;50243;50244;50245;50246;50247;50248;50249;50250;50251;50252 50246 12 NVVDSSQKPTPSAR KTSEKKDSKESSVVKNVVDSSQKPTPSARE KNVVDSSQKPTPSAREDPAPKKSSSEPPPR K N V A R E 1 1 1 1 0 1 0 0 0 0 0 1 0 0 2 3 1 0 0 2 0 0 14 1 1484.7583 Q03164;E9PR05;B3W6H7;Q8N6B4;Q1HA41 Q03164 1236 1249 KMT2A;TET1-MLL;MLL/CALM fusion;MLL-MAML2 Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2;3 1.5298E-26 185.3 5 2 0.96792 1.3035 6.2335 5 Median 0.98143 1.3175 1.0854 3 0 Plateau 0.77036 1.2032 7.3504 2 0 Median 41548000 22234000 19314000 18713000 9516600 9196400 22835000 12718000 10118000 9225 1438 9481 33342;33343;33344;33345;33346;33347;33348 50253;50254;50255;50256;50257;50258;50259;50260;50261;50262 50255 10 NVVHQLSVTLEDLYNGATR FFGGGGRMQRERRGKNVVHQLSVTLEDLYN QLSVTLEDLYNGATRKLALQKNVICDKCEG K N V T R K 1 1 2 1 0 1 1 1 1 0 3 0 0 0 0 1 2 0 1 3 0 0 19 0 2128.0913 P31689 P31689 106 124 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 3 3.0516E-09 50.226 4 1 0.62777 0.87685 34.222 5 Median 0.51442 0.70219 26.407 4 0 Median 0.82779 1.2367 NaN 1 0 Median 38494000 23765000 14729000 22846000 15384000 7461600 15649000 8381100 7267400 9226 1309 9482 33349;33350;33351;33352;33353 50263;50264;50265;50266;50267;50268;50269 50268 7 NVVHQLSVTLEDLYNGATRK FFGGGGRMQRERRGKNVVHQLSVTLEDLYN LSVTLEDLYNGATRKLALQKNVICDKCEGR K N V R K L 1 1 2 1 0 1 1 1 1 0 3 1 0 0 0 1 2 0 1 3 0 0 20 1 2256.1862 P31689 P31689 106 125 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 3 0.0014788 86.189 2 1 0.6094 0.88151 13.085 2 Median 0.59364 0.80361 NaN 1 0 Median 0.62557 0.96697 NaN 1 0 Median 12470000 7109400 5360800 3374500 2387800 986730 9095700 4721600 4374100 9227 1309 9483 33354;33355;33356 50270;50271;50272 50271 3 NVVLPTETEVAPAK KDVRWPTETDVSSAKNVVLPTETEVAPAKD KNVVLPTETEVAPAKDVTLLKETERASPIK K N V A K D 2 0 1 0 0 0 2 0 0 0 1 1 0 0 2 0 2 0 0 3 0 0 14 0 1466.7981 E7EVA0;P27816;B4DM10;Q6NX68;A0A024R2V2;A0A024R2S1;Q05D06 E7EVA0 350 363 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 1.9309E-06 84.658 4 1.1371 1.4378 11.489 4 Median 1.1371 1.4378 11.489 4 0 Median NaN NaN NaN 0 0 Median 20006000 8457300 11549000 20006000 8457300 11549000 0 0 0 9228 1017 9484 33357;33358;33359;33360 50273;50274;50275;50276;50277;50278;50279;50280;50281 50280 9 NVVMVNQGLTK YTEESLLPVMQHLAKNVVMVNQGLTKHMTV HLAKNVVMVNQGLTKHMTVKNKYATSKHAK K N V T K H 0 0 2 0 0 1 0 1 0 0 1 1 1 0 0 0 1 0 0 3 0 0 11 0 1201.6489 P14635;E9PC90;H1UBN2 P14635 386 396 CCNB1;CCNB1V G2/mitotic-specific cyclin-B1 yes no 2 0.011078 42.001 2 0.66266 0.98989 5.3802 2 Median NaN NaN NaN 0 0 Median 0.66266 0.98989 5.3802 2 0 Median 17155000 9911800 7243400 0 0 0 17155000 9911800 7243400 9229 1268 9485 33361;33362 50282;50283 50282 531 2 NVVTIFSAPNYCYR AHQLVMEGYNWCHDRNVVTIFSAPNYCYRC RNVVTIFSAPNYCYRCGNQAAIMELDDTLK R N V Y R C 1 1 2 0 1 0 0 0 0 1 0 0 0 1 1 1 1 0 2 2 0 0 14 0 1702.8137 B3KQ51;Q8WZ56;Q6I9T8;Q5U0I7;B3KUN1;B3KRM2;A0A140VJS0;P67775;P62714;H0YC23 B3KQ51 190 203 PPP2CA;PPP2CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 2 0.00012984 85.958 1 0.45107 0.60819 NaN 1 Median 0.45107 0.60819 NaN 1 0 Median NaN NaN NaN 0 0 Median 3336100 2234500 1101600 3336100 2234500 1101600 0 0 0 9230 502 9486 33363 50284 50284 1 NVVVVDGVR VQTKTKKTLAKPNIRNVVVVDGVRTPFLLS AKPNIRNVVVVDGVRTPFLLSGTSYKDLMP R N V V R T 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 5 0 0 9 0 955.54508 P55084;D6W539;B4DY96;B5MD38;F5GZQ3;C9JEY0;C9JE81;C9K0M0 P55084 53 61 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 0.022985 53.775 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11284000 7486400 3798100 7486400 7486400 0 3798100 0 3798100 9231 1378 9487 33364;33365 50285;50286 50286 2 NWPFLEGCACTPER AWQPFLKDHRISTFKNWPFLEGCACTPERM KNWPFLEGCACTPERMAEAGFIHCPTENEP K N W E R M 1 1 1 0 2 0 2 1 0 0 1 0 0 1 2 0 1 1 0 0 0 0 14 0 1735.7447 B7Z7B9;E7CU85;A0A0B4J1S3;O15392;A3E0Z5;H3BLT4;A3E0Z4;A3E0Z6;A3E0Z7;A3E0Z8 B7Z7B9 24 37 BIRC5 Baculoviral IAP repeat-containing protein 5 yes no 2 0.02252 30.004 1 0.33841 0.50761 NaN 1 Median NaN NaN NaN 0 0 Median 0.33841 0.50761 NaN 1 0 Median 7337600 5361000 1976600 0 0 0 7337600 5361000 1976600 9232 413 9488 33366 50287 50287 1 NYDIGAALDTIQYSK FSDEGGWLTRLLQTKNYDIGAALDTIQYSK NYDIGAALDTIQYSKHPPPL__________ K N Y S K H 2 0 1 2 0 1 0 1 0 2 1 1 0 0 0 1 1 0 2 0 0 0 15 0 1670.8152 Q13501;B4E3V2;Q13502 Q13501 421 435 SQSTM1 Sequestosome-1 yes no 2 5.7451E-23 159.08 4 0.64692 0.8195 18.707 4 Median 0.64692 0.8195 18.707 4 0 Median NaN NaN NaN 0 0 Median 26501000 15027000 11474000 26501000 15027000 11474000 0 0 0 9233 1471 9489 33367;33368;33369;33370 50288;50289;50290;50291;50292;50293;50294 50290 7 NYDPALHPFEVPR NYVRETKLDLQRVPRNYDPALHPFEVPREY PRNYDPALHPFEVPREYIRALNATKLERVF R N Y P R E 1 1 1 1 0 0 1 0 1 0 1 0 0 1 3 0 0 0 1 1 0 0 13 0 1553.7627 A0A087WT20;Q9NV06;B3KME9;E5RHM4 A0A087WT20 179 191 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2;3 0.00070954 79.659 4 2 0.85591 1.2087 11.653 6 Median 1.0237 1.3957 13.924 4 0 Linear 0.73867 1.1594 3.5677 2 0 Median 170580000 87717000 82865000 110680000 55083000 55602000 59898000 32635000 27263000 9234 331 9490 33371;33372;33373;33374;33375;33376 50295;50296;50297;50298;50299;50300;50301;50302;50303;50304;50305 50301 11 NYEDEDSLK EINNIIKIVGLQYKKNYEDEDSLKTLRYGK GLQYKKNYEDEDSLKTLRYGKIMIMTDQDQ K N Y L K T 0 0 1 2 0 0 2 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 9 0 1111.4669 P11388 P11388 521 529 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.00048852 114.99 2 1 0.84371 1.1485 10.444 3 Median 0.93902 1.2163 14.008 2 0 Median 0.70731 1.1485 NaN 1 0 Median 194640000 104730000 89902000 138710000 72488000 66218000 55929000 32246000 23684000 9235 1256 9491 33377;33378;33379 50306;50307;50308;50309;50310 50306 5 NYGFVHIEDK LFEQYGKVLECDIIKNYGFVHIEDKTAAED CDIIKNYGFVHIEDKTAAEDAIRNLHHYKL K N Y D K T 0 0 1 1 0 0 1 1 1 1 0 1 0 1 0 0 0 0 1 1 0 0 10 0 1220.5826 A8K9U0;Q9BWF3;E9PB51;Q9BQ04;E9PLB0;E9PM61;D6R9K7;U3KQD5;J3QRR5 A8K9U0 36 45 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 2 0.004916 63.076 1 0.46818 0.58997 NaN 1 Median 0.46818 0.58997 NaN 1 0 Median NaN NaN NaN 0 0 Median 8969600 5633000 3336600 8969600 5633000 3336600 0 0 0 9236 650 9492 33380 50311 50311 1 NYGGTVAVTESGHTCQR PSSGPKYQCLKGTGKNYGGTVAVTESGHTC GGTVAVTESGHTCQRWSEQTPHKHNRTPEN K N Y Q R W 1 1 1 0 1 1 1 3 1 0 0 0 0 0 0 1 3 0 1 2 0 0 17 0 1835.8221 CON__P06868 CON__P06868 289 305 yes yes 2;3 1.3035E-08 124.42 2 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17446000 17446000 0 11630000 11630000 0 5815800 5815800 0 + 9237 956 9493 33381;33382;33383;33384;33385 50312;50313;50314;50315;50316 50313 5 NYILDQTNVYGSAQR QCLNRLIQIAARKKRNYILDQTNVYGSAQR NYILDQTNVYGSAQRRKMRPFEGFQRKAIV R N Y Q R R 1 1 2 1 0 2 0 1 0 1 1 0 0 0 0 1 1 0 2 1 0 0 15 0 1740.8431 M0R3F1;A8K3W4;A0A024R0J9;A0A0A0MRA5;B7Z4B8;A8K6U7;Q9BUJ2;A8K5K0 M0R3F1 350 364 HNRNPUL1;HNRPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 2 2.0825E-11 152.47 4 2 0.45787 0.62919 54.204 6 Median 0.40142 0.55636 12.615 4 0 Median 1.1271 1.6364 0.19642 2 0 Median 31754000 18627000 13127000 17977000 12054000 5923800 13776000 6573000 7203300 9238 39 9494 33386;33387;33388;33389;33390;33391 50317;50318;50319;50320;50321;50322;50323;50324;50325;50326 50319 10 NYLALQSYCK CKQHADRLDRKWKRKNYLALQSYCKMSLQE KWKRKNYLALQSYCKMSLQEREKQLSPEAQ K N Y C K M 1 0 1 0 1 1 0 0 0 0 2 1 0 0 0 1 0 0 2 0 0 0 10 0 1258.6016 A0A0U1RRH6;O94880;B4DG57 A0A0U1RRH6 510 519 PHF14 PHD finger protein 14 yes no 2 0.011111 71.614 3 1 0.86207 1.1084 2.5706 2 Median 0.86991 1.0884 NaN 1 0 Median 0.85431 1.1287 NaN 1 0 Median 12270000 4023300 8246600 9398800 2402700 6996100 2871100 1620500 1250600 9239 487 9495 33392;33393;33394;33395 50327;50328;50329;50330;50331 50329 5 NYLEGIYNVPVAAVR VQFRIPMEMTRVDLRNYLEGIYNVPVAAVR NYLEGIYNVPVAAVRTRVQHGSNKRRDHRN R N Y V R T 2 1 2 0 0 0 1 1 0 1 1 0 0 0 1 0 0 0 2 3 0 0 15 0 1676.8886 H7C2P7;B2R9J4;A0A024RCB2;A6NJD9;A8MVT4;A8MYK1;Q16540 H7C2P7 50 64 MRPL23 39S ribosomal protein L23, mitochondrial yes no 2 6.3015E-20 166.86 4 0.74925 1.014 21.905 2 Median 0.74925 1.014 21.905 2 0 Median NaN NaN NaN 0 0 Median 26844000 12986000 13857000 26844000 12986000 13857000 0 0 0 9240 292 9496 33396;33397;33398;33399 50332;50333;50334;50335 50332 4 NYLNFVSPLPDIVGQK PKLIFKKGSRKNTDKNYLNFVSPLPDIVGQ YLNFVSPLPDIVGQKSLSGKPSGSLGIVSN K N Y Q K S 0 0 2 1 0 1 0 1 0 1 2 1 0 1 2 1 0 0 1 2 0 0 16 0 1802.9567 Q9Y2X9;B3KMX4;B4DM04;B3KND7 Q9Y2X9 478 493 ZNF281 Zinc finger protein 281 yes no 2 0.0022241 82.362 2 0.7448 0.93873 15.094 2 Median 0.7448 0.93873 15.094 2 0 Median NaN NaN NaN 0 0 Median 5733800 3427100 2306700 5733800 3427100 2306700 0 0 0 9241 1811 9497 33400;33401 50336;50337 50336 2 NYLPAINGIVFLVDCADHSR TFDLGGHEQARRVWKNYLPAINGIVFLVDC INGIVFLVDCADHSRLVESKVELNALMTDE K N Y S R L 2 1 2 2 1 0 0 1 1 2 2 0 0 1 1 1 0 0 1 2 0 0 20 0 2273.1263 Q8NG23;Q5SQT9;Q9NR31;Q5SQT8;B2R679 Q8NG23 88 107 SAR1A GTP-binding protein SAR1a yes no 3 0.00048711 62.739 1 0.65262 0.91649 NaN 1 Median 0.65262 0.91649 NaN 1 0 Median NaN NaN NaN 0 0 Median 1926300 1318100 608200 1926300 1318100 608200 0 0 0 9242 1564 9498 33402 50338;50339;50340 50339 3 NYPATVHGALLSGLR QPIPRLFFAGEHTIRNYPATVHGALLSGLR NYPATVHGALLSGLREAGRIADQFLGAMYT R N Y L R E 2 1 1 0 0 0 0 2 1 0 3 0 0 0 1 1 1 0 1 1 0 0 15 0 1567.8471 A8K2R3;O60341;R4GMP9 A8K2R3 684 698 KDM1A Lysine-specific histone demethylase 1A yes no 2;3 0.0014901 49.223 1 3 1.1052 1.5625 38.951 4 Median 0.57809 0.77108 NaN 1 0 Median 1.1159 1.5931 9.8732 3 0 Median 29813000 15361000 14452000 3333000 2203400 1129500 26480000 13158000 13323000 9243 583 9499 33403;33404;33405;33406 50341;50342;50343;50344;50345 50343 5 NYSPYYNTIDDLK IQDWYDKKGPAAIQKNYSPYYNTIDDLKDQ QKNYSPYYNTIDDLKDQIVDLTVGNNKTLL K N Y L K D 0 0 2 2 0 0 0 0 0 1 1 1 0 0 1 1 1 0 3 0 0 0 13 0 1604.7359 CON__P35527;P35527 CON__P35527 200 212 KRT9 Keratin, type I cytoskeletal 9 yes no 2 6.0815E-17 167.12 3 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1040400000 1040400000 0 464450000 464450000 0 575950000 575950000 0 + 9244 963 9500 33407;33408;33409;33410;33411;33412 50346;50347;50348;50349;50350;50351 50346 6 NYSPYYNTIDDLKDQIVDLTVGNNK IQDWYDKKGPAAIQKNYSPYYNTIDDLKDQ DLKDQIVDLTVGNNKTLLDIDNTRMTLDDF K N Y N K T 0 0 4 4 0 1 0 1 0 2 2 2 0 0 1 1 2 0 3 2 0 0 25 1 2901.4032 CON__P35527;P35527 CON__P35527 200 224 KRT9 Keratin, type I cytoskeletal 9 yes no 3 4.1053E-06 55.734 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23903000 23903000 0 23903000 23903000 0 0 0 0 + 9245 963 9501 33413 50352 50352 1 NYTEEEDRFLICMLHK PFHQLRISYGTNKGKNYTEEEDRFLICMLH YTEEEDRFLICMLHKLGFDKENVYDELRQC K N Y H K L 0 1 1 1 1 0 3 0 1 1 2 1 1 1 0 0 1 0 1 0 0 0 16 1 2096.9659 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370 O60264 946 961 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 3 0.013944 26.781 2 2.2549 2.9212 3.0498 2 Median 2.2549 2.9212 3.0498 2 0 Median NaN NaN NaN 0 0 Median 25587000 7527300 18059000 25587000 7527300 18059000 0 0 0 9246 1189 9502 33414;33415 50353;50354 50353 2 NYTLVTVFGNLHQAQLGGVPGTYQLVR EFVRQALAYLEQSYKNYTLVTVFGNLHQAQ QAQLGGVPGTYQLVRSFLNIKLPAPLPGLQ K N Y V R S 1 1 2 0 0 3 0 4 1 0 4 0 0 1 1 0 3 0 2 4 0 0 27 0 2944.5559 H3BVG0;Q8N1F7;A8K897;H3BPA9 H3BVG0 268 294 NUP93 Nuclear pore complex protein Nup93 yes no 3 3.1181E-47 132.36 4 0.19808 0.27277 0.20348 2 Median 0.19808 0.27277 0.20348 2 0 Median NaN NaN NaN 0 0 Median 15318000 13955000 1362500 15318000 13955000 1362500 0 0 0 9247 1111 9503 33416;33417;33418;33419 50355;50356;50357;50358 50357 4 NYVDCVR QKIHFPDFSTRDIHRNYVDCVRWLGDLILS FSTRDIHRNYVDCVRWLGDLILSKSCENAI R N Y V R W 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 7 0 924.41235 O75530;B4DVW7 O75530 307 313 EED Polycomb protein EED yes no 2 0.030428 63.301 1 0.56137 0.74784 NaN 1 Median 0.56137 0.74784 NaN 1 0 Median NaN NaN NaN 0 0 Median 26467000 15614000 10853000 26467000 15614000 10853000 0 0 0 9248 1203 9504 33420 50359 50359 1 PAAAATGPPPGNTSSTQK SQSQASRVLGQSSSKPAAAATGPPPGNTSS AATGPPPGNTSSTQKWKICTICNELFPENV K P A Q K W 4 0 1 0 0 1 0 2 0 0 0 1 0 0 4 2 3 0 0 0 0 0 18 0 1651.8166 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 428 445 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 3.899E-40 188.48 4 0.80928 1.0335 3.1838 3 Plateau 0.80928 1.0335 3.1838 3 0 Plateau NaN NaN NaN 0 0 Median 15669000 9846600 5822800 15669000 9846600 5822800 0 0 0 9249 729 9505 33421;33422;33423;33424 50360;50361;50362;50363;50364;50365;50366 50362 7 PAADADLQLSEILK ______________________________ KPAADADLQLSEILKFGLDKLLASEGSTMD K P A L K F 3 0 0 2 0 1 1 0 0 1 3 1 0 0 1 1 0 0 0 0 0 0 14 0 1482.793 Q9H678;A0A0A0MRH8;B4DLS6;A0A0A0MSH9;X5D2E5;Q86WJ1 Q9H678 15 28 CHD1L Chromodomain-helicase-DNA-binding protein 1-like yes no 2 0.041688 58.781 1 0.65135 0.80431 NaN 1 Median 0.65135 0.80431 NaN 1 0 Median NaN NaN NaN 0 0 Median 1315400 669980 645420 1315400 669980 645420 0 0 0 9250 387 9506 33425 50367 50367 0 PAALAAAPAK GSFSALVGRTNGLTKPAALAAAPAKPGGAG NGLTKPAALAAAPAKPGGAGGSKKLVIKNF K P A A K P 6 0 0 0 0 0 0 0 0 0 1 1 0 0 2 0 0 0 0 0 0 0 10 0 879.5178 Q13619;A0A087WWN2 Q13619 24 33 CUL4A Cullin-4A yes no 2 8.7995E-08 127.12 1 0.68815 0.87224 NaN 1 Median 0.68815 0.87224 NaN 1 0 Median NaN NaN NaN 0 0 Median 6064200 3687700 2376500 6064200 3687700 2376500 0 0 0 9251 1474 9507 33426 50368;50369 50369 2 PAALTGTLEVR QSMISTQNQYSTLSKPAALTGTLEVRLMGC TLSKPAALTGTLEVRLMGCQDILENVPGRS K P A V R L 2 1 0 0 0 0 1 1 0 0 2 0 0 0 1 0 2 0 0 1 0 0 11 0 1126.6346 Q16513;B1AL79;Q9UHS4 Q16513 324 334 PKN2 Serine/threonine-protein kinase N2 yes no 2 0.012677 56.432 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9252 1519 9508 33427 50370 50370 1 PAASLAVHTDK SADNTVILWDMSLGKPAASLAVHTDKVQTL SLGKPAASLAVHTDKVQTLQFHPFEAQTLI K P A D K V 3 0 0 1 0 0 0 0 1 0 1 1 0 0 1 1 1 0 0 1 0 0 11 0 1108.5877 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DNL1;B4DJV5 Q9BV37 291 301 PWP1 Periodic tryptophan protein 1 homolog yes no 2;3 1.2253E-10 158.47 4 2 0.66078 0.85633 4.2369 5 Median 0.68984 0.88576 2.5563 3 0 Median 0.54887 0.82591 3.0619 2 0 Median 134240000 81903000 52336000 105140000 63349000 41793000 29097000 18554000 10543000 9253 273 9509 33428;33429;33430;33431;33432;33433 50371;50372;50373;50374;50375;50376 50372 6 PAASSPETPSAGQQEAK PHNDTEIANSTPNPKPAASSPETPSAGQQE ASSPETPSAGQQEAKTDQADGPREPPQSAR K P A A K T 4 0 0 0 0 2 2 1 0 0 0 1 0 0 3 3 1 0 0 0 0 0 17 0 1654.7798 Q9NQS7;B3KPD3 Q9NQS7 417 433 INCENP Inner centromere protein yes no 2 3.4962E-25 169.09 4 2 0.91275 1.2223 19.336 6 Median 1.0814 1.3905 21.814 4 0 Median 0.81628 1.1398 0.96046 2 0 Median 24754000 12890000 11863000 16070000 8173900 7896400 8683300 4716600 3966700 9254 1752 9510 33434;33435;33436;33437;33438;33439 50377;50378;50379;50380;50381;50382;50383;50384;50385;50386;50387 50380 11 PAAVVAPITTGYTVK QQKSQKKAELLDNEKPAAVVAPITTGYTVK PAAVVAPITTGYTVKISNYGWDQSDKFVKI K P A V K I 3 0 0 0 0 0 0 1 0 1 0 1 0 0 2 0 3 0 1 3 0 0 15 0 1486.8395 Q6NVY0;A0A024R904;Q9HB71;B4DFD3 Q6NVY0 60 74 CACYBP Calcyclin-binding protein yes no 2 0.0002173 77.379 1 0.61506 0.78839 NaN 1 Median 0.61506 0.78839 NaN 1 0 Median NaN NaN NaN 0 0 Median 3525600 2221200 1304400 3525600 2221200 1304400 0 0 0 9255 210 9511 33440 50388 50388 1 PACVVYTELLYTNK QPVAIHPSSVLFHCKPACVVYTELLYTNKC KPACVVYTELLYTNKCYMRDLCVIDAQWLY K P A N K C 1 0 1 0 1 0 1 0 0 0 2 1 0 0 1 0 2 0 2 2 0 0 14 0 1669.8385 B4DIS6;Q9H6R0;I3L1L6;Q9NPV4;Q05BE5 B4DIS6 722 735 DHX33;DKFZp762F2011 Putative ATP-dependent RNA helicase DHX33 yes no 2 0.02422 41.283 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1211200 1211200 0 1211200 1211200 0 0 0 0 9256 811 9512 33441 50389 50389 1 PADTEPPPLLVYK WYEADKRRLFPPWIKPADTEPPPLLVYKWC IKPADTEPPPLLVYKWCQGINNLQDVWETS K P A Y K W 1 0 0 1 0 0 1 0 0 0 2 1 0 0 4 0 1 0 1 1 0 0 13 0 1438.7708 Q6P2Q9;I3L0J9 Q6P2Q9 942 954 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 1.0991E-12 127.4 2 0.50325 0.62924 1.0093 2 Median 0.50325 0.62924 1.0093 2 0 Median NaN NaN NaN 0 0 Median 14508000 9447300 5060300 14508000 9447300 5060300 0 0 0 9257 1592 9513 33442;33443 50390;50391;50392;50393 50392 4 PAEEQLDVGQSK KRTIKQKQRRKFMAKPAEEQLDVGQSKDEN MAKPAEEQLDVGQSKDENIHTSHITQDEFQ K P A S K D 1 0 0 1 0 2 2 1 0 0 1 1 0 0 1 1 0 0 0 1 0 0 12 0 1299.6307 Q03188;H0Y8J2 Q03188 429 440 CENPC Centromere protein C yes no 2 2.8711E-16 164.48 4 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11747000 11747000 0 7403600 7403600 0 4343400 4343400 0 9258 1439 9514 33444;33445;33446;33447;33448;33449;33450 50394;50395;50396;50397;50398;50399;50400 50394 7 PAGPTVEQQGEMAR IVEGKKVGTFFSEVKPAGPTVEQQGEMARS KPAGPTVEQQGEMARSGGRMLATLEPEQRA K P A A R S 2 1 0 0 0 2 2 2 0 0 0 0 1 0 2 0 1 0 0 1 0 0 14 0 1469.6933 P54886 P54886 358 371 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 5.4859E-10 101.71 2 1.7605 2.4833 3.8124 2 Median NaN NaN NaN 0 0 Median 1.7605 2.4833 3.8124 2 0 Median 14687000 5042600 9644400 0 0 0 14687000 5042600 9644400 9259 1375 9515 33451;33452 50401;50402 50402 598 2 PAGQNLQGIEDK KRREWKSILLDMATRPAGQNLQGIEDKITK ATRPAGQNLQGIEDKITKMKVTMVAWDRHD R P A D K I 1 0 1 1 0 2 1 2 0 1 1 1 0 0 1 0 0 0 0 0 0 0 12 0 1268.6361 Q8WWQ0 Q8WWQ0 410 421 PHIP PH-interacting protein yes yes 2 0.0010383 84.687 2 0.84858 1.0939 8.8851 2 Median 0.84858 1.0939 8.8851 2 0 Median NaN NaN NaN 0 0 Median 6932000 2965800 3966200 6932000 2965800 3966200 0 0 0 9260 1668 9516 33453;33454 50403;50404;50405;50406 50404 4 PAIIFR QSSSLSNAHIDYTTKPAIIFRIAARNEKGY NAHIDYTTKPAIIFRIAARNEKGYGPATQV K P A F R I 1 1 0 0 0 0 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 0 6 0 715.4381 A6NEM2;P51610;H7C1C4 A6NEM2 2022 2027 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 0.045449 74.417 1 0.53137 0.7176 NaN 1 Median 0.53137 0.7176 NaN 1 0 Median NaN NaN NaN 0 0 Median 3688200 2278300 1409900 3688200 2278300 1409900 0 0 0 9261 564 9517 33455 50407 50407 1 PAISNILNR DDDELIFVGEISSSKPAISNILNRGHSSSS EISSSKPAISNILNRGHSSSSSKGIKSEPH K P A N R G 1 1 2 0 0 0 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 0 9 0 996.57163 A8K124;B4DHL1;A0A024R5W1;Q6N043;H0YLA6;H0YL38;H0YN90;Q8ND82;Q9UJJ2 Q8ND82 56 64 SUHW4;ZNF280D;ZNF280C Zinc finger protein 280D;Zinc finger protein 280C no no 2 0.005103 73.208 2 0.70599 1.0164 7.9172 2 Median NaN NaN NaN 0 0 Median 0.70599 1.0164 7.9172 2 0 Median 14935000 8812000 6122700 0 0 0 14935000 8812000 6122700 9262 1652;151 9518 33456;33457 50408;50409 50409 2 PALEEEEAPR CPEEPEPTPGLVLSKPALEEEEAPRALSLL LVLSKPALEEEEAPRALSLLSLPPKKRSIL K P A P R A 2 1 0 0 0 0 4 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 10 0 1139.5459 Q4VC44 Q4VC44 239 248 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes yes 2 0.00046458 88.948 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7609200 7609200 0 4755200 4755200 0 2854000 2854000 0 9263 1536 9519 33458;33459 50410;50411 50410 2 PANIFLGPR LAHLHSQGLVHLDVKPANIFLGPRGRCKLG VHLDVKPANIFLGPRGRCKLGDFGLLVELG K P A P R G 1 1 1 0 0 0 0 1 0 1 1 0 0 1 2 0 0 0 0 0 0 0 9 0 983.55525 A6NHV6;Q0IJ49;B4DZM6;Q99640;I3L136 A6NHV6 227 235 PKMYT1 Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase yes no 2 0.011795 60.788 3 0.65244 1.1182 15.61 3 Plateau NaN NaN NaN 0 0 Median 0.65244 1.1182 15.61 3 0 Plateau 7470900000 4712600000 2758200000 0 0 0 7470900000 4712600000 2758200000 9264 569 9520 33460;33461;33462 50412;50413;50414;50415;50416 50412 5 PANSVFTTK SFPIRRLSTPSSVTKPANSVFTTKWIWYWK PSSVTKPANSVFTTKWIWYWKNESGTWIQY K P A T K W 1 0 1 0 0 0 0 0 0 0 0 1 0 1 1 1 2 0 0 1 0 0 9 0 963.50255 Q7Z2W4;A8K9U6;C9J6P4;Q05DV5;H7C5K1 Q7Z2W4 598 606 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 0.0013796 83.623 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4713500 4713500 0 4713500 4713500 0 0 0 0 9265 1613 9521 33463 50417 50417 1 PAPPKPEPK TKQEPTRRSARLSAKPAPPKPEPKPRKTSA ARLSAKPAPPKPEPKPRKTSAKKEPGAKIS K P A P K P 1 0 0 0 0 0 1 0 0 0 0 2 0 0 5 0 0 0 0 0 0 0 9 1 959.54402 A0A087WZE9;Q15651;P05204 P05204 34 42 HMGN3;HMGN2 High mobility group nucleosome-binding domain-containing protein 3;Non-histone chromosomal protein HMG-17 no no 2;3 0.00027797 115.49 3 2 0.78222 0.96496 28.358 5 Median 0.89098 1.095 17.47 3 0 Median 0.4444 0.71134 6.557 2 0 Median 227700000 134930000 92769000 115140000 58139000 56999000 112560000 76788000 35770000 9266 367;1236 9522 33464;33465;33466;33467;33468 50418;50419;50420;50421;50422;50423;50424 50418 7 PAPPKPEPKPK VKDEPQRRSARLSAKPAPPKPEPKPKKAPA LSAKPAPPKPEPKPKKAPAKKGEKVPKGKK K P A P K K 1 0 0 0 0 0 1 0 0 0 0 3 0 0 6 0 0 0 0 0 0 0 11 2 1184.6917 P05204 P05204 32 42 HMGN2 Non-histone chromosomal protein HMG-17 yes yes 2;3;4 2.2054E-12 179.1 7 3 1.0158 1.1873 21.576 10 Median 1.0402 1.2055 8.1269 7 0 Median 0.53223 0.94606 13.04 3 0 Plateau 591150000 320840000 270310000 408060000 199270000 208790000 183090000 121570000 61518000 9267 1236 9523 33469;33470;33471;33472;33473;33474;33475;33476;33477;33478 50425;50426;50427;50428;50429;50430;50431;50432;50433;50434;50435;50436;50437;50438;50439;50440;50441 50426 17 PAPPKPEPKPR TKQEPTRRSARLSAKPAPPKPEPKPRKTSA LSAKPAPPKPEPKPRKTSAKKEPGAKISRG K P A P R K 1 1 0 0 0 0 1 0 0 0 0 2 0 0 6 0 0 0 0 0 0 0 11 2 1212.6979 A0A087WZE9;Q15651 A0A087WZE9 34 44 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 yes no 4 0.001009 93.096 3 0.96864 1.1792 5.9777 3 Median 0.96864 1.1792 5.9777 3 0 Median NaN NaN NaN 0 0 Median 24262000 11587000 12674000 24262000 11587000 12674000 0 0 0 9268 367 9524 33479;33480;33481 50442;50443;50444;50445;50446 50444 5 PAPPKPEPR VKDEPQRRSARLSAKPAPPKPEPRPKKASA ARLSAKPAPPKPEPRPKKASAKKGEKLPKG K P A P R P 1 1 0 0 0 0 1 0 0 0 0 1 0 0 5 0 0 0 0 0 0 0 9 1 987.55016 A0A024R046;O00479 A0A024R046 32 40 HMGN4 High mobility group nucleosome-binding domain-containing protein 4 yes no 2;3 2.6305E-06 131.06 5 2 0.68175 0.89993 5.435 7 Median 0.70766 0.95631 5.0113 5 0 Median 0.52827 0.87937 2.9322 2 0 Median 223440000 133420000 90016000 145380000 83745000 61635000 78060000 49679000 28381000 9269 28 9525 33482;33483;33484;33485;33486;33487;33488 50447;50448;50449;50450;50451;50452;50453;50454;50455;50456;50457 50450 11 PAPPKPEPRPK VKDEPQRRSARLSAKPAPPKPEPRPKKASA LSAKPAPPKPEPRPKKASAKKGEKLPKGRK K P A P K K 1 1 0 0 0 0 1 0 0 0 0 2 0 0 6 0 0 0 0 0 0 0 11 2 1212.6979 A0A024R046;O00479 A0A024R046 32 42 HMGN4 High mobility group nucleosome-binding domain-containing protein 4 yes no 3 0.0005758 113.93 2 0.92991 1.152 12.893 2 Median 0.92991 1.152 12.893 2 0 Median NaN NaN NaN 0 0 Median 20901000 11221000 9679900 20901000 11221000 9679900 0 0 0 9270 28 9526 33489;33490 50458;50459 50458 2 PAPPQTEQVESK KVLVPGIPGHHAAIKPAPPQTEQVESKRKS AIKPAPPQTEQVESKRKSGGNEVSIEERLG K P A S K R 1 0 0 0 0 2 2 0 0 0 0 1 0 0 3 1 1 0 0 1 0 0 12 0 1309.6514 Q15061 Q15061 417 428 WDR43 WD repeat-containing protein 43 yes yes 2 7.4803E-17 178.54 3 2 0.93132 1.1725 14.023 5 Median 0.94513 1.1725 8.879 3 0 Median 0.72733 1.1045 21.98 2 0 Median 101780000 54892000 46890000 59266000 28970000 30296000 42516000 25922000 16595000 9271 1505 9527 33491;33492;33493;33494;33495 50460;50461;50462;50463;50464;50465;50466;50467;50468;50469 50463 10 PAQPALSREELEALFLPYDLK PSLALNIIQNRNMGKPAQPALSREELEALF SREELEALFLPYDLKRLEMYSRNMVDYHLI K P A L K R 3 1 0 1 0 1 3 0 0 0 5 1 0 1 3 1 0 0 1 0 0 0 21 1 2399.2737 Q9H0A0;A0A087WV29 Q9H0A0 803 823 NAT10 N-acetyltransferase 10 yes no 3 1.3295E-48 148.04 3 2 0.85617 1.137 44.718 5 Median 0.85617 1.137 4.9243 3 0 Median 0.53221 0.92276 86.17 2 0 Median 371800000 199860000 171940000 215050000 103510000 111540000 156750000 96353000 60397000 9272 1730 9528 33496;33497;33498;33499;33500 50470;50471;50472;50473;50474;50475;50476;50477;50478 50473 9 PASGPIRPIVR RRKARQAKARRIAPRPASGPIRPIVRCTTV IAPRPASGPIRPIVRCTTVRYHTKVRAGRG R P A V R C 1 2 0 0 0 0 0 1 0 2 0 0 0 0 3 1 0 0 0 1 0 0 11 1 1161.6982 Q6NZ55;A8K4C8;P26373;J3QSB4 Q6NZ55 50 60 RPL13 60S ribosomal protein L13 yes no 2;3 0.022123 73.985 3 1 0.6415 0.88866 14.809 4 Median 0.71059 0.97186 7.0949 3 0 Plateau 0.42501 0.69779 NaN 1 0 Median 563010000 354680000 208330000 491390000 303920000 187470000 71614000 50754000 20860000 9273 604 9529 33501;33502;33503;33504 50479;50480;50481;50482 50481 4 PASISEEELLNLINK RAAAVVGINSETIMKPASISEEELLNLINK PASISEEELLNLINKLNNDDNVDGLLVQLP K P A N K L 1 0 2 0 0 0 3 0 0 2 3 1 0 0 1 2 0 0 0 0 0 0 15 0 1668.8934 B2R7W0;P13995 B2R7W0 99 113 MTHFD2 Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes no 2 0.010493 48.701 1 6.2309 8.5843 NaN 1 Median NaN NaN NaN 0 0 Median 6.2309 8.5843 NaN 1 0 Median 4998400 1272200 3726200 0 0 0 4998400 1272200 3726200 9274 709 9530 33505 50483 50483 0 PASTMGMGPLGK NAAQVKPLGKSPQVKPASTMGMGPLGKGAG QVKPASTMGMGPLGKGAGPVPPGKVGPATP K P A G K G 1 0 0 0 0 0 0 3 0 0 1 1 2 0 2 1 1 0 0 0 0 0 12 0 1145.5573 E7ETY2;B4DRA2;J3KQ96;Q13428;Q59FZ2 E7ETY2 508 519 TCOF1 Treacle protein no no 2 0.00053426 67.704 1 0.78388 1.1662 NaN 1 Median NaN NaN NaN 0 0 Median 0.78388 1.1662 NaN 1 0 Median 7493200 4040900 3452300 0 0 0 7493200 4040900 3452300 9275 1016;1135;1469 9531 33506 50484 50484 364;365 1 PATAIGVIGNFTDAER EAFTVDKDITLTNDKPATAIGVIGNFTDAE ATAIGVIGNFTDAERRKCEEEIAKLYKQLD K P A E R R 3 1 1 1 0 0 1 2 0 2 0 0 0 1 1 0 2 0 0 1 0 0 16 0 1630.8315 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;M1V490;M1VPF9;M1V481;M1VPF7;M1VRN0;M1VKI9;M1VE89 V9HW29 403 418 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5B-RET(NM_020630)_K22;R12;KIF5B-RET(NM_020975)_K22;R12;KIF5B-ALK_K17;A20;KIF5B-RET(NM_020630)_K15;R12;KIF5B-RET(NM_020975)_K15;R12;KIF5B-RET(NM_020630)_K16;R12;KIF5B-RET(NM_020975)_K16;R12 Kinesin-like protein;Kinesin-1 heavy chain yes no 2 0.012173 89.189 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9276 978 9532 33507 50485 50485 1 PATFTVNTK VTAYGPGLTHGVVNKPATFTVNTKDAGEGG HGVVNKPATFTVNTKDAGEGGLSLAIEGPS K P A T K D 1 0 1 0 0 0 0 0 0 0 0 1 0 1 1 0 3 0 0 1 0 0 9 0 977.5182 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5;H0Y5F3 P21333 1883 1891 FLNA;FLJ00119 Filamin-A yes no 2 0.0035495 76.679 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6568500 6568500 0 6568500 6568500 0 0 0 0 9277 1287 9533 33508 50486 50486 1 PAVAVIDNGR RRIQIKLLFDETQGKPAVAVIDNGRGMTSK ETQGKPAVAVIDNGRGMTSKQLNNWAVYRL K P A G R G 2 1 1 1 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 2 0 0 10 0 1010.5509 A6NHR9 A6NHR9 178 187 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.0077168 58.433 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4178100 4178100 0 4178100 4178100 0 0 0 0 9278 568 9534 33509;33510 50487;50488 50487 2 PAVCYQAITK ADPHFHHFLLSQTEKPAVCYQAITKKLKIC SQTEKPAVCYQAITKKLKICEEETGSTSIQ K P A T K K 2 0 0 0 1 1 0 0 0 1 0 1 0 0 1 0 1 0 1 1 0 0 10 0 1149.5852 Q49A26;D3DUE7;K7EPU6 Q49A26 228 237 GLYR1;N-PAC Putative oxidoreductase GLYR1 yes no 2 4.6849E-05 136.57 1 1.0675 1.3461 NaN 1 Median 1.0675 1.3461 NaN 1 0 Median NaN NaN NaN 0 0 Median 7698100 3041700 4656400 7698100 3041700 4656400 0 0 0 9279 1533 9535 33511 50489 50489 1 PAVFIPVNR PPPAAAPPLPRALAKPAVFIPVNRSPEMQE PRALAKPAVFIPVNRSPEMQEERLKLPILS K P A N R S 1 1 1 0 0 0 0 0 0 1 0 0 0 1 2 0 0 0 0 2 0 0 9 0 1011.5866 Q8IY37;F5H3Y4 Q8IY37 233 241 DHX37 Probable ATP-dependent RNA helicase DHX37 yes no 2 0.0042569 74.415 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1409800 1409800 0 0 0 0 1409800 1409800 0 9280 1627 9536 33512;33513 50490;50491 50491 2 PAVTTLVVK GGVRLVTPVTVSAVKPAVTTLVVKGTTGVT TVSAVKPAVTTLVVKGTTGVTTLGTVTGTV K P A V K G 1 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 2 0 0 3 0 0 9 0 926.58007 A6NEM2;P51610 A6NEM2 867 875 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 0.035672 42.599 1 0.9554 1.4042 NaN 1 Median NaN NaN NaN 0 0 Median 0.9554 1.4042 NaN 1 0 Median 5758300 2997100 2761200 0 0 0 5758300 2997100 2761200 9281 564 9537 33514 50492 50492 1 PCICQVIQNEQPHAK LTVPVITHCAHVFCKPCICQVIQNEQPHAK PCICQVIQNEQPHAKCPLCRNDIHEDNLLE K P C A K C 1 0 1 0 2 3 1 0 1 2 0 1 0 0 2 0 0 0 0 1 0 0 15 0 1820.8662 Q59GQ7;A0A0C4DGA6;Q14527;A8K5B6;H7C5K0 Q59GQ7 782 796 HLTF Helicase-like transcription factor yes no 3 2.3686E-05 66.215 2 0.69478 0.89175 12.001 2 Median 0.69478 0.89175 12.001 2 0 Median NaN NaN NaN 0 0 Median 10340000 6128600 4211600 10340000 6128600 4211600 0 0 0 9282 425 9538 33515;33516 50493;50494;50495 50494 3 PEFLEDPSVLTK ______________________________ ______________________________ M P E T K D 0 0 0 1 0 0 2 0 0 0 2 1 0 1 2 1 1 0 0 1 0 0 12 0 1373.7078 A0A024RBE7;P42167;G5E972;A0A024RBH7;P42166 P42166 2 13 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin no no 2 0.049098 39.148 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10974000 10974000 0 10974000 10974000 0 0 0 0 9283 1335;270 9539 33517 50496 50496 1 PFFAAISDEK GMPTIQITALEKITKPFFAAISDEKVQQKL EKITKPFFAAISDEKVQQKLLRMLFDLLVN K P F E K V 2 0 0 1 0 0 1 0 0 1 0 1 0 2 1 1 0 0 0 0 0 0 10 0 1123.555 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8 B2RWN5 1113 1122 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 1.1218E-08 159.58 2 1 0.97111 1.1908 9.0959 3 Plateau 0.91313 1.1499 9.1896 2 0 Median 0.68394 1.0299 NaN 1 0 Median 36050000 21117000 14933000 28061000 16102000 11959000 7989100 5014900 2974200 9284 748 9540 33518;33519;33520 50497;50498;50499;50500 50497 4 PFGSEEQLLPVEK RKGYEEVHVPALKPKPFGSEEQLLPVEKLP PKPFGSEEQLLPVEKLPKYAQAGFEGFKTL K P F E K L 0 0 0 0 0 1 3 1 0 0 2 1 0 1 2 1 0 0 0 1 0 0 13 0 1471.7559 O75643;A4FU77;Q9H8B9 O75643 454 466 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 8.9493E-37 225.79 4 0.60586 0.78375 19.206 3 Median 0.60586 0.78375 19.206 3 0 Median NaN NaN NaN 0 0 Median 39425000 22443000 16983000 39425000 22443000 16983000 0 0 0 9285 1206 9541 33521;33522;33523;33524 50501;50502;50503;50504;50505;50506 50502 6 PFLASLDGHR IRALNATKLERVFAKPFLASLDGHRDGVNC RVFAKPFLASLDGHRDGVNCLAKHPEKLAT K P F H R D 1 1 0 1 0 0 0 1 1 0 2 0 0 1 1 1 0 0 0 0 0 0 10 0 1111.5774 A0A087WT20;Q9NV06;B3KME9;E5RHM4 A0A087WT20 209 218 DCAF13 DDB1- and CUL4-associated factor 13 yes no 3 0.0016229 86.898 3 1.0235 1.3734 10.131 3 Median 1.0235 1.3734 10.131 3 0 Median NaN NaN NaN 0 0 Median 21094000 11324000 9769500 21094000 11324000 9769500 0 0 0 9286 331 9542 33525;33526;33527 50507;50508;50509;50510;50511;50512 50512 6 PFLLPVEAVYSVPGR AVDTYIPVPARDLEKPFLLPVEAVYSVPGR PFLLPVEAVYSVPGRGTVVTGTLERGILKK K P F G R G 1 1 0 0 0 0 1 1 0 0 2 0 0 1 3 1 0 0 1 3 0 0 15 0 1642.9083 P49411 P49411 257 271 TUFM Elongation factor Tu, mitochondrial yes yes 2 1.2097E-14 155.33 4 0.41158 0.56146 9.6388 4 Median 0.41158 0.56146 9.6388 4 0 Median NaN NaN NaN 0 0 Median 140500000 100730000 39765000 140500000 100730000 39765000 0 0 0 9287 1350 9543 33528;33529;33530;33531 50513;50514;50515;50516;50517;50518 50515 6 PFNGEDYTCITFQPDLSK TWMDNMGRAGEMELKPFNGEDYTCITFQPD GEDYTCITFQPDLSKFKMQSLDKDIVALMV K P F S K F 0 0 1 2 1 1 1 1 0 1 1 1 0 2 2 1 2 0 1 0 0 0 18 0 2130.9568 P11388 P11388 208 225 TOP2A DNA topoisomerase 2-alpha yes yes 2 2.4669E-205 328.41 4 2 0.87814 1.0902 15.409 6 Median 0.91709 1.1489 5.3952 4 0 Median 0.56358 0.85076 4.4802 2 0 Median 136650000 78702000 57949000 103370000 57674000 45697000 33281000 21029000 12253000 9288 1256 9544 33532;33533;33534;33535;33536;33537 50519;50520;50521;50522;50523;50524;50525;50526;50527;50528 50520 10 PFNLSQGK PSSPARVTKGCTIVKPFNLSQGKKRTFDET KGCTIVKPFNLSQGKKRTFDETVSTYVPLA K P F G K K 0 0 1 0 0 1 0 1 0 0 1 1 0 1 1 1 0 0 0 0 0 0 8 0 889.46577 Q643R0;Q9ULW0;B3KM90 Q643R0 306 313 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 0.0127 108.09 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9289 1581 9545 33538 50529 50529 1 PFSVDFFR YKKARAVFKSLQESRPFSVDFFRKMIQFEK KSLQESRPFSVDFFRKMIQFEKEQESCNMA R P F F R K 0 1 0 1 0 0 0 0 0 0 0 0 0 3 1 1 0 0 0 1 0 0 8 0 1013.4971 B3KQ21;Q9NYH9;B3KX32;Q9P1J8;J3KRR8;J3QSA7 B3KQ21 505 512 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 0.02509 54.157 1 0.70645 0.90371 NaN 1 Median NaN NaN NaN 0 0 Median 0.70645 0.90371 NaN 1 0 Median 3722200 1855900 1866400 0 0 0 3722200 1855900 1866400 9290 768 9546 33539 50530 50530 1 PFTIDVDK LHKYQKMLEPPPSAKPFTIDVDKKLEEGQK EPPPSAKPFTIDVDKKLEEGQKNIRLLRTE K P F D K K 0 0 0 2 0 0 0 0 0 1 0 1 0 1 1 0 1 0 0 1 0 0 8 0 933.48075 O95235 O95235 725 732 KIF20A Kinesin-like protein KIF20A yes yes 2 0.0036198 110.12 4 1 0.84093 1.0463 16.91 4 Median 0.84725 1.0652 4.3952 3 0 Median 0.50589 0.76948 NaN 1 0 Median 53791000 27952000 25839000 41813000 19776000 22037000 11977000 8175400 3802000 9291 1215 9547 33540;33541;33542;33543;33544 50531;50532;50533;50534;50535;50536;50537;50538 50536 8 PFVPNVHAAEFVPSFLR PLSSAFSRKLNVNAKPFVPNVHAAEFVPSF VPNVHAAEFVPSFLRGPTQPPTLPAGSGSN K P F L R G 2 1 1 0 0 0 1 0 1 0 1 0 0 3 3 1 0 0 0 3 0 0 17 0 1926.0152 Q8IYD1 Q8IYD1 58 74 GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes yes 3 0.00054732 79.393 2 1 0.52186 0.7214 2.8299 2 Median 0.52186 0.7214 2.8299 2 0 Median NaN NaN NaN 0 0 Median 12323000 5019400 7303300 7860400 5019400 2841100 4462300 0 4462300 9292 1629 9548 33545;33546;33547 50539;50540;50541 50539 3 PFYLVPK QNWLSAKVRKQLRLKPFYLVPKHAKEGNGF VRKQLRLKPFYLVPKHAKEGNGFQEETWRL K P F P K H 0 0 0 0 0 0 0 0 0 0 1 1 0 1 2 0 0 0 1 1 0 0 7 0 862.49528 Q8N884 Q8N884 356 362 MB21D1 Cyclic GMP-AMP synthase yes yes 2 0.032502 88.627 2 1.0944 1.41 27.586 2 Median 1.0944 1.41 27.586 2 0 Median NaN NaN NaN 0 0 Median 11187000 5548800 5638400 11187000 5548800 5638400 0 0 0 9293 1643 9549 33548;33549 50542;50543 50543 2 PGAEQSFLYGNHVLK LDYLAPYAKYKVWIKPGAEQSFLYGNHVLK PGAEQSFLYGNHVLKSGLGRITENTSQYQG K P G L K S 1 0 1 0 0 1 1 2 1 0 2 1 0 1 1 1 0 0 1 1 0 0 15 0 1658.8417 Q9Y221;J3QRD6;J3QRR4 Q9Y221 101 115 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog yes no 3 1.7085E-16 165.51 4 1 0.70362 0.88865 6.8928 5 Median 0.71436 0.90442 3.0544 4 0 Median 0.518 0.78023 NaN 1 0 Median 230690000 137690000 92999000 213550000 125590000 87960000 17135000 12097000 5038400 9294 1800 9550 33550;33551;33552;33553;33554 50544;50545;50546;50547;50548;50549;50550 50546 7 PGELSLLSYIRPDVK RQLGLEGAARALLEKPGELSLLSYIRPDVK PGELSLLSYIRPDVKGLSTLQDIEIGVQHI K P G V K G 0 1 0 1 0 0 1 1 0 1 3 1 0 0 2 2 0 0 1 1 0 0 15 1 1685.9352 B3KPM8;Q8N5C6 B3KPM8 343 357 SRBD1 S1 RNA-binding domain-containing protein 1 yes no 3 0.037099 45.54 1 0.44299 0.61633 NaN 1 Median 0.44299 0.61633 NaN 1 0 Median NaN NaN NaN 0 0 Median 2223500 885060 1338500 2223500 885060 1338500 0 0 0 9295 765 9551 33555 50551 50551 1 PGFSIADK SIGIYGLDFYVVLGRPGFSIADKKRRTGCI FYVVLGRPGFSIADKKRRTGCIGAKHRISK R P G D K K 1 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 0 0 0 0 0 0 8 0 833.42832 Q5VVD0;P62913;Q5VVC8;Q08ES8 Q5VVD0 137 144 RPL11 60S ribosomal protein L11 yes no 2 2.0181E-06 157.33 5 2 0.72769 1.0508 8.1136 5 Median 0.7799 0.98571 8.1173 3 0 Median 0.71463 1.0796 2.5738 2 0 Median 335200000 171710000 163500000 305300000 154420000 150880000 29898000 17285000 12612000 9296 1416 9552 33556;33557;33558;33559;33560;33561;33562 50552;50553;50554;50555;50556;50557;50558;50559;50560;50561 50555 10 PGFSIADKK SIGIYGLDFYVVLGRPGFSIADKKRRTGCI YVVLGRPGFSIADKKRRTGCIGAKHRISKE R P G K K R 1 0 0 1 0 0 0 1 0 1 0 2 0 1 1 1 0 0 0 0 0 0 9 1 961.52328 Q5VVD0;P62913;Q5VVC8;Q08ES8 Q5VVD0 137 145 RPL11 60S ribosomal protein L11 yes no 2;3 5.187E-09 146.03 8 1 0.6935 0.87707 9.6545 7 Median 0.7032 0.86252 9.0699 6 0 Median 0.63785 1.0076 NaN 1 0 Median 487920000 295900000 192020000 478760000 289760000 189000000 9164800 6142000 3022800 9297 1416 9553 33563;33564;33565;33566;33567;33568;33569;33570;33571 50562;50563;50564;50565;50566;50567;50568;50569;50570;50571;50572;50573;50574;50575 50571 14 PGGFDISLFYR LRDTGIFLDLMHLKKPGGFDISLFYRDIIS HLKKPGGFDISLFYRDIISIAEDEDLRVHF K P G Y R D 0 1 0 1 0 0 0 2 0 1 1 0 0 2 1 1 0 0 1 0 0 0 11 0 1270.6346 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356 A0A024R1N4 208 218 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.015098 43.308 1 0.6319 0.87198 NaN 1 Median NaN NaN NaN 0 0 Median 0.6319 0.87198 NaN 1 0 Median 5946400 3924100 2022200 0 0 0 5946400 3924100 2022200 9298 62 9554 33572 50576;50577 50577 2 PGGLGSSSLYGLGASRPR AFSGRGAQVRLSSARPGGLGSSSLYGLGAS LGSSSLYGLGASRPRVAVRSAYGGPVGAGI R P G P R V 1 2 0 0 0 0 0 5 0 0 3 0 0 0 2 4 0 0 1 0 0 0 18 1 1730.9064 CON__P08729;CON__Q3KNV1;P08729;B3KY79 CON__Q3KNV1 31 48 KRT7 Keratin, type II cytoskeletal 7 no no 3 0.028942 19.292 1 1.1362 1.631 NaN 1 Median NaN NaN NaN 0 0 Median 1.1362 1.631 NaN 1 0 Median 11219000 5989800 5228900 0 0 0 11219000 5989800 5228900 + 9299 968;957 9555 33573 50578 50578 1 PGGLLLGDVAPNFEANTTVGR ______________________________ GDVAPNFEANTTVGRIRFHDFLGDSWGILF M P G G R I 2 1 2 1 0 0 1 4 0 0 3 0 0 1 2 0 2 0 0 2 0 0 21 0 2097.0855 V9HWC7;P30041;B4DUK1 V9HWC7 2 22 HEL-S-128m;PRDX6 Peroxiredoxin-6 yes no 2 3.9944E-09 112.42 2 0.39425 0.54572 3.4068 2 Median 0.39425 0.54572 3.4068 2 0 Median NaN NaN NaN 0 0 Median 5948800 3681200 2267500 5948800 3681200 2267500 0 0 0 9300 1304 9556 33574;33575 50579;50580;50581 50579 3 PGHIINPIK QRAFQKLTTPKVVTKPGHIINPIKAEDVGY PKVVTKPGHIINPIKAEDVGYRSSSRSDLS K P G I K A 0 0 1 0 0 0 0 1 1 3 0 1 0 0 2 0 0 0 0 0 0 0 9 0 987.58655 Q9BVJ6;B4E343 Q9BVJ6 725 733 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 3 0.010481 64.207 2 0.76038 0.94869 NaN 1 Median 0.76038 0.94869 NaN 1 0 Median NaN NaN NaN 0 0 Median 23218000 17842000 5376500 23218000 17842000 5376500 0 0 0 9301 1719 9557 33576;33577 50582;50583 50583 2 PGHLQEGFGCVVTNR ______________________________ PGHLQEGFGCVVTNRFDQLFDDESDPFEVL M P G N R F 0 1 1 0 1 1 1 3 1 0 1 0 0 1 1 0 1 0 0 2 0 0 15 0 1669.7995 Q63HR1;Q5VU21;Q8NC51 Q63HR1 2 16 DKFZp686P17171;SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 3 0.012932 26.808 1 0.60929 0.83309 NaN 1 Median 0.60929 0.83309 NaN 1 0 Median NaN NaN NaN 0 0 Median 5061600 3078000 1983600 5061600 3078000 1983600 0 0 0 9302 1578 9558 33578 50584 50584 1 PGHVSPLQLTNIQVPQQALPTQR GTQQRLLVQTSVQAKPGHVSPLQLTNIQVP LTNIQVPQQALPTQRLVVQSAAPGSKGGQV K P G Q R L 1 1 1 0 0 5 0 1 1 1 3 0 0 0 4 1 2 0 0 2 0 0 23 0 2521.3765 P22670 P22670 155 177 RFX1 MHC class II regulatory factor RFX1 yes yes 3 5.5537E-05 62.325 2 0.53196 0.7392 24.018 2 Median 0.53196 0.7392 24.018 2 0 Median NaN NaN NaN 0 0 Median 8239300 5631800 2607500 8239300 5631800 2607500 0 0 0 9303 1291 9559 33579;33580 50585;50586;50587;50588;50589 50588 5 PGLNVVLEGPK TDRELQDAFSRGLLKPGLNVVLEGPKKAVN GLLKPGLNVVLEGPKKAVNDVNGLKQCLAE K P G P K K 0 0 1 0 0 0 1 2 0 0 2 1 0 0 2 0 0 0 0 2 0 0 11 0 1121.6445 Q6IB29;H7C2Q8;Q99848;B4DHA6;B4DRX8 Q6IB29 34 44 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 6.8917E-17 150.27 4 2 0.95384 1.231 7.1016 6 Median 0.9624 1.231 3.4206 4 0 Median 0.72501 1.1484 11.239 2 0 Median 472840000 250140000 222700000 279500000 137540000 141970000 193330000 112600000 80730000 9304 1123 9560 33581;33582;33583;33584;33585;33586 50590;50591;50592;50593;50594;50595;50596;50597;50598;50599;50600;50601 50594 12 PGLNVVLEGPKK TDRELQDAFSRGLLKPGLNVVLEGPKKAVN LLKPGLNVVLEGPKKAVNDVNGLKQCLAEF K P G K K A 0 0 1 0 0 0 1 2 0 0 2 2 0 0 2 0 0 0 0 2 0 0 12 1 1249.7394 Q6IB29;H7C2Q8;Q99848;B4DHA6;B4DRX8 Q6IB29 34 45 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2;3 2.6545E-05 108.98 6 4 0.74852 1.1573 17.1 8 Median 0.94913 1.1555 24.573 4 0 Median 0.71776 1.1573 6.3485 4 0 Median 585220000 337900000 247320000 449400000 256910000 192490000 135820000 80988000 54831000 9305 1123 9561 33587;33588;33589;33590;33591;33592;33593;33594;33595;33596 50602;50603;50604;50605;50606;50607;50608;50609;50610;50611;50612;50613;50614;50615 50607 12 PGLQTHGFIIR IESKLPVITCYADAKPGLQTHGFIIRVKDY ADAKPGLQTHGFIIRVKDYGCIVKFYNNVQ K P G I R V 0 1 0 0 0 1 0 2 1 2 1 0 0 1 1 0 1 0 0 0 0 0 11 0 1237.6931 Q14690;B4DH82;B4DES7 Q14690 541 551 PDCD11 Protein RRP5 homolog yes no 3 3.5986E-10 163.88 3 0.88664 1.1981 4.2163 3 Median 0.88664 1.1981 4.2163 3 0 Median NaN NaN NaN 0 0 Median 39680000 21036000 18644000 39680000 21036000 18644000 0 0 0 9306 1494 9562 33597;33598;33599 50616;50617;50618;50619;50620 50616 5 PGMVVTFAPVNVTTEVK IGTVPVGRVETGVLKPGMVVTFAPVNVTTE MVVTFAPVNVTTEVKSVEMHHEALSEALPG K P G V K S 1 0 1 0 0 0 1 1 0 0 0 1 1 1 2 0 3 0 0 5 0 0 17 0 1787.9492 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;P68104;A8K9C4;Q5VTE0;Q96RE1;A0A087WVQ9;Q53GE9;Q53G85;B4DV42;Q8IUB0;Q504Z0;Q53HR1;B4DNE0;Q9NZS6;Q53G89;Q6P4C9;B4E2C5;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q14222 Q6IPT9 274 290 EEF1A1;EEF1A1P5;EEF1A1L14;EEF1A Elongation factor 1-alpha;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 2 8.3391E-30 138.02 10 4 0.37182 0.46649 112.45 10 Median 0.35738 0.45158 15.302 8 0 Median 3.8424 6.1315 3.8631 2 0 Median 250100000 98207000 151890000 102110000 70102000 32013000 147990000 28106000 119880000 9307 1421 9563;9564 33600;33601;33602;33603;33604;33605;33606;33607;33608;33609;33610;33611;33612;33613 50621;50622;50623;50624;50625;50626;50627;50628;50629;50630;50631;50632;50633;50634;50635;50636;50637;50638;50639;50640;50641;50642;50643 50628 624 21 PGPREESEEEEDEDDEEEEEEEK ______________________________ EEEDEDDEEEEEEEKEKSLIVEGKREKKKV M P G E K E 0 1 0 3 0 0 14 1 0 0 0 1 0 0 2 1 0 0 0 0 0 0 23 1 2792.0428 B4DNW3 B4DNW3 2 24 yes yes 3 2.7765E-16 148.2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9308 843 9565 33614 50644 50644 1 PGPTAESASGPSEDPSVNFLK PGNWSPRPPRAGEARPGPTAESASGPSEDP SASGPSEDPSVNFLKNVGESVAAALSPLGI R P G L K N 2 0 1 1 0 0 2 2 0 0 1 1 0 1 4 4 1 0 0 1 0 0 21 0 2085.9855 Q13501;E7EMC7;E3WH17;E9PFW8;B4E3V2 Q13501 218 238 SQSTM1;SQSTM1-ALK Sequestosome-1;Tyrosine-protein kinase receptor yes no 2 0.051673 37.594 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9309 1471 9566 33615 50645 50645 1 PGPTPSGTNVGSSGR ______________________________ PGPTPSGTNVGSSGRSPSKAVAARAAGSTV M P G G R S 0 1 1 0 0 0 0 4 0 0 0 0 0 0 3 3 2 0 0 1 0 0 15 0 1369.6586 Q53FA5;P60468 Q53FA5 2 16 SEC61B Protein transport protein Sec61 subunit beta yes no 2 1.6515E-05 101.56 3 1 0.65244 0.86885 10.403 4 Median 0.65485 0.8758 12.718 3 0 Median 0.65005 0.86197 NaN 1 0 Median 18144000 11734000 6410000 15489000 10203000 5285700 2654700 1530400 1124200 9310 1387 9567 33616;33617;33618;33619 50646;50647;50648;50649;50650;50651;50652 50651 7 PGSIDSNNQLFAPGGR GSRPIDTSRLTKITKPGSIDSNNQLFAPGG GSIDSNNQLFAPGGRLSWGKGSSGGSGAKP K P G G R L 1 1 2 1 0 1 0 3 0 1 1 0 0 1 2 2 0 0 0 0 0 0 16 0 1628.7907 E7EX73;B4DSI9;E9PGM1;E7EUU4;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637;Q96I65 E7EX73 912 927 EIF4G1;EIF4G1 variant protein Eukaryotic translation initiation factor 4 gamma 1 yes no 2 5.2382E-10 146.5 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2320000 2320000 0 2320000 2320000 0 0 0 0 9311 747 9568 33620;33621 50653;50654 50653 2 PGSLLLCEGPCCGAFHLACLGLSR GVTAKKEYVCQLCEKPGSLLLCEGPCCGAF PCCGAFHLACLGLSRRPEGRFTCSECASGI K P G S R R 2 1 0 0 4 0 1 4 1 0 6 0 0 1 2 2 0 0 0 0 0 0 24 0 2644.2382 O96028;H0Y9U6 O96028 676 699 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 3 4.502E-10 95.591 3 0.83414 1.1039 39.448 3 Median 0.83414 1.1039 39.448 3 0 Median NaN NaN NaN 0 0 Median 43731000 25429000 18303000 43731000 25429000 18303000 0 0 0 9312 1228 9569 33622;33623;33624 50655;50656;50657;50658 50658 4 PGSVPLVSEK EARRRKEVNRIKHSKPGSVPLVSEKKKHVV IKHSKPGSVPLVSEKKKHVVAVVK______ K P G E K K 0 0 0 0 0 0 1 1 0 0 1 1 0 0 2 2 0 0 0 2 0 0 10 0 1011.5601 A0A087WT20;Q9NV06 A0A087WT20 579 588 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2 0.0012639 78.556 4 1 0.9434 1.201 10.635 4 Median 0.94586 1.201 4.8261 3 0 Plateau 0.97622 1.4429 NaN 1 0 Median 47894000 19587000 28307000 41696000 16737000 24958000 6198100 2849400 3348600 9313 331 9570 33625;33626;33627;33628;33629 50659;50660;50661;50662;50663;50664;50665;50666 50665 8 PGTVALR SAPSTGGVKKPHRYRPGTVALREIRRYQKS VKKPHRYRPGTVALREIRRYQKSTELLIRK R P G L R E 1 1 0 0 0 0 0 1 0 0 1 0 0 0 1 0 1 0 0 1 0 0 7 0 712.42317 B2R4P9;P84243;B4E380;K7EK07;Q16695;Q6NXT2;B2R6Y1;A8K4Y7;K7EMV3;B4DEB1;K7ES00;K7EP01;Q6TXQ4;P68431;Q5TEC6;Q71DI3 B2R4P9 44 50 H3F3A;H3F3B;HIST3H3;H3F3C;HIST1H3A;HIST2H3PS2;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.3C;Histone H3.1;Histone H3.2 no no 2 0.04948 50.966 1 0.54112 0.77197 NaN 1 Median NaN NaN NaN 0 0 Median 0.54112 0.77197 NaN 1 0 Median 9773500 6347400 3426200 0 0 0 9773500 6347400 3426200 9314 685;1424;1605;1577 9571 33630 50667 50667 1 PGTYVIYVR ENEDGTYDIFYTAAKPGTYVIYVRFGGVDI FYTAAKPGTYVIYVRFGGVDIPNSPFTVMA K P G V R F 0 1 0 0 0 0 0 1 0 1 0 0 0 0 1 0 1 0 2 2 0 0 9 0 1066.5811 O75369;A0A024R321;Q68CT4;E7EN95 O75369 1681 1689 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.025219 52.716 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9315 1199 9572 33631 50668 50668 1 PGVAAPPEVAPAPK HEEEKTPEVPPAQPKPGVAAPPEVAPAPKS KPGVAAPPEVAPAPKSWASNKQGGQGDGIQ K P G P K S 4 0 0 0 0 0 1 1 0 0 0 1 0 0 5 0 0 0 0 2 0 0 14 0 1299.7187 E7EPN9;Q9Y520 E7EPN9 108 121 PRRC2C Protein PRRC2C yes no 2 9.6071E-05 73.781 2 0.92934 1.1721 21.153 2 Median 0.92934 1.1721 21.153 2 0 Median NaN NaN NaN 0 0 Median 8607600 4441400 4166300 8607600 4441400 4166300 0 0 0 9316 1010 9573 33632;33633 50669;50670 50669 2 PHFNQLFK SLGTYASLHGRIYCKPHFNQLFKSKGNYDE HGRIYCKPHFNQLFKSKGNYDEGFGHRPHK K P H F K S 0 0 1 0 0 1 0 0 1 0 1 1 0 2 1 0 0 0 0 0 0 0 8 0 1029.5396 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2 F8VQE1 279 286 LIMA1 LIM domain and actin-binding protein 1 yes no 2;3 0.00012747 118.69 4 0.67902 0.85842 6.364 3 Median 0.67902 0.85842 6.364 3 0 Median NaN NaN NaN 0 0 Median 180950000 100510000 80440000 180950000 100510000 80440000 0 0 0 9317 834 9574 33634;33635;33636;33637 50671;50672;50673;50674;50675 50673 5 PHLITHGFSSR MRHDIPDLGTMSEAKPHLITHGFSSRLGKR SEAKPHLITHGFSSRLGKRVSDILRYLFPV K P H S R L 0 1 0 0 0 0 0 1 2 1 1 0 0 1 1 2 1 0 0 0 0 0 11 0 1250.652 H0Y714;Q96G21;E7ENR5;B8ZZ47;B9A008 H0Y714 173 183 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 3;4 0.0018139 104.43 5 0.86102 1.1645 7.1064 5 Median 0.86102 1.1645 7.1064 5 0 Median NaN NaN NaN 0 0 Median 75795000 40389000 35405000 75795000 40389000 35405000 0 0 0 9318 1094 9575 33638;33639;33640;33641;33642 50676;50677;50678;50679;50680;50681 50677 5 PHSVSLNDTETR AVPLNASKQDGPMPKPHSVSLNDTETRKLM MPKPHSVSLNDTETRKLMEECKRLQGEMMK K P H T R K 0 1 1 1 0 0 1 0 1 0 1 0 0 0 1 2 2 0 0 1 0 0 12 0 1354.6477 A8KA83;Q9P0L0 A8KA83 155 166 VAPA Vesicle-associated membrane protein-associated protein A yes no 2 0.0051098 51.092 2 1.4244 1.8371 0.96807 2 Median NaN NaN NaN 0 0 Median 1.4244 1.8371 0.96807 2 0 Median 4703200 1920800 2782400 0 0 0 4703200 1920800 2782400 9319 653 9576 33643;33644 50682;50683 50683 2 PHSVSLNDTETRK AVPLNASKQDGPMPKPHSVSLNDTETRKLM PKPHSVSLNDTETRKLMEECKRLQGEMMKL K P H R K L 0 1 1 1 0 0 1 0 1 0 1 1 0 0 1 2 2 0 0 1 0 0 13 1 1482.7427 A8KA83;Q9P0L0 A8KA83 155 167 VAPA Vesicle-associated membrane protein-associated protein A yes no 2;3 9.3467E-05 103.11 4 0.97803 1.2711 79.138 3 Plateau 0.97803 1.2711 79.138 3 0 Plateau NaN NaN NaN 0 0 Median 31311000 19576000 11735000 31311000 19576000 11735000 0 0 0 9320 653 9577 33645;33646;33647;33648 50684;50685;50686;50687;50688 50685 5 PIEIQWVKPEPK HDPTADVFVTPAEEKPIEIQWVKPEPKVDL EEKPIEIQWVKPEPKVDLKARKKRIYKRQR K P I P K V 0 0 0 0 0 1 2 0 0 2 0 2 0 0 3 0 0 1 0 1 0 0 12 1 1462.8184 Q8TDN6;A0JLQ5 Q8TDN6 315 326 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 3 0.01319 25.53 1 0.73598 1.1224 NaN 1 Median NaN NaN NaN 0 0 Median 0.73598 1.1224 NaN 1 0 Median 5124000 2610100 2513900 0 0 0 5124000 2610100 2513900 9321 1659 9578 33649 50689 50689 1 PIEVQVGGR FPRAMEALARRILSKPIEVQVGGRSVVCSD RRILSKPIEVQVGGRSVVCSDVEQQVIVIE K P I G R S 0 1 0 0 0 1 1 2 0 1 0 0 0 0 1 0 0 0 0 2 0 0 9 0 953.52943 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6 A8K6X3 578 586 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.00404 75.109 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2856400 0 2856400 2856400 0 2856400 0 0 0 9322 424 9579 33650 50690 50690 1 PIFGGTVYHSPVSR NTTTMSNATANSSIRPIFGGTVYHSPVSRL RPIFGGTVYHSPVSRLPPSGSKPVAASTCS R P I S R L 0 1 0 0 0 0 0 2 1 1 0 0 0 1 2 2 1 0 1 2 0 0 14 0 1515.7834 A0A024RC67;O43663;G3V3N7;H0YNE4 A0A024RC67 504 517 PRC1 Protein regulator of cytokinesis 1 yes no 3 0.041573 18.833 1 0.38488 0.50253 NaN 1 Median NaN NaN NaN 0 0 Median 0.38488 0.50253 NaN 1 0 Median 3290400 2589300 701110 0 0 0 3290400 2589300 701110 9323 288 9580 33651 50691 50691 1 PIFGLTSNYK SNKDMAGKLINEWSRPIFGLTSNYKGMTRE NEWSRPIFGLTSNYKGMTREEREQRDLEQM R P I Y K G 0 0 1 0 0 0 0 1 0 1 1 1 0 1 1 1 1 0 1 0 0 0 10 0 1138.6023 A0A1B0GW95;B4DGM5;B4DL52;Q96ST2 A0A1B0GW95 77 86 IWS1 Protein IWS1 homolog yes no 2 0.017903 47.187 1 0.82391 1.056 NaN 1 Median 0.82391 1.056 NaN 1 0 Median NaN NaN NaN 0 0 Median 3537700 1403200 2134500 3537700 1403200 2134500 0 0 0 9324 521 9581 33652 50692 50692 1 PIFTDESYLELYR VWQRSRDICLKKFIKPIFTDESYLELYRKQ IKPIFTDESYLELYRKQKKHLNTQQLTAFQ K P I Y R K 0 1 0 1 0 0 2 0 0 1 2 0 0 1 1 1 1 0 2 0 0 0 13 0 1644.8035 Q01780;B4DKG8;B4DFE4 Q01780 484 496 EXOSC10 Exosome component 10 yes no 2 0.0044004 111.27 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 604260 0 604260 604260 0 604260 0 0 0 9325 1433 9582 33653 50693 50693 1 PIFTLNAHNDEISGLDLSSQIK TDDGFVYNLDARSDKPIFTLNAHNDEISGL HNDEISGLDLSSQIKGCLVTASADKYVKIW K P I I K G 1 0 2 2 0 1 1 1 1 3 3 1 0 1 1 3 1 0 0 0 0 0 22 0 2411.2333 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DNL1;B4DJV5 Q9BV37 377 398 PWP1 Periodic tryptophan protein 1 homolog yes no 3 5.8442E-05 73.722 1 1.0337 1.3481 NaN 1 Median 1.0337 1.3481 NaN 1 0 Median NaN NaN NaN 0 0 Median 3254700 1644800 1609900 3254700 1644800 1609900 0 0 0 9326 273 9583 33654 50694 50694 1 PIKPSPPYFGLLLASVGR PFFVGVQYHPEFLSRPIKPSPPYFGLLLAS PSPPYFGLLLASVGRLSHYLQKGCRLSPRD R P I G R L 1 1 0 0 0 0 0 2 0 1 3 1 0 1 4 2 0 0 1 1 0 0 18 1 1911.0982 P17812;B4E1E0 P17812 533 550 CTPS1 CTP synthase 1;CTP synthase yes no 3 0.00013866 85.046 2 0.34716 0.45566 21.009 2 Median 0.34716 0.45566 21.009 2 0 Median NaN NaN NaN 0 0 Median 7189100 5392800 1796400 7189100 5392800 1796400 0 0 0 9327 1278 9584 33655;33656 50695;50696;50697;50698 50698 4 PILQVINIRPITTGNSPPR GAIAAIMQKGDTNIKPILQVINIRPITTGN VINIRPITTGNSPPRYRLLMSDGLNTLSSF K P I P R Y 0 2 2 0 0 1 0 1 0 4 1 0 0 0 4 1 2 0 0 1 0 0 19 1 2085.2059 P27694;I3L524;I3L2M5 P27694 23 41 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 3 0.028024 17.863 1 0.58242 0.7709 NaN 1 Median 0.58242 0.7709 NaN 1 0 Median NaN NaN NaN 0 0 Median 6542300 4284200 2258100 6542300 4284200 2258100 0 0 0 9328 1302 9585 33657 50699 50699 1 PINFSVILK QQVDFNRKPGRMSSKPINFSVILKLSNVNL GRMSSKPINFSVILKLSNVNLQEKAYRDGL K P I L K L 0 0 1 0 0 0 0 0 0 2 1 1 0 1 1 1 0 0 0 1 0 0 9 0 1029.6223 Q9Y3T9;B3KNC3;Q9H9J5;B4DY21 Q9Y3T9 499 507 NOC2L Nucleolar complex protein 2 homolog yes no 2 0.0089275 77.318 3 2 0.7704 0.97291 2.3947 3 Median 0.7704 0.97291 2.3947 3 0 Median NaN NaN NaN 0 0 Median 28957000 19364000 9593400 21668000 12075000 9593400 7288600 7288600 0 9329 1820 9586 33658;33659;33660;33661;33662 50700;50701;50702;50703;50704;50705;50706;50707 50704 8 PINGAIFIFNPR RVTIHKTFEGNLTTKPINGAIFIFNPRTGQ TTKPINGAIFIFNPRTGQLFLKIIHTSVWA K P I P R T 1 1 2 0 0 0 0 1 0 3 0 0 0 2 2 0 0 0 0 0 0 0 12 0 1357.7507 Q6P2Q9;B4DK16;Q6JH02 Q6P2Q9 1802 1813 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0022456 64.711 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6286100 6286100 0 6286100 6286100 0 0 0 0 9330 1592 9587 33663 50708 50708 1 PIPILAAGFCSDK IQIATPGKGKKSTPKPIPILAAGFCSDKMS PKPIPILAAGFCSDKMSLLLVYGSWFQPTI K P I D K M 2 0 0 1 1 0 0 1 0 2 1 1 0 1 2 1 0 0 0 0 0 0 13 0 1387.717 Q15061;C9IZK7 Q15061 332 344 WDR43 WD repeat-containing protein 43 yes no 2 0.0001964 96.113 4 2 0.91597 1.1561 31.077 6 Median 0.93655 1.1836 2.4317 4 0 Median 0.43955 0.65731 18.348 2 0 Median 114080000 62270000 51807000 95355000 49525000 45830000 18723000 12745000 5977500 9331 1505 9588 33664;33665;33666;33667;33668;33669 50709;50710;50711;50712;50713;50714;50715;50716;50717;50718 50714 10 PISSFADFER EDCRGNILIPGLSQKPISSFADFERHFLPA GLSQKPISSFADFERHFLPASRNRTVGATR K P I E R H 1 1 0 1 0 0 1 0 0 1 0 0 0 2 1 2 0 0 0 0 0 0 10 0 1167.556 Q14807;A0A024R632;B7Z9T5;H3BRB3;H3BTH5 Q14807 214 223 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 0.0040687 109.44 1 1 0.53713 0.7055 NaN 1 Median NaN NaN NaN 0 0 Median 0.53713 0.7055 NaN 1 0 Median 4303300 2556700 1746600 0 0 0 4303300 2556700 1746600 9332 1497 9589 33670;33671 50719;50720 50719 2 PIVLELIPLK YGQCSEICGAIHSFKPIVLELIPLKIFEMG IHSFKPIVLELIPLKIFEMGPVFTL_____ K P I L K I 0 0 0 0 0 0 1 0 0 2 3 1 0 0 2 0 0 0 0 1 0 0 10 0 1133.7424 A0A0E3JSF1;A0A0E3JG40 A0A0E3JSF1 208 217 yes no 2 4.7495E-10 171.53 4 0.69878 0.89141 8.022 4 Linear 0.69878 0.89141 8.022 4 0 Linear NaN NaN NaN 0 0 Median 8972000 5400900 3571100 8972000 5400900 3571100 0 0 0 9333 437 9590 33672;33673;33674;33675 50721;50722;50723;50724;50725;50726;50727;50728 50724 8 PLDLRPK QKENLRKFYKGKKYKPLDLRPKKTRAMRRR FYKGKKYKPLDLRPKKTRAMRRRLNKHEEN K P L P K K 0 1 0 1 0 0 0 0 0 0 2 1 0 0 2 0 0 0 0 0 0 0 7 1 837.50724 P42766 P42766 80 86 RPL35 60S ribosomal protein L35 yes yes 2 0.037753 124.37 1 1 0.52073 0.77425 52.497 2 Median 0.8544 1.1223 NaN 1 0 Median 0.31737 0.53415 NaN 1 0 Median 453100000 258530000 194570000 367970000 190590000 177370000 85139000 67939000 17200000 9334 1340 9591 33676;33677 50729;50730 50729 2 PLEPVSTVQVEPAVK ETATLAQKPSQDTEKPLEPVSTVQVEPAVK PLEPVSTVQVEPAVKTVNQQTMAAPVVKEE K P L V K T 1 0 0 0 0 1 2 0 0 0 1 1 0 0 3 1 1 0 0 4 0 0 15 0 1591.8821 E7EPN9;Q9Y520;B4DM27 E7EPN9 1108 1122 PRRC2C Protein PRRC2C yes no 2 3.7412E-10 109.6 5 0.76149 1.0338 10.683 3 Plateau 0.76149 1.0338 10.683 3 0 Plateau NaN NaN NaN 0 0 Median 10574000 6332200 4241600 10574000 6332200 4241600 0 0 0 9335 1010 9592 33678;33679;33680;33681;33682 50731;50732;50733;50734;50735;50736;50737;50738 50737 7 PLFESSICGDSAADVSQSEENGQKPENK PEIKLKITKTYMNGKPLFESSICGDSAADV DVSQSEENGQKPENKARRNRKRSIKYDSLL K P L N K A 2 0 2 2 1 2 4 2 0 1 1 2 0 1 2 5 0 0 0 1 0 0 28 1 3022.3462 O96028;Q05CW4;D6R9V2;D6RIS1 O96028 137 164 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 3 6.403E-05 68.361 3 0.86414 1.0408 NaN 1 Median 0.86414 1.0408 NaN 1 0 Median NaN NaN NaN 0 0 Median 5415200 2231300 3183900 5415200 2231300 3183900 0 0 0 9336 1228 9593 33683;33684;33685 50739;50740;50741 50741 3 PLFPHVLCHNCAVEFNFGQK LGVAFKISKEVLAGRPLFPHVLCHNCAVEF VLCHNCAVEFNFGQKEKPYFPIPEEYTFIQ R P L Q K E 1 0 2 0 2 1 1 1 2 0 2 1 0 3 2 0 0 0 0 2 0 0 20 0 2413.146 Q96BA7;B3KX72;B4DLR3;Q00839;Q7Z4Q5 Q96BA7 340 359 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U no no 3 0.00020931 73.168 1 0.59234 0.76861 NaN 1 Median 0.59234 0.76861 NaN 1 0 Median NaN NaN NaN 0 0 Median 9903600 5357800 4545700 9903600 5357800 4545700 0 0 0 9337 788 9594 33686 50742 50742 1 PLIQEESDTIVSSSK ASADDIGTLICKNKKPLIQEESDTIVSSSK PLIQEESDTIVSSSKSALHSSVPKSTNDRD K P L S K S 0 0 0 1 0 1 2 0 0 2 1 1 0 0 1 4 1 0 0 1 0 0 15 0 1631.8254 E7ETD6;Q12830;F5GXF5 E7ETD6 1223 1237 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.014099 65.234 1 1 1.7672 2.4612 17.792 2 Median 2.1267 2.7912 NaN 1 0 Median 1.4685 2.1703 NaN 1 0 Median 8888400 3511700 5376700 2484500 923890 1560600 6403900 2587800 3816100 9338 1015 9595 33687;33688 50743;50744 50743 2 PLISVYSEK ______________________________ ______________________________ R P L E K G 0 0 0 0 0 0 1 0 0 1 1 1 0 0 1 2 0 0 1 1 0 0 9 0 1034.5648 P36578;Q59GY2;B4DFI6;B4DMJ6;Q53G74;H3BTP7;H3BU31;B4DP82 P36578 6 14 RPL4 60S ribosomal protein L4 yes no 2 1.1751E-06 176.09 4 2 0.68039 0.95506 12.852 6 Median 0.70348 0.92133 10.934 4 0 Median 0.66881 1.0693 0.79501 2 0 Median 631300000 392380000 238920000 538810000 339120000 199690000 92490000 53258000 39232000 9339 1325 9596 33689;33690;33691;33692;33693;33694 50745;50746;50747;50748;50749;50750;50751;50752;50753;50754;50755;50756;50757;50758;50759;50760;50761;50762;50763 50747 19 PLLASCGLDR GLAGSVRGLQCHPSKPLLASCGLDRVLRIH CHPSKPLLASCGLDRVLRIHRIQNPRGLEH K P L D R V 1 1 0 1 1 0 0 1 0 0 3 0 0 0 1 1 0 0 0 0 0 0 10 0 1100.5648 Q6RFH5;E9PS41 Q6RFH5 282 291 WDR74 WD repeat-containing protein 74 yes no 2 0.00017839 127.46 3 1 0.65799 0.89489 NaN 1 Median 0.65799 0.89489 NaN 1 0 Median NaN NaN NaN 0 0 Median 46143000 30218000 15926000 43085000 27160000 15926000 3058200 3058200 0 9340 1598 9597 33695;33696;33697;33698 50764;50765;50766;50767;50768;50769 50764 6 PLLFMDLLDER RRRTAHAFKISKIYKPLLFMDLLDERTLVA KIYKPLLFMDLLDERTLVAVERPLDDIIAQ K P L E R T 0 1 0 2 0 0 1 0 0 0 4 0 1 1 1 0 0 0 0 0 0 0 11 0 1360.7061 Q969X6;H3BSH7;A0A0J9YWM9;A0A0J9YXV4 Q969X6 649 659 CIRH1A Cirhin yes no 2 0.0013879 98.943 5 1 0.65753 0.88223 27.738 3 Median 0.73315 1.0122 19.433 2 0 Median 0.47161 0.66683 NaN 1 0 Median 12442000 7031400 5410700 5061700 2106200 2955500 7380400 4925200 2455200 9341 1680 9598;9599 33699;33700;33701;33702;33703;33704 50770;50771;50772;50773;50774;50775;50776;50777 50773 757 8 PLLFSSASSQNHIPIEPDYK LGEDVSDSGTSKPSKPLLFSSASSQNHIPI SASSQNHIPIEPDYKFSTLLMMLKDMHDSK K P L Y K F 1 0 1 1 0 1 1 0 1 2 2 1 0 1 3 4 0 0 1 0 0 0 20 0 2242.127 B2RWP5;Q96L73;Q8NB95;Q96MN8 B2RWP5 618 637 NSD1 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 3 0.0024385 70.114 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4948200 1701400 3246900 4948200 1701400 3246900 0 0 0 9342 749 9600 33705;33706 50778;50779 50778 2 PLLGGPFSLTTHTGER KAEKLEKERQRHIGKPLLGGPFSLTTHTGE LLGGPFSLTTHTGERKTDKDYLGQWLLIYF K P L E R K 0 1 0 0 0 0 1 3 1 0 3 0 0 1 2 1 3 0 0 0 0 0 16 0 1681.8788 B3KQB1;J3QL56;O75880 B3KQB1 134 149 SCO1 Protein SCO1 homolog, mitochondrial yes no 3 0.00035639 85.619 2 1 1.0777 1.4786 103.45 2 Median 0.51133 0.71145 NaN 1 0 Median 2.2713 3.0728 NaN 1 0 Median 17932000 12419000 5512700 12500000 11009000 1491100 5431700 1410100 4021600 9343 769 9601 33707;33708;33709 50780;50781;50782 50780 3 PLLQEELGR KVWKGLFYCMWMQDKPLLQEELGRTISQLV MWMQDKPLLQEELGRTISQLVHAFQTTEAQ K P L G R T 0 1 0 0 0 1 2 1 0 0 3 0 0 0 1 0 0 0 0 0 0 0 9 0 1053.5819 Q6PJJ2;P56182;B4DZM3;Q53FR7 Q6PJJ2 74 82 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 2 0.0044377 113.26 3 2 0.73607 1.0747 1.3783 3 Plateau 0.80531 1.0535 NaN 1 0 Median 0.73463 1.0747 1.0776 2 0 Median 38653000 23581000 15073000 10904000 7336600 3567200 27750000 16244000 11506000 9344 1381 9602 33710;33711;33712;33713;33714 50783;50784;50785;50786;50787;50788 50784 6 PLLQVSR KLRNWQWWRLFTKVKPLLQVSRQEEEMMAK WRLFTKVKPLLQVSRQEEEMMAKEEELVKV K P L S R Q 0 1 0 0 0 1 0 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 7 0 811.49159 A0A024R1N1;P35579;Q86XU5;B4E3S1;A0A0U4BW16 A0A024R1N1 836 842 MYH9 Myosin-9 no no 2 0.0033236 143.02 3 0.99348 1.3247 6.0557 3 Median 0.99348 1.3247 6.0557 3 0 Median NaN NaN NaN 0 0 Median 44040000 20877000 23163000 44040000 20877000 23163000 0 0 0 9345 61;490 9603 33715;33716;33717 50789;50790;50791;50792;50793;50794 50792 6 PLLSAFADIIHSLK VQSLCAKHGIEYQSKPLLSAFADIIHSLKE KPLLSAFADIIHSLKESGQLWLDAYLHQ__ K P L L K E 2 0 0 1 0 0 0 0 1 2 3 1 0 1 1 2 0 0 0 0 0 0 14 0 1523.8712 F5H3P6;F5H3U5;B7Z5F3;A0A0A0MR51;O60427 F5H3P6 120 133 FADS1 Fatty acid desaturase 1 yes no 3 0.0020388 51.939 2 0.316 0.40625 3.7171 2 Median 0.316 0.40625 3.7171 2 0 Median NaN NaN NaN 0 0 Median 3974700 3041300 933400 3974700 3041300 933400 0 0 0 9346 386 9604 33718;33719 50795;50796 50796 2 PLLSFDPAFDELPHYALLK LAELKMTGNCLKGSRPLLSFDPAFDELPHY FDPAFDELPHYALLKELLIQIFSTPRYHPK R P L L K E 2 0 0 2 0 0 1 0 1 0 5 1 0 2 3 1 0 0 1 0 0 0 19 0 2185.1459 Q8TDN6;A0JLQ5 Q8TDN6 164 182 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 3 3.4715E-05 85.176 2 0.94721 1.2035 1.0909 2 Median 0.94721 1.2035 1.0909 2 0 Median NaN NaN NaN 0 0 Median 13114000 7606000 5507900 13114000 7606000 5507900 0 0 0 9347 1659 9605 33720;33721 50797;50798 50797 1 PLNYQILLK IAQFSVAMADDSLWKPLNYQILLKTRDSSP DDSLWKPLNYQILLKTRDSSPKVRFAALIT K P L L K T 0 0 1 0 0 1 0 0 0 1 3 1 0 0 1 0 0 0 1 0 0 0 9 0 1100.6594 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8;Q8N7L7;Q96ES5 B2RWN5 2064 2072 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 1.9397E-29 194.27 4 2 0.83369 1.0306 13.464 6 Median 0.84144 1.0527 2.911 4 0 Median 0.54907 0.82189 7.4585 2 0 Median 104370000 57535000 46836000 85293000 44523000 40770000 19078000 13012000 6066000 9348 748 9606 33722;33723;33724;33725;33726;33727 50799;50800;50801;50802;50803;50804;50805;50806;50807;50808;50809 50803 10 PLPEPSEQEGESVK ______________________________ MPLPEPSEQEGESVKAGQEPSPKPGTDVIP M P L V K A 0 0 0 0 0 1 4 1 0 0 1 1 0 0 3 2 0 0 0 1 0 0 14 0 1524.7308 Q4VC44;I3L0R3;I3L231;I3L4I0 Q4VC44 2 15 FLYWCH1;FLYWCH2 FLYWCH-type zinc finger-containing protein 1 no no 2 5.3821E-08 139.31 3 0.65521 0.82751 6.4769 3 Median 0.65521 0.82751 6.4769 3 0 Median NaN NaN NaN 0 0 Median 24712000 15837000 8875700 24712000 15837000 8875700 0 0 0 9349 1536 9607 33728;33729;33730 50810;50811;50812;50813;50814 50811 5 PLPPAAIESPAVAAPAYSR WSQWLGGSSWPGYVRPLPPAAIESPAVAAP AAIESPAVAAPAYSRALSRQLSSGVSEIRH R P L S R A 6 1 0 0 0 0 1 0 0 1 1 0 0 0 5 2 0 0 1 1 0 0 19 0 1877.0047 V9HW43;P04792;B4DL87;F8WE04 V9HW43 57 75 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 2 0.0024112 84.566 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 813920 813920 0 813920 813920 0 0 0 0 9350 1232 9608 33731 50815 50815 1 PLPSFCPPR WGASCPELRPHVEPRPLPSFCPPRRLDQCP PHVEPRPLPSFCPPRRLDQCPESPLQRCPP R P L P R R 0 1 0 0 1 0 0 0 0 0 1 0 0 1 4 1 0 0 0 0 0 0 9 0 1069.5379 Q5T749 Q5T749 378 386 KPRP Keratinocyte proline-rich protein yes yes 2 0.044403 46.426 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9351 1571 9609 33732 50816 50816 1 PLQYQSTVASGTVAR YRQKERRNSRGKIIKPLQYQSTVASGTVAR PLQYQSTVASGTVARVEPNIKWFGNTRVIK K P L A R V 2 1 0 0 0 2 0 1 0 0 1 0 0 0 1 2 2 0 1 2 0 0 15 0 1576.8209 Q5T0F3;Q13823 Q5T0F3 59 73 GNL2 Nucleolar GTP-binding protein 2 yes no 2 1.5722E-22 140.91 4 1 0.8178 1.0972 33.747 5 Median 0.89505 1.215 17.457 4 0 Median 0.40408 0.61981 NaN 1 0 Median 77625000 42492000 35133000 59282000 29773000 29508000 18343000 12719000 5624500 9352 1477 9610 33733;33734;33735;33736;33737 50817;50818;50819;50820;50821;50822;50823;50824 50822 8 PLRLPLQDVYK EALDCILPPTRPTDKPLRLPLQDVYKIGGI PTDKPLRLPLQDVYKIGGIGTVPVGRVETG K P L Y K I 0 1 0 1 0 1 0 0 0 0 3 1 0 0 2 0 0 0 1 1 0 0 11 1 1340.7816 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;P68104;A8K9C4;Q5VTE0;Q96RE1;A0A087WVQ9;Q53GE9;Q53GA1;Q53G85;B4DV42;Q8IUB0;Q504Z0;Q53HR1;B4DNE0;Q9NZS6;A0A087WV01;Q9H2I7;Q6P4C9;B4E2C5;Q96C29;Q8TBL1;Q6P082;Q96CD8;A9X7H1;Q05639;Q59GP5 Q6IPT9 245 255 EEF1A1;EEF1A1P5;EEF1A1L14;EEF1A2 Elongation factor 1-alpha;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 yes no 3 3.4577E-08 107.03 3 1 0.41678 0.5521 153.8 3 Median 0.39026 0.51723 9.2269 2 0 Median 4.1299 7.405 NaN 1 0 Median 972660000 649510000 323150000 876000000 629890000 246110000 96659000 19622000 77037000 9353 1421 9611 33738;33739;33740;33741 50825;50826;50827;50828;50829;50830;50831;50832 50829 8 PLSAVPK HLSTSSVFRLVSRPKPLSAVPKQVVTGTVL FRLVSRPKPLSAVPKQVVTGTVLTRSVFIN K P L P K Q 1 0 0 0 0 0 0 0 0 0 1 1 0 0 2 1 0 0 0 1 0 0 7 0 710.43268 Q8WYP5;B3KVE5 Q8WYP5 1035 1041 AHCTF1 Protein ELYS yes no 2 0.030567 63.148 1 0.81127 0.99691 NaN 1 Median 0.81127 0.99691 NaN 1 0 Median NaN NaN NaN 0 0 Median 18584000 10514000 8070400 18584000 10514000 8070400 0 0 0 9354 1670 9612 33742 50833 50833 1 PLSPLHSLTPYQVPFNAVALR SILSYLSQLQPPMPKPLSPLHSLTPYQVPF SLTPYQVPFNAVALRITHSDVAPTHILYAV K P L L R I 2 1 1 0 0 1 0 0 1 0 4 0 0 1 4 2 1 0 1 2 0 0 21 0 2319.2739 Q5SY16 Q5SY16 538 558 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 yes yes 3 2.7754E-06 95.554 3 0.41276 0.55895 2.7715 3 Plateau 0.41276 0.55895 2.7715 3 0 Plateau NaN NaN NaN 0 0 Median 17850000 13082000 4768100 17850000 13082000 4768100 0 0 0 9355 1566 9613 33743;33744;33745 50834;50835;50836 50834 3 PLSSVQENIQQK ERFCALEEKCENIQKPLSSVQENIQQKSKD IQKPLSSVQENIQQKSKDIVNKMTFHSQKF K P L Q K S 0 0 1 0 0 3 1 0 0 1 1 1 0 0 1 2 0 0 0 1 0 0 12 0 1369.7201 P52732;B2RAM6;Q59GZ5 P52732 746 757 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 2 1.4249E-21 154.24 1 2 0.50041 0.63455 NaN 1 Median 0.50041 0.63455 NaN 1 0 Median NaN NaN NaN 0 0 Median 12071000 4051100 8019900 5947500 4051100 1896400 6123500 0 6123500 9356 1366 9614 33746;33747;33748 50837;50838;50839 50837 3 PLTSFGSAPSSEGAK PISPPQPPSVSAWNKPLTSFGSAPSSEGAK PLTSFGSAPSSEGAKNGQESGLEIGTDTIQ K P L A K N 2 0 0 0 0 0 1 2 0 0 1 1 0 1 2 4 1 0 0 0 0 0 15 0 1434.6991 E7EPN9;Q9Y520;H7C5N8 E7EPN9 2028 2042 PRRC2C Protein PRRC2C yes no 2 4.7501E-05 98.182 3 0.66561 0.8393 NaN 1 Median 0.66561 0.8393 NaN 1 0 Median NaN NaN NaN 0 0 Median 7572100 6362300 1209800 7572100 6362300 1209800 0 0 0 9357 1010 9615 33749;33750;33751 50840;50841;50842 50841 3 PLTVLNK RFSIAPSSLDPSNRKPLTVLNKGLENPLPE SLDPSNRKPLTVLNKGLENPLPERPREKEE K P L N K G 0 0 1 0 0 0 0 0 0 0 2 1 0 0 1 0 1 0 0 1 0 0 7 0 783.48544 B2R841;P53350;B4E083;Q59GD0;D3DWF3;I3L2H5 B2R841 339 345 PLK1 Serine/threonine-protein kinase PLK;Serine/threonine-protein kinase PLK1 yes no 2 0.0096162 82.913 2 0.66144 0.8519 NaN 1 Median 0.66144 0.8519 NaN 1 0 Median NaN NaN NaN 0 0 Median 6897400 5265400 1631900 6897400 5265400 1631900 0 0 0 9358 714 9616 33752;33753 50843;50844 50844 2 PLVETIFER DDSAPNEMVYRFTARPLVETIFERGMATCF YRFTARPLVETIFERGMATCFAYGQTGSGK R P L E R G 0 1 0 0 0 0 2 0 0 1 1 0 0 1 1 0 1 0 0 1 0 0 9 0 1102.6023 B0AZS5;O00139;B4DM85 B0AZS5 250 258 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A no no 2 0.0432 41.029 1 0.99675 1.3471 NaN 1 Median 0.99675 1.3471 NaN 1 0 Median NaN NaN NaN 0 0 Median 3512200 1708200 1804000 3512200 1708200 1804000 0 0 0 9359 664;1163 9617 33754 50845 50845 1 PLVLLK LKRFDDPGLMLMGFKPLVLLKKHHYLRPSL PGLMLMGFKPLVLLKKHHYLRPSLFVYPEE K P L L K K 0 0 0 0 0 0 0 0 0 0 3 1 0 0 1 0 0 0 0 1 0 0 6 0 681.4789 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356 A0A024R1N4 352 357 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.035215 89.775 2 0.56859 0.69858 5.6943 2 Median 0.56859 0.69858 5.6943 2 0 Median NaN NaN NaN 0 0 Median 62903000 40546000 22356000 62903000 40546000 22356000 0 0 0 9360 62 9618 33755;33756 50846;50847;50848 50846 3 PLVVQVPTFAR QEQLMGYRKRGPKPKPLVVQVPTFARRSNV PKPKPLVVQVPTFARRSNVLTGLQDSSTDN K P L A R R 1 1 0 0 0 1 0 0 0 0 1 0 0 1 2 0 1 0 0 3 0 0 11 0 1225.7183 A0A0S2Z4Q9;A0A0S2Z5B2;O00257 A0A0S2Z4Q9 78 88 CBX4 E3 SUMO-protein ligase CBX4 yes no 2 0.02277 51.528 1 0.90924 1.1748 NaN 1 Median 0.90924 1.1748 NaN 1 0 Median NaN NaN NaN 0 0 Median 555210 293510 261700 555210 293510 261700 0 0 0 9361 467 9619 33757 50849 50849 0 PLYENLRDILLQGLK AKYMETVKLLDYTEKPLYENLRDILLQGLK PLYENLRDILLQGLKAIGSKDDGKLDLSVV K P L L K A 0 1 1 1 0 1 1 1 0 1 5 1 0 0 1 0 0 0 1 0 0 0 15 1 1784.0196 A8K245;Q99986;H0YJ50;H0YJJ9 A8K245 315 329 VRK1 Serine/threonine-protein kinase VRK1 yes no 3 0.0015587 75.102 4 2 0.94743 1.2407 34.835 6 Median 1.0593 1.4207 19.005 4 0 Median 0.46234 0.78931 5.1383 2 0 Median 86546000 52061000 34485000 30456000 12121000 18335000 56090000 39940000 16150000 9362 582 9620 33758;33759;33760;33761;33762;33763 50850;50851;50852;50853;50854;50855;50856;50857;50858;50859 50858 10 PLYVALAQR TKAVTEMNGRIVGSKPLYVALAQRKEERKA RIVGSKPLYVALAQRKEERKAHLTNQYMQR K P L Q R K 2 1 0 0 0 1 0 0 0 0 2 0 0 0 1 0 0 0 1 1 0 0 9 0 1029.5971 A0A087WTT1;A0A024R9C1;P11940;A0A024R9E2;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;B3KT93;H0YAR2;Q2VIP3;Q5VX58;Q3ZCS4;Q9H361;Q4VXU2;H0YB86;B1ANR0;Q6IQ30;Q13310;H0Y5F5;Q15164;H0YEU6;Q147Y3;Q3B867;Q53GL4;Q59GZ7 B1ANR0 362 370 PABPC1;PABPC3;PABPC1L;PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 4 no no 2 1.2434E-05 128.48 1 0.23313 0.31132 NaN 1 Median 0.23313 0.31132 NaN 1 0 Median NaN NaN NaN 0 0 Median 23976000 19416000 4559000 23976000 19416000 4559000 0 0 0 9363 676;217 9621 33764 50860;50861 50860 2 PMCVESFSDYPPLGR LKSGDAAIVDMVPGKPMCVESFSDYPPLGR PMCVESFSDYPPLGRFAVRDMRQTVAVGVI K P M G R F 0 1 0 1 1 0 1 1 0 0 1 0 1 1 3 2 0 0 1 1 0 0 15 0 1753.7804 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;P68104;A8K9C4;Q5VTE0;Q96RE1;A0A087WVQ9;Q53GE9;Q53GA1;Q53G85;B4DV42;Q8IUB0;Q504Z0;Q53HR1;B4DNE0;Q9NZS6;Q53G89;Q6P4C9;B4E2C5;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q14222;Q96EB3;Q2F837 Q6IPT9 409 423 EEF1A1;EEF1A1P5;EEF1A1L14;EEF1A Elongation factor 1-alpha;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 2 5.4347E-09 155.48 8 0.37834 0.5324 9.0881 2 Median 0.37834 0.5324 9.0881 2 0 Median NaN NaN NaN 0 0 Median 19107000 17115000 1992000 19107000 17115000 1992000 0 0 0 9364 1421 9622;9623 33765;33766;33767;33768;33769;33770;33771;33772 50862;50863;50864;50865;50866;50867;50868;50869;50870;50871 50868 625 10 PMPSVMFGK P M G K 0 0 0 0 0 0 0 1 0 0 0 1 2 1 2 1 0 0 0 1 0 0 9 0 992.48234 REV__M0R162 yes no 2 0.024774 41.652 1 0.54479 0.75099 NaN 1 Median NaN NaN NaN 0 0 Median 0.54479 0.75099 NaN 1 0 Median 3664000 2136200 1527800 0 0 0 3664000 2136200 1527800 + 9365 1852 9624 33773 50872 50872 866;867 1 PNLGAIAEYK TNQIALLEARCHEMKPNLGAIAEYKKKEEL CHEMKPNLGAIAEYKKKEELYLQRVAELDK K P N Y K K 2 0 1 0 0 0 1 1 0 1 1 1 0 0 1 0 0 0 1 0 0 0 10 0 1074.571 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1088 1097 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.0323E-21 165.98 3 0.64857 0.8184 3.4031 2 Median 0.64857 0.8184 3.4031 2 0 Median NaN NaN NaN 0 0 Median 100200000 61111000 39094000 100200000 61111000 39094000 0 0 0 9366 1760 9625 33774;33775;33776 50873;50874;50875;50876;50877 50876 5 PNLLYQK IRSLSKETTRYNHPKPNLLYQKFVKMATLT TTRYNHPKPNLLYQKFVKMATLTSGGEKPN K P N Q K F 0 0 1 0 0 1 0 0 0 0 2 1 0 0 1 0 0 0 1 0 0 0 7 0 874.49125 Q5T3I0;A8KAG1;A0A0A0MRK1;E9PAV9;E9PPY4;F2Z3C6;B4DVU2 Q5T3I0 102 108 GPATCH4 G patch domain-containing protein 4 yes no 2 0.010147 119.22 4 2 0.86476 1.0826 7.0673 6 Median 0.90474 1.1285 5.1444 4 0 Median 0.67088 1.0007 2.7692 2 0 Median 115660000 61034000 54627000 98669000 50834000 47835000 16992000 10200000 6792000 9367 1568 9626 33777;33778;33779;33780;33781;33782 50878;50879;50880;50881;50882;50883;50884;50885 50882 8 PNPNQIISVGSK ADSKLKQVYIPTYTKPNPNQIISVGSKPGM YTKPNPNQIISVGSKPGMNGAGFQKGLTCE K P N S K P 0 0 2 0 0 1 0 1 0 2 0 1 0 0 2 2 0 0 0 1 0 0 12 0 1252.6776 A0A024R534;O94776 A0A024R534 342 353 MTA2 Metastasis-associated protein MTA2 yes no 2 0.0017899 84.198 2 0.65094 0.82246 19.735 2 Median 0.65094 0.82246 19.735 2 0 Median NaN NaN NaN 0 0 Median 20704000 12617000 8086700 20704000 12617000 8086700 0 0 0 9368 133 9627 33783;33784 50886;50887;50888 50888 3 PQEQLTLEPYER VFASEVKKMQQENMKPQEQLTLEPYERDHA NMKPQEQLTLEPYERDHAVVVGVYRPPPKV K P Q E R D 0 1 0 0 0 2 3 0 0 0 2 0 0 0 2 0 1 0 1 0 0 0 12 0 1501.7413 Q96BS4;P22087;M0R299;M0QXL5;A6NHQ2 Q96BS4 232 243 FBL;FBLL1 rRNA 2-O-methyltransferase fibrillarin;rRNA/tRNA 2-O-methyltransferase fibrillarin-like protein 1 no no 2 8.0387E-45 194.43 4 2 0.5764 0.77101 10.979 6 Median 0.60691 0.80646 8.5573 4 0 Median 0.48348 0.70074 7.7041 2 0 Median 71434000 43937000 27497000 55886000 35142000 20744000 15548000 8794900 6753200 9369 1288;566 9628 33785;33786;33787;33788;33789;33790 50889;50890;50891;50892;50893;50894;50895;50896;50897;50898;50899;50900;50901;50902 50894 14 PQIAEIIR YSRNIVKKFLMYGSKPQIAEIIRSFKGHVR FLMYGSKPQIAEIIRSFKGHVRKMLRHAEA K P Q I R S 1 1 0 0 0 1 1 0 0 3 0 0 0 0 1 0 0 0 0 0 0 0 8 0 938.55492 Q15397;B2RDG4 Q15397 229 236 KIAA0020 Pumilio domain-containing protein KIAA0020 yes no 2 0.033444 77.923 1 1 0.83288 1.1988 NaN 1 Median 0.83288 1.1988 NaN 1 0 Median NaN NaN NaN 0 0 Median 3660000 2365200 1294900 2624900 1330000 1294900 1035100 1035100 0 9370 1511 9629 33791;33792 50903;50904 50903 2 PQNEYIELHR ______________________________ ______________________________ M P Q H R K 0 1 1 0 0 1 2 0 1 1 1 0 0 0 1 0 0 0 1 0 0 0 10 0 1297.6415 Q5J7U2;O95478;A0A0A0MQZ6 Q5J7U2 2 11 CDK105;NSA2 Ribosome biogenesis protein NSA2 homolog yes no 3 0.00041627 76.143 4 0.88533 1.1766 71.435 4 Median 0.88533 1.1766 71.435 4 0 Median NaN NaN NaN 0 0 Median 44116000 26883000 17233000 44116000 26883000 17233000 0 0 0 9371 1221 9630 33793;33794;33795;33796 50905;50906;50907;50908 50907 4 PQTSGYTCNIPTESNLDSGEHKTSVLEESGPSR KNEDNIMTAQNVPLKPQTSGYTCNIPTESN GEHKTSVLEESGPSRLNNNYLMSGKNDVDD K P Q S R L 0 1 2 1 1 1 4 3 1 1 2 1 0 0 3 6 4 0 1 1 0 0 33 1 3576.6274 Q03188;H0Y8J2 Q03188 656 688 CENPC Centromere protein C yes no 4 0.047224 8.8378 1 0.85696 1.1152 NaN 1 Median 0.85696 1.1152 NaN 1 0 Median NaN NaN NaN 0 0 Median 12972000 6827200 6145200 12972000 6827200 6145200 0 0 0 9372 1439 9631 33797 50909 50909 1 PRHQEGEIFDTEK KHLTDAYFKKKKLRKPRHQEGEIFDTEKEK RKPRHQEGEIFDTEKEKYEITEQRKIDQKA K P R E K E 0 1 0 1 0 1 3 1 1 1 0 1 0 1 1 0 1 0 0 0 0 0 13 1 1584.7532 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3 Q8TBK5 225 237 RPL6 60S ribosomal protein L6 yes no 2;3 8.7147E-26 193.51 6 0.72589 0.94041 12.88 6 Median 0.72589 0.94041 12.88 6 0 Median NaN NaN NaN 0 0 Median 256120000 146490000 109630000 256120000 146490000 109630000 0 0 0 9373 277 9632 33798;33799;33800;33801;33802;33803 50910;50911;50912;50913;50914;50915;50916;50917;50918;50919 50912 10 PRPPPGPWDVPSPGLPVSAPILVR RAGSCRQRGARCSTKPRPPPGPWDVPSPGL VPSPGLPVSAPILVRRDAAPGASKLRAVLE K P R V R R 1 2 0 1 0 0 0 2 0 1 2 0 0 0 9 2 0 1 0 3 0 0 24 1 2500.3954 Q8N884 Q8N884 132 155 MB21D1 Cyclic GMP-AMP synthase yes yes 3 0.00043607 30.882 2 0.56784 0.80161 13.705 2 Median NaN NaN NaN 0 0 Median 0.56784 0.80161 13.705 2 0 Median 17123000 10343000 6779900 0 0 0 17123000 10343000 6779900 9374 1643 9633 33804;33805 50920;50921 50921 2 PSATGYLGSVAAK QVPRELSLTPITGAKPSATGYLGSVAAKRP AKPSATGYLGSVAAKRPLQEDRLLPAEVKA K P S A K R 3 0 0 0 0 0 0 2 0 0 1 1 0 0 1 2 1 0 1 1 0 0 13 0 1220.6401 B9EGQ5;M0QXA7;B3KR89;O95785 B9EGQ5 525 537 WIZ Protein Wiz yes no 2 0.022338 35.2 2 0.77276 1.0433 4.5516 2 Median NaN NaN NaN 0 0 Median 0.77276 1.0433 4.5516 2 0 Median 6804000 3583200 3220800 0 0 0 6804000 3583200 3220800 9375 929 9634 33806;33807 50922;50923 50922 2 PSDNLIVCGR LKDTEQYEREDFLIKPSDNLIVCGRAEQDQ DFLIKPSDNLIVCGRAEQDQCNLDVHVYNQ K P S G R A 0 1 1 1 1 0 0 1 0 1 1 0 0 0 1 1 0 0 0 1 0 0 10 0 1129.555 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DNL1;B4DJV5;Q86X79;Q05BL3;Q6PKI5;Q6PIN4;F8VZ56 Q9BV37 147 156 PWP1 Periodic tryptophan protein 1 homolog yes no 2 0.015767 96.034 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8996500 8996500 0 8996500 8996500 0 0 0 0 9376 273 9635 33808 50924 50924 1 PSEADPEADPEEATAAR PQPLALQLEQLLNPRPSEADPEADPEEATA EADPEADPEEATAARVIDRFDEGEDGEGDF R P S A R V 5 1 0 2 0 0 4 0 0 0 0 0 0 0 3 1 1 0 0 0 0 0 17 0 1754.7595 Q9NY61;A0A087WW41 Q9NY61 19 35 AATF Protein AATF yes no 2 0.00047613 123.95 2 2 0.65493 0.92037 12.401 2 Median NaN NaN NaN 0 0 Median 0.65493 0.92037 12.401 2 0 Median 20420000 11320000 9100600 0 0 0 20420000 11320000 9100600 9377 1767 9636 33809;33810;33811;33812 50925;50926;50927;50928;50929;50930 50926 6 PSESVSGANSSAVLPSVK PSTSEVNNVNPKKPKPSESVSGANSSAVLP SVSGANSSAVLPSVKSPSVTSSQAMLAKGT K P S V K S 2 0 1 0 0 0 1 1 0 0 1 1 0 0 2 6 0 0 0 3 0 0 18 0 1714.8737 A8K124;B4DHL1;A0A024R5W1;Q6N043;H0YLA6;H0YL38;Q9H740 A8K124 180 197 SUHW4;ZNF280D Zinc finger protein 280D yes no 2 0.0077918 41.242 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1228200 0 1228200 1228200 0 1228200 0 0 0 9378 151 9637 33813 50931 50931 1 PSGSLIASTQDKPNQQDIVFFEK TSEPVAGLGPALAWKPSGSLIASTQDKPNQ TQDKPNQQDIVFFEKNGLLHGHFTLPFLKD K P S E K N 1 0 1 2 0 3 1 1 0 2 1 2 0 2 2 3 1 0 0 1 0 0 23 1 2548.2809 Q4LE38;O95163;B4E3I9 Q4LE38 258 280 IKBKAP variant protein;IKBKAP Elongator complex protein 1 yes no 3 9.1894E-09 114.56 2 0.45513 0.54479 NaN 1 Median 0.45513 0.54479 NaN 1 0 Median NaN NaN NaN 0 0 Median 4204600 3271200 933430 4204600 3271200 933430 0 0 0 9379 1213 9638 33814;33815 50932;50933 50933 2 PSGVSAALALK KPVPGFQVAYVVFQKPSGVSAALALKGPLL VFQKPSGVSAALALKGPLLVSTESHPVKSG K P S L K G 3 0 0 0 0 0 0 1 0 0 2 1 0 0 1 2 0 0 0 1 0 0 11 0 1012.5917 Q9Y3A4 Q9Y3A4 126 136 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 2 8.3351E-06 131.52 3 0.9959 1.2482 6.8173 3 Median 0.9959 1.2482 6.8173 3 0 Median NaN NaN NaN 0 0 Median 55025000 30302000 24723000 55025000 30302000 24723000 0 0 0 9380 1815 9639 33816;33817;33818 50934;50935;50936;50937 50936 4 PSHLVDAHTAEVNCLSFNPYSEFILATGSADK QKLMIWDTRSNTTSKPSHLVDAHTAEVNCL NPYSEFILATGSADKTVALWDLRNLKLKLH K P S D K T 4 0 2 2 1 0 2 1 2 1 3 1 0 2 2 4 2 0 1 2 0 0 32 0 3489.6511 Q6FHQ0;Q16576;E9PC52;A8K6A2;Q5JP01;Q5JP02 Q6FHQ0 264 295 RBBP7 Histone-binding protein RBBP7 yes no 3;4 2.8644E-09 78.757 4 1 0.76011 1.0225 41.449 5 Median 0.78407 0.99678 47.754 4 0 Median 0.72609 1.1311 NaN 1 0 Median 195420000 107990000 87429000 162130000 90115000 72010000 33293000 17874000 15419000 9381 1521 9640 33819;33820;33821;33822;33823 50938;50939;50940;50941;50942;50943 50939 6 PSHSVDAHTAEVNCLSFNPYSEFILATGSADK QKLMIWDTRSNNTSKPSHSVDAHTAEVNCL NPYSEFILATGSADKTVALWDLRNLKLKLH K P S D K T 4 0 2 2 1 0 2 1 2 1 2 1 0 2 2 5 2 0 1 2 0 0 32 0 3463.599 Q09028;H0YF10;B4DRT0;H0YCT5;H0YDK2;H0YEU5 Q09028 265 296 RBBP4 Histone-binding protein RBBP4 yes no 4 3.7924E-09 76.106 3 0.75768 0.96546 16.71 3 Median 0.75768 0.96546 16.71 3 0 Median NaN NaN NaN 0 0 Median 100480000 55588000 44894000 100480000 55588000 44894000 0 0 0 9382 1452 9641 33824;33825;33826 50944;50945;50946;50947;50948 50945 5 PSIIFFDEIDGLAPVR ERQLRLLFDQAYQMRPSIIFFDEIDGLAPV SIIFFDEIDGLAPVRSSRQDQIHSSIVSTL R P S V R S 1 1 0 2 0 0 1 1 0 3 1 0 0 2 2 1 0 0 0 1 0 0 16 0 1787.9458 A0A024R9G7;Q6PL18 A0A024R9G7 525 540 ATAD2 ATPase family AAA domain-containing protein 2 no no 2 2.4311E-18 117.79 1 0.80716 1.0998 NaN 1 Median 0.80716 1.0998 NaN 1 0 Median NaN NaN NaN 0 0 Median 3112600 1603900 1508700 3112600 1603900 1508700 0 0 0 9383 221 9642 33827 50949 50949 1 PSLLLRPR FGSVCFSYTNGCHLKPSLLLRPRGKDERLV TNGCHLKPSLLLRPRGKDERLVTVRLHPCP K P S P R G 0 2 0 0 0 0 0 0 0 0 3 0 0 0 2 1 0 0 0 0 0 0 8 1 950.60253 Q9H6R4;A0A0A0MRW6;B4DF80 Q9H6R4 235 242 NOL6 Nucleolar protein 6 yes no 3 0.0053521 63.48 1 0.84538 1.134 NaN 1 Median 0.84538 1.134 NaN 1 0 Median NaN NaN NaN 0 0 Median 30356000 15428000 14927000 30356000 15428000 14927000 0 0 0 9384 1738 9643 33828 50950 50950 1 PSLSGVAPLPR GDLWTLDIDTLTWNKPSLSGVAPLPRSLHS TWNKPSLSGVAPLPRSLHSATTIGNKMYVF K P S P R S 1 1 0 0 0 0 0 1 0 0 2 0 0 0 3 2 0 0 0 1 0 0 11 0 1092.6291 A6NEM2;P51610;Q05C05 A6NEM2 245 255 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 0.015453 93.598 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 868280 868280 0 868280 868280 0 0 0 0 9385 564 9644 33829 50951 50951 1 PSLSLGTITDEEMK VCPPHLKTCYPLESRPSLSLGTITDEEMKT RPSLSLGTITDEEMKTGDPQETLRRASMQP R P S M K T 0 0 0 1 0 0 2 1 0 1 2 1 1 0 1 2 2 0 0 0 0 0 14 0 1519.744 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q9UNL7;Q4LE64;Q14980 Q4LE64 1930 1943 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 1.2816E-13 151.26 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14930000 14930000 0 0 0 0 14930000 14930000 0 9386 148;1499 9645 33830;33831 50952;50953 50952 75 2 PSNILVNSR AYLREKHQIMHRDVKPSNILVNSRGEIKLC MHRDVKPSNILVNSRGEIKLCDFGVSGQLI K P S S R G 0 1 2 0 0 0 0 0 0 1 1 0 0 0 1 2 0 0 0 1 0 0 9 0 998.55089 B4DFY5;A4QPA9;Q02750;B3KS97;H3BRW9;P36507;A0A1B0GUL7;Q7Z370;G5E9C7 P36507 197 205 MAP2K1;MAP2K2;DKFZp686L02273 Dual specificity mitogen-activated protein kinase kinase 1;Dual specificity mitogen-activated protein kinase kinase 2 no no 2 0.00059452 86.136 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5649200 5649200 0 5649200 5649200 0 0 0 0 9387 1324;558 9646 33832 50954 50954 1 PSQAPAVEVAPAGASYNPSFEDHQTLLSAAHEVELQR TKKKGVKRPARLHTKPSQAPAVEVAPAGAS HQTLLSAAHEVELQRQKEAEKLERQLALPA K P S Q R Q 7 1 1 1 0 3 4 1 2 0 3 0 0 1 4 4 1 0 1 3 0 0 37 0 3915.9028 Q7L4X7;Q96CS0;Q53YP0;B4E1N4;Q9NZM5;B4DND9;B4E013;M0QX73 Q7L4X7 228 264 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes no 4 2.1742E-12 75.261 3 0.98435 1.3629 35.135 2 Median 0.98435 1.3629 35.135 2 0 Median NaN NaN NaN 0 0 Median 20903000 6128100 14775000 20903000 6128100 14775000 0 0 0 9388 887 9647 33833;33834;33835 50955;50956;50957;50958 50956 4 PSQCSEFIQQSSMK KISRLLDLVVQPVPRPSQCSEFIQQSSMKS RPSQCSEFIQQSSMKSPLYLVSRSLPSSSQ R P S M K S 0 0 0 0 1 3 1 0 0 1 0 1 1 1 1 4 0 0 0 0 0 0 14 0 1655.7283 Q8WYP5;B3KVE5 Q8WYP5 1128 1141 AHCTF1 Protein ELYS yes no 2 0.0029514 41.684 1 0.3291 0.44625 NaN 1 Median NaN NaN NaN 0 0 Median 0.3291 0.44625 NaN 1 0 Median 3347600 2721300 626320 0 0 0 3347600 2721300 626320 9389 1670 9648 33836 50959 50959 747 1 PSQVNGAPGSPTEPAGQK STPAKSPKLQKKNQKPSQVNGAPGSPTEPA VNGAPGSPTEPAGQKQHQKALPKKGVLGKS K P S Q K Q 2 0 1 0 0 2 1 3 0 0 0 1 0 0 4 2 1 0 0 1 0 0 18 0 1720.838 Q9BQG0;I3L1L3;B4DZZ1;B4DE42 Q9BQG0 1258 1275 MYBBP1A Myb-binding protein 1A yes no 2 0.025656 68.972 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 379450 379450 0 379450 379450 0 0 0 0 9390 1708 9649 33837 50960 50960 1 PSSFQNNVQSQDPQVSTK EEDYSGLTEDMLLPRPSSFQNNVQSQDPQV FQNNVQSQDPQVSTKTGEPLMSESTSNIDQ R P S T K T 0 0 2 1 0 4 0 0 0 0 0 1 0 1 2 4 1 0 0 2 0 0 18 0 1989.9392 D3DS96;Q9NRL2;Q59G54 D3DS96 840 857 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 1.7827E-11 141.34 3 2 0.62557 0.92683 28.738 4 Median 0.56118 0.71146 41.408 2 0 Median 0.62557 0.9335 5.0224 2 0 Median 23493000 14963000 8529900 7369300 4861000 2508300 16124000 10102000 6021600 9391 979 9650 33838;33839;33840;33841;33842 50961;50962;50963;50964;50965;50966 50961 6 PSSSPVIFAGGQDR SQSPPKGVTIPYRPKPSSSPVIFAGGQDRY KPSSSPVIFAGGQDRYSTGSDSASFPHTTP K P S D R Y 1 1 0 1 0 1 0 2 0 1 0 0 0 1 2 3 0 0 0 1 0 0 14 0 1416.6997 Q15366;B4DLC0;H3BSS4 Q15366 186 199 PCBP2 Poly(rC)-binding protein 2 yes no 2 5.7543E-36 199.8 4 2 0.3052 0.41107 140.12 6 Median 0.28892 0.38863 5.5741 4 0 Median 3.9813 5.9232 1.3375 2 0 Median 107030000 65204000 41824000 76978000 58263000 18715000 30050000 6941400 23109000 9392 1510 9651 33843;33844;33845;33846;33847;33848 50967;50968;50969;50970;50971;50972;50973;50974 50970 8 PSSSPVIFAGGQLTK SQSPPKGVTIPYRPKPSSSPVIFAGGQLTK PSSSPVIFAGGQLTKLHQLAMQQSHFPMTH K P S T K L 1 0 0 0 0 1 0 2 0 1 1 1 0 1 2 3 1 0 0 1 0 0 15 0 1487.7984 H3BRU6;F8VZX2;B4DRD7 H3BRU6 167 181 PCBP2 yes no 2 0.00059697 95.183 1 0.2561 0.33531 NaN 1 Median 0.2561 0.33531 NaN 1 0 Median NaN NaN NaN 0 0 Median 2323000 1881300 441660 2323000 1881300 441660 0 0 0 9393 1064 9652 33849 50975 50975 1 PSVEGQQPAAAAACEPVDHAQSESILK QSQRGSSPQNTTTPKPSVEGQQPAAAAACE ACEPVDHAQSESILKVSQPRALEQQASTPP K P S L K V 6 0 0 1 1 3 3 1 1 1 1 1 0 0 3 3 0 0 0 2 0 0 27 0 2789.329 Q27J81 Q27J81 381 407 INF2 Inverted formin-2 yes yes 3 0.00052187 65.023 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 607630 607630 0 607630 607630 0 0 0 0 9394 1526 9653 33850 50976 50976 1 PSVYLGLFDINR VSVFTWQVNIYGQGKPSVYLGLFDINRWYH QGKPSVYLGLFDINRWYHAQMPDSLRSGEY K P S N R W 0 1 1 1 0 0 0 1 0 1 2 0 0 1 1 1 0 0 1 1 0 0 12 0 1392.7402 Q8WYP5;Q96M44 Q8WYP5 395 406 AHCTF1 Protein ELYS yes no 2 2.018E-16 185.08 3 2 0.71781 0.95637 9.9146 4 Median 0.74354 0.99409 5.4322 3 0 Median 0.52967 0.81878 NaN 1 0 Median 83771000 50872000 32900000 57175000 31496000 25679000 26596000 19375000 7221000 9395 1670 9654 33851;33852;33853;33854;33855 50977;50978;50979;50980;50981;50982 50978 6 PVAIQTYPILGEK ______________________________ YKPVAIQTYPILGEKITQDTLYWNNYKTPV K P V E K I 1 0 0 0 0 1 1 1 0 2 1 1 0 0 2 0 1 0 1 1 0 0 13 0 1427.8024 Q8TED0;D6RF65 Q8TED0 6 18 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 4.4736E-08 126.19 3 2 0.83741 1.0678 46.481 5 Median 0.84578 1.0678 62 3 0 Median 0.77953 1.0792 9.7932 2 0 Median 26098000 13271000 12827000 17183000 8131800 9050700 8915300 5139400 3775900 9396 1660 9655 33856;33857;33858;33859;33860 50983;50984;50985;50986;50987;50988 50986 4 PVGSLAGIGEVLGK SQKHRDFVAEPMGEKPVGSLAGIGEVLGKK KPVGSLAGIGEVLGKKLEERGFDKAYVVLG K P V G K K 1 0 0 0 0 0 1 4 0 1 2 1 0 0 1 1 0 0 0 2 0 0 14 0 1295.7449 A0A024R5H0;O75531;B2R4V4 A0A024R5H0 19 32 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes no 2 6.0212E-66 211.37 10 2 0.90482 1.1952 30.596 8 Median 0.94467 1.2698 36.099 6 0 Median 0.70258 1.1046 4.4969 2 0 Median 7974200000 3984400000 3989800000 6616600000 3192000000 3424600000 1357600000 792440000 565130000 9397 143 9656 33861;33862;33863;33864;33865;33866;33867;33868;33869;33870;33871;33872 50989;50990;50991;50992;50993;50994;50995;50996;50997;50998;50999;51000;51001;51002;51003;51004;51005;51006;51007;51008;51009;51010;51011;51012;51013;51014;51015;51016;51017;51018;51019;51020;51021 51007 33 PVHHGVNQLK GGRKRPVPKGATYGKPVHHGVNQLKFARSL ATYGKPVHHGVNQLKFARSLQSVAEERAGR K P V L K F 0 0 1 0 0 1 0 1 2 0 1 1 0 0 1 0 0 0 0 2 0 0 10 0 1127.62 A0A024R2Q4;P61313;E7EQV9;B4DLP4;E7ENU7;E7EX53;B4DEN1;A4D1Q5 A0A024R2Q4 84 93 RPL15;LOC136321 Ribosomal protein L15;60S ribosomal protein L15 yes no 2;3 1.7875E-11 173.68 6 2 0.67163 0.92849 40.138 7 Median 0.72886 0.92849 47.764 5 0 Median 0.59282 0.92872 7.126 2 0 Median 517020000 286370000 230650000 451430000 245420000 206010000 65590000 40944000 24646000 9398 92 9657 33873;33874;33875;33876;33877;33878;33879;33880 51022;51023;51024;51025;51026;51027;51028;51029;51030;51031;51032;51033;51034;51035 51034 14 PVHLTAFLGYK HRGKVKSFPKDDPSKPVHLTAFLGYKAGMT DPSKPVHLTAFLGYKAGMTHIVREVDRPGS K P V Y K A 1 0 0 0 0 0 0 1 1 0 2 1 0 1 1 0 1 0 1 1 0 0 11 0 1244.6917 P39023;Q8TBW1;Q96QL0;B3KS36;H7C422;H7C3M2;B4DN06;F8WCR1 P39023 40 50 RPL3 60S ribosomal protein L3 yes no 3 5.7613E-05 83.862 5 1 0.73309 0.9414 8.412 5 Median 0.7496 0.94068 9.4541 4 0 Median 0.65668 1.0179 NaN 1 0 Median 287220000 155830000 131390000 262820000 140430000 122390000 24402000 15400000 9001900 9399 1330 9658 33881;33882;33883;33884;33885;33886 51036;51037;51038;51039;51040;51041;51042;51043;51044;51045;51046 51041 11 PVIACSVTIK VRSKQALGRACGVSRPVIACSVTIKEGSQL CGVSRPVIACSVTIKEGSQLKQQIQSIQQS R P V I K E 1 0 0 0 1 0 0 0 0 2 0 1 0 0 1 1 1 0 0 2 0 0 10 0 1086.6107 Q6FHM6;B1AHD1;P55769 Q6FHM6 98 107 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes no 2 0.000399 123.72 3 0.74468 0.95886 7.43 2 Median 0.74468 0.95886 7.43 2 0 Median NaN NaN NaN 0 0 Median 12077000 8983600 3093900 12077000 8983600 3093900 0 0 0 9400 670 9659 33887;33888;33889 51047;51048;51049 51047 3 PVINSTPGR NGAEGLTPRSGTTPKPVINSTPGRTPLRDK SGTTPKPVINSTPGRTPLRDKLNINPEDGM K P V G R T 0 1 1 0 0 0 0 1 0 1 0 0 0 0 2 1 1 0 0 1 0 0 9 0 939.51378 B4DSH1;B3KY60;Q99459 B4DSH1 406 414 CDC5L Cell division cycle 5-like protein yes no 2 0.032089 43.808 1 0.71016 0.95485 NaN 1 Median 0.71016 0.95485 NaN 1 0 Median NaN NaN NaN 0 0 Median 1388700 872760 515930 1388700 872760 515930 0 0 0 9401 792 9660 33890 51050 51050 1 PVIVEPLEQLDDEDGLPEK ERCSEGVFLLTTTPRPVIVEPLEQLDDEDG EPLEQLDDEDGLPEKLAQKNPMYQKERETP R P V E K L 0 0 0 3 0 1 4 1 0 1 3 1 0 0 3 0 0 0 0 2 0 0 19 0 2134.0681 Q9BSV4;Q86VG2;P23246;Q6PIX2 Q9BSV4 371 389 SFPQ Splicing factor, proline- and glutamine-rich yes no 2 0.042232 61.641 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 514160 514160 0 514160 514160 0 0 0 0 9402 1292 9661 33891 51051 51051 1 PVLTQESATYIAEEYSR AAFMKKYIHVAKIIKPVLTQESATYIAEEY LTQESATYIAEEYSRLRSQDSMSSDTARTS K P V S R L 2 1 0 0 0 1 3 0 0 1 1 0 0 0 1 2 2 0 2 1 0 0 17 0 1955.9476 Q8NHX6;Q53HJ4;B2R7C5;A0A0S2Z4T1;A0A0S2Z492;P25205;B4DUQ9;J3KQ69;B4DS46;Q7Z6P5 Q8NHX6 580 596 HCC5;MCM3 DNA helicase;DNA replication licensing factor MCM3 yes no 2 2.1464E-16 162.37 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4875500 4875500 0 4875500 4875500 0 0 0 0 9403 463 9662 33892;33893 51052;51053;51054 51052 3 PVNAIIEHVR TIENPRHFVDSHHQKPVNAIIEHVRDGSVV SHHQKPVNAIIEHVRDGSVVRALLLPDYYL K P V V R D 1 1 1 0 0 0 1 0 1 2 0 0 0 0 1 0 0 0 0 2 0 0 10 0 1146.6509 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B4E299;B3KU67;I6TRR8 A0A140VK49 194 203 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 3 0.00058058 72.096 1 0.38373 0.51701 NaN 1 Median 0.38373 0.51701 NaN 1 0 Median NaN NaN NaN 0 0 Median 13702000 9918600 3783900 13702000 9918600 3783900 0 0 0 9404 508 9663 33894 51055 51055 1 PVPGFQVAYVVFQK AESPKESRSKFFHPKPVPGFQVAYVVFQKP KPVPGFQVAYVVFQKPSGVSAALALKGPLL K P V Q K P 1 0 0 0 0 2 0 1 0 0 0 1 0 2 2 0 0 0 1 4 0 0 14 0 1577.8606 Q9Y3A4 Q9Y3A4 112 125 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 2 4.6656E-14 155.84 4 1.0002 1.2578 3.4751 4 Median 1.0002 1.2578 3.4751 4 0 Median NaN NaN NaN 0 0 Median 64680000 30943000 33738000 64680000 30943000 33738000 0 0 0 9405 1815 9664 33895;33896;33897;33898 51056;51057;51058;51059;51060;51061 51056 6 PVPQVDEAETR QEDDFGVAWVEAFAKPVPQVDEAETRVVKD AFAKPVPQVDEAETRVVKDLAKVSVKEKLK K P V T R V 1 1 0 1 0 1 2 0 0 0 0 0 0 0 2 0 1 0 0 2 0 0 11 0 1239.6095 Q9NQZ2 Q9NQZ2 192 202 UTP3 Something about silencing protein 10 yes yes 2 0.0011461 86.898 2 2 0.77667 1.1168 11.204 4 Median 0.91466 1.2553 13.12 2 0 Median 0.71936 1.088 0.27173 2 0 Median 51912000 28474000 23438000 18201000 8719800 9481200 33711000 19754000 13957000 9406 1755 9665 33899;33900;33901;33902 51062;51063;51064;51065;51066;51067 51065 6 PVQDLIK KKLTVNPGTKSKLPKPVQDLIKMIFDVESM GTKSKLPKPVQDLIKMIFDVESMKKAMVEY K P V I K M 0 0 0 1 0 1 0 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 7 0 811.48035 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 668 674 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.0032372 127.84 2 2 0.40932 1.3805 44.404 3 Plateau 1.0583 1.3809 NaN 1 0 Median 0.40409 0.63995 0.45894 2 0 Median 234070000 106970000 127100000 165490000 59402000 106090000 68576000 47566000 21010000 9407 107 9666 33903;33904;33905;33906 51068;51069;51070;51071 51068 4 PVQTSAVTGQASTGPVTQIIQTK LISNLGKVMSVVQTKPVQTSAVTGQASTGP GQASTGPVTQIIQTKGPLPAGTILKLVTSA K P V T K G 2 0 0 0 0 4 0 2 0 2 0 1 0 0 2 2 5 0 0 3 0 0 23 0 2311.2383 A6NEM2;P51610 A6NEM2 691 713 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 0.032665 55.755 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1017300 0 1017300 1017300 0 1017300 0 0 0 9408 564 9667 33907 51072 51072 1 PVSFLPQNK DSGGTSAKESECITKPVSFLPQNKEEIERT SECITKPVSFLPQNKEEIERTIKNIQGTIT K P V N K E 0 0 1 0 0 1 0 0 0 0 1 1 0 1 2 1 0 0 0 1 0 0 9 0 1028.5655 O75691 O75691 1761 1769 UTP20 Small subunit processome component 20 homolog yes yes 2 0.026559 75.213 1 1.6853 2.1361 NaN 1 Median 1.6853 2.1361 NaN 1 0 Median NaN NaN NaN 0 0 Median 2724500 770580 1953900 2724500 770580 1953900 0 0 0 9409 1207 9668 33908 51073 51073 1 PVSSAASVYAGAGGSGSR YRSLGSVQAPSYGARPVSSAASVYAGAGGS SAASVYAGAGGSGSRISVSRSTSFRGGMGS R P V S R I 4 1 0 0 0 0 0 4 0 0 0 0 0 0 1 5 0 0 1 2 0 0 18 0 1579.759 F8VZY9;B2RA03;A0A024RAY2;P05783 F8VZY9 28 45 KRT18 Keratin, type I cytoskeletal 18 yes no 2 2.4608E-205 328.43 4 2 0.23808 0.32886 103.24 6 Median 0.22668 0.31186 10.363 4 0 Median 1.4249 2.2459 0.13036 2 0 Median 443550000 334010000 109540000 377990000 307890000 70096000 65562000 26117000 39445000 9410 252 9669 33909;33910;33911;33912;33913;33914 51074;51075;51076;51077;51078;51079;51080;51081;51082;51083;51084;51085;51086;51087 51074 14 PVVSFIAGLTAPPGR AAEFLKQHNSGPNSKPVVSFIAGLTAPPGR PVVSFIAGLTAPPGRRMGHAGAIIAGGKGG K P V G R R 2 1 0 0 0 0 0 2 0 1 1 0 0 1 3 1 1 0 0 2 0 0 15 0 1480.8402 Q6IAL5;B2R8A1;A8K4W7;P53597 Q6IAL5 268 282 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes no 2 4.7242E-05 78.653 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2358600 2358600 0 2358600 2358600 0 0 0 0 9411 610 9670 33915 51088 51088 1 PVYHAITK FNISHTQTRLLSMAKPVYHAITKHSPKKPV RLLSMAKPVYHAITKHSPKKPVIVFVPSRK K P V T K H 1 0 0 0 0 0 0 0 1 1 0 1 0 0 1 0 1 0 1 1 0 0 8 0 927.5178 O75643;A4FU77;B4E150;B4E0P5;Q9UNV9;A2RRQ7 O75643 1545 1552 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 0.03528 22.386 1 0.7278 0.91865 NaN 1 Median 0.7278 0.91865 NaN 1 0 Median NaN NaN NaN 0 0 Median 10406000 5127600 5278700 10406000 5127600 5278700 0 0 0 9412 1206 9671 33916 51089 51089 1 PWISLPR ATRLSNIFVIGKGNKPWISLPRGKGIRLTI FVIGKGNKPWISLPRGKGIRLTIAEERDKR K P W P R G 0 1 0 0 0 0 0 0 0 1 1 0 0 0 2 1 0 1 0 0 0 0 7 0 867.49667 B2R491;P62701;Q96IR1;Q53HV1;Q8TD47;C9JEH7;A4FU11;Q496E4;P22090;Q53HI6 B2R491 234 240 RPS4X;RPS4Y2;RPS4Y1 40S ribosomal protein S4;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1 yes no 2 0.022472 69.383 3 2 0.46875 0.65791 9.7578 2 Median NaN NaN NaN 0 0 Median 0.46875 0.65791 9.7578 2 0 Median 20098000 11946000 8152100 0 0 0 20098000 11946000 8152100 9413 681 9672 33917;33918;33919;33920;33921 51090;51091;51092;51093;51094;51095 51091 6 PYHLSTSSVFR ILPRVHRKLAIERAKPYHLSTSSVFRLVSR ERAKPYHLSTSSVFRLVSRPKPLSAVPKQV K P Y F R L 0 1 0 0 0 0 0 0 1 0 1 0 0 1 1 3 1 0 1 1 0 0 11 0 1292.6513 Q8WYP5 Q8WYP5 1018 1028 AHCTF1 Protein ELYS yes yes 3 0.0065326 56.936 2 0.74587 1.0058 0.53338 2 Median 0.74587 1.0058 0.53338 2 0 Median NaN NaN NaN 0 0 Median 34894000 20365000 14530000 34894000 20365000 14530000 0 0 0 9414 1670 9673 33922;33923 51096;51097 51096 2 PYLEGSGCIAGVTVPSTR GRTGGQALSTLECVKPYLEGSGCIAGVTVP EGSGCIAGVTVPSTREVMSLHEASRKELIP K P Y T R E 1 1 0 0 1 0 1 3 0 1 1 0 0 0 2 2 2 0 1 2 0 0 18 0 1862.9196 A0A087X1U6;A0A075B730 A0A087X1U6 1891 1908 EPPK1 yes no 2 3.7905E-16 150.22 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9415 373 9674 33924 51098 51098 1 PYQCQYCEYR PSELKKHMRIHTGEKPYQCQYCEYRSADSS HTGEKPYQCQYCEYRSADSSNLKTHVKTKH K P Y Y R S 0 1 0 0 2 2 1 0 0 0 0 0 0 0 1 0 0 0 3 0 0 0 10 0 1465.5755 A0A024RC04;B7ZKJ5;P17010;Q8WWU0;Q8WXB7;E9PEP7;P08048 A0A024RC04 575 584 ZFX;ZFY Zinc finger X-chromosomal protein;Zinc finger Y-chromosomal protein yes no 2 0.014363 55.461 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9416 286 9675 33925 51099 51099 1 PYSCNFCEK SSYLAQHIRIHSGAKPYSCNFCEKSFRQLS IHSGAKPYSCNFCEKSFRQLSHLQQHTRIH K P Y E K S 0 0 1 0 2 0 1 0 0 0 0 1 0 1 1 1 0 0 1 0 0 0 9 0 1203.4689 D3DUR9;Q8TF68;B4DQU6;F5H8L7;E9PHB3 D3DUR9 283 291 ZNF384 Zinc finger protein 384 yes no 2 0.011038 58.815 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9417 983 9676 33926 51100 51100 1 QAANFTAGGQPR GTETGILKGVNLQRKQAANFTAGGQPRREE QRKQAANFTAGGQPRREEAVSALCWGTGGE K Q A P R R 3 1 1 0 0 2 0 2 0 0 0 0 0 1 1 0 1 0 0 0 0 0 12 0 1216.5949 Q6RFH5;B4E018;F5GYL6 Q6RFH5 29 40 WDR74 WD repeat-containing protein 74 yes no 2 2.7818E-10 150.61 1 1 0.65134 0.89939 NaN 1 Median NaN NaN NaN 0 0 Median 0.65134 0.89939 NaN 1 0 Median 16448000 12708000 3739500 6594800 6594800 0 9853000 6113500 3739500 9418 1598 9677 33927;33928 51101;51102;51103 51101 3 QAASGLVGQENAR SHVKGLGLDESGLAKQAASGLVGQENAREA AKQAASGLVGQENAREACGVIVELIKSKKM K Q A A R E 3 1 1 0 0 2 1 2 0 0 1 0 0 0 0 1 0 0 0 1 0 0 13 0 1299.6531 B5BUB1;Q9Y265 B5BUB1 34 46 RUVBL1 RuvB-like 1 yes no 2 1.2725E-16 141.71 4 2 0.60598 0.8098 43.951 6 Median 0.55653 0.75024 21.102 4 0 Median 1.0484 1.5402 3.0761 2 0 Median 88913000 53255000 35658000 60572000 39042000 21531000 28341000 14214000 14127000 9419 896 9678 33929;33930;33931;33932;33933;33934 51104;51105;51106;51107;51108;51109;51110;51111;51112;51113;51114;51115 51111 12 QAASSLQQASLK ELLARKDSETGENIRQAASSLQQASLKLFE NIRQAASSLQQASLKLFEMAYKKMASEREG R Q A L K L 3 0 0 0 0 3 0 0 0 0 2 1 0 0 0 3 0 0 0 0 0 0 12 0 1230.6568 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z4T3;A1XP52 B7Z4V2 621 632 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 1.4884E-08 127.51 2 2 0.41766 0.51959 19.95 2 Median 0.41766 0.51959 19.95 2 0 Median NaN NaN NaN 0 0 Median 36306000 19337000 16970000 30381000 19337000 11044000 5925700 0 5925700 9420 910 9679 33935;33936;33937;33938 51116;51117;51118;51119 51118 4 QADLYISEGLHPR DGTTSNVLIIGELLKQADLYISEGLHPRII LKQADLYISEGLHPRIITEGFEAAKEKALQ K Q A P R I 1 1 0 1 0 1 1 1 1 1 2 0 0 0 1 1 0 0 1 0 0 0 13 0 1497.7576 Q59ET3;B2R9K8;A0A024RDL1;P40227;A1JUI8;B4DPJ8;Q92526 Q59ET3 103 115 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 yes no 3 0.036326 14.988 1 0.96348 1.3019 NaN 1 Median 0.96348 1.3019 NaN 1 0 Median NaN NaN NaN 0 0 Median 8031400 4636000 3395400 8031400 4636000 3395400 0 0 0 9421 319 9680 33939 51120 51120 1 QADSVEQAVYYCK STFKDKNKNDGLKPKQADSVEQAVYYCKKC PKQADSVEQAVYYCKKCTYRDPLYEIVRKH K Q A C K K 2 0 0 1 1 2 1 0 0 0 0 1 0 0 0 1 0 0 2 2 0 0 13 0 1559.6926 Q6DHZ8;B2RBM8;Q9H2P0;E9PQK8 Q6DHZ8 156 168 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.00076038 96.756 3 0.67186 0.85418 NaN 1 Median 0.67186 0.85418 NaN 1 0 Median NaN NaN NaN 0 0 Median 7914000 5220100 2693900 7914000 5220100 2693900 0 0 0 9422 729 9681 33940;33941;33942 51121;51122;51123 51123 3 QADVNLVNAK LSPAVIVGLLKEASKQADVNLVNAKLLVKE KEASKQADVNLVNAKLLVKEAGLNVTTSHS K Q A A K L 2 0 2 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 10 0 1070.572 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2;Q8N5M8;Q9UMY3 O43175 385 394 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 2 0.00050848 131.62 2 2 1.6338 2.2068 135.25 2 Median 0.67179 0.84803 NaN 1 0 Median 3.9736 5.7425 NaN 1 0 Median 19922000 6962000 12960000 10139000 5918500 4220800 9782700 1043600 8739100 9423 1182 9682 33943;33944;33945;33946 51124;51125;51126;51127 51124 4 QAELVPATVNDYR DDGLSERQSVFAILRQAELVPATVNDYREK LRQAELVPATVNDYREKLLHLRKLRHDVVQ R Q A Y R E 2 1 1 1 0 1 1 0 0 0 1 0 0 0 1 0 1 0 1 2 0 0 13 0 1474.7416 O75691 O75691 681 693 UTP20 Small subunit processome component 20 homolog yes yes 2 0.028889 45.908 1 1 1.2548 1.6035 NaN 1 Median NaN NaN NaN 0 0 Median 1.2548 1.6035 NaN 1 0 Median 4858600 1887100 2971500 0 0 0 4858600 1887100 2971500 9424 1207 9683 33947;33948 51128;51129 51129 2 QAEQLSAAGEGGDAGR FTQVTRKGGRRAKKRQAEQLSAAGEGGDAG AEQLSAAGEGGDAGRMDTEEARLAKRPVFP R Q A G R M 4 1 0 1 0 2 2 4 0 0 1 0 0 0 0 1 0 0 0 0 0 0 16 0 1515.6914 B2R823;Q9NRX1;F8WBJ6 B2R823 31 46 PNO1 RNA-binding protein PNO1 yes no 2 1.7615E-34 185.57 3 2 0.88244 0.83094 22.31 4 Linear 0.74959 1.0295 31.247 2 0 Median 0.62057 0.82138 2.5787 2 0 Median 22327000 13864000 8462500 12478000 7798800 4678800 9849100 6065500 3783700 9425 713 9684 33949;33950;33951;33952;33953 51130;51131;51132;51133;51134;51135;51136;51137;51138 51130 8 QAEQLVFPLEK AQVLSKWDPVVLKNRQAEQLVFPLEKEEPA LKNRQAEQLVFPLEKEEPAIAPIEHVLSGW R Q A E K E 1 0 0 0 0 2 2 0 0 0 2 1 0 1 1 0 0 0 0 1 0 0 11 0 1300.7027 Q9BVJ6;B4E343 Q9BVJ6 153 163 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 0.0064466 53.597 1 0.8743 1.2879 NaN 1 Median NaN NaN NaN 0 0 Median 0.8743 1.2879 NaN 1 0 Median 8534200 3885900 4648300 0 0 0 8534200 3885900 4648300 9426 1719 9685 33954 51139 51139 1 QAEVANQETKEDLPAENGETK DKKVQTKGKRGAKGKQAEVANQETKEDLPA QETKEDLPAENGETKTEESPASDEAGEKEA K Q A T K T 3 0 2 1 0 2 5 1 0 0 1 2 0 0 1 0 2 0 0 1 0 0 21 1 2300.0768 A6NL93;Q6NSG7;Q3B790;A6NEL0;P05114 A6NL93 52 72 HMGN1 Non-histone chromosomal protein HMG-14 yes no 3 1.3354E-47 157.73 4 2 0.77273 0.94665 18.338 6 Median 0.88563 1.0847 15.579 4 0 Median 0.50208 0.80193 1.3053 2 0 Median 160350000 89405000 70942000 122500000 64225000 58274000 37848000 25180000 12667000 9427 563 9686 33955;33956;33957;33958;33959;33960 51140;51141;51142;51143;51144;51145;51146;51147;51148;51149;51150;51151;51152 51149 13 QAEVANQETKEDLPAENGETKTEESPASDEAGEK DKKVQTKGKRGAKGKQAEVANQETKEDLPA TKTEESPASDEAGEKEAKSD__________ K Q A E K E 5 0 2 2 0 2 9 2 0 0 1 3 0 0 2 2 3 0 0 1 0 0 34 2 3630.6293 A6NL93;Q6NSG7;Q3B790;A6NEL0;P05114 A6NL93 52 85 HMGN1 Non-histone chromosomal protein HMG-14 yes no 4 6.8479E-35 127.92 3 2 0.79348 0.90035 13.593 5 Median 0.79591 0.93286 2.502 3 0 Median 0.4176 0.72413 1.3642 2 0 Median 176110000 94850000 81265000 133190000 63722000 69468000 42926000 31128000 11797000 9428 563 9687 33961;33962;33963;33964;33965 51153;51154;51155;51156;51157;51158;51159;51160;51161;51162;51163;51164;51165 51154 13 QAFAPFCAEDYTESLLQLHDAEIVR LVQYWDQCFYSQEQRQAFAPFCAEDYTESL YTESLLQLHDAEIVRLKNYYEVHKELFEGV R Q A V R L 4 1 0 2 1 2 3 0 1 1 3 0 0 2 1 1 1 0 1 1 0 0 25 0 2922.3858 A0A024RC67;O43663;H0YL53 A0A024RC67 316 340 PRC1 Protein regulator of cytokinesis 1 yes no 3 1.243E-07 91.565 4 0.6171 0.84505 11.8 3 Median 0.6171 0.84505 11.8 3 0 Median NaN NaN NaN 0 0 Median 24922000 15974000 8947200 24922000 15974000 8947200 0 0 0 9429 288 9688 33966;33967;33968;33969 51166;51167;51168;51169;51170;51171;51172 51167 7 QAFEQIK SDEFEAARKRAKKAKQAFEQIKKERFDRFN RKRAKKAKQAFEQIKKERFDRFNACFESVA K Q A I K K 1 0 0 0 0 2 1 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 7 0 862.45487 Q14683;G8JLG1;V9GY57 Q14683 1057 1063 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.049861 78.616 1 0.7743 0.97339 NaN 1 Median 0.7743 0.97339 NaN 1 0 Median NaN NaN NaN 0 0 Median 26277000 14383000 11894000 26277000 14383000 11894000 0 0 0 9430 1492 9689 33970 51173 51173 1 QAFYFALR PRLFDLVKVKDEKIRQAFYFALRDTLVADN VKDEKIRQAFYFALRDTLVADNLDQATRVA R Q A L R D 2 1 0 0 0 1 0 0 0 0 1 0 0 2 0 0 0 0 1 0 0 0 8 0 1014.5287 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 706 713 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.0053379 92.467 3 2 0.63538 0.96995 6.8268 5 Median 0.6959 0.94465 8.198 3 0 Median 0.62387 0.97986 1.4371 2 0 Median 148640000 84525000 64114000 87064000 48381000 38684000 61575000 36144000 25431000 9431 1760 9690 33971;33972;33973;33974;33975 51174;51175;51176;51177;51178;51179;51180;51181 51177 8 QAGAEALSQAVAR SLLIDDVIYHEAAVRQAGAEALSQAVARYQ VRQAGAEALSQAVARYQRQAAEVMGRLMEI R Q A A R Y 5 1 0 0 0 2 1 1 0 0 1 0 0 0 0 1 0 0 0 1 0 0 13 0 1270.663 E1NZA1;Q92616;A0A024RBS1 E1NZA1 1177 1189 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.00022425 126.03 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2203400 2203400 0 2203400 2203400 0 0 0 0 9432 1000 9691 33976;33977 51182;51183;51184 51184 3 QAGEVTFADAHRPK LSSRVSWQDLKDFMRQAGEVTFADAHRPKL RQAGEVTFADAHRPKLNEGVVEFASYGDLK R Q A P K L 3 1 0 1 0 1 1 1 1 0 0 1 0 1 1 0 1 0 0 1 0 0 14 1 1525.7637 A0A024R6D8;Q59EK7;Q13243;Q86U32 A0A024R6D8 130 143 SFRS5;SRSF5 Serine/arginine-rich splicing factor 5 yes no 3 0.0050808 101.38 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7731400 7731400 0 7731400 7731400 0 0 0 0 9433 160 9692 33978 51185 51185 1 QAGEVTYADAHK LSSRCSWQDLKDFMRQAGEVTYADAHKERT FMRQAGEVTYADAHKERTNEGVIEFRSYSD R Q A H K E 3 0 0 1 0 1 1 1 1 0 0 1 0 0 0 0 1 0 1 1 0 0 12 0 1288.6048 Q59GY3;V9HVZ0;A8K588;Q13247;A0A0D9SEM4;Q53F45;Q59EF5;A8K644;Q08170 Q59GY3 166 177 HEL-S-91;SRSF6;SRSF4;SFRS4 Serine/arginine-rich splicing factor 6;Serine/arginine-rich splicing factor 4 yes no 2;3 3.5627E-16 156.48 5 1 0.41627 0.54513 66.969 3 Median 0.39606 0.51101 9.1416 2 0 Median 1.0659 1.6212 NaN 1 0 Median 38650000 25885000 12766000 26943000 20061000 6881000 11708000 5823300 5884500 9434 615 9693 33979;33980;33981;33982;33983;33984 51186;51187;51188;51189;51190;51191;51192;51193 51193 8 QAGPAPAAATAASK PWLSATPSSGASAARQAGPAPAAATAASKK RQAGPAPAAATAASKKFPGSAALVGAVRKP R Q A S K K 7 0 0 0 0 1 0 1 0 0 0 1 0 0 2 1 1 0 0 0 0 0 14 0 1210.6306 Q9BTC0 Q9BTC0 613 626 DIDO1 Death-inducer obliterator 1 yes yes 2 0.00053367 59.155 1 0.84718 1.0578 NaN 1 Median 0.84718 1.0578 NaN 1 0 Median NaN NaN NaN 0 0 Median 4091500 2146100 1945300 4091500 2146100 1945300 0 0 0 9435 1713 9694 33985 51194 51194 1 QAIPIGLQNR VIDKCGYKEPTPIQRQAIPIGLQNRDIIGV TPIQRQAIPIGLQNRDIIGVAETGSGKTAA R Q A N R D 1 1 1 0 0 2 0 1 0 2 1 0 0 0 1 0 0 0 0 0 0 0 10 0 1108.6353 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56;H0YI52 B3KY11 400 409 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.0098405 54.157 1 1 0.7214 0.96852 33.204 2 Median 0.5433 0.76585 NaN 1 0 Median 0.95788 1.2248 NaN 1 0 Median 9139600 5648500 3491100 5409200 3645800 1763300 3730400 2002600 1727800 9436 45 9695 33986;33987 51195;51196 51195 2 QALEEAATADLDITEINK REMNWLDYFALGGNKQALEEAATADLDITE EEAATADLDITEINKLTAEAIQTPLKSAKT K Q A N K L 4 0 1 2 0 1 3 0 0 2 2 1 0 0 0 0 2 0 0 0 0 0 18 0 1943.9688 A8K7A2;Q53HL2;B4DXT3 A8K7A2 81 98 CDCA8 Borealin yes no 2 2.6029E-126 282.12 4 2 1.0461 1.3165 7.8564 6 Median 1.058 1.3436 2.1619 4 0 Median 0.74336 1.1768 9.4119 2 0 Median 171910000 90282000 81623000 91786000 43417000 48368000 80120000 46865000 33255000 9437 632 9696 33988;33989;33990;33991;33992;33993 51197;51198;51199;51200;51201;51202;51203;51204;51205;51206;51207;51208 51197 12 QALHSLELHYQAFLR WSLATFRTLKPEEQRQALHSLELHYQAFLR QALHSLELHYQAFLRDSQDAGGFGPEDRLM R Q A L R D 2 1 0 0 0 2 1 0 2 0 4 0 0 1 0 1 0 0 1 0 0 0 15 0 1824.9635 Q15149 Q15149 1061 1075 PLEC Plectin yes yes 4 1.7544E-05 102.52 3 1.0075 1.3526 32.772 3 Plateau 1.0075 1.3526 32.772 3 0 Plateau NaN NaN NaN 0 0 Median 22029000 10684000 11345000 22029000 10684000 11345000 0 0 0 9438 1507 9697 33994;33995;33996 51209;51210;51211;51212;51213;51214 51209 6 QALPCVAESPTVHVEVHQR ______________________________ CVAESPTVHVEVHQRGSSTAKKEDINLSVR K Q A Q R G 2 1 0 0 1 2 2 0 2 0 1 0 0 0 2 1 1 0 0 4 0 0 19 0 2156.0797 Q15645 Q15645 10 28 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 4 1.6073E-06 89.344 3 0.45343 0.60444 43.168 3 Plateau 0.45343 0.60444 43.168 3 0 Plateau NaN NaN NaN 0 0 Median 39288000 23767000 15521000 39288000 23767000 15521000 0 0 0 9439 1514 9698 33997;33998;33999 51215;51216;51217;51218 51217 4 QALQSLTELLMAQPR ILQDQCRDPAVSVRKQALQSLTELLMAQPR QALQSLTELLMAQPRCVQIQKAWLRGVVPV K Q A P R C 2 1 0 0 0 3 1 0 0 0 4 0 1 0 1 1 1 0 0 0 0 0 15 0 1697.9134 P42695;G3V1A9;E9PKK4 P42695 598 612 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.00033468 53.557 1 0.47472 0.70674 NaN 1 Median NaN NaN NaN 0 0 Median 0.47472 0.70674 NaN 1 0 Median 6708500 3955100 2753400 0 0 0 6708500 3955100 2753400 9440 1338 9699 34000 51219 51219 562 1 QALTTCDDILIK AERACCHSTGAGKLRQALTTCDDILIKQDQ KLRQALTTCDDILIKQDQTLAELQNNMVLV R Q A I K Q 1 0 0 2 1 1 0 0 0 2 2 1 0 0 0 0 2 0 0 0 0 0 12 0 1389.7174 O95235 O95235 773 784 KIF20A Kinesin-like protein KIF20A yes yes 2 1.8971E-11 153.1 5 0.74314 0.91759 14.243 3 Median 0.74314 0.91759 14.243 3 0 Median NaN NaN NaN 0 0 Median 66729000 31641000 35089000 66729000 31641000 35089000 0 0 0 9441 1215 9700 34001;34002;34003;34004;34005 51220;51221;51222;51223;51224;51225;51226 51220 7 QANPSVLERDVDTQEFNLEK NKKRKLTPDHNKNTKQANPSVLERDVDTQE VLERDVDTQEFNLEKARLEVHRFGITGYGK K Q A E K A 1 1 2 2 0 2 3 0 0 0 2 1 0 1 1 1 1 0 0 2 0 0 20 1 2331.1343 Q5TBH9;Q8NDD1 Q5TBH9 151 170 C1orf131 Uncharacterized protein C1orf131 yes no 3 0.0070976 37.112 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5882700 0 5882700 5882700 0 5882700 0 0 0 9442 1574 9701 34006 51227 51227 1 QAPDNEITIK KGKFNWKGTIKAILKQAPDNEITIKKLRKK KAILKQAPDNEITIKKLRKKVLAQYYTVTD K Q A I K K 1 0 1 1 0 1 1 0 0 2 0 1 0 0 1 0 1 0 0 0 0 0 10 0 1127.5823 Q9NX58;A8K3Y5 Q9NX58 321 330 LYAR Cell growth-regulating nucleolar protein yes no 2 0.0037267 102.06 2 0.95046 1.2176 5.3396 2 Median 0.95046 1.2176 5.3396 2 0 Median NaN NaN NaN 0 0 Median 19500000 9596300 9903400 19500000 9596300 9903400 0 0 0 9443 1766 9702 34007;34008 51228;51229;51230;51231 51229 4 QAPQPQSSLQR SVSKQETIMRHHTLRQAPQPQSSLQRGIPT HTLRQAPQPQSSLQRGIPTSARSMLSNFAQ R Q A Q R G 1 1 0 0 0 4 0 0 0 0 1 0 0 0 2 2 0 0 0 0 0 0 11 0 1238.6367 A0A0U1RRM1;Q8WXI9;B3KSZ4;A0A1B0GW07 A0A0U1RRM1 494 504 GATAD2B Transcriptional repressor p66-beta yes no 2 0.00021912 102.06 3 2 0.68979 0.91279 32.262 5 Median 0.65451 0.91152 12.234 3 0 Median 1.0596 1.4975 3.8692 2 0 Median 38694000 21193000 17501000 19624000 11972000 7651600 19070000 9221000 9849200 9444 488 9703 34009;34010;34011;34012;34013 51232;51233;51234;51235;51236;51237;51238;51239 51234 8 QAQAAVLAVLPR VDPEDDFQREMSFYRQAQAAVLAVLPRLHQ FYRQAQAAVLAVLPRLHQLKVPTKRPTDYF R Q A P R L 4 1 0 0 0 2 0 0 0 0 2 0 0 0 1 0 0 0 0 2 0 0 12 0 1235.735 Q6IB29;H7C2Q8;Q99848 Q6IB29 111 122 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 1.1742E-21 168.26 3 2 0.95059 1.3099 9.566 5 Median 0.96186 1.3179 2.6384 3 0 Median 0.70086 1.1356 6.4168 2 0 Median 396160000 210540000 185610000 274450000 138290000 136170000 121700000 72255000 49450000 9445 1123 9704 34014;34015;34016;34017;34018 51240;51241;51242;51243;51244;51245;51246;51247;51248;51249;51250 51246 11 QAQEYEALLNIK HLESELAQTRAEGQRQAQEYEALLNIKVKL GQRQAQEYEALLNIKVKLEAEIATYRRLLE R Q A I K V 2 0 1 0 0 2 2 0 0 1 2 1 0 0 0 0 0 0 1 0 0 0 12 0 1418.7405 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__P05784 F8VZY9 359 370 KRT18 Keratin, type I cytoskeletal 18 no no 2 9.5161E-110 256.91 4 2 0.2218 0.28839 98.675 6 Median 0.21232 0.27757 3.8852 4 0 Median 1.2537 1.8987 6.3046 2 0 Median 403890000 314550000 89341000 367460000 299410000 68047000 36429000 15136000 21293000 + 9446 252;954 9705 34019;34020;34021;34022;34023;34024 51251;51252;51253;51254;51255;51256;51257;51258;51259;51260;51261;51262;51263 51258 13 QAQIEVVPSASALIIK WKGLRITVKLTIQNRQAQIEVVPSASALII AQIEVVPSASALIIKALKEPPRDRKKQKNI R Q A I K A 3 0 0 0 0 2 1 0 0 3 1 1 0 0 1 2 0 0 0 2 0 0 16 0 1665.9665 P30050;Q59FI9;D3DS95 P30050 68 83 RPL12;hCG_21173 60S ribosomal protein L12 yes no 2 5.9551E-54 201.38 5 2 0.78153 1.0132 9.2576 5 Median 0.8097 1.0619 5.4614 3 0 Median 0.57985 0.91754 3.0357 2 0 Median 815020000 481020000 334000000 573060000 324400000 248660000 241970000 156620000 85344000 9447 1307 9706 34025;34026;34027;34028;34029;34030;34031 51264;51265;51266;51267;51268;51269;51270;51271;51272;51273;51274 51271 11 QAQLAQTLQQQEQASQGLR QDQELAGLKQQAKEKQAQLAQTLQQQEQAS AQTLQQQEQASQGLRHQVEQLSSSLKQKEQ K Q A L R H 3 1 0 0 0 8 1 1 0 0 3 0 0 0 0 1 1 0 0 0 0 0 19 0 2125.0876 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 532 550 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 8.083E-183 311.69 4 2 0.64376 0.86415 36.994 6 Median 0.68856 0.91959 11.59 4 0 Median 0.30339 0.46905 4.5055 2 0 Median 89848000 60753000 29096000 46058000 27307000 18751000 43790000 33445000 10345000 9448 148;1499;590 9707 34032;34033;34034;34035;34036;34037 51275;51276;51277;51278;51279;51280;51281;51282;51283;51284;51285;51286;51287 51277 13 QAQQERDELADEIANSSGK IQLQEELAAAERAKRQAQQERDELADEIAN ERDELADEIANSSGKGALALEEKRRLEARI R Q A G K G 3 1 1 2 0 3 3 1 0 1 1 1 0 0 0 2 0 0 0 0 0 0 19 1 2087.972 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1698 1716 MYH9;FLJ00279 Myosin-9 no no 3 2.1486E-13 126.25 4 0.98638 1.2805 18.47 4 Median 0.98638 1.2805 18.47 4 0 Median NaN NaN NaN 0 0 Median 71156000 35954000 35202000 71156000 35954000 35202000 0 0 0 9449 61;490 9708 34038;34039;34040;34041 51288;51289;51290;51291;51292;51293;51294;51295;51296;51297 51296 10 QAQQQQQQQQGSRPPGLSK PTLDENIFPKQISLRQAQQQQQQQQGSRPP QQQQQQGSRPPGLSKSQVKLMDLEDCALWE R Q A S K S 1 1 0 0 0 9 0 2 0 0 1 1 0 0 2 2 0 0 0 0 0 0 19 1 2121.0675 B9EGR5;Q8IWI9;H3BP52;H3BTF4;Q9H6M4 B9EGR5 972 990 MGA MAX gene-associated protein yes no 3 0.0002301 81.594 1 1 1.119 1.4795 52.48 2 Median 0.80803 1.0208 NaN 1 0 Median 1.5497 2.1442 NaN 1 0 Median 2273500 1014500 1258900 1057800 578560 479230 1215700 435970 779710 9450 930 9709 34042;34043 51298;51299;51300 51299 3 QAQREDALELTEK IEELIAKSKQEKRERQAQREDALELTEKLD ERQAQREDALELTEKLDQDWKEIQTLLSHK R Q A E K L 2 1 0 1 0 2 3 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 13 1 1529.7686 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 208 220 NOP14 Nucleolar protein 14 yes no 2 1.2453E-10 141.08 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9451 652 9710 34044 51301 51301 1 QASPNIVIALAGNK DTFARAKNWVKELQRQASPNIVIALAGNKA RQASPNIVIALAGNKADLASKRAVEFQEAQ R Q A N K A 3 0 2 0 0 1 0 1 0 2 1 1 0 0 1 1 0 0 0 1 0 0 14 0 1394.7882 A0A024R1U4;P51148;K7ERI8;K7ERQ8;K7ENY4 A0A024R1U4 122 135 RAB5C Ras-related protein Rab-5C yes no 2 0.025914 84.687 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9452 71 9711 34045 51302 51302 1 QATINIGTIGHVAHGK DVTKLTPLSHEVISRQATINIGTIGHVAHG ATINIGTIGHVAHGKSTVVKAISGVHTVRF R Q A G K S 2 0 1 0 0 1 0 3 2 3 0 1 0 0 0 0 2 0 0 1 0 0 16 0 1615.8794 P41091;Q2VIR3;F8W810;H7BZU1 P41091 39 54 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 3 0.030585 19.071 1 0.37295 0.47413 NaN 1 Median 0.37295 0.47413 NaN 1 0 Median NaN NaN NaN 0 0 Median 6487800 4620300 1867500 6487800 4620300 1867500 0 0 0 9453 1333 9712 34046 51303 51303 1 QATTIIADNIIFLSDQTK KIDYGEYMDKNNVRRQATTIIADNIIFLSD TIIADNIIFLSDQTKEKE____________ R Q A T K E 2 0 1 2 0 2 0 0 0 4 1 1 0 1 0 1 3 0 0 0 0 0 18 0 1991.0575 Q567R6;A4D1U3;Q04837 Q567R6 128 145 SSBP1 Single-stranded DNA-binding protein;Single-stranded DNA-binding protein, mitochondrial yes no 2 5.1962E-19 150.34 3 0.36674 0.48224 33.769 3 Median 0.36674 0.48224 33.769 3 0 Median NaN NaN NaN 0 0 Median 9173700 6519900 2653900 9173700 6519900 2653900 0 0 0 9454 550 9713 34047;34048;34049 51304;51305;51306;51307 51304 3 QAVDSPAASFCR DVLIRLSPRHIPRHRQAVDSPAASFCRGLL RHRQAVDSPAASFCRGLLSQPGPSSLMPVL R Q A C R G 3 1 0 1 1 1 0 0 0 0 0 0 0 1 1 2 0 0 0 1 0 0 12 0 1307.5928 Q9H6R4;B4DF80;B3KPN5;A0A0C4DFX0 Q9H6R4 1024 1035 NOL6 Nucleolar protein 6 yes no 2 0.00035656 118.03 4 0.94162 1.2511 16.092 3 Median 0.94162 1.2511 16.092 3 0 Median NaN NaN NaN 0 0 Median 34772000 18027000 16745000 34772000 18027000 16745000 0 0 0 9455 1738 9714 34050;34051;34052;34053 51308;51309;51310;51311;51312;51313 51312 6 QAVDVSPLR REDSTRIGRAGTVRRQAVDVSPLRRVNQAI AGTVRRQAVDVSPLRRVNQAIWLLCTGARE R Q A L R R 1 1 0 1 0 1 0 0 0 0 1 0 0 0 1 1 0 0 0 2 0 0 9 0 983.53999 M0R0F0;Q53G25;A0A024R4Q8;M0R0R2;P46782;M0QZN2 M0R0F0 137 145 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 2 0.0070124 90.709 1 2 1.2804 1.8752 39.665 3 Median 0.69687 0.94829 NaN 1 0 Median 1.3221 1.8849 0.72782 2 0 Median 51235000 24752000 26484000 26618000 14967000 11651000 24618000 9784500 14833000 9456 126 9715 34054;34055;34056 51314;51315;51316;51317 51315 4 QAVDVSPLRR REDSTRIGRAGTVRRQAVDVSPLRRVNQAI GTVRRQAVDVSPLRRVNQAIWLLCTGAREA R Q A R R V 1 2 0 1 0 1 0 0 0 0 1 0 0 0 1 1 0 0 0 2 0 0 10 1 1139.6411 M0R0F0;Q53G25;A0A024R4Q8;M0R0R2;P46782;M0QZN2 M0R0F0 137 146 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 2 0.0057898 76.221 1 0.83108 1.1154 NaN 1 Median 0.83108 1.1154 NaN 1 0 Median NaN NaN NaN 0 0 Median 18665000 10224000 8440400 18665000 10224000 8440400 0 0 0 9457 126 9716 34057 51318 51318 1 QAVPIVEPQEPEIK ERRKPGAQPRKRKTKQAVPIVEPQEPEIKL KQAVPIVEPQEPEIKLKYATQPLDKTDAKN K Q A I K L 1 0 0 0 0 2 3 0 0 2 0 1 0 0 3 0 0 0 0 2 0 0 14 0 1575.8508 W5ZR30;Q9UGU0 W5ZR30 1600 1613 TCF20 Transcription factor 20 yes no 2 0.0020132 69.451 3 0.91244 1.1765 1.1522 3 Median 0.91244 1.1765 1.1522 3 0 Median NaN NaN NaN 0 0 Median 10812000 5264100 5547900 10812000 5264100 5547900 0 0 0 9458 1783 9717 34058;34059;34060 51319;51320;51321;51322;51323 51323 5 QAVSELDEEQHLEDEELQPPR PREPPQSARRKRSYKQAVSELDEEQHLEDE DEEQHLEDEELQPPRSKTPSSPCPASKVVR K Q A P R S 1 1 0 2 0 3 6 0 1 0 3 0 0 0 2 1 0 0 0 1 0 0 21 0 2490.151 Q9NQS7;B3KPD3 Q9NQS7 455 475 INCENP Inner centromere protein yes no 3 2.6432E-23 117.65 4 2 0.91338 1.2524 7.5692 6 Median 0.91762 1.2575 3.2338 4 0 Median 0.68501 1.1125 2.0646 2 0 Median 416570000 230670000 185900000 283880000 147040000 136840000 132700000 83635000 49061000 9459 1752 9718 34061;34062;34063;34064;34065;34066 51324;51325;51326;51327;51328;51329;51330;51331;51332;51333;51334;51335;51336;51337;51338;51339;51340;51341;51342 51339 19 QAVTNPNNTFYATK FTADGERLVGMPAKRQAVTNPNNTFYATKR RQAVTNPNNTFYATKRLIGRRYDDPEVQKD R Q A T K R 2 0 3 0 0 1 0 0 0 0 0 1 0 1 1 0 3 0 1 1 0 0 14 0 1567.7631 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;D6RA73;D6RJI2 B7Z4V2 94 107 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 0.019883 45.661 1 0.47886 0.62325 NaN 1 Median 0.47886 0.62325 NaN 1 0 Median NaN NaN NaN 0 0 Median 4920100 3157200 1762900 4920100 3157200 1762900 0 0 0 9460 910 9719 34067 51343 51343 0 QAYEDLRK VAELDKITYERDSFRQAYEDLRKQRLNEFM YERDSFRQAYEDLRKQRLNEFMAGFYIITN R Q A R K Q 1 1 0 1 0 1 1 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 8 1 1021.5193 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 1122 1129 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.0012274 98.458 1 1 0.63402 0.88821 3.9818 2 Median 0.66471 0.86355 NaN 1 0 Median 0.60475 0.91357 NaN 1 0 Median 22410000 13005000 9405000 15262000 8807500 6454200 7148600 4197900 2950800 9461 1760 9720 34068;34069 51344;51345 51344 1 QCALCLTYGDDSANDAGR DSPELNPPPGIEDNRQCALCLTYGDDSAND LCLTYGDDSANDAGRLLYIGQNEWTHVNCA R Q C G R L 3 1 1 3 2 1 0 2 0 0 2 0 0 0 0 1 1 0 1 0 0 0 18 0 1985.8207 Q03164 Q03164 1872 1889 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 3.2714E-51 204.13 4 1.0588 1.4533 18.79 4 Median 1.0588 1.4533 18.79 4 0 Median NaN NaN NaN 0 0 Median 14170000 7061700 7108300 14170000 7061700 7108300 0 0 0 9462 1438 9721 34070;34071;34072;34073 51346;51347;51348;51349;51350;51351;51352;51353 51348 8 QCANLQAAIADAEQR RMIQRLRSEIDHVKKQCANLQAAIADAEQR QCANLQAAIADAEQRGEMALKDAKNKLEGL K Q C Q R G 5 1 1 1 1 3 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 15 0 1657.7842 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;B4DWU6;CON__P04259;B4DKV4 B4DRR0 372 386 KRT6A Keratin, type II cytoskeletal 6A no no 2 0.015646 53.252 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1186700 1186700 0 1186700 1186700 0 0 0 0 + 9463 459;953 9722 34074 51354 51354 1 QCANLQNAIADAEQR RMIQRLRAEIDNVKKQCANLQNAIADAEQR QCANLQNAIADAEQRGELALKDARNKLAEL K Q C Q R G 4 1 2 1 1 3 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 15 0 1700.79 CON__P13647;P13647;B4E1T1;B4DL32;H0YI76 CON__P13647 406 420 KRT5 Keratin, type II cytoskeletal 5 no no 2 4.7501E-05 78.692 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6600900 6600900 0 6600900 6600900 0 0 0 0 + 9464 961 9723 34075;34076 51355;51356 51355 2 QCANLQNAIADAEQRGELALK RMIQRLRAEIDNVKKQCANLQNAIADAEQR NAIADAEQRGELALKDARNKLAELEEALQK K Q C L K D 5 1 2 1 1 3 2 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 21 1 2312.1543 CON__P13647;P13647;B4E1T1;B4DL32;H0YI76 CON__P13647 406 426 KRT5 Keratin, type II cytoskeletal 5 no no 3 0.0013993 77.505 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6198700 6198700 0 6198700 6198700 0 0 0 0 + 9465 961 9724 34077 51357 51357 1 QCGNLTEDLK ELQENTICSLVESQKQCGNLTEDLKTIKQT VESQKQCGNLTEDLKTIKQTHSQELCKLMN K Q C L K T 0 0 1 1 1 1 1 1 0 0 2 1 0 0 0 0 1 0 0 0 0 0 10 0 1176.5445 P52732;B2RAM6;Q59GZ5 P52732 703 712 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 2 0.018993 76.17 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5190600 5190600 0 5190600 5190600 0 0 0 0 9466 1366 9725 34078;34079 51358;51359 51359 2 QCIRPAEIVASLLEGEENTCGK GSKSPKTPTGLRRGRQCIRPAEIVASLLEG IVASLLEGEENTCGKQKPKENNLKPKFQAF R Q C G K Q 2 1 1 0 2 1 4 2 0 2 2 1 0 0 1 1 1 0 0 1 0 0 22 1 2473.1941 F5H101;A0A024R250;Q76FK4;F8WE42;Q6AI50;A6H8Z4 F5H101 537 558 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 3 0.014701 42.209 1 0.69292 0.88667 NaN 1 Median 0.69292 0.88667 NaN 1 0 Median NaN NaN NaN 0 0 Median 1296000 854120 441860 1296000 854120 441860 0 0 0 9467 80 9726 34080 51360 51360 1 QCLAEFK LEGPKKAVNDVNGLKQCLAEFKRDLEWVER VNDVNGLKQCLAEFKRDLEWVERLDVTLGP K Q C F K R 1 0 0 0 1 1 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 7 0 894.42694 Q6IB29;H7C2Q8;Q99848;B4DHA6;B4DRX8 Q6IB29 55 61 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 0.026202 76.774 2 0.95075 1.1736 6.5222 2 Median 0.95075 1.1736 6.5222 2 0 Median NaN NaN NaN 0 0 Median 34221000 16868000 17353000 34221000 16868000 17353000 0 0 0 9468 1123 9727 34081;34082 51361;51362 51362 2 QCLAEFKR LEGPKKAVNDVNGLKQCLAEFKRDLEWVER NDVNGLKQCLAEFKRDLEWVERLDVTLGPV K Q C K R D 1 1 0 0 1 1 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 8 1 1050.528 Q6IB29;H7C2Q8;Q99848;B4DHA6;B4DRX8 Q6IB29 55 62 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2;3 0.0054223 85.064 7 1.0232 1.3387 26.59 6 Median 1.0232 1.3387 26.59 6 0 Median NaN NaN NaN 0 0 Median 197500000 107520000 89979000 197500000 107520000 89979000 0 0 0 9469 1123 9728 34083;34084;34085;34086;34087;34088;34089 51363;51364;51365;51366;51367;51368;51369;51370;51371;51372 51367 10 QCLILGEQIDLLQQYR MDKLRGMVFGAPVPKQCLILGEQIDLLQQY CLILGEQIDLLQQYRSAVCKLDSVNKDLNS K Q C Y R S 0 1 0 1 1 4 1 1 0 2 4 0 0 0 0 0 0 0 1 0 0 0 16 0 1989.0353 A6NHR9 A6NHR9 1898 1913 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.0087849 32.498 1 0.70183 0.9396 NaN 1 Median 0.70183 0.9396 NaN 1 0 Median NaN NaN NaN 0 0 Median 1812900 1054400 758540 1812900 1054400 758540 0 0 0 9470 568 9729 34090 51373 51373 1 QCLPSLDLSCK LLSLVYKGIAPGDERQCLPSLDLSCKQLAS GDERQCLPSLDLSCKQLASGLLELAFAFGG R Q C C K Q 0 0 0 1 2 1 0 0 0 0 3 1 0 0 1 2 0 0 0 0 0 0 11 0 1319.6214 P78527 P78527 1498 1508 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0066496 86.189 1 0.62295 0.82519 NaN 1 Median 0.62295 0.82519 NaN 1 0 Median NaN NaN NaN 0 0 Median 2631900 1780600 851260 2631900 1780600 851260 0 0 0 9471 1427 9730 34091 51374 51374 1 QCPCYLAVR NRFPGCRCKAQCNTKQCPCYLAVRECDPDL AQCNTKQCPCYLAVRECDPDLCLTCGAADH K Q C V R E 1 1 0 0 2 1 0 0 0 0 1 0 0 0 1 0 0 0 1 1 0 0 9 0 1165.5372 A0A090N8E9;Q15910;S4S3R8;Q75MP9;Q75MQ0;F2YMM1;A0A0A0MSY9;Q92800 A0A090N8E9 575 583 EZH2;EZH1 Histone-lysine N-methyltransferase EZH2;Histone-lysine N-methyltransferase EZH1 no no 2 0.025479 48.561 2 0.9252 1.2508 10.33 2 Median 0.9252 1.2508 10.33 2 0 Median NaN NaN NaN 0 0 Median 20390000 9971200 10419000 20390000 9971200 10419000 0 0 0 9472 381;401 9731 34092;34093 51375;51376;51377 51377 3 QCSDLLSQAQYHVAR DKMRFDLALAATEARQCSDLLSQAQYHVAR QCSDLLSQAQYHVARARKQDEEERELRAKQ R Q C A R A 2 1 0 1 1 3 0 0 1 0 2 0 0 0 0 2 0 0 1 1 0 0 15 0 1774.8421 A8K6X9;Q6PD62 A8K6X9 816 830 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 3 0.0001325 131.06 4 0.77173 1.0492 9.9796 4 Median 0.77173 1.0492 9.9796 4 0 Median NaN NaN NaN 0 0 Median 39125000 21382000 17743000 39125000 21382000 17743000 0 0 0 9473 629 9732 34094;34095;34096;34097 51378;51379;51380;51381;51382;51383;51384 51379 7 QCVPFRR IRKATKYLKDVTLQKQCVPFRRYNGGVGRC LKDVTLQKQCVPFRRYNGGVGRCAQAKQWG K Q C R R Y 0 2 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 7 1 961.4916 A0A087WXM6;J3QQT2;J3KRX5;A0A024R261;A0A0A6YYL6;P18621;J3QLC8;A0A0A0MRF8;J3KRB3;A0A087WWH0;J3QS96;A0A087WY81 A0A087WXM6 56 62 RPL17;hCG_24487;RPL17-C18orf32 60S ribosomal protein L17 yes no 2;3 0.0051186 80.555 5 1 0.75001 1.0177 50.207 6 Median 0.76261 1.0292 11.662 5 0 Median 0.22334 0.3201 NaN 1 0 Median 352380000 198800000 153580000 341350000 189890000 151460000 11035000 8912500 2122400 9474 81 9733 34098;34099;34100;34101;34102;34103 51385;51386;51387;51388;51389;51390;51391;51392;51393 51389 9 QDAQSLHGDIPQK TKKEAQELSQNSAIKQDAQSLHGDIPQKQR IKQDAQSLHGDIPQKQREITLKGFRNGSFG K Q D Q K Q 1 0 0 2 0 3 0 1 1 1 1 1 0 0 1 1 0 0 0 0 0 0 13 0 1435.7056 Q9NR30 Q9NR30 462 474 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 2.0977E-110 256.43 7 4 0.66123 0.88159 8.1304 11 Median 0.70599 0.9015 8.5608 7 0 Median 0.55091 0.82659 6.2932 4 0 Linear 289710000 175190000 114520000 168970000 97205000 71761000 120740000 77988000 42755000 9475 1756 9734 34104;34105;34106;34107;34108;34109;34110;34111;34112;34113;34114 51394;51395;51396;51397;51398;51399;51400;51401;51402;51403;51404;51405;51406;51407;51408;51409;51410;51411 51401 18 QDAQVVLYR EQKREKEIKSELKMKQDAQVVLYRSYRHGD SELKMKQDAQVVLYRSYRHGDLPDIQIKHS K Q D Y R S 1 1 0 1 0 2 0 0 0 0 1 0 0 0 0 0 0 0 1 2 0 0 9 0 1090.5771 P78527 P78527 2765 2773 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 7.5078E-06 96.034 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6384600 0 6384600 6384600 0 6384600 0 0 0 9476 1427 9735 34115;34116;34117;34118 51412;51413;51414;51415 51414 4 QDDQQPLDLEGVK SPEGPDPPVLTEVSKQDDQQPLDLEGVKRK SKQDDQQPLDLEGVKRKMDQGNYTSVLEFS K Q D V K R 0 0 0 3 0 3 1 1 0 0 2 1 0 0 1 0 0 0 0 1 0 0 13 0 1483.7155 Q03164 Q03164 1700 1712 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 2.3585E-12 158.56 3 2 1.0519 1.3123 21.834 5 Median 0.90739 1.1936 12.983 3 0 Median 1.1214 1.6712 4.8732 2 0 Median 32628000 16052000 16576000 15790000 8169600 7620500 16838000 7882400 8955600 9477 1438 9736 34119;34120;34121;34122;34123 51416;51417;51418;51419;51420;51421;51422;51423 51417 8 QDEQVGLPGK ATFIEELEAVEAKEKQDEQVGLPGKGGKAK EAKEKQDEQVGLPGKGGKAKGKKTQMAEVL K Q D G K G 0 0 0 1 0 2 1 2 0 0 1 1 0 0 1 0 0 0 0 1 0 0 10 0 1069.5404 P11388 P11388 1187 1196 TOP2A DNA topoisomerase 2-alpha yes yes 2 1.1328E-16 191.17 3 0.8706 1.1504 5.1333 3 Plateau 0.8706 1.1504 5.1333 3 0 Plateau NaN NaN NaN 0 0 Median 406970000 217320000 189650000 406970000 217320000 189650000 0 0 0 9478 1256 9737 34124;34125;34126 51424;51425;51426;51427;51428 51428 5 QDHAQQLATAAEER EQQLKEVAEKQEATRQDHAQQLATAAEERE RQDHAQQLATAAEEREASLRERDAALKQLE R Q D E R E 4 1 0 1 0 3 2 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 14 0 1566.7386 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 579 592 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2;3 6.9257E-128 269.44 5 2 0.5625 0.75735 37.079 4 Median 0.68868 0.9235 19.027 3 0 Plateau 0.29803 0.41264 NaN 1 0 Median 55757000 41029000 14728000 35247000 22968000 12279000 20510000 18061000 2448600 9479 148;1499;590 9738 34127;34128;34129;34130;34131;34132;34133 51429;51430;51431;51432;51433;51434;51435;51436 51433 8 QDIAFAYQR VTIVNILTNRSNAQRQDIAFAYQRRTKKEL RSNAQRQDIAFAYQRRTKKELASALKSALS R Q D Q R R 2 1 0 1 0 2 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 9 0 1110.5458 H0YKS4;H0YMD0;H0YMU9;H0YN42;V9HW65;A0A024R5Z7;P07355;H0YMM1;B4DNH8;H0YKL9;H0YKZ7;H0YLV6;H0YMT9;H0YKX9;H0YMW4;H0YM50;H0YKV8 H0YKS4 69 77 ANXA2;HEL-S-270 Annexin;Annexin A2 yes no 2 0.0043468 74.127 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4234800 4234800 0 4234800 4234800 0 0 0 0 9480 153 9739 34134 51437 51437 1 QDILEEIK SESRQLWIWLHPTLKQDILEEIKAACQCVE WLHPTLKQDILEEIKAACQCVEPIKSAVCI K Q D I K A 0 0 0 1 0 1 2 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 8 0 986.52843 Q96F88;Q99575 Q96F88 337 344 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 0.020271 98.629 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9481 1685 9740 34135 51438 51438 1 QDIVLTTYNILTHDYGTK YYGPDRIREPALLSKQDIVLTTYNILTHDY VLTTYNILTHDYGTKGDSPLHSIRWLRVIL K Q D T K G 0 0 1 2 0 1 0 1 1 2 2 1 0 0 0 0 4 0 2 1 0 0 18 0 2094.0633 Q59GQ7;A0A0C4DGA6;Q14527;A8K5B6 Q59GQ7 524 541 HLTF Helicase-like transcription factor yes no 3 0.0071404 50.87 2 0.51165 0.6579 5.1796 2 Median 0.51165 0.6579 5.1796 2 0 Median NaN NaN NaN 0 0 Median 10277000 6353400 3923900 10277000 6353400 3923900 0 0 0 9482 425 9741 34136;34137 51439;51440 51439 2 QDQPIDFSEDARPSPCYQLAQR ARGSGIHRLAFLLFKQDQPIDFSEDARPSP SEDARPSPCYQLAQRTFRTFDFYKKHQETM K Q D Q R T 2 2 0 3 1 4 1 0 0 1 1 0 0 1 3 2 0 0 1 0 0 0 22 1 2620.1976 B2R894;Q96DV4 B2R894 241 262 MRPL38 39S ribosomal protein L38, mitochondrial yes no 3 0.0059936 35.834 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1637900 1637900 0 1637900 1637900 0 0 0 0 9483 715 9742 34138 51441 51441 1 QDQSNVQIAAAPTPEK ITKSHTVAIDNQIFKQDQSNVQIAAAPTPE DQSNVQIAAAPTPEKEMMLQNLMTTSEDGK K Q D E K E 3 0 1 1 0 3 1 0 0 1 0 1 0 0 2 1 1 0 0 1 0 0 16 0 1695.8428 Q8NG31;E9PPJ1 Q8NG31 527 542 CASC5 Protein CASC5 yes no 2 1.1286E-06 135.94 1 1 0.29308 0.39889 NaN 1 Median NaN NaN NaN 0 0 Median 0.29308 0.39889 NaN 1 0 Median 4539300 2300500 2238800 768400 0 768400 3770900 2300500 1470400 9484 1656 9743 34139;34140 51442;51443 51442 2 QDSINAYNEPNSTK YEYCRLDGQTPHDERQDSINAYNEPNSTKF RQDSINAYNEPNSTKFVFMLSTRAGGLGIN R Q D T K F 1 0 3 1 0 1 1 0 0 1 0 1 0 0 1 2 1 0 1 0 0 0 14 0 1579.7114 O60264;B7ZAX9;B4DZC0;Q4W5H1 O60264 539 552 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 3.7013E-37 205.07 4 1.6294 1.9891 22.274 3 Median 1.6294 1.9891 22.274 3 0 Median NaN NaN NaN 0 0 Median 51006000 15482000 35525000 51006000 15482000 35525000 0 0 0 9485 1189 9744 34141;34142;34143;34144 51444;51445;51446;51447;51448;51449;51450 51444 7 QDSLVINLNR KTREAEEKEKEGIVKQDSLVINLNRSNPKL EGIVKQDSLVINLNRSNPKLKDLYIRPNIA K Q D N R S 0 1 2 1 0 1 0 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1170.6357 Q9Y5B9 Q9Y5B9 648 657 SUPT16H FACT complex subunit SPT16 yes yes 2 5.0298E-28 215.42 5 2 0.73677 1.1279 14.293 6 Median 0.74919 1.026 15.302 4 0 Median 0.73677 1.2008 1.0837 2 0 Median 362060000 201730000 160320000 209020000 110280000 98743000 153030000 91453000 61581000 9486 1829 9745 34145;34146;34147;34148;34149;34150;34151 51451;51452;51453;51454;51455;51456;51457;51458;51459 51456 9 QDTYGDIYNFPIHAFDK QLDNAIEKELLERLKQDTYGDIYNFPIHAF TYGDIYNFPIHAFDKALEQQEAESDSSDTE K Q D D K A 1 0 1 3 0 1 0 1 1 2 0 1 0 2 1 0 1 0 2 0 0 0 17 0 2042.9374 Q9BXY0 Q9BXY0 172 188 MAK16 Protein MAK16 homolog yes yes 3 0.00017974 33.836 1 2 0.72633 1.0163 7.9903 3 Plateau 0.72633 0.8965 NaN 1 0 Median 0.6865 1.0281 1.6328 2 0 Median 56271000 33195000 23075000 36780000 22490000 14291000 19490000 10706000 8784500 9487 1724 9746 34152;34153;34154 51460;51461;51462 51460 3 QDVDDEYGVSQALAR DVSEVDARHIIENAKQDVDDEYGVSQALAR QDVDDEYGVSQALARGLQSYYAVAHAVTER K Q D A R G 2 1 0 3 0 2 1 1 0 0 1 0 0 0 0 1 0 0 1 2 0 0 15 0 1664.7642 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;Q59FZ6 A7E2E1 712 726 SMARCA4 Transcription activator BRG1 yes no 2 1.0906E-22 142.83 3 1 0.66064 0.90355 35.32 3 Median 0.63503 0.8641 6.3127 2 0 Median 1.146 1.5853 NaN 1 0 Median 23823000 11695000 12128000 13220000 7156700 6063700 10603000 4538700 6063900 9488 403 9747 34155;34156;34157;34158 51463;51464;51465;51466;51467 51464 5 QDVDNASLAR MLQREEAENTLQSFRQDVDNASLARLDLER LQSFRQDVDNASLARLDLERKVESLQEEIA R Q D A R L 2 1 1 2 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1087.5258 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;B0YJC5;Q5JVS8 V9HWE1 208 217 HEL113;VIM Vimentin yes no 2 2.4844E-11 140.83 1 1 0.85853 1.1881 32.211 2 Median 0.69646 0.9461 NaN 1 0 Median 1.0583 1.492 NaN 1 0 Median 53444000 31523000 21920000 47422000 28439000 18983000 6021700 3084700 2937000 9489 1245 9748 34159;34160 51468;51469;51470;51471 51469 4 QEAATLAANNTQLQAR KGEVLGDVLQLETLKQEAATLAANNTQLQA EAATLAANNTQLQARVEMLETERGQQEAKL K Q E A R V 5 1 2 0 0 3 1 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 16 0 1698.8649 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 420 435 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 7.6578E-130 290.1 4 2 0.45429 0.61651 39.157 6 Median 0.60269 0.80613 29.015 4 0 Median 0.25777 0.3908 7.8219 2 0 Median 85770000 58332000 27438000 51205000 32287000 18918000 34565000 26045000 8519900 9490 148;1499;590 9749 34161;34162;34163;34164;34165;34166 51472;51473;51474;51475;51476;51477;51478;51479;51480;51481 51472 10 QEAEIPGANLNVEGTSTPLLR ITTYSLVAKEIPTNKQEAEIPGANLNVEGT GANLNVEGTSTPLLRIAWARIILDEAHNVK K Q E L R I 2 1 2 0 0 1 3 2 0 1 3 0 0 0 2 1 2 0 0 1 0 0 21 0 2208.1386 A0A024R0F1;Q9UNY4 A0A024R0F1 708 728 TTF2 Transcription termination factor 2 yes no 2 1.8165E-22 130.95 4 0.80911 1.1273 0.24803 3 Median 0.80911 1.1273 0.24803 3 0 Median NaN NaN NaN 0 0 Median 15662000 9441800 6219700 15662000 9441800 6219700 0 0 0 9491 33 9750 34167;34168;34169;34170 51482;51483;51484;51485;51486;51487;51488 51485 7 QEAELGEPDPEQK KSSCSFETCPRPTEKQEAELGEPDPEQKRS EKQEAELGEPDPEQKRSRARERRREGRSKT K Q E Q K R 1 0 0 1 0 2 4 1 0 0 1 1 0 0 2 0 0 0 0 0 0 0 13 0 1468.6682 B9EGI2;U6FSN9;Q6WCQ1;J3KSW8;Q8N236 B9EGI2 514 526 MPRIP;Mprip-Ntrk1 fusion gene Tyrosine-protein kinase receptor;Myosin phosphatase Rho-interacting protein yes no 2 0.00044592 94.767 2 0.86874 1.1489 NaN 1 Median 0.86874 1.1489 NaN 1 0 Median NaN NaN NaN 0 0 Median 4428500 1366700 3061800 4428500 1366700 3061800 0 0 0 9492 928 9751 34171;34172 51489;51490 51490 2 QEAENQQLADAVLAGR YFLQQRDTLRRHVQKQEAENQQLADAVLAG EAENQQLADAVLAGRRQVEELQLQVQAQQQ K Q E G R R 4 1 1 1 0 3 2 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 16 0 1711.8489 D3DVB3;A0A087WT04;U3KQ54;Q6P1K2 D3DVB3 84 99 hCG_1999356;PMF1-BGLAP;PMF1 Polyamine-modulated factor 1 yes no 2 1.764E-42 179.67 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9493 330 9752 34173 51491 51491 1 QEAIDRFNAPGAQQFCFLLSTR YKYERIDGGITGNMRQEAIDRFNAPGAQQF NAPGAQQFCFLLSTRAGGLGINLATADTVI R Q E T R A 3 2 1 1 1 3 1 1 0 1 2 0 0 3 1 1 1 0 0 0 0 0 22 1 2568.2543 B3KY63;F5GWX5;A0A0C4DGG9;Q14839;Q8TDI0;K7EMY3;Q659F1;Q659D0;B3KRD4;Q6ZSZ4;F2Z2R5;F6T542;Q12873;B4DLC6 B3KY63 1080 1101 CHD4;CHD5;DKFZp434K213;DKFZp434P202;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 no no 3 5.0666E-26 140.47 4 0.7937 1.0828 22.119 4 Median 0.7937 1.0828 22.119 4 0 Median NaN NaN NaN 0 0 Median 63341000 33129000 30211000 63341000 33129000 30211000 0 0 0 9494 428;1458 9753 34174;34175;34176;34177 51492;51493;51494;51495;51496;51497;51498;51499 51495 8 QEDKDDLDVTELTNEDLLDQLVK AAVGRKATKKTDKPRQEDKDDLDVTELTNE VTELTNEDLLDQLVKYGVNPGPIVGTTRKL R Q E V K Y 0 0 1 6 0 2 3 0 0 0 5 2 0 0 0 0 2 0 0 2 0 0 23 1 2687.3025 A0A024RBE7;P42167;G5E972;A0A024RBH7;Q59G12;H0YJH7;P42166 P42166 104 126 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin no no 3 1.3456E-26 144.4 4 0.54755 0.67229 25.08 4 Median 0.54755 0.67229 25.08 4 0 Median NaN NaN NaN 0 0 Median 135680000 85826000 49859000 135680000 85826000 49859000 0 0 0 9495 1335;270 9754 34178;34179;34180;34181 51500;51501;51502;51503;51504;51505;51506;51507 51501 8 QEEDSYEIFICHANVIR IEAAFRNYIHRADARQEEDSYEIFICHANV EDSYEIFICHANVIRYIVCRALQFPPEGWL R Q E I R Y 1 1 1 1 1 1 3 0 1 3 0 0 0 1 0 1 0 0 1 1 0 0 17 0 2121.979 Q96HS1;F5GXG4 Q96HS1 219 235 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 3 1.9158E-09 121.18 3 0.70773 0.96997 5.0404 3 Median 0.70773 0.96997 5.0404 3 0 Median NaN NaN NaN 0 0 Median 25852000 15004000 10848000 25852000 15004000 10848000 0 0 0 9496 1688 9755 34182;34183;34184 51508;51509;51510;51511;51512;51513 51508 6 QEELEAALQR AEERGELALKDARAKQEELEAALQRGKQDM DARAKQEELEAALQRGKQDMARQLREYQEL K Q E Q R G 2 1 0 0 0 2 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1185.599 CON__P08729;Q96GE1;CON__Q3KNV1;P08729;B3KY79 CON__Q3KNV1 354 363 KRT7 Keratin, type II cytoskeletal 7 no no 2 0.0072696 116.37 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3202000 3202000 0 3202000 3202000 0 0 0 0 + 9497 968;957 9756 34185;34186 51514;51515 51515 2 QEIAEINR QVTAGRHGDDLRNTKQEIAEINRMIQRLRS DDLRNTKQEIAEINRMIQRLRSEIDHVKKQ K Q E N R M 1 1 1 0 0 1 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 8 0 971.50361 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;B4DRY0;CON__P04259;B4DKV4 B4DRR0 350 357 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 0.0069611 75.761 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8930400 8930400 0 8930400 8930400 0 0 0 0 + 9498 459;953 9757 34187 51516 51516 1 QEIECQNQEYSLLLSIK QEQISNLEAQITDVRQEIECQNQEYSLLLS IECQNQEYSLLLSIKMRLEKEIETYHNLLE R Q E I K M 0 0 1 0 1 3 3 0 0 2 3 1 0 0 0 2 0 0 1 0 0 0 17 0 2094.0303 CON__P35527;P35527;K7EQQ3 CON__P35527 428 444 KRT9 Keratin, type I cytoskeletal 9 yes no 2 6.4688E-258 342.58 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34592000 34592000 0 34592000 34592000 0 0 0 0 + 9499 963 9758 34188;34189 51517;51518 51517 2 QELAETLANLER IPDTRRELAELVKRKQELAETLANLERQIY KRKQELAETLANLERQIYAFEGSYLEDTQM K Q E E R Q 2 1 1 0 0 1 3 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 12 0 1385.7151 Q9HAF1 Q9HAF1 27 38 MEAF6 Chromatin modification-related protein MEAF6 yes yes 2 0.016446 54.259 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9500 1748 9759 34190 51519 51519 1 QELILSNSEDK RGHYNNVSCAVFHPRQELILSNSEDKSIRV FHPRQELILSNSEDKSIRVWDMSKRTGVQT R Q E D K S 0 0 1 1 0 1 2 0 0 1 2 1 0 0 0 2 0 0 0 0 0 0 11 0 1274.6354 P53621 P53621 261 271 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.0011981 128.35 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9349200 9349200 0 9349200 9349200 0 0 0 0 9501 1371 9760 34191;34192;34193 51520;51521;51522 51520 3 QELSFAAR AAVDLIIKSHQGLDRQELSFAARSFYYKLR SHQGLDRQELSFAARSFYYKLRAAEQYTPK R Q E A R S 2 1 0 0 0 1 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 8 0 920.47158 A0A0U1RQF0;P49327 A0A0U1RQF0 2412 2419 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.04544 43.448 1 0.98734 1.2919 NaN 1 Median 0.98734 1.2919 NaN 1 0 Median NaN NaN NaN 0 0 Median 7351800 4105800 3246000 7351800 4105800 3246000 0 0 0 9502 486 9761 34194 51523 51523 1 QELSHALYQHDAACR MLHSFTLRQQLQTTRQELSHALYQHDAACR QELSHALYQHDAACRVIARLTKEVTAAREA R Q E C R V 3 1 0 1 1 2 1 0 2 0 2 0 0 0 0 1 0 0 1 0 0 0 15 0 1797.8217 Q9UMS4;F5GY56;F5H2I0 Q9UMS4 101 115 PRPF19 Pre-mRNA-processing factor 19 yes no 3 4.5411E-06 82.483 3 0.70287 0.94397 9.1335 3 Median 0.70287 0.94397 9.1335 3 0 Median NaN NaN NaN 0 0 Median 35595000 19662000 15933000 35595000 19662000 15933000 0 0 0 9503 1795 9762 34195;34196;34197 51524;51525;51526;51527 51525 4 QELTSQAERAEELGQELK REEAEKQRVASENLRQELTSQAERAEELGQ TSQAERAEELGQELKAWQEKFFQKEQALST R Q E L K A 2 1 0 0 0 3 5 1 0 0 3 1 0 0 0 1 1 0 0 0 0 0 18 1 2058.0229 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1313 1330 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 1.7042E-07 110.32 3 1 0.3653 0.52703 53.975 2 Median 0.56852 0.77195 NaN 1 0 Median 0.23472 0.35982 NaN 1 0 Median 30564000 10701000 19863000 20888000 3705700 17182000 9676200 6995600 2680700 9504 148;1499 9763 34198;34199;34200;34201 51528;51529;51530;51531;51532 51528 5 QEMAFYSLPEFEEWK LEEFITPIVKVSKNKQEMAFYSLPEFEEWK QEMAFYSLPEFEEWKSSTPNHKKWKVKYYK K Q E W K S 1 0 0 0 0 1 4 0 0 0 1 1 1 2 1 1 0 1 1 0 0 0 15 0 1932.8604 P11388 P11388 585 599 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.00073682 47.352 1 0.60205 0.91058 NaN 1 Median NaN NaN NaN 0 0 Median 0.60205 0.91058 NaN 1 0 Median 16418000 9553400 6864800 0 0 0 16418000 9553400 6864800 9505 1256 9764 34202 51533 51533 517 1 QEMLVQYLQDAYSFSR MSDPEESRGNDELVKQEMLVQYLQDAYSFS EMLVQYLQDAYSFSRKITEAIGIISKMMYE K Q E S R K 1 1 0 1 0 3 1 0 0 0 2 0 1 1 0 2 0 0 2 1 0 0 16 0 1976.9302 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 617 632 NCAPD2 Condensin complex subunit 1 yes no 2 0.00087295 91.202 2 1 0.65373 0.97215 10.875 3 Median 0.6698 0.92485 14.831 2 0 Median 0.65373 0.97215 NaN 1 0 Median 18199000 10583000 7616300 3431200 1961700 1469500 14768000 8621300 6146800 9506 757 9765;9766 34203;34204;34205 51534;51535;51536 51535 275 3 QENEDSSDATTPVPR LFQLWLETKDQAFCKQENEDSSDATTPVPR QENEDSSDATTPVPRVRTDYVVRPSTGEEK K Q E P R V 1 1 1 2 0 1 2 0 0 0 0 0 0 0 2 2 2 0 0 1 0 0 15 0 1644.7227 A0A024R3K9;A0A024R3N2;Q6P4R8 A0A024R3K9 489 503 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2 1.8789E-05 74.76 2 2 0.82001 1.0422 24.788 3 Median 0.55132 0.73231 NaN 1 0 Median 0.86871 1.1095 8.8433 2 0 Median 11758000 6877500 4880500 3759000 2930200 828840 7999000 3947300 4051700 9507 101 9767 34206;34207;34208;34209 51537;51538;51539;51540 51539 4 QEPENDQGVVSQAGKDDR GSEASDTVEGVLPSKQEPENDQGVVSQAGK ENDQGVVSQAGKDDRESKLEGKAAQDIKDE K Q E D R E 1 1 1 3 0 3 2 2 0 0 0 1 0 0 1 1 0 0 0 2 0 0 18 1 1970.893 Q9BTC0 Q9BTC0 217 234 DIDO1 Death-inducer obliterator 1 yes yes 3 0.0018036 31.951 1 0.66876 1.0012 NaN 1 Median NaN NaN NaN 0 0 Median 0.66876 1.0012 NaN 1 0 Median 4675500 2731300 1944200 0 0 0 4675500 2731300 1944200 9508 1713 9768 34210 51541 51541 1 QEPLLIGSTK PQELNGITRALCATRQEPLLIGSTKSNMGH LCATRQEPLLIGSTKSNMGHPEPASGLAAL R Q E T K S 0 0 0 0 0 1 1 1 0 1 2 1 0 0 1 1 1 0 0 0 0 0 10 0 1084.6128 A0A0U1RQF0;P49327 A0A0U1RQF0 317 326 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00823 66.19 2 0.73939 0.93702 24.2 2 Median 0.73939 0.93702 24.2 2 0 Median NaN NaN NaN 0 0 Median 9718700 5673000 4045700 9718700 5673000 4045700 0 0 0 9509 486 9769 34211;34212 51542;51543 51543 2 QEQHEAQAQVAELELQLR SRKVEELQACVETARQEQHEAQAQVAELEL HEAQAQVAELELQLRSEQQKATEKERVAQE R Q E L R S 3 1 0 0 0 5 4 0 1 0 3 0 0 0 0 0 0 0 0 1 0 0 18 0 2119.0658 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 664 681 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2;3 8.5891E-18 101.96 5 1 0.61171 0.83759 42.013 4 Median 0.64978 0.87925 8.9019 3 0 Median 0.26989 0.38223 NaN 1 0 Median 38394000 25744000 12649000 31340000 20474000 10866000 7053100 5270000 1783100 9510 148;1499;590 9770 34213;34214;34215;34216;34217;34218 51544;51545;51546;51547;51548;51549;51550 51547 7 QEQINCVTREPLTADEEEALK RRGKRGQNGFKEFTRQEQINCVTREPLTAD VTREPLTADEEEALKQEHQRKEKELLEKIQ R Q E L K Q 2 1 1 1 1 2 5 0 0 1 2 1 0 0 1 0 2 0 0 1 0 0 21 1 2472.1802 D3DS96;Q9NRL2;Q59G54 D3DS96 758 778 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 3 1.3096E-09 112.44 1 0.57194 0.76731 NaN 1 Median 0.57194 0.76731 NaN 1 0 Median NaN NaN NaN 0 0 Median 3721900 2412300 1309600 3721900 2412300 1309600 0 0 0 9511 979 9771 34219 51551;51552 51551 2 QEQLTPGVVYVR KEVAQVRKRITQRKKQEQLTPGVVYVRHLP RKKQEQLTPGVVYVRHLPNLLDETQIFSYF K Q E V R H 0 1 0 0 0 2 1 1 0 0 1 0 0 0 1 0 1 0 1 3 0 0 12 0 1387.746 Q9BYG3;B4DSM4 Q9BYG3 39 50 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2 0.00029088 114.51 3 0.98317 1.3504 1.7701 2 Median 0.98317 1.3504 1.7701 2 0 Median NaN NaN NaN 0 0 Median 10441000 4267600 6173600 10441000 4267600 6173600 0 0 0 9512 1726 9772 34220;34221;34222 51553;51554;51555;51556 51555 4 QEQQEGPVGPAPSRPALQEK DRKAIARFQQGQQGRQEQQEGPVGPAPSRP GPVGPAPSRPALQEKQPEKEEEEEAGESVE R Q E E K Q 2 1 0 0 0 4 3 2 0 0 1 1 0 0 4 1 0 0 0 1 0 0 20 1 2145.0814 Q8TDD1 Q8TDD1 612 631 DDX54 ATP-dependent RNA helicase DDX54 yes yes 3 3.0427E-24 139.49 4 2 0.71407 1.0641 14.246 6 Median 0.82647 1.0809 18.059 4 0 Median 0.62908 1.06 4.7323 2 0 Median 194800000 113680000 81121000 142550000 81116000 61434000 52249000 32562000 19687000 9513 1658 9773 34223;34224;34225;34226;34227;34228 51557;51558;51559;51560;51561;51562;51563;51564 51559 8 QESDEESRPQNANYPR SGPPENYDFPVVIVKQESDEESRPQNANYP ESDEESRPQNANYPRSILTSLLLNSSQSST K Q E P R S 1 2 2 1 0 2 3 0 0 0 0 0 0 0 2 2 0 0 1 0 0 0 16 1 1918.8405 A0A024R784;O15164;B4DYZ9 A0A024R784 708 723 TRIM24 Transcription intermediary factor 1-alpha yes no 3 0.030083 21.841 1 0.57744 0.75829 NaN 1 Median 0.57744 0.75829 NaN 1 0 Median NaN NaN NaN 0 0 Median 1762700 1152700 610050 1762700 1152700 610050 0 0 0 9514 171 9774 34229 51565 51565 1 QESGSEIHVEVK VLKKIIKEQPQPSGKQESGSEIHVEVKAQS SGKQESGSEIHVEVKAQSLVISPPAPSPRK K Q E V K A 0 0 0 0 0 1 3 1 1 1 0 1 0 0 0 2 0 0 0 2 0 0 12 0 1340.6572 P46013;Q70L73 P46013 561 572 MKI67 Antigen KI-67 no no 2;3 6.5833E-16 141.1 8 5 1.0005 1.2697 14.698 12 Median 0.95115 1.2403 4.5508 8 0 Median 1.0417 1.6364 4.7887 4 0 Median 671730000 334130000 337600000 549250000 273070000 276170000 122490000 61056000 61431000 9515 1342;1604 9775 34230;34231;34232;34233;34234;34235;34236;34237;34238;34239;34240;34241;34242 51566;51567;51568;51569;51570;51571;51572;51573;51574;51575;51576;51577;51578;51579;51580;51581;51582;51583;51584;51585;51586;51587 51577 21 QEVTCLCPSPDGLHLAVGYEDGSIR DLRKGEKILILQGLKQEVTCLCPSPDGLHL DGLHLAVGYEDGSIRIFSLLSGEGNVTFNG K Q E I R I 1 1 0 2 2 1 2 3 1 1 3 0 0 0 2 2 1 0 1 2 0 0 25 0 2772.2847 Q5TDG3;Q9UNX4 Q5TDG3 66 90 WDR3 WD repeat-containing protein 3 yes no 3 1.2905E-40 156.23 4 0.83851 1.142 9.6383 3 Median 0.83851 1.142 9.6383 3 0 Median NaN NaN NaN 0 0 Median 85354000 54334000 31020000 85354000 54334000 31020000 0 0 0 9516 1576 9776 34243;34244;34245;34246 51588;51589;51590;51591 51588 4 QEYDESGPSIVHR VLASLSTFQQMWISKQEYDESGPSIVHRKC SKQEYDESGPSIVHRKCF____________ K Q E H R K 0 1 0 1 0 1 2 1 1 1 0 0 0 0 1 2 0 0 1 1 0 0 13 0 1515.6954 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;Q96DE1;Q96FU6;Q6S8J3;A5A3E0;P0CG38;P0CG39;L0R5C4;Q9BYX7;P63261;B4E3A4;B4DVQ0;V9HVZ7 Q53GK6 360 372 PS1TP5BP1;ACTB;ACTG1;POTEE;POTEF;POTEI;POTEJ;POTEM;POTEKP;HEL-176 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2;3 1.9187E-52 227.94 8 4 0.71404 0.98501 81.456 12 Median 0.68868 0.94897 9.2132 8 0 Median 2.9719 4.8328 3.6024 4 0 Median 4073600000 2318200000 1755300000 3706800000 2242700000 1464100000 366770000 75564000 291210000 9517 1388;1420;1859 9777 34247;34248;34249;34250;34251;34252;34253;34254;34255;34256;34257;34258 51592;51593;51594;51595;51596;51597;51598;51599;51600;51601;51602;51603;51604;51605;51606;51607;51608;51609;51610;51611;51612;51613 51596 22 QEYDESGPSIVHRK VLASLSTFQQMWISKQEYDESGPSIVHRKC KQEYDESGPSIVHRKCF_____________ K Q E R K C 0 1 0 1 0 1 2 1 1 1 0 1 0 0 1 2 0 0 1 1 0 0 14 1 1643.7903 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;Q96DE1;Q96FU6;Q6S8J3;A5A3E0;P0CG38;P0CG39;L0R5C4;Q9BYX7;P63261;B4E3A4;B4DVQ0;V9HVZ7 Q53GK6 360 373 PS1TP5BP1;ACTB;ACTG1;POTEE;POTEF;POTEI;POTEJ;POTEM;POTEKP;HEL-176 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2;3;4 3.5041E-87 267.07 9 1 0.76096 1.0059 46.056 10 Median 0.75859 0.99955 5.1147 9 0 Median 2.8374 4.3182 NaN 1 0 Median 2816600000 1599100000 1217500000 2811700000 1597800000 1213900000 4894400 1261100 3633300 9518 1388;1420;1859 9778 34259;34260;34261;34262;34263;34264;34265;34266;34267;34268 51614;51615;51616;51617;51618;51619;51620;51621;51622;51623;51624;51625;51626;51627;51628 51619 15 QEYEQLIAK VAPGKDLTKTLNDMRQEYEQLIAKNRKDIE TLNDMRQEYEQLIAKNRKDIENQYETQITQ R Q E A K N 1 0 0 0 0 2 2 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0 9 0 1120.5764 CON__P35527;P35527;K7EQQ3 CON__P35527 328 336 KRT9 Keratin, type I cytoskeletal 9 yes no 2 0.00083063 85.38 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16659000 16659000 0 0 0 0 16659000 16659000 0 + 9519 963 9779 34269;34270 51629;51630;51631;51632 51630 4 QEYVDYSESAK DKHGKPTDSTPATWKQEYVDYSESAKKEVV ATWKQEYVDYSESAKKEVVAEVVKAPQVVA K Q E A K K 1 0 0 1 0 1 2 0 0 0 0 1 0 0 0 2 0 0 2 1 0 0 11 0 1317.5725 O60832 O60832 414 424 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2 0.00014055 126.39 3 0.74928 0.95922 11.009 3 Median 0.74928 0.95922 11.009 3 0 Median NaN NaN NaN 0 0 Median 37314000 21177000 16137000 37314000 21177000 16137000 0 0 0 9520 1193 9780 34271;34272;34273 51633;51634;51635;51636 51635 4 QEYVDYSESAKK DKHGKPTDSTPATWKQEYVDYSESAKKEVV TWKQEYVDYSESAKKEVVAEVVKAPQVVAE K Q E K K E 1 0 0 1 0 1 2 0 0 0 0 2 0 0 0 2 0 0 2 1 0 0 12 1 1445.6674 O60832 O60832 414 425 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2;3 0.00010353 128.51 3 0.77299 0.9436 16.541 3 Median 0.77299 0.9436 16.541 3 0 Median NaN NaN NaN 0 0 Median 32012000 18245000 13767000 32012000 18245000 13767000 0 0 0 9521 1193 9781 34274;34275;34276 51637;51638;51639;51640 51637 4 QFAGYSEEVLDVR HNLLLYEARSLRLQKQFAGYSEEVLDVRFL QKQFAGYSEEVLDVRFLGPEDSHVVVASNS K Q F V R F 1 1 0 1 0 1 2 1 0 0 1 0 0 1 0 1 0 0 1 2 0 0 13 0 1511.7256 Q12788;J3KNP2;A0JLS5 Q12788 329 341 TBL3 Transducin beta-like protein 3 no no 2 1.5028E-12 124.42 4 1 0.85135 1.1509 29.527 5 Median 0.88345 1.1913 13.135 4 0 Median 0.44807 0.63264 NaN 1 0 Median 49425000 28052000 21373000 41743000 22354000 19389000 7682000 5698500 1983500 9522 1456 9782 34277;34278;34279;34280;34281 51641;51642;51643;51644;51645;51646;51647;51648 51646 8 QFEELTLGEFLK HKKHSSGCAFLSVKKQFEELTLGEFLKLDT VKKQFEELTLGEFLKLDTERAKNKIERALL K Q F L K L 0 0 0 0 0 1 3 1 0 0 3 1 0 2 0 0 1 0 0 0 0 0 12 0 1452.75 B7Z7B9;E7CU85;A0A0B4J1S3;O15392;A3E0Z5;H3BLT4;K7EMW2 B7Z7B9 92 103 BIRC5 Baculoviral IAP repeat-containing protein 5 yes no 2 2.3597E-21 164.66 4 2 0.90234 1.1467 23.685 6 Median 0.966 1.228 8.5809 4 0 Median 0.51002 0.78967 5.86 2 0 Median 81252000 48094000 33157000 35469000 17981000 17489000 45782000 30113000 15669000 9523 413 9783 34282;34283;34284;34285;34286;34287 51649;51650;51651;51652;51653;51654;51655;51656;51657;51658;51659;51660;51661 51655 13 QFESLPATHIR QQRHQLKHRELFLSRQFESLPATHIRGKCS FLSRQFESLPATHIRGKCSVTLLNETDILS R Q F I R G 1 1 0 0 0 1 1 0 1 1 1 0 0 1 1 1 1 0 0 0 0 0 11 0 1297.6779 A0A024R534;O94776 A0A024R534 93 103 MTA2 Metastasis-associated protein MTA2 yes no 3 0.0076492 69.216 2 0.70786 0.97157 17.391 2 Median 0.70786 0.97157 17.391 2 0 Median NaN NaN NaN 0 0 Median 14211000 8761500 5449400 14211000 8761500 5449400 0 0 0 9524 133 9784 34288;34289 51662;51663;51664 51663 3 QFGFIVLTTSAGIMDHEEAR LKDLEKWQNNLLPSRQFGFIVLTTSAGIMD VLTTSAGIMDHEEARRKHTGGKILGFFF__ R Q F A R R 2 1 0 1 0 1 2 2 1 2 1 0 1 2 0 1 2 0 0 1 0 0 20 0 2221.0838 B2R4W8;P62244;A8K7H3 B2R4W8 98 117 hCG_1994130;RPS15A 40S ribosomal protein S15a yes no 3 9.7704E-10 77.795 7 1 0.8722 1.1614 29.444 8 Median 0.88839 1.1837 8.7864 7 0 Median 0.32151 0.52859 NaN 1 0 Median 154740000 99541000 55202000 90463000 48813000 41649000 64281000 50728000 13552000 9525 688 9785;9786 34290;34291;34292;34293;34294;34295;34296;34297 51665;51666;51667;51668;51669;51670;51671;51672;51673;51674 51666 242 10 QFGIDGESFELK PSVDVLKATALPLLKQFGIDGESFELKIVR LLKQFGIDGESFELKIVRRGMPPGGGGEVV K Q F L K I 0 0 0 1 0 1 2 2 0 1 1 1 0 2 0 1 0 0 0 0 0 0 12 0 1368.6561 Q9Y2P8 Q9Y2P8 142 153 RCL1 RNA 3-terminal phosphate cyclase-like protein yes yes 2 4.9637E-05 132.32 3 1.0947 1.3554 7.2966 3 Median 1.0947 1.3554 7.2966 3 0 Median NaN NaN NaN 0 0 Median 29197000 12945000 16252000 29197000 12945000 16252000 0 0 0 9526 1806 9787 34298;34299;34300 51675;51676;51677;51678;51679 51679 5 QFIAAQGSSR VRGVLRRGMTVEGLKQFIAAQGSSRSVVNM VEGLKQFIAAQGSSRSVVNMEWDKIWAFNK K Q F S R S 2 1 0 0 0 2 0 1 0 1 0 0 0 1 0 2 0 0 0 0 0 0 10 0 1063.5411 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 473 482 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.000811 85.676 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7497100 7497100 0 7497100 7497100 0 0 0 0 9527 1242 9788 34301 51680 51680 1 QFLEVELDQAR AEENRGLGERANLGRQFLEVELDQAREKYV NLGRQFLEVELDQAREKYVQELAAVRADAE R Q F A R E 1 1 0 1 0 2 2 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 11 0 1346.683 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q7Z757;Q96HN5;H0YFY6;K4DIE0;Q4LE64;Q14980 Q4LE64 1463 1473 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 4.0944E-06 109.79 4 0.56579 0.77969 18.516 2 Median 0.56579 0.77969 18.516 2 0 Median NaN NaN NaN 0 0 Median 19982000 16102000 3880000 19982000 16102000 3880000 0 0 0 9528 148;1499 9789 34302;34303;34304;34305 51681;51682;51683;51684;51685;51686 51686 6 QFLPFLQR IHRVADISGDTQKAKQFLPFLQRAGRSEAV GDTQKAKQFLPFLQRAGRSEAVVEYVFSGS K Q F Q R A 0 1 0 0 0 2 0 0 0 0 2 0 0 2 1 0 0 0 0 0 0 0 8 0 1047.5866 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B4E299;B3KU67;I6TRR8;H7C597 A0A140VK49 516 523 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.0057507 110.34 3 0.5188 0.7144 13.931 2 Median 0.5188 0.7144 13.931 2 0 Median NaN NaN NaN 0 0 Median 9509200 6054400 3454800 9509200 6054400 3454800 0 0 0 9529 508 9790 34306;34307;34308 51687;51688;51689;51690;51691 51690 5 QFQDAGHFDAENIK AAHQDRIDGITIQARQFQDAGHFDAENIKK RQFQDAGHFDAENIKKKQEALVARYEALKE R Q F I K K 2 0 1 2 0 2 1 1 1 1 0 1 0 2 0 0 0 0 0 0 0 0 14 0 1618.7376 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 743 756 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 3 0.0059912 31.215 1 0.94654 1.2024 NaN 1 Median 0.94654 1.2024 NaN 1 0 Median NaN NaN NaN 0 0 Median 12731000 6925400 5805200 12731000 6925400 5805200 0 0 0 9530 1476 9791 34309 51692;51693 51692 2 QFQLDSLEAALQK LEGQLDKLKKEKQQRQFQLDSLEAALQKQK QRQFQLDSLEAALQKQKQKVENEKTEGTNL R Q F Q K Q 2 0 0 1 0 3 1 0 0 0 3 1 0 1 0 1 0 0 0 0 0 0 13 0 1489.7777 P49454 P49454 38 50 CENPF Centromere protein F yes yes 2 0.00017593 100.88 3 0.4809 0.61361 33.36 3 Median 0.4809 0.61361 33.36 3 0 Median NaN NaN NaN 0 0 Median 7996400 4996700 2999700 7996400 4996700 2999700 0 0 0 9531 1351 9792 34310;34311;34312 51694;51695;51696 51696 3 QFSQYIK YMRYLMEEDEDAYKKQFSQYIKNSVTPDMM EDEDAYKKQFSQYIKNSVTPDMMEEMYKKA K Q F I K N 0 0 0 0 0 2 0 0 0 1 0 1 0 1 0 1 0 0 1 0 0 0 7 0 912.47052 A2RUM7;P46777;B3KTM6;Q59GX9 A2RUM7 222 228 RPL5 60S ribosomal protein L5 yes no 2 0.0039199 128.48 4 2 0.77282 1.0412 4.2783 6 Median 0.79652 1.0501 5.4376 4 0 Median 0.65025 1.0412 0.22002 2 0 Median 812990000 451520000 361470000 703550000 384860000 318680000 109440000 66659000 42783000 9532 540 9793 34313;34314;34315;34316;34317;34318 51697;51698;51699;51700;51701;51702;51703;51704;51705;51706;51707 51698 11 QFSSASSQQGQEEKEEDLK ITSIRSELIPYLVRKQFSSASSQQGQEEKE ASSQQGQEEKEEDLKKKELKSLDIYSFIKE K Q F L K K 1 0 0 1 0 4 4 1 0 0 1 2 0 1 0 4 0 0 0 0 0 0 19 1 2153.9713 H0Y580;Q9HA31;Q9NR50 H0Y580 57 75 EIF2B3 Translation initiation factor eIF-2B subunit gamma yes no 3 0.0099124 34.748 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2907100 2907100 0 2907100 2907100 0 0 0 0 9533 1090 9794 34319 51708 51708 1 QFSSSYLSR ______________________________ ______________________________ R Q F S R S 0 1 0 0 0 1 0 0 0 0 1 0 0 1 0 4 0 0 1 0 0 0 9 0 1073.5142 CON__P35527;P35527 CON__P35527 5 13 KRT9 Keratin, type I cytoskeletal 9 yes no 2 0.025551 51.949 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11663000 11663000 0 11663000 11663000 0 0 0 0 + 9534 963 9795 34320 51709 51709 1 QFSVPPAPTRPSCPAVAEIPLR NDMEVELPAAANSRKQFSVPPAPTRPSCPA PTRPSCPAVAEIPLRMVSEEMEEQVHSIRG K Q F L R M 3 2 0 0 1 1 1 0 0 1 1 0 0 1 6 2 1 0 0 2 0 0 22 1 2389.2576 A8K3S3;A0A140VKF1;Q99661;B7Z7M6;Q5JR89 A8K3S3 142 163 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 3 0.00025835 60.938 2 0.75861 1.0194 3.9351 2 Median 0.75861 1.0194 3.9351 2 0 Median NaN NaN NaN 0 0 Median 15345000 8157300 7187800 15345000 8157300 7187800 0 0 0 9535 514 9796 34321;34322 51710;51711;51712;51713;51714 51711 5 QGANINEIR ELTIPNNLIGCIIGRQGANINEIRQMSGAQ GCIIGRQGANINEIRQMSGAQIKIANPVEG R Q G I R Q 1 1 2 0 0 1 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 9 0 1013.5254 Q53SS8;Q15365 Q53SS8 298 306 PCBP1 Poly(rC)-binding protein 1 yes no 2 0.00035431 104.06 4 2 2.7534 3.8121 147.89 3 Median 0.23376 0.31837 NaN 1 0 Median 2.869 4.1106 10.662 2 0 Median 64569000 49020000 15549000 48472000 45570000 2901800 16097000 3449800 12647000 9536 1509 9797 34323;34324;34325;34326;34327;34328 51715;51716;51717;51718;51719;51720 51717 6 QGDFESDHSGYVRPVPVPR QLNNWAVYRLSKFTRQGDFESDHSGYVRPV ESDHSGYVRPVPVPRSLNSDISYFGVGGKQ R Q G P R S 0 2 0 2 0 1 1 2 1 0 0 0 0 1 3 2 0 0 1 3 0 0 19 1 2141.029 A6NHR9 A6NHR9 208 226 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 4 0.045631 16.615 1 0.83221 1.1141 NaN 1 Median 0.83221 1.1141 NaN 1 0 Median NaN NaN NaN 0 0 Median 16759000 8519900 8238700 16759000 8519900 8238700 0 0 0 9537 568 9798 34329 51721 51721 0 QGEGSSGVSSLLLHPEPVPGPEK LEEIKSKKMKEKSKKQGEGSSGVSSLLLHP SSLLLHPEPVPGPEKENVRTVVRTVTLSTK K Q G E K E 0 0 0 0 0 1 3 4 1 0 3 1 0 0 4 4 0 0 0 2 0 0 23 0 2300.1648 B4DLG2;O75152;E9PQ61;E9PBY7;Q0D2N5 B4DLG2 178 200 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 3 0.010595 40.994 1 0.76131 1.0014 NaN 1 Median 0.76131 1.0014 NaN 1 0 Median NaN NaN NaN 0 0 Median 3111400 1287600 1823800 3111400 1287600 1823800 0 0 0 9538 826 9799 34330 51722;51723 51722 2 QGFVPAAYVK NSTNKDWWKVEVNDRQGFVPAAYVKKLDPA EVNDRQGFVPAAYVKKLDPAQSASRENLLE R Q G V K K 2 0 0 0 0 1 0 1 0 0 0 1 0 1 1 0 0 0 1 2 0 0 10 0 1078.5811 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8;Q9UG16 Q13813 1013 1022 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.013416 51.066 1 0.6508 0.8237 NaN 1 Median 0.6508 0.8237 NaN 1 0 Median NaN NaN NaN 0 0 Median 11008000 5997100 5011400 11008000 5997100 5011400 0 0 0 9539 1476 9800 34331 51724 51724 1 QGGGGGGGSVPGIER EILSNALKRGEIIAKQGGGGGGGSVPGIER QGGGGGGGSVPGIERMGPGIDRLGGAGMER K Q G E R M 0 1 0 0 0 1 1 8 0 1 0 0 0 0 1 1 0 0 0 1 0 0 15 0 1283.6218 P52272;A0A087X0X3;Q59ES8;Q7KYM9;M0R019;B4DEG4;M0R2T0 P52272 389 403 HNRNPM;ORF Heterogeneous nuclear ribonucleoprotein M yes no 2 7.8688E-15 150.51 3 2 0.33998 0.45559 114.61 5 Median 0.3241 0.43145 4.4707 3 0 Median 2.7035 3.5178 0.9835 2 0 Median 85581000 58792000 26790000 75990000 55818000 20172000 9591600 2973700 6617900 9540 1363 9801 34332;34333;34334;34335;34336 51725;51726;51727;51728;51729;51730;51731;51732 51728 7 QGGPTYYIDTNALR DDGSTLMEIDGDKGKQGGPTYYIDTNALRV KQGGPTYYIDTNALRVPRENMEAISPLKNG K Q G L R V 1 1 1 1 0 1 0 2 0 1 1 0 0 0 1 0 2 0 2 0 0 0 14 0 1567.7631 Q6FI97;Q53FS0;O96019;H7C5S0;C9JQT2 Q6FI97 63 76 BAF53A;ACTL6A Actin-like protein 6A yes no 2 4.7386E-05 83.617 3 2 0.94063 1.3548 31.208 3 Median 0.59719 0.80237 NaN 1 0 Median 0.97595 1.3767 2.2647 2 0 Median 37048000 18698000 18349000 18545000 9393700 9151400 18502000 9304400 9198100 9541 1227 9802 34337;34338;34339;34340;34341 51733;51734;51735;51736;51737;51738;51739 51735 7 QGHEAYVEMAR CPFVPQMGDEVYYFRQGHEAYVEMARKNKI YYFRQGHEAYVEMARKNKIYSINPKKQPWH R Q G A R K 2 1 0 0 0 1 2 1 1 0 0 0 1 0 0 0 0 0 1 1 0 0 11 0 1289.5823 Q8WWQ0 Q8WWQ0 969 979 PHIP PH-interacting protein yes yes 2 0.0063359 47.559 1 0.78195 0.99389 NaN 1 Median NaN NaN NaN 0 0 Median 0.78195 0.99389 NaN 1 0 Median 4352700 2188700 2164000 0 0 0 4352700 2188700 2164000 9542 1668 9803 34342 51740 51740 743 1 QGIIAVTQPR TTQIPQYLYEGGISRQGIIAVTQPRRVAAI GGISRQGIIAVTQPRRVAAISLATRVSDEK R Q G P R R 1 1 0 0 0 2 0 1 0 2 0 0 0 0 1 0 1 0 0 1 0 0 10 0 1081.6244 B4DIS6;Q9H6R0 B4DIS6 178 187 DHX33 Putative ATP-dependent RNA helicase DHX33 yes no 2 0.0041765 72.243 2 1.1623 1.6051 NaN 1 Median 1.1623 1.6051 NaN 1 0 Median NaN NaN NaN 0 0 Median 6904300 4969300 1935000 6904300 4969300 1935000 0 0 0 9543 811 9804 34343;34344 51741;51742 51742 2 QGLFPNNYVTK KEDPSGWWTGRLRGKQGLFPNNYVTKI___ LRGKQGLFPNNYVTKI______________ K Q G T K I 0 0 2 0 0 1 0 1 0 0 1 1 0 1 1 0 1 0 1 1 0 0 11 0 1279.6561 Q4KMR3;Q12965 Q4KMR3 1097 1107 MYO1E Unconventional myosin-Ie yes no 2 0.026428 46.462 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5919300 5919300 0 5919300 5919300 0 0 0 0 9544 1459 9805 34345 51743 51743 1 QGLQSQIAQVLEGR TEKFQLAVEALEQEKQGLQSQIAQVLEGRQ KQGLQSQIAQVLEGRQQLAHLKMSLSLEVA K Q G G R Q 1 1 0 0 0 4 1 2 0 1 2 0 0 0 0 1 0 0 0 1 0 0 14 0 1525.8213 D3DVC4;P48681;Q05BW3;A5PKT9 D3DVC4 272 285 NES Nestin yes no 2 0.010236 46.063 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2005800 2005800 0 2005800 2005800 0 0 0 0 9545 986 9806 34346 51744 51744 1 QGNLSSQVPLK QALTEIQEFISFISKQGNLSSQVPLKRLLN FISKQGNLSSQVPLKRLLNTWTNRYPDAKM K Q G L K R 0 0 1 0 0 2 0 1 0 0 2 1 0 0 1 2 0 0 0 1 0 0 11 0 1169.6404 P78527 P78527 3148 3158 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0042426 94.409 2 0.46707 0.58312 20.126 2 Median 0.46707 0.58312 20.126 2 0 Median NaN NaN NaN 0 0 Median 12097000 8215900 3881200 12097000 8215900 3881200 0 0 0 9546 1427 9807 34347;34348 51745;51746;51747 51745 3 QGNLSSQVPLKR QALTEIQEFISFISKQGNLSSQVPLKRLLN ISKQGNLSSQVPLKRLLNTWTNRYPDAKMD K Q G K R L 0 1 1 0 0 2 0 1 0 0 2 1 0 0 1 2 0 0 0 1 0 0 12 1 1325.7415 P78527 P78527 3148 3159 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.016526 55.98 1 0.48697 0.65375 NaN 1 Median 0.48697 0.65375 NaN 1 0 Median NaN NaN NaN 0 0 Median 4590400 2401400 2189100 4590400 2401400 2189100 0 0 0 9547 1427 9808 34349 51748 51748 1 QGPEESGLGDGTGPK HQHKGGTLQRSTSFRQGPEESGLGDGTGPK QGPEESGLGDGTGPKLSALECLEGMAAGLY R Q G P K L 0 0 0 1 0 1 2 5 0 0 1 1 0 0 2 1 1 0 0 0 0 0 15 0 1427.6529 A0A0D9SFK2;A0A024QZ63;Q92614;B4DYM1;B4E0T8 A0A0D9SFK2 730 744 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 2 8.277E-16 165.35 4 0.52679 0.67615 21.048 3 Median 0.52679 0.67615 21.048 3 0 Median NaN NaN NaN 0 0 Median 8856500 6098500 2758000 8856500 6098500 2758000 0 0 0 9548 6 9809 34350;34351;34352;34353 51749;51750;51751;51752;51753 51749 5 QGQGQLVTCSGAFK NLGPIVDMCVVDLERQGQGQLVTCSGAFKE RQGQGQLVTCSGAFKEGSLRIIRNGIGIHE R Q G F K E 1 0 0 0 1 3 0 3 0 0 1 1 0 1 0 1 1 0 0 1 0 0 14 0 1479.714 Q16531;B4DSA8;F5GY55;B7Z2A1;B7Z859 Q16531 370 383 DDB1 DNA damage-binding protein 1 yes no 2 4.7278E-21 176.8 6 1 0.88708 1.1436 11.404 4 Median 0.88708 1.1436 11.404 4 0 Median NaN NaN NaN 0 0 Median 81326000 46159000 35166000 81326000 46159000 35166000 0 0 0 9549 1520 9810 34354;34355;34356;34357;34358;34359;34360 51754;51755;51756;51757;51758;51759;51760;51761;51762 51755 8 QGQIITCPAVCNFQTGEYVVVHDNK YKVSDQKPLGSWSVKQGQIITCPAVCNFQT CNFQTGEYVVVHDNKVLRIWNNEDVNLDKV K Q G N K V 1 0 2 1 2 3 1 2 1 2 0 1 0 1 1 0 2 0 1 4 0 0 25 0 2876.3585 Q9H8H0;J3QLQ6 Q9H8H0 61 85 NOL11 Nucleolar protein 11 yes no 3 6.4047E-23 130.19 4 0.88308 1.0834 11.26 4 Median 0.88308 1.0834 11.26 4 0 Median NaN NaN NaN 0 0 Median 103870000 52455000 51414000 103870000 52455000 51414000 0 0 0 9550 1743 9811 34361;34362;34363;34364 51763;51764;51765;51766;51767;51768;51769;51770;51771;51772;51773 51769 11 QGTGLQGQAVFK YKAPLQGDHNHLFIRQGTGLQGQAVFKTKL FIRQGTGLQGQAVFKTKLTFRPHSTDSATH R Q G F K T 1 0 0 0 0 3 0 3 0 0 1 1 0 1 0 0 1 0 0 1 0 0 12 0 1232.6513 B4DNM0;Q8WVC0 B4DNM0 453 464 LEO1 RNA polymerase-associated protein LEO1 yes no 2 3.7682E-05 105.4 4 1 0.68381 0.85722 2.4445 4 Median 0.68381 0.85722 2.4445 4 0 Median NaN NaN NaN 0 0 Median 58294000 31939000 26355000 52784000 31939000 20846000 5509500 0 5509500 9551 838 9812 34365;34366;34367;34368;34369 51774;51775;51776;51777;51778;51779;51780;51781;51782 51778 9 QGTPLIAFSLLPHEQK LHVSEVPVSVVECFRQGTPLIAFSLLPHEQ GTPLIAFSLLPHEQKMSVLNMVVRRDPGNT R Q G Q K M 1 0 0 0 0 2 1 1 1 1 3 1 0 1 2 1 1 0 0 0 0 0 16 0 1777.9727 Q2NL82;I3L4E8 Q2NL82 575 590 TSR1 Pre-rRNA-processing protein TSR1 homolog yes no 3 1.6956E-07 78.673 2 1 0.73032 0.9157 31.776 3 Median 0.78918 1.006 13.302 2 0 Median 0.40604 0.59469 NaN 1 0 Median 26412000 15080000 11332000 20794000 11415000 9379200 5618000 3665300 1952700 9552 1529 9813 34370;34371;34372 51783;51784;51785 51784 3 QGTQYTFSSIER GTTTTRSFDFEIETKQGTQYTFSSIEREEY ETKQGTQYTFSSIEREEYGKLFDFVNAKKL K Q G E R E 0 1 0 0 0 2 1 1 0 1 0 0 0 1 0 2 2 0 1 0 0 0 12 0 1415.6681 A0A024R4Z6;Q08945 A0A024R4Z6 397 408 SSRP1 FACT complex subunit SSRP1 yes no 2 0.008759 58.172 1 2 0.64554 0.85346 NaN 1 Median 0.64554 0.85346 NaN 1 0 Median NaN NaN NaN 0 0 Median 6588300 3395100 3193200 6588300 3395100 3193200 0 0 0 9553 132 9814 34373;34374;34375 51786;51787;51788 51787 3 QGTQYTFSSIEREEYGK GTTTTRSFDFEIETKQGTQYTFSSIEREEY TQYTFSSIEREEYGKLFDFVNAKKLNIKNR K Q G G K L 0 1 0 0 0 2 3 2 0 1 0 1 0 1 0 2 2 0 2 0 0 0 17 1 2021.933 A0A024R4Z6;Q08945 A0A024R4Z6 397 413 SSRP1 FACT complex subunit SSRP1 yes no 2;3 1.2619E-36 161.04 6 2 0.75774 1.0402 10.649 7 Median 0.7832 1.0253 4.3563 5 0 Median 0.72741 1.2665 2.3025 2 0 Median 560140000 315070000 245070000 347010000 190810000 156200000 213130000 124260000 88871000 9554 132 9815 34376;34377;34378;34379;34380;34381;34382;34383 51789;51790;51791;51792;51793;51794;51795;51796;51797;51798;51799;51800;51801;51802;51803;51804;51805 51799 17 QGVDADINGLR LDDFRIKFEMEQNLRQGVDADINGLRQVLD QNLRQGVDADINGLRQVLDNLTMEKSDLEM R Q G L R Q 1 1 1 2 0 1 0 2 0 1 1 0 0 0 0 0 0 0 0 1 0 0 11 0 1156.5836 CON__P35527;P35527;K7EQQ3 CON__P35527 251 261 KRT9 Keratin, type I cytoskeletal 9 yes no 2 0.0036197 90.15 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 92274000 92274000 0 92274000 92274000 0 0 0 0 + 9555 963 9816 34384;34385 51806;51807 51807 2 QGVDIEAARK EEEAMEELLQNEVNRQGVDIEAARKEEERI NEVNRQGVDIEAARKEEERIMLRDARQWLN R Q G R K E 2 1 0 1 0 1 1 1 0 1 0 1 0 0 0 0 0 0 0 1 0 0 10 1 1085.5829 B2RAH5;O14974;F8VZN8;A0A024RBF1;F8VW28;H0YHL8 B2RAH5 162 171 PPP1R12A Protein phosphatase 1 regulatory subunit;Protein phosphatase 1 regulatory subunit 12A yes no 2 0.011069 65.252 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 136260000 136260000 0 136260000 136260000 0 0 0 0 9556 723 9817 34386 51808 51808 1 QGVLTHGR VRISGGNDKQGFPMKQGVLTHGRVRLLLSK KQGFPMKQGVLTHGRVRLLLSKGHSCYRPR K Q G G R V 0 1 0 0 0 1 0 2 1 0 1 0 0 0 0 0 1 0 0 1 0 0 8 0 866.47225 Q96DV6;A2A3R6;P62753;A2A3R5 Q96DV6 65 72 RPS6 40S ribosomal protein S6 yes no 2 0.00010333 129.55 2 0.88286 1.1881 8.8552 2 Median 0.88286 1.1881 8.8552 2 0 Median NaN NaN NaN 0 0 Median 31493000 16729000 14764000 31493000 16729000 14764000 0 0 0 9557 535 9818 34387;34388 51809;51810 51810 2 QGVQVQVSTSNISSLEGAR IRTGYQAKQVRRWRRQGVQVQVSTSNISSL VQVSTSNISSLEGARGLIAEAAQLGPVGGV R Q G A R G 1 1 1 0 0 3 1 2 0 1 1 0 0 0 0 4 1 0 0 3 0 0 19 0 1959.0021 A0A0U1RQF0;P49327 A0A0U1RQF0 1933 1951 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 9.524E-62 206.66 3 0.80394 1.1439 18.41 3 Median 0.80394 1.1439 18.41 3 0 Median NaN NaN NaN 0 0 Median 10803000 5727300 5075900 10803000 5727300 5075900 0 0 0 9558 486 9819 34389;34390;34391 51811;51812;51813;51814 51811 4 QGYVIYR PTRPDKARRLGYKAKQGYVIYRIRVRRGGR RRLGYKAKQGYVIYRIRVRRGGRKRPVPKG K Q G Y R I 0 1 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 2 1 0 0 7 0 897.47085 A0A024R2Q4;P61313;E7EQV9;B4DLP4;E7ENU7;E7EX53;B4DEN1 A0A024R2Q4 57 63 RPL15 Ribosomal protein L15;60S ribosomal protein L15 no no 2 0.0043021 153.61 4 0.73797 1.013 3.1868 4 Median 0.73797 1.013 3.1868 4 0 Median NaN NaN NaN 0 0 Median 796150000 455240000 340910000 796150000 455240000 340910000 0 0 0 9559 92 9820 34392;34393;34394;34395 51815;51816;51817;51818;51819;51820;51821;51822 51818 8 QHAAVLEEGVLDPK GWTKDDDVPLDWRMKQHAAVLEEGVLDPKS KQHAAVLEEGVLDPKSTIVAIFPSPMLYAG K Q H P K S 2 0 0 1 0 1 2 1 1 0 2 1 0 0 1 0 0 0 0 2 0 0 14 0 1504.7886 Q5TB52;B4DWB5;O95340;Q9UIR2 Q5TB52 461 474 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes no 3 0.00013917 37.897 1 0.39428 0.50279 NaN 1 Median 0.39428 0.50279 NaN 1 0 Median NaN NaN NaN 0 0 Median 5385300 3639900 1745300 5385300 3639900 1745300 0 0 0 9560 865 9821 34396 51823 51823 1 QHFPATPLLDYALEVEK NNPDMRVQILKDYVRQHFPATPLLDYALEV FPATPLLDYALEVEKITTSKKPNLILNVDG R Q H E K I 2 0 0 1 0 1 2 0 1 0 3 1 0 1 2 0 1 0 1 1 0 0 17 0 1970.0149 A0A024R1Y2;A0A024R1T9;Q4LE36;P53396;Q8N9C4 A0A024R1Y2 986 1002 ACLY;ACLY variant protein ATP-citrate synthase yes no 3 0.020164 64.298 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 734930 0 734930 734930 0 734930 0 0 0 9561 69 9822 34397 51824 51824 1 QHSSGQENTVK SFQLPLPRIKESETRQHSSGQENTVKNPTH SETRQHSSGQENTVKNPTHVPKENFRKHSQ R Q H V K N 0 0 1 0 0 2 1 1 1 0 0 1 0 0 0 2 1 0 0 1 0 0 11 0 1213.5687 Q13129;Q59GL0 Q13129 1730 1740 RLF Zinc finger protein Rlf yes no 2 0.043632 63.534 1 0.52589 0.66983 NaN 1 Median 0.52589 0.66983 NaN 1 0 Median NaN NaN NaN 0 0 Median 18906000 11085000 7820800 18906000 11085000 7820800 0 0 0 9562 1463 9823 34398 51825 51825 1 QHSVVPSQIFELEDGTSSYK NVKLFGKRLNVCVSKQHSVVPSQIFELEDG PSQIFELEDGTSSYKDFAMSKNNRFTSAGQ K Q H Y K D 0 0 0 1 0 2 2 1 1 1 1 1 0 1 1 4 1 0 1 2 0 0 20 0 2250.0804 B7WPG3;C9IYN3;A8K894;D6W592;A0A0S2Z6K1;A0A0S2Z5U3;Q8WVV9;H7C464 B7WPG3 375 394 HNRNPLL;HNRPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 3 0.0031412 29.384 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2301600 2301600 0 2301600 2301600 0 0 0 0 9563 483 9824 34399 51826 51826 1 QHVTEAFQFHF VMGISSLLPSLEAWKQHVTEAFQFHF____ EAWKQHVTEAFQFHF_______________ K Q H H F - 1 0 0 0 0 2 1 0 2 0 0 0 0 3 0 0 1 0 0 1 0 0 11 0 1389.6466 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2;Q8N5M8;Q9UMY3;Q96RV8 O43175 523 533 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 2;3 0.0019363 110.41 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22192000 0 0 22192000 0 0 0 0 0 9564 1182 9825 34400;34401;34402;34403 51827;51828;51829;51830 51828 4 QIAEEDFYEK DDESGAGELTREELRQIAEEDFYEKLAASI REELRQIAEEDFYEKLAASIAPEIYGHEDV R Q I E K L 1 0 0 1 0 1 3 0 0 1 0 1 0 1 0 0 0 0 1 0 0 0 10 0 1270.5717 B2RBA6;A0A0S2Z4A5;P33993;B3KUD7;B4DDF5;C6EMX8 B2RBA6 326 335 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 2 0.00045457 104.01 3 0.30634 0.38892 NaN 1 Median 0.30634 0.38892 NaN 1 0 Median NaN NaN NaN 0 0 Median 7773000 5048800 2724200 7773000 5048800 2724200 0 0 0 9565 464 9826 34404;34405;34406 51831;51832;51833;51834 51833 4 QIALGTSK LMKLEVQATDREENKQIALGTSKLNYLDPR TDREENKQIALGTSKLNYLDPRITVAWCKK K Q I S K L 1 0 0 0 0 1 0 1 0 1 1 1 0 0 0 1 1 0 0 0 0 0 8 0 816.47052 P11387;B9EG90;Q9BVT2 P11387 713 720 TOP1 DNA topoisomerase 1 yes no 2 0.0060488 86.095 1 1 0.84451 1.1686 2.8937 2 Median 0.90713 1.145 NaN 1 0 Median 0.78622 1.1928 NaN 1 0 Median 93710000 49428000 44282000 80231000 41640000 38590000 13479000 7787400 5691600 9566 1255 9827 34407;34408 51835;51836;51837 51835 3 QICLVMLETLSQSPQGR ITIAGVPQSVTECVKQICLVMLETLSQSPQ CLVMLETLSQSPQGRVMTIPYQPMPASSPV K Q I G R V 0 1 0 0 1 3 1 1 0 1 3 0 1 0 1 2 1 0 0 1 0 0 17 0 1958.9918 Q53SS8;Q15365 Q53SS8 161 177 PCBP1 Poly(rC)-binding protein 1 yes no 2 1.3745E-06 133.88 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 956460 956460 0 956460 956460 0 0 0 0 9567 1509 9828 34409 51838 51838 1 QIDAPGDPFPLNPR NRLLHIVGYGDFQMKQIDAPGDPFPLNPRG KQIDAPGDPFPLNPRGIKPQKDPDMAMEIC K Q I P R G 1 1 1 2 0 1 0 1 0 1 1 0 0 1 4 0 0 0 0 0 0 0 14 0 1535.7732 Q2NL82;I3L1Q5 Q2NL82 301 314 TSR1 Pre-rRNA-processing protein TSR1 homolog yes no 2 4.0105E-05 106.62 1 0.80195 1.0994 NaN 1 Median 0.80195 1.0994 NaN 1 0 Median NaN NaN NaN 0 0 Median 3978400 2173100 1805300 3978400 2173100 1805300 0 0 0 9568 1529 9829 34410 51839 51839 1 QIDQFLVVAR MEMKVWDPDNPLTDRQIDQFLVVARAVGTF PLTDRQIDQFLVVARAVGTFARALDCSSSI R Q I A R A 1 1 0 1 0 2 0 0 0 1 1 0 0 1 0 0 0 0 0 2 0 0 10 0 1187.6663 A0A024R534;O94776;E7EQY4;E7EV10;Q9BTC8;E9PCS8;D6W5A2;Q53RX8;E7ESY4;Q13330;A0A024R6P5;Q59FW1;H0Y4T7;Q86TR6 A0A024R534 189 198 MTA2;MTA3;tmp_locus_6;MTA1 Metastasis-associated protein MTA2;Metastasis-associated protein MTA3;Metastasis-associated protein MTA1 no no 2 5.3907E-06 125.31 4 2 0.86733 1.1561 26.859 6 Median 0.82951 1.1032 10.488 4 0 Median 1.1922 1.7532 12.194 2 0 Median 104780000 56254000 48523000 76646000 42760000 33886000 28131000 13493000 14638000 9569 133;1014;1012 9830 34411;34412;34413;34414;34415;34416 51840;51841;51842;51843;51844;51845;51846;51847;51848 51844 9 QIEIQFAQGDR EDALHNLDRKWICGRQIEIQFAQGDRKTPN ICGRQIEIQFAQGDRKTPNQMKAKEGRNVY R Q I D R K 1 1 0 1 0 3 1 1 0 2 0 0 0 1 0 0 0 0 0 0 0 0 11 0 1303.6521 Q5JRI1;Q53GD7;A0A0S2Z504;O75494;Q8WXF0 Q5JRI1 80 90 SRSF10;SRSF12 Serine/arginine-rich splicing factor 10;Serine/arginine-rich splicing factor 12 yes no 2 0.00022019 132.01 3 0.50113 0.68662 25.549 2 Median 0.50113 0.68662 25.549 2 0 Median NaN NaN NaN 0 0 Median 22509000 16215000 6294100 22509000 16215000 6294100 0 0 0 9570 474 9831 34417;34418;34419 51849;51850;51851 51851 3 QIEIQFAQGDRK EDALHNLDRKWICGRQIEIQFAQGDRKTPN CGRQIEIQFAQGDRKTPNQMKAKEGRNVYS R Q I R K T 1 1 0 1 0 3 1 1 0 2 0 1 0 1 0 0 0 0 0 0 0 0 12 1 1431.747 Q5JRI1;Q53GD7;A0A0S2Z504;O75494;Q8WXF0 Q5JRI1 80 91 SRSF10;SRSF12 Serine/arginine-rich splicing factor 10;Serine/arginine-rich splicing factor 12 yes no 3 0.02585 25.234 1 0.37722 0.4941 NaN 1 Median 0.37722 0.4941 NaN 1 0 Median NaN NaN NaN 0 0 Median 23037000 16623000 6414300 23037000 16623000 6414300 0 0 0 9571 474 9832 34420 51852 51852 1 QIENVLR DGNNQLVIKGRFQQKQIENVLRRYIKEYVT IKGRFQQKQIENVLRRYIKEYVTCHTCRSP K Q I L R R 0 1 1 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 7 0 870.49232 Q6IBR8;B5BU01;P20042;Q96I16 Q6IBR8 266 272 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes no 2 0.049735 50.966 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9572 891 9833 34421 51853 51853 1 QIESDRQNLLK SFLKDFDREVEIRIKQIESDRQNLLKEVDN IRIKQIESDRQNLLKEVDNLYNIEILRLPK K Q I L K E 0 1 1 1 0 2 1 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 11 1 1342.7205 A8K7A2;Q53HL2 A8K7A2 38 48 CDCA8 Borealin yes no 2;3 2.6754E-06 147.4 6 1.0079 1.3496 7.5412 6 Median 1.0079 1.3496 7.5412 6 0 Median NaN NaN NaN 0 0 Median 131180000 60690000 70486000 131180000 60690000 70486000 0 0 0 9573 632 9834 34422;34423;34424;34425;34426;34427 51854;51855;51856;51857;51858;51859;51860 51855 7 QIESLETEMEFR EVRGQVSESEDSITKQIESLETEMEFRSAQ ITKQIESLETEMEFRSAQIADLQQKLLDAE K Q I F R S 0 1 0 0 0 1 4 0 0 1 1 0 1 1 0 1 1 0 0 0 0 0 12 0 1510.6974 Q59HG1;O95239;B3KNC0 Q59HG1 822 833 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 5.7949E-05 81.771 2 0.66614 1.0042 2.6093 2 Median NaN NaN NaN 0 0 Median 0.66614 1.0042 2.6093 2 0 Median 34196000 20399000 13797000 0 0 0 34196000 20399000 13797000 9574 1216 9835 34428;34429 51861;51862 51862 455 2 QIEYEYK RRKHETRLVEVDSGRQIEYEYKLAQALHEM LVEVDSGRQIEYEYKLAQALHEMREQHDAQ R Q I Y K L 0 0 0 0 0 1 2 0 0 1 0 1 0 0 0 0 0 0 2 0 0 0 7 0 971.46001 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;B4DZT3 P20700 235 241 LMNB1 Lamin-B1 yes no 2 0.02551 63.287 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9443000 9443000 0 9443000 9443000 0 0 0 0 9575 1285 9836 34430 51863 51863 1 QIFLGGVDKR FPTQALNFAFKDKYKQIFLGGVDKRTQFWL KDKYKQIFLGGVDKRTQFWLYFAGNLASGG K Q I K R T 0 1 0 1 0 1 0 2 0 1 1 1 0 1 0 0 0 0 0 1 0 0 10 1 1131.64 Q6NVC0;P05141 Q6NVC0 122 131 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes no 3 0.031094 20.788 1 0.73723 0.93137 NaN 1 Median 0.73723 0.93137 NaN 1 0 Median NaN NaN NaN 0 0 Median 6295200 3872100 2423000 6295200 3872100 2423000 0 0 0 9576 1234 9837 34431 51864 51864 1 QIFNGTFVK VSPKVRKVLQLLRLRQIFNGTFVKLNKASI QLLRLRQIFNGTFVKLNKASINMLRIVEPY R Q I V K L 0 0 1 0 0 1 0 1 0 1 0 1 0 2 0 0 1 0 0 1 0 0 9 0 1052.5655 A0A024R814;P18124;A8MUD9;C9JIJ5;C9JZ88 A0A024R814 127 135 RPL7 60S ribosomal protein L7 yes no 2 0.0045519 87.696 4 1 0.72129 0.90936 4.3134 4 Median 0.72129 0.90936 4.3134 4 0 Median NaN NaN NaN 0 0 Median 194130000 117440000 76695000 184930000 108240000 76695000 9198800 9198800 0 9577 189 9838 34432;34433;34434;34435;34436 51865;51866;51867;51868;51869;51870;51871;51872;51873;51874 51869 10 QIGASSRPPPNRTDK DQLRLERLQIDEQLRQIGASSRPPPNRTDK QIGASSRPPPNRTDKEKSYVTDDGQGMGRG R Q I D K E 1 2 1 1 0 1 0 1 0 1 0 1 0 0 3 2 1 0 0 0 0 0 15 2 1622.8489 X5DQX7;Q06787;W5ZQ92;R9WQY1;A8MQB8;G3V0J0;X5D907;R9WNI0;Q59GC1;B4DFH8;B4DZ17 X5DQX7 443 457 FMR1 Fragile X mental retardation protein 1 yes no 3 0.031838 53.869 1 1.0689 1.2188 NaN 1 Median 1.0689 1.2188 NaN 1 0 Median NaN NaN NaN 0 0 Median 1674000 647810 1026200 1674000 647810 1026200 0 0 0 9578 1447 9839 34437 51875 51875 1 QIGNVAALPGIVHR ACRGGGVGGFLPAMKQIGNVAALPGIVHRS KQIGNVAALPGIVHRSIGLPDVHSGYGFAI K Q I H R S 2 1 1 0 0 1 0 2 1 2 1 0 0 0 1 0 0 0 0 2 0 0 14 0 1443.831 Q9Y3I0;B4DNG5;B4DXF1 Q9Y3I0 68 81 RTCB tRNA-splicing ligase RtcB homolog yes no 3 3.7917E-05 100.19 3 2 0.59893 0.83999 8.6059 4 Median 0.67189 0.89534 11.82 2 0 Median 0.57594 0.82856 4.7335 2 0 Median 69958000 46228000 23730000 52645000 35221000 17424000 17313000 11007000 6306400 9579 1819 9840 34438;34439;34440;34441;34442 51876;51877;51878;51879;51880;51881;51882;51883;51884 51880 9 QIGVEHVVVYVNK DGPMPQTREHLLLARQIGVEHVVVYVNKAD ARQIGVEHVVVYVNKADAVQDSEMVELVEL R Q I N K A 0 0 1 0 0 1 1 1 1 1 0 1 0 0 0 0 0 0 1 5 0 0 13 0 1482.8195 P49411 P49411 170 182 TUFM Elongation factor Tu, mitochondrial yes yes 3 0.0058332 54.005 2 2 1.8272 2.4817 152.93 4 Median 0.50562 0.63125 23.75 2 0 Median 6.0806 8.8151 9.4049 2 0 Median 47931000 25530000 22401000 36125000 23390000 12735000 11806000 2139500 9666000 9580 1350 9841 34443;34444;34445;34446 51885;51886;51887;51888;51889 51887 5 QIILEK LLPSDTKRSQIYGSRQIILEKEETEELKRF KRSQIYGSRQIILEKEETEELKRFDDPGLM R Q I E K E 0 0 0 0 0 1 1 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 6 0 742.45889 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356 A0A024R1N4 326 331 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.035322 90.706 1 0.57281 0.71515 NaN 1 Median 0.57281 0.71515 NaN 1 0 Median NaN NaN NaN 0 0 Median 66678000 42367000 24311000 66678000 42367000 24311000 0 0 0 9581 62 9842 34447 51890 51890 1 QIILEKEETEELK LLPSDTKRSQIYGSRQIILEKEETEELKRF SRQIILEKEETEELKRFDDPGLMLMGFKPL R Q I L K R 0 0 0 0 0 1 5 0 0 2 2 2 0 0 0 0 1 0 0 0 0 0 13 1 1600.856 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356 A0A024R1N4 326 338 XRCC6 X-ray repair cross-complementing protein 6 yes no 3 0.033916 25.178 1 0.60263 0.72928 NaN 1 Median 0.60263 0.72928 NaN 1 0 Median NaN NaN NaN 0 0 Median 5595500 2911300 2684100 5595500 2911300 2684100 0 0 0 9582 62 9843 34448 51891 51891 1 QIIQQNPSLLPALLQQIGR PLEFLRNQPQFQQMRQIIQQNPSLLPALLQ QNPSLLPALLQQIGRENPQLLQQISQHQEH R Q I G R E 1 1 1 0 0 5 0 1 0 3 4 0 0 0 2 1 0 0 0 0 0 0 19 0 2129.2321 P54727;Q53F10;B7Z4W4;B4DEA3;B7ZA74 P54727 290 308 RAD23B UV excision repair protein RAD23 homolog B yes no 2 1.0475E-10 121.99 2 0.56383 0.78271 38.96 2 Median 0.56383 0.78271 38.96 2 0 Median NaN NaN NaN 0 0 Median 4739200 2424100 2315200 4739200 2424100 2315200 0 0 0 9583 1374 9844 34449;34450 51892;51893;51894;51895 51892 4 QIIVTR VAALIRSLPVEEQPKQIIVTRKGMLDPLEV SLPVEEQPKQIIVTRKGMLDPLEVHLLDFP K Q I T R K 0 1 0 0 0 1 0 0 0 2 0 0 0 0 0 0 1 0 0 1 0 0 6 0 728.45447 Q6P2Q9;B4DK16;Q6JH02;Q6JH03 Q6P2Q9 1860 1865 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.049008 75.311 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9584 1592 9845 34451 51896 51896 1 QILDPAAR AGDGKSIRTFKESPKQILDPAARVTGMKKW TFKESPKQILDPAARVTGMKKWPRTPKEEA K Q I A R V 2 1 0 1 0 1 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 8 0 882.49232 P46013 P46013 1074 1081 MKI67 Antigen KI-67 yes yes 2 0.020355 57.177 2 1 0.95811 1.3333 10.925 3 Median 0.94532 1.3064 2.8855 2 0 Median 0.98268 1.5733 NaN 1 0 Median 280130000 145230000 134890000 217710000 112780000 104930000 62415000 32456000 29958000 9585 1342 9846 34452;34453;34454 51897;51898;51899;51900 51897 4 QILDPAASVTGSR TGDSKSIKAFKESPKQILDPAASVTGSRRQ PKQILDPAASVTGSRRQLRTRKEKARALED K Q I S R R 2 1 0 1 0 1 0 1 0 1 1 0 0 0 1 2 1 0 0 1 0 0 13 0 1313.6939 P46013 P46013 2531 2543 MKI67 Antigen KI-67 yes yes 2 4.3544E-08 116.74 4 2 0.92161 1.273 16.45 6 Median 0.89833 1.2396 3.2267 4 0 Median 1.0332 1.6943 3.1927 2 0 Median 637400000 329330000 308070000 385900000 201430000 184480000 251500000 127900000 123600000 9586 1342 9847 34455;34456;34457;34458;34459;34460 51901;51902;51903;51904;51905;51906;51907;51908;51909;51910;51911;51912;51913;51914 51909 14 QILDSAASLTGSK TGDGKSMKAFMESPKQILDSAASLTGSKRQ PKQILDSAASLTGSKRQLRTPKGKSEVPED K Q I S K R 2 0 0 1 0 1 0 1 0 1 2 1 0 0 0 3 1 0 0 0 0 0 13 0 1289.6827 P46013 P46013 1682 1694 MKI67 Antigen KI-67 yes yes 2 1.1092E-10 131.12 4 2 1.0145 1.3331 17.73 6 Median 0.94798 1.2305 9.1572 4 0 Median 1.0878 1.7215 0.60039 2 0 Median 580970000 284380000 296590000 376250000 186970000 189280000 204720000 97413000 107310000 9587 1342 9848 34461;34462;34463;34464;34465;34466 51915;51916;51917;51918;51919;51920;51921;51922;51923 51921 9 QILIACSPVSSVR VSEHHDTILRVTRRRQILIACSPVSSVRKK RRQILIACSPVSSVRKKPKVTPTKESYTEE R Q I V R K 1 1 0 0 1 1 0 0 0 2 1 0 0 0 1 3 0 0 0 2 0 0 13 0 1428.7759 Q5QJE6;J3KP30;B7Z854;E9PRB3 Q5QJE6 111 123 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2 0.00058163 83.045 2 0.83838 1.1515 NaN 1 Median 0.83838 1.1515 NaN 1 0 Median NaN NaN NaN 0 0 Median 11030000 2193000 8836600 11030000 2193000 8836600 0 0 0 9588 1561 9849 34467;34468 51924;51925 51925 2 QIMENAEINNIIK PLRGKILNVREASHKQIMENAEINNIIKIV HKQIMENAEINNIIKIVGLQYKKNYEDEDS K Q I I K I 1 0 3 0 0 1 2 0 0 4 0 1 1 0 0 0 0 0 0 0 0 0 13 0 1528.7919 P11388;Q71UH4;Q02880;B4DKD0;E9PCY5 P11388 500 512 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2 4.0646E-12 153.12 6 2 0.88829 1.12 7.8027 7 Median 0.88851 1.1464 7.4397 5 0 Median 0.66521 1.0524 6.6402 2 0 Median 311460000 184220000 127240000 63871000 35604000 28267000 247590000 148610000 98978000 9589 1256;1437 9850;9851 34469;34470;34471;34472;34473;34474;34475;34476 51926;51927;51928;51929;51930;51931;51932;51933;51934;51935 51933 518 10 QINVSTDDSEVK QAEVLAEFERRKRARQINVSTDDSEVKACL RARQINVSTDDSEVKACLRALGEPITLFGE R Q I V K A 0 0 1 2 0 1 1 0 0 1 0 1 0 0 0 2 1 0 0 2 0 0 12 0 1333.6361 Q6IAP9;Q5T1M7;B2R7V4;Q59EL4;O43172 Q6IAP9 97 108 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes no 2 0.012624 50.452 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1787800 1787800 0 1787800 1787800 0 0 0 0 9590 708 9852 34477 51936 51936 1 QINWTVLYR NAKCESAFLSKRNPRQINWTVLYRRKHKKG SKRNPRQINWTVLYRRKHKKGQSEEIQKKR R Q I Y R R 0 1 1 0 0 1 0 0 0 1 1 0 0 0 0 0 1 1 1 1 0 0 9 0 1191.64 C9JXB8;C9JNW5;V9HW01;P83731 C9JXB8 48 56 RPL24;HEL-S-310 60S ribosomal protein L24 yes no 2 0.00335 77.318 2 1 0.71619 0.97155 1.952 2 Median 0.71619 0.97155 1.952 2 0 Median NaN NaN NaN 0 0 Median 124070000 119110000 4962200 13884000 8921500 4962200 110190000 110190000 0 9591 942 9853 34478;34479;34480 51937;51938;51939 51939 3 QINWTVLYRR NAKCESAFLSKRNPRQINWTVLYRRKHKKG KRNPRQINWTVLYRRKHKKGQSEEIQKKRT R Q I R R K 0 2 1 0 0 1 0 0 0 1 1 0 0 0 0 0 1 1 1 1 0 0 10 1 1347.7412 C9JXB8;C9JNW5;V9HW01;P83731 C9JXB8 48 57 RPL24;HEL-S-310 60S ribosomal protein L24 yes no 3 0.011093 34.755 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1793400 1793400 0 0 0 0 1793400 1793400 0 9592 942 9854 34481 51940 51940 1 QIPFHDVR DSITVAFENNWQPDRQIPFHDVRFPPPVGY NNWQPDRQIPFHDVRFPPPVGYNKDINESD R Q I V R F 0 1 0 1 0 1 0 0 1 1 0 0 0 1 1 0 0 0 0 1 0 0 8 0 1010.5298 X5DQX7;Q06787;W5ZQ92;R9WQY1;A8MQB8;G3V0J0;X5D907;R9WNI0;R9WPL0;A0A087WXI3;A0A0K0MJ24;Q8IXW7;A0A087WY29 X5DQX7 41 48 FMR1 Fragile X mental retardation protein 1 yes no 3 0.030676 53.775 3 1.0255 1.371 9.8026 3 Plateau 1.0255 1.371 9.8026 3 0 Plateau NaN NaN NaN 0 0 Median 35810000 17527000 18282000 35810000 17527000 18282000 0 0 0 9593 1447 9855 34482;34483;34484 51941;51942;51943 51942 3 QIPLQSLDLEFGSGFQPR RSLQTLALETEWELRQIPLQSLDLEFGSGF LQSLDLEFGSGFQPRVLPTQPNPVDASRAQ R Q I P R V 0 1 0 1 0 3 1 2 0 1 3 0 0 2 2 2 0 0 0 0 0 0 18 0 2031.0425 Q8N766 Q8N766 258 275 EMC1 ER membrane protein complex subunit 1 yes yes 2 0.0059631 82.202 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 481030 0 481030 481030 0 481030 0 0 0 9594 1642 9856 34485 51944 51944 1 QIQQELEQCDVPEDVR SDDDGGGWITPSNIKQIQQELEQCDVPEDV IQQELEQCDVPEDVRVGCLTTDFAMQNVLL K Q I V R V 0 1 0 2 1 4 3 0 0 1 1 0 0 0 1 0 0 0 0 2 0 0 16 0 1984.916 B2RAR2;Q9ULX3 B2RAR2 216 231 NOB1 RNA-binding protein NOB1 yes no 2 0.00010343 57.802 1 0.58185 0.80672 NaN 1 Median 0.58185 0.80672 NaN 1 0 Median NaN NaN NaN 0 0 Median 4226800 2565900 1661000 4226800 2565900 1661000 0 0 0 9595 726 9857 34486 51945;51946 51945 2 QISDGEREELNLTANR LLEMIHSIQNSQDMRQISDGEREELNLTAN ISDGEREELNLTANRLMGRTLTVEVSVETI R Q I N R L 1 2 2 1 0 1 3 1 0 1 2 0 0 0 0 1 1 0 0 0 0 0 16 1 1843.9024 B3KN59;B3KM36;O95816 B3KN59 71 86 BAG2 BAG family molecular chaperone regulator 2 yes no 3 1.2174E-05 51.193 1 0.53685 0.72723 NaN 1 Median 0.53685 0.72723 NaN 1 0 Median NaN NaN NaN 0 0 Median 34221000 22079000 12141000 34221000 22079000 12141000 0 0 0 9596 751 9858 34487 51947;51948 51948 2 QISGQYSGSPQLLK FAQKISRTVAAEVRKQISGQYSGSPQLLKN KQISGQYSGSPQLLKNLNIVGNISHHTTVP K Q I L K N 0 0 0 0 0 3 0 2 0 1 2 1 0 0 1 3 0 0 1 0 0 0 14 0 1504.7886 Q96N67;A0A1B0GUE9 Q96N67 22 35 DOCK7 Dedicator of cytokinesis protein 7 yes no 2 0.0069754 40.589 1 0.48606 0.62874 NaN 1 Median 0.48606 0.62874 NaN 1 0 Median NaN NaN NaN 0 0 Median 1775200 1192600 582650 1775200 1192600 582650 0 0 0 9597 1696 9859 34488 51949;51950 51949 2 QISNLQQSISDAEQR RVIQRLRSEIDNVKKQISNLQQSISDAEQR QISNLQQSISDAEQRGENALKDAKNKLNDL K Q I Q R G 1 1 1 1 0 4 1 0 0 2 1 0 0 0 0 3 0 0 0 0 0 0 15 0 1715.8438 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 418 432 KRT1 Keratin, type II cytoskeletal 1 no no 2 3.1308E-09 187.78 6 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 435390000 435390000 0 435390000 435390000 0 0 0 0 + 9598 1113;1114 9860 34489;34490;34491;34492;34493;34494 51951;51952;51953;51954;51955;51956;51957;51958;51959 51954 9 QISNLQQSISDAEQRGENALK RVIQRLRSEIDNVKKQISNLQQSISDAEQR QSISDAEQRGENALKDAKNKLNDLEDALQQ K Q I L K D 2 1 2 1 0 4 2 1 0 2 2 1 0 0 0 3 0 0 0 0 0 0 21 1 2328.167 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 418 438 KRT1 Keratin, type II cytoskeletal 1 no no 3 1.7842E-21 154.52 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 374340000 374340000 0 300330000 300330000 0 74005000 74005000 0 + 9599 1113;1114 9861 34495;34496;34497;34498 51960;51961;51962;51963 51960 4 QISQAYEVLSDAK KYHPDKNPNEGEKFKQISQAYEVLSDAKKR FKQISQAYEVLSDAKKRELYDKGGEQAIKE K Q I A K K 2 0 0 1 0 2 1 0 0 1 1 1 0 0 0 2 0 0 1 1 0 0 13 0 1450.7304 P31689 P31689 47 59 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 2 0.00023544 70.977 1 2 0.93188 1.4042 36.091 3 Median 0.63038 0.80463 NaN 1 0 Median 0.99897 1.4905 8.4405 2 0 Median 31579000 17936000 13642000 13881000 9232300 4649200 17697000 8704200 8993200 9600 1309 9862 34499;34500;34501 51964;51965;51966;51967;51968;51969 51965 6 QISRPSAAGINLMIGSTR SQLDPVNERMLNMIRQISRPSAAGINLMIG RPSAAGINLMIGSTRYGDGPRPPKMARYDN R Q I T R Y 2 2 1 0 0 1 0 2 0 3 1 0 1 0 1 3 1 0 0 0 0 0 18 1 1871.0047 Q08211;B3KU66 Q08211 1137 1154 DHX9 ATP-dependent RNA helicase A yes no 3 8.7106E-13 82.774 2 0.44375 0.68931 7.1613 2 Median NaN NaN NaN 0 0 Median 0.44375 0.68931 7.1613 2 0 Median 77614000 52393000 25221000 0 0 0 77614000 52393000 25221000 9601 1448 9863 34502;34503 51970;51971 51970 656 2 QISVGFIGYPNVGK IQLLRQFGKLHTDKKQISVGFIGYPNVGKS KQISVGFIGYPNVGKSSVINTLRSKKVCNV K Q I G K S 0 0 1 0 0 1 0 3 0 2 0 1 0 1 1 1 0 0 1 2 0 0 14 0 1477.7929 Q5T0F3;Q13823;B4DPI9;H0YG10 Q5T0F3 310 323 GNL2 Nucleolar GTP-binding protein 2 yes no 2 2.8628E-05 121.6 4 0.73895 0.94156 12.047 2 Median 0.73895 0.94156 12.047 2 0 Median NaN NaN NaN 0 0 Median 13977000 4941800 9034800 13977000 4941800 9034800 0 0 0 9602 1477 9864 34504;34505;34506;34507 51972;51973;51974;51975;51976 51974 5 QITQSALLAEAR YDVLRGIFTSEIGTKQITQSALLAEARSDY GTKQITQSALLAEARSDYSEAAKQYDEALN K Q I A R S 3 1 0 0 0 2 1 0 0 1 2 0 0 0 0 1 1 0 0 0 0 0 12 0 1299.7147 P78527 P78527 2951 2962 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.015593 72.531 2 0.42732 0.59321 19.91 2 Median 0.42732 0.59321 19.91 2 0 Median NaN NaN NaN 0 0 Median 9423800 6717000 2706800 9423800 6717000 2706800 0 0 0 9603 1427 9865 34508;34509 51977;51978 51977 2 QITVNDLPVGR SFRGLFIIDDKGILRQITVNDLPVGRSVDE GILRQITVNDLPVGRSVDETLRLVQAFQFT R Q I G R S 0 1 1 1 0 1 0 1 0 1 1 0 0 0 1 0 1 0 0 2 0 0 11 0 1210.667 A0A0A0MSI0;Q06830;B2R4P2;A0A0A0MRQ5;B4DF70;V9HW12;P32119 A0A0A0MSI0 141 151 PRDX1;HEL-S-2a;PRDX2 Peroxiredoxin-1;Peroxiredoxin-2 no no 2 0.0010611 121.5 2 1 1.9096 2.9816 NaN 1 Median NaN NaN NaN 0 0 Median 1.9096 2.9816 NaN 1 0 Median 44097000 15727000 28370000 21721000 8977600 12743000 22377000 6749800 15627000 9604 397;801 9866 34510;34511;34512 51979;51980;51981 51980 3 QIVGTPVNSEDSDTR QTEKKDSKIVPGNEKQIVGTPVNSEDSDTR QIVGTPVNSEDSDTRQTSHLQARSLSEINK K Q I T R Q 0 1 1 2 0 1 1 1 0 1 0 0 0 0 1 2 2 0 0 2 0 0 15 0 1616.7642 Q5QJE6;J3KP30;B7Z854 Q5QJE6 228 242 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2 5.5931E-41 210.95 4 2 0.86137 1.1695 10.746 6 Median 0.92261 1.2514 7.1362 4 0 Median 0.65624 1.0327 3.779 2 0 Median 171720000 95528000 76197000 107970000 56777000 51197000 63750000 38750000 25000000 9605 1561 9867 34513;34514;34515;34516;34517;34518 51982;51983;51984;51985;51986;51987;51988;51989;51990;51991;51992 51983 11 QKLDILDQER QQLLAHGHYASPEIKQKLDILDQERADLEK SPEIKQKLDILDQERADLEKAWVQRRMMLD K Q K E R A 0 1 0 2 0 2 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 10 1 1256.6725 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16 Q13813 1418 1427 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.014034 67.563 1 0.75787 0.97527 NaN 1 Median 0.75787 0.97527 NaN 1 0 Median NaN NaN NaN 0 0 Median 4245600 2395600 1849900 4245600 2395600 1849900 0 0 0 9606 1476 9868 34519 51993 51993 1 QKLDILDQERADLEK QQLLAHGHYASPEIKQKLDILDQERADLEK QKLDILDQERADLEKAWVQRRMMLDQCLEL K Q K E K A 1 1 0 3 0 2 2 0 0 1 3 2 0 0 0 0 0 0 0 0 0 0 15 2 1812.9581 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16 Q13813 1418 1432 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 3 0.0089471 30.133 1 0.58676 0.69112 NaN 1 Median 0.58676 0.69112 NaN 1 0 Median NaN NaN NaN 0 0 Median 9021700 4772400 4249300 9021700 4772400 4249300 0 0 0 9607 1476 9869 34520 51994 51994 1 QKLDPAASVTGSK GGEDKSINAFRETAKQKLDPAASVTGSKRH AKQKLDPAASVTGSKRHPKTKEKAQPLEDL K Q K S K R 2 0 0 1 0 1 0 1 0 0 1 2 0 0 1 2 1 0 0 1 0 0 13 1 1300.6987 P46013 P46013 1440 1452 MKI67 Antigen KI-67 yes no 2 0.0064582 54.784 1 0.88081 1.0804 NaN 1 Median 0.88081 1.0804 NaN 1 0 Median NaN NaN NaN 0 0 Median 7112600 3695000 3417600 7112600 3695000 3417600 0 0 0 9608 1342 9870 34521 51995 51995 1 QKPELLNK KICDVYNAVMDVVKKQKPELLNKITKNLGF VMDVVKKQKPELLNKITKNLGFGMGIEFRE K Q K N K I 0 0 1 0 0 1 1 0 0 0 2 2 0 0 1 0 0 0 0 0 0 0 8 1 968.56548 Q9Y5B9;Q0VGA3 Q9Y5B9 336 343 SUPT16H FACT complex subunit SPT16 yes no 2;3 0.0051326 120.49 4 1 0.86641 0.98338 8.4091 5 Linear 0.85681 1.0458 7.7271 4 0 Linear 0.67538 1.0775 NaN 1 0 Median 231940000 127240000 104700000 201520000 110630000 90891000 30423000 16616000 13808000 9609 1829 9871 34522;34523;34524;34525;34526 51996;51997;51998;51999;52000 51997 5 QKPVQTFTEEK VPYTGEKKGKTFIPKQKPVQTFTEEKVSLD FIPKQKPVQTFTEEKVSLDPELEEALTSAS K Q K E K V 0 0 0 0 0 2 2 0 0 0 0 2 0 1 1 0 2 0 0 1 0 0 11 1 1333.6878 Q5HYL6;Q9NYL9 Q5HYL6 102 112 DKFZp686E1899;TMOD3 Tropomodulin-3 yes no 2 0.003383 114.86 2 1.0008 1.2268 10.071 2 Median 1.0008 1.2268 10.071 2 0 Median NaN NaN NaN 0 0 Median 6412500 3541300 2871100 6412500 3541300 2871100 0 0 0 9610 1558 9872 34527;34528 52001;52002;52003 52001 3 QKVDSLLENLEK GDDLQAIKKELTQIKQKVDSLLENLEKIEK QIKQKVDSLLENLEKIEKEQSKQAVEMKND K Q K E K I 0 0 1 1 0 1 2 0 0 0 3 2 0 0 0 1 0 0 0 1 0 0 12 1 1414.7668 B2R5W2;G3V4C1;G3V4W0;B4DY08;B2R603;G3V2Q1;P07910;G3V576;A8K9A4;G3V2D6;B4DQQ2;Q6PKD2;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8 B2R5W2 192 203 HNRNPC;HNRPCL1;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 no no 2 5.1569E-05 99.788 3 0.65698 0.80529 2.0918 3 Median 0.65698 0.80529 2.0918 3 0 Median NaN NaN NaN 0 0 Median 61278000 39239000 22039000 61278000 39239000 22039000 0 0 0 9611 694 9873 34529;34530;34531 52004;52005;52006;52007 52006 4 QKVEGTEPTTAFNLFVGNLNFNK KKEMAKQKAAPEAKKQKVEGTEPTTAFNLF TTAFNLFVGNLNFNKSAPELKTGISDVFAK K Q K N K S 1 0 4 0 0 1 2 2 0 0 2 2 0 3 1 0 3 0 0 2 0 0 23 1 2567.302 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99 B3KTP9 219 241 NCL Nucleolin yes no 3 6.7869E-05 70.121 3 1.0116 1.2575 17.562 3 Median 1.0116 1.2575 17.562 3 0 Median NaN NaN NaN 0 0 Median 34363000 17529000 16833000 34363000 17529000 16833000 0 0 0 9612 119 9874 34532;34533;34534 52008;52009;52010;52011 52009 4 QLAAAFHEEFVVR MSRNEEATKHLECTKQLAAAFHEEFVVRED TKQLAAAFHEEFVVREDLMGLAIGTHGSNI K Q L V R E 3 1 0 0 0 1 2 0 1 0 1 0 0 2 0 0 0 0 0 2 0 0 13 0 1515.7834 A0A0F7KYT8;A0A0F7L0Q8;B4DXZ6;A0A0F7L1S3;P51114;B4DM78;E7EU85;B4DGH9;E9PFF5;B4DM21 A0A0F7KYT8 214 226 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 3 0.0024771 62.528 3 0.68014 0.9701 NaN 1 Median 0.68014 0.9701 NaN 1 0 Median NaN NaN NaN 0 0 Median 8031300 3346900 4684400 8031300 3346900 4684400 0 0 0 9613 438 9875 34535;34536;34537 52012;52013;52014 52013 3 QLADETLLK DQIAQLEASLAAAKKQLADETLLKVDLENR LAAAKKQLADETLLKVDLENRCQSLTEDLE K Q L L K V 1 0 0 1 0 1 1 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 9 0 1029.5706 P20700;E9PBF6;A0A0D9SFE5;Q6DC98 P20700 183 191 LMNB1 Lamin-B1 yes no 2 0.021607 51.346 1 1.2759 1.6384 NaN 1 Median 1.2759 1.6384 NaN 1 0 Median NaN NaN NaN 0 0 Median 6063900 2415000 3648900 6063900 2415000 3648900 0 0 0 9614 1285 9876 34538 52015 52015 1 QLAEDFLK RQTLMWSATWPKEVRQLAEDFLKDYIHINI TWPKEVRQLAEDFLKDYIHINIGALELSAN R Q L L K D 1 0 0 1 0 1 1 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 8 0 962.5073 B4DN41;J3KTA4;B5BUE6;P17844;B4DNG2;Q7Z2V5;Q59E92;J3KRZ1;J3QSF1 B4DN41 277 284 DDX5;DKFZp686J01190 Probable ATP-dependent RNA helicase DDX5 yes no 2 0.01811 91.318 2 0.44063 0.56013 NaN 1 Median 0.44063 0.56013 NaN 1 0 Median NaN NaN NaN 0 0 Median 8665300 6658600 2006700 8665300 6658600 2006700 0 0 0 9615 833 9877 34539;34540 52016;52017 52017 2 QLAEDFLR RQTLMWSATWPKEVRQLAEDFLRDYTQINV TWPKEVRQLAEDFLRDYTQINVGNLELSAN R Q L L R D 1 1 0 1 0 1 1 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 990.51345 Q59F66;Q92841;B4DZQ7 Q59F66 367 374 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 0.02639 54.157 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2131200 2131200 0 2131200 2131200 0 0 0 0 9616 1554 9878 34541 52018 52018 1 QLAEEDLAQQR AARLSVAAQEAARLRQLAEEDLAQQRALAE ARLRQLAEEDLAQQRALAEKMLKEKMQAVQ R Q L Q R A 2 1 0 1 0 3 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1299.6419 Q15149 Q15149 2432 2442 PLEC Plectin yes yes 2 5.5496E-08 152.11 4 0.87435 1.2075 13.618 4 Median 0.87435 1.2075 13.618 4 0 Median NaN NaN NaN 0 0 Median 30574000 15804000 14770000 30574000 15804000 14770000 0 0 0 9617 1507 9879 34542;34543;34544;34545 52019;52020;52021;52022;52023;52024;52025 52019 7 QLAEFAR LPPGGIPGIDLSDPKQLAEFARMKPRKIKE GIDLSDPKQLAEFARMKPRKIKEDDAPRTI K Q L A R M 2 1 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 833.43955 H0YJV7;P25490;H0YJU4;Q96MM3 H0YJV7 104 110 YY1;ZFP42 Transcriptional repressor protein YY1;Zinc finger protein 42 homolog yes no 2 0.018237 69.383 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9618 1102 9880 34546 52026 52026 1 QLAQFCNITTCLAVGGLDVK VPTRELGIQVHSVTRQLAQFCNITTCLAVG CNITTCLAVGGLDVKSQEAALRAAPDILIA R Q L V K S 2 0 1 1 2 2 0 2 0 1 3 1 0 1 0 0 2 0 0 2 0 0 20 0 2207.1079 B7Z6D5;B3GQE6;Q96GQ7;A0A087X059 B7Z6D5 280 299 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 4.9219E-12 139.58 4 0.78427 1.0139 24.742 2 Median 0.78427 1.0139 24.742 2 0 Median NaN NaN NaN 0 0 Median 14643000 5326100 9316800 14643000 5326100 9316800 0 0 0 9619 750 9881 34547;34548;34549;34550 52027;52028;52029;52030;52031 52027 5 QLASGLLLVTGPLVLNR ILTGRHRGKRVVFLKQLASGLLLVTGPLVL ASGLLLVTGPLVLNRVPLRRTHQKFVIATS K Q L N R V 1 1 1 0 0 1 0 2 0 0 6 0 0 0 1 1 1 0 0 2 0 0 17 0 1763.0669 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3 Q8TBK5 167 183 RPL6 60S ribosomal protein L6 yes no 2 1.0469E-193 337.53 5 0.68851 0.94438 10.89 5 Median 0.68851 0.94438 10.89 5 0 Median NaN NaN NaN 0 0 Median 220370000 127290000 93079000 220370000 127290000 93079000 0 0 0 9620 277 9882 34551;34552;34553;34554;34555 52032;52033;52034;52035;52036;52037;52038;52039;52040;52041;52042;52043;52044;52045 52034 14 QLASGLLLVTGPLVLNRVPLRR ILTGRHRGKRVVFLKQLASGLLLVTGPLVL LVTGPLVLNRVPLRRTHQKFVIATSTKIDI K Q L R R T 1 3 1 0 0 1 0 2 0 0 7 0 0 0 2 1 1 0 0 3 0 0 22 2 2384.4744 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3 Q8TBK5 167 188 RPL6 60S ribosomal protein L6 yes no 3 0.0074638 77.505 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9621 277 9883 34556 52046 52046 1 QLCDNAGFDATNILNK LLIGAYAKALEIIPRQLCDNAGFDATNILN LCDNAGFDATNILNKLRARHAQGGTWYGVD R Q L N K L 2 0 3 2 1 1 0 1 0 1 2 1 0 1 0 0 1 0 0 0 0 0 16 0 1792.8414 B7Z1C9;B7Z7I4;Q6IBT3;Q53HV2;Q99832 B7Z1C9 320 335 CCT7 T-complex protein 1 subunit eta yes no 2 0.013928 80.746 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 856110 856110 0 856110 856110 0 0 0 0 9622 903 9884 34557 52047 52047 1 QLCVLQQLK SIEKLRARLEADEKKQLCVLQQLKESEHHA EADEKKQLCVLQQLKESEHHADLLKGRVEN K Q L L K E 0 0 0 0 1 3 0 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 9 0 1128.6325 P49454 P49454 2413 2421 CENPF Centromere protein F yes yes 2 0.032325 80.229 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 624640 624640 0 624640 624640 0 0 0 0 9623 1351 9885 34558 52048 52048 1 QLDDKDEEINQQSQLVEK AERRKCEEEIAKLYKQLDDKDEEINQQSQL DKDEEINQQSQLVEKLKTQMLDQEELLAST K Q L E K L 0 0 1 3 0 4 3 0 0 1 2 2 0 0 0 1 0 0 0 1 0 0 18 1 2158.039 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;M1V490;M1VPF9;M1V481;M1VPF7;M1VRN0;M1VKI9;M1VE89 V9HW29 431 448 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5B-RET(NM_020630)_K22;R12;KIF5B-RET(NM_020975)_K22;R12;KIF5B-ALK_K17;A20;KIF5B-RET(NM_020630)_K15;R12;KIF5B-RET(NM_020975)_K15;R12;KIF5B-RET(NM_020630)_K16;R12;KIF5B-RET(NM_020975)_K16;R12 Kinesin-like protein;Kinesin-1 heavy chain yes no 3 0.011472 71.402 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 725410 0 725410 725410 0 725410 0 0 0 9624 978 9886 34559 52049 52049 1 QLDDLKVELSQLR KARDLRGKKKEELLKQLDDLKVELSQLRVA LKQLDDLKVELSQLRVAKVTGGAASKLSKI K Q L L R V 0 1 0 2 0 2 1 0 0 0 4 1 0 0 0 1 0 0 0 1 0 0 13 1 1555.857 P42766;F2Z388;A0A024R866;A4D2M5 P42766 20 32 RPL35;LOC154880 60S ribosomal protein L35 yes no 3 0.00047297 114.24 4 0.84479 1.0284 8.3725 3 Plateau 0.84479 1.0284 8.3725 3 0 Plateau NaN NaN NaN 0 0 Median 35349000 19214000 16135000 35349000 19214000 16135000 0 0 0 9625 1340 9887 34560;34561;34562;34563 52050;52051;52052;52053 52050 4 QLDEASGANDEIVQLR EDNAELNNQNFYLSKQLDEASGANDEIVQL LDEASGANDEIVQLRSEVDHLRREITEREM K Q L L R S 2 1 1 2 0 2 2 1 0 1 2 0 0 0 0 1 0 0 0 1 0 0 16 0 1756.8592 H7BYJ3;O14578 H7BYJ3 601 616 CIT Citron Rho-interacting kinase yes no 2 0.013033 88.441 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9626 1116 9888 34564 52054 52054 1 QLDECASAITK HKLKAQQDKLDKINKQLDECASAITKAQVA KINKQLDECASAITKAQVAIKTADRNLQKA K Q L T K A 2 0 0 1 1 1 1 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 11 0 1234.5864 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 912 922 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.2321E-13 182.46 4 2 0.66599 0.862 9.4253 6 Median 0.70746 0.90103 5.2987 4 0 Median 0.50463 0.77062 5.2821 2 0 Median 276550000 162000000 114550000 230880000 132960000 97920000 45667000 29036000 16631000 9627 1760 9889 34565;34566;34567;34568;34569;34570 52055;52056;52057;52058;52059;52060;52061;52062;52063;52064 52057 10 QLDSIVGER NLEPLFEQYINNLRRQLDSIVGERGRLDSE INNLRRQLDSIVGERGRLDSELRGMQDLVE R Q L E R G 0 1 0 1 0 1 1 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 9 0 1015.5298 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;B4DRY0;CON__P04259;B4DKV4;CON__P13647;P13647;B4E1T1;F8W0C6 B4DRR0 195 203 KRT6A;KRT6C;KRT5 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 5 no no 2 0.0084175 79.906 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55821000 55821000 0 30677000 30677000 0 25143000 25143000 0 + 9628 459;953;961 9890 34571;34572;34573;34574;34575 52065;52066;52067;52068;52069 52066 5 QLEAIVR ERDSDRRSSIPITVRQLEAIVRIAEALSKM SSIPITVRQLEAIVRIAEALSKMKLQPFAT R Q L V R I 1 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 7 0 827.4865 Q53FG5;B1AHB0;A8K521;P33992;B1AHB1;B4DQ39;B3KVF0;Q59F49 Q53FG5 612 618 MCM5 DNA helicase;DNA replication licensing factor MCM5 yes no 2 0.037693 55.441 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4149500 4149500 0 4149500 4149500 0 0 0 0 9629 612 9891 34576 52070 52070 1 QLEDGRTLSDYNIQK EGIPPDQQRLIFAGKQLEDGRTLSDYNIQK QLEDGRTLSDYNIQKESTLHLVLRLRGGAK K Q L Q K E 0 1 1 2 0 2 1 1 0 1 2 1 0 0 0 1 1 0 1 0 0 0 15 1 1778.8799 Q5RKT7;B2RDW1;P62979;Q8WYN9;J3QS39;J3QTR3;F5H6Q2;Q3MIH3;F5GYU3;F5H2Z3;F5H265;Q5UGI3;B4DV12;F5H388;F5H747;F5GXK7;J3QKN0;Q5U5U6;Q5PY61;Q96C32;Q96MH4;L8B4I8;L8B196;L8B4R0;A8K674;L8B4Z6;L8B4M0;L8B4J3;P62987;P0CG47;P0CG48;M0R1V7;Q49A90;Q9UFQ0;Q96H31;Q66K58;Q59EM9;M0R1M6;M0R2S1 Q5RKT7 49 63 RPS27A;HEL112;UBB;UBC;UBA52;UbC;DKFZp434K0435 Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 3 1.2181E-05 99.834 4 0.71063 0.93555 5.7959 4 Median 0.71063 0.93555 5.7959 4 0 Median NaN NaN NaN 0 0 Median 109540000 62602000 46934000 109540000 62602000 46934000 0 0 0 9630 742 9892 34577;34578;34579;34580 52071;52072;52073;52074;52075;52076;52077;52078;52079 52075 9 QLEEAEEEAQR DQADKASTRLKQLKRQLEEAEEEAQRANAS QLKRQLEEAEEEAQRANASRRKLQRELEDA R Q L Q R A 2 1 0 0 0 2 5 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 11 0 1330.6001 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1878 1888 MYH9;FLJ00279 Myosin-9 no no 2 1.0077E-09 154.01 5 1.045 1.4105 28.485 3 Median 1.045 1.4105 28.485 3 0 Median NaN NaN NaN 0 0 Median 14707000 7101900 7605600 14707000 7101900 7605600 0 0 0 9631 61;490 9893 34581;34582;34583;34584;34585 52080;52081;52082;52083;52084 52080 5 QLEEEQAVRPK NLCSEYVKDIYAYLRQLEEEQAVRPKYLLG AYLRQLEEEQAVRPKYLLGREVTGNMRAIL R Q L P K Y 1 1 0 0 0 2 3 0 0 0 1 1 0 0 1 0 0 0 0 1 0 0 11 1 1325.6939 P14635;E9PC90;H1UBN2 P14635 180 190 CCNB1;CCNB1V G2/mitotic-specific cyclin-B1 yes no 2;3 7.4336E-57 257.27 6 4 0.8643 1.1983 15.128 10 Median 0.81364 1.0796 9.359 6 0 Median 0.91541 1.4029 8.2339 4 0 Median 96059000 53798000 42261000 65818000 37703000 28115000 30242000 16096000 14146000 9632 1268 9894 34586;34587;34588;34589;34590;34591;34592;34593;34594;34595 52085;52086;52087;52088;52089;52090;52091;52092;52093;52094;52095;52096;52097;52098;52099;52100;52101;52102;52103;52104;52105 52092 21 QLETLGQEK NMDNMFESYINNLRRQLETLGQEKLKLEAE INNLRRQLETLGQEKLKLEAELGNMQGLVE R Q L E K L 0 0 0 0 0 2 2 1 0 0 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1044.5451 CON__P05787;P05787;Q969I0;F8VUG2;CON__H-INV:HIT000292931;F8VP67;CON__Q9H552;F8W1U3 CON__P05787 150 158 KRT8 Keratin, type II cytoskeletal 8 no no 2 1.7077E-09 164.71 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 99077000 99077000 0 99077000 99077000 0 0 0 0 + 9633 955;1068 9895 34596 52106 52106 1 QLEVEPEEPEAENK LRMIVMGHRRVHISRQLEVEPEEPEAENKH RQLEVEPEEPEAENKHKPRRKSKRGKKEAE R Q L N K H 1 0 1 0 0 1 6 0 0 0 1 1 0 0 2 0 0 0 0 1 0 0 14 0 1639.7577 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0 K7EJE8 105 118 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 2 0.0071641 47.971 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1923800 0 1923800 0 0 0 1923800 0 1923800 9634 780 9896 34597 52107;52108 52107 2 QLEVYTSGGDPESVAGEYGR LNVLHSLVDKSNINRQLEVYTSGGDPESVA TSGGDPESVAGEYGRHSLYKMLGYFSLVGL R Q L G R H 1 1 0 1 0 1 3 4 0 0 1 0 0 0 1 2 1 0 2 2 0 0 20 0 2112.96 B0QY90;B4DQF6;B3KPB9;B0QY89;Q9Y262 B0QY90 145 164 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2 0.027536 62.237 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1239600 1239600 0 1239600 1239600 0 0 0 0 9635 666 9897 34598 52109 52109 1 QLFHPEQLITGK LEPTVIDEVRTGTYRQLFHPEQLITGKEDA TYRQLFHPEQLITGKEDAANNYARGHYTIG R Q L G K E 0 0 0 0 0 2 1 1 1 1 2 1 0 1 1 0 1 0 0 0 0 0 12 0 1409.7667 B3KT06;P68363;B3KPS3;A8JZY9;F8VVB9;C9J2C0;Q7Z3M3;Q9NY65;F8VRZ4;F8VS66;F8VX09;F8VWV9;C9K0S6;Q6QMJ5;Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;Q8N532;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2;Q71U36;Q1ZYQ1;Q13748;Q6PEY2;F8VQQ4 B3KT06 50 61 TUBA1B;TUBA8;DKFZp686L04275;TUBA1A;TUBA1C;TUBA1;TUBA4A;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-8 chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 2;3 1.8107E-25 218.55 8 4 0.42893 0.55504 119.31 11 Median 0.40475 0.53262 9.1329 7 0 Median 3.5311 5.5223 3.3628 4 0 Median 748620000 465550000 283070000 629710000 438580000 191130000 118910000 26969000 91942000 9636 777;1422;1607;1056 9898 34599;34600;34601;34602;34603;34604;34605;34606;34607;34608;34609;34610 52110;52111;52112;52113;52114;52115;52116;52117;52118;52119;52120;52121;52122;52123;52124;52125;52126;52127;52128;52129 52116 20 QLFSSLFSGILK TPLQAVAQRDPIIAKQLFSSLFSGILKEMD IAKQLFSSLFSGILKEMDKFKTLSEKNNIT K Q L L K E 0 0 0 0 0 1 0 1 0 1 3 1 0 2 0 3 0 0 0 0 0 0 12 0 1338.7547 P78527 P78527 2807 2818 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.6427E-11 154.84 4 0.49166 0.62008 45.582 4 Median 0.49166 0.62008 45.582 4 0 Median NaN NaN NaN 0 0 Median 29381000 18750000 10631000 29381000 18750000 10631000 0 0 0 9637 1427 9899 34611;34612;34613;34614 52130;52131;52132;52133;52134;52135;52136;52137;52138 52133 9 QLGEVELQCGICTK VMDTQAGSVDEENGRQLGEVELQCGICTKW RQLGEVELQCGICTKWFTADTFGIDTSSCL R Q L T K W 0 0 0 0 2 2 2 2 0 1 2 1 0 0 0 0 1 0 0 1 0 0 14 0 1633.7804 A8K6T5;Q9UBL3;E5RFH5 A8K6T5 109 122 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 2 0.00016163 93.766 2 0.71913 0.92338 NaN 1 Median 0.71913 0.92338 NaN 1 0 Median NaN NaN NaN 0 0 Median 5203600 3796500 1407000 5203600 3796500 1407000 0 0 0 9638 627 9900 34615;34616 52139;52140 52140 2 QLGGLYINFNADK LKLTSSSIDPGLSIKQLGGLYINFNADKLQ IKQLGGLYINFNADKLQSNKRTLTQIKEKK K Q L D K L 1 0 2 1 0 1 0 2 0 1 2 1 0 1 0 0 0 0 1 0 0 0 13 0 1451.7409 Q5QJE6 Q5QJE6 572 584 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 2 0.0074499 77.387 1 1 0.95148 1.2186 NaN 1 Median 0.95148 1.2186 NaN 1 0 Median NaN NaN NaN 0 0 Median 14625000 11110000 3514600 8544500 5029800 3514600 6080500 6080500 0 9639 1561 9901 34617;34618 52141;52142 52141 2 QLGLPHQR ALKQYRAGPSFEERKQLGLPHQRRGGNFKS PSFEERKQLGLPHQRRGGNFKSKSRYKRRK K Q L Q R R 0 1 0 0 0 2 0 1 1 0 2 0 0 0 1 0 0 0 0 0 0 0 8 0 947.5301 B7Z6D5;B3GQE6;Q96GQ7;Q53G15 B7Z6D5 743 750 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 3 0.0095509 64.567 3 1 0.84735 1.1431 29.393 4 Median 0.85822 1.146 24.047 3 0 Median 0.62879 0.848 NaN 1 0 Median 47142000 24131000 23011000 41788000 20806000 20982000 5354100 3325200 2028800 9640 750 9902 34619;34620;34621;34622 52143;52144;52145;52146;52147;52148;52149 52144 7 QLGLPTALK GPLEQFPHSMEPQLRQLGLPTALKRGVVTL MEPQLRQLGLPTALKRGVVTLLSDYEVCKE R Q L L K R 1 0 0 0 0 1 0 1 0 0 3 1 0 0 1 0 1 0 0 0 0 0 9 0 939.57532 A0A024RAE1;Q9UKD2 A0A024RAE1 155 163 C1orf33;MRTO4 mRNA turnover protein 4 homolog yes no 2 0.016926 66.27 3 1 0.73672 0.89645 8.4248 4 Median 0.74205 0.89897 9.4957 3 0 Median 0.58738 0.88654 NaN 1 0 Median 69189000 41070000 28119000 60708000 35617000 25091000 8481500 5452800 3028700 9641 240 9903 34623;34624;34625;34626 52150;52151;52152;52153 52152 4 QLGLPTALKR GPLEQFPHSMEPQLRQLGLPTALKRGVVTL EPQLRQLGLPTALKRGVVTLLSDYEVCKEG R Q L K R G 1 1 0 0 0 1 0 1 0 0 3 1 0 0 1 0 1 0 0 0 0 0 10 1 1095.6764 A0A024RAE1;Q9UKD2 A0A024RAE1 155 164 C1orf33;MRTO4 mRNA turnover protein 4 homolog yes no 3 0.030047 47.228 2 0.64542 0.84815 42.855 2 Median 0.64542 0.84815 42.855 2 0 Median NaN NaN NaN 0 0 Median 11820000 6959800 4860400 11820000 6959800 4860400 0 0 0 9642 240 9904 34627;34628 52154;52155 52155 2 QLGQSEGSVSLSLVK IEAAIGPEAAKIARKQLGQSEGSVSLSLVK QLGQSEGSVSLSLVKEQAFGGLTRALALDC K Q L V K E 0 0 0 0 0 2 1 2 0 0 3 1 0 0 0 4 0 0 0 2 0 0 15 0 1530.8253 A0A0C4DG22;B4E331;B4DJ95;Q9GZR2 A0A0C4DG22 126 140 REXO4 RNA exonuclease 4 yes no 2 1.1422E-05 92.112 3 0.93534 1.1907 17.822 3 Median 0.93534 1.1907 17.822 3 0 Median NaN NaN NaN 0 0 Median 14281000 7954500 6326900 14281000 7954500 6326900 0 0 0 9643 422 9905 34629;34630;34631 52156;52157;52158 52158 3 QLHLNQLIR RISHLPLVEELRSLRQLHLNQLIRTSGVVT ELRSLRQLHLNQLIRTSGVVTSCTGVLPQL R Q L I R T 0 1 1 0 0 2 0 0 1 1 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1133.6669 B4DSV5;B3KXZ4;H0Y8E6;P49736;B7Z8Z6 B4DSV5 169 177 MCM2 DNA helicase;DNA replication licensing factor MCM2 yes no 3 0.0028054 90.709 1 0.6627 0.93834 NaN 1 Median 0.6627 0.93834 NaN 1 0 Median NaN NaN NaN 0 0 Median 1487500 1052900 434570 1487500 1052900 434570 0 0 0 9644 790 9906 34632 52159;52160 52160 2 QLILSCLLNICQK LEPLPQEQGNMEYTKQLILSCLLNICQKLS TKQLILSCLLNICQKLSPDGGKIPKDILDE K Q L Q K L 0 0 1 0 2 2 0 0 0 2 4 1 0 0 0 1 0 0 0 0 0 0 13 0 1601.8633 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8;Q8N7L7 B2RWN5 1253 1265 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 1.2263E-11 145.99 6 0.92775 1.2013 14.544 3 Median 0.92775 1.2013 14.544 3 0 Median NaN NaN NaN 0 0 Median 16233000 7664600 8568800 16233000 7664600 8568800 0 0 0 9645 748 9907 34633;34634;34635;34636;34637;34638 52161;52162;52163;52164;52165;52166;52167;52168 52164 8 QLIPIFTDVALK QNGTVYTCSSDGKVRQLIPIFTDVALKFEH KVRQLIPIFTDVALKFEHQLIKLSDVFGSV R Q L L K F 1 0 0 1 0 1 0 0 0 2 2 1 0 1 1 0 1 0 0 1 0 0 12 0 1356.8017 Q9UKN8;Q05CN7 Q9UKN8 449 460 GTF3C4 General transcription factor 3C polypeptide 4 yes no 2 0.0017298 99.973 4 0.59003 0.74733 15.31 4 Median 0.59003 0.74733 15.31 4 0 Median NaN NaN NaN 0 0 Median 23602000 14225000 9376900 23602000 14225000 9376900 0 0 0 9646 1789 9908 34639;34640;34641;34642 52169;52170;52171;52172;52173 52171 5 QLIVGVNK QTREHALLAYTLGVKQLIVGVNKMDSTEPP AYTLGVKQLIVGVNKMDSTEPPYSQKRYEE K Q L N K M 0 0 1 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 2 0 0 8 0 869.53345 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;P68104;A8K9C4;Q5VTE0;Q96RE1;Q53GE9;Q53GA1;Q53G85;B4DV42;Q8IUB0;Q53HR1;Q9NZS6;A0A087WV01;Q9H2I7;Q53G89;Q16577;A9X7H1;Q05639;Q59GP5 Q6IPT9 147 154 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1;EEF1A2 Elongation factor 1-alpha;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 yes no 1;2 2.4042E-05 139.54 5 2 0.4264 0.55736 129.8 6 Median 0.4096 0.53912 4.0356 4 0 Median 4.1551 6.6455 1.6192 2 0 Median 2120600000 1448000000 672620000 2007700000 1424400000 583300000 112940000 23620000 89316000 9647 1421 9909 34643;34644;34645;34646;34647;34648;34649 52174;52175;52176;52177;52178;52179;52180;52181;52182;52183 52177 10 QLLCGAAIGTHEDDK KKNRDYPLASKDAKKQLLCGAAIGTHEDDK QLLCGAAIGTHEDDKYRLDLLAQAGVDVVV K Q L D K Y 2 0 0 2 1 1 1 2 1 1 2 1 0 0 0 0 1 0 0 0 0 0 15 0 1626.7672 P12268;H0Y4R1;B7Z1G4;Q6QE17;E7ETK5;Q6RUP9 P12268 243 257 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2;3 1.4533E-13 154.36 6 1 0.37578 0.46481 11.374 3 Median 0.37578 0.46481 11.374 3 0 Median NaN NaN NaN 0 0 Median 52037000 36304000 15733000 47981000 36304000 11677000 4055600 0 4055600 9648 1261 9910 34650;34651;34652;34653;34654;34655;34656 52184;52185;52186;52187;52188;52189;52190 52185 7 QLLDEDSDPMLSPR SDEAHLSPQAGRLIRQLLDEDSDPMLSPRF RQLLDEDSDPMLSPRFYAYGQSRQYLDDTE R Q L P R F 0 1 0 3 0 1 1 0 0 0 3 0 1 0 2 2 0 0 0 0 0 0 14 0 1614.7559 E9PGM7;O94988 E9PGM7 192 205 FAM13A Protein FAM13A yes no 2 0.00081039 107.55 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9649 1027 9911 34657 52191 52191 370 1 QLLEEELAR LIRLRAETEQGEQQRQLLEEELARLQREAA QGEQQRQLLEEELARLQREAAAATQKRQEL R Q L A R L 1 1 0 0 0 1 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1099.5873 Q15149 Q15149 1867 1875 PLEC Plectin yes yes 2 0.0012631 101.54 2 0.9921 1.3235 3.7336 2 Median 0.9921 1.3235 3.7336 2 0 Median NaN NaN NaN 0 0 Median 17257000 9793200 7464100 17257000 9793200 7464100 0 0 0 9650 1507 9912 34658;34659 52192;52193 52192 2 QLLGEHLTAILQK LDHSTQKPLIACVEKQLLGEHLTAILQKGL EKQLLGEHLTAILQKGLDHLLDENRVPDLA K Q L Q K G 1 0 0 0 0 2 1 1 1 1 4 1 0 0 0 0 1 0 0 0 0 0 13 0 1462.8508 Q13619;A0A0A0MR50;B2RBV7;K4DI93;Q13620 Q13619 293 305 CUL4A;CUL4B Cullin-4A;Cullin-4B yes no 3 0.021784 52.79 2 0.92932 1.1609 9.3865 2 Median 0.92932 1.1609 9.3865 2 0 Median NaN NaN NaN 0 0 Median 21249000 9802100 11447000 21249000 9802100 11447000 0 0 0 9651 1474 9913 34660;34661 52194;52195 52194 2 QLLLESQSQLDAAK SAECQNYAKEVAGLRQLLLESQSQLDAAKS RQLLLESQSQLDAAKSEAQKQSDELALVRQ R Q L A K S 2 0 0 1 0 3 1 0 0 0 4 1 0 0 0 2 0 0 0 0 0 0 14 0 1542.8253 A0A0A0MRV0;A7BI36;Q9P2E9;F8W7S5;A1A5C4;A0A087WVV2;A1A5C5;B3KSG1;A0A087WU26 A0A0A0MRV0 1228 1241 RRBP1 Ribosome-binding protein 1 yes no 2 0.032649 38.402 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1703300 0 1703300 1703300 0 1703300 0 0 0 9652 390 9914 34662 52196 52196 1 QLLLTPNAVVIVEDAK PVVKYDRKGYKPRSRQLLLTPNAVVIVEDA LLLTPNAVVIVEDAKVKQRIDYANLTGISV R Q L A K V 2 0 1 1 0 1 1 0 0 1 3 1 0 0 1 0 1 0 0 3 0 0 16 0 1721.9927 F5H6E2;B7Z3E5;O00159;D3DTH7 F5H6E2 915 930 MYO1C Unconventional myosin-Ic yes no 2 2.3382E-18 160.86 4 0.73276 0.92008 6.4024 4 Median 0.73276 0.92008 6.4024 4 0 Median NaN NaN NaN 0 0 Median 58194000 33980000 24214000 58194000 33980000 24214000 0 0 0 9653 905 9915 34663;34664;34665;34666 52197;52198;52199;52200 52198 4 QLLQANPILEAFGNAK ASSHKSKKDQGELERQLLQANPILEAFGNA LLQANPILEAFGNAKTVKNDNSSRFGKFIR R Q L A K T 3 0 2 0 0 2 1 1 0 1 3 1 0 1 1 0 0 0 0 0 0 0 16 0 1725.9414 A0A024R1N1;P35579;Q86XU5;B4E3S1;A0A0U4BW16;Q7Z406;M0QY43 A0A024R1N1 210 225 MYH9;MYH14 Myosin-9;Myosin-14 no no 2 2.8611E-73 245.13 4 1.0425 1.3477 2.9187 4 Median 1.0425 1.3477 2.9187 4 0 Median NaN NaN NaN 0 0 Median 276900000 135390000 141520000 276900000 135390000 141520000 0 0 0 9654 61;490;1615 9916 34667;34668;34669;34670 52201;52202;52203;52204;52205;52206;52207;52208;52209 52204 9 QLLSYITK PELGVEEEPFHTIMKQLLSYITKDKQTESL PFHTIMKQLLSYITKDKQTESLVEKLCQRF K Q L T K D 0 0 0 0 0 1 0 0 0 1 2 1 0 0 0 1 1 0 1 0 0 0 8 0 964.55933 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1192 1199 NCAPD2 Condensin complex subunit 1 yes no 2 0.0099556 74.255 2 1 0.68288 0.84222 11.333 3 Median 0.69184 0.85648 2.3738 2 0 Median 0.46564 0.70535 NaN 1 0 Median 59043000 35949000 23095000 44860000 26390000 18470000 14183000 9558600 4624600 9655 757 9917 34671;34672;34673 52210;52211;52212 52210 3 QLNPESIRPGGPGGLSR SWWRPEPTMPPTSWRQLNPESIRPGGPGGL NPESIRPGGPGGLSRSLGREEEEDEEEELE R Q L S R S 0 2 1 0 0 1 1 4 0 1 2 0 0 0 3 2 0 0 0 0 0 0 17 1 1733.9173 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 139 155 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 3 8.0379E-06 63.894 2 0.7669 1.0081 11.025 2 Median 0.7669 1.0081 11.025 2 0 Median NaN NaN NaN 0 0 Median 19685000 10530000 9154500 19685000 10530000 9154500 0 0 0 9656 93 9918 34674;34675 52213;52214;52215 52215 3 QLPHFTSEHIK QMVTQAMWSKDSYLKQLPHFTSEHIKRCTD SYLKQLPHFTSEHIKRCTDKGVESVFDIME K Q L I K R 0 0 0 0 0 1 1 0 2 1 1 1 0 1 1 1 1 0 0 0 0 0 11 0 1335.6935 O75643;A4FU77;B4E150;B4E0P5;Q9UNV9;A2RRQ7;Q7L5W4;Q9P172 O75643 1962 1972 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 0.02078 57.019 1 0.82552 1.045 NaN 1 Median 0.82552 1.045 NaN 1 0 Median NaN NaN NaN 0 0 Median 7934100 3116500 4817600 7934100 3116500 4817600 0 0 0 9657 1206 9919 34676 52216 52216 1 QLPLLTSALHGLQQQHPAFSGVAR LRDTAASLRLERDTRQLPLLTSALHGLQQQ HGLQQQHPAFSGVARLAKRWVRAQLLGEGF R Q L A R L 3 1 0 0 0 4 0 2 2 0 5 0 0 1 2 2 1 0 0 1 0 0 24 0 2568.3925 Q9H6R4;A0A0A0MRW6;B4DF80;B3KPN5 Q9H6R4 833 856 NOL6 Nucleolar protein 6 yes no 4 3.8038E-06 49.287 2 2 0.87144 1.2503 19.283 4 Median 0.99958 1.3311 11.306 2 0 Median 0.7115 1.0785 23.346 2 0 Median 70127000 33174000 36954000 35802000 16096000 19706000 34325000 17078000 17248000 9658 1738 9920 34677;34678;34679;34680 52217;52218;52219;52220;52221;52222;52223;52224;52225 52224 9 QLQAESVSEVVVNR WGHVELLEVLQARVRQLQAESVSEVVVNRV RQLQAESVSEVVVNRVDVARLPECGSGDGS R Q L N R V 1 1 1 0 0 2 2 0 0 0 1 0 0 0 0 2 0 0 0 4 0 0 14 0 1556.8158 B4DZE5;O00411;Q4G0F4;K7EMH3 B4DZE5 72 85 POLRMT DNA-directed RNA polymerase, mitochondrial;DNA-directed RNA polymerase yes no 2 0.014461 48.741 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9659 876 9921 34681 52226 52226 1 QLQAIEFNK KLTNAEGVEFKLSKKQLQAIEFNKALLAMY FKLSKKQLQAIEFNKALLAMYTNQAEQCRK K Q L N K A 1 0 1 0 0 2 1 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 9 0 1089.5819 V9HWK0;O76094;Q86X80;A0PJJ5;Q71V07;Q0D2M6 V9HWK0 302 310 HEL103;SRP72 Signal recognition particle subunit SRP72 yes no 2 0.04662 75.043 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 834900 0 834900 834900 0 834900 0 0 0 9660 1211 9922 34682 52227 52227 1 QLQEERPELSESELTR RPVSAMFIFSEEKRRQLQEERPELSESELT LQEERPELSESELTRLLARMWNDLSEKKKA R Q L T R L 0 2 0 0 0 2 5 0 0 0 3 0 0 0 1 2 1 0 0 0 0 0 16 1 1942.9596 E9PKP7;P17480;A8K962;O00164;B4DLB0;E9PLT2 E9PKP7 387 402 UBTF Nucleolar transcription factor 1 yes no 2;3 2.9388E-25 128.9 5 2 0.77467 1.1893 9.1108 7 Median 0.82537 1.1182 9.3132 5 0 Median 0.77107 1.2309 4.0473 2 0 Median 470270000 260470000 209800000 326810000 176540000 150280000 143460000 83937000 59521000 9661 1039 9923 34683;34684;34685;34686;34687;34688;34689 52228;52229;52230;52231;52232;52233;52234;52235;52236;52237;52238;52239;52240;52241 52234 14 QLQLAQEAAQK EARRLRERAEQESARQLQLAQEAAQKRLQA ESARQLQLAQEAAQKRLQAEEKAHAFAVQQ R Q L Q K R 3 0 0 0 0 4 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1226.6619 Q15149 Q15149 2172 2182 PLEC Plectin yes yes 2 9.068E-26 213.85 4 0.92212 1.1445 15.259 4 Median 0.92212 1.1445 15.259 4 0 Median NaN NaN NaN 0 0 Median 66988000 34451000 32537000 66988000 34451000 32537000 0 0 0 9662 1507 9924 34690;34691;34692;34693 52242;52243;52244;52245;52246;52247;52248 52244 7 QLQQAQAAGAEQEVEK GELAKRSERRAEAEKQLQQAQAAGAEQEVE LQQAQAAGAEQEVEKFTKRLVKVTKQHNDE K Q L E K F 4 0 0 0 0 5 3 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 16 0 1726.8486 B4DWZ4;Q6FHX6;P39748;F5H1Y3 B4DWZ4 74 89 FEN1 Flap endonuclease 1 yes no 2 5.1953E-114 284.12 4 2 0.54746 0.69453 60.234 6 Median 0.45188 0.57153 19.182 4 0 Median 1.3411 1.922 1.7744 2 0 Median 35785000 21218000 14567000 25665000 16739000 8926600 10120000 4478900 5640600 9663 867 9925 34694;34695;34696;34697;34698;34699 52249;52250;52251;52252;52253;52254;52255;52256;52257;52258;52259;52260;52261;52262 52251 14 QLSALHR DVMRFLLRVRCWQYRQLSALHRAPRPTRPD RVRCWQYRQLSALHRAPRPTRPDKARRLGY R Q L H R A 1 1 0 0 0 1 0 0 1 0 2 0 0 0 0 1 0 0 0 0 0 0 7 0 823.46644 A0A024R2Q4;P61313;E7EQV9;B4DLP4;E7ENU7;E7EX53;B4DEN1;E7ERA2;Q76N55 A0A024R2Q4 32 38 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 2 0.015274 89.673 2 1 0.74874 0.99872 8.5054 3 Median 0.75885 1.0261 3.8216 2 0 Median 0.57593 0.89231 NaN 1 0 Median 269510000 155180000 114330000 242210000 137970000 104240000 27295000 17206000 10089000 9664 92 9926 34700;34701;34702 52263;52264;52265;52266;52267;52268 52263 6 QLSDGIQELQQSLNQDFHQK ERLDSVPVEEQEEFKQLSDGIQELQQSLNQ IQELQQSLNQDFHQKTIVLQEGNSQKKSNI K Q L Q K T 0 0 1 2 0 6 1 1 1 1 3 1 0 1 0 2 0 0 0 0 0 0 20 0 2355.1455 Q9BZD4;A0A024R8Y0;E9PQC4;B1AQT4;E9PP32 Q9BZD4 182 201 NUF2;CDCA1 Kinetochore protein Nuf2 yes no 3 0.0049579 68.261 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3600400 3600400 0 3600400 3600400 0 0 0 0 9665 1727 9927 34703;34704 52269;52270 52270 2 QLSESFK KSTPSRGSSSKSSSRQLSESFKSKEFVSSD SSSKSSSRQLSESFKSKEFVSSDESSSGEN R Q L F K S 0 0 0 0 0 1 1 0 0 0 1 1 0 1 0 2 0 0 0 0 0 0 7 0 837.42323 A0A024R4Z6;Q08945 A0A024R4Z6 655 661 SSRP1 FACT complex subunit SSRP1 yes no 2 0.018412 79.451 1 1 0.78134 0.9943 NaN 1 Median 0.78134 0.9943 NaN 1 0 Median NaN NaN NaN 0 0 Median 81564000 40881000 40683000 69053000 40881000 28172000 12511000 0 12511000 9666 132 9928 34705;34706 52271;52272;52273 52271 3 QLSEVFIQLPSR IVDAVIKYKDSSSGRQLSEVFIQLPSRKEL SGRQLSEVFIQLPSRKELPEYYELIRKPVD R Q L S R K 0 1 0 0 0 2 1 0 0 1 2 0 0 1 1 2 0 0 0 1 0 0 12 0 1415.7773 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;B4E0F1;B4DSI8;B3KNW7;A0A0U1RRG6;A0A0U1RRF5;A0A0U1RRD6;A0A0U1RRF8;A0A0A0MSS5;F6UH26;A0A0U1RQU0;A0A0U1RR09;F6XE55;A0A0U1RQW7;A0A0U1RRN2;B1ALG1;A0A0U1RR83;A0A0U1RQX3;F6T8Q0;B1ALG2;A0A0U1RR26;B4DNT1;Q8N9Q1;B1ALF6;P51531;F6VDE0;B4DSC8 A7E2E1 1480 1491 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 0.0092681 79.659 1 0.83178 1.1794 NaN 1 Median 0.83178 1.1794 NaN 1 0 Median NaN NaN NaN 0 0 Median 1766200 951810 814430 1766200 951810 814430 0 0 0 9667 403;1362 9929 34707 52274 52274 1 QLSLAVK ______________________________ MHPKETTRQLSLAVKDGLIVETLTVGCKGS R Q L V K D 1 0 0 0 0 1 0 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 7 0 757.46979 Q5BJG6;B7Z3W2;J3QKD2;Q15326;Q6PJR5;A0A0A0MRY2;B0QZE2;B7Z2J6;E7ENI9;Q5UGI2;E9PE09;E7EV75 Q5BJG6 15 21 ZMYND11 Zinc finger MYND domain-containing protein 11 yes no 2 0.02391 70.912 1 0.89916 1.1476 NaN 1 Median 0.89916 1.1476 NaN 1 0 Median NaN NaN NaN 0 0 Median 14210000 8298500 5911600 14210000 8298500 5911600 0 0 0 9668 906 9930 34708 52275 52275 1 QLSLDVR HSFVFTRGCTGRNIRQLSLDVRRVMEPLTA GCTGRNIRQLSLDVRRVMEPLTASRLQVRK R Q L V R R 0 1 0 1 0 1 0 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 7 0 829.46577 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55 A0A0A6YYI3 45 51 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 0.034331 58.981 1 0.6919 0.91889 NaN 1 Median 0.6919 0.91889 NaN 1 0 Median NaN NaN NaN 0 0 Median 14358000 8668400 5689100 14358000 8668400 5689100 0 0 0 9669 408 9931 34709 52276 52276 1 QLSSEELEQFQK KRLKGAFKAVMTSIKQLSSEELEQFQKTGT SIKQLSSEELEQFQKTGTIVVEGHELHDED K Q L Q K T 0 0 0 0 0 3 3 0 0 0 2 1 0 1 0 2 0 0 0 0 0 0 12 0 1464.7096 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z355;Q7Z3U5;B4DVX2;Q6P0M4;Q7L4K8;Q9P1N9 Q59G75 935 946 IARS;DKFZp686L17145;DKFZp686L0869 Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.042054 33.088 1 1.6432 2.2915 NaN 1 Median NaN NaN NaN 0 0 Median 1.6432 2.2915 NaN 1 0 Median 3825100 1594300 2230800 0 0 0 3825100 1594300 2230800 9670 1334 9932 34710 52277 52277 1 QLSSGVSEIR SPAVAAPAYSRALSRQLSSGVSEIRHTADR RALSRQLSSGVSEIRHTADRWRVSLDVNHF R Q L I R H 0 1 0 0 0 1 1 1 0 1 1 0 0 0 0 3 0 0 0 1 0 0 10 0 1074.5669 V9HW43;P04792;B4DL87;F8WE04 V9HW43 80 89 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 2 3.9485E-11 136.21 4 2 0.34947 0.47876 115.7 6 Median 0.3268 0.45158 6.3484 4 0 Median 2.7316 4.3055 0.0074632 2 0 Median 323150000 213020000 110130000 257540000 195330000 62214000 65608000 17689000 47918000 9671 1232 9933 34711;34712;34713;34714;34715;34716 52278;52279;52280;52281;52282;52283;52284;52285;52286 52284 9 QLSVSLLCYNFLR RKAHELKLLSECQYKQLSVSLLCYNFLREA YKQLSVSLLCYNFLREALEVAVAGTELFRD K Q L L R E 0 1 1 0 1 1 0 0 0 0 4 0 0 1 0 2 0 0 1 1 0 0 13 0 1611.8443 B3KQ21;Q9NYH9;B3KX32 B3KQ21 374 386 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 7.0164E-06 90.108 1 1.0337 1.351 NaN 1 Median 1.0337 1.351 NaN 1 0 Median NaN NaN NaN 0 0 Median 7752500 3710200 4042200 7752500 3710200 4042200 0 0 0 9672 768 9934 34717 52287;52288 52288 2 QLTQTTHTDKVPGDEDK PLGKRDIVEELSALKQLTQTTHTDKVPGDE TQTTHTDKVPGDEDKGINVFRETAKQKLDP K Q L D K G 0 0 0 3 0 2 1 1 1 0 1 2 0 0 1 0 4 0 0 1 0 0 17 1 1911.9174 P46013 P46013 2139 2155 MKI67 Antigen KI-67 yes yes 2;3;4 1.207E-97 279.65 10 2 0.91122 1.116 15.109 11 Median 0.90903 1.1047 7.8622 9 0 Median 0.96213 1.5459 0.94657 2 0 Median 597550000 304900000 292650000 530780000 270650000 260130000 66771000 34248000 32522000 9673 1342 9935 34718;34719;34720;34721;34722;34723;34724;34725;34726;34727;34728;34729 52289;52290;52291;52292;52293;52294;52295;52296;52297;52298;52299;52300;52301;52302;52303;52304;52305;52306;52307;52308;52309;52310;52311 52292 23 QLTSYVGSVRPLVTELDPDAPIR KSVYWENTLHTLKQRQLTSYVGSVRPLVTE VRPLVTELDPDAPIRQKMPLDDLDREDEVR R Q L I R Q 1 2 0 2 0 1 1 1 0 1 3 0 0 0 3 2 2 0 1 3 0 0 23 1 2525.349 P57740 P57740 308 330 NUP107 Nuclear pore complex protein Nup107 yes yes 3 1.6406E-05 46.833 3 0.53791 0.69662 18.144 3 Median 0.53791 0.69662 18.144 3 0 Median NaN NaN NaN 0 0 Median 13258000 8534100 4723800 13258000 8534100 4723800 0 0 0 9674 1384 9936 34730;34731;34732 52312;52313;52314;52315 52314 4 QLVAEQVTYQR SFRRDNNELLLFILKQLVAEQVTYQRNRFG FILKQLVAEQVTYQRNRFGAQQDTIEVPEK K Q L Q R N 1 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 1 0 1 2 0 0 11 0 1333.699 B4DSV5;B3KXZ4;H0Y8E6;P49736;B7Z8Z6;Q9BWF4 B4DSV5 708 718 MCM2 DNA helicase;DNA replication licensing factor MCM2 yes no 2 0.0010524 84.213 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2326800 2326800 0 2326800 2326800 0 0 0 0 9675 790 9937 34733 52316 52316 1 QLYEEEIR ESRLEGLTDEINFLRQLYEEEIRELQSQIS DEINFLRQLYEEEIRELQSQISDTSVVLSM R Q L I R E 0 1 0 0 0 1 3 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 8 0 1078.5295 CON__P05787;P05787;Q969I0;F8VUG2;Q7L4M3;CON__Q9H552;F8W1U3 CON__P05787 226 233 KRT8 Keratin, type II cytoskeletal 8 no no 2 0.0065732 104.37 2 2 0.66443 0.90265 137.87 4 Median 0.1953 0.26364 16.067 2 0 Median 2.0108 2.8548 4.8491 2 0 Median 45212000 29822000 15390000 31108000 25335000 5773000 14104000 4487500 9616600 + 9676 955;1068 9938 34734;34735;34736;34737 52317;52318;52319;52320 52318 4 QLYEEEIRELQSQISDTSVVLSMDNSR ESRLEGLTDEINFLRQLYEEEIRELQSQIS QISDTSVVLSMDNSRSLDMDSIIAEVKAQY R Q L S R S 0 2 1 2 0 3 4 0 0 2 3 0 1 0 0 5 1 0 1 2 0 0 27 1 3168.5245 CON__P05787;P05787;Q969I0;F8VUG2;Q7L4M3 CON__P05787 226 252 KRT8 Keratin, type II cytoskeletal 8 yes no 3 0.0013272 63.115 2 0.30127 0.41338 NaN 1 Median 0.30127 0.41338 NaN 1 0 Median NaN NaN NaN 0 0 Median 3404600 3050700 353900 3404600 3050700 353900 0 0 0 + 9677 955 9939;9940 34738;34739 52321;52322;52323 52322 328 3 QLYEYLFNATR STSVESLLSICPEAKQLYEYLFNATRSYAP PEAKQLYEYLFNATRSYAPAEIFLPKGRSN K Q L T R S 1 1 1 0 0 1 1 0 0 0 2 0 0 1 0 0 1 0 2 0 0 0 11 0 1416.7038 D6RG30;Q2TB18 D6RG30 627 637 ASTE1 Protein asteroid homolog 1 yes no 3 0.00097238 55.353 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9678 994 9941 34740 52324 52324 1 QLYHLGVVEAYSGLTK NKKLAAQSCALSLVRQLYHLGVVEAYSGLT LYHLGVVEAYSGLTKKKEGETVEPYKVNLS R Q L T K K 1 0 0 0 0 1 1 2 1 0 3 1 0 0 0 1 1 0 2 2 0 0 16 0 1776.941 Q08211;Q58F26;Q6PJK6 Q08211 249 264 DHX9 ATP-dependent RNA helicase A yes no 2;3 8.4645E-09 93.226 5 2 0.64052 0.83891 11.808 6 Median 0.71839 0.90135 13.221 4 0 Median 0.50533 0.78163 0.45687 2 0 Median 198810000 123050000 75761000 155440000 93996000 61444000 43374000 29057000 14318000 9679 1448 9942 34741;34742;34743;34744;34745;34746;34747 52325;52326;52327;52328;52329;52330;52331;52332;52333;52334;52335;52336;52337;52338 52329 14 QLYLNPK SKEPGVREAVLNAYRQLYLNPKGDSARAKA EAVLNAYRQLYLNPKGDSARAKAQALIQNL R Q L P K G 0 0 1 0 0 1 0 0 0 0 2 1 0 0 1 0 0 0 1 0 0 0 7 0 874.49125 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 699 705 NCAPD2 Condensin complex subunit 1 yes no 2 0.021667 74.396 1 0.75392 0.94156 NaN 1 Median 0.75392 0.94156 NaN 1 0 Median NaN NaN NaN 0 0 Median 51174000 27975000 23199000 51174000 27975000 23199000 0 0 0 9680 757 9943 34748 52339;52340 52339 2 QLYQDYSDVQAQEPNVK KSSLRNAAYFLSNLKQLYQDYSDVQAQEPN YQDYSDVQAQEPNVKETYDSSSLPALLFKA K Q L V K E 1 0 1 2 0 4 1 0 0 0 1 1 0 0 1 1 0 0 2 2 0 0 17 0 2023.9487 A8K8D2;Q71F23 A8K8D2 363 379 CENPU Centromere protein U yes no 2 9.4226E-06 67.456 1 0.67744 0.86304 NaN 1 Median 0.67744 0.86304 NaN 1 0 Median NaN NaN NaN 0 0 Median 2919800 1592700 1327000 2919800 1592700 1327000 0 0 0 9681 639 9944 34749 52341 52341 1 QLYQTLTDYDIR TPALVFEHVNNTDFKQLYQTLTDYDIRFYM DFKQLYQTLTDYDIRFYMYEILKALDYCHS K Q L I R F 0 1 0 2 0 2 0 0 0 1 2 0 0 0 0 0 2 0 2 0 0 0 12 0 1527.7569 E7EU96;B5BUH5;B2R6D7;Q5U5J2;P68400;Q8NEV1 E7EU96 123 134 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 2 9.9647E-06 123.79 3 0.79243 1.0926 2.5758 2 Median 0.79243 1.0926 2.5758 2 0 Median NaN NaN NaN 0 0 Median 10705000 4428600 6276800 10705000 4428600 6276800 0 0 0 9682 697 9945 34750;34751;34752 52342;52343;52344 52342 2 QMFFVISLDPPIK TTVLRLFLLPHKDQRQMFFVISLDPPIKQG QRQMFFVISLDPPIKQGQTRYHFLILLFSK R Q M I K Q 0 0 0 1 0 1 0 0 0 2 1 1 1 2 2 1 0 0 0 1 0 0 13 0 1533.8265 A0A024R4Z6;Q08945;E9PMD4 A0A024R4Z6 252 264 SSRP1 FACT complex subunit SSRP1 yes no 2 8.8698E-05 108.37 7 0.86046 1.1263 17.127 5 Median 0.86046 1.1263 17.127 5 0 Median NaN NaN NaN 0 0 Median 27155000 16940000 10214000 27155000 16940000 10214000 0 0 0 9683 132 9946;9947 34753;34754;34755;34756;34757;34758;34759 52345;52346;52347;52348;52349;52350;52351;52352;52353;52354 52348 70 10 QMVIDVLHPGK IRTRKFMTNRLLQRKQMVIDVLHPGKATVP LQRKQMVIDVLHPGKATVPKTEIREKLAKM K Q M G K A 0 0 0 1 0 1 0 1 1 1 1 1 1 0 1 0 0 0 0 2 0 0 11 0 1235.6696 E7ETK0;A0A087WUS0;P62847 E7ETK0 22 32 RPS24 40S ribosomal protein S24 yes no 3 0.015275 46.796 3 0.95903 1.1987 4.5417 3 Plateau 0.95903 1.1987 4.5417 3 0 Plateau NaN NaN NaN 0 0 Median 101400000 52844000 48555000 101400000 52844000 48555000 0 0 0 9684 344 9948 34760;34761;34762 52355;52356;52357 52357 3 QNAEQHVTQLMSTEPLPR QCQLVPVVEIGISERQNAEQHVTQLMSTEP EQHVTQLMSTEPLPRTLSPTPASATAPTSQ R Q N P R T 1 1 1 0 0 3 2 0 1 0 2 0 1 0 2 1 2 0 0 1 0 0 18 0 2078.0215 Q9NQS7;B3KPD3 Q9NQS7 177 194 INCENP Inner centromere protein yes no 3 3.782E-05 61.648 2 0.93892 1.2998 NaN 1 Median 0.93892 1.2998 NaN 1 0 Median NaN NaN NaN 0 0 Median 11345000 5016900 6328500 11345000 5016900 6328500 0 0 0 9685 1752 9949 34763;34764 52358;52359 52359 2 QNIFEFFER SDENGSTTPKVKKDKQNIFEFFERQTLLLR KVKKDKQNIFEFFERQTLLLRPGGKWYDLE K Q N E R Q 0 1 1 0 0 1 2 0 0 1 0 0 0 3 0 0 0 0 0 0 0 0 9 0 1228.5877 B2R5U7;C9J9W7;Q03701 B2R5U7 164 172 CEBPZ CCAAT/enhancer-binding protein zeta no no 2 5.0294E-05 130.75 4 0.73469 0.99035 5.9716 4 Median 0.73469 0.99035 5.9716 4 0 Median NaN NaN NaN 0 0 Median 21119000 12752000 8367400 21119000 12752000 8367400 0 0 0 9686 693;1441 9950 34765;34766;34767;34768 52360;52361;52362;52363;52364 52360 5 QNIGVATFIGLDK DSIDIAQECVNFLKRQNIGVATFIGLDKMA KRQNIGVATFIGLDKMAVWAKKMTEIQTPE R Q N D K M 1 0 1 1 0 1 0 2 0 2 1 1 0 1 0 0 1 0 0 1 0 0 13 0 1374.7507 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 661 673 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.2033E-09 108.9 4 2 0.63493 0.84031 7.4992 6 Median 0.67322 0.84588 9.0114 4 0 Median 0.54131 0.83057 5.8342 2 0 Median 125690000 77565000 48124000 83854000 50677000 33177000 41835000 26888000 14947000 9687 1760 9951 34769;34770;34771;34772;34773;34774 52365;52366;52367;52368;52369;52370;52371 52367 7 QNLAEMGLAVDPNR CSHIRHAWDHAKSVRQNLAEMGLAVDPNRA RQNLAEMGLAVDPNRAVPLRKRKVKAMEVD R Q N N R A 2 1 2 1 0 1 1 1 0 0 2 0 1 0 1 0 0 0 0 1 0 0 14 0 1526.7511 Q9Y3C1;D6RIC3;A0A0C4DGU5;A0A087X2G6;D6RC60;B4E098 Q9Y3C1 51 64 NOP16 Nucleolar protein 16 yes no 2 0.00019949 84.479 2 2 0.50822 0.7554 NaN 1 Median NaN NaN NaN 0 0 Median 0.50822 0.7554 NaN 1 0 Median 24088000 18865000 5223200 2498100 2498100 0 21590000 16367000 5223200 9688 1817 9952;9953 34775;34776;34777;34778 52372;52373;52374;52375 52375 843 3 QNLEPLFEQYINNLRR TKWTLLQEQGTKTVRQNLEPLFEQYINNLR NLEPLFEQYINNLRRQLDSIVGERGRLDSE R Q N R R Q 0 2 3 0 0 2 2 0 0 1 3 0 0 1 1 0 0 0 1 0 0 0 16 1 2046.0647 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;B4DRY0;CON__P04259;B4DKV4;CON__P13647;P13647;B4E1T1;F8W0C6 B4DRR0 179 194 KRT6A;KRT6C;KRT5 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 5 no no 3 7.7749E-07 93.348 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20102000 20102000 0 20102000 20102000 0 0 0 0 + 9689 459;953;961 9954 34779;34780 52376;52377 52377 2 QNLIEELRK KVSLTKTAKKGLELKQNLIEELRKCVDTYK KGLELKQNLIEELRKCVDTYKYLFIFSVAN K Q N R K C 0 1 1 0 0 1 2 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 9 1 1141.6455 A0A024RAE1;Q9UKD2;B4DHZ2 A0A024RAE1 24 32 C1orf33;MRTO4 mRNA turnover protein 4 homolog yes no 2;3 0.0051451 78.264 4 0.72582 0.98552 6.3566 4 Median 0.72582 0.98552 6.3566 4 0 Median NaN NaN NaN 0 0 Median 26697000 13674000 13023000 26697000 13674000 13023000 0 0 0 9690 240 9955 34781;34782;34783;34784 52378;52379;52380;52381;52382;52383 52381 5 QNLLSQSHAYQQFLR LDTGWNELHKMWENRQNLLSQSHAYQQFLR QNLLSQSHAYQQFLRDTKQAEAFLNNQEYV R Q N L R D 1 1 1 0 0 4 0 0 1 0 3 0 0 1 0 2 0 0 1 0 0 0 15 0 1831.9329 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24 B2ZZ89 1162 1176 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 0.0005973 106.58 3 0.8171 1.1044 10.212 3 Median 0.8171 1.1044 10.212 3 0 Median NaN NaN NaN 0 0 Median 40376000 21674000 18701000 40376000 21674000 18701000 0 0 0 9691 346 9956 34785;34786;34787 52384;52385;52386 52385 3 QNLLSVGDYR LKMKPGRPRIKKDEKQNLLSVGDYRHRRTE KKDEKQNLLSVGDYRHRRTEQEEDEELLTE K Q N Y R H 0 1 1 1 0 1 0 1 0 0 2 0 0 0 0 1 0 0 1 1 0 0 10 0 1163.5935 O60264;B7ZAX9;B4DZC0;Q4W5G3 O60264 133 142 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 0.00087672 99.013 3 2 2.0842 2.9096 9.5999 5 Median 2.0057 2.7335 4.3504 3 0 Median 2.107 3.2714 0.66297 2 0 Median 113970000 37411000 76559000 67828000 22052000 45777000 46142000 15359000 30783000 9692 1189 9957 34788;34789;34790;34791;34792 52387;52388;52389;52390;52391;52392 52388 6 QNLVPFR RCIAALRQNQQNRSKQNLVPFRDSKLTRVF QNQQNRSKQNLVPFRDSKLTRVFQGFFTGR K Q N F R D 0 1 1 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 7 0 872.48684 O95235 O95235 454 460 KIF20A Kinesin-like protein KIF20A yes yes 2 0.01841 79.454 4 1 0.72106 0.98279 17.094 5 Median 0.73631 0.99651 4.8653 4 0 Median 0.46755 0.69334 NaN 1 0 Median 70942000 37207000 33735000 56449000 27890000 28559000 14493000 9317000 5176200 9693 1215 9958 34793;34794;34795;34796;34797 52393;52394;52395;52396;52397;52398;52399 52398 7 QNRPIPQWIR HKTFKIKQFLAKKQKQNRPIPQWIRMKTGN AKKQKQNRPIPQWIRMKTGNKIRYNSKRRH K Q N I R M 0 2 1 0 0 2 0 0 0 2 0 0 0 0 2 0 0 1 0 0 0 0 10 1 1306.7258 Q59GN2;P62891 Q59GN2 19 28 RPL39P5;RPL39 Putative 60S ribosomal protein L39-like 5;60S ribosomal protein L39 yes no 3 0.00055357 61.56 2 0.334 0.50851 6.8749 2 Median NaN NaN NaN 0 0 Median 0.334 0.50851 6.8749 2 0 Median 50208000 36930000 13278000 0 0 0 50208000 36930000 13278000 9694 1414 9959 34798;34799 52400;52401;52402;52403 52401 4 QNTAFQDLSINSADK YGTKASGNKTVFKSKQNTAFQDLSINSADK QNTAFQDLSINSADKIHITRSHIMGAETHI K Q N D K I 2 0 2 2 0 2 0 0 0 1 1 1 0 1 0 2 1 0 0 0 0 0 15 0 1650.7849 Q8NG31;E9PPJ1 Q8NG31 394 408 CASC5 Protein CASC5 no no 2 2.9108E-07 133.88 3 0.74798 0.97423 NaN 1 Median 0.74798 0.97423 NaN 1 0 Median NaN NaN NaN 0 0 Median 6026000 5234300 791700 6026000 5234300 791700 0 0 0 9695 1656 9960 34800;34801;34802 52404;52405;52406 52404 3 QPAEHLQLLEEAAK DLASFDEDLADYLYKQPAEHLQLLEEAAKE KQPAEHLQLLEEAAKEVADEVTRPRPSGEE K Q P A K E 3 0 0 0 0 2 3 0 1 0 3 1 0 0 1 0 0 0 0 0 0 0 14 0 1575.8257 Q53FG5;B1AHB0;A8K521;P33992;B1AHA9 Q53FG5 91 104 MCM5 DNA helicase;DNA replication licensing factor MCM5 yes no 3 0.0033032 69.314 1 0.21216 0.26802 NaN 1 Median 0.21216 0.26802 NaN 1 0 Median NaN NaN NaN 0 0 Median 3386700 1965600 1421100 3386700 1965600 1421100 0 0 0 9696 612 9961 34803 52407 52407 1 QPAIISQLDPVNER GLRAAMEALVVEVTKQPAIISQLDPVNERM KQPAIISQLDPVNERMLNMIRQISRPSAAG K Q P E R M 1 1 1 1 0 2 1 0 0 2 1 0 0 0 2 1 0 0 0 1 0 0 14 0 1578.8366 Q08211;B3KU66 Q08211 1117 1130 DHX9 ATP-dependent RNA helicase A yes no 2 4.274E-21 177.04 4 1 0.67661 0.92442 6.9155 4 Median 0.67661 0.92442 6.9155 4 0 Median NaN NaN NaN 0 0 Median 173350000 108630000 64718000 160490000 95775000 64718000 12853000 12853000 0 9697 1448 9962 34804;34805;34806;34807;34808 52408;52409;52410;52411;52412;52413;52414;52415;52416 52409 9 QPALTADFVNYYFER NSDTSSSVDGRRKHKQPALTADFVNYYFER QPALTADFVNYYFERNMRMIQIQENMAEQK K Q P E R N 2 1 1 1 0 1 1 0 0 0 1 0 0 2 1 0 1 0 2 1 0 0 15 0 1832.8733 A0A0U1RRH6;O94880;B4DG57 A0A0U1RRH6 612 626 PHF14 PHD finger protein 14 yes no 2 0.0062994 41.401 1 0.75141 1.0426 NaN 1 Median 0.75141 1.0426 NaN 1 0 Median NaN NaN NaN 0 0 Median 4997600 2739800 2257800 4997600 2739800 2257800 0 0 0 9698 487 9963 34809 52417 52417 1 QPCDSSCPCVIAQNFCEK SSNHVYNYQPCDHPRQPCDSSCPCVIAQNF DSSCPCVIAQNFCEKFCQCSSECQNRFPGC R Q P E K F 1 0 1 1 4 2 1 0 0 1 0 1 0 1 2 2 0 0 0 1 0 0 18 0 2198.8853 A0A090N8E9;Q15910;S4S3R8;Q75MP9;Q75MQ0 A0A090N8E9 533 550 EZH2 Histone-lysine N-methyltransferase EZH2 yes no 2 0.00013285 94.728 3 0.90724 1.1813 16.544 2 Median 0.90724 1.1813 16.544 2 0 Median NaN NaN NaN 0 0 Median 7813400 4915000 2898400 7813400 4915000 2898400 0 0 0 9699 381 9964 34810;34811;34812 52418;52419;52420;52421;52422 52419 5 QPCPSESDIITEEDK EVKIPKPRGRPKMVKQPCPSESDIITEEDK QPCPSESDIITEEDKSKKKGQEEKQPKKQP K Q P D K S 0 0 0 2 1 1 3 0 0 2 0 1 0 0 2 2 1 0 0 0 0 0 15 0 1746.7618 O75475;Q05CM9 O75475 202 216 PSIP1 PC4 and SFRS1-interacting protein yes no 2 2.2934E-33 195.77 4 1 0.91863 1.1698 17.466 5 Median 0.92341 1.1777 9.842 4 0 Median 0.56867 0.86295 NaN 1 0 Median 52753000 29575000 23178000 42900000 23296000 19604000 9852900 6279500 3573400 9700 1201 9965 34813;34814;34815;34816;34817 52423;52424;52425;52426;52427;52428;52429;52430 52424 8 QPDSPTALYHFNASLYLLR ALHAQVERLVQQAGRQPDSPTALYHFNASL PTALYHFNASLYLLRVLKGNTAEGCVHETQ R Q P L R V 2 1 1 1 0 1 0 0 1 0 4 0 0 1 2 2 1 0 2 0 0 0 19 0 2205.1219 Q9BQG0;I3L1L3 Q9BQG0 914 932 MYBBP1A Myb-binding protein 1A yes no 3 6.667E-05 61.757 4 0.62396 0.82549 21.6 4 Median 0.62396 0.82549 21.6 4 0 Median NaN NaN NaN 0 0 Median 38268000 22910000 15358000 38268000 22910000 15358000 0 0 0 9701 1708 9966 34818;34819;34820;34821 52431;52432;52433;52434;52435;52436;52437;52438;52439 52439 9 QPEDDLFDR EKRVFKNLQLFMENKQPEDDLFDRLNTGIL LFMENKQPEDDLFDRLNTGILNKHLQDLME K Q P D R L 0 1 0 3 0 1 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 9 0 1133.4989 P11387;B9EG90 P11387 559 567 TOP1 DNA topoisomerase 1 yes no 2 0.0021096 86.67 2 2 0.73769 1.024 18.253 4 Median 0.64367 0.8711 2.0268 2 0 Median 0.85008 1.1941 0.87871 2 0 Median 41241000 25424000 15817000 21134000 14321000 6812800 20107000 11103000 9004000 9702 1255 9967 34822;34823;34824;34825 52440;52441;52442;52443;52444 52441 5 QPEDDLFDRLNTGILNK EKRVFKNLQLFMENKQPEDDLFDRLNTGIL EDDLFDRLNTGILNKHLQDLMEGLTAKVFR K Q P N K H 0 1 2 3 0 1 1 1 0 1 3 1 0 1 1 0 1 0 0 0 0 0 17 1 1987.0011 P11387;B9EG90 P11387 559 575 TOP1 DNA topoisomerase 1 yes no 3 8.9714E-10 94.673 4 2 0.70117 0.9459 13.482 6 Median 0.74705 0.97338 4.7906 4 0 Linear 0.71721 1.1631 5.2685 2 0 Median 167980000 94342000 73639000 134600000 76576000 58029000 33376000 17767000 15610000 9703 1255 9968 34826;34827;34828;34829;34830;34831 52445;52446;52447;52448;52449;52450;52451;52452;52453;52454 52450 10 QPEKEEEEEAGESVEDIFSEVVGR GPVGPAPSRPALQEKQPEKEEEEEAGESVE AGESVEDIFSEVVGRKRQRSGPNRGAKRRR K Q P G R K 1 1 0 1 0 1 9 2 0 1 0 1 0 1 1 2 0 0 0 3 0 0 24 1 2720.2301 Q8TDD1 Q8TDD1 632 655 DDX54 ATP-dependent RNA helicase DDX54 yes yes 3 0.031872 32.491 1 0.7754 1.0522 NaN 1 Median 0.7754 1.0522 NaN 1 0 Median NaN NaN NaN 0 0 Median 4763900 2735400 2028500 4763900 2735400 2028500 0 0 0 9704 1658 9969 34832 52455 52455 1 QPGSSSSSAPGQPSTGVARPTVSSGPVPR PMVTPHNKAKSPGVRQPGSSSSSAPGQPST TGVARPTVSSGPVPRRQNGSSSSGPERSIS R Q P P R R 2 2 0 0 0 2 0 4 0 0 0 0 0 0 6 8 2 0 0 3 0 0 29 1 2734.3634 B4E223;Q68D10 B4E223 370 398 SPTY2D1 Protein SPT2 homolog yes no 3 0.024302 15.764 1 1.3191 1.7484 NaN 1 Median NaN NaN NaN 0 0 Median 1.3191 1.7484 NaN 1 0 Median 4919300 2416300 2503000 0 0 0 4919300 2416300 2503000 9705 888 9970 34833 52456 52456 1 QPIPAAYNR PAPNAAPVDPTLRTKQPIPAAYNRYDQERF PTLRTKQPIPAAYNRYDQERFKGKEETEGF K Q P N R Y 2 1 1 0 0 1 0 0 0 1 0 0 0 0 2 0 0 0 1 0 0 0 9 0 1028.5403 Q6P1J9;B4DV47;A0A0S2Z5M9;A0A0S2Z5N1 Q6P1J9 284 292 CDC73 Parafibromin yes no 2 0.010592 62.659 1 0.68951 0.9546 NaN 1 Median 0.68951 0.9546 NaN 1 0 Median NaN NaN NaN 0 0 Median 11174000 5688600 5485600 11174000 5688600 5485600 0 0 0 9706 1590 9971 34834 52457 52457 1 QPNVQDFQFFPPR RVSEPKAPKAPRPPKQPNVQDFQFFPPRLF PKQPNVQDFQFFPPRLFELLEKEILFYRKT K Q P P R L 0 1 1 1 0 3 0 0 0 0 0 0 0 3 3 0 0 0 0 1 0 0 13 0 1618.7892 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370 O60264 768 780 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 2 0.0031575 95.81 4 2.3226 3.0936 1.6895 2 Median 2.3226 3.0936 1.6895 2 0 Median NaN NaN NaN 0 0 Median 25826000 4011300 21815000 25826000 4011300 21815000 0 0 0 9707 1189 9972 34835;34836;34837;34838 52458;52459;52460;52461 52461 4 QPPLLPAALQAPTQILK EEGNVWLYDVSNILKQPPLLPAALQAPTQI PLLPAALQAPTQILKWPQPWALGQVVTKTM K Q P L K W 3 0 0 0 0 3 0 0 0 1 4 1 0 0 4 0 1 0 0 0 0 0 17 0 1798.0717 A0A140VJD0;Q9UFC0 A0A140VJD0 588 604 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes no 2 0.0062228 33.526 1 0.58088 0.74474 NaN 1 Median 0.58088 0.74474 NaN 1 0 Median NaN NaN NaN 0 0 Median 3504100 2449600 1054500 3504100 2449600 1054500 0 0 0 9708 493 9973 34839 52462 52462 1 QPPVSPGTALVGSQK EKDGTEKRGRGRPRKQPPVSPGTALVGSQK QPPVSPGTALVGSQKEPSEVPTPKRPRGRP K Q P Q K E 1 0 0 0 0 2 0 2 0 0 1 1 0 0 3 2 1 0 0 2 0 0 15 0 1464.7936 P17096;B4DWA0;A0A024RCT9 P17096 32 46 HMGA1 High mobility group protein HMG-I/HMG-Y yes no 2 0.0014113 87.641 4 2 0.86662 1.0815 9.7817 5 Median 0.97071 1.1713 7.3172 3 0 Median 0.62542 1.0021 0.16521 2 0 Median 222930000 122760000 100170000 108490000 52224000 56265000 114440000 70536000 43908000 9709 1275 9974 34840;34841;34842;34843;34844;34845 52463;52464;52465;52466;52467;52468 52464 6 QPPVSPGTALVGSQKEPSEVPTPK EKDGTEKRGRGRPRKQPPVSPGTALVGSQK LVGSQKEPSEVPTPKRPRGRPKGSKNKGAA K Q P P K R 1 0 0 0 0 2 2 2 0 0 1 2 0 0 6 3 2 0 0 3 0 0 24 1 2429.2802 P17096;B4DWA0;A0A024RCT9 P17096 32 55 HMGA1 High mobility group protein HMG-I/HMG-Y yes no 3 0.00098052 48.867 3 1 0.93193 1.1454 23.336 4 Median 0.98622 1.22 9.7244 3 0 Median 0.47833 0.77071 NaN 1 0 Median 64718000 33686000 31032000 46731000 22243000 24488000 17987000 11443000 6544200 9710 1275 9975 34846;34847;34848;34849 52469;52470;52471;52472;52473;52474 52470 6 QPTIFQNK ______________________________ TERAYQKQPTIFQNKKRVLLGETGKEKLPR K Q P N K K 0 0 1 0 0 2 0 0 0 1 0 1 0 1 1 0 1 0 0 0 0 0 8 0 974.51853 P62280;M0QZC5;M0R1H6 P62280 13 20 RPS11 40S ribosomal protein S11 yes no 2 0.0014296 114.72 4 2 0.79131 0.97864 31.464 5 Median 0.81387 1.0399 3.5579 3 0 Median 0.36104 0.57553 3.0023 2 0 Median 183320000 115360000 67964000 106060000 57588000 48471000 77264000 57772000 19493000 9711 1404 9976 34850;34851;34852;34853;34854;34855 52475;52476;52477;52478;52479;52480;52481;52482;52483;52484;52485 52481 11 QPVTDPLLTPVEK TPLEQEIFNLLHKNKQPVTDPLLTPVEKAS NKQPVTDPLLTPVEKASLRAMSLEEAKMRR K Q P E K A 0 0 0 1 0 1 1 0 0 0 2 1 0 0 3 0 2 0 0 2 0 0 13 0 1435.7922 Q9BVJ6;B4E343;X6RJY0 Q9BVJ6 197 209 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 0.01367 58.511 3 0.88349 1.1311 6.603 3 Median 0.88349 1.1311 6.603 3 0 Median NaN NaN NaN 0 0 Median 29923000 14725000 15199000 29923000 14725000 15199000 0 0 0 9712 1719 9977 34856;34857;34858 52486;52487;52488 52488 3 QPYAVSELAGHQTSAESWGTGR DIVNFVHTNLRKNNRQPYAVSELAGHQTSA LAGHQTSAESWGTGRAVARIPRVRGGGTHR R Q P G R A 3 1 0 0 0 2 2 3 1 0 1 0 0 0 1 3 2 1 1 1 0 0 22 0 2331.088 P36578;Q59GY2;B4DFI6;B4DMJ6;Q53G74;H3BTP7;H3BU31;B4DP82 P36578 50 71 RPL4 60S ribosomal protein L4 yes no 3 0.016138 17.503 1 0.70011 1.1014 NaN 1 Median NaN NaN NaN 0 0 Median 0.70011 1.1014 NaN 1 0 Median 25162000 14888000 10273000 0 0 0 25162000 14888000 10273000 9713 1325 9978 34859 52489;52490 52490 2 QQAAQAFIHNSLYGPGTNR YLAVRLKDQDLRDSRQQAAQAFIHNSLYGP QAFIHNSLYGPGTNRTTVNKFLSLANKRLP R Q Q N R T 3 1 2 0 0 3 0 2 1 1 1 0 0 1 1 1 1 0 1 0 0 0 19 0 2072.0188 A0A024QZW2;Q9UMY1 A0A024QZW2 187 205 NOL7 Nucleolar protein 7 yes no 3 1.1452E-07 108.97 4 2 0.83381 1.1314 14.847 6 Median 0.91805 1.2473 10.104 4 0 Median 0.67508 0.96563 0.28264 2 0 Median 146380000 80801000 65578000 121300000 65468000 55835000 25076000 15333000 9743500 9714 21 9979 34860;34861;34862;34863;34864;34865 52491;52492;52493;52494;52495;52496;52497;52498;52499;52500;52501;52502;52503;52504 52495 14 QQASHYLYVR SPLGYAAIPIKFSEKQQASHYLYVRAHGVR KFSEKQQASHYLYVRAHGVRQGTKSTWPQK K Q Q V R A 1 1 0 0 0 2 0 0 1 0 1 0 0 0 0 1 0 0 2 1 0 0 10 0 1263.636 Q9Y3A4;A0A024R4U1 Q9Y3A4 34 43 RRP7A;hCG_2044797 Ribosomal RNA-processing protein 7 homolog A yes no 2;3 0.0037386 50.292 2 1.0492 1.4453 0.35908 2 Median 1.0492 1.4453 0.35908 2 0 Median NaN NaN NaN 0 0 Median 32148000 15511000 16637000 32148000 15511000 16637000 0 0 0 9715 1815 9980 34866;34867 52505;52506;52507 52507 3 QQEELDALK ADLLQTKLQQSSYHKQQEELDALKKTIEES QSSYHKQQEELDALKKTIEESEETLKNTKE K Q Q L K K 1 0 0 1 0 2 2 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1072.5401 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;B3KM27 A0A024R158 741 749 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.013314 58.426 1 0.67595 0.85577 NaN 1 Median 0.67595 0.85577 NaN 1 0 Median NaN NaN NaN 0 0 Median 10584000 6673100 3911100 10584000 6673100 3911100 0 0 0 9716 50 9981 34868 52508 52508 1 QQEELDALKK ADLLQTKLQQSSYHKQQEELDALKKTIEES SSYHKQQEELDALKKTIEESEETLKNTKEI K Q Q K K T 1 0 0 1 0 2 2 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 10 1 1200.635 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;B3KM27 A0A024R158 741 750 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2;3 1.2712E-05 135.86 5 3 0.69543 0.8512 29.777 3 Median 0.67982 0.82863 3.8007 2 0 Median 0.87033 1.385 NaN 1 0 Median 296450000 229290000 67159000 244070000 189190000 54885000 52381000 40108000 12274000 9717 50 9982 34869;34870;34871;34872;34873;34874;34875;34876 52509;52510;52511;52512;52513;52514;52515;52516 52509 8 QQEELLAEENQR RRKQEELQQLEQQRRQQEELLAEENQRLRE QRRQQEELLAEENQRLREQLQLLEEQHRAA R Q Q Q R L 1 1 1 0 0 3 4 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 12 0 1485.7059 Q15149;D3DWL0;H0YDN1 Q15149 2719 2730 PLEC;PLEC1 Plectin yes no 2 4.9884E-10 131.82 3 0.9056 1.2036 3.8671 2 Median 0.9056 1.2036 3.8671 2 0 Median NaN NaN NaN 0 0 Median 20815000 10855000 9960100 20815000 10855000 9960100 0 0 0 9718 1507 9983 34877;34878;34879 52517;52518;52519;52520;52521 52519 5 QQEVEAITLELEELK AKTKADASSKKMKEKQQEVEAITLELEELK QQEVEAITLELEELKREHTSYKQQLEAVNE K Q Q L K R 1 0 0 0 0 2 5 0 0 1 3 1 0 0 0 0 1 0 0 1 0 0 15 0 1770.9251 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27 A0A024R158 816 830 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 2.211E-22 176.32 4 2 0.71951 0.91907 15.143 6 Median 0.71951 0.88128 4.4945 4 0 Median 0.74415 1.151 13.393 2 0 Median 138880000 82870000 56009000 70823000 41125000 29698000 68055000 41745000 26310000 9719 50 9984 34880;34881;34882;34883;34884;34885 52522;52523;52524;52525;52526;52527;52528;52529;52530;52531 52527 10 QQEVEAITLELEELKR AKTKADASSKKMKEKQQEVEAITLELEELK QEVEAITLELEELKREHTSYKQQLEAVNEA K Q Q K R E 1 1 0 0 0 2 5 0 0 1 3 1 0 0 0 0 1 0 0 1 0 0 16 1 1927.0262 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27 A0A024R158 816 831 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 3 3.3754E-14 115.1 5 1 0.70017 0.92026 13.726 5 Median 0.70036 0.92284 5.8707 4 0 Median 0.40479 0.67481 NaN 1 0 Median 333720000 195680000 138040000 288890000 165360000 123530000 44833000 30321000 14512000 9720 50 9985 34886;34887;34888;34889;34890;34891 52532;52533;52534;52535;52536;52537;52538;52539 52537 7 QQFTEEEIYK ISNEKPEVKIGVSVKQQFTEEEIYKDRDSQ GVSVKQQFTEEEIYKDRDSQITAIEKTFED K Q Q Y K D 0 0 0 0 0 2 3 0 0 1 0 1 0 1 0 0 1 0 1 0 0 0 10 0 1313.6139 A0A024R0H6;Q8N7H5;B4DGJ5 A0A024R0H6 161 170 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 0.0074104 104.01 2 0.8364 1.0651 NaN 1 Median 0.8364 1.0651 NaN 1 0 Median NaN NaN NaN 0 0 Median 14311000 3424800 10887000 14311000 3424800 10887000 0 0 0 9721 36 9986 34892;34893 52540;52541 52541 1 QQFVEYDK WIQMSFKHYAMQEAKQQFVEYDKNSDDTVT YAMQEAKQQFVEYDKNSDDTVTWDEYNIQM K Q Q D K N 0 0 0 1 0 2 1 0 0 0 0 1 0 1 0 0 0 0 1 1 0 0 8 0 1055.4924 Q14257;H0YL43 Q14257 104 111 RCN2 Reticulocalbin-2 yes no 2 0.011289 70.919 1 1.6034 2.03 NaN 1 Median 1.6034 2.03 NaN 1 0 Median NaN NaN NaN 0 0 Median 10581000 3792900 6787800 10581000 3792900 6787800 0 0 0 9722 1484 9987 34894 52542 52542 1 QQGLASYDYVR IIIIIEIIEKTEIIRQQGLASYDYVRRRLT EIIRQQGLASYDYVRRRLTAEDLFEARIIS R Q Q V R R 1 1 0 1 0 2 0 1 0 0 1 0 0 0 0 1 0 0 2 1 0 0 11 0 1298.6255 Q15149;D3DWL0;Q96IE3 Q15149 3771 3781 PLEC;PLEC1 Plectin yes no 2 1.6433E-05 98.943 2 1 0.65227 0.87316 56.631 3 Median 0.64655 0.86235 1.7621 2 0 Median 1.7302 2.2992 NaN 1 0 Median 54908000 30949000 23960000 50160000 29368000 20793000 4748100 1581100 3167000 9723 1507 9988 34895;34896;34897 52543;52544;52545;52546;52547 52544 5 QQGVLALRPYLQK STQEPCQRAAETVLKQQGVLALRPYLQKQP LKQQGVLALRPYLQKQPQPSPAEGRAVTNE K Q Q Q K Q 1 1 0 0 0 3 0 1 0 0 3 1 0 0 1 0 0 0 1 1 0 0 13 1 1512.8776 A8K492;P56192;B4E0E9;A0A024RBA2;H0YHV5 A8K492 192 204 MARS Methionine--tRNA ligase, cytoplasmic yes no 3 0.00074887 90.913 1 0.40038 0.53782 NaN 1 Median 0.40038 0.53782 NaN 1 0 Median NaN NaN NaN 0 0 Median 5059200 3063000 1996200 5059200 3063000 1996200 0 0 0 9724 602 9989 34898 52548 52548 1 QQICNQQPPCSR FFMPEICKSYKGEGRQQICNQQPPCSRLHI EGRQQICNQQPPCSRLHICDHFTRGNCRFP R Q Q S R L 0 1 1 0 2 4 0 0 0 1 0 0 0 0 2 1 0 0 0 0 0 0 12 0 1514.6718 Q7Z2W4;A8K9U6;C9J6P4 Q7Z2W4 159 170 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 0.00053905 72.2 1 0.67428 0.92893 NaN 1 Median 0.67428 0.92893 NaN 1 0 Median NaN NaN NaN 0 0 Median 2753800 1449200 1304600 2753800 1449200 1304600 0 0 0 9725 1613 9990 34899 52549;52550 52550 2 QQIESYPTDSILEDQSDQR LNPLTFVPAIASAIRQQIESYPTDSILEDQ SYPTDSILEDQSDQRVIIKLNIHVGNISLV R Q Q Q R V 0 1 0 3 0 4 2 0 0 2 1 0 0 0 1 3 1 0 1 0 0 0 19 0 2251.024 Q9H836;G5E975;Q12824;B5MCL5 Q9H836 252 270 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 yes no 2 5.665E-31 167.89 3 0.7803 1.0923 26.29 3 Median 0.7803 1.0923 26.29 3 0 Median NaN NaN NaN 0 0 Median 7359000 4404200 2954800 7359000 4404200 2954800 0 0 0 9726 1081 9991 34900;34901;34902 52551;52552;52553;52554;52555 52553 5 QQIQSIQQSIER VIACSVTIKEGSQLKQQIQSIQQSIERLLV QLKQQIQSIQQSIERLLV____________ K Q Q E R L 0 1 0 0 0 5 1 0 0 3 0 0 0 0 0 2 0 0 0 0 0 0 12 0 1456.7634 Q6FHM6;B1AHD1;P55769 Q6FHM6 114 125 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes no 2 9.7224E-16 178.84 4 2 0.68547 0.93639 13.442 6 Median 0.70004 0.96128 3.744 4 0 Median 0.45791 0.74966 1.8749 2 0 Median 775150000 471400000 303750000 557030000 325600000 231430000 218120000 145790000 72323000 9727 670 9992 34903;34904;34905;34906;34907;34908 52556;52557;52558;52559;52560;52561;52562;52563;52564;52565;52566;52567 52565 12 QQLEAVNEAIK TLELEELKREHTSYKQQLEAVNEAIKSYES TSYKQQLEAVNEAIKSYESQIEVMAAEVAK K Q Q I K S 2 0 1 0 0 2 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 11 0 1241.6616 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27 A0A024R158 838 848 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.0013747 112.3 4 2 0.66484 0.89174 6.522 5 Median 0.69979 0.88233 3.6276 3 0 Median 0.62721 0.9691 0.83555 2 0 Median 171290000 92168000 79122000 118550000 59125000 59429000 52736000 33043000 19693000 9728 50 9993 34909;34910;34911;34912;34913;34914 52568;52569;52570;52571;52572;52573;52574;52575;52576;52577;52578 52576 11 QQLLTLR SCLEELMKCQIIYPRQQLLTLRELEMIGFI KCQIIYPRQQLLTLRELEMIGFIENNVSKL R Q Q L R E 0 1 0 0 0 2 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 7 0 870.5287 Q15645 Q15645 348 354 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 2 0.015128 90.661 2 0.40447 0.53799 15.181 2 Median 0.40447 0.53799 15.181 2 0 Median NaN NaN NaN 0 0 Median 38304000 28389000 9915300 38304000 28389000 9915300 0 0 0 9729 1514 9994 34915;34916 52579;52580 52580 2 QQLPEQPFEK KDHHQPLGRAKGVEKQQLPEQPFEKAAFQK KGVEKQQLPEQPFEKAAFQKQNDTPKGPQP K Q Q E K A 0 0 0 0 0 3 2 0 0 0 1 1 0 1 2 0 0 0 0 0 0 0 10 0 1242.6245 P46087 P46087 758 767 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 5.2979E-44 228.05 3 1 0.7412 0.91689 12.127 4 Median 0.75841 0.94386 12.196 3 0 Median 0.54196 0.85489 NaN 1 0 Median 167390000 95089000 72300000 126910000 69434000 57480000 40475000 25655000 14820000 9730 1343 9995 34917;34918;34919;34920 52581;52582;52583;52584;52585;52586;52587 52582 7 QQLPQTPPSCLK LLFENRRKGRQQQQKQQLPQTPPSCLKTEI QQKQQLPQTPPSCLKTEIMSPLYQDEAPKG K Q Q L K T 0 0 0 0 1 3 0 0 0 0 2 1 0 0 3 1 1 0 0 0 0 0 12 0 1395.718 Q8IY81;B4DKU3 Q8IY81 568 579 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 0.00044969 109.83 3 0.71934 0.90248 11.538 2 Median 0.71934 0.90248 11.538 2 0 Median NaN NaN NaN 0 0 Median 25793000 13981000 11811000 25793000 13981000 11811000 0 0 0 9731 1628 9996 34921;34922;34923 52588;52589;52590;52591;52592 52591 5 QQLSAEELDAQLDAYNAR GGARGRGRGAGRNSKQQLSAEELDAQLDAY SAEELDAQLDAYNARMDTS___________ K Q Q A R M 4 1 1 2 0 3 2 0 0 0 3 0 0 0 0 1 0 0 1 0 0 0 18 0 2033.9654 E9PB61;Q86V81 E9PB61 243 260 ALYREF THO complex subunit 4 yes no 2 1.703E-126 283.05 3 2 1.0493 1.4421 100.29 5 Median 1.1821 1.5829 10.598 3 0 Median 0.16245 0.25711 2.1569 2 0 Median 101490000 74698000 26796000 31551000 14098000 17453000 69943000 60600000 9342900 9732 1021 9997 34924;34925;34926;34927;34928 52593;52594;52595;52596;52597;52598;52599;52600;52601;52602;52603;52604;52605 52597 13 QQNELAELHANLAR KVAGIESHSELQISRQQNELAELHANLARA RQQNELAELHANLARALQQVQEKEVRAQKL R Q Q A R A 3 1 2 0 0 2 2 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 14 0 1605.8223 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q4LE64;Q14980 Q4LE64 870 883 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 5.0873E-05 67.275 4 1 0.64032 0.85425 10.667 4 Median 0.64032 0.85425 10.667 4 0 Median NaN NaN NaN 0 0 Median 88215000 51838000 36377000 83619000 47242000 36377000 4595900 4595900 0 9733 148;1499 9998 34929;34930;34931;34932;34933 52606;52607;52608;52609;52610;52611 52609 6 QQNQEITDQLEEEKK YVTNKQLNITIEKLKQQNQEITDQLEEEKK QQNQEITDQLEEEKKECHQKQGALREQLQV K Q Q K K E 0 0 1 1 0 4 4 0 0 1 1 2 0 0 0 0 1 0 0 0 0 0 15 1 1858.8909 Q08379;H0Y7B8;B7ZC06 Q08379 189 203 GOLGA2 Golgin subfamily A member 2 yes no 3 0.020021 29.287 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2756200 2756200 0 2756200 2756200 0 0 0 0 9734 1449 9999 34934 52612 52612 1 QQNQELQEQLR KLQMEKAKTHYDAKKQQNQELQEQLRSLEQ DAKKQQNQELQEQLRSLEQLQKENKELRAE K Q Q L R S 0 1 1 0 0 5 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1412.7008 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;K4DIE0;Q4LE64;Q14980 Q4LE64 1612 1622 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 1.2981E-11 170.5 4 2 0.6876 0.93219 44.782 6 Median 0.76825 1.0366 16.063 4 0 Median 0.31617 0.46038 5.4892 2 0 Median 66767000 42739000 24028000 39722000 22929000 16793000 27045000 19810000 7234800 9735 148;1499 10000 34935;34936;34937;34938;34939;34940 52613;52614;52615;52616;52617;52618;52619;52620;52621;52622;52623;52624 52620 12 QQPGIELPETELSLR KRRQQHRSRRSLRRRQQPGIELPETELSLR QQPGIELPETELSLRVGKDQRRNNEELVVS R Q Q L R V 0 1 0 0 0 2 3 1 0 1 3 0 0 0 2 1 1 0 0 0 0 0 15 0 1708.8996 B4DES6;B7Z9P6;G3XAG1;Q96ME7;Q658M0 B4DES6 403 417 ZNF512;DKFZp666L156 Zinc finger protein 512 yes no 2 0.019928 60.301 2 0.62526 0.8493 13.549 2 Median 0.62526 0.8493 13.549 2 0 Median NaN NaN NaN 0 0 Median 14067000 7951000 6115500 14067000 7951000 6115500 0 0 0 9736 799 10001 34941;34942 52625;52626 52625 2 QQPPLAQPSASPYPEAVELQR LTAGSGGRGGGGGRRQQPPLAQPSASPYPE QPSASPYPEAVELQRRSLPIFQARGQLLAQ R Q Q Q R R 3 1 0 0 0 4 2 0 0 0 2 0 0 0 5 2 0 0 1 1 0 0 21 0 2305.1703 B4DIS6;Q9H6R0;Q05BE5;I3L0M5 B4DIS6 110 130 DHX33 Putative ATP-dependent RNA helicase DHX33 yes no 2 5.33E-08 101.3 2 0.9581 1.3235 2.117 2 Median 0.9581 1.3235 2.117 2 0 Median NaN NaN NaN 0 0 Median 5100300 2377800 2722500 5100300 2377800 2722500 0 0 0 9737 811 10002 34943;34944 52627;52628 52627 2 QQQEEEDLNLEDRGEETVLGGGTR ESRAYADPCSRRKKRQQQEEEDLNLEDRGE LEDRGEETVLGGGTREAESRACSDGRSRKS R Q Q T R E 0 2 1 2 0 3 6 4 0 0 3 0 0 0 0 0 2 0 0 1 0 0 24 1 2701.2427 Q5T3I0;A8KAG1 Q5T3I0 340 363 GPATCH4 G patch domain-containing protein 4 yes no 3 4.1548E-21 96.379 4 2 0.87523 1.1919 9.3805 6 Median 0.91345 1.2557 7.4996 4 0 Median 0.72667 1.1117 6.3279 2 0 Median 118830000 64335000 54494000 62729000 34192000 28537000 56101000 30143000 25958000 9738 1568 10003 34945;34946;34947;34948;34949;34950 52629;52630;52631;52632;52633;52634;52635;52636;52637 52635 9 QQQEELEAEHGTGDKPAAPR YVGPRLSRRILQQARQQQEELEAEHGTGDK LEAEHGTGDKPAAPRERTTRLGPRMPQDGS R Q Q P R E 3 1 0 1 0 3 4 2 1 0 1 1 0 0 2 0 1 0 0 0 0 0 20 1 2190.0301 Q13895;F8WBL2 Q13895 64 83 BYSL Bystin yes no 3;4 1.3917E-07 87.388 6 2 0.89348 1.1844 15.973 8 Median 0.97297 1.3102 15.215 6 0 Median 0.6945 1.0369 8.6815 2 0 Median 69464000 39820000 29644000 60457000 34371000 26086000 9006800 5448300 3558500 9739 1480 10004 34951;34952;34953;34954;34955;34956;34957;34958 52638;52639;52640;52641;52642;52643;52644;52645;52646;52647;52648;52649;52650 52649 13 QQQFNVQALVAVGDHASK HTSRAKGKQCFLVLRQQQFNVQALVAVGDH FNVQALVAVGDHASKQMVKFAANINKESIV R Q Q S K Q 3 0 1 1 0 4 0 1 1 0 1 1 0 1 0 1 0 0 0 3 0 0 18 0 1938.9912 D3DP78;A0A140VJW5;P14868;C9J7S3;C9JLC1;Q53R85;C9JQM9;H7C278 D3DP78 49 66 DARS Aspartate--tRNA ligase, cytoplasmic yes no 3 7.5965E-06 99.021 3 0.45286 0.57108 16.391 2 Median 0.45286 0.57108 16.391 2 0 Median NaN NaN NaN 0 0 Median 27885000 20244000 7641200 27885000 20244000 7641200 0 0 0 9740 504 10005 34959;34960;34961 52651;52652;52653 52652 3 QQQLHGERPHLTSR ERERAVQAYRALKQRQQQLHGERPHLTSRK RQQQLHGERPHLTSRK______________ R Q Q S R K 0 2 0 0 0 3 1 1 2 0 2 0 0 0 1 1 1 0 0 0 0 0 14 1 1685.871 I3L0U5;H6QX63;Q6PK04 I3L0U5 278 291 CCDC137 Coiled-coil domain-containing protein 137 yes no 3 0.0066315 31.827 1 0.95873 1.2112 NaN 1 Median 0.95873 1.2112 NaN 1 0 Median NaN NaN NaN 0 0 Median 5169600 2703700 2465900 5169600 2703700 2465900 0 0 0 9741 1112 10006 34962 52654 52654 1 QQQLLNEENLR YQDKLARQRYEDQLKQQQLLNEENLRKQEE DQLKQQQLLNEENLRKQEESVQKQEAMRRA K Q Q L R K 0 1 2 0 0 3 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 11 0 1383.7106 Q9NVI7;Q5T9A4;Q96T67 Q9NVI7 195 205 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B no no 2 0.040047 48.091 1 0.51448 0.67997 NaN 1 Median 0.51448 0.67997 NaN 1 0 Median NaN NaN NaN 0 0 Median 6605200 3188900 3416300 6605200 3188900 3416300 0 0 0 9742 1763;1573 10007 34963 52655 52655 1 QQQPPPPPPQPPQIPEGSADGEPKPK KKKGRPIGSVNKQKKQQQPPPPPPQPPQIP PQIPEGSADGEPKPKKQRQRRERRKPGAQP K Q Q P K K 1 0 0 1 0 5 2 2 0 1 0 2 0 0 11 1 0 0 0 0 0 0 26 1 2740.382 W5ZR30;Q9UGU0 W5ZR30 1553 1578 TCF20 Transcription factor 20 yes no 3 0.021788 75.054 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9743 1783 10008 34964 52656 52656 1 QQQVLPLDPAEPEIR NTTSSPCKGRAKRRRQQQVLPLDPAEPEIR QQQVLPLDPAEPEIRLKYISSCKRLRSDSR R Q Q I R L 1 1 0 1 0 3 2 0 0 1 2 0 0 0 3 0 0 0 0 1 0 0 15 0 1731.9155 Q7Z5J4 Q7Z5J4 1562 1576 RAI1 Retinoic acid-induced protein 1 yes yes 2 0.002767 83.045 3 0.85436 1.1863 NaN 1 Median 0.85436 1.1863 NaN 1 0 Median NaN NaN NaN 0 0 Median 7609300 6752500 856820 7609300 6752500 856820 0 0 0 9744 1617 10009 34965;34966;34967 52657;52658;52659 52657 3 QQSALDESNTYQLPDGSR YVPQNLGEALDFRERQQSALDESNTYQLPD ALDESNTYQLPDGSRVELTPMQRVAPEMFF R Q Q S R V 1 1 1 2 0 3 1 1 0 0 2 0 0 0 1 3 1 0 1 0 0 0 18 0 2007.9134 Q9H568 Q9H568 228 245 ACTL8 Actin-like protein 8 yes yes 2 3.5925E-07 157.23 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2797800 2797800 0 2797800 2797800 0 0 0 0 9745 1735 10010 34968;34969 52660;52661;52662 52662 3 QQSVAHQQSGSELALR DEKIEELEALLQEARQQSVAHQQSGSELAL QSVAHQQSGSELALRRSQRLAASASTQQLQ R Q Q L R R 2 1 0 0 0 4 1 1 1 0 2 0 0 0 0 3 0 0 0 1 0 0 16 0 1737.8758 O95235 O95235 660 675 KIF20A Kinesin-like protein KIF20A yes yes 2;3 3.5822E-50 209.67 5 1 0.78787 1.0718 36.33 5 Median 0.78865 1.0812 32.488 4 0 Median 0.50228 0.69522 NaN 1 0 Median 71545000 39903000 31641000 60714000 33085000 27628000 10831000 6818000 4013100 9746 1215 10011 34970;34971;34972;34973;34974;34975 52663;52664;52665;52666;52667;52668;52669;52670;52671 52663 9 QQSVAHQQSGSELALRR DEKIEELEALLQEARQQSVAHQQSGSELAL SVAHQQSGSELALRRSQRLAASASTQQLQE R Q Q R R S 2 2 0 0 0 4 1 1 1 0 2 0 0 0 0 3 0 0 0 1 0 0 17 1 1893.9769 O95235 O95235 660 676 KIF20A Kinesin-like protein KIF20A yes yes 3 0.020067 33.265 2 1 0.79088 1.0373 35.773 3 Median 0.81618 1.1028 8.6651 2 0 Median 0.44975 0.59896 NaN 1 0 Median 16937000 9233100 7703900 13172000 6695500 6476300 3765200 2537700 1227500 9747 1215 10012 34976;34977;34978 52672;52673;52674 52673 3 QQTQHAVEGDCDIHVLK CHVLDPTPLANCSVRQQTQHAVEGDCDIHV TQHAVEGDCDIHVLKQDGQFSVLFTKCDSS R Q Q L K Q 1 0 0 2 1 3 1 1 2 1 1 1 0 0 0 0 1 0 0 2 0 0 17 0 1976.9374 CON__P12763 CON__P12763 104 120 yes yes 3;4 0.0036897 61.127 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17048000 17048000 0 17048000 17048000 0 0 0 0 + 9748 959 10013 34979;34980;34981;34982 52675;52676;52677;52678;52679 52677 5 QQVPSGESAILDR VCSTNDLKELLIFNKQQVPSGESAILDRVA NKQQVPSGESAILDRVADGMVFGALLPCEE K Q Q D R V 1 1 0 1 0 2 1 1 0 1 1 0 0 0 1 2 0 0 0 1 0 0 13 0 1398.7103 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 270 282 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 2.3029E-08 106.62 4 1 1.057 1.4571 27.607 5 Median 1.0691 1.4646 1.5835 4 0 Median 0.47957 0.79333 NaN 1 0 Median 502930000 264520000 238410000 410560000 200330000 210230000 92367000 64191000 28175000 9749 107 10014 34983;34984;34985;34986;34987 52680;52681;52682;52683;52684;52685;52686;52687;52688 52687 9 QQVQVVGLQEHLVNSADDVIK LLNKKAKLRVLEDGKQQVQVVGLQEHLVNS GLQEHLVNSADDVIKMIDMGSACRTSGQTF K Q Q I K M 1 0 1 2 0 4 1 1 1 1 2 1 0 0 0 1 0 0 0 5 0 0 21 0 2318.223 A8K3S3;A0A140VKF1;Q99661;B7Z7M6;B7Z6Q6;Q8N5N1 A8K3S3 427 447 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 3 7.8332E-30 128.44 4 0.73948 0.91799 6.4881 4 Median 0.73948 0.91799 6.4881 4 0 Median NaN NaN NaN 0 0 Median 112890000 62841000 50052000 112890000 62841000 50052000 0 0 0 9750 514 10015 34988;34989;34990;34991 52689;52690;52691;52692;52693;52694;52695;52696 52694 8 QQVQVVGLQER LLNRKTKLRVLEDGKQQVQVVGLQEREVKC EDGKQQVQVVGLQEREVKCVEDVLKLIDIG K Q Q E R E 0 1 0 0 0 4 1 1 0 0 1 0 0 0 0 0 0 0 0 3 0 0 11 0 1282.6993 B0AZS5;H0Y8H2;O00139;B4DM85 B0AZS5 346 356 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A no no 2 0.015303 94.692 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1241300 1241300 0 1241300 1241300 0 0 0 0 9751 664;1163 10016 34992 52697 52697 1 QQVVLENAAK KEACKAAAEQAISVRQQVVLENAAKKRERA AISVRQQVVLENAAKKRERATSDPRTTEQK R Q Q A K K 2 0 1 0 0 2 1 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 10 0 1098.6033 Q01780 Q01780 769 778 EXOSC10 Exosome component 10 yes yes 2 0.0032031 67.897 1 0.54406 0.68671 NaN 1 Median 0.54406 0.68671 NaN 1 0 Median NaN NaN NaN 0 0 Median 10515000 7560900 2953800 10515000 7560900 2953800 0 0 0 9752 1433 10017 34993 52698 52698 1 QQYQTEMEK HQQDALWTEKLQVLKQQYQTEMEKLREKCE KLQVLKQQYQTEMEKLREKCEQEKETLLKD K Q Q E K L 0 0 0 0 0 3 2 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 9 0 1183.5179 H0Y6I0;Q13439;C9JHJ5;Q9H2G3;A8K3D5 H0Y6I0 507 515 GOLGA4 Golgin subfamily A member 4 yes no 2 0.025593 82.671 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5802000 5802000 0 5802000 5802000 0 0 0 0 9753 1093 10018 34994 52699 52699 1 QRDQEFYIPYRPK SGPNRGAKRRREEARQRDQEFYIPYRPKDF ARQRDQEFYIPYRPKDFDSERGLSISGEGG R Q R P K D 0 2 0 1 0 2 1 0 0 1 0 1 0 1 2 0 0 0 2 0 0 0 13 2 1738.8791 Q8TDD1;H0YHH7 Q8TDD1 675 687 DDX54 ATP-dependent RNA helicase DDX54 yes no 4 0.025473 48.214 1 0.87973 1.0345 NaN 1 Median 0.87973 1.0345 NaN 1 0 Median NaN NaN NaN 0 0 Median 4054300 2000200 2054100 4054300 2000200 2054100 0 0 0 9754 1658 10019 34995 52700 52700 1 QRELAEQELEK REARRRGKAEEQAVRQRELAEQELEKQRQL QAVRQRELAEQELEKQRQLAEGTAQQRLAA R Q R E K Q 1 1 0 0 0 2 4 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1371.6994 Q15149 Q15149 1823 1833 PLEC Plectin yes yes 2 6.9163E-15 178.46 2 1.4609 1.8482 NaN 1 Median 1.4609 1.8482 NaN 1 0 Median NaN NaN NaN 0 0 Median 8339500 3422400 4917100 8339500 3422400 4917100 0 0 0 9755 1507 10020 34996;34997 52701;52702 52701 2 QREPGLGFSFEFTEQQK ISRFHWRSQHTKANRQREPGLGFSFEFTEQ EPGLGFSFEFTEQQKEFQATARKFAREEII R Q R Q K E 0 1 0 0 0 3 3 2 0 0 1 1 0 3 1 1 1 0 0 0 0 0 17 1 2026.9749 A0A0S2Z366;Q5T4U5;Q5HYG7;P11310;E9PJM9;E9PRX4 A0A0S2Z366 30 46 ACADM;DKFZp686M24262 Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 3 1.4917E-11 137.32 3 0.31293 0.40615 64.114 3 Median 0.31293 0.40615 64.114 3 0 Median NaN NaN NaN 0 0 Median 17076000 13233000 3843200 17076000 13233000 3843200 0 0 0 9756 449 10021 34998;34999;35000 52703;52704;52705 52703 2 QRGGAEGELQALR EEIRVVRLQLEATERQRGGAEGELQALRAR ERQRGGAEGELQALRARAEEAEAQKRQAQE R Q R L R A 2 2 0 0 0 2 2 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 13 1 1383.7219 Q15149 Q15149 1604 1616 PLEC Plectin yes yes 3 0.033578 24.929 1 0.87531 1.132 NaN 1 Median 0.87531 1.132 NaN 1 0 Median NaN NaN NaN 0 0 Median 7270800 2789800 4481000 7270800 2789800 4481000 0 0 0 9757 1507 10022 35001 52706 52706 1 QRLAQEEESEAK KKPRVMAGTLKLEDKQRLAQEEESEAKRLA EDKQRLAQEEESEAKRLAIMMMKKREKYLY K Q R A K R 2 1 0 0 0 2 4 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 12 1 1416.6845 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6;H7C267 B5MCF9 505 516 PES1 Pescadillo homolog yes no 2;3 0.0061742 74.841 2 0.87649 1.1142 25.413 2 Median 0.87649 1.1142 25.413 2 0 Median NaN NaN NaN 0 0 Median 7252900 4102000 3150800 7252900 4102000 3150800 0 0 0 9758 735 10023 35002;35003 52707;52708 52707 2 QRVELQQEVEK SCRIKRVTQKEELERQRVELQQEVEKLARE ELERQRVELQQEVEKLARENSSMRLELDAL R Q R E K L 0 1 0 0 0 3 3 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 11 1 1384.731 A0A024R804;A8WFP5;O60675 A0A024R804 82 92 MAFK Transcription factor MafK yes no 2;3 3.8139E-18 196.44 6 4 1.2239 1.8856 16.098 10 Median 1.305 1.7212 20.93 6 0 Median 1.2053 1.9905 3.0382 4 0 Median 196980000 85535000 111450000 121070000 50715000 70352000 75917000 34820000 41097000 9759 188 10024 35004;35005;35006;35007;35008;35009;35010;35011;35012;35013 52709;52710;52711;52712;52713;52714;52715;52716;52717;52718;52719;52720;52721;52722;52723;52724;52725;52726;52727 52711 19 QRVQEQVMMTVKRQK ALPSDQKMKTGTSGRQRVQEQVMMTVKRQK QRVQEQVMMTVKRQKSKSSQSSTLSHSNRG R Q R Q K S 0 2 0 0 0 4 1 0 0 0 0 2 2 0 0 0 1 0 0 3 0 0 15 3 1888.0135 A0A024R952;Q13835 A0A024R952 39 53 PKP1 Plakophilin-1 yes no 3 0.018685 67.136 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9760 213 10025 35014 52728 52728 90;91 1 QRYEILTPNSIPK CRQGFPNRVVFQEFRQRYEILTPNSIPKGF FRQRYEILTPNSIPKGFMDGKQACVLMIKA R Q R P K G 0 1 1 0 0 1 1 0 0 2 1 1 0 0 2 1 1 0 1 0 0 0 13 1 1557.8515 A0A024R1N1;P35579;Q86XU5;B4E3S1;A0A0U4BW16 A0A024R1N1 719 731 MYH9 Myosin-9 no no 2;3 0.0054553 91.123 6 0.9651 1.2658 11.905 6 Median 0.9651 1.2658 11.905 6 0 Median NaN NaN NaN 0 0 Median 143710000 71324000 72390000 143710000 71324000 72390000 0 0 0 9761 61;490 10026 35015;35016;35017;35018;35019;35020 52729;52730;52731;52732;52733;52734;52735;52736 52734 8 QSGEAFVELGSEDDVK DGAAGVHFIYTREGRQSGEAFVELGSEDDV SGEAFVELGSEDDVKMALKKDRESMGHRYI R Q S V K M 1 0 0 2 0 1 3 2 0 0 1 1 0 1 0 2 0 0 0 2 0 0 16 0 1708.7792 A0A024R7T3;P52597;A0A1B0GW42 A0A024R7T3 53 68 HNRPF;HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 2 4.1618E-83 243.3 4 0.33307 0.4116 15.995 3 Median 0.33307 0.4116 15.995 3 0 Median NaN NaN NaN 0 0 Median 74751000 61252000 13498000 74751000 61252000 13498000 0 0 0 9762 184 10027 35021;35022;35023;35024 52737;52738;52739;52740;52741;52742;52743;52744;52745;52746;52747;52748;52749 52749 13 QSGESIDIITR FILTAKYNACILEYKQSGESIDIITRAHGN LEYKQSGESIDIITRAHGNVQDRIGRPSET K Q S T R A 0 1 0 1 0 1 1 1 0 3 0 0 0 0 0 2 1 0 0 0 0 0 11 0 1217.6252 Q16531;F5GY55;B7Z2A1;F5H2L3;F5GWI0;F5GZY8;F5GYG8 Q16531 93 103 DDB1 DNA damage-binding protein 1 yes no 2 0.003655 73.781 2 1 0.84375 1.1241 8.9997 3 Median 0.86168 1.1499 3.2135 2 0 Median 0.67514 0.98891 NaN 1 0 Median 46750000 25196000 21554000 33438000 17409000 16029000 13312000 7786400 5525300 9763 1520 10028 35025;35026;35027 52750;52751;52752 52751 3 QSGSLPLSSLTHVLR PYTEETSYENSLLVKQSGSLPLSSLTHVLR QSGSLPLSSLTHVLRSLTPNARGIFRLLIK K Q S L R S 0 1 0 0 0 1 0 1 1 0 4 0 0 0 1 4 1 0 0 1 0 0 15 0 1593.8839 A0A024R411;Q13416;B4DYU9 A0A024R411 468 482 ORC2L;ORC2 Origin recognition complex subunit 2 yes no 3 0.042171 16.685 1 0.6264 0.93627 NaN 1 Median NaN NaN NaN 0 0 Median 0.6264 0.93627 NaN 1 0 Median 6933400 5874500 1058900 0 0 0 6933400 5874500 1058900 9764 114 10029 35028 52753 52753 1 QSGYGGQTKPIFR KDSLYAQGKRRYDRKQSGYGGQTKPIFRKK RKQSGYGGQTKPIFRKKAKTTKKIVLRLEC K Q S F R K 0 1 0 0 0 2 0 3 0 1 0 1 0 1 1 1 1 0 1 0 0 0 13 1 1437.7365 J3KQN4;Q969Q0;P83881;H0Y5B4;H7BZ11;H7BY91;H0Y3V9 J3KQN4 81 93 RPL36A;RPL36AL;RPL36A-HNRNPH2 60S ribosomal protein L36a-like;60S ribosomal protein L36a yes no 2 0.025136 79.283 1 2.2462 3.0207 NaN 1 Median 2.2462 3.0207 NaN 1 0 Median NaN NaN NaN 0 0 Median 9092400 2837100 6255300 9092400 2837100 6255300 0 0 0 9765 1136 10030 35029 52754 52754 1 QSILNSLSR VLAVIQVCLEGEISRQSILNSLSRGKKASG EGEISRQSILNSLSRGKKASGDLIPWTVSE R Q S S R G 0 1 1 0 0 1 0 0 0 1 2 0 0 0 0 3 0 0 0 0 0 0 9 0 1016.5615 Q9H0A0;A0A087WV29 Q9H0A0 588 596 NAT10 N-acetyltransferase 10 yes no 2 3.7241E-07 154.12 5 2 0.64228 1.0382 6.0094 3 Median 0.75428 1.0382 NaN 1 0 Median 0.6139 0.99031 7.5718 2 0 Median 193360000 86543000 106820000 87208000 25132000 62075000 106160000 61411000 44744000 9766 1730 10031 35030;35031;35032;35033;35034;35035;35036 52755;52756;52757;52758;52759;52760;52761;52762 52757 8 QSLAQSHLPAQPDISPNIFEAVK GEERALCLVDVKKVKQSLAQSHLPAQPDIS PAQPDISPNIFEAVKGCHLFGAGKIENGLC K Q S V K G 3 0 1 1 0 3 1 0 1 2 2 1 0 1 3 3 0 0 0 1 0 0 23 0 2489.2914 H7BYJ3;O14578 H7BYJ3 1277 1299 CIT Citron Rho-interacting kinase yes no 3 0.035925 12.682 1 0.87383 1.1123 NaN 1 Median 0.87383 1.1123 NaN 1 0 Median NaN NaN NaN 0 0 Median 6541800 4588200 1953600 6541800 4588200 1953600 0 0 0 9767 1116 10032 35037 52763 52763 1 QSLEASLAETEGR VQALEIELQSQLALKQSLEASLAETEGRYC LKQSLEASLAETEGRYCVQLSQIQAQISAL K Q S G R Y 2 1 0 0 0 1 3 1 0 0 2 0 0 0 0 2 1 0 0 0 0 0 13 0 1389.6736 CON__P13645;P13645;CON__P02535-1 CON__P13645 387 399 KRT10 Keratin, type I cytoskeletal 10 yes no 2 3.0619E-17 171.92 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66198000 66198000 0 18052000 18052000 0 48146000 48146000 0 + 9768 960 10033 35038;35039 52764;52765;52766 52764 3 QSLETICLLLAYK ESNYLFLGDYVDRGKQSLETICLLLAYKIK GKQSLETICLLLAYKIKYPENFFLLRGNHE K Q S Y K I 1 0 0 0 1 1 1 0 0 1 4 1 0 0 0 1 1 0 1 0 0 0 13 0 1550.8378 A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;A0A087WYY5;P62136;A0A140VJS9;B3KXM2;E9PMD7;V9HW04;P62140;B4DJ75;B7ZB67;E7ETD8;C9J9S3;C9JP48;B4E163 V9HW04 99 111 PPP1CC;PPP1CA;HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 2 4.9367E-34 218.49 4 0.96684 1.2132 7.2514 4 Median 0.96684 1.2132 7.2514 4 0 Median NaN NaN NaN 0 0 Median 191640000 96472000 95164000 191640000 96472000 95164000 0 0 0 9769 1396;1397;279 10034 35040;35041;35042;35043 52767;52768;52769;52770;52771;52772;52773;52774;52775 52767 9 QSLEYLEQVR RAALGRMCTVIKRQKQSLEYLEQVRQHLSR IKRQKQSLEYLEQVRQHLSRLPTIDPNTRT K Q S V R Q 0 1 0 0 0 2 2 0 0 0 2 0 0 0 0 1 0 0 1 1 0 0 10 0 1263.6459 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;B4DHR2;O60747;Q5T3R7 Q53GS0 146 155 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 4.2621E-08 146.79 4 2 0.7607 1.0774 3.4837 5 Median 0.77955 1.0563 4.1768 3 0 Median 0.70156 1.0894 1.5613 2 0 Median 125710000 75273000 50442000 79610000 48282000 31328000 46105000 26991000 19114000 9770 975 10035 35044;35045;35046;35047;35048;35049 52776;52777;52778;52779;52780;52781;52782;52783 52781 8 QSLHTYLR IESFSSRVVSLSEYRQSLHTYLRSKMSQVA VSLSEYRQSLHTYLRSKMSQVAPSLSALIG R Q S L R S 0 1 0 0 0 1 0 0 1 0 2 0 0 0 0 1 1 0 1 0 0 0 8 0 1016.5403 A8K9K6;O00567;A0PJ92;H0YDU4;H0Y653 A8K9K6 279 286 NOP56 Nucleolar protein 56 yes no 2;3 0.0076974 98.458 2 1 0.73735 1.0273 NaN 1 Median 0.73735 1.0273 NaN 1 0 Median NaN NaN NaN 0 0 Median 83358000 48395000 34963000 83358000 48395000 34963000 0 0 0 9771 647 10036 35050;35051;35052 52784;52785;52786 52785 3 QSLPPGLAVK YTLVITDKEKAEKLKQSLPPGLAVKELK__ AEKLKQSLPPGLAVKELK____________ K Q S V K E 1 0 0 0 0 1 0 1 0 0 2 1 0 0 2 1 0 0 0 1 0 0 10 0 1008.5968 A0A024R8P8;P63173 A0A024R8P8 58 67 RPL38 60S ribosomal protein L38 yes no 2 0.0025774 90.709 2 2 1.0485 1.4332 47.762 4 Median 0.75744 0.94455 2.0261 2 0 Median 1.4396 2.1595 1.0385 2 0 Median 70624000 37008000 33617000 49671000 28008000 21663000 20953000 8999400 11954000 9772 201 10037 35053;35054;35055;35056 52787;52788;52789;52790;52791;52792;52793;52794;52795;52796;52797 52793 11 QSNNVLVYDLLK NILSKHQNSALHFAKQSNNVLVYDLLKNHL FAKQSNNVLVYDLLKNHLETLSRVAEETIK K Q S L K N 0 0 2 1 0 1 0 0 0 0 3 1 0 0 0 1 0 0 1 2 0 0 12 0 1404.7613 Q99549 Q99549 709 720 MPHOSPH8 M-phase phosphoprotein 8 yes yes 2 0.026591 67.214 1 0.74562 0.96931 NaN 1 Median 0.74562 0.96931 NaN 1 0 Median NaN NaN NaN 0 0 Median 1801600 1096900 704700 1801600 1096900 704700 0 0 0 9773 1705 10038 35057 52798;52799 52799 2 QSPLGFEVHDEITVTR TKASVSITFDNSDKKQSPLGFEVHDEITVT SPLGFEVHDEITVTRQVVIGGRNKYLINGV K Q S T R Q 0 1 0 1 0 1 2 1 1 1 1 0 0 1 1 1 2 0 0 2 0 0 16 0 1826.9163 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q05D74;Q6P712 A0A024R158 90 105 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2;3 1.8778E-10 127.18 6 2 0.70972 1.0041 25.362 8 Median 0.70972 0.97159 28.523 6 0 Median 0.70597 1.086 3.5364 2 0 Median 316270000 176320000 139950000 275030000 152650000 122380000 41243000 23667000 17576000 9774 50 10039 35058;35059;35060;35061;35062;35063;35064;35065 52800;52801;52802;52803;52804;52805;52806;52807;52808;52809;52810 52804 11 QSPSPSEVSQSPGR RKHKKKGRQSRPANKQSPSPSEVSQSPGRE KQSPSPSEVSQSPGREVMSYAQAQRMVEVD K Q S G R E 0 1 0 0 0 2 1 1 0 0 0 0 0 0 3 5 0 0 0 1 0 0 14 0 1441.6797 P55201;C9JDK5;C9JHC0 P55201 74 87 BRPF1 Peregrin yes no 2 0.021317 85.845 1 1 0.60389 0.75517 NaN 1 Median NaN NaN NaN 0 0 Median 0.60389 0.75517 NaN 1 0 Median 1602200 970410 631750 0 0 0 1602200 970410 631750 9775 1379 10040 35066;35067 52811;52812 52811 2 QSQAINDLLEAIYPSVDK PSLQMDDNLPDVNDKQSQAINDLLEAIYPS AINDLLEAIYPSVDKREYIIKLEPIETNQN K Q S D K R 2 0 1 2 0 2 1 0 0 2 2 1 0 0 1 2 0 0 1 1 0 0 18 0 2003.0211 Q2TB10;B7Z4V7;C9JHX9;A0A087WXB4;C9K0M9;Q49A13;Q4G0T8 Q2TB10 109 126 ZNF800 Zinc finger protein 800 yes no 2 0.03521 33.304 1 1.0811 1.3499 NaN 1 Median 1.0811 1.3499 NaN 1 0 Median NaN NaN NaN 0 0 Median 1012600 448090 564490 1012600 448090 564490 0 0 0 9776 1530 10041 35068 52813 52813 0 QSQAINDLLEAIYPSVDKR PSLQMDDNLPDVNDKQSQAINDLLEAIYPS INDLLEAIYPSVDKREYIIKLEPIETNQNA K Q S K R E 2 1 1 2 0 2 1 0 0 2 2 1 0 0 1 2 0 0 1 1 0 0 19 1 2159.1222 Q2TB10;B7Z4V7;C9JHX9;A0A087WXB4;C9K0M9;Q49A13;Q4G0T8 Q2TB10 109 127 ZNF800 Zinc finger protein 800 yes no 3 0.03857 33.707 1 0.80682 1.0979 NaN 1 Median 0.80682 1.0979 NaN 1 0 Median NaN NaN NaN 0 0 Median 3088900 1407400 1681500 3088900 1407400 1681500 0 0 0 9777 1530 10042 35069 52814 52814 1 QSQQEAEEEEREEEEEAQIIQR KLYYDTDYGSKSRGRQSQQEAEEEEREEEE EEEREEEEEAQIIQRRLAQALQEDDFGVAW R Q S Q R R 2 2 0 0 0 5 10 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 22 1 2716.206 Q9NQZ2 Q9NQZ2 149 170 UTP3 Something about silencing protein 10 yes yes 3 5.1607E-38 127.17 3 2 0.67182 1.0631 9.5815 5 Median 0.76698 1.0631 12.807 3 0 Median 0.6575 1.0246 6.1863 2 0 Median 195800000 115280000 80525000 110980000 64731000 46250000 84822000 50547000 34274000 9778 1755 10043 35070;35071;35072;35073;35074 52815;52816;52817;52818;52819;52820;52821;52822;52823;52824;52825;52826 52821 12 QSSSTNYTNELK SIKDRMAKYQAAVSKQSSSTNYTNELKASG VSKQSSSTNYTNELKASGGEIKIHKMEQKE K Q S L K A 0 0 2 0 0 1 1 0 0 0 1 1 0 0 0 3 2 0 1 0 0 0 12 0 1370.6314 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VRN8 F8VQE1 121 132 LIMA1 LIM domain and actin-binding protein 1 yes no 2 2.1891E-72 234.67 5 1 0.6917 0.88541 28.481 5 Median 0.69155 0.92056 4.276 4 0 Linear 1.0797 1.6287 NaN 1 0 Median 182670000 109760000 72903000 174310000 105950000 68358000 8357300 3812500 4544800 9779 834 10044 35075;35076;35077;35078;35079;35080 52827;52828;52829;52830;52831;52832;52833;52834;52835;52836;52837;52838 52827 12 QSSSYGPHGYGSGR QSPSPSRGRHESGSRQSSSYGPHGYGSGRS RQSSSYGPHGYGSGRSSSRGPYESGSGHSS R Q S G R S 0 1 0 0 0 1 0 4 1 0 0 0 0 0 1 4 0 0 2 0 0 0 14 0 1438.6226 CON__Q86YZ3;Q86YZ3 CON__Q86YZ3 554 567 HRNR Hornerin yes no 3 0.021515 46.408 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 9780 973 10045 35081 52839 52839 1 QSSVTQVTEQSPK RWDDEPHISASVAVKQSSVTQVTEQSPKVQ VKQSSVTQVTEQSPKVQSRYTKESASSILA K Q S P K V 0 0 0 0 0 3 1 0 0 0 0 1 0 0 1 3 2 0 0 2 0 0 13 0 1417.7049 Q14966;D6W5H1;A8K583;A0A096LPH6;B4DF54;C9JWN0 Q14966 118 130 ZNF638 Zinc finger protein 638 yes no 2 2.328E-05 126.66 2 1.0675 1.3553 NaN 1 Median 1.0675 1.3553 NaN 1 0 Median NaN NaN NaN 0 0 Median 1637900 567230 1070700 1637900 567230 1070700 0 0 0 9781 1498 10046 35082;35083 52840;52841 52840 2 QSVEADINGLR ADDFRLKYENEVALRQSVEADINGLRRVLD VALRQSVEADINGLRRVLDELTLTKADLEM R Q S L R R 1 1 1 1 0 1 1 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1200.6099 CON__P13645;P13645;CON__P02535-1 CON__P13645 246 256 KRT10 Keratin, type I cytoskeletal 10 no no 2 0.013209 101.65 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5865600 5865600 0 2701600 2701600 0 3164000 3164000 0 + 9782 960 10047 35084;35085 52842;52843 52842 2 QSVEADINGLRR ADDFRLKYENEVALRQSVEADINGLRRVLD ALRQSVEADINGLRRVLDELTLTKADLEMQ R Q S R R V 1 2 1 1 0 1 1 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 12 1 1356.711 CON__P13645;P13645;CON__P02535-1 CON__P13645 246 257 KRT10 Keratin, type I cytoskeletal 10 no no 2;3 1.8718E-72 228.84 6 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 159130000 159130000 0 134960000 134960000 0 24173000 24173000 0 + 9783 960 10048 35086;35087;35088;35089;35090;35091;35092 52844;52845;52846;52847;52848;52849;52850;52851 52845 8 QSVENDIHGLR ADDFRVKYETELAMRQSVENDIHGLRKVID LAMRQSVENDIHGLRKVIDDTNITRLQLET R Q S L R K 0 1 1 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1266.6317 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965 F8VZY9 176 186 KRT18 Keratin, type I cytoskeletal 18 yes no 3 0.017724 22.329 1 0.24102 0.32354 NaN 1 Median 0.24102 0.32354 NaN 1 0 Median NaN NaN NaN 0 0 Median 15980000 12914000 3066800 15980000 12914000 3066800 0 0 0 9784 252 10049 35093 52852 52852 1 QSVENDIHGLRK ADDFRVKYETELAMRQSVENDIHGLRKVID AMRQSVENDIHGLRKVIDDTNITRLQLETE R Q S R K V 0 1 1 1 0 1 1 1 1 1 1 1 0 0 0 1 0 0 0 1 0 0 12 1 1394.7266 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965 F8VZY9 176 187 KRT18 Keratin, type I cytoskeletal 18 yes no 2;3 4.2167E-24 187.97 8 2 0.23308 0.3073 112.47 8 Median 0.21489 0.28474 13.809 6 0 Median 2.0628 3.1612 6.7598 2 0 Median 889380000 710420000 178960000 876930000 706010000 170910000 12451000 4405000 8045800 9785 252 10050 35094;35095;35096;35097;35098;35099;35100;35101;35102;35103 52853;52854;52855;52856;52857;52858;52859;52860;52861;52862;52863;52864;52865;52866;52867;52868 52855 16 QSVFAILR VQLPESMEDDGLSERQSVFAILRQAELVPA DDGLSERQSVFAILRQAELVPATVNDYREK R Q S L R Q 1 1 0 0 0 1 0 0 0 1 1 0 0 1 0 1 0 0 0 1 0 0 8 0 932.54435 O75691 O75691 673 680 UTP20 Small subunit processome component 20 homolog yes yes 2 0.027774 53.166 1 1 1.6781 2.308 NaN 1 Median 1.6781 2.308 NaN 1 0 Median NaN NaN NaN 0 0 Median 6536000 1902800 4633100 4461000 1902800 2558200 2075000 0 2075000 9786 1207 10051 35104;35105 52869;52870 52870 2 QTAAQLILK IAFPSIGSGRNGFPKQTAAQLILKAISSYF RNGFPKQTAAQLILKAISSYFVSTMSSSIK K Q T L K A 2 0 0 0 0 2 0 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 9 0 984.59678 O75367;Q59FH0;B4DJC3 O75367 324 332 H2AFY Core histone macro-H2A.1;Histone H2A yes no 1;2 1.9168E-27 219.54 8 2 0.79172 1.0491 3.9309 9 Median 0.80541 1.0491 4.492 7 0 Median 0.66518 1.0509 1.5882 2 0 Median 2022000000 1183400000 838620000 1689000000 987700000 701340000 332970000 195690000 137270000 9787 1198 10052 35106;35107;35108;35109;35110;35111;35112;35113;35114;35115 52871;52872;52873;52874;52875;52876;52877;52878;52879;52880;52881;52882;52883;52884;52885;52886;52887;52888 52873 18 QTALYTLK QRKKKEGEEEQAINRQTALYTLKLLCKNFG EEQAINRQTALYTLKLLCKNFGAENPDPFV R Q T L K L 1 0 0 0 0 1 0 0 0 0 2 1 0 0 0 0 2 0 1 0 0 0 8 0 936.52803 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8;Q8N7L7 B2RWN5 1668 1675 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.027409 82.279 3 2 0.83977 1.0331 24.123 5 Median 0.92846 1.1661 14.85 3 0 Median 0.54582 0.79856 1.2305 2 0 Median 59221000 33934000 25287000 45588000 25293000 20294000 13634000 8640600 4992900 9788 748 10053 35116;35117;35118;35119;35120 52889;52890;52891;52892;52893 52891 5 QTAPSGLSTLPQR ______________________________ GRQTAPSGLSTLPQRVLRKEPVTPSALVLM R Q T Q R V 1 1 0 0 0 2 0 1 0 0 2 0 0 0 2 2 2 0 0 0 0 0 13 0 1354.7205 B2RC06;Q96GD4;J3KTD6;J3KRF8 B2RC06 15 27 AURKB Aurora kinase B no no 2 1.6251E-08 105.46 1 1 0.98914 1.3528 NaN 1 Median 0.98914 1.3528 NaN 1 0 Median NaN NaN NaN 0 0 Median 61837000 19989000 41848000 39601000 19989000 19612000 22236000 0 22236000 9789 731;1686 10054 35121;35122 52894;52895;52896 52895 3 QTASVTLQAIAAQNAAVQAVNAHSNILK VKIESLAKSLEDALRQTASVTLQAIAAQNA NAAVQAVNAHSNILKAAMDNSEIAGEKKSA R Q T L K A 8 0 3 0 0 4 0 0 1 2 2 1 0 0 0 2 2 0 0 3 0 0 28 0 2831.5254 B4DS66;C9J406;H7C463;Q16891;B9A067;B4DQY2;B4DT20;Q05DN3;B4E2B5 Q16891 230 257 IMMT MICOS complex subunit MIC60 no no 3 5.8826E-21 115.81 4 0.53949 0.68556 7.3042 4 Median 0.53949 0.68556 7.3042 4 0 Median NaN NaN NaN 0 0 Median 67922000 42575000 25347000 67922000 42575000 25347000 0 0 0 9790 1524;854 10055 35123;35124;35125;35126 52897;52898;52899;52900;52901;52902 52898 6 QTATQLLK KVPPAINQFTQALDRQTATQLLKLAHKYRP FTQALDRQTATQLLKLAHKYRPETKQEKKQ R Q T L K L 1 0 0 0 0 2 0 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 8 0 901.52328 P62424;Q5T8U3 P62424 90 97 RPL7A 60S ribosomal protein L7a yes no 2 9.4944E-05 134.81 4 2 0.67473 0.95904 12.304 6 Median 0.78083 1.0241 14.419 4 0 Median 0.55459 0.88384 5.6368 2 0 Median 1077300000 612480000 464860000 935140000 522720000 412420000 142200000 89764000 52434000 9791 1411 10056 35127;35128;35129;35130;35131;35132 52903;52904;52905;52906;52907;52908;52909;52910;52911;52912;52913;52914;52915 52911 13 QTDVGITHFR MGHVLIPQSDLRWSKQTDVGITHFRSGMSH LRWSKQTDVGITHFRSGMSHEEDQLIPNLY K Q T F R S 0 1 0 1 0 1 0 1 1 1 0 0 0 1 0 0 2 0 0 1 0 0 10 0 1172.5938 Q6P2Q9;B4DK16 Q6P2Q9 1345 1354 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 0.014139 63.408 2 0.63917 0.87606 18.153 2 Median 0.63917 0.87606 18.153 2 0 Median NaN NaN NaN 0 0 Median 13333000 7685000 5648300 13333000 7685000 5648300 0 0 0 9792 1592 10057 35133;35134 52916;52917 52917 2 QTELFAHFIQPAAQK KMQTDRANRFEYLLKQTELFAHFIQPAAQK QTELFAHFIQPAAQKTPTSPLKMKPGRPRI K Q T Q K T 3 0 0 0 0 3 1 0 1 1 1 1 0 2 1 0 1 0 0 0 0 0 15 0 1727.8995 O60264;B7ZAX9;B4DZC0;Q4W5G3 O60264 98 112 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2;3 0.00046416 71.513 4 2.9184 3.6682 32.066 4 Median 2.9184 3.6682 32.066 4 0 Median NaN NaN NaN 0 0 Median 88001000 26661000 61340000 88001000 26661000 61340000 0 0 0 9793 1189 10058 35135;35136;35137;35138 52918;52919;52920;52921 52921 4 QTFEAAILTQLHPR PHGDRKSCEMGLQLRQTFEAAILTQLHPRS RQTFEAAILTQLHPRSQIDIYVQVLQADGG R Q T P R S 2 1 0 0 0 2 1 0 1 1 2 0 0 1 1 0 2 0 0 0 0 0 14 0 1623.8733 E9PI41;Q9NPD3 E9PI41 128 141 EXOSC4 Exosome complex component RRP41 yes no 3 0.013152 33.842 1 2 0.68623 0.96007 54.036 2 Median 1.025 1.4068 NaN 1 0 Median 0.45944 0.65518 NaN 1 0 Median 26282000 17183000 9098400 12302000 6575900 5726300 13979000 10607000 3372100 9794 1033 10059 35139;35140;35141 52922;52923;52924 52924 3 QTFLLQTTK YTTSANRAKLLAKNRQTFLLQTTKLTRLAR LLAKNRQTFLLQTTKLTRLARRMCRDLLQP R Q T T K L 0 0 0 0 0 2 0 0 0 0 2 1 0 1 0 0 3 0 0 0 0 0 9 0 1078.6023 A0A024R534;O94776 A0A024R534 452 460 MTA2 Metastasis-associated protein MTA2 yes no 2 0.0021096 117.81 3 2 0.95365 1.3375 32.409 4 Median 0.77393 0.97537 13.167 2 0 Median 1.1152 1.6831 1.0229 2 0 Median 59080000 31416000 27664000 33365000 18950000 14415000 25715000 12467000 13249000 9795 133 10060 35142;35143;35144;35145;35146 52925;52926;52927;52928;52929;52930 52928 6 QTGEGVGPQEYTLLK IYSPKDGQPCMDHDRQTGEGVGPQEYTLLK QTGEGVGPQEYTLLKLKVLEPYPSKLSGLK R Q T L K L 0 0 0 0 0 2 2 3 0 0 2 1 0 0 1 0 2 0 1 1 0 0 15 0 1618.8203 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3 B4E266 208 222 LARS Leucine--tRNA ligase, cytoplasmic yes no 2 3.3709E-05 106.79 1 0.51053 0.65956 NaN 1 Median 0.51053 0.65956 NaN 1 0 Median NaN NaN NaN 0 0 Median 1843600 1214000 629540 1843600 1214000 629540 0 0 0 9796 732 10061 35147 52931;52932 52931 2 QTIAAISELTFR LCEEVALDKEMQFSKQTIAAISELTFRQCE FSKQTIAAISELTFRQCENFAKDLEMFARH K Q T F R Q 2 1 0 0 0 1 1 0 0 2 1 0 0 1 0 1 2 0 0 0 0 0 12 0 1348.7351 Q8N2Z9 Q8N2Z9 45 56 APITD1 Centromere protein S yes yes 2 0.0032846 92.866 2 0.64823 0.89296 0.1953 2 Median 0.64823 0.89296 0.1953 2 0 Median NaN NaN NaN 0 0 Median 3200300 1933800 1266500 3200300 1933800 1266500 0 0 0 9797 1635 10062 35148;35149 52933;52934 52934 2 QTIQYIHPADAVK FNKAVIRVNVFREHRQTIQYIHPADAVKLG HRQTIQYIHPADAVKLGQAELVVIDEAAAI R Q T V K L 2 0 0 1 0 2 0 0 1 2 0 1 0 0 1 0 1 0 1 1 0 0 13 0 1482.7831 Q05CW7;Q9H0A0;A0A087WV29 Q9H0A0 366 378 NAT10 N-acetyltransferase 10 no no 2;3 9.4984E-73 229.68 6 3 0.78155 1.0073 9.0126 8 Median 0.81855 1.0528 10.226 5 0 Median 0.64672 0.95553 3.7948 3 0 Median 225240000 127450000 97786000 169980000 93959000 76019000 55262000 33495000 21767000 9798 1730;1443 10063 35150;35151;35152;35153;35154;35155;35156;35157;35158 52935;52936;52937;52938;52939;52940;52941;52942;52943;52944;52945;52946;52947;52948;52949 52939 15 QTLAAFVPLLLK ELIRGICEMELLDGKQTLAAFVPLLLKVCN DGKQTLAAFVPLLLKVCNNPGLYSNPDLSA K Q T L K V 2 0 0 0 0 1 0 0 0 0 4 1 0 1 1 0 1 0 0 1 0 0 12 0 1312.8119 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 1009 1020 NCAPD2 Condensin complex subunit 1 yes no 2 7.7163E-10 145.46 4 0.74702 0.91993 13.978 4 Linear 0.74702 0.91993 13.978 4 0 Linear NaN NaN NaN 0 0 Median 113980000 66212000 47771000 113980000 66212000 47771000 0 0 0 9799 757 10064 35159;35160;35161;35162 52950;52951;52952;52953;52954;52955;52956 52953 6 QTLENERGELANEVK LEQTKRVKANLEKAKQTLENERGELANEVK QTLENERGELANEVKVLLQGKGDSEHKRKK K Q T V K V 1 1 2 0 0 1 4 1 0 0 2 1 0 0 0 0 1 0 0 1 0 0 15 1 1728.8642 A0A024R1N1;P35579;Q86XU5;A0A0U4BW16 A0A024R1N1 1220 1234 MYH9 Myosin-9 no no 2;3 1.6383E-73 254.18 7 0.96213 1.2695 8.7436 7 Median 0.96213 1.2695 8.7436 7 0 Median NaN NaN NaN 0 0 Median 368530000 175480000 193050000 368530000 175480000 193050000 0 0 0 9800 61;490 10065 35163;35164;35165;35166;35167;35168;35169 52957;52958;52959;52960;52961;52962;52963;52964;52965;52966;52967;52968;52969 52962 13 QTLLLRPGGK KVKKDKQNIFEFFERQTLLLRPGGKWYDLE EFFERQTLLLRPGGKWYDLEYSNEYSLKPQ R Q T G K W 0 1 0 0 0 1 0 2 0 0 3 1 0 0 1 0 1 0 0 0 0 0 10 1 1081.6608 B2R5U7;C9J9W7;Q03701 B2R5U7 173 182 CEBPZ CCAAT/enhancer-binding protein zeta no no 3 0.019422 79.986 2 0.6534 0.84894 NaN 1 Median 0.6534 0.84894 NaN 1 0 Median NaN NaN NaN 0 0 Median 13390000 8846700 4543700 13390000 8846700 4543700 0 0 0 9801 693;1441 10066 35170;35171 52970;52971 52970 2 QTLQEDLLR RLNLVEAFVEDAELRQTLQEDLLRRFPDLN EDAELRQTLQEDLLRRFPDLNRLAKKFQRQ R Q T L R R 0 1 0 1 0 2 1 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 9 0 1114.5982 V9H019;Q53GS1;Q53FK0;E9PHA6;P43246;Q53RU4;B4DL39;B4DSB9;V9H068;V9H0D5;V9H023;Q0ZAJ1 V9H019 374 382 MSH2 DNA mismatch repair protein Msh2 yes no 2 0.01946 85.676 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1123300 1123300 0 1123300 1123300 0 0 0 0 9802 1029 10067 35172 52972 52972 1 QTLQSEQPLQVAR TGLAPPALWDLAADKQTLQSEQPLQVARCT DKQTLQSEQPLQVARCTKIINADSEDPKYI K Q T A R C 1 1 0 0 0 4 1 0 0 0 2 0 0 0 1 1 1 0 0 1 0 0 13 0 1496.7947 A0A140VK70;P35998;Q75L23;C9JLS9;B7Z571 A0A140VK70 85 97 PSMC2 26S protease regulatory subunit 7 yes no 2 2.2151E-10 118.28 3 1 0.30226 0.41243 11.338 2 Median 0.30226 0.41243 11.338 2 0 Median NaN NaN NaN 0 0 Median 17179000 10776000 6402900 13848000 10776000 3072700 3330200 0 3330200 9803 510 10068 35173;35174;35175;35176 52973;52974;52975;52976;52977;52978;52979 52977 7 QTLSIYQALK YGTGSVAGVYLPGSRQTLSIYQALKKGLLS LPGSRQTLSIYQALKKGLLSAEVARLLLEA R Q T L K K 1 0 0 0 0 2 0 0 0 1 2 1 0 0 0 1 1 0 1 0 0 0 10 0 1163.655 Q15149;D3DWL0;Q96IE3 Q15149 3839 3848 PLEC;PLEC1 Plectin yes no 2 0.00078969 114.89 4 0.66281 0.82557 NaN 1 Median 0.66281 0.82557 NaN 1 0 Median NaN NaN NaN 0 0 Median 36306000 30547000 5758600 36306000 30547000 5758600 0 0 0 9804 1507 10069 35177;35178;35179;35180 52980;52981;52982;52983 52982 4 QTLSTPGTIILGTIPVPK GKMELFSQLFIQAVRQTLSTPGTIILGTIP STPGTIILGTIPVPKGKPLALVEEIRNRKD R Q T P K G 0 0 0 0 0 1 0 2 0 3 2 1 0 0 3 1 4 0 0 1 0 0 18 0 1835.0768 Q5TDE9;Q5TDF0;Q9BSD7 Q5TDE9 131 148 C1orf57;NTPCR Cancer-related nucleoside-triphosphatase yes no 2 0.00014654 91.812 3 0.41547 0.51328 2.7378 2 Median 0.41547 0.51328 2.7378 2 0 Median NaN NaN NaN 0 0 Median 5329300 4042700 1286600 5329300 4042700 1286600 0 0 0 9805 1575 10070 35181;35182;35183 52984;52985;52986;52987;52988 52988 5 QTLTFFDELHNVGR LAELEEQKIVQAKLKQTLTFFDELHNVGRD KQTLTFFDELHNVGRDHGTGDFRESLVSLV K Q T G R D 0 1 1 1 0 1 1 1 1 0 2 0 0 2 0 0 2 0 0 1 0 0 14 0 1675.8318 A8K1M4;Q9H081 A8K1M4 154 167 MIS12 Protein MIS12 homolog yes no 3 0.018568 22.365 1 2 0.55063 0.74629 47.698 3 Median 0.55063 0.74629 NaN 1 0 Median 0.42024 0.54772 62.547 2 0 Median 11440000 7548600 3890900 5429800 3450100 1979700 6009700 4098500 1911200 9806 579 10071 35184;35185;35186 52989;52990;52991 52991 3 QTMLFSATQTR EEELKQIIKLLPTRRQTMLFSATQTRKVED PTRRQTMLFSATQTRKVEDLARISLKKEPL R Q T T R K 1 1 0 0 0 2 0 0 0 0 1 0 1 1 0 1 3 0 0 0 0 0 11 0 1282.634 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254;Q59FR7;H7C452 Q4ZG72 235 245 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 0.00011195 84.882 2 0.59113 0.9026 0.070519 2 Median NaN NaN NaN 0 0 Median 0.59113 0.9026 0.070519 2 0 Median 38010000 22838000 15172000 0 0 0 38010000 22838000 15172000 9807 242 10072 35187;35188 52992;52993;52994;52995 52993 97 4 QTNLENLDQAFSVAER HRHKPLLIDMNKVYRQTNLENLDQAFSVAE TNLENLDQAFSVAERDLGVTRLLDPEDVDV R Q T E R D 2 1 2 1 0 2 2 0 0 0 2 0 0 1 0 1 1 0 0 1 0 0 16 0 1833.8857 Q15149;E9PMV1 Q15149 350 365 PLEC Plectin yes no 2 9.7596E-34 188.09 4 0.86548 1.1714 12.615 4 Median 0.86548 1.1714 12.615 4 0 Median NaN NaN NaN 0 0 Median 53321000 27371000 25950000 53321000 27371000 25950000 0 0 0 9808 1507 10073 35189;35190;35191;35192 52996;52997;52998;52999 52996 4 QTPAPAASVTGSR AGEDKGIKALKESAKQTPAPAASVTGSRRR AKQTPAPAASVTGSRRRPRAPRESAQAIED K Q T S R R 3 1 0 0 0 1 0 1 0 0 0 0 0 0 2 2 2 0 0 1 0 0 13 0 1241.6364 P46013 P46013 2772 2784 MKI67 Antigen KI-67 yes yes 2 2.9575E-27 205.52 3 2 0.98311 1.5791 12.91 4 Median 1.0122 1.392 16.529 2 0 Median 0.98311 1.6162 1.9731 2 0 Median 646080000 293230000 352850000 345030000 142940000 202090000 301050000 150290000 150760000 9809 1342 10074 35193;35194;35195;35196;35197 53000;53001;53002;53003;53004;53005;53006;53007;53008 53000 9 QTPDFHTVIGDTVTGLLER EKHIEVEVRKFLALKQTPDFHTVIGDTVTG FHTVIGDTVTGLLERCKAEPSFYPRNCLMQ K Q T E R C 0 1 0 2 0 1 1 2 1 1 2 0 0 1 1 0 4 0 0 2 0 0 19 0 2098.0695 Q9H8H0;J3QR28 Q9H8H0 425 443 NOL11 Nucleolar protein 11 yes no 3 2.4061E-09 96.487 5 1 0.90794 1.3014 3.4569 4 Linear 0.96032 1.2865 4.1499 3 0 Plateau 0.78163 1.2295 NaN 1 0 Median 141440000 74240000 67196000 116370000 57857000 58510000 25068000 16383000 8685400 9810 1743 10075 35198;35199;35200;35201;35202;35203 53009;53010;53011;53012;53013;53014;53015;53016;53017;53018;53019 53016 11 QTQATTLVHQIFGGYLR AMQKACLNGCAKLDRQTQATTLVHQIFGGY QATTLVHQIFGGYLRSRVKCSVCKSVSDTY R Q T L R S 1 1 0 0 0 3 0 2 1 1 2 0 0 1 0 0 3 0 1 1 0 0 17 0 1932.0217 A0A024R8V6;Q9P275;A0A075B784;Q9H9C5;E9PEW0;K7EMM6 A0A024R8V6 234 250 USP36;DUB1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 3 0.00044888 81.327 3 0.67755 1.5455 29.667 3 Plateau 0.67755 1.5455 29.667 3 0 Plateau NaN NaN NaN 0 0 Median 16068000 9064700 7003200 16068000 9064700 7003200 0 0 0 9811 205 10076 35204;35205;35206 53020;53021;53022;53023;53024 53022 5 QTQVSVLPEGGETPLFK LKTASDFITKMDYPKQTQVSVLPEGGETPL QVSVLPEGGETPLFKQFFKNWRDPDQTDGL K Q T F K Q 0 0 0 0 0 2 2 2 0 0 2 1 0 1 2 1 2 0 0 2 0 0 17 0 1828.9571 B7Z4U6;B7Z992;A0A0A0MS51;B7Z9A0;B7Z6N2;A0A0A0MT01;CON__Q3SX14;P06396;B7Z2X4 B7Z4U6 340 356 GSN Gelsolin yes no 2 2.908E-10 158.86 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 9812 392 10077 35207 53025 53025 1 QTSAILQQHYGGDIPASVAELVALPGVGPK IYPVGFWRSKVKYIKQTSAILQQHYGGDIP ASVAELVALPGVGPKMAHLAMAVAWGTVSG K Q T P K M 4 0 0 1 0 3 1 4 1 2 3 1 0 0 3 2 1 0 1 3 0 0 30 0 3015.6029 H3BRL9;E5KTI5;P78549;H3BPD5 H3BRL9 157 186 NTHL1 Endonuclease III-like protein 1 yes no 3 1.1336E-05 70.67 4 0.61693 0.79301 13.781 4 Median 0.61693 0.79301 13.781 4 0 Median NaN NaN NaN 0 0 Median 16123000 9693600 6429500 16123000 9693600 6429500 0 0 0 9813 1003 10078 35208;35209;35210;35211 53026;53027;53028;53029;53030 53026 5 QTTLAFKPIK LEKKQKREPGTKTKKQTTLAFKPIKKGKKR TKTKKQTTLAFKPIKKGKKRNPWSDSESDR K Q T I K K 1 0 0 0 0 1 0 0 0 1 1 2 0 1 1 0 2 0 0 0 0 0 10 1 1145.6808 P11388 P11388 1277 1286 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 0.0051209 67.726 3 3 0.85259 1.2031 11.161 6 Median 0.87655 1.0814 9.622 3 0 Median 0.75394 1.2043 8.8911 3 0 Median 183130000 99254000 83871000 92262000 49883000 42379000 90863000 49371000 41492000 9814 1256 10079 35212;35213;35214;35215;35216;35217 53031;53032;53033;53034;53035;53036;53037;53038;53039;53040 53033 10 QTTLAFKPIKK LEKKQKREPGTKTKKQTTLAFKPIKKGKKR KTKKQTTLAFKPIKKGKKRNPWSDSESDRS K Q T K K G 1 0 0 0 0 1 0 0 0 1 1 3 0 1 1 0 2 0 0 0 0 0 11 2 1273.7758 P11388 P11388 1277 1287 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 2.4355E-08 164.68 5 1 0.88944 1.1084 20.636 6 Median 0.90128 1.0747 16.188 5 0 Median 0.83782 1.4648 NaN 1 0 Median 299250000 154700000 144540000 249630000 128450000 121170000 49617000 26247000 23370000 9815 1256 10080 35218;35219;35220;35221;35222;35223 53041;53042;53043;53044;53045;53046;53047;53048;53049;53050 53044 9 QTTSRPPPAGGRPKPQPK DFLKVPDQGAAGVRRQTTSRPPPAGGRPKP SRPPPAGGRPKPQPKPKPQVPQCKALYAYD R Q T P K P 1 2 0 0 0 2 0 2 0 0 0 2 0 0 6 1 2 0 0 0 0 0 18 3 1899.0439 Q4KMR3;Q12965;H0YNB0 Q4KMR3 1031 1048 MYO1E Unconventional myosin-Ie yes no 3 0.0016346 73.758 1 0.35667 0.4005 NaN 1 Median 0.35667 0.4005 NaN 1 0 Median NaN NaN NaN 0 0 Median 1340600 1077700 262860 1340600 1077700 262860 0 0 0 9816 1459 10081 35224 53051 53051 1 QTVADQVLVGSYCVFSNQGGLVHPK TEEILADVLKVEVFRQTVADQVLVGSYCVF SYCVFSNQGGLVHPKTSIEDQDELSSLLQV R Q T P K T 1 0 1 1 1 3 0 3 1 0 2 1 0 1 1 2 1 0 1 5 0 0 25 0 2702.3486 P56537 P56537 140 164 EIF6 Eukaryotic translation initiation factor 6 yes yes 3 3.1385E-31 144.95 3 1 0.89992 1.119 8.1512 4 Linear 0.88536 1.1299 8.0071 3 0 Plateau 0.62293 0.96027 NaN 1 0 Median 229530000 125350000 104180000 206740000 111110000 95633000 22790000 14243000 8547400 9817 1382 10082 35225;35226;35227;35228 53052;53053;53054;53055;53056;53057;53058 53052 7 QTVAVGVIK SDYPPLGRFAVRDMRQTVAVGVIKAVDKKA AVRDMRQTVAVGVIKAVDKKAAGAGKVTKS R Q T I K A 1 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 1 0 0 3 0 0 9 0 913.55967 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;P68104;A8K9C4;Q5VTE0;Q96RE1;A0A087WVQ9;Q53GE9;Q53GA1;Q53G85;B4DV42;Q8IUB0;Q504Z0;Q53HR1;B4DNE0;Q9NZS6;Q53G89;Q6P4C9;B4E2C5;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q16577;Q05639;Q14222;Q96EB3;Q2F837 Q6IPT9 431 439 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1;EEF1A2;EEF1A Elongation factor 1-alpha;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 yes no 2 0.0070185 68.214 1 2 3.8944 6.0783 142.99 3 Median 0.39718 0.52783 NaN 1 0 Median 3.9682 6.2777 4.5643 2 0 Median 1091500000 657300000 434230000 871560000 613030000 258530000 219970000 44265000 175700000 9818 1421 10083 35229;35230;35231 53059;53060;53061;53062;53063 53060 5 QTYFLPVIGLVDAEK SQRKGKCAVIKTSTRQTYFLPVIGLVDAEK QTYFLPVIGLVDAEKLKPGDLVGVNKDSYL R Q T E K L 1 0 0 1 0 1 1 1 0 1 2 1 0 1 1 0 1 0 1 2 0 0 15 0 1691.9134 E9PKD5;E9PM69;R4GNH3;A8K781;A0A140VK42;P17980;E9PMD8;E9PLG2 E9PKD5 112 126 PSMC3 26S protease regulatory subunit 6A yes no 2 5.5796E-10 141.37 3 0.32451 0.41114 19.728 3 Median 0.32451 0.41114 19.728 3 0 Median NaN NaN NaN 0 0 Median 20212000 13802000 6409800 20212000 13802000 6409800 0 0 0 9819 507 10084 35232;35233;35234 53064;53065;53066;53067 53064 4 QTYSTEPNNLK MVVRNCSSFLIKRNKQTYSTEPNNLKARNS KRNKQTYSTEPNNLKARNSFRYNGLIHRKT K Q T L K A 0 0 2 0 0 1 1 0 0 0 1 1 0 0 1 1 2 0 1 0 0 0 11 0 1293.6201 P46779;H0YKD8;H0YMF4;Q59F34;H0YLP6 P46779 23 33 RPL28 60S ribosomal protein L28 yes no 2 1.2361E-18 196.79 4 2 0.70903 0.96265 3.0709 6 Median 0.72698 0.95514 2.1055 4 0 Median 0.63051 0.99909 0.93854 2 0 Median 1244400000 738220000 506140000 1066400000 632130000 434290000 177940000 106090000 71848000 9820 1346 10085 35235;35236;35237;35238;35239;35240 53068;53069;53070;53071;53072;53073;53074;53075;53076;53077;53078;53079 53074 12 QVAITGQLGVKPQTGNSIPLTATNFR TAAVIQNVTGQNIIKQVAITGQLGVKPQTG PQTGNSIPLTATNFRIQGKDVLRLPPSSIT K Q V F R I 2 1 2 0 0 3 0 3 0 2 2 1 0 1 2 1 4 0 0 2 0 0 26 1 2710.4766 A0A024R3K9;A0A024R3N2;Q6P4R8;E9PQ59;B4DSL1 A0A024R3K9 921 946 NFRKB Nuclear factor related to kappa-B-binding protein yes no 3 5.7479E-05 63.883 2 0.55995 0.72198 NaN 1 Median 0.55995 0.72198 NaN 1 0 Median NaN NaN NaN 0 0 Median 5600800 3516600 2084100 5600800 3516600 2084100 0 0 0 9821 101 10086 35241;35242 53080;53081 53081 2 QVASHVGLHSASIPGILALDLCPSDTNK VPEELVKPEELSKYRQVASHVGLHSASIPG PGILALDLCPSDTNKILTGGADKNVVVFDK R Q V N K I 3 0 1 2 1 1 0 2 2 2 4 1 0 0 2 4 1 0 0 2 0 0 28 0 2899.4862 Q9UMS4;F5GY56 Q9UMS4 209 236 PRPF19 Pre-mRNA-processing factor 19 yes no 4 0.00016156 51.473 2 0.61696 0.77487 25.857 2 Median 0.61696 0.77487 25.857 2 0 Median NaN NaN NaN 0 0 Median 19187000 11719000 7468000 19187000 11719000 7468000 0 0 0 9822 1795 10087 35243;35244 53082;53083;53084 53083 3 QVCQLPGLFSYAQHIASIDGR YEPLPPTIGRNIFGRQVCQLPGLFSYAQHI GLFSYAQHIASIDGRRGLFTGLTPRLCSGV R Q V G R R 2 1 0 1 1 3 0 2 1 2 2 0 0 1 1 2 0 0 1 1 0 0 21 0 2359.1743 Q9Y6C9;Q53G34;E9PIE4 Q9Y6C9 47 67 MTCH2 Mitochondrial carrier homolog 2 yes no 3 1.0915E-08 103.9 2 0.47415 0.64795 1.7426 2 Median 0.47415 0.64795 1.7426 2 0 Median NaN NaN NaN 0 0 Median 9692400 6943500 2748900 9692400 6943500 2748900 0 0 0 9823 1833 10088 35245;35246 53085;53086 53085 2 QVDLIDLVR AAAQLLESSVQNLFKQVDLIDLVRWKILKD VQNLFKQVDLIDLVRWKILKDKHIPQFLQE K Q V V R W 0 1 0 2 0 1 0 0 0 1 2 0 0 0 0 0 0 0 0 2 0 0 9 0 1069.6132 Q9UKN8;Q05CN7 Q9UKN8 536 544 GTF3C4 General transcription factor 3C polypeptide 4 yes no 2 0.0034018 104.06 4 0.59295 0.84073 26.629 3 Median 0.59295 0.84073 26.629 3 0 Median NaN NaN NaN 0 0 Median 11866000 6926000 4939600 11866000 6926000 4939600 0 0 0 9824 1789 10089 35247;35248;35249;35250 53087;53088;53089;53090;53091 53089 5 QVDSEHMHQNVPTEEQR EKKDISKSEAKLSRKQVDSEHMHQNVPTEE DSEHMHQNVPTEEQRTNKSTGGEHKKSDRK K Q V Q R T 0 1 1 1 0 3 3 0 2 0 0 0 1 0 1 1 1 0 0 2 0 0 17 0 2062.9127 A4LAA3;P46100;A0A096LNL9;A0A096LNW1;A0A096LNN3 A4LAA3 468 484 ATRX Transcriptional regulator ATRX yes no 3 0.010223 77.746 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 230570 230570 0 230570 230570 0 0 0 0 9825 556 10090 35251 53092 53092 196 1 QVEHPLLSGLLYPGLQALDEEYLK VTQHDSKKAGAEVVKQVEHPLLSGLLYPGL LLYPGLQALDEEYLKVDAQFGGIDQRKIFT K Q V L K V 1 0 0 1 0 2 3 2 1 0 7 1 0 0 2 1 0 0 2 1 0 0 24 0 2724.4374 A0A0S2Z4R1;P54577;A0A0C4DGZ5 A0A0S2Z4R1 155 178 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 3 9.2691E-05 78.717 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 134350 134350 0 134350 134350 0 0 0 0 9826 468 10091 35252 53093 53093 1 QVEPLDPPAGSAPGEHVFVK SQGMLLCASIEGINRQVEPLDPPAGSAPGE DPPAGSAPGEHVFVKGYEKGQPDEELKPKK R Q V V K G 2 0 0 1 0 1 2 2 1 0 1 1 0 1 4 1 0 0 0 3 0 0 20 0 2073.0531 A0A0S2Z4R1;P54577 A0A0S2Z4R1 451 470 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes no 3 9.1811E-05 106.44 2 0.45814 0.57919 NaN 1 Median 0.45814 0.57919 NaN 1 0 Median NaN NaN NaN 0 0 Median 5685400 4626100 1059400 5685400 4626100 1059400 0 0 0 9827 468 10092 35253;35254 53094;53095 53095 2 QVETEEAGVVTTATASVNLK TPKAARRGRKRKAEKQVETEEAGVVTTATA EAGVVTTATASVNLKVSPKRGRPAATEVKI K Q V L K V 3 0 1 0 0 1 3 1 0 0 1 1 0 0 0 1 4 0 0 4 0 0 20 0 2046.0481 O75475;Q05CM9 O75475 156 175 PSIP1 PC4 and SFRS1-interacting protein yes no 2 2.2377E-35 181.71 4 1 0.67931 1.0045 NaN 1 Median NaN NaN NaN 0 0 Median 0.67931 1.0045 NaN 1 0 Median 10754000 5920000 4834300 894380 0 894380 9859900 5920000 3939900 9828 1201 10093 35255;35256;35257;35258;35259 53096;53097;53098;53099;53100 53096 5 QVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHR PFEQAKKVITMFVQRQVFAENKDEIALVLF PLSGGDQYQNITVHRHLMLPDFDLLEDIES R Q V H R H 2 1 3 4 0 3 2 4 1 2 3 1 0 2 1 1 3 0 1 3 0 0 37 1 4060.9767 P13010;Q53TC2;C9JZ81 P13010 45 81 XRCC5 X-ray repair cross-complementing protein 5 yes no 4 3.7039E-22 82.918 3 0.58624 0.79573 5.3384 3 Median 0.58624 0.79573 5.3384 3 0 Median NaN NaN NaN 0 0 Median 40727000 23688000 17039000 40727000 23688000 17039000 0 0 0 9829 1262 10094 35260;35261;35262 53101;53102;53103;53104;53105;53106 53105 6 QVFGTHTTQK LNRNGDYKETQYSFKQVFGTHTTQKELFDV QYSFKQVFGTHTTQKELFDVVANPLVNDLI K Q V Q K E 0 0 0 0 0 2 0 1 1 0 0 1 0 1 0 0 3 0 0 1 0 0 10 0 1145.5829 H7BYN4;Q02241;H0YME6;H0YMJ4 H7BYN4 77 86 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 0.02689 50.607 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2582600 2582600 0 2582600 2582600 0 0 0 0 9830 1117 10095 35263 53107 53107 1 QVFTNAEVYNCR CGSYRSVQEFLTDMKQVFTNAEVYNCRGSH DMKQVFTNAEVYNCRGSHVLSCMVKTEQCL K Q V C R G 1 1 2 0 1 1 1 0 0 0 0 0 0 1 0 0 1 0 1 2 0 0 12 0 1499.6827 Q9UIG0 Q9UIG0 1410 1421 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 8.1657E-11 159.79 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36372000 0 36372000 36372000 0 36372000 0 0 0 9831 1786 10096 35264;35265;35266;35267 53108;53109;53110;53111 53109 4 QVGVNPTSIDSVVIGK VQLKAECNKGYVKVKQVGVNPTSIDSVVIG VGVNPTSIDSVVIGKDQEVKLQPGQVLHME K Q V G K D 0 0 1 1 0 1 0 2 0 2 0 1 0 0 1 2 1 0 0 4 0 0 16 0 1611.8832 F8W6G5;F5HRF8;A0A0A0MRW7;Q7Z2E3 F8W6G5 74 89 APTX Aprataxin yes no 2 0.0015444 69.864 2 0.73928 0.94807 NaN 1 Median 0.73928 0.94807 NaN 1 0 Median NaN NaN NaN 0 0 Median 3911100 1879900 2031300 3911100 1879900 2031300 0 0 0 9832 391 10097 35268;35269 53112;53113 53113 2 QVHPDTGISSK SRKESYSVYVYKVLKQVHPDTGISSKAMGI KVLKQVHPDTGISSKAMGIMNSFVNDIFER K Q V S K A 0 0 0 1 0 1 0 1 1 1 0 1 0 0 1 2 1 0 0 1 0 0 11 0 1167.5884 B2R4S9;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;B4DR52;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;O60814;Q0D2M2;A8K9J7;P57053;A0A024RCJ2;Q16778;P33778;P23527;P06899;Q8N257 B2R4S9 48 58 HIST1H2BI;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;H2BFS;HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B no no 1;2;3 4.4673E-71 240.1 22 5 0.70876 1.3267 14.797 18 Linear 0.73757 0.96428 16.239 14 0 Median 0.5661 0.87458 3.7767 4 0 Median 8213300000 6755500000 1457800000 7054000000 5642500000 1411600000 1159300000 1113000000 46265000 9833 25;295 10098 35270;35271;35272;35273;35274;35275;35276;35277;35278;35279;35280;35281;35282;35283;35284;35285;35286;35287;35288;35289;35290;35291;35292;35293;35294;35295;35296 53114;53115;53116;53117;53118;53119;53120;53121;53122;53123;53124;53125;53126;53127;53128;53129;53130;53131;53132;53133;53134;53135;53136;53137;53138;53139;53140;53141;53142;53143;53144;53145;53146;53147;53148;53149;53150;53151;53152 53146 37 QVLDNLTMEK QNLRQGVDADINGLRQVLDNLTMEKSDLEM INGLRQVLDNLTMEKSDLEMQYETLQEELM R Q V E K S 0 0 1 1 0 1 1 0 0 0 2 1 1 0 0 0 1 0 0 1 0 0 10 0 1189.6013 CON__P35527;P35527;K7EQQ3 CON__P35527 262 271 KRT9 Keratin, type I cytoskeletal 9 yes no 2 0.0073817 117.53 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23145000 23145000 0 7925200 7925200 0 15220000 15220000 0 + 9834 963 10099 35297;35298 53153;53154 53153 341 2 QVLEPSFR LADITVVCTLLWLYKQVLEPSFRQAFPNTN TLLWLYKQVLEPSFRQAFPNTNRWFLTCIN K Q V F R Q 0 1 0 0 0 1 1 0 0 0 1 0 0 1 1 1 0 0 0 1 0 0 8 0 974.51853 Q53YD7;P26641 Q53YD7 174 181 EEF1G Elongation factor 1-gamma yes no 2 0.025113 87.181 1 0.25866 0.35563 NaN 1 Median 0.25866 0.35563 NaN 1 0 Median NaN NaN NaN 0 0 Median 7168000 5411600 1756500 7168000 5411600 1756500 0 0 0 9835 1299 10100 35299 53155 53155 1 QVLIRPCSK DALKSINNAEKRGKRQVLIRPCSKVIVRFL EKRGKRQVLIRPCSKVIVRFLTVMMKHGYI R Q V S K V 0 1 0 0 1 1 0 0 0 1 1 1 0 0 1 1 0 0 0 1 0 0 9 1 1099.6172 B2R4W8;P62244;I3L3P7;A8K7H3;I3L246;H3BN98;H3BV27;H3BT37;I3L303 B2R4W8 24 32 hCG_1994130;RPS15A 40S ribosomal protein S15a yes no 2;3 0.00047436 109.48 4 0.83639 1.0838 19.287 4 Median 0.83639 1.0838 19.287 4 0 Median NaN NaN NaN 0 0 Median 49266000 25539000 23726000 49266000 25539000 23726000 0 0 0 9836 688 10101 35300;35301;35302;35303 53156;53157;53158;53159;53160 53156 5 QVLLGRK GRGHLLGRLAAIVAKQVLLGRKVVVVRCEG RLAAIVAKQVLLGRKVVVVRCEGINISGNF K Q V R K V 0 1 0 0 0 1 0 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 7 1 812.52322 Q53H34;P40429;Q5QTS3;M0QYS1;B4DNC8;Q9BSQ6 Q53H34 26 32 RPL13A 60S ribosomal protein L13a no no 2 0.032439 67.035 1 0.85807 1.1191 NaN 1 Median 0.85807 1.1191 NaN 1 0 Median NaN NaN NaN 0 0 Median 30414000 15836000 14578000 30414000 15836000 14578000 0 0 0 9837 1332;1712 10102 35304 53161 53161 1 QVLSGSGESVTK EKILQLQEKKKDLAKQVLSGSGESVTKLTL LAKQVLSGSGESVTKLTLADLRVLFGI___ K Q V T K L 0 0 0 0 0 1 1 2 0 0 1 1 0 0 0 3 1 0 0 2 0 0 12 0 1190.6143 A0A024R0F1;Q9UNY4;X6RI15 A0A024R0F1 1139 1150 TTF2 Transcription termination factor 2 yes no 2 0.006274 84.31 2 0.76678 0.96074 0.1083 2 Median 0.76678 0.96074 0.1083 2 0 Median NaN NaN NaN 0 0 Median 11547000 6696300 4850600 11547000 6696300 4850600 0 0 0 9838 33 10103 35305;35306 53162;53163 53162 2 QVLVAPGNAGTACSEK EHTLAWKLAQSHHVKQVLVAPGNAGTACSE VLVAPGNAGTACSEKISNTAISISDHTALA K Q V E K I 3 0 1 0 1 1 1 2 0 0 1 1 0 0 1 1 1 0 0 2 0 0 16 0 1600.7879 Q3B7A7;Q59HH3;P22102;Q15374;F8WD69;C9JBJ1;C9JTV6;C9JZG2;C9JKQ7 Q3B7A7 29 44 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 1.0007E-24 178.71 3 0.23773 0.29993 2.7785 2 Median 0.23773 0.29993 2.7785 2 0 Median NaN NaN NaN 0 0 Median 27933000 24379000 3554000 27933000 24379000 3554000 0 0 0 9839 1289 10104 35307;35308;35309 53164;53165;53166;53167 53164 4 QVPDTSVQETDR SGQGDSLYPVGYLDKQVPDTSVQETDRILV LDKQVPDTSVQETDRILVEKVQRLQ_____ K Q V D R I 0 1 0 2 0 2 1 0 0 0 0 0 0 0 1 1 2 0 0 2 0 0 12 0 1373.6423 S4R329;H0YK61;H0YNK0;H0YNK8;H0YLP8;A0A0S2Z598;A0A024R9N3;Q5J8M3 S4R329 51 62 EMC4;TMEM85 ER membrane protein complex subunit 4 yes no 2 0.012724 50.353 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1770300 1770300 0 1770300 1770300 0 0 0 0 9840 227 10105 35310 53168 53168 1 QVPFNEVR DSLTVVFENNWQPERQVPFNEVRLPPPPDI NNWQPERQVPFNEVRLPPPPDIKKEISEGD R Q V V R L 0 1 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 2 0 0 8 0 987.51378 A0A0F7KYT8;A0A0F7L0Q8;B4DXZ6;A0A0F7L1S3;P51114;C9JAJ4 A0A0F7KYT8 41 48 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 2 0.03052 81.191 1 0.63721 0.88109 NaN 1 Median 0.63721 0.88109 NaN 1 0 Median NaN NaN NaN 0 0 Median 5657400 3068000 2589400 5657400 3068000 2589400 0 0 0 9841 438 10106 35311 53169 53169 1 QVPLNPDLNQTK KDVSCPIRQVPTGKKQVPLNPDLNQTKPGN GKKQVPLNPDLNQTKPGNFPSLAVSSNEFE K Q V T K P 0 0 2 1 0 2 0 0 0 0 2 1 0 0 2 0 1 0 0 1 0 0 12 0 1365.7252 J3QQW9;Q15022 J3QQW9 189 200 SUZ12 Polycomb protein SUZ12 yes no 2 6.0099E-06 97.965 3 2 0.79822 1.0326 24.62 3 Median 0.92831 1.1889 19.932 2 0 Median 0.56721 0.8381 NaN 1 0 Median 33694000 12303000 21391000 19803000 6497300 13305000 13891000 5806000 8085500 9842 1143 10107 35312;35313;35314;35315;35316 53170;53171;53172;53173;53174;53175;53176 53174 7 QVQEENFEYQDFK LENIFAESKIKSFRRQVQEENFEYQDFKRM RRQVQEENFEYQDFKRMVNRAPEFLKLKHC R Q V F K R 0 0 1 1 0 3 3 0 0 0 0 1 0 2 0 0 0 0 1 1 0 0 13 0 1702.7475 Q15058 Q15058 1482 1494 KIF14 Kinesin-like protein KIF14 yes yes 2 0.00028641 108.35 1 0.59642 0.74063 NaN 1 Median 0.59642 0.74063 NaN 1 0 Median NaN NaN NaN 0 0 Median 1226300 606970 619350 1226300 606970 619350 0 0 0 9843 1504 10108 35317 53177 53177 1 QVQFHQGFGDLAVLK LKKENWGPWSAGGSRQVQFHQGFGDLAVLK QVQFHQGFGDLAVLKPSNKVLQVSIGPGLP R Q V L K P 1 0 0 1 0 3 0 2 1 0 2 1 0 2 0 0 0 0 0 2 0 0 15 0 1685.8889 Q4KMR3;Q12965 Q4KMR3 896 910 MYO1E Unconventional myosin-Ie yes no 3 0.0012275 40.242 1 0.623 0.79023 NaN 1 Median 0.623 0.79023 NaN 1 0 Median NaN NaN NaN 0 0 Median 10327000 5713400 4613900 10327000 5713400 4613900 0 0 0 9844 1459 10109 35318 53178 53178 1 QVQQLLGK LKSFLRECKVANYCRQVQQLLGKVQENSAY KVANYCRQVQQLLGKVQENSAYICSRRQRV R Q V G K V 0 0 0 0 0 3 0 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 8 0 912.53927 Q9Y3T9;B3KNC3;Q9H9J5;Q8NAK7;B4DY21 Q9Y3T9 569 576 NOC2L Nucleolar complex protein 2 homolog yes no 2 0.021287 57.811 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4725100 4725100 0 4725100 4725100 0 0 0 0 9845 1820 10110 35319 53179 53179 1 QVQSLTCEVDALK DALRQAKQESTEYRRQVQSLTCEVDALKGT RRQVQSLTCEVDALKGTNESLERQMREMEE R Q V L K G 1 0 0 1 1 2 1 0 0 0 2 1 0 0 0 1 1 0 0 2 0 0 13 0 1489.7446 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;B0YJC5;Q5JVS8 V9HWE1 322 334 HEL113;VIM Vimentin yes no 2 2.5378E-25 193.83 4 0.69412 0.90388 10.125 4 Median 0.69412 0.90388 10.125 4 0 Median NaN NaN NaN 0 0 Median 354210000 209700000 144520000 354210000 209700000 144520000 0 0 0 9846 1245 10111 35320;35321;35322;35323 53180;53181;53182;53183;53184;53185;53186 53181 7 QVQVALETAQR EAERRLRQAEVERARQVQVALETAQRSAEA ERARQVQVALETAQRSAEAELQSKRASFAE R Q V Q R S 2 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 11 0 1241.6728 Q15149 Q15149 1699 1709 PLEC Plectin yes yes 2 5.7983E-06 107.15 4 0.91772 1.2218 6.7239 3 Median 0.91772 1.2218 6.7239 3 0 Median NaN NaN NaN 0 0 Median 43924000 21822000 22103000 43924000 21822000 22103000 0 0 0 9847 1507 10112 35324;35325;35326;35327 53187;53188;53189;53190;53191;53192 53191 6 QVSASELHTSGILGPETLR TEERLSKVSFRGLRRQVSASELHTSGILGP SELHTSGILGPETLRDLAQGTKTLQEVTEM R Q V L R D 1 1 0 0 0 1 2 2 1 1 3 0 0 0 1 3 2 0 0 1 0 0 19 0 1994.0433 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 2716 2734 EPPK1 Epiplakin no no 3 7.8233E-07 63.918 1 0.6947 0.91522 NaN 1 Median 0.6947 0.91522 NaN 1 0 Median NaN NaN NaN 0 0 Median 8670900 5281900 3389000 8670900 5281900 3389000 0 0 0 9848 373;1386 10113 35328 53193 53193 1 QVSDDLTER FDAGELITQRELVSRQVSDDLTERAATFGL RELVSRQVSDDLTERAATFGLILDDVSLTH R Q V E R A 0 1 0 2 0 1 1 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 9 0 1061.4989 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0;C9JW96;C9JZ20;E7ESE2;E9PCW0 Q6PUJ7 149 157 HEL-S-54e;PHB Prohibitin yes no 2 0.0040117 101.72 4 0.53807 0.7443 5.8762 3 Median 0.53807 0.7443 5.8762 3 0 Median NaN NaN NaN 0 0 Median 160320000 110030000 50295000 160320000 110030000 50295000 0 0 0 9849 600 10114 35329;35330;35331;35332 53194;53195;53196;53197;53198 53195 5 QVSDILYK IVDSPVMVQAKQNTKQVSDILYKAKGEDVK QAKQNTKQVSDILYKAKGEDVKHKYTMSPD K Q V Y K A 0 0 0 1 0 1 0 0 0 1 1 1 0 0 0 1 0 0 1 1 0 0 8 0 964.52295 A0A087X1N7;P20929;Q14214 A0A087X1N7 1255 1262 NEB Nebulin yes no 1 0.0123 105.12 1 0.76124 0.95739 NaN 1 Median 0.76124 0.95739 NaN 1 0 Median NaN NaN NaN 0 0 Median 8867400 4493900 4373600 8867400 4493900 4373600 0 0 0 9850 372 10115 35333 53199 53199 1 QVSDLISVLR KTGTAYTFFTPNNIKQVSDLISVLREANQA PNNIKQVSDLISVLREANQAINPKLLQLVE K Q V L R E 0 1 0 1 0 1 0 0 0 1 2 0 0 0 0 2 0 0 0 2 0 0 10 0 1128.6503 B4DN41;J3KTA4;B5BUE6;P17844;B4DNG2 B4DN41 441 450 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2 0.0019288 104.01 3 0.39365 0.54041 5.8283 3 Median 0.39365 0.54041 5.8283 3 0 Median NaN NaN NaN 0 0 Median 26172000 19553000 6619200 26172000 19553000 6619200 0 0 0 9851 833 10116 35334;35335;35336 53200;53201;53202;53203;53204 53204 5 QVSGGEDEIQQLQK VTSKMDQGSIERILKQVSGGEDEIQQLQKA KQVSGGEDEIQQLQKALLDYLDENTETDPS K Q V Q K A 0 0 0 1 0 4 2 2 0 1 1 1 0 0 0 1 0 0 0 1 0 0 14 0 1557.7635 Q6IEH8;Q6KC79 Q6IEH8 1640 1653 NIPBL Nipped-B-like protein yes no 2 0.0026994 45.764 2 0.63127 0.86431 6.4775 2 Median NaN NaN NaN 0 0 Median 0.63127 0.86431 6.4775 2 0 Median 7723500 4535100 3188400 0 0 0 7723500 4535100 3188400 9852 1586 10117 35337;35338 53205;53206 53206 2 QVSSHIQVLAR ARYIKLRTGKTRTRKQVSSHIQVLARRKSR RTRKQVSSHIQVLARRKSRDFHSKLKDQTA K Q V A R R 1 1 0 0 0 2 0 0 1 1 1 0 0 0 0 2 0 0 0 2 0 0 11 0 1236.6939 H0YE88;P28347;H0YGS2;H0YEJ9;A0A0A0MRF3;Q96G15;Q53GI4;Q71U35;A0A024QZE2;A0A024QZD8;Q15561;Q99594;Q15562;A0A0S2Z4F2;H0YG62;A0A0S2Z4E5;D3DUQ6 H0YE88 89 99 TEAD1;TEAD4;TEAD3;TEAD2 Transcriptional enhancer factor TEF-1;Transcriptional enhancer factor TEF-3;Transcriptional enhancer factor TEF-5;Transcriptional enhancer factor TEF-4 yes no 3 0.0037154 72.2 2 2 0.62318 0.86038 11.243 4 Median 0.70171 0.93513 11.127 2 0 Median 0.57257 0.8121 7.5098 2 0 Median 49316000 28699000 20618000 33406000 18641000 14765000 15910000 10057000 5853000 9853 1099 10118 35339;35340;35341;35342 53207;53208;53209;53210;53211 53211 5 QVTITGSAASISLAQYLINAR AQIKIANPVEGSSGRQVTITGSAASISLAQ SAASISLAQYLINARLSSEKGMGCS_____ R Q V A R L 4 1 1 0 0 2 0 1 0 3 2 0 0 0 0 3 2 0 1 1 0 0 21 0 2176.1852 Q53SS8;Q15365 Q53SS8 326 346 PCBP1 Poly(rC)-binding protein 1 yes no 2 2.2155E-98 244.57 4 0.2601 0.34669 18.416 4 Median 0.2601 0.34669 18.416 4 0 Median NaN NaN NaN 0 0 Median 37184000 30263000 6920900 37184000 30263000 6920900 0 0 0 9854 1509 10119 35343;35344;35345;35346 53212;53213;53214;53215;53216;53217;53218 53212 7 QVTITGSAASISLAQYLINVR AQIKIANPVEGSTDRQVTITGSAASISLAQ SAASISLAQYLINVRLSSETGGMGSS____ R Q V V R L 3 1 1 0 0 2 0 1 0 3 2 0 0 0 0 3 2 0 1 2 0 0 21 0 2204.2165 Q15366;H3BSS4;H3BRU6;F8VZX2;B4DRD7 Q15366 334 354 PCBP2 Poly(rC)-binding protein 2 no no 2 1.6161E-22 97.86 2 0.31961 0.4243 5.7953 2 Median 0.31961 0.4243 5.7953 2 0 Median NaN NaN NaN 0 0 Median 33376000 26788000 6587800 33376000 26788000 6587800 0 0 0 9855 1510;1064 10120 35347;35348 53219;53220;53221;53222 53222 4 QVTQEEGQQLAR PMILIGNKADLDHQRQVTQEEGQQLARQLK HQRQVTQEEGQQLARQLKVTYMEASAKIRM R Q V A R Q 1 1 0 0 0 4 2 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 12 0 1385.6899 E9PK85;P62070 E9PK85 117 128 RRAS2 Ras-related protein R-Ras2 yes no 2 0.0067265 56.202 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2944700 0 2944700 0 0 0 2944700 0 2944700 9856 1038 10121 35349;35350 53223;53224 53224 2 QVTQLAIDTEER ILNKLTPQMFQQLMKQVTQLAIDTEERLKG LMKQVTQLAIDTEERLKGVIDLIFEKAISE K Q V E R L 1 1 0 1 0 2 2 0 0 1 1 0 0 0 0 0 2 0 0 1 0 0 12 0 1401.71 E7EX73;B4DSI9;E9PGM1;E7EUU4;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637;C9JF13;C9J6B6;C9K073;C9J2Z7 E7EX73 619 630 EIF4G1;EIF4G1 variant protein Eukaryotic translation initiation factor 4 gamma 1 yes no 2 0.0013183 104.82 3 1.7248 2.3478 NaN 1 Median 1.7248 2.3478 NaN 1 0 Median NaN NaN NaN 0 0 Median 31288000 10660000 20628000 31288000 10660000 20628000 0 0 0 9857 747 10122 35351;35352;35353 53225;53226;53227 53225 3 QVVNIPSFIVR HARVLIRQRHIRVRKQVVNIPSFIVRLDSQ RVRKQVVNIPSFIVRLDSQKHIDFSLRSPY K Q V V R L 0 1 1 0 0 1 0 0 0 2 0 0 0 1 1 1 0 0 0 3 0 0 11 0 1270.7398 A0A024R4M0;P46781;A5D904 A0A024R4M0 140 150 RPS9 40S ribosomal protein S9 yes no 2 8.2438E-12 148.69 5 2 0.74581 1.0278 19.836 6 Median 0.7647 1.0549 7.8564 4 0 Median 0.46239 0.75385 5.0567 2 0 Median 1068900000 622680000 446250000 910260000 515370000 394900000 158670000 107310000 51356000 9858 124 10123 35354;35355;35356;35357;35358;35359;35360 53228;53229;53230;53231;53232;53233;53234;53235;53236;53237;53238;53239;53240;53241 53233 14 QVVQGLLSETYLEAHR SVTGIFLPILRTGFRQVVQGLLSETYLEAH VVQGLLSETYLEAHRIVKMNKSEDDESGAG R Q V H R I 1 1 0 0 0 2 2 1 1 0 3 0 0 0 0 1 1 0 1 2 0 0 16 0 1841.9636 B2RBA6;A0A0S2Z4A5;P33993;B3KUD7;B4DDF5;C6EMX8 B2RBA6 287 302 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 3 0.0020564 32.191 1 1 2.5331 3.2949 NaN 1 Median NaN NaN NaN 0 0 Median 2.5331 3.2949 NaN 1 0 Median 8731800 6096200 2635600 4705300 4705300 0 4026500 1390800 2635600 9859 464 10124 35361;35362 53242;53243;53244 53243 3 QVVSAVTALVEAAER ELVALCRSGRAAALRQVVSAVTALVEAAER QVVSAVTALVEAAERQPLQATFRGLRKQVS R Q V E R Q 4 1 0 0 0 1 2 0 0 0 1 0 0 0 0 1 1 0 0 4 0 0 15 0 1541.8413 P58107 P58107 1500 1514 EPPK1 Epiplakin yes yes 2 0.034344 72.705 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 667570 0 667570 667570 0 667570 0 0 0 9860 1386 10125 35363 53245 53245 1 QVVSLQKR PQCSYRPLQAPLRSRQVVSLQKRKRTSCEP QAPLRSRQVVSLQKRKRTSCEPAGQAWAWC R Q V K R K 0 1 0 0 0 2 0 0 0 0 1 1 0 0 0 1 0 0 0 2 0 0 8 1 956.57671 A0A087WTD3 A0A087WTD3 58 65 FSTL3 yes yes 3 0.002075 75.854 1 0.79594 1.0346 NaN 1 Median 0.79594 1.0346 NaN 1 0 Median NaN NaN NaN 0 0 Median 18564000 10192000 8371500 18564000 10192000 8371500 0 0 0 9861 333 10126 35364 53246 53246 1 QVVTGTVLTR FRLVSRPKPLSAVPKQVVTGTVLTRSVFIN SAVPKQVVTGTVLTRSVFINNVLSKIGEVW K Q V T R S 0 1 0 0 0 1 0 1 0 0 1 0 0 0 0 0 3 0 0 3 0 0 10 0 1072.6241 Q8WYP5;B3KVE5 Q8WYP5 1042 1051 AHCTF1 Protein ELYS yes no 2 0.0012184 86.882 4 2 0.62302 0.88455 10.779 4 Median 0.72505 0.97827 12.902 2 0 Median 0.586 0.8577 3.0181 2 0 Median 86254000 49568000 36687000 58397000 32357000 26041000 27857000 17211000 10646000 9862 1670 10127 35365;35366;35367;35368;35369;35370 53247;53248;53249;53250;53251;53252;53253;53254 53252 8 QVYIPTYTK QQKRLKAAEADSKLKQVYIPTYTKPNPNQI ADSKLKQVYIPTYTKPNPNQIISVGSKPGM K Q V T K P 0 0 0 0 0 1 0 0 0 1 0 1 0 0 1 0 2 0 2 1 0 0 9 0 1111.5914 A0A024R534;O94776 A0A024R534 333 341 MTA2 Metastasis-associated protein MTA2 yes no 2 0.023072 70.816 3 2 0.72829 0.92549 33.461 5 Median 0.72829 0.92478 8.0509 3 0 Plateau 1.0446 1.5557 4.9656 2 0 Median 39908000 22184000 17724000 23693000 13964000 9728800 16215000 8219900 7994800 9863 133 10128 35371;35372;35373;35374;35375 53255;53256;53257;53258;53259 53257 5 QWGWTQGR FRRYNGGVGRCAQAKQWGWTQGRWPKKSAE GRCAQAKQWGWTQGRWPKKSAEFLLHMLKN K Q W G R W 0 1 0 0 0 2 0 2 0 0 0 0 0 0 0 0 1 2 0 0 0 0 8 0 1017.4781 A0A087WXM6;J3QQT2;J3KRX5;A0A024R261;A0A0A6YYL6;P18621;J3QLC8;A0A0A0MRF8;J3KRB3;A0A087WWH0;J3QS96;A0A087WY81 A0A087WXM6 75 82 RPL17;hCG_24487;RPL17-C18orf32 60S ribosomal protein L17 yes no 2 0.024227 54.611 1 0.22257 0.33698 NaN 1 Median NaN NaN NaN 0 0 Median 0.22257 0.33698 NaN 1 0 Median 18105000 15276000 2828700 0 0 0 18105000 15276000 2828700 9864 81 10129 35376 53260 53260 1 QWYESHYALPLGR LVKNCIVLIDSTPYRQWYESHYALPLGRKK YRQWYESHYALPLGRKKGAKLTPEEEEILN R Q W G R K 1 1 0 0 0 1 1 1 1 0 2 0 0 0 1 1 0 1 2 0 0 0 13 0 1618.7892 Q5JR94;P62241;Q5JR95 Q5JR94 111 123 RPS8 40S ribosomal protein S8 yes no 2;3 1.9946E-05 79.492 3 2 0.28711 0.45243 5.824 2 Median NaN NaN NaN 0 0 Median 0.28711 0.45243 5.824 2 0 Median 76633000 49934000 26699000 11339000 0 11339000 65294000 49934000 15360000 9865 1399 10130 35377;35378;35379;35380;35381 53261;53262;53263;53264;53265;53266;53267 53267 7 QYAEQGAQVPFR YDENLMKKTAVPPSRQYAEQGAQVPFRTHS PSRQYAEQGAQVPFRTHSLHVQQPPPPQQP R Q Y F R T 2 1 0 0 0 3 1 1 0 0 0 0 0 1 1 0 0 0 1 1 0 0 12 0 1392.6786 Q7Z5J4;A8MXE8 Q7Z5J4 156 167 RAI1 Retinoic acid-induced protein 1 yes no 2 0.00061663 85.731 2 1 0.80836 1.1098 1.3075 3 Median 0.8053 1.118 1.749 2 0 Median 0.86479 1.1098 NaN 1 0 Median 11047000 6202900 4843900 7567200 4288100 3279100 3479700 1914800 1564900 9866 1617 10131 35382;35383;35384 53268;53269;53270 53269 3 QYELVVHTDIDAAK EHFGVEATGEESSIRQYELVVHTDIDAAKV RQYELVVHTDIDAAKVYMGEMGRLKSYENQ R Q Y A K V 2 0 0 2 0 1 1 0 1 1 1 1 0 0 0 0 1 0 1 2 0 0 14 0 1600.8097 B2R6E5;A8K3B4;Q59ED7;H0Y4R2;P16435;Q63HL4;B4DJI8;B4E305;B4DKM8 B2R6E5 247 260 POR;DKFZp686G04235 NADPH--cytochrome P450 reductase yes no 2 0.0089356 54.259 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9867 592 10132 35385 53271 53271 1 QYHVQFFGDAPER LHSYTKLKGQKKSARQYHVQFFGDAPERAW ARQYHVQFFGDAPERAWIFEKSLVAFEGEG R Q Y E R A 1 1 0 1 0 2 1 1 1 0 0 0 0 2 1 0 0 0 1 1 0 0 13 0 1592.7372 O96028;Q05CW4;D6R9V2 O96028 261 273 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 3 3.8625E-06 83.617 2 0.83474 1.1282 23.005 2 Median 0.83474 1.1282 23.005 2 0 Median NaN NaN NaN 0 0 Median 19532000 8925300 10606000 19532000 8925300 10606000 0 0 0 9868 1228 10133 35386;35387 53272;53273 53273 2 QYIGPPSAAAIFK TEKIDVAFVDRADIKQYIGPPSAAAIFKIY IKQYIGPPSAAAIFKIYLSCLEELMKCQII K Q Y F K I 3 0 0 0 0 1 0 1 0 2 0 1 0 1 2 1 0 0 1 0 0 0 13 0 1361.7343 Q15645 Q15645 317 329 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 2 0.0066649 77.288 2 0.42286 0.53687 NaN 1 Median 0.42286 0.53687 NaN 1 0 Median NaN NaN NaN 0 0 Median 9903900 8725600 1178300 9903900 8725600 1178300 0 0 0 9869 1514 10134 35388;35389 53274;53275;53276 53276 3 QYMFSSLK ECLVYVQLPFMEDLRQYMFSSLKNSKKYAP PFMEDLRQYMFSSLKNSKKYAPTEAQLNAV R Q Y L K N 0 0 0 0 0 1 0 0 0 0 1 1 1 1 0 2 0 0 1 0 0 0 8 0 1002.4845 P13010;Q53T09 P13010 432 439 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 0.022652 45.68 1 0.39839 0.58658 NaN 1 Median NaN NaN NaN 0 0 Median 0.39839 0.58658 NaN 1 0 Median 7781100 5655500 2125600 0 0 0 7781100 5655500 2125600 9870 1262 10135 35390 53277 53277 525 1 QYNQTFETHNSTTPLQER LRSRYLDSLKAIVFKQYNQTFETHNSTTPL QTFETHNSTTPLQERSLGLDINMDSRIIHE K Q Y E R S 0 1 2 0 0 3 2 0 1 0 1 0 0 1 1 1 4 0 1 0 0 0 18 0 2193.0087 Q96H22 Q96H22 208 225 CENPN Centromere protein N yes yes 3 0.00050355 75.018 2 1 0.86487 1.218 46.122 2 Median 0.86487 1.218 46.122 2 0 Median NaN NaN NaN 0 0 Median 11382000 7042400 4339900 9728400 5388500 4339900 1653900 1653900 0 9871 1687 10136 35391;35392;35393 53278;53279;53280;53281;53282 53278 5 QYQAGQTVTCFLK TALNTHSVSPMEKIKQYQAGQTVTCFLKKY IKQYQAGQTVTCFLKKYNVVKKWLEVEIAP K Q Y L K K 1 0 0 0 1 3 0 1 0 0 1 1 0 1 0 0 2 0 1 1 0 0 13 0 1542.7501 Q14690 Q14690 1145 1157 PDCD11 Protein RRP5 homolog yes yes 2 1.576E-17 178.54 3 1.0172 1.2506 0.73993 3 Plateau 1.0172 1.2506 0.73993 3 0 Plateau NaN NaN NaN 0 0 Median 36985000 18941000 18044000 36985000 18941000 18044000 0 0 0 9872 1494 10137 35394;35395;35396 53283;53284;53285;53286;53287 53283 5 QYQIDAAIVR VEEQVSTTERVFQDRQYQIDAAIVRIMKMR VFQDRQYQIDAAIVRIMKMRKTLGHNLLVS R Q Y V R I 2 1 0 1 0 2 0 0 0 2 0 0 0 0 0 0 0 0 1 1 0 0 10 0 1175.6299 Q13619;A0A0A0MR50;B2RBV7;B4DKT2;K4DI93;Q13620 Q13619 693 702 CUL4A;CUL4B Cullin-4A;Cullin-4B yes no 2 0.0032404 110.41 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9873 1474 10138 35397 53288 53288 1 QYRAEEQFATQEK QLEEQEQRLRQERDRQYRAEEQFATQEKSR DRQYRAEEQFATQEKSRREEQELWQEEEQK R Q Y E K S 2 1 0 0 0 3 3 0 0 0 0 1 0 1 0 0 1 0 1 0 0 0 13 1 1626.7638 A2RRS3;Q07283 A2RRS3 247 259 TCHH Trichohyalin yes no 2 7.9446E-05 104.05 2 0.74273 0.98377 12.852 2 Median 0.74273 0.98377 12.852 2 0 Median NaN NaN NaN 0 0 Median 133990000 76779000 57213000 133990000 76779000 57213000 0 0 0 9874 539 10139 35398;35399 53289;53290 53289 2 RAADEVLAEAK SAPLEIGLQRSTQVKRAADEVLAEAKKPRI TQVKRAADEVLAEAKKPRIEDEECVRLDKE K R A A K K 4 1 0 1 0 0 2 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 11 1 1171.6197 Q6P1J9;A0A1B0GUB2;B4DV47 Q6P1J9 126 136 CDC73 Parafibromin yes no 2 0.00019682 87.258 3 0.78031 1.0086 NaN 1 Median 0.78031 1.0086 NaN 1 0 Median NaN NaN NaN 0 0 Median 43732000 4644700 39087000 43732000 4644700 39087000 0 0 0 9875 1590 10140 35400;35401;35402 53291;53292;53293;53294 53291 4 RAATLAQELEK NQVKKYHRLKEEASKRAATLAQELEKFNRD EASKRAATLAQELEKFNRDQKADQDRLDLE K R A E K F 3 1 0 0 0 1 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 11 1 1228.6776 Q14683;G8JLG1;Q6P2R1;Q6MZR8;A8K7A6;B7Z709;Q68EN4 Q14683 385 395 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0014428 80.916 4 2 0.53802 0.72465 23.93 6 Median 0.51751 0.6856 6.9902 4 0 Median 0.6894 1.065 9.3541 2 0 Median 57541000 34870000 22671000 37191000 23301000 13890000 20351000 11569000 8781800 9876 1492 10141 35403;35404;35405;35406;35407;35408 53295;53296;53297;53298;53299;53300 53298 6 RACYGVLR AESLRYKLLGGLAVRRACYGVLRFIMESGA LGGLAVRRACYGVLRFIMESGAKGCEVVVS R R A L R F 1 2 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 8 1 993.51782 P23396;Q53G83;E9PL09;A7E2S3;Q9NQS8 P23396 117 124 RPS3 40S ribosomal protein S3 yes no 2 0.0077545 104.21 3 0.70979 0.95381 21.217 3 Median 0.70979 0.95381 21.217 3 0 Median NaN NaN NaN 0 0 Median 90584000 48856000 41727000 90584000 48856000 41727000 0 0 0 9877 1293 10142 35409;35410;35411 53301;53302;53303 53303 3 RAEEIWQQSVIGDYLAR GGEREERGKLPESPKRAEEIWQQSVIGDYL EEIWQQSVIGDYLARFKNDRVKALKAMEMT K R A A R F 2 2 0 1 0 2 2 1 0 2 1 0 0 0 0 1 0 1 1 1 0 0 17 1 2033.033 E9PKP7;P17480;A8K962;B4DNQ1;O00164;B4DLB0;E9PLT2 E9PKP7 450 466 UBTF Nucleolar transcription factor 1 yes no 3 6.9031E-06 62.203 1 0.75941 1.1299 NaN 1 Median NaN NaN NaN 0 0 Median 0.75941 1.1299 NaN 1 0 Median 24064000 13385000 10679000 0 0 0 24064000 13385000 10679000 9878 1039 10143 35412 53304 53304 1 RAEFTVETR AYGPGIEPTGNMVKKRAEFTVETRSAGQGE GNMVKKRAEFTVETRSAGQGEVLVYVEDPA K R A T R S 1 2 0 0 0 0 2 0 0 0 0 0 0 1 0 0 2 0 0 1 0 0 9 1 1107.5673 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98 P21333 301 309 FLNA Filamin-A yes no 2 0.0020713 99.973 4 0.75704 1.032 13.584 4 Median 0.75704 1.032 13.584 4 0 Median NaN NaN NaN 0 0 Median 210810000 115200000 95608000 210810000 115200000 95608000 0 0 0 9879 1287 10144 35413;35414;35415;35416 53305;53306;53307;53308;53309 53307 5 RAEISNAIDQYVTGTIGEDEDLIK HHPQVLSMKFKTGVKRAEISNAIDQYVTGT QYVTGTIGEDEDLIKWKALFEEVPELLTEA K R A I K W 2 1 1 3 0 1 3 2 0 4 1 1 0 0 0 1 2 0 1 1 0 0 24 1 2649.3134 B4DP06;V9HWH7;B2R7P8;P31939;H7C1S2 B4DP06 425 448 HEL-S-70p;ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 3 2.228E-23 137.04 3 0.57741 0.79022 27.777 3 Median 0.57741 0.79022 27.777 3 0 Median NaN NaN NaN 0 0 Median 17365000 10674000 6690100 17365000 10674000 6690100 0 0 0 9880 707 10145 35417;35418;35419 53310;53311;53312;53313;53314 53313 5 RAETHENEPGPLTVGDELLSQFK EEQEPQEMDIDEILKRAETHENEPGPLTVG PGPLTVGDELLSQFKVANFSNMDEDDIELE K R A F K V 1 1 1 1 0 1 4 2 1 0 3 1 0 1 2 1 2 0 0 1 0 0 23 1 2566.2663 O14646 O14646 998 1020 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 3;4 0.00027741 40.723 5 0.61905 0.80596 15.749 5 Median 0.61905 0.80596 15.749 5 0 Median NaN NaN NaN 0 0 Median 38656000 22927000 15729000 38656000 22927000 15729000 0 0 0 9881 1169 10146 35420;35421;35422;35423;35424 53315;53316;53317;53318;53319;53320 53320 6 RAFLIEEQK YGGSMCAKCVRDRIKRAFLIEEQKIVVKVL VRDRIKRAFLIEEQKIVVKVLKAQAQSQKA K R A Q K I 1 1 0 0 0 1 2 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 9 1 1132.6241 A0A024RDH8;P49207;Q5MK14 A0A024RDH8 93 101 RPL34 60S ribosomal protein L34 yes no 2 1.0344E-08 143.37 4 2 0.71117 0.94252 9.0355 6 Median 0.75665 0.99839 6.7776 4 0 Median 0.50023 0.86815 7.1694 2 0 Median 1822500000 1053100000 769420000 1653800000 942520000 711310000 168660000 110540000 58115000 9882 316 10147 35425;35426;35427;35428;35429;35430 53321;53322;53323;53324;53325;53326;53327;53328;53329;53330;53331;53332 53330 12 RAFQLEEGEETEPDCK ISNGDINLSLRKAKKRAFQLEEGEETEPDC AFQLEEGEETEPDCKYSKKHWKSRENNNNN K R A C K Y 1 1 0 1 1 1 5 1 0 0 1 1 0 1 1 0 1 0 0 0 0 0 16 1 1936.8473 P38432 P38432 112 127 COIL Coilin yes yes 3 0.044017 13.627 1 0.6621 0.83769 NaN 1 Median 0.6621 0.83769 NaN 1 0 Median NaN NaN NaN 0 0 Median 5725200 3604900 2120300 5725200 3604900 2120300 0 0 0 9883 1328 10148 35431 53333 53333 1 RAFREIQL RAKFKRKYKVKLVEKRAFREIQL_______ KVKLVEKRAFREIQL_______________ K R A Q L - 1 2 0 0 0 1 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 8 2 1031.5876 Q7L4X7;Q96CS0;Q53YP0;B4E1N4;Q9NZM5;B4DVK1;B4DND9;M0QZ34;M0QYZ9;Q9P0B0 Q7L4X7 467 474 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes no 1 0.043983 10.873 3 0.67612 0.8986 15.285 3 Median 0.67612 0.8986 15.285 3 0 Median NaN NaN NaN 0 0 Median 263380000 159330000 104050000 263380000 159330000 104050000 0 0 0 9884 887 10149 35432;35433;35434 53334;53335;53336;53337 53334 4 RAGELLSDTIYR IGWVPIDSLEVVRAKRAGELLSDTIYRQRP RAKRAGELLSDTIYRQRPETLKFTSITDTP K R A Y R Q 1 2 0 1 0 0 1 1 0 1 2 0 0 0 0 1 1 0 1 0 0 0 12 1 1392.7361 A0A087X1N7;P20929 A0A087X1N7 3652 3663 NEB Nebulin yes no 3 0.030134 47.712 1 0.69254 0.9579 NaN 1 Median 0.69254 0.9579 NaN 1 0 Median NaN NaN NaN 0 0 Median 42037000 26539000 15498000 42037000 26539000 15498000 0 0 0 9885 372 10150 35435 53338 53338 1 RAGELTEDEVER YAHVVLRKADIDLTKRAGELTEDEVERVIT LTKRAGELTEDEVERVITIMQNPRQYKIPD K R A E R V 1 2 0 1 0 0 4 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 12 1 1402.6688 P62269 P62269 55 66 RPS18 40S ribosomal protein S18 yes yes 2;3 1.6337E-51 237.67 8 4 0.8231 1.1195 26.258 12 Median 0.80501 1.1072 4.4846 8 0 Median 1.1647 1.8503 3.6908 4 0 Median 1420400000 764580000 655830000 1232300000 678260000 554000000 188140000 86319000 101820000 9886 1402 10151 35436;35437;35438;35439;35440;35441;35442;35443;35444;35445;35446;35447 53339;53340;53341;53342;53343;53344;53345;53346;53347;53348;53349;53350;53351;53352;53353;53354;53355;53356;53357;53358 53339 20 RAGFVPVYLR GVSYGLTPRLLKFWKRAGFVPVYLRQTPND LKFWKRAGFVPVYLRQTPNDLTGEHSCIML K R A L R Q 1 2 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 1 2 0 0 10 1 1176.6768 Q9H0A0;A0A087WV29 Q9H0A0 725 734 NAT10 N-acetyltransferase 10 yes no 2;3 0.00085777 78.939 6 2 0.77172 1.0817 9.374 8 Median 0.8131 1.0942 11.08 6 0 Median 0.71705 1.0726 0.25075 2 0 Median 156520000 84286000 72237000 123070000 64910000 58158000 33455000 19376000 14079000 9887 1730 10152 35448;35449;35450;35451;35452;35453;35454;35455 53359;53360;53361;53362;53363;53364;53365;53366;53367;53368;53369;53370;53371;53372;53373 53365 15 RAIFATQR DMNKMLDKEDFTMMKRAIFATQRQSFPPVC EDFTMMKRAIFATQRQSFPPVCTHNMLDDS K R A Q R Q 2 2 0 0 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 8 1 961.54575 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6;B7Z255 P13807 430 437 GYS1 Glycogen [starch] synthase, muscle yes no 2 0.0020479 118.74 1 2 0.62051 0.86088 NaN 1 Median 0.62051 0.86088 NaN 1 0 Median NaN NaN NaN 0 0 Median 29178000 23946000 5232100 12749000 7516500 5232100 16429000 16429000 0 9888 1265 10153 35456;35457;35458 53374;53375;53376 53374 3 RAILASER FNIPPSTLSTILKNKRAILASERKYGVAST STILKNKRAILASERKYGVASTCRKTNKLS K R A E R K 2 2 0 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 8 1 914.52976 P07199;Q71VN4 P07199 50 57 CENPB Major centromere autoantigen B yes no 2 0.021976 60.118 1 0.92229 1.2193 NaN 1 Median NaN NaN NaN 0 0 Median 0.92229 1.2193 NaN 1 0 Median 4470500 2051500 2419000 0 0 0 4470500 2051500 2419000 9889 1239 10154 35459 53377 53377 1 RAIQTGEELFFDYR VMMVNGDHRIGIFAKRAIQTGEELFFDYRY KRAIQTGEELFFDYRYSQADALKYVGIERE K R A Y R Y 1 2 0 1 0 1 2 1 0 1 1 0 0 2 0 0 1 0 1 0 0 0 14 1 1743.858 A0A090N8E9;Q15910;S4S3R8;Q75MP9;Q75MQ0;F2YMM1 A0A090N8E9 719 732 EZH2 Histone-lysine N-methyltransferase EZH2 yes no 3 1.7966E-05 91.355 2 0.82333 1.0981 NaN 1 Median 0.82333 1.0981 NaN 1 0 Median NaN NaN NaN 0 0 Median 19230000 10744000 8485900 19230000 10744000 8485900 0 0 0 9890 381 10155 35460;35461 53378;53379;53380 53379 3 RAITYQIAK ENSTEEQALEDQNAKRAITYQIAKNRGLTP EDQNAKRAITYQIAKNRGLTPRRKKIDRNP K R A A K N 2 1 0 0 0 1 0 0 0 2 0 1 0 0 0 0 1 0 1 0 0 0 9 1 1062.6186 Q9NQZ2 Q9NQZ2 409 417 UTP3 Something about silencing protein 10 yes yes 2 0.003606 83.998 4 0.90331 1.1768 7.9196 4 Median 0.90331 1.1768 7.9196 4 0 Median NaN NaN NaN 0 0 Median 114550000 61603000 52947000 114550000 61603000 52947000 0 0 0 9891 1755 10156 35462;35463;35464;35465 53381;53382;53383;53384 53383 4 RALASNTSFFSGCSPIEEEAH ATEYQENKAPGKKKKRALASNTSFFSGCSP TSFFSGCSPIEEEAH_______________ K R A A H - 3 1 1 0 1 0 3 1 1 1 1 0 0 2 1 4 1 0 0 0 0 0 21 1 2309.0383 Q59HG1;O95239;B4DYE2;Q2VIQ3;B3KNC0 Q59HG1 1215 1235 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 3 4.1546E-05 80.733 2 0.80429 1.1282 NaN 1 Median 0.80429 1.1282 NaN 1 0 Median NaN NaN NaN 0 0 Median 7061700 1335000 5726700 7061700 1335000 5726700 0 0 0 9892 1216 10157 35466;35467 53385;53386;53387;53388 53385 4 RALDIPLVK LWAPRPFNLRSGRTRRALDIPLVKNWYREH RSGRTRRALDIPLVKNWYREHCPAGQPVKV R R A V K N 1 1 0 1 0 0 0 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 9 1 1023.6441 Q6P2Q9;I3L0J9 Q6P2Q9 420 428 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.014295 60.59 1 0.46162 0.60008 NaN 1 Median 0.46162 0.60008 NaN 1 0 Median NaN NaN NaN 0 0 Median 10643000 6415100 4227800 10643000 6415100 4227800 0 0 0 9893 1592 10158 35468 53389 53389 1 RALEQQVEEMK KDDVGKSVHELEKSKRALEQQVEEMKTQLE EKSKRALEQQVEEMKTQLEELEDELQATED K R A M K T 1 1 0 0 0 2 3 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 11 1 1359.6816 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1528 1538 MYH9;FLJ00279 Myosin-9 no no 2 5.2066E-07 145.99 3 2 1.3994 1.9314 83.406 5 Median 0.99527 1.3315 33.738 3 0 Median 3.6631 5.8633 2.6868 2 0 Median 43987000 12860000 31127000 14796000 6965000 7830500 29192000 5895400 23296000 9894 61;490 10159;10160 35469;35470;35471;35472;35473 53390;53391;53392;53393;53394;53395;53396 53391 15 7 RALERDPTEDDVESK ______________________________ RALERDPTEDDVESKKIKMERGLLASDLNT K R A S K K 1 2 0 3 0 0 3 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 15 2 1758.8384 A0A024R7K7;A0A024R7M6;Q86YP4;C9JHD7;C9JJK9;V9GYX5;C9JVY3;V9GY85;H7C3H1;C9JMI3;C9JGN4 A0A024R7K7 13 27 GATAD2A Transcriptional repressor p66-alpha yes no 3 0.00010799 61.732 1 0.61266 0.75742 NaN 1 Median 0.61266 0.75742 NaN 1 0 Median NaN NaN NaN 0 0 Median 11035000 5873400 5161300 11035000 5873400 5161300 0 0 0 9895 179 10161 35474 53397 53397 1 RALQTQNSEIVK AAIPHLRRRRGRLPRRALQTQNSEIVKDDE LPRRALQTQNSEIVKDDEGKEDYQFDELNT R R A V K D 1 1 1 0 0 2 1 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 12 1 1385.7627 B4DZG1;Q9Y483;Q96G26 B4DZG1 404 415 MTF2 Metal-response element-binding transcription factor 2 yes no 2 0.047376 33.875 1 0.93399 1.3261 NaN 1 Median NaN NaN NaN 0 0 Median 0.93399 1.3261 NaN 1 0 Median 2808300 1654000 1154300 0 0 0 2808300 1654000 1154300 9896 878 10162 35475 53398 53398 1 RALVFQPVAELK FANTPDSGCVLGMRKRALVFQPVAELKDQT MRKRALVFQPVAELKDQTDFEHRIPKEQWW K R A L K D 2 1 0 0 0 1 1 0 0 0 2 1 0 1 1 0 0 0 0 2 0 0 12 1 1369.8082 A0A024R0Y5;P08237;A0A0S2Z4A1;Q96I60;A0A0S2Z4I1;B4E162;A0A0S2Z4A8;Q7KYX9;Q7Z683 A0A024R0Y5 716 727 PFKM;DKFZp779O048 ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type yes no 2 0.039377 35.944 1 0.49685 0.63862 NaN 1 Median 0.49685 0.63862 NaN 1 0 Median NaN NaN NaN 0 0 Median 5863900 3678700 2185300 5863900 3678700 2185300 0 0 0 9897 44 10163 35476 53399 53399 1 RANPQVGVAFPHIK DDLDMVAIVRYAYDKRANPQVGVAFPHIKH KRANPQVGVAFPHIKHNYECLVYVQLPFME K R A I K H 2 1 1 0 0 1 0 1 1 1 0 1 0 1 2 0 0 0 0 2 0 0 14 1 1532.8576 P13010;Q53T09 P13010 400 413 XRCC5 X-ray repair cross-complementing protein 5 yes no 3;4 1.5067E-05 101.38 5 2 0.51767 0.74574 2.8653 4 Median 0.57238 0.74605 2.0427 2 0 Median 0.46142 0.73404 4.2214 2 0 Median 228080000 145560000 82514000 199850000 126140000 73709000 28232000 19427000 8805400 9898 1262 10164 35477;35478;35479;35480;35481;35482;35483 53400;53401;53402;53403;53404;53405;53406;53407 53404 8 RAPFDLFENK VEGQLEFRALLFIPRRAPFDLFENKKKKNN LFIPRRAPFDLFENKKKKNNIKLYVRRVFI R R A N K K 1 1 1 1 0 0 1 0 0 0 1 1 0 2 1 0 0 0 0 0 0 0 10 1 1235.6299 A0A024RD80;P08238;B4DMA2;B4DGL0;Q58FF7 A0A024RD80 338 347 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 2 0.00024156 126.39 3 0.39951 0.52893 2.5805 2 Median 0.39951 0.52893 2.5805 2 0 Median NaN NaN NaN 0 0 Median 101020000 68621000 32399000 101020000 68621000 32399000 0 0 0 9899 312 10165 35484;35485;35486 53408;53409;53410 53408 3 RAPFDLFENKK VEGQLEFRALLFIPRRAPFDLFENKKKKNN FIPRRAPFDLFENKKKKNNIKLYVRRVFIM R R A K K K 1 1 1 1 0 0 1 0 0 0 1 2 0 2 1 0 0 0 0 0 0 0 11 2 1363.7248 A0A024RD80;P08238;B4DMA2;B4DGL0;Q58FF7 A0A024RD80 338 348 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 3 0.0014111 65.241 1 0.45059 0.54828 NaN 1 Median 0.45059 0.54828 NaN 1 0 Median NaN NaN NaN 0 0 Median 24983000 14865000 10119000 24983000 14865000 10119000 0 0 0 9900 312 10166 35487 53411;53412 53412 2 RAPPPAVAAR APAAPPAVAPPAGPRRAPPPAVAAREPPLP PAGPRRAPPPAVAAREPPLPPPPQPPAPPQ R R A A R E 4 2 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 1 0 0 10 1 1004.5879 Q6SPF0 Q6SPF0 198 207 SAMD1 Atherin yes yes 2 0.0026218 86.833 2 0.44109 0.64167 9.6299 2 Median NaN NaN NaN 0 0 Median 0.44109 0.64167 9.6299 2 0 Median 46387000 30091000 16296000 0 0 0 46387000 30091000 16296000 9901 1599 10167 35488;35489 53413;53414;53415 53413 3 RAPSVANVGSHCDLSLK VTGEGRVKESITRRRRAPSVANVGSHCDLS PSVANVGSHCDLSLKIPEISIQDMTAQVTS R R A L K I 2 1 1 1 1 0 0 1 1 0 2 1 0 0 1 3 0 0 0 2 0 0 17 1 1809.9156 P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5;Q2VP91 P21333 2149 2165 FLNA;FLJ00119 Filamin-A yes no 3 0.00012871 64.275 3 0.98516 1.2879 2.6496 2 Median 0.98516 1.2879 2.6496 2 0 Median NaN NaN NaN 0 0 Median 26458000 13774000 12684000 26458000 13774000 12684000 0 0 0 9902 1287 10168 35490;35491;35492 53416;53417;53418;53419 53419 4 RAQGGDGVLDATGEEANSNAENPK IGFAREGLRAREIEKRAQGGDGVLDATGEE DATGEEANSNAENPKLISAMLCAALYPNVV K R A P K L 4 1 3 2 0 1 3 4 0 0 1 1 0 0 1 1 1 0 0 1 0 0 24 1 2399.0949 Q6P158;Q59G60;Q8N4U2;H7C109 Q6P158 1188 1211 DHX57 Putative ATP-dependent RNA helicase DHX57 yes no 3 3.3348E-16 115.79 4 0.71035 0.95318 11.487 3 Median 0.71035 0.95318 11.487 3 0 Median NaN NaN NaN 0 0 Median 19908000 10809000 9099700 19908000 10809000 9099700 0 0 0 9903 1589 10169 35493;35494;35495;35496 53420;53421;53422;53423;53424;53425;53426 53422 7 RASAILR RKNKYRPDLRMAAIRRASAILRSQKPVMVK DLRMAAIRRASAILRSQKPVMVKRKRTRPT R R A L R S 2 2 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 7 1 785.48717 P46779;O60251 P46779 113 119 RPL28 60S ribosomal protein L28 yes no 2 0.015079 101.41 1 0.68144 0.91924 NaN 1 Median 0.68144 0.91924 NaN 1 0 Median NaN NaN NaN 0 0 Median 87689000 52474000 35216000 87689000 52474000 35216000 0 0 0 9904 1346 10170 35497 53427 53427 1 RASMQPIQIAEGTGITTR TDEEMKTGDPQETLRRASMQPIQIAEGTGI MQPIQIAEGTGITTRQQRKRVSLEPHQGPG R R A T R Q 2 2 0 0 0 2 1 2 0 3 0 0 1 0 1 1 3 0 0 0 0 0 18 1 1929.0102 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q9UNL7;Q4LE64;Q14980 Q4LE64 1953 1970 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 1.9955E-06 58.848 1 0.22519 0.30263 NaN 1 Median NaN NaN NaN 0 0 Median 0.22519 0.30263 NaN 1 0 Median 4983300 4275800 707430 0 0 0 4983300 4275800 707430 9905 148;1499 10171 35498 53428 53428 73 1 RAVLSCIAPSAK AYATLIENDSNPEVRRAVLSCIAPSAKTLP EVRRAVLSCIAPSAKTLPKIVGRTKDVKEA R R A A K T 3 1 0 0 1 0 0 0 0 1 1 1 0 0 1 2 0 0 0 1 0 0 12 1 1271.702 Q9BPX3;Q6NUR1;D6RA93 Q9BPX3 197 208 NCAPG Condensin complex subunit 3 yes no 2 0.0008626 105.4 4 2 0.68102 0.90461 20.189 6 Median 0.69543 0.91147 2.8937 4 0 Median 0.40623 0.62497 0.30684 2 0 Median 69460000 44038000 25422000 50156000 30213000 19944000 19303000 13826000 5477800 9906 1706 10172 35499;35500;35501;35502;35503;35504 53429;53430;53431;53432;53433;53434;53435;53436;53437;53438 53435 10 RAVPLALALISVSNPR RTFGHLLRYGEPTLRRAVPLALALISVSNP AVPLALALISVSNPRLNILDTLSKFSHDAD R R A P R L 3 2 1 0 0 0 0 0 0 1 3 0 0 0 2 2 0 0 0 2 0 0 16 1 1676.0097 Q59EG8;Q13200;B4DM22;Q13041;H7C1H2 Q59EG8 693 708 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 3 0.0038847 72.315 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3026700 3026700 0 3026700 3026700 0 0 0 0 9907 1465 10173 35505;35506 53439;53440;53441 53441 3 RAYDIAGSTK KMQSLDKDIVALMVRRAYDIAGSTKDVKVF ALMVRRAYDIAGSTKDVKVFLNGNKLPVKG R R A T K D 2 1 0 1 0 0 0 1 0 1 0 1 0 0 0 1 1 0 1 0 0 0 10 1 1080.5564 P11388 P11388 242 251 TOP2A DNA topoisomerase 2-alpha yes yes 2 1.719E-16 155.11 4 2 0.84878 1.2759 17.196 6 Median 0.98941 1.3082 15.214 4 0 Linear 0.8515 1.4789 3.1185 2 0 Median 1045700000 554420000 491240000 836640000 439400000 397240000 209020000 115010000 94002000 9908 1256 10174 35507;35508;35509;35510;35511;35512 53442;53443;53444;53445;53446;53447;53448;53449;53450 53447 9 RAYDLAGSCR KMEKLDKDIVALMTRRAYDLAGSCRGVKVM ALMTRRAYDLAGSCRGVKVMFNGKKLPVNG R R A C R G 2 2 0 1 1 0 0 1 0 0 1 0 0 0 0 1 0 0 1 0 0 0 10 1 1167.5455 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 235 244 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.014701 82.831 1 1 0.54681 0.7441 9.316 2 Median 0.57446 0.79477 NaN 1 0 Median 0.52048 0.69666 NaN 1 0 Median 11040000 7035100 4004800 6629700 4234000 2395700 4410200 2801200 1609100 9909 1437 10175 35513;35514 53451;53452;53453 53451 3 RAYFDLQTHVIQVPQGK AEFNSNLNRERMEERRAYFDLQTHVIQVPQ YFDLQTHVIQVPQGKYKVLPTERTKVSSYP R R A G K Y 1 1 0 1 0 3 0 1 1 1 1 1 0 1 1 0 1 0 1 2 0 0 17 1 1999.0639 S5FQ49;S5FZ81;S5FMB0;Q8WUB8;B4DK20 S5FQ49 176 192 PHF10 PHD finger protein 10 yes no 3 0.0024958 29.618 1 0.73927 0.95313 NaN 1 Median 0.73927 0.95313 NaN 1 0 Median NaN NaN NaN 0 0 Median 4877300 2750600 2126600 4877300 2750600 2126600 0 0 0 9910 1664 10176 35515 53454 53454 1 RAYVEIEYEQETEPVAK KHKGKMPLRGPLQRKRAYVEIEYEQETEPV YVEIEYEQETEPVAKAKTT___________ K R A A K A 2 1 0 0 0 1 5 0 0 1 0 1 0 0 1 0 1 0 2 2 0 0 17 1 2053.0004 Q9BXY0 Q9BXY0 280 296 MAK16 Protein MAK16 homolog yes yes 3 3.878E-14 141.6 4 2 0.77876 1.0732 15.764 6 Median 0.80419 1.0628 14.552 4 0 Median 0.72445 1.213 8.9708 2 0 Median 149750000 82601000 67149000 106800000 58335000 48467000 42947000 24266000 18682000 9911 1724 10177 35516;35517;35518;35519;35520;35521 53455;53456;53457;53458;53459;53460;53461;53462;53463;53464;53465;53466;53467;53468 53457 14 RCATPVIIDEILPSK DLEQKEKHHVKMKAKRCATPVIIDEILPSK RCATPVIIDEILPSKKMKVSNNKKKPEEEG K R C S K K 1 1 0 1 1 0 1 0 0 3 1 1 0 0 2 1 1 0 0 1 0 0 15 1 1710.9338 Q643R0;Q9ULW0;B3KM90 Q643R0 144 158 HCTP4;TPX2 Targeting protein for Xklp2 yes no 3 3.4381E-07 123.42 4 0.67638 0.90439 3.342 4 Median 0.67638 0.90439 3.342 4 0 Median NaN NaN NaN 0 0 Median 75149000 41016000 34133000 75149000 41016000 34133000 0 0 0 9912 1581 10178 35522;35523;35524;35525 53469;53470;53471;53472;53473;53474;53475;53476;53477;53478 53471 10 RCAYVYK EGVYARDETEFYLGKRCAYVYKAKNNTVTP ETEFYLGKRCAYVYKAKNNTVTPGGKPNKT K R C Y K A 1 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 2 1 0 0 7 1 958.46947 P18077;F8WBS5;F8WB72;C9K025 P18077 46 52 RPL35A 60S ribosomal protein L35a yes no 2 0.017209 95.9 1 0.72051 0.93905 NaN 1 Median 0.72051 0.93905 NaN 1 0 Median NaN NaN NaN 0 0 Median 26655000 14664000 11991000 26655000 14664000 11991000 0 0 0 9913 1280 10179 35526 53479 53479 1 RCGVQSFYTPR TYTFNTHKAQHTFCKRCGVQSFYTPRSNPG TFCKRCGVQSFYTPRSNPGGFGIAPHCLDE K R C P R S 0 2 0 0 1 1 0 1 0 0 0 0 0 1 1 1 1 0 1 1 0 0 11 1 1369.6561 Q7Z7K6 Q7Z7K6 218 228 CENPV Centromere protein V yes yes 2;3 3.6564E-05 107.34 6 1 1.1672 1.5983 13.4 7 Median 1.1708 1.6113 6.3071 6 0 Median 0.8719 1.1639 NaN 1 0 Median 214540000 99183000 115360000 210480000 97201000 113280000 4066000 1982300 2083700 9914 1619 10180 35527;35528;35529;35530;35531;35532;35533 53480;53481;53482;53483;53484;53485;53486;53487;53488;53489;53490;53491 53487 12 RCLLIDYNPDSQELDFR FPSINVHKVNLNTIKRCLLIDYNPDSQELD LLIDYNPDSQELDFRHYSIKVVPVGASRGM K R C F R H 0 2 1 3 1 1 1 0 0 1 3 0 0 1 1 1 0 0 1 0 0 0 17 1 2153.0212 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;C9J3W3 A0A0A6YYI3 179 195 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 3 5.1504E-07 105.38 5 0.68471 0.9452 11.729 5 Median 0.68471 0.9452 11.729 5 0 Median NaN NaN NaN 0 0 Median 156380000 93588000 62789000 156380000 93588000 62789000 0 0 0 9915 408 10181 35534;35535;35536;35537;35538 53492;53493;53494;53495;53496;53497;53498;53499;53500 53497 9 RCLNSAVGEHEK CTRENQTEINKPKAKRCLNSAVGEHEKVIN KAKRCLNSAVGEHEKVINNQKEKEDFHSYL K R C E K V 1 1 1 0 1 0 2 1 1 0 1 1 0 0 0 1 0 0 0 1 0 0 12 1 1398.6674 Q8IZT6;B3KWI2 Q8IZT6 519 530 ASPM Abnormal spindle-like microcephaly-associated protein yes no 3 0.00098937 48.532 2 0.85521 1.0725 23.873 2 Median 0.85521 1.0725 23.873 2 0 Median NaN NaN NaN 0 0 Median 3747200 2031800 1715400 3747200 2031800 1715400 0 0 0 9916 1631 10182 35539;35540 53501;53502 53502 2 RCLYASVLTAQPR DAIHRGGGQIIPTARRCLYASVLTAQPRLM ARRCLYASVLTAQPRLMEPIYLVEIQCPEQ R R C P R L 2 2 0 0 1 1 0 0 0 0 2 0 0 0 1 1 1 0 1 1 0 0 13 1 1533.8086 P13639;Q8TA90;B4DPU3 P13639 727 739 EEF2 Elongation factor 2 yes no 3 4.8159E-05 59.898 1 0.80061 1.0662 NaN 1 Median 0.80061 1.0662 NaN 1 0 Median NaN NaN NaN 0 0 Median 11461000 8046100 3415100 11461000 8046100 3415100 0 0 0 9917 1264 10183 35541 53503;53504 53503 2 RCNTLITLIER FDWFLKSRTAMELQRRCNTLITLIERENME ELQRRCNTLITLIERENMELEEKEKAEKKK R R C E R E 0 2 1 0 1 0 1 0 0 2 2 0 0 0 0 0 2 0 0 0 0 0 11 1 1387.7606 O60264;B7ZAX9;B4DZC0 O60264 1000 1010 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 3 0.0020433 42.031 2 1.8308 2.3542 NaN 1 Median 1.8308 2.3542 NaN 1 0 Median NaN NaN NaN 0 0 Median 6327400 2229300 4098100 6327400 2229300 4098100 0 0 0 9918 1189 10184 35542;35543 53505;53506 53505 2 RCQLPDGSFR EDLVFTQGSHFMANKRCQLPDGSFRRQRKG FMANKRCQLPDGSFRRQRKGYEEVHVPALK K R C F R R 0 2 0 1 1 1 0 1 0 0 1 0 0 1 1 1 0 0 0 0 0 0 10 1 1234.5877 O75643;A4FU77;Q9H8B9 O75643 427 436 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 0.040567 55.721 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 889400 889400 0 889400 889400 0 0 0 0 9919 1206 10185 35544 53507 53507 1 RDDGTGQLLLPLSDAR TDERLSYTQLLRRCRRDDGTGQLLLPLSDA DDGTGQLLLPLSDARKLTFRGLRKQITMEE R R D A R K 1 2 0 3 0 1 0 2 0 0 4 0 0 0 1 1 1 0 0 0 0 0 16 1 1725.901 Q15149;D3DWL0;Q96IE3 Q15149 4003 4018 PLEC;PLEC1 Plectin yes no 3 0.012911 49.343 3 0.49078 0.64164 NaN 1 Median 0.49078 0.64164 NaN 1 0 Median NaN NaN NaN 0 0 Median 13672000 8750100 4922300 13672000 8750100 4922300 0 0 0 9920 1507 10186 35545;35546;35547 53508;53509;53510 53510 3 RDELLAQHAAGALGLPDLVAVLTR SVWDVLFSSYLSEARRDELLAQHAAGALGL AGALGLPDLVAVLTRVIEETEERLSKVSFR R R D T R V 5 2 0 2 0 1 1 2 1 0 6 0 0 0 1 0 1 0 0 2 0 0 24 1 2498.3969 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 2673 2696 EPPK1 Epiplakin no no 4 0.00011175 39.785 2 0.38625 0.49231 NaN 1 Median 0.38625 0.49231 NaN 1 0 Median NaN NaN NaN 0 0 Median 7475600 5249700 2226000 7475600 5249700 2226000 0 0 0 9921 373;1386 10187 35548;35549 53511;53512;53513 53513 3 RDFNHINVELSLLGK KGRTVIVKGPRGTLRRDFNHINVELSLLGK RDFNHINVELSLLGKKKKRLRVDKWWGNRK R R D G K K 0 1 2 1 0 0 1 1 1 1 3 1 0 1 0 1 0 0 0 1 0 0 15 1 1753.9475 Q53Z07;P32969;H0Y9V9;D6RAN4;E7ESE0;B4E1M5;B4DLV8 Q53Z07 36 50 RPL9 60S ribosomal protein L9 yes no 3 5.1786E-05 91.592 4 1 0.7252 0.94772 31.053 5 Median 0.69751 0.91675 7.2113 4 0 Median 1.0329 1.8257 NaN 1 0 Median 413150000 237370000 175790000 378060000 215460000 162600000 35092000 21909000 13183000 9922 1314 10188 35550;35551;35552;35553;35554 53514;53515;53516;53517;53518;53519;53520;53521;53522;53523 53521 10 RDFNQFIK EKEKLLTQGFTNWNKRDFNQFIKANEKWGR GFTNWNKRDFNQFIKANEKWGRDDIENIAR K R D I K A 0 1 1 1 0 1 0 0 0 1 0 1 0 2 0 0 0 0 0 0 0 0 8 1 1066.556 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370 O60264 848 855 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 2 0.0092741 95.741 4 2.3941 3.1303 6.1359 4 Linear 2.3941 3.1303 6.1359 4 0 Linear NaN NaN NaN 0 0 Median 202340000 63814000 138520000 202340000 63814000 138520000 0 0 0 9923 1189 10189 35555;35556;35557;35558 53524;53525;53526;53527 53526 4 RDHALLEEQSK IINSKWEKVQQLVPKRDHALLEEQSKQQSN LVPKRDHALLEEQSKQQSNEHLRRQFASQA K R D S K Q 1 1 0 1 0 1 2 0 1 0 2 1 0 0 0 1 0 0 0 0 0 0 11 1 1324.6735 A0A0S2Z3G9;O43707;Q96BG6;F5GXS2;H7C144 A0A0S2Z3G9 633 643 ACTN4 Alpha-actinin-4 yes no 2;3 2.9393E-10 160.72 5 0.8455 1.124 6.3209 4 Median 0.8455 1.124 6.3209 4 0 Median NaN NaN NaN 0 0 Median 32787000 15630000 17157000 32787000 15630000 17157000 0 0 0 9924 451 10190 35559;35560;35561;35562;35563 53528;53529;53530;53531;53532;53533 53530 6 RDIVEELSALK TPTSTRRRPKTPLGKRDIVEELSALKQLTQ PLGKRDIVEELSALKQLTQTTHTDKVPGDE K R D L K Q 1 1 0 1 0 0 2 0 0 1 2 1 0 0 0 1 0 0 0 1 0 0 11 1 1271.7085 P46013 P46013 2128 2138 MKI67 Antigen KI-67 yes yes 2 5.5422E-05 105.13 2 2 1.0334 1.3724 24.207 4 Linear 0.84172 1.1201 0.48577 2 0 Median 1.0088 1.7025 2.2488 2 0 Median 90088000 44377000 45711000 30574000 16189000 14386000 59514000 28188000 31325000 9925 1342 10191 35564;35565;35566;35567 53534;53535;53536;53537;53538;53539;53540 53538 7 RDIVLDVSSTSSEDSDEENEELNK HLTFECRNFLRVDPKRDIVLDVSSTSSEDS TSSEDSDEENEELNKLQALQEKRINEEEEK K R D N K L 0 1 2 4 0 0 5 0 0 1 2 1 0 0 0 5 1 0 0 2 0 0 24 1 2709.2101 Q8N9Q2 Q8N9Q2 38 61 SREK1IP1 Protein SREK1IP1 yes yes 3 5.8972E-08 94.087 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3802100 3802100 0 3802100 3802100 0 0 0 0 9926 1644 10192 35568;35569;35570 53541;53542;53543 53541 3 RDLIDNSFNR GLALGAVIASSKKAKRDLIDNSFNRYTFNE SKKAKRDLIDNSFNRYTFNEDEGELPEWFV K R D N R Y 0 2 2 2 0 0 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 10 1 1248.6211 Q8IY81;B4DKU3 Q8IY81 682 691 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 0.012324 68.536 2 0.6487 0.89744 NaN 1 Median 0.6487 0.89744 NaN 1 0 Median NaN NaN NaN 0 0 Median 12714000 9896200 2817900 12714000 9896200 2817900 0 0 0 9927 1628 10193 35571;35572 53544;53545 53545 2 RDNNELLLFILK MRSMRKTFARYLSFRRDNNELLLFILKQLV SFRRDNNELLLFILKQLVAEQVTYQRNRFG R R D L K Q 0 1 2 1 0 0 1 0 0 1 4 1 0 1 0 0 0 0 0 0 0 0 12 1 1486.8508 B4DSV5;B3KXZ4;H0Y8E6;P49736;B7Z8Z6;Q9BWF4 B4DSV5 696 707 MCM2 DNA helicase;DNA replication licensing factor MCM2 yes no 2 0.0049806 52.79 1 0.33117 0.41095 NaN 1 Median 0.33117 0.41095 NaN 1 0 Median NaN NaN NaN 0 0 Median 2489000 1862800 626130 2489000 1862800 626130 0 0 0 9928 790 10194 35573 53546 53546 1 RDNYVPEVSALDQEIIEVDPDTK VRGISIKLQEEERERRDNYVPEVSALDQEI SALDQEIIEVDPDTKEMLKLLVSVCWIPKV R R D T K E 1 1 1 4 0 1 3 0 0 2 1 1 0 0 2 1 1 0 1 3 0 0 23 1 2644.2868 H0YN88;A0A075B716;P08708 H0YN88 81 103 RPS17 40S ribosomal protein S17 yes no 3 9.9665E-18 120.42 4 0.69604 0.9225 10.948 4 Median 0.69604 0.9225 10.948 4 0 Median NaN NaN NaN 0 0 Median 215180000 128270000 86902000 215180000 128270000 86902000 0 0 0 9929 327 10195 35574;35575;35576;35577 53547;53548;53549;53550;53551;53552;53553 53551 7 RDPALNSGVSQKPDPAK STTGAKKRAAPKGTKRDPALNSGVSQKPDP PALNSGVSQKPDPAKTKNRRKRKPSTSDDS K R D A K T 2 1 1 2 0 1 0 1 0 0 1 2 0 0 3 2 0 0 0 1 0 0 17 2 1778.9275 P11388 P11388 1443 1459 TOP2A DNA topoisomerase 2-alpha yes yes 2;3;4 1.5728E-104 235.45 12 5 0.85043 1.1874 14.519 15 Median 0.87559 1.0648 11.427 10 0 Median 0.75869 1.3802 2.4102 5 0 Median 4111600000 2368300000 1743300000 2956800000 1733400000 1223500000 1154800000 634960000 519800000 9930 1256 10196 35578;35579;35580;35581;35582;35583;35584;35585;35586;35587;35588;35589;35590;35591;35592;35593;35594 53554;53555;53556;53557;53558;53559;53560;53561;53562;53563;53564;53565;53566;53567;53568;53569;53570;53571;53572;53573;53574;53575;53576;53577;53578 53574 25 RDPGVITYDLPTPPGEK PPPGEKKPKPEKREKRDPGVITYDLPTPPG PGVITYDLPTPPGEKKDVSGPMPDSYSPRY K R D E K K 0 1 0 2 0 0 1 2 0 1 1 1 0 0 4 0 2 0 1 1 0 0 17 1 1853.9523 A0A024RCN6;P26640;A0A140T936;A0A140T954 A0A024RCN6 273 289 VARS Valine--tRNA ligase yes no 3 0.015006 23.1 1 0.33999 0.44185 NaN 1 Median 0.33999 0.44185 NaN 1 0 Median NaN NaN NaN 0 0 Median 10567000 7370500 3196600 10567000 7370500 3196600 0 0 0 9931 297 10197 35595 53579;53580 53579 2 RDQNYPGAIAIHHPNVAEK AANPAFNLFWAGWDRRDQNYPGAIAIHHPN YPGAIAIHHPNVAEKRISNSTSPTSFVAWG R R D E K R 3 1 2 1 0 1 1 1 2 2 0 1 0 0 2 0 0 0 1 1 0 0 19 1 2129.0766 CON__P15636 CON__P15636 342 360 yes yes 2;3;4 5.3914E-60 210.39 14 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2830600000 2830600000 0 2789800000 2789800000 0 40859000 40859000 0 + 9932 962 10198 35596;35597;35598;35599;35600;35601;35602;35603;35604;35605;35606;35607;35608;35609;35610;35611 53581;53582;53583;53584;53585;53586;53587;53588;53589;53590;53591;53592;53593;53594;53595;53596;53597;53598;53599;53600 53586 20 RDTLALLQK KLKRAKKKQLRSIEKRDTLALLQKQPPQQP LRSIEKRDTLALLQKQPPQQPAAKI_____ K R D Q K Q 1 1 0 1 0 1 0 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 9 1 1056.6291 Q9H6F5 Q9H6F5 342 350 CCDC86 Coiled-coil domain-containing protein 86 yes yes 2 0.00068978 114.89 4 1 0.74459 0.98378 4.5462 5 Median 0.75179 0.9896 2.8189 4 0 Median 0.53597 0.90185 NaN 1 0 Median 564850000 322850000 242000000 481010000 269170000 211840000 83835000 53678000 30157000 9933 1737 10199 35612;35613;35614;35615;35616 53601;53602;53603;53604;53605;53606 53604 6 RDVQEIFR VLDECDKMLEQLDMRRDVQEIFRLTPHEKQ LEQLDMRRDVQEIFRLTPHEKQCMMFSATL R R D F R L 0 2 0 1 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 8 1 1061.5618 A0A024RCM3;Q13838;Q5STU3;F6WLT2;A0A0G2JJZ9;F6S4E6;A0A0A0MT12;F6TRA5;Q59G92;A0A140T9X3;B4DP52;A0A140T996;A0A140T9L4;A0A140T973;A0A140T9K1;A0A140T9X9;B4DIJ6;F6UJC5;A0A140TA18;B4DIZ8;O00148;B4DX78;K7EQN7;A0A024R7H0 O00148 208 215 hCG_2005638;DDX39B;DDX39A;DDX39 Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A no no 2 0.016742 67.897 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11125000 11125000 0 11125000 11125000 0 0 0 0 9934 1164;296 10200 35617 53607 53607 1 RDYLHYIR GVVTKMKMQRTIVIRRDYLHYIRKYNRFEK QRTIVIRRDYLHYIRKYNRFEKRHKNMSVH R R D I R K 0 2 0 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 2 0 0 0 8 1 1134.5934 P62280;M0QZC5;M0R1H5 P62280 90 97 RPS11 40S ribosomal protein S11 yes no 3 0.00069561 104.44 4 0.71581 0.98977 8.5871 4 Median 0.71581 0.98977 8.5871 4 0 Median NaN NaN NaN 0 0 Median 189090000 112120000 76970000 189090000 112120000 76970000 0 0 0 9935 1404 10201 35618;35619;35620;35621 53608;53609;53610;53611;53612;53613;53614;53615 53615 8 READGSETPEPFAAEAK LVTVMLSGIKCPTFRREADGSETPEPFAAE ADGSETPEPFAAEAKFFTESRLLQRDVQII R R E A K F 4 1 0 1 0 0 4 1 0 0 0 1 0 1 2 1 1 0 0 0 0 0 17 1 1803.8275 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B4E299;B3KU67;I6TRR8 A0A140VK49 233 249 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 3 0.045226 26.412 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9936 508 10202 35622 53616 53616 1 REATADDLIK EVVANLQYDDGSGMKREATADDLIKVVEEL GSGMKREATADDLIKVVEELTRIH______ K R E I K V 2 1 0 2 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 10 1 1130.5932 Q16531;B4DSA8;B4DZP5 Q16531 1122 1131 DDB1 DNA damage-binding protein 1 yes no 2 0.0098673 55.549 2 0.77685 1.0042 6.5361 2 Median 0.77685 1.0042 6.5361 2 0 Median NaN NaN NaN 0 0 Median 32822000 17937000 14884000 32822000 17937000 14884000 0 0 0 9937 1520 10203 35623;35624 53617;53618 53618 2 RECPSDECGAGVFMASHFDR KYYKVDENGKISRLRRECPSDECGAGVFMA DECGAGVFMASHFDRHYCGKCCLTYCFNKP R R E D R H 2 2 0 2 2 0 2 2 1 0 0 0 1 2 1 2 0 0 0 1 0 0 20 1 2326.9518 Q5RKT7;B2RDW1;P62979;Q8WYN9 Q5RKT7 119 138 RPS27A;HEL112 Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a yes no 3 0.049721 50.232 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 9938 742 10204 35625 53619 53619 1 REDLVVAPAGITLK KEEEHDCFLEEIMTKREDLVVAPAGITLKE KREDLVVAPAGITLKEANEILQRSKKGKLP K R E L K E 2 1 0 1 0 0 1 1 0 1 2 1 0 0 1 0 1 0 0 2 0 0 14 1 1480.8613 P12268;H0Y4R1;B7Z1G4;Q6QE17;E7ETK5 P12268 182 195 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2;3 6.9207E-14 129.76 7 3 0.331 0.4382 113.4 7 Median 0.33084 0.43592 19.344 6 0 Median 5.0633 8.4124 NaN 1 0 Median 175980000 92917000 83068000 128190000 87938000 40251000 47795000 4978800 42816000 9939 1261 10205 35626;35627;35628;35629;35630;35631;35632;35633;35634;35635 53620;53621;53622;53623;53624;53625;53626;53627;53628;53629;53630;53631;53632;53633;53634 53623 14 REDSAPPSSVAR AVQARRSRSITRKRKREDSAPPSSVARSGS KRKREDSAPPSSVARSGSCSRTPRDVSGLR K R E A R S 2 2 0 1 0 0 1 0 0 0 0 0 0 0 2 3 0 0 0 1 0 0 12 1 1270.6266 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;B4DHR2 Q53GS0 555 566 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.0086842 47.302 1 0.87084 1.2188 NaN 1 Median NaN NaN NaN 0 0 Median 0.87084 1.2188 NaN 1 0 Median 8605700 3552800 5053000 0 0 0 8605700 3552800 5053000 9940 975 10206 35636 53635 53635 1 REDYFGITNLVEHPAQLNPPVDNDTPVTLGVYLTK YIIPNGFDLTEENPKREDYFGITNLVEHPA VDNDTPVTLGVYLTKKEQKKLRRQTRREAQ K R E T K K 1 1 3 3 0 1 2 2 1 1 4 1 0 1 4 0 4 0 2 4 0 0 35 1 3924.9898 B4DLS8;Q53GV6;B2R791;O43395;B4DM28 B4DLS8 394 428 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes no 4 0.0017306 48.467 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2052400 2052400 0 2052400 2052400 0 0 0 0 9941 703 10207 35637 53636 53636 1 REEEEFNTGPLSVLTQSVK LNKPKSEMTPEELQKREEEEFNTGPLSVLT EFNTGPLSVLTQSVKNNTQVLINCRNNKKL K R E V K N 0 1 1 0 0 1 4 1 0 0 2 1 0 1 1 2 2 0 0 2 0 0 19 1 2162.0855 P62316;K7ERG4 P62316 19 37 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 3 2.3891E-07 102.67 4 0.75726 1.0053 7.005 4 Median 0.75726 1.0053 7.005 4 0 Median NaN NaN NaN 0 0 Median 95469000 54529000 40940000 95469000 54529000 40940000 0 0 0 9942 1408 10208 35638;35639;35640;35641 53637;53638;53639;53640;53641;53642;53643;53644;53645 53641 9 REEEEQQEGGFASPR LEALANREREKENSKREEEEQQEGGFASPR REEEEQQEGGFASPRTGKGKWKRKSAGGGP K R E P R T 1 2 0 0 0 2 5 2 0 0 0 0 0 1 1 1 0 0 0 0 0 0 15 1 1747.7762 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9;B4E0F9 A0A087WVR3 640 654 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 3 0.00060574 108.14 2 1 0.73301 0.94539 18.448 2 Median 0.85828 1.0771 NaN 1 0 Median 0.62603 0.82977 NaN 1 0 Median 8163700 4673800 3489900 5040900 2868500 2172300 3122800 1805300 1317500 9943 337 10209 35642;35643;35644 53646;53647;53648;53649 53646 4 REEETLDTIK FAQKVVPDPNVIKLKREEETLDTIKQYYVL VIKLKREEETLDTIKQYYVLCSSRDEKFQA K R E I K Q 0 1 0 1 0 0 3 0 0 1 1 1 0 0 0 0 2 0 0 0 0 0 10 1 1232.6248 I3L0H8;Q9HBZ9;F6QDS0;Q9NUU7;B4DS24;Q2NL95;Q7Z4W5;A0A0U4B4U6;H3BQK0;Q9UMR2;Q53G16;Q68DY7;Q69YM2;I3L352;Q59FQ9;B4DL69;A0A024QZ90 I3L0H8 267 276 DDX19A;DDX19B;DKFZp686C21137;DKFZp762C1313;hCG_1998531 ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 2 0.00806 72.325 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4827100 4827100 0 4827100 4827100 0 0 0 0 9944 1058 10210 35645 53650 53650 1 REEFVSIK FRQHVTTLRETKASRREEFVSIKRQIILCM RETKASRREEFVSIKRQIILCMEELDHTPD R R E I K R 0 1 0 0 0 0 2 0 0 1 0 1 0 1 0 1 0 0 0 1 0 0 8 1 1006.5447 A0A024RC67;O43663;H0YM42;B4E238 A0A024RC67 171 178 PRC1 Protein regulator of cytokinesis 1 yes no 2 0.011997 74.127 1 0.58035 0.7546 NaN 1 Median 0.58035 0.7546 NaN 1 0 Median NaN NaN NaN 0 0 Median 11001000 6333600 4667500 11001000 6333600 4667500 0 0 0 9945 288 10211 35646 53651 53651 1 REFQDAPYNEVTGAPAQFEGTEQAPFLGSR APSQFEERKDPHGEKREFQDAPYNEVTGAP AQFEGTEQAPFLGSRGGAPFQFGGQRRPLL K R E S R G 4 2 1 1 0 3 4 3 0 0 1 0 0 3 3 1 2 0 1 1 0 0 30 1 3311.5483 Q9BTC0 Q9BTC0 1853 1882 DIDO1 Death-inducer obliterator 1 yes yes 3 3.815E-29 138.41 3 1 0.90907 1.3877 26.369 3 Median 0.83692 1.1277 33.218 2 0 Median 0.90907 1.3877 NaN 1 0 Median 38096000 21525000 16570000 20854000 13370000 7483700 17242000 8155200 9086300 9946 1713 10212 35647;35648;35649;35650 53652;53653;53654;53655;53656;53657;53658;53659 53654 8 REGAGDAEADPLEPPPPQQQLGLSLR EFRKTWGFRRTTIAKREGAGDAEADPLEPP LEPPPPQQQLGLSLRRSGRQPKRTERVEQF K R E L R R 3 2 0 2 0 3 3 3 0 0 4 0 0 0 5 1 0 0 0 0 0 0 26 1 2740.378 Q9BTC0 Q9BTC0 37 62 DIDO1 Death-inducer obliterator 1 yes yes 3 1.8384E-05 71.295 3 2 0.63003 0.96035 13.967 5 Median 0.73112 0.98524 16.042 3 0 Plateau 0.63705 0.98971 4.2593 2 0 Median 120190000 71281000 48906000 39801000 23036000 16766000 80385000 48245000 32140000 9947 1713 10213 35651;35652;35653;35654;35655 53660;53661;53662;53663;53664;53665;53666;53667;53668;53669 53663 10 REIEELLAEAK LNYLRDGAVPLPESRREIEELLAEAKYYLV PESRREIEELLAEAKYYLVQGLVEECQAAL R R E A K Y 2 1 0 0 0 0 4 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1299.7034 F5GWA4;A0A024RBJ2;Q9H3F6;F5H6V0;F5H497 F5GWA4 100 110 KCTD10 BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 yes no 2 0.015391 45.997 1 1.1506 1.4355 NaN 1 Median 1.1506 1.4355 NaN 1 0 Median NaN NaN NaN 0 0 Median 2863600 1253700 1609900 2863600 1253700 1609900 0 0 0 9948 275 10214 35656 53670 53670 1 RELEIESQTEEQPTTK ALHTDDPLTWDYVARRELEIESQTEEQPTT ELEIESQTEEQPTTKQAKAVEVGRKEERCC R R E T K Q 0 1 0 0 0 2 5 0 0 1 1 1 0 0 1 1 3 0 0 0 0 0 16 1 1916.9327 B3KQ21;Q9NYH9;B3KX32;B4DSL9 B3KQ21 280 295 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 3 2.3454E-34 163.34 4 2 0.84323 1.1975 9.3356 6 Median 1.0056 1.3193 10.111 4 0 Linear 0.73095 1.1139 6.1127 2 0 Median 61336000 30251000 31085000 43782000 19983000 23799000 17554000 10268000 7286200 9949 768 10215 35657;35658;35659;35660;35661;35662 53671;53672;53673;53674;53675;53676;53677;53678;53679;53680;53681;53682;53683;53684 53674 14 RELHGQNPVVTPCNK GSEASSKKLMDLLPKRELHGQNPVVTPCNK RELHGQNPVVTPCNKQFLSQFEMQSRKTTQ K R E N K Q 0 1 2 0 1 1 1 1 1 0 1 1 0 0 2 0 1 0 0 2 0 0 15 1 1747.8788 F8WJN3;Q16630 F8WJN3 147 161 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 3 0.022063 81.632 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3125200 3125200 0 3125200 3125200 0 0 0 0 9950 1075 10216 35663 53685;53686 53686 2 REPFLLSGGDDGALK VTAHDGDVNVISWSRREPFLLSGGDDGALK REPFLLSGGDDGALKIWDLRQFKSGSPVAT R R E L K I 1 1 0 2 0 0 1 3 0 0 3 1 0 1 1 1 0 0 0 0 0 0 15 1 1573.81 Q8TCJ8;Q8NCK5;B2RDP6;Q9BQ67;B4DTI1 Q8TCJ8 319 333 DKFZp564C172;GRWD1 Glutamate-rich WD repeat-containing protein 1 no no 2;3 5.0141E-07 126.56 6 2 0.54884 0.75301 9.5496 8 Median 0.58807 0.78065 9.3581 6 0 Median 0.45512 0.70654 9.92 2 0 Median 72542000 45327000 27216000 51152000 31573000 19579000 21390000 13754000 7637000 9951 739;858 10217 35664;35665;35666;35667;35668;35669;35670;35671 53687;53688;53689;53690;53691;53692;53693;53694;53695;53696;53697;53698;53699 53693 13 REPLPSRR APVSRGRDSYGGPPRREPLPSRRDVYLSPR SYGGPPRREPLPSRRDVYLSPRDDGYSTKD R R E R R D 0 3 0 0 0 0 1 0 0 0 1 0 0 0 2 1 0 0 0 0 0 0 8 2 1009.5781 H0Y6E7;H3BT71;P38159;B4E352;B3KRG5;H3BUY5;Q2VIN3;Q96E39 H0Y6E7 198 205 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 3 0.026272 44.753 1 0.88471 1.1181 NaN 1 Median 0.88471 1.1181 NaN 1 0 Median NaN NaN NaN 0 0 Median 16319000 8069700 8249300 16319000 8069700 8249300 0 0 0 9952 1091;1531 10218 35672 53700 53700 1 REPLSLINVR GARPGPGVWDPNWDRREPLSLINVRKRNVE PNWDRREPLSLINVRKRNVESGEEELASKL R R E V R K 0 2 1 0 0 0 1 0 0 1 2 0 0 0 1 1 0 0 0 1 0 0 10 1 1195.7037 Q96HS1 Q96HS1 65 74 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 3 0.00014225 75.566 5 1 0.59766 0.80778 28.131 4 Median 0.6183 0.83044 6.403 3 0 Plateau 1.0327 1.3583 NaN 1 0 Median 23717000 15310000 8406500 21544000 14311000 7233000 2172200 998790 1173400 9953 1688 10219 35673;35674;35675;35676;35677;35678 53701;53702;53703;53704;53705;53706;53707 53706 7 REPTVSSFYVK WNNAFTLLSAVSLPRREPTVSSFYVKRAEL SLPRREPTVSSFYVKRAELWDTWKVAHLKE R R E V K R 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 2 1 0 1 2 0 0 11 1 1311.6823 Q9BVI4;F5H303 Q9BVI4 222 232 NOC4L Nucleolar complex protein 4 homolog yes no 2 0.023189 42.19 1 0.88406 1.3759 NaN 1 Median NaN NaN NaN 0 0 Median 0.88406 1.3759 NaN 1 0 Median 7631700 3457100 4174600 0 0 0 7631700 3457100 4174600 9954 1718 10220 35679 53708;53709 53709 2 REPVPFPSGSAGPGPR GGCGGGGSGGGGAPRREPVPFPSGSAGPGP EPVPFPSGSAGPGPRGPRATESGKRMDCPA R R E P R G 1 2 0 0 0 0 1 3 0 0 0 0 0 1 5 2 0 0 0 1 0 0 16 1 1606.8216 Q9UBB5;X6RBL6;A0A024R2B8 Q9UBB5 124 139 MBD2 Methyl-CpG-binding domain protein 2 yes no 3 0.00014881 91.592 4 2 0.69098 0.94255 28.018 6 Median 0.63408 0.85195 12.312 4 0 Median 0.95691 1.4131 2.4238 2 0 Median 102110000 60099000 42011000 76603000 47258000 29345000 25507000 12841000 12666000 9955 1781 10221 35680;35681;35682;35683;35684;35685 53710;53711;53712;53713;53714;53715;53716;53717;53718;53719;53720 53710 11 REQEVNILK DTLDSTAAQQELRSKREQEVNILKKTLEEE QELRSKREQEVNILKKTLEEEAKTHEAQIQ K R E L K K 0 1 1 0 0 1 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 9 1 1127.6299 A0A024R1N1;P35579;Q86XU5;A0A0U4BW16 A0A024R1N1 1165 1173 MYH9 Myosin-9 no no 2 0.0013457 104.2 2 1 0.92512 1.2208 104.68 3 Median 0.90779 1.2016 2.2403 2 0 Median 4.869 7.3637 NaN 1 0 Median 126760000 65554000 61208000 121250000 64550000 56697000 5515600 1004400 4511200 9956 61;490 10222 35686;35687;35688 53721;53722;53723;53724;53725 53724 5 REQEVNILKK DTLDSTAAQQELRSKREQEVNILKKTLEEE ELRSKREQEVNILKKTLEEEAKTHEAQIQE K R E K K T 0 1 1 0 0 1 2 0 0 1 1 2 0 0 0 0 0 0 0 1 0 0 10 2 1255.7248 A0A024R1N1;P35579;Q86XU5;A0A0U4BW16 A0A024R1N1 1165 1174 MYH9 Myosin-9 no no 3 0.01672 65.241 2 1.071 1.3065 6.331 2 Median 1.071 1.3065 6.331 2 0 Median NaN NaN NaN 0 0 Median 17675000 8684700 8990400 17675000 8684700 8990400 0 0 0 9957 61;490 10223 35689;35690 53726;53727;53728 53727 3 RESVELALK NQGNLKGDGLCCYLKRESVELALKLLDEDE LCCYLKRESVELALKLLDEDEIRGYKLHVE K R E L K L 1 1 0 0 0 0 2 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 9 1 1043.5975 O43719;B4DRS4;Q5H919;Q5H918 O43719 191 199 HTATSF1 HIV Tat-specific factor 1 yes no 2 0.025058 51.854 1 0.51133 0.66473 NaN 1 Median 0.51133 0.66473 NaN 1 0 Median NaN NaN NaN 0 0 Median 10687000 6386900 4300500 10687000 6386900 4300500 0 0 0 9958 1187 10224 35691 53729 53729 1 RESVLTATSILNNPIVK PDHIKGKQAYKEQIKRESVLTATSILNNPI SVLTATSILNNPIVKARYERFVKGENPFEI K R E V K A 1 1 2 0 0 0 1 0 0 2 2 1 0 0 1 2 2 0 0 2 0 0 17 1 1854.0575 Q5BKZ1;A0A0A0MRN4 Q5BKZ1 443 459 ZNF326 DBIRD complex subunit ZNF326 yes no 3 0.00084466 72.489 4 1 0.59192 0.79946 74.129 3 Median 0.47201 0.63607 32.333 2 0 Median 1.4299 2.1574 NaN 1 0 Median 22276000 14960000 7316700 14879000 11476000 3403000 7397400 3483700 3913700 9959 1555 10225 35692;35693;35694;35695;35696 53730;53731;53732;53733;53734 53731 5 RETFVQAVSK ______________________________ ______________________________ K R E S K E 1 1 0 0 0 1 1 0 0 0 0 1 0 1 0 1 1 0 0 2 0 0 10 1 1163.6299 Q86XI2;B3KRQ2;F8WE06 Q86XI2 4 13 NCAPG2 Condensin-2 complex subunit G2 yes no 2 0.026204 71.614 2 0.74617 0.98485 10.204 2 Median 0.74617 0.98485 10.204 2 0 Median NaN NaN NaN 0 0 Median 32437000 18812000 13625000 32437000 18812000 13625000 0 0 0 9960 1621 10226 35697;35698 53735;53736 53736 2 RETGVDLTK DFDQALLRHIVKEFKRETGVDLTKDNMALQ IVKEFKRETGVDLTKDNMALQRVREAAEKA K R E T K D 0 1 0 1 0 0 1 1 0 0 1 1 0 0 0 0 2 0 0 1 0 0 9 1 1017.5455 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;B7Z4T3;Q2F839 B7Z4V2 278 286 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 0.015322 64.04 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7406000 0 7406000 0 0 0 7406000 0 7406000 9961 910 10227 35699 53737 53737 1 REVDDLGPEVGDIK LTGQEEIDEACKRIKREVDDLGPEVGDIKI KREVDDLGPEVGDIKIIPLYSTLPPQQQQR K R E I K I 0 1 0 3 0 0 2 2 0 1 1 1 0 0 1 0 0 0 0 2 0 0 14 1 1540.7733 O43143;B4E0S6 O43143 371 384 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2;3 0.00010551 104.94 5 2 0.64869 0.85819 25.59 6 Median 0.61747 0.83845 10.365 5 0 Median 0.9897 1.4908 NaN 1 0 Median 51711000 25836000 25875000 44720000 23718000 21002000 6991000 2117900 4873100 9962 1180 10228 35700;35701;35702;35703;35704;35705;35706 53738;53739;53740;53741;53742;53743;53744;53745;53746;53747 53740 10 REYYIQLESGQVPVYAVTFQEPENDPR FSDGYLALWNMKSMKREYYIQLESGQVPVY PVYAVTFQEPENDPRNCCYLWAVQSTQDSE K R E P R N 1 2 1 1 0 3 4 1 0 1 1 0 0 1 3 1 1 0 3 3 0 0 27 1 3226.5571 Q8WYP5 Q8WYP5 254 280 AHCTF1 Protein ELYS yes yes 3 0.0068443 34.78 2 0.6896 0.9474 68.144 2 Median 0.6896 0.9474 68.144 2 0 Median NaN NaN NaN 0 0 Median 5893300 3156200 2737200 5893300 3156200 2737200 0 0 0 9963 1670 10229 35707;35708 53748;53749 53749 2 RFADFTVYR KRKLEMEDYPSFMAKRFADFTVYRNRTLQK PSFMAKRFADFTVYRNRTLQKWHDKTKLAS K R F Y R N 1 2 0 1 0 0 0 0 0 0 0 0 0 2 0 0 1 0 1 1 0 0 9 1 1173.5931 Q9NY61 Q9NY61 355 363 AATF Protein AATF yes yes 2 0.016996 86.136 2 0.80016 1.1067 3.3372 2 Median 0.80016 1.1067 3.3372 2 0 Median NaN NaN NaN 0 0 Median 25863000 14875000 10989000 25863000 14875000 10989000 0 0 0 9964 1767 10230 35709;35710 53750;53751 53751 2 RFALEQQR GEYNSNMSPEEKMMKRFALEQQRHHEKKSI PEEKMMKRFALEQQRHHEKKSIYNLNEDEE K R F Q R H 1 2 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 8 1 1046.5621 A8KA74;P78316;E9PFK5 A8KA74 104 111 NOP14 Nucleolar protein 14 yes no 2 0.0075257 84.615 2 1.002 1.3477 8.0269 2 Median 1.002 1.3477 8.0269 2 0 Median NaN NaN NaN 0 0 Median 58140000 29390000 28750000 58140000 29390000 28750000 0 0 0 9965 652 10231 35711;35712 53752;53753;53754;53755 53755 4 RFCNTTCLGAYK GSPGPELLFHEGQQKRFCNTTCLGAYKKKN QQKRFCNTTCLGAYKKKNTRVYPCVWCKTL K R F Y K K 1 1 1 0 2 0 0 1 0 0 1 1 0 1 0 0 2 0 1 0 0 0 12 1 1489.6806 A6NHN7;A6NHB5;Q14202;A8K3Z7;A6NL54 A6NHN7 480 491 ZMYM3 Zinc finger MYM-type protein 3 yes no 2 0.0053985 87.298 1 0.55517 0.74201 NaN 1 Median 0.55517 0.74201 NaN 1 0 Median NaN NaN NaN 0 0 Median 2452700 1543100 909630 2452700 1543100 909630 0 0 0 9966 565 10232 35713 53756;53757 53756 2 RFDDAVVQSDMK NPTNTVFDAKRLIGRRFDDAVVQSDMKHWP IGRRFDDAVVQSDMKHWPFMVVNDAGRPKV R R F M K H 1 1 0 3 0 1 0 0 0 0 0 1 1 1 0 1 0 0 0 2 0 0 12 1 1409.6609 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;Q53HF2;E9PN89;E9PNE6;B4DTX2;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;A4D111 V9HW22 77 88 HEL-S-72p;HSPA8;LOC401308 Heat shock cognate 71 kDa protein yes no 2 2.1702E-05 137.4 2 2 0.9846 1.4352 51.532 4 Median 0.64369 0.84356 39.782 2 0 Median 1.2043 1.8748 2.4238 2 0 Median 31418000 15558000 15861000 10117000 5796800 4320100 21301000 9760700 11541000 9967 1253 10233;10234 35714;35715;35716;35717 53758;53759;53760;53761;53762 53759 493 5 RFDDPGLMLMGFKPLVLLK SRQIILEKEETEELKRFDDPGLMLMGFKPL PGLMLMGFKPLVLLKKHHYLRPSLFVYPEE K R F L K K 0 1 0 2 0 0 0 2 0 0 5 2 2 2 2 0 0 0 0 1 0 0 19 2 2189.2105 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356 A0A024R1N4 339 357 XRCC6 X-ray repair cross-complementing protein 6 yes no 3 0.00027137 40.432 1 0.32897 0.58488 NaN 1 Median NaN NaN NaN 0 0 Median 0.32897 0.58488 NaN 1 0 Median 25871000 18517000 7354600 0 0 0 25871000 18517000 7354600 9968 62 10235 35718 53763 53763 37;38 1 RFDTEEEFK PPIGDLQVFYKESKKRFDTEEEFKKRAYQC YKESKKRFDTEEEFKKRAYQCVVLLQGKNP K R F F K K 0 1 0 1 0 0 3 0 0 0 0 1 0 2 0 0 1 0 0 0 0 0 9 1 1199.5459 P54136;B4DXW6 P54136 279 287 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 0.043303 54.416 1 0.43785 0.5675 NaN 1 Median 0.43785 0.5675 NaN 1 0 Median NaN NaN NaN 0 0 Median 9772500 6397200 3375300 9772500 6397200 3375300 0 0 0 9969 1373 10236 35719 53764 53764 0 RFDVLAPHLTK RQGYPDHMVFSEFRRRFDVLAPHLTKKHGR EFRRRFDVLAPHLTKKHGRNYIVVDERRAV R R F T K K 1 1 0 1 0 0 0 0 1 0 2 1 0 1 1 0 1 0 0 1 0 0 11 1 1295.735 A0A0D9SFK2;A0A024QZ63;Q92614;B4DYM1;B4E0T8;B4DZ32 A0A0D9SFK2 1123 1133 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 3 0.0022175 49.423 2 0.38397 0.49946 NaN 1 Median 0.38397 0.49946 NaN 1 0 Median NaN NaN NaN 0 0 Median 13558000 9632100 3925800 13558000 9632100 3925800 0 0 0 9970 6 10237 35720;35721 53765;53766 53765 2 RFEIINAIYEPTEEECEWKPDEEDEISEELK LERKYAVLYQPLFDKRFEIINAIYEPTEEE EWKPDEEDEISEELKEKAKIEDEKKDEEKE K R F L K E 1 1 1 2 1 0 11 0 0 4 1 2 0 1 2 1 1 1 1 0 0 0 31 2 3868.7513 F8W118;F8VY35;F8VV59;A0A024RBE6;F5H4R6;H0YIV4;A0A024RBB7;P55209;F8VRJ2;H0YH88;F8W543 F8W118 76 106 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 4 0.019021 14.374 1 0.27255 0.47177 NaN 1 Median NaN NaN NaN 0 0 Median 0.27255 0.47177 NaN 1 0 Median 16150000 12842000 3308400 0 0 0 16150000 12842000 3308400 9971 267 10238 35722 53767 53767 1 RFGDDLNHISCVIK KWTETEIEMLRAAVKRFGDDLNHISCVIKE KRFGDDLNHISCVIKERTVAQIKATVKRKV K R F I K E 0 1 1 2 1 0 0 1 1 2 1 1 0 1 0 1 0 0 0 1 0 0 14 1 1672.8355 F8W038;Q8IXM2;F8W1H0;H0YIS7 F8W038 56 69 C17orf49;BAP18;RNASEK-C17orf49 Chromatin complexes subunit BAP18 yes no 3 0.0077073 28.986 2 1.2531 1.6004 14.545 2 Median 1.2531 1.6004 14.545 2 0 Median NaN NaN NaN 0 0 Median 10539000 4657700 5881400 10539000 4657700 5881400 0 0 0 9972 1065 10239 35723;35724 53768;53769 53769 2 RFGFPEGSVELYAEK EKGRRIRELTAVVQKRFGFPEGSVELYAEK RFGFPEGSVELYAEKVATRGLCAIAQAESL K R F E K V 1 1 0 0 0 0 3 2 0 0 1 1 0 2 1 1 0 0 1 1 0 0 15 1 1727.8519 P23396;E9PPU1;F2Z2S8;H0YCJ7;H0YF32;A7E2S3 P23396 76 90 RPS3 40S ribosomal protein S3 yes no 2;3 1.0402E-21 169.37 8 2 0.73019 0.95983 41.909 10 Median 0.72266 0.95517 8.9692 8 0 Median 1.59 2.501 2.0324 2 0 Median 388940000 213550000 175390000 364340000 203530000 160810000 24593000 10018000 14576000 9973 1293 10240 35725;35726;35727;35728;35729;35730;35731;35732;35733;35734 53770;53771;53772;53773;53774;53775;53776;53777;53778;53779;53780;53781;53782;53783;53784;53785;53786;53787;53788;53789;53790 53776 21 RFGGPVHHQAQR KNVALLSQLYHSPARRFGGPVHHQAQRFRF PARRFGGPVHHQAQRFRFSPMGVDHMSGLS R R F Q R F 1 2 0 0 0 2 0 2 2 0 0 0 0 1 1 0 0 0 0 1 0 0 12 1 1388.7174 Q15717 Q15717 206 217 ELAVL1 ELAV-like protein 1 yes yes 3 0.05077 45.764 1 0.54047 0.69997 NaN 1 Median 0.54047 0.69997 NaN 1 0 Median NaN NaN NaN 0 0 Median 421070 271230 149830 421070 271230 149830 0 0 0 9974 1515 10241 35735 53791 53791 1 RFGSEFSPELQASFQK NFRLLGNVLVVVLARRFGSEFSPELQASFQ FGSEFSPELQASFQKVVTGVANALAHRYH_ R R F Q K V 1 1 0 0 0 2 2 1 0 0 1 1 0 3 1 3 0 0 0 0 0 0 16 1 1856.9057 CON__Q3SX09 CON__Q3SX09 172 187 yes yes 2;3 1.0432E-08 125.61 5 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 132170000 132170000 0 94568000 94568000 0 37603000 37603000 0 + 9975 969 10242 35736;35737;35738;35739;35740;35741;35742 53792;53793;53794;53795;53796;53797;53798 53795 7 RFGVPIIADGGIQTVGHVVK RPQGTAVYKVAEYARRFGVPIIADGGIQTV IIADGGIQTVGHVVKALALGASTVMMGSLL R R F V K A 1 1 0 1 0 1 0 4 1 3 0 1 0 1 1 0 1 0 0 4 0 0 20 1 2062.1687 B4DNJ7;B3KRZ3;Q6ZNB1;Q5H9Q6;P20839;A0A024R725;C9J381 B4DNJ7 356 375 IMPDH;DKFZp781N0678;IMPDH1 Inosine-5-monophosphate dehydrogenase;Inosine-5-monophosphate dehydrogenase 1 yes no 3 3.4307E-05 48.824 1 0.44021 0.55684 NaN 1 Median 0.44021 0.55684 NaN 1 0 Median NaN NaN NaN 0 0 Median 7107900 5138800 1969100 7107900 5138800 1969100 0 0 0 9976 772 10243 35743 53799 53799 1 RFGVPVIADGGIQNVGHIAK RPQATAVYKVSEYARRFGVPVIADGGIQNV VIADGGIQNVGHIAKALALGASTVMMGSLL R R F A K A 2 1 1 1 0 1 0 4 1 3 0 1 0 1 1 0 0 0 0 3 0 0 20 1 2047.1327 P12268;H0Y4R1 P12268 356 375 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 3;4 3.3684E-24 117.27 4 2 1.1494 1.6928 156.38 4 Median 0.34054 0.45125 2.8207 2 0 Median 4.1624 6.7543 11.542 2 0 Median 114330000 68958000 45376000 81448000 62895000 18554000 32886000 6063800 26822000 9977 1261 10244 35744;35745;35746;35747;35748;35749 53800;53801;53802;53803;53804;53805;53806 53802 6 RFHPSLR GLDFGQEGFTRFRERRFHPSLRSTRRFYPH GFTRFRERRFHPSLRSTRRFYPHTHNMDGF R R F L R S 0 2 0 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 0 0 0 0 7 1 911.50897 P46087 P46087 558 564 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2;3 0.0030758 104.45 5 0.65209 0.878 12.663 3 Median 0.65209 0.878 12.663 3 0 Median NaN NaN NaN 0 0 Median 117560000 77394000 40166000 117560000 77394000 40166000 0 0 0 9978 1343 10245 35750;35751;35752;35753;35754 53807;53808;53809;53810;53811;53812;53813 53810 7 RFIEDEDYDPPIK PVVSAISSRIIKTPRRFIEDEDYDPPIKIA PRRFIEDEDYDPPIKIARLESTPNSRFSAP R R F I K I 0 1 0 3 0 0 2 0 0 2 0 1 0 1 2 0 0 0 1 0 0 0 13 1 1635.7781 Q03164;E9PR05;Q9UPD0;Q9Y6P1 Q03164 427 439 KMT2A;MLL Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 0.0024721 91.858 2 0.95503 1.2727 4.1949 2 Median 0.95503 1.2727 4.1949 2 0 Median NaN NaN NaN 0 0 Median 6944300 3113400 3830900 6944300 3113400 3830900 0 0 0 9979 1438 10246 35755;35756 53814;53815 53814 2 RFNIPPSTLSTILK EVEENPDLRKGEIARRFNIPPSTLSTILKN RRFNIPPSTLSTILKNKRAILASERKYGVA R R F L K N 0 1 1 0 0 0 0 0 0 2 2 1 0 1 2 2 2 0 0 0 0 0 14 1 1585.9192 P07199;Q71VN4 P07199 34 47 CENPB Major centromere autoantigen B yes no 3 0.0045492 24.191 1 0.90791 1.1471 NaN 1 Median 0.90791 1.1471 NaN 1 0 Median NaN NaN NaN 0 0 Median 6268400 3429000 2839400 6268400 3429000 2839400 0 0 0 9980 1239 10247 35757 53816 53816 1 RFNVAVTR QLDLDFNLGFLKNPKRFNVAVTRAKALLII GFLKNPKRFNVAVTRAKALLIIVGNPLLLG K R F T R A 1 2 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 2 0 0 8 1 961.54575 B7Z700;Q5JR04;Q9HCE1;B3KQ43 B7Z700 842 849 MOV10 Putative helicase MOV-10 yes no 2 0.040825 49.442 1 0.91182 1.2125 NaN 1 Median 0.91182 1.2125 NaN 1 0 Median NaN NaN NaN 0 0 Median 9594700 5657600 3937100 9594700 5657600 3937100 0 0 0 9981 916 10248 35758 53817 53817 1 RFPELESLVPNALDYIR ELNIIHKFIRDKYSKRFPELESLVPNALDY PELESLVPNALDYIRTVKELGNSLDKCKNN K R F I R T 1 2 1 1 0 0 2 0 0 1 3 0 0 1 2 1 0 0 1 1 0 0 17 1 2031.0789 E7EU94;E7ESX0;E7EN72;B4DWW8;E7EVX8;Q8WWY3 E7EU94 121 137 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 3 0.00084466 72.489 3 0.54227 0.75428 21.808 3 Median 0.54227 0.75428 21.808 3 0 Median NaN NaN NaN 0 0 Median 9566800 5898800 3668000 9566800 5898800 3668000 0 0 0 9982 866 10249 35759;35760;35761 53818;53819;53820 53819 3 RFPGYDSESK KGAVDGGLSIPHSTKRFPGYDSESKEFNAE PHSTKRFPGYDSESKEFNAEVHRKHIMGQN K R F S K E 0 1 0 1 0 0 1 1 0 0 0 1 0 1 1 2 0 0 1 0 0 0 10 1 1184.5462 A2RUM7;P46777;B3KTM6;Q59GX9 A2RUM7 179 188 RPL5 60S ribosomal protein L5 yes no 2 1.234E-45 213.85 4 2 0.72359 0.98054 5.1786 6 Median 0.72859 0.96466 1.5979 4 0 Median 0.60962 1.0608 4.1795 2 0 Median 2018900000 1179100000 839750000 1815300000 1052600000 762700000 203590000 126550000 77045000 9983 540 10250 35762;35763;35764;35765;35766;35767 53821;53822;53823;53824;53825;53826;53827;53828;53829;53830 53826 10 RFPVAPLIPYPLITK HPRKKKKEKKEDIFRRFPVAPLIPYPLITK RFPVAPLIPYPLITKEDINAIEMEEDKRDL R R F T K E 1 1 0 0 0 0 0 0 0 2 2 1 0 1 4 0 1 0 1 1 0 0 15 1 1724.0389 P49756;H0YE46 P49756 247 261 RBM25 RNA-binding protein 25 yes no 3 0.0078904 56.599 2 2 0.57736 0.7708 62.366 3 Median 0.54942 0.72061 9.5219 2 0 Median 1.482 2.1091 NaN 1 0 Median 12114000 6453900 5660000 7404600 5051500 2353100 4709200 1402400 3306800 9984 1355 10251 35768;35769;35770;35771 53831;53832;53833;53834;53835;53836;53837;53838 53836 8 RFQDGAIR AAKFRQFWGSRSELRRFQDGAIREAVVWEA GSRSELRRFQDGAIREAVVWEAASMSQKRL R R F I R E 1 2 0 1 0 1 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 8 1 961.50936 Q9H6R4;A0A0A0MRW6;B4DF80;B3KPN5 Q9H6R4 591 598 NOL6 Nucleolar protein 6 yes no 2 0.048373 46.129 1 0.71696 0.99184 NaN 1 Median NaN NaN NaN 0 0 Median 0.71696 0.99184 NaN 1 0 Median 7692900 4672300 3020600 0 0 0 7692900 4672300 3020600 9985 1738 10252 35772 53839 53839 1 RFQFLQK GYRSRSAFKLIQLNRRFQFLQKARALLDLC FKLIQLNRRFQFLQKARALLDLCAAPGGWL R R F Q K A 0 1 0 0 0 2 0 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 7 1 965.54469 Q8IY81;J3KS36;J3KS74;J3QSE2 Q8IY81 38 44 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 0.049199 54.525 1 0.62587 0.96755 NaN 1 Median NaN NaN NaN 0 0 Median 0.62587 0.96755 NaN 1 0 Median 5563000 3183900 2379100 0 0 0 5563000 3183900 2379100 9986 1628 10253 35773 53840 53840 1 RFQLPLDK SPSVPGPTKPKPKTKRFQLPLDKGNGKKHK KPKPKTKRFQLPLDKGNGKKHKVSHLRTSS K R F D K G 0 1 0 1 0 1 0 0 0 0 2 1 0 1 1 0 0 0 0 0 0 0 8 1 1015.5815 Q03164;B4E012 Q03164 3542 3549 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 0.050759 45.081 1 1.0083 1.5462 NaN 1 Median NaN NaN NaN 0 0 Median 1.0083 1.5462 NaN 1 0 Median 9708500 4600100 5108400 0 0 0 9708500 4600100 5108400 9987 1438 10254 35774 53841 53841 1 RFQQAVDAVEEFLR YHAHKEEMIKINKGKRFQQAVDAVEEFLRR KRFQQAVDAVEEFLRRAKGKDQTSSHNSSD K R F L R R 2 2 0 1 0 2 2 0 0 0 1 0 0 2 0 0 0 0 0 2 0 0 14 1 1706.874 K7EMM8;D3DUE6;K7EQB2;Q49A26;D3DUE7 Q49A26 66 79 GLYR1;N-PAC Putative oxidoreductase GLYR1 no no 3 6.3496E-15 116.87 4 2 0.82885 1.1417 10.89 5 Median 0.834 1.1417 1.5561 3 0 Median 0.71777 1.0931 21.256 2 0 Median 103470000 58426000 45048000 53519000 29014000 24504000 49955000 29412000 20544000 9988 982;1533;1151 10255 35775;35776;35777;35778;35779;35780 53842;53843;53844;53845;53846;53847;53848;53849;53850;53851;53852;53853;53854 53847 13 RFQQAVDAVEEFLRR YHAHKEEMIKINKGKRFQQAVDAVEEFLRR RFQQAVDAVEEFLRRAKGKDQTSSHNSSDD K R F R R A 2 3 0 1 0 2 2 0 0 0 1 0 0 2 0 0 0 0 0 2 0 0 15 2 1862.9751 K7EMM8;D3DUE6;K7EQB2;Q49A26;D3DUE7 Q49A26 66 80 GLYR1;N-PAC Putative oxidoreductase GLYR1 no no 4 0.018246 23.831 1 1.1073 1.3995 NaN 1 Median 1.1073 1.3995 NaN 1 0 Median NaN NaN NaN 0 0 Median 1585400 690170 895260 1585400 690170 895260 0 0 0 9989 982;1533;1151 10256 35781 53855 53855 1 RFSCIIGPNGSGK FKSYAGEKILGPFHKRFSCIIGPNGSGKSN HKRFSCIIGPNGSGKSNVIDSMLFVFGYRA K R F G K S 0 1 1 0 1 0 0 3 0 2 0 1 0 1 1 2 0 0 0 0 0 0 13 1 1391.698 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9JWF0;C9IYK2;C9JJ64 Q9NTJ3 107 119 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.00055677 101.35 2 0.73557 0.98689 NaN 1 Median 0.73557 0.98689 NaN 1 0 Median NaN NaN NaN 0 0 Median 3498500 2201100 1297300 3498500 2201100 1297300 0 0 0 9990 1760 10257 35782;35783 53856;53857 53857 2 RFSFCCSPEPEAEAEAAAGPGPCER KAYLLGKEDAAREIRRFSFCCSPEPEAEAE EAEAEAAAGPGPCERLLSRVAALFPALRPG R R F E R L 5 2 0 0 3 0 5 2 0 0 0 0 0 2 4 2 0 0 0 0 0 0 25 1 2781.1581 Q13501;E7EMC7;E3WH17;E3W990;B4DE82;D6RBF1;C9J6J8 Q13501 22 46 SQSTM1;SQSTM1-ALK Sequestosome-1;Tyrosine-protein kinase receptor yes no 3 0.012281 18.101 1 0.59722 0.74829 NaN 1 Median 0.59722 0.74829 NaN 1 0 Median NaN NaN NaN 0 0 Median 4605200 3079500 1525700 4605200 3079500 1525700 0 0 0 9991 1471 10258 35784 53858;53859 53858 2 RFSPIPFPPLSYK AVAVYTTTVHWLESRRFSPIPFPPLSYKHD SRRFSPIPFPPLSYKHDTKLLILALERLKE R R F Y K H 0 1 0 0 0 0 0 0 0 1 1 1 0 2 4 2 0 0 1 0 0 0 13 1 1547.85 Q6P2Q9;I3L0J9 Q6P2Q9 821 833 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2;3 0.011411 72.652 3 0.48736 0.63175 13.834 3 Median 0.48736 0.63175 13.834 3 0 Median NaN NaN NaN 0 0 Median 12502000 7584200 4918200 12502000 7584200 4918200 0 0 0 9992 1592 10259 35785;35786;35787 53860;53861;53862;53863 53863 4 RFSQMLQDK GKPKSGRVWKDRSKKRFSQMLQDKPLRTSW KDRSKKRFSQMLQDKPLRTSWQRKMKERQE K R F D K P 0 1 0 1 0 2 0 0 0 0 1 1 1 1 0 1 0 0 0 0 0 0 9 1 1151.5757 Q9H6F5 Q9H6F5 253 261 CCDC86 Coiled-coil domain-containing protein 86 yes yes 2 0.030074 64.711 2 0.50658 0.83054 1.1262 2 Median NaN NaN NaN 0 0 Median 0.50658 0.83054 1.1262 2 0 Median 36413000 24580000 11834000 0 0 0 36413000 24580000 11834000 9993 1737 10260 35788;35789 53864;53865 53864 2 RFTAQGLPDLNHSQVYAVK GHEVEDVIIKCQLPKRFTAQGLPDLNHSQV QGLPDLNHSQVYAVKTVLQRPLSLIQGPPG K R F V K T 2 1 1 1 0 2 0 1 1 0 2 1 0 1 1 1 1 0 1 2 0 0 19 1 2143.1174 A0A024R7L5;A0A024R7L8;Q92900;A0A059XBJ1;A0A059XAL2;A0A059XAJ5 A0A024R7L5 462 480 UPF1 Regulator of nonsense transcripts 1 yes no 3 0.0089268 24.594 1 0.24614 0.31765 NaN 1 Median 0.24614 0.31765 NaN 1 0 Median NaN NaN NaN 0 0 Median 8301800 5733300 2568500 8301800 5733300 2568500 0 0 0 9994 180 10261 35790 53866 53866 1 RFVEVGR ______________________________ ______________________________ R R F G R V 0 2 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 7 1 861.48209 A8K3Q9;E7EPB3;A0PJ62;B7Z6S8;A8K7N0;Q6IPH7;P50914 A8K3Q9 5 11 RPL14 60S ribosomal protein L14 no no 2 0.018695 75.738 1 1 0.6406 0.93406 NaN 1 Median NaN NaN NaN 0 0 Median 0.6406 0.93406 NaN 1 0 Median 51764000 45703000 6061000 37499000 37499000 0 14265000 8204500 6061000 9995 596;532 10262 35791;35792 53867;53868;53869 53867 3 RFVNVVPTFGK KKKTGRAKRRMQYNRRFVNVVPTFGKKKGP QYNRRFVNVVPTFGKKKGPNANS_______ R R F G K K 0 1 1 0 0 0 0 1 0 0 0 1 0 2 1 0 1 0 0 3 0 0 11 1 1262.7135 E9PR30;P62861 E9PR30 80 90 FAU 40S ribosomal protein S30 yes no 2;3 4.3162E-06 123.51 7 4 0.91104 1.2062 9.6894 11 Median 0.92848 1.2286 7.1755 7 0 Median 0.62018 1.0792 8.031 4 0 Median 1325500000 739290000 586250000 817360000 431150000 386210000 508180000 308140000 200050000 9996 1045 10263 35793;35794;35795;35796;35797;35798;35799;35800;35801;35802;35803 53870;53871;53872;53873;53874;53875;53876;53877;53878;53879;53880;53881;53882;53883;53884;53885;53886;53887;53888 53880 18 RFVNVVPTFGKK KKKTGRAKRRMQYNRRFVNVVPTFGKKKGP YNRRFVNVVPTFGKKKGPNANS________ R R F K K K 0 1 1 0 0 0 0 1 0 0 0 2 0 2 1 0 1 0 0 3 0 0 12 2 1390.8085 E9PR30;P62861 E9PR30 80 91 FAU 40S ribosomal protein S30 yes no 3 0.0022614 53.6 2 2 0.718 1.0715 7.0667 4 Median 0.9137 1.1175 0.15764 2 0 Median 0.56808 0.99693 4.4115 2 0 Median 210960000 114610000 96352000 167900000 88762000 79137000 43065000 25850000 17215000 9997 1045 10264 35804;35805;35806;35807 53889;53890;53891;53892;53893 53890 5 RFYPAEWQDFLDSLQK QDTPKQIRSKINVYKRFYPAEWQDFLDSLQ FYPAEWQDFLDSLQKRKMEVE_________ K R F Q K R 1 1 0 2 0 2 1 0 0 0 2 1 0 2 1 1 0 1 1 0 0 0 16 1 2041.9898 Q9Y3C1 Q9Y3C1 157 172 NOP16 Nucleolar protein 16 yes yes 3 0.0018409 79.514 3 2 0.65438 0.91401 22.09 4 Median 0.7761 1.0374 16.19 2 0 Median 0.51226 0.78274 20.212 2 0 Median 26762000 16314000 10448000 11577000 6531000 5045900 15185000 9782700 5402100 9998 1817 10265 35808;35809;35810;35811;35812 53894;53895;53896;53897;53898;53899;53900;53901;53902 53895 9 RGAPAAATAPAPTAHK SFKLNRKKLEGGGERRGAPAAATAPAPTAH GAPAAATAPAPTAHKAKKAAPGAAGSRRAD R R G H K A 7 1 0 0 0 0 0 1 1 0 0 1 0 0 3 0 2 0 0 0 0 0 16 1 1486.8005 Q92522 Q92522 128 143 H1FX Histone H1x yes yes 2;3;4 2.2034E-10 122.08 10 4 0.66357 0.92748 13.981 14 Median 0.68829 0.90078 15.723 10 0 Median 0.59291 1.0034 4.6987 4 0 Median 720160000 430600000 289560000 583500000 343700000 239800000 136660000 86897000 49764000 9999 1671 10266 35813;35814;35815;35816;35817;35818;35819;35820;35821;35822;35823;35824;35825;35826 53903;53904;53905;53906;53907;53908;53909;53910;53911;53912;53913;53914;53915;53916;53917;53918;53919;53920;53921;53922 53911 19 RGAPPSSNIEDFHGLLPK RGPGPLQERSLFEKKRGAPPSSNIEDFHGL PPSSNIEDFHGLLPKGYPHLCSICDLPVHS K R G P K G 1 1 1 1 0 0 1 2 1 1 2 1 0 1 3 2 0 0 0 0 0 0 18 1 1934.001 A0A0R4J2E8;A8MXP9;P43243;D6REM6;Q68D11;D6R991;H0Y8T4 A0A0R4J2E8 270 287 MATR3;DKFZp686K23100 Matrin-3 yes no 3;4 1.4217E-18 138.98 3 2 1.0424 1.4767 125.35 4 Median 0.37601 0.49611 6.5728 2 0 Median 2.8445 4.3431 4.88 2 0 Median 57329000 37399000 19931000 45720000 34192000 11528000 11609000 3206700 8402400 10000 445 10267 35827;35828;35829;35830;35831 53923;53924;53925;53926;53927;53928;53929;53930;53931 53925 9 RGDLPFVVPR DAMNREVSSLKNKLRRGDLPFVVPRRMARK KNKLRRGDLPFVVPRRMARKGAGDGSDEEV R R G P R R 0 2 0 1 0 0 0 1 0 0 1 0 0 1 2 0 0 0 0 2 0 0 10 1 1154.656 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1923 1932 MYH9;FLJ00279 Myosin-9 no no 2;3 0.00013277 94.692 7 2 0.92977 1.245 66.66 9 Median 0.92436 1.2388 13.063 7 0 Median 4.1833 5.5755 22.155 2 0 Median 186820000 86386000 100430000 177400000 84331000 93068000 9419700 2055100 7364600 10001 61;490 10268 35832;35833;35834;35835;35836;35837;35838;35839;35840 53932;53933;53934;53935;53936;53937;53938;53939;53940;53941;53942;53943;53944;53945;53946;53947;53948;53949 53943 18 RGDTVATLSER VDAGQIILQEAVPVKRGDTVATLSERVKLA VPVKRGDTVATLSERVKLAEHKIFPAALQL K R G E R V 1 2 0 1 0 0 1 1 0 0 1 0 0 0 0 1 2 0 0 1 0 0 11 1 1203.6208 Q3B7A7;Q59HH3;P22102;B4DJ93 Q3B7A7 965 975 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 0.044606 37.995 1 8.4746 11.411 NaN 1 Median NaN NaN NaN 0 0 Median 8.4746 11.411 NaN 1 0 Median 5282700 484850 4797800 0 0 0 5282700 484850 4797800 10002 1289 10269 35841 53950 53950 1 RGDTYELQVR SAPTFINFPAKGKPKRGDTYELQVRGFSAE KGKPKRGDTYELQVRGFSAEQIARWIADRT K R G V R G 0 2 0 1 0 1 1 1 0 0 1 0 0 0 0 0 1 0 1 1 0 0 10 1 1235.6258 Q96SP2;B4DH58;A0A087WU53;Q9H0U3 Q96SP2 33 42 MAGT1 Magnesium transporter protein 1 yes no 2 0.032576 46.158 1 0.50255 0.67045 NaN 1 Median 0.50255 0.67045 NaN 1 0 Median NaN NaN NaN 0 0 Median 14197000 8300900 5895800 14197000 8300900 5895800 0 0 0 10003 339 10270 35842 53951 53951 0 RGEGEDEVEEESTALQK TAKVAEIRDQKADKKRGEGEDEVEEESTAL EGEDEVEEESTALQKTDKKEILKKSEKDTN K R G Q K T 1 1 0 1 0 1 6 2 0 0 1 1 0 0 0 1 1 0 0 1 0 0 17 1 1904.8599 Q96T23;H0YCN2;H0YEX0 Q96T23 800 816 RSF1 Remodeling and spacing factor 1 yes no 3 0.049744 11.226 1 0.62612 0.8786 NaN 1 Median NaN NaN NaN 0 0 Median 0.62612 0.8786 NaN 1 0 Median 2663400 1702700 960750 0 0 0 2663400 1702700 960750 10004 1702 10271 35843 53952 53952 1 RGEYIYTGNAK VDDDSDLNVVASFDRRGEYIYTGNAKGKIL SFDRRGEYIYTGNAKGKILVLKTDSQDLVA R R G A K G 1 1 1 0 0 0 1 2 0 1 0 1 0 0 0 0 1 0 2 0 0 0 11 1 1270.6306 B4DLF8;A0A024R9B5;B4DMM7;Q15291 B4DLF8 35 45 RBBP5 Retinoblastoma-binding protein 5 yes no 2 1.7776E-06 132.25 2 0.82482 1.0656 NaN 1 Median 0.82482 1.0656 NaN 1 0 Median NaN NaN NaN 0 0 Median 8752200 5517100 3235100 8752200 5517100 3235100 0 0 0 10005 215 10272 35844;35845 53953;53954;53955 53953 3 RGFAFVTFDDHDSVDK IEVIEIMTDRGSGKKRGFAFVTFDDHDSVD GFAFVTFDDHDSVDKIVIQKYHTVNGHNCE K R G D K I 1 1 0 4 0 0 0 1 1 0 0 1 0 3 0 1 1 0 0 2 0 0 16 1 1854.8537 F8W6I7;A0A024RB53;A0A024RAZ7;P09651;Q0VAC0;Q6IPF2;A0A024RC46;F8VTQ5;F8VZ49;Q9BSM5;A0A024QZ98;Q32P51;H0YH80 F8W6I7 146 161 HNRNPA1;HNRPA1;hCG_2020860;RP11-78J21.1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 3 0.028383 64.537 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10006 253 10273 35846 53956 53956 1 RGFAFVTFDDHDTVDK IETIEVMEDRQSGKKRGFAFVTFDDHDTVD GFAFVTFDDHDTVDKIVVQKYHTINGHNCE K R G D K I 1 1 0 4 0 0 0 1 1 0 0 1 0 3 0 0 2 0 0 2 0 0 16 1 1868.8693 B4E3E6;B4DDB6;P51991 B4E3E6 145 160 HNRPA3;HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes no 3 0.043597 10.768 1 3.8616 5.4772 NaN 1 Median NaN NaN NaN 0 0 Median 3.8616 5.4772 NaN 1 0 Median 2761500 611890 2149600 0 0 0 2761500 611890 2149600 10007 793 10274 35847 53957 53957 1 RGFEVVYMTEPIDEYCVQQLK KEQVANSAFVERVRKRGFEVVYMTEPIDEY YMTEPIDEYCVQQLKEFDGKSLVSVTKEGL K R G L K E 0 1 0 1 1 2 3 1 0 1 1 1 1 1 1 0 1 0 2 3 0 0 21 1 2603.24 A0A024RD80;P08238;B4DMA2;B4DGL0;Q9H6X9;A8K3W9 A0A024RD80 506 526 HSP90AB1 Heat shock protein HSP 90-beta no no 3 2.1446E-05 84.107 1 0.50616 0.67906 NaN 1 Median 0.50616 0.67906 NaN 1 0 Median NaN NaN NaN 0 0 Median 3668700 2565000 1103700 3668700 2565000 1103700 0 0 0 10008 312;598 10275 35848 53958;53959;53960;53961 53960 117 4 RGFGFVEFEDPRDADDAVYELDGK RFFKGYGRIRDIDLKRGFGFVEFEDPRDAD DPRDADDAVYELDGKELCSERVTIEHARAR K R G G K E 2 2 0 5 0 0 3 3 0 0 1 1 0 3 1 0 0 0 1 2 0 0 24 2 2746.2511 A0A024R6D8;Q59EK7;Q13243;B4DJK0;B4DUA4;G3V5K8 A0A024R6D8 37 60 SFRS5;SRSF5 Serine/arginine-rich splicing factor 5 yes no 4 0.0002428 38.135 2 0.29232 0.35644 3.1914 2 Median 0.29232 0.35644 3.1914 2 0 Median NaN NaN NaN 0 0 Median 29177000 21989000 7187900 29177000 21989000 7187900 0 0 0 10009 160 10276 35849;35850 53962;53963 53963 2 RGFGFVTFDDHDPVDK IDTIEIITDRQSGKKRGFGFVTFDDHDPVD GFGFVTFDDHDPVDKIVLQKYHTINGHNAE K R G D K I 0 1 0 4 0 0 0 2 1 0 0 1 0 3 1 0 1 0 0 2 0 0 16 1 1850.8588 P22626;A0A024RA28;A0A087WUI2;I6L957 P22626 153 168 HNRNPA2B1;HNRPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 3 0.0022657 107.62 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3382000 3382000 0 0 0 0 3382000 3382000 0 10010 1290 10277 35851;35852 53964;53965 53965 2 RGFGFVYFQNHDAADK VEKAEIIADKQSGKKRGFGFVYFQNHDAAD GFGFVYFQNHDAADKAAVVKFHPIQGHRVE K R G D K A 2 1 1 2 0 1 0 2 1 0 0 1 0 3 0 0 0 0 1 1 0 0 16 1 1870.8751 Q13151 Q13151 139 154 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 3 2.8281E-06 107.82 2 0.3393 0.44662 6.5371 2 Median 0.3393 0.44662 6.5371 2 0 Median NaN NaN NaN 0 0 Median 30855000 22899000 7955300 30855000 22899000 7955300 0 0 0 10011 1464 10278 35853;35854 53966;53967;53968;53969 53966 4 RGFVLQDTVEQLR QQTKITQDIFQQLLKRGFVLQDTVEQLRCE LKRGFVLQDTVEQLRCEHCARFLADRFVEG K R G L R C 0 2 0 1 0 2 1 1 0 0 2 0 0 1 0 0 1 0 0 2 0 0 13 1 1559.842 A8K492;P56192;B4DF61;B4E0E9;H0YHV5 A8K492 376 388 MARS Methionine--tRNA ligase, cytoplasmic yes no 3 0.0026772 28.64 2 0.73427 0.97437 NaN 1 Median 0.73427 0.97437 NaN 1 0 Median NaN NaN NaN 0 0 Median 19416000 14090000 5326000 19416000 14090000 5326000 0 0 0 10012 602 10279 35855;35856 53970;53971;53972 53971 3 RGGFAVQAK ______________________________ ATKRKRRGGFAVQAKKPKRNEIDAEPPAKR R R G A K K 2 1 0 0 0 1 0 2 0 0 0 1 0 1 0 0 0 0 0 1 0 0 9 1 932.5192 Q8TDN6;A0JLQ5;B4E0B8;Q9NUW4;Q05CP8 Q8TDN6 9 17 BRIX1;BXDC2;CCDC6 Ribosome biogenesis protein BRX1 homolog yes no 2 0.0026292 85.265 1 1 0.91854 1.351 21.729 2 Median 1.2092 1.5754 NaN 1 0 Median 0.69776 1.1586 NaN 1 0 Median 48237000 23473000 24764000 24629000 9750300 14879000 23607000 13722000 9885300 10013 1659 10280 35857;35858 53973;53974 53973 2 RGGNRFEPYANPTK ERPAQNEKRKEKNIKRGGNRFEPYANPTKR KRGGNRFEPYANPTKRYRAFITNIPFDVKW K R G T K R 1 2 2 0 0 0 1 2 0 0 0 1 0 1 2 0 1 0 1 0 0 0 14 2 1605.8012 P52272;A0A087X0X3;M0R019;B4DEG4;M0R2T0;M0R0N3;M0QYQ7;M0R0Y6 P52272 56 69 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 3 4.8851E-05 105.95 2 0.3109 0.38117 2.4962 2 Median 0.3109 0.38117 2.4962 2 0 Median NaN NaN NaN 0 0 Median 54351000 39928000 14423000 54351000 39928000 14423000 0 0 0 10014 1363 10281 35859;35860 53975;53976;53977;53978;53979 53976 5 RGGPPFAFVEFEDPRDAEDAVYGR FYKYGAIRDIDLKNRRGGPPFAFVEFEDPR EFEDPRDAEDAVYGRDGYDYDGYRLRVEFP R R G G R D 3 3 0 3 0 0 3 3 0 0 0 0 0 3 3 0 0 0 1 2 0 0 24 2 2696.2619 J3KTL2;Q07955;Q59FA2 J3KTL2 51 74 SRSF1 Serine/arginine-rich splicing factor 1 yes no 4 1.8239E-06 51.234 3 2 0.52428 0.64544 22.459 5 Median 0.52428 0.63446 7.9518 3 0 Plateau 0.773 0.89328 12.876 2 0 Median 59192000 36837000 22355000 43532000 28712000 14819000 15660000 8124100 7536000 10015 1139 10282 35861;35862;35863;35864;35865 53980;53981;53982;53983;53984;53985;53986 53986 7 RGGSPAVTLLISEK EINDIKDTDVIMKRKRGGSPAVTLLISEKI KRGGSPAVTLLISEKISVDITLALESKSSW K R G E K I 1 1 0 0 0 0 1 2 0 1 2 1 0 0 1 2 1 0 0 1 0 0 14 1 1426.8144 Q8N884 Q8N884 302 315 MB21D1 Cyclic GMP-AMP synthase yes yes 2;3 0.00012887 85.973 6 3 0.91609 1.3215 15.562 8 Median 1.0667 1.3833 17.404 5 0 Median 0.81298 1.2535 8.2473 3 0 Median 98399000 48760000 49639000 78218000 38531000 39687000 20181000 10229000 9951900 10016 1643 10283 35866;35867;35868;35869;35870;35871;35872;35873;35874 53987;53988;53989;53990;53991;53992;53993;53994;53995;53996;53997 53994 11 RGIEKPPFELPDFIK VPRHWCFKRKYLQGKRGIEKPPFELPDFIK RGIEKPPFELPDFIKRTGIQEMREALQEKE K R G I K R 0 1 0 1 0 0 2 1 0 2 1 2 0 2 3 0 0 0 0 0 0 0 15 2 1784.9825 Q13435;Q7Z3K9;E9PPJ0 Q13435 515 529 SF3B2;DKFZp781L0540 Splicing factor 3B subunit 2 yes no 3 0.0009944 44.925 1 1 0.94386 1.3266 119.64 2 Median 0.48659 0.56933 NaN 1 0 Median 1.8308 3.0913 NaN 1 0 Median 11869000 6010400 5858600 6156000 3878900 2277100 5713000 2131600 3581500 10017 1470 10284 35875;35876 53998;53999;54000;54001 54000 4 RGILTLK MGQKDSYVGDEAQSKRGILTLKYPIEHGIV VGDEAQSKRGILTLKYPIEHGIVTNWDDME K R G L K Y 0 1 0 0 0 0 0 1 0 1 2 1 0 0 0 0 1 0 0 0 0 0 7 1 799.52797 B7Z6P1;P68133;P68032;A8K3K1;D2JYH4;P63267;P62736;B3KW67;Q13707;Q7Z7J6;A6NL76;B4DUI8;C9JUM1;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B3KUD3;Q6S8J3;A5A3E0;G5E9R0;E7EVS6;P0CG38;C9JZR7;A1E282;C9JTX5;P0CG39;L0R5C4;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 Q53GK6 62 68 ACTA1;ACTC1;ACTA2;ACTG2;ACTB;PS1TP5BP1;POTEE;POTEF;POTEI;POTEJ;POTEM;ACTG1 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2 0.022075 79.451 2 0.70429 0.9303 NaN 1 Median 0.70429 0.9303 NaN 1 0 Median NaN NaN NaN 0 0 Median 2031200000 1123700000 907470000 2031200000 1123700000 907470000 0 0 0 10018 1388;1420;914 10285 35877;35878 54002;54003;54004 54003 3 RGITNLCVIGGDGSLTGADTFR REREGRLRAAYNLVKRGITNLCVIGGDGSL VIGGDGSLTGADTFRSEWSDLLSDLQKAGK K R G F R S 1 2 1 2 1 0 0 5 0 2 2 0 0 1 0 1 3 0 0 1 0 0 22 1 2279.1328 A0A024R0Y5;P08237;A0A0S2Z4A1;Q96I60;A0A0S2Z4I1;F8VSL1;F8VX13;F8VNX2;F8VZQ1 A0A024R0Y5 108 129 PFKM ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type yes no 3 2.5628E-05 80.702 2 0.69056 0.93685 15.48 2 Median 0.69056 0.93685 15.48 2 0 Median NaN NaN NaN 0 0 Median 24161000 15012000 9149700 24161000 15012000 9149700 0 0 0 10019 44 10286 35879;35880 54005;54006;54007;54008 54006 4 RGLALALFGGEPK FASIAPSIYGHEDIKRGLALALFGGEPKNP IKRGLALALFGGEPKNPGGKHKVRGDINVL K R G P K N 2 1 0 0 0 0 1 3 0 0 3 1 0 1 1 0 0 0 0 0 0 0 13 1 1327.7612 B4DSV5;B3KXZ4;H0Y8E6;P49736;B7Z8Z6 B4DSV5 363 375 MCM2 DNA helicase;DNA replication licensing factor MCM2 yes no 3 0.0011378 43.991 1 0.99367 1.2739 NaN 1 Median 0.99367 1.2739 NaN 1 0 Median NaN NaN NaN 0 0 Median 2479800 958880 1520900 2479800 958880 1520900 0 0 0 10020 790 10287 35881 54009 54009 1 RGLELLAASEAPRDPPGQAK ______________________________ LAASEAPRDPPGQAKPRGAPVKRPRKTKAI R R G A K P 4 2 0 1 0 1 2 2 0 0 3 1 0 0 3 1 0 0 0 0 0 0 20 2 2075.1124 A0A024R1T1;Q86WX3;F8WFE7 A0A024R1T1 8 27 RPS19BP1 Active regulator of SIRT1 yes no 3 0.036052 42.981 1 0.85212 0.93177 NaN 1 Median 0.85212 0.93177 NaN 1 0 Median NaN NaN NaN 0 0 Median 2129300 1094900 1034500 2129300 1094900 1034500 0 0 0 10021 67 10288 35882 54010 54010 1 RGLFDEEMNEILTDPSDDTK DPEESHRLPVEVAYKRGLFDEEMNEILTDP EEMNEILTDPSDDTKGFFDPNTEENLTYLQ K R G T K G 0 1 1 4 0 0 3 1 0 1 2 1 1 1 1 1 2 0 0 0 0 0 20 1 2324.0478 Q15149;D3DWL0;Q96IE3 Q15149 4206 4225 PLEC;PLEC1 Plectin yes no 3 0.0014802 39.935 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5287700 5287700 0 5287700 5287700 0 0 0 0 10022 1507 10289 35883 54011 54011 1 RGNLNFTCDGNSVISPVGNR KFAYRFSNLLGTVYRRGNLNFTCDGNSVIS FTCDGNSVISPVGNRVTVFDLKNNKSDTLP R R G N R V 0 2 4 1 1 0 0 3 0 1 1 0 0 1 1 2 1 0 0 2 0 0 20 1 2176.0443 Q15269;C9J544 Q15269 17 36 PWP2 Periodic tryptophan protein 2 homolog yes no 3 1.3349E-26 138.82 3 0.80417 1.0638 0.985 2 Median 0.80417 1.0638 0.985 2 0 Median NaN NaN NaN 0 0 Median 25989000 15005000 10985000 25989000 15005000 10985000 0 0 0 10023 1508 10290 35884;35885;35886 54012;54013;54014;54015;54016 54012 5 RGPCIIYNEDNGIIK RAGKGKMRNRRRIQRRGPCIIYNEDNGIIK RGPCIIYNEDNGIIKAFRNIPGITLLNVSK R R G I K A 0 1 2 1 1 0 1 2 0 4 0 1 0 0 1 0 0 0 1 0 0 0 15 1 1760.888 P36578;Q59GY2;B4DFI6;H3BM89;B4DMJ6;Q53G74;B4DMJ2 P36578 205 219 RPL4 60S ribosomal protein L4 yes no 2;3 5.0649E-23 150.06 7 2 0.66952 0.88207 4.7166 8 Median 0.67133 0.88837 3.3587 7 0 Median 0.48818 0.81126 NaN 1 0 Median 763240000 444800000 318430000 723230000 425370000 297860000 40005000 19427000 20578000 10024 1325 10291 35887;35888;35889;35890;35891;35892;35893;35894;35895 54017;54018;54019;54020;54021;54022;54023;54024;54025;54026;54027;54028;54029;54030;54031;54032;54033;54034 54029 18 RGPFELEAFYSDPQGVPYPEAK RNHAAPFSKVLTFLRRGPFELEAFYSDPQG AFYSDPQGVPYPEAKIGRFVVQNVSAQKDG R R G A K I 2 1 0 1 0 1 3 2 0 0 1 1 0 2 4 1 0 0 2 1 0 0 22 1 2496.1961 A0A024RDQ0;A0A024RDS1;Q92598;B4DF68;B4DZB4;A0A0A0MSM0;B4DY72 A0A024RDQ0 437 458 HSPH1 Heat shock protein 105 kDa yes no 3 0.00027068 59.678 3 0.25371 0.33996 NaN 1 Median 0.25371 0.33996 NaN 1 0 Median NaN NaN NaN 0 0 Median 19461000 14576000 4885400 19461000 14576000 4885400 0 0 0 10025 320 10292 35896;35897;35898 54035;54036;54037 54035 3 RGPGPLTLTRPRPR QVDTLLRGVDSLLYRRGPGPLTLTRPRPRK RRGPGPLTLTRPRPRKRAKVEDQELPTQPE R R G P R K 0 4 0 0 0 0 0 2 0 0 2 0 0 0 4 0 2 0 0 0 0 0 14 3 1572.9325 Q4VC44;I3L188;J3KNW1;B3KRZ0 Q4VC44 376 389 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 4 0.042055 23.842 1 0.64843 0.7764 NaN 1 Median 0.64843 0.7764 NaN 1 0 Median NaN NaN NaN 0 0 Median 10101000 6220600 3880000 10101000 6220600 3880000 0 0 0 10026 1536 10293 35899 54038 54038 1 RGPLAGLGPGSTPR FPAAPSPRTPGTGSRRGPLAGLGPGSTPRT RRGPLAGLGPGSTPRTASRKGLPLGSAVSS R R G P R T 1 2 0 0 0 0 0 4 0 0 2 0 0 0 3 1 1 0 0 0 0 0 14 1 1334.7419 Q8WUM0 Q8WUM0 17 30 NUP133 Nuclear pore complex protein Nup133 yes yes 3 0.041985 16.529 1 1 0.60985 0.78762 52.522 2 Median 0.42347 0.54329 NaN 1 0 Median 0.87826 1.1418 NaN 1 0 Median 8738400 5879500 2859000 6160400 4461600 1698800 2578000 1417900 1160200 10027 1666 10294 35900;35901 54039;54040 54039 2 RGPNYTSGYGTNSELSNPSETESER SVQGSRSYSGRGRGRRGPNYTSGYGTNSEL TNSELSNPSETESERKDELSDWSLAGEDDR R R G E R K 0 2 3 0 0 0 4 3 0 0 1 0 0 0 2 5 3 0 2 0 0 0 25 1 2731.1958 A0A0F7KYT8;A0A0F7L0Q8;B4DXZ6;A0A0F7L1S3;P51114;B4DM78;E7EU85;B4DGH9;E9PFF5;B4DM21 A0A0F7KYT8 420 444 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 3 0.00061133 81.329 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10028 438 10295 35902 54041 54041 1 RGPQLVCTGSDDGTVK LKGHTSFVNSCYPARRGPQLVCTGSDDGTV GPQLVCTGSDDGTVKLWDIRKKAAIQTFRN R R G V K L 0 1 0 2 1 1 0 3 0 0 1 1 0 0 1 1 2 0 0 2 0 0 16 1 1688.8152 B2R9I9;A0MNP2;Q96DI7 B2R9I9 162 177 WDR57;SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 2;3 0.0001906 84.365 5 0.62612 0.80128 7.5831 3 Median 0.62612 0.80128 7.5831 3 0 Median NaN NaN NaN 0 0 Median 38945000 24353000 14592000 38945000 24353000 14592000 0 0 0 10029 530 10296 35903;35904;35905;35906;35907 54042;54043;54044;54045;54046;54047;54048 54046 7 RGTGGVDTAAVGGVFDVSNADR HEKFSEVLKRLRLQKRGTGGVDTAAVGGVF TAAVGGVFDVSNADRLGFSEVELVQMVVDG K R G D R L 3 2 1 3 0 0 0 5 0 0 0 0 0 1 0 1 2 0 0 4 0 0 22 1 2120.0247 V9HWH2;V9HW77;A0A0S2Z471;P12277;B4DP56;H0YJG0 V9HWH2 320 341 HEL-S-29;HEL-211;CKB Creatine kinase B-type yes no 3 0.04255 9.9828 1 0.56744 0.72326 NaN 1 Median 0.56744 0.72326 NaN 1 0 Median NaN NaN NaN 0 0 Median 5719600 3637300 2082400 5719600 3637300 2082400 0 0 0 10030 460 10297 35908 54049 54049 1 RGTQPVGSLELK TTGPPHLVPPQPLPRRGTQPVGSLELKSAC LPRRGTQPVGSLELKSACQVTAGGSSQCYR R R G L K S 0 1 0 0 0 1 1 2 0 0 2 1 0 0 1 1 1 0 0 1 0 0 12 1 1283.7197 A0A024R0F1;Q9UNY4 A0A024R0F1 498 509 TTF2 Transcription termination factor 2 yes no 2 0.00074467 113.69 4 2 0.89725 1.2716 21.848 6 Median 1.1064 1.4673 26.321 4 0 Median 0.80059 1.2266 7.1195 2 0 Median 48652000 25747000 22906000 33549000 17656000 15892000 15103000 8090200 7013200 10031 33 10298 35909;35910;35911;35912;35913;35914 54050;54051;54052;54053;54054;54055;54056 54051 7 RGVLANALAGRDEK KTPEITVSIIKELNRRGVLANALAGRDEKE RRGVLANALAGRDEKEISHVLNFLIRNLSQ R R G E K E 3 2 1 1 0 0 1 2 0 0 2 1 0 0 0 0 0 0 0 1 0 0 14 2 1468.811 Q8TED0;H0Y8P4 Q8TED0 403 416 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 3 1.0231E-05 116.19 2 1 1.1889 1.5266 41.675 3 Plateau 1.0045 1.2444 28.912 2 0 Median 0.47002 0.6634 NaN 1 0 Median 21060000 9171300 11889000 17782000 7231200 10550000 3278700 1940100 1338600 10032 1660 10299 35915;35916;35917 54057;54058;54059;54060 54058 4 RGVVTLLSDYEVCK MEPQLRQLGLPTALKRGVVTLLSDYEVCKE KRGVVTLLSDYEVCKEGDVLTPEQARVLKL K R G C K E 0 1 0 1 1 0 1 1 0 0 2 1 0 0 0 1 1 0 1 3 0 0 14 1 1637.8447 A0A024RAE1;Q9UKD2 A0A024RAE1 164 177 C1orf33;MRTO4 mRNA turnover protein 4 homolog yes no 2;3 1.5495E-10 149.35 4 0.75495 0.99511 4.0512 3 Median 0.75495 0.99511 4.0512 3 0 Median NaN NaN NaN 0 0 Median 61087000 34002000 27085000 61087000 34002000 27085000 0 0 0 10033 240 10300 35918;35919;35920;35921 54061;54062;54063;54064;54065;54066 54063 6 RHATAEEVEEEERDR KKPKRNEIDAEPPAKRHATAEEVEEEERDR RHATAEEVEEEERDRIPGPVCKGKWKNKER K R H D R I 2 3 0 1 0 0 6 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 15 2 1854.8456 Q8TDN6;B4E0B8;Q9NUW4 Q8TDN6 32 46 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 3 0.0023271 79.885 2 0.83018 1.0243 19.134 2 Median 0.83018 1.0243 19.134 2 0 Median NaN NaN NaN 0 0 Median 9747800 5112200 4635600 9747800 5112200 4635600 0 0 0 10034 1659 10301 35922;35923 54067;54068 54067 1 RHFNAPSHIR KFNPFVTSDRSKNRKRHFNAPSHIRRKIMS SKNRKRHFNAPSHIRRKIMSSPLSKELRQK K R H I R R 1 2 1 0 0 0 0 0 2 1 0 0 0 1 1 1 0 0 0 0 0 0 10 1 1233.6479 J3QRI7;J3QQQ9;J3QQV1;J3QRC4;Q6IBH6;P61254;J3KTJ8;A0A024RBF6;J3KSS0 J3QRI7 17 26 RPL26;hCG_26523 60S ribosomal protein L26 yes no 2;3;4 2.9961E-08 133.23 8 0.79185 1.0633 9.3143 7 Median 0.79185 1.0633 9.3143 7 0 Median NaN NaN NaN 0 0 Median 187970000 106420000 81551000 187970000 106420000 81551000 0 0 0 10035 1142 10302 35924;35925;35926;35927;35928;35929;35930;35931 54069;54070;54071;54072;54073;54074;54075;54076;54077;54078;54079 54078 11 RHFNAPSHVR KFNPFVTSDRSKNRKRHFNAPSHVRRKIMS SKNRKRHFNAPSHVRRKIMSSPLSKELRQK K R H V R R 1 2 1 0 0 0 0 0 2 0 0 0 0 1 1 1 0 0 0 1 0 0 10 1 1219.6323 Q9UNX3;E5RIT6;E5RHH1 Q9UNX3 17 26 RPL26L1 60S ribosomal protein L26-like 1 yes no 3;4 0.0011019 80.24 2 0.92083 1.2097 NaN 1 Median 0.92083 1.2097 NaN 1 0 Median NaN NaN NaN 0 0 Median 5031400 4361400 669980 5031400 4361400 669980 0 0 0 10036 1797 10303 35932;35933 54080;54081 54080 2 RHIEIFTDLSSR MDVIQHETIGKKFEKRHIEIFTDLSSRFSK FEKRHIEIFTDLSSRFSKSQLDIIIHSLKK K R H S R F 0 2 0 1 0 0 1 0 1 2 1 0 0 1 0 2 1 0 0 0 0 0 12 1 1472.7736 P13010;Q53TC2;C9JZ81 P13010 130 141 XRCC5 X-ray repair cross-complementing protein 5 yes no 3 1.178E-05 106.13 4 0.52794 0.72583 4.8108 4 Median 0.52794 0.72583 4.8108 4 0 Median NaN NaN NaN 0 0 Median 321650000 210620000 111030000 321650000 210620000 111030000 0 0 0 10037 1262 10304 35934;35935;35936;35937 54082;54083;54084;54085;54086;54087;54088 54086 7 RHIISVHTK CLHCDHKSSNSSDLKRHIISVHTKDYPHKC NSSDLKRHIISVHTKDYPHKCDMCDKGFHR K R H T K D 0 1 0 0 0 0 0 0 2 2 0 1 0 0 0 1 1 0 0 1 0 0 9 1 1089.6407 A0A024RC04;B7ZKJ5;P17010;Q8WWU0;Q8WXB7;E9PEP7;B4DH67;B4DS73;Q9Y462 A0A024RC04 650 658 ZFX;ZNF711 Zinc finger X-chromosomal protein;Zinc finger protein 711 yes no 3 0.043223 22.641 1 0.72715 0.89425 NaN 1 Median 0.72715 0.89425 NaN 1 0 Median NaN NaN NaN 0 0 Median 1903300 1037800 865450 1903300 1037800 865450 0 0 0 10038 286 10305 35938 54089 54089 1 RHLEAILTK VTGEETEGMDGQIYKRHLEAILTKISLKNN DGQIYKRHLEAILTKISLKNNLDHLLASLL K R H T K I 1 1 0 0 0 0 1 0 1 1 2 1 0 0 0 0 1 0 0 0 0 0 9 1 1079.6451 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 377 385 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 0.0012546 79.201 2 0.69431 0.8939 NaN 1 Median 0.69431 0.8939 NaN 1 0 Median NaN NaN NaN 0 0 Median 5415800 3150700 2265100 5415800 3150700 2265100 0 0 0 10039 748 10306 35939;35940 54090;54091 54091 2 RHLLTQR EQAYDNPHEALSRIKRHLLTQRAFKEVGIE HEALSRIKRHLLTQRAFKEVGIEFMDLYSH K R H Q R A 0 2 0 0 0 1 0 0 1 0 2 0 0 0 0 0 1 0 0 0 0 0 7 1 922.54608 Q6P2Q9;I3L0J9 Q6P2Q9 883 889 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 0.047672 20.559 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4785000 4785000 0 4785000 4785000 0 0 0 0 10040 1592 10307 35941 54092 54092 1 RHLNDLLEDR LGNEIEVMVSTEEAKRHLNDLLEDRKILAQ TEEAKRHLNDLLEDRKILAQDVAQLKEKKE K R H D R K 0 2 1 2 0 0 1 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 10 1 1279.6633 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3;B3KNC0 Q59HG1 765 774 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 3 0.017683 36.982 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2208700 0 2208700 2208700 0 2208700 0 0 0 10041 1216 10308 35942 54093 54093 1 RHLNDLLEDRK LGNEIEVMVSTEEAKRHLNDLLEDRKILAQ EEAKRHLNDLLEDRKILAQDVAQLKEKKES K R H R K I 0 2 1 2 0 0 1 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 11 2 1407.7583 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3;B3KNC0 Q59HG1 765 775 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 4 0.00046514 53.237 1 0.89321 1.0764 NaN 1 Median 0.89321 1.0764 NaN 1 0 Median NaN NaN NaN 0 0 Median 32562000 19006000 13556000 32562000 19006000 13556000 0 0 0 10042 1216 10309 35943 54094 54094 1 RHLSTCDGQNPPK PSYDLVLSKPSKGQKRHLSTCDGQNPPKKQ QKRHLSTCDGQNPPKKQAGSKFHARPRFEP K R H P K K 0 1 1 1 1 1 0 1 1 0 1 1 0 0 2 1 1 0 0 0 0 0 13 1 1508.7154 Q6NUN2;A3F769;A3F768;O15226;A2I827;A2I828;A1Z1A7;A2I830 Q6NUN2 32 44 NKRF;NRF NF-kappa-B-repressing factor yes no 3 0.022099 36.529 1 0.58102 0.75156 NaN 1 Median 0.58102 0.75156 NaN 1 0 Median NaN NaN NaN 0 0 Median 1051100 654110 396990 1051100 654110 396990 0 0 0 10043 541 10310 35944 54095 54095 1 RHLTGEFEK VLVGDGGTGKTTFVKRHLTGEFEKKYVATL KTTFVKRHLTGEFEKKYVATLGVEVHPLVF K R H E K K 0 1 0 0 0 0 2 1 1 0 1 1 0 1 0 0 1 0 0 0 0 0 9 1 1115.5724 B5MDF5;P62826;J3KQE5;F5H018;H0YFC6 B5MDF5 29 37 RAN GTP-binding nuclear protein Ran yes no 2;3 0.0011997 95.523 5 0.63676 0.83172 10.761 5 Median 0.63676 0.83172 10.761 5 0 Median NaN NaN NaN 0 0 Median 163180000 96077000 67107000 163180000 96077000 67107000 0 0 0 10044 901 10311 35945;35946;35947;35948;35949 54096;54097;54098;54099;54100;54101;54102;54103;54104 54104 9 RHPEYAVSVLLR AKDAFLGSFLYEYSRRHPEYAVSVLLRLAK YSRRHPEYAVSVLLRLAKEYEATLEECCAK R R H L R L 1 2 0 0 0 0 1 0 1 0 2 0 0 0 1 1 0 0 1 2 0 0 12 1 1438.8045 CON__P02769 CON__P02769 360 371 yes yes 3 0.00048582 63.76 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25053000 25053000 0 25053000 25053000 0 0 0 0 + 10045 952 10312 35950;35951;35952 54105;54106;54107 54106 3 RHQELLQK EARRLRWLQQEEEERRHQELLQKKKEEEQE QQEEEERRHQELLQKKKEEEQERLRKAAEA R R H Q K K 0 1 0 0 0 2 1 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 8 1 1050.5934 Q9NQS7;B3KPD3 Q9NQS7 659 666 INCENP Inner centromere protein yes no 3 0.015651 63.419 1 0.97135 1.3134 NaN 1 Median 0.97135 1.3134 NaN 1 0 Median NaN NaN NaN 0 0 Median 7437400 3715600 3721800 7437400 3715600 3721800 0 0 0 10046 1752 10313 35953 54108 54108 1 RHTDVQFYTEVGEITTDLGK VLHFHLKNAIMFGKKRHTDVQFYTEVGEIT QFYTEVGEITTDLGKHQHMHDRDDLYAEQM K R H G K H 0 1 0 2 0 1 2 2 1 1 1 1 0 1 0 0 4 0 1 2 0 0 20 1 2308.1335 Q9Y5B9 Q9Y5B9 734 753 SUPT16H FACT complex subunit SPT16 yes yes 3 1.532E-05 53.059 1 0.72992 0.96079 NaN 1 Median 0.72992 0.96079 NaN 1 0 Median NaN NaN NaN 0 0 Median 13810000 7033600 6776200 13810000 7033600 6776200 0 0 0 10047 1829 10314 35954 54109;54110;54111 54109 3 RHVTYVVAK QLRSLYKKAGLGKEKRHVTYVVAKKGVGRK GLGKEKRHVTYVVAKKGVGRKVRRPAGVRG K R H A K K 1 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 1 3 0 0 9 1 1071.6189 Q8IY81;B4DKU3 Q8IY81 796 804 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2;3 0.00042739 96.665 6 0.75752 0.99751 13.14 6 Median 0.75752 0.99751 13.14 6 0 Median NaN NaN NaN 0 0 Median 156150000 91000000 65148000 156150000 91000000 65148000 0 0 0 10048 1628 10315 35955;35956;35957;35958;35959;35960 54112;54113;54114;54115;54116;54117;54118;54119;54120;54121;54122 54118 11 RIACDEEFSDSEDEGEGGRR GEDPDKRISIRASDKRIACDEEFSDSEDEG EEFSDSEDEGEGGRRNVADHKKGAKKARIE K R I R R N 1 3 0 3 1 0 5 3 0 1 0 0 0 1 0 2 0 0 0 0 0 0 20 2 2312.9564 Q92769;B3KUJ5;Q59GB9 Q92769 414 433 HDAC2 Histone deacetylase 2;Histone deacetylase yes no 3 7.6464E-05 86.213 2 0.45592 0.5664 75.229 2 Median 0.45592 0.5664 75.229 2 0 Median NaN NaN NaN 0 0 Median 9986700 5820900 4165800 9986700 5820900 4165800 0 0 0 10049 1675 10316 35961;35962 54123;54124 54123 2 RIACEEEFSDSEEEGEGGRK EDDPDKRISICSSDKRIACEEEFSDSEEEG EEFSDSEEEGEGGRKNSSNFKKAKRVKTED K R I R K N 1 2 0 1 1 0 7 3 0 1 0 1 0 1 0 2 0 0 0 0 0 0 20 2 2312.9815 Q6IT96;B5BU61;Q13547;B4DRG0;Q5HYD4 Q6IT96 413 432 HDAC1;DKFZp686H12203 Histone deacetylase;Histone deacetylase 1 yes no 3 1.4006E-11 123.43 1 0.48034 0.52326 NaN 1 Median 0.48034 0.52326 NaN 1 0 Median NaN NaN NaN 0 0 Median 2060200 1405400 654820 2060200 1405400 654820 0 0 0 10050 894 10317 35963 54125;54126 54126 2 RIAELSEDDQK INKPLIVVANKCDVKRIAELSEDDQKIFTD CDVKRIAELSEDDQKIFTDLQSEGLPVIET K R I Q K I 1 1 0 2 0 1 2 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 11 1 1302.6416 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;B4DHR2 Q53GS0 295 305 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2;3 8.1277E-17 166.86 5 3 0.74344 1.0347 10.017 7 Median 0.75391 0.9969 2.6398 4 0 Median 0.7193 1.2097 9.8488 3 0 Median 500030000 280530000 219500000 344610000 190490000 154120000 155430000 90045000 65381000 10051 975 10318 35964;35965;35966;35967;35968;35969;35970;35971 54127;54128;54129;54130;54131;54132;54133;54134;54135;54136;54137;54138 54138 11 RIALSVSR R I S R 1 2 0 0 0 0 0 0 0 1 1 0 0 0 0 2 0 0 0 1 0 0 8 1 900.5505 REV__A0A1B0GTB2 yes yes 3 0.0049688 89.752 2 0.77919 1.0632 8.869 2 Median 0.77919 1.0632 8.869 2 0 Median NaN NaN NaN 0 0 Median 65313000 36832000 28481000 65313000 36832000 28481000 0 0 0 + 10052 1843 10319 35972;35973 54139;54140 54139 2 RIALTDNALIAR NELIYKRGYGKINKKRIALTDNALIARSLG NKKRIALTDNALIARSLGKYGIICMEDLIH K R I A R S 3 2 1 1 0 0 0 0 0 2 2 0 0 0 0 0 1 0 0 0 0 0 12 1 1325.7779 A0A024R814;P18124;A8MUD9;O95036 A0A024R814 177 188 RPL7;WUGSC:H_RG054D04.1 60S ribosomal protein L7 yes no 2;3 4.7622E-30 172.13 8 3 0.66244 0.91783 6.4422 11 Median 0.66745 0.91501 5.7371 8 0 Median 0.64855 0.99626 9.5936 3 0 Plateau 702280000 413840000 288440000 632140000 370470000 261670000 70141000 43369000 26772000 10053 189 10320 35974;35975;35976;35977;35978;35979;35980;35981;35982;35983;35984 54141;54142;54143;54144;54145;54146;54147;54148;54149;54150;54151;54152;54153;54154;54155;54156 54152 16 RIANLQTDLSDGLR TFTRWCNEHLKCVSKRIANLQTDLSDGLRL KRIANLQTDLSDGLRLIALLEVLSQKKMHR K R I L R L 1 2 1 2 0 1 0 1 0 1 3 0 0 0 0 1 1 0 0 0 0 0 14 1 1570.8427 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98 P21333 63 76 FLNA Filamin-A yes no 3 7.3933E-06 120.29 5 0.70735 0.94509 5.3336 2 Median 0.70735 0.94509 5.3336 2 0 Median NaN NaN NaN 0 0 Median 43314000 28259000 15055000 43314000 28259000 15055000 0 0 0 10054 1287 10321 35985;35986;35987;35988;35989 54157;54158;54159;54160;54161;54162;54163 54157 7 RICLDNDERK AKENIGKVNKKSNKKRICLDNDERKTNLMV KSNKKRICLDNDERKTNLMVNLGIPLGDPL K R I R K T 0 2 1 2 1 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 10 2 1317.6459 Q03188 Q03188 798 807 CENPC Centromere protein C yes yes 3 0.0040475 89.266 2 0.66308 0.79363 2.1791 2 Median 0.66308 0.79363 2.1791 2 0 Median NaN NaN NaN 0 0 Median 16497000 9386200 7110600 16497000 9386200 7110600 0 0 0 10055 1439 10322 35990;35991 54164;54165;54166 54165 3 RIEFAEQINK IEESQRKMNALFEGRRIEFAEQINKMEARP LFEGRRIEFAEQINKMEARPRRQSMKEKEH R R I N K M 1 1 1 0 0 1 2 0 0 2 0 1 0 1 0 0 0 0 0 0 0 0 10 1 1246.667 A8K964;Q9H307;B4DTD4 A8K964 271 280 PNN Pinin yes no 2 0.00026273 92.051 2 0.38578 0.50184 NaN 1 Median 0.38578 0.50184 NaN 1 0 Median NaN NaN NaN 0 0 Median 17008000 12906000 4101800 17008000 12906000 4101800 0 0 0 10056 644 10323 35992;35993 54167;54168 54168 2 RIEPAEELNSNDMK EPVVIMKRSLRTSAKRIEPAEELNSNDMKT KRIEPAEELNSNDMKTNKEEHKLQDSVPEN K R I M K T 1 1 2 1 0 0 3 0 0 1 1 1 1 0 1 1 0 0 0 0 0 0 14 1 1644.7777 P46013 P46013 3058 3071 MKI67 Antigen KI-67 yes yes 2;3 8.3487E-14 162.31 10 4 0.87663 1.3887 17.983 9 Plateau 0.87663 1.1777 19.323 5 0 Median 0.86635 1.4055 4.3341 4 0 Median 117570000 60348000 57223000 49967000 25507000 24460000 67603000 34841000 32763000 10057 1342 10324;10325 35994;35995;35996;35997;35998;35999;36000;36001;36002;36003;36004;36005;36006;36007 54169;54170;54171;54172;54173;54174;54175;54176;54177;54178;54179;54180;54181;54182;54183;54184;54185;54186 54170 575 17 RIEPLSPELVAAASAVADSLPFDK TLGRLRRATEYAPKKRIEPLSPELVAAASA VAAASAVADSLPFDKQTTKSELLSQLQQHE K R I D K Q 5 1 0 2 0 0 2 0 0 1 3 1 0 1 3 3 0 0 0 2 0 0 24 1 2495.3272 Q92665 Q92665 147 170 MRPS31 28S ribosomal protein S31, mitochondrial yes yes 3 0.046959 24.644 1 0.64483 0.83814 NaN 1 Median 0.64483 0.83814 NaN 1 0 Median NaN NaN NaN 0 0 Median 10605000 6506000 4099200 10605000 6506000 4099200 0 0 0 10058 1674 10326 36008 54187 54187 0 RIEVNVELRK RFKNKGKDSTEMRRRRIEVNVELRKAKKDD EMRRRRIEVNVELRKAKKDDQMLKRRNVSS R R I R K A 0 2 1 0 0 0 2 0 0 1 1 1 0 0 0 0 0 0 0 2 0 0 10 2 1254.7408 Q7Z726;A8K7D9;P52292;J3QLL0;J3KS65 Q7Z726 31 40 KPNA2 Importin subunit alpha;Importin subunit alpha-1 yes no 3 0.035225 36.447 1 0.51379 0.6164 NaN 1 Median 0.51379 0.6164 NaN 1 0 Median NaN NaN NaN 0 0 Median 10591000 7306100 3284900 10591000 7306100 3284900 0 0 0 10059 633 10327 36009 54188 54188 1 RIFLIDCPGVVYPSEDSETDIVLK IAGETKVWQYITLMRRIFLIDCPGVVYPSE VVYPSEDSETDIVLKGVVQVEKIKSPEDHI R R I L K G 0 1 0 3 1 0 2 1 0 3 2 1 0 1 2 2 1 0 1 3 0 0 24 1 2764.3993 Q5T0F3;Q13823;H0YG10 Q5T0F3 356 379 GNL2 Nucleolar GTP-binding protein 2 yes no 3 3.4872E-09 67.413 2 0.74698 0.99067 4.4049 2 Median 0.74698 0.99067 4.4049 2 0 Median NaN NaN NaN 0 0 Median 15085000 9330300 5754600 15085000 9330300 5754600 0 0 0 10060 1477 10328 36010;36011 54189;54190 54190 2 RIFTGSDDCLVK HLSSVYCVTFDRTGRRIFTGSDDCLVKIWA TGRRIFTGSDDCLVKIWATDDGRLLATLRG R R I V K I 0 1 0 2 1 0 0 1 0 1 1 1 0 1 0 1 1 0 0 1 0 0 12 1 1409.6973 Q8WWQ0 Q8WWQ0 197 208 PHIP PH-interacting protein no no 2 0.031881 67.214 1 0.90955 1.2121 NaN 1 Median 0.90955 1.2121 NaN 1 0 Median NaN NaN NaN 0 0 Median 12543000 6296400 6246900 12543000 6296400 6246900 0 0 0 10061 1668 10329 36012 54191;54192 54191 2 RIGVPSATEIIK YQLVQVEQKAGIKFKRIGVPSATEIIKASS KFKRIGVPSATEIIKASSKDAIRLLDSVPP K R I I K A 1 1 0 0 0 0 1 1 0 3 0 1 0 0 1 1 1 0 0 1 0 0 12 1 1282.7609 Q9NR30 Q9NR30 562 573 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 0.0011899 94.692 5 1 0.5998 0.7956 11.922 6 Median 0.59304 0.78486 5.9849 5 0 Median 0.60663 1.0084 NaN 1 0 Median 132690000 79667000 53025000 99122000 59231000 39891000 33570000 20436000 13134000 10062 1756 10330 36013;36014;36015;36016;36017;36018 54193;54194;54195;54196;54197;54198;54199;54200;54201 54201 9 RIHGVGFK INEVVTREYTINIHKRIHGVGFKKRAPRAL YTINIHKRIHGVGFKKRAPRALKEIRKFAM K R I F K K 0 1 0 0 0 0 0 2 1 1 0 1 0 1 0 0 0 0 0 1 0 0 8 1 912.52937 H7C2W9;C9JU56;B7Z4E3;B2R4C1;B7Z4C8;P62899;B8ZZK4 H7C2W9 20 27 RPL31 60S ribosomal protein L31 yes no 2;3 0.00021942 122.18 9 1 0.85994 1.138 8.8848 7 Median 0.85994 1.138 8.8848 7 0 Median NaN NaN NaN 0 0 Median 918390000 477620000 440780000 916050000 475270000 440780000 2343000 2343000 0 10063 682 10331 36019;36020;36021;36022;36023;36024;36025;36026;36027;36028 54202;54203;54204;54205;54206;54207;54208;54209;54210;54211;54212;54213;54214;54215;54216;54217;54218;54219;54220;54221 54206 20 RIHGVGFKK INEVVTREYTINIHKRIHGVGFKKRAPRAL TINIHKRIHGVGFKKRAPRALKEIRKFAMK K R I K K R 0 1 0 0 0 0 0 2 1 1 0 2 0 1 0 0 0 0 0 1 0 0 9 2 1040.6243 H7C2W9;C9JU56;B7Z4E3;B2R4C1;B7Z4C8;P62899;B8ZZK4 H7C2W9 20 28 RPL31 60S ribosomal protein L31 yes no 3 0.0050568 76.1 3 0.86479 1.0905 4.2068 3 Median 0.86479 1.0905 4.2068 3 0 Median NaN NaN NaN 0 0 Median 88447000 46209000 42238000 88447000 46209000 42238000 0 0 0 10064 682 10332 36029;36030;36031 54222;54223;54224;54225;54226 54225 5 RIHISQEDNVANK FIFSPANRRRGRPPKRIHISQEDNVANKQT PKRIHISQEDNVANKQTLASYRSKATKERD K R I N K Q 1 1 2 1 0 1 1 0 1 2 0 1 0 0 0 1 0 0 0 1 0 0 13 1 1522.7852 D3DS96;Q9NRL2;Q05CW0;Q32ND1 D3DS96 282 294 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 3 1.7651E-10 109 3 0.43944 0.56667 9.9734 2 Median 0.43944 0.56667 9.9734 2 0 Median NaN NaN NaN 0 0 Median 21484000 15397000 6087800 21484000 15397000 6087800 0 0 0 10065 979 10333 36032;36033;36034 54227;54228;54229 54228 3 RILELDQFK KNIYVLQELDNPGAKRILELDQFKGQQGQK DNPGAKRILELDQFKGQQGQKRFQDMMGHG K R I F K G 0 1 0 1 0 1 1 0 0 1 2 1 0 1 0 0 0 0 0 0 0 0 9 1 1160.6554 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32 A0A024R1N4 115 123 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.0040921 104.01 2 2 0.60095 0.89965 25.616 4 Median 0.55415 0.72989 0.65883 2 0 Median 0.65289 1.1354 3.9981 2 0 Median 370930000 231940000 138990000 172330000 107950000 64378000 198600000 123990000 74612000 10066 62 10334 36035;36036;36037;36038 54230;54231;54232;54233;54234;54235;54236 54231 7 RILELSGSSSEDSEK SEPACLAEIEEDKARRILELSGSSSEDSEK RILELSGSSSEDSEKVIAGLYQRAFQHLSE R R I E K V 0 1 0 1 0 0 3 1 0 1 2 1 0 0 0 5 0 0 0 0 0 0 15 1 1635.7952 P78527 P78527 3358 3372 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.040691 84.821 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10067 1427 10335 36039 54237 54237 1 RILEPDDFLDDLDDEDYEEDTPK DSLGEFPVTNSRARKRILEPDDFLDDLDDE LDDLDDEDYEEDTPKRRGKGKSKGKGVGSA K R I P K R 0 1 0 8 0 0 4 0 0 1 3 1 0 1 2 0 1 0 1 0 0 0 23 1 2796.2138 A0A024R582;J3KMZ8;Q92785 A0A024R582 156 178 DPF2 Zinc finger protein ubi-d4 yes no 3 0.033111 12.08 1 1.2052 1.5531 NaN 1 Median 1.2052 1.5531 NaN 1 0 Median NaN NaN NaN 0 0 Median 5082300 2468600 2613600 5082300 2468600 2613600 0 0 0 10068 137 10336 36040 54238 54238 1 RILGLLENF IGDGRSPEFRENEQKRILGLLENF______ RENEQKRILGLLENF_______________ K R I N F - 0 1 1 0 0 0 1 1 0 1 3 0 0 1 0 0 0 0 0 0 0 0 9 1 1073.6233 A0A087WUB9;Q8WYA6 A0A087WUB9 560 568 CTNNBL1 Beta-catenin-like protein 1 yes no 2 0.005182 75.854 2 0.60156 0.79657 NaN 1 Median 0.60156 0.79657 NaN 1 0 Median NaN NaN NaN 0 0 Median 2541800 2065500 476320 2541800 2065500 476320 0 0 0 10069 342 10337 36041;36042 54239;54240 54240 2 RILKPQLK SSVSSSAASSPERKKRILKPQLKSESSTSA SSPERKKRILKPQLKSESSTSAFSTPTRSI K R I L K S 0 1 0 0 0 1 0 0 0 1 2 2 0 0 1 0 0 0 0 0 0 0 8 2 994.66514 Q8WWQ0 Q8WWQ0 1463 1470 PHIP PH-interacting protein yes yes 3 0.016383 74.255 1 0.8697 1.097 NaN 1 Median 0.8697 1.097 NaN 1 0 Median NaN NaN NaN 0 0 Median 14800000 7047900 7752300 14800000 7047900 7752300 0 0 0 10070 1668 10338 36043 54241 54241 1 RILPKPTR EKKFSGKHVVFIAQRRILPKPTRKSRTKNK VVFIAQRRILPKPTRKSRTKNKQKRPRSRT R R I T R K 0 2 0 0 0 0 0 0 0 1 1 1 0 0 2 0 1 0 0 0 0 0 8 2 979.62908 P62081;B5MCP9 P62081 99 106 RPS7 40S ribosomal protein S7 yes no 3 0.00035724 124.08 4 0.76078 0.95104 5.7836 4 Median 0.76078 0.95104 5.7836 4 0 Median NaN NaN NaN 0 0 Median 139100000 79211000 59892000 139100000 79211000 59892000 0 0 0 10071 1395 10339 36044;36045;36046;36047 54242;54243;54244;54245;54246;54247;54248 54242 7 RILPKPTRK EKKFSGKHVVFIAQRRILPKPTRKSRTKNK VFIAQRRILPKPTRKSRTKNKQKRPRSRTL R R I R K S 0 2 0 0 0 0 0 0 0 1 1 2 0 0 2 0 1 0 0 0 0 0 9 3 1107.724 P62081;B5MCP9 P62081 99 107 RPS7 40S ribosomal protein S7 yes no 3 0.0043967 74.533 4 0.796 0.87571 6.7416 4 Median 0.796 0.87571 6.7416 4 0 Median NaN NaN NaN 0 0 Median 103380000 53560000 49819000 103380000 53560000 49819000 0 0 0 10072 1395 10340 36048;36049;36050;36051 54249;54250;54251;54252;54253 54251 5 RINPPLAK PSDPGKSKGTSHKRKRINPPLAKPKKGYSG GTSHKRKRINPPLAKPKKGYSGKPSSGGDR K R I A K P 1 1 1 0 0 0 0 0 0 1 1 1 0 0 2 0 0 0 0 0 0 0 8 1 907.56034 A0A0B4J291;Q8N8U2 A0A0B4J291 108 115 CDYL2 Chromodomain Y-like protein 2 yes no 2 0.021423 76.134 1 1 1.1388 1.6221 3.344 2 Median 1.2669 1.6609 NaN 1 0 Median 1.0236 1.5842 NaN 1 0 Median 31327000 14971000 16356000 22520000 10877000 11643000 8806600 4093900 4712600 10073 417 10341 36052;36053 54254;54255;54256 54255 2 RINVELSTK KAAIAQLNGKEVKGKRINVELSTKGQKKGP KEVKGKRINVELSTKGQKKGPGLAVQSGDK K R I T K G 0 1 1 0 0 0 1 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 9 1 1058.6084 A0A0S2Z4Z0;Q96PK6;Q59GV2;A0A0S2Z567 A0A0S2Z4Z0 141 149 RBM14 RNA-binding protein 14 yes no 2 0.00010262 104.2 3 2 0.69651 1.0096 86.851 4 Median 0.33677 0.44859 19.618 2 0 Median 1.2594 1.9933 1.1081 2 0 Median 67176000 46261000 20915000 41369000 34702000 6666800 25807000 11559000 14248000 10074 472 10342 36054;36055;36056;36057;36058 54257;54258;54259;54260;54261;54262;54263 54259 7 RIPADTFAALK ALHAAVIAINEAIDRRIPADTFAALKNPNA AIDRRIPADTFAALKNPNAMLVNLEEPLAS R R I L K N 3 1 0 1 0 0 0 0 0 1 1 1 0 1 1 0 1 0 0 0 0 0 11 1 1201.6819 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;Q6P1N4;Q5FWG8;Q05DN7 A4QPB0 231 241 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.019327 75.652 1 0.48529 0.64591 NaN 1 Median 0.48529 0.64591 NaN 1 0 Median NaN NaN NaN 0 0 Median 2066100 1171500 894610 2066100 1171500 894610 0 0 0 10075 287 10343 36059 54264 54264 1 RIQDIVGILR MEQDAQAPDLQRVHKRIQDIVGILRDFGAQ QRVHKRIQDIVGILRDFGAQREEGRSRSEY K R I L R D 0 2 0 1 0 1 0 1 0 3 1 0 0 0 0 0 0 0 0 1 0 0 10 1 1181.7244 P46087;F5H5X6;F5GYR3 P46087 242 251 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2;3 0.014404 75.509 2 2 0.58399 0.81 6.9396 3 Median 0.62189 0.84632 6.2045 2 0 Median 0.48813 0.77106 NaN 1 0 Median 69618000 42297000 27322000 35975000 21686000 14289000 33643000 20611000 13032000 10076 1343 10344 36060;36061;36062;36063 54265;54266;54267;54268 54266 4 RIQDPTEDAEAEDTPR EDSGNVNGKKRNHTKRIQDPTEDAEAEDTP IQDPTEDAEAEDTPRKRLRTDKHSLRKRDT K R I P R K 2 2 0 3 0 1 3 0 0 1 0 0 0 0 2 0 2 0 0 0 0 0 16 1 1841.8391 O96028;Q05CW4;H0Y9L4 O96028 531 546 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 3 0.013794 24.714 1 0.66352 0.8848 NaN 1 Median NaN NaN NaN 0 0 Median 0.66352 0.8848 NaN 1 0 Median 3937400 2450000 1487400 0 0 0 3937400 2450000 1487400 10077 1228 10345 36064 54269 54269 1 RIQDPTEDAEAEDTPRK EDSGNVNGKKRNHTKRIQDPTEDAEAEDTP QDPTEDAEAEDTPRKRLRTDKHSLRKRDTI K R I R K R 2 2 0 3 0 1 3 0 0 1 0 1 0 0 2 0 2 0 0 0 0 0 17 2 1969.9341 O96028;Q05CW4;H0Y9L4 O96028 531 547 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 3 2.3322E-25 168.16 4 2 0.9621 1.19 25.123 6 Median 0.90256 1.0996 7.6446 4 0 Median 1.1366 1.8174 3.9175 2 0 Median 74868000 37917000 36951000 59936000 30718000 29219000 14932000 7199500 7732200 10078 1228 10346 36065;36066;36067;36068;36069;36070 54270;54271;54272;54273;54274;54275;54276;54277;54278;54279;54280 54273 11 RIQLVEEELDRAQER RAREQAEAEVASLNRRIQLVEEELDRAQER RIQLVEEELDRAQERLATALQKLEEAEKAA R R I E R L 1 3 0 1 0 2 4 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 15 2 1882.9861 Q5HYB6;B2RDE1;A0A0S2Z4I4;A0A0S2Z4G8;A0A0S2Z4G4;A0A087WWU8;D6R904;J3KN67;M1VPF4;P06753;H0YL80;K7EP68;H0YKX5;H0YKP3;B4DTK3;Q8TCG4;C9IZA2;H0YNC7;Q15657;H0YL52;D9YZV5;D9YZV4;A0A0S2Z4G6;A0A0K0K1I0;A0A024R5W6;Q6ZN40;P09493;B4DVY2;V9HW56;P67936;B4DTB1;V9HW25;Q5TCU3;CON__Q3SX28;A7XZE4;Q5TCU8;P07951;K7ERG3;K7ENT6;B4DGC2;Q1ZYL5;F5H7S3;D9YZV7;H7BYY1;H0YK48;B7Z722;B7Z596;Q59GR8 Q5HYB6 55 69 DKFZp686J1372;TPM3;TPM3-ROS1;TPM1;TPM4;HEL-S-108;HEL-S-273;TPM2;TPM2b Tyrosine-protein kinase receptor;Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain;Tropomyosin beta chain no no 3 0.0048803 71.529 2 0.93284 1.1382 2.7019 2 Median 0.93284 1.1382 2.7019 2 0 Median NaN NaN NaN 0 0 Median 10865000 6108300 4756700 10865000 6108300 4756700 0 0 0 + 10079 465;864;912 10347 36071;36072 54281;54282 54282 2 RISAVSVAER NDRAAECNIVVTQPRRISAVSVAERVAFER VTQPRRISAVSVAERVAFERGEEPGKSCGY R R I E R V 2 2 0 0 0 0 1 0 0 1 0 0 0 0 0 2 0 0 0 2 0 0 10 1 1086.6146 Q08211;Q58F26;Q6PJK6 Q08211 447 456 DHX9 ATP-dependent RNA helicase A yes no 2;3 1.9904E-05 112.85 4 3 0.63545 0.86341 7.9069 6 Median 0.64409 0.88641 4.5757 4 0 Median 0.48518 0.77985 2.7695 2 0 Median 695440000 429050000 266400000 525470000 316830000 208640000 169980000 112220000 57756000 10080 1448 10348 36073;36074;36075;36076;36077;36078;36079 54283;54284;54285;54286;54287;54288;54289;54290;54291 54288 9 RISEQFTAMFR VTFIGNSTAIQELFKRISEQFTAMFRRKAF ELFKRISEQFTAMFRRKAFLHWYTGEGMDE K R I F R R 1 2 0 0 0 1 1 0 0 1 0 0 1 2 0 1 1 0 0 0 0 0 11 1 1384.6922 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;B4DMU8;Q96B85;B4DXZ5;B4DMJ5;Q6P602;A4UCU2;Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;Q96HX0;B4DFH6;Q9BVA1;Q13885;A0A024QZU2;B2R6L0;O43209;B7Z4N1;P04350;B4DJ43;B4DE77;Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q53G92 Q5JP53 362 372 TUBB;TUBB2C;TUBB4B;TUBB2B;TUBB2A;TUBB4A;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain;Tubulin beta-3 chain no no 3 0.00093656 55.98 1 3.4659 4.9054 NaN 1 Median NaN NaN NaN 0 0 Median 3.4659 4.9054 NaN 1 0 Median 9675000 2610000 7065000 0 0 0 9675000 2610000 7065000 10081 1241;1423;1230;1479;416 10349 36080 54292 54292 137 1 RISGLIYEETR TKPAIRRLARRGGVKRISGLIYEETRGVLK GGVKRISGLIYEETRGVLKVFLENVIRDAV K R I T R G 0 2 0 0 0 0 2 1 0 2 1 0 0 0 0 1 1 0 1 0 0 0 11 1 1335.7147 B2R4R0;P62805;Q0VAS5;Q6B823 B2R4R0 46 56 HIST1H4H;HIST1H4A Histone H4 yes no 2;3 8.7475E-23 175.49 214 12 0.65871 3.5206 22.682 90 Linear 0.6648 0.89841 22.644 83 0 Median 0.5964 1.0586 20.949 7 0 Median 43162000000 27723000000 15439000000 32653000000 21291000000 11362000000 10509000000 6432400000 4077000000 10082 686 10350 36081;36082;36083;36084;36085;36086;36087;36088;36089;36090;36091;36092;36093;36094;36095;36096;36097;36098;36099;36100;36101;36102;36103;36104;36105;36106;36107;36108;36109;36110;36111;36112;36113;36114;36115;36116;36117;36118;36119;36120;36121;36122;36123;36124;36125;36126;36127;36128;36129;36130;36131;36132;36133;36134;36135;36136;36137;36138;36139;36140;36141;36142;36143;36144;36145;36146;36147;36148;36149;36150;36151;36152;36153;36154;36155;36156;36157;36158;36159;36160;36161;36162;36163;36164;36165;36166;36167;36168;36169;36170;36171;36172;36173;36174;36175;36176;36177;36178;36179;36180;36181;36182;36183;36184;36185;36186;36187;36188;36189;36190;36191;36192;36193;36194;36195;36196;36197;36198;36199;36200;36201;36202;36203;36204;36205;36206;36207;36208;36209;36210;36211;36212;36213;36214;36215;36216;36217;36218;36219;36220;36221;36222;36223;36224;36225;36226;36227;36228;36229;36230;36231;36232;36233;36234;36235;36236;36237;36238;36239;36240;36241;36242;36243;36244;36245;36246;36247;36248;36249;36250;36251;36252;36253;36254;36255;36256;36257;36258;36259;36260;36261;36262;36263;36264;36265;36266;36267;36268;36269;36270;36271;36272;36273;36274;36275;36276;36277;36278;36279;36280;36281;36282;36283;36284;36285;36286;36287;36288;36289;36290;36291;36292;36293;36294;36295;36296;36297;36298;36299;36300;36301;36302;36303;36304;36305;36306 54293;54294;54295;54296;54297;54298;54299;54300;54301;54302;54303;54304;54305;54306;54307;54308;54309;54310;54311;54312;54313;54314;54315;54316;54317;54318;54319;54320;54321;54322;54323;54324;54325;54326;54327;54328;54329;54330;54331;54332;54333;54334;54335;54336;54337;54338;54339;54340;54341;54342;54343;54344;54345;54346;54347;54348;54349;54350;54351;54352;54353;54354;54355;54356;54357;54358;54359;54360;54361;54362;54363;54364;54365;54366;54367;54368;54369;54370;54371;54372;54373;54374;54375;54376;54377;54378;54379;54380;54381;54382;54383;54384;54385;54386;54387;54388;54389;54390;54391;54392;54393;54394;54395;54396;54397;54398;54399;54400;54401;54402;54403;54404;54405;54406;54407;54408;54409;54410;54411;54412;54413;54414;54415;54416;54417;54418;54419;54420;54421;54422;54423;54424;54425;54426;54427;54428;54429;54430;54431;54432;54433;54434;54435;54436;54437;54438;54439;54440;54441;54442;54443;54444;54445;54446;54447;54448;54449;54450;54451;54452;54453;54454;54455;54456;54457;54458;54459;54460;54461;54462;54463;54464;54465;54466;54467;54468;54469;54470;54471;54472;54473;54474;54475;54476;54477;54478;54479;54480;54481;54482;54483;54484;54485;54486;54487;54488;54489;54490;54491;54492;54493;54494;54495;54496;54497;54498;54499;54500;54501;54502;54503;54504;54505;54506;54507;54508;54509;54510;54511;54512;54513;54514;54515;54516;54517;54518;54519;54520;54521;54522;54523;54524;54525;54526;54527;54528;54529;54530;54531;54532;54533;54534;54535;54536;54537;54538;54539;54540;54541;54542;54543;54544;54545;54546;54547;54548;54549;54550;54551;54552;54553;54554;54555;54556;54557;54558;54559;54560;54561;54562;54563;54564;54565;54566;54567;54568;54569;54570;54571;54572;54573;54574;54575;54576;54577;54578;54579;54580;54581;54582;54583;54584;54585;54586;54587;54588;54589;54590;54591;54592;54593;54594;54595;54596;54597;54598;54599;54600;54601;54602;54603;54604;54605;54606;54607;54608;54609;54610;54611;54612;54613;54614;54615;54616;54617;54618;54619;54620;54621;54622;54623;54624;54625;54626;54627;54628;54629;54630;54631;54632;54633;54634;54635;54636;54637;54638;54639;54640;54641;54642;54643;54644;54645;54646;54647 54419 352 RISGLIYEETRGVLK TKPAIRRLARRGGVKRISGLIYEETRGVLK RISGLIYEETRGVLKVFLENVIRDAVTYTE K R I L K V 0 2 0 0 0 0 2 2 0 2 2 1 0 0 0 1 1 0 1 1 0 0 15 2 1732.9836 B2R4R0;P62805;Q0VAS5;Q6B823 B2R4R0 46 60 HIST1H4H;HIST1H4A Histone H4 yes no 3 1.7201E-22 178.68 5 2 0.66308 0.87901 22.612 6 Median 0.66308 0.80521 9.0399 4 0 Median 0.65526 1.2676 4.3171 2 0 Median 1732100000 1012000000 720140000 1304600000 749650000 554930000 427560000 262350000 165210000 10083 686 10351 36307;36308;36309;36310;36311;36312;36313 54648;54649;54650;54651;54652;54653;54654;54655;54656;54657;54658;54659;54660;54661;54662;54663 54652 16 RISIGGGSCAISGGYGSR AGFGSRSLYGLGGSKRISIGGGSCAISGGY IGGGSCAISGGYGSRAGGSYGFGGPGFPVC K R I S R A 1 2 0 0 1 0 0 6 0 3 0 0 0 0 0 4 0 0 1 0 0 0 18 1 1753.853 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;B4DRY0;A0A0S2Z427;CON__P04259;B4DKV4 B4DRR0 69 86 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 3 0.046606 13.872 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3635100 3635100 0 0 0 0 3635100 3635100 0 + 10084 459;953 10352 36314 54664 54664 1 RISTITALGHEGK EFLKDEIKQEEETCKRISTITALGHEGKQL CKRISTITALGHEGKQLVNGEVSDERVAPN K R I G K Q 1 1 0 0 0 0 1 2 1 2 1 1 0 0 0 1 2 0 0 0 0 0 13 1 1381.7678 Q96T23;H0YER1;H0YCN2 Q96T23 427 439 RSF1 Remodeling and spacing factor 1 yes no 3 0.0036608 58.626 2 1 0.7907 1.0958 27.515 2 Median 0.69423 0.90207 NaN 1 0 Median 0.90059 1.3312 NaN 1 0 Median 22213000 12528000 9685100 18175000 10744000 7430800 4038300 1783900 2254300 10085 1702 10353 36315;36316;36317 54665;54666;54667 54667 3 RITADQALK AKNLINQMLTINPAKRITADQALKHPWVCQ TINPAKRITADQALKHPWVCQRSTVASMMH K R I L K H 2 1 0 1 0 1 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 9 1 1014.5822 Q5SWX3;A8K6N9;A0A0A0MS52;A0A0A0MT11;Q13555;Q8WU40;B3KY86;H0Y6G2;B3KTH7 Q5SWX3 260 268 CAMK2G Calcium/calmodulin-dependent protein kinase type II subunit gamma yes no 2 0.020058 86.136 1 0.34066 0.46413 NaN 1 Median 0.34066 0.46413 NaN 1 0 Median NaN NaN NaN 0 0 Median 3025200 2080000 945240 3025200 2080000 945240 0 0 0 10086 393 10354 36318 54668 54668 1 RITNEQEETYSLSQSSGK EQGDRENVLCNKKEKRITNEQEETYSLSQS NEQEETYSLSQSSGKFHQESKFDKGQNSLT K R I G K F 0 1 1 0 0 2 3 1 0 1 1 1 0 0 0 4 2 0 1 0 0 0 18 1 2055.9709 Q562F6;B7Z7S9 Q562F6 495 512 SGOL2 Shugoshin-like 2 yes no 2;3 2.2366E-24 145.71 5 2 0.89228 1.1943 15.652 6 Median 0.87541 1.1782 7.6455 4 0 Median 0.96415 1.4828 11.824 2 0 Median 52067000 28242000 23825000 39830000 22257000 17572000 12237000 5984800 6252200 10087 1546 10355 36319;36320;36321;36322;36323;36324;36325 54669;54670;54671;54672;54673;54674;54675;54676;54677;54678;54679;54680 54670 11 RITRPGNTDDPSGGNK YIAGQQAFFNYSTSKRITRPGNTDDPSGGN ITRPGNTDDPSGGNKVLLLSIQNPLYPITV K R I N K V 0 2 2 2 0 0 0 3 0 1 0 1 0 0 2 1 2 0 0 0 0 0 16 2 1683.8289 B7WPG3;C9IYN3;A8K894;D6W592;A0A0S2Z6K1;A0A0S2Z5U3;Q8WVV9;A0A0S2Z610;C9JJZ7;H7BXH8 B7WPG3 152 167 HNRNPLL;HNRPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 3 0.023938 54.276 1 0.35452 0.37926 NaN 1 Median 0.35452 0.37926 NaN 1 0 Median NaN NaN NaN 0 0 Median 633890 373980 259910 633890 373980 259910 0 0 0 10088 483 10356 36326 54681 54681 1 RKAEEDAALQAK DIYTHWQQTSELGRKRKAEEDAALQAKKTR GRKRKAEEDAALQAKKTRVSDPISTSESSE K R K A K K 4 1 0 1 0 1 2 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 12 2 1328.7048 E7ETY2;B4DLB1;H0YA99;J3KQ96;Q13428 E7ETY2 63 74 TCOF1 Treacle protein no no 2;3 1.4493E-06 96.89 2 0.75625 0.90688 18.861 2 Median 0.75625 0.90688 18.861 2 0 Median NaN NaN NaN 0 0 Median 36335000 22744000 13591000 36335000 22744000 13591000 0 0 0 10089 1016;1135;1469 10357 36327;36328 54682;54683 54682 2 RKGDEVDGVDEVAK EALKKQLPGVKSEGKRKGDEVDGVDEVAKK KRKGDEVDGVDEVAKKKSKKEKDKDSKLEK K R K A K K 1 1 0 3 0 0 2 2 0 0 0 2 0 0 0 0 0 0 0 3 0 0 14 2 1515.7529 A0A024R3T8;P09874;B4E0E1;B2R5W3;Q05D33;Q6PJL0;Q96P95 A0A024R3T8 208 221 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2;3 2.3457E-21 143.42 7 4 0.91238 1.0799 36.3 11 Median 0.98412 1.186 11.478 7 0 Median 0.35301 0.59187 7.3889 4 0 Median 1079300000 552270000 527060000 1031000000 517510000 513470000 48347000 34757000 13590000 10090 107 10358 36329;36330;36331;36332;36333;36334;36335;36336;36337;36338;36339 54684;54685;54686;54687;54688;54689;54690;54691;54692;54693;54694;54695;54696;54697 54690 14 RKGDEVDGVDEVAKK EALKKQLPGVKSEGKRKGDEVDGVDEVAKK RKGDEVDGVDEVAKKKSKKEKDKDSKLEKA K R K K K K 1 1 0 3 0 0 2 2 0 0 0 3 0 0 0 0 0 0 0 3 0 0 15 3 1643.8479 A0A024R3T8;P09874;B4E0E1;B2R5W3;Q05D33;Q6PJL0;Q96P95 A0A024R3T8 208 222 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2;3 2.0878E-06 120.29 3 1.1369 1.3823 28.968 3 Plateau 1.1369 1.3823 28.968 3 0 Plateau NaN NaN NaN 0 0 Median 18562000 8272300 10290000 18562000 8272300 10290000 0 0 0 10091 107 10359 36340;36341;36342 54698;54699;54700 54699 2 RKGPELPLVPVK ______________________________ QQKRKGPELPLVPVKRQRHELLLGAGSGPG K R K V K R 0 1 0 0 0 0 1 1 0 0 2 2 0 0 3 0 0 0 0 2 0 0 12 2 1331.8289 B2R9I9;A0MNP2;Q96DI7 B2R9I9 7 18 WDR57;SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 3 0.022025 34.96 1 0.66317 0.78627 NaN 1 Median 0.66317 0.78627 NaN 1 0 Median NaN NaN NaN 0 0 Median 9878900 5171100 4707700 9878900 5171100 4707700 0 0 0 10092 530 10360 36343 54701 54701 1 RKIEQVDKEDEITEK YDPSGDSTLPTCSKKRKIEQVDKEDEITEK RKIEQVDKEDEITEKKAKKAKIKVKVEEEE K R K E K K 0 1 0 2 0 1 4 0 0 2 0 3 0 0 0 0 1 0 0 1 0 0 15 3 1858.9636 Q9Y2X3;B3KN82 Q9Y2X3 443 457 NOP58 Nucleolar protein 58 yes no 2;3;4 1.53E-07 106.82 6 0.63501 0.8258 23.284 6 Median 0.63501 0.8258 23.284 6 0 Median NaN NaN NaN 0 0 Median 129640000 78761000 50877000 129640000 78761000 50877000 0 0 0 10093 1810 10361 36344;36345;36346;36347;36348;36349 54702;54703;54704;54705;54706;54707;54708;54709;54710;54711 54709 9 RKLDAEDVIGSR VGEGKGTKAFKQPAKRKLDAEDVIGSRRQP PAKRKLDAEDVIGSRRQPRAPKEKAQPLED K R K S R R 1 2 0 2 0 0 1 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 12 2 1357.7314 P46013 P46013 2891 2902 MKI67 Antigen KI-67 yes yes 3 1.1836E-07 145.81 3 0.77432 0.98292 4.3764 3 Median 0.77432 0.98292 4.3764 3 0 Median NaN NaN NaN 0 0 Median 532090000 312240000 219850000 532090000 312240000 219850000 0 0 0 10094 1342 10362 36350;36351;36352 54712;54713;54714;54715;54716;54717 54715 6 RKLDLNQEEK AIGSTSKPQESPKGKRKLDLNQEEKKTPSK SPKGKRKLDLNQEEKKTPSKPPAQLSPSVP K R K E K K 0 1 1 1 0 1 2 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 10 2 1271.6834 A0A024R0S8;Q59HH7;P18887;F5H8D7;B4DEB2;B2RCY5;B4DTD3;M0QYS5 A0A024R0S8 246 255 XRCC1 DNA repair protein XRCC1 yes no 3 0.01349 74.962 2 0.76741 0.93546 27.221 2 Median 0.76741 0.93546 27.221 2 0 Median NaN NaN NaN 0 0 Median 13600000 7126800 6473600 13600000 7126800 6473600 0 0 0 10095 42 10363 36353;36354 54718;54719 54718 2 RKLEGDSTDLSDQIAELQAQIAELK LRREEKQRQELEKTRRKLEGDSTDLSDQIA SDQIAELQAQIAELKMQLAKKEEELQAALA R R K L K M 3 1 0 3 0 3 3 1 0 2 4 2 0 0 0 2 1 0 0 0 0 0 25 2 2770.4349 A0A024R1N1;P35579;Q86XU5;Q99529;A0A0U4BW16 A0A024R1N1 1051 1075 MYH9 Myosin-9 no no 4 2.0195E-07 83.436 2 0.9334 1.1368 49.96 2 Median 0.9334 1.1368 49.96 2 0 Median NaN NaN NaN 0 0 Median 9902400 5647600 4254800 9902400 5647600 4254800 0 0 0 10096 61;490 10364 36355;36356 54720;54721;54722 54720 3 RKLESLDALEPEEK SPNAEIHILKNKGRKRKLESLDALEPEEKA KRKLESLDALEPEEKAEDCWELQISPELLA K R K E K A 1 1 0 1 0 0 4 0 0 0 3 2 0 0 1 1 0 0 0 0 0 0 14 2 1655.873 Q14807;A0A024R632;B7Z9T5;Q14985;O60846 Q14807 558 571 KIF22;OBP-2;A-328A3.5 Kinesin-like protein KIF22;Kinesin-like protein yes no 3 0.0025334 83.823 2 0.73383 0.90796 52.342 2 Median 0.73383 0.90796 52.342 2 0 Median NaN NaN NaN 0 0 Median 39398000 18963000 20435000 39398000 18963000 20435000 0 0 0 10097 1497 10365 36357;36358 54723;54724 54723 2 RKLPSDVNEGK EEQEDKAVQVSNKKKRKLPSDVNEGKTVFI NKKKRKLPSDVNEGKTVFIRNLSFDSEEEE K R K G K T 0 1 1 1 0 0 1 1 0 0 1 2 0 0 1 1 0 0 0 1 0 0 11 2 1241.6728 A0A024R753;Q9NW13;B4DJ90;H7C5G8 A0A024R753 325 335 RBM28 RNA-binding protein 28 yes no 2;3 0.00046514 116.84 4 1.0692 1.2579 18.453 4 Median 1.0692 1.2579 18.453 4 0 Median NaN NaN NaN 0 0 Median 24432000 11201000 13231000 24432000 11201000 13231000 0 0 0 10098 169 10366 36359;36360;36361;36362 54725;54726;54727;54728;54729 54727 5 RKPDIVTPNGLNVK TVSQITAIEAQHLLKRKPDIVTPNGLNVKK KRKPDIVTPNGLNVKKFSAMHEFQNLHAQS K R K V K K 0 1 2 1 0 0 0 1 0 1 1 2 0 0 2 0 1 0 0 2 0 0 14 2 1549.894 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6 P13807 272 285 GYS1 Glycogen [starch] synthase, muscle yes no 3 0.038089 26.729 1 0.66402 0.78304 NaN 1 Median 0.66402 0.78304 NaN 1 0 Median NaN NaN NaN 0 0 Median 12549000 8343700 4205500 12549000 8343700 4205500 0 0 0 10099 1265 10367 36363 54730 54730 1 RKPSTSDDSDSNFEK VSQKPDPAKTKNRRKRKPSTSDDSDSNFEK RKPSTSDDSDSNFEKIVSKAVTSKKSKGES K R K E K I 0 1 1 3 0 0 1 0 0 0 0 2 0 1 1 4 1 0 0 0 0 0 15 2 1711.7649 P11388 P11388 1466 1480 TOP2A DNA topoisomerase 2-alpha yes yes 3 3.4567E-05 68.481 1 1 0.49825 0.70463 29.933 2 Median 0.70308 0.87074 NaN 1 0 Median 0.35309 0.57022 NaN 1 0 Median 49110000 28668000 20442000 46920000 27033000 19887000 2190000 1634800 555200 10100 1256 10368 36364;36365 54731;54732;54733 54732 3 RKPVLPALTINPTIAEGPSPTSEGASEANLVDLQK ______________________________ TSEGASEANLVDLQKKLEELELDEQQKKRL R R K Q K K 4 1 2 1 0 1 3 2 0 2 4 2 0 0 5 3 3 0 0 2 0 0 35 2 3612.9363 P36507 P36507 5 39 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 yes yes 4 2.248E-14 91.123 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28643000 28643000 0 28643000 28643000 0 0 0 0 10101 1324 10369 36366;36367;36368 54734;54735;54736 54736 3 RKQEELQQLEQQR EEARRRQHEAEEGVRRKQEELQQLEQQRRQ VRRKQEELQQLEQQRRQQEELLAEENQRLR R R K Q R R 0 2 0 0 0 5 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 13 2 1711.8965 Q15149;D3DWL0;H0YDN1 Q15149 2705 2717 PLEC;PLEC1 Plectin yes no 3 0.001227 92.151 3 0.92121 1.1362 2.6205 3 Median 0.92121 1.1362 2.6205 3 0 Median NaN NaN NaN 0 0 Median 26377000 12047000 14329000 26377000 12047000 14329000 0 0 0 10102 1507 10370 36369;36370;36371 54737;54738;54739;54740 54738 4 RKQELAETLANLER PQIPDTRRELAELVKRKQELAETLANLERQ KRKQELAETLANLERQIYAFEGSYLEDTQM K R K E R Q 2 2 1 0 0 1 3 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 14 2 1669.9111 Q9HAF1 Q9HAF1 25 38 MEAF6 Chromatin modification-related protein MEAF6 yes yes 3 6.8905E-07 130.95 4 0.76339 0.94751 11.302 4 Median 0.76339 0.94751 11.302 4 0 Median NaN NaN NaN 0 0 Median 69613000 37153000 32460000 69613000 37153000 32460000 0 0 0 10103 1748 10371 36372;36373;36374;36375 54741;54742;54743;54744;54745;54746 54742 5 RKYELGRPAANTK KRRKTGGKRKPYHKKRKYELGRPAANTKIG KKRKYELGRPAANTKIGPRRIHTVRVRGGN K R K T K I 2 2 1 0 0 0 1 1 0 0 1 2 0 0 1 0 1 0 1 0 0 0 13 3 1502.8318 Q5JR94;P62241;Q5JR95 Q5JR94 25 37 RPS8 40S ribosomal protein S8 yes no 4 0.0029025 78.903 1 0.63271 0.71045 NaN 1 Median 0.63271 0.71045 NaN 1 0 Median NaN NaN NaN 0 0 Median 5871900 3518000 2353900 5871900 3518000 2353900 0 0 0 10104 1399 10372 36376 54747 54747 1 RLAADFSVPLIIDIK GRRLSSFVTKGYRTRRLAADFSVPLIIDIK RLAADFSVPLIIDIKCTKLFVEALGQIGPA R R L I K C 2 1 0 2 0 0 0 0 0 3 2 1 0 1 1 1 0 0 0 1 0 0 15 1 1669.9767 Q53SY7;F8VPD4;P27708;H7C3Z5 Q53SY7 1343 1357 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 3 0.030902 55.097 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 467860 467860 0 467860 467860 0 0 0 0 10105 1060 10373 36377 54748 54748 1 RLAEDEAFQR EIALKEKEAENERLRRLAEDEAFQRRRLEE NERLRRLAEDEAFQRRRLEEQAAQHKADIE R R L Q R R 2 2 0 1 0 1 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 10 1 1233.6102 Q15149 Q15149 2005 2014 PLEC Plectin yes yes 2 0.0011471 101.38 3 0.85033 1.1521 0.77179 2 Median 0.85033 1.1521 0.77179 2 0 Median NaN NaN NaN 0 0 Median 25592000 10391000 15201000 25592000 10391000 15201000 0 0 0 10106 1507 10374 36378;36379;36380 54749;54750;54751;54752 54752 4 RLAETQEEISAEVAAK SFIADCDRRTEVAKKRLAETQEEISAEVAA LAETQEEISAEVAAKAERVHELNEEIGKLL K R L A K A 4 1 0 0 0 1 4 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 16 1 1743.9003 A0A0A6YYJ8;Q9Y383;B3KRR1;B3KSL5 A0A0A6YYJ8 173 188 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes no 3 0.00042042 42.149 1 0.70494 0.89571 NaN 1 Median 0.70494 0.89571 NaN 1 0 Median NaN NaN NaN 0 0 Median 8286200 4287100 3999100 8286200 4287100 3999100 0 0 0 10107 409 10375 36381 54753 54753 1 RLAQEPLGLEVDQFLEDVR RRRRRGPRNKKRGWRRLAQEPLGLEVDQFL EPLGLEVDQFLEDVRLQERTSGGLLSEAPN R R L V R L 1 2 0 2 0 2 3 1 0 0 4 0 0 1 1 0 0 0 0 2 0 0 19 1 2226.1644 Q7L4X7;Q96CS0;Q53YP0;B4E1N4;Q9NZM5;B4DVK1;B4DND9;B4E013 Q7L4X7 46 64 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes no 3 4.8723E-14 126.8 4 1.0794 1.426 30.72 3 Plateau 1.0794 1.426 30.72 3 0 Plateau NaN NaN NaN 0 0 Median 20369000 11865000 8504900 20369000 11865000 8504900 0 0 0 10108 887 10376 36382;36383;36384;36385 54754;54755;54756;54757 54756 4 RLAQETDIFK QEQIKEKKAAKEEEKRLAQETDIFKKKKRK KEEEKRLAQETDIFKKKKRKGQEDR_____ K R L F K K 1 1 0 1 0 1 1 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 10 1 1219.6561 Q5TBH9;Q8NDD1;Q5TBI2 Q5TBH9 230 239 C1orf131 Uncharacterized protein C1orf131 yes no 2 0.0039828 72.243 2 1 0.89298 1.1984 5.9024 3 Median 0.95258 1.2522 6.2113 2 0 Median 0.77662 1.1696 NaN 1 0 Median 19523000 9248200 10275000 11724000 5380200 6343500 7799700 3868000 3931700 10109 1574 10377 36386;36387;36388 54758;54759;54760;54761 54759 4 RLAQETDIFKK QEQIKEKKAAKEEEKRLAQETDIFKKKKRK EEEKRLAQETDIFKKKKRKGQEDR______ K R L K K K 1 1 0 1 0 1 1 0 0 1 1 2 0 1 0 0 1 0 0 0 0 0 11 2 1347.751 Q5TBH9;Q8NDD1;Q5TBI2 Q5TBH9 230 240 C1orf131 Uncharacterized protein C1orf131 yes no 3 0.0050764 84.352 3 0.94291 1.1126 18.465 3 Median 0.94291 1.1126 18.465 3 0 Median NaN NaN NaN 0 0 Median 48005000 25078000 22927000 48005000 25078000 22927000 0 0 0 10110 1574 10378 36389;36390;36391 54762;54763;54764 54762 3 RLASSVLR ______________________________ ______________________________ K R L L R C 1 2 0 0 0 0 0 0 0 0 2 0 0 0 0 2 0 0 0 1 0 0 8 1 900.5505 J3QR09;J3KTE4;Q53G49;P84098;J3QL15 J3QR09 6 13 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 2;3 0.0089727 115.49 4 1 0.84411 1.1681 30.942 5 Median 0.85891 1.1903 7.9643 4 0 Median 0.36468 0.60777 NaN 1 0 Median 2438100000 1347600000 1090500000 2342100000 1273600000 1068500000 95992000 74061000 21932000 10111 1138 10379 36392;36393;36394;36395;36396 54765;54766;54767;54768;54769;54770;54771 54770 7 RLASTSDIEEK SKGTRLAYVAPTIPRRLASTSDIEEKENRD TIPRRLASTSDIEEKENRDSSSLRTSSSYT R R L E K E 1 1 0 1 0 0 2 0 0 1 1 1 0 0 0 2 1 0 0 0 0 0 11 1 1247.6357 B2RAH5;O14974;F8VZN8;A0A024RBF1;H0YIS4;H0YHI8 B2RAH5 504 514 PPP1R12A Protein phosphatase 1 regulatory subunit;Protein phosphatase 1 regulatory subunit 12A yes no 2 0.00096221 90.108 3 1 1.1047 1.4262 47.14 3 Median 1.0538 1.3881 3.8233 2 0 Median 2.2137 3.1365 NaN 1 0 Median 16733000 7302200 9431300 13890000 6557600 7332500 2843400 744520 2098800 10112 723 10380 36397;36398;36399;36400 54772;54773;54774;54775;54776;54777 54774 6 RLCQFHR GSDGFVNIWDPFNKKRLCQFHRYPTS____ IWDPFNKKRLCQFHRYPTS___________ K R L H R Y 0 2 0 0 1 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 7 1 1015.5134 J3QT28;A0A140VJF3;O43684;B4DDM6 J3QT28 268 274 BUB3 Mitotic checkpoint protein BUB3 yes no 3 0.02724 52.636 1 0.2485 0.34623 NaN 1 Median 0.2485 0.34623 NaN 1 0 Median NaN NaN NaN 0 0 Median 3043700 2645200 398520 3043700 2645200 398520 0 0 0 10113 494 10381 36401 54778 54778 1 RLDADLAR QLAMQTYEMVDKHIRRLDADLARFEADLKD MVDKHIRRLDADLARFEADLKDKMEGSDFE R R L A R F 2 2 0 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 1 928.50903 E9PEN0;B7Z6R2;A0A1B0GW41;Q8WYH8 E9PEN0 99 106 ING5 Inhibitor of growth protein 5 yes no 2 0.010774 97.635 4 1 0.73883 0.99439 11.59 3 Median 0.80599 1.0986 14.091 2 0 Median 0.64457 0.99151 NaN 1 0 Median 67712000 33014000 34699000 47692000 20407000 27285000 20021000 12607000 7413400 10114 520 10382 36402;36403;36404;36405;36406 54779;54780;54781;54782;54783 54783 4 RLDELEEATK ASSRHLRFKLQSLSRRLDELEEATKNLQKA QSLSRRLDELEEATKNLQKAEDELLDLQDK R R L T K N 1 1 0 1 0 0 3 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 10 1 1202.6143 A0A024RAC0;Q86V48;E5RFK8;Q05DE3;E5RHU7 A0A024RAC0 26 35 LUZP1 Leucine zipper protein 1 yes no 2 7.1502E-05 105.98 3 1.2668 1.6996 35.591 3 Median 1.2668 1.6996 35.591 3 0 Median NaN NaN NaN 0 0 Median 26435000 10880000 15555000 26435000 10880000 15555000 0 0 0 10115 238 10383 36407;36408;36409 54784;54785;54786 54785 3 RLDLPIER PLLLEEQGVVDYFLRRLDLPIERQPRKMLM VVDYFLRRLDLPIERQPRKMLMKWKEMADR R R L E R Q 0 2 0 1 0 0 1 0 0 1 2 0 0 0 1 0 0 0 0 0 0 0 8 1 1010.5873 P17812;B4E1E0;B4DMB5;B7Z9C4 P17812 269 276 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.039655 78.334 1 0.22606 0.31263 NaN 1 Median 0.22606 0.31263 NaN 1 0 Median NaN NaN NaN 0 0 Median 6194700 4628600 1566100 6194700 4628600 1566100 0 0 0 10116 1278 10384 36410 54787 54787 1 RLDLSHLR VRDMEDLLRLKDYQRRLDLSHLRQSSDPML RLKDYQRRLDLSHLRQSSDPMLSEFKNLDI R R L L R Q 0 2 0 1 0 0 0 0 1 0 3 0 0 0 0 1 0 0 0 0 0 0 8 1 1008.5829 M0R2C7;M0QYC1;A0A024R0R1;M0QZR4;Q92888 M0R2C7 76 83 ARHGEF1 Rho guanine nucleotide exchange factor 1 yes no 3 0.0047895 87.258 2 0.62543 0.78601 NaN 1 Median 0.62543 0.78601 NaN 1 0 Median NaN NaN NaN 0 0 Median 3775100 2270600 1504500 3775100 2270600 1504500 0 0 0 10117 41 10385 36411;36412 54788;54789 54788 2 RLDLVHTAALMLDK ISHDDLKGDPLLDQRRLDLVHTAALMLDKN RRLDLVHTAALMLDKNNLVKYDKKTGNFQV R R L D K N 2 1 0 2 0 0 0 0 1 0 4 1 1 0 0 0 1 0 0 1 0 0 14 1 1594.8865 O75643;A4FU77;Q9H8B9 O75643 953 966 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 0.0047027 30.961 1 0.92175 1.139 NaN 1 Median 0.92175 1.139 NaN 1 0 Median NaN NaN NaN 0 0 Median 2194900 1102600 1092300 2194900 1102600 1092300 0 0 0 10118 1206 10386 36413 54790 54790 1 RLDQELDFILSQQK TSLHREVEKVKLDQKRLDQELDFILSQQKE KRLDQELDFILSQQKELEDLLSPLEELVKE K R L Q K E 0 1 0 2 0 3 1 0 0 1 3 1 0 1 0 1 0 0 0 0 0 0 14 1 1731.9155 M0QXN5;A0A024QZF1;P37198 M0QXN5 312 325 NUP62;hCG_19665 Nuclear pore glycoprotein p62 yes no 3 0.0018714 90.853 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6112700 6112700 0 6112700 6112700 0 0 0 0 10119 12 10387 36414;36415 54791;54792 54791 2 RLDQVEQELNELRETEGGTVLTATTSELEAINK IITRVETYLNENLRKRLDQVEQELNELRET TVLTATTSELEAINKRVKDTMARSEDLDNS K R L N K R 2 2 2 1 0 2 7 2 0 1 5 1 0 0 0 1 5 0 0 2 0 0 33 2 3685.8646 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 839 871 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 4 0.0019923 40.206 3 0.6586 0.79357 8.5874 3 Plateau 0.6586 0.79357 8.5874 3 0 Plateau NaN NaN NaN 0 0 Median 29821000 17593000 12228000 29821000 17593000 12228000 0 0 0 10120 663 10388 36416;36417;36418 54793;54794;54795 54793 3 RLEAELAAHEPAIQGVLDTGK GRDLTGVQNLRKKHKRLEAELAAHEPAIQG AAHEPAIQGVLDTGKKLSDDNTIGKEEIQQ K R L G K K 4 1 0 1 0 1 3 2 1 1 3 1 0 0 1 0 1 0 0 1 0 0 21 1 2217.1753 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16 Q13813 1808 1828 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 3;4 8.413E-08 113.36 5 0.82298 1.0777 19.154 5 Median 0.82298 1.0777 19.154 5 0 Median NaN NaN NaN 0 0 Median 116490000 60162000 56328000 116490000 60162000 56328000 0 0 0 10121 1476 10389 36419;36420;36421;36422;36423 54796;54797;54798;54799;54800;54801;54802;54803 54802 7 RLEAFLTQK QKKLEELELDEQQKKRLEAFLTQKAKVGEL DEQQKKRLEAFLTQKAKVGELKDDDFERIS K R L Q K A 1 1 0 0 0 1 1 0 0 0 2 1 0 1 0 0 1 0 0 0 0 0 9 1 1104.6291 B4DFY5;A4QPA9;Q02750;P36507;A0A1B0GUL7 P36507 53 61 MAP2K1;MAP2K2 Dual specificity mitogen-activated protein kinase kinase 1;Dual specificity mitogen-activated protein kinase kinase 2 no no 2 0.021791 58.23 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10122 1324;558 10390 36424 54804 54804 1 RLEAVLASR EREPGAAGVRRALGRRLEAVLASRSEANAV RRALGRRLEAVLASRSEANAVFDILAVLQS R R L S R S 2 2 0 0 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 9 1 1013.5982 Q9BVI4 Q9BVI4 17 25 NOC4L Nucleolar complex protein 4 homolog yes yes 2 0.013477 61.65 1 0.67758 1.0351 NaN 1 Median NaN NaN NaN 0 0 Median 0.67758 1.0351 NaN 1 0 Median 17472000 10491000 6980900 0 0 0 17472000 10491000 6980900 10123 1718 10391 36425 54805 54805 1 RLEEEEAAAEK MKKLERQRAQEEQAKRLEEEEAAAEKEDRG EQAKRLEEEEAAAEKEDRGRPYTLSVALPG K R L E K E 3 1 0 0 0 0 5 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 11 1 1273.615 Q5T280;B4E0X4;Q9P041 Q5T280 56 66 C9orf114 Putative methyltransferase C9orf114 yes no 2 0.0065324 77.379 1 1 0.40984 0.62958 NaN 1 Median NaN NaN NaN 0 0 Median 0.40984 0.62958 NaN 1 0 Median 10161000 6785900 3375400 317030 317030 0 9844300 6468900 3375400 10124 1567 10392 36426;36427 54806;54807 54807 2 RLEFENQK FEEEKVKRQNEIAKKRLEFENQKTRLGIQL QNEIAKKRLEFENQKTRLGIQLDFEKNQLK K R L Q K T 0 1 1 0 0 1 2 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 8 1 1062.5458 Q14683;G8JLG1;Q6P2R1;Q6MZR8;A8K7A6 Q14683 807 814 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0081089 82.241 2 2 0.71239 1.0085 42.933 4 Median 0.54028 0.70275 33.303 2 0 Median 0.85637 1.3225 20.554 2 0 Median 61922000 37728000 24193000 41692000 27035000 14657000 20229000 10694000 9535900 10125 1492 10393 36428;36429;36430;36431 54808;54809;54810;54811 54809 4 RLEIEHSVPK KAIETFSGKVELQGKRLEIEHSVPKKQRSR ELQGKRLEIEHSVPKKQRSRKIQIRNIPPQ K R L P K K 0 1 0 0 0 0 2 0 1 1 1 1 0 0 1 1 0 0 0 1 0 0 10 1 1206.6721 Q9NZI8 Q9NZI8 67 76 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 3 0.018469 31.597 1 0.60229 0.78003 NaN 1 Median 0.60229 0.78003 NaN 1 0 Median NaN NaN NaN 0 0 Median 9553600 5351900 4201700 9553600 5351900 4201700 0 0 0 10126 1772 10394 36432 54812 54812 1 RLEPVVSDAIYDSK MFTAFLPDSTGSFTRRLEPVVSDAIYDSKA RRLEPVVSDAIYDSKAPNASNLKIVRMDRT R R L S K A 1 1 0 2 0 0 1 0 0 1 1 1 0 0 1 2 0 0 1 2 0 0 14 1 1590.8253 A0A024RDJ4;P19838;D6RF93 A0A024RDJ4 230 243 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit yes no 2 0.0063696 78.486 1 0.69657 0.90791 NaN 1 Median 0.69657 0.90791 NaN 1 0 Median NaN NaN NaN 0 0 Median 1194300 737170 457110 1194300 737170 457110 0 0 0 10127 318 10395 36433 54813;54814 54813 2 RLEQLGAQR KTYEHFNAMGKYVDKRLEQLGAQRIFELGL GKYVDKRLEQLGAQRIFELGLGDDDGNLEE K R L Q R I 1 2 0 0 0 2 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 1 1069.5992 B2R6E5;A8K3B4;Q59ED7;H0Y4R2;P16435;Q63HL4;B4DJI8 B2R6E5 194 202 POR;DKFZp686G04235 NADPH--cytochrome P450 reductase yes no 2 0.017368 85.862 1 0.43304 0.59942 NaN 1 Median 0.43304 0.59942 NaN 1 0 Median NaN NaN NaN 0 0 Median 7246000 4533700 2712300 7246000 4533700 2712300 0 0 0 10128 592 10396 36434 54815 54815 1 RLETLLR IVIGCALEDQKKIKRRLETLLRNIENSDKA EDQKKIKRRLETLLRNIENSDKAIKLLEHS R R L L R N 0 2 0 0 0 0 1 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 7 1 899.55525 B3KN59;B3KM36;O95816 B3KN59 173 179 BAG2 BAG family molecular chaperone regulator 2 yes no 2 0.026854 73.26 1 0.50249 0.67392 NaN 1 Median 0.50249 0.67392 NaN 1 0 Median NaN NaN NaN 0 0 Median 29388000 17627000 11761000 29388000 17627000 11761000 0 0 0 10129 751 10397 36435 54816 54816 1 RLEVKPHALELPDK LHDSWRQKRDKVRLRRLEVKPHALELPDKH RRLEVKPHALELPDKHSLAFVVRIERIDGV R R L D K H 1 1 0 1 0 0 2 0 1 0 3 2 0 0 2 0 0 0 0 1 0 0 14 2 1643.9359 A0A024RD36;Q6DKI1;R4GMU7;B7Z4G0 A0A024RD36 80 93 RPL7L1 60S ribosomal protein L7-like 1 yes no 4 1.2296E-05 75.574 2 0.85697 1.0501 18.649 2 Median 0.85697 1.0501 18.649 2 0 Median NaN NaN NaN 0 0 Median 58832000 27774000 31057000 58832000 27774000 31057000 0 0 0 10130 311 10398 36436;36437 54817;54818;54819 54819 2 RLFEGNALLR KAARELLTLDEKDPRRLFEGNALLRRLVRI EKDPRRLFEGNALLRRLVRIGVLDEGKMKL R R L L R R 1 2 1 0 0 0 1 1 0 0 3 0 0 1 0 0 0 0 0 0 0 0 10 1 1187.6775 A0A024R4M0;P46781;B5MCT8;C9JM19;B7Z732;A5D904 A0A024R4M0 70 79 RPS9 40S ribosomal protein S9 yes no 2;3 5.9034E-07 148.69 7 2 0.7734 1.0476 11.641 8 Median 0.79512 1.0742 7.9631 6 0 Median 0.5409 0.86228 1.6031 2 0 Median 543360000 326680000 216680000 402520000 237140000 165370000 140840000 89536000 51305000 10131 124 10399 36438;36439;36440;36441;36442;36443;36444;36445;36446 54820;54821;54822;54823;54824;54825;54826;54827;54828;54829;54830;54831;54832 54823 13 RLGPGGLDPVEVYESLPEELQK IEKAMKEYEEEERKKRLGPGGLDPVEVYES DPVEVYESLPEELQKCFDVKDVQMLQDAIS K R L Q K C 0 1 0 1 0 1 4 3 0 0 4 1 0 0 3 1 0 0 1 2 0 0 22 1 2424.2537 K7EIU0;A1L0W4;K7EQA9;Q6FG59;A0A024R7B7;Q16543 K7EIU0 35 56 CDC37;MBD5 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes no 3 0.00037005 75.057 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1112300 1112300 0 1112300 1112300 0 0 0 0 10132 172 10400 36447 54833 54833 1 RLGSLVDEFK QAVDLTLPKVEAMNKRLGSLVDEFKELVYP EAMNKRLGSLVDEFKELVYPPDYNPEGKVT K R L F K E 0 1 0 1 0 0 1 1 0 0 2 1 0 1 0 1 0 0 0 1 0 0 10 1 1162.6346 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356;Q6IC76 A0A024R1N4 517 526 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 2 0.00053453 118.71 4 2 0.56932 0.80516 13.249 6 Median 0.575 0.75657 5.9799 4 0 Median 0.56113 0.97209 7.2621 2 0 Median 551880000 341720000 210160000 404370000 250700000 153670000 147510000 91013000 56496000 10133 62 10401 36448;36449;36450;36451;36452;36453 54834;54835;54836;54837;54838;54839;54840 54838 7 RLGTNQENQQPNQQPPGK YHTVLKLQGQVSAKKRLGTNQENQQPNQQP TNQENQQPNQQPPGKKPFLRNLLPRTPTCQ K R L G K K 0 1 3 0 0 5 1 2 0 0 1 1 0 0 3 0 1 0 0 0 0 0 18 1 2033.0039 O95235 O95235 829 846 KIF20A Kinesin-like protein KIF20A yes yes 2;3 3.4363E-19 138.42 6 0.86061 1.1365 6.5901 6 Median 0.86061 1.1365 6.5901 6 0 Median NaN NaN NaN 0 0 Median 100170000 55058000 45110000 100170000 55058000 45110000 0 0 0 10134 1215 10402 36454;36455;36456;36457;36458;36459 54841;54842;54843;54844;54845;54846;54847;54848;54849 54844 8 RLGTNQENQQPNQQPPGKK YHTVLKLQGQVSAKKRLGTNQENQQPNQQP NQENQQPNQQPPGKKPFLRNLLPRTPTCQS K R L K K P 0 1 3 0 0 5 1 2 0 0 1 2 0 0 3 0 1 0 0 0 0 0 19 2 2161.0988 O95235 O95235 829 847 KIF20A Kinesin-like protein KIF20A yes yes 3 0.0012532 70.335 1 0.99625 1.2304 NaN 1 Median 0.99625 1.2304 NaN 1 0 Median NaN NaN NaN 0 0 Median 639590 293630 345960 639590 293630 345960 0 0 0 10135 1215 10403 36460 54850;54851 54851 2 RLGTVLPVIEK ICGLFVESEGVDFEKRLGTVLPVIEKEIDP DFEKRLGTVLPVIEKEIDPENFKDIMEETE K R L E K E 0 1 0 0 0 0 1 1 0 1 2 1 0 0 1 0 1 0 0 2 0 0 11 1 1223.7602 O75691;B4DN27 O75691 2402 2412 UTP20 Small subunit processome component 20 homolog yes no 2 0.002566 72.848 2 1 1.1165 1.7947 24.147 3 Plateau 0.95071 1.247 16.81 2 0 Median 1.1165 1.7947 NaN 1 0 Median 28204000 13752000 14452000 13821000 7578200 6243200 14383000 6173900 8209100 10136 1207 10404 36461;36462;36463 54852;54853;54854 54854 3 RLGYIHR AAATCFPEPFINEGKRLGYIHRNFAGNRFS EPFINEGKRLGYIHRNFAGNRFSDHVALLS K R L H R N 0 2 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 7 1 913.52462 Q08211;B3KU66 Q08211 899 905 DHX9 ATP-dependent RNA helicase A yes no 3 0.001866 106.42 6 0.75663 1.0337 4.4591 2 Median 0.75663 1.0337 4.4591 2 0 Median NaN NaN NaN 0 0 Median 132670000 83928000 48746000 132670000 83928000 48746000 0 0 0 10137 1448 10405 36464;36465;36466;36467;36468;36469 54855;54856;54857;54858;54859;54860;54861 54858 7 RLHGLPEQFLYGTATK RKEWLTNFMEDRRQRRLHGLPEQFLYGTAT LHGLPEQFLYGTATKHLTYNDFINKELILF R R L T K H 1 1 0 0 0 1 1 2 1 0 3 1 0 1 1 0 2 0 1 0 0 0 16 1 1829.9788 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80 Q71UH4 669 684 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 3;4 0.011137 25.957 2 0.57881 0.74977 4.9606 2 Median 0.57881 0.74977 4.9606 2 0 Median NaN NaN NaN 0 0 Median 17927000 11192000 6734600 17927000 11192000 6734600 0 0 0 10138 1437 10406 36470;36471 54862;54863;54864 54864 3 RLHNTIVEINNHK DAVAEKAGKVEAEVKRLHNTIVEINNHKLK VKRLHNTIVEINNHKLKAQQDKLDKINKQL K R L H K L 0 1 3 0 0 0 1 0 2 2 1 1 0 0 0 0 1 0 0 1 0 0 13 1 1586.8641 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 886 898 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3;4 4.4713E-05 111.72 4 0.71399 0.94278 3.1887 4 Median 0.71399 0.94278 3.1887 4 0 Median NaN NaN NaN 0 0 Median 117690000 70457000 47232000 117690000 70457000 47232000 0 0 0 10139 1760 10407 36472;36473;36474;36475 54865;54866;54867;54868;54869;54870 54867 6 RLIAEAK KETPDKVELSKEEVKRLIAEAKEKLQEEGG ELSKEEVKRLIAEAKEKLQEEGGGSDEEET K R L A K E 2 1 0 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 7 1 799.49159 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DNL1;Q86X79;Q05BL3;Q6PKI5;Q6PIN4 Q9BV37 34 40 PWP1 Periodic tryptophan protein 1 homolog yes no 2 0.031306 68.081 1 1 0.66694 0.98605 4.6678 2 Median 0.7241 0.95403 NaN 1 0 Median 0.61428 1.0191 NaN 1 0 Median 39664000 23742000 15923000 18458000 10549000 7908900 21206000 13192000 8013700 10140 273 10408 36476;36477 54871;54872 54872 2 RLIDLHSPSEIVK EGSKTWDRFQMRIHKRLIDLHSPSEIVKQI HKRLIDLHSPSEIVKQITSISIEPGVEVEV K R L V K Q 0 1 0 1 0 0 1 0 1 2 2 1 0 0 1 2 0 0 0 1 0 0 13 1 1505.8566 P60866;G3XAN0 P60866 87 99 RPS20 40S ribosomal protein S20 yes no 3 1.7114E-05 115.37 3 2 0.79895 1.062 39.713 5 Median 0.78203 1.0348 4.6366 3 0 Median 1.2217 2.1011 5.2671 2 0 Median 450760000 243530000 207230000 363010000 202090000 160920000 87754000 41443000 46311000 10141 1389 10409 36478;36479;36480;36481;36482 54873;54874;54875;54876;54877;54878;54879;54880;54881;54882;54883;54884 54880 12 RLIDVPDPVPALDLGQQLQLK KRSKEAEAAFLNVYKRLIDVPDPVPALDLG DPVPALDLGQQLQLKVQRLHDIETENQKLR K R L L K V 1 1 0 3 0 3 0 1 0 1 5 1 0 0 3 0 0 0 0 2 0 0 21 1 2327.3213 P39880;Q13948;A0A097ZMP4;A0A097ZMP6;B4DMN0 P39880 84 104 CUX1;CUX1-RETc;CUX1-RETa Homeobox protein cut-like 1;Protein CASP yes no 3 0.00046374 45.659 2 0.65758 0.86217 14.463 2 Median 0.65758 0.86217 14.463 2 0 Median NaN NaN NaN 0 0 Median 10327000 5838000 4489300 10327000 5838000 4489300 0 0 0 10142 1331 10410 36483;36484 54885;54886;54887;54888 54888 4 RLIPDGCGVK TKFNADEFEDMVAEKRLIPDGCGVKYIPNR MVAEKRLIPDGCGVKYIPNRGPLDKWRALH K R L V K Y 0 1 0 1 1 0 0 2 0 1 1 1 0 0 1 0 0 0 0 1 0 0 10 1 1113.5965 F8W7C6;A0A087WV22;X5D7P1;P27635;X1WI28;X5D2T3 P27635 189 198 RPL10 60S ribosomal protein L10 no no 2 4.4123E-05 128.91 5 3 0.73318 1.0111 7.5534 7 Median 0.74831 0.99064 4.272 4 0 Median 0.57685 1.0281 10.194 3 0 Median 1337800000 794510000 543270000 1210700000 718690000 492010000 127090000 75822000 51265000 10143 1301;1071 10411 36485;36486;36487;36488;36489;36490;36491;36492 54889;54890;54891;54892;54893;54894;54895;54896;54897;54898;54899;54900;54901;54902;54903 54895 15 RLITGASDSELR HRTEVWGLVLLSEEKRLITGASDSELRVWD EEKRLITGASDSELRVWDIAYLQEIEDPEE K R L L R V 1 2 0 1 0 0 1 1 0 1 2 0 0 0 0 2 1 0 0 0 0 0 12 1 1316.7048 Q5TDG3;Q9UNX4 Q5TDG3 205 216 WDR3 WD repeat-containing protein 3 yes no 2;3 0.00064697 115.7 1 1 0.77715 1.0802 58.627 2 Median 0.51659 0.71362 NaN 1 0 Median 1.1691 1.6351 NaN 1 0 Median 32466000 19317000 13149000 23927000 15378000 8548700 8538800 3938200 4600600 10144 1576 10412 36493;36494 54904;54905 54904 2 RLLGYVATLK VATCVRLLGRNSNSKRLLGYVATLKDNFGF NSNSKRLLGYVATLKDNFGFIETANHDKEI K R L L K D 1 1 0 0 0 0 0 1 0 0 3 1 0 0 0 0 1 0 1 1 0 0 10 1 1132.6968 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0;Q9UG93 Q9GZV0 487 496 CSDE1;UNR;DKFZp586J0620 Cold shock domain-containing protein E1 yes no 2 0.0030877 96.948 3 0.3989 0.51891 19.888 3 Median 0.3989 0.51891 19.888 3 0 Median NaN NaN NaN 0 0 Median 28421000 18600000 9820400 28421000 18600000 9820400 0 0 0 10145 31 10413 36495;36496;36497 54906;54907;54908 54908 3 RLLPEEYHR LFTKFIRKFGFELVKRLLPEEYHRVLVNIR GFELVKRLLPEEYHRVLVNIRKAEARAKRH K R L H R V 0 2 0 0 0 0 2 0 1 0 2 0 0 0 1 0 0 0 1 0 0 0 9 1 1211.6411 B3KMR5;Q5JTH9;B3KY97;B3KPQ2 B3KMR5 1022 1030 RRP12 RRP12-like protein yes no 3 0.048188 16.577 1 0.96649 1.2898 NaN 1 Median 0.96649 1.2898 NaN 1 0 Median NaN NaN NaN 0 0 Median 14682000 7108800 7573200 14682000 7108800 7573200 0 0 0 10146 756 10414 36498 54909 54909 1 RLLPSLIGR LLSSFDFFLTDARIRRLLPSLIGRHFYQRK TDARIRRLLPSLIGRHFYQRKKVPVSVNLL R R L G R H 0 2 0 0 0 0 0 1 0 1 3 0 0 0 1 1 0 0 0 0 0 0 9 1 1023.6553 O76021;Q32Q62;J3QSV6;A0PJ61;A0PJ87;I3L3U9;I3L3C4 O76021 163 171 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2;3 2.0652E-08 138.06 4 1 0.66128 0.90462 3.9351 4 Median 0.66128 0.90462 3.9351 4 0 Median NaN NaN NaN 0 0 Median 389660000 225400000 164260000 389660000 225400000 164260000 0 0 0 10147 1210 10415 36499;36500;36501;36502;36503 54910;54911;54912;54913;54914;54915;54916 54913 7 RLLQDLQLGDEEDARK HRKKNSGPKAAKKKKRLLQDLQLGDEEDAR LLQDLQLGDEEDARKRNPKAFAVQSAVRMA K R L R K R 1 2 0 3 0 2 2 1 0 0 4 1 0 0 0 0 0 0 0 0 0 0 16 2 1897.9858 Q14692 Q14692 24 39 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 1.7811E-05 100.69 2 1.0204 1.2763 4.0713 2 Median 1.0204 1.2763 4.0713 2 0 Median NaN NaN NaN 0 0 Median 33331000 13877000 19454000 33331000 13877000 19454000 0 0 0 10148 1495 10416 36504;36505 54917;54918;54919 54917 3 RLLQFYAETCPAPER MISGESGAGKTEATKRLLQFYAETCPAPER RLLQFYAETCPAPERGGAVRDRLLQSNPVL K R L E R G 2 2 0 0 1 1 2 0 0 0 2 0 0 1 2 0 1 0 1 0 0 0 15 1 1849.9145 F5H6E2;B7Z3E5;O00159;B7Z9C0;I3L204;I3L4D4;I3L501;I3L3Y6;I3L168;I3L3F5 F5H6E2 128 142 MYO1C Unconventional myosin-Ic yes no 3 0.00016274 52.522 1 0.68747 0.90899 NaN 1 Median 0.68747 0.90899 NaN 1 0 Median NaN NaN NaN 0 0 Median 12976000 7700200 5275800 12976000 7700200 5275800 0 0 0 10149 905 10417 36506 54920 54920 1 RLLQSPCPFCDSPVF SIARHPAPEDPDWIKRLLQSPCPFCDSPVF RLLQSPCPFCDSPVF_______________ K R L V F - 0 1 0 1 2 1 0 0 0 0 2 0 0 2 3 2 0 0 0 1 0 0 15 1 1821.8542 Q9UKN8;B3KNH2 Q9UKN8 808 822 GTF3C4 General transcription factor 3C polypeptide 4 yes no 2 0.00032294 64.439 2 0.65271 0.90498 NaN 1 Median 0.65271 0.90498 NaN 1 0 Median NaN NaN NaN 0 0 Median 8144700 6435300 1709400 8144700 6435300 1709400 0 0 0 10150 1789 10418 36507;36508 54921;54922 54921 2 RLLVGK GKDVFEAFYKKDLAKRLLVGKSASVDAEKS AFYKKDLAKRLLVGKSASVDAEKSMLSKLK K R L G K S 0 1 0 0 0 0 0 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 6 1 684.46464 Q13619;A0A0A0MR50;B2RBV7;B4DKT2;K4DI93;Q13620 Q13619 460 465 CUL4A;CUL4B Cullin-4A;Cullin-4B yes no 2 0.042061 88.627 1 0.68019 0.89176 NaN 1 Median 0.68019 0.89176 NaN 1 0 Median NaN NaN NaN 0 0 Median 22495000 13103000 9392600 22495000 13103000 9392600 0 0 0 10151 1474 10419 36509 54923 54923 1 RLNDFASTVR VPEPKIIDAALRACRRLNDFASTVRILEVV LRACRRLNDFASTVRILEVVKDKAGPHKEI R R L V R I 1 2 1 1 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 1 0 0 10 1 1177.6204 H3BRM5;H3BV69;P20674;H3BNX8 H3BRM5 17 26 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes no 2 0.0071303 92.239 3 0.61053 0.84661 3.3067 3 Median 0.61053 0.84661 3.3067 3 0 Median NaN NaN NaN 0 0 Median 39382000 24637000 14746000 39382000 24637000 14746000 0 0 0 10152 1109 10420 36510;36511;36512 54924;54925;54926 54925 3 RLNQEVALNLK NSSLTISEGPIVSERRLNQEVALNLKEDHE VSERRLNQEVALNLKEDHEVEVGVLKESVD R R L L K E 1 1 2 0 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 11 1 1296.7514 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1477 1487 AHCTF1 Protein ELYS yes no 2 1.8034E-05 100.02 3 2 0.76382 0.99226 11.176 5 Median 0.79697 1.0701 8.6246 3 0 Median 0.55156 0.92679 8.8277 2 0 Median 100990000 59687000 41306000 55763000 28925000 26838000 45230000 30762000 14468000 10153 1670 10421 36513;36514;36515;36516;36517 54927;54928;54929;54930;54931;54932;54933;54934 54930 8 RLNVWDLSK SPHNETILASSGTDRRLNVWDLSKIGEEQS SSGTDRRLNVWDLSKIGEEQSAEDAEDGPP R R L S K I 0 1 1 1 0 0 0 0 0 0 2 1 0 0 0 1 0 1 0 1 0 0 9 1 1129.6244 Q09028;H0YF10;B4DRT0;H0YCT5;H0YDK2;H0YEU5;Q6FHQ0;Q16576;E9PC52;A8K6A2;Q5JP02 Q6FHQ0 340 348 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 no no 2 0.012758 62.582 1 0.90318 1.4331 NaN 1 Median NaN NaN NaN 0 0 Median 0.90318 1.4331 NaN 1 0 Median 14693000 7422900 7270300 0 0 0 14693000 7422900 7270300 10154 1521;1452 10422 36518 54935 54935 1 RLPDAHSDYAR LSFRRSPTKSSLDYRRLPDAHSDYARYSGS LDYRRLPDAHSDYARYSGSYNDYLRAAQMH R R L A R Y 2 2 0 2 0 0 0 0 1 0 1 0 0 0 1 1 0 0 1 0 0 0 11 1 1299.632 A0A0S2Z4Z0;Q96PK6;B4DNG4 A0A0S2Z4Z0 637 647 RBM14 RNA-binding protein 14 yes no 3 0.0012593 82.774 2 0.50099 0.67791 0.70067 2 Median 0.50099 0.67791 0.70067 2 0 Median NaN NaN NaN 0 0 Median 19811000 12700000 7111000 19811000 12700000 7111000 0 0 0 10155 472 10423 36519;36520 54936;54937;54938 54938 3 RLPILVQLVDTLGAEK ISVFVDALPHVPEHRRLPILVQLVDTLGAE LPILVQLVDTLGAEKFLWILLILLFEQYVT R R L E K F 1 1 0 1 0 1 1 1 0 1 4 1 0 0 1 0 1 0 0 2 0 0 16 1 1764.0509 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8;Q8N7L7 B2RWN5 1395 1410 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 3.5146E-07 73.252 2 0.97815 1.2604 NaN 1 Median 0.97815 1.2604 NaN 1 0 Median NaN NaN NaN 0 0 Median 8313600 3724000 4589600 8313600 3724000 4589600 0 0 0 10156 748 10424 36521;36522 54939;54940;54941 54940 3 RLPNNHIGISFIPR SIKAPSGRDEPCLLKRLPNNHIGISFIPRE KRLPNNHIGISFIPREVGEHLVSIKKNGNH K R L P R E 0 2 2 0 0 0 0 1 1 3 1 0 0 1 2 1 0 0 0 0 0 0 14 1 1632.9212 O75369;A0A024R321;Q68CT4;E7EN95 O75369 1956 1969 FLNB;DKFZp686A1668 Filamin-B yes no 3 0.0095885 28.297 2 0.69689 0.9118 14.108 2 Median 0.69689 0.9118 14.108 2 0 Median NaN NaN NaN 0 0 Median 13024000 6973100 6050700 13024000 6973100 6050700 0 0 0 10157 1199 10425 36523;36524 54942;54943 54943 2 RLPPFETFSQGPTLQFTLR ISKKRATWETILDGKRLPPFETFSQGPTLQ FETFSQGPTLQFTLRWTGETNDKSTAPIAK K R L L R W 0 2 0 0 0 2 1 1 0 0 3 0 0 3 3 1 3 0 0 0 0 0 19 1 2234.1848 J3QQW9;Q15022;A8K1U9 J3QQW9 319 337 SUZ12 Polycomb protein SUZ12 yes no 3 5.465E-11 127.32 4 2 0.80541 1.1797 8.7123 5 Median 0.8128 1.1096 9.0103 4 0 Median 0.80541 1.1946 NaN 1 0 Median 110440000 60587000 49854000 95366000 52224000 43142000 15074000 8363000 6711200 10158 1143 10426 36525;36526;36527;36528;36529;36530 54944;54945;54946;54947;54948;54949;54950;54951;54952;54953;54954 54944 11 RLPPQQIEK ______________________________ ______________________________ R R L E K N 0 1 0 0 0 2 1 0 0 1 1 1 0 0 2 0 0 0 0 0 0 0 9 1 1107.64 B1AK87;B2R7T8;B1AK88;B4DWA6;P47756;B1AK85 B1AK87 3 11 CAPZB F-actin-capping protein subunit beta yes no 2 0.026372 51.066 1 0.93644 1.1859 NaN 1 Median 0.93644 1.1859 NaN 1 0 Median NaN NaN NaN 0 0 Median 5392300 2478500 2913800 5392300 2478500 2913800 0 0 0 10159 672 10427 36531 54955 54955 1 RLPSDVVTGYLALR SKLRFSTIEEFSYIRRLPSDVVTGYLALRK RRLPSDVVTGYLALRKATSIVP________ R R L L R K 1 2 0 1 0 0 0 1 0 0 3 0 0 0 1 1 1 0 1 2 0 0 14 1 1558.8831 Q6PI98;K7EQ79;K7EIY8 Q6PI98 172 185 INO80C INO80 complex subunit C yes no 3 0.019476 22.855 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10160 1595 10428 36532 54956 54956 1 RLPTVLLK LELCDFVTASSFCRRRLPTVLLKLRMAQHL ASSFCRRRLPTVLLKLRMAQHLQAAVAFVE R R L L K L 0 1 0 0 0 0 0 0 0 0 3 1 0 0 1 0 1 0 0 1 0 0 8 1 938.62769 Q9NV31 Q9NV31 110 117 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 2 0.0192 63.48 1 0.9762 1.286 NaN 1 Median 0.9762 1.286 NaN 1 0 Median NaN NaN NaN 0 0 Median 18780000 9039300 9741200 18780000 9039300 9741200 0 0 0 10161 1762 10429 36533 54957 54957 1 RLPVATIFTTHATLLGR HEWLAGVGLCLCRARRLPVATIFTTHATLL PVATIFTTHATLLGRYLCAGAVDFYNNLEN R R L G R Y 2 2 0 0 0 0 0 1 1 1 3 0 0 1 1 0 4 0 0 1 0 0 17 1 1866.084 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6;B7Z8P0 P13807 195 211 GYS1 Glycogen [starch] synthase, muscle yes no 3 1.2222E-30 141.1 5 2 0.70597 0.96847 80.466 6 Median 0.70999 0.97883 2.1938 4 0 Median 0.13343 0.20702 7.8661 2 0 Median 196520000 136110000 60412000 120930000 70034000 50896000 75591000 66075000 9516100 10162 1265 10430 36534;36535;36536;36537;36538;36539;36540 54958;54959;54960;54961;54962;54963;54964;54965;54966;54967;54968 54964 11 RLQDVSGQLNSTK TKEELALEKKRELEKRLQDVSGQLNSTKKP EKRLQDVSGQLNSTKKPPKKANEKTESSSA K R L T K K 0 1 1 1 0 2 0 1 0 0 2 1 0 0 0 2 1 0 0 1 0 0 13 1 1444.7634 A0A024RCR5;A0A0G2JK44;P25440;H0Y6K2;A0A140T9E9;X5CF57;A0A0G2JHN8;A0A140T9I1 A0A024RCR5 739 751 BRD2 Bromodomain-containing protein 2 yes no 2 0.043236 47.288 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10163 300 10431 36541 54969 54969 1 RLQDVSGQLSSSK SKEELAQEKKKELEKRLQDVSGQLSSSKKP EKRLQDVSGQLSSSKKPARKEKPGSAPSGG K R L S K K 0 1 0 1 0 2 0 1 0 0 2 1 0 0 0 4 0 0 0 1 0 0 13 1 1403.7369 A0A024R8H6;Q15059;B4DS09 A0A024R8H6 671 683 BRD3 Bromodomain-containing protein 3 yes no 2 0.017054 39.006 2 0.50831 0.78168 17.143 2 Median NaN NaN NaN 0 0 Median 0.50831 0.78168 17.143 2 0 Median 13096000 8226400 4869600 0 0 0 13096000 8226400 4869600 10164 198 10432 36542;36543 54970;54971 54970 2 RLQELEGQIADLK KKDANQAKLSERRRKRLQELEGQIADLKKK RKRLQELEGQIADLKKKLNEQSKLLKLKES K R L L K K 1 1 0 1 0 2 2 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 13 1 1511.8308 Q59HG1;O95239;Q6PKB2 Q59HG1 604 616 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2;3 0.00021687 112.5 5 1 0.77695 1.0266 12.381 6 Median 0.84457 1.0985 13.226 5 0 Median 0.61583 0.95947 NaN 1 0 Median 53812000 31963000 21849000 46604000 27094000 19510000 7208100 4869700 2338400 10165 1216 10433 36544;36545;36546;36547;36548;36549 54972;54973;54974;54975;54976;54977;54978;54979;54980 54975 9 RLQELEGQIADLKK KKDANQAKLSERRRKRLQELEGQIADLKKK KRLQELEGQIADLKKKLNEQSKLLKLKEST K R L K K K 1 1 0 1 0 2 2 1 0 1 3 2 0 0 0 0 0 0 0 0 0 0 14 2 1639.9257 Q59HG1;O95239;Q6PKB2 Q59HG1 604 617 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 3 0.00069629 53.828 1 0.82243 0.96799 NaN 1 Median 0.82243 0.96799 NaN 1 0 Median NaN NaN NaN 0 0 Median 7609000 4356000 3253000 7609000 4356000 3253000 0 0 0 10166 1216 10434 36550 54981;54982 54982 2 RLQGLSASDVTEQIIK PQRMNEQPRQLFWEKRLQGLSASDVTEQII LQGLSASDVTEQIIKTMELPKGLQGVGPGS K R L I K T 1 1 0 1 0 2 1 1 0 2 2 1 0 0 0 2 1 0 0 1 0 0 16 1 1756.9683 Q9UBB5;O60535 Q9UBB5 286 301 MBD2;NY-CO-41 Methyl-CpG-binding domain protein 2 yes no 2;3 1.4953E-18 145.04 6 2 0.72659 0.94982 44.68 7 Median 0.71193 0.93797 32.635 5 0 Median 1.1495 1.8237 5.023 2 0 Median 116650000 52995000 63657000 89012000 41970000 47042000 27641000 11025000 16615000 10167 1781 10435 36551;36552;36553;36554;36555;36556;36557;36558 54983;54984;54985;54986;54987;54988;54989;54990;54991;54992;54993 54991 11 RLQGQLEQGDDTAAER LRADTKRLKLLEEERRLQGQLEQGDDTAAE LQGQLEQGDDTAAERLEKVYEELRATGAAA R R L E R L 2 2 0 2 0 3 2 2 0 0 2 0 0 0 0 0 1 0 0 0 0 0 16 1 1785.8606 Q8NE71;Q2L6I2;Q59F96;H0YGW7 Q8NE71 396 411 ABCF1 ATP-binding cassette sub-family F member 1 yes no 3 8.464E-05 37.645 1 0.49042 0.63447 NaN 1 Median 0.49042 0.63447 NaN 1 0 Median NaN NaN NaN 0 0 Median 7332800 4868200 2464600 7332800 4868200 2464600 0 0 0 10168 1653 10436 36559 54994 54994 1 RLQGQLEQGDDTAAERLEK LRADTKRLKLLEEERRLQGQLEQGDDTAAE QLEQGDDTAAERLEKVYEELRATGAAAAEA R R L E K V 2 2 0 2 0 3 3 2 0 0 3 1 0 0 0 0 1 0 0 0 0 0 19 2 2156.0822 Q8NE71;Q2L6I2;Q59F96;H0YGW7 Q8NE71 396 414 ABCF1 ATP-binding cassette sub-family F member 1 yes no 3 2.7867E-72 226.08 2 0.52218 0.61433 NaN 1 Median 0.52218 0.61433 NaN 1 0 Median NaN NaN NaN 0 0 Median 8377100 6849700 1527500 8377100 6849700 1527500 0 0 0 10169 1653 10437 36560;36561 54995;54996;54997 54995 3 RLQQEFEDKLEVEQQNK LKYERAVREVDFTKKRLQQEFEDKLEVEQQ QQEFEDKLEVEQQNKRQLERRLGDLQADSE K R L N K R 0 1 1 1 0 4 4 0 0 0 2 2 0 1 0 0 0 0 0 1 0 0 17 2 2160.0811 A0A0D9SFK2;A0A024QZ63;Q92614;B4DYM1;B4E0T8;B4DZ32 A0A0D9SFK2 1387 1403 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 3 0.00037023 47.223 1 0.29661 0.34896 NaN 1 Median 0.29661 0.34896 NaN 1 0 Median NaN NaN NaN 0 0 Median 6427000 4563900 1863100 6427000 4563900 1863100 0 0 0 10170 6 10438 36562 54998 54998 1 RLQQQQRPEDAEDGAEGGGK ______________________________ QRPEDAEDGAEGGGKRGEAGWEGGYPEIVK R R L G K R 2 2 0 2 0 4 3 4 0 0 1 1 0 0 1 0 0 0 0 0 0 0 20 2 2168.0206 Q08J23;A0A140T9Y7 Q08J23 9 28 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 3 1.1082E-05 97.502 1 0.44161 0.49342 NaN 1 Median 0.44161 0.49342 NaN 1 0 Median NaN NaN NaN 0 0 Median 1345800 864250 481530 1345800 864250 481530 0 0 0 10171 1451 10439 36563 54999 54999 1 RLQTHLQSQR WTLKRQSRNGVPLLRRLQTHLQSQRNCDQV VPLLRRLQTHLQSQRNCDQVGRDSEDKNWA R R L Q R N 0 2 0 0 0 3 0 0 1 0 2 0 0 0 0 1 1 0 0 0 0 0 10 1 1265.6953 P55201 P55201 559 568 BRPF1 Peregrin yes yes 2;3 0.00153 88.155 4 0.69053 0.90309 14.319 3 Median 0.69053 0.90309 14.319 3 0 Median NaN NaN NaN 0 0 Median 14733000 9745200 4988200 14733000 9745200 4988200 0 0 0 10172 1379 10440 36564;36565;36566;36567 55000;55001;55002;55003;55004;55005 55001 6 RLQTQVFK LDYILGLKIEDFLERRLQTQVFKLGLAKSI IEDFLERRLQTQVFKLGLAKSIHHARVLIR R R L F K L 0 1 0 0 0 2 0 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 8 1 1018.5924 A0A024R4M0;P46781;B5MCT8;C9JM19;B7Z732;A5D904 A0A024R4M0 109 116 RPS9 40S ribosomal protein S9 yes no 2 7.2813E-05 133.23 6 2 0.70736 0.91113 11.984 7 Median 0.74701 0.98808 7.7261 5 0 Median 0.4493 0.78282 6.2844 2 0 Median 877900000 541040000 336870000 653720000 388310000 265410000 224180000 152730000 71455000 10173 124 10441 36568;36569;36570;36571;36572;36573;36574;36575 55006;55007;55008;55009;55010;55011;55012;55013;55014;55015;55016 55009 11 RLQTSEAALSSSQAEVASLR EERRGLMSQLEEKERRLQTSEAALSSSQAE EAALSSSQAEVASLRQETVAQAALLTEREE R R L L R Q 4 2 0 0 0 2 2 0 0 0 3 0 0 0 0 5 1 0 0 1 0 0 20 1 2103.092 A0A024RCS7;Q9BW19;B4DMA8 A0A024RCS7 254 273 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 3 0.0010176 58.107 1 0.83936 1.132 NaN 1 Median 0.83936 1.132 NaN 1 0 Median NaN NaN NaN 0 0 Median 2290200 944510 1345700 2290200 944510 1345700 0 0 0 10174 303 10442 36576 55017 55017 1 RLSEDYGVLK GLGPLNIPLLADVTRRLSEDYGVLKTDEGI ADVTRRLSEDYGVLKTDEGIAYRGLFIIDG R R L L K T 0 1 0 1 0 0 1 1 0 0 2 1 0 0 0 1 0 0 1 1 0 0 10 1 1178.6295 B4DF70;V9HW12;P32119;A6NIW5 B4DF70 110 119 HEL-S-2a;PRDX2 Peroxiredoxin-2 yes no 2 0.02145 47.198 1 0.4934 0.63642 NaN 1 Median 0.4934 0.63642 NaN 1 0 Median NaN NaN NaN 0 0 Median 4672300 3082100 1590200 4672300 3082100 1590200 0 0 0 10175 801 10443 36577 55018 55018 1 RLSELLR KNLKLGIHEDSTNRRRLSELLRYHTSQSGD HEDSTNRRRLSELLRYHTSQSGDEMTSLSE R R L L R Y 0 2 0 0 0 0 1 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 7 1 885.5396 A0A024RD80;P08238;B4DMA2;B4DGL0;Q9H6X9;A8K3W9 A0A024RD80 450 456 HSP90AB1 Heat shock protein HSP 90-beta no no 2 0.018335 89.55 1 0.32938 0.43495 NaN 1 Median 0.32938 0.43495 NaN 1 0 Median NaN NaN NaN 0 0 Median 12518000 9518200 2999500 12518000 9518200 2999500 0 0 0 10176 312;598 10444 36578 55019 55019 1 RLSFAVPFR SDEMMKSYVAWDREKRLSFAVPFREMKPVI AWDREKRLSFAVPFREMKPVIFLDVFLPRV K R L F R E 1 2 0 0 0 0 0 0 0 0 1 0 0 2 1 1 0 0 0 1 0 0 9 1 1091.624 P78527;B4DL41 P78527 891 899 PRKDC DNA-dependent protein kinase catalytic subunit yes no 3 0.004252 47.187 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1809700 1809700 0 1809700 1809700 0 0 0 0 10177 1427 10445 36579 55020 55020 1 RLSLSTSK DLEEAEGRLAAPLLKRLSLSTSKLNSLAIG LAAPLLKRLSLSTSKLNSLAIGLRQIAASS K R L S K L 0 1 0 0 0 0 0 0 0 0 2 1 0 0 0 3 1 0 0 0 0 0 8 1 890.51853 P54886 P54886 425 432 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.050181 45.335 1 1.7481 2.4593 NaN 1 Median NaN NaN NaN 0 0 Median 1.7481 2.4593 NaN 1 0 Median 2415000 662360 1752600 0 0 0 2415000 662360 1752600 10178 1375 10446 36580 55021 55021 1 RLSPPECLNASLLGGVLR SSTSKYKVTVAEVQRRLSPPECLNASLLGG PPECLNASLLGGVLRRAKSKNGGRSLREKL R R L L R R 1 2 1 0 1 0 1 2 0 0 5 0 0 0 2 2 0 0 0 1 0 0 18 1 1951.0673 Q96SH1;P05549;C9JXZ2;H7C5E5;C1K3N0;Q6VUC0;B2R9E2;A8K557;Q92481 Q96SH1 239 256 TFAP2A;TFAP2E;TFAP2B Transcription factor AP-2-alpha;Transcription factor AP-2-epsilon;Transcription factor AP-2-beta no no 3 0.028234 61.096 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10179 1238 10447 36581 55022 55022 1 RLSQEQVDNFTLDINTAYAR QNLSEKLSEQELQFRRLSQEQVDNFTLDIN QVDNFTLDINTAYARLRGIEQAVQSHAVAE R R L A R L 2 2 2 2 0 2 1 0 0 1 2 0 0 1 0 1 2 0 1 1 0 0 20 1 2353.1662 B4DS66;C9J406;H7C463;Q16891;B9A067;B4DQY2;B4DKR1;B4DT20 Q16891 526 545 IMMT MICOS complex subunit MIC60 no no 3 1.4604E-10 80.752 2 0.40375 0.53178 NaN 1 Median 0.40375 0.53178 NaN 1 0 Median NaN NaN NaN 0 0 Median 14232000 9093400 5138800 14232000 9093400 5138800 0 0 0 10180 1524;854 10448 36582;36583 55023;55024;55025 55023 3 RLSTIDESGSILSDISFDK FLNRGQPSSSNAGNKRLSTIDESGSILSDI IDESGSILSDISFDKTDESLDWDSSLVKTF K R L D K T 0 1 0 3 0 0 1 1 0 3 2 1 0 1 0 5 1 0 0 0 0 0 19 1 2082.0481 B2RE34;A0A024R136;Q9H0H5;F8VRD2;F8VWY4;F8VVE5;F8VQZ5;F8VV37;F8W1E5;F8W1T4 B2RE34 142 160 RACGAP1 Rac GTPase-activating protein 1 yes no 3 4.9498E-07 57.045 4 0.7035 0.91798 5.4446 4 Median 0.7035 0.91798 5.4446 4 0 Median NaN NaN NaN 0 0 Median 31752000 18199000 13554000 31752000 18199000 13554000 0 0 0 10181 49 10449 36584;36585;36586;36587 55026;55027;55028;55029;55030;55031;55032 55031 7 RLSYNTASNK ______________________________ LTYRRRLSYNTASNKTRLSRTPGNRIVYLY R R L N K T 1 1 2 0 0 0 0 0 0 0 1 1 0 0 0 2 1 0 1 0 0 0 10 1 1152.5887 A0A024RDH8;P49207 A0A024RDH8 10 19 RPL34 60S ribosomal protein L34 yes no 2 0.0038249 104.42 1 0.83601 1.0981 NaN 1 Median 0.83601 1.0981 NaN 1 0 Median NaN NaN NaN 0 0 Median 1749200 945890 803280 1749200 945890 803280 0 0 0 10182 316 10450 36588 55033;55034 55033 2 RLTLDHEK VRKEKPKEDAYEYKKRLTLDHEKSKLSLAE DAYEYKKRLTLDHEKSKLSLAEIYEQEYIK K R L E K S 0 1 0 1 0 0 1 0 1 0 2 1 0 0 0 0 1 0 0 0 0 0 8 1 1010.5509 B3KPV5;O00566 B3KPV5 457 464 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 3 0.0023479 80.688 2 0.92836 1.2299 13.759 2 Median 0.92836 1.2299 13.759 2 0 Median NaN NaN NaN 0 0 Median 43976000 23315000 20661000 43976000 23315000 20661000 0 0 0 10183 767 10451 36589;36590 55035;55036 55036 2 RLTVSSLQESGLK SPFVVPVASPSGDARRLTVSSLQESGLKVN ARRLTVSSLQESGLKVNQPASFAVSLNGAK R R L L K V 0 1 0 0 0 1 1 1 0 0 3 1 0 0 0 3 1 0 0 1 0 0 13 1 1416.7936 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4DTD5 P21333 2334 2346 FLNA;FLJ00119 Filamin-A yes no 2;3 0.00017211 106.26 6 0.91648 1.1937 10.609 5 Median 0.91648 1.1937 10.609 5 0 Median NaN NaN NaN 0 0 Median 119620000 67450000 52170000 119620000 67450000 52170000 0 0 0 10184 1287 10452 36591;36592;36593;36594;36595;36596 55037;55038;55039;55040;55041;55042;55043;55044;55045;55046;55047 55042 11 RLVHSAVDVPTIQEK DLNKKGKDNKHPMYRRLVHSAVDVPTIQEK RLVHSAVDVPTIQEKVNEGKYRSYEEFKAD R R L E K V 1 1 0 1 0 1 1 0 1 1 1 1 0 0 1 1 1 0 0 3 0 0 15 1 1690.9366 Q5BJG6;B7Z3W2;J3QKD2;Q15326;Q6PJR5;A0A0A0MRY2;B0QZE2;B7Z2J6;Q5UGI2 Q5BJG6 96 110 ZMYND11 Zinc finger MYND domain-containing protein 11 yes no 3 0.0032637 42.191 1 1.1757 1.5368 NaN 1 Median 1.1757 1.5368 NaN 1 0 Median NaN NaN NaN 0 0 Median 11727000 5005500 6721600 11727000 5005500 6721600 0 0 0 10185 906 10453 36597 55048 55048 0 RLVIQDK FRRRREGKTDYYARKRLVIQDKNKYNTPKY KTDYYARKRLVIQDKNKYNTPKYRMIVRVT K R L D K N 0 1 0 1 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 7 1 870.5287 A2RUM7;P46777;Q59GX9;Q9BUV4;R4GNJ2 A2RUM7 35 41 RPL5 60S ribosomal protein L5 yes no 2 4.9633E-13 176.66 3 2 0.70764 1.0082 4.1569 5 Median 0.7424 0.97582 3.6439 3 0 Median 0.59692 1.0278 2.6581 2 0 Median 1258600000 724650000 533950000 1162700000 665490000 497260000 95847000 59165000 36683000 10186 540 10454 36598;36599;36600;36601;36602 55049;55050;55051;55052;55053;55054;55055;55056;55057 55051 9 RLVPGGGATEIELAK VDDGVNTFKVLTRDKRLVPGGGATEIELAK RLVPGGGATEIELAKQITSYGETCPGLEQY K R L A K Q 2 1 0 0 0 0 2 3 0 1 2 1 0 0 1 0 1 0 0 1 0 0 15 1 1509.8515 Q7Z759;Q53HU0;P50990 Q7Z759 356 370 CCT8 T-complex protein 1 subunit theta yes no 3 0.0001176 95.822 2 0.28115 0.37717 NaN 1 Median 0.28115 0.37717 NaN 1 0 Median NaN NaN NaN 0 0 Median 5119300 4090500 1028800 5119300 4090500 1028800 0 0 0 10187 1359 10455 36603;36604 55058;55059;55060 55059 3 RLVQSPNSYFMDVK LHPSPEEEKRKHKKKRLVQSPNSYFMDVKC KRLVQSPNSYFMDVKCPGCYKITTVFSHAQ K R L V K C 0 1 1 1 0 1 0 0 0 0 1 1 1 1 1 2 0 0 1 2 0 0 14 1 1682.845 H0YMV8;Q71UM5;C9JLI6;A4D1G5;P42677;Q5T4L4 P42677 23 36 RPS27L;LOC392748;RPS27 40S ribosomal protein S27;40S ribosomal protein S27-like no no 2;3 2.4513E-14 116.01 7 1 0.78498 1.0247 20.796 7 Median 0.79901 1.0415 11.441 6 0 Median 0.37351 0.63097 NaN 1 0 Median 77258000 46674000 30584000 55864000 32071000 23793000 21394000 14603000 6791600 10188 1337;1103 10456;10457 36605;36606;36607;36608;36609;36610;36611;36612 55061;55062;55063;55064;55065;55066;55067;55068;55069;55070;55071;55072 55069 392 12 RLVTIK ______________________________ ______________________________ R R L I K R 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 6 1 728.49086 P46013;Q70L72;Q70L73 P46013 6 11 MKI67 Antigen KI-67 no no 2 0.046464 79.454 1 0.80738 1.0518 NaN 1 Median 0.80738 1.0518 NaN 1 0 Median NaN NaN NaN 0 0 Median 24115000 13637000 10478000 24115000 13637000 10478000 0 0 0 10189 1342;1604 10458 36613 55073 55073 1 RLVTTGVLK KVGENADSQIKLSIKRLVTTGVLKQTKGVG IKLSIKRLVTTGVLKQTKGVGASGSFRLAK K R L L K Q 0 1 0 0 0 0 0 1 0 0 2 1 0 0 0 0 2 0 0 2 0 0 9 1 985.62842 P07305 P07305 74 82 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes yes 2 0.00028414 124.08 4 0.58856 0.7791 3.9217 4 Median 0.58856 0.7791 3.9217 4 0 Median NaN NaN NaN 0 0 Median 457340000 295280000 162060000 457340000 295280000 162060000 0 0 0 10190 1240 10459 36614;36615;36616;36617 55074;55075;55076;55077 55074 4 RLYVGGLSQDISEADLQNQFSR ______________________________ SQDISEADLQNQFSRFGEVSDVEIITRKDD K R L S R F 1 2 1 2 0 3 1 2 0 1 3 0 0 1 0 3 0 0 1 1 0 0 22 1 2495.2405 F5H101;A0A024R250;Q76FK4;F8WE42;B4DM91;F5GWN9;A0A0A0MSJ1;F5H8B8;F5H532;F5H0I5;F5GXV1 F5H101 9 30 NOL8 Nucleolar protein 8 yes no 3 0.00015469 62.765 1 0.80482 1.087 NaN 1 Median 0.80482 1.087 NaN 1 0 Median NaN NaN NaN 0 0 Median 2355300 1485000 870270 2355300 1485000 870270 0 0 0 10191 80 10460 36618 55078 55078 1 RLYWDDLK SPVREEPGEDFPAARRLYWDDLKRKLSEKL EDFPAARRLYWDDLKRKLSEKLDSTDFTST R R L L K R 0 1 0 2 0 0 0 0 0 0 2 1 0 0 0 0 0 1 1 0 0 0 8 1 1107.5713 A8K6Q8;P02786;G3V0E5 A8K6Q8 121 128 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 0.040423 97.071 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10192 626 10461 36619 55079 55079 1 RMATEVAADALGEEWK IEVDDERKLRTFYEKRMATEVAADALGEEW MATEVAADALGEEWKGYVVRISGGNDKQGF K R M W K G 4 1 0 1 0 0 3 1 0 0 1 1 1 0 0 0 1 1 0 1 0 0 16 1 1775.8512 Q96DV6;A2A3R6;P62753;A2A3R7 Q96DV6 31 46 RPS6 40S ribosomal protein S6 yes no 2;3 1.7632E-05 60.093 5 0.40787 0.72647 6.1556 5 Median NaN NaN NaN 0 0 Median 0.40787 0.72647 6.1556 5 0 Median 306310000 216110000 90197000 0 0 0 306310000 216110000 90197000 10193 535 10462 36620;36621;36622;36623;36624 55080;55081;55082;55083;55084 55083 183 4 RMEELHNQEVQK MLMRQDLMRRQEELRRMEELHNQEVQKRKQ ELRRMEELHNQEVQKRKQLELRQEEERRRR R R M Q K R 0 1 1 0 0 2 3 0 1 0 1 1 1 0 0 0 0 0 0 1 0 0 12 1 1539.7464 A8K525;A0A0S2Z4Z9;Q15233;H7C367;C9JYS8 A8K525 325 336 NONO Non-POU domain-containing octamer-binding protein yes no 3 0.00032987 61.532 1 4.0965 6.1367 NaN 1 Median NaN NaN NaN 0 0 Median 4.0965 6.1367 NaN 1 0 Median 4708700 898070 3810700 0 0 0 4708700 898070 3810700 10194 473 10463 36625 55085 55085 166 1 RMLAIK IVLRLECVEPNCRSKRMLAIKRCKHFELGG CVEPNCRSKRMLAIKRCKHFELGGDKKRKG K R M I K R 1 1 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 6 1 730.45237 J3KQN4;Q969Q0;P83881;B2R4V2;H0Y5B4;H7BZ11 J3KQN4 117 122 RPL36A;RPL36AL;RPL36A-HNRNPH2 60S ribosomal protein L36a-like;60S ribosomal protein L36a yes no 2 0.032009 120.76 3 0.94544 1.2512 20.581 3 Median 0.94544 1.2512 20.581 3 0 Median NaN NaN NaN 0 0 Median 123510000 62054000 61458000 123510000 62054000 61458000 0 0 0 10195 1136 10464 36626;36627;36628 55086;55087;55088 55086 3 RMLAIKR IVLRLECVEPNCRSKRMLAIKRCKHFELGG VEPNCRSKRMLAIKRCKHFELGGDKKRKGQ K R M K R C 1 2 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 7 2 886.55348 J3KQN4;Q969Q0;P83881;B2R4V2;H0Y5B4;H7BZ11 J3KQN4 117 123 RPL36A;RPL36AL;RPL36A-HNRNPH2 60S ribosomal protein L36a-like;60S ribosomal protein L36a yes no 3 0.019997 81.784 3 1.0111 1.238 11.848 3 Median 1.0111 1.238 11.848 3 0 Median NaN NaN NaN 0 0 Median 14275000 6733100 7541700 14275000 6733100 7541700 0 0 0 10196 1136 10465;10466 36629;36630;36631 55089;55090;55091 55090 3 RMVVPAALK LKVFDGIPPPYDKKKRMVVPAALKVVRLKP PYDKKKRMVVPAALKVVRLKPTRKFAYLGR K R M L K V 2 1 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 2 0 0 9 1 983.59501 Q53H34;P40429;Q5QTS3;M0QYS1;Q8J015;Q0VGL3;Q6NVV1;Q9BSQ6 Q53H34 117 125 RPL13A;RPL13a;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 no no 2 0.0015836 100.45 4 0.7508 0.97797 13.975 4 Median 0.7508 0.97797 13.975 4 0 Median NaN NaN NaN 0 0 Median 65116000 35014000 30102000 65116000 35014000 30102000 0 0 0 10197 1332;1712 10467;10468 36632;36633;36634;36635 55092;55093;55094;55095;55096 55093 558 3 RNAAPPPSNTEAPPGETR AFAIPMIHAVLQWQKRNAAPPPSNTEAPPG APPPSNTEAPPGETRTEAGAETRSPGKAEA K R N T R T 3 2 2 0 0 0 2 1 0 0 0 0 0 0 5 1 2 0 0 0 0 0 18 1 1860.9078 B4DKV2;G3V529;Q9GZR7;F5GYL3;B4E300;B4DM03;Q59FS7 B4DKV2 168 185 DDX24 ATP-dependent RNA helicase DDX24 yes no 3 4.7143E-05 40.968 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3570300 3570300 0 0 0 0 3570300 3570300 0 10198 822 10469 36636;36637 55097;55098 55098 2 RNCFASVFEK PASKDSIVHQAGMLKRNCFASVFEKYFQFQ AGMLKRNCFASVFEKYFQFQEEGKEGENRA K R N E K Y 1 1 1 0 1 0 1 0 0 0 0 1 0 2 0 1 0 0 0 1 0 0 10 1 1256.5972 Q53R19;O15144;A0A024R408;Q9BXV5 Q53R19 118 127 ARPC2 Actin-related protein 2/3 complex subunit 2 yes no 2 0.00089472 81.594 3 1.2805 1.6883 4.3559 2 Median 1.2805 1.6883 4.3559 2 0 Median NaN NaN NaN 0 0 Median 16050000 6416900 9632700 16050000 6416900 9632700 0 0 0 10199 1177 10470 36638;36639;36640 55099;55100;55101;55102 55101 4 RNCSVTGIDDLEQIPADTTDINHLETQPVSSK RRCSLGIFLPRLPNKRNCSVTGIDDLEQIP TTDINHLETQPVSSKDSGIGSVAGKLNLSP K R N S K D 1 1 2 4 1 2 2 1 1 3 2 1 0 0 2 3 4 0 0 2 0 0 32 1 3552.7002 Q8NG31;H0YCZ2;E9PPJ1 Q8NG31 1687 1718 CASC5 Protein CASC5 yes no 4 1.3119E-05 64.126 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2191900 2191900 0 2191900 2191900 0 0 0 0 10200 1656 10471 36641 55103 55103 1 RNDFQLIGIQDGYLSLLQDSGEVR DICPSTHNMDVPNIKRNDFQLIGIQDGYLS QDGYLSLLQDSGEVREDLRLPEGDLGKEIE K R N V R E 0 2 1 3 0 3 1 3 0 2 4 0 0 1 0 2 0 0 1 1 0 0 24 1 2735.3879 I3L397;I3L504;P63241 I3L397 86 109 EIF5A Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1 yes no 3 6.1214E-23 132.39 3 0.34945 0.47799 0.63326 2 Median 0.34945 0.47799 0.63326 2 0 Median NaN NaN NaN 0 0 Median 107440000 82401000 25044000 107440000 82401000 25044000 0 0 0 10201 1127 10472 36642;36643;36644 55104;55105;55106;55107;55108 55104 5 RNDHDDDEDEEVISK TDVMVRCLKLLKEFKRNDHDDDEDEEVISK RNDHDDDEDEEVISKTVPPVDIVFERDMLT K R N S K T 0 1 1 5 0 0 3 0 1 1 0 1 0 0 0 1 0 0 0 1 0 0 15 1 1814.7555 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 341 355 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 3 7.9793E-06 106.3 3 0.58146 0.76715 21.447 3 Median 0.58146 0.76715 21.447 3 0 Median NaN NaN NaN 0 0 Median 30634000 19753000 10881000 30634000 19753000 10881000 0 0 0 10202 1457 10473 36645;36646;36647 55109;55110;55111;55112 55109 4 RNEEEESTSQIERPLSQEPAK PVYVPVPKQTIKKTKRNEEEESTSQIERPL STSQIERPLSQEPAKKVKAKKKHTNAEKKL K R N A K K 1 2 1 0 0 2 6 0 0 1 1 1 0 0 2 3 1 0 0 0 0 0 21 2 2456.1779 P42696;A2A2V2;Q5TCT4 P42696 84 104 RBM34 RNA-binding protein 34 yes no 3;4 1.0061E-05 93.029 4 2 0.79977 1.175 11 5 Median 0.91993 1.1247 9.8346 3 0 Median 0.75203 1.2524 7.2018 2 0 Median 93579000 54361000 39218000 62804000 36842000 25963000 30775000 17520000 13255000 10203 1339 10474 36648;36649;36650;36651;36652;36653 55113;55114;55115;55116;55117;55118;55119;55120 55115 8 RNEEEESTSQIERPLSQEPAKK PVYVPVPKQTIKKTKRNEEEESTSQIERPL TSQIERPLSQEPAKKVKAKKKHTNAEKKLA K R N K K V 1 2 1 0 0 2 6 0 0 1 1 2 0 0 2 3 1 0 0 0 0 0 22 3 2584.2729 P42696;A2A2V2;Q5TCT4 P42696 84 105 RBM34 RNA-binding protein 34 yes no 4 6.3245E-08 73.722 3 0.91263 0.98369 23.85 3 Median 0.91263 0.98369 23.85 3 0 Median NaN NaN NaN 0 0 Median 73148000 35279000 37868000 73148000 35279000 37868000 0 0 0 10204 1339 10475 36654;36655;36656 55121;55122;55123;55124;55125 55124 5 RNEIDAEPPAK RKRRGGFAVQAKKPKRNEIDAEPPAKRHAT KKPKRNEIDAEPPAKRHATAEEVEEEERDR K R N A K R 2 1 1 1 0 0 2 0 0 1 0 1 0 0 2 0 0 0 0 0 0 0 11 1 1238.6255 Q8TDN6;A0JLQ5;B4E0B8;Q9NUW4 Q8TDN6 21 31 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 2;3 3.2845E-07 121.36 8 4 0.92941 1.2872 10.601 11 Median 0.95944 1.2785 7.2398 7 0 Median 0.8698 1.5584 13.037 4 0 Linear 898380000 464380000 434000000 536700000 270660000 266040000 361680000 193720000 167960000 10205 1659 10476 36657;36658;36659;36660;36661;36662;36663;36664;36665;36666;36667;36668 55126;55127;55128;55129;55130;55131;55132;55133;55134;55135;55136;55137;55138;55139;55140;55141 55131 16 RNEIDAEPPAKR RKRRGGFAVQAKKPKRNEIDAEPPAKRHAT KPKRNEIDAEPPAKRHATAEEVEEEERDRI K R N K R H 2 2 1 1 0 0 2 0 0 1 0 1 0 0 2 0 0 0 0 0 0 0 12 2 1394.7266 Q8TDN6;A0JLQ5;B4E0B8;Q9NUW4 Q8TDN6 21 32 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 3 0.0031921 62.298 3 0.97597 1.1737 8.0994 3 Median 0.97597 1.1737 8.0994 3 0 Median NaN NaN NaN 0 0 Median 37377000 17301000 20076000 37377000 17301000 20076000 0 0 0 10206 1659 10477 36669;36670;36671 55142;55143;55144;55145 55144 4 RNENQLIIFADDTYPR IVSDVQESFIWVRYKRNENQLIIFADDTYP NENQLIIFADDTYPRWVTTASLLDYDTVAG K R N P R W 1 2 2 2 0 1 1 0 0 2 1 0 0 1 1 0 1 0 1 0 0 0 16 1 1963.9752 A8K6V3;Q15393;B3KQH1;B3KM77 A8K6V3 1016 1031 SF3B3 Splicing factor 3B subunit 3 yes no 3 0.007263 27.714 1 0.52843 0.69716 NaN 1 Median 0.52843 0.69716 NaN 1 0 Median NaN NaN NaN 0 0 Median 5023400 3192200 1831200 5023400 3192200 1831200 0 0 0 10207 628 10478 36672 55146 55146 1 RNFILDQCNVYNSGQR SQCLSKLVQIASRTKRNFILDQCNVYNSGQ NFILDQCNVYNSGQRRKLLLFKTFSRKVVV K R N Q R R 0 2 3 1 1 2 0 1 0 1 1 0 0 1 0 1 0 0 1 1 0 0 16 1 1982.9381 H3BQZ7;Q1KMD3 H3BQZ7 531 546 HNRNPUL2-BSCL2;HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 3 0.0023428 63.145 2 0.37566 0.47087 NaN 1 Median 0.37566 0.47087 NaN 1 0 Median NaN NaN NaN 0 0 Median 5695500 4261800 1433800 5695500 4261800 1433800 0 0 0 10208 1105 10479 36673;36674 55147;55148 55148 2 RNFILDQTNVSAAAQR PQCLGKFIEIAARKKRNFILDQTNVSAAAQ NFILDQTNVSAAAQRRKMCLFAGFQRKAVV K R N Q R R 3 2 2 1 0 2 0 0 0 1 1 0 0 1 0 1 1 0 0 1 0 0 16 1 1802.9387 Q96BA7;B3KX72;B4DLR3;Q00839;Q7Z4Q5 Q96BA7 472 487 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 2;3 7.5782E-09 116 2 0.36724 0.50406 22.909 2 Median 0.36724 0.50406 22.909 2 0 Median NaN NaN NaN 0 0 Median 35117000 22536000 12581000 35117000 22536000 12581000 0 0 0 10209 788 10480 36675;36676 55149;55150;55151 55150 3 RNHNLALGR KSEHQKLEENIDNIKRNHNLALGRQKGYEE NIDNIKRNHNLALGRQKGYEEEIIHFKKEL K R N G R Q 1 2 2 0 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 9 1 1049.5843 Q92878 Q92878 1069 1077 RAD50 DNA repair protein RAD50 yes yes 3 0.03669 24.838 1 0.40201 0.5329 NaN 1 Median 0.40201 0.5329 NaN 1 0 Median NaN NaN NaN 0 0 Median 7374900 4629600 2745300 7374900 4629600 2745300 0 0 0 10210 1676 10481 36677 55152 55152 1 RNIHAAAHQVR PRKDKNLPNVIINEKRNIHAAAHQVRVLPY INEKRNIHAAAHQVRVLPYPFTHHWQFERT K R N V R V 3 2 1 0 0 1 0 0 2 1 0 0 0 0 0 0 0 0 0 1 0 0 11 1 1271.6959 Q9BVJ6;B4E343 Q9BVJ6 673 683 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 4 0.00013272 119.53 3 0.83692 1.1178 17.154 3 Median 0.83692 1.1178 17.154 3 0 Median NaN NaN NaN 0 0 Median 19871000 10380000 9491400 19871000 10380000 9491400 0 0 0 10211 1719 10482 36678;36679;36680 55153;55154;55155;55156 55153 4 RNIPPYFVALVPQEEELDDQK CLEKEVAALCRYTPRRNIPPYFVALVPQEE FVALVPQEEELDDQKIQVTPPGFQLVFLPF R R N Q K I 1 1 1 2 0 2 3 0 0 1 2 1 0 1 3 0 0 0 1 2 0 0 21 1 2499.2646 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356;Q6IC76 A0A024R1N4 404 424 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 3 4.1019E-26 143.69 4 2 0.53248 0.71299 19.248 6 Median 0.54228 0.71299 9.6254 4 0 Median 0.4453 0.74392 39.536 2 0 Median 247660000 150620000 97035000 201260000 126740000 74520000 46393000 23878000 22515000 10212 62 10483 36681;36682;36683;36684;36685;36686 55157;55158;55159;55160;55161;55162;55163;55164;55165;55166;55167;55168;55169;55170 55160 14 RNLDFQDVLDK TCHGAGRALSRAKSRRNLDFQDVLDKLADM AKSRRNLDFQDVLDKLADMGIAIRVASPKL R R N D K L 0 1 1 3 0 1 0 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 11 1 1361.6939 Q9Y3I0;B4DNA0 Q9Y3I0 441 451 RTCB tRNA-splicing ligase RtcB homolog yes no 2 0.0052451 91.658 1 0.52049 0.69054 NaN 1 Median 0.52049 0.69054 NaN 1 0 Median NaN NaN NaN 0 0 Median 1984600 1461100 523450 1984600 1461100 523450 0 0 0 10213 1819 10484 36687 55171 55171 1 RNLNNYEVEYLCDYK CRKEKLTCKSIGITKRNLNNYEVEYLCDYK RNLNNYEVEYLCDYKVVKVITSEEAERRGQ K R N Y K V 0 1 3 1 1 0 2 0 0 0 2 1 0 0 0 0 0 0 3 1 0 0 15 1 1991.9047 H0Y306;Q9H5I1 H0Y306 32 46 SUV39H2 Histone-lysine N-methyltransferase SUV39H2 yes no 3 0.01401 25.59 1 0.41106 0.52016 NaN 1 Median 0.41106 0.52016 NaN 1 0 Median NaN NaN NaN 0 0 Median 5659200 3705600 1953700 5659200 3705600 1953700 0 0 0 10214 1087 10485 36688 55172 55172 1 RNLQQELETQNQK IEILEKTTTIYEEDKRNLQQELETQNQKLQ DKRNLQQELETQNQKLQRQFSDKRRLEARL K R N Q K L 0 1 2 0 0 4 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 13 1 1627.8278 H7BYN4;Q02241 H7BYN4 587 599 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 0.00042746 113.61 2 1 0.84434 1.2786 NaN 1 Median NaN NaN NaN 0 0 Median 0.84434 1.2786 NaN 1 0 Median 9047000 5969200 3077800 2997400 2997400 0 6049700 2971900 3077800 10215 1117 10486 36689;36690;36691 55173;55174;55175;55176 55173 4 RNLYDFEVEYLCDYK CRLAKLSCPALGISKRNLYDFEVEYLCDYK RNLYDFEVEYLCDYKKIREQEYYLVKWRGY K R N Y K K 0 1 1 2 1 0 2 0 0 0 2 1 0 1 0 0 0 0 3 1 0 0 15 1 2025.9142 O43463 O43463 38 52 SUV39H1 Histone-lysine N-methyltransferase SUV39H1 yes yes 3 0.0025043 50.966 1 0.83081 1.1144 NaN 1 Median 0.83081 1.1144 NaN 1 0 Median NaN NaN NaN 0 0 Median 3292000 1972100 1319900 3292000 1972100 1319900 0 0 0 10216 1185 10487 36692 55177 55177 1 RNPDTQWITK FFEVILIDPFHKAIRRNPDTQWITKPVHKH HKAIRRNPDTQWITKPVHKHREMRGLTSAG R R N T K P 0 1 1 1 0 1 0 0 0 1 0 1 0 0 1 0 2 1 0 0 0 0 10 1 1257.6466 A0A024R2Q4;P61313;E7EQV9;E7ENU7 A0A024R2Q4 144 153 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 2 0.0043948 66.595 2 0.57405 0.98701 6.4406 2 Median NaN NaN NaN 0 0 Median 0.57405 0.98701 6.4406 2 0 Median 85810000 55513000 30297000 0 0 0 85810000 55513000 30297000 10217 92 10488 36693;36694 55178;55179;55180;55181;55182 55181 5 RNQDLAPNSAEQASILSLVTK KPAPDETSFSEALLKRNQDLAPNSAEQASI PNSAEQASILSLVTKINNVIDNLIVAPGTF K R N T K I 3 1 2 1 0 2 1 0 0 1 3 1 0 0 1 3 1 0 0 1 0 0 21 1 2254.1917 B4DY09;Q53FG3;F4ZW62;Q12905;X6R6Z1;F4ZW63;A0A0A0MRL0 B4DY09 22 42 ILF2 Interleukin enhancer-binding factor 2 yes no 3 3.5201E-12 107.83 4 1 0.91078 1.1969 21.05 5 Median 0.88066 1.1663 8.4702 4 0 Median 1.1897 1.7968 NaN 1 0 Median 68729000 35738000 32991000 61528000 32099000 29429000 7201000 3638900 3562200 10218 871 10489 36695;36696;36697;36698;36699 55183;55184;55185;55186;55187;55188;55189;55190;55191;55192;55193 55188 10 RNQSFCPTVNLDK PGYFGKVGMKHYHLKRNQSFCPTVNLDKLW LKRNQSFCPTVNLDKLWTLVSEQTRVNAAK K R N D K L 0 1 2 1 1 1 0 0 0 0 1 1 0 1 1 1 1 0 0 1 0 0 13 1 1577.762 Q9BQQ5;E9PLL6;Q6NZ52;P46776;E9PJD9 Q9BQQ5 65 77 L27a;RPL27A 60S ribosomal protein L27a yes no 2;3 3.1657E-37 183.08 8 4 0.7807 1.0336 49.421 12 Median 0.78622 1.0377 2.6288 8 0 Median 0.22557 0.38665 5.3572 4 0 Median 2502800000 1432200000 1070600000 2356500000 1313200000 1043300000 146320000 119040000 27282000 10219 1040 10490 36700;36701;36702;36703;36704;36705;36706;36707;36708;36709;36710;36711 55194;55195;55196;55197;55198;55199;55200;55201;55202;55203;55204;55205;55206;55207;55208;55209;55210;55211;55212;55213;55214;55215 55203 22 RNRPNVQVGDLIYGQFVVANK EPASLSYLSFEGATKRNRPNVQVGDLIYGQ QVGDLIYGQFVVANKDMEPEMVCIDSCGRA K R N N K D 1 2 3 1 0 2 0 2 0 1 1 1 0 1 1 0 0 0 1 4 0 0 21 2 2386.287 Q9NQT5 Q9NQT5 152 172 EXOSC3 Exosome complex component RRP40 yes yes 4 0.0029428 27.947 1 0.44293 0.53417 NaN 1 Median 0.44293 0.53417 NaN 1 0 Median NaN NaN NaN 0 0 Median 4316400 2616800 1699500 4316400 2616800 1699500 0 0 0 10220 1754 10491 36712 55216 55216 1 RNSPLTVPMFLSLFSR VTRVYSTALSSFLTKRNSPLTVPMFLSLFS NSPLTVPMFLSLFSRHPVLCQSLLPILVQH K R N S R H 0 2 1 0 0 0 0 0 0 0 3 0 1 2 2 3 1 0 0 1 0 0 16 1 1864.0029 Q9BQG0;I3L1L3;B4DE42 Q9BQG0 989 1004 MYBBP1A Myb-binding protein 1A yes no 3 0.036909 51.535 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1019700 1019700 0 1019700 1019700 0 0 0 0 10221 1708 10492 36713 55217 55217 1 RNTLQLHR FHHTIGGSRRAAWRRRNTLQLHRYR_____ RRAAWRRRNTLQLHRYR_____________ R R N H R Y 0 2 1 0 0 1 0 0 1 0 2 0 0 0 0 0 1 0 0 0 0 0 8 1 1036.589 A0A024R2Q4;P61313;B4DLP4 A0A024R2Q4 195 202 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 3 0.00066982 105.14 3 0.68306 0.9204 2.9069 3 Median 0.68306 0.9204 2.9069 3 0 Median NaN NaN NaN 0 0 Median 149080000 87720000 61364000 149080000 87720000 61364000 0 0 0 10222 92 10493 36714;36715;36716 55218;55219;55220;55221;55222 55221 5 RNTNSVPETAPAAIPETR IWHLTDKKRERMQIKRNTNSVPETAPAAIP NSVPETAPAAIPETRRNAEFLTCNIPTSNA K R N T R R 3 2 2 0 0 0 2 0 0 1 0 0 0 0 3 1 3 0 0 1 0 0 18 1 1922.981 Q59EC0;B7Z8Y3 Q59EC0 385 402 yes no 3 0.021572 49.655 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10223 1552 10494 36717 55223 55223 1 RNVESGEEELASK NWDRREPLSLINVRKRNVESGEEELASKLD RKRNVESGEEELASKLDHYKAKATRHIFLI K R N S K L 1 1 1 0 0 0 4 1 0 0 1 1 0 0 0 2 0 0 0 1 0 0 13 1 1446.6951 Q96HS1 Q96HS1 76 88 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 3.3492E-20 187.62 4 1 0.71128 0.93637 2.5516 4 Median 0.71128 0.93637 2.5516 4 0 Median NaN NaN NaN 0 0 Median 133650000 79637000 54013000 129110000 79637000 49476000 4537700 0 4537700 10224 1688 10495 36718;36719;36720;36721;36722 55224;55225;55226;55227;55228;55229;55230;55231;55232 55227 9 RNYILDQTNVYGSAQR TQCLNRLIQIAARKKRNYILDQTNVYGSAQ NYILDQTNVYGSAQRRKMRPFEGFQRKAIV K R N Q R R 1 2 2 1 0 2 0 1 0 1 1 0 0 0 0 1 1 0 2 1 0 0 16 1 1896.9442 M0R3F1;A8K3W4;A0A024R0J9;A0A0A0MRA5;B7Z4B8;A8K6U7;Q9BUJ2;A8K5K0 M0R3F1 349 364 HNRNPUL1;HNRPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 3 0.00011603 51.265 2 0.56319 0.74447 10.234 2 Median 0.56319 0.74447 10.234 2 0 Median NaN NaN NaN 0 0 Median 22845000 15577000 7267300 22845000 15577000 7267300 0 0 0 10225 39 10496 36723;36724 55233;55234;55235;55236 55234 4 RPAEDMEEEQAFK EETFPNTETNGEFGKRPAEDMEEEQAFKRS GKRPAEDMEEEQAFKRSRNTDEMVELRILL K R P F K R 2 1 0 1 0 1 4 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 13 1 1578.6984 A0A024R228;P61978;B4DUQ1;Q5EC54;Q5T6W2;B4DFF1;S4R457 A0A024R228 22 34 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 2;3 0.00023737 61.48 2 4.0037 5.9814 1.4763 2 Median NaN NaN NaN 0 0 Median 4.0037 5.9814 1.4763 2 0 Median 11979000 2714400 9264700 0 0 0 11979000 2714400 9264700 10226 77 10497 36725;36726 55237;55238 55238 44 2 RPAEGPPTNPPAPGGGSSSSK AGKEARGWGGAGRSRRPAEGPPTNPPAPGG PTNPPAPGGGSSSSKAFQLKSRLLSPLSSA R R P S K A 2 1 1 0 0 0 1 4 0 0 0 1 0 0 6 4 1 0 0 0 0 0 21 1 1946.9446 A0A087WZ13;E9PAU2 A0A087WZ13 537 557 RAVER1 yes no 3 0.029942 30.587 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10227 366 10498 36727 55239 55239 1 RPANQFVPR FPHMLFMVHPEYRPKRPANQFVPRLYGFKI PEYRPKRPANQFVPRLYGFKIHPMAYQLQL K R P P R L 1 2 1 0 0 1 0 0 0 0 0 0 0 1 2 0 0 0 0 1 0 0 9 1 1083.5938 N0E4C7;Q5SRQ6;P67870 N0E4C7 178 186 CSNK2B Casein kinase II subunit beta yes no 2;3 0.00043183 82.75 4 2 0.72733 0.95967 27.281 5 Median 0.71961 0.95952 4.0744 3 0 Median 1.1711 1.5379 1.0154 2 0 Median 47725000 28111000 19615000 42053000 25098000 16955000 5672600 3012700 2659800 10228 1162 10499 36728;36729;36730;36731;36732;36733 55240;55241;55242;55243;55244;55245 55241 6 RPAVIREPHER PKTQAKAGKVPKDRRRPAVIREPHERKILA KDRRRPAVIREPHERKILALLDALSTVHSQ R R P E R K 1 3 0 0 0 0 2 0 1 1 0 0 0 0 2 0 0 0 0 1 0 0 11 2 1358.7531 Q14692 Q14692 1195 1205 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 0.0082861 78.513 1 1.045 1.3124 NaN 1 Median 1.045 1.3124 NaN 1 0 Median NaN NaN NaN 0 0 Median 2898000 1370400 1527600 2898000 1370400 1527600 0 0 0 10229 1495 10500 36734 55246 55246 1 RPAVVYIGSAGKPHER TMPPAVERLARSYLRRPAVVYIGSAGKPHE PAVVYIGSAGKPHERVEQKVFLMSESEKRK R R P E R V 2 2 0 0 0 0 1 2 1 1 0 1 0 0 2 1 0 0 1 2 0 0 16 2 1735.9482 B3KY11;A0A024R0Z3;Q9BUQ8 B3KY11 603 618 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 4 0.031233 21.534 1 0.40332 0.4837 NaN 1 Median 0.40332 0.4837 NaN 1 0 Median NaN NaN NaN 0 0 Median 9685500 6873300 2812200 9685500 6873300 2812200 0 0 0 10230 45 10501 36735 55247 55247 0 RPDVSVQGDEVTLYTPEER DAASIAAIVALCHFRRPDVSVQGDEVTLYT SVQGDEVTLYTPEERDPVPLSIHHMPICVS R R P E R D 0 2 0 2 0 1 3 1 0 0 1 0 0 0 2 1 2 0 1 3 0 0 19 1 2189.06 B4DXG8;D6RIY6;A5PLM5;Q06265;D6RA17 B4DXG8 162 180 EXOSC9 Exosome complex component RRP45 yes no 3 0.017274 10.868 1 0.39719 0.5228 NaN 1 Median NaN NaN NaN 0 0 Median 0.39719 0.5228 NaN 1 0 Median 2338500 1526800 811700 0 0 0 2338500 1526800 811700 10231 559 10502 36736 55248 55248 1 RPDVVENQPDAASQLNVDASGNLAK RLVEPHVIVHCAAERRPDVVENQPDAASQL AASQLNVDASGNLAKEAAAVGAFLIYISSD R R P A K E 4 1 3 3 0 2 1 1 0 0 2 1 0 0 2 2 0 0 0 3 0 0 25 1 2607.2889 H7C0X7;A8K7A4;A0A140VJP2;Q9NZL9 H7C0X7 33 57 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 3 0.016303 27.89 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3955800 3955800 0 3955800 3955800 0 0 0 0 10232 500 10503 36737 55249 55249 1 RPEDTAASALQEGQTQR ATAAPHGKRKRKKKKRPEDTAASALQEGQT EDTAASALQEGQTQRQPGSPMYRREGQAQL K R P Q R Q 3 2 0 1 0 3 2 1 0 0 1 0 0 0 1 1 2 0 0 0 0 0 17 1 1856.8977 A0A024R8V6;Q9P275;A0A075B784 A0A024R8V6 851 867 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 3 0.039977 13.624 1 1.0881 1.414 NaN 1 Median NaN NaN NaN 0 0 Median 1.0881 1.414 NaN 1 0 Median 2184800 1100300 1084500 0 0 0 2184800 1100300 1084500 10233 205 10504 36738 55250 55250 1 RPEDYEAVFVGNIDDHFR GEYGSDPEERPPNLKRPEDYEAVFVGNIDD DYEAVFVGNIDDHFRIGVAILQRSIRLYAP K R P F R I 1 2 1 3 0 0 2 1 1 1 0 0 0 2 1 0 0 0 1 2 0 0 18 1 2178.013 A8K0P8;Q68CQ4;H7C2R4 A8K0P8 409 426 DIEXF Digestive organ expansion factor homolog yes no 3 0.012155 22.636 2 0.4397 0.57798 NaN 1 Median NaN NaN NaN 0 0 Median 0.4397 0.57798 NaN 1 0 Median 6663700 4963300 1700400 0 0 0 6663700 4963300 1700400 10234 577 10505 36739;36740 55251;55252 55252 2 RPELEDSTLR PATQVAQVTLQSVQRRPELEDSTLRYLQDL QSVQRRPELEDSTLRYLQDLLAWVEENQHR R R P L R Y 0 2 0 1 0 0 2 0 0 0 2 0 0 0 1 1 1 0 0 0 0 0 10 1 1214.6255 Q15149;E9PMV1 Q15149 651 660 PLEC Plectin yes no 2 0.0034025 105.98 2 0.80406 1.1114 9.8365 2 Median 0.80406 1.1114 9.8365 2 0 Median NaN NaN NaN 0 0 Median 13931000 6601000 7330000 13931000 6601000 7330000 0 0 0 10235 1507 10506 36741;36742 55253;55254;55255 55254 2 RPELLTHSTTEVTQPR EKIIQVGNRIKFVIKRPELLTHSTTEVTQP PELLTHSTTEVTQPRTNTPVKEDWNVRITK K R P P R T 0 2 0 0 0 1 2 0 1 0 2 0 0 0 2 1 4 0 0 1 0 0 16 1 1863.9803 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;B4DRA9 X5D2J9 499 514 GTF2I General transcription factor II-I yes no 3;4 8.82E-05 95.236 4 1 0.46043 0.63948 44.116 5 Median 0.43874 0.60733 15.083 4 0 Median 1.1752 1.5765 NaN 1 0 Median 46014000 28730000 17283000 40101000 26052000 14049000 5912700 2678500 3234200 10236 651 10507 36743;36744;36745;36746;36747 55256;55257;55258;55259;55260;55261 55256 6 RPENSLLEETLHFDHAVR EKKPWQLQGEVTAQKRPENSLLEETLHFDH NSLLEETLHFDHAVRMAPVITEETTLQLED K R P V R M 1 2 1 1 0 0 3 0 2 0 3 0 0 1 1 1 1 0 0 1 0 0 18 1 2162.0869 B3KPV5;O00566;U3KQ48 B3KPV5 395 412 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 4 4.1283E-09 72.421 3 2 0.90451 1.2545 6.2911 5 Median 0.94433 1.2715 1.7887 3 0 Median 0.78493 1.1664 7.5204 2 0 Median 139720000 70940000 68778000 110410000 55359000 55050000 29308000 15581000 13728000 10237 767 10508 36748;36749;36750;36751;36752 55262;55263;55264;55265;55266;55267;55268;55269;55270;55271 55271 10 RPFDPNDRCYECGEK TGMPRRSRFDRPPARRPFDPNDRCYECGEK RPFDPNDRCYECGEKGHYAYDCHRYSRRRR R R P E K G 0 2 1 2 2 0 2 1 0 0 0 1 0 1 2 0 0 0 1 0 0 0 15 2 1941.8098 A0A0B4J1Z1;B4DEK2;C9JAB2;Q16629;Q8NB80;F8WEA1 A0A0B4J1Z1 98 112 SRSF7 Serine/arginine-rich splicing factor 7 yes no 3 3.9197E-06 83.877 3 0.40845 0.50058 7.9564 3 Median 0.40845 0.50058 7.9564 3 0 Median NaN NaN NaN 0 0 Median 47886000 33311000 14576000 47886000 33311000 14576000 0 0 0 10238 414 10509 36753;36754;36755 55272;55273;55274;55275;55276;55277 55276 6 RPFGISALIVGFDFDGTPR YIASLKQRYTQSNGRRPFGISALIVGFDFD ISALIVGFDFDGTPRLYQTDPSGTYHAWKA R R P P R L 1 2 0 2 0 0 0 3 0 2 1 0 0 3 2 1 1 0 0 1 0 0 19 1 2064.0793 H0Y586;Q05DH1;A0A0K0K1K4;O14818 H0Y586 51 69 PSMA7 Proteasome subunit alpha type;Proteasome subunit alpha type-7 yes no 3 0.0057838 72.568 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10239 443 10510 36756 55278 55278 1 RPFLEPK KWILENKAGISFIIKRPFLEPKKHVGGRVM AGISFIIKRPFLEPKKHVGGRVMVTDADRS K R P P K K 0 1 0 0 0 0 1 0 0 0 1 1 0 1 2 0 0 0 0 0 0 0 7 1 885.50724 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;X5D7Q9;A0A0A0VEB4 X5D2J9 186 192 GTF2I;GTF2I-RARA General transcription factor II-I yes no 2 0.045197 98.418 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3023900 3023900 0 3023900 3023900 0 0 0 0 10240 651 10511 36757 55279 55279 1 RPFVAINYAAIR RQVCKNTLRLRQAARRPFVAINYAAIRAEC AARRPFVAINYAAIRAECKMLLNS______ R R P I R A 3 2 1 0 0 0 0 0 0 2 0 0 0 1 1 0 0 0 1 1 0 0 12 1 1389.7881 E7EQY4;E7EV10;Q9BTC8;D6W5A2;Q53QZ9 E7EQY4 494 505 MTA3;tmp_locus_6 Metastasis-associated protein MTA3 yes no 3 0.00049092 50.354 1 1 0.94749 1.268 NaN 1 Median NaN NaN NaN 0 0 Median 0.94749 1.268 NaN 1 0 Median 5793700 3144500 2649100 0 0 0 5793700 3144500 2649100 10241 1012 10512 36758;36759 55280;55281 55280 1 RPGAVATGDIGR FKGQPATHGQTKTHRRPGAVATGDIGRVWP THRRPGAVATGDIGRVWPGTKMPGK_____ R R P G R V 2 2 0 1 0 0 0 3 0 1 0 0 0 0 1 0 1 0 0 1 0 0 12 1 1168.6313 D6RC14;B4DW56;H0Y9G6;E7ETU7;B4DKM0;P09001 D6RC14 134 145 MRPL3 39S ribosomal protein L3, mitochondrial yes no 3 0.031905 46.985 1 0.3927 0.5325 NaN 1 Median 0.3927 0.5325 NaN 1 0 Median NaN NaN NaN 0 0 Median 2652600 1910600 742010 2652600 1910600 742010 0 0 0 10242 821 10513 36760 55282 55282 1 RPGEEGTVMSLAGK ITPCLALGGELVYHRRPGEEGTVMSLAGKY RRPGEEGTVMSLAGKYTLNNWLATVTLGQA R R P G K Y 1 1 0 0 0 0 2 3 0 0 1 1 1 0 1 1 1 0 0 1 0 0 14 1 1430.7188 O96008;K7EKG4 O96008 240 253 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes no 2 0.0052894 51.286 2 1.7828 2.7044 0.49519 2 Median NaN NaN NaN 0 0 Median 1.7828 2.7044 0.49519 2 0 Median 10307000 3920300 6386700 0 0 0 10307000 3920300 6386700 10243 1226 10514 36761;36762 55283;55284 55284 464 2 RPGVTGENSNEVAK PSPPAVSIASFVTVKRPGVTGENSNEVAKL KRPGVTGENSNEVAKLVNTLNTIPSLGQSP K R P A K L 1 1 2 0 0 0 2 2 0 0 0 1 0 0 1 1 1 0 0 2 0 0 14 1 1456.727 Q7Z3K3;M0R2X2 Q7Z3K3 306 319 POGZ Pogo transposable element with ZNF domain yes no 2;3 0.0054238 77.124 3 1.2701 1.6093 30.178 3 Plateau 1.2701 1.6093 30.178 3 0 Plateau NaN NaN NaN 0 0 Median 7647800 3729200 3918600 7647800 3729200 3918600 0 0 0 10244 1614 10515 36763;36764;36765 55285;55286;55287 55287 2 RPGYGAYDAFK SLFQRTAWVFDDKYKRPGYGAYDAFKHAVS DKYKRPGYGAYDAFKHAVSDPSILDSLDLN K R P F K H 2 1 0 1 0 0 0 2 0 0 0 1 0 1 1 0 0 0 2 0 0 0 11 1 1243.5986 Q53XC0;P05198;H0YJS4;G3V4T5 Q53XC0 144 154 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 2 0.04394 66.299 1 0.67028 0.91686 NaN 1 Median 0.67028 0.91686 NaN 1 0 Median NaN NaN NaN 0 0 Median 2868700 1741000 1127700 2868700 1741000 1127700 0 0 0 10245 1235 10516 36766 55288 55288 1 RPIVEFSLEDR LRLINNNPEIFGPLKRPIVEFSLEDRRKLK GPLKRPIVEFSLEDRRKLKMKELRIQRSLQ K R P D R R 0 2 0 1 0 0 2 0 0 1 1 0 0 1 1 1 0 0 0 1 0 0 11 1 1359.7147 A0A024R753;Q9NW13 A0A024R753 572 582 RBM28 RNA-binding protein 28 yes no 2;3 0.0001776 121.61 5 1.1222 1.4884 11.018 5 Median 1.1222 1.4884 11.018 5 0 Median NaN NaN NaN 0 0 Median 50070000 23113000 26957000 50070000 23113000 26957000 0 0 0 10246 169 10517 36767;36768;36769;36770;36771 55289;55290;55291;55292;55293;55294;55295 55293 7 RPLALQR GADDGSVALWGLSKKRPLALQREAHGLRGE ALWGLSKKRPLALQREAHGLRGEPGLEQPF K R P Q R E 1 2 0 0 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 7 1 852.52937 O43818 O43818 356 362 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 0.023585 77.496 1 0.54964 0.83232 NaN 1 Median NaN NaN NaN 0 0 Median 0.54964 0.83232 NaN 1 0 Median 14726000 9368900 5357300 0 0 0 14726000 9368900 5357300 10247 1188 10518 36772 55296 55296 1 RPLLGLVLTPTR QELDDKSATCKAYPKRPLLGLVLTPTRELA YPKRPLLGLVLTPTRELAVQVKQHIDAVAR K R P T R E 0 2 0 0 0 0 0 1 0 0 4 0 0 0 2 0 2 0 0 1 0 0 12 1 1334.8398 B4DKV2;G3V529;Q9GZR7;F5GYL3;B4E300;B4DM03;A0A087WXU8;Q59FS7 B4DKV2 293 304 DDX24 ATP-dependent RNA helicase DDX24 yes no 3 0.00104 69.602 5 1 0.8055 1.0592 16.99 3 Median 0.84993 1.1507 11.719 2 0 Median 0.65427 0.88999 NaN 1 0 Median 22847000 11385000 11462000 16187000 7862900 8324500 6659600 3521900 3137600 10248 822 10519 36773;36774;36775;36776;36777;36778 55297;55298;55299;55300;55301;55302;55303 55300 7 RPNKPAELIAK FVNLMKESFETFINKRPNKPAELIAKHVDS FINKRPNKPAELIAKHVDSKLRAGNKEATD K R P A K H 2 1 1 0 0 0 1 0 0 1 1 2 0 0 2 0 0 0 0 0 0 0 11 2 1235.735 Q13619;A0A0A0MR50;B2RBV7;B4DKT2;K4DI93;Q13620 Q13619 401 411 CUL4A;CUL4B Cullin-4A;Cullin-4B yes no 3 8.7832E-05 91.701 3 0.62593 0.76427 10.022 2 Median 0.62593 0.76427 10.022 2 0 Median NaN NaN NaN 0 0 Median 36566000 22127000 14440000 36566000 22127000 14440000 0 0 0 10249 1474 10520 36779;36780;36781 55304;55305;55306 55306 3 RPNLPLK LRKALTHLEMRRAARRPNLPLKVKPTLIAV LEMRRAARRPNLPLKVKPTLIAVRPPVPLP R R P L K V 0 1 1 0 0 0 0 0 0 0 2 1 0 0 2 0 0 0 0 0 0 0 7 1 836.52322 A0A024R534;O94776 A0A024R534 631 637 MTA2 Metastasis-associated protein MTA2 yes no 2 0.036832 62.978 1 0.74223 0.97549 NaN 1 Median 0.74223 0.97549 NaN 1 0 Median NaN NaN NaN 0 0 Median 21121000 12017000 9104800 21121000 12017000 9104800 0 0 0 10250 133 10521 36782 55307 55307 1 RPNNLVIGR KSDCSLFMFGSHNKKRPNNLVIGRMYDYHV GSHNKKRPNNLVIGRMYDYHVLDMIELGIE K R P G R M 0 2 2 0 0 0 0 1 0 1 1 0 0 0 1 0 0 0 0 1 0 0 9 1 1037.6094 A8K800;Q9H7B2;Q5VXN0;B4DWS5 A8K800 99 107 RPF2 Ribosome production factor 2 homolog yes no 2;3 0.0028301 98.418 2 2 0.75364 1.1186 21.611 3 Median 0.69681 0.92471 NaN 1 0 Median 0.90865 1.2618 17.031 2 0 Median 28762000 15411000 13351000 15150000 8369500 6780100 13612000 7041400 6571100 10251 637 10522 36783;36784;36785;36786 55308;55309;55310;55311 55309 4 RPPAAPENTPLVPSGVK QPLPASQTPASNQPKRPPAAPENTPLVPSG PAAPENTPLVPSGVKSWAQASVTHGAHGDG K R P V K S 2 1 1 0 0 0 1 1 0 0 1 1 0 0 5 1 1 0 0 2 0 0 17 1 1728.9523 P48634;B4DZ56 P48634 124 140 PRRC2A Protein PRRC2A yes no 3 0.00013929 80.361 4 1.3997 1.8038 27.671 3 Plateau 1.3997 1.8038 27.671 3 0 Plateau NaN NaN NaN 0 0 Median 15685000 5225300 10459000 15685000 5225300 10459000 0 0 0 10252 1348 10523 36787;36788;36789;36790 55312;55313;55314;55315 55314 4 RPPGVLHCTTK ______________________________ YFGKRPPGVLHCTTKFCDYGKAPGAEEYAQ K R P T K F 0 1 0 0 1 0 0 1 1 0 1 1 0 0 2 0 2 0 0 1 0 0 11 1 1264.671 B4DFN6;B4DI06;A0A024R1T5;P09543 B4DFN6 10 20 CNP 2,3-cyclic-nucleotide 3-phosphodiesterase yes no 3 0.0047931 72.289 2 0.37695 0.50431 NaN 1 Median 0.37695 0.50431 NaN 1 0 Median NaN NaN NaN 0 0 Median 5169200 4386400 782840 5169200 4386400 782840 0 0 0 10253 68 10524 36791;36792 55316;55317 55316 2 RPPILECLEK TMKGEEKSPKTKKDKRPPILECLEKLEKSK TKKDKRPPILECLEKLEKSKKTFLDKDAQR K R P E K L 0 1 0 0 1 0 2 0 0 1 2 1 0 0 2 0 0 0 0 0 0 0 10 1 1253.6802 Q96T23;H0YER1;H0YCN2 Q96T23 578 587 RSF1 Remodeling and spacing factor 1 yes no 2 0.027641 74.162 1 1.268 1.7006 NaN 1 Median 1.268 1.7006 NaN 1 0 Median NaN NaN NaN 0 0 Median 7315400 2434200 4881100 7315400 2434200 4881100 0 0 0 10254 1702 10525 36793 55318 55318 1 RPPILEDYVHVTSTEGVR GLTRASPAARNPVLRRPPILEDYVHVTSTE ILEDYVHVTSTEGVRAYLVLRADPMAPGVQ R R P V R A 0 2 0 1 0 0 2 1 1 1 1 0 0 0 2 1 2 0 1 3 0 0 18 1 2067.0749 E7EXA6;Q96S08;A0A0D9SF58;Q8WVB6;B4DEY3;F8WCC1;H0Y7D3 E7EXA6 170 187 CHTF18;RUVBL Chromosome transmission fidelity protein 18 homolog yes no 3 0.024167 26.146 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2568700 2568700 0 2568700 2568700 0 0 0 0 10255 433 10526 36794 55319 55319 1 RPPNSVVTQHEPAGQNEK ARLSEWKAGKGRVLKRPPNSVVTQHEPAGQ NSVVTQHEPAGQNEKPVGSFWTTMAEEDEQ K R P E K P 1 1 2 0 0 2 2 1 1 0 0 1 0 0 3 1 1 0 0 2 0 0 18 1 1986.9872 B2RMQ4;Q8WWK9 B2RMQ4 383 400 CKAP2 Cytoskeleton-associated protein 2 yes no 2;3 4.6641E-46 153.75 5 2 1.0353 1.3947 36.645 7 Median 1.1608 1.5039 43.263 5 0 Median 0.69516 1.0713 0.76074 2 0 Median 97581000 48322000 49259000 82183000 38893000 43290000 15398000 9429600 5968500 10256 745 10527 36795;36796;36797;36798;36799;36800;36801 55320;55321;55322;55323;55324;55325;55326;55327;55328;55329 55325 10 RPPPEHFR PPEDDFRHPREEDWRRPPPEHFRRPPPEHF PREEDWRRPPPEHFRRPPPEHFRRPPPEHF R R P F R R 0 2 0 0 0 0 1 0 1 0 0 0 0 1 3 0 0 0 0 0 0 0 8 1 1034.541 B9ZVT1;Q8IXT5 B9ZVT1 621 628 RBM12B RNA-binding protein 12B yes no 3 0.001412 109.71 3 0.39967 0.53995 5.5957 3 Median 0.39967 0.53995 5.5957 3 0 Median NaN NaN NaN 0 0 Median 39825000 27726000 12100000 39825000 27726000 12100000 0 0 0 10257 931 10528 36802;36803;36804 55330;55331;55332 55330 3 RPPQEHFR PPPEHFRRPPPEHFRRPPQEHFRRPPQEHF PPPEHFRRPPQEHFRRPPQEHFRRSREEDF R R P F R R 0 2 0 0 0 1 1 0 1 0 0 0 0 1 2 0 0 0 0 0 0 0 8 1 1065.5468 B9ZVT1;Q8IXT5 B9ZVT1 661 668 RBM12B RNA-binding protein 12B yes no 3 0.0067782 51.346 1 0.53674 0.68109 NaN 1 Median 0.53674 0.68109 NaN 1 0 Median NaN NaN NaN 0 0 Median 5436900 3584000 1853000 5436900 3584000 1853000 0 0 0 10258 931 10529 36805 55333 55333 1 RPPSAFFLFCSEHRPK KGDKKGKKKDPNAPKRPPSAFFLFCSEHRP PPSAFFLFCSEHRPKIKSEHPGLSIGDTAK K R P P K I 1 2 0 0 1 0 1 0 1 0 1 1 0 3 3 2 0 0 0 0 0 0 16 2 1974.9887 D6R9A6;Q5U071;P26583 D6R9A6 97 112 HMGB2 High mobility group protein B2 yes no 4 0.0078122 37.438 3 1.036 1.2734 13.172 3 Plateau 1.036 1.2734 13.172 3 0 Plateau NaN NaN NaN 0 0 Median 38589000 18509000 20080000 38589000 18509000 20080000 0 0 0 10259 988 10530 36806;36807;36808 55334;55335;55336 55335 2 RPPSAFFLFCSEYRPK KGETKKKFKDPNAPKRPPSAFFLFCSEYRP PPSAFFLFCSEYRPKIKGEHPGLSIGDVAK K R P P K I 1 2 0 0 1 0 1 0 0 0 1 1 0 3 3 2 0 0 1 0 0 0 16 2 2000.9931 Q5T7C4;B7Z965;Q59GW1;A0A024RDR0;P09429;B3KQ05 Q5T7C4 97 112 HMGB1 High mobility group protein B1 yes no 3 0.033534 25.44 1 1.0863 1.3253 NaN 1 Median 1.0863 1.3253 NaN 1 0 Median NaN NaN NaN 0 0 Median 39831000 18200000 21631000 39831000 18200000 21631000 0 0 0 10260 322 10531 36809 55337 55337 1 RPPTAGSQFK KSLFPEGNPAKINLKRPPTAGSQFKASVAT KINLKRPPTAGSQFKASVATLMKNLQTKNP K R P F K A 1 1 0 0 0 1 0 1 0 0 0 1 0 1 2 1 1 0 0 0 0 0 10 1 1087.5774 E9PDF6;B0I1S9;O43795 E9PDF6 566 575 MYO1B Unconventional myosin-Ib yes no 2 0.0058555 96.948 2 1.1013 1.4852 1.3259 2 Median 1.1013 1.4852 1.3259 2 0 Median NaN NaN NaN 0 0 Median 8043700 3823900 4219800 8043700 3823900 4219800 0 0 0 10261 665 10532 36810;36811 55338;55339;55340 55339 3 RPPVLR RAEKKAAGKGDVPTKRPPVLRAGVNTVTTL AGKGDVPTKRPPVLRAGVNTVTTLVENKKA K R P L R A 0 2 0 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 1 0 0 6 1 736.47079 P62424;Q5T8U3;Q9BY74;Q5T8U2 P62424 132 137 RPL7A;RP-L7a 60S ribosomal protein L7a yes no 2 0.021776 122.5 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 255290000 255290000 0 255290000 255290000 0 0 0 0 10262 1411 10533 36812 55341 55341 1 RPQYSNPPVQGEVMEGADNQGAGEQGRPVR RRRFPPYYMRRPYGRRPQYSNPPVQGEVME GADNQGAGEQGRPVRQNMYRGYRPRFRRGP R R P V R Q 2 3 2 1 0 4 3 5 0 0 0 0 1 0 4 1 0 0 1 3 0 0 30 2 3222.5225 H0Y449;P67809;Q6PKI6;Q7KZ24;A0JLU4;Q2VIK8;C9J5V9 H0Y449 255 284 YBX1 Nuclease-sensitive element-binding protein 1 yes no 4 1.9249E-07 43.612 2 0.67181 0.77635 4.9672 2 Median NaN NaN NaN 0 0 Median 0.67181 0.77635 4.9672 2 0 Median 15351000 9476200 5875000 0 0 0 15351000 9476200 5875000 10263 1089 10534 36813;36814 55342;55343 55343 386 2 RPRDEDDADYKPK DGYFVPPKEDIKPLKRPRDEDDADYKPKKI LKRPRDEDDADYKPKKIKTEDTKKEKKRKL K R P P K K 1 2 0 4 0 0 1 0 0 0 0 2 0 0 2 0 0 0 1 0 0 0 13 3 1603.759 P11387;B9EG90;Q6PK95;Q6NWZ5 P11387 138 150 TOP1 DNA topoisomerase 1 yes no 3 6.1546E-09 107.37 2 0.4846 0.5327 45.478 2 Median 0.4846 0.5327 45.478 2 0 Median NaN NaN NaN 0 0 Median 26221000 15376000 10846000 26221000 15376000 10846000 0 0 0 10264 1255 10535 36815;36816 55344;55345;55346 55345 3 RPSLGLAPGGLAVVGR TKKFRSAGHGRDSDKRPSLGLAPGGLAVVG PSLGLAPGGLAVVGRSAGGEPGPEAGRAAD K R P G R S 2 2 0 0 0 0 0 4 0 0 3 0 0 0 2 1 0 0 0 2 0 0 16 1 1518.8994 B9EGQ5;M0QXA7;B3KR89;O95785 B9EGQ5 659 674 WIZ Protein Wiz yes no 3 0.0013946 36.029 1 2 0.69283 0.90864 35.149 2 Median 0.56172 0.70868 NaN 1 0 Median 0.85456 1.165 NaN 1 0 Median 14821000 5940800 8880000 5091200 3027500 2063700 9729700 2913300 6816300 10265 929 10536 36817;36818;36819 55347;55348;55349 55347 3 RPSQSIASETLTK KSCPPSRKEKENTNKRPSQSIASETLTKPA NKRPSQSIASETLTKPAKQKGAGESSSRPQ K R P T K P 1 1 0 0 0 1 1 0 0 1 1 1 0 0 1 3 2 0 0 0 0 0 13 1 1416.7573 A0A1B0GUH9;A0A1P0AZG4 A0A1B0GUH9 1453 1465 yes no 2 3.0501E-12 157.97 4 2 0.77797 1.203 31.8 5 Median 0.70161 0.8873 36.603 3 0 Median 0.85984 1.3369 14.927 2 0 Median 47359000 27303000 20057000 25307000 15283000 10024000 22052000 12019000 10033000 10266 517 10537 36820;36821;36822;36823;36824;36825 55350;55351;55352;55353;55354;55355;55356;55357;55358 55352 9 RPSSLQSLFGLPEAAGAR SAPPPSNSSSSSAPRRPSSLQSLFGLPEAA SLQSLFGLPEAAGARDSRDNPLRKKKAANL R R P A R D 3 2 0 0 0 1 1 2 0 0 3 0 0 1 2 3 0 0 0 0 0 0 18 1 1855.9904 P39880 P39880 1452 1469 CUX1 Homeobox protein cut-like 1 yes yes 3 0.04444 8.3901 1 0.6184 0.81942 NaN 1 Median 0.6184 0.81942 NaN 1 0 Median NaN NaN NaN 0 0 Median 7146800 3696200 3450600 7146800 3696200 3450600 0 0 0 10267 1331 10538 36826 55359 55359 1 RPSTSEVNNVNPK TLSMAGMSESSFLSKRPSTSEVNNVNPKKP SKRPSTSEVNNVNPKKPKPSESVSGANSSA K R P P K K 0 1 3 0 0 0 1 0 0 0 0 1 0 0 2 2 1 0 0 2 0 0 13 1 1440.7321 A8K124;B4DHL1;A0A024R5W1;Q6N043;H0YLA6;H0YL38;Q9H740 A8K124 164 176 SUHW4;ZNF280D Zinc finger protein 280D yes no 2 0.013469 72.434 1 0.88911 1.1508 NaN 1 Median 0.88911 1.1508 NaN 1 0 Median NaN NaN NaN 0 0 Median 1062800 508130 554660 1062800 508130 554660 0 0 0 10268 151 10539 36827 55360 55360 1 RPTDYFAEMAK LAVLPRLHQLKVPTKRPTDYFAEMAKSDLQ VPTKRPTDYFAEMAKSDLQMQKIRQKLQTK K R P A K S 2 1 0 1 0 0 1 0 0 0 0 1 1 1 1 0 1 0 1 0 0 0 11 1 1327.6231 Q6IB29;H7C2Q8;Q99848 Q6IB29 132 142 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 0.010577 60.598 2 2 0.55979 0.96913 9.5891 3 Median 0.82411 1.1192 NaN 1 0 Median 0.5516 0.95099 2.6726 2 0 Median 117710000 72381000 45330000 10488000 3480200 7007500 107220000 68901000 38322000 10269 1123 10540;10541 36828;36829;36830;36831 55361;55362;55363;55364;55365 55362 400 4 RPTPQDSPIFLPVDDTSFR GLKKSFYGSTLFLCRRPTPQDSPIFLPVDD QDSPIFLPVDDTSFRWVESLKGILADEDSS R R P F R W 0 2 0 3 0 1 0 0 0 1 1 0 0 2 4 2 2 0 0 1 0 0 19 1 2187.096 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1403 1421 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 2.8339E-11 121.01 3 0.67351 0.92969 2.1559 3 Median 0.67351 0.92969 2.1559 3 0 Median NaN NaN NaN 0 0 Median 50669000 27669000 23000000 50669000 27669000 23000000 0 0 0 10270 486 10542 36832;36833;36834 55366;55367;55368;55369;55370 55367 5 RPVDSYDIPK AEIERETSVRIYQYRRPVDSYDIPKTEEAS IYQYRRPVDSYDIPKTEEASSGFLPGDRNK R R P P K T 0 1 0 2 0 0 0 0 0 1 0 1 0 0 2 1 0 0 1 1 0 0 10 1 1188.6139 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424;H0YDQ3 A0A1P7ZIM8 1010 1019 LMO7 LIM domain only protein 7 yes no 2 0.0054831 64.04 2 0.49471 0.6459 28.644 2 Median 0.49471 0.6459 28.644 2 0 Median NaN NaN NaN 0 0 Median 46795000 30113000 16683000 46795000 30113000 16683000 0 0 0 10271 525 10543 36835;36836 55371;55372;55373 55373 3 RPVFPPLCGDGLLSGK GDAGRMDTEEARLAKRPVFPPLCGDGLLSG PVFPPLCGDGLLSGKEETRKIPVPANRYTP K R P G K E 0 1 0 1 1 0 0 3 0 0 3 1 0 1 3 1 0 0 0 1 0 0 16 1 1711.908 B2R823;Q9NRX1;F8WBJ6 B2R823 57 72 PNO1 RNA-binding protein PNO1 yes no 3 0.0037216 54.073 3 1 0.9384 1.2032 22.333 4 Median 0.97009 1.2256 6.7264 3 0 Median 0.55225 0.81007 NaN 1 0 Median 26522000 13006000 13515000 22848000 10764000 12084000 3673200 2242300 1430900 10272 713 10544 36837;36838;36839;36840 55374;55375;55376;55377 55375 4 RPVSAMFIFSEEK KPAQEGGKGGSEKPKRPVSAMFIFSEEKRR PKRPVSAMFIFSEEKRRQLQEERPELSESE K R P E K R 1 1 0 0 0 0 2 0 0 1 0 1 1 2 1 2 0 0 0 1 0 0 13 1 1539.7755 E9PKP7;P17480;A8K962;B4DNQ1;O00164;B4DLB0 E9PKP7 372 384 UBTF Nucleolar transcription factor 1 yes no 2 0.0019899 64.55 3 0.69137 1.1158 3.4376 3 Median NaN NaN NaN 0 0 Median 0.69137 1.1158 3.4376 3 0 Median 46002000 25834000 20169000 0 0 0 46002000 25834000 20169000 10273 1039 10545 36841;36842;36843 55378;55379;55380 55380 374 3 RPYAPINANAIK RRMCRDLLQPRRAARRPYAPINANAIKAEC AARRPYAPINANAIKAECSIRLPKAAKTPL R R P I K A 3 1 2 0 0 0 0 0 0 2 0 1 0 0 2 0 0 0 1 0 0 0 12 1 1326.7408 A0A024R534;O94776 A0A024R534 481 492 MTA2 Metastasis-associated protein MTA2 yes no 2;3 1.8397E-11 155.58 8 4 0.75209 0.98038 33.313 12 Median 0.67695 0.89375 17.998 8 0 Median 1.0322 1.7583 4.4106 4 0 Linear 274840000 148650000 126200000 191780000 109690000 82094000 83062000 38959000 44103000 10274 133 10546 36844;36845;36846;36847;36848;36849;36850;36851;36852;36853;36854;36855 55381;55382;55383;55384;55385;55386;55387;55388;55389;55390;55391;55392;55393;55394;55395;55396;55397;55398 55386 18 RPYEPINSIK VSAGSDRKIKFWDLRRPYEPINSIKRFLST FWDLRRPYEPINSIKRFLSTELAWLLPYNG R R P I K R 0 1 1 0 0 0 1 0 0 2 0 1 0 0 2 1 0 0 1 0 0 0 10 1 1215.6612 Q8WUA4;Q53SY8;H0Y4Q6;H7C3X9 Q8WUA4 645 654 GTF3C2 General transcription factor 3C polypeptide 2 yes no 2 3.8552E-05 103.7 2 0.56869 0.75233 11.589 2 Median 0.56869 0.75233 11.589 2 0 Median NaN NaN NaN 0 0 Median 11691000 6355900 5335200 11691000 6355900 5335200 0 0 0 10275 1663 10547 36856;36857 55399;55400 55400 2 RPYKPIALR IRKLLSSSETKRAARRPYKPIALRQSQALP TKRAARRPYKPIALRQSQALPPRPPPPAPV R R P L R Q 1 2 0 0 0 0 0 0 0 1 1 1 0 0 2 0 0 0 1 0 0 0 9 2 1112.6818 E7ESY4;Q13330;A0A024R6P5;Q59FW1;H0Y4T7;Q9BRL8;F8W9Y9 E7ESY4 671 679 MTA1 Metastasis-associated protein MTA1 yes no 3 0.031303 56.432 1 1.0596 1.2631 NaN 1 Median 1.0596 1.2631 NaN 1 0 Median NaN NaN NaN 0 0 Median 4879900 2342300 2537500 4879900 2342300 2537500 0 0 0 10276 1014 10548 36858 55401 55401 1 RPYLGPALLLTPR GRAGAHGLSKGPLEKRPYLGPALLLTPRDR EKRPYLGPALLLTPRDRASGTQGASEDNSG K R P P R D 1 2 0 0 0 0 0 1 0 0 4 0 0 0 3 0 1 0 1 0 0 0 13 1 1465.8769 Q7Z5J4 Q7Z5J4 1466 1478 RAI1 Retinoic acid-induced protein 1 yes yes 3 0.00039699 78.763 4 2 0.62625 0.84204 21.578 5 Median 0.54334 0.75612 19.566 3 0 Median 0.71245 0.96782 19.687 2 0 Median 30747000 17789000 12959000 18342000 11866000 6476600 12405000 5922900 6482300 10277 1617 10549 36859;36860;36861;36862;36863;36864 55402;55403;55404;55405;55406;55407;55408;55409 55407 8 RQAELLEK KMSKNKKKKLKKKQKRQAELLEKRMQEIEE KLKKKQKRQAELLEKRMQEIEEMEKESGPG K R Q E K R 1 1 0 0 0 1 2 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 1 985.55564 Q96SB4;A0A024RCU9;A8K8B2;H3BLV9;D6RBF8;A0A024R704;P78362 Q96SB4 277 284 SRPK1;SRPK2 SRSF protein kinase 1;SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal no no 2 0.036486 51.346 1 0.95657 1.2437 NaN 1 Median 0.95657 1.2437 NaN 1 0 Median NaN NaN NaN 0 0 Median 14081000 7193800 6887300 14081000 7193800 6887300 0 0 0 10278 1699;166 10550 36865 55410 55410 1 RQAEQLSAAGEGGDAGR GFTQVTRKGGRRAKKRQAEQLSAAGEGGDA AEQLSAAGEGGDAGRMDTEEARLAKRPVFP K R Q G R M 4 2 0 1 0 2 2 4 0 0 1 0 0 0 0 1 0 0 0 0 0 0 17 1 1671.7925 B2R823;Q9NRX1;F8WBJ6 B2R823 30 46 PNO1 RNA-binding protein PNO1 yes no 3 6.8186E-05 62.589 1 2 0.71628 0.95031 0.29074 2 Median NaN NaN NaN 0 0 Median 0.71628 0.95031 0.29074 2 0 Median 9869300 4691500 5177800 1676200 0 1676200 8193100 4691500 3501600 10279 713 10551 36866;36867;36868 55411;55412;55413;55414 55412 4 RQAEVELASR AERLRRQVQDESQRKRQAEVELASRVKAEA ESQRKRQAEVELASRVKAEAEAAREKQRAL K R Q S R V 2 2 0 0 0 1 2 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 10 1 1157.6153 Q15149 Q15149 1648 1657 PLEC Plectin yes yes 2 0.0010731 117.02 2 0.88086 1.2049 1.2137 2 Median 0.88086 1.2049 1.2137 2 0 Median NaN NaN NaN 0 0 Median 56031000 29352000 26679000 56031000 29352000 26679000 0 0 0 10280 1507 10552 36869;36870 55415;55416;55417 55415 3 RQAQQERDELADEIANSSGK MIQLQEELAAAERAKRQAQQERDELADEIA ERDELADEIANSSGKGALALEEKRRLEARI K R Q G K G 3 2 1 2 0 3 3 1 0 1 1 1 0 0 0 2 0 0 0 0 0 0 20 2 2244.0731 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1697 1716 MYH9;FLJ00279 Myosin-9 no no 3;4 8.4645E-08 109.42 6 0.92401 1.1145 6.6948 6 Median 0.92401 1.1145 6.6948 6 0 Median NaN NaN NaN 0 0 Median 524910000 270780000 254130000 524910000 270780000 254130000 0 0 0 10281 61;490 10553 36871;36872;36873;36874;36875;36876 55418;55419;55420;55421;55422;55423;55424;55425;55426;55427;55428 55421 11 RQAVDVSPLR PREDSTRIGRAGTVRRQAVDVSPLRRVNQA AGTVRRQAVDVSPLRRVNQAIWLLCTGARE R R Q L R R 1 2 0 1 0 1 0 0 0 0 1 0 0 0 1 1 0 0 0 2 0 0 10 1 1139.6411 M0R0F0;Q53G25;A0A024R4Q8;M0R0R2;P46782;M0QZN2 M0R0F0 136 145 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 3 0.034251 54.486 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1599900 1599900 0 1599900 1599900 0 0 0 0 10282 126 10554 36877 55429 55429 1 RQAVDVSPLRR PREDSTRIGRAGTVRRQAVDVSPLRRVNQA GTVRRQAVDVSPLRRVNQAIWLLCTGAREA R R Q R R V 1 3 0 1 0 1 0 0 0 0 1 0 0 0 1 1 0 0 0 2 0 0 11 2 1295.7422 M0R0F0;Q53G25;A0A024R4Q8;M0R0R2;P46782;M0QZN2 M0R0F0 136 146 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 3 3.9534E-05 134.38 2 0.762 0.98181 10.075 2 Median 0.762 0.98181 10.075 2 0 Median NaN NaN NaN 0 0 Median 90506000 51274000 39233000 90506000 51274000 39233000 0 0 0 10283 126 10555 36878;36879 55430;55431 55430 2 RQAVTNPNNTFYATK AFTADGERLVGMPAKRQAVTNPNNTFYATK RQAVTNPNNTFYATKRLIGRRYDDPEVQKD K R Q T K R 2 1 3 0 0 1 0 0 0 0 0 1 0 1 1 0 3 0 1 1 0 0 15 1 1723.8642 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;D6RA73;D6RJI2 B7Z4V2 93 107 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2;3 4.3318E-07 128.35 8 0.4849 0.64085 8.0124 6 Median 0.4849 0.64085 8.0124 6 0 Median NaN NaN NaN 0 0 Median 84657000 55746000 28911000 84657000 55746000 28911000 0 0 0 10284 910 10556 36880;36881;36882;36883;36884;36885;36886;36887 55432;55433;55434;55435;55436;55437;55438;55439;55440;55441;55442;55443;55444;55445 55440 14 RQDEDYDEQVEESLQDEDDNDVYILTK KLEEHFKNQELRQVKRQDEDYDEQVEESLQ SLQDEDDNDVYILTKVSDILHSIFSSYKEK K R Q T K V 0 1 1 7 0 3 5 0 0 1 2 1 0 0 0 1 1 0 2 2 0 0 27 1 3302.4222 B4E0R6;A0A024RDY0;H0Y8C6;O00410;Q9BVS9;B3KWG6 B4E0R6 690 716 RANBP5;IPO5 Importin-5 yes no 3 6.0369E-06 80.944 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 685870 685870 0 685870 685870 0 0 0 0 10285 324 10557 36888 55446 55446 1 RQDSDLVQCGVTSPSSAEATGK AGKFPAGHSVIQLARRQDSDLVQCGVTSPS QCGVTSPSSAEATGKLAVDTFPARVIKHRA R R Q G K L 2 1 0 2 1 2 1 2 0 0 1 1 0 0 1 4 2 0 0 2 0 0 22 1 2292.0652 Q9HC52 Q9HC52 253 274 CBX8 Chromobox protein homolog 8 yes yes 3 9.7401E-07 97.059 4 1.0264 1.3511 44.525 2 Median 1.0264 1.3511 44.525 2 0 Median NaN NaN NaN 0 0 Median 18786000 11582000 7203800 18786000 11582000 7203800 0 0 0 10286 1750 10558 36889;36890;36891;36892 55447;55448;55449;55450;55451;55452;55453 55448 7 RQELEAELAK ELARLQREAAAATQKRQELEAELAKVRAEM AATQKRQELEAELAKVRAEMEVLLASKARA K R Q A K V 2 1 0 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 10 1 1185.6354 Q15149 Q15149 1887 1896 PLEC Plectin yes yes 2 0.0030589 95.523 2 1 0.9331 1.2223 24.379 3 Median 0.87341 1.1503 8.5884 2 0 Median 1.2009 1.7315 NaN 1 0 Median 58856000 29547000 29308000 55572000 27936000 27636000 3283500 1610900 1672700 10287 1507 10559 36893;36894;36895 55454;55455;55456;55457;55458 55456 5 RQELEQALGIR QEAVCRYFYSKVQQRRQELEQALGIRNT__ VQQRRQELEQALGIRNT_____________ R R Q I R N 1 2 0 0 0 2 2 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 11 1 1311.7259 A0A024R137;A0A024R102;Q96GM5;A8K9I5;F8VRQ4;H0YHV1 A0A024R137 586 596 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 2 0.045975 65.627 1 0.71367 0.97811 NaN 1 Median 0.71367 0.97811 NaN 1 0 Median NaN NaN NaN 0 0 Median 3848700 2017100 1831600 3848700 2017100 1831600 0 0 0 10288 47 10560 36896 55459 55459 1 RQESQQNSDQNSNLNPHVIR DARKLHKLYKHAIKKRQESQQNSDQNSNLN QNSDQNSNLNPHVIRNPDVERLKENTNHDD K R Q I R N 0 2 4 1 0 4 1 0 1 1 1 0 0 0 1 3 0 0 0 1 0 0 20 1 2363.1326 O14646;B3KT33 O14646 1504 1523 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes no 3 1.1856E-08 111.82 3 0.69863 0.90602 27.003 3 Median 0.69863 0.90602 27.003 3 0 Median NaN NaN NaN 0 0 Median 15735000 7832400 7902700 15735000 7832400 7902700 0 0 0 10289 1169 10561 36897;36898;36899 55460;55461;55462;55463 55461 3 RQFPNASLIGLTATATNHVLTDAQK GHDFRPDYKALGILKRQFPNASLIGLTATA LTATATNHVLTDAQKILCIEKCFTFTASFN K R Q Q K I 4 1 2 1 0 2 0 1 1 1 3 1 0 1 1 1 4 0 0 1 0 0 25 1 2666.414 A0A024RAV2;P46063 A0A024RAV2 243 267 RECQL ATP-dependent DNA helicase Q1 yes no 3 0.00026989 84.674 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10290 250 10562 36900 55464 55464 1 RQGRTLYGFGG KRKTVTAMDVVYALKRQGRTLYGFGG____ YALKRQGRTLYGFGG_______________ K R Q G G - 0 2 0 0 0 1 0 4 0 0 1 0 0 1 0 0 1 0 1 0 0 0 11 2 1210.6207 B2R4R0;P62805;Q0VAS5 B2R4R0 93 103 HIST1H4H;HIST1H4A Histone H4 yes no 3 0.039867 26.012 1 0.67326 0.91222 NaN 1 Median 0.67326 0.91222 NaN 1 0 Median NaN NaN NaN 0 0 Median 201770000 115830000 85935000 201770000 115830000 85935000 0 0 0 10291 686 10563 36901 55465 55465 1 RQIQAAYSILSEVQQAVSQGSSDSQILDLSNR YEIDLQKMPLGKLSKRQIQAAYSILSEVQQ SQGSSDSQILDLSNRFYTLIPHDFGMKKPP K R Q N R F 3 2 1 2 0 6 1 1 0 3 3 0 0 0 0 7 0 0 1 2 0 0 32 1 3490.7652 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 704 735 PARP1 Poly [ADP-ribose] polymerase 1 yes no 3 8.947E-90 155.58 4 1 0.59238 0.85333 45.766 4 Median 0.92311 1.2615 48.162 3 0 Plateau 0.38549 0.59107 NaN 1 0 Median 267970000 146140000 121840000 215410000 108910000 106500000 52565000 37230000 15335000 10292 107 10564 36902;36903;36904;36905;36906 55466;55467;55468;55469;55470;55471 55470 6 RQLEEAEEEAQR KDQADKASTRLKQLKRQLEEAEEEAQRANA QLKRQLEEAEEEAQRANASRRKLQRELEDA K R Q Q R A 2 2 0 0 0 2 5 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 12 1 1486.7012 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1877 1888 MYH9;FLJ00279 Myosin-9 no no 2;3 2.6305E-36 188.27 8 2 0.9276 1.2674 6.7498 8 Median 0.9276 1.2674 6.7498 8 0 Median NaN NaN NaN 0 0 Median 594300000 292030000 302280000 565610000 292030000 273580000 28695000 0 28695000 10293 61;490 10565 36907;36908;36909;36910;36911;36912;36913;36914;36915;36916 55472;55473;55474;55475;55476;55477;55478;55479;55480;55481;55482;55483 55479 11 RQLEEAEEEAQRANASR KDQADKASTRLKQLKRQLEEAEEEAQRANA LEEAEEEAQRANASRRKLQRELEDATETAD K R Q S R R 4 3 1 0 0 2 5 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 17 2 1985.9515 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1877 1893 MYH9;FLJ00279 Myosin-9 no no 3 0.0016449 76.341 2 1.0063 1.2654 16.015 2 Median 1.0063 1.2654 16.015 2 0 Median NaN NaN NaN 0 0 Median 21490000 11099000 10392000 21490000 11099000 10392000 0 0 0 10294 61;490 10566 36917;36918 55484;55485;55486 55484 3 RQLEEQEEALR QKMLEELNKQIEEQKRQLEEQEEALRQQRA EEQKRQLEEQEEALRQQRAAVGVSMAHFSV K R Q L R Q 1 2 0 0 0 2 4 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 11 1 1399.7056 Q9BTC0 Q9BTC0 1491 1501 DIDO1 Death-inducer obliterator 1 yes yes 2 0.0074552 100.72 1 2 0.67512 0.99911 2.4247 2 Median NaN NaN NaN 0 0 Median 0.67512 0.99911 2.4247 2 0 Median 31736000 20590000 11146000 5272600 5272600 0 26463000 15318000 11146000 10295 1713 10567 36919;36920;36921 55487;55488;55489;55490 55490 4 RQLETLGQEK SNMDNMFESYINNLRRQLETLGQEKLKLEA INNLRRQLETLGQEKLKLEAELGNMQGLVE R R Q E K L 0 1 0 0 0 2 2 1 0 0 2 1 0 0 0 0 1 0 0 0 0 0 10 1 1200.6463 CON__P05787;P05787;Q969I0;F8VUG2;CON__H-INV:HIT000292931;F8VP67;CON__Q9H552;F8W1U3 CON__P05787 149 158 KRT8 Keratin, type II cytoskeletal 8 no no 2 1.1163E-06 144.77 4 1 0.17753 0.2307 114.76 5 Median 0.16763 0.22197 19.301 4 0 Median 1.8189 2.8275 NaN 1 0 Median 81141000 61013000 20127000 70080000 57143000 12937000 11061000 3870500 7190400 + 10296 955;1068 10568 36922;36923;36924;36925;36926 55491;55492;55493;55494;55495;55496 55493 6 RQLSLDINKLPGEK SEEEEESRPMSYDEKRQLSLDINKLPGEKL KRQLSLDINKLPGEKLGRVVHIIQAREPSL K R Q E K L 0 1 1 1 0 1 1 1 0 1 3 2 0 0 1 1 0 0 0 0 0 0 14 2 1609.9152 O60885;A0A024R7H8;A0A024RCR5;A0A0G2JK44;P25440;H0Y6K2;A0A140T9E9;X5CF57;A0A0G2JHN8;A0A140T9I1 A0A024RCR5 648 661 BRD4;BRD2 Bromodomain-containing protein 4;Bromodomain-containing protein 2 no no 3 0.00021055 98.676 2 0.73648 0.89879 2.3563 2 Median 0.73648 0.89879 2.3563 2 0 Median NaN NaN NaN 0 0 Median 21421000 11757000 9664000 21421000 11757000 9664000 0 0 0 10297 300;1194 10569 36927;36928 55497;55498 55497 2 RQNGDDPLLTYR NKSNEDQSMGNWQIKRQNGDDPLLTYRFPP QIKRQNGDDPLLTYRFPPKFTLKAGQVVTI K R Q Y R F 0 2 1 2 0 1 0 1 0 0 2 0 0 0 1 0 1 0 1 0 0 0 12 1 1446.7215 P02545;W8QEH3;Q5TCI8;B4DFR3;A0A0C4DGC5 P02545 471 482 LMNA Prelamin-A/C;Lamin-A/C yes no 2;3 4.1062E-06 139.31 5 1 0.60379 0.81042 66.783 5 Median 0.59414 0.79887 11.131 4 0 Median 2.7307 3.6703 NaN 1 0 Median 110070000 64201000 45870000 105070000 63077000 41989000 5005000 1124500 3880500 10298 1229 10570 36929;36930;36931;36932;36933;36934 55499;55500;55501;55502;55503;55504;55505;55506 55499 8 RQNIGVATFIGLDK VDSIDIAQECVNFLKRQNIGVATFIGLDKM KRQNIGVATFIGLDKMAVWAKKMTEIQTPE K R Q D K M 1 1 1 1 0 1 0 2 0 2 1 1 0 1 0 0 1 0 0 1 0 0 14 1 1530.8518 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 660 673 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 1.8338E-09 140.01 8 6 0.6618 0.89002 16.285 14 Median 0.6618 0.87125 6.7385 8 0 Median 0.67554 1.0579 20.637 6 0 Median 364430000 214180000 150250000 296600000 173830000 122770000 67829000 40348000 27481000 10299 1760 10571 36935;36936;36937;36938;36939;36940;36941;36942;36943;36944;36945;36946;36947;36948 55507;55508;55509;55510;55511;55512;55513;55514;55515;55516;55517;55518;55519;55520;55521;55522;55523;55524;55525;55526;55527;55528;55529;55530;55531 55517 24 RQPQEEVVHEDQGK KSSDREGTRAGEEERRQPQEEVVHEDQGKK RRQPQEEVVHEDQGKKPQDQLVIERERKWE R R Q G K K 0 1 0 1 0 3 3 1 1 0 0 1 0 0 1 0 0 0 0 2 0 0 14 1 1677.8071 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424;H0YDQ3 A0A1P7ZIM8 937 950 LMO7 LIM domain only protein 7 yes no 2;3 9.1121E-34 201.3 5 1 0.48775 0.65124 11.833 5 Median 0.48775 0.65124 11.833 5 0 Median NaN NaN NaN 0 0 Median 80877000 55273000 25604000 80471000 55273000 25198000 405930 0 405930 10300 525 10572 36949;36950;36951;36952;36953;36954 55532;55533;55534;55535;55536;55537;55538;55539;55540 55535 9 RQQEQQVPILEK GGVHISGLHTESAPRRQQEQQVPILEKFCF APRRQQEQQVPILEKFCFTPHTEEGCLSER R R Q E K F 0 1 0 0 0 4 2 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 12 1 1494.8154 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1105 1116 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0021961 69.349 3 0.67891 0.91581 NaN 1 Median 0.67891 0.91581 NaN 1 0 Median NaN NaN NaN 0 0 Median 8835100 2089600 6745500 8835100 2089600 6745500 0 0 0 10301 486 10573 36955;36956;36957 55541;55542;55543;55544 55543 4 RQQEVETELK ______________________________ EKIERRQQEVETELKMWDPHNDPNAQGDAF R R Q L K M 0 1 0 0 0 2 3 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 10 1 1258.6517 M0QYR1;A8KAQ5;A0A024QZD5;P08621;M0QX04 M0QYR1 12 21 SNRNP70;SNRP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 2 0.0060195 96.342 1 1 0.33321 0.45185 NaN 1 Median 0.33321 0.45185 NaN 1 0 Median NaN NaN NaN 0 0 Median 6595900 2213800 4382100 3275500 2213800 1061700 3320400 0 3320400 10302 10 10574 36958;36959 55545;55546 55545 2 RQQHQEEEDILDVRDEK SRACSDGRSRKSKKKRQQHQEEEDILDVRD QHQEEEDILDVRDEKDGGAREAESRAHTGS K R Q E K D 0 2 0 3 0 3 4 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 17 2 2166.0301 Q5T3I0;A8KAG1 Q5T3I0 382 398 GPATCH4 G patch domain-containing protein 4 yes no 4 0.00016222 65.652 2 0.78784 0.9572 2.4674 2 Median 0.78784 0.9572 2.4674 2 0 Median NaN NaN NaN 0 0 Median 28296000 16391000 11905000 28296000 16391000 11905000 0 0 0 10303 1568 10575 36960;36961 55547;55548;55549 55548 3 RQQPGIELPETELSLR EKRRQQHRSRRSLRRRQQPGIELPETELSL QQPGIELPETELSLRVGKDQRRNNEELVVS R R Q L R V 0 2 0 0 0 2 3 1 0 1 3 0 0 0 2 1 1 0 0 0 0 0 16 1 1865.0007 B4DES6;B7Z9P6;G3XAG1;Q96ME7;Q658M0 B4DES6 402 417 ZNF512;DKFZp666L156 Zinc finger protein 512 yes no 3 0.047519 13.627 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2631000 2631000 0 0 0 0 2631000 2631000 0 10304 799 10576 36962 55550 55550 1 RQQQEEEDLNLEDRGEETVLGGGTR VESRAYADPCSRRKKRQQQEEEDLNLEDRG LEDRGEETVLGGGTREAESRACSDGRSRKS K R Q T R E 0 3 1 2 0 3 6 4 0 0 3 0 0 0 0 0 2 0 0 1 0 0 25 2 2857.3438 Q5T3I0;A8KAG1 Q5T3I0 339 363 GPATCH4 G patch domain-containing protein 4 yes no 3;4 1.6369E-20 83.312 5 2 0.80044 1.0204 16.677 6 Median 0.8894 1.149 11.377 4 0 Median 0.72177 0.83408 1.4383 2 0 Median 227210000 115720000 111490000 150760000 71727000 79036000 76447000 43990000 32457000 10305 1568 10577 36963;36964;36965;36966;36967;36968;36969 55551;55552;55553;55554;55555;55556;55557;55558;55559;55560;55561 55559 11 RQSLELQK AEVDELVLQTKRSSRRQSLELQKCEEILHK QTKRSSRRQSLELQKCEEILHKIVKYRFSW R R Q Q K C 0 1 0 0 0 2 1 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 8 1 1000.5665 Q9UIG0 Q9UIG0 1340 1347 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.0039921 83.206 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12360000 0 12360000 12360000 0 12360000 0 0 0 10306 1786 10578 36970 55562 55562 1 RQVDQLTNDK SRLGDLYEEEMRELRRQVDQLTNDKARVEV MRELRRQVDQLTNDKARVEVERDNLAEDIM R R Q D K A 0 1 1 2 0 2 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 10 1 1215.6208 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;A0A1B0GUA0 V9HWE1 159 168 HEL113;VIM Vimentin yes no 2 0.00047243 72.643 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10307 1245 10579 36971 55563 55563 1 RQVLEGEEIAYK NNSDKDQSLGNWRIKRQVLEGEEIAYKFTP RIKRQVLEGEEIAYKFTPKYILRAGQMVTV K R Q Y K F 1 1 0 0 0 1 3 1 0 1 1 1 0 0 0 0 0 0 1 1 0 0 12 1 1433.7514 Q03252;A0A0A7M1X5 Q03252 505 516 LMNB2 Lamin-B2 yes no 2 0.0023049 58.37 1 1.4092 1.834 NaN 1 Median 1.4092 1.834 NaN 1 0 Median NaN NaN NaN 0 0 Median 12778000 5233700 7543900 12778000 5233700 7543900 0 0 0 10308 1440 10580 36972 55564;55565 55565 2 RQVLIRPCSK ADALKSINNAEKRGKRQVLIRPCSKVIVRF EKRGKRQVLIRPCSKVIVRFLTVMMKHGYI K R Q S K V 0 2 0 0 1 1 0 0 0 1 1 1 0 0 1 1 0 0 0 1 0 0 10 2 1255.7183 B2R4W8;P62244;I3L3P7;A8K7H3;I3L246;H3BN98;H3BV27;H3BT37;I3L303 B2R4W8 23 32 hCG_1994130;RPS15A 40S ribosomal protein S15a yes no 3 2.7429E-05 112.85 3 0.80562 1.048 9.7859 3 Median 0.80562 1.048 9.7859 3 0 Median NaN NaN NaN 0 0 Median 191610000 105900000 85716000 191610000 105900000 85716000 0 0 0 10309 688 10581 36973;36974;36975 55566;55567;55568;55569;55570;55571 55570 6 RQVLLSAAEAAEVILR GDMAILGITESFQVKRQVLLSAAEAAEVIL QVLLSAAEAAEVILRVDNIIKAAPRKRVPD K R Q L R V 4 2 0 0 0 1 2 0 0 1 3 0 0 0 0 1 0 0 0 2 0 0 16 1 1738.0101 V9HW96;P78371;B7Z4R3;Q9H369 V9HW96 501 516 HEL-S-100n;CCT2 T-complex protein 1 subunit beta yes no 3 6.4445E-06 100.77 1 0.37185 0.48986 NaN 1 Median 0.37185 0.48986 NaN 1 0 Median NaN NaN NaN 0 0 Median 1468000 795110 672880 1468000 795110 672880 0 0 0 10310 1426 10582 36976 55572;55573 55572 2 RQVQNLVNK IKELEKEREKILEYKRQVQNLVNKSKKIVQ KILEYKRQVQNLVNKSKKIVQLKPRNPDYR K R Q N K S 0 1 2 0 0 2 0 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 9 1 1097.6305 P15924;Q4LE79;B4E2A0;B4DKX6;B4DWT7 P15924 433 441 DSP;DSP variant protein Desmoplakin yes no 2 0.018128 87.323 2 0.21703 0.26924 NaN 1 Median 0.21703 0.26924 NaN 1 0 Median NaN NaN NaN 0 0 Median 2469500 2068100 401370 2469500 2068100 401370 0 0 0 10311 1270 10583 36977;36978 55574;55575 55575 2 RQVQSLTCEVDALK NDALRQAKQESTEYRRQVQSLTCEVDALKG RRQVQSLTCEVDALKGTNESLERQMREMEE R R Q L K G 1 1 0 1 1 2 1 0 0 0 2 1 0 0 0 1 1 0 0 2 0 0 14 1 1645.8458 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;B0YJC5;Q5JVS8 V9HWE1 321 334 HEL113;VIM Vimentin yes no 2;3 0.00051523 100.38 6 0.68174 0.87366 17.281 4 Median 0.68174 0.87366 17.281 4 0 Median NaN NaN NaN 0 0 Median 20487000 12321000 8165500 20487000 12321000 8165500 0 0 0 10312 1245 10584 36979;36980;36981;36982;36983;36984 55576;55577;55578;55579;55580;55581;55582 55579 7 RQVSASELHTSGILGPETLR ETEERLSKVSFRGLRRQVSASELHTSGILG SELHTSGILGPETLRDLAQGTKTLQEVTEM R R Q L R D 1 2 0 0 0 1 2 2 1 1 3 0 0 0 1 3 2 0 0 1 0 0 20 1 2150.1444 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 2715 2734 EPPK1 Epiplakin no no 3;4 0.0011617 29.766 1 1 0.67945 0.89223 NaN 1 Median 0.67945 0.89223 NaN 1 0 Median NaN NaN NaN 0 0 Median 13173000 7680300 5493000 10761000 7680300 3080300 2412700 0 2412700 10313 373;1386 10585 36985;36986 55583;55584 55583 2 RQYELLK KKDKEVIQLKERDRKRQYELLKLERNFQKQ QLKERDRKRQYELLKLERNFQKQSNVLRRK K R Q L K L 0 1 0 0 0 1 1 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 7 1 948.53927 Q59HG1;O95239;Q6PKB2;Q2VIQ3 Q59HG1 685 691 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.018742 93.561 1 2 0.73995 1.3108 12 3 Plateau 0.79612 1.0402 NaN 1 0 Median 0.7382 1.2721 4.2438 2 0 Median 135650000 75971000 59682000 34096000 18864000 15232000 101560000 57107000 44450000 10314 1216 10586 36987;36988;36989 55585;55586;55587 55587 3 RREEGPAETVGSEASDTVEGVLPSK TERPLKGIQSRLRKKRREEGPAETVGSEAS GSEASDTVEGVLPSKQEPENDQGVVSQAGK K R R S K Q 2 2 0 1 0 0 5 3 0 0 1 1 0 0 2 3 2 0 0 3 0 0 25 2 2599.2726 Q9BTC0 Q9BTC0 192 216 DIDO1 Death-inducer obliterator 1 yes yes 4 0.010832 19.492 2 0.72175 0.87894 11.043 2 Median 0.72175 0.87894 11.043 2 0 Median NaN NaN NaN 0 0 Median 22412000 13789000 8622700 22412000 13789000 8622700 0 0 0 10315 1713 10587 36990;36991 55588;55589;55590 55588 3 RREEGPPPPSPDGASSDAEPEPPSGR ______________________________ DGASSDAEPEPPSGRTESPATAAETASEEL R R R G R T 2 3 0 2 0 0 4 3 0 0 0 0 0 0 8 4 0 0 0 0 0 0 26 2 2670.227 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9JWF0;C9IYK2;C9JJ64;F8WCB7 Q9NTJ3 13 38 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3;4 1.467E-09 57.945 6 0.57213 0.70451 19.708 6 Median 0.57213 0.70451 19.708 6 0 Median NaN NaN NaN 0 0 Median 80689000 48150000 32539000 80689000 48150000 32539000 0 0 0 10316 1760 10588 36992;36993;36994;36995;36996;36997 55591;55592;55593;55594;55595;55596;55597;55598;55599 55596 9 RREELFIEQK ETVRRDKTLLKEKRKRREELFIEQKKRKLL KEKRKRREELFIEQKKRKLLPDTILEKLTT K R R Q K K 0 2 0 0 0 1 3 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 10 2 1346.7306 A0A024QZW2;Q9UMY1;H7C2B1 A0A024QZW2 100 109 NOL7 Nucleolar protein 7 yes no 3 0.0026274 64.82 2 0.86209 1.0544 15.923 2 Median 0.86209 1.0544 15.923 2 0 Median NaN NaN NaN 0 0 Median 72686000 36685000 36001000 72686000 36685000 36001000 0 0 0 10317 21 10589 36998;36999 55600;55601 55601 2 RSAAEMYGSSFDLDYDFQR LAAEPKVNRGKAGVKRSAAEMYGSSFDLDY EMYGSSFDLDYDFQRDYYDRMYSYPARVPP K R S Q R D 2 2 0 3 0 1 1 1 0 0 1 0 1 2 0 3 0 0 2 0 0 0 19 1 2256.9746 B2R5W2;G3V4C1;G3V4W0;B4DY08;B3KX96;G3V2D6;G3V5X6;G3V3K6;G3V251 B2R5W2 99 117 HNRNPC yes no 3 6.5495E-07 63.706 3 1 0.67854 0.95216 30.958 4 Median 0.64188 0.85169 37.343 3 0 Median 0.71731 1.0645 NaN 1 0 Median 48930000 26832000 22098000 26417000 15166000 11251000 22513000 11666000 10847000 10318 694 10590 37000;37001;37002;37003 55602;55603;55604;55605 55605 246 2 RSCTLPNYTK KRKLSEQEELKKKPRRSCTLPNYTKGSGDV KKKPRRSCTLPNYTKGSGDVLGKIAHLAQI R R S T K G 0 1 1 0 1 0 0 0 0 0 1 1 0 0 1 1 2 0 1 0 0 0 10 1 1238.6078 A6NHR9;J3KTL8 A6NHR9 1708 1717 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.033594 72.243 1 0.66073 0.91196 NaN 1 Median 0.66073 0.91196 NaN 1 0 Median NaN NaN NaN 0 0 Median 2591900 1314100 1277900 2591900 1314100 1277900 0 0 0 10319 568 10591 37004 55606 55606 1 RSEKPPAGSICR ESSEGGERGDALSQKRSEKPPAGSICRAEP SQKRSEKPPAGSICRAEPEAGEEQAGDDRD K R S C R A 1 2 0 0 1 0 1 1 0 1 0 1 0 0 2 2 0 0 0 0 0 0 12 2 1356.6932 Q6PJJ2;P56182;B4DZM3;Q53FR7;Q96J73 Q6PJJ2 269 280 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 3 7.7904E-10 121.21 4 0.77336 0.95139 6.4928 4 Median 0.77336 0.95139 6.4928 4 0 Median NaN NaN NaN 0 0 Median 120270000 68106000 52165000 120270000 68106000 52165000 0 0 0 10320 1381 10592 37005;37006;37007;37008 55607;55608;55609;55610;55611;55612;55613 55610 7 RSELSQDAEPAGSQETK EILLREFEERRSLRKRSELSQDAEPAGSQE ELSQDAEPAGSQETKDSGSQEVLSELRVLS K R S T K D 2 1 0 1 0 2 3 1 0 0 1 1 0 0 1 3 1 0 0 0 0 0 17 1 1831.8548 Q9BVJ6;B4E343;X6RJY0 Q9BVJ6 433 449 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2;3 2.77E-106 247.9 9 4 0.96785 1.2931 7.754 12 Median 1.0699 1.4137 8.2542 8 0 Median 0.78587 1.3051 2.7224 4 0 Linear 268280000 134510000 133780000 173820000 81817000 92003000 94463000 52691000 41772000 10321 1719 10593 37009;37010;37011;37012;37013;37014;37015;37016;37017;37018;37019;37020;37021 55614;55615;55616;55617;55618;55619;55620;55621;55622;55623;55624;55625;55626;55627;55628;55629;55630;55631 55617 18 RSFIPSLVEK GDVMIHPVTNRPADKRSFIPSLVEKEKVSR RPADKRSFIPSLVEKEKVSRMVHAIKMGWI K R S E K E 0 1 0 0 0 0 1 0 0 1 1 1 0 1 1 2 0 0 0 1 0 0 10 1 1174.671 B2RDN4;Q14137;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9;A0A075B729 B2RDN4 244 253 BOP1 Ribosome biogenesis protein BOP1 yes no 2 0.00094256 81.338 1 0.82997 1.0774 NaN 1 Median 0.82997 1.0774 NaN 1 0 Median NaN NaN NaN 0 0 Median 29030000 16253000 12777000 29030000 16253000 12777000 0 0 0 10322 738 10594 37022 55632;55633 55633 2 RSFSSQRPVDR KVGENVLPPKREIAKRSFSSQRPVDRQNRR EIAKRSFSSQRPVDRQNRRGNNGPPKSGRN K R S D R Q 0 3 0 1 0 1 0 0 0 0 0 0 0 1 1 3 0 0 0 1 0 0 11 2 1333.6851 E7EPN9;Q9Y520;H7C5N8 E7EPN9 1543 1553 PRRC2C Protein PRRC2C yes no 3 0.017203 69.672 1 0.61664 0.77256 NaN 1 Median 0.61664 0.77256 NaN 1 0 Median NaN NaN NaN 0 0 Median 2716800 1565700 1151100 2716800 1565700 1151100 0 0 0 10323 1010 10595 37023 55634 55634 1 RSFVPEEEK PKKIPIRNTRTRGRKRSFVPEEEKHEERVP RTRGRKRSFVPEEEKHEERVPRERRQRQSV K R S E K H 0 1 0 0 0 0 3 0 0 0 0 1 0 1 1 1 0 0 0 1 0 0 9 1 1119.556 A0A0U1RRH6;O94880;B4DG57 A0A0U1RRH6 834 842 PHF14 PHD finger protein 14 yes no 2 0.0042738 84.213 3 1 0.78788 1.0608 24.977 4 Median 0.75123 1.0089 11.223 3 0 Median 1.0241 1.5932 NaN 1 0 Median 24181000 13057000 11124000 16472000 9201600 7270500 7709100 3855100 3854000 10324 487 10596 37024;37025;37026;37027 55635;55636;55637;55638;55639 55637 5 RSGASAAPAASAAAALAPSATR RRSRSSAAAKLRGQKRSGASAAPAASAAAA PAASAAAALAPSATRTRRSASQAGSKSQAV K R S T R T 11 2 0 0 0 0 0 1 0 0 1 0 0 0 2 4 1 0 0 0 0 0 22 1 1925.0079 A0A0M3HER2 A0A0M3HER2 17 38 yes yes 3 2.6697E-30 139.55 4 2 1.0922 1.5455 6.6794 6 Median 1.1365 1.5527 8.2245 4 0 Median 0.97286 1.5439 3.4622 2 0 Median 293770000 139260000 154510000 167350000 74875000 92470000 126430000 64385000 62042000 10325 444 10597 37028;37029;37030;37031;37032;37033 55640;55641;55642;55643;55644;55645;55646;55647;55648;55649;55650 55644 11 RSGASEANLIVAK SRSQHDILQMICSKRRSGASEANLIVAKSW KRRSGASEANLIVAKSWADVVKLGAKQTQT R R S A K S 3 1 1 0 0 0 1 1 0 1 1 1 0 0 0 2 0 0 0 1 0 0 13 1 1314.7256 P46013;Q70L73 P46013 647 659 MKI67 Antigen KI-67 no no 2;3 0.00024825 59.542 4 2 0.79176 1.0792 11.133 5 Median 0.83023 1.0792 5.9823 3 0 Plateau 0.78839 1.2106 7.7136 2 0 Median 36827000 19621000 17206000 23162000 12470000 10692000 13665000 7151200 6513500 10326 1342;1604 10598 37034;37035;37036;37037;37038;37039 55651;55652;55653;55654;55655;55656;55657;55658 55654 8 RSGASGASAAPAASAAAALAPSATR RRSRSSAAAKLRGQKRSGASGASAAPAASA PAASAAAALAPSATRTRRSASQAGSKSQAV K R S T R T 12 2 0 0 0 0 0 2 0 0 1 0 0 0 2 5 1 0 0 0 0 0 25 1 2140.0985 Q7Z7K6 Q7Z7K6 17 41 CENPV Centromere protein V yes yes 3 1.34E-28 100.81 4 2 1.0522 1.4291 14.571 6 Median 1.1326 1.5493 8.5542 4 0 Median 0.71576 1.1736 3.1008 2 0 Median 546180000 276450000 269720000 285420000 122920000 162500000 260760000 153530000 107230000 10327 1619 10599 37040;37041;37042;37043;37044;37045 55659;55660;55661;55662;55663;55664;55665;55666;55667;55668;55669 55665 11 RSGVDGPHFPLSLSTCLFGR ______________________________ GPHFPLSLSTCLFGRGIECDIRIQLPVVSK K R S G R G 0 2 0 1 1 0 0 3 1 0 3 0 0 2 2 3 1 0 0 1 0 0 20 1 2202.1004 P46013;Q70L72;Q70L73 P46013 12 31 MKI67 Antigen KI-67 no no 3;4 1.7824E-06 64.705 8 4 0.85587 1.1762 16.962 11 Median 0.83637 1.148 9.4656 7 0 Median 1.0023 1.5181 11.26 4 0 Median 363770000 184330000 179440000 258620000 133740000 124890000 105150000 50599000 54554000 10328 1342;1604 10600 37046;37047;37048;37049;37050;37051;37052;37053;37054;37055;37056;37057 55670;55671;55672;55673;55674;55675;55676;55677;55678;55679;55680;55681;55682;55683;55684;55685;55686;55687;55688;55689;55690;55691;55692;55693 55679 24 RSIQEELQQLR VVRREEAAVDAQQQKRSIQEELQQLRQSSE QQQKRSIQEELQQLRQSSEAEIQAKARQAE K R S L R Q 0 2 0 0 0 3 2 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 11 1 1398.7579 Q15149 Q15149 1553 1563 PLEC Plectin yes yes 3 5.535E-07 112.15 4 2 0.93639 1.2861 4.4823 6 Median 0.91564 1.2453 3.8559 4 0 Median 1.0124 1.3362 2.982 2 0 Median 78623000 37671000 40952000 71876000 35025000 36850000 6747800 2645700 4102100 10329 1507 10601 37058;37059;37060;37061;37062;37063 55694;55695;55696;55697;55698;55699;55700;55701;55702 55699 9 RSLDPADERDDVLAK MDRMTEDALRLNLLKRSLDPADERDDVLAK RSLDPADERDDVLAKRLKMEGHEAMERLKM K R S A K R 2 2 0 4 0 0 1 0 0 0 2 1 0 0 1 1 0 0 0 1 0 0 15 2 1698.8537 A0A0U1RRM1;Q8WXI9;B3KSZ4;A0A0U1RR34;A0A0U1RRK3 A0A0U1RRM1 16 30 GATAD2B Transcriptional repressor p66-beta yes no 3 0.04656 30.133 1 1.105 1.7332 NaN 1 Median NaN NaN NaN 0 0 Median 1.105 1.7332 NaN 1 0 Median 5396700 2696500 2700300 0 0 0 5396700 2696500 2700300 10330 488 10602 37064 55703 55703 0 RSLEGGNFIAGVLIQGTQER GTTTVKEVAEMDSVKRSLEGGNFIAGVLIQ GNFIAGVLIQGTQERMSIPEALRRHILRPG K R S E R M 1 2 1 0 0 2 2 4 0 2 2 0 0 1 0 1 1 0 0 1 0 0 20 1 2144.1338 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 1565 1584 EPPK1 Epiplakin no no 3 0.031217 13.367 1 0.63204 0.79441 NaN 1 Median 0.63204 0.79441 NaN 1 0 Median NaN NaN NaN 0 0 Median 3746300 1778500 1967800 3746300 1778500 1967800 0 0 0 10331 373;1386 10603 37065 55704 55704 1 RSLGYAYVNFQQPADAER GPVLSIRVCRDMITRRSLGYAYVNFQQPAD GYAYVNFQQPADAERALDTMNFDVIKGKPI R R S E R A 3 2 1 1 0 2 1 1 0 0 1 0 0 1 1 1 0 0 2 1 0 0 18 1 2084.0076 A0A087WTT1;A0A024R9C1;P11940;A0A024R9E2;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;B3KT93;H0YBN4;E5RGH3;E5RJB9;E5RH24;E5RHG7;B1ANR0;Q6IQ30;Q13310;B1ANR1 B1ANR0 50 67 PABPC1;PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 no no 3 0.00041344 56.748 2 0.20042 0.2777 NaN 1 Median 0.20042 0.2777 NaN 1 0 Median NaN NaN NaN 0 0 Median 14892000 13670000 1222400 14892000 13670000 1222400 0 0 0 10332 676;217 10604 37066;37067 55705;55706;55707 55707 3 RSLPHFR LPLDSIYKKTLPDWKRSLPHFRNGKLYFKP KKTLPDWKRSLPHFRNGKLYFKPIGDPVFA K R S F R N 0 2 0 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 0 0 0 0 7 1 911.50897 A6NHR9;J3KTL8 A6NHR9 1789 1795 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3 0.0099501 73.616 3 0.936 1.2493 NaN 1 Median 0.936 1.2493 NaN 1 0 Median NaN NaN NaN 0 0 Median 6511800 5601500 910290 6511800 5601500 910290 0 0 0 10333 568 10605 37068;37069;37070 55708;55709;55710 55710 3 RSLRPDPNFDALISK GNKECPTCRKKLVSKRSLRPDPNFDALISK RSLRPDPNFDALISKIYPSREEYEAHQDRV K R S S K I 1 2 1 2 0 0 0 0 0 1 2 1 0 1 2 2 0 0 0 0 0 0 15 2 1727.9319 X6RFN3;Q99496;Q06587;B4DVB5;A0A024RCR9;B4DW57 Q06587 95 109 RNF2;RING1 E3 ubiquitin-protein ligase RING2;E3 ubiquitin-protein ligase RING1 no no 3 0.00016322 54.598 1 0.8063 0.99244 NaN 1 Median 0.8063 0.99244 NaN 1 0 Median NaN NaN NaN 0 0 Median 16902000 8753100 8149000 16902000 8753100 8149000 0 0 0 10334 1446;1703 10606 37071 55711 55711 1 RSQGPVHITAGSEPVPIGEDEDDDLDQETFSICK EKPKSGDAKSSSKSKRSQGPVHITAGSEPV DEDDDLDQETFSICKERMRPVKKALKQLDK K R S C K E 1 1 0 5 1 2 4 3 1 3 1 1 0 1 3 3 2 0 0 2 0 0 34 1 3740.7112 A0A024RC75;O14647 A0A024RC75 1440 1473 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 4 0.018223 13.742 1 0.6279 0.79524 NaN 1 Median 0.6279 0.79524 NaN 1 0 Median NaN NaN NaN 0 0 Median 5356500 3295700 2060800 5356500 3295700 2060800 0 0 0 10335 289 10607 37072 55712 55712 1 RSSPAAFINPPIGTVTPALK KPRQVADAREKISLKRSSPAAFINPPIGTV AFINPPIGTVTPALKLTKTIQVPQQKAMAP K R S L K L 3 1 1 0 0 0 0 1 0 2 1 1 0 1 4 2 2 0 0 1 0 0 20 1 2036.1419 Q96DI9;F6VRR5;B4E0L0;Q9BY77;F8WCX5;Q659C6;B4DSH9;Q6R954 Q96DI9 121 140 POLDIP3;DKFZp434G0310;PDIP46 Polymerase delta-interacting protein 3 no no 3 0.0010479 66.045 4 1 0.79128 1.0462 3.0365 4 Median 0.79128 1.0462 3.0365 4 0 Median NaN NaN NaN 0 0 Median 33638000 19211000 14428000 30484000 16056000 14428000 3154700 3154700 0 10336 885 10608 37073;37074;37075;37076;37077 55713;55714;55715;55716;55717;55718 55715 6 RSTAPSAAASASASAAASSPAGGGAEALELLEHCGVCR SGSPGPGEGSAGGEKRSTAPSAAASASASA GAEALELLEHCGVCRERLRPEREPRLLPCL K R S C R E 12 2 0 0 2 0 3 4 1 0 3 0 0 0 2 7 1 0 0 1 0 0 38 1 3597.69 B2R8R5;Q13263 B2R8R5 32 69 TRIM28 Transcription intermediary factor 1-beta yes no 4 1.0126E-09 50.627 2 0.39639 0.5298 NaN 1 Median 0.39639 0.5298 NaN 1 0 Median NaN NaN NaN 0 0 Median 16979000 12254000 4724200 16979000 12254000 4724200 0 0 0 10337 716 10609 37078;37079 55719;55720;55721 55720 3 RSTITSREIQTAVR ERIAGEASRLAHYNKRSTITSREIQTAVRL KRSTITSREIQTAVRLLLPGELAKHAVSEG K R S V R L 1 3 0 0 0 1 1 0 0 2 0 0 0 0 0 2 3 0 0 1 0 0 14 2 1616.8958 B2R4S9;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;B4DR52;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;O60814;Q0D2M2;P57053;A0A024RCJ2;Q16778;P33778;P23527;P06899 B2R4S9 87 100 HIST1H2BI;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;H2BFS;HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J no no 3 0.011349 72.815 1 1 0.69434 0.79815 2.9817 2 Median 0.70328 0.81516 NaN 1 0 Median 0.68552 0.7815 NaN 1 0 Median 27195000 15306000 11889000 12089000 6186900 5902300 15106000 9119000 5986900 10338 25;295 10610 37080;37081 55722;55723 55723 2 RSVENQESVEIINDLK VKVSSVTKRTPRRIKRSVENQESVEIINDL SVENQESVEIINDLKVSTVTSPSRMIRKLR K R S L K V 0 1 2 1 0 1 3 0 0 2 1 1 0 0 0 2 0 0 0 2 0 0 16 1 1871.9589 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1877 1892 AHCTF1 Protein ELYS yes no 2;3 3.4832E-19 162.59 6 3 0.71577 0.99852 12.161 9 Median 0.74957 0.98573 14.83 6 0 Median 0.62713 0.99852 6.1652 3 0 Median 174570000 101830000 72745000 98341000 54644000 43696000 76234000 47185000 29049000 10339 1670 10611 37082;37083;37084;37085;37086;37087;37088;37089;37090 55724;55725;55726;55727;55728;55729;55730;55731;55732;55733;55734;55735;55736;55737;55738 55725 15 RSVFVGNLPYK RIRVDLASETSSRDKRSVFVGNLPYKVEES SRDKRSVFVGNLPYKVEESAIEKHFLDCGS K R S Y K V 0 1 1 0 0 0 0 1 0 0 1 1 0 1 1 1 0 0 1 2 0 0 11 1 1278.7085 P42696;A2A2V2 P42696 287 297 RBM34 RNA-binding protein 34 yes no 2 0.0075683 77.288 4 1.0189 1.3531 5.3374 4 Median 1.0189 1.3531 5.3374 4 0 Median NaN NaN NaN 0 0 Median 48778000 22718000 26060000 48778000 22718000 26060000 0 0 0 10340 1339 10612 37091;37092;37093;37094 55739;55740;55741;55742;55743 55743 5 RSVYIESR LNGGLQEEELSTSLKRSVYIESRIGTSTSF ELSTSLKRSVYIESRIGTSTSFDSGIAGLS K R S S R I 0 2 0 0 0 0 1 0 0 1 0 0 0 0 0 2 0 0 1 1 0 0 8 1 1008.5352 O95235 O95235 243 250 KIF20A Kinesin-like protein KIF20A yes yes 2 0.017073 71.451 1 0.58885 0.87384 NaN 1 Median NaN NaN NaN 0 0 Median 0.58885 0.87384 NaN 1 0 Median 22510000 14121000 8389200 0 0 0 22510000 14121000 8389200 10341 1215 10613 37095 55744;55745 55744 2 RTAAENDFVTLK LVEDYKKKYEDEINKRTAAENDFVTLKKDV INKRTAAENDFVTLKKDVDNAYMIKVELQS K R T L K K 2 1 1 1 0 0 1 0 0 0 1 1 0 1 0 0 2 0 0 1 0 0 12 1 1363.7096 CON__P35908;P35908 CON__P35908 281 292 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2 0.017319 85.958 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5956200 5956200 0 5956200 5956200 0 0 0 0 + 10342 964 10614 37096;37097 55746;55747 55747 2 RTADSSSSEDEEEYVVEK ______________________________ DSSSSEDEEEYVVEKVLDRRVVKGQVEYLL K R T E K V 1 1 0 2 0 0 5 0 0 0 0 1 0 0 0 4 1 0 1 2 0 0 18 1 2058.8866 V9HWG0;P45973;Q6I9T7;F8VNY3 V9HWG0 7 24 HEL25;CBX5 Chromobox protein homolog 5 yes no 2;3 1.7412E-46 190.8 6 0.24703 0.3237 3.2965 2 Median 0.24703 0.3237 3.2965 2 0 Median NaN NaN NaN 0 0 Median 36294000 30763000 5531100 36294000 30763000 5531100 0 0 0 10343 1341 10615 37098;37099;37100;37101;37102;37103 55748;55749;55750;55751;55752;55753;55754 55748 7 RTAEHEAAQQDLQSK EAERRWEEVQSYIRKRTAEHEAAQQDLQSK RTAEHEAAQQDLQSKFVAKENEVQSLHSKL K R T S K F 3 1 0 1 0 3 2 0 1 0 1 1 0 0 0 1 1 0 0 0 0 0 15 1 1710.8285 A0A024R663;Q86UP2 A0A024R663 507 521 KTN1 Kinectin yes no 3 0.036383 16.579 1 0.37602 0.50731 NaN 1 Median NaN NaN NaN 0 0 Median 0.37602 0.50731 NaN 1 0 Median 776720 514820 261900 0 0 0 776720 514820 261900 10344 155 10616 37104 55755 55755 1 RTAITTPNFK KSLYTDESSKPGKNKRTAITTPNFKKLHEA PGKNKRTAITTPNFKKLHEAHFKEMESIDQ K R T F K K 1 1 1 0 0 0 0 0 0 1 0 1 0 1 1 0 3 0 0 0 0 0 10 1 1147.635 Q9BXS6;A8K4B4;H0YMD2 Q9BXS6 177 186 NUSAP1 Nucleolar and spindle-associated protein 1 yes no 2 0.035074 41.876 1 0.42222 0.65781 NaN 1 Median NaN NaN NaN 0 0 Median 0.42222 0.65781 NaN 1 0 Median 11436000 8201900 3233700 0 0 0 11436000 8201900 3233700 10345 1723 10617 37105 55756 55756 1 RTAQEVETYR VKKKNFYQEHPDLARRTAQEVETYRRSKEI PDLARRTAQEVETYRRSKEITVRGHNCPKP R R T Y R R 1 2 0 0 0 1 2 0 0 0 0 0 0 0 0 0 2 0 1 1 0 0 10 1 1251.6208 B4DN41;J3KTA4;B5BUE6;P17844;Q7Z2V5;Q59E92;J3QRQ7;J3QR02;J3KRX8;C1IK54 B4DN41 57 66 DDX5;DKFZp686J01190;DDX5-ETV4 fusion Probable ATP-dependent RNA helicase DDX5 yes no 2 0.020485 47.894 1 1.5275 2.022 NaN 1 Median NaN NaN NaN 0 0 Median 1.5275 2.022 NaN 1 0 Median 2962000 1024800 1937300 0 0 0 2962000 1024800 1937300 10346 833 10618 37106 55757 55757 1 RTAQEVETYRR VKKKNFYQEHPDLARRTAQEVETYRRSKEI DLARRTAQEVETYRRSKEITVRGHNCPKPV R R T R R S 1 3 0 0 0 1 2 0 0 0 0 0 0 0 0 0 2 0 1 1 0 0 11 2 1407.7219 B4DN41;J3KTA4;B5BUE6;P17844;Q7Z2V5;Q59E92;J3QRQ7;J3QR02;J3KRX8;C1IK54 B4DN41 57 67 DDX5;DKFZp686J01190;DDX5-ETV4 fusion Probable ATP-dependent RNA helicase DDX5 yes no 3 0.0044782 96.334 2 0.34165 0.42967 10.323 2 Median 0.34165 0.42967 10.323 2 0 Median NaN NaN NaN 0 0 Median 24510000 17337000 7173100 24510000 17337000 7173100 0 0 0 10347 833 10619 37107;37108 55758;55759 55759 2 RTASALFAGFR ______________________________ ASERRTASALFAGFRALGLFSNDIPHVVRF R R T F R A 3 2 0 0 0 0 0 1 0 0 1 0 0 2 0 1 1 0 0 0 0 0 11 1 1195.6462 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 8 18 WDR36 WD repeat-containing protein 36 yes no 3 0.016548 29.341 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10348 404 10620 37109 55760 55760 1 RTEEGPTLSYGR TPENLPQILLQLKRRRTEEGPTLSYGRDGR KRRRTEEGPTLSYGRDGRSATREPPYRVPR R R T G R D 0 2 0 0 0 0 2 2 0 0 1 0 0 0 1 1 2 0 1 0 0 0 12 1 1364.6684 A0A0R4J2E8;A8MXP9;P43243;D6REM6;Q68D11;D6R991 A0A0R4J2E8 149 160 MATR3;DKFZp686K23100 Matrin-3 yes no 3 0.045062 18.413 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10349 445 10621 37110 55761 55761 1 RTELFIAAEGIHTGQFVYCGK PLAKVVFRDPYRFKKRTELFIAAEGIHTGQ AAEGIHTGQFVYCGKKAQLNIGNVLPVGTM K R T G K K 2 1 0 0 1 1 2 3 1 2 1 1 0 2 0 0 2 0 1 1 0 0 21 1 2396.1947 P62917;B4DVG7;E9PKZ0;E9PKU4;G3V1A1 P62917 72 92 RPL8 60S ribosomal protein L8 yes no 3;4 1.6753E-09 111.63 5 1 0.74864 1.2922 31.145 5 Linear 0.75111 1.0323 4.7993 4 0 Linear 0.29941 0.49448 NaN 1 0 Median 360400000 185120000 175270000 342790000 171170000 171620000 17612000 13958000 3653400 10350 1417 10622 37111;37112;37113;37114;37115;37116 55762;55763;55764;55765;55766;55767;55768;55769;55770;55771;55772 55764 11 RTEMENEFVLIK LVEDFKNKYEDEINKRTEMENEFVLIKKDV INKRTEMENEFVLIKKDVDEAYMNKVELES K R T I K K 0 1 1 0 0 0 3 0 0 1 1 1 1 1 0 0 1 0 0 1 0 0 12 1 1507.7705 CON__P05787;P05787;Q969I0;F8VUG2;F8VP67;CON__H-INV:HIT000016045;F8W1U3 CON__P05787 186 197 KRT8 Keratin, type II cytoskeletal 8 no no 2;3 0.00031486 62.162 4 2.0057 3.1995 10.165 4 Median NaN NaN NaN 0 0 Median 2.0057 3.1995 10.165 4 0 Median 129120000 43731000 85393000 0 0 0 129120000 43731000 85393000 + 10351 955;1068 10623 37117;37118;37119;37120 55773;55774;55775;55776;55777 55775 329 5 RTEQEEDEELLTESSK DEKQNLLSVGDYRHRRTEQEEDEELLTESS TEQEEDEELLTESSKATNVCTRFEDSPSYV R R T S K A 0 1 0 1 0 1 6 0 0 0 2 1 0 0 0 2 2 0 0 0 0 0 16 1 1921.8753 O60264;B7ZAX9;B4DZC0;Q4W5G3 O60264 145 160 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2;3 1.1755E-30 171.76 4 2 2.1789 3.6301 16.68 3 Median 2.1687 2.8284 NaN 1 0 Median 2.1841 3.7537 4.7323 2 0 Median 136340000 43128000 93210000 53289000 16068000 37222000 83049000 27060000 55989000 10352 1189 10624 37121;37122;37123;37124;37125;37126 55778;55779;55780;55781;55782;55783;55784;55785;55786 55781 9 RTFDETVSTYVPLAQQVEDFHK GCTIVKPFNLSQGKKRTFDETVSTYVPLAQ STYVPLAQQVEDFHKRTPNRYHLRSKKDDI K R T H K R 1 1 0 2 0 2 2 0 1 0 1 1 0 2 1 1 3 0 1 3 0 0 22 1 2609.2762 Q643R0;Q9ULW0;B3KM90 Q643R0 315 336 HCTP4;TPX2 Targeting protein for Xklp2 yes no 4 0.035191 11.804 2 0.7441 1.1695 3.9658 2 Median NaN NaN NaN 0 0 Median 0.7441 1.1695 3.9658 2 0 Median 24537000 12009000 12527000 0 0 0 24537000 12009000 12527000 10353 1581 10625 37127;37128 55787;55788 55788 2 RTGAIVDVPVGEELLGR VFGNDKLIKEGDIVKRTGAIVDVPVGEELL GAIVDVPVGEELLGRVVDALGNAIDGKGPI K R T G R V 1 2 0 1 0 0 2 3 0 1 2 0 0 0 1 0 1 0 0 3 0 0 17 1 1779.9843 K7ERX7;V9HW26;P25705;B4DGW3;K7EK77;K7EJP1;K7EQH4 K7ERX7 133 149 ATP5A1;HEL-S-123m ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 3 0.024236 26.593 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7228100 0 7228100 0 0 0 7228100 0 7228100 10354 1154 10626 37129 55789 55789 1 RTHLASDDLYK IELEEMGPSLDLVLRRTHLASDDLYKLSMK LVLRRTHLASDDLYKLSMKMPKALKPKKKK R R T Y K L 1 1 0 2 0 0 0 0 1 0 2 1 0 0 0 1 1 0 1 0 0 0 11 1 1317.6677 A8K800;Q9H7B2;Q5VXN0;B4DWS5 A8K800 227 237 RPF2 Ribosome production factor 2 homolog yes no 2;3 0.0014613 86.288 4 0.74367 0.98435 20.945 4 Median 0.74367 0.98435 20.945 4 0 Median NaN NaN NaN 0 0 Median 66352000 36772000 29580000 66352000 36772000 29580000 0 0 0 10355 637 10627 37130;37131;37132;37133 55790;55791;55792;55793;55794;55795;55796 55790 7 RTIAQDYGVLK GGLGPMNIPLVSDPKRTIAQDYGVLKADEG SDPKRTIAQDYGVLKADEGISFRGLFIIDD K R T L K A 1 1 0 1 0 1 0 1 0 1 1 1 0 0 0 0 1 0 1 1 0 0 11 1 1262.6983 A0A0A0MSI0;Q06830;B2R4P2 A0A0A0MSI0 110 120 PRDX1 Peroxiredoxin-1 yes no 2 6.4715E-07 125.23 4 2 0.58628 0.7713 108.06 5 Median 0.58628 0.7713 9.1022 3 0 Plateau 2.9798 5.0986 1.483 2 0 Median 186190000 100780000 85415000 123620000 84144000 39475000 62571000 16632000 45939000 10356 397 10628 37134;37135;37136;37137;37138;37139 55797;55798;55799;55800;55801;55802;55803 55797 6 RTIVEELLADSEFR PADFYHSRIPKKQRKRTIVEELLADSEFRR KRTIVEELLADSEFRRYNRRKYSEIMAEKA K R T F R R 1 2 0 1 0 0 3 0 0 1 2 0 0 1 0 1 1 0 0 1 0 0 14 1 1676.8733 Q5QJE6 Q5QJE6 712 725 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 3 0.00044099 60.918 3 2 0.88847 1.2462 11.038 4 Median 0.9507 1.3064 13.178 3 0 Median 0.80445 1.1888 NaN 1 0 Median 36154000 18528000 17627000 15966000 8142200 7823400 20189000 10386000 9803300 10357 1561 10629 37140;37141;37142;37143;37144 55804;55805;55806;55807;55808;55809;55810;55811;55812;55813;55814 55811 11 RTIVEELLADSEFRR PADFYHSRIPKKQRKRTIVEELLADSEFRR RTIVEELLADSEFRRYNRRKYSEIMAEKAA K R T R R Y 1 3 0 1 0 0 3 0 0 1 2 0 0 1 0 1 1 0 0 1 0 0 15 2 1832.9745 Q5QJE6 Q5QJE6 712 726 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 3 0.00054599 66.784 2 2 0.70597 0.81582 19.012 4 Median 0.61378 0.78915 31.691 2 0 Median 0.70597 0.81582 8.3037 2 0 Median 239300000 132860000 106450000 53317000 28176000 25140000 185980000 104680000 81305000 10358 1561 10630 37145;37146;37147;37148 55815;55816;55817;55818 55817 4 RTLAEPPAK LEGTGKEGKKASSRKRTLAEPPAKGLLQPV KASSRKRTLAEPPAKGLLQPVKLSRAELYK K R T A K G 2 1 0 0 0 0 1 0 0 0 1 1 0 0 2 0 1 0 0 0 0 0 9 1 981.56073 Q9H6R4;A0A0A0MRW6;B4DF80 Q9H6R4 39 47 NOL6 Nucleolar protein 6 yes no 2 1.902E-05 126.55 3 2 0.92785 1.2609 19.397 5 Median 0.9054 1.1815 5.7166 3 0 Median 0.97908 1.6603 9.7259 2 0 Median 141250000 71809000 69444000 63620000 32928000 30692000 77634000 38881000 38753000 10359 1738 10631 37149;37150;37151;37152;37153 55819;55820;55821;55822;55823;55824;55825;55826 55821 8 RTLEGELHDLR LNSKEAALSTALSEKRTLEGELHDLRGQVA LSEKRTLEGELHDLRGQVAKLEAALGEAKK K R T L R G 0 2 0 1 0 0 2 1 1 0 3 0 0 0 0 0 1 0 0 0 0 0 11 1 1337.7052 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;Q5TCI8;H0YAB0 P02545 156 166 LMNA Prelamin-A/C;Lamin-A/C yes no 3 4.7261E-05 142.76 4 2 0.68338 0.93753 49.564 6 Median 0.67907 0.92276 1.6384 4 0 Median 1.601 2.4118 10.033 2 0 Median 326690000 180560000 146130000 287140000 164540000 122600000 39552000 16023000 23529000 10360 1229 10632 37154;37155;37156;37157;37158;37159 55827;55828;55829;55830;55831;55832;55833;55834;55835;55836;55837;55838 55834 12 RTLFVLNVPPYCTEESLSR AHGVRQGTKSTWPQKRTLFVLNVPPYCTEE VLNVPPYCTEESLSRLLSTCGLVQSVELQE K R T S R L 0 2 1 0 1 0 2 0 0 0 3 0 0 1 2 2 2 0 1 2 0 0 19 1 2280.1573 Q9Y3A4 Q9Y3A4 59 77 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 3 0.029862 37.112 1 0.85477 1.1794 NaN 1 Median 0.85477 1.1794 NaN 1 0 Median NaN NaN NaN 0 0 Median 9379100 5658400 3720700 9379100 5658400 3720700 0 0 0 10361 1815 10633 37160 55839;55840 55840 2 RTLLIDELNK EEAEAERLLLIATGKRTLLIDELNKLKNEG IATGKRTLLIDELNKLKNEGPQRKNKASPQ K R T N K L 0 1 1 1 0 0 1 0 0 1 3 1 0 0 0 0 1 0 0 0 0 0 10 1 1213.703 B4DSL6;A8K5D9;A0A024RA49;Q9NQW6;H7C1K5 B4DSL6 647 656 ANLN Actin-binding protein anillin yes no 2 0.01665 81.525 2 0.86939 1.1434 15.595 2 Median 0.86939 1.1434 15.595 2 0 Median NaN NaN NaN 0 0 Median 12016000 6923400 5092400 12016000 6923400 5092400 0 0 0 10362 235 10634 37161;37162 55841;55842 55841 2 RTLTQIK GLYINFNADKLQSNKRTLTQIKEKKKNELL ADKLQSNKRTLTQIKEKKKNELLQKAVITP K R T I K E 0 1 0 0 0 1 0 0 0 1 1 1 0 0 0 0 2 0 0 0 0 0 7 1 858.5287 Q5QJE6 Q5QJE6 590 596 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 2 0.02837 71.296 2 1 0.86179 1.1191 20.64 3 Median 0.83258 1.0805 4.9522 2 0 Median 0.92594 1.5369 NaN 1 0 Median 71860000 37360000 34500000 50544000 26620000 23925000 21316000 10741000 10575000 10363 1561 10635 37163;37164;37165 55843;55844;55845 55843 3 RTNAENEFVTIK MVEDYRNKYEDEINKRTNAENEFVTIKKDV INKRTNAENEFVTIKKDVDGAYMTKVDLQA K R T I K K 1 1 2 0 0 0 2 0 0 1 0 1 0 1 0 0 2 0 0 1 0 0 12 1 1420.731 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 277 288 KRT1 Keratin, type II cytoskeletal 1 no no 2;3 3.7196E-06 140.63 4 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 264590000 264590000 0 108950000 108950000 0 155640000 155640000 0 + 10364 1113;1114 10636 37166;37167;37168;37169;37170;37171;37172;37173 55846;55847;55848;55849;55850;55851;55852;55853 55846 8 RTNAENEFVTIKK MVEDYRNKYEDEINKRTNAENEFVTIKKDV NKRTNAENEFVTIKKDVDGAYMTKVDLQAK K R T K K D 1 1 2 0 0 0 2 0 0 1 0 2 0 1 0 0 2 0 0 1 0 0 13 2 1548.826 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 277 289 KRT1 Keratin, type II cytoskeletal 1 no no 2 0.044403 89.9 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2873800 2873800 0 2873800 2873800 0 0 0 0 + 10365 1113;1114 10637 37174 55854 55854 1 RTNIIPVLEDAR FSHRAGRDLVNVAKKRTNIIPVLEDARHPL AKKRTNIIPVLEDARHPLKYRMLIGMVDVI K R T A R H 1 2 1 1 0 0 1 0 0 2 1 0 0 0 1 0 1 0 0 1 0 0 12 1 1395.7834 A6NHQ2 A6NHQ2 219 230 FBLL1 rRNA/tRNA 2-O-methyltransferase fibrillarin-like protein 1 yes yes 2;3 0.00050447 83.081 4 0.61603 0.83243 18.926 2 Median 0.61603 0.83243 18.926 2 0 Median NaN NaN NaN 0 0 Median 61909000 46924000 14984000 61909000 46924000 14984000 0 0 0 10366 566 10638 37175;37176;37177;37178 55855;55856;55857;55858;55859 55858 5 RTNSTFNQVVLK ______________________________ LARRTNSTFNQVVLKRLFMSRTNRPPLSLS R R T L K R 0 1 2 0 0 1 0 0 0 0 1 1 0 1 0 1 2 0 0 2 0 0 12 1 1405.7678 Q0QEW2;G3V203;H0YHA7;A0A024QZD1;J3QQ67;Q07020;F8VYV2;B4DDY5;A0A075B7A0 Q0QEW2 15 26 RPL18 60S ribosomal protein L18 yes no 2 0.0092382 97.163 2 0.97163 1.2528 NaN 1 Median 0.97163 1.2528 NaN 1 0 Median NaN NaN NaN 0 0 Median 9978000 5786900 4191100 9978000 5786900 4191100 0 0 0 10367 9 10639 37179;37180 55860;55861;55862 55862 3 RTPAPPEPGSPAPGEGPSGR AENEPPEKETLSPPRRTPAPPEPGSPAPGE PEPGSPAPGEGPSGRKRRRVPRDGRRAGNA R R T G R K 2 2 0 0 0 0 2 4 0 0 0 0 0 0 7 2 1 0 0 0 0 0 20 1 1912.9391 A0A024R4Q5;P0C1Z6 A0A024R4Q5 171 190 TFPT TCF3 fusion partner yes no 3 0.0081446 24.095 1 0.72456 0.95244 NaN 1 Median 0.72456 0.95244 NaN 1 0 Median NaN NaN NaN 0 0 Median 3717900 1978300 1739500 3717900 1978300 1739500 0 0 0 10368 125 10640 37181 55863 55863 1 RTPITHILVCRPK HRQPGFAFSRNGPVKRTPITHILVCRPKRT VKRTPITHILVCRPKRTKASMSEFLESEDG K R T P K R 0 2 0 0 1 0 0 0 1 2 1 1 0 0 2 0 2 0 0 1 0 0 13 2 1589.9188 J3QQW9;Q15022;A8K1U9 J3QQW9 499 511 SUZ12 Polycomb protein SUZ12 yes no 4 0.0010429 45.28 2 0.74391 0.89063 7.7727 2 Median 0.74391 0.89063 7.7727 2 0 Median NaN NaN NaN 0 0 Median 15850000 9289700 6560300 15850000 9289700 6560300 0 0 0 10369 1143 10641 37182;37183 55864;55865;55866;55867 55867 4 RTPNNVVSTPAPSPDASQLASSLSSQK MDDAWKYNGDVEDIKRTPNNVVSTPAPSPD SPDASQLASSLSSQKEVAATEEDVTRLPSP K R T Q K E 3 1 2 1 0 2 0 0 0 0 2 1 0 0 4 7 2 0 0 2 0 0 27 1 2738.3835 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424 A0A1P7ZIM8 562 588 LMO7 LIM domain only protein 7 yes no 3 7.1084E-24 130.69 4 0.80011 1.0297 43.025 4 Median 0.80011 1.0297 43.025 4 0 Median NaN NaN NaN 0 0 Median 28254000 17390000 10864000 28254000 17390000 10864000 0 0 0 10370 525 10642 37184;37185;37186;37187 55868;55869;55870;55871;55872 55868 5 RTPSATFQQATK ELPKGNKEDSLKKIKRTPSATFQQATKIKK KIKRTPSATFQQATKIKKLRAGKLSPLKSK K R T T K I 2 1 0 0 0 2 0 0 0 0 0 1 0 1 1 1 3 0 0 0 0 0 12 1 1334.6943 Q03164;E9PR05;Q9UPD0;Q9Y6P1 Q03164 258 269 KMT2A;MLL Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 1.6257E-09 139.76 4 2 0.98845 1.3185 16.794 6 Median 0.92346 1.2123 8.0965 4 0 Median 1.0344 1.675 5.0188 2 0 Median 86947000 43298000 43649000 54587000 27151000 27435000 32360000 16147000 16213000 10371 1438 10643 37188;37189;37190;37191;37192;37193 55873;55874;55875;55876;55877;55878;55879;55880;55881;55882;55883 55881 11 RTQIVTEIISEIR FLVERLLHIIIDDNKRTQIVTEIISEIRAP NKRTQIVTEIISEIRAPIVTVGVNNDPADV K R T I R A 0 2 0 0 0 1 2 0 0 4 0 0 0 0 0 1 2 0 0 1 0 0 13 1 1556.8886 H0Y9Z8;Q9BPX3;Q6NUR1 Q9BPX3 458 470 NCAPG Condensin complex subunit 3 no no 3 5.0129E-07 105.14 4 3 0.67491 0.90575 30.039 5 Median 0.679 0.91943 6.6239 4 0 Median 0.32652 0.46707 NaN 1 0 Median 48457000 23436000 25021000 28984000 16829000 12155000 19473000 6606700 12866000 10372 1706;1096 10644 37194;37195;37196;37197;37198;37199;37200 55884;55885;55886;55887;55888;55889;55890;55891;55892;55893 55889 9 RTQSSLTVSEVLTR RVGPSSGDAPEPSSRRTQSSLTVSEVLTRR RRTQSSLTVSEVLTRRNRVGDTITVAAWNH R R T T R R 0 2 0 0 0 1 1 0 0 0 2 0 0 0 0 3 3 0 0 2 0 0 14 1 1575.858 A0A024RAC0;Q86V48 A0A024RAC0 992 1005 LUZP1 Leucine zipper protein 1 yes no 3 0.034787 19.669 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10373 238 10645 37201 55894 55894 1 RTSSAQVEGGVHSLHSYEK QVRAMMYSGELKFEKRTSSAQVEGGVHSLH AQVEGGVHSLHSYEKRLF____________ K R T E K R 1 1 0 0 0 1 2 2 2 0 1 1 0 0 0 4 1 0 1 2 0 0 19 1 2071.0083 P12268;H0Y4R1 P12268 493 511 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 3;4 1.0677E-06 98.882 5 0.35917 0.47411 13.142 4 Median 0.35917 0.47411 13.142 4 0 Median NaN NaN NaN 0 0 Median 51189000 36974000 14215000 51189000 36974000 14215000 0 0 0 10374 1261 10646 37202;37203;37204;37205;37206 55895;55896;55897;55898;55899;55900 55899 5 RTTINTEDVK ENFAKDLEMFARHAKRTTINTEDVKLLARR ARHAKRTTINTEDVKLLARRSNSLLKYITD K R T V K L 0 1 1 1 0 0 1 0 0 1 0 1 0 0 0 0 3 0 0 1 0 0 10 1 1175.6146 Q8N2Z9;A0A087WT10 Q8N2Z9 74 83 APITD1;APITD1-CORT Centromere protein S yes no 2 0.038323 70.908 1 1 0.66902 0.93262 12.523 2 Median 0.75078 1.019 NaN 1 0 Median 0.59616 0.85359 NaN 1 0 Median 6367600 3494200 2873400 3228500 1618100 1610400 3139100 1876100 1263000 10375 1635 10647 37207;37208 55901;55902 55901 2 RTTTFFQFCNADSGTLLCTDVAAR DLPVLAIHGKQKQNKRTTTFFQFCNADSGT NADSGTLLCTDVAARGLDIPEVDWIVQYDP K R T A R G 3 2 1 2 2 1 0 1 0 0 2 0 0 3 0 1 5 0 0 1 0 0 24 1 2751.2745 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254;Q59FR7;H7C452 Q4ZG72 340 363 DDX18 ATP-dependent RNA helicase DDX18 yes no 3 3.1941E-37 147.78 4 1.0534 1.4384 10.079 4 Median 1.0534 1.4384 10.079 4 0 Median NaN NaN NaN 0 0 Median 133080000 64707000 68369000 133080000 64707000 68369000 0 0 0 10376 242 10648 37209;37210;37211;37212 55903;55904;55905;55906;55907;55908;55909;55910;55911 55909 9 RVALGHGLK VDNIQAGELTEGIWRRVALGHGLKLLTKNG TEGIWRRVALGHGLKLLTKNGHVYKYDGFR R R V L K L 1 1 0 0 0 0 0 2 1 0 2 1 0 0 0 0 0 0 0 1 0 0 9 1 949.58213 A0A024R4Z6;Q08945;Q59GH7 A0A024R4Z6 55 63 SSRP1 FACT complex subunit SSRP1 yes no 3 0.00010234 120.87 4 0.77316 1.0171 1.2076 4 Median 0.77316 1.0171 1.2076 4 0 Median NaN NaN NaN 0 0 Median 153870000 89849000 64017000 153870000 89849000 64017000 0 0 0 10377 132 10649 37213;37214;37215;37216 55912;55913;55914;55915;55916;55917;55918 55912 7 RVATWFNQPAR NGMVLKPHFHKDWQRRVATWFNQPARKIRR DWQRRVATWFNQPARKIRRRKARQAKARRI R R V A R K 2 2 1 0 0 1 0 0 0 0 0 0 0 1 1 0 1 1 0 1 0 0 11 1 1344.7051 Q6NZ55;A8K4C8;P26373;J3QSB4;H3BTH3;B4DGL7 Q6NZ55 21 31 RPL13 60S ribosomal protein L13 yes no 3 0.00067221 49.934 2 0.53569 0.77335 3.1844 2 Median NaN NaN NaN 0 0 Median 0.53569 0.77335 3.1844 2 0 Median 20679000 12855000 7823800 0 0 0 20679000 12855000 7823800 10378 604 10650 37217;37218 55919;55920 55920 2 RVCEEIAIIPSK EKYYTRLGNDFHTNKRVCEEIAIIPSKKLR TNKRVCEEIAIIPSKKLRNKIAGYVTHLMK K R V S K K 1 1 0 0 1 0 2 0 0 3 0 1 0 0 1 1 0 0 0 1 0 0 12 1 1413.765 H0YN88;A0A075B716;P08708;H0YN73 H0YN88 33 44 RPS17 40S ribosomal protein S17 yes no 2 7.0942E-05 89.9 4 0.59737 0.78776 2.2004 3 Median 0.59737 0.78776 2.2004 3 0 Median NaN NaN NaN 0 0 Median 141310000 91000000 50315000 141310000 91000000 50315000 0 0 0 10379 327 10651 37219;37220;37221;37222 55921;55922;55923;55924;55925;55926 55925 6 RVCEEIAIIPSKK EKYYTRLGNDFHTNKRVCEEIAIIPSKKLR NKRVCEEIAIIPSKKLRNKIAGYVTHLMKR K R V K K L 1 1 0 0 1 0 2 0 0 3 0 2 0 0 1 1 0 0 0 1 0 0 13 2 1541.8599 H0YN88;A0A075B716;P08708;H0YN73 H0YN88 33 45 RPS17 40S ribosomal protein S17 yes no 3 0.0027361 45.992 1 0.95696 1.1412 NaN 1 Median 0.95696 1.1412 NaN 1 0 Median NaN NaN NaN 0 0 Median 12155000 4241500 7913600 12155000 4241500 7913600 0 0 0 10380 327 10652 37223 55927 55927 1 RVDALNDEIR LGTDLLSQLSLEDQKRVDALNDEIRQLQQE LEDQKRVDALNDEIRQLQQENRQLLNERIK K R V I R Q 1 2 1 2 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 10 1 1199.6258 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 796 805 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.023988 49.06 2 0.79891 1.1871 8.1875 2 Median NaN NaN NaN 0 0 Median 0.79891 1.1871 8.1875 2 0 Median 29000000 16205000 12795000 0 0 0 29000000 16205000 12795000 10381 663 10653 37224;37225 55928;55929;55930 55930 3 RVDGLAFVNEDIVASK EVEFVFSEGSEASGRRVDGLAFVNEDIVAS VDGLAFVNEDIVASKGSGLGTICLWSWRQT R R V S K G 2 1 1 2 0 0 1 1 0 1 1 1 0 1 0 1 0 0 0 3 0 0 16 1 1731.9155 A0A140VJD0;Q9UFC0;H7C5N7 A0A140VJD0 499 514 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes no 3 0.051428 35.304 1 0.39996 0.54951 NaN 1 Median 0.39996 0.54951 NaN 1 0 Median NaN NaN NaN 0 0 Median 1882800 1239900 642890 1882800 1239900 642890 0 0 0 10382 493 10654 37226 55931 55931 1 RVEILNEHR IGCGRLNEPIKVLCRRVEILNEHRGEKLNR IKVLCRRVEILNEHRGEKLNRVKMVEKEKD R R V H R G 0 2 1 0 0 0 2 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 9 1 1164.6364 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83 Q9NTJ3 273 281 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 0.00051016 108.31 4 1 0.6094 0.83464 4.3601 4 Median 0.63139 0.85512 3.1908 3 0 Median 0.58195 0.78765 NaN 1 0 Median 187450000 104160000 83292000 181070000 100190000 80882000 6379300 3969200 2410100 10383 1760 10655 37227;37228;37229;37230;37231 55932;55933;55934;55935;55936;55937;55938 55933 7 RVEILNEHRGEK IGCGRLNEPIKVLCRRVEILNEHRGEKLNR LCRRVEILNEHRGEKLNRVKMVEKEKDALE R R V E K L 0 2 1 0 0 0 3 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 12 2 1478.7954 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83 Q9NTJ3 273 284 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3;4 1.5711E-10 119.88 6 0.62171 0.75871 12.52 6 Median 0.62171 0.75871 12.52 6 0 Median NaN NaN NaN 0 0 Median 243880000 143890000 99997000 243880000 143890000 99997000 0 0 0 10384 1760 10656 37232;37233;37234;37235;37236;37237 55939;55940;55941;55942;55943;55944;55945;55946 55943 8 RVEILSEGNEVQFIQLAK TMMLNVRNLFEQLVRRVEILSEGNEVQFIQ ILSEGNEVQFIQLAKDFEDFRKKWQRTDHE R R V A K D 1 1 1 0 0 2 3 1 0 2 2 1 0 1 0 1 0 0 0 2 0 0 18 1 2072.1266 B2RE34;A0A024R136;Q9H0H5;F8VRD2;F8VWY4;F8VVE5;F8VWX0;F8W0L1;F8VZ66;F8VV47;F8VUW9;F8VV39;F8VS54 B2RE34 18 35 RACGAP1 Rac GTPase-activating protein 1 yes no 3 2.544E-40 180.78 4 1 0.93252 1.2416 13.239 5 Median 0.92233 1.2376 4.799 4 0 Median 1.0134 1.6203 NaN 1 0 Median 78023000 40306000 37717000 64205000 33703000 30501000 13818000 6602400 7216100 10385 49 10657 37238;37239;37240;37241;37242 55947;55948;55949;55950;55951;55952;55953;55954;55955;55956 55947 10 RVENSIPAAGETQNVEVAAGPAGK KEWGDDEEEQPSKRRRVENSIPAAGETQNV GETQNVEVAAGPAGKCAAVDVEPPSKQKEK R R V G K C 5 1 2 0 0 1 3 3 0 1 0 1 0 0 2 1 1 0 0 3 0 0 24 1 2364.2034 Q15020;B4DYA2;B4DRG9;F8VV04 Q15020 646 669 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 3 0.017219 31.384 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10386 1501 10658 37243 55957 55957 1 RVETSEHFR LTRESTRGSRRTPRKRVETSEHFRIDGPVI RRTPRKRVETSEHFRIDGPVISESTPIAET K R V F R I 0 2 0 0 0 0 2 0 1 0 0 0 0 1 0 1 1 0 0 1 0 0 9 1 1159.5734 A0A024RBE7;P42167 A0A024RBE7 261 269 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 3 0.00016946 104.82 3 0.47565 0.65142 7.217 3 Median 0.47565 0.65142 7.217 3 0 Median NaN NaN NaN 0 0 Median 53574000 35500000 18073000 53574000 35500000 18073000 0 0 0 10387 270 10659 37244;37245;37246 55958;55959;55960;55961 55959 3 RVFLSTE DVEWRWHPYTNTARKRVFLSTE________ PYTNTARKRVFLSTE_______________ K R V T E - 0 1 0 0 0 0 1 0 0 0 1 0 0 1 0 1 1 0 0 1 0 0 7 1 850.45487 H0Y714;Q96G21;E7ENR5 H0Y714 274 280 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 2 0.018313 89.673 1 1.0222 1.3855 NaN 1 Median 1.0222 1.3855 NaN 1 0 Median NaN NaN NaN 0 0 Median 33734000 17167000 16567000 33734000 17167000 16567000 0 0 0 10388 1094 10660 37247 55962;55963 55962 2 RVGLPPGK EVQGPPAKKAAVPAKRVGLPPGKAAAKASE KAAVPAKRVGLPPGKAAAKASESSSSEESS K R V G K A 0 1 0 0 0 0 0 2 0 0 1 1 0 0 2 0 0 0 0 1 0 0 8 1 822.50757 B2RAU8;A0A0A0MRM9;Q14978;S4R3C2 B2RAU8 111 118 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 2 0.044454 47.849 1 0.58022 0.87071 NaN 1 Median NaN NaN NaN 0 0 Median 0.58022 0.87071 NaN 1 0 Median 4350100 2529600 1820500 0 0 0 4350100 2529600 1820500 10389 388 10661 37248 55964 55964 1 RVGLSGAPADACSTAQK VAYLGNEVSDEECLKRVGLSGAPADACSTA GLSGAPADACSTAQKAVGYICKCNGGRGAI K R V Q K A 4 1 0 1 1 1 0 2 0 0 1 1 0 0 1 2 1 0 0 1 0 0 17 1 1687.8312 Q53GF0;Q8NFW8 Q53GF0 383 399 CMAS N-acylneuraminate cytidylyltransferase yes no 3 0.051877 52.365 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10390 1542 10662 37249 55965 55965 1 RVHMYDTVSQIK NHVKSCFQNMEICKRRVHMYDTVSQIKSPF CKRRVHMYDTVSQIKSPFTTHVAPNTSTNL R R V I K S 0 1 0 1 0 1 0 0 1 1 0 1 1 0 0 1 1 0 1 2 0 0 12 1 1475.7555 A0A024R0H9;B3KV38;Q5SQL3;B4DZ33;Q86Z02 A0A024R0H9 171 182 HIPK1 Homeodomain-interacting protein kinase 1 yes no 2 0.0068179 56.783 1 0.60216 0.78177 NaN 1 Median 0.60216 0.78177 NaN 1 0 Median NaN NaN NaN 0 0 Median 16309000 9416300 6892300 16309000 9416300 6892300 0 0 0 10391 37 10663 37250 55966 55966 6 1 RVIERPPLTQQQAAQK DESSTGSLAMSTRPRRVIERPPLTQQQAAQ VIERPPLTQQQAAQKRTCDSITPSKSSPVP R R V Q K R 2 2 0 0 0 4 1 0 0 1 1 1 0 0 2 0 1 0 0 1 0 0 16 2 1862.0486 F5H101;A0A024R250;Q76FK4;F8WE42;B4DM91;Q6AI50;A6H8Z4;F5GWN9;A0A0A0MSJ1 F5H101 241 256 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 3 0.0014913 53.377 2 2 0.56784 0.78747 11.805 4 Median 0.66177 0.80321 14.393 2 0 Median 0.48979 0.77395 14.041 2 0 Median 30703000 19607000 11097000 17911000 11284000 6627200 12792000 8323100 4469400 10392 80 10664 37251;37252;37253;37254 55967;55968;55969;55970;55971 55968 5 RVLALSVETDYTFPLAEK PTVASVPHSIINGYKRVLALSVETDYTFPL ALSVETDYTFPLAEKVKAFLADPSAFVAAA K R V E K V 2 1 0 1 0 0 2 0 0 0 3 1 0 1 1 1 2 0 1 2 0 0 18 1 2051.0939 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VWS0;Q53HK9;F8VW21;F8VZS0;Q6NSF2;B4E3D5;Q3MHV2;F8W1K8 Q53HW2 247 264 RPLP0 60S acidic ribosomal protein P0 yes no 3 1.8162E-06 100.45 3 1 0.83763 1.1414 20.096 3 Median 0.76777 1.006 17.85 2 0 Median 0.83763 1.319 NaN 1 0 Median 55664000 30542000 25122000 43632000 24215000 19417000 12032000 6326700 5705500 10393 281 10665 37255;37256;37257;37258 55972;55973;55974;55975 55974 4 RVLDELTLTK VALRQSVEADINGLRRVLDELTLTKADLEM INGLRRVLDELTLTKADLEMQIESLTEELA R R V T K A 0 1 0 1 0 0 1 0 0 0 3 1 0 0 0 0 2 0 0 1 0 0 10 1 1186.6921 CON__P13645;P13645 CON__P13645 257 266 KRT10 Keratin, type I cytoskeletal 10 yes no 2 0.0096207 84.817 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13657000 13657000 0 13657000 13657000 0 0 0 0 + 10394 960 10666 37259;37260 55976;55977 55977 2 RVLGLVLLR KIKPKNAKQPEREEKRVLGLVLLRGENLVS PEREEKRVLGLVLLRGENLVSMTVEGPPPK K R V L R G 0 2 0 0 0 0 0 1 0 0 4 0 0 0 0 0 0 0 0 2 0 0 9 1 1037.7073 J3QLE5;Q6LBS1;Q66K91;Q5XPV6;B4DVS0;X5DP00;Q53HE7;Q9UIS4;Q15182;P63162;P14678 J3QLE5 65 73 SNRPN;SNRPB Small nuclear ribonucleoprotein-associated protein;Small nuclear ribonucleoprotein-associated protein N;Small nuclear ribonucleoprotein-associated proteins B and B yes no 2 0.034108 46.426 1 0.67471 0.89873 NaN 1 Median 0.67471 0.89873 NaN 1 0 Median NaN NaN NaN 0 0 Median 11789000 7066400 4722200 11789000 7066400 4722200 0 0 0 10395 863 10667 37261 55978 55978 1 RVLGQLHGGPSSCSATGTNR TEPGSSGSPIYSPEKRVLGQLHGGPSSCSA LHGGPSSCSATGTNRSDQYGRVFTSWTGGG K R V N R S 1 2 1 0 1 1 0 4 1 0 2 0 0 0 1 3 2 0 0 1 0 0 20 1 2054.0076 CON__P15636 CON__P15636 409 428 yes yes 3;4 1.606E-16 91.622 4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 899890000 899890000 0 874160000 874160000 0 25736000 25736000 0 + 10396 962 10668 37262;37263;37264;37265;37266;37267 55979;55980;55981;55982;55983;55984 55982 6 RVLLGETGK ERAYQKQPTIFQNKKRVLLGETGKEKLPRY IFQNKKRVLLGETGKEKLPRYYKNIGLGFK K R V G K E 0 1 0 0 0 0 1 2 0 0 2 1 0 0 0 0 1 0 0 1 0 0 9 1 971.57638 P62280;M0QZC5;M0R1H6 P62280 22 30 RPS11 40S ribosomal protein S11 yes no 2 1.2776E-38 205.91 4 2 0.80416 1.0596 27.984 6 Median 0.83321 1.1027 4.7798 4 0 Median 0.36704 0.63908 4.2521 2 0 Median 1040100000 605780000 434280000 827190000 452380000 374810000 212870000 153400000 59465000 10397 1404 10669 37268;37269;37270;37271;37272;37273 55985;55986;55987;55988;55989;55990;55991;55992;55993;55994;55995;55996 55990 12 RVLLLAGR KYLKALDTRMAAESRRVLLLAGRLAAQSLD RMAAESRRVLLLAGRLAAQSLDTSGLRHVQ R R V G R L 1 2 0 0 0 0 0 1 0 0 3 0 0 0 0 0 0 0 0 1 0 0 8 1 896.59197 P07199 P07199 291 298 CENPB Major centromere autoantigen B yes yes 2 0.044332 73.975 1 0.83785 1.1582 NaN 1 Median 0.83785 1.1582 NaN 1 0 Median NaN NaN NaN 0 0 Median 5731300 2716500 3014800 5731300 2716500 3014800 0 0 0 10398 1239 10670 37274 55997 55997 1 RVLLQASQDENFGNTTPR EAEVTRTARKQSAQKRVLLQASQDENFGNT LQASQDENFGNTTPRNQVIPRTPSSFRQPF K R V P R N 1 2 2 1 0 2 1 1 0 0 2 0 0 1 1 1 2 0 0 1 0 0 18 1 2045.029 P57740;G3V1T4 P57740 31 48 NUP107 Nuclear pore complex protein Nup107 yes no 3 1.0876E-07 110.44 2 0.40138 0.5391 22.123 2 Median 0.40138 0.5391 22.123 2 0 Median NaN NaN NaN 0 0 Median 10553000 7267600 3285800 10553000 7267600 3285800 0 0 0 10399 1384 10671 37275;37276 55998;55999;56000 55998 3 RVLNVTNLEFSDTR KLKEFVDYYYSTNRKRVLNVTNLEFSDTRM KRVLNVTNLEFSDTRMSSFVEPPDIVKKLS K R V T R M 0 2 2 1 0 0 1 0 0 0 2 0 0 1 0 1 2 0 0 2 0 0 14 1 1662.8689 O75151 O75151 188 201 PHF2 Lysine-specific demethylase PHF2 yes yes 3 0.018125 27.263 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3454600 3454600 0 3454600 3454600 0 0 0 0 10400 1196 10672 37277 56001 56001 1 RVLPPSALQSVA LAQVSAHPWVRANSRRVLPPSALQSVA___ NSRRVLPPSALQSVA_______________ R R V V A - 2 1 0 0 0 1 0 0 0 0 2 0 0 0 2 2 0 0 0 2 0 0 12 1 1236.719 B2RC06;J3KT86;Q96GD4 B2RC06 333 344 AURKB Aurora kinase B no no 2 0.0058879 51.445 2 0.70819 1.0513 7.0775 2 Median NaN NaN NaN 0 0 Median 0.70819 1.0513 7.0775 2 0 Median 32962000 19398000 13564000 0 0 0 32962000 19398000 13564000 10401 731;1686 10673 37278;37279 56002;56003 56002 2 RVLQALEGLK VMPSHFSRGSKSVARRVLQALEGLKMVEKD KSVARRVLQALEGLKMVEKDQDGGRKLTPQ R R V L K M 1 1 0 0 0 1 1 1 0 0 3 1 0 0 0 0 0 0 0 1 0 0 10 1 1125.687 B0ZBD0;Q8WVX7;P39019;A0A075B6E2 B0ZBD0 102 111 RPS19 40S ribosomal protein S19 yes no 2;3 7.8276E-08 129.28 4 1 0.80468 1.1741 18.273 4 Median 0.87323 1.1409 17.852 3 0 Median 0.74151 1.3221 NaN 1 0 Median 224660000 132690000 91969000 162440000 94295000 68149000 62214000 38394000 23820000 10402 669 10674 37280;37281;37282;37283;37284 56004;56005;56006;56007;56008;56009 56007 6 RVLTLR NDFVMLKGCVVGTKKRVLTLRKSLLVQTKR KGCVVGTKKRVLTLRKSLLVQTKRRALEKI K R V L R K 0 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 6 1 756.49701 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;B3KS36;Q49AJ9;Q9BT63 P39023 343 348 RPL3;rpl3 60S ribosomal protein L3 yes no 2 0.0014938 154.35 2 1 0.68696 0.9956 3.9927 3 Median 0.70329 0.96376 4.5966 2 0 Median 0.66672 1.0033 NaN 1 0 Median 492700000 290810000 201890000 460410000 271540000 188870000 32289000 19276000 13014000 10403 1330 10675 37285;37286;37287 56010;56011;56012;56013 56011 4 RVLTLRK NDFVMLKGCVVGTKKRVLTLRKSLLVQTKR GCVVGTKKRVLTLRKSLLVQTKRRALEKID K R V R K S 0 2 0 0 0 0 0 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 7 2 884.59197 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;B3KS36;Q49AJ9;Q9BT63 P39023 343 349 RPL3;rpl3 60S ribosomal protein L3 yes no 3 0.012202 84.498 2 0.71988 0.88185 3.1068 2 Median 0.71988 0.88185 3.1068 2 0 Median NaN NaN NaN 0 0 Median 63749000 35982000 27767000 63749000 35982000 27767000 0 0 0 10404 1330 10676 37288;37289 56014;56015 56015 2 RVLVTQQFPCQNPLPVNSGQAQR ISGPVKATAPVGGPKRVLVTQQFPCQNPLP PCQNPLPVNSGQAQRVLCPSNSSQRVPLQA K R V Q R V 1 2 2 0 1 5 0 1 0 0 2 0 0 1 3 1 1 0 0 3 0 0 23 1 2636.3605 O14965;Q5QPD4;A3KFJ0;A3KFJ1;A3KFJ2;Q5QPD1;Q5QPD2 O14965 24 46 AURKA Aurora kinase A yes no 3 8.3276E-05 64.68 1 0.76019 1.0508 NaN 1 Median 0.76019 1.0508 NaN 1 0 Median NaN NaN NaN 0 0 Median 5849100 3095400 2753600 5849100 3095400 2753600 0 0 0 10405 1172 10677 37290 56016 56016 1 RVNSASSSNPPAEVDPDTILK LSDSPSMKKESELPRRVNSASSSNPPAEVD SSNPPAEVDPDTILKALFKSSGASVTTQPT R R V L K A 2 1 2 2 0 0 1 0 0 1 1 1 0 0 3 4 1 0 0 2 0 0 21 1 2196.1022 Q96DI9;F6VRR5;B4E0L0;Q9BY77 Q96DI9 376 396 POLDIP3 Polymerase delta-interacting protein 3 yes no 3 7.4336E-17 64.422 4 2 0.76528 0.99564 19.362 5 Median 0.90063 1.2112 13.288 3 0 Median 0.55344 0.84914 0.88677 2 0 Median 44488000 25149000 19338000 30512000 16765000 13747000 13976000 8384100 5591600 10406 885 10678 37291;37292;37293;37294;37295;37296 56017;56018;56019;56020;56021;56022;56023;56024;56025 56021 9 RVPAHGHPVIER NYCSNISFYLILKARRVPAHGHPVIERLVT KARRVPAHGHPVIERLVTYRNLINKLSVVD R R V E R L 1 2 0 0 0 0 1 1 2 1 0 0 0 0 2 0 0 0 0 2 0 0 12 1 1366.7582 Q9NQZ2 Q9NQZ2 289 300 UTP3 Something about silencing protein 10 yes yes 2;3;4 0.00016391 68.847 5 0.9498 1.318 16.244 5 Median 0.9498 1.318 16.244 5 0 Median NaN NaN NaN 0 0 Median 78289000 40124000 38165000 78289000 40124000 38165000 0 0 0 10407 1755 10679 37297;37298;37299;37300;37301 56026;56027;56028;56029;56030;56031;56032 56030 4 RVPFSLLR ______________________________ ______________________________ R R V L R G 0 2 0 0 0 0 0 0 0 0 2 0 0 1 1 1 0 0 0 1 0 0 8 1 986.60253 V9HW43;P04792;B4DL87;F8WE04 V9HW43 5 12 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 2 0.00010379 127.46 4 1 0.32712 0.44309 129.1 3 Median 0.32352 0.44233 0.24515 2 0 Median 2.5627 4.1388 NaN 1 0 Median 289030000 198190000 90839000 237130000 183960000 53169000 51894000 14224000 37671000 10408 1232 10680 37302;37303;37304;37305;37306 56033;56034;56035;56036;56037 56033 5 RVPSPVLIK ESLAAVAYLLNLVLKRVPSPVLIKKFSDAS LNLVLKRVPSPVLIKKFSDASKAFMDIMSA K R V I K K 0 1 0 0 0 0 0 0 0 1 1 1 0 0 2 1 0 0 0 2 0 0 9 1 1007.6492 B3KMR5;Q5JTH9 B3KMR5 177 185 RRP12 RRP12-like protein yes no 2 0.026808 50.805 1 1 0.9231 1.3338 5.0317 2 Median 0.97814 1.2872 NaN 1 0 Median 0.87116 1.3822 NaN 1 0 Median 62091000 31929000 30162000 49110000 24691000 24419000 12981000 7237600 5743500 10409 756 10681 37307;37308 56038;56039 56038 2 RVPTAPAATSK INAENKAKINMAGAKRVPTAPAATSKPGLR AGAKRVPTAPAATSKPGLRPRTALGDIGNK K R V S K P 3 1 0 0 0 0 0 0 0 0 0 1 0 0 2 1 2 0 0 1 0 0 11 1 1097.6193 P14635;E9PC90;H1UBN2;D6RHI0 P14635 26 36 CCNB1;CCNB1V G2/mitotic-specific cyclin-B1 yes no 2 1.4617E-11 136.5 4 2 0.84015 1.2597 14.366 6 Median 0.83606 1.1028 13.742 4 0 Median 0.84015 1.3594 3.4321 2 0 Median 138970000 76377000 62594000 102110000 56210000 45897000 36865000 20167000 16697000 10410 1268 10682 37309;37310;37311;37312;37313;37314 56040;56041;56042;56043;56044;56045;56046;56047;56048;56049;56050 56044 11 RVPVPPAAGS RIKEARNSVCIIPLRRVPVPPAAGS_____ IIPLRRVPVPPAAGS_______________ R R V G S - 2 1 0 0 0 0 0 1 0 0 0 0 0 0 3 1 0 0 0 2 0 0 10 1 949.53451 O43818 O43818 466 475 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 0.0069527 60.59 2 0.61563 0.8331 1.0849 2 Median NaN NaN NaN 0 0 Median 0.61563 0.8331 1.0849 2 0 Median 11283000 6821700 4461000 0 0 0 11283000 6821700 4461000 10411 1188 10683 37315;37316 56051;56052 56052 2 RVQELQQGAFGR LQRGGLKQLSARNRRRVQELQQGAFGRGAR NRRRVQELQQGAFGRGARSKKGKMRKRM__ R R V G R G 1 2 0 0 0 3 1 2 0 0 1 0 0 1 0 0 0 0 0 1 0 0 12 1 1387.732 Q8TDD1 Q8TDD1 857 868 DDX54 ATP-dependent RNA helicase DDX54 yes yes 3 0.0044885 39.878 1 0.80316 1.0449 NaN 1 Median 0.80316 1.0449 NaN 1 0 Median NaN NaN NaN 0 0 Median 8409500 4877800 3531700 8409500 4877800 3531700 0 0 0 10412 1658 10684 37317 56053 56053 1 RVSDILR KPHLITHGFSSRLGKRVSDILRYLFPVPKD GFSSRLGKRVSDILRYLFPVPKDDSHRVIT K R V L R Y 0 2 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 7 1 857.5083 H0Y714;Q96G21;E7ENR5;B8ZZ47;B9A008 H0Y714 187 193 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 2 0.019872 82.305 1 0.69468 1.0633 NaN 1 Median NaN NaN NaN 0 0 Median 0.69468 1.0633 NaN 1 0 Median 18158000 10942000 7215400 0 0 0 18158000 10942000 7215400 10413 1094 10685 37318 56054;56055 56055 2 RVSISEGDDKIEYR VTKNLVPGESVYGEKRVSISEGDDKIEYRA KRVSISEGDDKIEYRAWNPFRSKLAAAILG K R V Y R A 0 2 0 2 0 0 2 1 0 2 0 1 0 0 0 2 0 0 1 1 0 0 14 2 1665.8322 Q96BS4;P22087;M0R299;M0QXL5;M0R2Q4;B4DLD4;M0R0P1;M0R2U2;M0R1H0;M0R2B0 Q96BS4 61 74 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2;3 3.0593E-78 224.34 6 0.66541 0.82659 12.563 4 Median 0.66541 0.82659 12.563 4 0 Median NaN NaN NaN 0 0 Median 735160000 440250000 294910000 735160000 440250000 294910000 0 0 0 10414 1288 10686 37319;37320;37321;37322;37323;37324 56056;56057;56058;56059;56060;56061;56062;56063;56064;56065 56065 10 RVSLEPHQGPGTPESK QIAEGTGITTRQQRKRVSLEPHQGPGTPES VSLEPHQGPGTPESKKATSCFPRPMTPRDR K R V S K K 0 1 0 0 0 1 2 2 1 0 1 1 0 0 3 2 1 0 0 1 0 0 16 1 1717.8747 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q9UNL7;Q4LE64;Q14980 Q4LE64 1975 1990 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2;3 2.7815E-14 107.98 3 2 0.55222 0.72737 21.287 5 Median 0.58006 0.76772 4.3053 3 0 Median 0.32203 0.51881 1.9008 2 0 Median 79573000 53812000 25761000 48418000 30321000 18097000 31156000 23491000 7664400 10415 148;1499 10687 37325;37326;37327;37328;37329 56066;56067;56068;56069;56070;56071 56070 6 RVTFALPDDAETEDTGVLNVK LQENEDNKQHKESLKRVTFALPDDAETEDT PDDAETEDTGVLNVKKNSDEVKSSFEKRQE K R V V K K 2 1 1 3 0 0 2 1 0 0 2 1 0 1 1 0 3 0 0 3 0 0 21 1 2289.1489 B3KPV5;O00566;U3KQ48 B3KPV5 330 350 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 3 1.9889E-59 196.76 4 2 0.95138 1.3174 15.581 6 Median 0.95138 1.2451 8.1366 4 0 Median 0.94429 1.627 7.0981 2 0 Median 278960000 150560000 128400000 177400000 93912000 83488000 101560000 56653000 44908000 10416 767 10688 37330;37331;37332;37333;37334;37335 56072;56073;56074;56075;56076;56077;56078;56079;56080;56081;56082;56083 56075 12 RVTFALPDDAETEDTGVLNVKK LQENEDNKQHKESLKRVTFALPDDAETEDT DDAETEDTGVLNVKKNSDEVKSSFEKRQEK K R V K K N 2 1 1 3 0 0 2 1 0 0 2 2 0 1 1 0 3 0 0 3 0 0 22 2 2417.2438 B3KPV5;O00566;U3KQ48 B3KPV5 330 351 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 3 6.0794E-05 72.058 2 0.78213 0.93933 56.682 2 Median 0.78213 0.93933 56.682 2 0 Median NaN NaN NaN 0 0 Median 12351000 6349100 6002300 12351000 6349100 6002300 0 0 0 10417 767 10689 37336;37337 56084;56085;56086;56087 56087 4 RVTFEADENENITVVK ______________________________ VTFEADENENITVVKGIRLSENVIDRMKES R R V V K G 1 1 2 1 0 0 3 0 0 1 0 1 0 1 0 0 2 0 0 3 0 0 16 1 1862.9374 A4D1N4;C9JRZ6;Q9NX63;B7Z1X9;F8WAR4;F8WD73 A4D1N4 9 24 CHCHD3 MICOS complex subunit MIC19 yes no 2;3 6.5342E-09 96.371 7 1 0.45666 0.60402 79.605 5 Median 0.48373 0.60012 13.79 4 0 Linear 2.0991 3.2699 NaN 1 0 Median 64430000 42414000 22015000 58508000 39984000 18524000 5921800 2430800 3491000 10418 549 10690 37338;37339;37340;37341;37342;37343;37344;37345 56088;56089;56090;56091;56092;56093;56094;56095 56093 8 RVTIMPK VGLFEDTNLCAIHAKRVTIMPKDIQLARRI NLCAIHAKRVTIMPKDIQLARRIRGERA__ K R V P K D 0 1 0 0 0 0 0 0 0 1 0 1 1 0 1 0 1 0 0 1 0 0 7 1 843.50004 B2R4P9;P84243;B4E380;K7EK07;Q16695;Q6NXT2;A8K4Y7;P68431;Q5TEC6;Q71DI3 B2R4P9 117 123 H3F3A;H3F3B;HIST3H3;H3F3C;HIST1H3A;HIST2H3PS2;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.3C;Histone H3.1;Histone H3.2 no no 2 8.0468E-08 124.12 4 0.66267 0.87395 14.765 2 Median 0.66267 0.87395 14.765 2 0 Median NaN NaN NaN 0 0 Median 3549500000 2006000000 1543600000 3549500000 2006000000 1543600000 0 0 0 10419 685;1424;1605;1577 10691;10692 37346;37347;37348;37349 56096;56097;56098;56099 56096 236 3 RVVLSGHPFK TGHLMSVDPDRMVIKRVVLSGHPFKIFTKM RMVIKRVVLSGHPFKIFTKMAVVRYMFFNR K R V F K I 0 1 0 0 0 0 0 1 1 0 1 1 0 1 1 1 0 0 0 2 0 0 10 1 1138.6611 Q2NL82 Q2NL82 696 705 TSR1 Pre-rRNA-processing protein TSR1 homolog yes yes 3 0.0010587 50.791 2 0.75118 0.96319 20.985 2 Median 0.75118 0.96319 20.985 2 0 Median NaN NaN NaN 0 0 Median 24615000 13561000 11054000 24615000 13561000 11054000 0 0 0 10420 1529 10693 37350;37351 56100;56101 56101 2 RVVPSDLYPLVLGFLR ______________________________ VVPSDLYPLVLGFLRDNQLSEVANKFAKAT R R V L R D 0 2 0 1 0 0 0 1 0 0 4 0 0 1 2 1 0 0 1 3 0 0 16 1 1843.072 B2RAU8;A0A0A0MRM9;Q14978;S4R349;S4R402;S4R341 B2RAU8 8 23 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 3 0.0018289 72.315 3 0.76562 1.0037 10.338 3 Median 0.76562 1.0037 10.338 3 0 Median NaN NaN NaN 0 0 Median 13693000 7819900 5873400 13693000 7819900 5873400 0 0 0 10421 388 10694 37352;37353;37354 56102;56103;56104;56105;56106;56107 56106 5 RVVVPELSAGVASR RSEIATERDLVAWSRRVVVPELSAGVASRQ RRVVVPELSAGVASRQEEWRTAKGEEEIKT R R V S R Q 2 2 0 0 0 0 1 1 0 0 1 0 0 0 1 2 0 0 0 4 0 0 14 1 1438.8256 Q8WWQ0 Q8WWQ0 722 735 PHIP PH-interacting protein yes yes 3 1.5198E-05 95.067 4 2 0.83519 1.1749 8.9557 6 Median 0.84652 1.1597 9.9447 4 0 Median 0.8118 1.2429 7.9754 2 0 Median 207260000 108800000 98466000 149250000 78209000 71036000 58020000 30590000 27430000 10422 1668 10695 37355;37356;37357;37358;37359;37360 56108;56109;56110;56111;56112;56113;56114;56115 56111 8 RVVYPLEK AQWLYDNHKDESYLRRVVYPLEKLLTSHKR KDESYLRRVVYPLEKLLTSHKRLVMKDSAV R R V E K L 0 1 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 1 2 0 0 8 1 1002.5862 O60832;C9IYT0;H7C2Q2 O60832 284 291 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 0.0073296 85.676 3 1 0.66802 0.92875 5.7632 4 Median 0.68726 0.8994 5.5146 3 0 Median 0.58578 0.97254 NaN 1 0 Median 234060000 139990000 94075000 211130000 126310000 84813000 22936000 13675000 9261300 10423 1193 10696 37361;37362;37363;37364 56116;56117;56118;56119 56118 4 RVYATILNAGTNTDGFK EGVVAVLLTKKSLARRVYATILNAGTNTDG YATILNAGTNTDGFKEQGVTFPSGDIQEQL R R V F K E 2 1 2 1 0 0 0 2 0 1 1 1 0 1 0 0 3 0 1 1 0 0 17 1 1839.9479 A0A0U1RQF0;P49327 A0A0U1RQF0 241 257 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 0.0046534 33.872 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5377000 5377000 0 5377000 5377000 0 0 0 0 10424 486 10697 37365 56120 56120 1 RVYLTTQLK SGVSKKVEPSDPVARRVYLTTQLKQKKSTL SDPVARRVYLTTQLKQKKSTLASVNIQALP R R V L K Q 0 1 0 0 0 1 0 0 0 0 2 1 0 0 0 0 2 0 1 1 0 0 9 1 1120.6604 A0A024R0F1;Q9UNY4 A0A024R0F1 414 422 TTF2 Transcription termination factor 2 yes no 2 0.0011312 107.57 2 1 0.81952 1.1156 8.5419 3 Median 0.82315 1.0882 3.5253 2 0 Median 0.80484 1.2536 NaN 1 0 Median 24900000 14384000 10517000 17589000 10265000 7323700 7311300 4118500 3192800 10425 33 10698 37366;37367;37368 56121;56122;56123;56124;56125 56124 4 RVYSLFLDESR CRKRKGTEVQVDDIKRVYSLFLDESRSTQY DDIKRVYSLFLDESRSTQYMKEYQDAFLFN K R V S R S 0 2 0 1 0 0 1 0 0 0 2 0 0 1 0 2 0 0 1 1 0 0 11 1 1383.7147 Q9Y230;B3KNL2 Q9Y230 428 438 RUVBL2 RuvB-like 2 yes no 3 0.0030203 38.021 1 1 0.76801 1.018 49.499 2 Median 0.53973 0.71733 NaN 1 0 Median 1.0928 1.4446 NaN 1 0 Median 11938000 7842200 4095700 9134200 6181500 2952800 2803600 1660700 1142900 10426 1801 10699 37369;37370 56126;56127 56126 2 RWPQTPK PVQKLDLPGNLPGSKRWPQTPKEKAQALED PGNLPGSKRWPQTPKEKAQALEDLAGFKEL K R W P K E 0 1 0 0 0 1 0 0 0 0 0 1 0 0 2 0 1 1 0 0 0 0 7 1 911.49774 P46013 P46013 2301 2307 MKI67 Antigen KI-67 yes yes 2 0.045924 55.676 1 0.91022 1.4884 NaN 1 Median NaN NaN NaN 0 0 Median 0.91022 1.4884 NaN 1 0 Median 18821000 9558500 9262900 0 0 0 18821000 9558500 9262900 10427 1342 10700 37371 56128 56128 1 RYAHVVLR RKIAFAITAIKGVGRRYAHVVLRKADIDLT AIKGVGRRYAHVVLRKADIDLTKRAGELTE R R Y L R K 1 2 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 2 0 0 8 1 1012.593 P62269 P62269 39 46 RPS18 40S ribosomal protein S18 yes yes 3 0.0017113 68.787 3 0.8329 1.1272 0.8416 2 Median 0.8329 1.1272 0.8416 2 0 Median NaN NaN NaN 0 0 Median 23448000 14003000 9445200 23448000 14003000 9445200 0 0 0 10428 1402 10701 37372;37373;37374 56129;56130;56131;56132;56133 56132 5 RYAICSALAASALPALVMSK KTWRRWHRRVNTTQKRYAICSALAASALPA SALAASALPALVMSKGHRIEEVPELPLVVE K R Y S K G 6 1 0 0 1 0 0 0 0 1 3 1 1 0 1 3 0 0 1 1 0 0 20 1 2092.1173 P36578;Q59GY2;B4DFI6;H3BM89;B4DMJ6;B4DMJ2;H3BTP7 P36578 121 140 RPL4 60S ribosomal protein L4 yes no 3 4.7881E-07 109.83 7 0.6432 0.85103 25.588 5 Median 0.6432 0.85103 25.588 5 0 Median NaN NaN NaN 0 0 Median 83909000 47305000 36604000 83909000 47305000 36604000 0 0 0 10429 1325 10702;10703 37375;37376;37377;37378;37379;37380;37381 56134;56135;56136;56137;56138;56139;56140;56141;56142;56143 56134 552 9 RYAVPSAGLR FNFVLKAIRPQIDLKRYAVPSAGLRLFALH QIDLKRYAVPSAGLRLFALHASQFSTCLLD K R Y L R L 2 2 0 0 0 0 0 1 0 0 1 0 0 0 1 1 0 0 1 1 0 0 10 1 1088.6091 P78527;B4DL41 P78527 264 273 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.0073549 59.645 1 0.4839 0.65353 NaN 1 Median 0.4839 0.65353 NaN 1 0 Median NaN NaN NaN 0 0 Median 24380000 16390000 7990600 24380000 16390000 7990600 0 0 0 10430 1427 10704 37382 56144 56144 1 RYDQDLCYTDILFTEQER FVDCLIEQTHPEIRKRYDQDLCYTDILFTE QDLCYTDILFTEQERGVGIKSTPVTVVLPD K R Y E R G 0 2 0 3 1 2 2 0 0 1 2 0 0 1 0 0 2 0 2 0 0 0 18 1 2364.0692 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3 B4DZB1 111 128 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 3 0.00016134 83.948 4 0.52502 0.70411 13.805 3 Median 0.52502 0.70411 13.805 3 0 Median NaN NaN NaN 0 0 Median 41360000 21737000 19624000 41360000 21737000 19624000 0 0 0 10431 654 10705 37383;37384;37385;37386 56145;56146;56147;56148 56145 4 RYDYCDIPECEDK NDENGPWCYTTDPDKRYDYCDIPECEDKCM DKRYDYCDIPECEDKCMHCSGENYEGKIAK K R Y D K C 0 1 0 3 2 0 2 0 0 1 0 1 0 0 1 0 0 0 2 0 0 0 13 1 1761.6974 CON__P06868 CON__P06868 179 191 yes yes 2 0.023622 106.79 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 10432 956 10706 37387 56149 56149 1 RYEDQELTGK ERREKEMLERLEKQKRYEDQELTGKNLPAF LEKQKRYEDQELTGKNLPAFRLVDTPEGLP K R Y G K N 0 1 0 1 0 1 2 1 0 0 1 1 0 0 0 0 1 0 1 0 0 0 10 1 1237.5939 Q9UIG0 Q9UIG0 579 588 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 3.675E-09 150.81 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27011000 0 27011000 7260600 0 7260600 19750000 0 19750000 10433 1786 10707 37388;37389 56150;56151 56150 2 RYEEELEINDFPQTAR QEEERQDGGQNESFKRYEEELEINDFPQTA YEEELEINDFPQTARWKVTPKEALQRISEY K R Y A R W 1 2 1 1 0 1 4 0 0 1 1 0 0 1 1 0 1 0 1 0 0 0 16 1 2008.949 A8K6X3;A0A0C4DG89;Q7L014 A8K6X3 932 947 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 3 0.0013305 71.685 3 0.53085 0.72462 18.159 3 Median 0.53085 0.72462 18.159 3 0 Median NaN NaN NaN 0 0 Median 14980000 8574900 6405200 14980000 8574900 6405200 0 0 0 10434 424 10708 37390;37391;37392 56152;56153;56154;56155 56154 4 RYEEIVK GVNKMDSTEPPYSQKRYEEIVKEVSTYIKK TEPPYSQKRYEEIVKEVSTYIKKIGYNPDT K R Y V K E 0 1 0 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 7 1 935.50763 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;P68104;A8K9C4;Q5VTE0;Q96RE1;A0A087WVQ9;Q53GE9;Q53GA1;B4DV42;Q8IUB0;Q504Z0;Q53HR1;Q9NZS6;A0A087WV01;Q9H2I7;Q53G89;B4E2C5;Q16577;A9X7H1 Q6IPT9 166 172 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1 Elongation factor 1-alpha;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 2 0.041161 58.981 1 0.64766 0.843 NaN 1 Median 0.64766 0.843 NaN 1 0 Median NaN NaN NaN 0 0 Median 43832000 27851000 15982000 43832000 27851000 15982000 0 0 0 10435 1421 10709 37393 56156 56156 1 RYELLEHK DRARLPEELRSLVQKRYELLEHKKRWASMS LRSLVQKRYELLEHKKRWASMSEEQRKEYL K R Y H K K 0 1 0 0 0 0 2 0 1 0 2 1 0 0 0 0 0 0 1 0 0 0 8 1 1086.5822 Q9UIG0 Q9UIG0 525 532 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 0.0027347 90.15 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52947000 0 52947000 52947000 0 52947000 0 0 0 10436 1786 10710 37394;37395 56157;56158 56158 2 RYEQEHAAIQDK SSGGQQPSGMKEGVKRYEQEHAAIQDKLFQ GVKRYEQEHAAIQDKLFQVAKREREAATKH K R Y D K L 2 1 0 1 0 2 2 0 1 1 0 1 0 0 0 0 0 0 1 0 0 0 12 1 1486.7165 J3QTB2;H0Y922;J3QTA6;Q9BRQ6 J3QTB2 89 100 CHCHD6 MICOS complex subunit MIC25 yes no 3 0.00083261 90.793 2 0.6333 0.80963 6.8475 2 Median 0.6333 0.80963 6.8475 2 0 Median NaN NaN NaN 0 0 Median 5015600 3120100 1895500 5015600 3120100 1895500 0 0 0 10437 1095 10711 37396;37397 56159;56160 56159 2 RYESHPVCADLQAK EQYQKAAEEVEAKFKRYESHPVCADLQAKI KRYESHPVCADLQAKILQCYRENTHQTLKC K R Y A K I 2 1 0 1 1 1 1 0 1 0 1 1 0 0 1 1 0 0 1 1 0 0 14 1 1672.7991 A4D1N4;C9JRZ6;Q9NX63 A4D1N4 176 189 CHCHD3 MICOS complex subunit MIC19 yes no 2;3 3.1493E-08 106.54 5 0.48117 0.63246 28.576 4 Linear 0.48117 0.63246 28.576 4 0 Linear NaN NaN NaN 0 0 Median 105680000 72475000 33208000 105680000 72475000 33208000 0 0 0 10438 549 10712 37398;37399;37400;37401;37402 56161;56162;56163;56164;56165;56166;56167 56163 7 RYLEGTSCIAGVLVPAK GRSTTQELMEDDRVKRYLEGTSCIAGVLVP LEGTSCIAGVLVPAKDQPGRQEKMSIYQAM K R Y A K D 2 1 0 0 1 0 1 2 0 1 2 1 0 0 1 1 1 0 1 2 0 0 17 1 1832.9819 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 2218 2234 EPPK1 Epiplakin no no 3 0.0063974 54.253 2 0.85004 1.1474 25.786 2 Median 0.85004 1.1474 25.786 2 0 Median NaN NaN NaN 0 0 Median 11304000 7738300 3565700 11304000 7738300 3565700 0 0 0 10439 373;1386 10713 37403;37404 56168;56169;56170 56169 3 RYLTSFPIDDR VPSFGEAMAYFAMVKRYLTSFPIDDRVQSH AMVKRYLTSFPIDDRVQSHILHLEHDLVHV K R Y D R V 0 2 0 2 0 0 0 0 0 1 1 0 0 1 1 1 1 0 1 0 0 0 11 1 1381.699 P07199;Q71VN3 P07199 556 566 CENPB Major centromere autoantigen B yes no 2;3 0.0093751 82.494 3 0.89431 1.158 18.314 3 Median 0.89431 1.158 18.314 3 0 Median NaN NaN NaN 0 0 Median 20239000 11213000 9026200 20239000 11213000 9026200 0 0 0 10440 1239 10714 37405;37406;37407 56171;56172;56173 56173 3 RYNIPHGPVVGSTR NYADLSDTELTTLLRRYNIPHGPVVGSTRR RRYNIPHGPVVGSTRRLYEKKIFEYETQRR R R Y T R R 0 2 1 0 0 0 0 2 1 1 0 0 0 0 2 1 1 0 1 2 0 0 14 1 1551.827 P50402 P50402 18 31 EMD Emerin yes yes 3 2.6401E-05 79.885 2 0.39171 0.54575 NaN 1 Median 0.39171 0.54575 NaN 1 0 Median NaN NaN NaN 0 0 Median 13359000 12448000 910760 13359000 12448000 910760 0 0 0 10441 1357 10715 37408;37409 56174;56175 56175 2 RYNVYGYTGQGVFSNVVR AEGYYRVNIGEVLDKRYNVYGYTGQGVFSN VYGYTGQGVFSNVVRARDNARANQEVAVKI K R Y V R A 0 2 2 0 0 1 0 3 0 0 0 0 0 1 0 1 1 0 3 4 0 0 18 1 2078.0334 B4DZQ5;A0A024QZY5;Q13523;H0YDJ3 B4DZQ5 672 689 PRPF4B Serine/threonine-protein kinase PRP4 homolog yes no 3 0.00010745 53.779 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2123700 2123700 0 2123700 2123700 0 0 0 0 10442 24 10716 37410 56176 56176 1 RYQDIIHSIHLAR PQGIRESQLKERLEKRYQDIIHSIHLARKP EKRYQDIIHSIHLARKPNLGLKSCDGNQEL K R Y A R K 1 2 0 1 0 1 0 0 2 3 1 0 0 0 0 1 0 0 1 0 0 0 13 1 1620.8849 Q9UIG0 Q9UIG0 1024 1036 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 4 0.00019137 64.224 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17290000 0 17290000 17290000 0 17290000 0 0 0 10443 1786 10717 37411;37412 56177;56178;56179 56177 3 RYQKSTELLIR PHRYRPGTVALREIRRYQKSTELLIRKLPF REIRRYQKSTELLIRKLPFQRLVREIAQDF R R Y I R K 0 2 0 0 0 1 1 0 0 1 2 1 0 0 0 1 1 0 1 0 0 0 11 2 1405.8041 B2R4P9;P84243;B4E380;K7EK07;Q16695;Q6NXT2;B2R6Y1;K7EMV3;B4DEB1;K7ES00;K7EP01;P68431;Q5TEC6;Q71DI3 B2R4P9 54 64 H3F3A;H3F3B;HIST3H3;H3F3C;HIST1H3A;HIST2H3PS2;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.3C;Histone H3.1;Histone H3.2 no no 3 0.043558 30.004 1 0.63013 0.94101 NaN 1 Median NaN NaN NaN 0 0 Median 0.63013 0.94101 NaN 1 0 Median 4860500 3152400 1708100 0 0 0 4860500 3152400 1708100 10444 685;1424;1605;1577 10718 37413 56180 56180 1 RYSSEVATESPLDFTK QGDSFLNEDLNQLIKRYSSEVATESPLDFT YSSEVATESPLDFTKYLKTSLH________ K R Y T K Y 1 1 0 1 0 0 2 0 0 0 1 1 0 1 1 3 2 0 1 1 0 0 16 1 1828.8843 A8K905;Q8WTT2 A8K905 778 793 NOC3L Nucleolar complex protein 3 homolog yes no 2;3 3.664E-06 106.19 4 0.89691 1.1832 9.8415 2 Median 0.89691 1.1832 9.8415 2 0 Median NaN NaN NaN 0 0 Median 28554000 16473000 12081000 28554000 16473000 12081000 0 0 0 10445 643 10719 37414;37415;37416;37417 56181;56182;56183;56184 56182 4 RYTCGEAPDYDR IRLLLEFTDTSYEEKRYTCGEAPDYDRSQW EEKRYTCGEAPDYDRSQWLDVKFKLDLDFP K R Y D R S 1 2 0 2 1 0 1 1 0 0 0 0 0 0 1 0 1 0 2 0 0 0 12 1 1501.6256 Q6FGJ9;Q59EJ5;P21266;A4UJ43;A0A0A0MTN3 Q6FGJ9 36 47 GSTM3 Glutathione S-transferase Mu 3 yes no 3 0.0032202 41.644 1 0.32488 0.4223 NaN 1 Median 0.32488 0.4223 NaN 1 0 Median NaN NaN NaN 0 0 Median 8226700 6540900 1685800 8226700 6540900 1685800 0 0 0 10446 1286 10720 37418 56185 56185 1 RYTIIPLNK EVTGKKLLERGELKRRYTIIPLNKISARCI RGELKRRYTIIPLNKISARCIAPETLRVAQ R R Y N K I 0 1 1 0 0 0 0 0 0 2 1 1 0 0 1 0 1 0 1 0 0 0 9 1 1116.6655 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 572 580 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.043396 51.854 1 0.58263 0.90374 NaN 1 Median NaN NaN NaN 0 0 Median 0.58263 0.90374 NaN 1 0 Median 5717900 3276500 2441400 0 0 0 5717900 3276500 2441400 10447 50 10721 37419 56186 56186 0 RYWEEETVPTTAGASPGPPR PPKKDKLQTKRKKPRRYWEEETVPTTAGAS ETVPTTAGASPGPPRNKKNRELRPQRPKNA R R Y P R N 2 2 0 0 0 0 3 2 0 0 0 0 0 0 4 1 3 1 1 1 0 0 20 1 2200.0549 B0UZZ8;O15213;A8K9A1;A8K806 B0UZZ8 27 46 C6orf11;WDR46 WD repeat-containing protein 46 yes no 3 0.013566 19.696 2 0.5643 0.75891 41.173 2 Median NaN NaN NaN 0 0 Median 0.5643 0.75891 41.173 2 0 Median 11439000 6264000 5175200 0 0 0 11439000 6264000 5175200 10448 668 10722 37420;37421 56187;56188;56189 56189 3 SAADSISESVPVGPK DDLDAEAAMDISEGRSAADSISESVPVGPK SAADSISESVPVGPKVRDGPGKYQLFAFIS R S A P K V 2 0 0 1 0 0 1 1 0 1 0 1 0 0 2 4 0 0 0 2 0 0 15 0 1442.7253 A0A140VJZ1;P45974 A0A140VJZ1 779 793 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 6.0644E-05 80.69 1 1 0.46151 0.58412 NaN 1 Median 0.46151 0.58412 NaN 1 0 Median NaN NaN NaN 0 0 Median 12610000 5251000 7359300 7266500 5251000 2015500 5343800 0 5343800 10449 505 10723 37422;37423 56190;56191 56191 2 SAAEMYGSSFDLDYDFQR AAEPKVNRGKAGVKRSAAEMYGSSFDLDYD EMYGSSFDLDYDFQRDYYDRMYSYPARVPP R S A Q R D 2 1 0 3 0 1 1 1 0 0 1 0 1 2 0 3 0 0 2 0 0 0 18 0 2100.8735 B2R5W2;G3V4C1;G3V4W0;B4DY08;B3KX96;G3V2D6;G3V5X6;G3V3K6;G3V251 B2R5W2 100 117 HNRNPC yes no 2 7.2819E-09 120.14 5 1 0.86276 1.2172 23.243 2 Median 1.0698 1.4346 NaN 1 0 Median 0.6958 1.0327 NaN 1 0 Median 19917000 12986000 6931000 5341700 4871100 470640 14575000 8115000 6460300 10450 694 10724;10725 37424;37425;37426;37427;37428;37429 56192;56193;56194;56195;56196;56197;56198 56195 246 6 SAAGYPDYYCK QYQIVERIIAHSNQKSAAGYPDYYCKWQGL SNQKSAAGYPDYYCKWQGLPYSECSWEDGA K S A C K W 2 0 0 1 1 0 0 1 0 0 0 1 0 0 1 1 0 0 3 0 0 0 11 0 1293.5336 O14646 O14646 402 412 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 0.00016598 94.309 4 0.65507 0.83177 7.1483 3 Median 0.65507 0.83177 7.1483 3 0 Median NaN NaN NaN 0 0 Median 27112000 15932000 11180000 27112000 15932000 11180000 0 0 0 10451 1169 10726 37430;37431;37432;37433 56199;56200;56201;56202;56203;56204 56201 6 SAALPIFSSFVSNWDEATKR EKWESVKLLFVKTEKSAALPIFSSFVSNWD IFSSFVSNWDEATKRSLLNKKKKEARRKRR K S A K R S 3 1 1 1 0 0 1 0 0 1 1 1 0 2 1 4 1 1 0 1 0 0 20 1 2225.1117 O76021;Q32Q62;J3QSV6;A0PJ61;A0PJ87;I3L3U9 O76021 258 277 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 3 1.4184E-07 70.99 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65497000 65497000 0 0 0 0 65497000 65497000 0 10452 1210 10727 37434;37435 56205;56206;56207 56206 3 SAAPSTLDSSSTAPAQLGK QQQLEKELNTLRVTRSAAPSTLDSSSTAPA STLDSSSTAPAQLGKKGKEFEFSQLPLKVE R S A G K K 4 0 0 1 0 1 0 1 0 0 2 1 0 0 2 5 2 0 0 0 0 0 19 0 1787.8901 Q549N5;Q9Y5M8;H7C4H2 Q549N5 209 227 SRPRB Signal recognition particle receptor subunit beta yes no 2 1.0282E-18 167.22 5 2 0.51752 0.65336 118.84 5 Median 0.51752 0.65014 11.878 3 0 Plateau 3.3311 5.028 0.98315 2 0 Median 49242000 25075000 24167000 25689000 19855000 5834200 23553000 5220400 18333000 10453 1545 10728 37436;37437;37438;37439;37440;37441;37442 56208;56209;56210;56211;56212;56213;56214;56215;56216;56217;56218;56219 56208 12 SAAQVCLCLGQLER TPRIRVWRQTLERCRSAAQVCLCLGQLERS RSAAQVCLCLGQLERSIAWEKSVNKVTCLV R S A E R S 2 1 0 0 2 2 1 1 0 0 3 0 0 0 0 1 0 0 0 1 0 0 14 0 1603.781 J3QK86;J3KPG5;F8VU39;Q9UIF9;A0A0C4DGI9 J3QK86 1621 1634 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 4.8085E-06 124.38 4 0.67126 0.88328 4.3036 3 Median 0.67126 0.88328 4.3036 3 0 Median NaN NaN NaN 0 0 Median 23606000 14998000 8608400 23606000 14998000 8608400 0 0 0 10454 1062 10729 37443;37444;37445;37446 56220;56221;56222;56223;56224;56225 56222 6 SAATLITHPFHVITLR FDHVIKETTREMIARSAATLITHPFHVITL AATLITHPFHVITLRSMVQFIGRESKYCGL R S A L R S 2 1 0 0 0 0 0 0 2 2 2 0 0 1 1 1 3 0 0 1 0 0 16 0 1776.0046 Q9Y6C9;Q53G34;E9PIE4 Q9Y6C9 132 147 MTCH2 Mitochondrial carrier homolog 2 yes no 3 3.5759E-07 74.12 2 2.9675 4.221 6.2036 2 Median NaN NaN NaN 0 0 Median 2.9675 4.221 6.2036 2 0 Median 24168000 6712900 17456000 0 0 0 24168000 6712900 17456000 10455 1833 10730 37447;37448 56226;56227 56226 2 SAATSGAGSTTSGVVSGSLGSR EDPCTLRHTMEKVVRSAATSGAGSTTSGVV GSTTSGVVSGSLGSREINYILRVLGPAACR R S A S R E 3 1 0 0 0 0 0 5 0 0 1 0 0 0 0 7 3 0 0 2 0 0 22 0 1895.9185 Q5H924;A0A024R9Y3;A0A024R9U8;A0A024R9W5;Q7Z6Z7 Q5H924 877 898 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 2 3.1039E-06 98.281 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1189100 1189100 0 1189100 1189100 0 0 0 0 10456 231 10731 37449 56228 56228 1 SACQVTAGGSSQCYR LPRRGTQPVGSLELKSACQVTAGGSSQCYR SACQVTAGGSSQCYRGHTNQDHVHAVWKIT K S A Y R G 2 1 0 0 2 2 0 2 0 0 0 0 0 0 0 3 1 0 1 1 0 0 15 0 1630.6828 A0A024R0F1;Q9UNY4 A0A024R0F1 510 524 TTF2 Transcription termination factor 2 yes no 2 1.682E-27 180.24 4 0.81182 1.1102 15.232 4 Median 0.81182 1.1102 15.232 4 0 Median NaN NaN NaN 0 0 Median 18657000 11072000 7584800 18657000 11072000 7584800 0 0 0 10457 33 10732 37450;37451;37452;37453 56229;56230;56231;56232;56233;56234;56235;56236 56229 8 SADESGQALLAAGHYASDEVR QEHKGEIDAHEDSFKSADESGQALLAAGHY QALLAAGHYASDEVREKLTVLSEERAALLE K S A V R E 5 1 0 2 0 1 2 2 1 0 2 0 0 0 0 3 0 0 1 1 0 0 21 0 2145.9927 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 419 439 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2;3 4.951E-13 117.18 2 0.76618 1.0434 NaN 1 Median 0.76618 1.0434 NaN 1 0 Median NaN NaN NaN 0 0 Median 13926000 8301800 5624500 13926000 8301800 5624500 0 0 0 10458 1476 10733 37454;37455 56237;56238;56239 56237 3 SADFNPDFVFTEK PIVLGRRQKALGKNRSADFNPDFVFTEKEG NRSADFNPDFVFTEKEGTYDGSWALADVMS R S A E K E 1 0 1 2 0 0 1 0 0 0 0 1 0 3 1 1 1 0 0 1 0 0 13 0 1515.6882 B7Z6D5;B3GQE6;Q96GQ7;Q3MI07;A0A087WYH5 B7Z6D5 48 60 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 1.5352E-12 161.19 4 2 0.8939 1.1312 5.7019 6 Median 0.91387 1.1453 1.2311 4 0 Median 0.64052 1.0246 2.7747 2 0 Median 290930000 165080000 125850000 168180000 90033000 78150000 122740000 75043000 47701000 10459 750 10734 37456;37457;37458;37459;37460;37461 56240;56241;56242;56243;56244;56245;56246;56247;56248;56249;56250;56251;56252;56253 56241 14 SADFSQSTSIGIK NRMIKSELEDFELDKSADFSQSTSIGIKNN DKSADFSQSTSIGIKNNICAFLVMGVCEVL K S A I K N 1 0 0 1 0 1 0 1 0 2 0 1 0 1 0 4 1 0 0 0 0 0 13 0 1339.662 H3BP78;F8W7R3;B3KNW8;B7ZMF2;Q9NVI1 H3BP78 553 565 FANCI Fanconi anemia group I protein yes no 2 0.0045241 98.898 2 1.2504 1.6445 NaN 1 Median 1.2504 1.6445 NaN 1 0 Median NaN NaN NaN 0 0 Median 2029400 952300 1077100 2029400 952300 1077100 0 0 0 10460 761 10735 37462;37463 56254;56255 56254 2 SADIALVAGGSR PFEEKVIQVRYDPCRSADIALVAGGSRKRW PCRSADIALVAGGSRKRWIIATENMQAGDT R S A S R K 3 1 0 1 0 0 0 2 0 1 1 0 0 0 0 2 0 0 0 1 0 0 12 0 1115.5935 C9IY40;Q5T653;B4DVE2 C9IY40 136 147 MRPL2 39S ribosomal protein L2, mitochondrial yes no 2 0.037626 46.352 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10461 932 10736 37464 56256 56256 1 SAEFLLHMLK QAKQWGWTQGRWPKKSAEFLLHMLKNAESN RWPKKSAEFLLHMLKNAESNAELKGLDVDS K S A L K N 1 0 0 0 0 0 1 0 1 0 3 1 1 1 0 1 0 0 0 0 0 0 10 0 1187.6373 A0A087WXM6;J3QQT2;J3KRX5;A0A024R261;A0A0A6YYL6;P18621;J3QLC8;A0A0A0MRF8;J3KRB3;A0A087WWH0;J3QS96;A0A087WY81 A0A087WXM6 87 96 RPL17;hCG_24487;RPL17-C18orf32 60S ribosomal protein L17 yes no 2;3 5.0186E-15 163.15 15 6 0.7123 0.90554 39.148 14 Median 0.8069 1.0245 12.194 9 0 Median 0.273 0.44347 21.709 5 0 Median 665670000 434170000 231500000 423890000 255350000 168550000 241770000 178830000 62947000 10462 81 10737;10738 37465;37466;37467;37468;37469;37470;37471;37472;37473;37474;37475;37476;37477;37478;37479;37480;37481;37482;37483;37484;37485 56257;56258;56259;56260;56261;56262;56263;56264;56265;56266;56267;56268;56269;56270;56271;56272;56273;56274;56275;56276;56277;56278;56279;56280;56281;56282;56283;56284;56285 56274 47 28 SAEHYTETALDEIR WDIQGKKFVAMKVVKSAEHYTETALDEIRL KSAEHYTETALDEIRLLKSVRNSDPNDPNR K S A I R L 2 1 0 1 0 0 3 0 1 1 1 0 0 0 0 1 2 0 1 0 0 0 14 0 1633.7584 Q96SB4;A0A024RCU9;H3BLV9;D6RBM8 Q96SB4 113 126 SRPK1 SRSF protein kinase 1 yes no 2;3 2.5795E-08 130.44 6 0.89464 1.2208 13.792 5 Median 0.89464 1.2208 13.792 5 0 Median NaN NaN NaN 0 0 Median 43055000 23561000 19494000 43055000 23561000 19494000 0 0 0 10463 1699 10739 37486;37487;37488;37489;37490;37491 56286;56287;56288;56289;56290;56291;56292 56289 7 SAENTILPEEETVVQNTSAGK KQRPKSSFLANKQERSAENTILPEEETVVQ LPEEETVVQNTSAGKDPLKVENSQVTVAVR R S A G K D 2 0 2 0 0 1 4 1 0 1 1 1 0 0 1 2 3 0 0 2 0 0 21 0 2216.0808 Q15058 Q15058 329 349 KIF14 Kinesin-like protein KIF14 yes yes 2 4.2945E-06 99.834 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1433000 1057900 375100 1433000 1057900 375100 0 0 0 10464 1504 10740 37492;37493;37494;37495 56293;56294;56295;56296 56296 4 SAENTILPEEETVVQNTSAGKDPLK KQRPKSSFLANKQERSAENTILPEEETVVQ ETVVQNTSAGKDPLKVENSQVTVAVRVRPF R S A L K V 2 0 2 1 0 1 4 1 0 1 2 2 0 0 2 2 3 0 0 2 0 0 25 1 2669.3396 Q15058 Q15058 329 353 KIF14 Kinesin-like protein KIF14 yes yes 3 3.2832E-10 99.387 3 0.69536 0.84811 37.846 2 Median 0.69536 0.84811 37.846 2 0 Median NaN NaN NaN 0 0 Median 15028000 9579600 5448900 15028000 9579600 5448900 0 0 0 10465 1504 10741 37496;37497;37498 56297;56298;56299;56300;56301 56300 4 SAEPGTETPQVNLSDLK LISNSHTDHLMGCTKSAEPGTETPQVNLSD EPGTETPQVNLSDLKASTLVHKPQSDFTND K S A L K A 1 0 1 1 0 1 2 1 0 0 2 1 0 0 2 2 2 0 0 1 0 0 17 0 1784.8792 B2RWP5 B2RWP5 449 465 NSD1 Histone-lysine N-methyltransferase yes yes 2 0.00013393 65.809 2 1.1065 1.4201 NaN 1 Median 1.1065 1.4201 NaN 1 0 Median NaN NaN NaN 0 0 Median 3861100 1912200 1948900 3861100 1912200 1948900 0 0 0 10466 749 10742 37499;37500 56302;56303 56303 2 SAFLQAFLGR SVLLCKVVGARGVGKSAFLQAFLGRGLGHQ RGVGKSAFLQAFLGRGLGHQDTREQPPGYA K S A G R G 2 1 0 0 0 1 0 1 0 0 2 0 0 2 0 1 0 0 0 0 0 0 10 0 1108.6029 Q8IXI1 Q8IXI1 430 439 RHOT2 Mitochondrial Rho GTPase 2 yes yes 2 0.00048015 111.95 3 0.35027 0.47918 10.419 2 Median 0.35027 0.47918 10.419 2 0 Median NaN NaN NaN 0 0 Median 6120500 4426100 1694400 6120500 4426100 1694400 0 0 0 10467 1626 10743 37501;37502;37503 56304;56305;56306;56307 56307 4 SAGEEEDGPVLTDEQK QVEALPGPSLDQWHRSAGEEEDGPVLTDEQ AGEEEDGPVLTDEQKSRIQAMKPMTKEEWD R S A Q K S 1 0 0 2 0 1 4 2 0 0 1 1 0 0 1 1 1 0 0 1 0 0 16 0 1702.7534 F5GYV5;H7BZV4;B2RE15;A0A0C4DG62;F8WCT1;F5H7X4;Q8TEM4;Q66PJ3 F5GYV5 140 155 ARL6IP4;FLJ00169 ADP-ribosylation factor-like protein 6-interacting protein 4 yes no 2 4.2485E-15 152.47 3 2 0.68768 1.0987 18.431 3 Plateau 0.98755 1.2888 NaN 1 0 Median 0.6823 0.93657 0.0064262 2 0 Median 16144000 10129000 6014600 7521800 5073400 2448400 8621700 5055500 3566200 10468 423 10744 37504;37505;37506;37507;37508 56308;56309;56310;56311;56312;56313;56314 56309 7 SAGQGEVLVYVEDPAGHQEEAK GNMVKKRAEFTVETRSAGQGEVLVYVEDPA LVYVEDPAGHQEEAKVTANNDKNRTFSVWY R S A A K V 3 0 0 1 0 2 4 3 1 0 1 1 0 0 1 1 0 0 1 3 0 0 22 0 2312.0921 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98 P21333 310 331 FLNA Filamin-A yes no 2;3 1.7506E-39 172.99 6 2 0.91487 1.1624 43.23 6 Median 0.90046 1.1608 18.729 5 0 Median 2.1555 3.2493 NaN 1 0 Median 275600000 139450000 136140000 247860000 133600000 114260000 27739000 5853400 21886000 10469 1287 10745 37509;37510;37511;37512;37513;37514;37515;37516 56315;56316;56317;56318;56319;56320;56321;56322;56323;56324;56325;56326;56327;56328;56329 56317 15 SAGVQCFGPTAEAAQLESSK GPEAPLAAGIVGNLRSAGVQCFGPTAEAAQ CFGPTAEAAQLESSKRFAKEFMDRHGIPTA R S A S K R 4 0 0 0 1 2 2 2 0 0 1 1 0 1 1 3 1 0 0 1 0 0 20 0 2036.9473 Q3B7A7;Q59HH3;P22102;Q15374;F8WD69;C9JBJ1;C9JTV6;C9JZG2;C9JKQ7 Q3B7A7 88 107 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 8.2494E-144 276.34 4 1 0.68943 0.92539 178.44 2 Median 0.20727 0.26202 NaN 1 0 Median 2.2932 3.2682 NaN 1 0 Median 31230000 25288000 5942100 24972000 23305000 1667100 6257900 1982900 4275000 10470 1289 10746 37517;37518;37519;37520;37521 56330;56331;56332;56333;56334;56335 56332 6 SAGVQCFGPTAEAAQLESSKR GPEAPLAAGIVGNLRSAGVQCFGPTAEAAQ FGPTAEAAQLESSKRFAKEFMDRHGIPTAQ R S A K R F 4 1 0 0 1 2 2 2 0 0 1 1 0 1 1 3 1 0 0 1 0 0 21 1 2193.0484 Q3B7A7;Q59HH3;P22102;Q15374;F8WD69;C9JBJ1;C9JTV6;C9JZG2;C9JKQ7 Q3B7A7 88 108 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 3 3.3227E-05 114.75 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2718900 2718900 0 2718900 2718900 0 0 0 0 10471 1289 10747 37522 56336 56336 1 SAHIQASGHLEEQTPR TIARGRSHGARSVGRSAHIQASGHLEEQTP AHIQASGHLEEQTPRTLLKNILLTAPESSI R S A P R T 2 1 0 0 0 2 2 1 2 1 1 0 0 0 1 2 1 0 0 0 0 0 16 0 1759.8602 H3BUW2;H3BTR4;B3KPB2;Q96BT3;A8K662;H3BQJ0;I3L4F8 H3BUW2 72 87 CENPT Centromere protein T yes no 2;3 0.0001155 101.04 4 1 0.60622 0.81359 6.6408 3 Median 0.56781 0.76925 7.925 2 0 Median 0.62636 0.81823 NaN 1 0 Median 32460000 22703000 9757200 28313000 20205000 8107300 4147200 2497300 1649900 10472 764 10748 37523;37524;37525;37526;37527 56337;56338;56339;56340;56341;56342;56343 56341 7 SAHLQWMVVR ______________________________ ______________________________ M S A V R N 1 1 0 0 0 1 0 0 1 0 1 0 1 0 0 1 0 1 0 2 0 0 10 0 1225.639 P46779;H0YKD8;H0YMF4;H0YLP6 P46779 2 11 RPL28 60S ribosomal protein L28 yes no 2 0.014858 47.823 1 0.67611 0.94255 NaN 1 Median NaN NaN NaN 0 0 Median 0.67611 0.94255 NaN 1 0 Median 6240900 3700400 2540500 0 0 0 6240900 3700400 2540500 10473 1346 10749 37528 56344 56344 1 SAHTLGPTPSR SSGSEEDGEGPQGAKSAHTLGPTPSRTETL QGAKSAHTLGPTPSRTETLVEETAAESSED K S A S R T 1 1 0 0 0 0 0 1 1 0 1 0 0 0 2 2 2 0 0 0 0 0 11 0 1122.5782 J3KQ96;Q13428 J3KQ96 1130 1140 TCOF1 Treacle protein no no 2 0.0054586 68.847 1 0.97809 1.2567 NaN 1 Median NaN NaN NaN 0 0 Median 0.97809 1.2567 NaN 1 0 Median 3202800 1555600 1647300 0 0 0 3202800 1555600 1647300 10474 1135;1469 10750 37529 56345;56346 56346 2 SAHTLVGPTPSR SSGSEEDGEGPQGAKSAHTLVGPTPSRTET GAKSAHTLVGPTPSRTETLVEETAAESSED K S A S R T 1 1 0 0 0 0 0 1 1 0 1 0 0 0 2 2 2 0 0 1 0 0 12 0 1221.6466 E7ETY2 E7ETY2 1167 1178 TCOF1 yes yes 2;3 2.3392E-07 97.456 5 4 0.92709 1.3385 9.895 8 Median 0.93825 1.3014 10.966 4 0 Median 0.92709 1.3787 9.716 4 0 Median 85188000 42769000 42419000 23040000 11663000 11377000 62148000 31106000 31043000 10475 1016 10751 37530;37531;37532;37533;37534;37535;37536;37537;37538 56347;56348;56349;56350;56351;56352;56353;56354;56355;56356;56357;56358;56359;56360;56361 56361 15 SAHVTVSGGTPK DNEHKRSLTKTPARKSAHVTVSGGTPKGEA ARKSAHVTVSGGTPKGEAVLGTHKLKTITG K S A P K G 1 0 0 0 0 0 0 2 1 0 0 1 0 0 1 2 2 0 0 2 0 0 12 0 1139.5935 Q9BXS6;A8K4B4 Q9BXS6 305 316 NUSAP1 Nucleolar and spindle-associated protein 1 yes no 2;3 1.1128E-11 158.47 1 3 0.33185 0.48092 12.353 4 Median 0.37856 0.49189 NaN 1 0 Median 0.32041 0.48497 13.781 3 0 Plateau 17269000 12841000 4428200 1878200 1196200 681990 15391000 11645000 3746200 10476 1723 10752 37539;37540;37541;37542 56362;56363;56364;56365 56362 4 SAIDLTPIVVEDK TEPKGAADVEKVEEKSAIDLTPIVVEDKEE EKSAIDLTPIVVEDKEEKKEEEEKKEVMLQ K S A D K E 1 0 0 2 0 0 1 0 0 2 1 1 0 0 1 1 1 0 0 2 0 0 13 0 1398.7606 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 1622 1634 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 2.1376E-08 149.33 5 2 0.67675 0.8624 41.258 6 Median 0.63047 0.79198 10.533 4 0 Median 1.0911 1.7376 4.4298 2 0 Median 156050000 76260000 79792000 49174000 27502000 21672000 106880000 48758000 58120000 10477 428 10753 37543;37544;37545;37546;37547;37548;37549 56366;56367;56368;56369;56370;56371;56372;56373;56374 56368 8 SAIDLTPIVVEDKEEK TEPKGAADVEKVEEKSAIDLTPIVVEDKEE AIDLTPIVVEDKEEKKEEEEKKEVMLQNGE K S A E K K 1 0 0 2 0 0 3 0 0 2 1 2 0 0 1 1 1 0 0 2 0 0 16 1 1784.9408 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 1622 1637 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2;3 0.0021624 54.524 1 3 0.99902 1.5744 29.423 4 Median 0.76921 0.94276 NaN 1 0 Median 1.0442 1.6541 10.206 3 0 Median 79015000 43588000 35427000 34730000 21709000 13021000 44285000 21879000 22407000 10478 428 10754 37550;37551;37552;37553 56375;56376;56377;56378 56375 4 SAINEVVTR ______________________________ ______________________________ R S A T R E 1 1 1 0 0 0 1 0 0 1 0 0 0 0 0 1 1 0 0 2 0 0 9 0 987.53491 H7C2W9;C9JU56;B7Z4E3;B2R4C1;B7Z4C8;P62899;B8ZZK4 H7C2W9 3 11 RPL31 60S ribosomal protein L31 yes no 2 3.4288E-05 153.24 4 2 0.80888 1.1158 31.22 6 Median 0.81174 1.1224 5.0459 4 0 Median 0.37892 0.63061 3.7259 2 0 Median 4039700000 2312300000 1727500000 3250400000 1744300000 1506100000 789330000 568010000 221320000 10479 682 10755 37554;37555;37556;37557;37558;37559 56379;56380;56381;56382;56383;56384;56385;56386;56387;56388;56389;56390 56379 12 SAIYQLEEEYENLLK YRWQLDKIKADLREKSAIYQLEEEYENLLK SAIYQLEEEYENLLKASFERMDHLRQLQNI K S A L K A 1 0 1 0 0 1 4 0 0 1 3 1 0 0 0 1 0 0 2 0 0 0 15 0 1840.9095 P15924;Q4LE79;B4E2A0;B4DKX6;B4DWT7 P15924 246 260 DSP;DSP variant protein Desmoplakin yes no 2 3.3935E-07 94.688 4 0.31157 0.39344 13.298 3 Median 0.31157 0.39344 13.298 3 0 Median NaN NaN NaN 0 0 Median 35431000 27448000 7982600 35431000 27448000 7982600 0 0 0 10480 1270 10756 37560;37561;37562;37563 56391;56392;56393;56394 56394 4 SALAFLNR MCDTSGSIQLSEEQKSALAFLNRGQPSSSN QLSEEQKSALAFLNRGQPSSSNAGNKRLST K S A N R G 2 1 1 0 0 0 0 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 8 0 890.4974 B2RE34;A0A024R136;Q9H0H5;F8VRD2;F8VWY4;F8VVE5;F8VWX0;F8W0L1;F8VZ66;F8VV47;F8VQZ5;F8VV37;F8W1E5;F8VYH6;F8W1T4;Q9BZ74;F8VQF5 B2RE34 123 130 RACGAP1;FKSG42 Rac GTPase-activating protein 1 yes no 2 0.0076892 74.415 2 0.82968 1.1268 NaN 1 Median 0.82968 1.1268 NaN 1 0 Median NaN NaN NaN 0 0 Median 14634000 10631000 4002100 14634000 10631000 4002100 0 0 0 10481 49 10757 37564;37565 56395;56396 56396 2 SALGFIK NVCLLLASRTRDVVKSALGFIKVAVTVMDV SRTRDVVKSALGFIKVAVTVMDVAHLAKHV K S A I K V 1 0 0 0 0 0 0 1 0 1 1 1 0 1 0 1 0 0 0 0 0 0 7 0 734.43268 B3KMR5;Q5JTH9;B3KY97 B3KMR5 961 967 RRP12 RRP12-like protein yes no 2 0.046317 52.299 1 0.84148 1.0683 NaN 1 Median 0.84148 1.0683 NaN 1 0 Median NaN NaN NaN 0 0 Median 9655400 3798500 5856800 9655400 3798500 5856800 0 0 0 10482 756 10758 37566 56397 56397 1 SALQILFSEDSTK NISLKRVSKMPAFLRSALQILFSEDSTKLF LRSALQILFSEDSTKLFVASNQGALHIVQL R S A T K L 1 0 0 1 0 1 1 0 0 1 2 1 0 1 0 3 1 0 0 0 0 0 13 0 1437.7351 Q969X6;H3BSH7;A0A0J9YWM9;H3BRM8;A0A0J9YWK2 Q969X6 439 451 CIRH1A Cirhin yes no 2 8.4992E-30 176.78 4 2 0.80118 1.0944 11.447 6 Median 0.8936 1.1241 12.62 4 0 Median 0.64101 1.0103 9.5143 2 0 Median 202250000 109510000 92736000 138250000 73339000 64914000 63991000 36170000 27821000 10483 1680 10759 37567;37568;37569;37570;37571;37572 56398;56399;56400;56401;56402;56403;56404;56405;56406;56407;56408;56409;56410 56403 13 SALQVLVSILK MLRRRIRDEKTNVRKSALQVLVSILKHCDV NVRKSALQVLVSILKHCDVSGMKEDLWILQ K S A L K H 1 0 0 0 0 1 0 0 0 1 3 1 0 0 0 2 0 0 0 2 0 0 11 0 1169.7384 P42695;G3V1A9;E9PKK4 P42695 560 570 NCAPD3 Condensin-2 complex subunit D3 yes no 2 1.0715E-11 137.98 3 0.77742 0.96518 18.13 3 Median 0.77742 0.96518 18.13 3 0 Median NaN NaN NaN 0 0 Median 46601000 26514000 20087000 46601000 26514000 20087000 0 0 0 10484 1338 10760 37573;37574;37575 56411;56412;56413;56414;56415;56416 56413 6 SALSCVISK LIAYYKENKDREDKRSALSCVISKTARLLS DREDKRSALSCVISKTARLLSSEDRARLPE R S A S K T 1 0 0 0 1 0 0 0 0 1 1 1 0 0 0 3 0 0 0 1 0 0 9 0 963.50592 Q9UIG0 Q9UIG0 493 501 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.040486 45.161 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12071000 0 12071000 12071000 0 12071000 0 0 0 10485 1786 10761 37576 56417 56417 1 SALSGHLETVILGLLK AYQRRTKKELASALKSALSGHLETVILGLL ALSGHLETVILGLLKTPAQYDASELKASMK K S A L K T 1 0 0 0 0 0 1 2 1 1 5 1 0 0 0 2 1 0 0 1 0 0 16 0 1649.9716 H0YKS4;H0YMD0;H0YMU9;H0YN42;V9HW65;A0A024R5Z7;P07355;H0YMM1;B4DNH8;A6NMY6;H0YKL9;H0YKZ7;H0YLV6;H0YMT9;H0YKX9;H0YMW4;H0YM50;H0YNP5 H0YKS4 89 104 ANXA2;HEL-S-270;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 3 0.00027047 44.807 1 0.37975 0.46836 NaN 1 Median 0.37975 0.46836 NaN 1 0 Median NaN NaN NaN 0 0 Median 26374000 18348000 8026100 26374000 18348000 8026100 0 0 0 10486 153 10762 37577 56418 56418 1 SALTVQFVQGIFVEK REYKLVVLGSGGVGKSALTVQFVQGIFVEK SALTVQFVQGIFVEKYDPTIEDSYRKQVEV K S A E K Y 1 0 0 0 0 2 1 1 0 1 1 1 0 2 0 1 1 0 0 3 0 0 15 0 1664.9138 Q5U0C3;A8KAH9;A0A024RB87;P62834;P61224;F5H4H0;F5GYH7;F5H077;F5GWU8;F5H491;F5H0B7;F5H500;F5H6R7;F5H004;A0A075B6Q0;F5GYB5;F5GX62;Q9BXV4;E7ESV4;F5H7Y6;F8WBC0;A0A0J9YXB3;A6NIZ1 Q5U0C3 17 31 RAP1A;RAP1B Ras-related protein Rap-1A;Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein yes no 2 2.0952E-49 210.93 4 0.64861 0.80954 0.53893 2 Median 0.64861 0.80954 0.53893 2 0 Median NaN NaN NaN 0 0 Median 58771000 38544000 20227000 58771000 38544000 20227000 0 0 0 10487 265 10763 37578;37579;37580;37581 56419;56420;56421;56422;56423 56420 5 SALTVQFVTGTFIEK REYKVVVLGSGGVGKSALTVQFVTGTFIEK SALTVQFVTGTFIEKYDPTIEDFYRKEIEV K S A E K Y 1 0 0 0 0 1 1 1 0 1 1 1 0 2 0 1 3 0 0 2 0 0 15 0 1639.8821 F6U784;Q9Y3L5;P10114 F6U784 17 31 RAP2A;RAP2C Ras-related protein Rap-2c;Ras-related protein Rap-2a yes no 2 0.00095601 91.858 1 0.38414 0.47212 NaN 1 Median 0.38414 0.47212 NaN 1 0 Median NaN NaN NaN 0 0 Median 1378300 1104800 273570 1378300 1104800 273570 0 0 0 10488 1059 10764 37582 56424 56424 1 SANNTPENSPNFPNFR FVELLSPRRKRRGRKSANNTPENSPNFPNF ANNTPENSPNFPNFRVIATKSSEQSRSVNI K S A F R V 1 1 5 0 0 0 1 0 0 0 0 0 0 2 3 2 1 0 0 0 0 0 16 0 1804.8129 D3DS96;Q9NRL2;Q59G54 D3DS96 1362 1377 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A no no 2 0.0028254 103.43 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1390700 1390700 0 1390700 1390700 0 0 0 0 10489 979 10765 37583 56425 56425 1 SANYCFASR YMFGKGIYFADMSSKSANYCFASRLKNTGL ADMSSKSANYCFASRLKNTGLLLLSEVRQE K S A S R L 2 1 1 0 1 0 0 0 0 0 0 0 0 1 0 2 0 0 1 0 0 0 9 0 1074.4553 B4DV82;G3V167;A8K214;Q9UGN5;H0YH02 B4DV82 383 391 PARP2 Poly [ADP-ribose] polymerase 2 yes no 2 0.00035329 78.334 2 0.28419 0.37707 NaN 1 Median 0.28419 0.37707 NaN 1 0 Median NaN NaN NaN 0 0 Median 6405000 4875800 1529300 6405000 4875800 1529300 0 0 0 10490 581 10766 37584;37585 56426;56427 56427 2 SAPDTQERPPVR GKFGPARKSGSRQKKSAPDTQERPPVRATG QKKSAPDTQERPPVRATGARAKKAPQRAQD K S A V R A 1 2 0 1 0 1 1 0 0 0 0 0 0 0 3 1 1 0 0 1 0 0 12 1 1351.6844 Q8N884 Q8N884 64 75 MB21D1 Cyclic GMP-AMP synthase yes yes 2;3 1.7385E-10 131.52 7 3 0.94642 1.2883 9.8546 10 Median 1.033 1.3896 9.9084 7 0 Median 0.8251 1.2533 3.955 3 0 Median 367800000 181210000 186600000 284060000 135230000 148830000 83739000 45971000 37768000 10491 1643 10767 37586;37587;37588;37589;37590;37591;37592;37593;37594;37595 56428;56429;56430;56431;56432;56433;56434;56435;56436;56437;56438;56439;56440;56441;56442 56437 15 SAPFFIPTIPGLVPR IKKKNKPKEPPKVPKSAPFFIPTIPGLVPR SAPFFIPTIPGLVPRYAAPEQNNDPQQSKV K S A P R Y 1 1 0 0 0 0 0 1 0 2 1 0 0 2 4 1 1 0 0 1 0 0 15 0 1610.9184 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 730 744 WDR36 WD repeat-containing protein 36 yes no 2 6.7701E-05 100.09 3 0.98674 1.3645 7.9731 3 Plateau 0.98674 1.3645 7.9731 3 0 Plateau NaN NaN NaN 0 0 Median 221150000 106570000 114580000 221150000 106570000 114580000 0 0 0 10492 404 10768 37596;37597;37598 56443;56444;56445 56443 2 SAPLEIGLQR GYLNGEASTSASIDRSAPLEIGLQRSTQVK ASIDRSAPLEIGLQRSTQVKRAADEVLAEA R S A Q R S 1 1 0 0 0 1 1 1 0 1 2 0 0 0 1 1 0 0 0 0 0 0 10 0 1082.6084 Q6P1J9;A0A1B0GUB2;B4DV47 Q6P1J9 111 120 CDC73 Parafibromin yes no 2 0.009638 82.426 4 0.69869 0.93083 NaN 1 Median 0.69869 0.93083 NaN 1 0 Median NaN NaN NaN 0 0 Median 33129000 23624000 9505600 33129000 23624000 9505600 0 0 0 10493 1590 10769 37599;37600;37601;37602 56446;56447;56448;56449;56450;56451 56450 6 SAPTAPTPPPPPPPATPR PEENGNLGKIPVKTRSAPTAPTPPPPPPPA TAPTPPPPPPPATPRKNKAAMCKPLMQNRG R S A P R K 3 1 0 0 0 0 0 0 0 0 0 0 0 0 10 1 3 0 0 0 0 0 18 0 1747.9257 A6NHN7;A6NHB5;Q14202 A6NHN7 813 830 ZMYM3 Zinc finger MYM-type protein 3 yes no 2 0.0044767 35.204 1 0.68807 0.91249 NaN 1 Median 0.68807 0.91249 NaN 1 0 Median NaN NaN NaN 0 0 Median 6431200 2265900 4165400 6431200 2265900 4165400 0 0 0 10494 565 10770 37603 56452;56453 56453 2 SAPVMLTLSDSK ______________________________ ______________________________ K S A S K H 1 0 0 1 0 0 0 0 0 0 2 1 1 0 1 3 1 0 0 1 0 0 12 0 1247.6431 B4DLF8;A0A024R9B5;B4DMM7;Q15291 B4DLF8 3 14 RBBP5 Retinoblastoma-binding protein 5 yes no 2 0.0045609 45.433 1 0.61957 0.94096 NaN 1 Median NaN NaN NaN 0 0 Median 0.61957 0.94096 NaN 1 0 Median 10421000 6385100 4036200 0 0 0 10421000 6385100 4036200 10495 215 10771 37604 56454 56454 92 1 SAQFEHTLLVTDTGCEILTR TWPDGWTAVTRDGKRSAQFEHTLLVTDTGC HTLLVTDTGCEILTRRLDSARPHFMSQF__ R S A T R R 1 1 0 1 1 1 2 1 1 1 3 0 0 1 0 1 4 0 0 1 0 0 20 0 2290.1263 P53582;H0Y903;H0Y955;Q5CZ91 P53582 354 373 METAP1;DKFZp781C0419 Methionine aminopeptidase 1 yes no 3 0.00025417 40.723 1 0.2301 0.3287 NaN 1 Median NaN NaN NaN 0 0 Median 0.2301 0.3287 NaN 1 0 Median 10421000 9278900 1141700 0 0 0 10421000 9278900 1141700 10496 1369 10772 37605 56455 56455 1 SAQHYTETALDEIK WDMQGKRFVAMKVVKSAQHYTETALDEIKL KSAQHYTETALDEIKLLKCVRESDPSDPNK K S A I K L 2 0 0 1 0 1 2 0 1 1 1 1 0 0 0 1 2 0 1 0 0 0 14 0 1604.7682 A0A024R704;P78362;C9J2M4;C9JWF7 A0A024R704 114 127 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal yes no 3 0.027721 47.113 1 0.91519 1.1555 NaN 1 Median 0.91519 1.1555 NaN 1 0 Median NaN NaN NaN 0 0 Median 3169000 1597500 1571500 3169000 1597500 1571500 0 0 0 10497 166 10773 37606 56456 56456 1 SAQIADLQQK ITKQIESLETEMEFRSAQIADLQQKLLDAE EMEFRSAQIADLQQKLLDAESEDRPKQRWE R S A Q K L 2 0 0 1 0 3 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1100.5826 Q59HG1;O95239;B4DYE2;Q2VIQ3;B3KNC0 Q59HG1 834 843 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 2.4809E-05 134.26 4 2 0.79751 1.0768 6.4794 6 Median 0.84277 1.0905 8.3267 4 0 Median 0.70671 1.0738 1.2988 2 0 Median 165090000 92665000 72422000 121010000 66684000 54329000 44074000 25981000 18093000 10498 1216 10774 37607;37608;37609;37610;37611;37612 56457;56458;56459;56460;56461;56462;56463;56464;56465;56466;56467 56461 11 SAQQEASADVATPK KTRTRGQRIQNVNVKSAQQEASADVATPKM KSAQQEASADVATPKMPGQSVRKKTRKAKE K S A P K M 4 0 0 1 0 2 1 0 0 0 0 1 0 0 1 2 1 0 0 1 0 0 14 0 1401.6736 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1753 1766 AHCTF1 Protein ELYS yes no 2 7.3157E-68 193.62 4 2 0.68215 0.96719 11.629 4 Median 0.85964 1.0858 7.6527 2 0 Median 0.56322 0.90157 1.2326 2 0 Median 185190000 105020000 80172000 85111000 41399000 43712000 100080000 63620000 36460000 10499 1670 10775 37613;37614;37615;37616;37617;37618 56468;56469;56470;56471;56472;56473;56474;56475;56476 56470 9 SASAPAAEGEGTPTQPASEK ______________________________ AAEGEGTPTQPASEKEPEMPGPREESEEEE M S A E K E 5 0 0 0 0 1 3 2 0 0 0 1 0 0 3 3 2 0 0 0 0 0 20 0 1884.8701 P35659;B4DFG0 P35659 2 21 DEK Protein DEK yes no 2 1.3707E-52 205.26 4 2 0.65425 0.81985 21.153 5 Median 0.81829 1.0763 17.136 3 0 Median 0.45954 0.72717 1.7536 2 0 Median 82608000 52930000 29678000 16663000 9765800 6897000 65945000 43164000 22781000 10500 1322 10776 37619;37620;37621;37622;37623;37624 56477;56478;56479;56480;56481;56482;56483;56484;56485 56482 8 SASLCAATLAAVLQR DCVATHRICQIVSTRSASLCAATLAAVLQR SASLCAATLAAVLQRIKENKGEERLRSTIG R S A Q R I 5 1 0 0 1 1 0 0 0 0 3 0 0 0 0 2 1 0 0 1 0 0 15 0 1530.8188 E9PB90;A8K2U2;P52789;Q68E10;Q53QX9 E9PB90 354 368 HK2;DKFZp686M1669 Hexokinase;Hexokinase-2 yes no 2 2.4348E-06 120.96 1 0.38147 0.52308 NaN 1 Median 0.38147 0.52308 NaN 1 0 Median NaN NaN NaN 0 0 Median 1560000 1208300 351700 1560000 1208300 351700 0 0 0 10501 585 10777 37625 56486 56486 1 SASSNSAEAGGDTVTLDDILSLK LEAIVQKITSPNIRRSASSNSAEAGGDTVT AGGDTVTLDDILSLKSGPPEGGSVAVQDAD R S A L K S 3 0 1 3 0 0 1 2 0 1 3 1 0 0 0 5 2 0 0 1 0 0 23 0 2250.0863 W5ZR30;Q9UGU0 W5ZR30 1367 1389 TCF20 Transcription factor 20 yes no 2 3.3783E-48 179.66 3 1.0863 1.4256 16.793 3 Median 1.0863 1.4256 16.793 3 0 Median NaN NaN NaN 0 0 Median 12034000 5172300 6861600 12034000 5172300 6861600 0 0 0 10502 1783 10778 37626;37627;37628 56487;56488;56489;56490;56491;56492 56490 6 SATNLPQLK RFPRCTRIRDDKDWKSATNLPQLKELYQLS DDKDWKSATNLPQLKELYQLSKEKADFTVV K S A L K E 1 0 1 0 0 1 0 0 0 0 2 1 0 0 1 1 1 0 0 0 0 0 9 0 970.54475 P49916;B7Z6I3 P49916 818 826 LIG3 DNA ligase 3;DNA ligase yes no 2 0.019075 53.166 1 1 0.97562 1.2809 9.1412 2 Median 0.95269 1.2007 NaN 1 0 Median 0.9991 1.3664 NaN 1 0 Median 20851000 11952000 8899100 17010000 10286000 6723700 3841400 1666100 2175400 10503 1356 10779 37629;37630 56493;56494 56493 2 SATVTRLEDLLQDAQDEK QKLQEALRRKYSCDRSATVTRLEDLLQDAQ VTRLEDLLQDAQDEKEQLNEYKGHLSGLAK R S A E K E 2 1 0 3 0 2 2 0 0 0 3 1 0 0 0 1 2 0 0 1 0 0 18 1 2031.012 Q15149 Q15149 891 908 PLEC Plectin yes yes 3 2.32E-05 97.352 4 1.0166 1.3293 10.089 4 Median 1.0166 1.3293 10.089 4 0 Median NaN NaN NaN 0 0 Median 33515000 16446000 17069000 33515000 16446000 17069000 0 0 0 10504 1507 10780 37631;37632;37633;37634 56495;56496;56497;56498 56496 4 SAVAGFLLLLK VLRKAMFANQLDARKSAVAGFLLLLKNFKV DARKSAVAGFLLLLKNFKVLGSLSSSQCSQ K S A L K N 2 0 0 0 0 0 0 1 0 0 4 1 0 1 0 1 0 0 0 1 0 0 11 0 1130.7063 H3BP78;F8W7R3;B3KNW8;B7ZMF2;Q9NVI1 H3BP78 362 372 FANCI Fanconi anemia group I protein yes no 2 0.0010389 69.423 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10505 761 10781 37635 56499 56499 1 SAVCIADPLPTPSQEK LEEIKAACQCVEPIKSAVCIADPLPTPSQE AVCIADPLPTPSQEKSQTELPDEKIGKKRK K S A E K S 2 0 0 1 1 1 1 0 0 1 1 1 0 0 3 2 1 0 0 1 0 0 16 0 1711.8451 Q96F88;Q99575 Q96F88 355 370 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 1.1001E-06 98.368 4 0.33788 0.42873 9.53 4 Median 0.33788 0.42873 9.53 4 0 Median NaN NaN NaN 0 0 Median 25112000 17749000 7363000 25112000 17749000 7363000 0 0 0 10506 1685 10782 37636;37637;37638;37639 56500;56501;56502;56503;56504;56505;56506;56507 56506 8 SAVGFDYQGK GFGGKYGVQADRVDKSAVGFDYQGKTEKHE DRVDKSAVGFDYQGKTEKHESQRDYSKGFG K S A G K T 1 0 0 1 0 1 0 2 0 0 0 1 0 1 0 1 0 0 1 1 0 0 10 0 1070.5033 A0A024R5M3;Q53HG7;Q14247;Q76MU0 A0A024R5M3 172 181 CTTN;EMS1 Src substrate cortactin yes no 2 0.0067333 57.96 2 0.88747 1.1111 NaN 1 Median 0.88747 1.1111 NaN 1 0 Median NaN NaN NaN 0 0 Median 7722200 4137200 3584900 7722200 4137200 3584900 0 0 0 10507 147 10783 37640;37641 56508;56509 56508 2 SAVGFEYQGK GFGGKFGVQMDRVDQSAVGFEYQGKTEKHA DRVDQSAVGFEYQGKTEKHASQKDYSSGFG Q S A G K T 1 0 0 0 0 1 1 2 0 0 0 1 0 1 0 1 0 0 1 1 0 0 10 0 1084.5189 A0A024R5M3;Q53HG7;Q14247;Q76MU0;A0A0B6XJY7 A0A024R5M3 135 144 CTTN;EMS1 Src substrate cortactin yes no 2 0.010807 83.998 1 1.1132 1.4015 NaN 1 Median 1.1132 1.4015 NaN 1 0 Median NaN NaN NaN 0 0 Median 2915500 1485100 1430400 2915500 1485100 1430400 0 0 0 10508 147 10784 37642 56510 56510 1 SAYEAGIQALKPPDAPGPDEAPK PRGPGGPLRSASPHRSAYEAGIQALKPPDA ALKPPDAPGPDEAPKGAHHKKYGSNVHRIK R S A P K G 5 0 0 2 0 1 2 2 0 1 1 2 0 0 5 1 0 0 1 0 0 0 23 1 2321.1539 D3DTX6;Q96SB3 D3DTX6 21 43 PPP1R9B Neurabin-2 yes no 3 0.031991 14.944 1 0.82964 0.99706 NaN 1 Median 0.82964 0.99706 NaN 1 0 Median NaN NaN NaN 0 0 Median 4610300 2509600 2100800 4610300 2509600 2100800 0 0 0 10509 980 10785 37643 56511 56511 1 SAYGGPVGAGIR SLYGLGASRPRVAVRSAYGGPVGAGIREVT AVRSAYGGPVGAGIREVTINQSLLAPLRLD R S A I R E 2 1 0 0 0 0 0 4 0 1 0 0 0 0 1 1 0 0 1 1 0 0 12 0 1103.5724 CON__P08729;CON__Q3KNV1;P08729 CON__Q3KNV1 53 64 KRT7 Keratin, type II cytoskeletal 7 no no 2 0.00049226 73.233 1 0.68251 0.9487 NaN 1 Median 0.68251 0.9487 NaN 1 0 Median NaN NaN NaN 0 0 Median 62198000 37723000 24475000 62198000 37723000 24475000 0 0 0 + 10510 968;957 10786 37644 56512;56513 56512 2 SAYLHPQQFDCEPGVLGSK LSEDWKCVTYTSLYKSAYLHPQQFDCEPGV HPQQFDCEPGVLGSKGFTWGKVYWEVEVER K S A S K G 1 0 0 1 1 2 1 2 1 0 2 1 0 1 2 2 0 0 1 1 0 0 19 0 2131.9997 A0A024RCP3;Q12899 A0A024RCP3 343 361 TRIM26 Tripartite motif-containing protein 26 yes no 3 0.00045447 71.969 2 0.62948 0.80976 20.928 2 Median 0.62948 0.80976 20.928 2 0 Median NaN NaN NaN 0 0 Median 15718000 10989000 4729300 15718000 10989000 4729300 0 0 0 10511 299 10787 37645;37646 56514;56515;56516;56517 56515 4 SAYNVYVAER KKKELTLLGKPKRPRSAYNVYVAERFQEAK PKRPRSAYNVYVAERFQEAKGDSPQEKLKT R S A E R F 2 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 2 2 0 0 10 0 1170.5669 Q6LES8;E5KSX8;E5KSU5;Q00059;H7BYN3 Q6LES8 160 169 TFAM Transcription factor A, mitochondrial yes no 2 1.7429E-06 120.22 3 1 0.72192 0.97988 40.017 4 Median 0.69851 0.96579 6.2976 3 0 Median 1.3691 2.0917 NaN 1 0 Median 108580000 58907000 49668000 90664000 50951000 39713000 17911000 7956100 9955300 10512 1002 10788 37647;37648;37649;37650 56518;56519;56520;56521 56520 4 SCDGNQELLNFLR IHSIHLARKPNLGLKSCDGNQELLNFLRSD LKSCDGNQELLNFLRSDLIEVATRLQKGGL K S C L R S 0 1 2 1 1 1 1 1 0 0 3 0 0 1 0 1 0 0 0 0 0 0 13 0 1564.7304 Q9UIG0 Q9UIG0 1044 1056 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 3.6886E-07 129.16 3 2 31.917 43.269 0.78176 2 Median 31.917 43.269 0.78176 2 0 Median NaN NaN NaN 0 0 Median 132290000 2185900 130110000 106920000 2185900 104740000 25369000 0 25369000 10513 1786 10789 37651;37652;37653;37654;37655 56522;56523;56524;56525;56526 56524 5 SCDLLLFLR AFCALFDCDRPVAQKSCDLLLFLRDKIASY RPVAQKSCDLLLFLRDKIASYSSLREARGS K S C L R D 0 1 0 1 1 0 0 0 0 0 4 0 0 1 0 1 0 0 0 0 0 0 9 0 1135.606 Q6PJG6 Q6PJG6 719 727 BRAT1 BRCA1-associated ATM activator 1 yes yes 2 0.0050495 63.48 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10514 1596 10790 37656 56527 56527 1 SCENLAPFNTALK GCSVTVPANVQRWMRSCENLAPFNTALKLL MRSCENLAPFNTALKLLK____________ R S C L K L 2 0 2 0 1 0 1 0 0 0 2 1 0 1 1 1 1 0 0 0 0 0 13 0 1463.7079 B2R7M3;A0A024QZY1;Q13155;A8MU58;F8W950 B2R7M3 305 317 JTV1;AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 yes no 2 1.0797E-05 129.82 3 0.42013 0.53665 4.7348 2 Median 0.42013 0.53665 4.7348 2 0 Median NaN NaN NaN 0 0 Median 14731000 9559200 5172200 14731000 9559200 5172200 0 0 0 10515 23 10791 37657;37658;37659 56528;56529;56530;56531 56531 4 SCFESSPDPELK TSPQANEQSVTPQRRSCFESSPDPELKSRT QRRSCFESSPDPELKSRTPSRHSCSGSSPP R S C L K S 0 0 0 1 1 0 2 0 0 0 1 1 0 1 2 3 0 0 0 0 0 0 12 0 1394.6024 A0A140VK53;Q9UQ35;I3L182;Q9UQ39;I3L4D8 A0A140VK53 871 882 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 2 0.031191 51.927 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2547100 2547100 0 2547100 2547100 0 0 0 0 10516 509 10792 37660 56532 56532 1 SCGPASQSTLGLK SVASTPISQRRSQGRSCGPASQSTLGLKGS GRSCGPASQSTLGLKGSLKRSAISAAKTGV R S C L K G 1 0 0 0 1 1 0 2 0 0 2 1 0 0 1 3 1 0 0 0 0 0 13 0 1304.6395 Q9BXS6;A8K4B4;H0YMD2 Q9BXS6 255 267 NUSAP1 Nucleolar and spindle-associated protein 1 yes no 2 0.010967 40.533 1 0.78582 1.0011 NaN 1 Median 0.78582 1.0011 NaN 1 0 Median NaN NaN NaN 0 0 Median 15350000 8240000 7109600 15350000 8240000 7109600 0 0 0 10517 1723 10793 37661 56533 56533 1 SCGSSTPDEFPTDIPGTK YKLDDPSCPRPECYRSCGSSTPDEFPTDIP SSTPDEFPTDIPGTKGNFKLVRHVSFVDCP R S C T K G 0 0 0 2 1 0 1 2 0 1 0 1 0 1 3 3 3 0 0 0 0 0 18 0 1894.8255 P41091;H7BZU1 P41091 104 121 EIF2S3 Eukaryotic translation initiation factor 2 subunit 3 yes no 2 5.216E-10 113.37 4 0.5341 0.67635 8.2867 3 Median 0.5341 0.67635 8.2867 3 0 Median NaN NaN NaN 0 0 Median 19064000 11094000 7970100 19064000 11094000 7970100 0 0 0 10518 1333 10794 37662;37663;37664;37665 56534;56535;56536;56537;56538;56539;56540 56534 7 SCPVVQSSQHLFLDLPK INAVELKKPQCKVCRSCPVVQSSQHLFLDL PVVQSSQHLFLDLPKLEKRLEEWLGRTLPG R S C P K L 0 0 0 1 1 2 0 0 1 0 3 1 0 1 2 3 0 0 0 2 0 0 17 0 1953.9982 A8K492;P56192;B4DF61;B4E0E9 A8K492 440 456 MARS Methionine--tRNA ligase, cytoplasmic yes no 3 0.002349 61.52 1 0.42562 0.54161 NaN 1 Median 0.42562 0.54161 NaN 1 0 Median NaN NaN NaN 0 0 Median 16263000 13156000 3106900 16263000 13156000 3106900 0 0 0 10519 602 10795 37666 56541;56542;56543 56543 3 SCQFVAVR KGVPIRLEVGPRDMKSCQFVAVRRDTGEKL VGPRDMKSCQFVAVRRDTGEKLTVAENEAE K S C V R R 1 1 0 0 1 1 0 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 8 0 965.47529 P07814;B4DP50 P07814 1376 1383 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.0048857 79.597 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7450600 7450600 0 7450600 7450600 0 0 0 0 10520 1242 10796 37667 56544 56544 1 SCSGVEFSTSGHAYTDTGK KGYGFGMVKIDLKTKSCSGVEFSTSGHAYT VEFSTSGHAYTDTGKASGNLETKYKVCNYG K S C G K A 1 0 0 1 1 0 1 3 1 0 0 1 0 1 0 4 3 0 1 1 0 0 19 0 1989.8374 Q9Y277;E5RJN6;E5RHZ6;E5RHE1 Q9Y277 35 53 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 2;3 7.1834E-62 220.21 7 1 0.54939 0.69514 10.269 7 Median 0.54939 0.69514 10.269 7 0 Median NaN NaN NaN 0 0 Median 148230000 90978000 57247000 144580000 90978000 53599000 3648300 0 3648300 10521 1803 10797 37668;37669;37670;37671;37672;37673;37674;37675 56545;56546;56547;56548;56549;56550;56551;56552;56553;56554;56555;56556 56547 12 SCSGVEFSTSGSSNTDTGK KGFGFGLVKLDVKTKSCSGVEFSTSGSSNT VEFSTSGSSNTDTGKVTGTLETKYKWCEYG K S C G K V 0 0 1 1 1 0 1 3 0 0 0 1 0 1 0 6 3 0 0 1 0 0 19 0 1906.7851 A0A024QZT0;P45880;A0A0A0MR02;A0A024QZN9;Q5JSD2;Q5JSD1;A2A3S1 A0A024QZT0 46 64 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2 2.2491E-144 297.16 4 2 0.58082 0.73257 80.394 6 Median 0.57355 0.71858 3.1539 4 0 Median 2.1225 3.3898 4.967 2 0 Median 290380000 158250000 132130000 202400000 130440000 71956000 87982000 27804000 60178000 10522 20 10798 37676;37677;37678;37679;37680;37681 56557;56558;56559;56560;56561;56562;56563;56564;56565;56566;56567;56568 56560 12 SCSLVLEHQPDNIK AASQLKLDHYRAALRSCSLVLEHQPDNIKA RSCSLVLEHQPDNIKALFRKGKVLAQQGEY R S C I K A 0 0 1 1 1 1 1 0 1 1 2 1 0 0 1 2 0 0 0 1 0 0 14 0 1638.8036 B2R8G6;A0A024R7P2;B7Z6M0;Q14318;U3KQI1;U3KQ64;A0A0A0MTJ1 B2R8G6 238 251 FKBP8 Peptidyl-prolyl cis-trans isomerase FKBP8 yes no 3 0.011032 57.434 1 0.80952 1.0653 NaN 1 Median 0.80952 1.0653 NaN 1 0 Median NaN NaN NaN 0 0 Median 3030800 1459700 1571100 3030800 1459700 1571100 0 0 0 10523 182 10799 37682 56569;56570 56569 2 SCTVSINFGPCFK DIFEGVYFPAISLYKSCTVSINFGPCFKYP YKSCTVSINFGPCFKYPPKDLTYRPMSDMG K S C F K Y 0 0 1 0 2 0 0 1 0 1 0 1 0 2 1 2 1 0 0 1 0 0 13 0 1515.685 A8K6T5;Q9UBL3;F5H8F7;B4DPT1;H0YBF6;H0YAQ0;B4DEM3 A8K6T5 571 583 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 2 3.4229E-06 93.111 3 0.8317 1.0563 6.624 3 Median 0.8317 1.0563 6.624 3 0 Median NaN NaN NaN 0 0 Median 14026000 8486600 5538900 14026000 8486600 5538900 0 0 0 10524 627 10800 37683;37684;37685 56571;56572;56573;56574;56575;56576;56577 56574 7 SDADSGFLGLRPTSVDPALR ______________________________ GFLGLRPTSVDPALRRRRRGPRNKKRGWRR K S D L R R 2 2 0 3 0 0 0 2 0 0 3 0 0 1 2 3 1 0 0 1 0 0 20 1 2073.0491 Q7L4X7;Q96CS0;Q53YP0;B4E1N4;Q9NZM5;B4DVK1;B4DND9;B4E013 Q7L4X7 12 31 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes no 3 7.1716E-07 81.428 4 2 0.63499 0.90245 11.862 4 Median 0.67562 0.93613 14.114 3 0 Median 0.59477 0.86999 NaN 1 0 Median 59849000 37353000 22496000 34984000 17783000 17201000 24864000 19570000 5294600 10525 887 10801 37686;37687;37688;37689;37690;37691 56578;56579;56580;56581;56582;56583 56580 6 SDAEEDGGTVSQEEEDRKPK DEEEEGEEKLEEKQKSDAEEDGGTVSQEEE DGGTVSQEEEDRKPKAEEDEILNRSPRNRK K S D P K A 1 1 0 3 0 1 5 2 0 0 0 2 0 0 1 2 1 0 0 1 0 0 20 2 2204.9669 P27824 P27824 554 573 CANX Calnexin yes yes 3 0.00028292 79.393 3 2 0.3567 0.44925 110.66 5 Median 0.3372 0.39564 11.621 3 0 Median 1.8043 2.9885 1.2383 2 0 Median 25571000 15316000 10256000 17335000 12333000 5001300 8236700 2982400 5254300 10526 1303 10802 37692;37693;37694;37695;37696 56584;56585;56586;56587;56588 56584 5 SDAYYCTGDVTAWTK ALLPCEECSGQLVFKSDAYYCTGDVTAWTK SDAYYCTGDVTAWTKCMVKTQTPNRKEWVT K S D T K C 2 0 0 2 1 0 0 1 0 0 0 1 0 0 0 1 3 1 2 1 0 0 15 0 1736.7352 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 306 320 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 1.9103E-05 73.466 2 0.26289 0.39884 1.9342 2 Median NaN NaN NaN 0 0 Median 0.26289 0.39884 1.9342 2 0 Median 41047000 32764000 8282800 0 0 0 41047000 32764000 8282800 10527 107 10803 37697;37698 56589;56590;56591 56590 3 SDCGVDCCCDPTK KGWCGNKQCGCRKQKSDCGVDCCCDPTKCR QKSDCGVDCCCDPTKCRNRQQGKDSLGTVE K S D T K C 0 0 0 3 4 0 0 1 0 0 0 1 0 0 1 1 1 0 0 1 0 0 13 0 1572.5313 Q59HG1;O95239;B3KNC0 Q59HG1 1107 1119 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 2.664E-08 103.08 1 0.8786 1.1176 NaN 1 Median 0.8786 1.1176 NaN 1 0 Median NaN NaN NaN 0 0 Median 6932300 3716700 3215600 6932300 3716700 3215600 0 0 0 10528 1216 10804 37699 56592;56593 56592 2 SDDDGFEIVPIEDPAK SWEPLRGKKRSRGPKSDDDGFEIVPIEDPA DDDGFEIVPIEDPAKHRILDPEGLALGAVI K S D A K H 1 0 0 4 0 0 2 1 0 2 0 1 0 1 2 1 0 0 0 1 0 0 16 0 1745.7996 Q8IY81;B4DKU3 Q8IY81 644 659 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 2.043E-29 151.16 4 2 0.76281 0.95863 10.55 6 Median 0.79611 0.99035 5.9965 4 0 Median 0.54758 0.83983 6.7834 2 0 Median 212050000 118160000 93895000 163860000 89025000 74835000 48193000 29134000 19059000 10529 1628 10805 37700;37701;37702;37703;37704;37705 56594;56595;56596;56597;56598;56599;56600;56601 56597 7 SDDSFQSLHGSLPLDSFSK VSTCSVTSPDDMSTKSDDSFQSLHGSLPLD FQSLHGSLPLDSFSKFVAGERDCPRLLLSA K S D S K F 0 0 0 3 0 1 0 1 1 0 3 1 0 2 1 6 0 0 0 0 0 0 19 0 2065.9593 Q7Z5J4;A8MXE8 Q7Z5J4 568 586 RAI1 Retinoic acid-induced protein 1 yes no 3 0.0061139 48.376 1 1.2431 1.5956 NaN 1 Median 1.2431 1.5956 NaN 1 0 Median NaN NaN NaN 0 0 Median 1787900 843400 944490 1787900 843400 944490 0 0 0 10530 1617 10806 37706 56602;56603 56602 2 SDEAVKPFGLK LSLMRLDRFRDSILRSDEAVKPFGLKVSQL SILRSDEAVKPFGLKVSQLLLSTDESTFDD R S D L K V 1 0 0 1 0 0 1 1 0 0 1 2 0 1 1 1 0 0 0 1 0 0 11 1 1189.6343 A0A0U1RQF0;P49327 A0A0U1RQF0 523 533 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0044321 112.11 1 0.62807 0.77571 NaN 1 Median 0.62807 0.77571 NaN 1 0 Median NaN NaN NaN 0 0 Median 7494300 4478900 3015400 7494300 4478900 3015400 0 0 0 10531 486 10807 37707 56604 56604 1 SDFEFTLK IPRVIQLLFKEIDKKSDFEFTLKVSYLEIY FKEIDKKSDFEFTLKVSYLEIYNEEILDLL K S D L K V 0 0 0 1 0 0 1 0 0 0 1 1 0 2 0 1 1 0 0 0 0 0 8 0 985.47566 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 133 140 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.0013126 120.62 3 2 0.75956 1.1088 9.5109 5 Median 0.86922 1.0663 11.309 3 0 Median 0.74059 1.1271 2.3226 2 0 Median 89763000 48211000 41551000 46515000 24209000 22306000 43248000 24003000 19245000 10532 1216 10808 37708;37709;37710;37711;37712 56605;56606;56607;56608;56609;56610;56611 56605 7 SDFFELLSNHHLDSQSR KKEKEDSKTRGEKIKSDFFELLSNHHLDSQ FFELLSNHHLDSQSRWSKVKDKVESDPRYK K S D S R W 0 1 1 2 0 1 1 0 2 0 3 0 0 2 0 4 0 0 0 0 0 0 17 0 2030.9446 G3V220;O14776 G3V220 797 813 TCERG1 Transcription elongation regulator 1 yes no 3 0.0060935 28.212 1 0.40726 0.57553 NaN 1 Median 0.40726 0.57553 NaN 1 0 Median NaN NaN NaN 0 0 Median 5820800 4130700 1690100 5820800 4130700 1690100 0 0 0 10533 1079 10809 37713 56612;56613 56612 2 SDGDPIVDPEK EEKGKEGDSEKESEKSDGDPIVDPEKEKEP ESEKSDGDPIVDPEKEKEPKEGQEEVLKEV K S D E K E 0 0 0 3 0 0 1 1 0 1 0 1 0 0 2 1 0 0 0 1 0 0 11 0 1170.5404 Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;B4DF22 Q59G16 848 858 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 2 0.014249 46.406 2 0.88772 1.1428 NaN 1 Median 0.88772 1.1428 NaN 1 0 Median NaN NaN NaN 0 0 Median 11628000 9107800 2519700 11628000 9107800 2519700 0 0 0 10534 257 10810 37714;37715 56614;56615;56616 56616 3 SDGGYTYDTSDLAAIK IVFVPGCSIPLTIVKSDGGYTYDTSDLAAI DGGYTYDTSDLAAIKQRLFEEKADMIIYVV K S D I K Q 2 0 0 3 0 0 0 2 0 1 1 1 0 0 0 2 2 0 2 0 0 0 16 0 1675.7577 P54136;B4DXW6 P54136 378 393 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 6.6885E-25 171.32 5 0.53237 0.66836 23.169 4 Median 0.53237 0.66836 23.169 4 0 Median NaN NaN NaN 0 0 Median 24545000 17120000 7424800 24545000 17120000 7424800 0 0 0 10535 1373 10811 37716;37717;37718;37719;37720 56617;56618;56619;56620;56621;56622;56623;56624;56625 56621 9 SDGIYIINLK TNLDFQMEQYIYKRKSDGIYIINLKRTWEK IYKRKSDGIYIINLKRTWEKLLLAARAIVA K S D L K R 0 0 1 1 0 0 0 1 0 3 1 1 0 0 0 1 0 0 1 0 0 0 10 0 1134.6285 C9J9K3;A0A024R2P0;A0A0C4DG17;P08865;A0A024R7P5;Q96RS2;F8WD59 C9J9K3 43 52 RPSA;LOC388524 40S ribosomal protein SA yes no 2 0.00075405 127.46 4 2 0.8278 1.0741 10.996 3 Median 0.8278 1.0741 10.996 3 0 Median NaN NaN NaN 0 0 Median 249540000 113990000 135550000 223650000 113990000 109660000 25890000 0 25890000 10536 90 10812 37721;37722;37723;37724;37725;37726 56626;56627;56628;56629;56630;56631;56632;56633;56634 56630 9 SDGPYALVLVPTR PVVQSLQAMESKIQRSDGPYALVLVPTREL QRSDGPYALVLVPTRELALQSFDTVQKLLK R S D T R E 1 1 0 1 0 0 0 1 0 0 2 0 0 0 2 1 1 0 1 2 0 0 13 0 1386.7507 B4DYZ1;F8WAJ0;Q9H8H2 B4DYZ1 174 186 DDX31 Probable ATP-dependent RNA helicase DDX31 yes no 2 0.0031136 50.284 2 1 0.71103 0.9433 23.978 3 Median 0.67042 0.9036 6.0808 2 0 Median 1.0677 1.3596 NaN 1 0 Median 11556000 6324400 5231400 6756000 3863500 2892500 4799800 2460900 2338900 10537 875 10813 37727;37728;37729 56635;56636;56637 56635 3 SDHPGISITDLSK SAYMLWLNASREKIKSDHPGISITDLSKKA IKSDHPGISITDLSKKAGEIWKGMSKEKKE K S D S K K 0 0 0 2 0 0 0 1 1 2 1 1 0 0 1 3 1 0 0 0 0 0 13 0 1368.6885 A0A024R4Z6;Q08945;A0A0U1RRK2 A0A024R4Z6 567 579 SSRP1 FACT complex subunit SSRP1 yes no 2 0.00021859 78.342 2 0.77348 1.2227 1.6882 2 Median NaN NaN NaN 0 0 Median 0.77348 1.2227 1.6882 2 0 Median 281350000 163890000 117450000 0 0 0 281350000 163890000 117450000 10538 132 10814 37730;37731 56638;56639;56640;56641 56639 4 SDIASHFSNK RREIEKLAASLWLWKSDIASHFSNKRKKCV LWLWKSDIASHFSNKRKKCVRDCEKYKPGV K S D N K R 1 0 1 1 0 0 0 0 1 1 0 1 0 1 0 3 0 0 0 0 0 0 10 0 1104.52 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 798 807 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 1.2003E-06 142.36 1 1 0.78117 1.006 NaN 1 Median 0.78117 1.006 NaN 1 0 Median NaN NaN NaN 0 0 Median 12721000 5650800 7070500 10353000 5650800 4701800 2368700 0 2368700 10539 729 10815 37732;37733 56642;56643;56644 56642 3 SDIGEVILVGGMTR IAPCQKAMQDAEVSKSDIGEVILVGGMTRM KSDIGEVILVGGMTRMPKVQQTVQDLFGRA K S D T R M 0 1 0 1 0 0 1 3 0 2 1 0 1 0 0 1 1 0 0 2 0 0 14 0 1445.7548 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;B7Z4T3;A1XP52;H0YBG6 B7Z4V2 364 377 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 0.0075371 47.288 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2860700 2860700 0 2860700 2860700 0 0 0 0 10540 910 10816 37734 56645 56645 1 SDILKDPPSEANSIQSANATTK PSVTKKNTNKKTKPKSDILKDPPSEANSIQ PSEANSIQSANATTKTSETNHTSRPRLKNV K S D T K T 3 0 2 2 0 1 1 0 0 2 1 2 0 0 2 4 2 0 0 0 0 0 22 1 2286.1339 Q8N488 Q8N488 115 136 RYBP RING1 and YY1-binding protein yes yes 3 0.00069334 22.763 1 0.8999 1.1147 NaN 1 Median 0.8999 1.1147 NaN 1 0 Median NaN NaN NaN 0 0 Median 4482500 2389800 2092700 4482500 2389800 2092700 0 0 0 10541 1637 10817 37735 56646 56646 1 SDKPIFTLNAHNDEISGLDLSSQIK LASTDDGFVYNLDARSDKPIFTLNAHNDEI HNDEISGLDLSSQIKGCLVTASADKYVKIW R S D I K G 1 0 2 3 0 1 1 1 1 3 3 2 0 1 1 4 1 0 0 0 0 0 25 1 2741.3872 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DNL1;B4DJV5 Q9BV37 374 398 PWP1 Periodic tryptophan protein 1 homolog yes no 3;4 1.6068E-16 121.5 6 1 0.70136 0.85939 18.56 7 Median 0.74032 0.90652 19.352 6 0 Median 0.4732 0.74879 NaN 1 0 Median 207160000 121590000 85573000 189450000 108310000 81149000 17705000 13281000 4423900 10542 273 10818 37736;37737;37738;37739;37740;37741;37742 56647;56648;56649;56650;56651;56652;56653;56654;56655 56649 9 SDKPLLVK AVGTTTGQVLLYDLRSDKPLLVKDHQYGLP VLLYDLRSDKPLLVKDHQYGLPIKSVHFQD R S D V K D 0 0 0 1 0 0 0 0 0 0 2 2 0 0 1 1 0 0 0 1 0 0 8 1 898.54877 Q9BSC4;B4DS83;H7C1Z3 Q9BSC4 260 267 NOL10 Nucleolar protein 10 yes no 2 0.0056135 114.5 1 0.80978 1.001 NaN 1 Median 0.80978 1.001 NaN 1 0 Median NaN NaN NaN 0 0 Median 32441000 18872000 13570000 32441000 18872000 13570000 0 0 0 10543 1710 10819 37743 56656 56656 1 SDKTEEIAEEEETVFPK LRKQTEEKEKKEKPKSDKTEEIAEEEETVF KTEEIAEEEETVFPKAKQVKKKAEPSEVDM K S D P K A 1 0 0 1 0 0 6 0 0 1 0 2 0 1 1 1 2 0 0 1 0 0 17 1 1979.9211 Q9NR30;Q3SWU7 Q9NR30 38 54 DDX21 Nucleolar RNA helicase 2 yes no 2;3 6.5734E-50 219.84 8 4 0.66434 0.82525 13.789 11 Median 0.78909 0.96739 11.785 7 0 Plateau 0.44499 0.71558 3.2678 4 0 Median 381020000 238990000 142030000 211480000 121030000 90453000 169540000 117960000 51575000 10544 1756 10820 37744;37745;37746;37747;37748;37749;37750;37751;37752;37753;37754;37755 56657;56658;56659;56660;56661;56662;56663;56664;56665;56666;56667;56668;56669;56670;56671;56672;56673;56674;56675;56676;56677;56678;56679 56664 23 SDLEMQYETLQEELMALK INGLRQVLDNLTMEKSDLEMQYETLQEELM EMQYETLQEELMALKKNHKEEMSQLTGQNS K S D L K K 1 0 0 1 0 2 4 0 0 0 4 1 2 0 0 1 1 0 1 0 0 0 18 0 2170.0174 CON__P35527;P35527;K7EQQ3 CON__P35527 272 289 KRT9 Keratin, type I cytoskeletal 9 yes no 2 2.1334E-35 184.11 7 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60510000 60510000 0 26847000 26847000 0 33663000 33663000 0 + 10545 963 10821;10822;10823 37756;37757;37758;37759;37760;37761;37762;37763;37764 56680;56681;56682;56683;56684;56685;56686;56687;56688;56689 56680 342;343 10 SDLEMQYETLQEELMALKK INGLRQVLDNLTMEKSDLEMQYETLQEELM MQYETLQEELMALKKNHKEEMSQLTGQNSG K S D K K N 1 0 0 1 0 2 4 0 0 0 4 2 2 0 0 1 1 0 1 0 0 0 19 1 2298.1123 CON__P35527;P35527;K7EQQ3 CON__P35527 272 290 KRT9 Keratin, type I cytoskeletal 9 yes no 3 6.7365E-10 116.61 5 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29781000 29781000 0 29781000 29781000 0 0 0 0 + 10546 963 10824;10825 37765;37766;37767;37768;37769 56690;56691;56692;56693;56694;56695 56692 342;343 6 SDLIEVATR LKSCDGNQELLNFLRSDLIEVATRLQKGGL LLNFLRSDLIEVATRLQKGGLGYVEETSEF R S D T R L 1 1 0 1 0 0 1 0 0 1 1 0 0 0 0 1 1 0 0 1 0 0 9 0 1002.5346 Q9UIG0 Q9UIG0 1057 1065 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.010406 68.371 2 24.714 32.809 NaN 1 Median 24.714 32.809 NaN 1 0 Median NaN NaN NaN 0 0 Median 36880000 517010 36363000 36880000 517010 36363000 0 0 0 10547 1786 10826 37770;37771 56696;56697 56697 2 SDLSVIQR NPIKAEDVGYRSSSRSDLSVIQRNPKRITT GYRSSSRSDLSVIQRNPKRITTRHKKQLKK R S D Q R N 0 1 0 1 0 1 0 0 0 1 1 0 0 0 0 2 0 0 0 1 0 0 8 0 916.49779 Q9BVJ6;B4E343 Q9BVJ6 745 752 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 0.0055162 104.75 4 1 0.97682 1.313 9.2483 5 Median 0.98397 1.3173 8.7633 4 0 Median 0.79135 1.1977 NaN 1 0 Median 104130000 52812000 51315000 86120000 42720000 43401000 18006000 10092000 7914100 10548 1719 10827 37772;37773;37774;37775;37776 56698;56699;56700;56701;56702;56703;56704 56703 7 SDLTVDAVK RQAARSRFFSRPSGRSDLTVDAVKLHNELQ SRPSGRSDLTVDAVKLHNELQSGSLRLGKS R S D V K L 1 0 0 2 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 2 0 0 9 0 946.49713 B3KMR5;Q5JTH9;A0A087X1U8;H7C1M8 B3KMR5 49 57 RRP12 RRP12-like protein yes no 2 0.019493 56.258 1 1 0.85223 1.2943 NaN 1 Median NaN NaN NaN 0 0 Median 0.85223 1.2943 NaN 1 0 Median 19221000 14378000 4842700 8816700 8816700 0 10404000 5561800 4842700 10549 756 10828 37777;37778 56705;56706 56705 2 SDLVLLYELK PTPTEELVHMFNELRSDLVLLYELKQACAN FNELRSDLVLLYELKQACANCEYELQMLRH R S D L K Q 0 0 0 1 0 0 1 0 0 0 4 1 0 0 0 1 0 0 1 1 0 0 10 0 1191.6751 B4DQG8;Q9NPF5 B4DQG8 359 368 DMAP1 DNA methyltransferase 1-associated protein 1 yes no 2 0.011769 81.525 3 0.50689 0.64195 5.504 3 Median 0.50689 0.64195 5.504 3 0 Median NaN NaN NaN 0 0 Median 20859000 14166000 6692400 20859000 14166000 6692400 0 0 0 10550 850 10829 37779;37780;37781 56707;56708;56709;56710;56711 56711 5 SDPGLLTNTMDVFVK GLMYSIMVHALRAFRSDPGLLTNTMDVFVK SDPGLLTNTMDVFVKEPSFDWKNFEQKMLK R S D V K E 0 0 1 2 0 0 0 1 0 0 2 1 1 1 1 1 2 0 0 2 0 0 15 0 1635.8178 P78527;H0YG84 P78527 3993 4007 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.00014762 99.732 3 1 0.82004 1.0322 36.564 3 Median 0.6474 0.79689 36.587 2 0 Median 0.82004 1.2467 NaN 1 0 Median 17501000 10292000 7208500 6208500 4035000 2173500 11292000 6257500 5035000 10551 1427 10830;10831 37782;37783;37784;37785 56712;56713;56714;56715 56715 635 3 SDPLFSAQR KQQDGGTTGTTKKARSDPLFSAQRLPPHGY TTKKARSDPLFSAQRLPPHGYPLEHPFNKD R S D Q R L 1 1 0 1 0 1 0 0 0 0 1 0 0 1 1 2 0 0 0 0 0 0 9 0 1019.5036 A8K6T5;Q9UBL3;F5H8F7;B4DPT1 A8K6T5 316 324 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 2 0.030821 44.719 1 0.62715 0.84047 NaN 1 Median NaN NaN NaN 0 0 Median 0.62715 0.84047 NaN 1 0 Median 5202100 3053700 2148400 0 0 0 5202100 3053700 2148400 10552 627 10832 37786 56716 56716 1 SDPLGSTQDHALSQESSEPGCR DLKCGGVEQASSSPRSDPLGSTQDHALSQE QDHALSQESSEPGCRVRSIKLKEDILSCTF R S D C R V 1 1 0 2 1 2 2 2 1 0 2 0 0 0 2 5 1 0 0 0 0 0 22 0 2357.019 Q5VZL5;H7C1I7 Q5VZL5 1244 1265 ZMYM4 Zinc finger MYM-type protein 4 yes no 3 1.6067E-13 120.15 4 2 0.81674 1.1127 30.902 4 Median 0.6265 0.85952 10.186 2 0 Median 1.0195 1.4395 10.099 2 0 Median 29856000 19213000 10642000 17594000 13103000 4491200 12262000 6110300 6151200 10553 1580 10833 37787;37788;37789;37790;37791;37792 56717;56718;56719;56720;56721;56722;56723;56724;56725;56726 56719 10 SDPLLIGIPTSENPFK KASADLMSYCEEHARSDPLLIGIPTSENPF DPLLIGIPTSENPFKDKKTCIIL_______ R S D F K D 0 0 1 1 0 0 1 1 0 2 2 1 0 1 3 2 1 0 0 0 0 0 16 0 1726.9142 Q53GD1;Q9UBI6 Q53GD1 49 64 GNG12 Guanine nucleotide-binding protein subunit gamma;Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12 yes no 2 0.00043497 93.011 3 0.79257 0.99193 14.462 3 Median 0.79257 0.99193 14.462 3 0 Median NaN NaN NaN 0 0 Median 12600000 6905500 5694800 12600000 6905500 5694800 0 0 0 10554 1541 10834 37793;37794;37795 56727;56728;56729 56729 3 SDPNRETDDTLVLSFVGQTR ASIDLPGIKGLWPLRSDPNRETDDTLVLSF ETDDTLVLSFVGQTRVLMLNGEEVEETELM R S D T R V 0 2 1 3 0 1 1 1 0 0 2 0 0 1 1 2 3 0 0 2 0 0 20 1 2249.0924 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5;B7Z859 Q16531 415 434 DDB1 DNA damage-binding protein 1 yes no 3 1.6524E-24 138.46 4 2 0.79818 1.1441 5.9111 6 Median 0.82236 1.1284 2.8411 4 0 Median 0.77676 1.2457 0.084655 2 0 Median 431410000 239030000 192380000 260480000 147740000 112750000 170930000 91288000 79638000 10555 1520 10835 37796;37797;37798;37799;37800;37801 56730;56731;56732;56733;56734;56735;56736;56737;56738;56739;56740 56737 11 SDQEAKPSTEDLGDKK ______________________________ DQEAKPSTEDLGDKKEGEYIKLKVIGQDSS M S D K K E 1 0 0 3 0 1 2 1 0 0 1 3 0 0 1 2 1 0 0 0 0 0 16 2 1746.8272 B8ZZJ0;B9A032;A0A024R3Z2;B8ZZN6;P63165 B8ZZJ0 2 17 SUMO1 Small ubiquitin-related modifier 1 yes no 3 5.5785E-11 133.87 2 0.89636 1.0365 22.705 2 Median 0.89636 1.0365 22.705 2 0 Median NaN NaN NaN 0 0 Median 8233100 2959400 5273700 8233100 2959400 5273700 0 0 0 10556 111 10836 37802;37803 56741;56742 56742 2 SDQSRLDSELK ESFINNLRRRVDQLKSDQSRLDSELKNMQD DQLKSDQSRLDSELKNMQDMVEDYRNKYED K S D L K N 0 1 0 2 0 1 1 0 0 0 2 1 0 0 0 3 0 0 0 0 0 0 11 1 1276.6259 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 247 257 KRT1 Keratin, type II cytoskeletal 1 no no 2 1.6432E-09 160.91 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 178590000 178590000 0 137770000 137770000 0 40826000 40826000 0 + 10557 1113;1114 10837 37804;37805;37806;37807;37808 56743;56744;56745;56746;56747 56743 5 SDQSYVISFVVPNQK LKNCPLIDNICAFAKSDQSYVISFVVPNQK SDQSYVISFVVPNQKRLTLLAQQKGVEGTW K S D Q K R 0 0 1 1 0 2 0 0 0 1 0 1 0 1 1 3 0 0 1 3 0 0 15 0 1709.8625 B4DH39;Q8TAF6;O60488 B4DH39 546 560 FACL4;ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 2 8.1644E-06 112.64 3 0.60815 0.76941 13.698 2 Median 0.60815 0.76941 13.698 2 0 Median NaN NaN NaN 0 0 Median 14417000 8694800 5722400 14417000 8694800 5722400 0 0 0 10558 806 10838 37809;37810;37811 56748;56749;56750;56751 56749 4 SDQVNGVLVLSLLDK AAEEPSGAGSEELIKSDQVNGVLVLSLLDK SDQVNGVLVLSLLDKIIGAVDQIQLTQAQL K S D D K I 0 0 1 2 0 1 0 1 0 0 4 1 0 0 0 2 0 0 0 3 0 0 15 0 1598.8879 B4DPZ5;B4DNU9;Q6NZI2 B4DPZ5 46 60 PTRF Polymerase I and transcript release factor yes no 2 2.4508E-15 139.19 3 0.83527 1.0414 6.6942 3 Median 0.83527 1.0414 6.6942 3 0 Median NaN NaN NaN 0 0 Median 47540000 25993000 21547000 47540000 25993000 21547000 0 0 0 10559 842 10839 37812;37813;37814 56752;56753;56754;56755;56756 56754 5 SDRPAYVTILSLVR KETSLNKAREHSLLRSDRPAYVTILSLVRD RSDRPAYVTILSLVRDAAARLPNGEGTRAE R S D V R D 1 2 0 1 0 0 0 0 0 1 2 0 0 0 1 2 1 0 1 2 0 0 14 1 1588.8937 A0A024R3K9;A0A024R3N2;Q6P4R8;E9PQ59;B4DSL1 A0A024R3K9 571 584 NFRKB Nuclear factor related to kappa-B-binding protein yes no 3 0.00061814 50.155 2 1 0.81482 1.0728 23.258 3 Median 0.76709 1.0002 9.9104 2 0 Median 0.9706 1.4686 NaN 1 0 Median 25768000 13712000 12055000 11264000 6445100 4818600 14504000 7267400 7236900 10560 101 10840 37815;37816;37817 56757;56758;56759;56760 56757 4 SDSEDICLFTK SKELRVRLTLPHSIRSDSEDICLFTKDEPN HSIRSDSEDICLFTKDEPNSTPEKTEQFYR R S D T K D 0 0 0 2 1 0 1 0 0 1 1 1 0 1 0 2 1 0 0 0 0 0 11 0 1313.5809 O76021;Q32Q62;J3QSV6;A0PJ61;A0PJ87;I3L3U9;I3L3C4;I3L234 O76021 90 100 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 1.7846E-28 179.09 4 2 0.6503 0.85743 29.878 6 Median 0.6698 0.87699 3.3419 4 0 Median 0.31349 0.49583 3.7658 2 0 Median 914050000 584640000 329420000 675020000 403740000 271290000 239030000 180900000 58129000 10561 1210 10841 37818;37819;37820;37821;37822;37823 56761;56762;56763;56764;56765;56766;56767;56768;56769;56770 56766 10 SDSEDICLFTKDEPNSTPEK SKELRVRLTLPHSIRSDSEDICLFTKDEPN ICLFTKDEPNSTPEKTEQFYRKLLNKHGIK R S D E K T 0 0 1 3 1 0 3 0 0 1 1 2 0 1 2 3 2 0 0 0 0 0 20 1 2311.0162 O76021;Q32Q62;J3QSV6;A0PJ61;A0PJ87;I3L3U9;I3L3C4;I3L234 O76021 90 109 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 3 1.0755E-19 144.25 3 0.64806 0.80706 3.8339 3 Plateau 0.64806 0.80706 3.8339 3 0 Plateau NaN NaN NaN 0 0 Median 40513000 24103000 16410000 40513000 24103000 16410000 0 0 0 10562 1210 10842 37824;37825;37826 56771;56772;56773;56774 56771 4 SDSFENPVLQQHFR GKMKAIVEKLRFTYRSDSFENPVLQQHFRN RSDSFENPVLQQHFRNLEALALDLMEPEQA R S D F R N 0 1 1 1 0 2 1 0 1 0 1 0 0 2 1 2 0 0 0 1 0 0 14 0 1702.8063 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356;Q6IC76 A0A024R1N4 475 488 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 2;3 1.1132E-28 182.64 6 2 0.52758 0.79635 19.296 7 Median 0.52539 0.72 22.858 5 0 Median 0.53833 0.87934 4.6444 2 0 Median 642520000 421930000 220590000 459260000 301180000 158080000 183260000 120750000 62506000 10563 62 10843 37827;37828;37829;37830;37831;37832;37833;37834 56775;56776;56777;56778;56779;56780;56781;56782;56783;56784;56785 56783 11 SDSGQQQPSSVGNQSHSASDPGPIR TLYLTLKIEQRERYKSDSGQQQPSSVGNQS VGNQSHSASDPGPIRATAPMWRCSRIMHMQ K S D I R A 1 1 1 2 0 4 0 3 1 1 0 0 0 0 3 7 0 0 0 1 0 0 25 0 2522.1382 Q59FH1;H0Y4W2;F2Z2U4 Q59FH1 2996 3020 TRRAP yes no 3 0.041698 11.523 1 1.2613 1.6612 NaN 1 Median NaN NaN NaN 0 0 Median 1.2613 1.6612 NaN 1 0 Median 3044800 1423600 1621200 0 0 0 3044800 1423600 1621200 10564 1050 10844 37835 56786;56787 56786 2 SDSGTAAQTSLDIDK EDTVLTRRQKEAKTKSDSGTAAQTSLDIDK SDSGTAAQTSLDIDKNEKCYLCKSLVPFRE K S D D K N 2 0 0 3 0 1 0 1 0 1 1 1 0 0 0 3 2 0 0 0 0 0 15 0 1507.7002 A0A024R7R0;Q96RL1;Q9NTC5;A0A024R7S2 A0A024R7R0 545 559 RAP80;UIMC1;DKFZp434I1926 BRCA1-A complex subunit RAP80 yes no 2 1.6391E-08 126.34 2 1 0.81346 1.1282 NaN 1 Median NaN NaN NaN 0 0 Median 0.81346 1.1282 NaN 1 0 Median 5662900 2678600 2984200 909020 0 909020 4753800 2678600 2075200 10565 183 10845 37836;37837;37838 56788;56789;56790 56788 3 SDSVVLVSQSR YIIGRKRKTLQLSHKSDSVVLVSQSRQRTC LSHKSDSVVLVSQSRQRTCRRKYPNYGRRN K S D S R Q 0 1 0 1 0 1 0 0 0 0 1 0 0 0 0 4 0 0 0 3 0 0 11 0 1175.6146 Q9NSI6;H7BZR9 Q9NSI6 784 794 BRWD1 Bromodomain and WD repeat-containing protein 1 yes no 2 0.038111 44.024 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2652000 2652000 0 0 0 0 2652000 2652000 0 10566 1758 10846 37839 56791 56791 1 SDTIDTVSVPYVFR SAMRNRKYNCTLCSRSDTIDTVSVPYVFRY RSDTIDTVSVPYVFRYFVAELAAMNIKVKL R S D F R Y 0 1 0 2 0 0 0 0 0 1 0 0 0 1 1 2 2 0 1 3 0 0 14 0 1597.7988 Q6DKI9;Q9BSR4;Q4QRK8;B7Z1W6;Q9H9Y6 Q6DKI9 529 542 POLR1B DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA2 yes no 2 0.0057901 96.229 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10567 904 10847 37840 56792 56792 1 SDTLPLATR PVGNRVTVFDLKNNKSDTLPLATRYNVKCV DLKNNKSDTLPLATRYNVKCVGLSPDGRLA K S D T R Y 1 1 0 1 0 0 0 0 0 0 2 0 0 0 1 1 2 0 0 0 0 0 9 0 972.52401 Q15269;A0A0B4J2E5;C9J544 Q15269 47 55 PWP2 Periodic tryptophan protein 2 homolog yes no 2 0.0013904 106.68 4 2 0.78785 1.0918 3.5479 6 Median 0.81072 1.093 4.5619 4 0 Median 0.69588 1.0918 0.47589 2 0 Median 197990000 110710000 87278000 137580000 75433000 62146000 60411000 35279000 25131000 10568 1508 10848 37841;37842;37843;37844;37845;37846 56793;56794;56795;56796;56797;56798;56799;56800;56801 56796 9 SDTYYQSPTGDR KRREVFRKSGATCGRSDTYYQSPTGDRIRS CGRSDTYYQSPTGDRIRSKVELTRYLGPAC R S D D R I 0 1 0 2 0 1 0 1 0 0 0 0 0 0 1 2 2 0 2 0 0 0 12 0 1388.5844 B4DUR3;A0A0A0MS90;A8K654;B4DI41;Q9UIS9 B4DUR3 31 42 MBD1 Methyl-CpG-binding domain protein 1 yes no 2 0.0024037 85.355 1 3 0.8353 1.0909 NaN 1 Median NaN NaN NaN 0 0 Median 0.8353 1.0909 NaN 1 0 Median 7819700 3952300 3867300 0 0 0 7819700 3952300 3867300 10569 395 10849 37847;37848;37849;37850 56802;56803;56804;56805 56804 4 SDVDLYQVR IGMNEPLVDCEGYPRSDVDLYQVRTARHNI CEGYPRSDVDLYQVRTARHNIICLQNDHKA R S D V R T 0 1 0 2 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 2 0 0 9 0 1093.5404 J3KN29;O00233;F5H7X1;F5H169;F5H5V4;F5GX23 J3KN29 65 73 PSMD9 26S proteasome non-ATPase regulatory subunit 9 yes no 2 0.018318 86.833 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 977790 977790 0 977790 977790 0 0 0 0 10570 1131 10850 37851 56806 56806 1 SDVEAIFSK SRVFIGNLNTLVVKKSDVEAIFSKYGKIVG TLVVKKSDVEAIFSKYGKIVGCSVHKGFAF K S D S K Y 1 0 0 1 0 0 1 0 0 1 0 1 0 1 0 2 0 0 0 1 0 0 9 0 994.49713 B2R5W2;G3V4C1;G3V4W0;B4DY08;B3KX96;B2R603;G3V2Q1;P07910;G3V576;A8K9A4;D3DPI2;G3V5X6;G3V3K6;G3V251;G3V555;G3V575;Q6PKD2;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8;B4DMJ1;B4DSU6;G3V4M8;Q569J8;G3V2H6 B2R5W2 31 39 HNRNPC;hCG_1641229;HNRPCL1;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2;HNRPC Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 yes no 1;2 0.00024714 128.36 4 2 0.62627 0.7874 25.24 6 Median 0.58582 0.74977 7.0411 4 0 Median 0.79076 1.1973 0.87834 2 0 Median 108380000 63972000 44409000 78077000 47627000 30450000 30305000 16345000 13959000 10571 694 10851 37852;37853;37854;37855;37856;37857 56807;56808;56809;56810;56811;56812;56813;56814;56815 56810 9 SEAAAPHTDAGGGLSSDEEEGTSSQAEAAR GLLIRERLKRRYGPKSEAAAPHTDAGGGLS SDEEEGTSSQAEAARILAASWPQNREDEEK K S E A R I 7 1 0 2 0 1 5 4 1 0 1 0 0 0 1 5 2 0 0 0 0 0 30 0 2887.234 A0A024R2M8;X5DRB1;A8K146;Q01831;D9I4E1 A0A024R2M8 869 898 XPC DNA repair protein complementing XP-C cells yes no 3 0.010091 19.507 1 1 0.76495 1.02 66.494 2 Median 1.2093 1.6324 NaN 1 0 Median 0.48387 0.63741 NaN 1 0 Median 8311300 4786800 3524500 3921200 2053400 1867800 4390100 2733400 1656700 10572 89 10852 37858;37859 56816;56817 56816 2 SEAANGNLDFVLSFLK GCLSDSDMFSQAGLRSEAANGNLDFVLSFL EAANGNLDFVLSFLKSNTLPISLQSIRSSL R S E L K S 2 0 2 1 0 0 1 1 0 0 3 1 0 2 0 2 0 0 0 1 0 0 16 0 1723.8781 E5KNY5;P42704;B4DSR0 E5KNY5 514 529 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.0024562 69.602 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10573 1001 10853 37860 56818 56818 1 SEAHTADGISIR KKAAVWEITGAEFSKSEAHTADGISIRFPR FSKSEAHTADGISIRFPRCTRIRDDKDWKS K S E I R F 2 1 0 1 0 0 1 1 1 2 0 0 0 0 0 2 1 0 0 0 0 0 12 0 1255.6157 P49916;B7Z6I3 P49916 792 803 LIG3 DNA ligase 3;DNA ligase yes no 2 0.015821 47.334 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4249800 4249800 0 4249800 4249800 0 0 0 0 10574 1356 10854 37861 56819 56819 1 SEAPETPMEEEAELVLTEK KLHNELQSGSLRLGKSEAPETPMEEEAELV ETPMEEEAELVLTEKSSGTFLSGLSDCTNV K S E E K S 2 0 0 0 0 0 7 0 0 0 2 1 1 0 2 1 2 0 0 1 0 0 19 0 2130.9878 B3KMR5;Q5JTH9;A0A087X1U8 B3KMR5 72 90 RRP12 RRP12-like protein yes no 2 0.00013946 48.527 1 0.85824 1.2937 NaN 1 Median NaN NaN NaN 0 0 Median 0.85824 1.2937 NaN 1 0 Median 16678000 8286600 8391100 0 0 0 16678000 8286600 8391100 10575 756 10855 37862 56820 56820 264 1 SEATDGGFTSQIR TPKKSKKKSNKRSEKSEATDGGFTSQIRKA EKSEATDGGFTSQIRKASNTSKNISKAKQL K S E I R K 1 1 0 1 0 1 1 2 0 1 0 0 0 1 0 2 2 0 0 0 0 0 13 0 1367.6317 Q96QE3;H0UIC2;A0A075B754 Q96QE3 679 691 ATAD5 ATPase family AAA domain-containing protein 5 yes no 2 3.6747E-14 104.79 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10576 1698 10856 37863;37864;37865 56821;56822;56823 56821 3 SEATFQFTVER HNTAEEDMEDDTSWRSEATFQFTVERFSRL TSWRSEATFQFTVERFSRLSESVLSPPCFV R S E E R F 1 1 0 0 0 1 2 0 0 0 0 0 0 2 0 1 2 0 0 1 0 0 11 0 1313.6252 Q6U8A4;Q93009;B7ZAX6;F5H2X1;B7Z842;H3BUV0;H3BTM1;H3BRA2;H3BQD1;H3BMF6 Q6U8A4 77 87 USP7 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 7 yes no 2 0.00033091 123.75 2 0.47288 0.65908 NaN 1 Median 0.47288 0.65908 NaN 1 0 Median NaN NaN NaN 0 0 Median 4217300 2864400 1353000 4217300 2864400 1353000 0 0 0 10577 1600 10857 37866;37867 56824;56825 56824 2 SEAVVEYVFSGSR QKAKQFLPFLQRAGRSEAVVEYVFSGSRLK GRSEAVVEYVFSGSRLKLYLPKETCLITFL R S E S R L 1 1 0 0 0 0 2 1 0 0 0 0 0 1 0 3 0 0 1 3 0 0 13 0 1428.6885 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B4E299;B3KU67;I6TRR8;H7C597 A0A140VK49 527 539 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.0010575 97.163 2 2 0.38632 0.53314 NaN 1 Median 0.38632 0.53314 NaN 1 0 Median NaN NaN NaN 0 0 Median 16058000 4079700 11978000 5878100 4079700 1798400 10179000 0 10179000 10578 508 10858 37868;37869;37870;37871 56826;56827;56828;56829 56826 4 SECLNNIGDSSPLIR AHFQNFPNGVTDFIKSECLNNIGDSSPLIR SECLNNIGDSSPLIRATVGILITTIASKGE K S E I R A 0 1 2 1 1 0 1 1 0 2 2 0 0 0 1 3 0 0 0 0 0 0 15 0 1673.8043 A0A024RAM0;Q92973;B4DSC0;E7EW37 A0A024RAM0 101 115 TNPO1 Transportin-1 yes no 2 5.2822E-07 103.75 2 0.52462 0.73616 19.024 2 Median 0.52462 0.73616 19.024 2 0 Median NaN NaN NaN 0 0 Median 7342800 4269500 3073200 7342800 4269500 3073200 0 0 0 10579 246 10859 37872;37873 56830;56831;56832 56831 3 SEDDESGAGELTR SETYLEAHRIVKMNKSEDDESGAGELTREE NKSEDDESGAGELTREELRQIAEEDFYEKL K S E T R E 1 1 0 2 0 0 3 2 0 0 1 0 0 0 0 2 1 0 0 0 0 0 13 0 1364.5692 B2RBA6;A0A0S2Z4A5;P33993;B3KUD7;B4DDF5;C6EMX8 B2RBA6 309 321 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 2 0.0011216 62.408 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1965500 1965500 0 1965500 1965500 0 0 0 0 10580 464 10860 37874 56833 56833 1 SEDDSAKFDSNEEDSASVFSPSFGLK QDFGNLFSFPSYSQKSEDDSAKFDSNEEDS EEDSASVFSPSFGLKQTDKVPSKTVAAKKG K S E L K Q 2 0 1 4 0 0 3 1 0 0 1 2 0 3 1 7 0 0 0 1 0 0 26 1 2794.2093 Q71UH4;Q02880;Q59H80;B4DLV2;Q8WTY5;B7ZB27 Q71UH4 1429 1454 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 3 5.8193E-07 76.98 4 0.74021 0.92137 13.916 4 Median 0.74021 0.92137 13.916 4 0 Median NaN NaN NaN 0 0 Median 25058000 13727000 11331000 25058000 13727000 11331000 0 0 0 10581 1437 10861 37875;37876;37877;37878 56834;56835;56836;56837;56838;56839;56840;56841;56842;56843;56844 56835 11 SEDGEIVSTPR ASEVGKEEFLDRLIRSEDGEIVSTPRLQYY RLIRSEDGEIVSTPRLQYYDKVLRLLDVIG R S E P R L 0 1 0 1 0 0 2 1 0 1 0 0 0 0 1 2 1 0 0 1 0 0 11 0 1188.5622 G3V198;Q12769;E9PR16 G3V198 914 924 NUP160 Nuclear pore complex protein Nup160 yes no 2 0.0021127 66.19 2 1.0915 1.4208 1.5524 2 Median NaN NaN NaN 0 0 Median 1.0915 1.4208 1.5524 2 0 Median 9324500 4463700 4860700 0 0 0 9324500 4463700 4860700 10582 1077 10862 37879;37880 56845;56846 56845 2 SEDGVEGDLGETQSR EYQRIYTTKIKPRLKSEDGVEGDLGETQSR SEDGVEGDLGETQSRTITVTRRVTAYTVDV K S E S R T 0 1 0 2 0 1 3 3 0 0 1 0 0 0 0 2 1 0 0 1 0 0 15 0 1577.6805 Q09666;B4DTV0 Q09666 135 149 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 5.9555E-41 210.44 4 0.37954 0.52464 12.694 3 Plateau 0.37954 0.52464 12.694 3 0 Plateau NaN NaN NaN 0 0 Median 23480000 16539000 6941600 23480000 16539000 6941600 0 0 0 10583 1453 10863 37881;37882;37883;37884 56847;56848;56849;56850;56851;56852;56853;56854 56852 8 SEDLDNSIDK ELEAINKRVKDTMARSEDLDNSIDKTEAGI DTMARSEDLDNSIDKTEAGIKELQKSMERW R S E D K T 0 0 1 3 0 0 1 0 0 1 1 1 0 0 0 2 0 0 0 0 0 0 10 0 1134.5041 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 880 889 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.0045733 64.04 1 0.47734 0.60449 NaN 1 Median 0.47734 0.60449 NaN 1 0 Median NaN NaN NaN 0 0 Median 6328700 4296300 2032400 6328700 4296300 2032400 0 0 0 10584 663 10864 37885 56855 56855 1 SEDLLDYGPFR SRNVESYTKLGNPTRSEDLLDYGPFRDVPA NPTRSEDLLDYGPFRDVPAYSQDTFKVHYE R S E F R D 0 1 0 2 0 0 1 1 0 0 2 0 0 1 1 1 0 0 1 0 0 0 11 0 1310.6143 Q96HX3;Q6IBR0;Q53EP4;P04843;B7Z4L4;B4DL99 Q96HX3 155 165 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 0.0010252 89.247 2 2 0.48718 0.67524 97.396 3 Median 0.45943 0.63672 8.3085 2 0 Median 2.5797 3.4296 NaN 1 0 Median 18034000 8233900 9800200 9503200 6772400 2730800 8530800 1461500 7069400 10585 1233 10865 37886;37887;37888;37889 56856;56857;56858;56859 56858 2 SEDQDLQGLK SGGGGGGEEERLEEKSEDQDLQGLKDKPLK RLEEKSEDQDLQGLKDKPLKFKKVKKDKKE K S E L K D 0 0 0 2 0 2 1 1 0 0 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1131.5408 A0A140VKC4;D9ZNA4;D5L9I5;D3YJ43;D0UU70;A8K079;E9LUH4;P51608;E1B2J3;E9LUH3;C6KG45;D6QZ43;A0A087X1U4;C6KG44;A0A087WVW7;B5MCB4;I6LM39;A0A0S2Z401;A0A0D9SFX7;D5L9I4;A0A0S2Z3U3;A0A075BPH5;A0A0D9SEX1;C9JH89;A0A0S2Z3V4 A0A140VKC4 25 34 MECP2 Methyl-CpG-binding protein 2 yes no 2 0.00037953 123.98 1 1 0.60834 0.84108 21.213 2 Median 0.7527 0.97719 NaN 1 0 Median 0.49167 0.72392 NaN 1 0 Median 10454000 6649000 3804600 2161300 1063200 1098100 8292300 5585800 2706500 10586 512 10866 37890;37891 56860;56861 56860 2 SEDSSGAAGLSGLHR EDKLKREEEKREAEKSEDSSGAAGLSGLHR SEDSSGAAGLSGLHRTYSQDCSFKNSMYHV K S E H R T 2 1 0 1 0 0 1 3 1 0 2 0 0 0 0 4 0 0 0 0 0 0 15 0 1442.675 Q86U86;E7EVG2;H0Y5B5;Q9NUX9 Q86U86 931 945 PBRM1 Protein polybromo-1 yes no 2 0.02433 39.73 1 0.63512 0.84118 NaN 1 Median NaN NaN NaN 0 0 Median 0.63512 0.84118 NaN 1 0 Median 2731000 1786900 944090 0 0 0 2731000 1786900 944090 10587 1620 10867 37892 56862 56862 1 SEDSTKDDIDLDALAAEIEGAGAAK ______________________________ LDALAAEIEGAGAAKEQEPQKSKGKKKKEK K S E A K E 6 0 0 5 0 0 3 2 0 2 2 2 0 0 0 2 1 0 0 0 0 0 25 1 2504.1766 Q8N5A0;A0A087WUT6;O60841;A0JLR8;Q05CQ1 Q8N5A0 9 33 EIF5B Eukaryotic translation initiation factor 5B yes no 3 0.013971 21.034 1 1.0608 1.3283 NaN 1 Median 1.0608 1.3283 NaN 1 0 Median NaN NaN NaN 0 0 Median 7788900 4014600 3774300 7788900 4014600 3774300 0 0 0 10588 345 10868 37893 56863 56863 1 SEEEFIHINNK EGVKLQVMANSRNYKSEEEFIHINNKLRRG RNYKSEEEFIHINNKLRRGDIIGVQGNPGK K S E N K L 0 0 2 0 0 0 3 0 1 2 0 1 0 1 0 1 0 0 0 0 0 0 11 0 1358.6466 Q15046;J3KRL2;H3BVA8 Q15046 165 175 KARS Lysine--tRNA ligase yes no 2 0.022327 60.436 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1897800 1897800 0 1897800 1897800 0 0 0 0 10589 1502 10869 37894 56864 56864 1 SEEELLVIFNK KVLAQYYTVTDEHHRSEEELLVIFNKKISK EHHRSEEELLVIFNKKISKNPTFKLLKDKV R S E N K K 0 0 1 0 0 0 3 0 0 1 2 1 0 1 0 1 0 0 0 1 0 0 11 0 1319.6973 Q9NX58;A8K3Y5 Q9NX58 350 360 LYAR Cell growth-regulating nucleolar protein yes no 2 5.7983E-06 107.15 1 1 0.74692 1.0359 24.396 2 Median 0.97017 1.2309 NaN 1 0 Median 0.57504 0.87175 NaN 1 0 Median 31443000 18014000 13429000 17622000 8719300 8903100 13821000 9295100 4525900 10590 1766 10870 37895;37896 56865;56866 56866 1 SEEELLVIFNKK KVLAQYYTVTDEHHRSEEELLVIFNKKISK HHRSEEELLVIFNKKISKNPTFKLLKDKVK R S E K K I 0 0 1 0 0 0 3 0 0 1 2 2 0 1 0 1 0 0 0 1 0 0 12 1 1447.7922 Q9NX58;A8K3Y5 Q9NX58 350 361 LYAR Cell growth-regulating nucleolar protein yes no 2 0.0031775 55.461 1 1.5238 1.8018 NaN 1 Median 1.5238 1.8018 NaN 1 0 Median NaN NaN NaN 0 0 Median 3883800 1568700 2315100 3883800 1568700 2315100 0 0 0 10591 1766 10871 37897 56867 56867 1 SEEGNVSAPGPESK KSSSEPPPRKPVEEKSEEGNVSAPGPESKQ KSEEGNVSAPGPESKQATTPASRKSSKQVS K S E S K Q 1 0 1 0 0 0 3 2 0 0 0 1 0 0 2 3 0 0 0 1 0 0 14 0 1386.6263 Q03164;E9PR05;H7BYJ6;B3W6H7;Q8N6B4;Q1HA41 Q03164 1271 1284 KMT2A;TET1-MLL;MLL/CALM fusion;MLL-MAML2 Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 1.4864E-20 171.49 4 2 1.0565 1.4084 20.72 6 Median 1.5123 1.4084 26.257 4 0 Linear 0.97167 1.4541 5.4965 2 0 Median 50278000 25101000 25177000 30312000 14625000 15686000 19967000 10476000 9491000 10592 1438 10872 37898;37899;37900;37901;37902;37903 56868;56869;56870;56871;56872;56873;56874;56875;56876;56877 56869 10 SEEGPGWTILR ASSRKKPKAKQTEVKSEEGPGWTILRDDFM TEVKSEEGPGWTILRDDFMMGASMKDWDKE K S E L R D 0 1 0 0 0 0 2 2 0 1 1 0 0 0 1 1 1 1 0 0 0 0 11 0 1243.6197 Q9Y3B9;A8K201 Q9Y3B9 240 250 RRP15 RRP15-like protein yes no 2 0.0016267 68.557 2 0.47606 0.69301 17.221 2 Median NaN NaN NaN 0 0 Median 0.47606 0.69301 17.221 2 0 Median 15147000 10317000 4829600 0 0 0 15147000 10317000 4829600 10593 1816 10873 37904;37905 56878;56879;56880 56880 3 SEELNLPEGK WLVHRDGFSLASQLKSEELNLPEGKVRVKL ASQLKSEELNLPEGKVRVKLDHDGAILDVD K S E G K V 0 0 1 0 0 0 3 1 0 0 2 1 0 0 1 1 0 0 0 0 0 0 10 0 1114.5506 A0A0D9SFK2;A0A024QZ63;Q92614;B4E0T8;H0YEV9 A0A0D9SFK2 368 377 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 2 0.051207 65.157 1 0.97339 1.2359 NaN 1 Median 0.97339 1.2359 NaN 1 0 Median NaN NaN NaN 0 0 Median 4386200 2097600 2288600 4386200 2097600 2288600 0 0 0 10594 6 10874 37906 56881 56881 0 SEEPAGQILSHLSSELK PTSSQDEELMEVVEKSEEPAGQILSHLSSE EPAGQILSHLSSELKEMSTSNFESSPEVEE K S E L K E 1 0 0 0 0 1 3 1 1 1 3 1 0 0 1 4 0 0 0 0 0 0 17 0 1823.9265 A0A140VK53;Q9UQ35;O60382 A0A140VK53 1245 1261 SRRM2;KIAA0324 Serine/arginine repetitive matrix protein 2 yes no 3 0.043771 14.276 1 1.3334 2.0276 NaN 1 Median NaN NaN NaN 0 0 Median 1.3334 2.0276 NaN 1 0 Median 12141000 4624800 7516400 0 0 0 12141000 4624800 7516400 10595 509 10875 37907 56882 56882 1 SEESPVYSNSSVR SRRISRRPSDWWVVKSEESPVYSNSSVRNE VKSEESPVYSNSSVRNELPMHHNSSRKSTK K S E V R N 0 1 1 0 0 0 2 0 0 0 0 0 0 0 1 5 0 0 1 2 0 0 13 0 1439.6529 Q03188;H0Y8J2 Q03188 535 547 CENPC Centromere protein C yes no 2 0.0016834 78.342 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2292800 2292800 0 2292800 2292800 0 0 0 0 10596 1439 10876 37908;37909 56883;56884 56884 2 SEETNTEIVECILK STEFRNIQKLPVESKSEETNTEIVECILKR KSEETNTEIVECILKRGQKATLLQQRREGE K S E L K R 0 0 1 0 1 0 4 0 0 2 1 1 0 0 0 1 2 0 0 1 0 0 14 0 1663.7975 P46013 P46013 893 906 MKI67 Antigen KI-67 yes yes 2 1.7616E-62 245.08 4 2 0.95085 1.2166 2.6398 6 Plateau 0.93934 1.2329 2.2809 4 0 Median 0.74579 1.189 2.2516 2 0 Median 629620000 332710000 296910000 489550000 252200000 237350000 140060000 80502000 59560000 10597 1342 10877 37910;37911;37912;37913;37914;37915 56885;56886;56887;56888;56889;56890;56891;56892;56893;56894;56895;56896;56897;56898;56899 56889 15 SEFEQNLSEK DHLRDVLRVQEQELKSEFEQNLSEKLSEQE EQELKSEFEQNLSEKLSEQELQFRRLSQEQ K S E E K L 0 0 1 0 0 1 3 0 0 0 1 1 0 1 0 2 0 0 0 0 0 0 10 0 1209.5513 B4DS66;C9J406;H7C463;Q16891;B9A067;B4DQY2;B4DKR1;B4DT20 Q16891 507 516 IMMT MICOS complex subunit MIC60 no no 2 0.00052103 112.11 2 2 1.5673 2.3725 72.636 3 Median 0.53611 0.68012 NaN 1 0 Median 1.5874 2.3929 1.2158 2 0 Median 44461000 23791000 20670000 17014000 12754000 4260300 27447000 11037000 16410000 10598 1524;854 10878 37916;37917;37918;37919 56900;56901;56902;56903 56901 4 SEFLSTAPR GHSASDKVQPKNNDKSEFLSTAPRSLRKRL PKNNDKSEFLSTAPRSLRKRLIVPRSHSDS K S E P R S 1 1 0 0 0 0 1 0 0 0 1 0 0 1 1 2 1 0 0 0 0 0 9 0 1006.5084 A0A024R411;Q13416;B4DYU9 A0A024R411 156 164 ORC2L;ORC2 Origin recognition complex subunit 2 yes no 2 0.014354 56.81 1 1 0.36168 0.48918 2.6672 2 Median 0.36623 0.48004 NaN 1 0 Median 0.3572 0.4985 NaN 1 0 Median 14356000 10756000 3599800 8064600 6277300 1787300 6291000 4478500 1812500 10599 114 10879 37920;37921 56904;56905 56904 2 SEFVILRDEK NGVLSFIKHVLFPLKSEFVILRDEKWGGNK LFPLKSEFVILRDEKWGGNKTYTAYVDLEK K S E E K W 0 1 0 1 0 0 2 0 0 1 1 1 0 1 0 1 0 0 0 1 0 0 10 1 1234.6558 A0A0S2Z4R1;P54577;A0A0C4DGZ5 A0A0S2Z4R1 273 282 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.00019279 123.86 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6189300 6189300 0 6189300 6189300 0 0 0 0 10600 468 10880 37922 56906 56906 1 SEGALELADVSNELPGLK NPIEDEAVIASLLEKSEGALELADVSNELP ALELADVSNELPGLKWMPGITQWKVMTKDG K S E L K W 2 0 1 1 0 0 3 2 0 0 4 1 0 0 1 2 0 0 0 1 0 0 18 0 1840.9418 Q08J23 Q08J23 339 356 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 6.4115E-19 185.32 2 0.30672 0.38934 0.84498 2 Median 0.30672 0.38934 0.84498 2 0 Median NaN NaN NaN 0 0 Median 35427000 27435000 7992700 35427000 27435000 7992700 0 0 0 10601 1451 10881 37923;37924 56907;56908;56909 56908 3 SEGFDTYR SMDSSHVSLVQLTLRSEGFDTYRCDRNLAM LVQLTLRSEGFDTYRCDRNLAMGVNLTSMS R S E Y R C 0 1 0 1 0 0 1 1 0 0 0 0 0 1 0 1 1 0 1 0 0 0 8 0 973.41412 Q6FI35;Q6FHF5;P12004;Q7Z6A3;Q7Z6A2;Q7Z6A1;B4DUA2 Q6FI35 54 61 PCNA Proliferating cell nuclear antigen yes no 2 0.0069734 75.738 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11186000 11186000 0 11186000 11186000 0 0 0 0 10602 1259 10882 37925 56910 56910 1 SEGSEYEEIPK NHPPAPRGRTASETRSEGSEYEEIPKRRRQ SETRSEGSEYEEIPKRRRQRGSETGSETHE R S E P K R 0 0 0 0 0 0 4 1 0 1 0 1 0 0 1 2 0 0 1 0 0 0 11 0 1266.5616 P48634;B4DLY2 P48634 1089 1099 PRRC2A Protein PRRC2A yes no 2 0.030693 68.657 1 0.79147 1.0134 NaN 1 Median 0.79147 1.0134 NaN 1 0 Median NaN NaN NaN 0 0 Median 2584300 1487200 1097200 2584300 1487200 1097200 0 0 0 10603 1348 10883 37926 56911 56911 1 SEGTYLNSVIESHTEFIFTTIK NLVPTDEITVYYKAKSEGTYLNSVIESHTE SVIESHTEFIFTTIKAPLKPYPVSPSDKVL K S E I K A 0 0 1 0 0 0 3 1 1 3 1 1 0 2 0 3 4 0 1 1 0 0 22 0 2515.2482 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z355;B4DVX2;Q6P0M4;Q7L4K8;Q9P1N9;Q5TCC6 Q59G75 1034 1055 IARS;DKFZp686L17145 Isoleucine--tRNA ligase, cytoplasmic yes no 3 1.4486E-07 85.177 1 0.42033 0.52727 NaN 1 Median 0.42033 0.52727 NaN 1 0 Median NaN NaN NaN 0 0 Median 3784100 2601500 1182600 3784100 2601500 1182600 0 0 0 10604 1334 10884 37927 56912 56912 0 SEGVVAVLLTK GTCKAFDTAGNGYCRSEGVVAVLLTKKSLA GYCRSEGVVAVLLTKKSLARRVYATILNAG R S E T K K 1 0 0 0 0 0 1 1 0 0 2 1 0 0 0 1 1 0 0 3 0 0 11 0 1114.6598 A0A0U1RQF0;P49327 A0A0U1RQF0 225 235 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0023156 104.22 1 0.67776 0.87958 NaN 1 Median 0.67776 0.87958 NaN 1 0 Median NaN NaN NaN 0 0 Median 4531800 2387800 2144100 4531800 2387800 2144100 0 0 0 10605 486 10885 37928 56913;56914 56914 2 SEHGPISFFPESGQPECLK GKPYRSKAGLAYHLRSEHGPISFFPESGQP PISFFPESGQPECLKEMNLESKSGGRVQRR R S E L K E 0 0 0 0 1 1 3 2 1 1 1 1 0 2 3 3 0 0 0 0 0 0 19 0 2144.9837 B4DES6;B7Z9P6;G3XAG1;Q96ME7;Q658M0;B4E0X7 B4DES6 203 221 ZNF512;DKFZp666L156 Zinc finger protein 512 yes no 3 3.5193E-05 73.735 3 0.71418 0.88304 0.66022 3 Plateau 0.71418 0.88304 0.66022 3 0 Plateau NaN NaN NaN 0 0 Median 48536000 28648000 19887000 48536000 28648000 19887000 0 0 0 10606 799 10886 37929;37930;37931 56915;56916;56917;56918 56918 4 SEHPGLSIGDTAK SAFFLFCSEHRPKIKSEHPGLSIGDTAKKL IKSEHPGLSIGDTAKKLGEMWS________ K S E A K K 1 0 0 1 0 0 1 2 1 1 1 1 0 0 1 2 1 0 0 0 0 0 13 0 1310.6466 D6R9A6;Q5U071;P26583 D6R9A6 115 127 HMGB2 High mobility group protein B2 yes no 2;3 3.7417E-12 154.15 7 4 1.2218 1.4899 28.867 11 Median 1.3265 1.651 6.5772 7 0 Median 0.60616 0.94137 7.3823 4 0 Median 280160000 145470000 134690000 137400000 58522000 78874000 142760000 86943000 55816000 10607 988 10887 37932;37933;37934;37935;37936;37937;37938;37939;37940;37941;37942 56919;56920;56921;56922;56923;56924;56925;56926;56927;56928;56929;56930;56931;56932;56933;56934 56919 16 SEIEYYAMLAK AKLVILANNCPALRKSEIEYYAMLAKTGVH ALRKSEIEYYAMLAKTGVHHYSGNNIELGT K S E A K T 2 0 0 0 0 0 2 0 0 1 1 1 1 0 0 1 0 0 2 0 0 0 11 0 1316.6322 E5RI99;A0A024R9D3;P62888 E5RI99 58 68 RPL30 60S ribosomal protein L30 yes no 2 7.5719E-06 109.48 3 2 0.66674 0.90648 8.4457 4 Median 0.77876 0.96278 9.57 2 0 Median 0.57564 0.87636 5.8282 2 0 Median 78084000 48650000 29433000 36964000 20757000 16206000 41120000 27893000 13227000 10608 219 10888;10889 37943;37944;37945;37946;37947 56935;56936;56937;56938;56939;56940;56941 56938 94 7 SEIIPETNQIYENDNK DSKIGKKPRLNVCQKSEIIPETNQIYENDN EIIPETNQIYENDNKGVHDLEKDNFFSLTP K S E N K G 0 0 3 1 0 1 3 0 0 3 0 1 0 0 1 1 1 0 1 0 0 0 16 0 1905.8956 Q562F6;B7Z7S9 Q562F6 816 831 SGOL2 Shugoshin-like 2 yes no 2 4.9205E-10 131.13 4 1 0.82523 1.0486 9.1693 5 Median 0.82138 1.0327 4.7274 4 0 Median 0.82523 1.2476 NaN 1 0 Median 53000000 28623000 24377000 37911000 20775000 17137000 15088000 7848100 7240100 10609 1546 10890 37948;37949;37950;37951;37952 56942;56943;56944;56945;56946;56947;56948;56949;56950;56951 56945 10 SEISELRR NREVATNSELVQSGKSEISELRRTMQNLEI ELVQSGKSEISELRRTMQNLEIELQSQLSM K S E R R T 0 2 0 0 0 0 2 0 0 1 1 0 0 0 0 2 0 0 0 0 0 0 8 1 988.53016 CON__P02533;P02533;A0A024R1X6;Q13092;CON__Q04695;Q04695;F5GWP8;CON__Q9QWL7;Q14666 CON__P02533 329 336 KRT14;K14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 3 0.027137 26.105 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4494600 4494600 0 0 0 0 4494600 4494600 0 + 10610 949;965 10891 37953 56952 56952 1 SEISENTDASGKIEK ______________________________ SEISENTDASGKIEKYNVPLNRLKMMFEKG K S E E K Y 1 0 1 1 0 0 3 1 0 2 0 2 0 0 0 3 1 0 0 0 0 0 15 1 1606.7686 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VRN8 F8VQE1 15 29 LIMA1 LIM domain and actin-binding protein 1 yes no 2;3 4.795E-55 230.59 8 2 0.74035 0.9053 50.406 10 Median 0.73452 0.89892 28.024 8 0 Median 1.5654 2.2943 4.0178 2 0 Median 302720000 173460000 129270000 295380000 170700000 124680000 7339200 2752700 4586600 10611 834 10892 37954;37955;37956;37957;37958;37959;37960;37961;37962;37963 56953;56954;56955;56956;56957;56958;56959;56960;56961;56962;56963;56964;56965;56966;56967;56968;56969 56961 17 SEITELR TTEIDNNIEQISSYKSEITELRRNVQALEI IEQISSYKSEITELRRNVQALEIELQSQLA K S E L R R 0 1 0 0 0 0 2 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 7 0 846.4447 CON__P13645;P13645;CON__P02535-1 CON__P13645 363 369 KRT10 Keratin, type I cytoskeletal 10 yes no 2 0.049279 49.358 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15445000 15445000 0 0 0 0 15445000 15445000 0 + 10612 960 10893 37964 56970 56970 1 SEITELRR TTEIDNNIEQISSYKSEITELRRNVQALEI EQISSYKSEITELRRNVQALEIELQSQLAL K S E R R N 0 2 0 0 0 0 2 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 8 1 1002.5458 CON__P13645;P13645;CON__P02535-1 CON__P13645 363 370 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 0.00025092 119.27 4 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 497640000 497640000 0 352840000 352840000 0 144800000 144800000 0 + 10613 960 10894 37965;37966;37967;37968;37969;37970;37971 56971;56972;56973;56974;56975;56976;56977 56973 7 SEIVPLFTSLASDEQDSVR KLGEFAKVLELDSVKSEIVPLFTSLASDEQ PLFTSLASDEQDSVRLLAVEACVSIAQLLS K S E V R L 1 1 0 2 0 1 2 0 0 1 2 0 0 1 1 4 1 0 0 2 0 0 19 0 2092.0324 A8K8B0;P30154;B7Z1G3 A8K8B0 215 233 PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform yes no 2 0.00088217 79.466 1 0.70084 0.97826 NaN 1 Median 0.70084 0.97826 NaN 1 0 Median NaN NaN NaN 0 0 Median 4626300 2786700 1839700 4626300 2786700 1839700 0 0 0 10614 638 10895 37972 56978;56979 56978 2 SELEQLRQEAEQLR ______________________________ MSELEQLRQEAEQLRNQIRDARKACGDSTL M S E L R N 1 2 0 0 0 3 4 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 14 1 1727.8802 C9JZN1;C9JIS1;C9JXA5;Q6FHM2;P62879;C9JD14;A8K3F6;Q9HAV0 C9JZN1 2 15 GNB2;GNB4 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4 yes no 2 0.0041245 62.338 3 0.53962 0.74566 5.6579 3 Median 0.53962 0.74566 5.6579 3 0 Median NaN NaN NaN 0 0 Median 28245000 17318000 10926000 28245000 17318000 10926000 0 0 0 10615 938 10896 37973;37974;37975 56980;56981;56982 56981 3 SELEREVDK RVKRVCQKEELQKQKSELEREVDKLARENA ELQKQKSELEREVDKLARENAAMRLELDAL K S E D K L 0 1 0 1 0 0 3 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 9 1 1103.5459 Q9ULX9;B0QY70;B0QY71 Q9ULX9 84 92 MAFF Transcription factor MafF yes no 2 0.022089 70.908 1 1.1497 1.7316 NaN 1 Median NaN NaN NaN 0 0 Median 1.1497 1.7316 NaN 1 0 Median 8374400 3728700 4645700 0 0 0 8374400 3728700 4645700 10616 1793 10897 37976 56983;56984 56983 2 SELHLLDFQGK EMKRVAEAKKIERLKSELHLLDFQGKQQNK ERLKSELHLLDFQGKQQNKHVFFFDTKKEV K S E G K Q 0 0 0 1 0 1 1 1 1 0 3 1 0 1 0 1 0 0 0 0 0 0 11 0 1285.6667 Q9Y3A2 Q9Y3A2 121 131 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 2;3 1.4446E-05 126.39 6 2 1.0435 1.3114 17.865 8 Median 1.0793 1.3451 5.1637 6 0 Median 0.64659 0.93378 7.116 2 0 Median 122980000 63266000 59712000 111350000 55860000 55491000 11627000 7406000 4220900 10617 1814 10898 37977;37978;37979;37980;37981;37982;37983;37984 56985;56986;56987;56988;56989;56990;56991;56992;56993;56994;56995;56996 56993 12 SELLLAEEPGFLEGEDGEDTAK VAEAEEEETSIKAARSELLLAEEPGFLEGE EPGFLEGEDGEDTAKICQADIVEAVDIASA R S E A K I 2 0 0 2 0 0 6 3 0 0 4 1 0 1 1 1 1 0 0 0 0 0 22 0 2348.0907 B0UZZ8;B4DNI0;O15213;A8K9A1;A8K806;A0A140T9L0;A0A0G2JJL1;H0Y6G3 B0UZZ8 149 170 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2 1.7882E-97 236.4 4 0.88541 1.0959 7.7265 4 Median 0.88541 1.0959 7.7265 4 0 Median NaN NaN NaN 0 0 Median 123700000 68800000 54899000 123700000 68800000 54899000 0 0 0 10618 668 10899 37985;37986;37987;37988 56997;56998;56999;57000;57001;57002;57003;57004 57000 8 SELLVPGSQLILGPHESK VTENKISDQDLNRMRSELLVPGSQLILGPH LVPGSQLILGPHESKIPILLIQQPGKVTGE R S E S K I 0 0 0 0 0 1 2 2 1 1 4 1 0 0 2 3 0 0 0 1 0 0 18 0 1903.0415 Q96F88;Q99575 Q96F88 577 594 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 3 0.0029799 50.188 2 0.39336 0.50088 28.444 2 Median 0.39336 0.50088 28.444 2 0 Median NaN NaN NaN 0 0 Median 14494000 10843000 3650600 14494000 10843000 3650600 0 0 0 10619 1685 10900 37989;37990 57005;57006;57007 57006 3 SELSQDAEPAGSQETK ILLREFEERRSLRKRSELSQDAEPAGSQET ELSQDAEPAGSQETKDSGSQEVLSELRVLS R S E T K D 2 0 0 1 0 2 3 1 0 0 1 1 0 0 1 3 1 0 0 0 0 0 16 0 1675.7537 Q9BVJ6;B4E343;X6RJY0 Q9BVJ6 434 449 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 0.0062053 39.878 2 0.34755 0.4837 NaN 1 Median NaN NaN NaN 0 0 Median 0.34755 0.4837 NaN 1 0 Median 6715700 5492400 1223300 0 0 0 6715700 5492400 1223300 10620 1719 10901 37991;37992 57008;57009;57010 57009 3 SELVANNVTLPAGEQR EFLEDPSVLTKDKLKSELVANNVTLPAGEQ ELVANNVTLPAGEQRKDVYVQLYLQHLTAR K S E Q R K 2 1 2 0 0 1 2 1 0 0 2 0 0 0 1 1 1 0 0 2 0 0 16 0 1696.8744 A0A024RBE7;P42167;G5E972;A0A024RBH7;Q59G12;P42166 P42166 18 33 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin no no 2 6.1582E-60 223.36 4 2 0.52965 0.73631 11.795 6 Median 0.5256 0.7048 5.3663 4 0 Median 0.5405 0.87819 4.428 2 0 Median 228780000 147550000 81226000 95578000 60998000 34579000 133200000 86553000 46646000 10621 1335;270 10902 37993;37994;37995;37996;37997;37998 57011;57012;57013;57014;57015;57016;57017;57018;57019;57020;57021;57022;57023 57016 13 SELVANNVTLPAGEQRK EFLEDPSVLTKDKLKSELVANNVTLPAGEQ LVANNVTLPAGEQRKDVYVQLYLQHLTARN K S E R K D 2 1 2 0 0 1 2 1 0 0 2 1 0 0 1 1 1 0 0 2 0 0 17 1 1824.9694 A0A024RBE7;P42167;G5E972;A0A024RBH7;Q59G12;P42166 P42166 18 34 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin no no 3 4.2493E-06 88.311 4 2 0.50726 0.74126 12.46 6 Median 0.51667 0.68154 11.828 4 0 Median 0.49021 0.79901 8.948 2 0 Median 80285000 52445000 27840000 46213000 29827000 16386000 34071000 22618000 11454000 10622 1335;270 10903 37999;38000;38001;38002;38003;38004 57024;57025;57026;57027;57028;57029;57030;57031;57032;57033;57034 57031 11 SELYFLIAR ______________________________ GLSELRSELYFLIARFLEDGPCQQAAQVLI R S E A R F 1 1 0 0 0 0 1 0 0 1 2 0 0 1 0 1 0 0 1 0 0 0 9 0 1110.6073 Q8WWQ0 Q8WWQ0 13 21 PHIP PH-interacting protein yes yes 2 1.5778E-05 138.83 4 2 0.87993 1.2332 7.7899 6 Median 0.90167 1.2045 5.8751 4 0 Median 0.85637 1.3392 0.80552 2 0 Median 143420000 77044000 66377000 87083000 46816000 40267000 56338000 30228000 26110000 10623 1668 10904 38005;38006;38007;38008;38009;38010 57035;57036;57037;57038;57039;57040;57041;57042;57043;57044;57045 57038 11 SEMTPEELQK ______________________________ LNKPKSEMTPEELQKREEEEFNTGPLSVLT K S E Q K R 0 0 0 0 0 1 3 0 0 0 1 1 1 0 1 1 1 0 0 0 0 0 10 0 1190.5489 P62316;K7ERG4 P62316 9 18 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 2 0.010013 62.582 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7349500 7349500 0 0 0 0 7349500 7349500 0 10624 1408 10905 38011;38012 57046;57047 57046 616 2 SENALSGGQSSLFIHAGAPTVSSENFILPK KNNTLTLPEELSKDKSENALSGGQSSLFIH AGAPTVSSENFILPKGAAVNGPVSHSSLTK K S E P K G 3 0 2 0 0 1 2 3 1 2 3 1 0 2 2 6 1 0 0 1 0 0 30 0 3057.5407 A7E234;Q9H582;Q569I6;Q9H835 A7E234 83 112 ZNF644 Zinc finger protein 644 yes no 3 9.5598E-05 66.972 2 0.45101 0.58245 NaN 1 Median 0.45101 0.58245 NaN 1 0 Median NaN NaN NaN 0 0 Median 7181000 5127000 2054000 7181000 5127000 2054000 0 0 0 10625 573 10906 38013;38014 57048;57049;57050 57048 3 SENGLEFTSSGSANTETTK KGYGFGLIKLDLKTKSENGLEFTSSGSANT LEFTSSGSANTETTKVTGSLETKYRWTEYG K S E T K V 1 0 2 0 0 0 3 2 0 0 1 1 0 1 0 4 4 0 0 0 0 0 19 0 1958.8705 A0A1L1UHR1;P21796;B3KTS5;C9JI87 A0A1L1UHR1 35 53 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2 4.7351E-72 225.85 5 2 0.78272 1.0145 68.567 6 Median 0.72885 0.93973 9.1267 4 0 Median 2.3094 3.5746 4.487 2 0 Median 374350000 206620000 167730000 321840000 191310000 130520000 52517000 15309000 37207000 10626 524 10907 38015;38016;38017;38018;38019;38020;38021 57051;57052;57053;57054;57055;57056;57057;57058;57059;57060;57061;57062;57063;57064 57054 14 SENLGQGDKPDYFSSVATVVYLR VGGSNTNWKTLYEVKSENLGQGDKPDYFSS KPDYFSSVATVVYLRKENCMYQACPTQDCN K S E L R K 1 1 1 2 0 1 1 2 0 0 2 1 0 1 1 3 1 0 2 3 0 0 23 1 2544.2496 P27694 P27694 450 472 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 3 7.8678E-06 95.195 4 0.5292 0.71609 33.988 3 Median 0.5292 0.71609 33.988 3 0 Median NaN NaN NaN 0 0 Median 27210000 16015000 11194000 27210000 16015000 11194000 0 0 0 10627 1302 10908 38022;38023;38024;38025 57065;57066;57067;57068;57069;57070 57066 5 SENVDVGKPALGK APSIRRRSTRNTPAKSENVDVGKPALGKSI AKSENVDVGKPALGKSILVPNEELSMVMSS K S E G K S 1 0 1 1 0 0 1 2 0 0 1 2 0 0 1 1 0 0 0 2 0 0 13 1 1312.6987 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 2017 2029 AHCTF1 Protein ELYS yes no 2;3 6.6536E-12 133.91 5 2 0.75883 0.96727 5.3602 6 Median 0.80435 0.99322 5.6229 4 0 Median 0.57355 0.9209 3.5039 2 0 Median 132220000 80143000 52075000 73246000 42216000 31030000 58971000 37927000 21045000 10628 1670 10909 38026;38027;38028;38029;38030;38031;38032 57071;57072;57073;57074;57075;57076;57077;57078;57079;57080 57077 10 SEPHSPGIPEIFR ILNRGHSSSSSKGIKSEPHSPGIPEIFRTA IKSEPHSPGIPEIFRTASQRCRDPPSNPVA K S E F R T 0 1 0 0 0 0 2 1 1 2 0 0 0 1 3 2 0 0 0 0 0 0 13 0 1464.7361 Q8ND82;Q9UJJ2 Q8ND82 76 88 ZNF280C Zinc finger protein 280C yes no 3 0.019796 49.243 2 1 0.71362 0.9948 11.43 3 Median 0.75279 1.0321 5.2042 2 0 Median 0.61591 0.85569 NaN 1 0 Median 18279000 10225000 8054100 12146000 6631200 5514800 6133200 3593800 2539300 10629 1652 10910 38033;38034;38035 57081;57082;57083;57084 57084 4 SEPSGEINIDSSGETVGSGER RNSSAFSYQRQTSNRSEPSGEINIDSSGET INIDSSGETVGSGERCVMAMLRRRIRDEKT R S E E R C 0 1 1 1 0 0 4 4 0 2 0 0 0 0 1 5 1 0 0 1 0 0 21 0 2105.9349 P42695;G3V1A9;E9PKK4 P42695 520 540 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.0017697 102.29 2 1 0.20055 0.29173 NaN 1 Median NaN NaN NaN 0 0 Median 0.20055 0.29173 NaN 1 0 Median 6860000 4797600 2062300 518480 0 518480 6341500 4797600 1543900 10630 1338 10911 38036;38037;38038 57085;57086;57087 57085 3 SEQLEELFSQVGPVK AGLTLFVGRLPPSARSEQLEELFSQVGPVK SEQLEELFSQVGPVKQCFVVTEKGSKACRG R S E V K Q 0 0 0 0 0 2 3 1 0 0 2 1 0 1 1 2 0 0 0 2 0 0 15 0 1688.8621 A0A024R753;Q9NW13;C9JAA9;C9JE21;A0A0S2Z5E5 A0A024R753 17 31 RBM28 RNA-binding protein 28 yes no 2 5.6013E-74 246.56 3 2 1.1286 1.4138 14.787 5 Median 1.1548 1.5006 3.0665 3 0 Plateau 0.73313 1.1105 0.26427 2 0 Median 130040000 67848000 62192000 88862000 44257000 44605000 41179000 23592000 17587000 10631 169 10912 38039;38040;38041;38042;38043 57088;57089;57090;57091;57092;57093;57094;57095;57096 57089 8 SEQPTLVTASK HEDCITALCFCNAEKSEQPTLVTASKDGYF NAEKSEQPTLVTASKDGYFKVWILTDDSDI K S E S K D 1 0 0 0 0 1 1 0 0 0 1 1 0 0 1 2 2 0 0 1 0 0 11 0 1159.6085 A8K330;Q8IWA0 A8K330 456 466 WDR75 WD repeat-containing protein 75 yes no 2 9.5961E-06 114.51 3 2 0.8232 1.3293 7.8865 4 Linear 0.97673 1.2143 12.747 2 0 Median 0.76101 1.1577 1.1622 2 0 Median 116910000 50966000 65947000 74410000 27377000 47033000 42503000 23589000 18914000 10632 588 10913 38044;38045;38046;38047;38048 57097;57098;57099;57100;57101;57102;57103 57099 7 SESDLEETEPVVIPR KKVKKRNPWSDDESKSESDLEETEPVVIPR SESDLEETEPVVIPRDSLLRRAAAERPKYT K S E P R D 0 1 0 1 0 0 4 0 0 1 1 0 0 0 2 2 1 0 0 2 0 0 15 0 1698.8312 Q71UH4;Q02880;Q59H80;B4DLV2;Q8WTY5;B7ZB27 Q71UH4 1314 1328 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 3.2523E-41 214.26 4 2 0.51232 0.72409 25.897 5 Median 0.59469 0.82024 7.0118 3 0 Plateau 0.35584 0.50416 15.179 2 0 Median 46365000 30102000 16263000 23277000 14942000 8334700 23088000 15161000 7927800 10633 1437 10914 38049;38050;38051;38052;38053;38054 57104;57105;57106;57107;57108;57109 57105 6 SESFANYIDER INASLNQEKMNLIQKSESFANYIDEREKSI LIQKSESFANYIDEREKSISELSDQYKQEK K S E E R E 1 1 1 1 0 0 2 0 0 1 0 0 0 1 0 2 0 0 1 0 0 0 11 0 1329.5837 P49454 P49454 997 1007 CENPF Centromere protein F yes yes 2 0.0041214 96.342 1 2 1.0593 1.3715 0.15617 2 Median NaN NaN NaN 0 0 Median 1.0593 1.3715 0.15617 2 0 Median 8878500 4580200 4298200 0 0 0 8878500 4580200 4298200 10634 1351 10915 38055;38056;38057 57110;57111;57112 57112 3 SESHTDLTFSR IAKRDIEQIIRNYARSESHTDLTFSRELTN NYARSESHTDLTFSRELTNDERKQIHQIAQ R S E S R E 0 1 0 1 0 0 1 0 1 0 1 0 0 1 0 3 2 0 0 0 0 0 11 0 1278.584 Q6NUN2;A3F769;A3F768;O15226;A2I829 Q6NUN2 616 626 NKRF;NRF NF-kappa-B-repressing factor yes no 2 0.0026328 102.06 2 0.19174 0.26744 NaN 1 Median 0.19174 0.26744 NaN 1 0 Median NaN NaN NaN 0 0 Median 7869400 7300800 568580 7869400 7300800 568580 0 0 0 10635 541 10916 38058;38059 57113;57114 57113 2 SESIHVTLNVEQACYTR EKLTSRQMDSKWGGKSESIHVTLNVEQACY SIHVTLNVEQACYTRDALAKALHARVFDFL K S E T R D 1 1 1 0 1 1 2 0 1 1 1 0 0 0 0 2 2 0 1 2 0 0 17 0 2005.9527 Q4KMR3;Q12965;H0YLE5;H0YLJ4 Q4KMR3 336 352 MYO1E Unconventional myosin-Ie yes no 3 6.8977E-05 98.035 2 0.57206 0.77922 3.1444 2 Median 0.57206 0.77922 3.1444 2 0 Median NaN NaN NaN 0 0 Median 29788000 19617000 10171000 29788000 19617000 10171000 0 0 0 10636 1459 10917 38060;38061 57115;57116;57117;57118 57116 4 SESPKEPEQLRK ______________________________ MSKSESPKEPEQLRKLFIGGLSFETTDESL K S E R K L 0 1 0 0 0 1 3 0 0 0 1 2 0 0 2 2 0 0 0 0 0 0 12 2 1426.7416 F8W6I7;A0A024RB53;A0A024RAZ7;P09651;Q6IPF2;A0A024RC46;F8VTQ5;B4DP35;F8W646;B4E0B5 F8W6I7 4 15 HNRNPA1;HNRPA1;hCG_2020860 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 3 0.0018785 93.839 1 1 0.70211 0.98352 120.02 2 Median 0.34618 0.42092 NaN 1 0 Median 1.424 2.2981 NaN 1 0 Median 9996900 6577800 3419100 7850000 5770800 2079200 2146900 807010 1339900 10637 253 10918 38062;38063 57119;57120;57121 57119 3 SESSDFEVVPK IPSGPLRQREESETRSESSDFEVVPKRRRQ SETRSESSDFEVVPKRRRQRGSETDTDSEI R S E P K R 0 0 0 1 0 0 2 0 0 0 0 1 0 1 1 3 0 0 0 2 0 0 11 0 1222.5717 E7EPN9;Q9Y520;B4DM27 E7EPN9 1248 1258 PRRC2C Protein PRRC2C yes no 2 0.021235 49.06 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2599600 0 2599600 2599600 0 2599600 0 0 0 10638 1010 10919 38064 57122 57122 1 SESSTSAFSTPTR SSPERKKRILKPQLKSESSTSAFSTPTRSI LKSESSTSAFSTPTRSIPPRHNAAQINGKT K S E T R S 1 1 0 0 0 0 1 0 0 0 0 0 0 1 1 5 3 0 0 0 0 0 13 0 1356.6157 Q8WWQ0;Q9NWP3 Q8WWQ0 1471 1483 PHIP PH-interacting protein yes no 2 1.6311E-10 117.14 4 2 0.85034 1.1521 14.014 6 Median 0.86984 1.1889 4.5501 4 0 Median 0.56723 0.91511 5.1444 2 0 Median 209630000 136090000 73537000 104810000 55161000 49647000 104820000 80927000 23891000 10639 1668 10920 38065;38066;38067;38068;38069;38070 57123;57124;57125;57126;57127;57128;57129;57130;57131 57127 9 SETAPAAPAAAPPAEK ______________________________ ETAPAAPAAAPPAEKAPVKKKAAKKAGGTP M S E E K A 7 0 0 0 0 0 2 0 0 0 0 1 0 0 4 1 1 0 0 0 0 0 16 0 1477.7413 P16403 P16403 2 17 HIST1H1C Histone H1.2 yes yes 2 2.8968E-25 150.51 21 8 0.75133 0.99152 18.211 27 Median 0.7905 1.0226 17.92 19 0 Median 0.57833 0.91757 13.162 8 0 Median 4456900000 2534500000 1922500000 2909600000 1576100000 1333600000 1547300000 958430000 588890000 10640 1274 10921;10922 38071;38072;38073;38074;38075;38076;38077;38078;38079;38080;38081;38082;38083;38084;38085;38086;38087;38088;38089;38090;38091;38092;38093;38094;38095;38096;38097;38098;38099 57132;57133;57134;57135;57136;57137;57138;57139;57140;57141;57142;57143;57144;57145;57146;57147;57148;57149;57150;57151;57152;57153;57154;57155;57156;57157;57158;57159;57160;57161;57162;57163;57164;57165;57166;57167;57168;57169;57170;57171;57172;57173;57174;57175;57176;57177;57178;57179;57180;57181;57182;57183;57184;57185 57141 54 SETAPAAPAAPAPAEK ______________________________ ETAPAAPAAPAPAEKTPVKKKARKSAGAAK M S E E K T 7 0 0 0 0 0 2 0 0 0 0 1 0 0 4 1 1 0 0 0 0 0 16 0 1477.7413 B2R984;A3R0T8;P10412;Q4VB24;A3R0T7 B2R984 2 17 HIST1H1E Histone H1.4 yes no 2 6.0369E-14 138.2 5 3 0.9042 1.1916 25.209 8 Median 1.0553 1.3948 10.794 5 0 Median 0.61947 0.97667 17.551 3 0 Plateau 2174100000 1173300000 1000800000 1475200000 731380000 743790000 698940000 441890000 257040000 10641 542 10923;10924 38100;38101;38102;38103;38104;38105;38106;38107 57186;57187;57188;57189;57190;57191;57192;57193;57194;57195;57196;57197;57198 57188 13 SETAPAAPAAPAPAEKTPVK ______________________________ AAPAAPAPAEKTPVKKKARKSAGAAKRKAS M S E V K K 7 0 0 0 0 0 2 0 0 0 0 2 0 0 5 1 2 0 0 1 0 0 20 1 1903.0051 B2R984;A3R0T8;P10412;Q4VB24;A3R0T7 B2R984 2 21 HIST1H1E Histone H1.4 yes no 2 0.00036746 46.481 1 0.60897 0.9345 NaN 1 Median NaN NaN NaN 0 0 Median 0.60897 0.9345 NaN 1 0 Median 5505100 3449000 2056100 0 0 0 5505100 3449000 2056100 10642 542 10925 38108 57199 57199 1 SETAPAETATPAPVEK ______________________________ ETAPAETATPAPVEKSPAKKKATKKAAGAG M S E E K S 4 0 0 0 0 0 3 0 0 0 0 1 0 0 3 1 3 0 0 1 0 0 16 0 1597.7835 P16401;Q14463 P16401 2 17 HIST1H1B Histone H1.5 yes no 2 1.0337E-84 254.07 32 10 0.64379 0.8261 11.969 37 Median 0.77462 1.0212 10.625 27 0 Linear 0.47482 0.74089 8.4124 10 0 Median 6356400000 3938600000 2417800000 4137300000 2421200000 1716100000 2219100000 1517400000 701730000 10643 1273 10926;10927 38109;38110;38111;38112;38113;38114;38115;38116;38117;38118;38119;38120;38121;38122;38123;38124;38125;38126;38127;38128;38129;38130;38131;38132;38133;38134;38135;38136;38137;38138;38139;38140;38141;38142;38143;38144;38145;38146;38147;38148;38149;38150 57200;57201;57202;57203;57204;57205;57206;57207;57208;57209;57210;57211;57212;57213;57214;57215;57216;57217;57218;57219;57220;57221;57222;57223;57224;57225;57226;57227;57228;57229;57230;57231;57232;57233;57234;57235;57236;57237;57238;57239;57240;57241;57242;57243;57244;57245;57246;57247;57248;57249;57250;57251;57252;57253;57254;57255;57256;57257;57258;57259;57260;57261;57262;57263;57264;57265;57266;57267;57268;57269;57270;57271;57272;57273;57274;57275;57276;57277;57278;57279;57280;57281;57282;57283;57284;57285;57286;57287;57288;57289 57224 90 SEVELAAALSDK VAQGRVKDLESLFHRSEVELAAALSDKRGL FHRSEVELAAALSDKRGLESDVAELRAQLA R S E D K R 3 0 0 1 0 0 2 0 0 0 2 1 0 0 0 2 0 0 0 1 0 0 12 0 1231.6296 Q03252 Q03252 159 170 LMNB2 Lamin-B2 yes yes 2 0.00062733 85.958 1 2 1.8936 2.7587 2.6091 2 Median NaN NaN NaN 0 0 Median 1.8936 2.7587 2.6091 2 0 Median 15429000 3890900 11538000 3220600 0 3220600 12208000 3890900 8317200 10644 1440 10928 38151;38152;38153 57290;57291;57292 57290 3 SEVLAEESIVCLQK ______________________________ RSEVLAEESIVCLQKALNHLREIWELIGIP R S E Q K A 1 0 0 0 1 1 3 0 0 1 2 1 0 0 0 2 0 0 0 2 0 0 14 0 1603.8127 A0A024RC67;O43663;H0YM42;H0YLA0 A0A024RC67 4 17 PRC1 Protein regulator of cytokinesis 1 yes no 2 9.5298E-20 156.58 5 0.60213 0.76303 11.148 3 Median 0.60213 0.76303 11.148 3 0 Median NaN NaN NaN 0 0 Median 23373000 11951000 11422000 23373000 11951000 11422000 0 0 0 10645 288 10929 38154;38155;38156;38157;38158 57293;57294;57295;57296;57297;57298;57299;57300;57301 57294 9 SEVPEDLAGFIELFQTPSHTK SLTGSKRQLRTPKGKSEVPEDLAGFIELFQ LAGFIELFQTPSHTKESMTNEKTTKVSYRA K S E T K E 1 0 0 1 0 1 3 1 1 1 2 1 0 2 2 2 2 0 0 1 0 0 21 0 2344.1587 P46013 P46013 1704 1724 MKI67 Antigen KI-67 yes yes 2;3 2.6288E-31 196.97 4 0.94489 1.237 17.937 4 Median 0.94489 1.237 17.937 4 0 Median NaN NaN NaN 0 0 Median 384460000 196940000 187520000 384460000 196940000 187520000 0 0 0 10646 1342 10930 38159;38160;38161;38162 57302;57303;57304;57305;57306;57307;57308 57305 7 SEVPLVDVTK NNNLLLADQKSGQIKSEVPLVDVTKVSMSS SGQIKSEVPLVDVTKVSMSSQNDGFFAVHL K S E T K V 0 0 0 1 0 0 1 0 0 0 1 1 0 0 1 1 1 0 0 3 0 0 10 0 1085.5968 E9PDF6;B0I1S9;O43795;H7C2Y7;B3KQI2 E9PDF6 998 1007 MYO1B Unconventional myosin-Ib yes no 2 0.0072763 56.432 1 1.5724 1.9883 NaN 1 Median 1.5724 1.9883 NaN 1 0 Median NaN NaN NaN 0 0 Median 10756000 4736200 6019500 10756000 4736200 6019500 0 0 0 10647 665 10931 38163 57309 57309 1 SEVQQPVHPK RSTPAEDDSRDSQVKSEVQQPVHPKPLSPD DSQVKSEVQQPVHPKPLSPDSRASSLSESS K S E P K P 0 0 0 0 0 2 1 0 1 0 0 1 0 0 2 1 0 0 0 2 0 0 10 0 1147.5986 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2;F8VRN8 F8VQE1 190 199 LIMA1 LIM domain and actin-binding protein 1 yes no 2 1.6521E-05 130.75 4 1 0.72978 0.88656 40.712 5 Median 0.71304 0.88396 3.057 4 0 Median 1.4543 2.2081 NaN 1 0 Median 94483000 55117000 39366000 84260000 50848000 33412000 10223000 4268900 5954100 10648 834 10932 38164;38165;38166;38167;38168 57310;57311;57312;57313;57314;57315;57316;57317 57316 8 SEVSSDEDIQFR SDMDSILASLKLPPKSEVSSDEDIQFRLVT PPKSEVSSDEDIQFRLVTRFVNEAVMCLQE K S E F R L 0 1 0 2 0 1 2 0 0 1 0 0 0 1 0 3 0 0 0 1 0 0 12 0 1410.6263 B4DDZ5;H0YFD6;V9GZL3;E9KL44;P40939;B4DRH6 E9KL44 665 676 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase no no 2 1.1612E-09 129.85 4 2 0.58778 0.79761 26.284 6 Median 0.55487 0.74056 8.7819 4 0 Median 0.79416 1.2135 1.9843 2 0 Median 87411000 52284000 35127000 49654000 31953000 17701000 37757000 20331000 17426000 10649 1020;797 10933 38169;38170;38171;38172;38173;38174 57318;57319;57320;57321;57322;57323;57324;57325;57326;57327;57328;57329;57330;57331;57332 57323 15 SEVTELRR NKEVASNSELVQSSRSEVTELRRVLQGLEI ELVQSSRSEVTELRRVLQGLEIELQSQLSM R S E R R V 0 2 0 0 0 0 2 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 8 1 988.53016 CON__P08779;P08779;Q16195;K7ENW6 CON__P08779 331 338 KRT16;keratin Keratin, type I cytoskeletal 16 yes no 2 0.0047032 82.241 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8435000 8435000 0 0 0 0 8435000 8435000 0 + 10650 958 10934 38175 57333 57333 1 SEVTFSTPALYIYTSGTTGLPK KVDEVSTEPIPESWRSEVTFSTPALYIYTS PALYIYTSGTTGLPKAAMITHQRIWYGTGL R S E P K A 1 0 0 0 0 0 1 2 0 1 2 1 0 1 2 3 5 0 2 1 0 0 22 0 2332.1838 Q53GS2;O14975 Q53GS2 212 233 SLC27A2 Very long-chain acyl-CoA synthetase yes no 2 2.4124E-08 104.41 3 0.68991 0.84148 8.3147 3 Median 0.68991 0.84148 8.3147 3 0 Median NaN NaN NaN 0 0 Median 6207800 3326400 2881400 6207800 3326400 2881400 0 0 0 10651 1173 10935 38176;38177;38178 57334;57335;57336;57337 57336 4 SEWNTVER EYKVFVRKLRKAYGKSEWNTVERLKDNKPN LRKAYGKSEWNTVERLKDNKPNYKLDHIIK K S E E R L 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 8 0 1019.4672 B5MCF9;B2RDF2;O00541 B5MCF9 99 106 PES1 Pescadillo homolog yes no 2 0.031837 50.607 1 0.63774 0.91261 NaN 1 Median NaN NaN NaN 0 0 Median 0.63774 0.91261 NaN 1 0 Median 6172200 3803000 2369200 0 0 0 6172200 3803000 2369200 10652 735 10936 38179 57338 57338 1 SEYSELDEDESQAPYDPNGKPER ALRHTVYPKPEEWPKSEYSELDEDESQAPY DESQAPYDPNGKPERFYYNVESCGSLRPET K S E E R F 1 1 1 3 0 1 5 1 0 0 1 1 0 0 3 3 0 0 2 0 0 0 23 1 2654.1256 Q6FGR6;P19387 Q6FGR6 206 228 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes no 3 0.0024578 83.423 2 0.77078 0.9877 NaN 1 Median 0.77078 0.9877 NaN 1 0 Median NaN NaN NaN 0 0 Median 3972200 2138900 1833200 3972200 2138900 1833200 0 0 0 10653 1283 10937 38180;38181 57339;57340 57340 2 SEYSVHSSLASK DKESNMERRVITISRSEYSVHSSLASKVDV ISRSEYSVHSSLASKVDVEQVVMYCKEKLI R S E S K V 1 0 0 0 0 0 1 0 1 0 1 1 0 0 0 5 0 0 1 1 0 0 12 0 1293.6201 B4DYG2;O43683;A0JLU2 B4DYG2 197 208 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 yes no 2 1.0575E-07 136.02 3 0.75041 0.95725 1.3488 2 Median 0.75041 0.95725 1.3488 2 0 Median NaN NaN NaN 0 0 Median 9609600 5434200 4175400 9609600 5434200 4175400 0 0 0 10654 873 10938 38182;38183;38184 57341;57342;57343 57343 3 SFAANGIQAHPESSTGSDAR KASIQAASAESSGQKSFAANGIQAHPESST GIQAHPESSTGSDARTTAESQTTGKQSLIP K S F A R T 4 1 1 1 0 1 1 2 1 1 0 0 0 1 1 4 1 0 0 0 0 0 20 0 2001.914 Q5QJE6;J3KP30;B7Z854 Q5QJE6 25 44 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2;3 4.5561E-16 147.75 4 2 0.7798 1.0976 33.443 4 Median 0.96822 1.3037 2.0771 2 0 Median 0.55839 0.7785 26.32 2 0 Median 48769000 25460000 23309000 28641000 12783000 15858000 20128000 12677000 7450800 10655 1561 10939 38185;38186;38187;38188;38189;38190 57344;57345;57346;57347;57348;57349;57350 57344 7 SFAGAVSPQEEEEFRR IRVLGIQVDTDGSGRSFAGAVSPQEEEEFR FAGAVSPQEEEEFRRLAALPNVYEVISKSI R S F R R L 2 2 0 0 0 1 4 1 0 0 0 0 0 2 1 2 0 0 0 1 0 0 16 1 1837.8595 Q53FG5;B1AHB0;A8K521;P33992;B1AHB1;B4DQ39;B4DVK5 Q53FG5 309 324 MCM5 DNA helicase;DNA replication licensing factor MCM5 yes no 3 0.00019894 35.757 1 2 2.8461 3.9092 122.92 3 Median 0.37437 0.49842 NaN 1 0 Median 3.0527 4.1771 9.3767 2 0 Median 24380000 13064000 11316000 11094000 8277500 2816400 13286000 4786800 8499200 10656 612 10940 38191;38192;38193 57351;57352;57353;57354 57352 4 SFAGNLNTYK MDERRFQDAVRLRGRSFAGNLNTYKRLAIK RLRGRSFAGNLNTYKRLAIKLPDDQIPKTN R S F Y K R 1 0 2 0 0 0 0 1 0 0 1 1 0 1 0 1 1 0 1 0 0 0 10 0 1113.5455 Q01813;B1APP6;O14943;Q8WTZ9 Q01813 386 395 PFKP;PFK-P ATP-dependent 6-phosphofructokinase, platelet type yes no 2 0.022391 43.308 1 0.66812 0.85277 NaN 1 Median 0.66812 0.85277 NaN 1 0 Median NaN NaN NaN 0 0 Median 14010000 8729000 5280600 14010000 8729000 5280600 0 0 0 10657 1434 10941 38194 57355 57355 1 SFAIASLVETGHLAAFSLTSHLNDTFR RKGSEHQAIVQHLEKSFAIASLVETGHLAA LAAFSLTSHLNDTFRFDSEKLQVGQGVSLT K S F F R F 4 1 1 1 0 0 1 1 2 1 4 0 0 3 0 4 3 0 0 1 0 0 27 0 2904.477 Q14690 Q14690 938 964 PDCD11 Protein RRP5 homolog yes yes 3 0.0049443 45.558 2 1.0286 1.3787 NaN 1 Median 1.0286 1.3787 NaN 1 0 Median NaN NaN NaN 0 0 Median 7902500 4089500 3813000 7902500 4089500 3813000 0 0 0 10658 1494 10942 38195;38196 57356;57357 57357 2 SFANTLVDVCAYAGSGNVLK EAILAALEVVSEPFRSFANTLVDVCAYAGS LVDVCAYAGSGNVLKVQQLLHICSEHFDSK R S F L K V 3 0 2 1 1 0 0 2 0 0 2 1 0 1 0 2 1 0 1 3 0 0 20 0 2085.0201 Q59EG8;Q13200;B4DM22;Q13041;Q9NSM5;H7C1H2 Q59EG8 594 613 PSMD2;DKFZp564A2282 26S proteasome non-ATPase regulatory subunit 2 yes no 2 3.0755E-10 148.7 4 0.31897 0.41076 NaN 1 Median 0.31897 0.41076 NaN 1 0 Median NaN NaN NaN 0 0 Median 12015000 10607000 1408500 12015000 10607000 1408500 0 0 0 10659 1465 10943 38197;38198;38199;38200 57358;57359;57360;57361;57362 57361 5 SFCISTLANTK GPAAGSSDEPGKRRKSFCISTLANTKATSQ KRRKSFCISTLANTKATSQFKGYRRRSSLN K S F T K A 1 0 1 0 1 0 0 0 0 1 1 1 0 1 0 2 2 0 0 0 0 0 11 0 1240.6122 E9PEI0;Q69YH5;A8K8Z0;B3KRS8 E9PEI0 962 972 CDCA2 Cell division cycle-associated protein 2 yes no 2 0.017097 42.718 1 0.86454 1.0875 NaN 1 Median 0.86454 1.0875 NaN 1 0 Median NaN NaN NaN 0 0 Median 8873700 4590600 4283100 8873700 4590600 4283100 0 0 0 10660 1023 10944 38201 57363 57363 1 SFCSEGCVLLYK EKLLHEKLRFSGVEKSFCSEGCVLLYKQDF VEKSFCSEGCVLLYKQDFTKKLGLCCITCT K S F Y K Q 0 0 0 0 2 0 1 1 0 0 2 1 0 1 0 2 0 0 1 1 0 0 12 0 1461.6632 A6NHN7;A6NHB5;Q14202 A6NHN7 656 667 ZMYM3 Zinc finger MYM-type protein 3 yes no 2 0.010292 52.725 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1586500 1586500 0 1586500 1586500 0 0 0 0 10661 565 10945 38202 57364 57364 1 SFDFEIETK EISFVNFARGTTTTRSFDFEIETKQGTQYT GTTTTRSFDFEIETKQGTQYTFSSIEREEY R S F T K Q 0 0 0 1 0 0 2 0 0 1 0 1 0 2 0 1 1 0 0 0 0 0 9 0 1114.5183 A0A024R4Z6;Q08945 A0A024R4Z6 388 396 SSRP1 FACT complex subunit SSRP1 yes no 1;2 5.5961E-05 150.36 6 2 0.79187 1.0811 7.8309 8 Median 0.80589 1.057 5.2181 6 0 Median 0.76297 1.2058 3.6279 2 0 Median 888250000 508440000 379820000 583390000 328790000 254600000 304870000 179650000 125220000 10662 132 10946 38203;38204;38205;38206;38207;38208;38209;38210 57365;57366;57367;57368;57369;57370;57371;57372;57373;57374;57375;57376;57377 57366 13 SFDLIHSPHGELK EIQRVTNIKTSAKIKSFDLIHSPHGELKAV IKSFDLIHSPHGELKAVFLLQNNLVELYSL K S F L K A 0 0 0 1 0 0 1 1 2 1 2 1 0 1 1 2 0 0 0 0 0 0 13 0 1478.7518 Q5TDG3;Q9UNX4;B3KMW5 Q5TDG3 367 379 WDR3 WD repeat-containing protein 3 yes no 3 4.9295E-11 113.65 4 2 0.85929 1.0768 12.647 4 Median 0.85929 1.0768 12.647 4 0 Median NaN NaN NaN 0 0 Median 204630000 118890000 85745000 181530000 95785000 85745000 23101000 23101000 0 10663 1576 10947 38211;38212;38213;38214;38215;38216 57378;57379;57380;57381;57382;57383;57384;57385;57386 57383 9 SFDLLVK HQVPTENVQVHFTERSFDLLVKNLNGKSYS VQVHFTERSFDLLVKNLNGKSYSMIVNNLL R S F V K N 0 0 0 1 0 0 0 0 0 0 2 1 0 1 0 1 0 0 0 1 0 0 7 0 820.46945 Q6NVY0;A0A024R904;Q9HB71 Q6NVY0 112 118 CACYBP Calcyclin-binding protein yes no 2 0.045406 52.683 1 0.40486 0.51757 NaN 1 Median 0.40486 0.51757 NaN 1 0 Median NaN NaN NaN 0 0 Median 4098400 3197900 900500 4098400 3197900 900500 0 0 0 10664 210 10948 38217 57387 57387 1 SFDPSAREPPGSTAGLPQEPK SPLEHILQTLFGKKKSFDPSAREPPGSTAG REPPGSTAGLPQEPKTTAEDGVPAPPLLDP K S F P K T 2 1 0 1 0 1 2 2 0 0 1 1 0 1 5 3 1 0 0 0 0 0 21 1 2167.0546 Q9BTC0 Q9BTC0 1327 1347 DIDO1 Death-inducer obliterator 1 yes yes 3 4.4963E-05 62.167 4 1 0.73206 1.032 19.995 4 Median 0.84765 1.118 24.4 3 0 Median 0.63222 0.95257 NaN 1 0 Median 34247000 21928000 12319000 26554000 16830000 9723400 7693700 5097700 2596000 10665 1713 10949 38218;38219;38220;38221;38222 57388;57389;57390;57391;57392;57393;57394;57395;57396;57397 57393 10 SFDYNYR RSRSRSYERRRSRSRSFDYNYRRSYSPRNR ERRRSRSRSFDYNYRRSYSPRNRPTGRPRR R S F Y R R 0 1 1 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 2 0 0 0 7 0 963.40865 Q5JRI1;Q53GD7;A0A0S2Z504;O75494;B3KNY6 Q5JRI1 133 139 SRSF10 Serine/arginine-rich splicing factor 10 yes no 2 0.023393 71.715 2 0.34491 0.46001 1.8199 2 Median 0.34491 0.46001 1.8199 2 0 Median NaN NaN NaN 0 0 Median 26700000 17783000 8916700 26700000 17783000 8916700 0 0 0 10666 474 10950 38223;38224 57398;57399 57398 2 SFEAPATINSASLHPEK RSIAFHSAVSLDPIKSFEAPATINSASLHP EAPATINSASLHPEKEFLVAGGEDFKLYKY K S F E K E 3 0 1 0 0 0 2 0 1 1 1 1 0 1 2 3 1 0 0 0 0 0 17 0 1797.8897 Q9Y3F4;B0AZV0 Q9Y3F4 219 235 STRAP Serine-threonine kinase receptor-associated protein yes no 2;3 0.00026742 70.783 3 1 0.37093 0.47654 10.858 2 Median 0.37093 0.47654 10.858 2 0 Median NaN NaN NaN 0 0 Median 23815000 15369000 8445500 21098000 15369000 5729100 2716400 0 2716400 10667 1818 10951 38225;38226;38227;38228 57400;57401;57402;57403 57403 4 SFEQISANITK QGGSKLGTKRTLPKKSFEQISANITKFNIQ LPKKSFEQISANITKFNIQGLVIIGGFEAY K S F T K F 1 0 1 0 0 1 1 0 0 2 0 1 0 1 0 2 1 0 0 0 0 0 11 0 1236.635 A0A024R0Y5;P08237;A0A0S2Z4A1;Q96I60;A0A0S2Z4I1;B4E162;A0A0S2Z4A8;Q7KYX9;F8VP00 A0A024R0Y5 477 487 PFKM ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type yes no 2 0.0001635 87.298 1 0.64117 0.81476 NaN 1 Median 0.64117 0.81476 NaN 1 0 Median NaN NaN NaN 0 0 Median 15805000 8206700 7598700 15805000 8206700 7598700 0 0 0 10668 44 10952 38229 57404;57405 57405 2 SFFSVESGTK VFRQMDFPGESSNNRSFFSVESGTKMSGLH SSNNRSFFSVESGTKMSGLHISGGQSVLEP R S F T K M 0 0 0 0 0 0 1 1 0 0 0 1 0 2 0 3 1 0 0 1 0 0 10 0 1087.5186 Q14966;D6W5H1;A8K583;A0A096LPH6;B4DF54 Q14966 283 292 ZNF638 Zinc finger protein 638 yes no 2 0.042679 39.305 1 0.94563 1.2534 NaN 1 Median NaN NaN NaN 0 0 Median 0.94563 1.2534 NaN 1 0 Median 2974400 1485800 1488600 0 0 0 2974400 1485800 1488600 10669 1498 10953 38230 57406 57406 1 SFGGEVSWDK LNREVPREALAFIIRSFGGEVSWDKSLCIG AFIIRSFGGEVSWDKSLCIGATYDVTDSRI R S F D K S 0 0 0 1 0 0 1 2 0 0 0 1 0 1 0 2 0 1 0 1 0 0 10 0 1110.4982 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6 B5MCF9 332 341 PES1 Pescadillo homolog yes no 2 0.026545 42.395 1 0.52341 0.78298 NaN 1 Median NaN NaN NaN 0 0 Median 0.52341 0.78298 NaN 1 0 Median 7670700 4191900 3478900 0 0 0 7670700 4191900 3478900 10670 735 10954 38231 57407 57407 1 SFGSTCQLSEK TFDSQTKENMTLQPKSFGSTCQLSEKFIKA LQPKSFGSTCQLSEKFIKAAIGCGIVESIL K S F E K F 0 0 0 0 1 1 1 1 0 0 1 1 0 1 0 3 1 0 0 0 0 0 11 0 1242.5551 P11388 P11388 387 397 TOP2A DNA topoisomerase 2-alpha yes yes 2 4.9553E-09 156.83 5 2 0.87866 1.1823 14.834 6 Plateau 0.89287 1.1686 2.2919 4 0 Median 0.55888 0.88376 0.55683 2 0 Median 1605500000 872940000 732580000 1344800000 708230000 636570000 260720000 164710000 96008000 10671 1256 10955 38232;38233;38234;38235;38236;38237;38238 57408;57409;57410;57411;57412;57413;57414;57415;57416;57417;57418;57419;57420 57409 13 SFHTYDVQK SALKRRFYVTTCVGKSFHTYDVQKLSLVAV TTCVGKSFHTYDVQKLSLVAVSNSVPQDIC K S F Q K L 0 0 0 1 0 1 0 0 1 0 0 1 0 1 0 1 1 0 1 1 0 0 9 0 1123.5298 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 49 57 WDR36 WD repeat-containing protein 36 yes no 2 1.2147E-09 190.26 4 2 0.83206 1.0542 8.2571 6 Median 0.87785 1.1113 6.059 4 0 Median 0.64195 0.96555 6.304 2 0 Median 168940000 90880000 78061000 143940000 75940000 67996000 25005000 14940000 10065000 10672 404 10956 38239;38240;38241;38242;38243;38244 57421;57422;57423;57424;57425;57426;57427;57428;57429;57430;57431 57424 11 SFIAAPCQIITNTSTLLK KEKRNKNLAEIGKRRSFIAAPCQIITNTST AAPCQIITNTSTLLKNYQDNNKMLVLALEN R S F L K N 2 0 1 0 1 1 0 0 0 3 2 1 0 1 1 2 3 0 0 0 0 0 18 0 1977.0605 B5BUA4;Q5FBB7;A0A024R2J4;F8WB17 B5BUA4 38 55 SGOL1 Shugoshin-like 1 yes no 2 1.1774E-23 155.39 3 1.0271 1.3019 9.6392 3 Plateau 1.0271 1.3019 9.6392 3 0 Plateau NaN NaN NaN 0 0 Median 16744000 8546400 8197900 16744000 8546400 8197900 0 0 0 10673 895 10957 38245;38246;38247 57432;57433;57434;57435;57436;57437 57432 6 SFIAEMTIYIK QGEYKYTQVGPDHNRSFIAEMTIYIKQLGR DHNRSFIAEMTIYIKQLGRRIFAREHGSNK R S F I K Q 1 0 0 0 0 0 1 0 0 3 0 1 1 1 0 1 1 0 1 0 0 0 11 0 1314.6894 Q08211;Q58F26;Q6PJK6 Q08211 210 220 DHX9 ATP-dependent RNA helicase A yes no 2 0.0011461 72.643 1 0.6596 0.83296 NaN 1 Median 0.6596 0.83296 NaN 1 0 Median NaN NaN NaN 0 0 Median 8946000 5467400 3478600 8946000 5467400 3478600 0 0 0 10674 1448 10958 38248 57438;57439 57439 2 SFIPSLVEK DVMIHPVTNRPADKRSFIPSLVEKEKVSRM RPADKRSFIPSLVEKEKVSRMVHAIKMGWI R S F E K E 0 0 0 0 0 0 1 0 0 1 1 1 0 1 1 2 0 0 0 1 0 0 9 0 1018.5699 B2RDN4;Q14137;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9;A0A075B729 B2RDN4 245 253 BOP1 Ribosome biogenesis protein BOP1 yes no 2 0.032955 43.185 1 0.91797 1.1249 NaN 1 Median 0.91797 1.1249 NaN 1 0 Median NaN NaN NaN 0 0 Median 23124000 11934000 11190000 23124000 11934000 11190000 0 0 0 10675 738 10959 38249 57440 57440 1 SFISPIPSK DHSSQNPLIMRRRVRSFISPIPSKRQSQDV MRRRVRSFISPIPSKRQSQDVKNSSTEDKG R S F S K R 0 0 0 0 0 0 0 0 0 2 0 1 0 1 2 3 0 0 0 0 0 0 9 0 974.54368 W5ZR30;Q9UGU0 W5ZR30 1259 1267 TCF20 Transcription factor 20 yes no 2 0.052826 39.022 1 1.3243 1.9341 NaN 1 Median NaN NaN NaN 0 0 Median 1.3243 1.9341 NaN 1 0 Median 5507900 2452700 3055200 0 0 0 5507900 2452700 3055200 10676 1783 10960 38250 57441 57441 1 SFITTDVNPYYDSFVR IQDLKRMGLKVDWRRSFITTDVNPYYDSFV FITTDVNPYYDSFVRWQFLTLRERNKIKFG R S F V R W 0 1 1 2 0 0 0 0 0 1 0 0 0 2 1 2 2 0 2 2 0 0 16 0 1922.905 B4E266;B4DER1;B2RCM2;Q9P2J5;Q6NVI4 B4E266 158 173 LARS Leucine--tRNA ligase, cytoplasmic yes no 2 5.1856E-25 173.11 4 0.52744 0.74369 5.0484 3 Median 0.52744 0.74369 5.0484 3 0 Median NaN NaN NaN 0 0 Median 25898000 18120000 7777600 25898000 18120000 7777600 0 0 0 10677 732 10961 38251;38252;38253;38254 57442;57443;57444;57445 57443 4 SFKPDFGAESIYGGFLLGVR SNSIVKIFKNFKEKKSFKPDFGAESIYGGF FGAESIYGGFLLGVRSVNGLAFYDWDNTEL K S F V R S 1 1 0 1 0 0 1 4 0 1 2 1 0 3 1 2 0 0 1 1 0 0 20 1 2159.1051 P35606;H0Y938 P35606 423 442 COPB2 Coatomer subunit beta yes no 3 6.7121E-07 60.134 3 0.45689 0.61052 10.931 3 Median 0.45689 0.61052 10.931 3 0 Median NaN NaN NaN 0 0 Median 16939000 10605000 6334300 16939000 10605000 6334300 0 0 0 10678 1321 10962 38255;38256;38257 57446;57447;57448;57449 57447 3 SFLAAANEEILESIR DITEDLTNKARGSNKSFLAAANEEILESIR SFLAAANEEILESIRAKKGDIDNVKSPEET K S F I R A 3 1 1 0 0 0 3 0 0 2 2 0 0 1 0 2 0 0 0 0 0 0 15 0 1661.8625 E7ETD6;Q12830;F5GXF5;A0A0A0MR81;B4DDK2;B4DM40 E7ETD6 408 422 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 2.2495E-10 146.07 2 2 0.83831 1.1904 20.95 3 Plateau 0.61242 0.86061 NaN 1 0 Median 0.83831 1.1904 13.273 2 0 Median 32930000 20786000 12145000 9684700 8252700 1432000 23246000 12533000 10713000 10679 1015 10963 38258;38259;38260;38261 57450;57451;57452;57453;57454;57455;57456 57453 7 SFLDELK RCLIGIIIKSSNVVRSFLDELKACVASNDI IKSSNVVRSFLDELKACVASNDIEGIVCLT R S F L K A 0 0 0 1 0 0 1 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 7 0 850.44363 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 1061 1067 NCAPG2 Condensin-2 complex subunit G2 yes no 2 0.049081 79.469 1 0.90993 1.1453 NaN 1 Median 0.90993 1.1453 NaN 1 0 Median NaN NaN NaN 0 0 Median 6050400 3456200 2594200 6050400 3456200 2594200 0 0 0 10680 1621 10964 38262 57457 57457 1 SFLEFAEDVIQVPR FHIYGEDQDAVKKARSFLEFAEDVIQVPRN RSFLEFAEDVIQVPRNLVGKVIGKNGKLIQ R S F P R N 1 1 0 1 0 1 2 0 0 1 1 0 0 2 1 1 0 0 0 2 0 0 14 0 1648.8461 X5DQX7;Q06787;W5ZQ92;R9WQY1;A8MQB8;G3V0J0;X5D907;R9WNI0;Q59GC1;R9WPL0;A0A087WXI3;A0A0K0MJ24;Q8IXW7;A0A087WWR6 X5DQX7 277 290 FMR1 Fragile X mental retardation protein 1 yes no 2 2.2463E-22 186.74 4 0.93803 1.2496 10.759 4 Median 0.93803 1.2496 10.759 4 0 Median NaN NaN NaN 0 0 Median 78238000 40878000 37360000 78238000 40878000 37360000 0 0 0 10681 1447 10965 38263;38264;38265;38266 57458;57459;57460;57461;57462;57463;57464;57465;57466 57463 9 SFLLDLLNATGK NITQKVVWVEESDKRSFLLDLLNATGKDSL DKRSFLLDLLNATGKDSLTLVFVETKKGAD R S F G K D 1 0 1 1 0 0 0 1 0 0 4 1 0 1 0 1 1 0 0 0 0 0 12 0 1290.7184 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1 A0A0D9SFB3 429 440 DDX3X ATP-dependent RNA helicase DDX3X yes no 2 1.9547E-19 185.33 4 0.47061 0.59221 9.1933 2 Median 0.47061 0.59221 9.1933 2 0 Median NaN NaN NaN 0 0 Median 42696000 29310000 13386000 42696000 29310000 13386000 0 0 0 10682 432 10966 38267;38268;38269;38270 57467;57468;57469;57470;57471 57467 5 SFLVASVLPGPDGNINSPTR EVLGVIGDCPELVQRSFLVASVLPGPDGNI SVLPGPDGNINSPTRNADMQEELIASLEEQ R S F T R N 1 1 2 1 0 0 0 2 0 1 2 0 0 1 3 3 1 0 0 2 0 0 20 0 2040.064 Q7Z3K3;B4DSK8 Q7Z3K3 1322 1341 POGZ Pogo transposable element with ZNF domain yes no 2 3.8099E-25 164.2 4 0.90226 1.2197 13.531 3 Plateau 0.90226 1.2197 13.531 3 0 Plateau NaN NaN NaN 0 0 Median 23863000 14716000 9146800 23863000 14716000 9146800 0 0 0 10683 1614 10967 38271;38272;38273;38274 57472;57473;57474;57475;57476;57477;57478 57472 7 SFLYSINQTICLR KRQRLEINCQDPSIKSFLYSINQTICLRLD IKSFLYSINQTICLRLDSIEAKLQALEATC K S F L R L 0 1 1 0 1 1 0 0 0 2 2 0 0 1 0 2 1 0 1 0 0 0 13 0 1613.8236 A0A0S2Z696;B3KM38;A0A0S2Z5C2;A0A0S2Z5G4;B4DE54;A0A0S2Z5M2;C9JYB6;C9JGM9;C9JF73;C9JTM8;E9PJI6;C9J811;D3DUN6 A0A0S2Z696 55 67 BANP yes no 2 0.014695 97.813 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 708350 708350 0 708350 708350 0 0 0 0 10684 477 10968 38275 57479;57480 57479 2 SFPDFPTPGVVFR ______________________________ IRSFPDFPTPGVVFRDISPVLKDPASFRAA R S F F R D 0 1 0 1 0 0 0 1 0 0 0 0 0 3 3 1 1 0 0 2 0 0 13 0 1464.7402 H3BQZ9;P07741;H3BQB1;H3BSW3;H3BQF1;Q12898 H3BQZ9 15 27 APRT Adenine phosphoribosyltransferase yes no 2 8.2836E-13 136.52 4 1 0.22893 0.30997 5.708 2 Median 0.22893 0.30997 5.708 2 0 Median NaN NaN NaN 0 0 Median 45036000 31281000 13755000 35433000 31281000 4151300 9603500 0 9603500 10685 1106 10969 38276;38277;38278;38279;38280 57481;57482;57483;57484;57485;57486;57487 57483 7 SFPGFQAFCETQGDR SGGLPQFGDEYDFYRSFPGFQAFCETQGDR SFPGFQAFCETQGDRLLQCMSRVMQYHGCR R S F D R L 1 1 0 1 1 2 1 2 0 0 0 0 0 3 1 1 1 0 0 0 0 0 15 0 1745.7468 Q01780;B4DKG8;B4DFE4;Q59G73;K7EJ37 Q01780 65 79 EXOSC10 Exosome component 10 yes no 2 3.8309E-07 124.21 4 0.69632 0.98582 3.1443 4 Median 0.69632 0.98582 3.1443 4 0 Median NaN NaN NaN 0 0 Median 15075000 9695900 5379500 15075000 9695900 5379500 0 0 0 10686 1433 10970 38281;38282;38283;38284 57488;57489;57490;57491;57492 57490 5 SFPHDVQFFDLR LVVKLTERVGLYRERSFPHDVQFFDLRLLF RERSFPHDVQFFDLRLLFLLT_________ R S F L R L 0 1 0 2 0 1 0 0 1 0 1 0 0 3 1 1 0 0 0 1 0 0 12 0 1506.7256 E9PI04;Q9NPQ8;E9PSI0;H0YEN0 E9PI04 131 142 RIC8A Synembryn-A yes no 3 0.028459 65.563 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 278110 278110 0 278110 278110 0 0 0 0 10687 1031 10971 38285 57493 57493 1 SFQGPVLIGSSHGGVNIEDVAAETPEAIIK ______________________________ NIEDVAAETPEAIIKEPIDIEEGIKKEQAL R S F I K E 3 0 1 1 0 1 3 4 1 4 1 1 0 1 2 3 1 0 0 3 0 0 30 0 3034.5611 B7Z9S6;B4DY87;Q7Z503;B7ZAF6;E5KS55 B7Z9S6 4 33 SUCLA2 Succinyl-CoA ligase subunit beta yes no 3 9.0865E-08 75.942 3 0.27015 0.34041 43.619 3 Plateau 0.27015 0.34041 43.619 3 0 Plateau NaN NaN NaN 0 0 Median 13130000 10464000 2666900 13130000 10464000 2666900 0 0 0 10688 872 10972 38286;38287;38288 57494;57495;57496 57495 3 SFQQSSLSR ______________________________ ______________________________ K S F S R D 0 1 0 0 0 2 0 0 0 0 1 0 0 1 0 4 0 0 0 0 0 0 9 0 1038.5094 A0A0R4J2E8;A8MXP9;P43243;D6REM6;Q68D11;D6R991;D6R8Z5;Q68E03;D6RB45;A0A1B0GX04;D6R9F3;D6RBS2;D6RCM3;D6REK4 A0A0R4J2E8 4 12 MATR3;DKFZp686K23100;DKFZp686L22104 Matrin-3 yes no 2 0.0012536 101.72 2 0.32615 0.43526 26.509 2 Median 0.32615 0.43526 26.509 2 0 Median NaN NaN NaN 0 0 Median 29377000 21416000 7960900 29377000 21416000 7960900 0 0 0 10689 445 10973 38289;38290 57497;57498 57498 2 SFQSDDSSLR KLQHTYLCEEKENNKSFQSDDSSLRASVQG KENNKSFQSDDSSLRASVQGVPLESSNNDI K S F L R A 0 1 0 2 0 1 0 0 0 0 1 0 0 1 0 4 0 0 0 0 0 0 10 0 1140.5047 Q6P0N0;G5E9K5 Q6P0N0 172 181 MIS18BP1 Mis18-binding protein 1 yes no 2 0.0012661 92.051 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10690 1588 10974 38291;38292;38293 57499;57500;57501 57500 3 SFSTASAITPSVSR MSRQSSVSFRSGGSRSFSTASAITPSVSRT RSFSTASAITPSVSRTSFTSVSRSGGGGGG R S F S R T 2 1 0 0 0 0 0 0 0 1 0 0 0 1 1 5 2 0 0 1 0 0 14 0 1409.7151 CON__P13647;P13647;B4E1T1;F8VV57;F8VU69 CON__P13647 16 29 KRT5 Keratin, type II cytoskeletal 5 no no 2 0.00027078 70.488 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22233000 22233000 0 1396700 1396700 0 20836000 20836000 0 + 10691 961 10975 38294;38295;38296 57502;57503;57504 57503 3 SFSTLFLETVK RIRDSEYEIQRQAKKSFSTLFLETVKRKSE QAKKSFSTLFLETVKRKSESSPIVRHAATA K S F V K R 0 0 0 0 0 0 1 0 0 0 2 1 0 2 0 2 2 0 0 1 0 0 11 0 1270.6809 Q03188;H0Y8J2 Q03188 261 271 CENPC Centromere protein C yes no 2 0.00015329 134.25 4 1 0.73432 0.98076 11.479 5 Median 0.76646 0.96658 12.925 4 0 Median 0.65069 0.98076 NaN 1 0 Median 55799000 33058000 22741000 38087000 21443000 16644000 17712000 11615000 6097000 10692 1439 10976 38297;38298;38299;38300;38301 57505;57506;57507;57508;57509;57510;57511 57508 7 SFSYQLEALK KKVLLQKIEFEPASKSFSYQLEALKSKYVL EPASKSFSYQLEALKSKYVLLNPKTEGASR K S F L K S 1 0 0 0 0 1 1 0 0 0 2 1 0 1 0 2 0 0 1 0 0 0 10 0 1184.6077 A0A024R8V6;Q9P275;A0A075B784;Q9H9C5;E9PEW0;K7ERC1;K7ELT3;K7EQS0;K7EPT1;K7ELR5;Q8IXW9 A0A024R8V6 48 57 USP36;DUB1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 2 0.017891 47.198 1 1.0228 1.2978 NaN 1 Median 1.0228 1.2978 NaN 1 0 Median NaN NaN NaN 0 0 Median 7117100 4087700 3029400 7117100 4087700 3029400 0 0 0 10693 205 10977 38302 57512 57512 1 SFTASVDRK KYTLLLGQDENSVIKSFTASVDRKFISLMS ENSVIKSFTASVDRKFISLMSLSSDGCIYE K S F R K F 1 1 0 1 0 0 0 0 0 0 0 1 0 1 0 2 1 0 0 1 0 0 9 1 1009.5193 Q9H8H0;J3QR28 Q9H8H0 206 214 NOL11 Nucleolar protein 11 yes no 2 1.0865E-07 106.91 3 2 0.66161 0.97565 13.672 4 Median 0.81548 1.0796 8.6526 2 0 Median 0.54419 0.88156 8.6791 2 0 Median 76554000 44487000 32068000 43867000 23654000 20213000 32687000 20832000 11855000 10694 1743 10978 38303;38304;38305;38306;38307 57513;57514;57515;57516;57517 57515 5 SFTGNFVIDENILK DIIADAAYSIFQKPKSFTGNFVIDENILKE KSFTGNFVIDENILKEEGIENFDVYAIKPG K S F L K E 0 0 2 1 0 0 1 1 0 2 1 1 0 2 0 1 1 0 0 1 0 0 14 0 1595.8195 B2R923;A0A024R159;Q6YN16;B4DWC7;B4E136 B2R923 164 177 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 2 0.00019949 86.313 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9028800 9028800 0 9028800 9028800 0 0 0 0 10695 51 10979 38308;38309;38310 57518;57519;57520 57520 3 SFTPDHVVYAR ERREKLKTSRDKLRKSFTPDHVVYARSKTA KLRKSFTPDHVVYARSKTAVYKVPPFTFHV K S F A R S 1 1 0 1 0 0 0 0 1 0 0 0 0 1 1 1 1 0 1 2 0 0 11 0 1290.6357 B4DPZ5;B4DNU9;Q6NZI2;B3KRY5 B4DPZ5 273 283 PTRF Polymerase I and transcript release factor yes no 2;3 0.019333 80.706 2 2 0.98958 1.3522 30.489 4 Median 0.78438 1.0436 18.939 2 0 Median 1.2212 1.6793 12.933 2 0 Median 41391000 21817000 19574000 27822000 16149000 11673000 13569000 5668200 7900800 10696 842 10980 38311;38312;38313;38314 57521;57522;57523;57524 57522 4 SFVDAEVDVTR IKTDLDDDITALKQRSFVDAEVDVTRDIVS LKQRSFVDAEVDVTRDIVSRERVWRTRTTI R S F T R D 1 1 0 2 0 0 1 0 0 0 0 0 0 1 0 1 1 0 0 3 0 0 11 0 1236.5986 Q6P1J9;A0A1B0GUB2;B4DV47;A0A0S2Z5M9;A0A0S2Z5N1 Q6P1J9 212 222 CDC73 Parafibromin yes no 2 0.0010096 74.162 1 1 0.67809 0.96149 6.6454 2 Median 0.69332 0.91735 NaN 1 0 Median 0.66319 1.0077 NaN 1 0 Median 26789000 11831000 14958000 9457000 5389900 4067000 17332000 6441000 10891000 10697 1590 10981 38315;38316 57525;57526;57527 57526 3 SFVEFILEPLYK TRKFTKKAPTSSSQRSFVEFILEPLYKILA SQRSFVEFILEPLYKILAQVVGDVDTSLPR R S F Y K I 0 0 0 0 0 0 2 0 0 1 2 1 0 2 1 1 0 0 1 1 0 0 12 0 1483.7963 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 319 330 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 1.7366E-07 100.48 3 0.64852 0.81007 42.491 3 Median 0.64852 0.81007 42.491 3 0 Median NaN NaN NaN 0 0 Median 78950000 48061000 30889000 78950000 48061000 30889000 0 0 0 10698 654 10982 38317;38318;38319 57528;57529;57530;57531 57529 4 SFVELSGAER ______________________________ GALERSFVELSGAERERPRHFREFTVCSIG R S F E R E 1 1 0 0 0 0 2 1 0 0 1 0 0 1 0 2 0 0 0 1 0 0 10 0 1093.5404 G3V198;Q12769;E9PR16;E9PSI3 G3V198 9 18 NUP160 Nuclear pore complex protein Nup160 yes no 2 0.016689 56.258 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2088000 0 2088000 0 0 0 2088000 0 2088000 10699 1077 10983 38320 57532 57532 1 SFYGSTLFLCR SLFSRVSLRLVGLKKSFYGSTLFLCRRPTP GLKKSFYGSTLFLCRRPTPQDSPIFLPVDD K S F C R R 0 1 0 0 1 0 0 1 0 0 2 0 0 2 0 2 1 0 1 0 0 0 11 0 1349.6438 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1392 1402 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.012337 55.064 1 1.0154 1.3394 NaN 1 Median 1.0154 1.3394 NaN 1 0 Median NaN NaN NaN 0 0 Median 6708700 1272400 5436400 6708700 1272400 5436400 0 0 0 10700 486 10984 38321 57533;57534 57533 2 SFYPEEVSSMVLTK AGRPKVQVEYKGETKSFYPEEVSSMVLTKM KSFYPEEVSSMVLTKMKEIAEAYLGKTVTN K S F T K M 0 0 0 0 0 0 2 0 0 0 1 1 1 1 1 3 1 0 1 2 0 0 14 0 1615.7804 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;Q53HF2;E9PN89;B4DTX2;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PI65;E9PN25 V9HW22 113 126 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 2 3.7518E-05 84.169 2 3 1.2446 1.951 0.92528 3 Median NaN NaN NaN 0 0 Median 1.2446 1.951 0.92528 3 0 Median 91436000 42047000 49389000 7504800 5544900 1959800 83931000 36502000 47429000 10701 1253 10985;10986 38322;38323;38324;38325;38326 57535;57536;57537;57538;57539;57540;57541 57538 497 7 SFYQFQHYR LLRVEEINPEYMLEKSFYQFQHYRAIPGVV EYMLEKSFYQFQHYRAIPGVVEKVKNSEEQ K S F Y R A 0 1 0 0 0 2 0 0 1 0 0 0 0 2 0 1 0 0 2 0 0 0 9 0 1274.5833 P42285;A8K6I4;B4E3M6 P42285 588 596 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 0.015788 55.531 1 0.29786 0.39369 NaN 1 Median NaN NaN NaN 0 0 Median 0.29786 0.39369 NaN 1 0 Median 2453900 1966500 487330 0 0 0 2453900 1966500 487330 10702 1336 10987 38327 57542 57542 1 SGAAHLCDSQETNCSTAGHSK HSASSDSTKAPQTPRSGAAHLCDSQETNCS CDSQETNCSTAGHSKTPPSGADSKTVKLKS R S G S K T 3 0 1 1 2 1 1 2 2 0 1 1 0 0 0 4 2 0 0 0 0 0 21 0 2216.9175 A0A024R8V6;Q9P275;A0A075B784;B3KMW2 A0A024R8V6 632 652 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 3 4.7725E-40 178.23 4 1.1096 1.4383 4.2454 3 Median 1.1096 1.4383 4.2454 3 0 Median NaN NaN NaN 0 0 Median 11912000 6142200 5770200 11912000 6142200 5770200 0 0 0 10703 205 10988 38328;38329;38330;38331 57543;57544;57545;57546;57547 57543 5 SGAHSFISGLPQGYDTEVDEAGSQLSGGQR TQKPTMEEITAAAVKSGAHSFISGLPQGYD TEVDEAGSQLSGGQRQAVALARALIRKPCV K S G Q R Q 2 1 0 2 0 3 2 6 1 1 2 0 0 1 1 5 1 0 1 1 0 0 30 0 3049.4013 A0A0S2Z4R8;B7Z7P4;X5CKB3;B2R9F3;A0A140T9T7;A0A0S2Z5A6;Q03518 A0A0S2Z4R8 194 223 TAP1 Antigen peptide transporter 1 yes no 3 9.7398E-17 110.07 3 0.67349 0.9123 33.072 3 Plateau 0.67349 0.9123 33.072 3 0 Plateau NaN NaN NaN 0 0 Median 13476000 7714400 5761200 13476000 7714400 5761200 0 0 0 10704 469 10989 38332;38333;38334 57548;57549;57550;57551;57552;57553;57554;57555 57550 8 SGALDVLQMKEEDVLK ______________________________ GALDVLQMKEEDVLKFLAAGTHLGGTNLDF M S G L K F 1 0 0 2 0 1 2 1 0 0 3 2 1 0 0 1 0 0 0 2 0 0 16 1 1773.9183 C9J9K3;A0A024R2P0;A0A0C4DG17;P08865;Q96RS2;F8WD59 C9J9K3 2 17 RPSA 40S ribosomal protein SA yes no 2 2.3714E-23 175.21 5 3 2.2985 3.2051 36.882 2 Median 2.0494 2.4693 NaN 1 0 Median 2.5779 4.1601 NaN 1 0 Median 133100000 7302500 125800000 15793000 889090 14904000 117310000 6413500 110890000 10705 90 10990;10991 38335;38336;38337;38338;38339;38340;38341;38342 57556;57557;57558;57559;57560;57561;57562;57563 57557 52 6 SGALLACGIVNSGVR TQIDKYLYSSEDYIKSGALLACGIVNSGVR SGALLACGIVNSGVRNECDPALALLSDYVL K S G V R N 2 1 1 0 1 0 0 3 0 1 2 0 0 0 0 2 0 0 0 2 0 0 15 0 1472.7769 Q59EG8;Q13200;B4DM22;Q13041;Q9NSM5 Q59EG8 447 461 PSMD2;DKFZp564A2282 26S proteasome non-ATPase regulatory subunit 2 yes no 2 0.00010593 99.732 1 0.2928 0.40667 NaN 1 Median 0.2928 0.40667 NaN 1 0 Median NaN NaN NaN 0 0 Median 5181500 3790400 1391100 5181500 3790400 1391100 0 0 0 10706 1465 10992 38343 57564 57564 1 SGALPQQYPASGENK ETKGFLQGAPAGGEKSGALPQQYPASGENK SGALPQQYPASGENKSKDESQSLLR_____ K S G N K S 2 0 1 0 0 2 1 2 0 0 1 1 0 0 2 2 0 0 1 0 0 0 15 0 1545.7423 H0YC29;E5RJ97;E5RFF3;Q9UHF7 H0YC29 667 681 TRPS1 Zinc finger transcription factor Trps1 yes no 2 0.013555 31.228 1 0.59287 0.74687 NaN 1 Median 0.59287 0.74687 NaN 1 0 Median NaN NaN NaN 0 0 Median 2492300 1686300 805930 2492300 1686300 805930 0 0 0 10707 1004 10993 38344 57565 57565 1 SGAPPPSGSAVSTAPQPK QYIRRLAAEATEWQRSGAPPPSGSAVSTAP PPPSGSAVSTAPQPKPADKMSKNKKKKLKK R S G P K P 3 0 0 0 0 1 0 2 0 0 0 1 0 0 5 4 1 0 0 1 0 0 18 0 1634.8264 Q96SB4;A0A024RCU9;A8K8B2;H3BLV9 Q96SB4 241 258 SRPK1 SRSF protein kinase 1 yes no 2 1.4805E-08 90.759 3 0.7139 0.91048 22.9 3 Median 0.7139 0.91048 22.9 3 0 Median NaN NaN NaN 0 0 Median 14992000 8995100 5996500 14992000 8995100 5996500 0 0 0 10708 1699 10994 38345;38346;38347 57566;57567;57568;57569;57570;57571 57571 6 SGAQASSTPLSPTR ______________________________ RSGAQASSTPLSPTRITRLQEKEDLQELND R S G T R I 2 1 0 0 0 1 0 1 0 0 1 0 0 0 2 4 2 0 0 0 0 0 14 0 1358.679 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;W5X314 P02545 12 25 LMNA Prelamin-A/C;Lamin-A/C yes no 2 4.8614E-28 181.66 4 2 0.68792 0.95327 69.103 6 Median 0.67275 0.92566 7.5171 4 0 Median 2.1077 3.4269 4.573 2 0 Median 446520000 229300000 217230000 308380000 183410000 124970000 138140000 45889000 92255000 10709 1229 10995 38348;38349;38350;38351;38352;38353 57572;57573;57574;57575;57576;57577;57578;57579;57580;57581;57582 57576 11 SGASAAPAASAAAALAPSATR RSRSSAAAKLRGQKRSGASAAPAASAAAAL PAASAAAALAPSATRTRRSASQAGSKSQAV R S G T R T 11 1 0 0 0 0 0 1 0 0 1 0 0 0 2 4 1 0 0 0 0 0 21 0 1768.9068 A0A0M3HER2 A0A0M3HER2 18 38 yes yes 2 2.196E-21 155.56 2 1 0.88224 1.2836 28.814 2 Median 1.178 1.5737 NaN 1 0 Median 0.66076 1.047 NaN 1 0 Median 38335000 20115000 18220000 9431500 3171500 6260100 28903000 16944000 11959000 10710 444 10996 38354;38355;38356 57583;57584;57585;57586;57587 57583 5 SGASEANLIVAK RSQHDILQMICSKRRSGASEANLIVAKSWA KRRSGASEANLIVAKSWADVVKLGAKQTQT R S G A K S 3 0 1 0 0 0 1 1 0 1 1 1 0 0 0 2 0 0 0 1 0 0 12 0 1158.6245 P46013;Q70L73 P46013 648 659 MKI67 Antigen KI-67 no no 2 9.9431E-55 201.84 4 2 0.92676 1.2122 16.395 6 Median 0.89221 1.1747 3.6094 4 0 Median 1.0225 1.6166 1.6213 2 0 Median 755220000 384710000 370510000 492210000 257450000 234750000 263010000 127260000 135760000 10711 1342;1604 10997 38357;38358;38359;38360;38361;38362 57588;57589;57590;57591;57592;57593;57594;57595;57596;57597;57598 57595 11 SGASGASAAPAASAAAALAPSATR RSRSSAAAKLRGQKRSGASGASAAPAASAA PAASAAAALAPSATRTRRSASQAGSKSQAV R S G T R T 12 1 0 0 0 0 0 2 0 0 1 0 0 0 2 5 1 0 0 0 0 0 24 0 1983.9974 Q7Z7K6 Q7Z7K6 18 41 CENPV Centromere protein V yes yes 2 6.1912E-140 262.82 4 2 0.99585 1.3514 28.981 6 Median 1.0466 1.415 5.6544 4 0 Median 0.49779 0.81361 2.8393 2 0 Median 237900000 149990000 87907000 46503000 21570000 24933000 191390000 128420000 62973000 10712 1619 10998 38363;38364;38365;38366;38367;38368 57599;57600;57601;57602;57603;57604;57605;57606;57607 57601 9 SGASVVAIR MDAILTEAIKACFQKSGASVVAIRKYIIHK KACFQKSGASVVAIRKYIIHKYPSLELERR K S G I R K 2 1 0 0 0 0 0 1 0 1 0 0 0 0 0 2 0 0 0 2 0 0 9 0 858.49232 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 176 184 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 1.2458E-11 161.9 2 2 0.50057 0.74747 6.8796 4 Median 0.58233 0.79817 3.8294 2 0 Median 0.44192 0.71342 1.1412 2 0 Median 266190000 176010000 90184000 158190000 103400000 54798000 108000000 72610000 35386000 10713 1565 10999 38369;38370;38371;38372 57608;57609;57610;57611;57612;57613;57614 57611 7 SGASVVAIRK MDAILTEAIKACFQKSGASVVAIRKYIIHK ACFQKSGASVVAIRKYIIHKYPSLELERRG K S G R K Y 2 1 0 0 0 0 0 1 0 1 0 1 0 0 0 2 0 0 0 2 0 0 10 1 986.58728 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 176 185 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 2.2582E-05 107 4 1 0.62469 0.82388 8.3805 5 Median 0.628 0.82404 2.255 4 0 Median 0.38844 0.68726 NaN 1 0 Median 226920000 146680000 80241000 191480000 121410000 70067000 35445000 25271000 10174000 10714 1565 11000 38373;38374;38375;38376;38377 57615;57616;57617;57618;57619;57620;57621 57620 7 SGDAAIVDMVPGK RRSGKKLEDGPKFLKSGDAAIVDMVPGKPM LKSGDAAIVDMVPGKPMCVESFSDYPPLGR K S G G K P 2 0 0 2 0 0 0 2 0 1 0 1 1 0 1 1 0 0 0 2 0 0 13 0 1258.6227 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;P68104;A8K9C4;Q5VTE0;Q96RE1;A0A087WVQ9;Q53GE9;Q53GA1;Q53G85;B4DV42;Q8IUB0;Q504Z0;Q53HR1;B4DNE0;Q9NZS6;A0A087WV01;Q9H2I7;Q53G89;Q6P4C9;B4E2C5;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q16577;Q96EB3;Q2F837 Q6IPT9 396 408 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1 Elongation factor 1-alpha;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 2 5.0604E-05 92.866 1 2 4.8001 7.1401 7.318 2 Median NaN NaN NaN 0 0 Median 4.8001 7.1401 7.318 2 0 Median 15579000 3379800 12200000 773080 773080 0 14806000 2606700 12200000 10715 1421 11001 38378;38379;38380 57622;57623;57624 57624 626 3 SGDAAIVDMVPGKPMCVESFSDYPPLGR RRSGKKLEDGPKFLKSGDAAIVDMVPGKPM PMCVESFSDYPPLGRFAVRDMRQTVAVGVI K S G G R F 2 1 0 3 1 0 1 3 0 1 1 1 2 1 4 3 0 0 1 3 0 0 28 1 2994.3925 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;P68104;A8K9C4;Q5VTE0;Q96RE1;A0A087WVQ9;Q53GE9;Q53GA1;Q53G85;B4DV42;Q8IUB0;Q504Z0;Q53HR1;B4DNE0;Q9NZS6;Q53G89;Q6P4C9;B4E2C5;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q96EB3;Q2F837 Q6IPT9 396 423 EEF1A1;EEF1A1P5;EEF1A1L14 Elongation factor 1-alpha;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 3 1.3746E-06 73.649 5 0.33531 0.43777 40.827 4 Median 0.33531 0.43777 40.827 4 0 Median NaN NaN NaN 0 0 Median 22114000 15709000 6405000 22114000 15709000 6405000 0 0 0 10716 1421 11002;11003 38381;38382;38383;38384;38385 57625;57626;57627;57628;57629;57630;57631 57625 625;626 7 SGDETPGSEVPGDK EQGLGKREEDEPEERSGDETPGSEVPGDKA RSGDETPGSEVPGDKAAEEQGDDQDSEKSK R S G D K A 0 0 0 2 0 0 2 3 0 0 0 1 0 0 2 2 1 0 0 1 0 0 14 0 1373.5947 H3BQZ7;Q1KMD3 H3BQZ7 161 174 HNRNPUL2-BSCL2;HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 2 0.016645 88.596 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10717 1105 11004 38386 57632 57632 1 SGDHLHNDSQIEADFR ______________________________ GDHLHNDSQIEADFRLNDSHKHKDKHKDRE M S G F R L 1 1 1 3 0 1 1 1 2 1 1 0 0 1 0 2 0 0 0 0 0 0 16 0 1839.8136 P11387;B9EG90;Q6PK95;Q6NWZ5 P11387 2 17 TOP1 DNA topoisomerase 1 yes no 2;3 3.3666E-34 192.4 11 2 0.80692 1.119 20.383 12 Median 0.81088 1.095 20.776 10 0 Median 0.79716 1.3283 0.23482 2 0 Median 2347000000 1301200000 1045800000 1476400000 819100000 657330000 870540000 482100000 388440000 10718 1255 11005;11006 38387;38388;38389;38390;38391;38392;38393;38394;38395;38396;38397;38398;38399 57633;57634;57635;57636;57637;57638;57639;57640;57641;57642;57643;57644;57645;57646;57647;57648;57649;57650;57651;57652;57653;57654 57636 22 SGDLLVHLNCLLFVHR KRVFKRKKPQLRLEKSGDLLVHLNCLLFVH GDLLVHLNCLLFVHRLAEESRTNACASKCR K S G H R L 0 1 1 1 1 0 0 1 2 0 5 0 0 1 0 1 0 0 0 2 0 0 16 0 1892.0091 H0UI56;Q5EE01 H0UI56 38 53 C6orf173;CENPW Centromere protein W yes no 3 0.0010198 75.998 2 0.54739 0.74606 50.329 2 Median 0.54739 0.74606 50.329 2 0 Median NaN NaN NaN 0 0 Median 17328000 10229000 7099000 17328000 10229000 7099000 0 0 0 10719 1086 11007 38400;38401 57655;57656;57657;57658 57655 4 SGDSEVYQLGDVSQK NPVTIFSLATNEMWRSGDSEVYQLGDVSQK SGDSEVYQLGDVSQKTTWHRISVFRPGLRD R S G Q K T 0 0 0 2 0 2 1 2 0 0 1 1 0 0 0 3 0 0 1 2 0 0 15 0 1610.7424 Q567R6;A4D1U3;Q04837;C9K0U8;A0A0G2JLD8;E7EUY5;B7Z268 Q567R6 67 81 SSBP1 Single-stranded DNA-binding protein;Single-stranded DNA-binding protein, mitochondrial yes no 2 2.8518E-18 143.55 4 2 0.42119 1.3594 60.692 6 Linear 0.39667 0.50095 9.9498 4 0 Median 1.0057 1.5829 0.57475 2 0 Median 106830000 64150000 42675000 45027000 32260000 12767000 61798000 31890000 29908000 10720 550 11008 38402;38403;38404;38405;38406;38407 57659;57660;57661;57662;57663;57664;57665;57666;57667;57668;57669;57670;57671;57672;57673 57670 15 SGEGEVSGLMR YSSAEPHVSGVKRSRSGEGEVSGLMRKVPR KRSRSGEGEVSGLMRKVPRVSLERLDLDLT R S G M R K 0 1 0 0 0 0 2 3 0 0 1 0 1 0 0 2 0 0 0 1 0 0 11 0 1120.5183 B2R8R5;Q13263;M0R0K9 B2R8R5 473 483 TRIM28 Transcription intermediary factor 1-beta yes no 2 0.0040152 52.579 1 1.6901 2.3402 NaN 1 Median NaN NaN NaN 0 0 Median 1.6901 2.3402 NaN 1 0 Median 10986000 4064000 6922400 0 0 0 10986000 4064000 6922400 10721 716 11009 38408 57674 57674 250 1 SGEGIREPISVK QLLRKMGWTGGGLGKSGEGIREPISVKEQH LGKSGEGIREPISVKEQHKREGLGLDVERV K S G V K E 0 1 0 0 0 0 2 2 0 2 0 1 0 0 1 2 0 0 0 1 0 0 12 1 1270.6881 Q6NUN2;A3F769;A3F768;O15226;A2I829 Q6NUN2 572 583 NKRF;NRF NF-kappa-B-repressing factor yes no 2 0.046079 42.395 1 0.46432 0.60384 NaN 1 Median 0.46432 0.60384 NaN 1 0 Median NaN NaN NaN 0 0 Median 13762000 9442700 4319600 13762000 9442700 4319600 0 0 0 10722 541 11010 38409 57675 57675 1 SGELAQEYDK KNPKERTALFEEISRSGELAQEYDKRKKEM EEISRSGELAQEYDKRKKEMVKAEEDTQFN R S G D K R 1 0 0 1 0 1 2 1 0 0 1 1 0 0 0 1 0 0 1 0 0 0 10 0 1138.5142 Q14683;G8JLG1;Q6P2R1;Q6MZR8;A8K7A6;Q68EN4;H0Y7K8;Q5H934;Q7Z4C6 Q14683 161 170 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0041239 65.305 1 0.4363 0.55249 NaN 1 Median 0.4363 0.55249 NaN 1 0 Median NaN NaN NaN 0 0 Median 6378100 3867000 2511000 6378100 3867000 2511000 0 0 0 10723 1492 11011 38410 57676 57676 1 SGFGEISSPVIR ______________________________ MDRSGFGEISSPVIREAEVTRTARKQSAQK R S G I R E 0 1 0 0 0 0 1 2 0 2 0 0 0 1 1 3 0 0 0 1 0 0 12 0 1247.651 P57740;G3V1T4 P57740 4 15 NUP107 Nuclear pore complex protein Nup107 yes no 2 0.036679 34.755 1 1.1309 1.4371 NaN 1 Median NaN NaN NaN 0 0 Median 1.1309 1.4371 NaN 1 0 Median 4671200 2201300 2470000 0 0 0 4671200 2201300 2470000 10724 1384 11012 38411 57677 57677 1 SGFLAAR NLNNELTVEEQVEIRSGFLAARAQLPVMVI VEEQVEIRSGFLAARAQLPVMVIVTPQDRK R S G A R A 2 1 0 0 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 0 0 0 7 0 720.39187 Q9H6R4;A0A0A0MRW6;B4DF80;B3KPN5 Q9H6R4 935 941 NOL6 Nucleolar protein 6 yes no 2 0.022981 72.355 2 1.1895 1.6083 NaN 1 Median 1.1895 1.6083 NaN 1 0 Median NaN NaN NaN 0 0 Median 49851000 27987000 21864000 49851000 27987000 21864000 0 0 0 10725 1738 11013 38412;38413 57678;57679 57678 2 SGFNLEELEK TPPPYFNESIVVDMKSGFNLEELEKNNAQS VVDMKSGFNLEELEKNNAQSIRAIKGPHLA K S G E K N 0 0 1 0 0 0 3 1 0 0 2 1 0 1 0 1 0 0 0 0 0 0 10 0 1164.5663 A0A024R2Z6;Q9BVP2 A0A024R2Z6 413 422 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 2.7E-09 162.64 4 1 0.66121 0.83385 8.9919 4 Median 0.66178 0.84328 2.0691 3 0 Median 0.47886 0.70588 NaN 1 0 Median 128810000 80813000 47998000 119950000 75445000 44504000 8861500 5367800 3493700 10726 95 11014 38414;38415;38416;38417;38418 57680;57681;57682;57683;57684;57685;57686;57687;57688 57680 9 SGGARGFCMLK ______________________________ ______________________________ M S G L K A 1 1 0 0 1 0 0 3 0 0 1 1 1 1 0 1 0 0 0 0 0 0 11 1 1182.5638 F8W696 F8W696 2 12 APOA1 yes yes 2 0.022409 78.264 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10727 1069 11015 38419 57689 57689 382 1 SGGFQSMGLSYPVFK DTREMVRAQNKKKKKSGGFQSMGLSYPVFK SGGFQSMGLSYPVFKGIMKKGYKVPTPIQR K S G F K G 0 0 0 0 0 1 0 3 0 0 1 1 1 2 1 3 0 0 1 1 0 0 15 0 1603.7705 Q8TDD1;F8VRX4 Q8TDD1 95 109 DDX54 ATP-dependent RNA helicase DDX54 yes no 2 0.00022427 55.261 2 0.50676 0.76495 4.9212 2 Median NaN NaN NaN 0 0 Median 0.50676 0.76495 4.9212 2 0 Median 32916000 21511000 11405000 0 0 0 32916000 21511000 11405000 10728 1658 11016 38420;38421 57690;57691 57691 737 2 SGGGFGPDPGSGTTVPAR RERLRWPPPPKPRLKSGGGFGPDPGSGTTV GFGPDPGSGTTVPARRLPVPRPSFDASASE K S G A R R 1 1 0 1 0 0 0 6 0 0 0 0 0 1 3 2 2 0 0 1 0 0 18 0 1615.759 Q9H4L4 Q9H4L4 44 61 SENP3 Sentrin-specific protease 3 yes yes 2 6.4558E-15 132.06 3 2 1.609 2.0786 84.184 3 Plateau 0.3368 0.47603 NaN 1 0 Median 1.5869 2.0454 2.2827 2 0 Median 9038600 3676000 5362500 2325200 1304500 1020700 6713400 2371500 4341800 10729 1733 11017 38422;38423;38424;38425;38426 57692;57693;57694;57695;57696 57693 5 SGGGFSSGSAGIINYQR ______________________________ GGFSSGSAGIINYQRRTTSSSTRRSGGGGG R S G Q R R 1 1 1 0 0 1 0 5 0 2 0 0 0 1 0 4 0 0 1 0 0 0 17 0 1656.7856 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 13 29 KRT1 Keratin, type II cytoskeletal 1 no no 2 6.4023E-32 211.26 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 125840000 125840000 0 22080000 22080000 0 103760000 103760000 0 + 10730 1113;1114 11018 38427;38428;38429;38430;38431 57697;57698;57699;57700;57701 57697 5 SGGGGGGGGCGGGGGVSSLR MSVRYSSSKHYSSSRSGGGGGGGGCGGGGG GGGGCGGGGGVSSLRISSSKGSLGGGFSSG R S G L R I 0 1 0 0 1 0 0 13 0 0 1 0 0 0 0 3 0 0 0 1 0 0 20 0 1548.6699 CON__P13645;P13645 CON__P13645 16 35 KRT10 Keratin, type I cytoskeletal 10 yes no 2 1.1661E-09 87.932 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14462000 14462000 0 0 0 0 14462000 14462000 0 + 10731 960 11019 38432;38433;38434 57702;57703;57704 57702 3 SGGLGGSHALLLLR IPKKLLQKVFNDTCRSGGLGGSHALLLLRS RSGGLGGSHALLLLRSCGSLLPELKLEERT R S G L R S 1 1 0 0 0 0 0 4 1 0 5 0 0 0 0 2 0 0 0 0 0 0 14 0 1349.7779 E5KNY5;P42704;B8ZZ38;A0A0C4DG06;C9JCA9 E5KNY5 115 128 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 3 4.2349E-07 125.82 2 1 0.34655 0.47968 NaN 1 Median 0.34655 0.47968 NaN 1 0 Median NaN NaN NaN 0 0 Median 22205000 12607000 9598400 15488000 12607000 2881600 6716900 0 6716900 10732 1001 11020 38435;38436;38437 57705;57706;57707;57708 57706 4 SGGNEVSIEER KPAPPQTEQVESKRKSGGNEVSIEERLGAM SKRKSGGNEVSIEERLGAMDIDTHKKGKED K S G E R L 0 1 1 0 0 0 3 2 0 1 0 0 0 0 0 2 0 0 0 1 0 0 11 0 1175.5418 Q15061 Q15061 431 441 WDR43 WD repeat-containing protein 43 yes yes 2 1.0715E-11 172.27 4 2 0.91549 1.2683 9.7799 6 Median 0.97758 1.3367 6.893 4 0 Median 0.72493 1.1524 10.464 2 0 Median 199320000 111380000 87936000 108620000 56454000 52166000 90697000 54927000 35770000 10733 1505 11021 38438;38439;38440;38441;38442;38443 57709;57710;57711;57712;57713;57714;57715;57716;57717;57718 57713 10 SGGPVVVLVQLEREEEVTGPVIAPLFPQK NIELSYEVVDKDSIRSGGPVVVLVQLEREE EEVTGPVIAPLFPQKREEGWWVVIGDAKSN R S G Q K R 1 1 0 0 0 2 4 3 0 1 3 1 0 1 4 1 1 0 0 6 0 0 29 1 3086.7016 O75643;A4FU77;B4E150;Q9UNV9;A2RRQ7;Q7L5W4;Q9P172 O75643 2031 2059 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 2.8368E-14 106.88 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19380000 19380000 0 19380000 19380000 0 0 0 0 10734 1206 11022 38444 57719 57719 1 SGGSGHAVAEPASPEQELDQNK QGETQLLVSRKSRPKSGGSGHAVAEPASPE VAEPASPEQELDQNKGKGRDVESVQTPSKA K S G N K G 3 0 1 1 0 2 3 3 1 0 1 1 0 0 2 3 0 0 0 1 0 0 22 0 2207.0091 P46013 P46013 296 317 MKI67 Antigen KI-67 yes yes 2;3 9.2432E-25 108.71 5 2 0.8353 1.092 6.7854 6 Median 0.86613 1.0791 4.1131 4 0 Median 0.78568 1.1748 6.6589 2 0 Median 75978000 41644000 34334000 58491000 31256000 27235000 17487000 10388000 7099200 10735 1342 11023 38445;38446;38447;38448;38449;38450;38451 57720;57721;57722;57723;57724;57725;57726;57727;57728;57729;57730;57731;57732;57733;57734;57735;57736;57737;57738 57730 19 SGGTALHVAAAK QWLNSGHINDVRHAKSGGTALHVAAAKGYT HAKSGGTALHVAAAKGYTEVLKLLIQAGYD K S G A K G 4 0 0 0 0 0 0 2 1 0 1 1 0 0 0 1 1 0 0 1 0 0 12 0 1081.588 B2RAH5;O14974;F8VZN8;A0A024RBF1;F8VW28;H0YHL8 B2RAH5 198 209 PPP1R12A Protein phosphatase 1 regulatory subunit;Protein phosphatase 1 regulatory subunit 12A yes no 2 0.008044 37.191 1 0.54646 0.6897 NaN 1 Median 0.54646 0.6897 NaN 1 0 Median NaN NaN NaN 0 0 Median 11291000 7138000 4152700 11291000 7138000 4152700 0 0 0 10736 723 11024 38452 57739 57739 1 SGGTEGLLAEK GDQSAINELMQMRLRSGGTEGLLAEKLEAL MRLRSGGTEGLLAEKLEALITQTRAKQAAT R S G E K L 1 0 0 0 0 0 2 3 0 0 2 1 0 0 0 1 1 0 0 0 0 0 11 0 1060.5401 Q9UHB9;B4DVI7;Q96K98;B3KMI9 Q9UHB9 267 277 SRP68 Signal recognition particle subunit SRP68 yes no 2 0.024907 40.883 1 1.6859 2.2855 NaN 1 Median NaN NaN NaN 0 0 Median 1.6859 2.2855 NaN 1 0 Median 3715500 1373300 2342300 0 0 0 3715500 1373300 2342300 10737 1784 11025 38453 57740 57740 1 SGGVNQYVVQEVLSIK MYEFHLPLSPEELLKSGGVNQYVVQEVLSI GGVNQYVVQEVLSIKHLPPQLRAFQAAFRA K S G I K H 0 0 1 0 0 2 1 2 0 1 1 1 0 0 0 2 0 0 1 4 0 0 16 0 1718.9203 B3KMS0;Q15021;B3KY03;E7EN77;Q6ZV00;A0PJ76;F5GZK7;F5H431 B3KMS0 20 35 NCAPD2 Condensin complex subunit 1 yes no 2 4.7922E-118 243.88 3 2 0.69546 0.90643 15.924 5 Median 0.73708 0.96995 3.5549 3 0 Plateau 0.45015 0.71205 7.8343 2 0 Median 690820000 437010000 253810000 402500000 232570000 169930000 288320000 204440000 83873000 10738 757 11026 38454;38455;38456;38457;38458 57741;57742;57743;57744;57745;57746;57747;57748;57749 57743 9 SGHFEQAIK LLSKHRAFEDEMSGRSGHFEQAIKEGEDMI DEMSGRSGHFEQAIKEGEDMIAEEHFGSEK R S G I K E 1 0 0 0 0 1 1 1 1 1 0 1 0 1 0 1 0 0 0 0 0 0 9 0 1015.5087 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24 B2ZZ89 691 699 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 6.1919E-12 120.99 5 0.78072 0.98683 NaN 1 Median 0.78072 0.98683 NaN 1 0 Median NaN NaN NaN 0 0 Median 38549000 31062000 7487300 38549000 31062000 7487300 0 0 0 10739 346 11027 38459;38460;38461;38462;38463 57750;57751;57752;57753;57754;57755 57754 6 SGHTLPPLPVPGTNSTEQASVPR ______________________________ PVPGTNSTEQASVPRAMAATLGAGTPPRPQ M S G P R A 1 1 1 0 0 1 1 2 1 0 2 0 0 0 5 3 3 0 0 2 0 0 23 0 2341.2026 P58107;A0A087X1U6 A0A087X1U6 2 24 EPPK1 Epiplakin no no 2 3.161E-05 93.909 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 570810 570810 0 570810 570810 0 0 0 0 10740 373;1386 11028 38464 57756;57757 57756 2 SGICSLHPLLR DTESAEMKIAIYLSKSGICSLHPLLRGWEE YLSKSGICSLHPLLRGWEEALENVIKSTKP K S G L R G 0 1 0 0 1 0 0 1 1 1 3 0 0 0 1 2 0 0 0 0 0 0 11 0 1251.6758 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 628 638 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 0.00071903 80.916 4 0.80121 1.0778 9.8466 4 Median 0.80121 1.0778 9.8466 4 0 Median NaN NaN NaN 0 0 Median 73131000 38459000 34672000 73131000 38459000 34672000 0 0 0 10741 748 11029 38465;38466;38467;38468 57758;57759;57760;57761;57762;57763;57764 57762 7 SGIGDRPLQDLSNTSFVSNNTAESENK KMNKMKFKVNRRTQKSGIGDRPLQDLSNTS NTSFVSNNTAESENKSEDLSSERTSRRRRC K S G N K S 1 1 4 2 0 1 2 2 0 1 2 1 0 1 1 5 2 0 0 1 0 0 27 1 2879.3533 Q562F6 Q562F6 1208 1234 SGOL2 Shugoshin-like 2 yes yes 3 4.1227E-24 136.22 4 2 0.76659 1.1408 14.393 6 Median 0.78883 1.0341 13.78 4 0 Median 0.74923 1.2538 5.2997 2 0 Median 107150000 58723000 48424000 62254000 33270000 28983000 44894000 25453000 19441000 10742 1546 11030 38469;38470;38471;38472;38473;38474 57765;57766;57767;57768;57769;57770;57771;57772;57773;57774;57775;57776;57777;57778 57767 14 SGIIPQTR APEKELIHLLPIKDKSGIIPQTREKPVTDS LLPIKDKSGIIPQTREKPVTDSNKDEEDQE K S G T R E 0 1 0 0 0 1 0 1 0 2 0 0 0 0 1 1 1 0 0 0 0 0 8 0 870.49232 A8K905;Q8WTT2 A8K905 159 166 NOC3L Nucleolar complex protein 3 homolog yes no 2 0.035281 48.794 1 0.75606 1.0122 NaN 1 Median 0.75606 1.0122 NaN 1 0 Median NaN NaN NaN 0 0 Median 20203000 11606000 8597200 20203000 11606000 8597200 0 0 0 10743 643 11031 38475 57779 57779 1 SGIPDEVLQSILDQYSNK DSSALNAEIKSCHDKSGIPDEVLQSILDQY PDEVLQSILDQYSNKSESQKEDPFNIAEPR K S G N K S 0 0 1 2 0 2 1 1 0 2 2 1 0 0 1 3 0 0 1 1 0 0 18 0 2005.0004 Q9Y2X9;B3KMX4;B4DM04 Q9Y2X9 600 617 ZNF281 Zinc finger protein 281 yes no 2 0.001556 77.776 2 0.58112 0.7351 31.48 2 Median 0.58112 0.7351 31.48 2 0 Median NaN NaN NaN 0 0 Median 4194800 2573700 1621200 4194800 2573700 1621200 0 0 0 10744 1811 11032 38476;38477 57780;57781;57782 57780 3 SGIQPLCPER GYYKDIVENICGREKSGIQPLCPERSHISD CGREKSGIQPLCPERSHISDQSPLSSKRKA K S G E R S 0 1 0 0 1 1 1 1 0 1 1 0 0 0 2 1 0 0 0 0 0 0 10 0 1155.5706 P42166 P42166 335 344 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2 0.016376 56.432 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3111000 3111000 0 3111000 3111000 0 0 0 0 10745 1335 11033 38478 57783 57783 1 SGIQQIIECFR PGDPPLLQQPLQTSKSGIQQIIECFRSGTK QTSKSGIQQIIECFRSGTKQLKHILLKDVD K S G F R S 0 1 0 0 1 2 1 1 0 3 0 0 0 1 0 1 0 0 0 0 0 0 11 0 1349.6762 Q2TB10;C9JHX9;A0A087WXB4;C9K0M9;C9JLY3 Q2TB10 41 51 ZNF800 Zinc finger protein 800 yes no 2 0.0048352 64.73 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5331600 5331600 0 0 0 0 5331600 5331600 0 10746 1530 11034 38479 57784 57784 1 SGLAGCVVGGLLYAVGGR SDGTWLRLADLQVPRSGLAGCVVGGLLYAV AGCVVGGLLYAVGGRNNSPDGNTDSSALDC R S G G R N 2 1 0 0 1 0 0 6 0 0 3 0 0 0 0 1 0 0 1 3 0 0 18 0 1704.8981 A0A024R7C0;Q14145;K7EPZ3 A0A024R7C0 363 380 KEAP1 Kelch-like ECH-associated protein 1 yes no 2 5.2795E-07 98.902 1 0.42553 0.58008 NaN 1 Median 0.42553 0.58008 NaN 1 0 Median NaN NaN NaN 0 0 Median 1113000 712780 400180 1113000 712780 400180 0 0 0 10747 173 11035 38480 57785 57785 0 SGLELLK ADDEEEGVSPDTAIRSGLELLKVLSFTHPT VSPDTAIRSGLELLKVLSFTHPTSFHSAET R S G L K V 0 0 0 0 0 0 1 1 0 0 3 1 0 0 0 1 0 0 0 0 0 0 7 0 758.4538 G1UI16;Q29RF7 G1UI16 658 664 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 0.037967 83.377 2 0.71434 0.88418 NaN 1 Median 0.71434 0.88418 NaN 1 0 Median NaN NaN NaN 0 0 Median 1277000 763340 513620 1277000 763340 513620 0 0 0 10748 1076 11036 38481;38482 57786;57787 57787 2 SGLLVLTTPLASLAPR ______________________________ GLLVLTTPLASLAPRLASILTSAARLVNHT R S G P R L 2 1 0 0 0 0 0 1 0 0 5 0 0 0 2 2 2 0 0 1 0 0 16 0 1607.961 Q13057;K7EN91;K7ES73;K7EP09;K7EPT0;K7ESK6;B4E1C0 Q13057 6 21 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes no 2 2.0086E-13 147.58 5 0.28977 0.3963 8.3319 2 Median 0.28977 0.3963 8.3319 2 0 Median NaN NaN NaN 0 0 Median 18121000 16171000 1949500 18121000 16171000 1949500 0 0 0 10749 1462 11037 38483;38484;38485;38486;38487 57788;57789;57790;57791;57792;57793;57794 57788 7 SGLNQIPNRR FEESMKWKKLTNAQRSGLNQIPNRRFTLWW TNAQRSGLNQIPNRRFTLWWSPTINRANVY R S G R R F 0 2 2 0 0 1 0 1 0 1 1 0 0 0 1 1 0 0 0 0 0 0 10 1 1153.6316 Q6P2Q9;B4DK16;Q6JH02;Q6JH03;I3L3Z8 Q6P2Q9 1524 1533 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 0.0025451 44.318 2 0.60883 0.81752 NaN 1 Median 0.60883 0.81752 NaN 1 0 Median NaN NaN NaN 0 0 Median 29164000 21605000 7559000 29164000 21605000 7559000 0 0 0 10750 1592 11038 38488;38489 57795;57796;57797 57796 3 SGLQTDYATEK DVKSQKENVLQYCRKSGLQTDYATEKESAD YCRKSGLQTDYATEKESADGLQGETQLLVS K S G E K E 1 0 0 1 0 1 1 1 0 0 1 1 0 0 0 1 2 0 1 0 0 0 11 0 1211.567 P46013 P46013 264 274 MKI67 Antigen KI-67 yes yes 2 7.5639E-07 140.78 3 2 1.0704 1.3761 13.305 5 Median 1.0439 1.3126 4.2493 3 0 Median 1.1029 1.6674 1.8381 2 0 Median 190580000 91167000 99414000 151410000 73015000 78391000 39175000 18152000 21023000 10751 1342 11039 38490;38491;38492;38493;38494 57798;57799;57800;57801;57802;57803;57804;57805;57806;57807 57800 10 SGLSSPIYIDLR LYDVQAFKFGDFVLKSGLSSPIYIDLRGIV VLKSGLSSPIYIDLRGIVSRPRLLSQVADI K S G L R G 0 1 0 1 0 0 0 1 0 2 2 0 0 0 1 3 0 0 1 0 0 0 12 0 1319.7085 B5LY71;A8K5J1;P11172;E9PFD2;B5LY67;B5LY69;F2Z3P2;F2Z303;F8WDG4 B5LY71 30 41 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase yes no 2 0.00060215 79.659 2 0.23577 0.31941 NaN 1 Median 0.23577 0.31941 NaN 1 0 Median NaN NaN NaN 0 0 Median 12472000 10906000 1565800 12472000 10906000 1565800 0 0 0 10752 617 11040 38495;38496 57808;57809 57809 2 SGNELPLAVASTADLIR LQRYALNRITVWRSRSGNELPLAVASTADL NELPLAVASTADLIRCKLLDVTGGLGTDEL R S G I R C 3 1 1 1 0 0 1 1 0 1 3 0 0 0 1 2 1 0 0 1 0 0 17 0 1725.9261 Q9Y4W2;B7Z381 Q9Y4W2 80 96 LAS1L Ribosomal biogenesis protein LAS1L yes no 2 0.00024179 53.252 2 0.38707 0.52262 3.102 2 Median 0.38707 0.52262 3.102 2 0 Median NaN NaN NaN 0 0 Median 12863000 9156000 3707300 12863000 9156000 3707300 0 0 0 10753 1826 11041 38497;38498 57810;57811;57812 57811 3 SGNNETFTPNRVEK QEQPSRNSSLLEPQKSGNNETFTPNRVEKK KSGNNETFTPNRVEKKKLQHTYLCEEKENN K S G E K K 0 1 3 0 0 0 2 1 0 0 0 1 0 1 1 1 2 0 0 1 0 0 14 1 1591.759 Q6P0N0;G5E9K5;C9J2Q8 Q6P0N0 142 155 MIS18BP1 Mis18-binding protein 1 yes no 2 0.002309 101.72 2 0.94932 1.2063 NaN 1 Median 0.94932 1.2063 NaN 1 0 Median NaN NaN NaN 0 0 Median 3532700 1927500 1605200 3532700 1927500 1605200 0 0 0 10754 1588 11042 38499;38500 57813;57814 57814 2 SGNPLQPVSIENR KCTGDFSPSPEKLVKSGNPLQPVSIENRNL VKSGNPLQPVSIENRNLDLKHLVLESSEPP K S G N R N 0 1 2 0 0 1 1 1 0 1 1 0 0 0 2 2 0 0 0 1 0 0 13 0 1409.7263 Q5VWN6 Q5VWN6 1548 1560 FAM208B Protein FAM208B yes yes 2 0.00066079 99.215 3 1 0.77367 1.1164 26.624 2 Median 0.66573 0.92481 NaN 1 0 Median 0.89911 1.3476 NaN 1 0 Median 13211000 7903600 5307100 6115500 4742300 1373200 7095200 3161200 3934000 10755 1579 11043 38501;38502;38503;38504 57815;57816;57817;57818 57817 4 SGPASTFNDR VEWVKEMVANWDSLRSGPASTFNDRVFASE WDSLRSGPASTFNDRVFASELNAGIIKTDQ R S G D R V 1 1 1 1 0 0 0 1 0 0 0 0 0 1 1 2 1 0 0 0 0 0 10 0 1050.473 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3;Q9NPU8;Q9HAM7;Q9NVP8;Q9NVC0 B4E266 740 749 LARS;DKFZp762P233 Leucine--tRNA ligase, cytoplasmic yes no 2 0.026545 42.395 1 2.8288 3.6735 NaN 1 Median NaN NaN NaN 0 0 Median 2.8288 3.6735 NaN 1 0 Median 3445200 794860 2650400 0 0 0 3445200 794860 2650400 10756 732 11044 38505 57819 57819 1 SGPFGQIFRPDNFVFGQSGAGNNWAK AILVDLEPGTMDSVRSGPFGQIFRPDNFVF NFVFGQSGAGNNWAKGHYTEGAELVDSVLD R S G A K G 2 1 3 1 0 2 0 5 0 1 0 1 0 4 2 2 0 1 0 1 0 0 26 1 2797.3361 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;B4DQN9;B4DMJ5;Q8IZ29;P68371;Q8N6N5;Q8IWP6;M0QY85;M0QZL7;Q9BVA1;Q13885;A0A024QZU2;B2R6L0;A5D907;A5D906;A1L195;P04350;B4DJ43;B4DE77;M0R278;M0R1I1 Q5JP53 60 85 TUBB;TUBB2C;TUBB4B;TUBB4A;TUBB2B;TUBB2A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain no no 3 0.011305 22.888 2 4.1577 7.2085 4.4009 2 Median NaN NaN NaN 0 0 Median 4.1577 7.2085 4.4009 2 0 Median 156260000 24704000 131550000 0 0 0 156260000 24704000 131550000 10757 1241;1423;1230;1479 11045 38506;38507 57820;57821;57822;57823 57820 4 SGPPAPEEEEEEERQSGNTEQK EEPTMKTSKKGSKKKSGPPAPEEEEEEERQ EEEEEERQSGNTEQKSKSKQHRVSRRAQQR K S G Q K S 1 1 1 0 0 2 8 2 0 0 0 1 0 0 3 2 1 0 0 0 0 0 22 1 2456.0575 Q9NTI5;A9IYQ1 Q9NTI5 1319 1340 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 3 0.013123 22.24 2 2 0.54585 0.77009 22.903 4 Median 0.72952 0.93531 13.563 2 0 Median 0.42467 0.65231 9.5479 2 0 Median 20153000 12870000 7282500 8377400 4902900 3474500 11775000 7967400 3808000 10758 1759 11046 38508;38509;38510;38511 57824;57825;57826;57827 57824 4 SGPPEGGSVAVQDADIEK AGGDTVTLDDILSLKSGPPEGGSVAVQDAD PEGGSVAVQDADIEKRKGEVASDLVSPANQ K S G E K R 2 0 0 2 0 1 2 3 0 1 0 1 0 0 2 2 0 0 0 2 0 0 18 0 1754.8323 W5ZR30;Q9UGU0 W5ZR30 1390 1407 TCF20 Transcription factor 20 yes no 2 2.4215E-40 182.02 4 1 1.1564 1.4727 13.276 5 Median 1.1562 1.4658 8.6693 4 0 Median 1.2687 1.9204 NaN 1 0 Median 26989000 12636000 14353000 17861000 8745000 9115600 9128500 3890800 5237600 10759 1783 11047 38512;38513;38514;38515;38516 57828;57829;57830;57831;57832;57833;57834;57835;57836;57837;57838 57834 11 SGPSAHAHLYSQHPSFQTQQAK CEVFHKCPICPMAFKSGPSAHAHLYSQHPS HLYSQHPSFQTQQAKLIYKCAMCDTVFTHK K S G A K L 3 0 0 0 0 4 0 1 3 0 1 1 0 1 2 4 1 0 1 0 0 0 22 0 2406.1465 Q8N1G0;H0Y5I5 Q8N1G0 803 824 ZNF687 Zinc finger protein 687 yes no 4 0.015694 20.657 1 0.42692 0.54077 NaN 1 Median 0.42692 0.54077 NaN 1 0 Median NaN NaN NaN 0 0 Median 6259600 4098700 2160800 6259600 4098700 2160800 0 0 0 10760 1634 11048 38517 57839 57839 1 SGPSLNELIPDGYNR TCTGFQKETLTFLKKSGPSLNELIPDGYNR SGPSLNELIPDGYNRCLVAGLLSPRFVDVQ K S G N R C 0 1 2 1 0 0 1 2 0 1 2 0 0 0 2 2 0 0 1 0 0 0 15 0 1630.7951 Q8WYP5 Q8WYP5 506 520 AHCTF1 Protein ELYS yes yes 2 2.2167E-55 188.96 3 1 0.77301 1.0356 10.907 4 Median 0.78368 1.057 2.7425 3 0 Median 0.53054 0.84543 NaN 1 0 Median 106280000 62248000 44032000 74381000 41408000 32974000 31899000 20841000 11059000 10761 1670 11049 38518;38519;38520;38521 57840;57841;57842;57843;57844 57842 5 SGQAGYVPCNILGEARPEDAGAPFEQAGQK EVLEDGRQWWKLRSRSGQAGYVPCNILGEA RPEDAGAPFEQAGQKYWGPASPTHKLPPSF R S G Q K Y 5 1 1 1 1 3 3 5 0 1 1 1 0 1 3 1 0 0 1 1 0 0 30 1 3116.4622 Q9H6S3 Q9H6S3 535 564 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 yes yes 3 0.00034485 63.297 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 835360 835360 0 835360 835360 0 0 0 0 10762 1739 11050 38522 57845 57845 1 SGQGAFGNMCR AVARIPRVRGGGTHRSGQGAFGNMCRGGRM GTHRSGQGAFGNMCRGGRMFAPTKTWRRWH R S G C R G 1 1 1 0 1 1 0 3 0 0 0 0 1 1 0 1 0 0 0 0 0 0 11 0 1183.4863 P36578;Q59GY2;B4DFI6;B4DMJ6;Q53G74;H3BTP7;H3BU31;B4DP82 P36578 87 97 RPL4 60S ribosomal protein L4 yes no 2 1.0432E-11 138.26 5 0.68166 0.90813 2.7339 3 Median 0.68166 0.90813 2.7339 3 0 Median NaN NaN NaN 0 0 Median 62067000 32320000 29746000 62067000 32320000 29746000 0 0 0 10763 1325 11051 38523;38524;38525;38526;38527 57846;57847;57848;57849;57850;57851;57852;57853;57854 57850 9 SGQSALYDALFSSQSPK KQDFLKEIVETFANKSGQSALYDALFSSQS QSALYDALFSSQSPKDTSFLGSDDIGNIDV K S G P K D 2 0 0 1 0 2 0 1 0 0 2 1 0 1 1 5 0 0 1 0 0 0 17 0 1784.8581 D3DX73;P49792;B4DZH4;J3KNE0;Q7Z3J3;A6NKT7 D3DX73 380 396 hCG_1994636;RANBP2;RGPD3;RGPD4 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 4;RanBP2-like and GRIP domain-containing protein 3 yes no 2 0.0021072 97.797 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1562000 1562000 0 1562000 1562000 0 0 0 0 10764 987 11052 38528 57855 57855 1 SGQVYSFGCNDEGALGR VQAEAGGMHTVCLSKSGQVYSFGCNDEGAL QVYSFGCNDEGALGRDTSVEGSEMVPGKVE K S G G R D 1 1 1 1 1 1 1 4 0 0 1 0 0 1 0 2 0 0 1 1 0 0 17 0 1815.7846 Q5T081;A0A0S2Z3I4;A0A0S2Z404;P18754;C9JW69;C9JRH2;C9JMJ4;C9J3R0;C9JQZ4 Q5T081 85 101 RCC1 Regulator of chromosome condensation yes no 2 1.1486E-33 179.83 4 1 0.88327 1.1865 34.363 5 Median 0.91143 1.2173 4.3876 4 0 Median 0.39598 0.56538 NaN 1 0 Median 61645000 32796000 28849000 51274000 26320000 24953000 10372000 6476000 3895800 10765 453 11053 38529;38530;38531;38532;38533 57856;57857;57858;57859;57860;57861;57862;57863;57864;57865;57866;57867 57858 12 SGSMDPSGAHPSVR RRDDPAARMSRSSGRSGSMDPSGAHPSVRQ RSGSMDPSGAHPSVRQTPSRQPPLPHRSRG R S G V R Q 1 1 0 1 0 0 0 2 1 0 0 0 1 0 2 4 0 0 0 1 0 0 14 0 1383.6201 B4DDX2;B2R7B5;Q07666 B4DDX2 18 31 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 2;3 2.1833E-14 110.08 2 1.2695 1.7539 16.834 2 Median NaN NaN NaN 0 0 Median 1.2695 1.7539 16.834 2 0 Median 11695000 4893000 6801500 0 0 0 11695000 4893000 6801500 10766 704 11054 38534;38535 57868;57869 57868 247 2 SGSPAVLAFAK RVFGAPEVLENLEVKSGSPAVLAFAKEKSF LEVKSGSPAVLAFAKEKSFGWPSFITYTVG K S G A K E 3 0 0 0 0 0 0 1 0 0 1 1 0 1 1 2 0 0 0 1 0 0 11 0 1046.576 Q8TEM1 Q8TEM1 1725 1735 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.032832 39.022 1 0.45794 0.59235 NaN 1 Median 0.45794 0.59235 NaN 1 0 Median NaN NaN NaN 0 0 Median 4737100 2693500 2043600 4737100 2693500 2043600 0 0 0 10767 1661 11055 38536 57870 57870 1 SGSPVATFK GDDGALKIWDLRQFKSGSPVATFKQHVAPV DLRQFKSGSPVATFKQHVAPVTSVEWHPQD K S G F K Q 1 0 0 0 0 0 0 1 0 0 0 1 0 1 1 2 1 0 0 1 0 0 9 0 892.46543 Q8TCJ8;Q8NCK5;B2RDP6;Q9BQ67;B4DTI1 Q8TCJ8 342 350 DKFZp564C172;GRWD1 Glutamate-rich WD repeat-containing protein 1 no no 2 0.023874 49.715 1 0.71563 0.90745 NaN 1 Median 0.71563 0.90745 NaN 1 0 Median NaN NaN NaN 0 0 Median 16204000 9620400 6583900 16204000 9620400 6583900 0 0 0 10768 739;858 11056 38537 57871 57871 1 SGSSSPDSEITELK QKGCRLSPRDTYSDRSGSSSPDSEITELKF RSGSSSPDSEITELKFPSINHD________ R S G L K F 0 0 0 1 0 0 2 1 0 1 1 1 0 0 1 5 1 0 0 0 0 0 14 0 1435.6678 P17812;B4E1E0 P17812 571 584 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.00038718 64.121 1 2 1.2675 1.7028 173.96 2 Median 0.38584 0.49766 NaN 1 0 Median 4.1635 5.8261 NaN 1 0 Median 16617000 5231000 11386000 5976700 4051200 1925600 10640000 1179900 9460200 10769 1278 11057 38538;38539;38540 57872;57873;57874 57874 3 SGTALPSYR DKVKLMKFSRPKKTRSGTALPSYRKFVTKS RPKKTRSGTALPSYRKFVTKSSKKSIFVLP R S G Y R K 1 1 0 0 0 0 0 1 0 0 1 0 0 0 1 2 1 0 1 0 0 0 9 0 950.48214 E7ETD6;Q12830;F5GXF5 E7ETD6 1688 1696 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.02371 49.833 2 1.1143 1.5205 7.1514 2 Median NaN NaN NaN 0 0 Median 1.1143 1.5205 7.1514 2 0 Median 11273000 5243400 6029100 0 0 0 11273000 5243400 6029100 10770 1015 11058 38541;38542 57875;57876 57876 2 SGTGFGESYSLANPSIR DAKESRAAALRAANKSGTGFGESYSLANPS TGFGESYSLANPSIRAGEDIPQPTIFNGKL K S G I R A 1 1 1 0 0 0 1 3 0 1 1 0 0 1 1 4 1 0 1 0 0 0 17 0 1741.8271 A0A024R9R7;Q9ULG1;A8K2V6;H0YMN5 A0A024R9R7 487 503 INOC1;INO80 DNA helicase INO80 yes no 2 1.7914E-10 132.06 4 2 0.69245 0.95752 24.552 5 Median 0.63608 0.88497 33.816 3 0 Median 0.735 1.0353 11.046 2 0 Median 35365000 21581000 13785000 14802000 8831500 5970200 20563000 12749000 7814300 10771 230 11059 38543;38544;38545;38546;38547;38548 57877;57878;57879;57880;57881;57882;57883 57878 7 SGTLACTGSLVNNTANDR DGRRDIIRAVGAYSKSGTLACTGSLVNNTA LACTGSLVNNTANDRKMYFLTAHHCGMGTA K S G D R K 2 1 3 1 1 0 0 2 0 0 2 0 0 0 0 2 3 0 0 1 0 0 18 0 1849.8588 CON__P15636 CON__P15636 236 253 yes yes 2 7.0061E-59 237.48 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 160590000 160590000 0 160590000 160590000 0 0 0 0 + 10772 962 11060 38549;38550;38551;38552 57884;57885;57886;57887;57888 57885 5 SGTLACTGSLVNNTANDRK DGRRDIIRAVGAYSKSGTLACTGSLVNNTA ACTGSLVNNTANDRKMYFLTAHHCGMGTAS K S G R K M 2 1 3 1 1 0 0 2 0 0 2 1 0 0 0 2 3 0 0 1 0 0 19 1 1977.9538 CON__P15636 CON__P15636 236 254 yes yes 2;3 4.9586E-73 217.39 10 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1429800000 1429800000 0 1279100000 1279100000 0 150790000 150790000 0 + 10773 962 11061 38553;38554;38555;38556;38557;38558;38559;38560;38561;38562;38563;38564;38565 57889;57890;57891;57892;57893;57894;57895;57896;57897;57898;57899;57900;57901;57902;57903 57892 15 SGVAITFLTK EDYIHRIGRTGRAGKSGVAITFLTKEDSAV GRAGKSGVAITFLTKEDSAVFYELKQAILE K S G T K E 1 0 0 0 0 0 0 1 0 1 1 1 0 1 0 1 2 0 0 1 0 0 10 0 1035.5964 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56 B3KY11 741 750 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.0072174 86.882 2 0.48983 0.63211 30.333 2 Median 0.48983 0.63211 30.333 2 0 Median NaN NaN NaN 0 0 Median 10321000 6800900 3520500 10321000 6800900 3520500 0 0 0 10774 45 11062 38566;38567 57904;57905 57904 2 SGVDGPHFPLSLSTCLFGR ______________________________ GPHFPLSLSTCLFGRGIECDIRIQLPVVSK R S G G R G 0 1 0 1 1 0 0 3 1 0 3 0 0 2 2 3 1 0 0 1 0 0 19 0 2045.9993 P46013;Q70L72;Q70L73 P46013 13 31 MKI67 Antigen KI-67 no no 2;3 1.2097E-19 148.97 5 2 0.90463 1.2777 15.087 4 Median 0.90463 1.2526 0.18396 2 0 Median 0.91496 1.4927 19.371 2 0 Median 416430000 172020000 244410000 250190000 95570000 154620000 166240000 76453000 89788000 10775 1342;1604 11063 38568;38569;38570;38571;38572;38573;38574 57906;57907;57908;57909;57910;57911;57912;57913 57908 7 SGVGNVFIK PIRIMWSQRDPSLRKSGVGNVFIKNLDKSI DPSLRKSGVGNVFIKNLDKSIDNKALYDTF K S G I K N 0 0 1 0 0 0 0 2 0 1 0 1 0 1 0 1 0 0 0 2 0 0 9 0 919.51272 B1ANR0;Q6IQ30;Q13310;B1ANR1;H0YEQ8 B1ANR0 96 104 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 no no 2 0.0039905 93.195 2 1 0.28062 0.34382 NaN 1 Median 0.28062 0.34382 NaN 1 0 Median NaN NaN NaN 0 0 Median 37784000 28126000 9658900 33781000 28126000 5655200 4003700 0 4003700 10776 676 11064 38575;38576;38577 57914;57915;57916 57915 3 SGVLDESTIATILR VLDIIKHIVAKGEHKSGVLDESTIATILRE KSGVLDESTIATILREVLEGLEYLHKNGQI K S G L R E 1 1 0 1 0 0 1 1 0 2 2 0 0 0 0 2 2 0 0 1 0 0 14 0 1473.8039 A0A024R2M7;O95747;C9JIG9 A0A024R2M7 115 128 OXSR1 Serine/threonine-protein kinase OSR1 yes no 2 8.0661E-05 129.84 3 0.49315 0.68252 NaN 1 Median 0.49315 0.68252 NaN 1 0 Median NaN NaN NaN 0 0 Median 16728000 10572000 6156000 16728000 10572000 6156000 0 0 0 10777 88 11065 38578;38579;38580 57917;57918;57919 57919 3 SGVNSELVK NAMLKSICEVLDLERSGVNSELVKRILNFL VLDLERSGVNSELVKRILNFLMHPKPSGKP R S G V K R 0 0 1 0 0 0 1 1 0 0 1 1 0 0 0 2 0 0 0 2 0 0 9 0 931.49746 B4DNW3;P35659;B4DFG0;D6RDA2;H0Y8X0 P35659 169 177 DEK Protein DEK no no 2 0.0042296 81.296 1 2 0.61245 0.97808 0.032094 2 Median NaN NaN NaN 0 0 Median 0.61245 0.97808 0.032094 2 0 Median 103320000 70285000 33038000 15949000 15949000 0 87374000 54336000 33038000 10778 1322;843 11066 38581;38582;38583 57920;57921;57922 57921 3 SGVNSELVKR NAMLKSICEVLDLERSGVNSELVKRILNFL LDLERSGVNSELVKRILNFLMHPKPSGKPL R S G K R I 0 1 1 0 0 0 1 1 0 0 1 1 0 0 0 2 0 0 0 2 0 0 10 1 1087.5986 P35659;B4DFG0;D6RDA2;H0Y8X0 P35659 169 178 DEK Protein DEK yes no 2 0.0037399 80.688 1 2 0.81821 1.0641 NaN 1 Median 0.81821 1.0641 NaN 1 0 Median NaN NaN NaN 0 0 Median 58718000 21318000 37400000 41026000 21318000 19708000 17693000 0 17693000 10779 1322 11067 38584;38585;38586 57923;57924;57925 57925 3 SGVSITIDDPVR TLGDTLTRRSISQQKSGVSITIDDPVRTAQ QQKSGVSITIDDPVRTAQVPSPPRGKISNI K S G V R T 0 1 0 2 0 0 0 1 0 2 0 0 0 0 1 2 1 0 0 2 0 0 12 0 1257.6565 B4DQZ7;G3V3B0;Q69YJ6;S4R3H4;E7EQT4;Q9UKV3 B4DQZ7 891 902 ACIN1;DKFZp667N107 Apoptotic chromatin condensation inducer in the nucleus yes no 2 0.00054788 72.006 1 0.29777 0.39956 NaN 1 Median 0.29777 0.39956 NaN 1 0 Median NaN NaN NaN 0 0 Median 14019000 11200000 2819000 14019000 11200000 2819000 0 0 0 10780 851 11068 38587 57926 57926 1 SGVSLAALK VSELITKAVAASKERSGVSLAALKKALAAA AASKERSGVSLAALKKALAAAGYDVEKNNS R S G L K K 2 0 0 0 0 0 0 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 9 0 844.50182 B2R984;A3R0T8;P10412;Q4VB24;A3R0T7;P16402;P16403 P16403 55 63 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 1;2 0.00019719 131.22 10 4 0.75901 1.1031 7.4924 10 Linear 0.83181 1.0945 5.2882 6 0 Linear 0.65818 1.0312 9.8728 4 0 Median 13791000000 7769000000 6022000000 10561000000 5922700000 4638600000 3229600000 1846300000 1383400000 10781 542;1274 11069 38588;38589;38590;38591;38592;38593;38594;38595;38596;38597;38598;38599;38600;38601 57927;57928;57929;57930;57931;57932;57933;57934;57935;57936;57937;57938;57939;57940;57941;57942;57943;57944;57945;57946;57947;57948;57949;57950 57928 23 SGVSLAALKK VSELITKAVAASKERSGVSLAALKKALAAA ASKERSGVSLAALKKALAAAGYDVEKNNSR R S G K K A 2 0 0 0 0 0 0 1 0 0 2 2 0 0 0 2 0 0 0 1 0 0 10 1 972.59678 B2R984;A3R0T8;P10412;Q4VB24;A3R0T7;P16402;P16403 P16403 55 64 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 2;3 1.5518E-06 141.52 7 2 0.86371 1.0589 8.5191 9 Median 0.86473 1.0636 9.8201 7 0 Median 0.64008 1.0484 1.4105 2 0 Median 9462400000 5149900000 4312500000 7873500000 4217100000 3656400000 1588900000 932830000 656060000 10782 542;1274 11070 38602;38603;38604;38605;38606;38607;38608;38609;38610 57951;57952;57953;57954;57955;57956;57957;57958;57959;57960;57961;57962;57963;57964;57965;57966;57967;57968 57955 18 SGYFALGNEK NKNISHVHTMDFSPRSGYFALGNEKGKALM DFSPRSGYFALGNEKGKALMYRLHHYSDF_ R S G E K G 1 0 1 0 0 0 1 2 0 0 1 1 0 1 0 1 0 0 1 0 0 0 10 0 1084.5189 Q9Y5J1;B2RAX6 Q9Y5J1 533 542 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2 6.9192E-05 99.013 4 1 1.0044 1.2595 7.3673 5 Median 1.0088 1.2589 5.0647 4 0 Median 0.92048 1.4187 NaN 1 0 Median 169570000 82140000 87429000 140990000 66631000 74362000 28576000 15508000 13068000 10783 1830 11071 38611;38612;38613;38614;38615 57969;57970;57971;57972;57973;57974;57975 57973 7 SGYGFNEPEQSR SYDSRSSLGGRDLYRSGYGFNEPEQSRFGG LYRSGYGFNEPEQSRFGGSYGGRFESSYRN R S G S R F 0 1 1 0 0 1 2 2 0 0 0 0 0 1 1 2 0 0 1 0 0 0 12 0 1369.5899 Q5BKZ1 Q5BKZ1 91 102 ZNF326 DBIRD complex subunit ZNF326 yes yes 2 1.5419E-11 155.53 5 1 0.46153 0.62444 40.454 4 Median 0.46611 0.59743 5.9746 3 0 Plateau 1.0604 1.3622 NaN 1 0 Median 28398000 19455000 8942400 24705000 17434000 7271000 3693000 2021700 1671300 10784 1555 11072 38616;38617;38618;38619;38620;38621 57976;57977;57978;57979;57980;57981;57982;57983 57978 8 SGYISESENSEISQQVR MSICVPSETVDEIVKSGYISESENSEISQQ YISESENSEISQQVRFKTVTVLAQVHPIPP K S G V R F 0 1 1 0 0 2 3 1 0 2 0 0 0 0 0 5 0 0 1 1 0 0 17 0 1911.881 Q96QE3;H0UIC2;A0A075B754 Q96QE3 302 318 ATAD5 ATPase family AAA domain-containing protein 5 yes no 2 5.5661E-12 139.48 3 2 1.3303 1.6978 14.952 3 Median 1.1773 1.6298 20.88 2 0 Median 1.3313 1.6978 NaN 1 0 Median 14893000 6522700 8370300 7409400 4349500 3059800 7483700 2173200 5310500 10785 1698 11073 38622;38623;38624;38625;38626 57984;57985;57986;57987;57988;57989;57990;57991;57992 57984 9 SGYSLNFSEGDGR FTQKPGFPKRGQKRKSGYSLNFSEGDGRRR RKSGYSLNFSEGDGRRRRVLLRGRESPAAG K S G G R R 0 1 1 1 0 0 1 3 0 0 1 0 0 1 0 3 0 0 1 0 0 0 13 0 1387.6004 J3QK86;J3KPG5;F8VU39;Q9UIF9;A0A0C4DGI9 J3QK86 1715 1727 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 9.2037E-05 78.653 2 1 0.74821 1.0049 27.357 2 Median 0.61274 0.82819 NaN 1 0 Median 0.91364 1.2194 NaN 1 0 Median 13131000 7004100 6126700 8050000 4594200 3455800 5080700 2409800 2670900 10786 1062 11074 38627;38628;38629 57993;57994;57995 57993 3 SGYSLNFSEGDGRR FTQKPGFPKRGQKRKSGYSLNFSEGDGRRR KSGYSLNFSEGDGRRRRVLLRGRESPAAGP K S G R R R 0 2 1 1 0 0 1 3 0 0 1 0 0 1 0 3 0 0 1 0 0 0 14 1 1543.7015 J3QK86;J3KPG5;F8VU39;Q9UIF9;A0A0C4DGI9 J3QK86 1715 1728 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 3 0.040619 16.939 1 0.90511 1.1989 NaN 1 Median NaN NaN NaN 0 0 Median 0.90511 1.1989 NaN 1 0 Median 4813900 2155500 2658400 0 0 0 4813900 2155500 2658400 10787 1062 11075 38630 57996 57996 1 SHAAEPARDGVEASAEGPR ______________________________ EPARDGVEASAEGPRAVFVLLEERRPADSA M S H P R A 5 2 0 1 0 0 3 2 1 0 0 0 0 0 2 2 0 0 0 1 0 0 19 1 1905.8929 A0A024QZ23;P19532 A0A024QZ23 2 20 TFE3 Transcription factor E3 yes no 3 9.9453E-05 46.663 1 0.92284 1.1609 NaN 1 Median 0.92284 1.1609 NaN 1 0 Median NaN NaN NaN 0 0 Median 2625100 1491400 1133700 2625100 1491400 1133700 0 0 0 10788 4 11076 38631 57997 57997 1 SHACFQIILR CRTSGQTFANSNSSRSHACFQIILRAKGRM SNSSRSHACFQIILRAKGRMHGKFSLVDLA R S H L R A 1 1 0 0 1 1 0 0 1 2 1 0 0 1 0 1 0 0 0 0 0 0 10 0 1243.6496 A8K3S3;A0A140VKF1;Q99661;B7Z7M6;B7Z6Q6;Q8N5N1 A8K3S3 470 479 KIF2C Kinesin-like protein;Kinesin-like protein KIF2C yes no 2;3 0.002162 72.485 2 0.60976 0.80925 NaN 1 Median 0.60976 0.80925 NaN 1 0 Median NaN NaN NaN 0 0 Median 8806700 6347500 2459200 8806700 6347500 2459200 0 0 0 10789 514 11077 38632;38633 57998;57999 57998 2 SHAIFTISLEQR SRTVASTAMNSQSSRSHAIFTISLEQRKKS SSRSHAIFTISLEQRKKSDKNSSFRSKLHL R S H Q R K 1 1 0 0 0 1 1 0 1 2 1 0 0 1 0 2 1 0 0 0 0 0 12 0 1400.7412 Q59HG1;O95239;Q6PKB2 Q59HG1 215 226 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2;3 5.1985E-20 190.57 7 4 0.84068 1.1857 12.086 11 Median 0.916 1.2177 10.428 7 0 Median 0.86072 1.3978 16.323 4 0 Linear 331080000 185410000 145670000 170450000 91147000 79300000 160630000 94262000 66369000 10790 1216 11078 38634;38635;38636;38637;38638;38639;38640;38641;38642;38643;38644 58000;58001;58002;58003;58004;58005;58006;58007;58008;58009;58010;58011;58012;58013;58014;58015;58016 58001 17 SHAVFQIILR CRTSGQTSANAHSSRSHAVFQIILRRKGKL AHSSRSHAVFQIILRRKGKLHGKFSLIDLA R S H L R R 1 1 0 0 0 1 0 0 1 2 1 0 0 1 0 1 0 0 0 1 0 0 10 0 1182.6873 B0AZS5;O00139;B4DM85 B0AZS5 389 398 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A no no 2;3 0.00019684 91.584 2 1 1.1067 1.5503 21.455 2 Median 0.94703 1.3321 NaN 1 0 Median 1.2934 1.8043 NaN 1 0 Median 13136000 5417400 7718900 7218400 3044100 4174300 5918000 2373300 3544600 10791 664;1163 11079 38645;38646;38647 58017;58018;58019;58020;58021;58022 58019 6 SHAVLLVK NRTVGATRLNQRSSRSHAVLLVKVDQRERL LNQRSSRSHAVLLVKVDQRERLAPFRQREG R S H V K V 1 0 0 0 0 0 0 0 1 0 2 1 0 0 0 1 0 0 0 2 0 0 8 0 865.53854 Q14807;A0A024R632;B7Z9T5;H3BRB3;H3BTH5 Q14807 246 253 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 0.001933 111.65 1 0.94651 1.184 NaN 1 Median 0.94651 1.184 NaN 1 0 Median NaN NaN NaN 0 0 Median 17777000 8249400 9527400 17777000 8249400 9527400 0 0 0 10792 1497 11080 38648 58023;58024 58023 2 SHCHQPDLAGLEALR RSRAITQGHRIMVMRSHCHQPDLAGLEALR SHCHQPDLAGLEALRQRERLPTTAQQEDPE R S H L R Q 2 1 0 1 1 1 1 1 2 0 3 0 0 0 1 1 0 0 0 0 0 0 15 0 1702.8209 Q4VC44;I3L188;J3KNW1;B3KRZ0;B3KPY2;B3KP60;I3L1A7 Q4VC44 655 669 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 3 7.5708E-07 74.772 1 0.6627 0.88256 NaN 1 Median 0.6627 0.88256 NaN 1 0 Median NaN NaN NaN 0 0 Median 20065000 9922000 10143000 20065000 9922000 10143000 0 0 0 10793 1536 11081 38649 58025;58026 58026 2 SHDDGNIDLESDSFLK KKYKRQPEESESKTKSHDDGNIDLESDSFL HDDGNIDLESDSFLKFDSEPSAVALELPTR K S H L K F 0 0 1 4 0 0 1 1 1 1 2 1 0 1 0 3 0 0 0 0 0 0 16 0 1790.7959 P18583;D3DSF7 P18583 142 157 SON Protein SON yes no 2;3 0.010692 90.476 2 0.58887 0.7373 NaN 1 Median 0.58887 0.7373 NaN 1 0 Median NaN NaN NaN 0 0 Median 8684900 5568200 3116700 8684900 5568200 3116700 0 0 0 10794 1282 11082 38650;38651 58027;58028 58027 2 SHDTTSNTLAQLLAK GSVRRIQSGLGALSRSHDTTSNTLAQLLAK SHDTTSNTLAQLLAKAERVSSHANAAQERA R S H A K A 2 0 1 1 0 1 0 0 1 0 3 1 0 0 0 2 3 0 0 0 0 0 15 0 1598.8264 Q969G5;E9PIE3 Q969G5 70 84 PRKCDBP Protein kinase C delta-binding protein yes no 2;3 5.9633E-21 166.62 2 0.72722 0.91555 18.267 2 Median 0.72722 0.91555 18.267 2 0 Median NaN NaN NaN 0 0 Median 10969000 5829300 5139400 10969000 5829300 5139400 0 0 0 10795 1678 11083 38652;38653 58029;58030 58029 2 SHEGETAYIR DMTYAVRKLDNTKFRSHEGETAYIRVKVDG NTKFRSHEGETAYIRVKVDGPRSPSYGRSR R S H I R V 1 1 0 0 0 0 2 1 1 1 0 0 0 0 0 1 1 0 1 0 0 0 10 0 1161.5415 J3KTL2;Q07955;A8K1L8;J3KSR8;B7Z570 J3KTL2 182 191 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2;3 1.3972E-70 232.46 6 2 0.525 0.72794 33.274 8 Median 0.491 0.68622 12.011 6 0 Median 0.82192 1.3285 2.8873 2 0 Median 539270000 346400000 192880000 427520000 286930000 140590000 111750000 59462000 52286000 10796 1139 11084 38654;38655;38656;38657;38658;38659;38660;38661 58031;58032;58033;58034;58035;58036;58037;58038;58039;58040;58041;58042;58043 58039 13 SHEGETSYIR DMEYALRKLDDTKFRSHEGETSYIRVYPER DTKFRSHEGETSYIRVYPERSTSYGYSRSR R S H I R V 0 1 0 0 0 0 2 1 1 1 0 0 0 0 0 2 1 0 1 0 0 0 10 0 1177.5364 Q13242;A8K3M9 Q13242 172 181 SRSF9 Serine/arginine-rich splicing factor 9 yes no 2 0.004289 74.376 2 0.9346 1.238 NaN 1 Median 0.9346 1.238 NaN 1 0 Median NaN NaN NaN 0 0 Median 15209000 5949400 9259600 15209000 5949400 9259600 0 0 0 10797 1467 11085 38662;38663 58044;58045;58046 58046 3 SHFIVALK GKGKFGNVYLAREKKSHFIVALKVLFKSQI YLAREKKSHFIVALKVLFKSQIEKEGVEHQ K S H L K V 1 0 0 0 0 0 0 0 1 1 1 1 0 1 0 1 0 0 0 1 0 0 8 0 913.53854 B2RC06;J3KT86;Q96GD4;J3KTD6;J3QLN8;J3QR41;J3KRJ2 B2RC06 99 106 AURKB Aurora kinase B no no 2 1.5048E-05 143 3 2 1.2392 1.5018 17.341 5 Linear 1.1601 1.4481 8.8398 3 0 Plateau 0.66154 1.0052 0.97174 2 0 Median 192120000 97592000 94526000 148110000 71289000 76825000 44003000 26302000 17701000 10798 731;1686 11086 38664;38665;38666;38667;38668 58047;58048;58049;58050;58051;58052;58053;58054 58051 8 SHFTRPAGVSSAVIPVLR DFLPLIHVYLQCRTRSHFTRPAGVSSAVIP TRPAGVSSAVIPVLRKTLWRQLQSRLLSTD R S H L R K 2 2 0 0 0 0 0 1 1 1 1 0 0 1 2 3 1 0 0 3 0 0 18 1 1893.0585 O60287 O60287 1282 1299 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 3 3.2438E-06 58.577 2 0.47881 0.66485 7.6357 2 Median NaN NaN NaN 0 0 Median 0.47881 0.66485 7.6357 2 0 Median 14981000 10048000 4933000 0 0 0 14981000 10048000 4933000 10799 1190 11087 38669;38670 58055;58056 58056 2 SHGFAAEFK YLNTNPVGGLLEYARSHGFAAEFKLVDQSG LLEYARSHGFAAEFKLVDQSGPPHEPKFVY R S H F K L 2 0 0 0 0 0 1 1 1 0 0 1 0 2 0 1 0 0 0 0 0 0 9 0 992.47158 Q59EC0;D3DV75;H0YCK3;A0A024DAK3;P55265;B7Z8Y3 Q59EC0 755 763 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.0074731 67.507 2 0.45756 0.57966 14.856 2 Median 0.45756 0.57966 14.856 2 0 Median NaN NaN NaN 0 0 Median 16127000 11844000 4283300 16127000 11844000 4283300 0 0 0 10800 1552 11088 38671;38672 58057;58058 58058 2 SHGIDLDHNR SGKKKTFKDVGNLLRSHGIDLDHNRFLILQ GNLLRSHGIDLDHNRFLILQGEVEQIAMMK R S H N R F 0 1 1 2 0 0 0 1 2 1 1 0 0 0 0 1 0 0 0 0 0 0 10 0 1162.5479 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9J578;C9JVD8 Q9NTJ3 215 224 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 5.0374E-46 209.6 8 0.6693 0.91094 7.1047 8 Median 0.6693 0.91094 7.1047 8 0 Median NaN NaN NaN 0 0 Median 781880000 465870000 316010000 781880000 465870000 316010000 0 0 0 10801 1760 11089 38673;38674;38675;38676;38677;38678;38679;38680 58059;58060;58061;58062;58063;58064;58065;58066;58067;58068;58069;58070;58071;58072 58067 14 SHILPHPVVVADLLK PLSRAEAAGLIGWLKSHILPHPVVVADLLK SHILPHPVVVADLLKDSAVRSSIFRLYSRL K S H L K D 1 0 0 1 0 0 0 0 2 1 3 1 0 0 2 1 0 0 0 3 0 0 15 0 1636.9665 O60287 O60287 2127 2141 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 3 3.5308E-05 63.894 1 1 0.71362 0.91302 NaN 1 Median 0.71362 0.91302 NaN 1 0 Median NaN NaN NaN 0 0 Median 16048000 13829000 2219900 5237900 3018100 2219900 10810000 10810000 0 10802 1190 11090 38681;38682 58073;58074;58075 58073 3 SHISDQSPLSSK CGREKSGIQPLCPERSHISDQSPLSSKRKA PERSHISDQSPLSSKRKALEESESSQLISP R S H S K R 0 0 0 1 0 1 0 0 1 1 1 1 0 0 1 5 0 0 0 0 0 0 12 0 1284.631 P42166 P42166 345 356 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2 7.1418E-16 172.21 3 2 1.2761 1.7436 47.079 3 Median 0.76668 0.96988 NaN 1 0 Median 1.5335 2.0715 24.37 2 0 Median 13692000 8580400 5111500 7036900 5707800 1329100 6654900 2872500 3782400 10803 1335 11091 38683;38684;38685;38686;38687 58076;58077;58078;58079;58080;58081;58082 58078 7 SHLFFTAGK FAHDDSVMYLQFVPKSHLFFTAGKDHKIKQ LQFVPKSHLFFTAGKDHKIKQWDADKFEHI K S H G K D 1 0 0 0 0 0 0 1 1 0 1 1 0 2 0 1 1 0 0 0 0 0 9 0 1006.5236 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 645 653 WDR3 WD repeat-containing protein 3 yes no 2 0.0018575 104.44 3 2 0.7519 1.0332 8.3983 5 Median 0.8304 1.0453 11.624 3 0 Median 0.68378 1.0321 0.15592 2 0 Median 153940000 85866000 68079000 117610000 63543000 54070000 36331000 22323000 14008000 10804 1576 11092 38688;38689;38690;38691;38692 58083;58084;58085;58086;58087;58088;58089;58090;58091 58087 9 SHLLNCCPHDVLSGTR TTRQRIKFSDDRVCKSHLLNCCPHDVLSGT HLLNCCPHDVLSGTRMDLGECLKVHDLALR K S H T R M 0 1 1 1 2 0 0 1 2 0 3 0 0 0 1 2 1 0 0 1 0 0 16 0 1864.8672 A0A0A6YYJ8;Q9Y383 A0A0A6YYJ8 104 119 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes no 3 0.0046889 105.53 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11200000 2896100 8304000 11200000 2896100 8304000 0 0 0 10805 409 11093 38693;38694;38695 58092;58093;58094 58094 3 SHLLSSSDAEGNYRDSLETLPSTK VIMEDFNERNSSETKSHLLSSSDAEGNYRD EGNYRDSLETLPSTKESDSTQTTTPSASCP K S H T K E 1 1 1 2 0 0 2 1 1 0 4 1 0 0 1 6 2 0 1 0 0 0 24 1 2606.246 E7ETD6;Q12830;F5GXF5 E7ETD6 1472 1495 BPTF Nucleosome-remodeling factor subunit BPTF yes no 3 8.0689E-07 79.383 3 0.68291 0.91635 14.694 3 Median 0.68291 0.91635 14.694 3 0 Median NaN NaN NaN 0 0 Median 16913000 8898100 8014500 16913000 8898100 8014500 0 0 0 10806 1015 11094 38696;38697;38698 58095;58096;58097;58098 58095 4 SHLMSTVR KLLKFWMTGLSKTYKSHLMSTVRSPTASES GLSKTYKSHLMSTVRSPTASESRN______ K S H V R S 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 2 1 0 0 1 0 0 8 0 929.47529 Q8NFG4 Q8NFG4 563 570 FLCN Folliculin yes yes 2 0.021203 47.067 1 0.76061 1.0189 NaN 1 Median 0.76061 1.0189 NaN 1 0 Median NaN NaN NaN 0 0 Median 5949900 3246300 2703600 5949900 3246300 2703600 0 0 0 10807 1655 11095 38699 58099 58099 733 1 SHLNLDDRR KSKKELKREARNLLKSHLNLDDRRWSMQNF ARNLLKSHLNLDDRRWSMQNFSPQCSIVLL K S H R R W 0 2 1 2 0 0 0 0 1 0 2 0 0 0 0 1 0 0 0 0 0 0 9 1 1124.5687 Q5SY16 Q5SY16 201 209 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 yes yes 3 0.014329 61.679 1 0.4127 0.56274 NaN 1 Median 0.4127 0.56274 NaN 1 0 Median NaN NaN NaN 0 0 Median 3184000 2288600 895430 3184000 2288600 895430 0 0 0 10808 1566 11096 38700 58100 58100 1 SHRVPLDVACAR LDAQLSTGGIVDPSKSHRVPLDVACARGCL PSKSHRVPLDVACARGCLDEETSRALSAPR K S H A R G 2 2 0 1 1 0 0 0 1 0 1 0 0 0 1 1 0 0 0 2 0 0 12 1 1379.7092 Q15149;D3DWL0 Q15149 3286 3297 PLEC;PLEC1 Plectin yes no 3 3.7433E-05 67.234 3 0.68264 0.91504 9.3113 3 Median 0.68264 0.91504 9.3113 3 0 Median NaN NaN NaN 0 0 Median 57863000 36233000 21630000 57863000 36233000 21630000 0 0 0 10809 1507 11097 38701;38702;38703 58101;58102;58103;58104;58105 58105 5 SHSAPSEVGFSDAR ERNSHAPPAETIRWKSHSAPSEVGFSDARH KSHSAPSEVGFSDARHVTVRNAWKSRRDLK K S H A R H 2 1 0 1 0 0 1 1 1 0 0 0 0 1 1 4 0 0 0 1 0 0 14 0 1445.6535 A0A024RAC0;Q86V48 A0A024RAC0 903 916 LUZP1 Leucine zipper protein 1 yes no 2 0.02388 41.399 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1533900 0 1533900 1533900 0 1533900 0 0 0 10810 238 11098 38704 58106 58106 1 SHSIFLINVK NRHVAVTNMNEHSSRSHSIFLINVKQENTQ EHSSRSHSIFLINVKQENTQTEQKLSGKLY R S H V K Q 0 0 1 0 0 0 0 0 1 2 1 1 0 1 0 2 0 0 0 1 0 0 10 0 1156.6604 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;M1V490;M1VPF9;M1V481;M1VPF7;M1VRN0;M1VKI9;M1VE89;Q6P164;Q2TA90;Q66K46 V9HW29 204 213 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5B-RET(NM_020630)_K22;R12;KIF5B-RET(NM_020975)_K22;R12;KIF5B-ALK_K17;A20;KIF5B-RET(NM_020630)_K15;R12;KIF5B-RET(NM_020975)_K15;R12;KIF5B-RET(NM_020630)_K16;R12;KIF5B-RET(NM_020975)_K16;R12 Kinesin-like protein;Kinesin-1 heavy chain yes no 2 0.012762 58.433 1 1 0.66583 0.8243 NaN 1 Median 0.66583 0.8243 NaN 1 0 Median NaN NaN NaN 0 0 Median 6206400 2311200 3895200 3946900 2311200 1635700 2259600 0 2259600 10811 978 11099 38705;38706 58107;58108 58108 2 SHSIFSIR NQSFASTHLNQNSSRSHSIFSIRILHLQGE LNQNSSRSHSIFSIRILHLQGEGDIVPKIS R S H I R I 0 1 0 0 0 0 0 0 1 2 0 0 0 1 0 3 0 0 0 0 0 0 8 0 945.50321 O95235 O95235 380 387 KIF20A Kinesin-like protein KIF20A yes yes 2 0.0001667 124.08 2 2 0.48746 0.77801 19.586 3 Median 0.80017 1.09 NaN 1 0 Median 0.47957 0.77645 0.28384 2 0 Median 184030000 124110000 59917000 65933000 44830000 21103000 118090000 79280000 38814000 10812 1215 11100 38707;38708;38709;38710 58109;58110;58111;58112;58113 58110 5 SHSLFLTQK VNHLDNDKSIEYTVKSHSLFLTQKDKEIIP IEYTVKSHSLFLTQKDKEIIPGNLEDPSEF K S H Q K D 0 0 0 0 0 1 0 0 1 0 2 1 0 1 0 2 1 0 0 0 0 0 9 0 1059.5713 Q562F6;B7Z7S9 Q562F6 741 749 SGOL2 Shugoshin-like 2 yes no 2 0.00010953 117.81 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11085000 11085000 0 11085000 11085000 0 0 0 0 10813 1546 11101 38711 58114 58114 1 SHSTEPGLVLTLGQGDVGQLGLGENVMER ADAIPKSKKVKVSHRSHSTEPGLVLTLGQG GDVGQLGLGENVMERKKPALVSIPEDVVQA R S H E R K 0 1 1 1 0 2 3 6 1 0 5 0 1 0 1 2 2 0 0 3 0 0 29 0 2992.4924 Q5T081;A0A0S2Z3I4;A0A0S2Z404;P18754;C9JW69;C9JRH2;C9JMJ4;C9J3R0;C9JQZ4 Q5T081 29 57 RCC1 Regulator of chromosome condensation yes no 3 1.4675E-32 109.98 4 1 1.1374 1.5643 25.589 5 Median 1.1447 1.5734 29.217 4 0 Median 0.90031 1.4625 NaN 1 0 Median 182910000 120880000 62032000 30088000 14774000 15314000 152820000 106110000 46718000 10814 453 11102;11103 38712;38713;38714;38715;38716 58115;58116;58117;58118;58119;58120 58120 157 6 SHSVFNIK KRRIANTHLNRESSRSHSVFNIKLVQAPLD LNRESSRSHSVFNIKLVQAPLDADGDNVLQ R S H I K L 0 0 1 0 0 0 0 0 1 1 0 1 0 1 0 2 0 0 0 1 0 0 8 0 930.49232 H7BYN4;Q02241;H0YME6;H0YKQ5 H7BYN4 301 308 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 5.3013E-05 133.9 1 2 1.1464 1.688 29.161 3 Median 0.94826 1.195 NaN 1 0 Median 1.2698 1.8978 16.565 2 0 Median 29644000 14960000 14683000 11689000 6662400 5027000 17954000 8298000 9656400 10815 1117 11104 38717;38718;38719 58121;58122;58123 58122 3 SHTEEDCTEELFDFLHAR ARERLELCDERVSSRSHTEEDCTEELFDFL EEDCTEELFDFLHARDHCVAHKLFNNLK__ R S H A R D 1 1 0 2 1 0 4 0 2 0 2 0 0 2 0 1 2 0 0 0 0 0 18 0 2234.9539 Q567R0;P07919 Q567R0 55 72 UQCRH Cytochrome b-c1 complex subunit 6, mitochondrial yes no 3 0.00012514 77.13 2 0.78693 1.0567 NaN 1 Median 0.78693 1.0567 NaN 1 0 Median NaN NaN NaN 0 0 Median 16782000 7811400 8970900 16782000 7811400 8970900 0 0 0 10816 1243 11105 38720;38721 58124;58125 58125 2 SHTILLVQPTK ______________________________ ______________________________ M S H T K R 0 0 0 0 0 1 0 0 1 1 2 1 0 0 1 1 2 0 0 1 0 0 11 0 1235.7238 A0A024R6D4;P84090;G3V279 A0A024R6D4 2 12 ERH Enhancer of rudimentary homolog yes no 2 3.2955E-135 285.16 6 2 0.61356 0.85576 5.9336 6 Median 0.64042 0.84176 6.7729 4 0 Median 0.5597 0.88584 2.6435 2 0 Median 754680000 454380000 300300000 556320000 325310000 231000000 198360000 129060000 69297000 10817 159 11106 38722;38723;38724;38725;38726;38727;38728;38729 58126;58127;58128;58129;58130;58131;58132;58133;58134;58135;58136;58137;58138 58129 12 SHTVVIGFGPSELQELGK MIICSEEEQNMDLTKSHTVVIGFGPSELQE VVIGFGPSELQELGKTNLEHTTGQLTTMNR K S H G K T 0 0 0 0 0 1 2 3 1 1 2 1 0 1 1 2 1 0 0 2 0 0 18 0 1896.9945 Q8NG31;E9PPJ1 Q8NG31 793 810 CASC5 Protein CASC5 yes no 3 1.6075E-13 108.97 4 1 0.6182 0.79959 27.278 3 Median 0.61751 0.77684 4.0828 2 0 Median 0.83693 1.2427 NaN 1 0 Median 45748000 31905000 13843000 38318000 27822000 10496000 7430200 4083200 3347000 10818 1656 11107 38730;38731;38732;38733;38734 58139;58140;58141;58142;58143;58144 58142 6 SHVEDGDIAGAPASSPEAPPAEQDPVQLK SDELALVRQQLSEMKSHVEDGDIAGAPASS SPEAPPAEQDPVQLKTQLEWTEAILEDEQT K S H L K T 5 0 0 3 0 2 3 2 1 1 1 1 0 0 5 3 0 0 0 2 0 0 29 0 2911.3836 A0A0A0MRV0;A7BI36;Q9P2E9;F8W7S5;A1A5C4;A0A087WVV2;A1A5C5;B3KSG1;A0A087WU26 A0A0A0MRV0 1263 1291 RRBP1 Ribosome-binding protein 1 yes no 3 2.026E-06 73.435 3 1.5523 1.9525 11.373 3 Median 1.5523 1.9525 11.373 3 0 Median NaN NaN NaN 0 0 Median 15669000 5158700 10510000 15669000 5158700 10510000 0 0 0 10819 390 11108 38735;38736;38737 58145;58146;58147;58148;58149;58150;58151 58146 7 SIAFHSAVSLDPIK EYIPEGEILVITYGRSIAFHSAVSLDPIKS RSIAFHSAVSLDPIKSFEAPATINSASLHP R S I I K S 2 0 0 1 0 0 0 0 1 2 1 1 0 1 1 3 0 0 0 1 0 0 14 0 1483.8035 Q9Y3F4;B0AZV0 Q9Y3F4 205 218 STRAP Serine-threonine kinase receptor-associated protein yes no 3 0.0043998 26.435 1 0.33383 0.4225 NaN 1 Median 0.33383 0.4225 NaN 1 0 Median NaN NaN NaN 0 0 Median 10993000 8445700 2547700 10993000 8445700 2547700 0 0 0 10820 1818 11109 38738 58152 58152 1 SIAFPSIGSGR TVKNCLALADDKKLKSIAFPSIGSGRNGFP KKLKSIAFPSIGSGRNGFPKQTAAQLILKA K S I G R N 1 1 0 0 0 0 0 2 0 2 0 0 0 1 1 3 0 0 0 0 0 0 11 0 1090.5771 O75367;Q59FH0;B4DJC3 O75367 308 318 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2;3 1.7597E-05 106.88 7 2 0.81957 1.1549 2.7486 6 Median 0.84517 1.1549 2.6819 4 0 Median 0.69346 1.1558 3.8718 2 0 Median 3726000000 2034800000 1691200000 2841700000 1552500000 1289300000 884250000 482340000 401920000 10821 1198 11110 38739;38740;38741;38742;38743;38744;38745;38746;38747 58153;58154;58155;58156;58157;58158;58159;58160;58161;58162;58163;58164;58165;58166;58167;58168;58169;58170;58171;58172 58160 20 SIATLAITTLLK ACNLDLENLVTDSNRSIATLAITTLLKTGS SNRSIATLAITTLLKTGSESSIDRLMKQIS R S I L K T 2 0 0 0 0 0 0 0 0 2 3 1 0 0 0 1 3 0 0 0 0 0 12 0 1243.7751 Q9Y678;B3KW21;Q8WUI6;Q9NUP3;B3KND4;Q9H9B7;A0A140VK12;Q9UBF2 Q9Y678 339 350 COPG1;COPG;COPG2 Coatomer subunit gamma-1;Coatomer subunit gamma;Coatomer subunit gamma-2 yes no 2 6.0099E-06 132.32 4 0.40877 0.51872 9.0002 3 Median 0.40877 0.51872 9.0002 3 0 Median NaN NaN NaN 0 0 Median 22999000 16357000 6642500 22999000 16357000 6642500 0 0 0 10822 1832 11111 38748;38749;38750;38751 58173;58174;58175;58176;58177;58178 58177 6 SIAVAEAACPGITDK ENNASRNQAIEELEKSIAVAEAACPGITDK SIAVAEAACPGITDKMVKKLIEKFQKCSAD K S I D K M 4 0 0 1 1 0 1 1 0 2 0 1 0 0 1 1 1 0 0 1 0 0 15 0 1501.7446 Q9NWX4;Q8NBY1;B4E0Y9;Q9P289;Q499L9;Q96SR7 Q9NWX4 261 275 STK26;MST4 Serine/threonine-protein kinase 26 yes no 2 1.0846E-05 109.72 3 0.39726 0.50184 4.6406 2 Median 0.39726 0.50184 4.6406 2 0 Median NaN NaN NaN 0 0 Median 23557000 17199000 6357800 23557000 17199000 6357800 0 0 0 10823 886 11112 38752;38753;38754 58179;58180;58181;58182 58182 4 SICEVLDLER KKEEMLKKFRNAMLKSICEVLDLERSGVNS NAMLKSICEVLDLERSGVNSELVKRILNFL K S I E R S 0 1 0 1 1 0 2 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1232.6071 B4DNW3;P35659;B4DFG0;D6RDA2;H0Y8X0 P35659 159 168 DEK Protein DEK no no 2 3.2775E-05 103.55 1 2 0.4956 0.82153 19.567 3 Median 0.81573 1.1298 NaN 1 0 Median 0.49252 0.8063 2.6465 2 0 Median 321320000 209760000 111560000 103650000 60856000 42799000 217670000 148910000 68763000 10824 1322;843 11113 38755;38756;38757 58183;58184;58185;58186;58187;58188 58185 6 SICTTVLELLDK QLIKDYREKVESELRSICTTVLELLDKYLI ELRSICTTVLELLDKYLIANATNPESKVFY R S I D K Y 0 0 0 1 1 0 1 0 0 1 3 1 0 0 0 1 2 0 0 1 0 0 12 0 1390.7378 P27348;E9PG15;B4DMT8 P27348 92 103 YWHAQ 14-3-3 protein theta yes no 2 3.6173E-06 137.46 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5885900 4409300 1476700 5885900 4409300 1476700 0 0 0 10825 1300 11114 38758;38759 58189;58190 58189 2 SIDGTADDEDEGVPTDQAIR IDTESISALIKQVNKSIDGTADDEDEGVPT ADDEDEGVPTDQAIRAGLELLKVLSFTHPI K S I I R A 2 1 0 5 0 1 2 2 0 2 0 0 0 0 1 1 2 0 0 1 0 0 20 0 2102.924 Q9NTI5;B7Z5S1 Q9NTI5 628 647 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 2 1.6463E-40 183.28 2 0.64384 0.89501 17.883 2 Median 0.64384 0.89501 17.883 2 0 Median NaN NaN NaN 0 0 Median 3807300 2343100 1464200 3807300 2343100 1464200 0 0 0 10826 1759 11115 38760;38761 58191;58192;58193;58194;58195 58193 5 SIDISATIPK FSTDSPRLLASPSSRSIDISATIPKFTNTQ SPSSRSIDISATIPKFTNTQITEHYSTCIK R S I P K F 1 0 0 1 0 0 0 0 0 3 0 1 0 0 1 2 1 0 0 0 0 0 10 0 1043.5863 Q15003;B4DRG7;E9PHA2;A8K4T8;C9J470;C9JZP1 Q15003 92 101 NCAPH Condensin complex subunit 2 yes no 1;2 0.0019288 85.676 5 3 0.64375 0.90982 10.631 7 Median 0.7562 0.9611 10.516 4 0 Median 0.56578 0.90982 8.8397 3 0 Plateau 443130000 266080000 177050000 267820000 151540000 116290000 175310000 114540000 60768000 10827 1500 11116 38762;38763;38764;38765;38766;38767;38768;38769 58196;58197;58198;58199;58200;58201;58202;58203;58204;58205;58206;58207 58200 12 SIDPALSMLIK IKKKESEIEKESQRKSIDPALSMLIKSIKT SQRKSIDPALSMLIKSIKTKTEQFQARKKQ K S I I K S 1 0 0 1 0 0 0 0 0 2 2 1 1 0 1 2 0 0 0 0 0 0 11 0 1186.6631 Q9H501 Q9H501 823 833 ESF1 ESF1 homolog yes yes 2 0.036079 46.001 2 0.87407 1.2958 4.0108 2 Median NaN NaN NaN 0 0 Median 0.87407 1.2958 4.0108 2 0 Median 15702000 8096500 7605600 0 0 0 15702000 8096500 7605600 10828 1734 11117 38770;38771 58208;58209 58209 0 SIDPGLKEDTLEFLIK LQHFDTIYSILHHFRSIDPGLKEDTLEFLI IDPGLKEDTLEFLIKVVSRHSQELPAILDD R S I I K V 0 0 0 2 0 0 2 1 0 2 3 2 0 1 1 1 1 0 0 0 0 0 16 1 1816.9822 B3KMS0;A0PJ76 B3KMS0 72 87 NCAPD2 Condensin complex subunit 1 yes no 3 2.1143E-09 84.842 3 1 0.71542 0.8762 13.128 4 Median 0.74221 0.90833 5.7785 3 0 Median 0.43614 0.70393 NaN 1 0 Median 153270000 94491000 58780000 129690000 78336000 51357000 23578000 16155000 7423100 10829 757 11118 38772;38773;38774;38775 58210;58211;58212;58213;58214;58215;58216 58213 7 SIDSFGQVSHPK GRVARFTCDVETLKKSIDSFGQVSHPKNSY LKKSIDSFGQVSHPKNSYSTRSRCSSVTSV K S I P K N 0 0 0 1 0 1 0 1 1 1 0 1 0 1 1 3 0 0 0 1 0 0 12 0 1300.6412 A0A024R101;Q86XZ4 A0A024R101 364 375 SPATS2 Spermatogenesis-associated serine-rich protein 2 yes no 2 0.0013661 68.893 3 0.6709 0.85483 NaN 1 Median 0.6709 0.85483 NaN 1 0 Median NaN NaN NaN 0 0 Median 5723500 4027500 1696000 5723500 4027500 1696000 0 0 0 10830 46 11119 38776;38777;38778 58217;58218;58219;58220;58221 58218 5 SIDSNPYDTDK CIGTMTIEIDFLQKKSIDSNPYDTDKMAAE LQKKSIDSNPYDTDKMAAEFIQQFNNQAFS K S I D K M 0 0 1 3 0 0 0 0 0 1 0 1 0 0 1 2 1 0 1 0 0 0 11 0 1253.5412 B4DGR3;I3L0N3;B7Z5J7;P46459;B7Z9U2;B4DH19;B4DSK5;I3L0L3 B4DGR3 106 116 NSF Vesicle-fusing ATPase yes no 2 0.030568 45.598 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2522500 2522500 0 2522500 2522500 0 0 0 0 10831 805 11120 38779 58222 58222 1 SIEALLEAGQAR QEARAENSQLTERIRSIEALLEAGQARDAQ RIRSIEALLEAGQARDAQDVQASQAEADQQ R S I A R D 3 1 0 0 0 1 2 1 0 1 2 0 0 0 0 1 0 0 0 0 0 0 12 0 1256.6725 A0A0A0MRV0;A7BI36;Q9P2E9;F8W7S5;A1A5C4;A0A087WVV2;A1A5C5 A0A0A0MRV0 959 970 RRBP1 Ribosome-binding protein 1 yes no 2 0.0033017 86.898 1 2 0.89178 1.2206 104.05 2 Median 0.41669 0.58486 NaN 1 0 Median 1.9085 2.5475 NaN 1 0 Median 11096000 5151100 5945100 3558400 2918600 639780 7537800 2232500 5305300 10832 390 11121 38780;38781;38782 58223;58224;58225 58225 2 SIEAVHEDIR MKDTTLNWKMVDASKSIEAVHEDIRVLSED VDASKSIEAVHEDIRVLSEDAIRTATEKPL K S I I R V 1 1 0 1 0 0 2 0 1 2 0 0 0 0 0 1 0 0 0 1 0 0 10 0 1167.5884 H7C312;H7BZ20;Q6FGU2;Q53F55;P23919 H7C312 141 150 DTYMK Thymidylate kinase yes no 2 0.0018301 98.033 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3120000 936050 2184000 936050 936050 0 2184000 0 2184000 10833 1119 11122 38783;38784;38785 58226;58227;58228 58227 3 SIEGTADDEEEGVSPDTAIR IDSEAISALVKLMNKSIEGTADDEEEGVSP ADDEEEGVSPDTAIRSGLELLKVLSFTHPT K S I I R S 2 1 0 3 0 0 4 2 0 2 0 0 0 0 1 2 2 0 0 1 0 0 20 0 2089.9288 G1UI16;Q29RF7 G1UI16 638 657 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 1.9833E-31 166.64 3 2 0.48222 0.6881 56.763 5 Median 0.36534 0.50905 17.921 3 0 Median 1.0742 1.5316 9.0033 2 0 Median 27419000 14004000 13414000 10608000 6673800 3934600 16810000 7330700 9479800 10834 1076 11123 38786;38787;38788;38789;38790 58229;58230;58231;58232;58233;58234;58235;58236;58237;58238;58239;58240 58229 12 SIEIPRPVDGVEVPGCGK VEDVRDECSKYGLVKSIEIPRPVDGVEVPG IPRPVDGVEVPGCGKIFVEFTSVFDCQKAM K S I G K I 0 1 0 1 1 0 2 3 0 2 0 1 0 0 3 1 0 0 0 3 0 0 18 1 1907.9775 K7ENG2;B5BU25;P26368 K7ENG2 246 263 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 3 0.0056441 41.202 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8450500 8450500 0 8450500 8450500 0 0 0 0 10835 893 11124 38791 58241 58241 1 SIELFYK LLAHCGRPQTECRHKSIELFYKFVPLLPGN PQTECRHKSIELFYKFVPLLPGNRSPNLWL K S I Y K F 0 0 0 0 0 0 1 0 0 1 1 1 0 1 0 1 0 0 1 0 0 0 7 0 898.48002 P78527 P78527 1187 1193 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.035702 86.512 3 0.46671 0.58376 9.774 2 Median 0.46671 0.58376 9.774 2 0 Median NaN NaN NaN 0 0 Median 38485000 28779000 9705500 38485000 28779000 9705500 0 0 0 10836 1427 11125 38792;38793;38794 58242;58243;58244;58245;58246 58244 5 SIFDHIK ASTLVHSVKKEQEFRSIFDHIKLPQASKST VKKEQEFRSIFDHIKLPQASKSTSESFIQH R S I I K L 0 0 0 1 0 0 0 0 1 2 0 1 0 1 0 1 0 0 0 0 0 0 7 0 858.45995 Q6DCA8;E9PK09;E9PQN2;E9PKI6;E9PK91;Q9NYF8;E9PJA7 Q6DCA8 587 593 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2 0.049861 78.616 1 0.51477 0.64386 NaN 1 Median 0.51477 0.64386 NaN 1 0 Median NaN NaN NaN 0 0 Median 12225000 8851000 3374100 12225000 8851000 3374100 0 0 0 10837 1036 11126 38795 58247 58247 1 SIFLFLDR NTCWQDHCRQMIMIRSIFLFLDRTYVLQNS RQMIMIRSIFLFLDRTYVLQNSTLPSIWDM R S I D R T 0 1 0 1 0 0 0 0 0 1 2 0 0 2 0 1 0 0 0 0 0 0 8 0 1009.5597 Q13619;A0A0A0MR50;B2RBV7;K4DI93;Q13620;A0A087WWN2;A6NE76 Q13619 151 158 CUL4A;CUL4B Cullin-4A;Cullin-4B yes no 2 0.014793 65.252 2 0.64888 0.88428 0.29969 2 Median 0.64888 0.88428 0.29969 2 0 Median NaN NaN NaN 0 0 Median 7907200 4545200 3362000 7907200 4545200 3362000 0 0 0 10838 1474 11127 38796;38797 58248;58249;58250 58248 3 SIFQHIQSAQSQR CRDLVHSNKKEQEFRSIFQHIQSAQSQRSP FRSIFQHIQSAQSQRSPSELFAQHIVTIVH R S I Q R S 1 1 0 0 0 4 0 0 1 2 0 0 0 1 0 3 0 0 0 0 0 0 13 0 1528.7746 Q9Y2W1 Q9Y2W1 609 621 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2;3 3.9473E-12 153.49 6 3 0.69106 0.94264 23.786 5 Median 0.55757 0.75589 14.172 3 0 Median 0.8478 1.1847 5.8277 2 0 Median 115540000 84007000 31529000 99323000 73802000 25521000 16214000 10205000 6008400 10839 1809 11128 38798;38799;38800;38801;38802;38803;38804;38805;38806 58251;58252;58253;58254;58255;58256;58257;58258;58259;58260;58261;58262;58263;58264;58265;58266;58267 58254 17 SIFSLDTPEQYQEAFQK GTEGPFVERVTAVWKSIFSLDTPEQYQEAF FSLDTPEQYQEAFQKLQNIKYPSATNNTPA K S I Q K L 1 0 0 1 0 3 2 0 0 1 1 1 0 2 1 2 1 0 1 0 0 0 17 0 2029.9633 B7ZLC9;Q8TEQ6 B7ZLC9 1165 1181 GEMIN5 Gem-associated protein 5 yes no 2 1.6092E-10 166.24 4 0.5137 0.65218 51.171 3 Median 0.5137 0.65218 51.171 3 0 Median NaN NaN NaN 0 0 Median 17524000 12930000 4593700 17524000 12930000 4593700 0 0 0 10840 924 11129 38807;38808;38809;38810 58268;58269;58270;58271;58272 58269 5 SIFTGLMIDPR NLEASAVIQGLVKDRSIFTGLMIDPRTKAL VKDRSIFTGLMIDPRTKALVLNGKPGHLQF R S I P R T 0 1 0 1 0 0 0 1 0 2 1 0 1 1 1 1 1 0 0 0 0 0 11 0 1248.6536 A8K330;Q8IWA0 A8K330 335 345 WDR75 WD repeat-containing protein 75 yes no 2 0.0026336 55.567 1 0.60256 0.93236 NaN 1 Median NaN NaN NaN 0 0 Median 0.60256 0.93236 NaN 1 0 Median 25698000 17027000 8671700 0 0 0 25698000 17027000 8671700 10841 588 11130 38811 58273;58274 58274 201 2 SIGEYDVLR PPDVLRWVELAKLYRSIGEYDVLRGIFTSE LAKLYRSIGEYDVLRGIFTSEIGTKQITQS R S I L R G 0 1 0 1 0 0 1 1 0 1 1 0 0 0 0 1 0 0 1 1 0 0 9 0 1050.5346 P78527 P78527 2932 2940 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0040585 101.54 2 1 0.50259 0.66967 103.9 3 Median 0.49124 0.6616 1.7148 2 0 Median 2.5046 4.0001 NaN 1 0 Median 78403000 42683000 35721000 45345000 28997000 16348000 33058000 13685000 19373000 10842 1427 11131 38812;38813;38814 58275;58276;58277;58278;58279 58275 5 SIGSAVDQGNESIVAK RQFVDGPPGPVKKTRSIGSAVDQGNESIVA IGSAVDQGNESIVAKTTVTVPNDGGPIEAV R S I A K T 2 0 1 1 0 1 1 2 0 2 0 1 0 0 0 3 0 0 0 2 0 0 16 0 1573.7948 B2RE34;A0A024R136;Q9H0H5;F8VRD2;F8W1E5 B2RE34 203 218 RACGAP1 Rac GTPase-activating protein 1 yes no 2 7.5069E-09 96.551 1 3 1.2377 1.5622 NaN 1 Median 1.2377 1.5622 NaN 1 0 Median NaN NaN NaN 0 0 Median 41654000 26190000 15463000 10542000 4031000 6511300 31111000 22159000 8952000 10843 49 11132 38815;38816;38817;38818 58280;58281;58282;58283;58284 58280 5 SIGVPIK ______________________________ ______________________________ M S I I K V 0 0 0 0 0 0 0 1 0 2 0 1 0 0 1 1 0 0 0 1 0 0 7 0 712.44833 P62318;H3BT13 P62318 2 8 SNRPD3 Small nuclear ribonucleoprotein Sm D3 yes no 1 0.018862 77.984 1 0.77066 0.97901 NaN 1 Median 0.77066 0.97901 NaN 1 0 Median NaN NaN NaN 0 0 Median 12712000 8078700 4633200 12712000 8078700 4633200 0 0 0 10844 1409 11133 38819 58285 58285 1 SIHFSSPVFTSR ______________________________ ______________________________ M S I S R S 0 1 0 0 0 0 0 0 1 1 0 0 0 2 1 4 1 0 0 1 0 0 12 0 1363.6884 CON__P08729;CON__Q3KNV1;P08729;B3KY79 CON__Q3KNV1 2 13 KRT7 Keratin, type II cytoskeletal 7 no no 2 0.00097784 126.71 4 0.41293 0.55728 30.905 2 Median 0.41293 0.55728 30.905 2 0 Median NaN NaN NaN 0 0 Median 81093000 65829000 15263000 81093000 65829000 15263000 0 0 0 + 10845 968;957 11134 38820;38821;38822;38823 58286;58287;58288;58289;58290 58286 5 SIHLACTAGIFDAYVPPEGDAR ARKAGLVIPPEKSDRSIHLACTAGIFDAYV AGIFDAYVPPEGDARISSLSKEGLIERTER R S I A R I 4 1 0 2 1 0 1 2 1 2 1 0 0 1 2 1 1 0 1 1 0 0 22 0 2359.1267 A0A0G2JMS5;A0A087WU62;A0A087X2D5;B4DEF8;Q9BRJ2 A0A0G2JMS5 75 96 MRPL45 39S ribosomal protein L45, mitochondrial yes no 3 4.3801E-05 76.492 2 0.38928 0.54139 NaN 1 Median 0.38928 0.54139 NaN 1 0 Median NaN NaN NaN 0 0 Median 5248900 4526400 722500 5248900 4526400 722500 0 0 0 10846 340 11135 38824;38825 58291;58292 58292 2 SIIEGPIIK PRGEHTLQVKAIYNKSIIEGPIIKLMILPD KAIYNKSIIEGPIIKLMILPDPEKPVRLNV K S I I K L 0 0 0 0 0 0 1 1 0 4 0 1 0 0 1 1 0 0 0 0 0 0 9 0 968.59063 A6NHR9;J3KTL8 A6NHR9 1350 1358 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.027645 74.255 2 0.72065 0.90725 5.8484 2 Median 0.72065 0.90725 5.8484 2 0 Median NaN NaN NaN 0 0 Median 12229000 7367800 4861100 12229000 7367800 4861100 0 0 0 10847 568 11136 38826;38827 58293;58294 58293 2 SIILEGFK ______________________________ ______________________________ K S I F K S 0 0 0 0 0 0 1 1 0 2 1 1 0 1 0 1 0 0 0 0 0 0 8 0 905.52222 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q05D74;Q6P712 A0A024R158 5 12 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.01112 81.191 4 1 0.69889 0.98384 9.275 5 Median 0.71907 0.94355 7.8071 4 0 Median 0.69889 1.1003 NaN 1 0 Median 502580000 293940000 208640000 437360000 257540000 179810000 65228000 36396000 28832000 10848 50 11137 38828;38829;38830;38831;38832 58295;58296;58297;58298;58299;58300;58301;58302;58303 58298 9 SIITYVSSLYDAMPR LLDPEDVDVPQPDEKSIITYVSSLYDAMPR SIITYVSSLYDAMPRVPDVQDGVRANELQL K S I P R V 1 1 0 1 0 0 0 0 0 2 1 0 1 0 1 3 1 0 2 1 0 0 15 0 1714.86 Q15149;E9PMV1 Q15149 387 401 PLEC Plectin yes no 2 0.0056768 99.215 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1322700 1322700 0 1322700 1322700 0 0 0 0 10849 1507 11138 38833;38834 58304;58305 58304 2 SILGLGQARPLEFLR APRALSLLSLPPKKRSILGLGQARPLEFLR SILGLGQARPLEFLRTCYGGSFLVHESFLY R S I L R T 1 2 0 0 0 1 1 2 0 1 4 0 0 1 1 1 0 0 0 0 0 0 15 1 1668.9675 Q4VC44;I3L188 Q4VC44 261 275 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 3 0.00038992 71.548 2 2 0.49638 0.6869 38.842 4 Median 0.6489 0.87012 4.3317 2 0 Median 0.31854 0.46733 25.364 2 0 Median 43247000 29201000 14046000 14257000 8270300 5987000 28990000 20931000 8058700 10850 1536 11139 38835;38836;38837;38838 58306;58307;58308;58309;58310;58311 58311 6 SILHQLTASLAVAEASLR LEQMRTKLSSLATAKSILHQLTASLAVAEA HQLTASLAVAEASLRFEHRDLHWGNVLLKK K S I L R F 4 1 0 0 0 1 1 0 1 1 4 0 0 0 0 3 1 0 0 1 0 0 18 0 1879.0527 A0PJ70;A8K9K0;Q8TF76 A0PJ70 627 644 GSG2 Serine/threonine-protein kinase haspin yes no 3 1.3572E-07 110.26 2 0.99651 1.369 NaN 1 Median 0.99651 1.369 NaN 1 0 Median NaN NaN NaN 0 0 Median 2626800 1971500 655270 2626800 1971500 655270 0 0 0 10851 533 11140 38839;38840 58312;58313;58314 58313 3 SILLATDVASR SKRLGSLNKFKAKARSILLATDVASRGLDI AKARSILLATDVASRGLDIPHVDVVVNFDI R S I S R G 2 1 0 1 0 0 0 0 0 1 2 0 0 0 0 2 1 0 0 1 0 0 11 0 1144.6452 Q53GJ1;A0A024RAS3;Q9H0S4;Q7Z4B1 Q53GJ1 308 318 hCG_27698;DDX47;MST162 Probable ATP-dependent RNA helicase DDX47 yes no 2 8.3351E-06 137.05 2 2 0.65439 0.96075 38.181 4 Median 0.99143 1.3531 7.6047 2 0 Median 0.44701 0.70216 3.5233 2 0 Median 146930000 83975000 62956000 85186000 42625000 42561000 61745000 41350000 20395000 10852 249 11141 38841;38842;38843;38844 58315;58316;58317;58318;58319;58320;58321;58322 58318 8 SILLDMATRPAGQNLQGIEDK DGTARIWQFKRREWKSILLDMATRPAGQNL ATRPAGQNLQGIEDKITKMKVTMVAWDRHD K S I D K I 2 1 1 2 0 2 1 2 0 2 3 1 1 0 1 1 1 0 0 0 0 0 21 1 2269.1736 Q8WWQ0 Q8WWQ0 401 421 PHIP PH-interacting protein yes yes 3 1.7188E-05 53.278 4 1 1.2542 1.8081 34.825 4 Median 1.5736 2.1023 41.932 3 0 Median 0.99962 1.555 NaN 1 0 Median 35585000 15381000 20204000 29731000 13128000 16603000 5854500 2253200 3601300 10853 1668 11142;11143 38845;38846;38847;38848;38849 58323;58324;58325;58326;58327;58328;58329;58330 58328 744 8 SILLSVPLLVVDNK LTTVGKFEEAVEKFRSILLSVPLLVVDNKQ RSILLSVPLLVVDNKQEIAEAQQLITICRE R S I N K Q 0 0 1 1 0 0 0 0 0 1 4 1 0 0 1 2 0 0 0 3 0 0 14 0 1508.9178 P53621 P53621 1031 1044 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.0010671 54.198 1 0.48805 0.60442 NaN 1 Median 0.48805 0.60442 NaN 1 0 Median NaN NaN NaN 0 0 Median 2685800 1887500 798270 2685800 1887500 798270 0 0 0 10854 1371 11144 38850 58331;58332 58331 2 SILNADVAELLVVEK AYVYEVGPGPGGITRSILNADVAELLVVEK SILNADVAELLVVEKDTRFIPGLQMLSDAA R S I E K D 2 0 1 1 0 0 2 0 0 1 3 1 0 0 0 1 0 0 0 3 0 0 15 0 1611.9083 E5KTM5;A8K0B9;Q8WVM0 E5KTM5 72 86 TFB1M Dimethyladenosine transferase 1, mitochondrial yes no 2 0.0069495 93.649 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 419830 419830 0 419830 419830 0 0 0 0 10855 576 11145 38851 58333 58333 1 SILREPTFR PFLPASTAPMQGKRKSILREPTFRWTSLKH MQGKRKSILREPTFRWTSLKHSRSEPQYFS K S I F R W 0 2 0 0 0 0 1 0 0 1 1 0 0 1 1 1 1 0 0 0 0 0 9 1 1117.6244 Q03164;E9PR05;Q9UMN6 Q03164 610 618 KMT2A;KMT2B Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180;Histone-lysine N-methyltransferase 2B no no 3 0.0016302 73.985 2 0.86145 1.1203 6.8201 2 Median 0.86145 1.1203 6.8201 2 0 Median NaN NaN NaN 0 0 Median 12405000 5917700 6487000 12405000 5917700 6487000 0 0 0 10856 1438;1794 11146 38852;38853 58334;58335 58335 2 SILSPGGSCGPIK KKHVGGRVMVTDADRSILSPGGSCGPIKVK DRSILSPGGSCGPIKVKTEPTEDSGISLEM R S I I K V 0 0 0 0 1 0 0 3 0 2 1 1 0 0 2 3 0 0 0 0 0 0 13 0 1271.6544 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;X5D7Q9 X5D2J9 207 219 GTF2I General transcription factor II-I yes no 2 1.4124E-05 84.17 3 0.45695 0.57729 1.8713 2 Median 0.45695 0.57729 1.8713 2 0 Median NaN NaN NaN 0 0 Median 15512000 10548000 4963600 15512000 10548000 4963600 0 0 0 10857 651 11147 38854;38855;38856 58336;58337;58338 58338 3 SILTQIDHILMDK LASGKLGKGFGAFERSILTQIDHILMDKER ERSILTQIDHILMDKERLLRRTQTKRSVYR R S I D K E 0 0 0 2 0 1 0 0 1 3 2 1 1 0 0 1 1 0 0 0 0 0 13 0 1525.8174 Q9NY61;A0A087WWS8 Q9NY61 391 403 AATF Protein AATF yes no 2;3 0.00010586 73.273 2 2 0.76807 1.1994 0.77197 2 Median NaN NaN NaN 0 0 Median 0.76807 1.1994 0.77197 2 0 Median 119780000 65797000 53988000 509000 0 509000 119280000 65797000 53479000 10858 1767 11148;11149 38857;38858;38859;38860 58339;58340;58341;58342 58341 817 4 SILTSLLLNSSQSSTSEETVLR ESDEESRPQNANYPRSILTSLLLNSSQSST LNSSQSSTSEETVLRSDAPDSTGDQPGLHQ R S I L R S 0 1 1 0 0 1 2 0 0 1 5 0 0 0 0 7 3 0 0 1 0 0 22 0 2364.2384 A0A024R784;O15164;B4DYZ9 A0A024R784 724 745 TRIM24 Transcription intermediary factor 1-alpha yes no 2 0.024018 25.448 1 0.78557 1.0486 NaN 1 Median 0.78557 1.0486 NaN 1 0 Median NaN NaN NaN 0 0 Median 1993700 1308600 685190 1993700 1308600 685190 0 0 0 10859 171 11150 38861 58343 58343 1 SILVPNEELSMVMSSK AKSENVDVGKPALGKSILVPNEELSMVMSS ILVPNEELSMVMSSKKKLTKKTESQSQKRS K S I S K K 0 0 1 0 0 0 2 0 0 1 2 1 2 0 1 4 0 0 0 2 0 0 16 0 1762.8845 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 2030 2045 AHCTF1 Protein ELYS yes no 2 0.0018998 40.475 1 0.51273 0.77446 NaN 1 Median NaN NaN NaN 0 0 Median 0.51273 0.77446 NaN 1 0 Median 14269000 9264800 5004100 0 0 0 14269000 9264800 5004100 10860 1670 11151 38862 58344 58344 748;749 1 SILVSPTGPSR GLNRNMTAEFKKTDKSILVSPTGPSRVAFD KTDKSILVSPTGPSRVAFDPEQKPLHGVLK K S I S R V 0 1 0 0 0 0 0 1 0 1 1 0 0 0 2 3 1 0 0 1 0 0 11 0 1112.619 Q14684 Q14684 702 712 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 0.0066734 53.327 1 0.62469 0.84631 NaN 1 Median 0.62469 0.84631 NaN 1 0 Median NaN NaN NaN 0 0 Median 8369500 5039900 3329700 8369500 5039900 3329700 0 0 0 10861 1493 11152 38863 58345;58346 58346 2 SINAFR GETTHTDKVPGGEDKSINAFRETAKQKLDP DKVPGGEDKSINAFRETAKQKLDPAASVTG K S I F R E 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 6 0 706.37622 P46013 P46013 1430 1435 MKI67 Antigen KI-67 yes yes 2 0.034817 101.72 2 1 0.87388 1.1998 17.647 3 Median 0.85513 1.1814 2.1899 2 0 Median 0.99774 1.6019 NaN 1 0 Median 234870000 119160000 115710000 166050000 86460000 79585000 68826000 32699000 36127000 10862 1342 11153 38864;38865;38866 58347;58348;58349 58349 3 SINNNTAICVEGK LKKNQVVQLQEWMIKSINNNTAICVEGKLI IKSINNNTAICVEGKLIDVTNIYWHSNVII K S I G K L 1 0 3 0 1 0 1 1 0 2 0 1 0 0 0 1 1 0 0 1 0 0 13 0 1418.6824 Q6P0N0;G5E9K5;H7C1S6 Q6P0N0 392 404 MIS18BP1 Mis18-binding protein 1 yes no 2 5.6594E-08 96.229 2 0.76182 0.96401 0.70717 2 Median 0.76182 0.96401 0.70717 2 0 Median NaN NaN NaN 0 0 Median 11270000 5870600 5399400 11270000 5870600 5399400 0 0 0 10863 1588 11154 38867;38868 58350;58351;58352 58352 2 SINPDEAVAYGAAVQAAILMGDK QKLLQDFFNGRDLNKSINPDEAVAYGAAVQ AYGAAVQAAILMGDKSENVQDLLLLDVAPL K S I D K S 6 0 1 2 0 1 1 2 0 2 1 1 1 0 1 1 0 0 1 2 0 0 23 0 2303.1467 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DI39;B4DWK5;B4DNT8;B4DFN9;B4DVU9;B4E1S9;B4E388;V9GZ37;B3KTT5;B4E1T6;B4DNX1;B4DXY3;Q53FA3;B4DI54;P34931 A8K5I0 362 384 HEL-S-103;HSPA1B;HSPA1A;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like no no 2 2.6716E-06 91.401 4 0.85756 1.0887 15.986 4 Median 0.85756 1.0887 15.986 4 0 Median NaN NaN NaN 0 0 Median 12164000 7017200 5146600 12164000 7017200 5146600 0 0 0 10864 439;810 11155;11156 38869;38870;38871;38872 58353;58354;58355;58356;58357;58358 58353 152 5 SINPDEAVAYGAAVQAAILSGDK QKLLQDFFNGKELNKSINPDEAVAYGAAVQ AYGAAVQAAILSGDKSENVQDLLLLDVTPL K S I D K S 6 0 1 2 0 1 1 2 0 2 1 1 0 0 1 2 0 0 1 2 0 0 23 0 2259.1383 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;Q53HF2;E9PNE6;B4E1Q1;A8K7Q2 V9HW22 362 384 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 2 1.0462E-72 216.53 5 0.60401 0.78014 19.175 5 Plateau 0.60401 0.78014 19.175 5 0 Plateau NaN NaN NaN 0 0 Median 334170000 211140000 123030000 334170000 211140000 123030000 0 0 0 10865 1253 11157 38873;38874;38875;38876;38877 58359;58360;58361;58362;58363;58364;58365;58366;58367;58368 58363 9 SINPLGGFVHYGEVTNDFVMLK LIKNNASTDYDLSDKSINPLGGFVHYGEVT FVHYGEVTNDFVMLKGCVVGTKKRVLTLRK K S I L K G 0 0 2 1 0 0 1 3 1 1 2 1 1 2 1 1 1 0 1 3 0 0 22 0 2436.2148 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;B3KS36;Q49AJ9;Q9BT63 P39023 313 334 RPL3;rpl3 60S ribosomal protein L3 yes no 3 1.5719E-23 101.94 8 4 0.74252 0.95826 7.512 12 Median 0.75216 0.98087 6.2109 8 0 Median 0.58756 0.91634 8.6538 4 0 Median 1154100000 700770000 453360000 577310000 329350000 247950000 576820000 371410000 205400000 10866 1330 11158;11159 38878;38879;38880;38881;38882;38883;38884;38885;38886;38887;38888;38889 58369;58370;58371;58372;58373;58374;58375;58376;58377;58378;58379;58380;58381;58382;58383;58384;58385;58386;58387;58388 58373 557 20 SINQQSGAHVELQR DKCGLVIGKGGENIKSINQQSGAHVELQRN KSINQQSGAHVELQRNPPPNSDPNLRRFTI K S I Q R N 1 1 1 0 0 3 1 1 1 1 1 0 0 0 0 2 0 0 0 1 0 0 14 0 1565.791 A0A024R8A7;Q96I24 A0A024R8A7 379 392 hCG_31253;FUBP3 Far upstream element-binding protein 3 yes no 2;3 1.4184E-08 143.55 6 0.32478 0.43286 31.342 4 Median 0.32478 0.43286 31.342 4 0 Median NaN NaN NaN 0 0 Median 30291000 22269000 8021900 30291000 22269000 8021900 0 0 0 10867 194 11160 38890;38891;38892;38893;38894;38895 58389;58390;58391;58392;58393;58394 58391 6 SIPALVR TLGKLCLQHEDLAKKSIPALVRELEVCEDV QHEDLAKKSIPALVRELEVCEDVAVRNNVI K S I V R E 1 1 0 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 1 0 0 7 0 754.47012 P42695;G3V1A9;Q96FA6 P42695 941 947 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.04297 53.71 1 0.75954 1.005 NaN 1 Median 0.75954 1.005 NaN 1 0 Median NaN NaN NaN 0 0 Median 9401800 4901900 4499900 9401800 4901900 4499900 0 0 0 10868 1338 11161 38896 58395 58395 1 SIPSLVDGFKPGQR INKELILFSNSDNERSIPSLVDGFKPGQRK RSIPSLVDGFKPGQRKVLFTCFKRNDKREV R S I Q R K 0 1 0 1 0 1 0 2 0 1 1 1 0 1 2 2 0 0 0 1 0 0 14 1 1499.8096 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80 Q71UH4 707 720 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2;3 1.8849E-06 125.82 7 2 0.53954 0.76008 12.049 9 Median 0.53954 0.70176 7.9121 7 0 Median 0.53368 0.8936 1.2653 2 0 Median 233990000 146710000 87273000 191240000 118570000 72671000 42742000 28140000 14602000 10869 1437 11162 38897;38898;38899;38900;38901;38902;38903;38904;38905 58396;58397;58398;58399;58400;58401;58402;58403;58404;58405;58406 58402 11 SIPSMVDGLKPGQR INKELILFSNSDNERSIPSMVDGLKPGQRK RSIPSMVDGLKPGQRKVLFTCFKRNDKREV R S I Q R K 0 1 0 1 0 1 0 2 0 1 1 1 1 0 2 2 0 0 0 1 0 0 14 1 1483.7817 P11388 P11388 714 727 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 0.00037874 82.489 8 7 0.80182 1.1796 7.6412 15 Median 0.86626 1.1419 8.6256 8 0 Median 0.72936 1.2055 6.6274 7 0 Median 408150000 224480000 183660000 176250000 92320000 83934000 231890000 132160000 99730000 10870 1256 11163;11164 38906;38907;38908;38909;38910;38911;38912;38913;38914;38915;38916;38917;38918;38919;38920 58407;58408;58409;58410;58411;58412;58413;58414;58415;58416;58417;58418;58419;58420;58421;58422;58423;58424 58420 519 16 SIPTLISR AEYGRLGLGEGAEEKSIPTLISRLPAVSSV GEGAEEKSIPTLISRLPAVSSVACGASVGY K S I S R L 0 1 0 0 0 0 0 0 0 2 1 0 0 0 1 2 1 0 0 0 0 0 8 0 885.52837 Q5T081;A0A0S2Z3I4;A0A0S2Z404;P18754;C9JW69 Q5T081 336 343 RCC1 Regulator of chromosome condensation yes no 2 0.030452 51.335 1 0.48572 0.73812 NaN 1 Median NaN NaN NaN 0 0 Median 0.48572 0.73812 NaN 1 0 Median 19283000 12602000 6680700 0 0 0 19283000 12602000 6680700 10871 453 11165 38921 58425 58425 1 SIQEELQQLR VRREEAAVDAQQQKRSIQEELQQLRQSSEA QQQKRSIQEELQQLRQSSEAEIQAKARQAE R S I L R Q 0 1 0 0 0 3 2 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1242.6568 Q15149 Q15149 1554 1563 PLEC Plectin yes yes 2 0.018176 53.756 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10872 1507 11166 38922 58426 58426 1 SIQFALR MVVKMLIEKDPSLEKSIQFALRQNLHEIES EKDPSLEKSIQFALRQNLHEIESAGQTWQQ K S I L R Q 1 1 0 0 0 1 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 7 0 833.47594 F8W6A0;B7Z8M9;B7Z695;F8WF16;B7Z615;B7Z8L1;Q8NEY8;F8W0Q9 F8W6A0 209 215 PPHLN1 Periphilin-1 no no 2 0.013191 102.98 3 0.40919 0.55095 5.2325 2 Median 0.40919 0.55095 5.2325 2 0 Median NaN NaN NaN 0 0 Median 25947000 18432000 7515200 25947000 18432000 7515200 0 0 0 10873 913;1066 11167 38923;38924;38925 58427;58428;58429;58430 58428 4 SIQFVDWCPTGFK PKDVNAAIATIKTKRSIQFVDWCPTGFKVG KRSIQFVDWCPTGFKVGINYQPPTVVPGGD R S I F K V 0 0 0 1 1 1 0 1 0 1 0 1 0 2 1 1 1 1 0 1 0 0 13 0 1583.7442 B3KT06;P68363;B3KPS3;A8JZY9;B4DDU2;P68366 B3KT06 305 317 TUBA1B;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-4A chain no no 2 3.1574E-08 101.95 2 3.5794 5.4089 12.232 2 Median NaN NaN NaN 0 0 Median 3.5794 5.4089 12.232 2 0 Median 35911000 8881600 27029000 0 0 0 35911000 8881600 27029000 10874 777;1422 11168 38926;38927 58431;58432;58433;58434 58433 4 SIRPDNMSEYSK EMTKYHSDEYIKFLRSIRPDNMSEYSKQMQ FLRSIRPDNMSEYSKQMQRFNVGEDCPVFD R S I S K Q 0 1 1 1 0 0 1 0 0 1 0 1 1 0 1 3 0 0 1 0 0 0 12 1 1425.6558 Q92769;B3KUJ5;E5RFI6;E5RJ04;E5RGV4;E5RHE7;E5RH52;E5RG37;E5RFP9;H3BM24;Q6IT96;B5BU61;Q13547;Q5TEE2;B4DSK9;B7Z3S4 Q92769 79 90 HDAC2;HDAC1 Histone deacetylase 2;Histone deacetylase;Histone deacetylase 1 no no 2 2.0603E-13 115.14 2 1.1157 1.9738 NaN 1 Median NaN NaN NaN 0 0 Median 1.1157 1.9738 NaN 1 0 Median 35412000 12184000 23229000 0 0 0 35412000 12184000 23229000 10875 1675;894 11169 38928;38929 58435;58436 58436 307 2 SIRPLLEGR IKEMGFTNMTEIQHKSIRPLLEGRDLLAAA TEIQHKSIRPLLEGRDLLAAAKTGSGKTLA K S I G R D 0 2 0 0 0 0 1 1 0 1 2 0 0 0 1 1 0 0 0 0 0 0 9 1 1039.6138 Q4ZG72;A0A024RAH8;Q9NVP1 Q4ZG72 85 93 DDX18 ATP-dependent RNA helicase DDX18 yes no 2;3 1.0124E-05 135.43 5 1 1.0435 1.4326 15.414 6 Median 1.0606 1.4441 8.6229 5 0 Median 0.64567 1.0234 NaN 1 0 Median 392300000 195110000 197190000 356330000 173050000 183280000 35969000 22060000 13908000 10876 242 11170 38930;38931;38932;38933;38934;38935 58437;58438;58439;58440;58441;58442;58443 58439 7 SISDVTFGAGVSYIGTPR EIEHVTKRAISTPEKSISDVTFGAGVSYIG DVTFGAGVSYIGTPRTPSSAKEKIEGRSQG K S I P R T 1 1 0 1 0 0 0 3 0 2 0 0 0 1 1 3 2 0 1 2 0 0 18 0 1825.921 P42695;Q96FA6 P42695 1419 1436 NCAPD3 Condensin-2 complex subunit D3 yes no 2 4.4806E-15 138.31 4 1 0.60631 0.80184 22.681 5 Median 0.64454 0.86513 12.236 4 0 Median 0.35198 0.54918 NaN 1 0 Median 55900000 37061000 18839000 33708000 20316000 13392000 22192000 16745000 5446500 10877 1338 11171 38936;38937;38938;38939;38940 58444;58445;58446;58447;58448;58449;58450;58451 58445 7 SISISVAGGGGGFGAAGGFGGR GGFGSRSLVGLGGTKSISISVAGGGGGFGA GGGGGFGAAGGFGGRGGGFGGGSGFGGGSG K S I G R G 3 1 0 0 0 0 0 10 0 2 0 0 0 2 0 3 0 0 0 1 0 0 22 0 1837.9071 CON__P35908;P35908 CON__P35908 71 92 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2 1.055E-14 116.84 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45002000 45002000 0 45002000 45002000 0 0 0 0 + 10878 964 11172 38941;38942;38943 58452;58453;58454 58454 3 SISISVAR GGFGSRSLVNLGGSKSISISVARGGGRGSG VNLGGSKSISISVARGGGRGSGFGGGYGGG K S I A R G 1 1 0 0 0 0 0 0 0 2 0 0 0 0 0 3 0 0 0 1 0 0 8 0 831.48142 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 75 82 KRT1 Keratin, type II cytoskeletal 1 no no 2 0.00037561 95.541 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 175370000 175370000 0 175370000 175370000 0 0 0 0 + 10879 1113;1114 11173 38944 58455 58455 1 SISLYYTGEK EKTFEEKQGTEIDGRSISLYYTGEKGQNQD EIDGRSISLYYTGEKGQNQDYRGGKNSTWS R S I E K G 0 0 0 0 0 0 1 1 0 1 1 1 0 0 0 2 1 0 2 0 0 0 10 0 1159.5761 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99;Q9BQ02;H7BY16 B3KTP9 381 390 NCL Nucleolin yes no 2 0.0045733 97.431 2 0.79063 1.0015 9.512 2 Median 0.79063 1.0015 9.512 2 0 Median NaN NaN NaN 0 0 Median 98089000 56336000 41753000 98089000 56336000 41753000 0 0 0 10880 119 11174 38945;38946 58456;58457;58458 58458 2 SISVIDSPGILSGEK LNRFMCSQLPNQVLKSISVIDSPGILSGEK SISVIDSPGILSGEKQRISRGYDFCQVLQW K S I E K Q 0 0 0 1 0 0 1 2 0 3 1 1 0 0 1 4 0 0 0 1 0 0 15 0 1500.8035 A8K9B9;A0A024R9N6;Q9H223 A8K9B9 151 165 EHD4 EH domain-containing protein 4 yes no 2 2.9081E-05 107.85 2 0.60487 0.75202 NaN 1 Median 0.60487 0.75202 NaN 1 0 Median NaN NaN NaN 0 0 Median 1207900 768930 439000 1207900 768930 439000 0 0 0 10881 228 11175 38947;38948 58459;58460 58459 2 SITADPLDYR YSDRHYDLNQLLEPRSITADPLDYRLSWHL LLEPRSITADPLDYRLSWHLWEVLRALNYT R S I Y R L 1 1 0 2 0 0 0 0 0 1 1 0 0 0 1 1 1 0 1 0 0 0 10 0 1149.5666 P52948;H7C3P6;H0YDF4 P52948 1514 1523 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.030417 48.283 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10882 1367 11176 38949 58461 58461 1 SITHDIEEK QPTSEERIPKTIEIKSITHDIEEKGVRMKL KTIEIKSITHDIEEKGVRMKLTVIDTPGFG K S I E K G 0 0 0 1 0 0 2 0 1 2 0 1 0 0 0 1 1 0 0 0 0 0 9 0 1070.5244 A0A0S2Z5W9;A0A024R8Q0;A0A0S2Z5A5;A0A024R8V0;Q9UHD8;K7EK18;K7EL40;K7ER52;K7EIE4;K7EQD7;K7EIR4;K7EKN4;K7EN52;K7ENQ5;K7EJZ2;K7ELJ9 A0A0S2Z5W9 111 119 SEPT9 Septin-9 yes no 2 0.016656 83.948 1 0.57117 0.73952 NaN 1 Median 0.57117 0.73952 NaN 1 0 Median NaN NaN NaN 0 0 Median 2138700 1042900 1095800 2138700 1042900 1095800 0 0 0 10883 202 11177 38950 58462 58462 1 SITILSTPEGTSAACK KIDVHRKENAGAAEKSITILSTPEGTSAAC ITILSTPEGTSAACKSILEIMHKEAQDIKF K S I C K S 2 0 0 0 1 0 1 1 0 2 1 1 0 0 1 3 3 0 0 0 0 0 16 0 1634.8185 O00425 O00425 243 258 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 2.1341E-13 147.24 5 1 0.68398 0.86852 11.71 3 Median 0.68398 0.86852 11.71 3 0 Median NaN NaN NaN 0 0 Median 24265000 15652000 8613400 22374000 15652000 6722300 1891100 0 1891100 10884 1167 11178 38951;38952;38953;38954;38955;38956 58463;58464;58465;58466;58467;58468;58469;58470;58471;58472 58465 10 SITVLVEGENTR MQEHSDQVPVGNIPRSITVLVEGENTRIAQ IPRSITVLVEGENTRIAQPGDHVSVTGIFL R S I T R I 0 1 1 0 0 0 2 1 0 1 1 0 0 0 0 1 2 0 0 2 0 0 12 0 1316.6936 B2RBA6;A0A0S2Z4A5;P33993;B3KUD7;B4DDF5;C6EMX8;C9J8M6 B2RBA6 252 263 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 2 1.1003E-09 117.67 4 2 0.36491 0.48414 106.66 3 Median 0.34921 0.46541 5.5817 2 0 Median 2.0796 2.9484 NaN 1 0 Median 54768000 37762000 17007000 39138000 30489000 8649200 15630000 7272900 8357400 10885 464 11179 38957;38958;38959;38960;38961;38962 58473;58474;58475;58476;58477;58478;58479;58480 58477 8 SIVDYKPNLDLLEQQHQLIQEALIFDNK GTLEDQLSHLKQYERSIVDYKPNLDLLEQQ QQHQLIQEALIFDNKHTNYTMEHIRVGWEQ R S I N K H 1 0 2 3 0 4 2 0 1 3 5 2 0 1 1 1 0 0 1 1 0 0 28 1 3323.7402 A0A0S2Z3G9;O43707;Q96BG6;F5GXS2;H7C144;A0A0S2Z3X3;A0A0S2Z3C0 A0A0S2Z3G9 696 723 ACTN4 Alpha-actinin-4 yes no 4 0.00031582 56.774 2 0.82965 1.0229 2.0267 2 Median 0.82965 1.0229 2.0267 2 0 Median NaN NaN NaN 0 0 Median 16647000 8828400 7818700 16647000 8828400 7818700 0 0 0 10886 451 11180 38963;38964 58481;58482;58483 58482 3 SIVFHR CGNKVDIKDRKVKAKSIVFHRKKNLQYYDI IKDRKVKAKSIVFHRKKNLQYYDISAKSNY K S I H R K 0 1 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 1 0 0 6 0 757.42351 B5MDF5;P62826;J3KQE5;F5H018;B4DV51 B5MDF5 152 157 RAN GTP-binding nuclear protein Ran yes no 2 0.03763 101.72 2 0.59348 0.82019 0.88207 2 Median 0.59348 0.82019 0.88207 2 0 Median NaN NaN NaN 0 0 Median 181760000 115670000 66091000 181760000 115670000 66091000 0 0 0 10887 901 11181 38965;38966 58484;58485 58485 2 SIVGEIVR LVAAVSLWATDYGMKSIVGEIVREIGQKCP ATDYGMKSIVGEIVREIGQKCPQELSRDPS K S I V R E 0 1 0 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 0 2 0 0 8 0 871.51272 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00;A0PJ76 B3KMS0 273 280 NCAPD2 Condensin complex subunit 1 yes no 2 0.010275 101.28 4 1 0.67316 0.92349 11.045 5 Median 0.68361 0.9343 3.2889 4 0 Median 0.46456 0.73749 NaN 1 0 Median 263680000 156950000 106730000 217410000 126890000 90521000 46274000 30068000 16206000 10888 757 11182 38967;38968;38969;38970;38971 58486;58487;58488;58489;58490;58491;58492 58486 7 SIYFQPPSFYVSAQDLPHIENGGVAVLTGK VTKTLRFKQWNGKERSIYFQPPSFYVSAQD LPHIENGGVAVLTGKKVVQLDVRDNMVKLN R S I G K K 2 0 1 1 0 2 1 3 1 2 2 1 0 2 3 3 1 0 2 3 0 0 30 0 3233.6397 O95831;Q5RZA0;Q5RZ99 O95831 202 231 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 3 0.0051816 36.67 2 0.61109 0.77707 35.037 2 Median 0.61109 0.77707 35.037 2 0 Median NaN NaN NaN 0 0 Median 13899000 9373800 4525100 13899000 9373800 4525100 0 0 0 10889 1224 11183 38972;38973 58493;58494 58493 2 SIYNLNEDEELTHYGQSLADIEK MKRFALEQQRHHEKKSIYNLNEDEELTHYG EELTHYGQSLADIEKHNDIVDSDSDAEDRG K S I E K H 1 0 2 2 0 1 4 1 1 2 3 1 0 0 0 2 1 0 2 0 0 0 23 0 2680.2504 A8KA74;P78316;E9PFK5 A8KA74 117 139 NOP14 Nucleolar protein 14 yes no 3 3.5908E-48 172.57 4 2 0.99606 1.2573 11.516 6 Median 1.0377 1.3023 4.9274 4 0 Median 0.66273 1.0573 4.6888 2 0 Median 333650000 180360000 153280000 207660000 105410000 102240000 125990000 74950000 51040000 10890 652 11184 38974;38975;38976;38977;38978;38979 58495;58496;58497;58498;58499;58500;58501;58502;58503;58504;58505;58506;58507;58508;58509 58503 15 SIYSLILGQDNAADQSR VSSASWYFLNVFGLRSIYSLILGQDNAADQ YSLILGQDNAADQSRMMQEQMTGAAMAMPA R S I S R M 2 1 1 2 0 2 0 1 0 2 2 0 0 0 0 3 0 0 1 0 0 0 17 0 1849.917 Q9P0I2 Q9P0I2 181 197 EMC3 ER membrane protein complex subunit 3 yes yes 2 8.0977E-09 120.6 1 0.47161 0.68025 NaN 1 Median 0.47161 0.68025 NaN 1 0 Median NaN NaN NaN 0 0 Median 2606100 1677700 928370 2606100 1677700 928370 0 0 0 10891 1776 11185 38980 58510 58510 1 SIYSQIQEQR YPHIKRIARHRHLPKSIYSQIQEQRIMKEA RHLPKSIYSQIQEQRIMKEARRRKEVNRIK K S I Q R I 0 1 0 0 0 3 1 0 0 2 0 0 0 0 0 2 0 0 1 0 0 0 10 0 1250.6255 A0A087WT20;Q9NV06 A0A087WT20 551 560 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2 3.3834E-28 182.76 4 2 1.6089 2.1576 32.28 6 Linear 1.6267 2.2482 27.494 4 0 Linear 0.68003 1.0221 2.5693 2 0 Median 191120000 92247000 98868000 158700000 73631000 85066000 32418000 18616000 13802000 10892 331 11186 38981;38982;38983;38984;38985;38986 58511;58512;58513;58514;58515;58516;58517;58518;58519;58520;58521;58522;58523;58524;58525 58519 15 SIYYITGESK TSLSEYVSRMKETQKSIYYITGESKEQVAN KETQKSIYYITGESKEQVANSAFVERVRKR K S I S K E 0 0 0 0 0 0 1 1 0 2 0 1 0 0 0 2 1 0 2 0 0 0 10 0 1159.5761 A0A024RD80;P08238;B4DMA2;B4DGL0;Q9H6X9;A8K3W9;Q58FF8 A0A024RD80 482 491 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 2 2.7234E-05 100.25 5 0.44496 0.57248 9.3736 3 Median 0.44496 0.57248 9.3736 3 0 Median NaN NaN NaN 0 0 Median 190960000 115300000 75663000 190960000 115300000 75663000 0 0 0 10893 312;598;1551 11187 38987;38988;38989;38990;38991 58526;58527;58528;58529;58530;58531;58532 58532 7 SKAEAESLYQSK IIAEVKAQYEDIAQKSKAEAESLYQSKYEE AQKSKAEAESLYQSKYEELQITAGRHGDSV K S K S K Y 2 0 0 0 0 1 2 0 0 0 1 2 0 0 0 3 0 0 1 0 0 0 12 1 1339.662 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 365 376 KRT1 Keratin, type II cytoskeletal 1 no no 2 1.825E-164 299.29 3 2 0.0050692 0.0071538 2.1048 2 Median 0.0059567 0.0072611 NaN 1 0 Median 0.0043138 0.0070482 NaN 1 0 Median 660120000 658730000 1388100 338640000 337970000 671010 321480000 320760000 717120 + 10894 1113;1114 11188 38992;38993;38994;38995;38996 58533;58534;58535;58536;58537;58538 58533 6 SKEEAEALYHSK IIAEVKAQYEEIAQRSKEEAEALYHSKYEE AQRSKEEAEALYHSKYEELQVTVGRHGDSL R S K S K Y 2 0 0 0 0 0 3 0 1 0 1 2 0 0 0 2 0 0 1 0 0 0 12 1 1390.6729 CON__P35908;P35908 CON__P35908 369 380 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2;3 0.00074829 78.809 5 1.2179 1.4973 NaN 1 Median 1.2179 1.4973 NaN 1 0 Median NaN NaN NaN 0 0 Median 129110000 124990000 4121800 129110000 124990000 4121800 0 0 0 + 10895 964 11189 38997;38998;38999;39000;39001 58539;58540;58541;58542;58543 58543 5 SKEELHQDCLVLATAK KARSLLPLSTSLDHRSKEELHQDCLVLATA KEELHQDCLVLATAKHSRELNEDVSADVEE R S K A K H 2 0 0 1 1 1 2 0 1 0 3 2 0 0 0 1 1 0 0 1 0 0 16 1 1840.9353 B7ZLC9;Q8TEQ6 B7ZLC9 858 873 GEMIN5 Gem-associated protein 5 yes no 3 0.0015397 73.597 1 0.3698 0.45937 NaN 1 Median 0.3698 0.45937 NaN 1 0 Median NaN NaN NaN 0 0 Median 2394600 1584000 810600 2394600 1584000 810600 0 0 0 10896 924 11190 39002 58544 58544 1 SKGESDDFHMDFDSAVAPR SNFEKIVSKAVTSKKSKGESDDFHMDFDSA SDDFHMDFDSAVAPRAKSVRAKKPIKYLEE K S K P R A 2 1 0 4 0 0 1 1 1 0 0 1 1 2 1 3 0 0 0 1 0 0 19 1 2109.9062 P11388 P11388 1491 1509 TOP2A DNA topoisomerase 2-alpha yes yes 3 7.8578E-18 117.29 7 2 0.90391 1.2471 23.549 9 Median 0.91225 1.1949 27.1 7 0 Median 0.76121 1.3072 5.1455 2 0 Median 183700000 98818000 84885000 105230000 54608000 50618000 78477000 44210000 34267000 10897 1256 11191;11192 39003;39004;39005;39006;39007;39008;39009;39010;39011 58545;58546;58547;58548;58549;58550;58551;58552;58553;58554;58555;58556;58557;58558;58559;58560;58561;58562 58559 510 18 SKLPKPVQDLIK DEEAVKKLTVNPGTKSKLPKPVQDLIKMIF GTKSKLPKPVQDLIKMIFDVESMKKAMVEY K S K I K M 0 0 0 1 0 1 0 0 0 1 2 3 0 0 2 1 0 0 0 1 0 0 12 2 1364.8391 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 663 674 PARP1 Poly [ADP-ribose] polymerase 1 yes no 3 1.8491E-05 130.69 5 2 0.91304 1.0811 30.349 6 Median 1.0761 1.2409 13.597 4 0 Median 0.38603 0.67199 4.6247 2 0 Median 243710000 120090000 123620000 198960000 88761000 110200000 44756000 31327000 13428000 10898 107 11193 39012;39013;39014;39015;39016;39017;39018 58563;58564;58565;58566;58567;58568;58569;58570 58567 8 SKNEDRGEEEAESSISSTSNEQLK LELHQRFLREGRFWKSKNEDRGEEEAESSI EAESSISSTSNEQLKVTQEPRAKKGRRNQS K S K L K V 1 1 2 1 0 1 6 1 0 1 1 2 0 0 0 6 1 0 0 0 0 0 24 2 2653.1951 Q5BJG6;B7Z3W2;J3QKD2;Q15326;Q6PJR5;A0A0A0MRY2;B0QZE2;B7Z2J6;E7ENI9;Q5UGI2;B7Z3Z1 Q5BJG6 271 294 ZMYND11 Zinc finger MYND domain-containing protein 11 yes no 3 0.007822 75.106 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10899 906 11194 39019 58571 58571 1 SKPDLESSLESLVFDLR DLKKKKAKAGKLKDKSKPDLESSLESLVFD PDLESSLESLVFDLRTKKRISEAKEELKES K S K L R T 0 1 0 2 0 0 2 0 0 0 4 1 0 1 1 4 0 0 0 1 0 0 17 1 1933.9997 Q99549;B3KS10 Q99549 182 198 MPHOSPH8 M-phase phosphoprotein 8 yes no 3 8.0983E-05 95.197 1 0.74674 1.0088 NaN 1 Median 0.74674 1.0088 NaN 1 0 Median NaN NaN NaN 0 0 Median 7685800 2258800 5427100 7685800 2258800 5427100 0 0 0 10900 1705 11195 39020 58572;58573;58574 58573 3 SKTDNSSLSSPLNPK KRKNTGSPDRKPSKKSKTDNSSLSSPLNPK SKTDNSSLSSPLNPKLWCHVHLKKSLSGSP K S K P K L 0 0 2 1 0 0 0 0 0 0 2 2 0 0 2 5 1 0 0 0 0 0 15 1 1573.7948 Q9UIG0 Q9UIG0 321 335 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 5.4167E-05 132.06 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1812600 0 1812600 1812600 0 1812600 0 0 0 10901 1786 11196 39021;39022 58575;58576 58575 2 SKVEDPEINSIQDIK LTLSLRSSRTNPETKSKVEDPEINSIQDIK SKVEDPEINSIQDIKEGQLLRGYVGSIQPH K S K I K E 0 0 1 2 0 1 2 0 0 3 0 2 0 0 1 2 0 0 0 1 0 0 15 1 1713.8785 Q14690 Q14690 1308 1322 PDCD11 Protein RRP5 homolog yes yes 2;3 3.9566E-50 233.52 7 2 0.94239 1.2021 15.31 9 Median 0.95069 1.1733 17.537 7 0 Median 0.75862 1.2119 1.1518 2 0 Median 136730000 72102000 64633000 100220000 51506000 48709000 36519000 20595000 15924000 10902 1494 11197 39023;39024;39025;39026;39027;39028;39029;39030;39031 58577;58578;58579;58580;58581;58582;58583;58584;58585;58586;58587;58588;58589;58590;58591 58581 15 SKVPVLDEGLTSVETYTPAIR LCAPSVYEGKIFTQKSKVPVLDEGLTSVET DEGLTSVETYTPAIRANDNKSMADVLGDGG K S K I R A 1 1 0 1 0 0 2 1 0 1 2 1 0 0 2 2 3 0 1 3 0 0 21 1 2274.2107 Q8WYP5;B3KVE5;B3KTD2 Q8WYP5 1426 1446 AHCTF1 Protein ELYS yes no 3 1.1638E-14 126.29 5 1 0.78017 1.0329 6.6226 5 Median 0.80328 1.0524 4.2725 4 0 Median 0.5453 0.94001 NaN 1 0 Median 145440000 82773000 62667000 118750000 65654000 53098000 26687000 17119000 9568500 10903 1670 11198 39032;39033;39034;39035;39036;39037 58592;58593;58594;58595;58596;58597;58598;58599;58600;58601;58602 58596 11 SKYEALQTFAR ARENSSMRLELDALRSKYEALQTFARTVAR DALRSKYEALQTFARTVARGPVAPSKVATT R S K A R T 2 1 0 0 0 1 1 0 0 0 1 1 0 1 0 1 1 0 1 0 0 0 11 1 1312.6776 A0A024R804;A8WFP5;O60675;A0A024R8X1;O15525 A0A024R804 109 119 MAFK;hCG_1991559;MAFG Transcription factor MafK;Transcription factor MafG no no 2;3 1.5547E-05 122.51 3 1.2291 1.5995 10.857 3 Median 1.2291 1.5995 10.857 3 0 Median NaN NaN NaN 0 0 Median 80207000 34129000 46079000 80207000 34129000 46079000 0 0 0 10904 188;207 11199 39038;39039;39040 58603;58604;58605;58606 58606 4 SLAAEEEAAR EEERRRREAEERVQKSLAAEEEAARQRKAA ERVQKSLAAEEEAARQRKAALEEVERLKAK K S L A R Q 4 1 0 0 0 0 3 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 10 0 1045.504 Q15149 Q15149 2130 2139 PLEC Plectin yes yes 2 0.0017123 75.378 1 0.86116 1.1455 NaN 1 Median 0.86116 1.1455 NaN 1 0 Median NaN NaN NaN 0 0 Median 17386000 9572300 7813900 17386000 9572300 7813900 0 0 0 10905 1507 11200 39041 58607 58607 1 SLAAQEPASVLEEAR KPRTPRCAAPQIRSRSLAAQEPASVLEEAR SLAAQEPASVLEEARLRLHVSAVPESLPCR R S L A R L 4 1 0 0 0 1 3 0 0 0 2 0 0 0 1 2 0 0 0 1 0 0 15 0 1569.7999 B7Z8H0;Q96F82;A8K794;Q13415 B7Z8H0 473 487 ORC1L;ORC1 Origin recognition complex subunit 1 yes no 2 4.1261E-07 112.5 3 2 0.64297 0.84814 11.566 3 Median 0.64297 0.84814 11.566 3 0 Median NaN NaN NaN 0 0 Median 38421000 28264000 10156000 24068000 13912000 10156000 14353000 14353000 0 10906 630 11201 39042;39043;39044;39045;39046 58608;58609;58610;58611;58612 58610 5 SLAASSSFYGQR ILADSRHLWSPFGLRSLAASSSFYGQRNSE GLRSLAASSSFYGQRNSEHDPPYWRGAVWL R S L Q R N 2 1 0 0 0 1 0 1 0 0 1 0 0 1 0 4 0 0 1 0 0 0 12 0 1272.6099 A8K9K4;Q58F09;Q13724 A8K9K4 455 466 GCS1;MOGS Mannosyl-oligosaccharide glucosidase yes no 2 0.0066026 48.44 1 1.1517 1.4635 NaN 1 Median NaN NaN NaN 0 0 Median 1.1517 1.4635 NaN 1 0 Median 4679200 2261600 2417600 0 0 0 4679200 2261600 2417600 10907 646 11202 39047 58613 58613 1 SLAGSSGPGASSGTSGDHGELVVR VILRDIARARENIQKSLAGSSGPGASSGTS ASSGTSGDHGELVVRIASLEVENQSLRGVV K S L V R I 2 1 0 1 0 0 1 6 1 0 2 0 0 0 1 6 1 0 0 2 0 0 24 0 2184.0407 E9PK01;P29692;E9PMW7;E9PPR1;E9PL12;E9PQ49;E9PI39;D3DWK1;B2RAR6;E9PRY8;E9PIZ1;H0YCK7;A0A087X1X7;Q71RH4;Q9H7G6 E9PK01 60 83 EEF1D Elongation factor 1-delta yes no 3 2.1993E-12 121.21 4 2 0.72506 1.0009 66.428 4 Median 0.40689 0.54817 9.6445 2 0 Median 1.2036 1.725 1.4937 2 0 Median 49279000 32214000 17065000 33414000 25188000 8226400 15865000 7026500 8838600 10908 1035 11203 39048;39049;39050;39051;39052;39053 58614;58615;58616;58617;58618;58619;58620;58621;58622 58617 9 SLALIFNSLQGQLHPTPDLK HTIQGTIKDGGILPRSLALIFNSLQGQLHP FNSLQGQLHPTPDLKPLLSNEVIWLDSKQI R S L L K P 1 0 1 1 0 2 0 1 1 1 5 1 0 1 2 2 1 0 0 0 0 0 20 0 2191.2001 O95235;D6RBN1 O95235 183 202 KIF20A Kinesin-like protein KIF20A;Kinesin-like protein yes no 2;3 1.0247E-13 92.31 4 2 0.63941 0.96187 25.165 5 Median 0.78968 1.0016 27.943 3 0 Plateau 0.51636 0.78085 29.485 2 0 Median 47701000 24532000 23169000 22030000 10015000 12015000 25671000 14517000 11154000 10909 1215 11204 39054;39055;39056;39057;39058;39059 58623;58624;58625;58626;58627;58628;58629 58629 6 SLAMSVTTSGFSEFTPQSILR ELHLLETPLVVKKAKSLAMSVTTSGFSEFT TTSGFSEFTPQSILRSTLRSTPLASPSPSP K S L L R S 1 1 0 0 0 1 1 1 0 1 2 0 1 2 1 5 3 0 0 1 0 0 21 0 2258.1253 Q8WYP5;B3KVE5;B3KTD2 Q8WYP5 1184 1204 AHCTF1 Protein ELYS yes no 2 0.016154 64.52 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 468180 468180 0 468180 468180 0 0 0 0 10910 1670 11205 39060 58630 58630 750 1 SLANDFSTNSTK GQNVLEILQDCFEEKSLANDFSTNSTKSVP EEKSLANDFSTNSTKSVPNSTRKIKDTCIQ K S L T K S 1 0 2 1 0 0 0 0 0 0 1 1 0 1 0 3 2 0 0 0 0 0 12 0 1283.5994 Q03188 Q03188 46 57 CENPC Centromere protein C yes yes 2 3.5475E-05 74.944 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7781300 0 7781300 7781300 0 7781300 0 0 0 10911 1439 11206 39061;39062 58631;58632 58632 2 SLAPAGIADAPLSPLLTCIPNK CLIKFSSPHLLEALKSLAPAGIADAPLSPL ADAPLSPLLTCIPNKRMNYFKIRDK_____ K S L N K R 4 0 1 1 1 0 0 1 0 2 4 1 0 0 4 2 1 0 0 0 0 0 22 0 2218.2031 Q96H22 Q96H22 308 329 CENPN Centromere protein N yes yes 2 4.9887E-19 132.51 4 0.65432 0.84049 6.3073 4 Median 0.65432 0.84049 6.3073 4 0 Median NaN NaN NaN 0 0 Median 23721000 14105000 9616000 23721000 14105000 9616000 0 0 0 10912 1687 11207 39063;39064;39065;39066 58633;58634;58635;58636;58637;58638;58639 58636 7 SLAPSIHGHDYVK FSKTRSKDIFDQLAKSLAPSIHGHDYVKKA AKSLAPSIHGHDYVKKAILCLLLGGVERDL K S L V K K 1 0 0 1 0 0 0 1 2 1 1 1 0 0 1 2 0 0 1 1 0 0 13 0 1422.7256 Q8NHX6;Q53HJ4;B2R7C5;A0A0S2Z4T1;A0A0S2Z492;P25205;B4DUQ9;J3KQ69;B4DS46 Q8NHX6 302 314 HCC5;MCM3 DNA helicase;DNA replication licensing factor MCM3 yes no 3 0.00051576 59.898 2 0.42608 0.53496 NaN 1 Median 0.42608 0.53496 NaN 1 0 Median NaN NaN NaN 0 0 Median 15704000 14169000 1534700 15704000 14169000 1534700 0 0 0 10913 463 11208 39067;39068 58640;58641 58641 2 SLASVSYAAVDFFRPSAQR STMDLVKSKSMDAIRSLASVSYAAVDFFRP VSYAAVDFFRPSAQRLIEEKGAVDALAAAL R S L Q R L 4 2 0 1 0 1 0 0 0 0 1 0 0 2 1 4 0 0 1 2 0 0 19 1 2071.0487 Q9BQ39;B4DED6;B4DW97;Q9NTA9 Q9BQ39 533 551 DDX50;DKFZp761E0323 ATP-dependent RNA helicase DDX50 yes no 3 0.030678 41.088 3 0.62959 0.82489 12.431 3 Plateau 0.62959 0.82489 12.431 3 0 Plateau NaN NaN NaN 0 0 Median 11897000 7469700 4427000 11897000 7469700 4427000 0 0 0 10914 1707 11209 39069;39070;39071 58642;58643;58644 58643 3 SLAVPTIEELEDEEER IDLQNLLTTQSPSVKSLAVPTIEELEDEEE LAVPTIEELEDEEERNHRQMIKEAFAGDDV K S L E R N 1 1 0 1 0 0 6 0 0 1 2 0 0 0 1 1 1 0 0 1 0 0 16 0 1857.8844 Q9BVJ6;B4E343 Q9BVJ6 574 589 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 0.00019315 97.953 3 0.98779 1.3895 10.303 2 Median 0.98779 1.3895 10.303 2 0 Median NaN NaN NaN 0 0 Median 5056300 1824400 3232000 5056300 1824400 3232000 0 0 0 10915 1719 11210 39072;39073;39074 58645;58646;58647 58645 3 SLAVPTIEELEDEEERNHR IDLQNLLTTQSPSVKSLAVPTIEELEDEEE PTIEELEDEEERNHRQMIKEAFAGDDVIRD K S L H R Q 1 2 1 1 0 0 6 0 1 1 2 0 0 0 1 1 1 0 0 1 0 0 19 1 2265.0873 Q9BVJ6;B4E343 Q9BVJ6 574 592 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 3;4 0.0059307 50.04 3 1.0793 1.4577 5.3724 3 Plateau 1.0793 1.4577 5.3724 3 0 Plateau NaN NaN NaN 0 0 Median 52358000 24724000 27635000 52358000 24724000 27635000 0 0 0 10916 1719 11211 39075;39076;39077 58648;58649;58650 58648 3 SLAVSGLGVIGR SLECTLILTEGDSAKSLAVSGLGVIGRDRY SAKSLAVSGLGVIGRDRYGVFPLRGKILNV K S L G R D 1 1 0 0 0 0 0 3 0 1 2 0 0 0 0 2 0 0 0 2 0 0 12 0 1127.6663 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 460 471 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 8.6833E-16 150.27 4 2 0.62092 0.85695 7.8983 5 Median 0.62797 0.85525 0.84841 3 0 Median 0.61152 0.97897 4.0351 2 0 Median 197520000 117670000 79857000 106640000 64592000 42052000 90880000 53075000 37805000 10917 1437 11212 39078;39079;39080;39081;39082;39083 58651;58652;58653;58654;58655;58656;58657;58658;58659;58660;58661;58662;58663 58654 13 SLAYLTAATHGLDEEAESLK DVSERVRILKNCGQKSLAYLTAATHGLDEE TAATHGLDEEAESLKETFDPEKETIPDIDP K S L L K E 4 0 0 1 0 0 3 1 1 0 4 1 0 0 0 2 2 0 1 0 0 0 20 0 2118.0481 P53621 P53621 756 775 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2;3 1.1062E-72 223.39 5 0.46793 0.59304 23.405 4 Median 0.46793 0.59304 23.405 4 0 Median NaN NaN NaN 0 0 Median 21535000 14893000 6642100 21535000 14893000 6642100 0 0 0 10918 1371 11213 39084;39085;39086;39087;39088 58664;58665;58666;58667;58668;58669;58670;58671;58672;58673 58666 10 SLCFQYPPVYVGK ERRDNVAVMATGYGKSLCFQYPPVYVGKIG GKSLCFQYPPVYVGKIGLVISPLISLMEDQ K S L G K I 0 0 0 0 1 1 0 1 0 0 1 1 0 1 2 1 0 0 2 2 0 0 13 0 1556.7697 Q14191 Q14191 578 590 WRN Werner syndrome ATP-dependent helicase yes yes 2 0.025246 68.626 1 0.84728 1.0222 NaN 1 Median 0.84728 1.0222 NaN 1 0 Median NaN NaN NaN 0 0 Median 596230 299480 296750 596230 299480 296750 0 0 0 10919 1482 11214 39089 58674 58674 1 SLCIGATYDVTDSR AFIIRSFGGEVSWDKSLCIGATYDVTDSRI KSLCIGATYDVTDSRITHQIVDRPGQQTSV K S L S R I 1 1 0 2 1 0 0 1 0 1 1 0 0 0 0 2 2 0 1 1 0 0 14 0 1556.7141 B5MCF9;B2RDF2;O00541;B3KXD6;B3KTZ6 B5MCF9 342 355 PES1 Pescadillo homolog yes no 2 1.0933E-17 164.48 4 2 0.85284 1.17 18.307 6 Median 0.88533 1.2068 3.0295 4 0 Median 0.5478 0.84396 6.5091 2 0 Median 204690000 112340000 92351000 162860000 86537000 76319000 41839000 25807000 16032000 10920 735 11215 39090;39091;39092;39093;39094;39095 58675;58676;58677;58678;58679;58680;58681;58682;58683;58684;58685;58686;58687;58688;58689;58690;58691;58692;58693 58684 19 SLCIPFKPLCELQPGAK RDQDLEPGAPSMGAKSLCIPFKPLCELQPG CIPFKPLCELQPGAKCVCGKNPAKYYTLFG K S L A K C 1 0 0 0 2 1 1 1 0 1 3 2 0 1 3 1 0 0 0 0 0 0 17 1 1957.0165 P07814;B4DP50 P07814 1478 1494 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 3 0.0035671 60.158 1 0.91819 1.1338 NaN 1 Median 0.91819 1.1338 NaN 1 0 Median NaN NaN NaN 0 0 Median 7575000 4023300 3551600 7575000 4023300 3551600 0 0 0 10921 1242 11216 39096 58694 58694 1 SLCREEAETPAEATGKPQR SQKAQNSWKKRQVFKSLCREEAETPAEATG EEAETPAEATGKPQRDEAGPQRQLPALDGS K S L Q R D 3 2 0 0 1 1 4 1 0 0 1 1 0 0 2 1 2 0 0 0 0 0 19 2 2129.0171 Q8N9T8;A0A024R7C4;B4DUT2 Q8N9T8 589 607 KRI1;FLJ12949 Protein KRI1 homolog yes no 3 1.9166E-15 133.32 2 0.58484 0.69139 48.166 2 Median 0.58484 0.69139 48.166 2 0 Median NaN NaN NaN 0 0 Median 11462000 7091500 4370900 11462000 7091500 4370900 0 0 0 10922 1645 11217 39097;39098 58695;58696;58697;58698;58699 58696 5 SLDFGFTIK QFSDMRISINQTPGKSLDFGFTIKWDIPGI NQTPGKSLDFGFTIKWDIPGIFVASVEAGS K S L I K W 0 0 0 1 0 0 0 1 0 1 1 1 0 2 0 1 1 0 0 0 0 0 9 0 1026.5386 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424;H0YE95;H0YDG6 A0A1P7ZIM8 666 674 LMO7 LIM domain only protein 7 yes no 2 0.0071128 101.72 4 0.50845 0.65888 9.5026 3 Median 0.50845 0.65888 9.5026 3 0 Median NaN NaN NaN 0 0 Median 44968000 31303000 13664000 44968000 31303000 13664000 0 0 0 10923 525 11218 39099;39100;39101;39102 58700;58701;58702;58703;58704 58701 5 SLDIFIK KYNEFSVSLLNEDPKSLDIFIKAVHTTKEL SLLNEDPKSLDIFIKAVHTTKELYAGMPTI K S L I K A 0 0 0 1 0 0 0 0 0 2 1 1 0 1 0 1 0 0 0 0 0 0 7 0 834.48511 B2RWN5;Q9H583;A0A024R3R7;A2VDI1;B4E263;B7ZAU8 B2RWN5 1081 1087 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.0281 97.473 3 0.89912 1.1265 10.019 2 Median 0.89912 1.1265 10.019 2 0 Median NaN NaN NaN 0 0 Median 49137000 22735000 26402000 49137000 22735000 26402000 0 0 0 10924 748 11219 39103;39104;39105 58705;58706;58707 58707 3 SLDIQVPNFPADETK LESLRVIITNFPAAKSLDIQVPNFPADETK SLDIQVPNFPADETKGFHQVPFAPIVFIER K S L T K G 1 0 1 2 0 1 1 0 0 1 1 1 0 1 2 1 1 0 0 1 0 0 15 0 1672.8308 B4DNN3;Q53HS0;A8K3A8;P47897;Q9H3A5;Q9BUZ3;B4DDN1;Q96AW5;A0A1B0GVU9;H7C0R3;A0A0U1RQX5;A0A0U1RRC8 B4DNN3 537 551 QARS Glutamine--tRNA ligase yes no 2 0.0067121 46.592 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10215000 0 10215000 0 0 0 10215000 0 10215000 10925 591 11220 39106;39107 58708;58709 58708 2 SLDIYSFIK GQEEKEEDLKKKELKSLDIYSFIKEANTLN KKKELKSLDIYSFIKEANTLNLAPYDACWN K S L I K E 0 0 0 1 0 0 0 0 0 2 1 1 0 1 0 2 0 0 1 0 0 0 9 0 1084.5805 H0Y580;Q9HA31;Q9NR50 H0Y580 81 89 EIF2B3 Translation initiation factor eIF-2B subunit gamma yes no 2 0.04662 75.043 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 909030 909030 0 909030 909030 0 0 0 0 10926 1090 11221 39108 58710 58710 1 SLDLDGIIAEVK QISDTSVVLSMDNSRSLDLDGIIAEVKAQY NSRSLDLDGIIAEVKAQYEEMAKCSRAEAE R S L V K A 1 0 0 2 0 0 1 1 0 2 2 1 0 0 0 1 0 0 0 1 0 0 12 0 1271.6973 CON__P08729;Q3KNV1;Q3B834;CON__Q3KNV1;P08729;B3KY79 CON__Q3KNV1 254 265 KRT7 Keratin, type II cytoskeletal 7 no no 2 1.1399E-09 156.16 4 2 0.35795 0.4528 88.317 6 Median 0.34219 0.43552 7.5083 4 0 Median 1.4816 2.3664 2.3866 2 0 Median 312020000 197480000 114540000 214990000 162810000 52177000 97036000 34671000 62366000 + 10927 968;957 11222 39109;39110;39111;39112;39113;39114 58711;58712;58713;58714;58715;58716;58717;58718;58719;58720;58721;58722 58717 12 SLDLDSCTLSEILR LAAAWPQLHQGCSLKSLDLDSCTLSEILRL KSLDLDSCTLSEILRLHILASGADVTSANA K S L L R L 0 1 0 2 1 0 1 0 0 1 4 0 0 0 0 3 1 0 0 0 0 0 14 0 1620.8029 D3DS96;Q9NRL2;Q59G54 D3DS96 540 553 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 1.2722E-20 172.61 3 0.35338 0.47861 NaN 1 Median 0.35338 0.47861 NaN 1 0 Median NaN NaN NaN 0 0 Median 16716000 14126000 2589600 16716000 14126000 2589600 0 0 0 10928 979 11223 39115;39116;39117 58723;58724;58725 58723 3 SLDLDSIIAEVK QISETNVILSMDNNRSLDLDSIIAEVKAQY NNRSLDLDSIIAEVKAQYEDIAQKSKAEAE R S L V K A 1 0 0 2 0 0 1 0 0 2 2 1 0 0 0 2 0 0 0 1 0 0 12 0 1301.7078 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9 H6VRG3 344 355 KRT1 Keratin, type II cytoskeletal 1 no no 2 7.6578E-25 185.96 8 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2958900000 2958900000 0 2203700000 2203700000 0 755200000 755200000 0 + 10929 1113 11224 39118;39119;39120;39121;39122;39123;39124;39125;39126 58726;58727;58728;58729;58730;58731;58732;58733;58734;58735;58736 58734 11 SLDLFNCEITNLEDYR DLSTVEALQNLKNLKSLDLFNCEITNLEDY LDLFNCEITNLEDYRESIFELLQQITYLDG K S L Y R E 0 1 2 2 1 0 2 0 0 1 3 0 0 1 0 1 1 0 1 0 0 0 16 0 2000.915 Q53F20;Q9BTT0;E9PPH5 Q53F20 117 132 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 2 0.00016849 122.46 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1233300 1233300 0 1233300 1233300 0 0 0 0 10930 1538 11225 39127;39128 58737;58738 58737 2 SLDLIESLLR KAPPEDDNREIATWKSLDLIESLLRLAEVG IATWKSLDLIESLLRLAEVGQYEQVKQLFS K S L L R L 0 1 0 1 0 0 1 0 0 1 4 0 0 0 0 2 0 0 0 0 0 0 10 0 1157.6656 A5YKK6 A5YKK6 450 459 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 2 0.0167 54.416 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10931 560 11226 39129 58739 58739 1 SLDLSGLELLSEHLDPK MQRGRPKSDRLGKIRSLDLSGLELLSEHLD DLSGLELLSEHLDPKLLCRLTQLQELDLSN R S L P K L 0 0 0 2 0 0 2 1 1 0 6 1 0 0 1 3 0 0 0 0 0 0 17 0 1864.9782 A0A140VJD0;Q9UFC0 A0A140VJD0 25 41 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes no 2;3 0.00092234 121.18 2 0.56125 0.71224 NaN 1 Median 0.56125 0.71224 NaN 1 0 Median NaN NaN NaN 0 0 Median 8074700 4905800 3168900 8074700 4905800 3168900 0 0 0 10932 493 11227 39130;39131 58740;58741 58740 2 SLDMDSIIAEVK QISDTSVVLSMDNSRSLDMDSIIAEVKAQY NSRSLDMDSIIAEVKAQYEDIANRSRAEAE R S L V K A 1 0 0 2 0 0 1 0 0 2 1 1 1 0 0 2 0 0 0 1 0 0 12 0 1319.6643 CON__P05787;P05787;Q969I0;F8VUG2;Q7L4M3;CON__H-INV:HIT000292931 CON__P05787 253 264 KRT8 Keratin, type II cytoskeletal 8 yes no 2 9.5629E-25 196.27 4 6 0.63584 0.87391 145.49 8 Median 0.21094 0.26524 24.523 4 0 Median 2.2007 3.3283 33.521 4 0 Median 181000000 95171000 85832000 96165000 79247000 16918000 84839000 15924000 68914000 + 10933 955 11228;11229 39132;39133;39134;39135;39136;39137;39138;39139;39140;39141 58742;58743;58744;58745;58746;58747;58748;58749;58750;58751;58752;58753;58754;58755 58744 330 14 SLDPADERDDVLAK DRMTEDALRLNLLKRSLDPADERDDVLAKR RSLDPADERDDVLAKRLKMEGHEAMERLKM R S L A K R 2 1 0 4 0 0 1 0 0 0 2 1 0 0 1 1 0 0 0 1 0 0 14 1 1542.7526 A0A0U1RRM1;Q8WXI9;B3KSZ4;A0A0U1RR34;A0A0U1RRK3 A0A0U1RRM1 17 30 GATAD2B Transcriptional repressor p66-beta yes no 3 0.032614 19.578 2 0.83654 1.2816 4.1869 2 Median NaN NaN NaN 0 0 Median 0.83654 1.2816 4.1869 2 0 Median 15002000 6939700 8062500 0 0 0 15002000 6939700 8062500 10934 488 11230 39142;39143 58756;58757;58758 58757 3 SLDQAINDK TSKEERDKWIKKELKSLDQAINDKKRQIAA IKKELKSLDQAINDKKRQIAAIHKDLEDTE K S L D K K 1 0 1 2 0 1 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 9 0 1002.4982 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 401 409 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.0053733 72.23 1 1 0.5769 0.77834 NaN 1 Median NaN NaN NaN 0 0 Median 0.5769 0.77834 NaN 1 0 Median 7669000 6271400 1397600 4020100 4020100 0 3648900 2251300 1397600 10935 663 11231 39144;39145 58759;58760 58759 2 SLEAEGFQVTYLPVQK ITTQTEHKCVLDSCRSLEAEGFQVTYLPVQ LEAEGFQVTYLPVQKSGIIDLKELEAAIQP R S L Q K S 1 0 0 0 0 2 2 1 0 0 2 1 0 1 1 1 1 0 1 2 0 0 16 0 1807.9356 Q5QP19;Q53FP3;B2R5S3;Q9Y697;F2Z2E7 Q5QP19 105 120 NFS1 Cysteine desulfurase, mitochondrial yes no 2 0.00066149 49.5 1 0.68447 0.84782 NaN 1 Median 0.68447 0.84782 NaN 1 0 Median NaN NaN NaN 0 0 Median 2679500 1484100 1195400 2679500 1484100 1195400 0 0 0 10936 691 11232 39146 58761;58762 58762 2 SLEAQVAHADQQLR KEAEQTCRHLTAQVRSLEAQVAHADQQLRD RSLEAQVAHADQQLRDLGKFQVATDALKSR R S L L R D 3 1 0 1 0 3 1 0 1 0 2 0 0 0 0 1 0 0 0 1 0 0 14 0 1564.7958 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;K4DIE0;Q4LE64;Q14980 Q4LE64 1668 1681 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2;3 1.1796E-35 190.85 8 2 0.60322 0.81214 28.057 8 Median 0.64506 0.86381 12.145 6 0 Median 0.31508 0.50109 1.6238 2 0 Median 214260000 136050000 78210000 137120000 78230000 58894000 77137000 57821000 19316000 10937 148;1499 11233 39147;39148;39149;39150;39151;39152;39153;39154;39155;39156 58763;58764;58765;58766;58767;58768;58769;58770;58771;58772;58773;58774;58775;58776;58777;58778;58779;58780 58769 18 SLEDALAEAQR ELEKRKDKETGGILRSLEDALAEAQRVNTK GILRSLEDALAEAQRVNTKSQSAFDLKKKN R S L Q R V 3 1 0 1 0 1 2 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 11 0 1201.5939 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;Q7Z2X1 A0A024R158 298 308 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 1.3776E-18 192.91 4 2 0.66572 0.94686 5.909 6 Median 0.672 0.926 2.5961 4 0 Median 0.62092 1.0282 3.7348 2 0 Median 1116300000 674170000 442130000 582610000 347630000 234980000 533690000 326540000 207160000 10938 50 11234 39157;39158;39159;39160;39161;39162 58781;58782;58783;58784;58785;58786;58787;58788;58789;58790;58791;58792 58783 12 SLEDLQDEYDFK RNVKDKVMCIEHEIKSLEDLQDEYDFKCKT EIKSLEDLQDEYDFKCKTLQNR________ K S L F K C 0 0 0 3 0 1 2 0 0 0 2 1 0 1 0 1 0 0 1 0 0 0 12 0 1500.662 E7EPD2;D2KFR9;J3KPM9;P42224;A5D905 E7EPD2 162 173 STAT1 Signal transducer and activator of transcription;Signal transducer and activator of transcription 1-alpha/beta yes no 2 0.0092251 98.04 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10939 977 11235 39163 58793 58793 1 SLEEEVTCSICLDYLR ______________________________ LEEEVTCSICLDYLRDPVTIDCGHVFCRSC R S L L R D 0 1 0 1 2 0 3 0 0 1 3 0 0 0 0 2 1 0 1 1 0 0 16 0 1985.9074 A0A024RCP3;Q12899;A2AE48;A2AE50;Q5SPU2;A0A0G2JIW2 A0A024RCP3 9 24 TRIM26 Tripartite motif-containing protein 26 yes no 2 9.5894E-05 58.674 1 0.60109 0.79856 NaN 1 Median 0.60109 0.79856 NaN 1 0 Median NaN NaN NaN 0 0 Median 2330500 1611800 718660 2330500 1611800 718660 0 0 0 10940 299 11236 39164 58794 58794 1 SLEEIYLFSLPIK PVTKLGRLVKDMKIKSLEEIYLFSLPIKES IKSLEEIYLFSLPIKESEIIDFFLGASLKD K S L I K E 0 0 0 0 0 0 2 0 0 2 3 1 0 1 1 2 0 0 1 0 0 0 13 0 1550.8596 P15880;Q8J014;Q8N5L9;Q6IPX5;Q3KQT6;H0YEN5;E9PQD7;E9PMM9;E9PPT0;Q8NI61;D3DU83;H3BNG3;H0YE27 P15880 77 89 RPS2;rps2;OK/KNS-cl.7 40S ribosomal protein S2 yes no 2 2.3811E-41 219.03 6 0.77682 1.0037 1.2841 5 Median 0.77682 1.0037 1.2841 5 0 Median NaN NaN NaN 0 0 Median 356920000 203950000 152960000 356920000 203950000 152960000 0 0 0 10941 1269 11237 39165;39166;39167;39168;39169;39170 58795;58796;58797;58798;58799;58800;58801;58802;58803;58804;58805;58806 58799 12 SLEEQDQETLR SIVRPLETENHKSLRSLEEQDQETLRTLEK KSLRSLEEQDQETLRTLEKETQQRRRSLGE R S L L R T 0 1 0 1 0 2 3 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 11 0 1346.6314 D3DVC4;P48681 D3DVC4 746 756 NES Nestin yes no 2 0.0045222 66.435 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2340500 2340500 0 2340500 2340500 0 0 0 0 10942 986 11238 39171 58807 58807 1 SLEGADLPNLLFYGPPGTGK DEVAFQEEVVAVLKKSLEGADLPNLLFYGP DLPNLLFYGPPGTGKTSTILAAARELFGPE K S L G K T 1 0 1 1 0 0 1 4 0 0 4 1 0 1 3 1 1 0 1 0 0 0 20 0 2045.047 P35249;C9JZI1;C9JXZ7;C9JTT7;C9J8M3;C9JGY5;F8WE44 P35249 65 84 RFC4 Replication factor C subunit 4 yes no 2 1.711E-51 201.3 4 0.55904 0.70772 17.931 4 Median 0.55904 0.70772 17.931 4 0 Median NaN NaN NaN 0 0 Median 27155000 17352000 9803800 27155000 17352000 9803800 0 0 0 10943 1317 11239 39172;39173;39174;39175 58808;58809;58810;58811;58812;58813;58814;58815 58808 8 SLEGGNFIAGVLIQGTQER TTTVKEVAEMDSVKRSLEGGNFIAGVLIQG GNFIAGVLIQGTQERMSIPEALRRHILRPG R S L E R M 1 1 1 0 0 2 2 4 0 2 2 0 0 1 0 1 1 0 0 1 0 0 19 0 1988.0327 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 1566 1584 EPPK1 Epiplakin no no 2 0.00033555 85.473 1 0.63653 0.89982 NaN 1 Median 0.63653 0.89982 NaN 1 0 Median NaN NaN NaN 0 0 Median 3901800 1834800 2067100 3901800 1834800 2067100 0 0 0 10944 373;1386 11240 39176 58816 58816 1 SLENIFAESK EVTKEMKTNAMGLIRSLENIFAESKIKSFR MGLIRSLENIFAESKIKSFRRQVQEENFEY R S L S K I 1 0 1 0 0 0 2 0 0 1 1 1 0 1 0 2 0 0 0 0 0 0 10 0 1136.5714 Q15058 Q15058 1466 1475 KIF14 Kinesin-like protein KIF14 yes yes 2 0.046613 72.643 1 0.70158 0.85716 NaN 1 Median 0.70158 0.85716 NaN 1 0 Median NaN NaN NaN 0 0 Median 3185400 1796800 1388500 3185400 1796800 1388500 0 0 0 10945 1504 11241 39177 58817 58817 0 SLEQNIQLPAALLSR LAAANPAYGRYNPRRSLEQNIQLPAALLSR SLEQNIQLPAALLSRFDLLWLIQDRPDRDN R S L S R F 2 1 1 0 0 2 1 0 0 1 4 0 0 0 1 2 0 0 0 0 0 0 15 0 1651.9257 B2RBA6;A0A0S2Z4A5;P33993;B3KUD7;B4DDF5;C6EMX8;Q9H4N9 B2RBA6 500 514 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 2 1.3326E-37 225.72 5 0.30701 0.40908 18.225 3 Median 0.30701 0.40908 18.225 3 0 Median NaN NaN NaN 0 0 Median 56859000 43629000 13230000 56859000 43629000 13230000 0 0 0 10946 464 11242 39178;39179;39180;39181;39182 58818;58819;58820;58821;58822;58823;58824;58825 58820 8 SLESCPGETVVAEDPAGLK AVWKITSEAIGQLHRSLESCPGETVVAEDP CPGETVVAEDPAGLKVPLLLHQKQALAWLL R S L L K V 2 0 0 1 1 0 3 2 0 0 2 1 0 0 2 2 1 0 0 2 0 0 19 0 1957.9303 A0A024R0F1;Q9UNY4 A0A024R0F1 549 567 TTF2 Transcription termination factor 2 yes no 2 9.9683E-25 164.53 5 0.84287 1.0605 18.472 4 Median 0.84287 1.0605 18.472 4 0 Median NaN NaN NaN 0 0 Median 31896000 16383000 15513000 31896000 16383000 15513000 0 0 0 10947 33 11243 39183;39184;39185;39186;39187 58826;58827;58828;58829;58830;58831;58832;58833;58834 58826 9 SLESINSR ______________________________ AAKKTKKSLESINSRLQLVMKSGKYVLGYK K S L S R L 0 1 1 0 0 0 1 0 0 1 1 0 0 0 0 3 0 0 0 0 0 0 8 0 904.46141 E5RI99;A0A024R9D3;P62888;E5RJH3;A0A0C4DH44 E5RI99 10 17 RPL30 60S ribosomal protein L30 yes no 2 2.4729E-05 139.28 2 1 0.81724 1.1196 30.19 3 Median 0.84925 1.1364 2.0983 2 0 Median 0.45823 0.67406 NaN 1 0 Median 182560000 101960000 80602000 168840000 92107000 76730000 13726000 9853800 3871800 10948 219 11244 39188;39189;39190 58835;58836;58837;58838 58836 4 SLESLHSFVAAATK LQYAKLLNSSKARLRSLESLHSFVAAATKE RSLESLHSFVAAATKELMWLNEKEEEEVGF R S L T K E 3 0 0 0 0 0 1 0 1 0 2 1 0 1 0 3 1 0 0 1 0 0 14 0 1459.7671 Q15149;E9PMV1 Q15149 751 764 PLEC Plectin yes no 2;3 1.0927E-17 142.1 5 0.89905 1.1302 5.3233 4 Median 0.89905 1.1302 5.3233 4 0 Median NaN NaN NaN 0 0 Median 136450000 85337000 51113000 136450000 85337000 51113000 0 0 0 10949 1507 11245 39191;39192;39193;39194;39195 58839;58840;58841;58842;58843;58844 58842 6 SLETENAGLR QELNDRLAVYIDRVRSLETENAGLRLRITE IDRVRSLETENAGLRLRITESEEVVSREVS R S L L R L 1 1 1 0 0 0 2 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 10 0 1088.5462 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;W5X314 P02545 51 60 LMNA Prelamin-A/C;Lamin-A/C yes no 2 1.3636E-08 158.07 4 2 0.68212 0.94188 55.908 6 Median 0.64142 0.88106 12.726 4 0 Median 1.5652 2.5277 3.2779 2 0 Median 478750000 265650000 213110000 370460000 225550000 144910000 108300000 40101000 68196000 10950 1229 11246 39196;39197;39198;39199;39200;39201 58845;58846;58847;58848;58849;58850;58851;58852;58853;58854 58847 10 SLETENSALQLQVTER RELNDRLAVYIDKVRSLETENSALQLQVTE LETENSALQLQVTEREEVRGRELTGLKALY R S L E R E 1 1 1 0 0 2 3 0 0 0 3 0 0 0 0 2 2 0 0 1 0 0 16 0 1816.9167 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;A0A0D9SFY5 P20700 52 67 LMNB1 Lamin-B1 yes no 2 1.3385E-72 244.73 4 1 1.2464 1.7523 22.162 4 Median 1.2233 1.7156 11.354 3 0 Median 1.778 2.4575 NaN 1 0 Median 20924000 9015100 11908000 11198000 5556700 5641700 9725200 3458400 6266800 10951 1285 11247 39202;39203;39204;39205;39206 58855;58856;58857;58858;58859 58855 5 SLETENSALQLQVTEREEVR RELNDRLAVYIDKVRSLETENSALQLQVTE NSALQLQVTEREEVRGRELTGLKALYETEL R S L V R G 1 2 1 0 0 2 5 0 0 0 3 0 0 0 0 2 2 0 0 2 0 0 20 1 2330.1714 P20700;E9PBF6;A0A0D9SFE5;Q6DC98;A0A0D9SFY5 P20700 52 71 LMNB1 Lamin-B1 yes no 3 5.6992E-33 135.09 4 2 1.4803 2.1344 17.349 6 Median 1.361 1.8526 16.004 4 0 Median 1.6077 2.4683 5.0204 2 0 Median 170750000 66737000 104010000 109530000 42147000 67387000 61214000 24589000 36625000 10952 1285 11248 39207;39208;39209;39210;39211;39212 58860;58861;58862;58863;58864;58865;58866;58867;58868;58869;58870;58871;58872 58866 13 SLEYCSTASIDSENPPDLNK ELASLDCYNHLAEWKSLEYCSTASIDSENP STASIDSENPPDLNKIWSEPFYQETYLPYM K S L N K I 1 0 2 2 1 0 2 0 0 1 2 1 0 0 2 4 1 0 1 0 0 0 20 0 2238.9951 P78527 P78527 3010 3029 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 5.1098E-51 192.65 4 0.44305 0.55957 3.2064 3 Plateau 0.44305 0.55957 3.2064 3 0 Plateau NaN NaN NaN 0 0 Median 34035000 22551000 11484000 34035000 22551000 11484000 0 0 0 10953 1427 11249 39213;39214;39215;39216 58873;58874;58875;58876;58877;58878;58879;58880 58876 8 SLEYLDLSFNQMTK QLKEDAVSAALKGLKSLEYLDLSFNQMTKL KSLEYLDLSFNQMTKLPSGLPVSLLTLYLD K S L T K L 0 0 1 1 0 1 1 0 0 0 3 1 1 1 0 2 1 0 1 0 0 0 14 0 1687.8127 CON__Q05443 CON__Q05443 189 202 yes yes 2 1.0522E-05 120.45 1 0.76026 0.98825 NaN 1 Median 0.76026 0.98825 NaN 1 0 Median NaN NaN NaN 0 0 Median 120660000 68112000 52552000 120660000 68112000 52552000 0 0 0 + 10954 966 11250 39217 58881;58882;58883 58883 3 SLFAHDDSVMYLQFVPK RNVKIWGLDFGDCHKSLFAHDDSVMYLQFV FAHDDSVMYLQFVPKSHLFFTAGKDHKIKQ K S L P K S 1 0 0 2 0 1 0 0 1 0 2 1 1 2 1 2 0 0 1 2 0 0 17 0 1995.9764 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 628 644 WDR3 WD repeat-containing protein 3 yes no 3 0.0001213 49.223 1 0.70014 1.0609 NaN 1 Median NaN NaN NaN 0 0 Median 0.70014 1.0609 NaN 1 0 Median 14046000 7536900 6509200 0 0 0 14046000 7536900 6509200 10955 1576 11251 39218 58884 58884 718 1 SLFGQLHPPDEGHGD DHTTMNDDARTELYRSLFGQLHPPDEGHGD SLFGQLHPPDEGHGD_______________ R S L G D - 0 0 0 2 0 1 1 3 2 0 2 0 0 1 2 1 0 0 0 0 0 0 15 0 1604.7219 Q9NY61;A0A087WTH8 Q9NY61 546 560 AATF Protein AATF yes no 2;3 3.6854E-05 76.332 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 87842000 0 0 87842000 0 0 0 0 0 10956 1767 11252 39219;39220;39221;39222 58885;58886;58887;58888 58888 4 SLFIGEK QGLNFTSKTAEGHPKSLFIGEKAVLLKTKK KTAEGHPKSLFIGEKAVLLKTKKKGQKKSG K S L E K A 0 0 0 0 0 0 1 1 0 1 1 1 0 1 0 1 0 0 0 0 0 0 7 0 792.43815 P42696;A2A2V2 P42696 400 406 RBM34 RNA-binding protein 34 yes no 2 0.045516 52.636 1 0.72185 0.89178 NaN 1 Median 0.72185 0.89178 NaN 1 0 Median NaN NaN NaN 0 0 Median 17675000 8877600 8797600 17675000 8877600 8797600 0 0 0 10957 1339 11253 39223 58889 58889 1 SLFLGQK TEGTPADGFTVLSTKSLFLGQKLNLIHSEI GFTVLSTKSLFLGQKLNLIHSEISNLAGFE K S L Q K L 0 0 0 0 0 1 0 1 0 0 2 1 0 1 0 1 0 0 0 0 0 0 7 0 791.45414 O75367 O75367 190 196 H2AFY Core histone macro-H2A.1 yes yes 2 0.0071696 121.68 5 2 0.95059 1.2627 14.585 6 Median 1.0201 1.3303 11.005 4 0 Median 0.68647 1.0837 2.3302 2 0 Median 5216400000 2533600000 2682800000 4824400000 2307200000 2517300000 391970000 226450000 165520000 10958 1198 11254 39224;39225;39226;39227;39228;39229;39230 58890;58891;58892;58893;58894;58895;58896;58897;58898;58899 58891 10 SLFPEGNPAK DLSQAMWKASHALIKSLFPEGNPAKINLKR HALIKSLFPEGNPAKINLKRPPTAGSQFKA K S L A K I 1 0 1 0 0 0 1 1 0 0 1 1 0 1 2 1 0 0 0 0 0 0 10 0 1058.5397 E9PDF6;B0I1S9;O43795 E9PDF6 552 561 MYO1B Unconventional myosin-Ib yes no 2 0.037213 40.352 1 1.0954 1.3688 NaN 1 Median 1.0954 1.3688 NaN 1 0 Median NaN NaN NaN 0 0 Median 7779300 3946900 3832400 7779300 3946900 3832400 0 0 0 10959 665 11255 39231 58900 58900 1 SLFSSIGEVESAK IVNYLPQNMTQDELRSLFSSIGEVESAKLI LRSLFSSIGEVESAKLIRDKVAGHSLGYGF R S L A K L 1 0 0 0 0 0 2 1 0 1 1 1 0 1 0 4 0 0 0 1 0 0 13 0 1352.6824 Q15717;M0QZR9 Q15717 38 50 ELAVL1 ELAV-like protein 1 yes no 2 0.00044555 82.171 3 1 0.28015 0.35714 NaN 1 Median 0.28015 0.35714 NaN 1 0 Median NaN NaN NaN 0 0 Median 20506000 13689000 6817300 14801000 13689000 1112400 5704900 0 5704900 10960 1515 11256 39232;39233;39234;39235 58901;58902;58903;58904 58903 4 SLFVGHMDYK TRADVDVQPYAFTTKSLFVGHMDYKYLRWQ AFTTKSLFVGHMDYKYLRWQVVDTPGILDH K S L Y K Y 0 0 0 1 0 0 0 1 1 0 1 1 1 1 0 1 0 0 1 1 0 0 10 0 1195.5696 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;B4DHR2;O60747 Q53GS0 204 213 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.0084246 49.418 1 0.44867 0.62697 NaN 1 Median NaN NaN NaN 0 0 Median 0.44867 0.62697 NaN 1 0 Median 5852400 3982600 1869800 0 0 0 5852400 3982600 1869800 10961 975 11257 39236 58905 58905 351 1 SLFVVVGDR RIRILIENGVAERQRSLFVVVGDRGKDQVV VAERQRSLFVVVGDRGKDQVVILHHMLSKA R S L D R G 0 1 0 1 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 3 0 0 9 0 990.54983 Q05CW7;E9PMU0;E9PJN6;Q9H0A0 Q9H0A0 24 32 NAT10 N-acetyltransferase 10 no no 2 5.5961E-05 129.42 3 2 0.73947 1.0269 8.7212 5 Median 0.80998 1.1023 7.2165 3 0 Median 0.59267 0.97073 1.8729 2 0 Median 753150000 438630000 314520000 526030000 294380000 231660000 227120000 144250000 82862000 10962 1730;1443 11258 39237;39238;39239;39240;39241 58906;58907;58908;58909;58910;58911;58912;58913 58907 8 SLGELGLEHFQAPLVR NWRSHNNLRITRILKSLGELGLEHFQAPLV LGELGLEHFQAPLVRFFLEETLVRRELPGV K S L V R F 1 1 0 0 0 1 2 2 1 0 4 0 0 1 1 1 0 0 0 1 0 0 16 0 1764.9523 Q6PK21;A0A0A0MRN5;Q05BV5;Q9NZT2;B3KMQ6;A0A087X028 Q6PK21 75 90 OGFR Opioid growth factor receptor yes no 3 0.0097756 34.954 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2707100 2707100 0 2707100 2707100 0 0 0 0 10963 389 11259 39242 58914 58914 1 SLGHGLINK GTLQSFSTVHEKFNKSLGHGLINKKRVKRK HEKFNKSLGHGLINKKRVKRKGLQNTMSVR K S L N K K 0 0 1 0 0 0 0 2 1 1 2 1 0 0 0 1 0 0 0 0 0 0 9 0 937.53451 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 361 369 WDR36 WD repeat-containing protein 36 yes no 2 1.1997E-11 115.49 1 2 0.76391 1.0507 0.83406 2 Median 0.84851 1.0569 NaN 1 0 Median 0.68774 1.0445 NaN 1 0 Median 45862000 26474000 19388000 33010000 19116000 13894000 12852000 7358400 5493800 10964 404 11260 39243;39244;39245 58915;58916;58917;58918 58918 4 SLGHGLINKK GTLQSFSTVHEKFNKSLGHGLINKKRVKRK EKFNKSLGHGLINKKRVKRKGLQNTMSVRL K S L K K R 0 0 1 0 0 0 0 2 1 1 2 2 0 0 0 1 0 0 0 0 0 0 10 1 1065.6295 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 361 370 WDR36 WD repeat-containing protein 36 yes no 3 0.042674 46.406 1 0.91011 1.1311 NaN 1 Median 0.91011 1.1311 NaN 1 0 Median NaN NaN NaN 0 0 Median 5457700 2581900 2875800 5457700 2581900 2875800 0 0 0 10965 404 11261 39246 58919 58919 1 SLGNILQAKPTSSPAK SDGEVPTAVAPAQEKSLGNILQAKPTSSPA LGNILQAKPTSSPAKGPPQKAGPVAVQVKA K S L A K G 2 0 1 0 0 1 0 1 0 1 2 2 0 0 2 3 1 0 0 0 0 0 16 1 1610.8992 E7ETY2;B4DRA2;B4DLB1;J3KQ96;Q13428;Q59FZ2 E7ETY2 571 586 TCOF1 Treacle protein no no 3 0.046642 10.374 1 0.57749 0.82947 NaN 1 Median NaN NaN NaN 0 0 Median 0.57749 0.82947 NaN 1 0 Median 3126100 1847800 1278300 0 0 0 3126100 1847800 1278300 10966 1016;1135;1469 11262 39247 58920 58920 1 SLGPPQGEEDSVPR ECMAPLTALVKHMHRSLGPPQGEEDSVPRD RSLGPPQGEEDSVPRDLPSWMKFLHGKLGN R S L P R D 0 1 0 1 0 1 2 2 0 0 1 0 0 0 3 2 0 0 0 1 0 0 14 0 1466.7001 P78527 P78527 2107 2120 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 8.3291E-15 123.01 4 2 0.41835 0.5645 33.759 6 Median 0.42199 0.56838 8.4568 4 0 Linear 0.64105 1.0036 3.6366 2 0 Median 172320000 113270000 59055000 115190000 79933000 35261000 57126000 33333000 23793000 10967 1427 11263 39248;39249;39250;39251;39252;39253 58921;58922;58923;58924;58925;58926;58927;58928;58929;58930;58931;58932;58933 58929 13 SLGSTAGTDITVNSVILLPK KIWNMKTTECSNTFKSLGSTAGTDITVNSV AGTDITVNSVILLPKNPEHFVVCNRSNTVV K S L P K N 1 0 1 1 0 0 0 2 0 2 3 1 0 0 1 3 3 0 0 2 0 0 20 0 1985.1045 A0MNN4;Q2TAY7 A0MNN4 389 408 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes no 2 0.00017088 85.287 4 0.5032 0.6383 27.252 3 Median 0.5032 0.6383 27.252 3 0 Median NaN NaN NaN 0 0 Median 10834000 6311400 4522400 10834000 6311400 4522400 0 0 0 10968 529 11264 39254;39255;39256;39257 58934;58935;58936;58937 58934 4 SLGSVQAPSYGAR ______________________________ YRSLGSVQAPSYGARPVSSAASVYAGAGGS R S L A R P 2 1 0 0 0 1 0 2 0 0 1 0 0 0 1 3 0 0 1 1 0 0 13 0 1291.6521 F8VZY9;B2RA03;A0A024RAY2;P05783 F8VZY9 15 27 KRT18 Keratin, type I cytoskeletal 18 yes no 2 1.6857E-45 211.86 2 0.21693 0.30111 NaN 1 Median 0.21693 0.30111 NaN 1 0 Median NaN NaN NaN 0 0 Median 406970000 362250000 44716000 406970000 362250000 44716000 0 0 0 10969 252 11265 39258;39259 58938;58939;58940 58938 3 SLGSVQAPSYGARPVSSAASVYAGAGGSGSR ______________________________ SAASVYAGAGGSGSRISVSRSTSFRGGMGS R S L S R I 6 2 0 0 0 1 0 6 0 0 1 0 0 0 2 8 0 0 2 3 0 0 31 1 2853.4005 F8VZY9;B2RA03;A0A024RAY2;P05783 F8VZY9 15 45 KRT18 Keratin, type I cytoskeletal 18 yes no 3 1.7291E-24 94.006 4 2 0.23857 0.32257 65.005 6 Median 0.22901 0.31363 7.249 4 0 Median 0.75903 1.0719 5.7496 2 0 Median 191350000 146680000 44666000 174290000 138910000 35387000 17055000 7775800 9279200 10970 252 11266 39260;39261;39262;39263;39264;39265 58941;58942;58943;58944;58945;58946;58947;58948;58949;58950;58951;58952;58953 58946 13 SLGTADVHFER GTLKKAAVHYDRSGRSLGTADVHFERKADA RSGRSLGTADVHFERKADALKAMKQYNGVP R S L E R K 1 1 0 1 0 0 1 1 1 0 1 0 0 1 0 1 1 0 0 1 0 0 11 0 1230.5993 E9PB61;Q86V81 E9PB61 152 162 ALYREF THO complex subunit 4 yes no 2;3 3.326E-08 125.48 6 3 1.2068 1.6105 85.567 7 Median 1.215 1.6239 10.631 5 0 Median 0.17578 0.28618 0.99992 2 0 Median 270770000 175530000 95240000 114660000 49628000 65036000 156110000 125900000 30204000 10971 1021 11267 39266;39267;39268;39269;39270;39271;39272;39273;39274 58954;58955;58956;58957;58958;58959;58960;58961;58962;58963;58964;58965;58966;58967 58960 14 SLGTIQQCCDAIDHLCR VIYMESLALAHADEKSLGTIQQCCDAIDHL GTIQQCCDAIDHLCRIIEKKHVSLNKAKKR K S L C R I 1 1 0 2 3 2 0 1 1 2 2 0 0 0 0 1 1 0 0 0 0 0 17 0 2045.9081 P78527 P78527 1120 1136 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 1.1325E-13 132.23 4 1 0.52328 0.71144 3.4259 5 Median 0.53175 0.71277 3.9471 4 0 Median 0.47678 0.71144 NaN 1 0 Median 84399000 56615000 27784000 76904000 51321000 25584000 7494500 5294000 2200400 10972 1427 11268 39275;39276;39277;39278;39279 58968;58969;58970;58971;58972;58973;58974;58975 58974 8 SLGVDMDDKDDAHYAVQAR TAKKVQRTVLEKEMRSLGVDMDDKDDAHYA DMDDKDDAHYAVQARRSRSITRKRKREDSA R S L A R R 3 1 0 5 0 1 0 1 1 0 1 1 1 0 0 1 0 0 1 2 0 0 19 1 2104.9484 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;B4DHR2 Q53GS0 526 544 GTPBP4 Nucleolar GTP-binding protein 1 yes no 3 8.6805E-10 80.238 3 1 0.74669 0.95402 7.9999 4 Median 0.82828 1.075 8.314 3 0 Plateau 0.56656 0.9118 NaN 1 0 Median 37347000 21707000 15639000 22835000 12542000 10293000 14511000 9164700 5346700 10973 975 11269;11270 39280;39281;39282;39283 58976;58977;58978;58979;58980 58979 352 5 SLGYAYVNFQQPADAER PVLSIRVCRDMITRRSLGYAYVNFQQPADA GYAYVNFQQPADAERALDTMNFDVIKGKPI R S L E R A 3 1 1 1 0 2 1 1 0 0 1 0 0 1 1 1 0 0 2 1 0 0 17 0 1927.9064 A0A087WTT1;A0A024R9C1;P11940;A0A024R9E2;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;B3KT93;H0YBN4;E5RGH3;E5RJB9;E5RH24;E5RHG7;B1ANR0;Q6IQ30;Q13310;B1ANR1 B1ANR0 51 67 PABPC1;PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 no no 2 4.1294E-46 189.99 4 2 0.26179 0.34922 92.908 5 Median 0.25432 0.34255 8.7956 4 0 Median 1.7807 2.7036 NaN 1 0 Median 117150000 78449000 38701000 88240000 70316000 17924000 28910000 8132800 20777000 10974 676;217 11271 39284;39285;39286;39287;39288;39289 58981;58982;58983;58984;58985;58986;58987;58988;58989;58990 58986 10 SLHDALCVLAQTVK VLRGATQQILDEAERSLHDALCVLAQTVKD RSLHDALCVLAQTVKDSRTVYGGGCSEMLM R S L V K D 2 0 0 1 1 1 0 0 1 0 3 1 0 0 0 1 1 0 0 2 0 0 14 0 1553.8236 V9HW96;P78371;F5GWF6;F8VQ14;B7Z4R3;Q9H369 V9HW96 389 402 HEL-S-100n;CCT2 T-complex protein 1 subunit beta yes no 3 0.0021922 51.004 3 0.28146 0.35722 16.762 2 Median 0.28146 0.35722 16.762 2 0 Median NaN NaN NaN 0 0 Median 16757000 13539000 3217200 16757000 13539000 3217200 0 0 0 10975 1426 11272 39290;39291;39292 58991;58992;58993 58992 3 SLHHPNIVGYR SVYQKRLMDEAKILKSLHHPNIVGYRAFTE KILKSLHHPNIVGYRAFTEANDGSLCLAME K S L Y R A 0 1 1 0 0 0 0 1 2 1 1 0 0 0 1 1 0 0 1 1 0 0 11 0 1291.6786 V9HWH0;Q96KB5;E5RFX4 V9HWH0 91 101 HEL164;PBK Lymphokine-activated killer T-cell-originated protein kinase yes no 3 0.0015666 57.836 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5098500 5098500 0 5098500 5098500 0 0 0 0 10976 1691 11273 39293 58994;58995 58995 2 SLHPIHQGITELSR QSWRRASMKETNRRKSLHPIHQGITELSRS KSLHPIHQGITELSRSISVDLAESKRLGCL K S L S R S 0 1 0 0 0 1 1 1 2 2 2 0 0 0 1 2 1 0 0 0 0 0 14 0 1586.8529 Q4G1A1;A8K3X3;Q9H410;Q5JW53;Q5JW54;Q5JW57 Q4G1A1 93 106 DSN1 Kinetochore-associated protein DSN1 homolog yes no 3 0.00075359 86.291 1 1 0.57211 0.73443 NaN 1 Median NaN NaN NaN 0 0 Median 0.57211 0.73443 NaN 1 0 Median 15248000 14073000 1175800 11593000 11593000 0 3655500 2479800 1175800 10977 599 11274 39294;39295 58996;58997;58998 58998 3 SLHSAGPPLLAVTAAPPAQPLAK LNIPHPSVISSPLLKSLHSAGPPLLAVTAA LLAVTAAPPAQPLAKKKGVKRKADTTTPTP K S L A K K 6 0 0 0 0 1 0 1 1 0 4 1 0 0 5 2 1 0 0 1 0 0 23 0 2206.2474 A0A024RCR5;A0A0G2JK44;P25440;H0Y6K2;A0A140T9E9;X5CF57;A0A140T9V2;U3KQA6;A0A0G2JHL0;A0A140T9F7;E9PIQ3;H0Y799;A0A140T9X8 A0A024RCR5 253 275 BRD2 Bromodomain-containing protein 2 yes no 3 1.6971E-09 107.18 4 2 0.62361 0.79243 9.162 6 Median 0.64792 0.83417 8.9689 4 0 Median 0.50333 0.76369 4.8174 2 0 Median 80824000 52621000 28203000 45158000 28243000 16915000 35666000 24378000 11287000 10978 300 11275 39296;39297;39298;39299;39300;39301 58999;59000;59001;59002;59003;59004;59005;59006;59007;59008;59009;59010;59011;59012;59013;59014 59006 16 SLHSATTIGNK TWNKPSLSGVAPLPRSLHSATTIGNKMYVF PLPRSLHSATTIGNKMYVFGGWVPLVMDDV R S L N K M 1 0 1 0 0 0 0 1 1 1 1 1 0 0 0 2 2 0 0 0 0 0 11 0 1127.5935 A6NEM2;P51610;Q05C05 A6NEM2 256 266 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 2.653E-06 111.61 2 2 0.98271 1.4862 22.363 3 Plateau 0.75506 0.95407 NaN 1 0 Median 0.96045 1.3652 12.013 2 0 Median 20203000 12817000 7386100 7752200 6278100 1474000 12451000 6538600 5912000 10979 564 11276 39302;39303;39304;39305 59015;59016;59017;59018;59019;59020 59019 6 SLICSISNEVPEHPCVSPVSNHVYER ______________________________ EHPCVSPVSNHVYERRLIEKYIAENGTDPI M S L E R R 0 1 2 0 2 0 3 0 2 2 1 0 0 0 3 5 0 0 1 4 0 0 26 0 3008.412 Q9UMS4;F5GY56 Q9UMS4 2 27 PRPF19 Pre-mRNA-processing factor 19 yes no 3 1.2318E-16 118.22 4 0.72574 0.98545 7.3579 4 Median 0.72574 0.98545 7.3579 4 0 Median NaN NaN NaN 0 0 Median 171920000 100940000 70980000 171920000 100940000 70980000 0 0 0 10980 1795 11277 39306;39307;39308;39309 59021;59022;59023;59024;59025 59022 5 SLIEKNSWSSLEDYFK STDLKYRKQPWGLVKSLIEKNSWSSLEDYF LIEKNSWSSLEDYFKQLESDLLIEESVLNQ K S L F K Q 0 0 1 1 0 0 2 0 0 1 2 2 0 1 0 4 0 1 1 0 0 0 16 1 1944.9469 C9J7B8;E9PHT3;B3KSA7;Q8IYS0;B3KUR5 C9J7B8 263 278 GRAMD1C GRAM domain-containing protein 1C yes no 3 0.0429 17.917 1 0.94233 1.1743 NaN 1 Median 0.94233 1.1743 NaN 1 0 Median NaN NaN NaN 0 0 Median 14038000 6850800 7186800 14038000 6850800 7186800 0 0 0 10981 773 11278 39310 59026 59026 1 SLIGVEYKPVSATGAEDK DIAVQELLQLKAQYKSLIGVEYKPVSATGA GVEYKPVSATGAEDKDKKKKEKENKSEKQN K S L D K D 2 0 0 1 0 0 2 2 0 1 1 2 0 0 1 2 1 0 1 2 0 0 18 1 1862.9626 P07814;V9GYZ6;Q3KQZ8;B4DKX5 P07814 944 961 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 1.3694E-14 140.03 2 0.46622 0.5516 NaN 1 Median 0.46622 0.5516 NaN 1 0 Median NaN NaN NaN 0 0 Median 3907400 2997800 909680 3907400 2997800 909680 0 0 0 10982 1242 11279 39311;39312 59027;59028 59027 2 SLIINTFYSNK ______________________________ ______________________________ M S L N K E 0 0 2 0 0 0 0 0 0 2 1 1 0 1 0 2 1 0 1 0 0 0 11 0 1298.6871 Q58FF6 Q58FF6 2 12 HSP90AB4P Putative heat shock protein HSP 90-beta 4 yes yes 2 0.00015506 122.96 4 1 0.41433 0.51819 7.1523 4 Median 0.41433 0.51819 7.1523 4 0 Median NaN NaN NaN 0 0 Median 73612000 51009000 22603000 70798000 51009000 19790000 2813500 0 2813500 10983 1550 11280 39313;39314;39315;39316;39317 59029;59030;59031;59032;59033;59034;59035;59036;59037 59036 9 SLIPAEGTLSK SFFKEYGQIESVRFRSLIPAEGTLSKKLAA VRFRSLIPAEGTLSKKLAAIKRKIHPDQKN R S L S K K 1 0 0 0 0 0 1 1 0 1 2 1 0 0 1 2 1 0 0 0 0 0 11 0 1114.6234 P42696 P42696 218 228 RBM34 RNA-binding protein 34 yes yes 2 0.001492 109.83 4 2 1.0246 1.3288 10.959 6 Median 1.0316 1.2991 6.0129 4 0 Median 1.0246 1.5464 0.023095 2 0 Median 100830000 50638000 50188000 68447000 35421000 33025000 32380000 15217000 17163000 10984 1339 11281 39318;39319;39320;39321;39322;39323 59038;59039;59040;59041;59042;59043;59044;59045;59046;59047 59040 10 SLIVDQVQK ACVSPGVTVVISPLRSLIVDQVQKLTSLDI VISPLRSLIVDQVQKLTSLDIPATYLTGDK R S L Q K L 0 0 0 1 0 2 0 0 0 1 1 1 0 0 0 1 0 0 0 2 0 0 9 0 1028.5866 H0YNU5;B2RAN0;P54132;B7ZKN7;B7Z2X2 H0YNU5 718 726 BLM Bloom syndrome protein yes no 2 0.006913 60.589 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 10985 725 11282 39324 59048 59048 1 SLIVEGKR EDEDDEEEEEEEKEKSLIVEGKREKKKVER EEEEKEKSLIVEGKREKKKVERLTMQVSSL K S L K R E 0 1 0 0 0 0 1 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 8 1 900.53927 B4DNW3;P35659;B4DFG0;D6R9L5 P35659 51 58 DEK Protein DEK no no 2 0.010156 104.21 2 2 0.6506 0.98261 16.453 4 Median 0.85363 1.1327 3.1789 2 0 Median 0.50626 0.85456 2.8241 2 0 Median 89530000 54746000 34784000 37727000 20818000 16909000 51803000 33928000 17876000 10986 1322;843 11283 39325;39326;39327;39328 59049;59050;59051;59052;59053;59054 59050 6 SLLALGNVINALADSK GAKGTRFVEGTNINRSLLALGNVINALADS LLALGNVINALADSKRKNQHIPYRNSKLTR R S L S K R 3 0 2 1 0 0 0 1 0 1 4 1 0 0 0 2 0 0 0 1 0 0 16 0 1597.9039 B2R6H3;Q8NI77;Q4G194 B2R6H3 284 299 KIF18A Kinesin-like protein;Kinesin-like protein KIF18A yes no 2 3.2507E-15 155.08 6 0.70466 0.89398 0.80552 2 Median 0.70466 0.89398 0.80552 2 0 Median NaN NaN NaN 0 0 Median 19636000 12240000 7396400 19636000 12240000 7396400 0 0 0 10987 699 11284 39329;39330;39331;39332;39333;39334 59055;59056;59057;59058;59059;59060;59061 59057 7 SLLCHLPR EADLLFSFGFEEELKSLLCHLPRIYQAFLM GFEEELKSLLCHLPRIYQAFLMSATFNEDV K S L P R I 0 1 0 0 1 0 0 0 1 0 3 0 0 0 1 1 0 0 0 0 0 0 8 0 994.53822 Q9NY93;Q53HB9;H7C3E9;G3V0G3 Q9NY93 182 189 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 3 0.010074 42.109 2 1.0788 1.4542 16.05 2 Median 1.0788 1.4542 16.05 2 0 Median NaN NaN NaN 0 0 Median 13677000 6058300 7618500 13677000 6058300 7618500 0 0 0 10988 1768 11285 39335;39336 59062;59063;59064;59065 59062 4 SLLDACESR DDIQKRENEVLEAWKSLLDACESRRVRLVD VLEAWKSLLDACESRRVRLVDTGDKFRFFS K S L S R R 1 1 0 1 1 0 1 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 9 0 1049.4812 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24 B2ZZ89 1895 1903 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.0036586 96.034 4 1.0291 1.4025 12.673 3 Median 1.0291 1.4025 12.673 3 0 Median NaN NaN NaN 0 0 Median 60756000 37168000 23589000 60756000 37168000 23589000 0 0 0 10989 346 11286 39337;39338;39339;39340 59066;59067;59068;59069;59070;59071 59070 6 SLLDGNIDSSQYEDSLR VDVEDYYPAFLDMVRSLLDGNIDSSQYEDS LDGNIDSSQYEDSLREMFTIHAYIAFTMDK R S L L R E 0 1 1 3 0 1 1 1 0 1 3 0 0 0 0 4 0 0 1 0 0 0 17 0 1910.8858 Q96ST3;B3KQE3 Q96ST3 968 984 SIN3A Paired amphipathic helix protein Sin3a yes no 2 1.2144E-06 122.66 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2414800 2414800 0 2414800 2414800 0 0 0 0 10990 1701 11287 39341;39342 59072;59073 59072 2 SLLEGEGSSGGGGR LDIKIRLENEIQTYRSLLEGEGSSGGGGRG RSLLEGEGSSGGGGRGGGSFGGGYGGGSSG R S L G R G 0 1 0 0 0 0 2 6 0 0 2 0 0 0 0 3 0 0 0 0 0 0 14 0 1261.5899 CON__P13645;P13645 CON__P13645 451 464 KRT10 Keratin, type I cytoskeletal 10 yes no 2 2.0513E-38 187.42 1 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 410690000 410690000 0 61355000 61355000 0 349330000 349330000 0 + 10991 960 11288 39343;39344;39345;39346 59074;59075;59076;59077 59074 4 SLLESTYQR NNGATGGQLNTQNSRSLLESTYQRKAEQLM NTQNSRSLLESTYQRKAEQLMSDENCFKLM R S L Q R K 0 1 0 0 0 1 1 0 0 0 2 0 0 0 0 2 1 0 1 0 0 0 9 0 1095.556 Q96ST3;B3KQE3 Q96ST3 1044 1052 SIN3A Paired amphipathic helix protein Sin3a yes no 2 0.015294 59.245 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5180200 5180200 0 2781500 2781500 0 2398800 2398800 0 10992 1701 11289 39347;39348 59078;59079 59078 2 SLLGIDTEDAIQGR EVARLQLQGLDLSSRSLLGIDTEDAIQGRN RSLLGIDTEDAIQGRNESCDISKEHTSETT R S L G R N 1 1 0 2 0 1 1 2 0 2 2 0 0 0 0 1 1 0 0 0 0 0 14 0 1486.7627 P49454 P49454 1750 1763 CENPF Centromere protein F yes yes 2 7.9434E-10 145.91 2 1 0.81865 1.1039 58.913 3 Median 0.6948 0.93163 23.989 2 0 Median 1.6071 2.4753 NaN 1 0 Median 32968000 12648000 20320000 9913900 5431800 4482100 23054000 7216400 15838000 10993 1351 11290 39349;39350;39351 59080;59081;59082;59083;59084;59085 59083 6 SLLGMLSDLQVYK ERERSGEAVDRSLLRSLLGMLSDLQVYKDS LRSLLGMLSDLQVYKDSFELKFLEETNCLY R S L Y K D 0 0 0 1 0 1 0 1 0 0 4 1 1 0 0 2 0 0 1 1 0 0 13 0 1465.7851 Q13619;A0A0A0MR50;B2RBV7 Q13619 216 228 CUL4A Cullin-4A yes no 2 4.0267E-05 79.659 2 0.39404 0.60012 14.505 2 Median NaN NaN NaN 0 0 Median 0.39404 0.60012 14.505 2 0 Median 37180000 25911000 11269000 0 0 0 37180000 25911000 11269000 10994 1474 11291 39352;39353 59086;59087;59088 59088 663 3 SLLHGDFHAFSAGPGLFSYIR LSLFRRLSDQRSKERSLLHGDFHAFSAGPG FHAFSAGPGLFSYIRHWDQNERFLVVLNFG R S L I R H 2 1 0 1 0 0 0 3 2 1 3 0 0 3 1 3 0 0 1 0 0 0 21 0 2291.1487 B4E2Z3;F5GZS6;J3KPF3;P08195;F5GZI0 B4E2Z3 416 436 SLC3A2 4F2 cell-surface antigen heavy chain yes no 3 0.036015 13.052 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6435000 2125400 4309500 0 0 0 6435000 2125400 4309500 10995 889 11292 39354 59089 59089 1 SLLIDFFR AGDDFDVTEDYRRLKSLLIDFFRGPTVSNI EDYRRLKSLLIDFFRGPTVSNIRLAGLEYV K S L F R G 0 1 0 1 0 0 0 0 0 1 2 0 0 2 0 1 0 0 0 0 0 0 8 0 1009.5597 A8K800;Q9H7B2;Q5VXN0;B4DWS5 A8K800 161 168 RPF2 Ribosome production factor 2 homolog yes no 2 0.0044012 116.9 5 2 0.70086 0.97893 6.5147 5 Median 0.71989 0.97893 6.9592 3 0 Median 0.64679 0.94505 7.9751 2 0 Median 123630000 66619000 57012000 98068000 51151000 46917000 25563000 15468000 10095000 10996 637 11293 39355;39356;39357;39358;39359;39360;39361 59090;59091;59092;59093;59094;59095;59096;59097;59098;59099;59100;59101;59102 59093 13 SLLINAVEASCIR ATIHALHVLESGGFRSLLINAVEASCIRTR FRSLLINAVEASCIRTRELQSMADQEQVSP R S L I R T 2 1 1 0 1 0 1 0 0 2 2 0 0 0 0 2 0 0 0 1 0 0 13 0 1444.7708 B3KMB7;A0A087WTV6;A0A024R3Q9;Q4W8W1;A0A087WZR9;A0A0S2Z5U6;Q96C36;J3KR12;B4DQK8;E7D7X9;A0A024R8U9;P32322;Q2TU78;B7Z8T1;J3QKT4;E2QRB3;E7D7Y0;A0A1B2JLU7;Q8TBX0 E7D7X9 252 264 PYCR2;P5CR2;PYCR1;PIG45 Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 2;Pyrroline-5-carboxylate reductase 1, mitochondrial no no 2 0.00019037 112.13 3 2 0.7208 0.91591 20.035 3 Median 0.77176 1.0938 NaN 1 0 Median 0.63664 0.81953 15.723 2 0 Median 14530000 7459900 7070500 5707200 1930500 3776700 8823200 5529400 3293700 10997 204;104 11294 39362;39363;39364;39365;39366 59103;59104;59105;59106;59107;59108;59109 59104 7 SLLLGR LPYTFAAPESYEELRSLLLGRSMEEQLLVV APESYEELRSLLLGRSMEEQLLVVERIQKC R S L G R S 0 1 0 0 0 0 0 1 0 0 3 0 0 0 0 1 0 0 0 0 0 0 6 0 657.41736 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 437 442 NOP14 Nucleolar protein 14 yes no 2 0.036898 101.72 3 0.95832 1.2746 10.913 3 Median 0.95832 1.2746 10.913 3 0 Median NaN NaN NaN 0 0 Median 36230000 19827000 16403000 36230000 19827000 16403000 0 0 0 10998 652 11295 39367;39368;39369 59110;59111;59112 59112 3 SLLLKPHQR DADTKEVFAGKIVPKSLLLKPHQREKMPME GKIVPKSLLLKPHQREKMPMEISIHRSLAH K S L Q R E 0 1 0 0 0 1 0 0 1 0 3 1 0 0 1 1 0 0 0 0 0 0 9 1 1090.6611 B2R841;P53350;Q58A51;I3L387 B2R841 87 95 PLK1;Plk-1 delta Serine/threonine-protein kinase PLK;Serine/threonine-protein kinase PLK1 yes no 3 0.022796 47.603 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4984400 4984400 0 4984400 4984400 0 0 0 0 10999 714 11296 39370 59113 59113 1 SLLNEIESIYDER GINFKQNDTKVLRSKSLLNEIESIYDERQE SKSLLNEIESIYDERQEQATEENAGVPVGP K S L E R Q 0 1 1 1 0 0 3 0 0 2 2 0 0 0 0 2 0 0 1 0 0 0 13 0 1579.773 Q96ST3 Q96ST3 748 760 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 0.00051334 100.04 2 0.6765 0.94809 45.894 2 Median 0.6765 0.94809 45.894 2 0 Median NaN NaN NaN 0 0 Median 4924100 2967000 1957100 4924100 2967000 1957100 0 0 0 11000 1701 11297 39371;39372 59114;59115;59116 59115 3 SLLNKPK ______________________________ ______________________________ M S L P K S 0 0 1 0 0 0 0 0 0 0 2 2 0 0 1 1 0 0 0 0 0 0 7 1 798.49634 P62316;K7ERG4 P62316 2 8 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 2 0.0058968 121.68 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9905700 9905700 0 9905700 9905700 0 0 0 0 11001 1408 11298 39373 59117 59117 1 SLLNLLSSQEEDFNSK SVTQRTAFQIRQFQRSLLNLLSSQEEDFNS LLNLLSSQEEDFNSKEALLLVTVLTSLSKL R S L S K E 0 0 2 1 0 1 2 0 0 0 4 1 0 1 0 4 0 0 0 0 0 0 16 0 1822.8949 H3BP78;F8W7R3;B3KNW8;B7ZMF2;Q9NVI1 H3BP78 732 747 FANCI Fanconi anemia group I protein yes no 2 3.6029E-34 190.85 3 0.54244 0.689 11.537 2 Median 0.54244 0.689 11.537 2 0 Median NaN NaN NaN 0 0 Median 6055300 4922300 1133000 6055300 4922300 1133000 0 0 0 11002 761 11299 39374;39375;39376 59118;59119;59120 59119 3 SLLPDFLQTPK KNAPAGQETQRGGSKSLLPDFLQTPKEVVC GGSKSLLPDFLQTPKEVVCTTQNTPTVKKS K S L P K E 0 0 0 1 0 1 0 0 0 0 3 1 0 1 2 1 1 0 0 0 0 0 11 0 1257.6969 H0YNU5;B2RAN0;P54132;Q3B7X0;H0YLV8 H0YNU5 106 116 BLM Bloom syndrome protein yes no 2 0.0010635 112.75 4 0.8991 1.1444 32.103 3 Plateau 0.8991 1.1444 32.103 3 0 Plateau NaN NaN NaN 0 0 Median 21634000 14209000 7424400 21634000 14209000 7424400 0 0 0 11003 725 11300 39377;39378;39379;39380 59121;59122;59123;59124;59125;59126 59121 6 SLLPLSTSLDHR PKEKPETLIKKRKARSLLPLSTSLDHRSKE KARSLLPLSTSLDHRSKEELHQDCLVLATA R S L H R S 0 1 0 1 0 0 0 0 1 0 4 0 0 0 1 3 1 0 0 0 0 0 12 0 1337.7303 B7ZLC9;Q8TEQ6 B7ZLC9 846 857 GEMIN5 Gem-associated protein 5 yes no 3 0.024578 34.75 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4642600 4642600 0 4642600 4642600 0 0 0 0 11004 924 11301 39381 59127 59127 1 SLLPTLEK GLGKEESQNEKQTKKSLLPTLEKKLTRVPS NEKQTKKSLLPTLEKKLTRVPSKSLDLNKN K S L E K K 0 0 0 0 0 0 1 0 0 0 3 1 0 0 1 1 1 0 0 0 0 0 8 0 899.53278 C9J7B8;E9PHT3;B3KSA7;Q8IYS0 C9J7B8 74 81 GRAMD1C GRAM domain-containing protein 1C yes no 2 0.012625 98.629 3 0.82907 1.0469 26.255 3 Median 0.82907 1.0469 26.255 3 0 Median NaN NaN NaN 0 0 Median 40826000 23937000 16889000 40826000 23937000 16889000 0 0 0 11005 773 11302 39382;39383;39384 59128;59129;59130;59131 59128 4 SLLPVKPVEIEIETPEQAK EPVLGDVRESTAFSRSLLPVKPVEIEIETP VKPVEIEIETPEQAKTRERSEKIKLEFETY R S L A K T 1 0 0 0 0 1 4 0 0 2 2 2 0 0 3 1 1 0 0 2 0 0 19 1 2119.1776 A0A024R2M8;X5DRB1;A8K146;Q01831;D9I4E1;D2CPI9;D2CPJ0;D2CPK1;E7EUB5 A0A024R2M8 156 174 XPC DNA repair protein complementing XP-C cells yes no 3 1.368E-23 98.882 4 2 0.75903 0.93943 11.688 5 Median 0.76654 0.93943 10.1 3 0 Median 0.55081 0.88548 13.609 2 0 Median 212370000 119930000 92440000 137470000 73283000 64186000 74898000 46643000 28255000 11006 89 11303 39385;39386;39387;39388;39389;39390 59132;59133;59134;59135;59136;59137;59138;59139;59140;59141 59135 10 SLLQALNEVK KLQGEFQLRLRQLEKSLLQALNEVKGRILD RQLEKSLLQALNEVKGRILDDDTIITTLEN K S L V K G 1 0 1 0 0 1 1 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 10 0 1113.6394 Q14204 Q14204 3748 3757 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0020512 109.44 2 0.46267 0.60476 NaN 1 Median 0.46267 0.60476 NaN 1 0 Median NaN NaN NaN 0 0 Median 2063200 1196900 866310 2063200 1196900 866310 0 0 0 11007 1483 11304 39391;39392 59142;59143 59142 2 SLLQQLENVTK VAIFTLINEINKKGKSLLQQLENVTKERQM KKGKSLLQQLENVTKERQMKLLQQQNDITG K S L T K E 0 0 1 0 0 2 1 0 0 0 3 1 0 0 0 1 1 0 0 1 0 0 11 0 1271.7085 H0Y612;A0A024R0F6;Q9UPN9 H0Y612 116 126 TRIM33 E3 ubiquitin-protein ligase TRIM33 yes no 2 0.00058058 96.143 3 0.48104 0.61757 NaN 1 Median 0.48104 0.61757 NaN 1 0 Median NaN NaN NaN 0 0 Median 5681600 4016400 1665100 5681600 4016400 1665100 0 0 0 11008 34 11305 39393;39394;39395 59144;59145;59146;59147 59146 4 SLLSAEEAAK LSKVHFTAERSSYYKSLLSAEEAAKQKKEK SSYYKSLLSAEEAAKQKKEKVWAHYEEQPV K S L A K Q 3 0 0 0 0 0 2 0 0 0 2 1 0 0 0 2 0 0 0 0 0 0 10 0 1017.5342 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B4E299;B3KU67 A0A140VK49 642 651 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.0064785 89.886 1 0.46474 0.60586 NaN 1 Median 0.46474 0.60586 NaN 1 0 Median NaN NaN NaN 0 0 Median 4757000 3086300 1670700 4757000 3086300 1670700 0 0 0 11009 508 11306 39396 59148 59148 1 SLLTYGR SHLDGTTPVCEDIGRSLLTYGRRIPLAEWE PVCEDIGRSLLTYGRRIPLAEWESRIAEVD R S L G R R 0 1 0 0 0 0 0 1 0 0 2 0 0 0 0 1 1 0 1 0 0 0 7 0 808.4443 P31930;B4DUL5 P31930 416 422 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes no 2 0.038862 55.441 1 0.81596 1.0422 NaN 1 Median NaN NaN NaN 0 0 Median 0.81596 1.0422 NaN 1 0 Median 3752300 1833400 1918900 0 0 0 3752300 1833400 1918900 11010 1310 11307 39397 59149 59149 1 SLLVIPNTLAVNAAQDSTDLVAK SMGSREQLAIAEFARSLLVIPNTLAVNAAQ LAVNAAQDSTDLVAKLRAFHNEAQVNPERK R S L A K L 4 0 2 2 0 1 0 0 0 1 4 1 0 0 1 2 2 0 0 3 0 0 23 0 2352.29 F5H282;E7EQR6;P17987 F5H282 220 242 TCP1 T-complex protein 1 subunit alpha yes no 2 8.1185E-07 103.6 3 0.64991 0.85063 NaN 1 Median 0.64991 0.85063 NaN 1 0 Median NaN NaN NaN 0 0 Median 3266200 2542200 724030 3266200 2542200 724030 0 0 0 11011 1011 11308 39398;39399;39400 59150;59151;59152;59153 59150 4 SLLVQTK GCVVGTKKRVLTLRKSLLVQTKRRALEKID KRVLTLRKSLLVQTKRRALEKIDLKFIDTT K S L T K R 0 0 0 0 0 1 0 0 0 0 2 1 0 0 0 1 1 0 0 1 0 0 7 0 787.48035 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;B3KS36;Q49AJ9;Q9BT63 P39023 350 356 RPL3;rpl3 60S ribosomal protein L3 yes no 2 0.0053073 124.34 4 2 0.73552 1.0241 5.686 6 Median 0.77495 1.0155 6.906 4 0 Median 0.66059 1.046 3.3654 2 0 Median 2277100000 1280000000 997080000 2205200000 1237600000 967560000 71850000 42327000 29524000 11012 1330 11309 39401;39402;39403;39404;39405;39406 59154;59155;59156;59157;59158;59159;59160;59161;59162;59163;59164 59154 11 SLNDLIEER NDGSLCLAMEYGGEKSLNDLIEERYKASQD EYGGEKSLNDLIEERYKASQDPFPAAIILK K S L E R Y 0 1 1 1 0 0 2 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 9 0 1087.551 V9HWH0;Q96KB5;E5RFX4 V9HWH0 122 130 HEL164;PBK Lymphokine-activated killer T-cell-originated protein kinase yes no 2 0.028944 49.536 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1759800 1759800 0 1759800 1759800 0 0 0 0 11013 1691 11310 39407 59165 59165 1 SLNIIENSSAPICENKPK SINKEEVILSKAGNKSLNIIENSSAPICEN IIENSSAPICENKPKILNSEEWFAAACKKE K S L P K I 1 0 3 0 1 0 2 0 0 3 1 2 0 0 2 3 0 0 0 0 0 0 18 1 2013.0201 Q8NG31;H0YCZ2;E9PPJ1 Q8NG31 1500 1517 CASC5 Protein CASC5 yes no 3 0.023672 63.337 1 1.0517 1.2677 NaN 1 Median 1.0517 1.2677 NaN 1 0 Median NaN NaN NaN 0 0 Median 3080600 1233300 1847400 3080600 1233300 1847400 0 0 0 11014 1656 11311 39408 59166 59166 0 SLNLAPPTVAAPAPSLFPAAQMMNNGLLQQPSALMLLPCR ______________________________ GLLQQPSALMLLPCRPVLTSVALNANFVSW R S L C R P 7 1 3 0 1 3 0 1 0 0 8 0 3 1 7 3 1 0 0 1 0 0 40 0 4200.172 C9IY40;Q5T653;B4DVE2;C9JZW2;C9JZG7 C9IY40 12 51 MRPL2 39S ribosomal protein L2, mitochondrial yes no 7 0.049051 3.6024 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3044100 3044100 0 0 0 0 3044100 3044100 0 11015 932 11312 39409 59167 59167 1 SLNLTFATPLQPQSVQRPGLAR PQAVQPSRQESSCGRSLNLTFATPLQPQSV TPLQPQSVQRPGLARRPPARRAVDVGAFLR R S L A R R 2 2 1 0 0 3 0 1 0 0 4 0 0 1 3 2 2 0 0 1 0 0 22 1 2393.3179 H3BUW2;H3BTR4;B3KPB2;Q96BT3;B4DMP9 H3BUW2 130 151 CENPT Centromere protein T yes no 3 2.8111E-23 99.508 3 2 0.61298 0.81965 9.237 5 Median 0.65428 0.90576 9.0194 3 0 Median 0.52531 0.7977 2.1165 2 0 Median 82123000 52456000 29667000 35409000 21870000 13540000 46714000 30586000 16128000 11016 764 11313 39410;39411;39412;39413;39414 59168;59169;59170;59171;59172;59173;59174;59175;59176;59177 59172 10 SLNNQFASFIDK PEIQKVKSREREQIKSLNNQFASFIDKVRF QIKSLNNQFASFIDKVRFLEQQNQVLQTKW K S L D K V 1 0 2 1 0 1 0 0 0 1 1 1 0 2 0 2 0 0 0 0 0 0 12 0 1382.683 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 186 197 KRT1 Keratin, type II cytoskeletal 1 no no 2 1.65E-06 163.46 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2840800000 2840800000 0 1994000000 1994000000 0 846790000 846790000 0 + 11017 1113;1114 11314 39415;39416;39417;39418 59178;59179;59180;59181;59182 59178 5 SLNSDISYFGVGGK ESDHSGYVRPVPVPRSLNSDISYFGVGGKQ RSLNSDISYFGVGGKQAVFFVGQSARMISK R S L G K Q 0 0 1 1 0 0 0 3 0 1 1 1 0 1 0 3 0 0 1 1 0 0 14 0 1442.7042 A6NHR9 A6NHR9 227 240 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 4.7419E-06 124.42 3 0.69238 0.88375 12.813 2 Median 0.69238 0.88375 12.813 2 0 Median NaN NaN NaN 0 0 Median 10447000 4265400 6181300 10447000 4265400 6181300 0 0 0 11018 568 11315 39419;39420;39421 59183;59184;59185;59186 59183 4 SLNSIEFR LVFSRDFGLLVFVRKSLNSIEFRECREEIL LLVFVRKSLNSIEFRECREEILKFLCIFLE K S L F R E 0 1 1 0 0 0 1 0 0 1 1 0 0 1 0 2 0 0 0 0 0 0 8 0 964.49779 P78527;B4DL41 P78527 72 79 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.022172 57.177 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3286300 0 3286300 3286300 0 3286300 0 0 0 11019 1427 11316 39422;39423 59187;59188 59187 2 SLNTDVLFGLLR LDHYSAIIMDEAHERSLNTDVLFGLLREVV HERSLNTDVLFGLLREVVARRSDLKLIVTS R S L L R E 0 1 1 1 0 0 0 1 0 0 4 0 0 1 0 1 1 0 0 1 0 0 12 0 1346.7558 B4DM30;B4DET0;A8K6G9;Q92620 B4DM30 331 342 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes no 2 0.00057303 107.57 2 0.52351 0.72595 NaN 1 Median 0.52351 0.72595 NaN 1 0 Median NaN NaN NaN 0 0 Median 4086000 2728600 1357400 4086000 2728600 1357400 0 0 0 11020 624 11317 39424;39425 59189;59190 59190 2 SLPALIEQGEGFSQVLR CRGETVAKEISEAMKSLPALIEQGEGFSQV PALIEQGEGFSQVLRMQPVIHLQRIHQEVF K S L L R M 1 1 0 0 0 2 2 2 0 1 3 0 0 1 1 2 0 0 0 1 0 0 17 0 1842.984 Q53FM2;B2R9C5;Q96IY1 Q53FM2 190 206 C1orf48;NSL1 Kinetochore-associated protein NSL1 homolog yes no 2 9.4542E-34 182.07 4 2 0.47701 0.65119 6.0123 5 Median 0.50104 0.67752 3.4667 3 0 Median 0.40491 0.62063 6.7968 2 0 Median 64721000 45126000 19595000 26133000 16403000 9729500 38588000 28723000 9865500 11021 721 11318 39426;39427;39428;39429;39430;39431 59191;59192;59193;59194;59195;59196;59197;59198;59199 59193 9 SLPDFTELDLQGK SAQVQQYQQFLDASRSLPDFTELDLQGKVL SRSLPDFTELDLQGKVLPEGVGPGDIKAFQ R S L G K V 0 0 0 2 0 1 1 1 0 0 3 1 0 1 1 1 1 0 0 0 0 0 13 0 1461.7351 P22670 P22670 582 594 RFX1 MHC class II regulatory factor RFX1 yes yes 2 0.0011767 71.555 1 1 0.54634 0.78361 NaN 1 Median NaN NaN NaN 0 0 Median 0.54634 0.78361 NaN 1 0 Median 7238200 5150900 2087300 2369900 2369900 0 4868300 2781000 2087300 11022 1291 11319 39432;39433 59200;59201 59201 2 SLPDTELMK WGQKCAPMSDLTDLKSLPDTELMKDTARGQ DLTDLKSLPDTELMKDTARGQNLLQTQDHA K S L M K D 0 0 0 1 0 0 1 0 0 0 2 1 1 0 1 1 1 0 0 0 0 0 9 0 1032.5161 P46013 P46013 969 977 MKI67 Antigen KI-67 yes yes 2 0.010832 52.716 2 0.95224 1.4994 3.3339 2 Median NaN NaN NaN 0 0 Median 0.95224 1.4994 3.3339 2 0 Median 129580000 65076000 64508000 0 0 0 129580000 65076000 64508000 11023 1342 11320 39434;39435 59202;59203;59204 59203 578 3 SLPEEDVAEIQHAEEFLIKPESK VIILPKKHKKKKERKSLPEEDVAEIQHAEE EIQHAEEFLIKPESKVAKLDTSQWPLLLKN K S L S K V 2 0 0 1 0 1 6 0 1 2 2 2 0 1 2 2 0 0 0 1 0 0 23 1 2637.3174 O60832;C9IYT0;U5UA77;H7C0M1;U5U7S7;H7C2Q9 O60832 21 43 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 3;4 1.2333E-17 90.193 6 3 0.69591 0.88381 3.3328 8 Median 0.71992 0.88755 3.7632 5 0 Median 0.54058 0.88009 3.0814 3 0 Median 580730000 372220000 208510000 200210000 117540000 82666000 380530000 254680000 125840000 11024 1193 11321 39436;39437;39438;39439;39440;39441;39442;39443;39444 59205;59206;59207;59208;59209;59210;59211;59212;59213;59214;59215;59216;59217 59213 13 SLPEWLSDR SSLNEVKIYSLSCGKSLPEWLSDRKKRALQ SLSCGKSLPEWLSDRKKRALQKKDVDVRRR K S L D R K 0 1 0 1 0 0 1 0 0 0 2 0 0 0 1 2 0 1 0 0 0 0 9 0 1101.5455 Q9BSC4 Q9BSC4 19 27 NOL10 Nucleolar protein 10 yes yes 2 0.03335 43.083 1 0.82847 1.1223 NaN 1 Median NaN NaN NaN 0 0 Median 0.82847 1.1223 NaN 1 0 Median 5465000 3198900 2266100 0 0 0 5465000 3198900 2266100 11025 1710 11322 39445 59218 59218 1 SLPIYSPEK YTYIGSVVISVNPYRSLPIYSPEKVEEYRN SVNPYRSLPIYSPEKVEEYRNRNFYELSPH R S L E K V 0 0 0 0 0 0 1 0 0 1 1 1 0 0 2 2 0 0 1 0 0 0 9 0 1032.5492 E9PDF6;B0I1S9;O43795;E7EQD9;Q05CR5;C9JYW1;C9JUP5;C9K0I9 E9PDF6 60 68 MYO1B Unconventional myosin-Ib yes no 2 0.012788 59.245 1 0.97919 1.2283 NaN 1 Median 0.97919 1.2283 NaN 1 0 Median NaN NaN NaN 0 0 Median 7664300 3022400 4642000 7664300 3022400 4642000 0 0 0 11026 665 11323 39446 59219;59220 59220 2 SLPLNPK ______________________________ ______________________________ M S L P K P 0 0 1 0 0 0 0 0 0 0 2 1 0 0 2 1 0 0 0 0 0 0 7 0 767.45414 P62306;A0A0B4J254;F8W0W6 P62306 2 8 SNRPF Small nuclear ribonucleoprotein F yes no 1 0.016627 79.469 3 0.71523 0.92072 6.226 3 Plateau 0.71523 0.92072 6.226 3 0 Plateau NaN NaN NaN 0 0 Median 13616000 7857800 5758300 13616000 7857800 5758300 0 0 0 11027 1406 11324 39447;39448;39449 59221;59222;59223 59222 1 SLPLPNDK HILLHDAYMFCIIDKSLPLPNDKTLLYNPF MFCIIDKSLPLPNDKTLLYNPFPPTNESDV K S L D K T 0 0 1 1 0 0 0 0 0 0 2 1 0 0 2 1 0 0 0 0 0 0 8 0 882.48108 Q969X6;H3BSH7;A0A0J9YWM9;A0A0J9YXV4 Q969X6 610 617 CIRH1A Cirhin yes no 2 0.015955 75.738 4 0.88463 1.0974 14.058 4 Median 0.88463 1.0974 14.058 4 0 Median NaN NaN NaN 0 0 Median 106910000 57065000 49848000 106910000 57065000 49848000 0 0 0 11028 1680 11325 39450;39451;39452;39453 59224;59225;59226;59227 59226 4 SLPNEEIVQK PIEGNQAGDAAASARSLPNEEIVQKIEEVL AASARSLPNEEIVQKIEEVLSGVLDTELRY R S L Q K I 0 0 1 0 0 1 2 0 0 1 1 1 0 0 1 1 0 0 0 1 0 0 10 0 1155.6136 P18583;D3DSF7;Q3SWV4;A0JLP4;Q6ZRV7;J3QSZ5 P18583 55 64 SON Protein SON yes no 2 0.0036313 66.692 1 0.49763 0.62823 NaN 1 Median 0.49763 0.62823 NaN 1 0 Median NaN NaN NaN 0 0 Median 9861700 6006000 3855700 9861700 6006000 3855700 0 0 0 11029 1282 11326 39454 59228 59228 1 SLPNILTDDR EEEEKQKSTWKKKVKSLPNILTDDRFKVMF KKKVKSLPNILTDDRFKVMFENPDFQVDEE K S L D R F 0 1 1 2 0 0 0 0 0 1 2 0 0 0 1 1 1 0 0 0 0 0 10 0 1142.5932 Q9BSC4;B4DS83 Q9BSC4 475 484 NOL10 Nucleolar protein 10 yes no 2 0.011666 52.579 1 0.62427 0.85654 NaN 1 Median NaN NaN NaN 0 0 Median 0.62427 0.85654 NaN 1 0 Median 5792600 3449700 2342900 0 0 0 5792600 3449700 2342900 11030 1710 11327 39455 59229 59229 1 SLPNILTDDRFK EEEEKQKSTWKKKVKSLPNILTDDRFKVMF KVKSLPNILTDDRFKVMFENPDFQVDEESE K S L F K V 0 1 1 2 0 0 0 0 0 1 2 1 0 1 1 1 1 0 0 0 0 0 12 1 1417.7565 Q9BSC4;B4DS83 Q9BSC4 475 486 NOL10 Nucleolar protein 10 yes no 2;3 7.8207E-07 98.943 5 2 0.77391 1.1707 12 5 Median 0.83282 1.1085 16.946 3 0 Median 0.72523 1.1779 0.87011 2 0 Median 90785000 55840000 34945000 57661000 37366000 20295000 33125000 18475000 14650000 11031 1710 11328 39456;39457;39458;39459;39460;39461;39462 59230;59231;59232;59233;59234;59235;59236;59237;59238;59239 59235 10 SLPQGHFQERPETHSVPAPGGPAAQAAPAAPGLSLGEGR ETKAKDGPSIQATQKSLPQGHFQERPETHS QAAPAAPGLSLGEGREAATSSDDEEEDDVV K S L G R E 7 2 0 0 0 3 3 6 2 0 3 0 0 1 7 3 1 0 0 1 0 0 39 1 3841.9248 A0A024R0F1;Q9UNY4 A0A024R0F1 307 345 TTF2 Transcription termination factor 2 yes no 4;5 2.2295E-09 45.803 4 2 0.82087 1.119 7.9317 6 Median 0.8867 1.1863 9.1491 4 0 Median 0.75262 1.102 2.0996 2 0 Median 69565000 37921000 31644000 46104000 24670000 21434000 23461000 13251000 10210000 11032 33 11329 39463;39464;39465;39466;39467;39468 59240;59241;59242;59243;59244;59245;59246;59247;59248;59249;59250;59251 59245 12 SLPSSSQLK IQQSSMKSPLYLVSRSLPSSSQLKGSPQAI LYLVSRSLPSSSQLKGSPQAISRASELHLL R S L L K G 0 0 0 0 0 1 0 0 0 0 2 1 0 0 1 4 0 0 0 0 0 0 9 0 945.51311 Q8WYP5;B3KVE5;B3KTD2 Q8WYP5 1150 1158 AHCTF1 Protein ELYS yes no 2 0.031336 44.349 2 0.60835 0.94518 4.7175 2 Median NaN NaN NaN 0 0 Median 0.60835 0.94518 4.7175 2 0 Median 55794000 35058000 20735000 0 0 0 55794000 35058000 20735000 11033 1670 11330 39469;39470 59252;59253;59254 59252 3 SLPSVETLGCTSVICSDK ALGTRRMAKKNAIVRSLPSVETLGCTSVIC SVETLGCTSVICSDKTGTLTTNQMSVCRMF R S L D K T 0 0 0 1 2 0 1 1 0 1 2 1 0 0 1 4 2 0 0 2 0 0 18 0 1951.9231 A0A0S2Z3L2;P16615;H7C5W9;A8K9K1;Q93084;H3BTW4;Q8N3X5;Q7Z675;Q7Z6E5;O14983 A0A0S2Z3L2 335 352 ATP2A2;ATP2A3;ATP2A1;DKFZp779O2152;DKFZp779G2251 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Calcium-transporting ATPase;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 yes no 2 0.00034838 86.738 2 0.52967 0.66096 NaN 1 Median 0.52967 0.66096 NaN 1 0 Median NaN NaN NaN 0 0 Median 4595400 4261300 334040 4595400 4261300 334040 0 0 0 11034 456 11331 39471;39472 59255;59256 59255 2 SLPTTVPESPNYR ANKLFGAPEPSTIARSLPTTVPESPNYRNT ARSLPTTVPESPNYRNTRTPRTPRTPQLKD R S L Y R N 0 1 1 0 0 0 1 0 0 0 1 0 0 0 3 2 2 0 1 1 0 0 13 0 1459.7307 Q6PKG0;H0YC33;E5RH50;A0A0B4J210 Q6PKG0 766 778 LARP1 La-related protein 1 yes no 2 0.0095437 73.499 1 1 0.79657 1.1045 NaN 1 Median 0.79657 1.1045 NaN 1 0 Median NaN NaN NaN 0 0 Median 4210500 694490 3516000 1241300 694490 546830 2969200 0 2969200 11035 1597 11332 39473;39474 59257;59258 59257 2 SLPVEEQPK LAKWKTAEEVAALIRSLPVEEQPKQIIVTR VAALIRSLPVEEQPKQIIVTRKGMLDPLEV R S L P K Q 0 0 0 0 0 1 2 0 0 0 1 1 0 0 2 1 0 0 0 1 0 0 9 0 1025.5393 Q6P2Q9;B4DK16;Q6JH02;Q6JH03 Q6P2Q9 1851 1859 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.016207 58.596 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16514000 16514000 0 16514000 16514000 0 0 0 0 11036 1592 11333 39475 59259 59259 1 SLPYNQPGTCYTLVALPK EPTEAYEVLCYVPARSLPYNQPGTCYTLVA YNQPGTCYTLVALPKEDPTAVACTFSCMMK R S L P K E 1 0 1 0 1 1 0 1 0 0 3 1 0 0 3 1 2 0 2 1 0 0 18 0 2021.0292 Q9Y678;B3KW21;Q8WUI6;H0Y8G2;H0Y8X7 Q9Y678 697 714 COPG1;COPG Coatomer subunit gamma-1 yes no 2 0.00026018 89.46 1 0.32366 0.41902 NaN 1 Median 0.32366 0.41902 NaN 1 0 Median NaN NaN NaN 0 0 Median 1856300 1307400 548860 1856300 1307400 548860 0 0 0 11037 1832 11334 39476 59260 59260 1 SLQALGEVIEAELR AELGMEHQAVVGAVKSLQALGEVIEAELRS KSLQALGEVIEAELRSTKHWELTAEGEEIA K S L L R S 2 1 0 0 0 1 3 1 0 1 3 0 0 0 0 1 0 0 0 1 0 0 14 0 1526.8304 Q6IBR2;K7ER00;Q9Y285;K7EK06;K7ER16 Q6IBR2 43 56 FARSLA;FARSA Phenylalanine--tRNA ligase alpha subunit yes no 2 0.00036593 102.87 4 0.47255 0.66601 28.305 2 Median 0.47255 0.66601 28.305 2 0 Median NaN NaN NaN 0 0 Median 11687000 9630400 2056800 11687000 9630400 2056800 0 0 0 11038 1152 11335 39477;39478;39479;39480 59261;59262;59263;59264 59264 3 SLQEEHVAVAQLR SKRASFAEKTAQLERSLQEEHVAVAQLREE ERSLQEEHVAVAQLREEAERRAQQQAEAER R S L L R E 2 1 0 0 0 2 2 0 1 0 2 0 0 0 0 1 0 0 0 2 0 0 13 0 1478.7841 Q15149 Q15149 1732 1744 PLEC Plectin yes yes 2;3 1.5304E-12 162.68 5 0.84777 1.1363 14.159 5 Median 0.84777 1.1363 14.159 5 0 Median NaN NaN NaN 0 0 Median 52567000 30097000 22470000 52567000 30097000 22470000 0 0 0 11039 1507 11336 39481;39482;39483;39484;39485 59265;59266;59267;59268;59269;59270;59271 59266 7 SLQEEHVAVAQLREEAER SKRASFAEKTAQLERSLQEEHVAVAQLREE EEHVAVAQLREEAERRAQQQAEAERAREEA R S L E R R 3 2 0 0 0 2 5 0 1 0 2 0 0 0 0 1 0 0 0 2 0 0 18 1 2093.0501 Q15149 Q15149 1732 1749 PLEC Plectin yes yes 3;4 0.0002691 48.391 3 0.8295 1.0611 21.165 3 Median 0.8295 1.0611 21.165 3 0 Median NaN NaN NaN 0 0 Median 17105000 9834800 7269800 17105000 9834800 7269800 0 0 0 11040 1507 11337 39486;39487;39488 59272;59273;59274 59273 3 SLQEQADAAEER MAGSSSLEAVRRKIRSLQEQADAAEERAGT KIRSLQEQADAAEERAGTLQRELDHERKLR R S L E R A 3 1 0 1 0 2 3 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 12 0 1345.611 Q1ZYL5;F5H7S3;D9YZV7;H7BYY1;H0YK48;B7Z722;B7Z596;Q59GR8;Q07413;H0YN06 Q1ZYL5 16 27 TPM1 yes no 2 8.6351E-15 154.15 7 1.6799 2.3161 38.728 2 Median 1.6799 2.3161 38.728 2 0 Median NaN NaN NaN 0 0 Median 17377000 7091100 10286000 17377000 7091100 10286000 0 0 0 11041 912 11338 39489;39490;39491;39492;39493;39494;39495 59275;59276;59277;59278;59279;59280;59281;59282;59283 59276 9 SLQESRPFSVDFFR AYRSGGYKKARAVFKSLQESRPFSVDFFRK KSLQESRPFSVDFFRKMIQFEKEQESCNMA K S L F R K 0 2 0 1 0 1 1 0 0 0 1 0 0 3 1 3 0 0 0 1 0 0 14 1 1713.8475 B3KQ21;Q9NYH9;B3KX32;Q9P1J8;J3KRR8 B3KQ21 499 512 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 3 1.0878E-05 76.868 4 2 0.86668 1.215 8.6899 6 Median 0.94401 1.2731 8.8253 4 0 Median 0.74577 1.1308 4.1221 2 0 Median 164780000 86576000 78203000 118130000 58691000 59442000 46646000 27885000 18761000 11042 768 11339 39496;39497;39498;39499;39500;39501 59284;59285;59286;59287;59288;59289;59290;59291 59286 8 SLQHQEQLEDSK MASRWQNMGTSVRRRSLQHQEQLEDSKELQ RRRSLQHQEQLEDSKELQPVVSHQETSVGA R S L S K E 0 0 0 1 0 3 2 0 1 0 2 1 0 0 0 2 0 0 0 0 0 0 12 0 1440.6845 I3L427;A0A0S2Z5C7;I3L419;A0A0S2Z5F0;I3L156;Q9BSJ6 I3L427 16 27 FAM64A Protein FAM64A yes no 2 5.0699E-05 120.06 3 1.3192 1.6847 11.257 2 Median 1.3192 1.6847 11.257 2 0 Median NaN NaN NaN 0 0 Median 3672300 1755500 1916800 3672300 1755500 1916800 0 0 0 11043 479 11340 39502;39503;39504 59292;59293;59294 59293 2 SLQQLAEER VATFNSIKELNERWRSLQQLAEERSQLLGS LNERWRSLQQLAEERSQLLGSAHEVQRFHR R S L E R S 1 1 0 0 0 2 2 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 9 0 1072.5513 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;Q9UG16 Q13813 1217 1225 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.00021598 119.27 4 0.83547 1.114 13.647 3 Median 0.83547 1.114 13.647 3 0 Median NaN NaN NaN 0 0 Median 83234000 54833000 28401000 83234000 54833000 28401000 0 0 0 11044 1476 11341 39505;39506;39507;39508 59295;59296;59297;59298;59299 59298 5 SLQSVAEER GKPVHHGVNQLKFARSLQSVAEERAGRHCG QLKFARSLQSVAEERAGRHCGALRVLNSYW R S L E R A 1 1 0 0 0 1 2 0 0 0 1 0 0 0 0 2 0 0 0 1 0 0 9 0 1017.5091 A0A024R2Q4;P61313;E7EQV9;B4DLP4;E7EX53 A0A024R2Q4 97 105 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 2 3.0646E-09 146.81 4 0.7216 1.0004 11.029 3 Plateau 0.7216 1.0004 11.029 3 0 Plateau NaN NaN NaN 0 0 Median 663840000 427770000 236080000 663840000 427770000 236080000 0 0 0 11045 92 11342 39509;39510;39511;39512 59300;59301;59302;59303;59304 59304 5 SLRPDPNFDALISK NKECPTCRKKLVSKRSLRPDPNFDALISKI RSLRPDPNFDALISKIYPSREEYEAHQDRV R S L S K I 1 1 1 2 0 0 0 0 0 1 2 1 0 1 2 2 0 0 0 0 0 0 14 1 1571.8308 X6RFN3;Q99496;Q06587;B4DVB5;A0A024RCR9;B4DW57 Q06587 96 109 RNF2;RING1 E3 ubiquitin-protein ligase RING2;E3 ubiquitin-protein ligase RING1 no no 3 0.0028024 48.391 2 0.66609 0.87822 34.009 2 Median 0.66609 0.87822 34.009 2 0 Median NaN NaN NaN 0 0 Median 13907000 8021400 5885900 13907000 8021400 5885900 0 0 0 11046 1446;1703 11343 39513;39514 59305;59306 59306 2 SLSAIYLEK RSELELTLGKLEQVRSLSAIYLEKLKTISL KLEQVRSLSAIYLEKLKTISLVIRGTQGAE R S L E K L 1 0 0 0 0 0 1 0 0 1 2 1 0 0 0 2 0 0 1 0 0 0 9 0 1022.5648 Q15149 Q15149 1216 1224 PLEC Plectin yes yes 2 0.01331 74.92 3 0.88258 1.0701 NaN 1 Median 0.88258 1.0701 NaN 1 0 Median NaN NaN NaN 0 0 Median 48603000 34988000 13616000 48603000 34988000 13616000 0 0 0 11047 1507 11344 39515;39516;39517 59307;59308;59309;59310 59309 4 SLSDNGQPGTPDPADSGGTSAK ELERVDEEEKEYTCKSLSDNGQPGTPDPAD PGTPDPADSGGTSAKESECITKPVSFLPQN K S L A K E 2 0 1 3 0 1 0 4 0 0 1 1 0 0 3 4 2 0 0 0 0 0 22 0 2057.9138 O75691 O75691 1732 1753 UTP20 Small subunit processome component 20 homolog yes yes 2 0.0017067 34.515 1 0.65156 0.87147 NaN 1 Median NaN NaN NaN 0 0 Median 0.65156 0.87147 NaN 1 0 Median 3244300 2059100 1185200 0 0 0 3244300 2059100 1185200 11048 1207 11345 39518 59311 59311 1 SLSDPCYYNK AGLTGPPRPCSFCRRSLSDPCYYNKVDRTV SFCRRSLSDPCYYNKVDRTVYQFCSPSCWT R S L N K V 0 0 1 1 1 0 0 0 0 0 1 1 0 0 1 2 0 0 2 0 0 0 10 0 1245.5336 A6NHN7;A6NHB5;Q14202 A6NHN7 554 563 ZMYM3 Zinc finger MYM-type protein 3 yes no 2 0.0066374 88.177 2 0.56779 0.73451 2.2482 2 Median 0.56779 0.73451 2.2482 2 0 Median NaN NaN NaN 0 0 Median 6924400 4347400 2577000 6924400 4347400 2577000 0 0 0 11049 565 11346 39519;39520 59312;59313;59314;59315 59313 4 SLSDTLVSTTAPSGIVNVSVK SSEPPFGPRNVIENKSLSDTLVSTTAPSGI VSTTAPSGIVNVSVKQQTSPKSSQNHLFPG K S L V K Q 1 0 1 1 0 0 0 1 0 1 2 1 0 0 1 5 3 0 0 4 0 0 21 0 2074.1158 Q5VWN6 Q5VWN6 1586 1606 FAM208B Protein FAM208B yes yes 2 0.0021941 34.432 1 1.3698 1.7284 NaN 1 Median 1.3698 1.7284 NaN 1 0 Median NaN NaN NaN 0 0 Median 9052100 5416400 3635700 9052100 5416400 3635700 0 0 0 11050 1579 11347 39521 59316 59316 1 SLSEIHSPNIQDSSFDSVR KMVKNKPDFYTKAFRSLSEIHSPNIQDSSF IHSPNIQDSSFDSVREGLVPLSVSSGKNVI R S L V R E 0 1 1 2 0 1 1 0 1 2 1 0 0 1 1 6 0 0 0 1 0 0 19 0 2117.0025 Q562F6;B7Z7S9 Q562F6 1138 1156 SGOL2 Shugoshin-like 2 yes no 3 0.002434 17.824 1 0.57033 0.79304 NaN 1 Median NaN NaN NaN 0 0 Median 0.57033 0.79304 NaN 1 0 Median 9118600 5732300 3386300 0 0 0 9118600 5732300 3386300 11051 1546 11348 39522 59317;59318 59317 2 SLSEINKPNFYNNDFDDDFSHR SEDSDTRQTSHLQARSLSEINKPNFYNNDF PNFYNNDFDDDFSHRSSENILTVHEQANVE R S L H R S 0 1 4 4 0 0 1 0 1 1 1 1 0 3 1 3 0 0 1 0 0 0 22 1 2673.1732 Q5QJE6;J3KP30;B7Z854 Q5QJE6 251 272 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 3;4 2.7131E-09 110.33 4 1.0035 1.3152 20.085 4 Median 1.0035 1.3152 20.085 4 0 Median NaN NaN NaN 0 0 Median 73911000 37000000 36910000 73911000 37000000 36910000 0 0 0 11052 1561 11349 39523;39524;39525;39526 59319;59320;59321;59322;59323 59319 5 SLSPDCGGSIEVMQSFLK LLKESGPSGIETELRSLSPDCGGSIEVMQS PDCGGSIEVMQSFLKMIGMMLDRKRDFELA R S L L K M 0 0 0 1 1 1 1 2 0 1 2 1 1 1 1 4 0 0 0 1 0 0 18 0 1953.9176 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 805 822 WDR36 WD repeat-containing protein 36 yes no 2 0.00089745 82.663 1 0.90901 1.1542 NaN 1 Median 0.90901 1.1542 NaN 1 0 Median NaN NaN NaN 0 0 Median 1639600 744910 894710 1639600 744910 894710 0 0 0 11053 404 11350 39527 59324 59324 1 SLSPGGAALGYR VGGHRHPPGGGGGQRSLSPGGAALGYRDYR GQRSLSPGGAALGYRDYRLQQLALGRLPPP R S L Y R D 2 1 0 0 0 0 0 3 0 0 2 0 0 0 1 2 0 0 1 0 0 0 12 0 1147.5986 A0A087WWP4;Q96T37 A0A087WWP4 248 259 RBM15 Putative RNA-binding protein 15 yes no 2 0.012262 50.805 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3031100 3031100 0 3031100 3031100 0 0 0 0 11054 355 11351 39528 59325 59325 1 SLSTTNVFACSDRPTVIYSSNHK KVTLGTQPTVLRTFRSLSTTNVFACSDRPT ACSDRPTVIYSSNHKLVFSNVNLKEVNYMC R S L H K L 1 1 2 1 1 0 0 0 1 1 1 1 0 1 1 5 3 0 1 2 0 0 23 1 2583.2388 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 643 665 DDB1 DNA damage-binding protein 1 yes no 3;4 2.2368E-08 83.776 5 4 0.72406 0.95836 18.891 9 Median 0.83548 1.0844 16.883 5 0 Median 0.51758 0.90471 4.9683 4 0 Linear 179810000 106830000 72976000 92662000 49976000 42686000 87144000 56854000 30290000 11055 1520 11352 39529;39530;39531;39532;39533;39534;39535;39536;39537 59326;59327;59328;59329;59330;59331;59332;59333;59334;59335;59336;59337;59338;59339;59340;59341;59342;59343 59330 18 SLSVLSSSTIIANPDIPEAYK VLAIKGARVSDFGGRSLSVLSSSTIIANPD SSTIIANPDIPEAYKLRGWFDAEGQALDGV R S L Y K L 2 0 1 1 0 0 1 0 0 3 2 1 0 0 2 5 1 0 1 1 0 0 21 0 2204.1576 P27694;I3L4R8 P27694 390 410 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 2 2.3791E-25 141 3 0.62061 0.79058 8.6003 2 Median 0.62061 0.79058 8.6003 2 0 Median NaN NaN NaN 0 0 Median 10806000 5913100 4892600 10806000 5913100 4892600 0 0 0 11056 1302 11353 39538;39539;39540 59344;59345;59346;59347;59348;59349 59345 6 SLSVYHPQLAYCVVQFLEK KMFLIRVLLPLHKVKSLSVYHPQLAYCVVQ YHPQLAYCVVQFLEKESSLTEPVIVGLLKF K S L E K E 1 0 0 0 1 2 1 0 1 0 3 1 0 1 1 2 0 0 2 3 0 0 19 0 2280.1613 B4DSD7;E9PFR3;A8K6Y2;A0A024RD11;Q14738;Q86U13;Q96B13;Q96L51;Q96L52;Q7L7W2;H0YJ75;Q13362;H0YJU0 B4DSD7 292 310 PPP2R5D;PPP2R5C Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform;Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform yes no 3 0.0066471 69.081 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1825200 1825200 0 1825200 1825200 0 0 0 0 11057 307 11354 39541 59350 59350 1 SLTALSEPR PGRGASEGLPRMCTRSLTALSEPRTPGPPG PRMCTRSLTALSEPRTPGPPGLTTTPAPPD R S L P R T 1 1 0 0 0 0 1 0 0 0 2 0 0 0 1 2 1 0 0 0 0 0 9 0 972.52401 Q7Z5J4 Q7Z5J4 1059 1067 RAI1 Retinoic acid-induced protein 1 yes yes 2 0.025866 48.283 2 0.81136 1.1037 0.51746 2 Median NaN NaN NaN 0 0 Median 0.81136 1.1037 0.51746 2 0 Median 11416000 6201700 5213900 0 0 0 11416000 6201700 5213900 11058 1617 11355 39542;39543 59351;59352 59352 2 SLTDPSQESHTEAISDAETSSSDISFSGIATR LPTEKTTGARRSKAKSLTDPSQESHTEAIS ETSSSDISFSGIATRRTRSMQRKLKAQTEK K S L T R R 3 1 0 3 0 1 3 1 1 3 1 0 0 1 1 9 4 0 0 0 0 0 32 0 3325.507 Q5QJE6;J3KP30;B7Z854 Q5QJE6 170 201 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 3 9.0229E-29 111.05 4 2 0.83994 1.145 10.335 6 Median 0.85738 1.1777 3.4846 4 0 Median 0.59074 0.96562 0.25354 2 0 Median 341770000 201410000 140350000 148540000 80991000 67551000 193230000 120420000 72804000 11059 1561 11356 39544;39545;39546;39547;39548;39549 59353;59354;59355;59356;59357;59358;59359;59360;59361;59362;59363;59364;59365;59366;59367 59366 15 SLTELVQQPCPPIEASK SPAPESPMSSSESVKSLTELVQQPCPPIEA TELVQQPCPPIEASKDSKPPEPSDPPASDS K S L S K D 1 0 0 0 1 2 2 0 0 1 2 1 0 0 3 2 1 0 0 1 0 0 17 0 1895.9663 P39880 P39880 1069 1085 CUX1 Homeobox protein cut-like 1 yes yes 2 0.010156 113.99 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11060 1331 11357 39550;39551;39552 59368;59369;59370 59368 3 SLTEYLQNVEQK AACQLRISQHEAKIKSLTEYLQNVEQKKRQ KIKSLTEYLQNVEQKKRQLEESVDALSEEL K S L Q K K 0 0 1 0 0 2 2 0 0 0 2 1 0 0 0 1 1 0 1 1 0 0 12 0 1450.7304 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;M1V490;M1VPF9;M1V481;B4DS27 V9HW29 645 656 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5B-RET(NM_020630)_K22;R12;KIF5B-RET(NM_020975)_K22;R12;KIF5B-ALK_K17;A20 Kinesin-like protein;Kinesin-1 heavy chain yes no 2 0.00097218 79.974 2 0.60682 0.75481 NaN 1 Median 0.60682 0.75481 NaN 1 0 Median NaN NaN NaN 0 0 Median 10401000 7729700 2671700 10401000 7729700 2671700 0 0 0 11061 978 11358 39553;39554 59371;59372 59372 2 SLTFSPDSQLLVTASDDGYIK GKLLHTLEGHAMPIRSLTFSPDSQLLVTAS DSQLLVTASDDGYIKIYDVQHANLAGTLSG R S L I K I 1 0 0 3 0 1 0 1 0 1 3 1 0 1 1 4 2 0 1 1 0 0 21 0 2256.1162 Q9GZS3;H0YL19;H0YN81;H3BQA8;H0YLA1 Q9GZS3 195 215 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes no 2 2.201E-29 151.9 4 1 0.67072 0.83618 72.558 5 Median 0.66584 0.83054 7.1085 4 0 Median 2.7093 4.0803 NaN 1 0 Median 109560000 58973000 50583000 91873000 54621000 37252000 17683000 4351800 13331000 11062 1729 11359 39555;39556;39557;39558;39559 59373;59374;59375;59376;59377;59378;59379;59380;59381 59377 9 SLTGVVNAQALTSAFSPHTK GEEIAVQFVDMVKGKSLTGVVNAQALTSAF VNAQALTSAFSPHTKPWIGLAEALGTLMRA K S L T K P 3 0 1 0 0 1 0 1 1 0 2 1 0 1 1 3 3 0 0 2 0 0 20 0 2028.064 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2;Q8N5M8;Q9UMY3 O43175 311 330 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 3 0.00013269 48.824 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7928600 7928600 0 7928600 7928600 0 0 0 0 11063 1182 11360 39560 59382 59382 1 SLTLARPLK DEIPYLLDLHLFLGRSLTLARPLKEPSGVA HLFLGRSLTLARPLKEPSGVAGVDGMLGRV R S L L K E 1 1 0 0 0 0 0 0 0 0 3 1 0 0 1 1 1 0 0 0 0 0 9 1 997.62842 Q8TDD1 Q8TDD1 460 468 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 0.0067729 110.31 2 2 0.76205 1.0849 25.078 4 Median 0.99697 1.3135 3.3912 2 0 Median 0.5614 0.86024 9.1526 2 0 Median 39218000 21029000 18189000 24578000 11647000 12931000 14640000 9382100 5257900 11064 1658 11361 39561;39562;39563;39564 59383;59384;59385;59386;59387;59388 59384 6 SLTLSFVSER DKTEQSLASELEKLKSLTLSFVSERKYLNE LEKLKSLTLSFVSERKYLNEKEKENEKLIK K S L E R K 0 1 0 0 0 0 1 0 0 0 2 0 0 1 0 3 1 0 0 1 0 0 10 0 1137.603 A0A024RAC0;Q86V48;E5RFK8;Q05DE3 A0A024RAC0 188 197 LUZP1 Leucine zipper protein 1 yes no 2 0.0084022 64.711 1 0.88595 1.1802 NaN 1 Median 0.88595 1.1802 NaN 1 0 Median NaN NaN NaN 0 0 Median 7142700 3811600 3331100 7142700 3811600 3331100 0 0 0 11065 238 11362 39565 59389 59389 1 SLTNDWEDHLAVK NPDDITQEEYGEFYKSLTNDWEDHLAVKHF YKSLTNDWEDHLAVKHFSVEGQLEFRALLF K S L V K H 1 0 1 2 0 0 1 0 1 0 2 1 0 0 0 1 1 1 0 1 0 0 13 0 1526.7365 A0A024RD80;P08238;B4DMA2;B4DGL0;Q6PK50;K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q96HX7 A0A024RD80 307 319 HSP90AB1;EL52;HSP90AA1 Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha no no 3 0.038678 21.351 1 3.9038 5.8101 NaN 1 Median NaN NaN NaN 0 0 Median 3.9038 5.8101 NaN 1 0 Median 11369000 2422400 8946100 0 0 0 11369000 2422400 8946100 11066 312;1155 11363 39566 59390 59390 1 SLTQTFATVEVGR AVSVHSNLNSEAVMKSLTQTFATVEVGRWN MKSLTQTFATVEVGRWNNNKKSPIKASDLT K S L G R W 1 1 0 0 0 1 1 1 0 0 1 0 0 1 0 1 3 0 0 2 0 0 13 0 1407.7358 Q5QJE6;J3KP30;B7Z854 Q5QJE6 362 374 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2 2.7493E-27 218.11 4 2 0.89153 1.2222 8.1701 6 Median 0.92019 1.2499 6.1487 4 0 Median 0.69883 1.1211 0.91216 2 0 Median 288150000 149760000 138400000 199110000 98524000 100590000 89041000 51231000 37810000 11067 1561 11364 39567;39568;39569;39570;39571;39572 59391;59392;59393;59394;59395;59396;59397;59398;59399;59400;59401 59392 11 SLTSATSTSNIQSSASQPPRPQQGQVK AVSAPNTVSSTPGQKSLTSATSTSNIQSSA SSASQPPRPQQGQVKLTMAQLTQLTQGHGG K S L V K L 2 1 1 0 0 5 0 1 0 1 1 1 0 0 3 7 3 0 0 1 0 0 27 1 2784.4002 E7ETD6;Q12830;F5GXF5 E7ETD6 2107 2133 BPTF Nucleosome-remodeling factor subunit BPTF yes no 3 1.1831E-41 160.95 4 2 0.81847 1.211 27.85 6 Median 0.73099 0.96498 29.124 4 0 Median 0.91945 1.4841 1.0409 2 0 Median 70429000 37690000 32738000 38565000 22598000 15968000 31864000 15093000 16771000 11068 1015 11365 39573;39574;39575;39576;39577;39578 59402;59403;59404;59405;59406;59407;59408;59409;59410;59411;59412;59413;59414;59415;59416 59404 15 SLTVIPYK QLWYYGEHLFMLHGKSLTVIPYKCEVSSLA LFMLHGKSLTVIPYKCEVSSLAGALGKLKH K S L Y K C 0 0 0 0 0 0 0 0 0 1 1 1 0 0 1 1 1 0 1 1 0 0 8 0 919.53787 Q9H8H0 Q9H8H0 325 332 NOL11 Nucleolar protein 11 yes yes 2 0.030425 81.297 1 0.91451 1.1459 NaN 1 Median 0.91451 1.1459 NaN 1 0 Median NaN NaN NaN 0 0 Median 21771000 11660000 10111000 21771000 11660000 10111000 0 0 0 11069 1743 11366 39579 59417 59417 1 SLTYLSILR SLVELGDLDPLASLKSLTYLSILRNPVTNK PLASLKSLTYLSILRNPVTNKKHYRLYVIY K S L L R N 0 1 0 0 0 0 0 0 0 1 3 0 0 0 0 2 1 0 1 0 0 0 9 0 1064.623 Q53G61;Q53G21;P09661;H0YKK0;Q6NVW9;H0YMA0 Q53G61 114 122 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 2 0.0089275 90.37 4 1 0.8377 1.1558 9.1861 4 Median 0.84555 1.162 10.914 3 0 Median 0.82993 1.1497 NaN 1 0 Median 37595000 18862000 18733000 26409000 12974000 13435000 11186000 5887800 5298400 11070 1248 11367 39580;39581;39582;39583;39584 59418;59419;59420;59421;59422;59423;59424;59425 59422 8 SLVAFEGEGQFEK QFFGDAPERAWIFEKSLVAFEGEGQFEKLC EKSLVAFEGEGQFEKLCQESAKQAPTKAEK K S L E K L 1 0 0 0 0 1 3 2 0 0 1 1 0 2 0 1 0 0 0 1 0 0 13 0 1439.6933 O96028;Q05CW4;D6R9V2 O96028 280 292 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 2 0.00045027 100.72 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9703900 9703900 0 9703900 9703900 0 0 0 0 11071 1228 11368 39585 59426 59426 1 SLVALLVETQMK TKAKHLAAVEERKIKSLVALLVETQMKKLE KIKSLVALLVETQMKKLEIKLRHFEELETI K S L M K K 1 0 0 0 0 1 1 0 0 0 3 1 1 0 0 1 1 0 0 2 0 0 12 0 1330.753 Q58EY4;Q92922;B4DYQ1;B4DYF9;Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;B4DF22 Q58EY4 894 905 SMARCC1;SMARCC2 SWI/SNF complex subunit SMARCC1;SWI/SNF complex subunit SMARCC2 no no 2 1.0594E-05 91.855 2 1.1402 1.7286 1.1249 2 Median NaN NaN NaN 0 0 Median 1.1402 1.7286 1.1249 2 0 Median 28013000 13531000 14482000 0 0 0 28013000 13531000 14482000 11072 1549;257 11369 39586;39587 59427;59428;59429;59430 59428 107 4 SLVASLAEPDFVVTDFAK GIVSQVKVPKKISFKSLVASLAEPDFVVTD ASLAEPDFVVTDFAKFSRPAQLHIGFQALH K S L A K F 3 0 0 2 0 0 1 0 0 0 2 1 0 2 1 2 1 0 0 3 0 0 18 0 1907.988 A0A024R1A3;P22314 A0A024R1A3 305 322 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 9.8532E-07 125.03 1 0.59298 0.7691 NaN 1 Median 0.59298 0.7691 NaN 1 0 Median NaN NaN NaN 0 0 Median 7283500 4717600 2565900 7283500 4717600 2565900 0 0 0 11073 55 11370 39588 59431 59431 1 SLVEASSSGVSVLSLCEK TKYKMGGDIANRVLRSLVEASSSGVSVLSL EASSSGVSVLSLCEKGDAMIMEETGKIFKK R S L E K G 1 0 0 0 1 0 2 1 0 0 3 1 0 0 0 6 0 0 0 3 0 0 18 0 1850.9295 A8K6Y1;Q6PIN5;A0A024RB85;Q9UQ80;Q05D08;F8VR77;H0YIN7;F8W0A3 A8K6Y1 34 51 PA2G4 Proliferation-associated protein 2G4 yes no 2 2.646E-18 139.86 4 0.70191 0.8921 14.538 4 Median 0.70191 0.8921 14.538 4 0 Median NaN NaN NaN 0 0 Median 11882000 7320400 4561800 11882000 7320400 4561800 0 0 0 11074 264 11371 39589;39590;39591;39592 59432;59433;59434;59435 59433 4 SLVEIIEHGLVDEQQK QIAILMGCAILPHLRSLVEIIEHGLVDEQQ LVEIIEHGLVDEQQKVRTISALAIAALAEA R S L Q K V 0 0 0 1 0 2 3 1 1 2 2 1 0 0 0 1 0 0 0 2 0 0 16 0 1835.9629 O75533;Q7Z497 O75533 685 700 SF3B1 Splicing factor 3B subunit 1 yes no 2;3 1.7087E-22 167.73 5 0.51344 0.64997 63.695 4 Median 0.51344 0.64997 63.695 4 0 Median NaN NaN NaN 0 0 Median 39333000 26392000 12941000 39333000 26392000 12941000 0 0 0 11075 1204 11372 39593;39594;39595;39596;39597 59436;59437;59438;59439;59440;59441;59442;59443 59438 7 SLVFANSISCIK KDFYLYYFLMQYPGRSLVFANSISCIKRLS PGRSLVFANSISCIKRLSGLLKVLDIMPLT R S L I K R 1 0 1 0 1 0 0 0 0 2 1 1 0 1 0 3 0 0 0 1 0 0 12 0 1337.7013 B4DKV2;G3V529;Q9GZR7;F5GYL3;B4E300;B4DM03;A0A087WXU8;Q7Z4X3;Q7Z4W0;B4DGI6;Q59FS7 B4DKV2 497 508 DDX24 ATP-dependent RNA helicase DDX24 yes no 2 0.0062958 59.426 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11076 822 11373 39598 59444 59444 1 SLVGLGGTK GGGGGGFGGGGFGSRSLVGLGGTKSISISV GGFGSRSLVGLGGTKSISISVAGGGGGFGA R S L T K S 0 0 0 0 0 0 0 3 0 0 2 1 0 0 0 1 1 0 0 1 0 0 9 0 830.48617 CON__P35908;P35908 CON__P35908 62 70 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2 0.0157 96.948 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 11077 964 11374 39599 59445 59445 1 SLVGLQEELLFQYPDTR SALKNSHKALKALLRSLVGLQEELLFQYPD VGLQEELLFQYPDTRYLVDGTKPNAGSEEI R S L T R Y 0 1 0 1 0 2 2 1 0 0 4 0 0 1 1 1 1 0 1 1 0 0 17 0 2007.0313 Q9NY61 Q9NY61 288 304 AATF Protein AATF yes yes 2 2.9349E-169 318.7 4 2 0.7969 1.1136 7.9209 6 Median 0.81075 1.1136 4.3788 4 0 Median 0.73546 1.1833 13.78 2 0 Median 248910000 138580000 110330000 152390000 81361000 71034000 96515000 57218000 39297000 11078 1767 11375 39600;39601;39602;39603;39604;39605 59446;59447;59448;59449;59450;59451;59452;59453;59454;59455 59446 10 SLVHAGVPASYLLIPAASYVLPEVSK VVDSRPWLEGRHTLRSLVHAGVPASYLLIP LLIPAASYVLPEVSKVLLGAHALLANGSVM R S L S K V 4 0 0 0 0 0 1 1 1 1 4 1 0 0 3 4 0 0 2 4 0 0 26 0 2680.484 Q9Y3W7;Q71US4;A0A087WTA5;E7ERK9;Q9UI10 Q9Y3W7 246 271 DKFZp586J0119;EIF2B4 Translation initiation factor eIF-2B subunit delta yes no 3 3.5348E-06 83.992 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2342700 2342700 0 2342700 2342700 0 0 0 0 11079 332 11376 39606 59456 59456 1 SLVHDLFQK EKELQKLTQEETNFKSLVHDLFQKVEEAKS EETNFKSLVHDLFQKVEEAKSSLAMNRSRG K S L Q K V 0 0 0 1 0 1 0 0 1 0 2 1 0 1 0 1 0 0 0 1 0 0 9 0 1085.5869 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 574 582 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.8216E-06 134.48 4 2 0.70485 0.97933 3.9555 5 Median 0.75185 0.97933 5.041 3 0 Median 0.61581 0.97314 3.2524 2 0 Median 605730000 374450000 231280000 325150000 207750000 117400000 280580000 166700000 113880000 11080 1760 11377 39607;39608;39609;39610;39611;39612 59457;59458;59459;59460;59461;59462;59463;59464;59465;59466;59467 59465 11 SLVIPEK ______________________________ ______________________________ M S L E K F 0 0 0 0 0 0 1 0 0 1 1 1 0 0 1 1 0 0 0 1 0 0 7 0 784.46945 P62269;A0A0G2JQH2;Q5GGW2 P62269 2 8 RPS18 40S ribosomal protein S18 yes no 1 0.017249 55.441 1 0.82713 1.0392 NaN 1 Median 0.82713 1.0392 NaN 1 0 Median NaN NaN NaN 0 0 Median 74590000 39043000 35548000 74590000 39043000 35548000 0 0 0 11081 1402 11378 39613 59468 59468 0 SLVMHTPPVLK PNTPLKRGEAPTKRKSLVMHTPPVLKKIIK TKRKSLVMHTPPVLKKIIKEQPQPSGKQES K S L L K K 0 0 0 0 0 0 0 0 1 0 2 1 1 0 2 1 1 0 0 2 0 0 11 0 1220.6951 P46013;Q70L73 P46013 538 548 MKI67 Antigen KI-67 no no 2 6.932E-06 101.9 1 4 0.89912 1.3569 7.4477 2 Median NaN NaN NaN 0 0 Median 0.89912 1.3569 7.4477 2 0 Median 46666000 23682000 22984000 3973300 0 3973300 42692000 23682000 19011000 11082 1342;1604 11379;11380 39614;39615;39616;39617;39618 59469;59470;59471;59472;59473;59474;59475 59475 579 7 SLVNLGGSK GGGGSFGAGGGFGSRSLVNLGGSKSISISV GGFGSRSLVNLGGSKSISISVARGGGRGSG R S L S K S 0 0 1 0 0 0 0 2 0 0 2 1 0 0 0 2 0 0 0 1 0 0 9 0 873.49198 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRG2 H6VRG3 66 74 KRT1 Keratin, type II cytoskeletal 1 no no 1;2 7.4752E-05 114.39 4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 816050000 816050000 0 605930000 605930000 0 210110000 210110000 0 + 11083 1113;1114 11381 39619;39620;39621;39622;39623;39624 59476;59477;59478;59479;59480;59481 59478 6 SLVPAAELLESR EEQEQKGRLCFEGLRSLVPAAELLESRVID GLRSLVPAAELLESRVIDRELYQQLQRGER R S L S R V 2 1 0 0 0 0 2 0 0 0 3 0 0 0 1 2 0 0 0 1 0 0 12 0 1283.7085 Q15149;D3DWL0 Q15149 3116 3127 PLEC;PLEC1 Plectin yes no 2 2.6268E-07 110.84 4 2 0.73119 1.004 71.863 6 Median 0.68489 0.9261 8.0472 4 0 Median 2.5682 3.8359 7.1368 2 0 Median 190290000 98110000 92180000 158460000 89935000 68522000 31832000 8174500 23658000 11084 1507 11382 39625;39626;39627;39628;39629;39630 59482;59483;59484;59485;59486;59487;59488;59489;59490;59491;59492;59493 59487 12 SLVQEMVGSFGK INVDDFKIIYIAPMRSLVQEMVGSFGKRLA PMRSLVQEMVGSFGKRLATYGITVAELTGD R S L G K R 0 0 0 0 0 1 1 2 0 0 1 1 1 1 0 2 0 0 0 2 0 0 12 0 1280.6435 O75643;A4FU77;Q9H8B9;Q5ZF01 O75643 546 557 SNRNP200;ASCC3L1 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0018292 54.259 1 0.9722 1.3928 NaN 1 Median NaN NaN NaN 0 0 Median 0.9722 1.3928 NaN 1 0 Median 4833500 2530300 2303200 0 0 0 4833500 2530300 2303200 11085 1206 11383 39631 59494 59494 446 1 SLVSGLIR IYCSRSKADYTSHLRSLVSGLIRLFNDSSP DYTSHLRSLVSGLIRLFNDSSPVVLEESWD R S L I R L 0 1 0 0 0 0 0 1 0 1 2 0 0 0 0 2 0 0 0 1 0 0 8 0 843.5178 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2192 2199 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.0352 47.849 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4838800 4838800 0 4838800 4838800 0 0 0 0 11086 1000 11384 39632 59495 59495 1 SLVSVTK IDEYCVQQLKEFDGKSLVSVTKEGLELPED QLKEFDGKSLVSVTKEGLELPEDEEEKKKM K S L T K E 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 2 1 0 0 2 0 0 7 0 732.43815 A0A024RD80;P08238;B4DMA2;B4DGL0;Q58FF7;Q9H6X9;A8K3W9;Q58FF8 A0A024RD80 532 538 HSP90AB1;HSP90AB3P;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2 no no 2 0.017224 98.418 4 0.38807 0.49478 17.154 3 Median 0.38807 0.49478 17.154 3 0 Median NaN NaN NaN 0 0 Median 165230000 125090000 40137000 165230000 125090000 40137000 0 0 0 11087 312;598;1551 11385 39633;39634;39635;39636 59496;59497;59498;59499 59498 4 SLYASSPGGVYATR RTYSLGSALRPSTSRSLYASSPGGVYATRS RSLYASSPGGVYATRSSAVRLRSSVPGVRL R S L T R S 2 1 0 0 0 0 0 2 0 0 1 0 0 0 1 3 1 0 2 1 0 0 14 0 1427.7045 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;A0A1B0GUA0;A0A1B0GTT5;A0A1B0GVG8 V9HWE1 51 64 HEL113;VIM Vimentin yes no 2 1.597E-17 155.33 4 2 0.92065 1.2635 3.7252 5 Median 0.93621 1.2933 2.9305 4 0 Median 0.75869 1.215 NaN 1 0 Median 461060000 259030000 202030000 366400000 190350000 176050000 94664000 68683000 25980000 11088 1245 11386 39637;39638;39639;39640;39641;39642 59500;59501;59502;59503;59504;59505;59506;59507;59508;59509;59510;59511 59507 12 SLYDEVAAQGEVVR QNISSNSSASILESKSLYDEVAAQGEVVRK KSLYDEVAAQGEVVRKLKAEKSPKAKINEA K S L V R K 2 1 0 1 0 1 2 1 0 0 1 0 0 0 0 1 0 0 1 3 0 0 14 0 1534.7627 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 825 838 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 6.41E-07 137.01 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1647400 1647400 0 1647400 1647400 0 0 0 0 11089 1242 11387 39643 59512;59513 59513 2 SLYDEVAAQGEVVRK QNISSNSSASILESKSLYDEVAAQGEVVRK SLYDEVAAQGEVVRKLKAEKSPKAKINEAV K S L R K L 2 1 0 1 0 1 2 1 0 0 1 1 0 0 0 1 0 0 1 3 0 0 15 1 1662.8577 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 825 839 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2;3 3.8426E-05 107.17 3 3 0.91673 1.2318 87.984 5 Median 0.66377 0.87532 51.101 3 0 Median 2.2157 3.3694 18.25 2 0 Median 41564000 16697000 24867000 23286000 13262000 10024000 18278000 3435100 14842000 11090 1242 11388 39644;39645;39646;39647;39648;39649 59514;59515;59516;59517;59518;59519;59520;59521;59522 59515 9 SLYGLGGSK GGLGGACGGAGFGSRSLYGLGGSKRISIGG AGFGSRSLYGLGGSKRISIGGGSCAISGGY R S L S K R 0 0 0 0 0 0 0 3 0 0 2 1 0 0 0 2 0 0 1 0 0 0 9 0 880.46543 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;B4DRY0;A0A0S2Z427;CON__P04259;B4DKV4 B4DRR0 60 68 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 0.044614 46.39 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 11091 459;953 11389 39650 59523 59523 1 SLYGLGGSKR GGLGGACGGAGFGSRSLYGLGGSKRISIGG GFGSRSLYGLGGSKRISIGGGSCAISGGYG R S L K R I 0 1 0 0 0 0 0 3 0 0 2 1 0 0 0 2 0 0 1 0 0 0 10 1 1036.5665 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;B4DRY0;A0A0S2Z427;CON__P04259;B4DKV4 B4DRR0 60 69 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 0.012216 62.558 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9252700 9252700 0 0 0 0 9252700 9252700 0 + 11092 459;953 11390 39651;39652 59524;59525;59526 59526 3 SLYNLGGSK VSLAGACGVGGYGSRSLYNLGGSKRISIST GGYGSRSLYNLGGSKRISISTSGGSFRNRF R S L S K R 0 0 1 0 0 0 0 2 0 0 2 1 0 0 0 2 0 0 1 0 0 0 9 0 937.4869 CON__P13647;P13647;F8VV57 CON__P13647 64 72 KRT5 Keratin, type II cytoskeletal 5 no no 2 0.0067916 70.256 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15144000 15144000 0 15144000 15144000 0 0 0 0 + 11093 961 11391 39653;39654 59527;59528 59528 2 SLYQSAGVAPESFEYIEAHGTGTK GVTFPSGDIQEQLIRSLYQSAGVAPESFEY PESFEYIEAHGTGTKVGDPQELNGITRALC R S L T K V 3 0 0 0 0 1 3 3 1 1 1 1 0 1 1 3 2 0 2 1 0 0 24 0 2541.2023 A0A0U1RQF0;P49327 A0A0U1RQF0 275 298 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 6.5937E-14 88.836 3 2 0.74772 0.95723 7.864 3 Median 0.74772 0.95723 7.864 3 0 Median NaN NaN NaN 0 0 Median 71587000 24383000 47204000 44000000 24383000 19617000 27587000 0 27587000 11094 486 11392 39655;39656;39657;39658;39659 59529;59530;59531;59532;59533;59534;59535;59536 59531 8 SLYTDESSKPGK SSGNRDSKVPSEGKKSLYTDESSKPGKNKR GKKSLYTDESSKPGKNKRTAITTPNFKKLH K S L G K N 0 0 0 1 0 0 1 1 0 0 1 2 0 0 1 3 1 0 1 0 0 0 12 1 1310.6354 Q9BXS6;A8K4B4;H0YMD2 Q9BXS6 163 174 NUSAP1 Nucleolar and spindle-associated protein 1 yes no 2 0.0011979 77.192 2 0.3208 0.49825 2.5336 2 Median NaN NaN NaN 0 0 Median 0.3208 0.49825 2.5336 2 0 Median 16954000 12202000 4752900 0 0 0 16954000 12202000 4752900 11095 1723 11393 39660;39661 59537;59538;59539;59540 59540 4 SMEAEMIQLQEELAAAER EEILAQAKENEKKLKSMEAEMIQLQEELAA AEMIQLQEELAAAERAKRQAQQERDELADE K S M E R A 4 1 0 0 0 2 5 0 0 1 2 0 2 0 0 1 0 0 0 0 0 0 18 0 2047.9554 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1677 1694 MYH9;FLJ00279 Myosin-9 no no 2 1.0791E-12 89.507 1 1 1.545 2.2337 84.406 2 Median 0.90789 1.2298 NaN 1 0 Median 2.6292 4.0573 NaN 1 0 Median 29109000 9368800 19740000 5454800 2688600 2766200 23654000 6680200 16974000 11096 61;490 11394;11395 39662;39663 59541;59542 59541 29;30 2 SMEEQLLVVER APESYEELRSLLLGRSMEEQLLVVERIQKC LLGRSMEEQLLVVERIQKCNHPSLAEGNKA R S M E R I 0 1 0 0 0 1 3 0 0 0 2 0 1 0 0 1 0 0 0 2 0 0 11 0 1331.6755 A8KA74;P78316;E9PFK5;Q96GC8 A8KA74 443 453 NOP14 Nucleolar protein 14 yes no 2 9.8959E-06 97.734 2 0.85251 1.2318 0.0090329 2 Median NaN NaN NaN 0 0 Median 0.85251 1.2318 0.0090329 2 0 Median 26214000 14629000 11586000 0 0 0 26214000 14629000 11586000 11097 652 11396 39664;39665 59543;59544;59545;59546;59547 59544 230 5 SMLMEQDPDVAVTVR LSDPENNIKKLKELRSMLMEQDPDVAVTVR SMLMEQDPDVAVTVRKLVIVSLMELFKDIT R S M V R K 1 1 0 2 0 1 1 0 0 0 1 0 2 0 1 1 1 0 0 3 0 0 15 0 1689.8066 A8K905;Q8WTT2 A8K905 241 255 NOC3L Nucleolar complex protein 3 homolog yes no 2 0.00078477 47.915 2 0.60237 0.87444 NaN 1 Median NaN NaN NaN 0 0 Median 0.60237 0.87444 NaN 1 0 Median 15501000 11406000 4095300 0 0 0 15501000 11406000 4095300 11098 643 11397 39666;39667 59548;59549;59550 59549 219;220 3 SMPIRKDDEVQVVR SSPLSKELRQKYNVRSMPIRKDDEVQVVRG RSMPIRKDDEVQVVRGHYKGQQIGKVVQVY R S M V R G 0 2 0 2 0 1 1 0 0 1 0 1 1 0 1 1 0 0 0 3 0 0 14 2 1670.8774 Q9UNX3;E5RIT6;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;Q6IBH6;P61254;J3KTJ8;A0A024RBF6 Q9UNX3 46 59 RPL26L1;RPL26;hCG_26523 60S ribosomal protein L26-like 1;60S ribosomal protein L26 no no 3 0.00085015 65.495 2 0.78736 0.96199 6.7599 2 Median 0.78736 0.96199 6.7599 2 0 Median NaN NaN NaN 0 0 Median 33018000 17326000 15692000 33018000 17326000 15692000 0 0 0 11099 1797;1142 11398 39668;39669 59551;59552;59553;59554 59554 408 4 SMQDVVEDFK EALQVDGGRLEAELRSMQDVVEDFKNKYED EAELRSMQDVVEDFKNKYEDEINHRTAAEN R S M F K N 0 0 0 2 0 1 1 0 0 0 0 1 1 1 0 1 0 0 0 2 0 0 10 0 1196.5383 CON__Q3KNV1;P08729;B3KY79 CON__Q3KNV1 168 177 KRT7 Keratin, type II cytoskeletal 7 yes no 2 0.0054686 54.066 2 1.2041 1.7547 6.7904 2 Median NaN NaN NaN 0 0 Median 1.2041 1.7547 6.7904 2 0 Median 13498000 6310000 7187900 0 0 0 13498000 6310000 7187900 + 11100 968 11399 39670;39671 59555;59556 59556 347 2 SMQVVPLDK QEQMCNVGVSMGLTRSMQVVPLDKQITIID SMGLTRSMQVVPLDKQITIIDSPSFIVSPL R S M D K Q 0 0 0 1 0 1 0 0 0 0 1 1 1 0 1 1 0 0 0 2 0 0 9 0 1015.5372 A0A024R2Z6;Q9BVP2 A0A024R2Z6 279 287 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.0026819 73.985 3 0.45111 0.68333 6.9022 2 Median NaN NaN NaN 0 0 Median 0.45111 0.68333 6.9022 2 0 Median 28958000 20180000 8778100 0 0 0 28958000 20180000 8778100 11101 95 11400;11401 39672;39673;39674 59557;59558;59559;59560;59561 59557 57 5 SMVPVQVQLDVPVVK RDNNGVIGLLEPMKKSMVPVQVQLDVPVVK SMVPVQVQLDVPVVKVASGNDHLVMLTADG K S M V K V 0 0 0 1 0 2 0 0 0 0 1 1 1 0 2 1 0 0 0 6 0 0 15 0 1636.9222 Q5T081;A0A0S2Z3I4;A0A0S2Z404;P18754;C9JW69;C9JRH2;C9JMJ4;C9J3R0;C9JQZ4 Q5T081 162 176 RCC1 Regulator of chromosome condensation yes no 2 3.2883E-06 118.61 5 1 1.0137 1.2363 38.602 5 Median 1.0383 1.3171 17.224 4 0 Median 0.39199 0.61614 NaN 1 0 Median 83425000 60989000 22436000 13613000 6684500 6928300 69812000 54304000 15508000 11102 453 11402;11403 39675;39676;39677;39678;39679;39680 59562;59563;59564;59565;59566;59567;59568;59569;59570;59571;59572 59562 158 11 SMVTEEFNGSDWEK GFGIAPHCLDEGTVRSMVTEEFNGSDWEKA RSMVTEEFNGSDWEKAMKEHKTIKNMSKE_ R S M E K A 0 0 1 1 0 0 3 1 0 0 0 1 1 1 0 2 1 1 0 1 0 0 14 0 1657.693 Q7Z7K6 Q7Z7K6 248 261 CENPV Centromere protein V yes yes 2 0.0013071 47.429 1 0.39222 0.57912 NaN 1 Median NaN NaN NaN 0 0 Median 0.39222 0.57912 NaN 1 0 Median 7253500 5228700 2024900 0 0 0 7253500 5228700 2024900 11103 1619 11404 39681 59573 59573 726 1 SMYEEEINETR ENRCQSLTEDLEFRKSMYEEEINETRRKHE EFRKSMYEEEINETRRKHETRLVEVDSGRQ K S M T R R 0 1 1 0 0 0 4 0 0 1 0 0 1 0 0 1 1 0 1 0 0 0 11 0 1399.5926 P20700;E9PBF6;A0A0D9SFE5;Q6DC98 P20700 210 220 LMNB1 Lamin-B1 yes no 2 0.00085651 68.893 1 1.4363 1.9959 NaN 1 Median NaN NaN NaN 0 0 Median 1.4363 1.9959 NaN 1 0 Median 6140000 2586800 3553300 0 0 0 6140000 2586800 3553300 11104 1285 11405 39682 59574 59574 538 1 SNAHYNLQNAFNLAEQHLGLTK HKHRPDLIDFDKLKKSNAHYNLQNAFNLAE QNAFNLAEQHLGLTKLLDPEDISVDHPDEK K S N T K L 3 0 4 0 0 2 1 1 2 0 4 1 0 1 0 1 1 0 1 0 0 0 22 0 2482.2353 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;F8W6C1 B2ZZ89 228 249 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 1.4694E-09 111.25 3 0.85774 1.0816 6.5886 3 Plateau 0.85774 1.0816 6.5886 3 0 Plateau NaN NaN NaN 0 0 Median 77972000 36919000 41052000 77972000 36919000 41052000 0 0 0 11105 346 11406 39683;39684;39685 59575;59576;59577;59578 59575 4 SNAVQEADSELK TPHSWEEELNHYALKSNAVQEADSELKQFS ALKSNAVQEADSELKQFSKGETEQDLEADF K S N L K Q 2 0 1 1 0 1 2 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 12 0 1289.6099 Q5VZL5;H7C1I7 Q5VZL5 1116 1127 ZMYM4 Zinc finger MYM-type protein 4 yes no 2 0.0029964 59.84 1 2 1.2251 1.8226 1.048 2 Median NaN NaN NaN 0 0 Median 1.2251 1.8226 1.048 2 0 Median 19279000 6526000 12753000 4294900 0 4294900 14984000 6526000 8458000 11106 1580 11407 39686;39687;39688 59579;59580;59581;59582;59583 59579 5 SNDGAYSLVLAGGYEDDVDHGNFFTYTGSGGR ESGVHRPHVAGIHGRSNDGAYSLVLAGGYE VDHGNFFTYTGSGGRDLSGNKRTAEQSCDQ R S N G R D 2 1 2 4 0 0 1 7 1 0 2 0 0 2 0 3 2 0 3 2 0 0 32 0 3340.4545 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9;B4E0F9 A0A087WVR3 466 497 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 3 3.5951E-09 73.753 3 1.1576 1.5795 36.313 3 Plateau 1.1576 1.5795 36.313 3 0 Plateau NaN NaN NaN 0 0 Median 23081000 13524000 9556700 23081000 13524000 9556700 0 0 0 11107 337 11408 39689;39690;39691 59584;59585;59586;59587;59588;59589 59585 6 SNDPVATAFAEMLK ETNTHVKCFSLAATRSNDPVATAFAEMLKV RSNDPVATAFAEMLKVNKTLKSLNVESNFI R S N L K V 3 0 1 1 0 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 0 0 14 0 1492.7232 Q5HYL6;Q9NYL9;H0YKU1;H0YNJ8 Q5HYL6 239 252 DKFZp686E1899;TMOD3 Tropomodulin-3 yes no 2 0.012584 70.54 2 1.53 2.0098 NaN 1 Median 1.53 2.0098 NaN 1 0 Median NaN NaN NaN 0 0 Median 5942500 542770 5399700 5942500 542770 5399700 0 0 0 11108 1558 11409 39692;39693 59590;59591 59591 2 SNFSNSADDIK ENNKPREKSESNKRKSNFSNSADDIKSKKK NKRKSNFSNSADDIKSKKKREQSNDIARGF K S N I K S 1 0 2 2 0 0 0 0 0 1 0 1 0 1 0 3 0 0 0 0 0 0 11 0 1196.5309 V9HWG0;P45973;Q6I9T7 V9HWG0 92 102 HEL25;CBX5 Chromobox protein homolog 5 yes no 2 8.9982E-18 160.36 4 2 0.51288 0.67649 17.987 6 Median 0.52387 0.68676 1.8309 4 0 Median 0.30604 0.48396 0.80809 2 0 Median 904040000 621170000 282870000 664500000 432380000 232120000 239540000 188790000 50749000 11109 1341 11410 39694;39695;39696;39697;39698;39699 59592;59593;59594;59595;59596;59597;59598;59599;59600;59601;59602;59603;59604;59605;59606 59600 15 SNHLLEDSLK DKVETEQAEIQELKKSNHLLEDSLKELQLL QELKKSNHLLEDSLKELQLLSETLSLEKKE K S N L K E 0 0 1 1 0 0 1 0 1 0 3 1 0 0 0 2 0 0 0 0 0 0 10 0 1154.5932 P49454 P49454 933 942 CENPF Centromere protein F yes yes 2 0.0023583 71.221 2 1.2163 1.5118 NaN 1 Median 1.2163 1.5118 NaN 1 0 Median NaN NaN NaN 0 0 Median 11898000 7354000 4543500 11898000 7354000 4543500 0 0 0 11110 1351 11411 39700;39701 59607;59608 59607 2 SNIDALLSR SSELQAIKTELTQIKSNIDALLSRLEQIAA ELTQIKSNIDALLSRLEQIAAEQKANPDGK K S N S R L 1 1 1 1 0 0 0 0 0 1 2 0 0 0 0 2 0 0 0 0 0 0 9 0 987.53491 A8K4T9;Q53GL6;Q9UKM9;Q5QPL9;Q5QPM0 A8K4T9 183 191 RALY RNA-binding protein Raly yes no 2 2.3332E-05 122.33 3 2 0.87176 1.2091 7.63 5 Median 0.88006 1.1998 7.241 3 0 Median 0.84532 1.2807 0.5709 2 0 Median 152270000 86771000 65497000 116750000 67424000 49325000 35519000 19347000 16172000 11111 608 11412 39702;39703;39704;39705;39706 59609;59610;59611;59612;59613;59614;59615;59616 59613 8 SNIGTEGGPPPFVPFGQK IEKWELQRSLSKHNRSNIGTEGGPPPFVPF GTEGGPPPFVPFGQKCVSHVQVDSRELDRR R S N Q K C 0 0 1 0 0 1 1 4 0 1 0 1 0 2 4 1 1 0 0 1 0 0 18 0 1827.9155 A0A024QZE0;Q9H7E2;B1AMN9 A0A024QZE0 80 97 TDRD3 Tudor domain-containing protein 3 yes no 2 0.00026572 89.231 2 0.95222 1.204 38.326 2 Median 0.95222 1.204 38.326 2 0 Median NaN NaN NaN 0 0 Median 2781300 1013500 1767800 2781300 1013500 1767800 0 0 0 11112 11 11413 39707;39708 59617;59618 59618 2 SNILDSICFLLGISNLSQVR DPLFNAITGLNGSGKSNILDSICFLLGISN SICFLLGISNLSQVRASNLQDLVYKNGQAG K S N V R A 0 1 2 1 1 1 0 1 0 3 4 0 0 1 0 4 0 0 0 1 0 0 20 0 2248.1886 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q05D74;Q6P712 A0A024R158 39 58 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 9.7529E-06 93.495 1 0.75096 1.0196 NaN 1 Median 0.75096 1.0196 NaN 1 0 Median NaN NaN NaN 0 0 Median 7325000 4308300 3016700 7325000 4308300 3016700 0 0 0 11113 50 11414 39709 59619 59619 0 SNILLLGPTGSGK GEVLDSSHDDIKLEKSNILLLGPTGSGKTL EKSNILLLGPTGSGKTLLAQTLAKCLDVPF K S N G K T 0 0 1 0 0 0 0 3 0 1 3 1 0 0 1 2 1 0 0 0 0 0 13 0 1255.7136 Q9H072;A0A024R5X7;O76031 Q9H072 287 299 DKFZp586J151;CLPX ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial yes no 2 0.010544 57.019 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2678700 2678700 0 2678700 2678700 0 0 0 0 11114 152 11415 39710 59620 59620 1 SNILSNEMK QKEKIHEDTKEINEKSNILSNEMKAKNKDV KEINEKSNILSNEMKAKNKDVKDTEKKLNK K S N M K A 0 0 2 0 0 0 1 0 0 1 1 1 1 0 0 2 0 0 0 0 0 0 9 0 1034.5066 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83 Q9NTJ3 355 363 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.0092986 54.722 2 0.63648 0.99734 8.5355 2 Median NaN NaN NaN 0 0 Median 0.63648 0.99734 8.5355 2 0 Median 71747000 43051000 28696000 0 0 0 71747000 43051000 28696000 11115 1760 11416 39711;39712 59621;59622 59622 813 2 SNLGSVVLQLK YKTEMQDNTYPEILRSNLGSVVLQLKKLGI EILRSNLGSVVLQLKKLGIDDLVHFDFMDP R S N L K K 0 0 1 0 0 1 0 1 0 0 3 1 0 0 0 2 0 0 0 2 0 0 11 0 1156.6816 O43143;B4E0S6 O43143 505 515 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 0.00022411 113.66 4 1 0.66226 0.8255 20.001 5 Median 0.65066 0.81999 9.73 4 0 Median 0.81122 1.2254 NaN 1 0 Median 102130000 59824000 42303000 80054000 47567000 32486000 22074000 12257000 9816900 11116 1180 11417 39713;39714;39715;39716;39717 59623;59624;59625;59626;59627;59628 59627 6 SNLMVATGDLAIR LLFTMLEKSPLPIVRSNLMVATGDLAIRFP VRSNLMVATGDLAIRFPNLVDPWTPHLYAR R S N I R F 2 1 1 1 0 0 0 1 0 1 2 0 1 0 0 1 1 0 0 1 0 0 13 0 1359.718 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1073 1085 NCAPD2 Condensin complex subunit 1 yes no 2 2.5882E-13 132.03 3 3 0.45323 0.73209 13.457 3 Median 0.69542 0.91136 NaN 1 0 Median 0.44237 0.72266 1.8338 2 0 Median 198760000 140340000 58419000 13461000 11540000 1920900 185300000 128800000 56498000 11117 757 11418;11419 39718;39719;39720;39721;39722;39723 59629;59630;59631;59632;59633;59634;59635;59636;59637 59633 276 9 SNLVDNTNQVEVLQR KEDRAAQSLLNKLIRSNLVDNTNQVEVLQR SNLVDNTNQVEVLQRDPNSPLYSVKSFEEL R S N Q R D 0 1 3 1 0 2 1 0 0 0 2 0 0 0 0 1 1 0 0 3 0 0 15 0 1727.8802 I3L0H8;Q9HBZ9;F6QDS0;Q9NUU7;B4DS24;Q2NL95;Q7Z4W5;A0A0U4B4U6;H3BQK0;Q9UMR2;Q53G16;H3BTB3;H3BMQ5;H3BN59 I3L0H8 67 81 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 2 4.48E-50 218.94 4 2 0.37112 0.49373 153.37 6 Median 0.33853 0.45698 11.122 4 0 Median 6.1096 8.828 0.88879 2 0 Median 58207000 27865000 30341000 32375000 22757000 9618900 25831000 5108700 20722000 11118 1058 11420 39724;39725;39726;39727;39728;39729 59638;59639;59640;59641;59642;59643;59644;59645;59646;59647;59648 59639 11 SNLVDNTNQVEVLQRDPNSPLYSVK KEDRAAQSLLNKLIRSNLVDNTNQVEVLQR EVLQRDPNSPLYSVKSFEELRLPQNLIAQS R S N V K S 0 1 4 2 0 2 1 0 0 0 3 1 0 0 2 3 1 0 1 4 0 0 25 1 2828.4305 I3L0H8;Q9HBZ9;F6QDS0;Q9NUU7;B4DS24;Q2NL95;Q7Z4W5;A0A0U4B4U6;H3BQK0;Q9UMR2;Q53G16;H3BTB3;H3BMQ5;H3BN59 I3L0H8 67 91 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B yes no 3 2.3636E-05 71.428 3 0.35694 0.48298 41.304 3 Median 0.35694 0.48298 41.304 3 0 Median NaN NaN NaN 0 0 Median 21889000 14554000 7335300 21889000 14554000 7335300 0 0 0 11119 1058 11421 39730;39731;39732 59649;59650;59651;59652;59653 59650 5 SNLYIAESTSGR EAQDMAVRDHNVEFRSNLYIAESTSGRGQC EFRSNLYIAESTSGRGQCLKRIRYHGRGRF R S N G R G 1 1 1 0 0 0 1 1 0 1 1 0 0 0 0 3 1 0 1 0 0 0 12 0 1296.631 E7ESL0;J3KQY1;Q9NWU5 E7ESL0 138 149 MRPL22 39S ribosomal protein L22, mitochondrial yes no 2 0.0012135 79.659 3 1 0.98864 1.2882 100.39 2 Median 0.47879 0.63342 NaN 1 0 Median 2.0414 2.6198 NaN 1 0 Median 16795000 11287000 5507900 13335000 10085000 3249700 3460600 1202400 2258300 11120 1013 11422 39733;39734;39735;39736 59654;59655;59656;59657 59656 4 SNMDNMFESYINNLR LETKWSLLQQQKTARSNMDNMFESYINNLR SNMDNMFESYINNLRRQLETLGQEKLKLEA R S N L R R 0 1 4 1 0 0 1 0 0 1 1 0 2 1 0 2 0 0 1 0 0 0 15 0 1846.7978 CON__P05787;P05787;Q969I0;F8VUG2;CON__H-INV:HIT000292931;F8VP67;F8W1U3 CON__P05787 134 148 KRT8 Keratin, type II cytoskeletal 8 no no 2 0.00042071 52.928 1 1.7948 2.7831 NaN 1 Median NaN NaN NaN 0 0 Median 1.7948 2.7831 NaN 1 0 Median 28355000 9839400 18516000 0 0 0 28355000 9839400 18516000 + 11121 955;1068 11423 39737 59658 59658 331;332 1 SNMDNMFESYINNLRR LETKWSLLQQQKTARSNMDNMFESYINNLR NMDNMFESYINNLRRQLETLGQEKLKLEAE R S N R R Q 0 2 4 1 0 0 1 0 0 1 1 0 2 1 0 2 0 0 1 0 0 0 16 1 2002.8989 CON__P05787;P05787;Q969I0;F8VUG2;CON__H-INV:HIT000292931;F8VP67;F8W1U3 CON__P05787 134 149 KRT8 Keratin, type II cytoskeletal 8 no no 3 6.2855E-05 55.011 1 1.9726 3.0583 NaN 1 Median NaN NaN NaN 0 0 Median 1.9726 3.0583 NaN 1 0 Median 23351000 8829000 14522000 0 0 0 23351000 8829000 14522000 + 11122 955;1068 11424 39738 59659 59659 331;332 1 SNMFFGLTPLYGVR GSFKRRYPRRSARARSNMFFGLTPLYGVRS RSNMFFGLTPLYGVRSYGEEDIPFYSSSTG R S N V R S 0 1 1 0 0 0 0 2 0 0 2 0 1 2 1 1 1 0 1 1 0 0 14 0 1600.8072 Q03164 Q03164 2625 2638 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 0.00013032 66.262 1 0.882 1.2578 NaN 1 Median NaN NaN NaN 0 0 Median 0.882 1.2578 NaN 1 0 Median 10145000 5178300 4966200 0 0 0 10145000 5178300 4966200 11123 1438 11425 39739 59660 59660 646 1 SNNIINETTTR KDKEKVEEFKSIPAKSNNIINETTTRNNAL IPAKSNNIINETTTRNNALEKEKEKEEKKL K S N T R N 0 1 3 0 0 0 1 0 0 2 0 0 0 0 0 1 3 0 0 0 0 0 11 0 1261.6262 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5;Q6NSG3;Q58F29 Q9NTJ3 435 445 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 2.4527E-17 157.75 7 2 0.65673 0.96454 5.8051 5 Median 0.69887 0.95408 4.4343 3 0 Median 0.617 1.0149 3.9107 2 0 Median 459090000 269940000 189150000 143790000 73957000 69831000 315300000 195990000 119320000 11124 1760 11426 39740;39741;39742;39743;39744;39745;39746;39747;39748 59661;59662;59663;59664;59665;59666;59667;59668;59669;59670;59671;59672;59673;59674 59666 14 SNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADK GSVADDQKLMIWDTRSNNTSKPSHSVDAHT NPYSEFILATGSADKTVALWDLRNLKLKLH R S N D K T 4 0 4 2 1 0 2 1 2 1 2 2 0 2 2 7 3 0 1 2 0 0 38 1 4094.8916 Q09028;H0YF10;B4DRT0;H0YCT5;H0YDK2 Q09028 259 296 RBBP4 Histone-binding protein RBBP4 yes no 4 0.013892 14.95 1 0.79583 0.97859 NaN 1 Median 0.79583 0.97859 NaN 1 0 Median NaN NaN NaN 0 0 Median 8047600 4266000 3781600 8047600 4266000 3781600 0 0 0 11125 1452 11427 39749 59675 59675 1 SNPDQPAVILLLR GRISEAETLCTKNLKSNPDQPAVILLLRQV LKSNPDQPAVILLLRQVQCKPLLESQKPLP K S N L R Q 1 1 1 1 0 1 0 0 0 1 3 0 0 0 2 1 0 0 0 1 0 0 13 0 1434.8195 Q6PGP7 Q6PGP7 1355 1367 TTC37 Tetratricopeptide repeat protein 37 yes yes 2 0.029944 60.641 1 0.50401 0.69306 NaN 1 Median 0.50401 0.69306 NaN 1 0 Median NaN NaN NaN 0 0 Median 1176800 890500 286260 1176800 890500 286260 0 0 0 11126 1594 11428 39750 59676 59676 1 SNPGGFGIAPHCLDEGTVR TFCKRCGVQSFYTPRSNPGGFGIAPHCLDE GFGIAPHCLDEGTVRSMVTEEFNGSDWEKA R S N V R S 1 1 1 1 1 0 1 4 1 1 1 0 0 1 2 1 1 0 0 1 0 0 19 0 1982.9269 Q7Z7K6 Q7Z7K6 229 247 CENPV Centromere protein V yes yes 2;3 1.3627E-24 154.81 8 4 1.0064 1.3669 16.423 11 Median 1.1126 1.533 7.0828 7 0 Median 0.69495 1.0833 4.5373 4 0 Median 878880000 448860000 430020000 620630000 297570000 323060000 258250000 151290000 106960000 11127 1619 11429 39751;39752;39753;39754;39755;39756;39757;39758;39759;39760;39761;39762 59677;59678;59679;59680;59681;59682;59683;59684;59685;59686;59687;59688;59689;59690;59691;59692;59693;59694;59695;59696;59697;59698;59699;59700 59684 24 SNPSAVAGNETPGASTK NKEESYDFSKSYEYKSNPSAVAGNETPGAS PSAVAGNETPGASTKGYPPPVAAKPTFGRS K S N T K G 3 0 2 0 0 0 1 2 0 0 0 1 0 0 2 3 2 0 0 1 0 0 17 0 1586.7536 B7Z954;A0A024R233;A0A1B0GTW1;Q9UDY2 B7Z954 935 951 TJP2 Tight junction protein ZO-2 yes no 2 3.7929E-05 112.02 5 0.89075 1.1281 11.725 2 Median 0.89075 1.1281 11.725 2 0 Median NaN NaN NaN 0 0 Median 5456600 2317200 3139400 5456600 2317200 3139400 0 0 0 11128 78 11430 39763;39764;39765;39766;39767 59701;59702;59703;59704;59705;59706 59703 6 SNPSVFVIFQK YTSPPPQFDSCVDTRSNPSVFVIFQKDQVY VDTRSNPSVFVIFQKDQVYPQYVIEYTEDK R S N Q K D 0 0 1 0 0 1 0 0 0 1 0 1 0 2 1 2 0 0 0 2 0 0 11 0 1264.6816 Q7Z2W4;A8K9U6;C9J6P4 Q7Z2W4 872 882 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 0.00058058 80.455 3 0.78512 0.99726 38.714 3 Plateau 0.78512 0.99726 38.714 3 0 Plateau NaN NaN NaN 0 0 Median 23605000 13484000 10122000 23605000 13484000 10122000 0 0 0 11129 1613 11431 39768;39769;39770 59707;59708;59709;59710 59710 4 SNQISQCESEDLGITEK VTPCILKLHGTQCEKSNQISQCESEDLGIT QISQCESEDLGITEKENVFVGPTHPVGQDN K S N E K E 0 0 1 1 1 2 3 1 0 2 1 1 0 0 0 3 1 0 0 0 0 0 17 0 1936.8684 Q5VWN6 Q5VWN6 1435 1451 FAM208B Protein FAM208B yes yes 2 1.0917E-06 139.77 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11130 1579 11432 39771 59711 59711 1 SNRDELELELAENRK QFQMRRLKKQLADERSNRDELELELAENRK SNRDELELELAENRKLLTEKDAQIAMMQQR R S N R K L 1 2 2 1 0 0 4 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 15 2 1814.9123 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 228 242 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 3.8622E-06 136.57 4 0.64321 0.80176 18.163 4 Median 0.64321 0.80176 18.163 4 0 Median NaN NaN NaN 0 0 Median 166130000 90607000 75523000 166130000 90607000 75523000 0 0 0 11131 148;1499;590 11433 39772;39773;39774;39775 59712;59713;59714;59715;59716;59717 59715 6 SNSEVEDVGPTSHNR NKISDTKKKQGMKKRSNSEVEDVGPTSHNR SNSEVEDVGPTSHNRKKARWDTLEPLDTGL R S N N R K 0 1 2 1 0 0 2 1 1 0 0 0 0 0 1 3 1 0 0 2 0 0 15 0 1626.7234 Q13206;B4DKX3 Q13206 829 843 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 2 0.046747 27.059 1 0.62012 0.78265 NaN 1 Median NaN NaN NaN 0 0 Median 0.62012 0.78265 NaN 1 0 Median 1860900 1137700 723210 0 0 0 1860900 1137700 723210 11132 1466 11434 39776 59718 59718 1 SNSNAVSAIPINK PDQTVIKKGPVSLSKSNSNAVSAIPINKDN SKSNSNAVSAIPINKDNLFGGVVNPNEVFC K S N N K D 2 0 3 0 0 0 0 0 0 2 0 1 0 0 1 3 0 0 0 1 0 0 13 0 1313.6939 Q96SH1;P05549;C9JXZ2;H7C5E5;C1K3N0 Q96SH1 187 199 TFAP2A Transcription factor AP-2-alpha yes no 2 0.0062556 52.247 1 1 0.68762 0.92494 28.468 2 Median 0.60842 0.7563 NaN 1 0 Median 0.77713 1.1312 NaN 1 0 Median 13639000 7296500 6342100 8259200 4415600 3843600 5379500 2880900 2498500 11133 1238 11435 39777;39778 59719;59720;59721;59722 59720 4 SNSQVPQQSHFTK LSGLTLSPEQGTNEKSNSQVPQQSHFTKTT EKSNSQVPQQSHFTKTTTGPPHLVPPQPLP K S N T K T 0 0 1 0 0 3 0 0 1 0 0 1 0 1 1 3 1 0 0 1 0 0 13 0 1486.7165 A0A024R0F1;Q9UNY4 A0A024R0F1 469 481 TTF2 Transcription termination factor 2 yes no 2;3 5.6187E-20 188.27 4 2 0.82718 1.0474 7.9602 4 Median 0.82718 1.0474 7.9602 4 0 Median NaN NaN NaN 0 0 Median 42565000 20031000 22534000 35869000 20031000 15838000 6696200 0 6696200 11134 33 11436 39779;39780;39781;39782;39783;39784 59723;59724;59725;59726;59727;59728;59729 59724 7 SNTLPISLQSIR EAANGNLDFVLSFLKSNTLPISLQSIRSSL FLKSNTLPISLQSIRSSLLLGFRRSMNINL K S N I R S 0 1 1 0 0 1 0 0 0 2 2 0 0 0 1 3 1 0 0 0 0 0 12 0 1327.746 E5KNY5;P42704;B4DSR0 E5KNY5 530 541 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.00023723 125.23 4 0.30869 0.41088 6.1539 2 Median 0.30869 0.41088 6.1539 2 0 Median NaN NaN NaN 0 0 Median 44311000 36689000 7621800 44311000 36689000 7621800 0 0 0 11135 1001 11437 39785;39786;39787;39788 59730;59731;59732;59733;59734 59732 5 SNTSLPPLPFK GDVVSTRDPVKSQSKSNTSLPPLPFKRGGG SQSKSNTSLPPLPFKRGGGKDGSVTGTKRL K S N F K R 0 0 1 0 0 0 0 0 0 0 2 1 0 1 3 2 1 0 0 0 0 0 11 0 1199.655 P46013 P46013 2987 2997 MKI67 Antigen KI-67 yes yes 2 4.3361E-07 139.98 3 1 1.1251 1.6366 3.2593 2 Median 1.2111 1.5993 NaN 1 0 Median 1.0453 1.6747 NaN 1 0 Median 574590000 291300000 283290000 409290000 208690000 200600000 165290000 82612000 82682000 11136 1342 11438 39789;39790;39791;39792 59735;59736;59737;59738;59739 59735 5 SNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADK GSVADDQKLMIWDTRSNTTSKPSHLVDAHT NPYSEFILATGSADKTVALWDLRNLKLKLH R S N D K T 4 0 3 2 1 0 2 1 2 1 3 2 0 2 2 6 4 0 1 2 0 0 38 1 4107.9484 Q6FHQ0;Q16576;E9PC52;A8K6A2;Q5JP01;Q5JP02 Q6FHQ0 258 295 RBBP7 Histone-binding protein RBBP7 yes no 4 0.021699 29.061 1 0.46562 0.58028 NaN 1 Median 0.46562 0.58028 NaN 1 0 Median NaN NaN NaN 0 0 Median 3694100 1859200 1834900 3694100 1859200 1834900 0 0 0 11137 1521 11439 39793 59740;59741 59741 2 SNVESALSHGLK NCELSDHCIKLQKRKSNVESALSHGLKSLN KRKSNVESALSHGLKSLNRKSPSHSSSSED K S N L K S 1 0 1 0 0 0 1 1 1 0 2 1 0 0 0 3 0 0 0 1 0 0 12 0 1240.6412 F5H101;A0A024R250;Q76FK4;F8WE42;B4DM91;Q6AI50;A6H8Z4 F5H101 432 443 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 2 0.046071 31.843 1 0.9032 1.1476 NaN 1 Median 0.9032 1.1476 NaN 1 0 Median NaN NaN NaN 0 0 Median 12765000 7235000 5529900 12765000 7235000 5529900 0 0 0 11138 80 11440 39794 59742 59742 1 SNVIDSMLFVFGYR HKRFSCIIGPNGSGKSNVIDSMLFVFGYRA KSNVIDSMLFVFGYRAQKIRSKKLSVLIHN K S N Y R A 0 1 1 1 0 0 0 1 0 1 1 0 1 2 0 2 0 0 1 2 0 0 14 0 1646.8127 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83;C9J9E4;C9JWF0;C9IYK2;C9JJ64 Q9NTJ3 120 133 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.00021879 62.408 2 0.59237 0.93193 2.5191 2 Median NaN NaN NaN 0 0 Median 0.59237 0.93193 2.5191 2 0 Median 63443000 38215000 25228000 0 0 0 63443000 38215000 25228000 11139 1760 11441 39795;39796 59743;59744 59744 814 2 SNVLTGLQDSSTDNR KPKPLVVQVPTFARRSNVLTGLQDSSTDNR SNVLTGLQDSSTDNRAKLDLGAQGKGQGHQ R S N N R A 0 1 2 2 0 1 0 1 0 0 2 0 0 0 0 3 2 0 0 1 0 0 15 0 1605.7594 A0A0S2Z4Q9;A0A0S2Z5B2;O00257 A0A0S2Z4Q9 90 104 CBX4 E3 SUMO-protein ligase CBX4 yes no 2 0.0014296 46.592 1 0.51052 0.68933 NaN 1 Median 0.51052 0.68933 NaN 1 0 Median NaN NaN NaN 0 0 Median 2243300 1086500 1156800 2243300 1086500 1156800 0 0 0 11140 467 11442 39797 59745 59745 1 SNVSSPATPTASSSSSTTPTRK DISLDNLVEGKRKRRSNVSSPATPTASSSS TPTASSSSSTTPTRKITESPRASMGVLSGK R S N R K I 2 1 1 0 0 0 0 0 0 0 0 1 0 0 3 8 5 0 0 1 0 0 22 1 2150.0451 A6NNK5;Q12888;B7Z3E7;B3KVT9;H7BZY0 A6NNK5 1586 1607 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 3 0.010846 20.256 1 2.2117 3.0383 NaN 1 Median NaN NaN NaN 0 0 Median 2.2117 3.0383 NaN 1 0 Median 1546000 587780 958260 0 0 0 1546000 587780 958260 11141 572 11443 39798 59746 59746 1 SNVVIQEEELELAVLEAGSSEAVKPK SLSDPENEQTVQKRKSNVVIQEEELELAVL LAVLEAGSSEAVKPKCTLEERQQFMKAFRQ K S N P K C 3 0 1 0 0 1 6 1 0 1 3 2 0 0 1 3 0 0 0 4 0 0 26 1 2767.4491 Q96QE3;H0UIC2;A0A075B754 Q96QE3 369 394 ATAD5 ATPase family AAA domain-containing protein 5 yes no 3 2.0224E-17 125.39 3 1.4002 1.7429 10.726 3 Median 1.4002 1.7429 10.726 3 0 Median NaN NaN NaN 0 0 Median 32347000 15096000 17250000 32347000 15096000 17250000 0 0 0 11142 1698 11444 39799;39800;39801 59747;59748;59749;59750 59747 4 SNYFLK ______________________________ PREDRATWKSNYFLKIIQLLDDYPKCFIVG K S N L K I 0 0 1 0 0 0 0 0 0 0 1 1 0 1 0 1 0 0 1 0 0 0 6 0 770.39629 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VWS0;Q53HK9;F8VW21;F8VU65;F8VZS0;Q6NSF2;B4E3D5;G3V210;Q8NHW5;F8VQY6;F8VRK7;F8VS58;F8VYN4 Q53HW2 11 16 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 0.045316 74.517 1 0.77219 0.96477 NaN 1 Median 0.77219 0.96477 NaN 1 0 Median NaN NaN NaN 0 0 Median 38313000 20252000 18061000 38313000 20252000 18061000 0 0 0 11143 281 11445 39802 59751 59751 1 SNYNLPMHK LDELYGTWRKAASLKSNYNLPMHKMINTDL KAASLKSNYNLPMHKMINTDLSRILKSPEI K S N H K M 0 0 2 0 0 0 0 0 1 0 1 1 1 0 1 1 0 0 1 0 0 0 9 0 1102.523 P36578;Q59GY2;H3BM89;B4DMJ6;B4DMJ2 P36578 275 283 RPL4 60S ribosomal protein L4 yes no 2 6.6217E-05 127.02 5 2 0.73935 0.92725 4.6098 7 Median 0.73967 0.92725 4.3896 5 0 Median 0.60397 0.96495 6.7288 2 0 Median 243510000 144580000 98929000 154120000 88025000 66099000 89386000 56556000 32830000 11144 1325 11446;11447 39803;39804;39805;39806;39807;39808;39809 59752;59753;59754;59755;59756;59757;59758;59759;59760;59761;59762 59752 553 11 SPAESCDLLGDIQTCIR AFQHLLLLVGIHLLKSPAESCDLLGDIQTC AESCDLLGDIQTCIRKSLGEKPRRSRTKTI K S P I R K 1 1 0 2 2 1 1 1 0 2 2 0 0 0 1 2 1 0 0 0 0 0 17 0 1933.8874 Q9BQG0;I3L1L3 Q9BQG0 609 625 MYBBP1A Myb-binding protein 1A yes no 2 4.508E-85 254.4 4 0.62833 0.85731 4.6539 4 Median 0.62833 0.85731 4.6539 4 0 Median NaN NaN NaN 0 0 Median 36925000 22453000 14472000 36925000 22453000 14472000 0 0 0 11145 1708 11448 39810;39811;39812;39813 59763;59764;59765;59766;59767;59768;59769;59770 59764 8 SPAESCDLLGDIQTCIRK AFQHLLLLVGIHLLKSPAESCDLLGDIQTC ESCDLLGDIQTCIRKSLGEKPRRSRTKTID K S P R K S 1 1 0 2 2 1 1 1 0 2 2 1 0 0 1 2 1 0 0 0 0 0 18 1 2061.9823 Q9BQG0;I3L1L3 Q9BQG0 609 626 MYBBP1A Myb-binding protein 1A yes no 3 0.00029644 89.502 2 0.46829 0.60434 NaN 1 Median 0.46829 0.60434 NaN 1 0 Median NaN NaN NaN 0 0 Median 8288600 5576900 2711600 8288600 5576900 2711600 0 0 0 11146 1708 11449 39814;39815 59771;59772 59772 2 SPAFALK VGVPEKKVLPITVPKSPAFALKNRIRMPTK VLPITVPKSPAFALKNRIRMPTKEDEEEDE K S P L K N 2 0 0 0 0 0 0 0 0 0 1 1 0 1 1 1 0 0 0 0 0 0 7 0 732.41703 Q643R0;Q9ULW0;B3KM90 Q643R0 486 492 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 0.029096 64.776 2 0.77833 0.96635 0.96072 2 Median 0.77833 0.96635 0.96072 2 0 Median NaN NaN NaN 0 0 Median 78076000 45928000 32148000 78076000 45928000 32148000 0 0 0 11147 1581 11450 39816;39817 59773;59774 59773 2 SPAGLQVLNDYLADK ______________________________ SPAGLQVLNDYLADKSYIEGYVPSQADVAV K S P D K S 2 0 1 2 0 1 0 1 0 0 3 1 0 0 1 1 0 0 1 1 0 0 15 0 1602.8253 A0A024R3W7;P24534;F2Z2G2;C9JZW3;F8WF65 A0A024R3W7 8 22 EEF1B2 Elongation factor 1-beta yes no 2 4.9575E-21 168.76 3 0.32892 0.41461 6.7569 2 Median 0.32892 0.41461 6.7569 2 0 Median NaN NaN NaN 0 0 Median 28077000 20275000 7802600 28077000 20275000 7802600 0 0 0 11148 109 11451 39818;39819;39820 59775;59776;59777 59776 3 SPAGPAATPAQAQAASTPR TQVIKPPLIFVDPNRSPAGPAATPAQAQAA PAATPAQAQAASTPRKARASESTARSSSSE R S P P R K 7 1 0 0 0 2 0 1 0 0 0 0 0 0 4 2 2 0 0 0 0 0 19 0 1748.8806 E7ETY2;B4DRA2;J3KQ96;Q13428;Q59FZ2 E7ETY2 1004 1022 TCOF1 Treacle protein no no 2 0.0027965 36.519 1 0.63492 0.88346 NaN 1 Median NaN NaN NaN 0 0 Median 0.63492 0.88346 NaN 1 0 Median 6176800 3588800 2588000 0 0 0 6176800 3588800 2588000 11149 1016;1135;1469 11452 39821 59778 59778 1 SPAHLSLIR VFTQAIQWYQNHQPKSPAHLSLIREAANFK QNHQPKSPAHLSLIREAANFKLKYGRKKEA K S P I R E 1 1 0 0 0 0 0 0 1 1 2 0 0 0 1 2 0 0 0 0 0 0 9 0 992.57671 V9HWK0;O76094;Q86X80;A0PJJ5;Q71V07;D6RDY6 V9HWK0 443 451 HEL103;SRP72 Signal recognition particle subunit SRP72 yes no 3 0.0068267 82.645 3 0.61912 0.83863 NaN 1 Median 0.61912 0.83863 NaN 1 0 Median NaN NaN NaN 0 0 Median 12807000 9274100 3532900 12807000 9274100 3532900 0 0 0 11150 1211 11453 39822;39823;39824 59779;59780;59781 59781 3 SPASDTYIVFGEAK SKNILFVITKPDVYKSPASDTYIVFGEAKI KSPASDTYIVFGEAKIEDLSQQAQLAAAEK K S P A K I 2 0 0 1 0 0 1 1 0 1 0 1 0 1 1 2 1 0 1 1 0 0 14 0 1483.7195 F8W1N5;F8VZJ2;F8VNW4;F8W0W4;H0YHX9;A0A024RB41;Q13765;E9PAV3;B4DDI8 F8W1N5 35 48 NACA;hCG_2016482 Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form yes no 2 0.00064987 92.247 2 2 1.7863 2.579 12.241 2 Median NaN NaN NaN 0 0 Median 1.7863 2.579 12.241 2 0 Median 15395000 5060600 10335000 3357600 0 3357600 12038000 5060600 6977000 11151 260 11454 39825;39826;39827;39828 59782;59783;59784;59785 59783 4 SPASIEVVKPMEAASAILSQADAR FIVSPLNSSSALALRSPASIEVVKPMEAAS PMEAASAILSQADARQVVLKYTVPGYRNSL R S P A R Q 6 1 0 1 0 1 2 0 0 2 1 1 1 0 2 4 0 0 0 2 0 0 24 1 2440.2632 A0A024R2Z6;Q9BVP2 A0A024R2Z6 312 335 GNL3 Guanine nucleotide-binding protein-like 3 yes no 3 6.0008E-79 166.59 4 3 0.66426 0.9163 10.053 7 Median 0.71539 0.9331 12.114 4 0 Median 0.51362 0.89964 5.994 3 0 Median 168240000 106300000 61944000 26113000 14776000 11337000 142130000 91520000 50607000 11152 95 11455;11456 39829;39830;39831;39832;39833;39834;39835 59786;59787;59788;59789;59790;59791;59792;59793 59792 58 8 SPAVATSTAAPPPPSSPLPSK FTPSSTMMEVFLQEKSPAVATSTAAPPPPS STAAPPPPSSPLPSKSTSAPQMSPGSSDNQ K S P S K S 4 0 0 0 0 0 0 0 0 0 1 1 0 0 7 5 2 0 0 1 0 0 21 0 1959.0313 B4DZJ6;B4DYY5;F8W726;Q14157 B4DZJ6 353 373 UBAP2L Ubiquitin-associated protein 2-like yes no 2 0.0022384 76.341 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 644470 644470 0 644470 644470 0 0 0 0 11153 874 11457 39836 59794 59794 1 SPAVKPAAAPK GTTKNSSNKPAVTTKSPAVKPAAAPKQPVG VTTKSPAVKPAAAPKQPVGGGQKLLTRKAD K S P P K Q 4 0 0 0 0 0 0 0 0 0 0 2 0 0 3 1 0 0 0 1 0 0 11 1 1035.6077 B2RAU8;A0A0A0MRM9;Q14978;Q96J17 B2RAU8 397 407 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 2 0.00082209 84.213 2 0.45855 0.64715 17.388 2 Median NaN NaN NaN 0 0 Median 0.45855 0.64715 17.388 2 0 Median 5142900 3381800 1761200 0 0 0 5142900 3381800 1761200 11154 388 11458 39837;39838 59795;59796 59795 2 SPDLAPTPAPQSTPR HEAKKAAKQEARSDKSPDLAPTPAPQSTPR SPDLAPTPAPQSTPRNTVSQSISGDPEIDK K S P P R N 2 1 0 1 0 1 0 0 0 0 1 0 0 0 5 2 2 0 0 0 0 0 15 0 1533.7787 F8WAE5;Q9BY44 F8WAE5 501 515 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 2 0.0061326 39.266 1 1 0.98528 1.2894 NaN 1 Median NaN NaN NaN 0 0 Median 0.98528 1.2894 NaN 1 0 Median 6200600 4984100 1216500 2975400 2975400 0 3225200 2008700 1216500 11155 1072 11459 39839;39840 59797;59798 59798 2 SPDVGLYGVIPECGETYHSDLAEAK AVESGDVGKTLSALRSPDVGLYGVIPECGE PECGETYHSDLAEAKKKKLAVGDNNSKWVK R S P A K K 2 0 0 2 1 0 3 3 1 1 2 1 0 0 2 2 1 0 2 2 0 0 25 0 2706.2483 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;Q6P1N4;H0YLE8;B4E2M0 A4QPB0 648 672 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 3 9.5646E-11 108.96 4 0.51249 0.64705 35.137 2 Median 0.51249 0.64705 35.137 2 0 Median NaN NaN NaN 0 0 Median 17705000 14901000 2804800 17705000 14901000 2804800 0 0 0 11156 287 11460 39841;39842;39843;39844 59799;59800;59801;59802;59803 59799 5 SPEDHIGAVLER TDIVLKGVVQVEKIKSPEDHIGAVLERAKP KIKSPEDHIGAVLERAKPEYISKTYKIDSW K S P E R A 1 1 0 1 0 0 2 1 1 1 1 0 0 0 1 1 0 0 0 1 0 0 12 0 1321.6626 Q5T0F3;Q13823 Q5T0F3 389 400 GNL2 Nucleolar GTP-binding protein 2 yes no 3 0.0012197 53.136 3 0.80791 1.0724 15.041 3 Plateau 0.80791 1.0724 15.041 3 0 Plateau NaN NaN NaN 0 0 Median 55856000 32565000 23291000 55856000 32565000 23291000 0 0 0 11157 1477 11461 39845;39846;39847 59804;59805;59806 59805 3 SPEEHLEEMMK LSGSPLKVKNSKNSKSPEEHLEEMMKMMSP KNSKSPEEHLEEMMKMMSPNKLHTNFHIPK K S P M K M 0 0 0 0 0 0 4 0 1 0 1 1 2 0 1 1 0 0 0 0 0 0 11 0 1358.5846 Q9UIG0 Q9UIG0 361 371 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.0017172 60.899 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2696100 0 2696100 0 0 0 2696100 0 2696100 11158 1786 11462 39848 59807 59807 827;828 1 SPEQQLSATQK GGVITSDMIEMIFSKSPEQQLSATQKFRKL IFSKSPEQQLSATQKFRKLLSKEPNPPIDE K S P Q K F 1 0 0 0 0 3 1 0 0 0 1 1 0 0 1 2 1 0 0 0 0 0 11 0 1215.6095 Q5BKZ2;P52294;C9J352;C9JWD9;F2Z3G4;C9J4U1;C9JYI4 Q5BKZ2 95 105 KPNA1 Importin subunit alpha;Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed yes no 2 0.01471 43.77 1 0.46003 0.58672 NaN 1 Median 0.46003 0.58672 NaN 1 0 Median NaN NaN NaN 0 0 Median 1165000 697390 467600 1165000 697390 467600 0 0 0 11159 1364 11463 39849 59808 59808 1 SPEVLLGSAR PIRVYTHEAITLWYRSPEVLLGSARYSTPV TLWYRSPEVLLGSARYSTPVDIWSIGTIFA R S P A R Y 1 1 0 0 0 0 1 1 0 0 2 0 0 0 1 2 0 0 0 1 0 0 10 0 1027.5662 A0A024QZP7;P06493;Q5H9N4;A0A087WZZ9;I6L9I5;E5RIU6;A0A024QZJ8 A0A024QZP7 171 180 CDC2;CDK1;DKFZp686L20222 Cyclin-dependent kinase 1 yes no 2 3.6127E-09 128.6 4 4 0.64583 0.79257 7.2738 4 Linear 0.64583 0.79257 7.2738 4 0 Linear NaN NaN NaN 0 0 Median 134370000 90296000 44072000 114480000 70409000 44072000 19887000 19887000 0 11160 18 11464 39850;39851;39852;39853;39854;39855;39856;39857 59809;59810;59811;59812;59813;59814;59815;59816;59817;59818;59819;59820;59821 59819 13 SPFAAAVGQEK KKKREAPLTGKKKRKSPFAAAVGQEKPVFE KKRKSPFAAAVGQEKPVFEPGDKTFEEYLD K S P E K P 3 0 0 0 0 1 1 1 0 0 0 1 0 1 1 1 0 0 0 1 0 0 11 0 1103.5611 Q8N9T8;A0A024R7C4;B4DUT2;B4DUY9;B7ZLF4 Q8N9T8 480 490 KRI1;FLJ12949 Protein KRI1 homolog yes no 2 0.00022043 83.869 2 0.58005 0.86707 0.35228 2 Median NaN NaN NaN 0 0 Median 0.58005 0.86707 0.35228 2 0 Median 18253000 11492000 6761700 0 0 0 18253000 11492000 6761700 11161 1645 11465 39858;39859 59822;59823;59824;59825 59822 4 SPFEHSVEHK GPRSPLDQRSPYGSRSPFEHSVEHKSTPEH PYGSRSPFEHSVEHKSTPEHTWSSRKT___ R S P H K S 0 0 0 0 0 0 2 0 2 0 0 1 0 1 1 2 0 0 0 1 0 0 10 0 1195.5622 O14646;B3KT33 O14646 1689 1698 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes no 2;3 1.9711E-18 199.89 2 0.68075 0.87405 8.9942 2 Median 0.68075 0.87405 8.9942 2 0 Median NaN NaN NaN 0 0 Median 6032700 3591800 2440900 6032700 3591800 2440900 0 0 0 11162 1169 11466 39860;39861 59826;59827;59828 59828 3 SPFEVYVDK THKVTVLFAGQHIAKSPFEVYVDKSQGDAS GQHIAKSPFEVYVDKSQGDASKVTAQGPGL K S P D K S 0 0 0 1 0 0 1 0 0 0 0 1 0 1 1 1 0 0 1 2 0 0 9 0 1082.5284 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98 P21333 368 376 FLNA Filamin-A yes no 2 0.0012505 101.9 4 0.87981 1.0921 9.4637 4 Median 0.87981 1.0921 9.4637 4 0 Median NaN NaN NaN 0 0 Median 119330000 64405000 54930000 119330000 64405000 54930000 0 0 0 11163 1287 11467 39862;39863;39864;39865 59829;59830;59831;59832;59833;59834 59831 6 SPFLCFGDVLLGASR EASSPPVLSLSHFCRSPFLCFGDVLLGASR SPFLCFGDVLLGASRTLSLALDNPNEEVAE R S P S R T 1 1 0 1 1 0 0 2 0 0 3 0 0 2 1 2 0 0 0 1 0 0 15 0 1637.8236 Q8IZT6;B3KWI2;Q4G1H2;Q4G1H0;A0A087WV76 Q8IZT6 47 61 ASPM Abnormal spindle-like microcephaly-associated protein yes no 2 1.9544E-22 119.69 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4072000 4072000 0 4072000 4072000 0 0 0 0 11164 1631 11468 39866;39867;39868;39869 59835;59836;59837;59838 59838 4 SPFNSPSPQDSPR EGGISSPVKKTEMDKSPFNSPSPQDSPRLS DKSPFNSPSPQDSPRLSSFTQHHRPVIAVH K S P P R L 0 1 1 1 0 1 0 0 0 0 0 0 0 1 4 4 0 0 0 0 0 0 13 0 1414.6477 Q6FI30;B7Z4T6;P08651 Q6FI30 324 336 NFIC Nuclear factor 1;Nuclear factor 1 C-type yes no 2 2.3029E-08 121.02 3 1 0.81306 1.1117 9.4196 4 Median 0.80132 1.0637 5.1944 3 0 Median 0.99382 1.2948 NaN 1 0 Median 17273000 8781100 8491500 13199000 6731000 6468300 4073200 2050100 2023200 11165 909 11469 39870;39871;39872;39873 59839;59840;59841;59842;59843;59844 59843 6 SPFPDVVPLQPEVSSYR VYCSKEQSQSAHLWKSPFPDVVPLQPEVSS FPDVVPLQPEVSSYRRGRKKRVPYTKVQLK K S P Y R R 0 1 0 1 0 1 1 0 0 0 1 0 0 1 4 3 0 0 1 3 0 0 17 0 1915.968 P31276 P31276 242 258 HOXC13 Homeobox protein Hox-C13 yes yes 2 0.0023648 47.991 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2860500 2860500 0 2860500 2860500 0 0 0 0 11166 1308 11470 39874 59845 59845 1 SPFSVAVSPSLDLSK PVGVNVTYGGDPIPKSPFSVAVSPSLDLSK SPFSVAVSPSLDLSKIKVSGLGEKVDVGKD K S P S K I 1 0 0 1 0 0 0 0 0 0 2 1 0 1 2 5 0 0 0 2 0 0 15 0 1532.8086 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 959 973 FLNA Filamin-A yes no 2 1.6006E-46 186.58 4 1 0.88642 1.1045 63.139 5 Median 0.85757 1.081 9.8524 4 0 Median 2.7931 4.2489 NaN 1 0 Median 194610000 97160000 97455000 175030000 91626000 83400000 19588000 5533500 14055000 11167 1287 11471 39875;39876;39877;39878;39879 59846;59847;59848;59849;59850;59851;59852;59853;59854;59855;59856 59855 11 SPFTVGVAAPLDLSK NMQVLVTYGGDPIPKSPFTVGVAAPLDLSK SPFTVGVAAPLDLSKIKLNGLENRVEVGKD K S P S K I 2 0 0 1 0 0 0 1 0 0 2 1 0 1 2 2 1 0 0 2 0 0 15 0 1500.8188 O75369;A0A024R321;Q68CT4;E7EN95 O75369 932 946 FLNB;DKFZp686A1668 Filamin-B yes no 2 4.9246E-21 168.83 4 0.77002 0.97521 7.1312 4 Median 0.77002 0.97521 7.1312 4 0 Median NaN NaN NaN 0 0 Median 32071000 16975000 15096000 32071000 16975000 15096000 0 0 0 11168 1199 11472 39880;39881;39882;39883 59857;59858;59859;59860;59861;59862 59857 6 SPFVVQVGEACNPNACR PHVVKIFFAGDTIPKSPFVVQVGEACNPNA FVVQVGEACNPNACRASGRGLQPKGVRIRE K S P C R A 2 1 2 0 2 1 1 1 0 0 0 0 0 1 2 1 0 0 0 3 0 0 17 0 1903.8669 O75369;A0A024R321;Q68CT4;E7EN95 O75369 440 456 FLNB;DKFZp686A1668 Filamin-B yes no 2 1.929E-50 206.74 4 0.8243 1.1339 16.551 4 Median 0.8243 1.1339 16.551 4 0 Median NaN NaN NaN 0 0 Median 20557000 11962000 8595200 20557000 11962000 8595200 0 0 0 11169 1199 11473 39884;39885;39886;39887 59863;59864;59865;59866;59867 59864 5 SPGLYFLTAGDQGTLR AVLLPEEPVSQLGVKSPGLYFLTAGDQGTL PGLYFLTAGDQGTLRVWEAASGQCVYTQAQ K S P L R V 1 1 0 1 0 1 0 3 0 0 3 0 0 1 1 1 2 0 1 0 0 0 16 0 1694.8628 Q12788;J3KNP2;A0JLS5 Q12788 257 272 TBL3 Transducin beta-like protein 3 no no 2 1.8606E-33 178.15 5 2 0.68292 1.0704 10.201 6 Median 0.74874 1.015 12.473 4 0 Median 0.66794 1.0704 4.3975 2 0 Median 222360000 125250000 97106000 137050000 73531000 63518000 85308000 51719000 33589000 11170 1456 11474 39888;39889;39890;39891;39892;39893;39894 59868;59869;59870;59871;59872;59873;59874;59875;59876;59877;59878;59879 59872 12 SPHIETYLK VVVQVLDARDPMGTRSPHIETYLKKEKPWK DPMGTRSPHIETYLKKEKPWKHLIFVLNKC R S P L K K 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 1 0 0 0 9 0 1086.571 Q5T0F3;Q13823;B4DPI9;H0YG10 Q5T0F3 234 242 GNL2 Nucleolar GTP-binding protein 2 yes no 2 0.0059584 96.034 3 1 0.72681 0.91108 13.409 3 Median 0.76494 0.96284 7.8147 2 0 Median 0.51233 0.7792 NaN 1 0 Median 40752000 27449000 13303000 29068000 19755000 9313100 11684000 7693300 3990300 11171 1477 11475 39895;39896;39897;39898 59880;59881;59882;59883 59882 4 SPIAPEELALVHNLR INALWGRTTLKREDKSPIAPEELALVHNLR SPIAPEELALVHNLRKMMKNDWHGGAIVSA K S P L R K 2 1 1 0 0 0 2 0 1 1 3 0 0 0 2 1 0 0 0 1 0 0 15 0 1657.9152 P51398;V9GZ61;V9GYW1;V9GYA7;V9GZ03;V9GYL9;V9GYC9;V9GYJ9 P51398 280 294 DAP3 28S ribosomal protein S29, mitochondrial yes no 3 0.047316 26.771 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5190700 0 5190700 0 0 0 5190700 0 5190700 11172 1361 11476 39899 59884 59884 1 SPILVATAVAAR QRDREEALHQFRSGKSPILVATAVAARGLD SGKSPILVATAVAARGLDISNVKHVINFDL K S P A R G 4 1 0 0 0 0 0 0 0 1 1 0 0 0 1 1 1 0 0 2 0 0 12 0 1167.6976 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1;A0A024R9A4;O15523;B4E132;A0A0J9YVQ7 A0A0D9SFB3 492 503 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 1.7472E-05 131.12 4 2 0.49504 0.66208 92.993 6 Median 0.47968 0.63973 5.7965 4 0 Median 2.6073 3.8253 2.7252 2 0 Median 112420000 65848000 46570000 83451000 57978000 25472000 28967000 7869400 21098000 11173 432 11477 39900;39901;39902;39903;39904;39905 59885;59886;59887;59888;59889;59890;59891;59892;59893 59892 8 SPISVPGGSALISNLGK TTVVGGVTKTITLVKSPISVPGGSALISNL ISVPGGSALISNLGKVMSVVQTKPVQTSAV K S P G K V 1 0 1 0 0 0 0 3 0 2 2 1 0 0 2 4 0 0 0 1 0 0 17 0 1595.8883 A6NEM2;P51610 A6NEM2 666 682 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 0.0095789 29.807 1 0.96844 1.2339 NaN 1 Median 0.96844 1.2339 NaN 1 0 Median NaN NaN NaN 0 0 Median 5425600 2952200 2473300 5425600 2952200 2473300 0 0 0 11174 564 11478 39906 59894 59894 1 SPLAMSHASGVK FGHLEFLSGEKKNKKSPLAMSHASGVKTSP NKKSPLAMSHASGVKTSPDPRQGEEETRVG K S P V K T 2 0 0 0 0 0 0 1 1 0 1 1 1 0 1 3 0 0 0 1 0 0 12 0 1183.6019 Q1ED39 Q1ED39 119 130 KNOP1 Lysine-rich nucleolar protein 1 yes yes 2 0.0008803 61.213 1 0.85922 1.1502 NaN 1 Median NaN NaN NaN 0 0 Median 0.85922 1.1502 NaN 1 0 Median 1374800 761660 613180 0 0 0 1374800 761660 613180 11175 1525 11479 39907 59895 59895 704 1 SPLAQDSPSQGSPALYR IRFIARQQNIKNARKSPLAQDSPSQGSPAL LAQDSPSQGSPALYRNVNTLRERISAFQSA K S P Y R N 2 1 0 1 0 2 0 1 0 0 2 0 0 0 3 4 0 0 1 0 0 0 17 0 1772.8693 E9PEI0;Q69YH5;A8K8Z0;B7Z5Q5 E9PEI0 105 121 CDCA2 Cell division cycle-associated protein 2 yes no 2 1.6493E-25 174.47 2 1 0.77671 1.0783 21.324 2 Median 0.77671 1.0783 21.324 2 0 Median NaN NaN NaN 0 0 Median 25788000 20034000 5753700 14438000 8684300 5753700 11350000 11350000 0 11176 1023 11480 39908;39909;39910 59896;59897;59898 59896 3 SPLFGQYFVLENPGTIK SYRQCDPSERKLYGKSPLFGQYFVLENPGT LFGQYFVLENPGTIKVGDPVYLLGQ_____ K S P I K V 0 0 1 0 0 1 1 2 0 1 2 1 0 2 2 1 1 0 1 1 0 0 17 0 1908.9986 H7BYZ9;Q5VT66 H7BYZ9 237 253 MARC1 Mitochondrial amidoxime-reducing component 1 yes no 2 0.00020243 96.059 1 0.79769 0.99532 NaN 1 Median 0.79769 0.99532 NaN 1 0 Median NaN NaN NaN 0 0 Median 4140400 2686400 1454000 4140400 2686400 1454000 0 0 0 11177 1118 11481 39911 59899 59899 1 SPLFSVQR LSELEAAPYLPQEEKSPLFSVQREGLPEDG YLPQEEKSPLFSVQREGLPEDGTLYRINRF K S P Q R E 0 1 0 0 0 1 0 0 0 0 1 0 0 1 1 2 0 0 0 1 0 0 8 0 932.50797 Q8WUA4;Q53QN0;A0A087WZD8 Q8WUA4 355 362 GTF3C2 General transcription factor 3C polypeptide 2 yes no 2 0.027696 52.786 1 0.58929 0.78379 NaN 1 Median 0.58929 0.78379 NaN 1 0 Median NaN NaN NaN 0 0 Median 17079000 10656000 6422400 17079000 10656000 6422400 0 0 0 11178 1663 11482 39912 59900 59900 1 SPLLPAVLEGLAK IVFVTYFRILKKAQRSPLLPAVLEGLAKFA QRSPLLPAVLEGLAKFAHLINVEFFDDLLV R S P A K F 2 0 0 0 0 0 1 1 0 0 4 1 0 0 2 1 0 0 0 1 0 0 13 0 1306.786 A8K905;Q8WTT2;B4DXL4 A8K905 512 524 NOC3L Nucleolar complex protein 3 homolog yes no 2 3.6276E-08 126.71 4 0.83905 1.0742 10.61 4 Median 0.83905 1.0742 10.61 4 0 Median NaN NaN NaN 0 0 Median 40636000 21746000 18890000 40636000 21746000 18890000 0 0 0 11179 643 11483 39913;39914;39915;39916 59901;59902;59903;59904;59905;59906;59907 59905 7 SPLPIVR FCDSQLRLLFTMLEKSPLPIVRSNLMVATG LLFTMLEKSPLPIVRSNLMVATGDLAIRFP K S P V R S 0 1 0 0 0 0 0 0 0 1 1 0 0 0 2 1 0 0 0 1 0 0 7 0 780.48577 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1066 1072 NCAPD2 Condensin complex subunit 1 yes no 2 0.0045539 149.06 4 2 0.69241 0.95697 14.45 6 Median 0.71506 0.98551 3.7817 4 0 Median 0.46134 0.74887 1.1877 2 0 Median 376320000 231200000 145120000 247350000 142980000 104370000 128970000 88223000 40746000 11180 757 11484 39917;39918;39919;39920;39921;39922 59908;59909;59910;59911;59912;59913;59914;59915;59916;59917 59908 10 SPLQSVVVR AVSELSPRERSPALKSPLQSVVVRRRSPRP RSPALKSPLQSVVVRRRSPRPSPVPKPSPP K S P V R R 0 1 0 0 0 1 0 0 0 0 1 0 0 0 1 2 0 0 0 3 0 0 9 0 983.57638 Q9Y2W1;Q7Z5U1;Q05D20;Q6P0P7;Q6PJV4 Q9Y2W1 253 261 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 2 0.0024316 82.426 2 0.6439 0.90444 5.3869 2 Median NaN NaN NaN 0 0 Median 0.6439 0.90444 5.3869 2 0 Median 20622000 12287000 8334400 0 0 0 20622000 12287000 8334400 11181 1809 11485 39923;39924 59918;59919 59918 2 SPLSALAR KQHQKALPKKGVLGKSPLSALARKKARLSL KKGVLGKSPLSALARKKARLSLVIRSPSLL K S P A R K 2 1 0 0 0 0 0 0 0 0 2 0 0 0 1 2 0 0 0 0 0 0 8 0 813.47085 Q9BQG0;I3L1L3;B4DE42;I3L2H8 Q9BQG0 1290 1297 MYBBP1A Myb-binding protein 1A yes no 2 6.1929E-07 147.69 2 1 0.58362 0.81195 2.2706 2 Median 0.5962 0.79901 NaN 1 0 Median 0.57131 0.82509 NaN 1 0 Median 36521000 25063000 11458000 24926000 17652000 7273600 11595000 7410900 4183900 11182 1708 11486 39925;39926;39927 59920;59921;59922;59923 59920 4 SPLYLVSR RPSQCSEFIQQSSMKSPLYLVSRSLPSSSQ IQQSSMKSPLYLVSRSLPSSSQLKGSPQAI K S P S R S 0 1 0 0 0 0 0 0 0 0 2 0 0 0 1 2 0 0 1 1 0 0 8 0 933.52837 Q8WYP5;B3KVE5;B3KTD2 Q8WYP5 1142 1149 AHCTF1 Protein ELYS yes no 2 0.019836 72.23 2 2 0.42561 0.62524 35.858 3 Median 0.82694 1.1363 NaN 1 0 Median 0.4242 0.61134 3.1795 2 0 Median 29272000 22138000 7133200 15424000 12172000 3251200 13848000 9966000 3882000 11183 1670 11487 39928;39929;39930;39931 59924;59925;59926;59927;59928 59928 5 SPNQNVQQAAAGALR VYQLGGICKLVDLLRSPNQNVQQAAAGALR SPNQNVQQAAAGALRNLVFRSTTNKLETRR R S P L R N 4 1 2 0 0 3 0 1 0 0 1 0 0 0 1 1 0 0 0 1 0 0 15 0 1523.7805 A0A024R952;Q13835 A0A024R952 298 312 PKP1 Plakophilin-1 yes no 2 0.00041 106.16 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2557200 2557200 0 0 0 0 2557200 2557200 0 11184 213 11488 39932;39933;39934 59929;59930;59931 59929 3 SPPPELTDTATSTK EESMTIDKNTKIPCKSPPPELTDTATSTKR KSPPPELTDTATSTKRCPKTRPRKEVKEEL K S P T K R 1 0 0 1 0 0 1 0 0 0 1 1 0 0 3 2 4 0 0 0 0 0 14 0 1443.7093 P46013 P46013 2588 2601 MKI67 Antigen KI-67 yes yes 2 4.127E-14 157.03 4 2 0.87705 1.1446 6.2353 6 Median 0.89399 1.1217 2.8194 4 0 Median 0.81683 1.2511 2.3037 2 0 Median 164970000 91692000 73282000 117500000 64521000 52980000 47474000 27172000 20302000 11185 1342 11489 39935;39936;39937;39938;39939;39940 59932;59933;59934;59935;59936;59937;59938;59939;59940;59941;59942;59943;59944;59945;59946;59947;59948;59949 59937 18 SPPPESMDTPTSTR EESTTDDKTTKIACKSPPPESMDTPTSTRR KSPPPESMDTPTSTRRRPKTPLGKRDIVEE K S P T R R 0 1 0 1 0 0 1 0 0 0 0 0 1 0 4 3 3 0 0 0 0 0 14 0 1501.6719 P46013 P46013 2105 2118 MKI67 Antigen KI-67 yes yes 2 0.0070609 54.471 1 0.79143 1.1431 NaN 1 Median NaN NaN NaN 0 0 Median 0.79143 1.1431 NaN 1 0 Median 11606000 6544900 5060700 0 0 0 11606000 6544900 5060700 11186 1342 11490 39941 59950 59950 580 0 SPPPESVDTPTSTK EESMTDEKTTKIACKSPPPESVDTPTSTKQ KSPPPESVDTPTSTKQWPKRSLRKADVEEE K S P T K Q 0 0 0 1 0 0 1 0 0 0 0 1 0 0 4 3 3 0 0 1 0 0 14 0 1441.6937 P46013 P46013 1131 1144 MKI67 Antigen KI-67 yes yes 2 3.0628E-40 208.17 5 4 1.0306 1.3017 14.963 6 Linear 0.98612 1.2442 9.5888 4 0 Median 0.62662 0.93834 4.0654 2 0 Median 144350000 71042000 73307000 122780000 59078000 63701000 21570000 11964000 9605800 11187 1342 11491 39942;39943;39944;39945;39946;39947;39948;39949;39950 59951;59952;59953;59954;59955;59956;59957;59958;59959;59960;59961;59962;59963;59964;59965;59966 59953 16 SPQCSNPGLCVQPHHIGVSVK KGIPLESTDGERLVKSPQCSNPGLCVQPHH PGLCVQPHHIGVSVKELDLYLAYFVHAADS K S P V K E 0 0 1 0 2 2 0 2 2 1 1 1 0 0 3 3 0 0 0 3 0 0 21 0 2300.1154 S4R3K4;B1AKN6;B1AKN7;B1AKN5;B4DRN9;B1AKN8;Q12857;S4R308 S4R3K4 106 126 NFIA Nuclear factor 1;Nuclear factor 1 A-type yes no 4 0.049441 12.538 1 0.4217 0.5626 NaN 1 Median NaN NaN NaN 0 0 Median 0.4217 0.5626 NaN 1 0 Median 3498700 2568800 929920 0 0 0 3498700 2568800 929920 11188 674 11492 39951 59967 59967 1 SPQENLVPCDVLLLR ASDEIVPGDIVSIGRSPQENLVPCDVLLLR SPQENLVPCDVLLLRGRCIVDEAMLTGESV R S P L R G 0 1 1 1 1 1 1 0 0 0 4 0 0 0 2 1 0 0 0 2 0 0 15 0 1751.924 A0A024R7N2;Q9HD20;A0A024R7P3 A0A024R7N2 328 342 ATP13A1 Manganese-transporting ATPase 13A1 yes no 2 0.039721 73.881 1 1.0667 1.4166 NaN 1 Median 1.0667 1.4166 NaN 1 0 Median NaN NaN NaN 0 0 Median 1161600 619020 542570 1161600 619020 542570 0 0 0 11189 181 11493 39952 59968 59968 1 SPQPDPVDTPASTK DKPTTDEKTTKIACKSPQPDPVDTPASTKQ KSPQPDPVDTPASTKQRPKRNLRKADVEEE K S P T K Q 1 0 0 2 0 1 0 0 0 0 0 1 0 0 4 2 2 0 0 1 0 0 14 0 1438.694 P46013 P46013 2344 2357 MKI67 Antigen KI-67 yes yes 2 1.9646E-20 168.98 4 2 0.9463 1.3254 6.6375 6 Median 0.97523 1.2785 4.1055 4 0 Median 0.90574 1.4292 2.5789 2 0 Median 874100000 446850000 427250000 448580000 223380000 225200000 425520000 223470000 202050000 11190 1342 11494 39953;39954;39955;39956;39957;39958 59969;59970;59971;59972;59973;59974;59975;59976;59977;59978;59979;59980;59981 59970 13 SPQPDPVGTPTIFK DKPTTHEKTTKIACRSPQPDPVGTPTIFKP RSPQPDPVGTPTIFKPQSKRSLRKADVEEE R S P F K P 0 0 0 1 0 1 0 1 0 1 0 1 0 1 4 1 2 0 0 1 0 0 14 0 1482.7718 P46013 P46013 2223 2236 MKI67 Antigen KI-67 yes yes 2 0.018684 32.616 2 0.66804 1.0142 5.6937 2 Median NaN NaN NaN 0 0 Median 0.66804 1.0142 5.6937 2 0 Median 35446000 19794000 15652000 0 0 0 35446000 19794000 15652000 11191 1342 11495 39959;39960 59982;59983 59983 2 SPQPDPVGTPTIFKPQSK DKPTTHEKTTKIACRSPQPDPVGTPTIFKP PDPVGTPTIFKPQSKRSLRKADVEEESLAL R S P S K R 0 0 0 1 0 2 0 1 0 1 0 2 0 1 5 2 2 0 0 1 0 0 18 1 1923.0102 P46013 P46013 2223 2240 MKI67 Antigen KI-67 yes yes 2;3 7.4376E-46 174.87 6 2 0.92918 1.2167 19.889 8 Median 0.99135 1.2059 22.761 6 0 Median 0.76823 1.2411 4.2665 2 0 Median 609450000 303110000 306340000 445620000 209270000 236350000 163830000 93842000 69985000 11192 1342 11496 39961;39962;39963;39964;39965;39966;39967;39968 59984;59985;59986;59987;59988;59989;59990;59991;59992;59993;59994;59995;59996;59997 59989 14 SPQPESFK EESMTDDKITEVSCKSPQPESFKTSRSSKQ ITEVSCKSPQPESFKTSRSSKQRLKIPLVK K S P F K T 0 0 0 0 0 1 1 0 0 0 0 1 0 1 2 2 0 0 0 0 0 0 8 0 918.4447 P46013 P46013 2466 2473 MKI67 Antigen KI-67 yes yes 2 0.0025501 107.9 1 1 0.90205 1.279 13.615 2 Median 0.93517 1.1616 NaN 1 0 Median 0.87011 1.4082 NaN 1 0 Median 103650000 54640000 49007000 57034000 29982000 27052000 46613000 24658000 21955000 11193 1342 11497 39969;39970 59998;59999 59998 2 SPQPPAEEDEDDFDDTLVAIDTYNCDLHFK RGRGYFEHREDRRGRSPQPPAEEDEDDFDD TLVAIDTYNCDLHFKVARDRSSGYPLTIEG R S P F K V 2 0 1 7 1 1 3 0 1 1 2 1 0 2 3 1 2 0 1 1 0 0 30 0 3495.4936 M0R3F1;A8K3W4;A0A024R0J9;A0A0A0MRA5;B7Z4B8;A8K6U7;Q9BUJ2;M0QYZ0;M0QYI8;M0R0K8 M0R3F1 43 72 HNRNPUL1;HNRPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 3 3.8938E-13 99.093 3 0.57055 0.72438 35.334 3 Plateau 0.57055 0.72438 35.334 3 0 Plateau NaN NaN NaN 0 0 Median 21475000 15106000 6368600 21475000 15106000 6368600 0 0 0 11194 39 11498 39971;39972;39973 60000;60001;60002;60003 60000 4 SPQPPVEEEDEHFDDTVVCLDTYNCDLHFK GYFEYIEENKYSRAKSPQPPVEEEDEHFDD TVVCLDTYNCDLHFKISRDRLSASSLTMES K S P F K I 0 0 1 5 2 1 4 0 2 0 2 1 0 2 3 1 2 0 1 3 0 0 30 0 3634.5504 Q96BA7;B3KX72;B4DLR3;Q00839 Q96BA7 168 197 HNRNPU Heterogeneous nuclear ribonucleoprotein U no no 4 5.8559E-24 111.72 4 0.36434 0.4746 1.9069 4 Median 0.36434 0.4746 1.9069 4 0 Median NaN NaN NaN 0 0 Median 410070000 298480000 111590000 410070000 298480000 111590000 0 0 0 11195 788 11499 39974;39975;39976;39977 60004;60005;60006;60007;60008;60009 60007 6 SPQPVNDDNIR APSMPSQGLAKKNTKSPQPVNDDNIRETKN KNTKSPQPVNDDNIRETKNAVIRDLGKKIT K S P I R E 0 1 2 2 0 1 0 0 0 1 0 0 0 0 2 1 0 0 0 1 0 0 11 0 1253.6 A0A087WX60;Q86TC9 A0A087WX60 573 583 MYPN Myopalladin yes no 2 0.01551 93.178 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 943750 943750 0 943750 943750 0 0 0 0 11196 356 11500 39978 60010 60010 1 SPQQSAALPR EASAPKAALEPKESRSPQQSAALPRRYMLR PKESRSPQQSAALPRRYMLREREGAPEPAS R S P P R R 2 1 0 0 0 2 0 0 0 0 1 0 0 0 2 2 0 0 0 0 0 0 10 0 1053.5567 A0A0A6YYG7;Q6IBW4;E5RJN3 A0A0A6YYG7 284 293 NCAPH2 Condensin-2 complex subunit H2 yes no 2 5.2207E-06 115.71 1 2 0.35646 0.49472 24.918 3 Median 0.53373 0.73979 NaN 1 0 Median 0.33577 0.48167 3.7805 2 0 Median 17140000 12621000 4518300 4490300 2779300 1711000 12649000 9842100 2807300 11197 406 11501 39979;39980;39981 60011;60012;60013;60014 60013 4 SPSDLWK LRNEKEQELDTLKRKSPSDLWKEDLATFIE ELDTLKRKSPSDLWKEDLATFIEELEAVEA K S P W K E 0 0 0 1 0 0 0 0 0 0 1 1 0 0 1 2 0 1 0 0 0 0 7 0 831.41267 P11388;Q71UH4;Q02880;B4DKD0;Q59H80;B4DLV2;Q8WTY5;Q6W6M6;B7ZB27 P11388 1162 1168 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2 0.037247 56.122 1 0.83239 1.3057 NaN 1 Median NaN NaN NaN 0 0 Median 0.83239 1.3057 NaN 1 0 Median 27104000 14569000 12535000 0 0 0 27104000 14569000 12535000 11198 1256;1437 11502 39982 60015 60015 1 SPSDSSTASTPVAEQIER LDSHRRMAPTPIPTRSPSDSSTASTPVAEQ DSSTASTPVAEQIERALDEVTSSQPPPLPP R S P E R A 2 1 0 1 0 1 2 0 0 1 0 0 0 0 2 5 2 0 0 1 0 0 18 0 1860.8701 Q16643;B3KSQ7;B7Z2Z0;D6R9Q9 Q16643 337 354 DBN1 Drebrin yes no 2 8.7756E-24 158.11 4 0.9708 1.35 NaN 1 Median 0.9708 1.35 NaN 1 0 Median NaN NaN NaN 0 0 Median 8275900 7009100 1266800 8275900 7009100 1266800 0 0 0 11199 1523 11503 39983;39984;39985;39986 60016;60017;60018;60019;60020;60021;60022 60018 7 SPSELFAQHIVTIVHHVK FRSIFQHIQSAQSQRSPSELFAQHIVTIVH ELFAQHIVTIVHHVKEHHFGSSGMTLHERF R S P V K E 1 0 0 0 0 1 1 0 3 2 1 1 0 1 1 2 1 0 0 3 0 0 18 0 2041.1109 Q9Y2W1 Q9Y2W1 622 639 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 3 0.00039274 78.166 2 0.62891 0.7798 2.8008 2 Median 0.62891 0.7798 2.8008 2 0 Median NaN NaN NaN 0 0 Median 33108000 18216000 14891000 33108000 18216000 14891000 0 0 0 11200 1809 11504 39987;39988 60023;60024 60023 2 SPSLLQSGAK SALARKKARLSLVIRSPSLLQSGAKKKAQV SLVIRSPSLLQSGAKKKAQVRKAGKP____ R S P A K K 1 0 0 0 0 1 0 1 0 0 2 1 0 0 1 3 0 0 0 0 0 0 10 0 986.53966 Q9BQG0;I3L1L3;B4DE42;I3L2H8 Q9BQG0 1308 1317 MYBBP1A Myb-binding protein 1A yes no 2 0.013357 81.95 1 0.9263 1.1866 NaN 1 Median 0.9263 1.1866 NaN 1 0 Median NaN NaN NaN 0 0 Median 10676000 5296100 5379700 10676000 5296100 5379700 0 0 0 11201 1708 11505 39989 60025 60025 1 SPSQYHDFAEK RVPGRVGGREGMRGRSPSQYHDFAEKLKMS MRGRSPSQYHDFAEKLKMSPGRSRGPGGDP R S P E K L 1 0 0 1 0 1 1 0 1 0 0 1 0 1 1 2 0 0 1 0 0 0 11 0 1307.5782 W5ZR30;Q9UGU0 W5ZR30 1005 1015 TCF20 Transcription factor 20 yes no 2 0.02601 50.353 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11202 1783 11506 39990 60026 60026 1 SPTENTVFASCSADASIR RPFVGHTRSVEDLQRSPTENTVFASCSADA ENTVFASCSADASIRIWDIRAAPSKACMLT R S P I R I 3 1 1 1 1 0 1 0 0 1 0 0 0 1 1 4 2 0 0 1 0 0 18 0 1911.8633 B4DTI1 B4DTI1 67 84 yes yes 2 1.3845E-17 157.68 3 0.54619 0.72979 NaN 1 Median 0.54619 0.72979 NaN 1 0 Median NaN NaN NaN 0 0 Median 8305400 4493800 3811700 8305400 4493800 3811700 0 0 0 11203 858 11507 39991;39992;39993 60027;60028;60029;60030;60031 60027 5 SPTLYGISHDDLK VNWLGYAYLYIRMLRSPTLYGISHDDLKGD LRSPTLYGISHDDLKGDPLLDQRRLDLVHT R S P L K G 0 0 0 2 0 0 0 1 1 1 2 1 0 0 1 2 1 0 1 0 0 0 13 0 1444.7198 O75643;A4FU77;Q9H8B9 O75643 932 944 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 6.3816E-20 181.4 3 1 0.97741 1.3754 46.431 2 Median 0.76025 0.99047 NaN 1 0 Median 1.2566 1.9099 NaN 1 0 Median 26691000 11566000 15124000 14291000 5783500 8507400 12400000 5782900 6616800 11204 1206 11508 39994;39995;39996;39997 60032;60033;60034;60035;60036;60037 60032 6 SPVFSDEDSDLDFDISK MGERAENSSKSDLRKSPVFSDEDSDLDFDI VFSDEDSDLDFDISKLEQQSKVQNKGQGKP K S P S K L 0 0 0 5 0 0 1 0 0 1 1 1 0 2 1 4 0 0 0 1 0 0 17 0 1914.8371 B3KPV5;O00566;U3KQ48 B3KPV5 163 179 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 2 0.00025493 69.716 3 0.9203 1.1296 18.02 3 Median 0.9203 1.1296 18.02 3 0 Median NaN NaN NaN 0 0 Median 10803000 5607500 5195100 10803000 5607500 5195100 0 0 0 11205 767 11509 39998;39999;40000 60038;60039;60040 60040 3 SPVREPIDNLTPEER YRRRSRSKSPFRKDKSPVREPIDNLTPEER SPVREPIDNLTPEERDARTVFCMQLAARIR K S P E R D 0 2 1 1 0 0 3 0 0 1 1 0 0 0 3 1 1 0 0 1 0 0 15 1 1750.885 B4DRA0;B4DLM0;B3KWX7;Q68DD9;B4E1M7;Q14498;H0Y4X3;G3XAC6;Q5QP23;Q5QP22 B4DRA0 114 128 DKFZp781C0423;RBM39 RNA-binding protein 39 yes no 3 0.040534 54.974 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1857200 1857200 0 1857200 1857200 0 0 0 0 11206 786 11510 40001 60041 60041 1 SPYCCPECGVLCR NQCSFCAHQRIHAHKSPYCCPECGVLCRSA HKSPYCCPECGVLCRSAYFQTHVKENCLHY K S P C R S 0 1 0 0 4 0 1 1 0 0 1 0 0 0 2 1 0 0 1 1 0 0 13 0 1656.6517 Q92610;H0YM74 Q92610 766 778 ZNF592 Zinc finger protein 592 yes no 2 0.0024968 89.561 1 0.83875 1.1314 NaN 1 Median 0.83875 1.1314 NaN 1 0 Median NaN NaN NaN 0 0 Median 1293300 404490 888800 1293300 404490 888800 0 0 0 11207 1672 11511 40002 60042 60042 1 SPYQEFTDHLVK SYLTPDLWKETVFTKSPYQEFTDHLVKTHT FTKSPYQEFTDHLVKTHTRVSVQRTQAPAV K S P V K T 0 0 0 1 0 1 1 0 1 0 1 1 0 1 1 1 1 0 1 1 0 0 12 0 1462.7092 P15880;Q8J014;Q8N5L9;Q3KQT6;H0YEN5;E9PQD7;Q9BSW5;O60249;A4D0Y7;Q8NI62 P15880 264 275 RPS2;rps2;LOC392781;OK/KNS-cl.6 40S ribosomal protein S2 no no 2;3 4.9189E-29 179.19 9 3 0.74966 0.93722 19.145 10 Median 0.78835 1.0246 14.119 7 0 Median 0.458 0.72044 2.5242 3 0 Median 1075000000 653730000 421230000 858480000 511240000 347240000 216480000 142500000 73988000 11208 1269;1657 11512 40003;40004;40005;40006;40007;40008;40009;40010;40011;40012;40013;40014 60043;60044;60045;60046;60047;60048;60049;60050;60051;60052;60053;60054;60055;60056;60057;60058;60059;60060;60061 60055 19 SPYTVTVGQACNPSACR VHTVHVTFAGVPIPRSPYTVTVGQACNPSA YTVTVGQACNPSACRAVGRGLQPKGVRVKE R S P C R A 2 1 1 0 2 1 0 1 0 0 0 0 0 0 2 2 2 0 1 2 0 0 17 0 1866.8353 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98 P21333 468 484 FLNA Filamin-A yes no 2 4.9371E-14 153.81 4 0.88017 1.1744 19.491 4 Median 0.88017 1.1744 19.491 4 0 Median NaN NaN NaN 0 0 Median 23821000 12827000 10994000 23821000 12827000 10994000 0 0 0 11209 1287 11513 40015;40016;40017;40018 60062;60063;60064;60065;60066;60067;60068;60069;60070;60071 60066 10 SQAASILTK GDVFDPHGTLSGGARSQAASILTKFQELKD LSGGARSQAASILTKFQELKDVQDELRIKE R S Q T K F 2 0 0 0 0 1 0 0 0 1 1 1 0 0 0 2 1 0 0 0 0 0 9 0 917.5182 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;B3KM27 A0A024R158 669 677 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.0050942 99.136 3 2 0.68821 0.96004 5.5356 5 Median 0.70992 0.90523 6.8551 3 0 Median 0.60472 0.96039 0.05196 2 0 Median 244730000 139030000 105710000 163840000 90527000 73312000 80892000 48498000 32394000 11210 50 11514 40019;40020;40021;40022;40023 60072;60073;60074;60075;60076;60077;60078;60079 60072 8 SQACEPSEPEIEIK GNKGKGKGKGKGKPKSQACEPSEPEIEIKL KSQACEPSEPEIEIKLPKLRTLDVFSGCGG K S Q I K L 1 0 0 0 1 1 4 0 0 2 0 1 0 0 2 2 0 0 0 0 0 0 14 0 1615.74 A0A024R7E3;P26358;Q59FP7;B3KVA0;I6L9H2 A0A024R7E3 1184 1197 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 no no 2 8.4469E-33 196.67 3 1 0.41724 0.52975 13.118 3 Median 0.41724 0.52975 13.118 3 0 Median NaN NaN NaN 0 0 Median 29209000 18137000 11072000 25997000 18137000 7860000 3211600 0 3211600 11211 176;1129 11515 40024;40025;40026;40027 60080;60081;60082;60083;60084;60085;60086 60082 7 SQAFIEMETR EPYGKIKNYILMRMKSQAFIEMETREDAMA LMRMKSQAFIEMETREDAMAMVDHCLKKAL K S Q T R E 1 1 0 0 0 1 2 0 0 1 0 0 1 1 0 1 1 0 0 0 0 0 10 0 1210.5652 A0A0R4J2E8;A8MXP9;P43243;D6REM6;Q68D11;H0Y8T4;Q5CZA7;B3KM87;B4DRS1;B4DF66;Q9H4N1 A0A0R4J2E8 533 542 MATR3;DKFZp686K23100;DKFZp686K0542 Matrin-3 yes no 2 0.03034 50.452 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9537100 0 9537100 0 0 0 9537100 0 9537100 11212 445 11516 40028 60087 60087 1 SQAPLESSLDSLGDVFLDSGRK VESLESLYFTPIPARSQAPLESSLDSLGDV SLDSLGDVFLDSGRKTRSARRRTTQIINIT R S Q R K T 1 1 0 3 0 1 1 2 0 0 4 1 0 1 1 5 0 0 0 1 0 0 22 1 2320.1547 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1768 1789 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 1.885E-19 127.5 4 2 0.74151 0.98407 48.028 6 Median 0.90608 1.2003 25.056 4 0 Median 0.29894 0.51901 2.2522 2 0 Median 308060000 200460000 107600000 134870000 69035000 65832000 173190000 131420000 41771000 11213 148;1499 11517 40029;40030;40031;40032;40033;40034 60088;60089;60090;60091;60092;60093;60094;60095;60096;60097 60089 10 SQASTTVDINTQVEK SVEADKSSPGIHLERSQASTTVDINTQVEK SQASTTVDINTQVEKEVPPGSAIIHIKKHQ R S Q E K E 1 0 1 1 0 2 1 0 0 1 0 1 0 0 0 2 3 0 0 2 0 0 15 0 1619.8002 Q14676;B4DYH4 Q14676 513 527 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 2 0.00023519 58.674 1 2 0.81111 1.1852 42.35 3 Median 1.819 2.3287 NaN 1 0 Median 0.78371 1.1246 7.4174 2 0 Median 15384000 7607000 7776700 3797400 1292300 2505100 11586000 6314700 5271600 11214 1491 11518 40035;40036;40037 60098;60099;60100;60101;60102;60103;60104 60098 7 SQAVEKPPSEKPR SATRTRRSASQAGSKSQAVEKPPSEKPRLR SKSQAVEKPPSEKPRLRRSSPRAQEEGPGE K S Q P R L 1 1 0 0 0 1 2 0 0 0 0 2 0 0 3 2 0 0 0 1 0 0 13 2 1451.7732 A0A0M3HER2;Q7Z7K6 Q7Z7K6 53 65 CENPV Centromere protein V no no 2;3 4.889E-05 135.1 5 1.1354 1.3603 2.8594 5 Median 1.1354 1.3603 2.8594 5 0 Median NaN NaN NaN 0 0 Median 80212000 36051000 44160000 80212000 36051000 44160000 0 0 0 11215 1619;444 11519 40038;40039;40040;40041;40042 60105;60106;60107;60108;60109;60110;60111;60112 60107 7 SQDFGNLFSFPSYSQK GKSKASPEKSLHDKKSQDFGNLFSFPSYSQ QDFGNLFSFPSYSQKSEDDSAKFDSNEEDS K S Q Q K S 0 0 1 1 0 2 0 1 0 0 1 1 0 3 1 4 0 0 1 0 0 0 16 0 1850.8475 Q71UH4;Q02880;Q59H80;B4DLV2;Q8WTY5;B7ZB27 Q71UH4 1413 1428 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 1.4643E-31 179.5 3 2 0.58089 0.7956 8.4936 4 Median 0.69793 0.85767 2.7531 2 0 Median 0.4714 0.74308 1.7859 2 0 Median 136760000 84690000 52069000 74278000 43616000 30662000 62481000 41074000 21407000 11216 1437 11520 40043;40044;40045;40046;40047 60113;60114;60115;60116;60117;60118;60119;60120;60121 60113 9 SQDLDEELGSTAAGEIVEADVAIGKGDETPLTNVK AGVVPATSMEPPELRSQDLDEELGSTAAGE VAIGKGDETPLTNVKTEASPESMLSPSHGS R S Q V K T 4 0 1 4 0 1 5 4 0 2 3 2 0 0 1 2 3 0 0 3 0 0 35 1 3570.7425 H0YAH7;B4DMS9;B4DSD6;B4DEG9;H7C128;H7C179;B4DN43;B5MCW3;H7C127;B2R5V7;A8K1N6;Q9H0E9 H0YAH7 193 227 BRD8 Bromodomain-containing protein 8 yes no 3 0.0005145 72.221 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11217 580 11521 40048 60122 60122 1 SQDLESVQEVGGSYWQR GTVQQKRRQKMQQKKSQDLESVQEVGGSYW DLESVQEVGGSYWQRVTLILELLQHKKKLR K S Q Q R V 0 1 0 1 0 3 2 2 0 0 1 0 0 0 0 3 0 1 1 2 0 0 17 0 1966.9021 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8 B2RWN5 1190 1206 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.0052058 35.35 2 0.5452 0.78063 9.2324 2 Median NaN NaN NaN 0 0 Median 0.5452 0.78063 9.2324 2 0 Median 16986000 10843000 6143300 0 0 0 16986000 10843000 6143300 11218 748 11522 40049;40050 60123;60124 60123 2 SQDVELWEGEVVK VDNTFAEEFTTQNQKSQDVELWEGEVVKEL QKSQDVELWEGEVVKELSVEEQIKRNRYYD K S Q V K E 0 0 0 1 0 1 3 1 0 0 1 1 0 0 0 1 0 1 0 3 0 0 13 0 1516.7409 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2 F8VQE1 565 577 LIMA1 LIM domain and actin-binding protein 1 yes no 2 0.048542 36.32 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3991300 0 3991300 0 0 0 3991300 0 3991300 11219 834 11523 40051 60125 60125 1 SQEDTEAVFK LPLWISWAEWSEGAKSQEDTEAVFKKALLA SEGAKSQEDTEAVFKKALLAVIGADSVTLK K S Q F K K 1 0 0 1 0 1 2 0 0 0 0 1 0 1 0 1 1 0 0 1 0 0 10 0 1152.5299 B3KQ21;Q9NYH9;B3KX32;Q9P1J8 B3KQ21 453 462 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 0.001275 80.219 3 2 0.75916 0.96124 29.808 2 Median 0.75916 0.96124 29.808 2 0 Median NaN NaN NaN 0 0 Median 30248000 19518000 10730000 23137000 12407000 10730000 7111400 7111400 0 11220 768 11524 40052;40053;40054;40055;40056 60126;60127;60128;60129;60130 60130 5 SQEDTEAVFKK LPLWISWAEWSEGAKSQEDTEAVFKKALLA EGAKSQEDTEAVFKKALLAVIGADSVTLKN K S Q K K A 1 0 0 1 0 1 2 0 0 0 0 2 0 1 0 1 1 0 0 1 0 0 11 1 1280.6248 B3KQ21;Q9NYH9;B3KX32;Q9P1J8 B3KQ21 453 463 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2;3 3.3416E-06 111.06 5 1 1.0368 1.2767 22.349 5 Linear 1.0368 1.2767 22.349 5 0 Linear NaN NaN NaN 0 0 Median 56588000 30656000 25932000 53800000 27868000 25932000 2788100 2788100 0 11221 768 11525 40057;40058;40059;40060;40061;40062 60131;60132;60133;60134;60135;60136;60137;60138;60139;60140 60136 10 SQEEPKDTFEHDPSESIDEFNK KAEGEPQEESPLKSKSQEEPKDTFEHDPSE TFEHDPSESIDEFNKSSATSGDIWPGLSAY K S Q N K S 0 0 1 3 0 1 5 0 1 1 0 2 0 2 2 3 1 0 0 0 0 0 22 1 2607.1249 Q6DCA8;E9PK09;E9PQN2;E9PKI6;E9PK91;Q9NYF8;E9PJA7 Q6DCA8 183 204 BCLAF1 Bcl-2-associated transcription factor 1 yes no 3 3.1693E-05 57.806 3 0.65447 0.79784 NaN 1 Median 0.65447 0.79784 NaN 1 0 Median NaN NaN NaN 0 0 Median 9487300 5943000 3544300 9487300 5943000 3544300 0 0 0 11222 1036 11526 40063;40064;40065 60141;60142;60143;60144 60144 4 SQEIFLNLK GIQQLKDAAEREKLKSQEIFLNLKTALEKY EREKLKSQEIFLNLKTALEKYHDGIEKAAE K S Q L K T 0 0 1 0 0 1 1 0 0 1 2 1 0 1 0 1 0 0 0 0 0 0 9 0 1090.6023 Q9BZD4;A0A024R8Y0;E9PQC4 Q9BZD4 419 427 NUF2;CDCA1 Kinetochore protein Nuf2 yes no 2 0.0022461 84.368 2 0.54063 0.81099 9.8803 2 Median NaN NaN NaN 0 0 Median 0.54063 0.81099 9.8803 2 0 Median 22432000 14697000 7734900 0 0 0 22432000 14697000 7734900 11223 1727 11527 40066;40067 60145;60146 60145 2 SQFEELCAELLQK ECFMNDKDVSGKMNRSQFEELCAELLQKIE NRSQFEELCAELLQKIEVPLYSLLEQTHLK R S Q Q K I 1 0 0 0 1 2 3 0 0 0 3 1 0 1 0 1 0 0 0 0 0 0 13 0 1593.7709 A0A024RDQ0;A0A024RDS1;Q92598;B4DF68;B4DZB4;A0A0A0MSM0;B4DY72 A0A024RDQ0 304 316 HSPH1 Heat shock protein 105 kDa yes no 2 0.020664 44.188 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2045100 0 2045100 2045100 0 2045100 0 0 0 11224 320 11528 40068 60147 60147 1 SQFYFLTK VPESFTSEAYQWLNRSQFYFLTKSQSLLTF AYQWLNRSQFYFLTKSQSLLTFSTKSPEEK R S Q T K S 0 0 0 0 0 1 0 0 0 0 1 1 0 2 0 1 1 0 1 0 0 0 8 0 1032.528 A8K330;Q8IWA0 A8K330 654 661 WDR75 WD repeat-containing protein 75 yes no 2 0.03602 75.043 2 0.88743 1.1094 5.7361 2 Median 0.88743 1.1094 5.7361 2 0 Median NaN NaN NaN 0 0 Median 64836000 34330000 30506000 64836000 34330000 30506000 0 0 0 11225 588 11529 40069;40070 60148;60149 60148 2 SQGCSEQVLTVLK SWVQSYCRLSHCRSRSQGCSEQVLTVLKTV SRSQGCSEQVLTVLKTVSLLDENNVSSYLS R S Q L K T 0 0 0 0 1 2 1 1 0 0 2 1 0 0 0 2 1 0 0 2 0 0 13 0 1447.7341 P78527 P78527 3290 3302 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00013197 116.03 3 0.46702 0.59347 12.19 3 Median 0.46702 0.59347 12.19 3 0 Median NaN NaN NaN 0 0 Median 42844000 29256000 13588000 42844000 29256000 13588000 0 0 0 11226 1427 11530 40071;40072;40073 60150;60151;60152;60153 60151 4 SQGDPEDPHDEHYLLATQSK TFGIVGQKMTTLQHRSQGDPEDPHDEHYLL EDPHDEHYLLATQSKQEQSAKATADRKSAS R S Q S K Q 1 0 0 3 0 2 2 1 2 0 2 1 0 0 2 2 1 0 1 0 0 0 20 0 2266.0138 Q9H981;H0Y849 Q9H981 412 431 ACTR8 Actin-related protein 8 yes no 3 0.0034287 49.655 2 0.88787 1.1491 28.617 2 Median 0.88787 1.1491 28.617 2 0 Median NaN NaN NaN 0 0 Median 8392800 4113500 4279200 8392800 4113500 4279200 0 0 0 11227 1744 11531 40074;40075 60154;60155;60156 60154 3 SQGGVQPIPSQGGK HCGAFSGSDSSRTSKSQGGVQPIPSQGGKL KSQGGVQPIPSQGGKLEIAGTVVGHWAGSR K S Q G K L 0 0 0 0 0 3 0 4 0 1 0 1 0 0 2 2 0 0 0 1 0 0 14 0 1338.6892 Q9NZB2 Q9NZB2 933 946 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes yes 2 1.4458E-05 132.03 2 0.62803 0.7795 NaN 1 Median 0.62803 0.7795 NaN 1 0 Median NaN NaN NaN 0 0 Median 3350600 1806000 1544600 3350600 1806000 1544600 0 0 0 11228 1771 11532 40076;40077 60157;60158 60157 2 SQGLSQLYHNQSQGLLSQLQGQSK PTQSQFGEMGGKFMKSQGLSQLYHNQSQGL NQSQGLLSQLQGQSKDMPPRFSKKGQLNAD K S Q S K D 0 0 1 0 0 7 0 3 1 0 5 1 0 0 0 5 0 0 1 0 0 0 24 0 2628.3256 D3DQV9;Q59G42;B4DZF2;P78344;Q2TU89 D3DQV9 432 455 EIF4G2;AAG1 Eukaryotic translation initiation factor 4 gamma 2 yes no 3 2.5252E-09 99.13 4 0.26771 0.34607 NaN 1 Median 0.26771 0.34607 NaN 1 0 Median NaN NaN NaN 0 0 Median 36093000 35195000 897900 36093000 35195000 897900 0 0 0 11229 877 11533 40078;40079;40080;40081 60159;60160;60161;60162 60159 4 SQHDILQMICSK RKSGNLPSKRVSISRSQHDILQMICSKRRS ISRSQHDILQMICSKRRSGASEANLIVAKS R S Q S K R 0 0 0 1 1 2 0 0 1 2 1 1 1 0 0 2 0 0 0 0 0 0 12 0 1458.6959 P46013;Q70L73 P46013 634 645 MKI67 Antigen KI-67 no no 2 0.022915 39.022 1 0.65036 0.87001 NaN 1 Median NaN NaN NaN 0 0 Median 0.65036 0.87001 NaN 1 0 Median 3108000 1985800 1122200 0 0 0 3108000 1985800 1122200 11230 1342;1604 11534 40082 60163 60163 1 SQIDVALSQDSTYQGER QPELSQDSYLGDEFKSQIDVALSQDSTYQG IDVALSQDSTYQGERAYQHGGVTGLSQY__ K S Q E R A 1 1 0 2 0 3 1 1 0 1 1 0 0 0 0 3 1 0 1 1 0 0 17 0 1895.8861 A0A024R7L5;A0A024R7L8;Q92900;B3KY55;A0A059XG73;A0A059XBJ6;A0A059XAM1;A0A059XAL6 A0A024R7L5 1089 1105 UPF1 Regulator of nonsense transcripts 1 yes no 2 5.7293E-05 65.956 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3126900 0 3126900 0 0 0 3126900 0 3126900 11231 180 11535 40083 60164 60164 1 SQIFSTASDNQPTVTIK MTKLIPRNTVVPTKKSQIFSTASDNQPTVT IFSTASDNQPTVTIKVYEGERPLTKDNHLL K S Q I K V 1 0 1 1 0 2 0 0 0 2 0 1 0 1 1 3 3 0 0 1 0 0 17 0 1835.9265 V9HWB4;P11021 V9HWB4 448 464 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 2 1.1202E-50 211.82 4 2 0.43917 0.55327 48.46 6 Median 0.41965 0.52868 14.15 4 0 Median 0.84431 1.266 0.36076 2 0 Median 48307000 30617000 17689000 25512000 18078000 7433800 22794000 12539000 10255000 11232 1252 11536 40084;40085;40086;40087;40088;40089 60165;60166;60167;60168;60169;60170;60171;60172;60173;60174;60175;60176 60169 12 SQIHDIVLVGGSTR LDPVEKALRDAKLDKSQIHDIVLVGGSTRI KSQIHDIVLVGGSTRIPKIQKLLQDFFNGK K S Q T R I 0 1 0 1 0 1 0 2 1 2 1 0 0 0 0 2 1 0 0 2 0 0 14 0 1480.7998 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;Q53HF2;E9PN89;E9PNE6;B4E1Q1;A8K7Q2 V9HW22 329 342 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 2;3 5.1546E-08 106.17 8 4 0.60018 0.81957 48.471 12 Median 0.59311 0.80307 5.667 8 0 Median 1.3811 2.1108 5.6805 4 0 Median 677740000 394210000 283530000 560520000 347480000 213040000 117220000 46736000 70485000 11233 1253 11537 40090;40091;40092;40093;40094;40095;40096;40097;40098;40099;40100;40101 60177;60178;60179;60180;60181;60182;60183;60184;60185;60186;60187;60188;60189;60190;60191;60192;60193;60194;60195;60196;60197;60198 60190 22 SQIPLSK HIWNMLNPPAEVTTKSQIPLSKIKTLFPLI PPAEVTTKSQIPLSKIKTLFPLIEAKKKDQ K S Q S K I 0 0 0 0 0 1 0 0 0 1 1 1 0 0 1 2 0 0 0 0 0 0 7 0 771.44905 P13010;Q53T09 P13010 526 532 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 0.0045902 147.69 4 0.59189 0.76353 3.951 4 Median 0.59189 0.76353 3.951 4 0 Median NaN NaN NaN 0 0 Median 252310000 159090000 93217000 252310000 159090000 93217000 0 0 0 11234 1262 11538 40102;40103;40104;40105 60199;60200;60201;60202;60203 60199 5 SQISVYSELNK PEAKRLLINLYKLVKSQISVYSELNKIEVS KLVKSQISVYSELNKIEVSFRELQKLNQEK K S Q N K I 0 0 1 0 0 1 1 0 0 1 1 1 0 0 0 3 0 0 1 1 0 0 11 0 1266.6456 Q9H8H0 Q9H8H0 680 690 NOL11 Nucleolar protein 11 yes yes 2 0.00090781 75.294 1 2 0.65406 0.98175 9.1493 3 Median 0.90633 1.1439 NaN 1 0 Median 0.64933 0.97652 0.75579 2 0 Median 47695000 27157000 20538000 11419000 5589900 5828900 36276000 21567000 14709000 11235 1743 11539 40106;40107;40108 60204;60205;60206;60207;60208;60209 60204 6 SQLDIIIHSLK RHIEIFTDLSSRFSKSQLDIIIHSLKKCDI RFSKSQLDIIIHSLKKCDISLQFFLPFSLG K S Q L K K 0 0 0 1 0 1 0 0 1 3 2 1 0 0 0 2 0 0 0 0 0 0 11 0 1265.7343 P13010;Q53TC2 P13010 145 155 XRCC5 X-ray repair cross-complementing protein 5 yes no 2;3 1.6022E-06 134.57 10 3 0.53679 0.67829 9.3176 10 Median 0.53978 0.70519 7.5416 7 0 Median 0.41644 0.64289 14.834 3 0 Median 445570000 301780000 143790000 387490000 260620000 126870000 58086000 41160000 16926000 11236 1262 11540 40109;40110;40111;40112;40113;40114;40115;40116;40117;40118;40119;40120;40121 60210;60211;60212;60213;60214;60215;60216;60217;60218;60219;60220;60221;60222;60223;60224;60225;60226;60227 60221 17 SQLDIIIHSLKK RHIEIFTDLSSRFSKSQLDIIIHSLKKCDI FSKSQLDIIIHSLKKCDISLQFFLPFSLGK K S Q K K C 0 0 0 1 0 1 0 0 1 3 2 2 0 0 0 2 0 0 0 0 0 0 12 1 1393.8293 P13010;Q53TC2 P13010 145 156 XRCC5 X-ray repair cross-complementing protein 5 yes no 3 0.0087347 33.968 1 0.57587 0.71064 NaN 1 Median 0.57587 0.71064 NaN 1 0 Median NaN NaN NaN 0 0 Median 39680000 27071000 12609000 39680000 27071000 12609000 0 0 0 11237 1262 11541 40122 60228 60228 1 SQLILPPPVHVDYR LQYLLWVFLPDQDQRSQLILPPPVHVDYRA RSQLILPPPVHVDYRAACFCHRNLIEIGYV R S Q Y R A 0 1 0 1 0 1 0 0 1 1 2 0 0 0 3 1 0 0 1 2 0 0 14 0 1632.8988 F5GWD3;Q13889;A0A087WYD5;H0YFF7 F5GWD3 196 209 GTF2H3 General transcription factor IIH subunit 3 yes no 3 0.041573 18.833 1 0.47659 0.63581 NaN 1 Median 0.47659 0.63581 NaN 1 0 Median NaN NaN NaN 0 0 Median 3050500 2015900 1034500 3050500 2015900 1034500 0 0 0 11238 1052 11542 40123 60229 60229 1 SQLLGSAHEVQR LNERWRSLQQLAEERSQLLGSAHEVQRFHR EERSQLLGSAHEVQRFHRDADETKEWIEEK R S Q Q R F 1 1 0 0 0 2 1 1 1 0 2 0 0 0 0 2 0 0 0 1 0 0 12 0 1323.6895 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;Q9UG16 Q13813 1226 1237 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 2.3646E-12 131.83 4 0.77975 1.0328 8.7734 3 Median 0.77975 1.0328 8.7734 3 0 Median NaN NaN NaN 0 0 Median 48804000 24102000 24702000 48804000 24102000 24702000 0 0 0 11239 1476 11543 40124;40125;40126;40127 60230;60231;60232;60233;60234;60235;60236 60234 7 SQLLQYVYNLVPR AEINILLCGDPGTSKSQLLQYVYNLVPRGQ SKSQLLQYVYNLVPRGQYTSGKGSSAVGLT K S Q P R G 0 1 1 0 0 2 0 0 0 0 3 0 0 0 1 1 0 0 2 2 0 0 13 0 1591.8722 B4DLA6;B3KMX0;A0A024R7U6;P33991;E5RG31 B4DLA6 477 489 MCM4 DNA replication licensing factor MCM4 yes no 2 2.5095E-25 213.35 5 0.45491 0.60711 30.002 4 Median 0.45491 0.60711 30.002 4 0 Median NaN NaN NaN 0 0 Median 41529000 30248000 11281000 41529000 30248000 11281000 0 0 0 11240 185 11544 40128;40129;40130;40131;40132 60237;60238;60239;60240;60241;60242 60237 6 SQLLSYIDR GNINICLMGDPGVAKSQLLSYIDRLAPRSQ DPGVAKSQLLSYIDRLAPRSQYTTGRGSSG K S Q D R L 0 1 0 1 0 1 0 0 0 1 2 0 0 0 0 2 0 0 1 0 0 0 9 0 1093.5768 B2RBA6;A0A0S2Z4A5;P33993;B3KUD7;B4DDF5;C6EMX8;Q9H4N9 B2RBA6 388 396 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 2 0.0015729 111.06 2 1 0.31903 0.43742 128.59 3 Median 0.30747 0.42059 5.5495 2 0 Median 3.0524 3.8966 NaN 1 0 Median 23936000 14890000 9046100 19095000 13533000 5561700 4841400 1357000 3484400 11241 464 11545 40133;40134;40135 60243;60244;60245 60243 3 SQLNCLLLSGR RIQNPRGLEHKVYLKSQLNCLLLSGRDNWE VYLKSQLNCLLLSGRDNWEDEPQEPQEPNK K S Q G R D 0 1 1 0 1 1 0 1 0 0 4 0 0 0 0 2 0 0 0 0 0 0 11 0 1259.6656 Q6RFH5;E9PS41 Q6RFH5 312 322 WDR74 WD repeat-containing protein 74 yes no 2 6.8342E-19 199.33 5 0.83835 1.1336 29.5 3 Median 0.83835 1.1336 29.5 3 0 Median NaN NaN NaN 0 0 Median 115290000 66783000 48505000 115290000 66783000 48505000 0 0 0 11242 1598 11546 40136;40137;40138;40139;40140 60246;60247;60248;60249;60250;60251;60252;60253;60254 60249 9 SQMDGLIPGVEPR CIHSPVVNELMRGIRSQMDGLIPGVEPREM IRSQMDGLIPGVEPREMAAMCLGLAHSLSR R S Q P R E 0 1 0 1 0 1 1 2 0 1 1 0 1 0 2 1 0 0 0 1 0 0 13 0 1397.6973 Q9Y2X3;B3KN82;B4DUY3 Q9Y2X3 121 133 NOP58 Nucleolar protein 58 yes no 2 4.717E-06 88.803 2 2 0.45113 0.73475 25.412 4 Median 0.50669 0.68965 43.545 2 0 Median 0.45113 0.73475 0.95779 2 0 Median 157720000 107340000 50377000 11072000 6457500 4614900 146650000 100890000 45762000 11243 1810 11547;11548 40141;40142;40143;40144 60255;60256;60257;60258;60259;60260;60261;60262 60259 841 8 SQNEAVCEGLR IATLQKLLRQLEMQKSQNEAVCEGLRTQIR EMQKSQNEAVCEGLRTQIRELWDRLQIPEE K S Q L R T 1 1 1 0 1 1 2 1 0 0 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1261.5721 A0A024RC67;O43663 A0A024RC67 230 240 PRC1 Protein regulator of cytokinesis 1 yes no 2 3.8385E-06 108.67 5 0.74711 1.0123 NaN 1 Median 0.74711 1.0123 NaN 1 0 Median NaN NaN NaN 0 0 Median 39318000 24465000 14853000 39318000 24465000 14853000 0 0 0 11244 288 11549 40145;40146;40147;40148;40149 60263;60264;60265;60266;60267 60267 5 SQNFDLVICYK LNSCTPGMRKWWQIKSQNFDLVICYKVGKF WQIKSQNFDLVICYKVGKFYELYHMDALIG K S Q Y K V 0 0 1 1 1 1 0 0 0 1 1 1 0 1 0 1 0 0 1 1 0 0 11 0 1385.6649 P52701;A0A087WWJ1;Q1L838 P52701 418 428 MSH6;GTBP DNA mismatch repair protein Msh6 yes no 2 0.034088 44.863 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3061000 3061000 0 3061000 3061000 0 0 0 0 11245 1365 11550 40150 60268 60268 1 SQNIVTDSSSLSAEAIR EIQGHQPRIDDIFERSQNIVTDSSSLSAEA NIVTDSSSLSAEAIRQRLADLKQLWGLLIE R S Q I R Q 2 1 1 1 0 1 1 0 0 2 1 0 0 0 0 5 1 0 0 1 0 0 17 0 1776.8854 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24 B2ZZ89 1548 1564 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 3.5075E-25 215.09 4 1 0.87236 1.1879 50.643 5 Median 0.87202 1.1745 5.9181 4 0 Median 2.3923 3.5918 NaN 1 0 Median 74889000 37180000 37710000 67695000 35021000 32674000 7193800 2158100 5035700 11246 346 11551 40151;40152;40153;40154;40155 60269;60270;60271;60272;60273;60274;60275;60276;60277 60270 9 SQNTELASTASLLR LERISRLEEKVKTLKSQNTELASTASLLRE KSQNTELASTASLLREQVAQLKQKVLSHVN K S Q L R E 2 1 1 0 0 1 1 0 0 0 3 0 0 0 0 3 2 0 0 0 0 0 14 0 1489.7736 P17535;U3KPR5 P17535 305 318 JUND Transcription factor jun-D yes no 2 5.4465E-21 176.42 3 0.89522 1.2165 2.8393 3 Plateau 0.89522 1.2165 2.8393 3 0 Plateau NaN NaN NaN 0 0 Median 26023000 14327000 11696000 26023000 14327000 11696000 0 0 0 11247 1276 11552 40156;40157;40158 60278;60279;60280;60281 60278 4 SQPAASTLESK AGNSDSMCLRSRKTKSQPAASTLESKSVQR RKTKSQPAASTLESKSVQRVTRSVKRCAEN K S Q S K S 2 0 0 0 0 1 1 0 0 0 1 1 0 0 1 3 1 0 0 0 0 0 11 0 1117.5615 P46013 P46013 3207 3217 MKI67 Antigen KI-67 yes yes 2 0.0027524 63.073 1 1 0.94666 1.2989 12.977 2 Median 0.9541 1.185 NaN 1 0 Median 0.93927 1.4237 NaN 1 0 Median 70752000 36525000 34227000 56860000 29174000 27686000 13892000 7351000 6541200 11248 1342 11553 40159;40160 60282;60283 60282 2 SQPDPVDTPTSSK DKPTTHEKTTKIACRSQPDPVDTPTSSKPQ CRSQPDPVDTPTSSKPQSKRSLRKVDVEEE R S Q S K P 0 0 0 2 0 1 0 0 0 0 0 1 0 0 3 3 2 0 0 1 0 0 13 0 1357.6361 P46013 P46013 1496 1508 MKI67 Antigen KI-67 yes yes 2 7.0223E-05 120.86 4 2 0.96699 1.2977 14.88 6 Median 0.94533 1.1748 9.6986 4 0 Median 0.9903 1.5415 5.706 2 0 Median 159040000 78768000 80268000 103910000 50920000 52989000 55127000 27848000 27279000 11249 1342 11554 40161;40162;40163;40164;40165;40166 60284;60285;60286;60287;60288;60289;60290;60291;60292;60293;60294 60287 11 SQPDPVDTPTSSKPQSK DKPTTHEKTTKIACRSQPDPVDTPTSSKPQ PDPVDTPTSSKPQSKRSLRKVDVEEEFFAL R S Q S K R 0 0 0 2 0 2 0 0 0 0 0 2 0 0 4 4 2 0 0 1 0 0 17 1 1797.8745 P46013 P46013 1496 1512 MKI67 Antigen KI-67 yes yes 2;3 1.0066E-59 204.17 7 4 0.93915 1.2421 15.739 11 Median 0.92833 1.1341 6.0172 7 0 Median 0.99641 1.6148 2.8882 4 0 Linear 814130000 410510000 403620000 473880000 235230000 238650000 340250000 175290000 164970000 11250 1342 11555 40167;40168;40169;40170;40171;40172;40173;40174;40175;40176;40177 60295;60296;60297;60298;60299;60300;60301;60302;60303;60304;60305;60306;60307;60308;60309;60310;60311;60312;60313 60295 19 SQPFVDHVFTFTILDNR ELLIQIFSTPRYHPKSQPFVDHVFTFTILD PFVDHVFTFTILDNRIWFRNFQIIEEDAAL K S Q N R I 0 1 1 2 0 1 0 0 1 1 1 0 0 3 1 1 2 0 0 2 0 0 17 0 2035.0163 Q8TDN6 Q8TDN6 198 214 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 2;3 3.7344E-19 127.57 8 3 0.94981 1.2875 17.894 10 Median 0.98006 1.3423 4.7196 7 0 Median 0.68789 1.1255 23.776 3 0 Median 1175000000 617680000 557300000 880340000 453180000 427160000 294630000 164490000 130140000 11251 1659 11556 40178;40179;40180;40181;40182;40183;40184;40185;40186;40187;40188 60314;60315;60316;60317;60318;60319;60320;60321;60322;60323;60324;60325;60326;60327;60328;60329;60330;60331 60326 18 SQQAAQSADVSLNPCNTPQK KLEQELKRCKSELERSQQAAQSADVSLNPC QSADVSLNPCNTPQKIFTTPLTPSQYYSGS R S Q Q K I 3 0 2 1 1 4 0 0 0 0 1 1 0 0 2 3 1 0 0 1 0 0 20 0 2142.9964 P49454 P49454 128 147 CENPF Centromere protein F yes yes 2 8.1166E-06 113.67 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 588330 0 588330 588330 0 588330 0 0 0 11252 1351 11557 40189;40190 60332;60333 60332 2 SQQCQGNELTRPSASSQEK AETGGTHKRDFSEIKSQQCQGNELTRPSAS QGNELTRPSASSQEKSSGKSQDVQRESEPL K S Q E K S 1 1 1 0 1 4 2 1 0 0 1 1 0 0 1 4 1 0 0 0 0 0 19 1 2133.9709 A0A024R0F1;Q9UNY4 A0A024R0F1 221 239 TTF2 Transcription termination factor 2 yes no 2;3 3.9111E-16 169.64 5 2 0.86714 1.1588 11.18 7 Median 0.89476 1.1591 7.1889 5 0 Median 0.63924 0.95477 2.3192 2 0 Median 53893000 28797000 25095000 45113000 23620000 21492000 8780000 5177000 3603000 11253 33 11558 40191;40192;40193;40194;40195;40196;40197 60334;60335;60336;60337;60338;60339;60340;60341;60342;60343 60336 9 SQQQPTPVTPK FGTEEPAYSTRRVTRSQQQPTPVTPKKYPL RVTRSQQQPTPVTPKKYPLRQTRSSGSETE R S Q P K K 0 0 0 0 0 3 0 0 0 0 0 1 0 0 3 1 2 0 0 1 0 0 11 0 1209.6354 O95251 O95251 80 90 KAT7 Histone acetyltransferase KAT7 yes yes 2 1.9482E-06 114.5 1 0.91376 1.1754 NaN 1 Median 0.91376 1.1754 NaN 1 0 Median NaN NaN NaN 0 0 Median 4968800 2728600 2240200 4968800 2728600 2240200 0 0 0 11254 1217 11559 40198 60344;60345 60345 2 SQSAFDLK SLEDALAEAQRVNTKSQSAFDLKKKNLACE AQRVNTKSQSAFDLKKKNLACEESKRKELE K S Q L K K 1 0 0 1 0 1 0 0 0 0 1 1 0 1 0 2 0 0 0 0 0 0 8 0 894.4447 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;Q7Z2X1 A0A024R158 313 320 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 1;2 0.01019 95.741 3 3 0.66325 1.0435 10.272 5 Median 0.76732 1.0019 14.517 2 0 Median 0.66299 1.0611 10.275 3 0 Plateau 293160000 170530000 122620000 187750000 105890000 81858000 105410000 64646000 40765000 11255 50 11560 40199;40200;40201;40202;40203;40204 60346;60347;60348;60349;60350;60351 60347 6 SQSEPSEQDGVLDLSTK LMADQDSPLDLTVRKSQSEPSEQDGVLDLS SEPSEQDGVLDLSTKKSPCAGSTSLSHSPG K S Q T K K 0 0 0 2 0 2 2 1 0 0 2 1 0 0 1 4 1 0 0 1 0 0 17 0 1818.8483 A0A1B0GUH9;A2VCT1;Q96JN0 A0A1B0GUH9 44 60 LCOR Ligand-dependent corepressor yes no 2 1.4675E-09 111.31 2 0.8138 1.044 4.4314 2 Median 0.8138 1.044 4.4314 2 0 Median NaN NaN NaN 0 0 Median 6172300 3376800 2795500 6172300 3376800 2795500 0 0 0 11256 517 11561 40205;40206 60352;60353;60354;60355 60353 4 SQSIDTPGVISR PQVYNDFLDIMKEFKSQSIDTPGVISRVSQ EFKSQSIDTPGVISRVSQLFKGHPDLIMGF K S Q S R V 0 1 0 1 0 1 0 1 0 2 0 0 0 0 1 3 1 0 0 1 0 0 12 0 1258.6517 Q96ST3;H3BP90 Q96ST3 156 167 SIN3A Paired amphipathic helix protein Sin3a yes no 2 0.0024561 79.07 2 0.73417 1.0112 NaN 1 Median 0.73417 1.0112 NaN 1 0 Median NaN NaN NaN 0 0 Median 3895400 1936400 1959000 3895400 1936400 1959000 0 0 0 11257 1701 11562 40207;40208 60356;60357;60358;60359 60359 4 SQSLLTFSTK AYQWLNRSQFYFLTKSQSLLTFSTKSPEEK YFLTKSQSLLTFSTKSPEEKLTPTSKQLLA K S Q T K S 0 0 0 0 0 1 0 0 0 0 2 1 0 1 0 3 2 0 0 0 0 0 10 0 1110.5921 A8K330;Q8IWA0 A8K330 662 671 WDR75 WD repeat-containing protein 75 yes no 2 0.004916 96.143 3 0.88595 1.1215 5.6178 3 Plateau 0.88595 1.1215 5.6178 3 0 Plateau NaN NaN NaN 0 0 Median 33740000 16862000 16878000 33740000 16862000 16878000 0 0 0 11258 588 11563 40209;40210;40211 60360;60361;60362;60363 60361 4 SQSSIVPEEEQAANKGEEK RQEEREKEAAEQAERSQSSIVPEEEQAANK IVPEEEQAANKGEEKKDDENIPMETEETHL R S Q E K K 2 0 1 0 0 2 5 1 0 1 0 2 0 0 1 3 0 0 0 1 0 0 19 1 2058.9706 B4DGM3;A0A024R1S7;Q969G3;K7EMQ8;H7C048 B4DGM3 296 314 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 3 7.8848E-05 86.179 3 2 1.0553 1.6737 50.521 3 Plateau 0.55472 0.68094 NaN 1 0 Median 1.0208 1.6318 3.5857 2 0 Median 59402000 35034000 24369000 21268000 16429000 4838900 38134000 18605000 19530000 11259 66 11564 40212;40213;40214;40215;40216 60364;60365;60366;60367;60368;60369 60368 6 SQVAELNDDDKDDEIVFK GPTPVCTPTFLERRKSQVAELNDDDKDDEI AELNDDDKDDEIVFKQPISCVKEEIQETQT K S Q F K Q 1 0 1 5 0 1 2 0 0 1 1 2 0 1 0 1 0 0 0 2 0 0 18 1 2078.9644 Q9BYG3;C9J808;H7BZL0 Q9BYG3 247 264 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2;3 1.7046E-23 137.45 8 4 0.98977 1.2444 9.3231 10 Median 1.0108 1.2309 10.513 8 0 Median 0.78638 1.2732 2.169 2 0 Median 803130000 408850000 394290000 547740000 277310000 270430000 255390000 131530000 123860000 11260 1726 11565 40217;40218;40219;40220;40221;40222;40223;40224;40225;40226;40227;40228 60370;60371;60372;60373;60374;60375;60376;60377;60378;60379;60380;60381;60382;60383;60384;60385;60386;60387;60388 60380 19 SQVEEELFSVR LQRLKAEATEAARQRSQVEEELFSVRVQME ARQRSQVEEELFSVRVQMEELSKLKARIEA R S Q V R V 0 1 0 0 0 1 3 0 0 0 1 0 0 1 0 2 0 0 0 2 0 0 11 0 1321.6514 Q15149 Q15149 2361 2371 PLEC Plectin yes yes 2 1.1643E-05 102.53 4 0.7607 1.0229 17.304 2 Median 0.7607 1.0229 17.304 2 0 Median NaN NaN NaN 0 0 Median 44465000 27083000 17381000 44465000 27083000 17381000 0 0 0 11261 1507 11566 40229;40230;40231;40232 60389;60390;60391;60392;60393;60394;60395 60395 7 SQVEQQQLITVEK EGKEMCVLRMTRARRSQVEQQQLITVEKAL RRSQVEQQQLITVEKALAILSQPTPSLVVD R S Q E K A 0 0 0 0 0 4 2 0 0 1 1 1 0 0 0 1 1 0 0 2 0 0 13 0 1528.8097 A0A024R9G7;Q6PL18;A0A0B4J211 A0A024R9G7 1302 1314 ATAD2 ATPase family AAA domain-containing protein 2 yes no 2 4.07E-07 145.14 2 0.97405 1.2488 NaN 1 Median 0.97405 1.2488 NaN 1 0 Median NaN NaN NaN 0 0 Median 4663200 1846500 2816700 4663200 1846500 2816700 0 0 0 11262 221 11567 40233;40234 60396;60397;60398;60399 60396 4 SQVFSTAADGQTQVEIK FTKLINRNTTIPTKKSQVFSTAADGQTQVE VFSTAADGQTQVEIKVCQGEREMAGDNKLL K S Q I K V 2 0 0 1 0 3 1 1 0 1 0 1 0 1 0 2 2 0 0 2 0 0 17 0 1807.8952 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;B7Z4T3;A1XP52 B7Z4V2 455 471 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 1.3789E-50 267.77 4 3 0.45927 0.57742 127.44 6 Median 0.4526 0.56339 2.6933 4 0 Median 4.4035 6.6524 4.0851 2 0 Median 111660000 60275000 51388000 78055000 52411000 25644000 33608000 7864500 25744000 11263 910 11568 40235;40236;40237;40238;40239;40240;40241 60400;60401;60402;60403;60404;60405;60406;60407;60408;60409;60410;60411;60412;60413;60414 60400 15 SQVLFHQLVPLQVK ______________________________ MSQVLFHQLVPLQVKCKDCEERRVSIRMSI M S Q V K C 0 0 0 0 0 3 0 0 1 0 3 1 0 1 1 1 0 0 0 3 0 0 14 0 1634.9508 Q6UVJ0 Q6UVJ0 2 15 SASS6 Spindle assembly abnormal protein 6 homolog yes yes 2 0.00017296 113.38 2 0.45493 0.57498 NaN 1 Median 0.45493 0.57498 NaN 1 0 Median NaN NaN NaN 0 0 Median 2876700 2328000 548750 2876700 2328000 548750 0 0 0 11264 1601 11569 40242;40243 60415;60416 60416 2 SQVMDEATALQLR FRGLRKQITMEELVRSQVMDEATALQLREG VRSQVMDEATALQLREGLTSIEEVTKNLQK R S Q L R E 2 1 0 1 0 2 1 0 0 0 2 0 1 0 0 1 1 0 0 1 0 0 13 0 1460.7293 Q15149;D3DWL0;Q96IE3 Q15149 4037 4049 PLEC;PLEC1 Plectin yes no 2 2.1998E-05 78.653 1 2 1.4966 2.1626 0.98671 2 Median NaN NaN NaN 0 0 Median 1.4966 2.1626 0.98671 2 0 Median 15754000 5272800 10482000 0 0 0 15754000 5272800 10482000 11265 1507 11570;11571 40244;40245;40246 60417;60418;60419;60420 60417 690 4 SQYEQLAEQNR AAPGVDLTQLLNNMRSQYEQLAEQNRKDAE NNMRSQYEQLAEQNRKDAEAWFNEKSKELT R S Q N R K 1 1 1 0 0 3 2 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 11 0 1364.6321 CON__P13645;P13645 CON__P13645 323 333 KRT10 Keratin, type I cytoskeletal 10 yes no 2 1.7967E-69 234.2 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24544000 24544000 0 24544000 24544000 0 0 0 0 + 11266 960 11572 40247;40248;40249 60421;60422;60423;60424 60422 4 SQYEQLAEQNRK AAPGVDLTQLLNNMRSQYEQLAEQNRKDAE NMRSQYEQLAEQNRKDAEAWFNEKSKELTT R S Q R K D 1 1 1 0 0 3 2 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 12 1 1492.727 CON__P13645;P13645 CON__P13645 323 334 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 3.757E-72 251.87 6 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1252200000 1252200000 0 721710000 721710000 0 530520000 530520000 0 + 11267 960 11573 40250;40251;40252;40253;40254;40255;40256;40257;40258;40259 60425;60426;60427;60428;60429;60430;60431;60432;60433;60434 60427 10 SRAEAALEEESR AYHNSPAYLAYINAKSRAEAALEEESRQRQ NAKSRAEAALEEESRQRQSRMEKGEPYMSI K S R S R Q 3 2 0 0 0 0 4 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 12 1 1346.6426 B4DGM3;A0A024R1S7;Q969G3;J3QKS7;J3KT85;J3QR61;C0IMW8 B4DGM3 129 140 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 2;3 0.0009165 139.76 5 2 0.61059 1.5268 35.821 7 Linear 0.56579 0.76776 7.8203 5 0 Median 1.0837 1.5981 7.5957 2 0 Median 48123000 26187000 21936000 22361000 13975000 8386700 25762000 12212000 13549000 11268 66 11574 40260;40261;40262;40263;40264;40265;40266 60435;60436;60437;60438;60439;60440;60441;60442 60439 8 SRAEAESMYQIK IIAEVKAQYEDIANRSRAEAESMYQIKYEE ANRSRAEAESMYQIKYEELQSLAGKHGDDL R S R I K Y 2 1 0 0 0 1 2 0 0 1 0 1 1 0 0 2 0 0 1 0 0 0 12 1 1411.6766 CON__P05787;P05787;Q969I0;Q7L4M3 CON__P05787 274 285 KRT8 Keratin, type II cytoskeletal 8 yes no 2 0.0081491 96.067 2 0.20729 0.27328 3.6283 2 Median 0.20729 0.27328 3.6283 2 0 Median NaN NaN NaN 0 0 Median 14317000 12287000 2029900 14317000 12287000 2029900 0 0 0 + 11269 955 11575 40267;40268 60443;60444 60444 2 SRAEAESWYQTK IIAEVKAQYEEIAQRSRAEAESWYQTKYEE AQRSRAEAESWYQTKYEELQVTAGRHGDDL R S R T K Y 2 1 0 0 0 1 2 0 0 0 0 1 0 0 0 2 1 1 1 0 0 0 12 1 1454.679 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;B4DRY0;CON__P04259;B4DKV4;CON__O95678;O95678 B4DRR0 319 330 KRT6A;KRT6C;KRT75 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 75 no no 3 0.0020353 40.066 2 0.19074 0.24885 16.478 2 Median 0.19074 0.24885 16.478 2 0 Median NaN NaN NaN 0 0 Median 37678000 31614000 6063300 37678000 31614000 6063300 0 0 0 + 11270 459;953;946 11576 40269;40270 60445;60446 60445 2 SRAGTLLPVIQFLQK LWTHKLLMLHGQKLKSRAGTLLPVIQFLQK SRAGTLLPVIQFLQKSIQRHLDDLSKLCSW K S R Q K S 1 1 0 0 0 2 0 1 0 1 3 1 0 1 1 1 1 0 0 1 0 0 15 1 1669.9879 Q15269;A0A0B4J2E5;A0A096LPI6 Q15269 836 850 PWP2 Periodic tryptophan protein 2 homolog yes no 3 0.00056257 44.44 1 1.0605 1.3667 NaN 1 Median 1.0605 1.3667 NaN 1 0 Median NaN NaN NaN 0 0 Median 5091500 2885800 2205600 5091500 2885800 2205600 0 0 0 11271 1508 11577 40271 60447 60447 1 SRDPIIFSVGWR QMRLKKHRWYKKILKSRDPIIFSVGWRRFQ ILKSRDPIIFSVGWRRFQTIPLYYIEDHNG K S R W R R 0 2 0 1 0 0 0 1 0 2 0 0 0 1 1 2 0 1 0 1 0 0 12 1 1431.7623 Q14692 Q14692 938 949 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 0.0059688 33.685 2 0.6971 0.93443 10.097 2 Median NaN NaN NaN 0 0 Median 0.6971 0.93443 10.097 2 0 Median 11000000 5460300 5539700 0 0 0 11000000 5460300 5539700 11272 1495 11578 40272;40273 60448;60449 60449 2 SRDPLLSQR EASSTEKPTKALPRKSRDPLLSQR______ KALPRKSRDPLLSQR_______________ K S R Q R - 0 2 0 1 0 1 0 0 0 0 2 0 0 0 1 2 0 0 0 0 0 0 9 1 1070.5833 B4DGP7;V9GYY5;B3KQ09;A0A024R1M6;Q9UGY1 B4DGP7 152 160 MGC3731;NOL12 Nucleolar protein 12 yes no 2 0.024257 69.275 1 0.66279 1.0168 NaN 1 Median NaN NaN NaN 0 0 Median 0.66279 1.0168 NaN 1 0 Median 19007000 11657000 7349500 0 0 0 19007000 11657000 7349500 11273 60 11579 40274 60450 60450 1 SREAIDSPVSFLALHNQIR KIHQTGLKVVRLCAKSREAIDSPVSFLALH IDSPVSFLALHNQIRNMDSMPELQKLQQLK K S R I R N 2 2 1 1 0 1 1 0 1 2 2 0 0 1 1 3 0 0 0 1 0 0 19 1 2152.1389 A0A024R7L5;A0A024R7L8;Q92900 A0A024R7L5 548 566 UPF1 Regulator of nonsense transcripts 1 yes no 3 0.027085 41.367 2 0.44057 0.59088 26.299 2 Median 0.44057 0.59088 26.299 2 0 Median NaN NaN NaN 0 0 Median 14152000 10459000 3693400 14152000 10459000 3693400 0 0 0 11274 180 11580 40275;40276 60451;60452;60453 60452 3 SREDAGDNDDTEGAIGVR FARMELREHGEKKKRSREDAGDNDDTEGAI DAGDNDDTEGAIGVRNKVAGGKMKKRKGR_ R S R V R N 2 2 1 4 0 0 2 3 0 1 0 0 0 0 0 1 1 0 0 1 0 0 18 1 1875.8195 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;Q7Z4B1 Q53GJ1 417 434 hCG_27698;DDX47;E4-DBP;MST162 Probable ATP-dependent RNA helicase DDX47 yes no 2;3 1.4638E-31 171.08 8 1 0.95649 1.3024 13.623 4 Median 0.95649 1.3024 13.623 4 0 Median NaN NaN NaN 0 0 Median 113420000 57879000 55541000 111050000 55510000 55541000 2369600 2369600 0 11275 249 11581 40277;40278;40279;40280;40281;40282;40283;40284;40285 60454;60455;60456;60457;60458;60459;60460;60461;60462;60463;60464 60455 11 SREIFLSQPILLELEAPLK NVQLTENEIRGLCLKSREIFLSQPILLELE FLSQPILLELEAPLKICGDIHGQYYDLLRL K S R L K I 1 1 0 0 0 1 3 0 0 2 5 1 0 1 2 2 0 0 0 0 0 0 19 1 2195.2566 A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;A0A087WYY5;F8WE71;P62136;A0A140VJS9;B3KXM2;E9PMD7;F5H1L6;F5H037;V9HW04;P62140;B4DJ75;B7ZB67;E7ETD8;C9J9S3;C9JP48;B4E163 V9HW04 42 60 PPP1CC;PPP1CB;PPP1CA;HEL-S-80p Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 2;3 3.2135E-41 153.06 7 0.95556 1.2658 24.645 6 Median 0.95556 1.2658 24.645 6 0 Median NaN NaN NaN 0 0 Median 805290000 404500000 400790000 805290000 404500000 400790000 0 0 0 11276 1396;1397;279 11582 40286;40287;40288;40289;40290;40291;40292 60465;60466;60467;60468;60469;60470;60471;60472;60473;60474;60475;60476;60477;60478;60479;60480;60481 60477 17 SREQSSEAAETGVSENEENPVR NINVNSELNPSTGNRSREQSSEAAETGVSE AAETGVSENEENPVRIISVTPVKNIDPVKN R S R V R I 2 2 2 0 0 1 6 1 0 0 0 0 0 0 1 4 1 0 0 2 0 0 22 1 2404.0739 G1UI16;Q29RF7;B3KMN2;Q96DB6 G1UI16 1182 1203 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 3 2.0746E-08 96.591 3 0.48439 0.61452 NaN 1 Median 0.48439 0.61452 NaN 1 0 Median NaN NaN NaN 0 0 Median 9096000 6924600 2171400 9096000 6924600 2171400 0 0 0 11277 1076 11583 40293;40294;40295 60482;60483;60484 60483 3 SRFDRPPAR GSRVRVELSTGMPRRSRFDRPPARRPFDPN TGMPRRSRFDRPPARRPFDPNDRCYECGEK R S R A R R 1 3 0 1 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 0 0 0 9 2 1100.5839 A0A0B4J1Z1;B4DEK2;C9JAB2;Q16629;Q8NB80;F8WEA1 A0A0B4J1Z1 89 97 SRSF7 Serine/arginine-rich splicing factor 7 yes no 3 0.0011803 79.148 1 0.42506 0.53722 NaN 1 Median 0.42506 0.53722 NaN 1 0 Median NaN NaN NaN 0 0 Median 69895000 51122000 18773000 69895000 51122000 18773000 0 0 0 11278 414 11584 40296 60485 60485 1 SRGGGEGNVDETGNNPSVSLK GSDNDVEVIKVWNSRSRGGGEGNVDETGNN GNVDETGNNPSVSLKLEESKATSSSNPSSP R S R L K L 0 1 3 1 0 0 2 5 0 0 1 1 0 0 1 3 1 0 0 2 0 0 21 1 2072.9723 A4LAA3;P46100;B4DHH8;B4DLE1;A0A096LNX6 A4LAA3 1962 1982 ATRX Transcriptional regulator ATRX yes no 3 5.3767E-27 152.09 4 1 0.59607 0.78025 19.818 4 Median 0.58548 0.78819 3.0547 3 0 Plateau 0.73031 1.137 NaN 1 0 Median 40569000 25089000 15479000 33090000 19936000 13154000 7478900 5153300 2325700 11279 556 11585 40297;40298;40299;40300;40301 60486;60487;60488;60489;60490;60491;60492;60493;60494;60495 60487 10 SRLDQELK VCRKTYVTPRRPFEKSRLDQELKLIGEYGL PRRPFEKSRLDQELKLIGEYGLRNKREVWR K S R L K L 0 1 0 1 0 1 1 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 8 1 987.53491 A0A024R4M0;P46781;B5MCT8;C9JM19;B7Z732;F2Z3C0;A8MXK4 A0A024R4M0 23 30 RPS9 40S ribosomal protein S9 yes no 2 0.00010348 138.4 4 2 0.74165 0.98168 8.1263 6 Median 0.74443 0.98636 1.3156 4 0 Median 0.50289 0.88213 12.145 2 0 Median 2205000000 1286400000 918660000 1841300000 1048200000 793140000 363730000 238210000 125520000 11280 124 11586 40302;40303;40304;40305;40306;40307 60496;60497;60498;60499;60500;60501;60502;60503;60504 60499 9 SRLEVAEAEEEETSIK IDKSRKLPHSKAKTRSRLEVAEAEEEETSI RLEVAEAEEEETSIKAARSELLLAEEPGFL R S R I K A 2 1 0 0 0 0 6 0 0 1 1 1 0 0 0 2 1 0 0 1 0 0 16 1 1818.8847 B0UZZ8;B4DNI0;O15213;B4DP15;A8K806;A0A140T9L0;A0A0G2JJL1;H0Y6G3 B0UZZ8 130 145 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2;3 1.6265E-18 155.2 8 3 0.91478 1.2377 5.4347 10 Median 0.95921 1.2465 6.2456 7 0 Median 0.69983 1.2108 3.2222 3 0 Median 229020000 122830000 106190000 143350000 72237000 71113000 85674000 50595000 35079000 11281 668 11587 40308;40309;40310;40311;40312;40313;40314;40315;40316;40317;40318 60505;60506;60507;60508;60509;60510;60511;60512;60513;60514;60515;60516;60517;60518;60519;60520;60521;60522;60523;60524;60525 60510 21 SRLGDLYEEEMR KILLAELEQLKGQGKSRLGDLYEEEMRELR QGKSRLGDLYEEEMRELRRQVDQLTNDKAR K S R M R E 0 2 0 1 0 0 3 1 0 0 2 0 1 0 0 1 0 0 1 0 0 0 12 1 1496.6929 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;A0A1B0GUA0 V9HWE1 144 155 HEL113;VIM Vimentin yes no 3 0.037821 25.448 1 0.85519 1.1392 NaN 1 Median 0.85519 1.1392 NaN 1 0 Median NaN NaN NaN 0 0 Median 11847000 6438200 5408800 11847000 6438200 5408800 0 0 0 11282 1245 11588 40319 60526 60526 1 SRNITYLPAGQSVLLQLPQ RKLEAAEDIAYQLSRSRNITYLPAGQSVLL TYLPAGQSVLLQLPQ_______________ R S R P Q - 1 1 1 0 0 3 0 1 0 1 4 0 0 0 2 2 1 0 1 1 0 0 19 1 2097.1582 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0 Q6PUJ7 254 272 HEL-S-54e;PHB Prohibitin yes no 2 0.0081469 69.92 1 0.69389 0.95637 NaN 1 Median 0.69389 0.95637 NaN 1 0 Median NaN NaN NaN 0 0 Median 1194300 668800 525450 1194300 668800 525450 0 0 0 11283 600 11589 40320 60527 60527 1 SRPAPSPESIK GLARVADNAQQQYVRSRPAPSPESIKRAKE QYVRSRPAPSPESIKRAKEMDLVGLGLHPL R S R I K R 1 1 0 0 0 0 1 0 0 1 0 1 0 0 3 3 0 0 0 0 0 0 11 1 1167.6248 Q8TDD1 Q8TDD1 522 532 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 9.8299E-08 127.76 3 2 0.7542 1.0626 6.6493 5 Median 0.79904 1.0626 9.0857 3 0 Median 0.62747 1.0551 3.0418 2 0 Median 89896000 55300000 34596000 41219000 24038000 17181000 48677000 31262000 17415000 11284 1658 11590 40321;40322;40323;40324;40325 60528;60529;60530;60531;60532;60533;60534 60529 7 SRPAPSPESIKR GLARVADNAQQQYVRSRPAPSPESIKRAKE YVRSRPAPSPESIKRAKEMDLVGLGLHPLF R S R K R A 1 2 0 0 0 0 1 0 0 1 0 1 0 0 3 3 0 0 0 0 0 0 12 2 1323.7259 Q8TDD1 Q8TDD1 522 533 DDX54 ATP-dependent RNA helicase DDX54 yes yes 3 1.9293E-07 141.34 2 0.83484 1.0131 7.7231 2 Median 0.83484 1.0131 7.7231 2 0 Median NaN NaN NaN 0 0 Median 22217000 10771000 11446000 22217000 10771000 11446000 0 0 0 11285 1658 11591 40326;40327 60535;60536 60535 2 SRPELLEYYIK STSLKAKVLETFLAKSRPELLEYYIKVILD FLAKSRPELLEYYIKVILDYNTAHNKVALS K S R I K V 0 1 0 0 0 0 2 0 0 1 2 1 0 0 1 1 0 0 2 0 0 0 11 1 1409.7555 Q14258 Q14258 448 458 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 no no 2 0.02728 52.79 1 0.5443 0.7076 NaN 1 Median 0.5443 0.7076 NaN 1 0 Median NaN NaN NaN 0 0 Median 10683000 6501100 4182000 10683000 6501100 4182000 0 0 0 11286 1485 11592 40328 60537 60537 1 SRPFTVAASFQSTSVK LDLKKLRRSSSLKERSRPFTVAASFQSTSV RPFTVAASFQSTSVKSPKTVSPPIRKGWSM R S R V K S 2 1 0 0 0 1 0 0 0 0 0 1 0 2 1 4 2 0 0 2 0 0 16 1 1711.8893 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2 F8VQE1 427 442 LIMA1 LIM domain and actin-binding protein 1 yes no 2;3 7.7804E-30 174.47 8 2 0.67675 0.89675 38.996 10 Median 0.6635 0.87929 6.0731 8 0 Median 1.3448 2.2574 2.6726 2 0 Median 616410000 350060000 266350000 571950000 331000000 240950000 44468000 19065000 25404000 11287 834 11593 40329;40330;40331;40332;40333;40334;40335;40336;40337;40338 60538;60539;60540;60541;60542;60543;60544;60545;60546;60547;60548;60549;60550;60551;60552;60553;60554 60552 17 SRPLATGPSSQSHQEK ESLNSCRPSDASATRSRPLATGPSSQSHQE RPLATGPSSQSHQEKTTDSGLTEGIWQLVP R S R E K T 1 1 0 0 0 2 1 1 1 0 1 1 0 0 2 4 1 0 0 0 0 0 16 1 1708.8493 A0A024R7R0;Q96RL1;D6RC40;D6RCQ3 A0A024R7R0 131 146 RAP80;UIMC1 BRCA1-A complex subunit RAP80 yes no 3 1.4441E-09 125.39 1 1 0.75516 1.0153 25.731 2 Median 0.64942 0.84642 NaN 1 0 Median 0.87811 1.2179 NaN 1 0 Median 2814000 1497700 1316300 1193300 693890 499450 1620600 803760 816860 11288 183 11594 40339;40340 60555;60556;60557 60556 3 SRPTSEGSDIESTEPQK ENMDTSNTSISKMKRSRPTSEGSDIESTEP PTSEGSDIESTEPQKQCSKKKKKRDRVEAS R S R Q K Q 0 1 0 1 0 1 3 1 0 1 0 1 0 0 2 4 2 0 0 0 0 0 17 1 1846.8545 Q4G0J3;D6RFF0;H0YA82 Q4G0J3 254 270 LARP7 La-related protein 7 yes no 3 0.0028991 20.251 1 0.53989 0.73054 NaN 1 Median NaN NaN NaN 0 0 Median 0.53989 0.73054 NaN 1 0 Median 868720 491890 376830 0 0 0 868720 491890 376830 11289 1534 11595 40341 60558 60558 1 SRQELEQHSVDTASTSDAVTFITYVQSLK MLGSNMTEFHSQISKSRQELEQHSVDTAST TSDAVTFITYVQSLKRKIKQFEKQVELYRN K S R L K R 2 1 0 2 0 3 2 0 1 1 2 1 0 1 0 5 4 0 1 3 0 0 29 1 3239.5946 Q14204 Q14204 1149 1177 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 4 0.028773 30.734 1 0.54164 0.72506 NaN 1 Median 0.54164 0.72506 NaN 1 0 Median NaN NaN NaN 0 0 Median 2786200 1964900 821340 2786200 1964900 821340 0 0 0 11290 1483 11596 40342 60559 60559 1 SRSTTELDDYSTNK TEEASSGFLPGDRNKSRSTTELDDYSTNKN KSRSTTELDDYSTNKNGNNKYLDQIGNMTS K S R N K N 0 1 1 2 0 0 1 0 0 0 1 1 0 0 0 3 3 0 1 0 0 0 14 1 1615.7326 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;E9PMT2;A0A0A0MTE2 A0A1P7ZIM8 1035 1048 LMO7 LIM domain only protein 7 yes no 2 1.6109E-07 138.2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 364250 364250 0 364250 364250 0 0 0 0 11291 525 11597 40343 60560 60560 1 SRVTQSNFAVGYK EGWLAGYQMNFETAKSRVTQSNFAVGYKTD AKSRVTQSNFAVGYKTDEFQLHTNVNDGTE K S R Y K T 1 1 1 0 0 1 0 1 0 0 0 1 0 1 0 2 1 0 1 2 0 0 13 1 1455.747 A0A1L1UHR1;P21796;B4DEI3;C9JI87 A0A1L1UHR1 162 174 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2;3 8.8169E-08 114.24 7 0.6533 0.86508 8.2734 7 Median 0.6533 0.86508 8.2734 7 0 Median NaN NaN NaN 0 0 Median 222380000 133160000 89219000 222380000 133160000 89219000 0 0 0 11292 524 11598 40344;40345;40346;40347;40348;40349;40350 60561;60562;60563;60564;60565;60566;60567;60568;60569;60570;60571;60572;60573 60569 13 SSAAEPPPPPPPESAPSK ______________________________ AEPPPPPPPESAPSKPAASIASGGSNSSNK M S S S K P 3 0 0 0 0 0 2 0 0 0 0 1 0 0 8 4 0 0 0 0 0 0 18 0 1741.8523 O60264;Q4W5G3 O60264 2 19 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 0.0008012 80.371 3 2.2218 2.8338 10.753 2 Median 2.2218 2.8338 10.753 2 0 Median NaN NaN NaN 0 0 Median 13100000 6137700 6962400 13100000 6137700 6962400 0 0 0 11293 1189 11599 40351;40352;40353 60574;60575;60576;60577;60578 60578 5 SSAEMIENTNSLGK KSAKITPCALCKSLRSSAEMIENTNSLGKT RSSAEMIENTNSLGKTELFCSVNCLSAYRV R S S G K T 1 0 2 0 0 0 2 1 0 1 1 1 1 0 0 3 1 0 0 0 0 0 14 0 1479.6875 Q5VZL5 Q5VZL5 539 552 ZMYM4 Zinc finger MYM-type protein 4 yes yes 2 5.3985E-05 69.815 3 1.1955 1.6033 5.2385 3 Median NaN NaN NaN 0 0 Median 1.1955 1.6033 5.2385 3 0 Median 8280300 3424600 4855700 0 0 0 8280300 3424600 4855700 11294 1580 11600 40354;40355;40356 60579;60580;60581 60579 719 3 SSALREEVQSLREEAEK LQAETASNSARAAERSSALREEVQSLREEA ALREEVQSLREEAEKQRVASENLRQELTSQ R S S E K Q 2 2 0 0 0 1 5 0 0 0 2 1 0 0 0 3 0 0 0 1 0 0 17 2 1959.9861 A0A024R5M9;A0A024R5G4;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1287 1303 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 0.00017247 94.339 2 0.73764 0.89717 3.5061 2 Median 0.73764 0.89717 3.5061 2 0 Median NaN NaN NaN 0 0 Median 68458000 39869000 28588000 68458000 39869000 28588000 0 0 0 11295 148;1499 11601 40357;40358 60582;60583;60584 60583 3 SSAQDPQAVLGALGR IPAACGATLPALGLRSSAQDPQAVLGALGR SSAQDPQAVLGALGRALSPLEEWLRLHTYL R S S G R A 3 1 0 1 0 2 0 2 0 0 2 0 0 0 1 2 0 0 0 1 0 0 15 0 1468.7634 A0A024RCN6;P26640;A0A140T936;A0A140T954;A2ABF4;A0A0G2JJT9;A0A140T904 A0A024RCN6 123 137 VARS Valine--tRNA ligase yes no 2 0.00085423 109.15 3 0.54445 0.74856 NaN 1 Median 0.54445 0.74856 NaN 1 0 Median NaN NaN NaN 0 0 Median 21674000 19269000 2405000 21674000 19269000 2405000 0 0 0 11296 297 11602 40359;40360;40361 60585;60586;60587 60586 3 SSAQLQTNYPSSDNSLYTNAK EDASKRKFRALEKARSSAQLQTNYPSSDNS TNYPSSDNSLYTNAKGSTISAFDGGSDSSS R S S A K G 2 0 3 1 0 2 0 0 0 0 2 1 0 0 1 5 2 0 2 0 0 0 21 0 2288.0557 G3V302;G3V5L1;Q8TAX8;P61244 G3V302 44 64 MAX Protein max yes no 2 6.6342E-19 133.87 1 1.3857 1.7464 NaN 1 Median 1.3857 1.7464 NaN 1 0 Median NaN NaN NaN 0 0 Median 1130000 349210 780770 1130000 349210 780770 0 0 0 11297 1080 11603 40362 60588 60588 1 SSAVDPEPQVK KSRKTPQKSRNRKNRSSAVDPEPQVKLEDV RKNRSSAVDPEPQVKLEDVLPLAFTRLCEP R S S V K L 1 0 0 1 0 1 1 0 0 0 0 1 0 0 2 2 0 0 0 2 0 0 11 0 1155.5772 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 248 258 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.020935 89.029 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11298 1565 11604 40363;40364 60589;60590 60589 2 SSAVDPEPQVKLEDVLPLAFTR KSRKTPQKSRNRKNRSSAVDPEPQVKLEDV PQVKLEDVLPLAFTRLCEPKEASYSLIRKY R S S T R L 2 1 0 2 0 1 2 0 0 0 3 1 0 1 3 2 1 0 0 3 0 0 22 1 2410.2744 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 248 269 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 3 9.1403E-27 150.65 3 2 0.54246 0.7998 16.845 4 Median 0.68959 0.90641 1.2773 2 0 Median 0.43049 0.68171 6.1739 2 0 Median 82260000 56113000 26147000 56264000 36804000 19461000 25995000 19309000 6686000 11299 1565 11605 40365;40366;40367;40368;40369 60591;60592;60593;60594;60595;60596;60597 60592 7 SSAVQQLLEK ITFVRKNKTLSAAFKSSAVQQLLEKNYRIH SAAFKSSAVQQLLEKNYRIHCSVHNIIIPE K S S E K N 1 0 0 0 0 2 1 0 0 0 2 1 0 0 0 2 0 0 0 1 0 0 10 0 1101.603 A8K9K8;Q9UNQ2;A0A0C4DGB1 A8K9K8 244 253 DIMT1 Probable dimethyladenosine transferase yes no 2 0.0076826 82.645 3 1.1382 1.4625 5.6171 2 Median 1.1382 1.4625 5.6171 2 0 Median NaN NaN NaN 0 0 Median 19480000 6694900 12785000 19480000 6694900 12785000 0 0 0 11300 648 11606 40370;40371;40372 60598;60599;60600 60600 2 SSAVVELDLEGTR KKLTTDGKLIARALRSSAVVELDLEGTRIR LRSSAVVELDLEGTRIRRKKPLGERPKDED R S S T R I 1 1 0 1 0 0 2 1 0 0 2 0 0 0 0 2 1 0 0 2 0 0 13 0 1374.6991 Q4G0J3;D6RFF0;D6RF49;D6RAF3 Q4G0J3 96 108 LARP7 La-related protein 7 yes no 2 0.00023544 70.977 1 0.502 0.68246 NaN 1 Median 0.502 0.68246 NaN 1 0 Median NaN NaN NaN 0 0 Median 9215500 6363500 2852000 9215500 6363500 2852000 0 0 0 11301 1534 11607 40373 60601 60601 1 SSAVVVDAIPVFLEK HACRALTYMMEALPRSSAVVVDAIPVFLEK SSAVVVDAIPVFLEKLQVIQCIDVAEQALT R S S E K L 2 0 0 1 0 0 1 0 0 1 1 1 0 1 1 2 0 0 0 4 0 0 15 0 1572.8763 Q14669 Q14669 515 529 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 2 0.0012858 88.803 1 0.65534 0.80753 NaN 1 Median 0.65534 0.80753 NaN 1 0 Median NaN NaN NaN 0 0 Median 1368800 761090 607750 1368800 761090 607750 0 0 0 11302 1489 11608 40374 60602 60602 1 SSCPLANSQYATIK SFCRNEYSLTGLCNRSSCPLANSQYATIKE RSSCPLANSQYATIKEEKGQCYLYMKVIER R S S I K E 2 0 1 0 1 1 0 0 0 1 1 1 0 0 1 3 1 0 1 0 0 0 14 0 1538.7399 Q9BXY0;H0YBV6;A0PJ56 Q9BXY0 42 55 MAK16 Protein MAK16 homolog yes no 2 5.5044E-10 150.09 4 0.79427 1.0055 8.5182 4 Median 0.79427 1.0055 8.5182 4 0 Median NaN NaN NaN 0 0 Median 76004000 40313000 35691000 76004000 40313000 35691000 0 0 0 11303 1724 11609 40375;40376;40377;40378 60603;60604;60605;60606;60607;60608;60609;60610;60611 60604 9 SSDAFTTQHALR VEQEAQVETSPETSRSSDAFTTQHALRQAQ TSRSSDAFTTQHALRQAQMSKELVELNKAL R S S L R Q 2 1 0 1 0 1 0 0 1 0 1 0 0 1 0 2 2 0 0 0 0 0 12 0 1332.6422 Q59HG1;O95239;Q6PKB2 Q59HG1 510 521 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2;3 1.5114E-33 179.42 6 4 0.66924 0.97019 10.818 10 Median 0.72433 0.98256 13.301 6 0 Median 0.62966 0.94552 6.0064 4 0 Median 267260000 157990000 109270000 179540000 103300000 76236000 87721000 54684000 33037000 11304 1216 11610 40379;40380;40381;40382;40383;40384;40385;40386;40387;40388 60612;60613;60614;60615;60616;60617;60618;60619;60620;60621;60622;60623;60624;60625;60626;60627;60628 60616 17 SSDQPLTVPVSPK HKANPIRKYQGLEIKSSDQPLTVPVSPKFS IKSSDQPLTVPVSPKFSTRFHC________ K S S P K F 0 0 0 1 0 1 0 0 0 0 1 1 0 0 3 3 1 0 0 2 0 0 13 0 1353.714 Q643R0;Q9ULW0;B3KM90;Q96FC3 Q643R0 728 740 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 6.6016E-08 141.89 3 2 0.7239 0.91543 19.134 5 Median 0.78114 0.97585 11.979 3 0 Median 0.46164 0.739 1.9708 2 0 Median 184700000 119210000 65488000 65088000 36435000 28653000 119610000 82774000 36835000 11305 1581 11611 40389;40390;40391;40392;40393 60629;60630;60631;60632;60633;60634;60635;60636 60630 8 SSEEIESAFR EYMAFMISRETENVKSSEEIESAFRALSSE TENVKSSEEIESAFRALSSEGKPYVTKEEL K S S F R A 1 1 0 0 0 0 3 0 0 1 0 0 0 1 0 3 0 0 0 0 0 0 10 0 1153.5251 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;A0A0D9SFH4 Q13813 2405 2414 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 2.8229E-05 126.24 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6334200 6334200 0 6334200 6334200 0 0 0 0 11306 1476 11612 40394;40395;40396 60637;60638;60639 60638 3 SSEGSAHNVAYPGIPK SSSLKGEKTKVLSSKSSEGSAHNVAYPGIP SEGSAHNVAYPGIPKLAPQVHNTTSRELNV K S S P K L 2 0 1 0 0 0 1 2 1 1 0 1 0 0 2 3 0 0 1 1 0 0 16 0 1612.7845 Q03164 Q03164 2315 2330 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2;3 0.0014207 42.556 2 1.1069 1.4052 NaN 1 Median 1.1069 1.4052 NaN 1 0 Median NaN NaN NaN 0 0 Median 9611700 4717800 4893900 9611700 4717800 4893900 0 0 0 11307 1438 11613 40397;40398 60640;60641 60640 2 SSEIEQAVQSLDR ERAQGVVLKVLTNFKSSEIEQAVQSLDRNG FKSSEIEQAVQSLDRNGVDLLMKYIYKGFE K S S D R N 1 1 0 1 0 2 2 0 0 1 1 0 0 0 0 3 0 0 0 1 0 0 13 0 1460.7107 B3KPC7;A0A024R897;Q9BPX5 B3KPC7 90 102 ARPC5L Actin-related protein 2/3 complex subunit 5;Actin-related protein 2/3 complex subunit 5-like protein yes no 2 0.011329 93.839 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11308 193 11614 40399;40400 60642;60643 60642 2 SSELQAIK RSTAVTTSSAKIKLKSSELQAIKTELTQIK SAKIKLKSSELQAIKTELTQIKSNIDALLS K S S I K T 1 0 0 0 0 1 1 0 0 1 1 1 0 0 0 2 0 0 0 0 0 0 8 0 874.476 A8K4T9;Q53GL6;Q9UKM9;Q5QPL9;Q5QPM0 A8K4T9 168 175 RALY RNA-binding protein Raly yes no 2 0.022203 55.676 1 0.96299 1.3579 NaN 1 Median NaN NaN NaN 0 0 Median 0.96299 1.3579 NaN 1 0 Median 4488700 2399900 2088800 0 0 0 4488700 2399900 2088800 11309 608 11615 40401 60644 60644 1 SSENILTVHEQANVESLK PNFYNNDFDDDFSHRSSENILTVHEQANVE NILTVHEQANVESLKETKQNCKDLDEDANG R S S L K E 1 0 2 0 0 1 3 0 1 1 2 1 0 0 0 3 1 0 0 2 0 0 18 0 1997.0065 Q5QJE6;J3KP30;B7Z854 Q5QJE6 273 290 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2;3 4.9552E-31 165.58 8 2 0.93194 1.1907 9.464 8 Median 0.96087 1.2362 9.8258 6 0 Median 0.71554 1.1416 0.29033 2 0 Median 368140000 185450000 182690000 237230000 112520000 124700000 130910000 72928000 57986000 11310 1561 11616 40402;40403;40404;40405;40406;40407;40408;40409;40410;40411 60645;60646;60647;60648;60649;60650;60651;60652;60653;60654;60655;60656;60657;60658 60647 14 SSENPNEVFR EFFLHLINMVERNCRSSENPNEVFRFLVEE ERNCRSSENPNEVFRFLVEEKIKCLATEKV R S S F R F 0 1 2 0 0 0 2 0 0 0 0 0 0 1 1 2 0 0 0 1 0 0 10 0 1177.5364 A0A140VJZ1;P45974 A0A140VJZ1 453 462 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 0.0051989 74.376 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8244600 0 8244600 0 0 0 8244600 0 8244600 11311 505 11617 40412;40413 60659;60660 60659 2 SSEPVVIMK PASKKQRVAPRARGKSSEPVVIMKRSLRTS PRARGKSSEPVVIMKRSLRTSAKRIEPAEE K S S M K R 0 0 0 0 0 0 1 0 0 1 0 1 1 0 1 2 0 0 0 2 0 0 9 0 988.52632 P46013 P46013 3041 3049 MKI67 Antigen KI-67 yes yes 2 0.00072625 100.45 2 0.92827 1.484 1.6546 2 Median NaN NaN NaN 0 0 Median 0.92827 1.484 1.6546 2 0 Median 101990000 50647000 51344000 0 0 0 101990000 50647000 51344000 11312 1342 11618 40414;40415 60661;60662;60663;60664 60662 581 4 SSEQILATLK ILTGGADKNVVVFDKSSEQILATLKGHTKK VVFDKSSEQILATLKGHTKKVTSVVFHPSQ K S S L K G 1 0 0 0 0 1 1 0 0 1 2 1 0 0 0 2 1 0 0 0 0 0 10 0 1088.6077 Q9UMS4 Q9UMS4 252 261 PRPF19 Pre-mRNA-processing factor 19 yes yes 2 6.4216E-08 137.98 4 2 0.79369 0.99834 34.787 6 Median 0.77084 0.97106 10.267 4 0 Median 1.1893 1.7943 8.2399 2 0 Median 129610000 71831000 57776000 97288000 57135000 40153000 32318000 14695000 17623000 11313 1795 11619 40416;40417;40418;40419;40420;40421 60665;60666;60667;60668;60669;60670;60671;60672;60673 60671 9 SSETLTFK SKKDIINPDKKKSKKSSETLTFKRPEGMHR DKKKSKKSSETLTFKRPEGMHREVYALLYS K S S F K R 0 0 0 0 0 0 1 0 0 0 1 1 0 1 0 2 2 0 0 0 0 0 8 0 911.46001 B4DQG8;Q9NPF5;Q5TG40;Q5TG38;Q5TG39;Q5TG37;B4DTH3;B4DEF2;B4DTU6;Q5TG36;B4DU03 B4DQG8 41 48 DMAP1 DNA methyltransferase 1-associated protein 1 yes no 2 0.030716 51.059 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1663400 1663400 0 0 0 0 1663400 1663400 0 11314 850 11620 40422 60674 60674 1 SSFADISNLLQIEPR FYRRAQAHKALKDYKSSFADISNLLQIEPR SSFADISNLLQIEPRNGPAQKLRQEVKQNL K S S P R N 1 1 1 1 0 1 1 0 0 2 2 0 0 1 1 3 0 0 0 0 0 0 15 0 1688.8733 Q15785;B4DXU3;Q6ZPD0 Q15785 279 293 TOMM34 Mitochondrial import receptor subunit TOM34 yes no 2 4.9622E-05 103.14 3 0.41458 0.5783 18.56 3 Median 0.41458 0.5783 18.56 3 0 Median NaN NaN NaN 0 0 Median 10368000 7384800 2983500 10368000 7384800 2983500 0 0 0 11315 1516 11621 40423;40424;40425 60675;60676;60677 60675 3 SSFANVAAATPAIK AVGKQPAPRNLVPKKSSFANVAAATPAIKK KSSFANVAAATPAIKKPPSGFKGTIPKRPW K S S I K K 5 0 1 0 0 0 0 0 0 1 0 1 0 1 1 2 1 0 0 1 0 0 14 0 1346.7194 Q9BTC0 Q9BTC0 571 584 DIDO1 Death-inducer obliterator 1 yes yes 2 1.1612E-06 130.69 3 2 0.7652 1.0266 12.365 5 Median 0.86793 1.0606 16.393 3 0 Median 0.66866 1.0181 1.1764 2 0 Median 87664000 50163000 37501000 43886000 23430000 20456000 43778000 26733000 17045000 11316 1713 11622 40426;40427;40428;40429;40430 60678;60679;60680;60681;60682;60683;60684 60681 7 SSFFIEPQKPVFPETR ESQKSSRGGSPDLWKSSFFIEPQKPVFPET SFFIEPQKPVFPETRKPGPSGPSESPKAAS K S S T R K 0 1 0 0 0 1 2 0 0 1 0 1 0 3 3 2 1 0 0 1 0 0 16 1 1907.9781 Q96JM3 Q96JM3 482 497 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 3 0.00037831 36.451 1 1.3376 2.0113 NaN 1 Median NaN NaN NaN 0 0 Median 1.3376 2.0113 NaN 1 0 Median 4922400 1827500 3094900 0 0 0 4922400 1827500 3094900 11317 1690 11623 40431 60685 60685 1 SSFSSDPDESEGIPLK PRKIREQEPARRVSRSSFSSDPDESEGIPL SFSSDPDESEGIPLKRRRVSFGGHLRPELF R S S L K R 0 0 0 2 0 0 2 1 0 1 1 1 0 1 2 5 0 0 0 0 0 0 16 0 1693.7683 Q70L73 Q70L73 62 77 MKI67 yes yes 2 6.5885E-18 143.42 4 0.93405 1.1461 3.2733 4 Median 0.93405 1.1461 3.2733 4 0 Median NaN NaN NaN 0 0 Median 141720000 74863000 66861000 141720000 74863000 66861000 0 0 0 11318 1604 11624 40432;40433;40434;40435 60686;60687;60688;60689;60690;60691;60692;60693 60691 8 SSFSSDPDESEGIPLKR PRKIREQEPARRVSRSSFSSDPDESEGIPL FSSDPDESEGIPLKRRRVSFGGHLRPELFD R S S K R R 0 1 0 2 0 0 2 1 0 1 1 1 0 1 2 5 0 0 0 0 0 0 17 1 1849.8694 Q70L73 Q70L73 62 78 MKI67 yes yes 3 0.0016812 64.565 2 0.65552 0.89525 NaN 1 Median 0.65552 0.89525 NaN 1 0 Median NaN NaN NaN 0 0 Median 2920200 1961600 958580 2920200 1961600 958580 0 0 0 11319 1604 11625 40436;40437 60694;60695 60694 2 SSFYPDGGDQETAK TIAPQNAPRDESRGRSSFYPDGGDQETAKT RSSFYPDGGDQETAKTGKFLKRFTDEESRV R S S A K T 1 0 0 2 0 1 1 2 0 0 0 1 0 1 1 2 1 0 1 0 0 0 14 0 1500.6369 Q6DCA8;E9PK09;E9PQN2;E9PKI6;E9PK91;Q9NYF8;E9PJA7;H0YF00 Q6DCA8 319 332 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2 1.2595E-05 119.03 4 0.60435 0.75713 9.9673 4 Median 0.60435 0.75713 9.9673 4 0 Median NaN NaN NaN 0 0 Median 68267000 41654000 26612000 68267000 41654000 26612000 0 0 0 11320 1036 11626 40438;40439;40440;40441 60696;60697;60698;60699;60700;60701;60702 60696 7 SSGASVTTQPTEFK PAEVDPDTILKALFKSSGASVTTQPTEFKI KSSGASVTTQPTEFKIKL____________ K S S F K I 1 0 0 0 0 1 1 1 0 0 0 1 0 1 1 3 3 0 0 1 0 0 14 0 1438.694 Q96DI9;F6VRR5;B4E0L0;Q9BY77 Q96DI9 401 414 POLDIP3 Polymerase delta-interacting protein 3 yes no 2 6.1673E-27 181.4 4 2 0.74942 1.04 33.458 4 Median 1.0843 1.3789 2.704 2 0 Median 0.5187 0.7743 4.5293 2 0 Median 33318000 19067000 14252000 15956000 7540200 8415600 17362000 11526000 5835900 11321 885 11627 40442;40443;40444;40445;40446;40447 60703;60704;60705;60706;60707;60708;60709;60710;60711;60712;60713 60705 11 SSGEIVYCGQVFEK SRFWYFVSQLKKMKKSSGEIVYCGQVFEKS KSSGEIVYCGQVFEKSPLRVKNFGIWLRYD K S S E K S 0 0 0 0 1 1 2 2 0 1 0 1 0 1 0 2 0 0 1 2 0 0 14 0 1601.7396 Q02543;M0R3D6;M0R1A7;B2R4C0;M0R0P7;B4DM94;M0R117;B4DM74;B4DUV3;Q53HD3 Q02543 57 70 RPL18A 60S ribosomal protein L18a yes no 2 3.008E-22 202 4 1 0.73867 0.98098 11.498 4 Median 0.73986 0.98202 0.37076 3 0 Median 0.4998 0.78111 NaN 1 0 Median 1351800000 785760000 566000000 1258600000 723540000 535040000 93175000 62217000 30957000 11322 1436 11628 40448;40449;40450;40451;40452 60714;60715;60716;60717;60718;60719;60720;60721;60722;60723 60718 10 SSGPTSLFAVTVAPPGAR QPQQQRGAAKEAAGKSSGPTSLFAVTVAPP PTSLFAVTVAPPGARQGQQQAGGKKKAEGG K S S A R Q 3 1 0 0 0 0 0 2 0 0 1 0 0 1 3 3 2 0 0 2 0 0 18 0 1713.905 Q96BA7;B3KX72;B4DLR3;Q00839 Q96BA7 84 101 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2 6.165E-40 208.82 4 2 0.40517 0.55907 104.14 6 Median 0.39388 0.54247 5.0051 4 0 Median 2.4595 4.0415 6.7161 2 0 Median 779670000 428440000 351240000 484940000 347870000 137070000 294740000 80565000 214170000 11323 788 11629 40453;40454;40455;40456;40457;40458 60724;60725;60726;60727;60728;60729;60730;60731;60732;60733;60734;60735 60725 12 SSGPYGGGGQYFAK SSNFGPMKGGNFGGRSSGPYGGGGQYFAKP RSSGPYGGGGQYFAKPRNQGGYGGSSSSSS R S S A K P 1 0 0 0 0 1 0 5 0 0 0 1 0 1 1 2 0 0 2 0 0 0 14 0 1374.6204 F8W6I7;A0A024RB53;A0A024RAZ7;P09651;Q0VAC0;Q6IPF2;Q9BSM5;A0A024QZ98;Q32P51;H0YH80;B4DP35;B4E0B5;Q3MI39 F8W6I7 272 285 HNRNPA1;HNRPA1;RP11-78J21.1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2 3.253E-05 91.549 4 2 0.40109 0.49916 97.606 6 Median 0.41124 0.47827 4.8143 4 0 Linear 2.0291 3.2028 3.4961 2 0 Median 162010000 89411000 72601000 98515000 68715000 29799000 63497000 20696000 42801000 11324 253 11630 40459;40460;40461;40462;40463;40464 60736;60737;60738;60739;60740;60741;60742;60743;60744;60745;60746;60747 60740 12 SSGSPYGGGYGSGGGSGGYGSR QSNYGPMKGGSFGGRSSGSPYGGGYGSGGG GGYGSGGGSGGYGSRRF_____________ R S S S R R 0 1 0 0 0 0 0 11 0 0 0 0 0 0 1 6 0 0 3 0 0 0 22 0 1909.7827 B4E3E6;B4DDB6;P51991;Q8NFG3;H7C1J8;B4E036;Q66K53 B4E3E6 300 321 HNRPA3;HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes no 2 6.7873E-39 172.91 3 2 1.011 4.2934 137.34 4 Linear 0.30076 0.40909 21.972 2 0 Median 2.8871 4.3703 1.1119 2 0 Median 58666000 27759000 30908000 25116000 18790000 6326700 33550000 8968900 24581000 11325 793 11631 40465;40466;40467;40468;40469 60748;60749;60750;60751;60752;60753;60754;60755;60756 60750 9 SSGTFLSGLSDCTNVTFSK ETPMEEEAELVLTEKSSGTFLSGLSDCTNV FLSGLSDCTNVTFSKVQRFWESNSAAHKEI K S S S K V 0 0 1 1 1 0 0 2 0 0 2 1 0 2 0 5 3 0 0 1 0 0 19 0 2006.9255 B3KMR5;Q5JTH9;A0A087X1U8 B3KMR5 91 109 RRP12 RRP12-like protein yes no 2 2.9037E-31 173.44 2 0.86669 1.095 9.8302 2 Median 0.86669 1.095 9.8302 2 0 Median NaN NaN NaN 0 0 Median 12297000 6533700 5762900 12297000 6533700 5762900 0 0 0 11326 756 11632 40470;40471 60757;60758 60757 2 SSGVPVDGFYTEEVR VGKTTLIHKASEVLKSSGVPVDGFYTEEVR SSGVPVDGFYTEEVRQGGRRIGFDVVTLSG K S S V R Q 0 1 0 1 0 0 2 2 0 0 0 0 0 1 1 2 1 0 1 3 0 0 15 0 1640.7682 Q5TDE9;Q5TDF0;Q9BSD7 Q5TDE9 28 42 C1orf57;NTPCR Cancer-related nucleoside-triphosphatase yes no 2 0.001713 77.185 3 0.43347 0.60599 NaN 1 Median 0.43347 0.60599 NaN 1 0 Median NaN NaN NaN 0 0 Median 8498200 6292100 2206100 8498200 6292100 2206100 0 0 0 11327 1575 11633 40472;40473;40474 60759;60760;60761;60762;60763 60763 5 SSHYDELLAAEAR GLATVIRYRQDDDQRSSHYDELLAAEARAI QRSSHYDELLAAEARAIKNGKGLHSKKEVP R S S A R A 3 1 0 1 0 0 2 0 1 0 2 0 0 0 0 2 0 0 1 0 0 0 13 0 1460.6896 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B4E299;B3KU67;I6TRR8;H7C597 A0A140VK49 473 485 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2;3 0.00024208 111.52 3 0.40441 0.55333 NaN 1 Median 0.40441 0.55333 NaN 1 0 Median NaN NaN NaN 0 0 Median 20852000 17302000 3549700 20852000 17302000 3549700 0 0 0 11328 508 11634 40475;40476;40477 60764;60765;60766 60765 3 SSIAGLLLK ELARREDVRHYLQGRSSIAGLLLKATNEKL HYLQGRSSIAGLLLKATNEKLSVYAALQRQ R S S L K A 1 0 0 0 0 0 0 1 0 1 3 1 0 0 0 2 0 0 0 0 0 0 9 0 900.56442 Q15149;D3DWL0 Q15149 2833 2841 PLEC;PLEC1 Plectin yes no 2 0.0083957 87.754 4 0.7182 0.90059 7.6207 4 Median 0.7182 0.90059 7.6207 4 0 Median NaN NaN NaN 0 0 Median 73751000 42167000 31585000 73751000 42167000 31585000 0 0 0 11329 1507 11635 40478;40479;40480;40481 60767;60768;60769;60770;60771;60772;60773 60771 7 SSIAGSEDAEPLAPPIK EEREKILSSMGNDDKSSIAGSEDAEPLAPP IAGSEDAEPLAPPIKPIKPVTRNKAPQEPP K S S I K P 3 0 0 1 0 0 2 1 0 2 1 1 0 0 3 3 0 0 0 0 0 0 17 0 1680.857 Q03164;E9PR05;Q9HB80;H7C5W4 Q03164 1114 1130 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 4.654E-07 104.24 4 2 1.1074 1.431 39.404 6 Median 0.95148 1.2103 27.298 4 0 Median 1.4908 2.2349 0.44499 2 0 Median 39937000 19363000 20575000 19783000 10905000 8878200 20154000 8457800 11696000 11330 1438 11636 40482;40483;40484;40485;40486;40487 60774;60775;60776;60777;60778;60779;60780;60781;60782;60783;60784 60778 11 SSIAGSEDAEPLAPPIKPIKPVTR EEREKILSSMGNDDKSSIAGSEDAEPLAPP EPLAPPIKPIKPVTRNKAPQEPPVKKGRRS K S S T R N 3 1 0 1 0 0 2 1 0 3 1 2 0 0 5 3 1 0 0 1 0 0 24 2 2472.3588 Q03164;E9PR05;Q9HB80;H7C5W4 Q03164 1114 1137 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 4 0.0021089 28.145 1 0.93955 1.6381 NaN 1 Median NaN NaN NaN 0 0 Median 0.93955 1.6381 NaN 1 0 Median 10145000 4599300 5545500 0 0 0 10145000 4599300 5545500 11331 1438 11637 40488 60785 60785 1 SSISETLSGTDTFSSSNNHEK EPLQVSFAVLSSPNKSSISETLSGTDTFSS LSGTDTFSSSNNHEKISSPKVGRITRTSNR K S S E K I 0 0 2 1 0 0 2 1 1 1 1 1 0 1 0 7 3 0 0 0 0 0 21 0 2226.9877 E9PEI0;Q69YH5;A8K8Z0;B7Z5Q5 E9PEI0 459 479 CDCA2 Cell division cycle-associated protein 2 yes no 3 4.6538E-26 143.99 4 2 0.73321 0.92405 7.8863 4 Median 0.73321 0.92405 7.8863 4 0 Median NaN NaN NaN 0 0 Median 92019000 60191000 31827000 69824000 37996000 31827000 22195000 22195000 0 11332 1023 11638 40489;40490;40491;40492;40493;40494 60786;60787;60788;60789;60790;60791;60792;60793;60794 60787 9 SSLGQSASETEEDTVSVSK MNSQQEEEEMETDARSSLGQSASETEEDTV QSASETEEDTVSVSKKEKNRKRRNRKKKKK R S S S K K 1 0 0 1 0 1 3 1 0 0 1 1 0 0 0 6 2 0 0 2 0 0 19 0 1939.8858 Q13435;Q7Z3K9;E9PPJ0;E9PJ04;H0YCG1 Q13435 302 320 SF3B2;DKFZp781L0540 Splicing factor 3B subunit 2 yes no 2 0.035347 25.322 1 0.40161 0.51952 NaN 1 Median 0.40161 0.51952 NaN 1 0 Median NaN NaN NaN 0 0 Median 5853600 4261200 1592400 5853600 4261200 1592400 0 0 0 11333 1470 11639 40495 60795 60795 1 SSLGQSASETEEDTVSVSKK MNSQQEEEEMETDARSSLGQSASETEEDTV SASETEEDTVSVSKKEKNRKRRNRKKKKKP R S S K K E 1 0 0 1 0 1 3 1 0 0 1 2 0 0 0 6 2 0 0 2 0 0 20 1 2067.9808 Q13435;Q7Z3K9;E9PPJ0;E9PJ04;H0YCG1 Q13435 302 321 SF3B2;DKFZp781L0540 Splicing factor 3B subunit 2 yes no 3 1.6671E-05 89.049 2 0.65499 0.80375 18.691 2 Median 0.65499 0.80375 18.691 2 0 Median NaN NaN NaN 0 0 Median 8277900 4502800 3775100 8277900 4502800 3775100 0 0 0 11334 1470 11640 40496;40497 60796;60797 60796 2 SSLINSLK THIRVGVVGLPNVGKSSLINSLKRSRACSV GLPNVGKSSLINSLKRSRACSVGAVPGITK K S S L K R 0 0 1 0 0 0 0 0 0 1 2 1 0 0 0 3 0 0 0 0 0 0 8 0 860.49673 Q05DU1;A0A024R9Y6;Q9NVN8 Q05DU1 266 273 GNL3L Guanine nucleotide-binding protein-like 3-like protein yes no 2 0.0016297 113.5 3 0.59631 0.7488 5.986 2 Median 0.59631 0.7488 5.986 2 0 Median NaN NaN NaN 0 0 Median 90969000 62626000 28343000 90969000 62626000 28343000 0 0 0 11335 233 11641 40498;40499;40500 60798;60799;60800;60801 60800 4 SSLLIEQPVK GFVIQEGLEPFPVSRSSLLIEQPVKKRPLL FPVSRSSLLIEQPVKKRPLLDNQVINSVCV R S S V K K 0 0 0 0 0 1 1 0 0 1 2 1 0 0 1 2 0 0 0 1 0 0 10 0 1112.6441 A5YM43;Q8NDX5;E7EX82 A5YM43 723 732 PHC3 Polyhomeotic-like protein 3 yes no 2 0.0016057 87.308 2 2 0.68996 1.0232 24.33 4 Median 0.7967 1.0002 41.158 2 0 Median 0.68996 1.0232 8.762 2 0 Median 29062000 16425000 12637000 14159000 7317200 6841800 14903000 9108300 5794800 11336 561 11642 40501;40502;40503;40504 60802;60803;60804;60805;60806 60803 3 SSLLLGFR FLKSNTLPISLQSIRSSLLLGFRRSMNINL ISLQSIRSSLLLGFRRSMNINLWSEITELL R S S F R R 0 1 0 0 0 0 0 1 0 0 3 0 0 1 0 2 0 0 0 0 0 0 8 0 891.5178 E5KNY5;P42704;B4DSR0 E5KNY5 542 549 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.0021478 110.34 3 1 0.30987 0.42606 24.887 3 Median 0.30987 0.42606 24.887 3 0 Median NaN NaN NaN 0 0 Median 15219000 8727400 6491900 11569000 8727400 2841400 3650500 0 3650500 11337 1001 11643 40505;40506;40507;40508 60807;60808;60809;60810;60811;60812 60809 6 SSLLPR PVRPAFSFYETLRERSSLLPRLDKPCPAYV SFYETLRERSSLLPRLDKPCPAYVEPMTVV R S S P R L 0 1 0 0 0 0 0 0 0 0 2 0 0 0 1 2 0 0 0 0 0 0 6 0 671.39662 Q9H6R4;A0A0A0MRW6;B4DF80;B3KPN5;Q9Y4N5;B4DYI2;P0DKV0 Q9H6R4 718 723 NOL6;DKFZp434M131;SPATA31C2;SPATA31C1 Nucleolar protein 6;Spermatogenesis-associated protein 31C2;Spermatogenesis-associated protein 31C1 yes no 2 0.035082 88.627 1 0.87639 1.1893 NaN 1 Median 0.87639 1.1893 NaN 1 0 Median NaN NaN NaN 0 0 Median 34421000 19292000 15130000 34421000 19292000 15130000 0 0 0 11338 1738 11644 40509 60813 60813 1 SSLQSQCLNEVLK DLCSRVTFVNFTVTRSSLQSQCLNEVLKAE TRSSLQSQCLNEVLKAERPDVDEKRSDLLK R S S L K A 0 0 1 0 1 2 1 0 0 0 3 1 0 0 0 3 0 0 0 1 0 0 13 0 1504.7555 Q14204;H0YJ21 Q14204 3706 3718 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.0010449 115 3 0.54533 0.69628 NaN 1 Median 0.54533 0.69628 NaN 1 0 Median NaN NaN NaN 0 0 Median 10178000 6930300 3247800 10178000 6930300 3247800 0 0 0 11339 1483 11645 40510;40511;40512 60814;60815;60816 60816 3 SSLSSAQADFNQLAELDR LEEIKALREAHDAFRSSLSSAQADFNQLAE SSAQADFNQLAELDRQIKSFRVASNPYTWF R S S D R Q 3 1 1 2 0 2 1 0 0 0 3 0 0 1 0 4 0 0 0 0 0 0 18 0 1950.9283 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16;Q14917 Q13813 2138 2155 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 1.7583E-97 257.04 3 0.7839 1.0514 5.1201 3 Median 0.7839 1.0514 5.1201 3 0 Median NaN NaN NaN 0 0 Median 63636000 34736000 28901000 63636000 34736000 28901000 0 0 0 11340 1476 11646 40513;40514;40515 60817;60818;60819;60820;60821;60822 60818 6 SSMGMDISAIDLINIESFSSR TMDGAKAKAILDASRSSMGMDISAIDLINI ISAIDLINIESFSSRVVSLSEYRQSLHTYL R S S S R V 1 1 1 2 0 0 1 1 0 4 1 0 2 1 0 6 0 0 0 0 0 0 21 0 2272.0715 A8K9K6;O00567;A0PJ92;H0YDU4 A8K9K6 250 270 NOP56 Nucleolar protein 56 yes no 2 5.9593E-23 102.38 2 0.49186 0.79205 5.2205 2 Median NaN NaN NaN 0 0 Median 0.49186 0.79205 5.2205 2 0 Median 98888000 65804000 33084000 0 0 0 98888000 65804000 33084000 11341 647 11647 40516;40517 60823;60824;60825 60823 226;227 3 SSNLSVTTDFSESLQSSNIESK TKWIDATSGIYNSEKSSNLSVTTDFSESLQ TDFSESLQSSNIESKEINGIHDESNAFESK K S S S K E 0 0 2 1 0 1 2 0 0 1 2 1 0 1 0 8 2 0 0 1 0 0 22 0 2359.1027 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424;H0YDQ3;H0YE95;H0YDG6 A0A1P7ZIM8 761 782 LMO7 LIM domain only protein 7 yes no 2 1.2662E-85 229.92 4 0.58451 0.73982 10.888 4 Median 0.58451 0.73982 10.888 4 0 Median NaN NaN NaN 0 0 Median 29299000 18513000 10786000 29299000 18513000 10786000 0 0 0 11342 525 11648 40518;40519;40520;40521 60826;60827;60828;60829;60830;60831;60832;60833;60834 60830 9 SSNSLVFQTLPR RAAEISAMLKAVTQKSSNSLVFQTLPRHMR TQKSSNSLVFQTLPRHMRRRAMSHNVKRLP K S S P R H 0 1 1 0 0 1 0 0 0 0 2 0 0 1 1 3 1 0 0 1 0 0 12 0 1347.7147 Q96F88;Q99575;E5RK39 Q96F88 126 137 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 4.997E-22 158.06 3 1 0.30901 0.41265 10.347 2 Median 0.30901 0.41265 10.347 2 0 Median NaN NaN NaN 0 0 Median 16982000 14169000 2812800 11325000 8512600 2812800 5656400 5656400 0 11343 1685 11649 40522;40523;40524;40525 60835;60836;60837;60838 60836 4 SSPEGPDPPVLTEVSK PPDLNPETEESIPSRSSPEGPDPPVLTEVS SPEGPDPPVLTEVSKQDDQQPLDLEGVKRK R S S S K Q 0 0 0 1 0 0 2 1 0 0 1 1 0 0 4 3 1 0 0 2 0 0 16 0 1637.8148 Q03164 Q03164 1684 1699 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 0.021936 28.806 1 0.93794 1.1988 NaN 1 Median 0.93794 1.1988 NaN 1 0 Median NaN NaN NaN 0 0 Median 3057700 1575700 1482000 3057700 1575700 1482000 0 0 0 11344 1438 11650 40526 60839 60839 1 SSPELEDTATSSK EESMTDDKTTKIPCKSSPELEDTATSSKRR CKSSPELEDTATSSKRRPRTRAQKVEVKEE K S S S K R 1 0 0 1 0 0 2 0 0 0 1 1 0 0 1 4 2 0 0 0 0 0 13 0 1350.6151 P46013 P46013 2827 2839 MKI67 Antigen KI-67 yes yes 2 1.2625E-12 126.19 4 2 0.87827 1.2311 11.281 5 Median 0.96283 1.2194 13.026 4 0 Median 0.81852 1.2311 NaN 1 0 Median 62557000 28159000 34399000 40933000 21157000 19776000 21624000 7001800 14622000 11345 1342 11651 40527;40528;40529;40530;40531;40532 60840;60841;60842;60843;60844;60845;60846;60847 60842 8 SSPEPVALTESETEYVIR LAAVPEFRGLGPLFKSSPEPVALTESETEY EPVALTESETEYVIRCTKHTFTNHMVFQFD K S S I R C 1 1 0 0 0 0 4 0 0 1 1 0 0 0 2 3 2 0 1 2 0 0 18 0 2005.9844 Q9Y678;B3KW21;Q8WUI6 Q9Y678 632 649 COPG1;COPG Coatomer subunit gamma-1 yes no 2 2.2296E-10 120.9 4 0.4342 0.61124 7.6971 4 Median 0.4342 0.61124 7.6971 4 0 Median NaN NaN NaN 0 0 Median 16924000 12508000 4415900 16924000 12508000 4415900 0 0 0 11346 1832 11652 40533;40534;40535;40536 60848;60849;60850;60851;60852;60853;60854 60850 7 SSPEVSSINQEALVLTAK RLISLPLSRIRVIMKSSPEVSSINQEALVL EVSSINQEALVLTAKATIYYQRRF______ K S S A K A 2 0 1 0 0 1 2 0 0 1 2 1 0 0 1 4 1 0 0 2 0 0 18 0 1871.984 E5RGS9;Q9NRG0 E5RGS9 30 47 CHRAC1 Chromatin accessibility complex protein 1 yes no 2 5.502E-06 115.12 4 1 0.45773 0.74145 24.917 4 Linear 0.54634 0.69302 24.185 3 0 Plateau 0.49398 0.73761 NaN 1 0 Median 32917000 22017000 10900000 20989000 15052000 5937900 11928000 6965400 4962200 11347 1006 11653 40537;40538;40539;40540;40541 60855;60856;60857;60858;60859;60860 60859 6 SSPGQTPEEGAQALAEFAALHGPALR ______________________________ QALAEFAALHGPALRASGVPERYWGRLLHK R S S L R A 6 1 0 0 0 2 3 3 1 0 3 0 0 1 3 2 1 0 0 0 0 0 26 0 2604.2932 A0A024R4U3;Q14166;Q9BR23 A0A024R4U3 15 40 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes no 3 0.0073722 24.096 1 0.52012 0.7011 NaN 1 Median 0.52012 0.7011 NaN 1 0 Median NaN NaN NaN 0 0 Median 5671200 3654100 2017100 5671200 3654100 2017100 0 0 0 11348 127 11654 40542 60861;60862 60861 2 SSPQAAVPYKK KPQPKVQEKADIPVKSSPQAAVPYKKDVGK IPVKSSPQAAVPYKKDVGKTLCPLCFSILK K S S K K D 2 0 0 0 0 1 0 0 0 0 0 2 0 0 2 2 0 0 1 1 0 0 11 1 1174.6346 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 607 617 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.043032 38.303 2 0.45038 0.67494 8.0375 2 Median NaN NaN NaN 0 0 Median 0.45038 0.67494 8.0375 2 0 Median 9373200 6571600 2801600 0 0 0 9373200 6571600 2801600 11349 729 11655 40543;40544 60863;60864 60864 2 SSPSILAVQR VQAKPPKVDGAEFWKSSPSILAVQRSAILK AEFWKSSPSILAVQRSAILKKQQQQQQQQQ K S S Q R S 1 1 0 0 0 1 0 0 0 1 1 0 0 0 1 3 0 0 0 1 0 0 10 0 1056.5928 O14646;Q7Z4M7 O14646 89 98 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes no 2 0.042679 39.305 1 0.3945 0.52198 NaN 1 Median 0.3945 0.52198 NaN 1 0 Median NaN NaN NaN 0 0 Median 9454800 6329500 3125300 9454800 6329500 3125300 0 0 0 11350 1169 11656 40545 60865 60865 1 SSPVEFECINEK GTFQTTMTKLKEASRSSPVEFECINEKKRQ ASRSSPVEFECINEKKRQKKKSYKNSGVIS R S S E K K 0 0 1 0 1 0 3 0 0 1 0 1 0 1 1 2 0 0 0 1 0 0 12 0 1437.6446 A0A024R994;O75131;Q05DL8;H0YB26 A0A024R994 242 253 CPNE3 Copine-3 yes no 2 0.050463 72.2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1387100 1387100 0 1387100 1387100 0 0 0 0 11351 214 11657 40546 60866 60866 1 SSQAFFSK KASFIKDKGKDKALKSSQAFFSKLQDQVKM GKDKALKSSQAFFSKLQDQVKMQINDA___ K S S S K L 1 0 0 0 0 1 0 0 0 0 0 1 0 2 0 3 0 0 0 0 0 0 8 0 900.43413 B3KPV5;O00566 B3KPV5 642 649 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 2 0.008308 78.377 1 1 1.0995 1.3545 NaN 1 Median 1.0995 1.3545 NaN 1 0 Median NaN NaN NaN 0 0 Median 30574000 11432000 19142000 25426000 11432000 13993000 5148200 0 5148200 11352 767 11658 40547;40548 60867;60868 60867 2 SSQLLEPAVEETTK QELQITTGRESKRLKSSQLLEPAVEETTKK KSSQLLEPAVEETTKKEVKVSSVTKRTPRR K S S T K K 1 0 0 0 0 1 3 0 0 0 2 1 0 0 1 2 2 0 0 1 0 0 14 0 1530.7777 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1846 1859 AHCTF1 Protein ELYS yes no 2 0.0050339 51.875 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3290000 0 3290000 0 0 0 3290000 0 3290000 11353 1670 11659 40549;40550 60869;60870 60870 2 SSQLLEPAVEETTKK QELQITTGRESKRLKSSQLLEPAVEETTKK SSQLLEPAVEETTKKEVKVSSVTKRTPRRI K S S K K E 1 0 0 0 0 1 3 0 0 0 2 2 0 0 1 2 2 0 0 1 0 0 15 1 1658.8727 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1846 1860 AHCTF1 Protein ELYS yes no 2 0.00042526 122.18 3 0.78509 0.95067 NaN 1 Median 0.78509 0.95067 NaN 1 0 Median NaN NaN NaN 0 0 Median 6775300 4378100 2397200 6775300 4378100 2397200 0 0 0 11354 1670 11660 40551;40552;40553 60871;60872;60873 60872 3 SSQQPSTPQQAPPGQPQQGTFVAHK STQPPKSAKPPAGGKSSQQPSTPQQAPPGQ APPGQPQQGTFVAHKEIKLTLLNKAADKGS K S S H K E 2 0 0 0 0 7 0 2 1 0 0 1 0 1 5 3 2 0 0 1 0 0 25 0 2630.2837 E7ERS3;B4DTK7;Q86VM9;H3BRH3;B3KRL4 E7ERS3 814 838 ZC3H18;NHN1 Zinc finger CCCH domain-containing protein 18 yes no 3 0.00012094 74 3 0.35075 0.44465 40.566 2 Median 0.35075 0.44465 40.566 2 0 Median NaN NaN NaN 0 0 Median 12253000 9129000 3124200 12253000 9129000 3124200 0 0 0 11355 859 11661 40554;40555;40556 60874;60875;60876;60877;60878 60874 5 SSQSSSQQFSGIGR GAGTYGASSTTSTGRSSQSSSQQFSGIGRS RSSQSSSQQFSGIGRSGQQPQPLMSQQFAQ R S S G R S 0 1 0 0 0 3 0 2 0 1 0 0 0 1 0 6 0 0 0 0 0 0 14 0 1454.675 Q59F66;Q92841;Q9UQL5 Q59F66 675 688 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 1.0345E-05 120.57 4 0.99456 1.3852 17.438 3 Median 0.99456 1.3852 17.438 3 0 Median NaN NaN NaN 0 0 Median 17686000 7676500 10009000 17686000 7676500 10009000 0 0 0 11356 1554 11662 40557;40558;40559;40560 60879;60880;60881;60882;60883;60884 60880 6 SSQSSVTVENASKPDFTK SNPVAASPRFHLVSKSSQSSVTVENASKPD SSVTVENASKPDFTKNSQVGSDNSSILLFD K S S T K N 1 0 1 1 0 1 1 0 0 0 0 2 0 1 1 5 2 0 0 2 0 0 18 1 1910.9222 Q8ND82;Q9UJJ2 Q8ND82 114 131 ZNF280C Zinc finger protein 280C yes no 2 5.1026E-58 205.26 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1698800 1698800 0 1698800 1698800 0 0 0 0 11357 1652 11663 40561 60885 60885 1 SSRAGLQFPVGR RGKQGGKARAKAKTRSSRAGLQFPVGRVHR KTRSSRAGLQFPVGRVHRLLRKGNYAERVG R S S G R V 1 2 0 0 0 1 0 2 0 0 1 0 0 1 1 2 0 0 0 1 0 0 12 1 1273.6891 Q8IUE6;Q08AJ9;A0A024R017;Q93077;Q7L7L0;P04908;A3KPC7;A0A024RAS2;B2R5B3;A4FTV9;A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8;B2R5B6;Q96QV6;P16104 A3KPC7 19 30 HIST2H2AB;HIST1H2AB;HIST1H2AC;HIST3H2A;HIST1H2AH;H2AFJ;HIST1H2AK;HIST1H2AJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AA;H2AFX Histone H2A type 2-B;Histone H2A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-A;Histone H2AX no no 3 0.00093726 55.188 2 0.73821 1.1893 4.8172 2 Median NaN NaN NaN 0 0 Median 0.73821 1.1893 4.8172 2 0 Median 177470000 100890000 76576000 0 0 0 177470000 100890000 76576000 11358 248;26;1622;689;1271 11664 40562;40563 60886;60887;60888;60889 60889 4 SSREDIGDNVAK TSEGLNSDLEMHADKSSREDIGDNVAKVND ADKSSREDIGDNVAKVNDSWKERFLDVENE K S S A K V 1 1 1 2 0 0 1 1 0 1 0 1 0 0 0 2 0 0 0 1 0 0 12 1 1289.6212 P49454 P49454 1973 1984 CENPF Centromere protein F yes yes 2 0.010278 55.401 1 1 0.93648 1.2601 8.9252 2 Median 0.93859 1.1831 NaN 1 0 Median 0.93436 1.3422 NaN 1 0 Median 6341300 2958700 3382600 3220900 1497400 1723500 3120400 1461300 1659100 11359 1351 11665 40564;40565 60890;60891 60891 2 SSRLPDIFEAQIAGLR LETKWTLLQEQKSAKSSRLPDIFEAQIAGL SRLPDIFEAQIAGLRGQLEALQVDGGRLEA K S S L R G 2 2 0 1 0 1 1 1 0 2 2 0 0 1 1 2 0 0 0 0 0 0 16 1 1771.9581 CON__P08729;CON__Q3KNV1;P08729;B3KY79 CON__Q3KNV1 134 149 KRT7 Keratin, type II cytoskeletal 7 no no 3 2.2293E-05 77.051 3 0.22336 0.31027 2.2073 3 Median 0.22336 0.31027 2.2073 3 0 Median NaN NaN NaN 0 0 Median 18700000 12773000 5927300 18700000 12773000 5927300 0 0 0 + 11360 968;957 11666 40566;40567;40568 60892;60893;60894 60894 3 SSSHDSGTDITSVTLGDTTAVK VATSSSAKKATGRKKSSSHDSGTDITSVTL TDITSVTLGDTTAVKTKILIKKGRGNLEKT K S S V K T 1 0 0 3 0 0 0 2 1 1 1 1 0 0 0 5 5 0 0 2 0 0 22 0 2178.0288 Q03164;E9PR05;Q9HB80 Q03164 936 957 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 3 3.6956E-09 87.496 4 2 1.0972 1.3431 11.802 5 Median 1.1286 1.368 6.9448 3 0 Plateau 0.96327 1.4575 17.844 2 0 Median 85260000 42066000 43194000 58801000 29030000 29771000 26459000 13036000 13422000 11361 1438 11667 40569;40570;40571;40572;40573;40574 60895;60896;60897;60898;60899;60900;60901;60902;60903;60904;60905 60901 11 SSSIIGSSSASHTSQATSGANSK KGGSATCRKISSKTKSSSIIGSSSASHTSQ SASHTSQATSGANSKLGIMAPPKPINRPFL K S S S K L 3 0 1 0 0 1 0 2 1 2 0 1 0 0 0 10 2 0 0 0 0 0 23 0 2151.004 H0YNU5;B2RAN0;P54132;B7ZKN7;B7Z2X2 H0YNU5 1242 1264 BLM Bloom syndrome protein yes no 3 2.8544E-39 133.98 2 0.95731 1.208 25.435 2 Median 0.95731 1.208 25.435 2 0 Median NaN NaN NaN 0 0 Median 11900000 5956600 5943100 11900000 5956600 5943100 0 0 0 11362 725 11668 40575;40576 60906;60907 60907 2 SSSLNSGNYLNPACR GSAIPKEENLSEDSKSSSLNSGNYLNPACR SSSLNSGNYLNPACRNPMYIHTSVSQDFSR K S S C R N 1 1 3 0 1 0 0 1 0 0 2 0 0 0 1 4 0 0 1 0 0 0 15 0 1638.742 Q9UQR0;B4DZR9;B4DRC2;H0Y6S1 Q9UQR0 546 560 SCML2 Sex comb on midleg-like protein 2 yes no 2 2.5753E-10 147.58 3 0.41899 0.58745 29.347 2 Median 0.41899 0.58745 29.347 2 0 Median NaN NaN NaN 0 0 Median 9050500 6247000 2803500 9050500 6247000 2803500 0 0 0 11363 1799 11669 40577;40578;40579 60908;60909;60910;60911;60912 60908 5 SSSPAPADIAQTVQEDLR PEPVLEETAPEDAQKSSSPAPADIAQTVQE PAPADIAQTVQEDLRTFSWASVTSKNLPPS K S S L R T 3 1 0 2 0 2 1 0 0 1 1 0 0 0 2 3 1 0 0 1 0 0 18 0 1883.9225 B7Z8K4;Q6FI03;Q5U0Q1;Q53HH4;Q13283;Q32P45 B7Z8K4 48 65 G3BP;DKFZp686L1159;G3BP1 Ras GTPase-activating protein-binding protein 1 yes no 2 1.9803E-09 89.013 4 0.44951 0.61369 24.782 2 Median 0.44951 0.61369 24.782 2 0 Median NaN NaN NaN 0 0 Median 15664000 13703000 1960100 15664000 13703000 1960100 0 0 0 11364 918 11670 40580;40581;40582;40583 60913;60914;60915;60916 60915 4 SSSQIPAQPSVAK NNENKKETDEVSNTKSSSQIPAQPSVAKVP TKSSSQIPAQPSVAKVPYGKGPSFNQERGT K S S A K V 2 0 0 0 0 2 0 0 0 1 0 1 0 0 2 4 0 0 0 1 0 0 13 0 1298.683 E7EPN9;Q9Y520;A0A0A0MS30;B4DQN8 E7EPN9 377 389 PRRC2C Protein PRRC2C yes no 2 0.0078383 42.001 1 1.0379 1.29 NaN 1 Median 1.0379 1.29 NaN 1 0 Median NaN NaN NaN 0 0 Median 8311000 3991500 4319500 8311000 3991500 4319500 0 0 0 11365 1010 11671 40584 60917 60917 1 SSSQVPPILQETDK STEPSVILSKSDSDKSSSQVPPILQETDKS KSSSQVPPILQETDKSKSNTKQNSVPPSQT K S S D K S 0 0 0 1 0 2 1 0 0 1 1 1 0 0 2 3 1 0 0 1 0 0 14 0 1527.7781 E5RJU9;A0A024R9D2;Q86UE4;H0YBJ8 E5RJU9 476 489 MTDH Protein LYRIC yes no 2 0.0012834 53.08 1 2 0.52318 0.77087 7.6194 3 Median 0.71199 0.86683 NaN 1 0 Median 0.50902 0.76108 1.807 2 0 Median 21832000 13010000 8821400 3409900 1500100 1909800 18422000 11510000 6911600 11366 218 11672 40585;40586;40587 60918;60919;60920;60921 60921 4 SSSSSAASDTATSTQRPLR GYAILLAVPGSSDSRSSSSSAASDTATSTQ SAASDTATSTQRPLRNLVSYLKQKQAAGVI R S S L R N 3 2 0 1 0 1 0 0 0 0 1 0 0 0 1 7 3 0 0 0 0 0 19 1 1908.9137 A0A087WWP4;Q96T37;Q59EY1 A0A087WWP4 827 845 RBM15 Putative RNA-binding protein 15 yes no 3 0.025476 19.036 1 0.72824 0.96308 NaN 1 Median NaN NaN NaN 0 0 Median 0.72824 0.96308 NaN 1 0 Median 2856500 1731500 1125000 0 0 0 2856500 1731500 1125000 11367 355 11673 40588 60922 60922 1 SSSSTEQSLMMGLR RGGPGSGGHGPLRYRSSSSTEQSLMMGLRV RSSSSTEQSLMMGLRVEDGAQQCLDCGLCF R S S L R V 0 1 0 0 0 1 1 1 0 0 2 0 2 0 0 5 1 0 0 0 0 0 14 0 1512.6912 Q8N1G0 Q8N1G0 1116 1129 ZNF687 Zinc finger protein 687 yes yes 2 0.0071411 41.689 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2549100 0 2549100 0 0 0 2549100 0 2549100 11368 1634 11674 40589 60923 60923 728;729 1 SSSTALTTNVTEQTEK PEDLEETVFTASKPKSSSTALTTNVTEQTE SSTALTTNVTEQTEKDGDKDVFASEVTPSD K S S E K D 1 0 1 0 0 1 2 0 0 0 1 1 0 0 0 3 5 0 0 1 0 0 16 0 1695.8163 Q8WYP5;B3KVE5;B3KTD2 Q8WYP5 1342 1357 AHCTF1 Protein ELYS yes no 2 3.2812E-71 232.78 3 2 0.74102 0.92304 9.1383 5 Median 0.83051 1.013 8.9738 3 0 Median 0.56677 0.89938 3.0601 2 0 Median 234880000 143230000 91653000 66149000 36007000 30143000 168730000 107220000 61510000 11369 1670 11675 40590;40591;40592;40593;40594 60924;60925;60926;60927;60928;60929;60930;60931;60932;60933;60934 60925 11 SSSTALTTNVTEQTEKDGDK PEDLEETVFTASKPKSSSTALTTNVTEQTE LTTNVTEQTEKDGDKDVFASEVTPSDLQKQ K S S D K D 1 0 1 2 0 1 2 1 0 0 1 2 0 0 0 3 5 0 0 1 0 0 20 1 2110.9866 Q8WYP5;B3KVE5;B3KTD2 Q8WYP5 1342 1361 AHCTF1 Protein ELYS yes no 3 0.024544 17.43 1 0.61177 0.87465 NaN 1 Median NaN NaN NaN 0 0 Median 0.61177 0.87465 NaN 1 0 Median 2942600 1867300 1075300 0 0 0 2942600 1867300 1075300 11370 1670 11676 40595 60935;60936 60936 2 SSSVGSSSSYPISPAVSR FADMLSGNAGGFRSRSSSVGSSSSYPISPA VGSSSSYPISPAVSRTQLASWSDPTEETGP R S S S R T 1 1 0 0 0 0 0 1 0 1 0 0 0 0 2 9 0 0 1 2 0 0 18 0 1753.8483 Q15149;D3DWL0;Q96IE3 Q15149 4384 4401 PLEC;PLEC1 Plectin yes no 2 4.7687E-15 134.06 5 2 0.73131 0.98579 53.864 6 Median 0.66292 0.89246 11.437 4 0 Median 1.8067 2.5469 2.2318 2 0 Median 71092000 36781000 34311000 50668000 29853000 20815000 20425000 6928900 13496000 11371 1507 11677 40596;40597;40598;40599;40600;40601;40602 60937;60938;60939;60940;60941;60942;60943;60944;60945;60946;60947;60948;60949 60939 13 SSTAISSIAADGEFLHELEEK QQRLEYIARAILSAKSSTAISSIAADGEFL SIAADGEFLHELEEKMEVARIQLQIQETLQ K S S E K M 3 0 0 1 0 0 4 1 1 2 2 1 0 1 0 4 1 0 0 0 0 0 21 0 2233.075 B4DLT2;A0A024R071;O75694;E9PF10;B3KMK3 B4DLT2 1089 1109 NUP155 Nuclear pore complex protein Nup155 yes no 2;3 1.2435E-12 128.74 6 0.31849 0.40382 3.3611 2 Median 0.31849 0.40382 3.3611 2 0 Median NaN NaN NaN 0 0 Median 58407000 50415000 7992400 58407000 50415000 7992400 0 0 0 11372 29 11678 40603;40604;40605;40606;40607;40608 60950;60951;60952;60953;60954;60955;60956;60957;60958 60957 9 SSTATHPPGPAVQLNK DTPFLPKPLFFRRAKSSTATHPPGPAVQLN STATHPPGPAVQLNKTPSSSKKVTFGLNRN K S S N K T 2 0 1 0 0 1 0 1 1 0 1 1 0 0 3 2 2 0 0 1 0 0 16 0 1603.8318 Q14684 Q14684 661 676 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2;3 1.9309E-42 178.53 4 1 0.70352 0.91827 6.5325 4 Median 0.72006 0.91387 3.2165 3 0 Median 0.68735 1.0161 NaN 1 0 Median 32013000 20888000 11125000 22252000 14925000 7326800 9761400 5963000 3798400 11373 1493 11679 40609;40610;40611;40612;40613 60959;60960;60961;60962;60963;60964 60960 6 SSTFSDVEAHFR KPGEMPYVCQVCQFRSSTFSDVEAHFRAAH QFRSSTFSDVEAHFRAAHENTKNLLCPFCL R S S F R A 1 1 0 1 0 0 1 0 1 0 0 0 0 2 0 3 1 0 0 1 0 0 12 0 1381.6262 Q8ND82 Q8ND82 422 433 ZNF280C Zinc finger protein 280C yes yes 2;3 0.0066904 83.869 3 1 0.73275 1.0256 11.069 4 Median 0.74817 1.0619 5.0836 3 0 Median 0.66446 0.85335 NaN 1 0 Median 16684000 9836800 6846800 13036000 7620200 5415700 3647700 2216500 1431100 11374 1652 11680 40614;40615;40616;40617 60965;60966;60967;60968;60969 60969 5 SSTGPEPPAPTPLLAER KKEKSATRPSPSPERSSTGPEPPAPTPLLA TGPEPPAPTPLLAERHGGSPQPLATTPLSQ R S S E R H 2 1 0 0 0 0 2 1 0 0 2 0 0 0 5 2 2 0 0 0 0 0 17 0 1718.8839 A0A140VK53;Q9UQ35;I3L182;Q9UQ39;I3L4D8;I3L1I8 A0A140VK53 357 373 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 2 1.7914E-10 132.06 3 0.2802 0.404 13.03 3 Median 0.2802 0.404 13.03 3 0 Median NaN NaN NaN 0 0 Median 14313000 10688000 3625000 14313000 10688000 3625000 0 0 0 11375 509 11681 40618;40619;40620 60970;60971;60972;60973;60974 60972 5 SSTIPSCGLQVSIIDYTLSR KKTSLKKLHYTLNGKSSTIPSCGLQVSIID SCGLQVSIIDYTLSRLERDGIVVFCDVSMD K S S S R L 0 1 0 1 1 1 0 1 0 3 2 0 0 0 1 5 2 0 1 1 0 0 20 0 2196.1096 A0PJ70;A8K9K0;Q8TF76 A0PJ70 673 692 GSG2 Serine/threonine-protein kinase haspin yes no 2 0.000481 79.022 3 0.98108 1.3716 8.1218 3 Median 0.98108 1.3716 8.1218 3 0 Median NaN NaN NaN 0 0 Median 6188100 3249900 2938300 6188100 3249900 2938300 0 0 0 11376 533 11682 40621;40622;40623 60975;60976;60977;60978 60977 4 SSTIYSNSAESFLPGICK IKNLHSSHSSGLMDKSSTIYSNSAESFLPG IYSNSAESFLPGICKELIGSSLDFFGQSYD K S S C K E 1 0 1 0 1 0 1 1 0 2 1 1 0 1 1 5 1 0 1 0 0 0 18 0 1959.9248 Q15058 Q15058 1226 1243 KIF14 Kinesin-like protein KIF14 yes yes 2 0.026249 68.83 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 650900 650900 0 650900 650900 0 0 0 0 11377 1504 11683 40624 60979 60979 1 SSTPAQLAFMR VYLAIQSSQAGGELKSSTPAQLAFMRVYCG GELKSSTPAQLAFMRVYCGPSPSCLVQSSS K S S M R V 2 1 0 0 0 1 0 0 0 0 1 0 1 1 1 2 1 0 0 0 0 0 11 0 1207.6019 A6NEM2;P51610;H7C1C4 A6NEM2 1985 1995 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 0.006503 47.198 1 0.97262 1.454 NaN 1 Median NaN NaN NaN 0 0 Median 0.97262 1.454 NaN 1 0 Median 6943400 3763900 3179600 0 0 0 6943400 3763900 3179600 11378 564 11684 40625 60980;60981 60981 197 2 SSTPLPTISSSAENTR EKKLLKLREQGTESRSSTPLPTISSSAENT STPLPTISSSAENTRQNGSNDSDRYSDNEE R S S T R Q 1 1 1 0 0 0 1 0 0 1 1 0 0 0 2 5 3 0 0 0 0 0 16 0 1646.8111 A0A024RBE7;P42167;G5E972;A0A024RBH7;Q59G12;H0YJH7;P42166 P42166 158 173 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin no no 2 5.56E-10 100.73 4 2 0.54205 0.74314 14.452 6 Median 0.51743 0.7031 6.1339 4 0 Median 0.563 0.92037 4.1858 2 0 Median 316470000 203040000 113430000 122100000 78455000 43640000 194370000 124590000 69787000 11379 1335;270 11685 40626;40627;40628;40629;40630;40631 60982;60983;60984;60985;60986;60987;60988;60989;60990;60991;60992 60983 11 SSTVATLQGTPDHGDPR ERERWAVIQGQAVRKSSTVATLQGTPDHGD TVATLQGTPDHGDPRTPGPPRSTPLEENVV K S S P R T 1 1 0 2 0 1 0 2 1 0 1 0 0 0 2 2 3 0 0 1 0 0 17 0 1737.8282 Q8IVT2 Q8IVT2 155 171 MISP Mitotic interactor and substrate of PLK1 yes yes 2 2.4807E-16 150.26 6 0.32545 0.45128 NaN 1 Median 0.32545 0.45128 NaN 1 0 Median NaN NaN NaN 0 0 Median 4078100 2954600 1123500 4078100 2954600 1123500 0 0 0 11380 1624 11686 40632;40633;40634;40635;40636;40637 60993;60994;60995;60996;60997;60998 60994 6 SSTVHILSQLLR GSEEPRHSEAADSPRSSTVHILSQLLRLRQ SPRSSTVHILSQLLRLRQCCCHLSLLKSAL R S S L R L 0 1 0 0 0 1 0 0 1 1 3 0 0 0 0 3 1 0 0 1 0 0 12 0 1352.7776 A0A024R0F1;Q9UNY4 A0A024R0F1 911 922 TTF2 Transcription termination factor 2 yes no 2;3 0.0015938 101.39 1 1 0.84253 1.1693 6.9715 2 Median 0.80137 1.113 NaN 1 0 Median 0.88579 1.2284 NaN 1 0 Median 9043400 4297800 4745600 3186000 1570900 1615100 5857400 2726900 3130500 11381 33 11687 40638;40639 60999;61000;61001 60999 3 SSVAVLTQESFAEHR ______________________________ SSVAVLTQESFAEHRSGLVPQQIKVATLNS M S S H R S 2 1 0 0 0 1 2 0 1 0 1 0 0 1 0 3 1 0 0 2 0 0 15 0 1659.8216 B2R5V9;A0A024R4E5;Q00341;B4DKR8;C9JT62;C9JHS7;C9JK79;C9JHZ8;C9JZI8;C9J5E5;C9JIZ1;C9JMQ6;C9JQ82;C9JBS3;C9JEJ8;C9JHN6;C9JHS9;C9J739 B2R5V9 2 16 HDLBP Vigilin no no 2 7.577E-11 120.55 3 1 0.55822 0.75596 NaN 1 Median 0.55822 0.75596 NaN 1 0 Median NaN NaN NaN 0 0 Median 16914000 4996800 11917000 10988000 4996800 5991300 5925700 0 5925700 11382 122 11688 40640;40641;40642;40643 61002;61003;61004;61005;61006;61007 61006 6 SSVIIIQAR FLSAKHQRQVYLQIRSSVIIIQARSKGFIQ VYLQIRSSVIIIQARSKGFIQKRKFQEIKN R S S A R S 1 1 0 0 0 1 0 0 0 3 0 0 0 0 0 2 0 0 0 1 0 0 9 0 985.59203 Q8IZT6;Q4G1H2;Q4G1H0;A0A087WV76 Q8IZT6 2911 2919 ASPM Abnormal spindle-like microcephaly-associated protein yes no 2 0.025057 52.786 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11383 1631 11689 40644 61008 61008 1 SSVINTLR KQISVGFIGYPNVGKSSVINTLRSKKVCNV GYPNVGKSSVINTLRSKKVCNVAPIAGETK K S S L R S 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 2 1 0 0 1 0 0 8 0 888.50288 Q5T0F3;Q13823;B4DPI9;H0YG10 Q5T0F3 324 331 GNL2 Nucleolar GTP-binding protein 2 yes no 2 0.0030718 104.75 2 2 0.60076 0.84273 18.714 4 Median 0.71848 0.96893 7.6252 2 0 Median 0.50077 0.71937 10.272 2 0 Median 52366000 29670000 22696000 37948000 20226000 17721000 14418000 9443100 4974600 11384 1477 11690 40645;40646;40647;40648 61009;61010;61011;61012;61013 61009 5 SSVLIAQQTDTSDPEK LAFPSPEKLLRLGPKSSVLIAQQTDTSDPE SVLIAQQTDTSDPEKVVSAFLKVSSVFKDE K S S E K V 1 0 0 2 0 2 1 0 0 1 1 1 0 0 1 3 2 0 0 1 0 0 16 0 1717.837 B4DY16;A0A024R1U0;P46060;B4E0U0;Q9BSK3 B4DY16 398 413 RANGAP1 Ran GTPase-activating protein 1 yes no 2 2.4651E-22 163.71 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4745600 4745600 0 4745600 4745600 0 0 0 0 11385 70 11691 40649;40650 61014;61015 61014 2 SSVNCPFSSQDMK RKILTTEGRNALIHKSSVNCPFSSQDMKYP HKSSVNCPFSSQDMKYPSPFFVFGEKIRTR K S S M K Y 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 4 0 0 0 1 0 0 13 0 1485.6228 Q08211;B3KU66 Q08211 1025 1037 DHX9 ATP-dependent RNA helicase A yes no 2 0.002017 119.27 3 0.77204 0.98586 12.568 2 Median 0.77204 0.98586 12.568 2 0 Median NaN NaN NaN 0 0 Median 7859600 5217900 2641700 7859600 5217900 2641700 0 0 0 11386 1448 11692;11693 40651;40652;40653 61016;61017;61018 61016 657 2 SSVQEECVSTISSSKDEDPLAATR PSEELELDKWKTTMKSSVQEECVSTISSSK TISSSKDEDPLAATREFIEMWRLLGREVPE K S S T R E 2 1 0 2 1 1 3 0 0 1 1 1 0 0 1 6 2 0 0 2 0 0 24 1 2595.197 Q7L0Y3;C9JVB6 Q7L0Y3 72 95 TRMT10C Mitochondrial ribonuclease P protein 1 yes no 3 2.8424E-20 130.52 4 0.3637 0.48306 7.1159 2 Median 0.3637 0.48306 7.1159 2 0 Median NaN NaN NaN 0 0 Median 17541000 13653000 3887900 17541000 13653000 3887900 0 0 0 11387 1610 11694 40654;40655;40656;40657 61019;61020;61021;61022;61023;61024 61023 6 SSVSDAPVHITASGEPVPISEESEELDQK KLSESKSDGRERSKKSSVSDAPVHITASGE EPVPISEESEELDQKTFSICKERMRPVKAA K S S Q K T 2 0 0 2 0 1 5 1 1 2 1 1 0 0 3 6 1 0 0 3 0 0 29 0 3036.4411 O14646;H0Y8V4;A0A087WVF4 O14646 1384 1412 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes no 3 6.4414E-12 81.904 3 2 0.64684 0.86942 8.9252 5 Median 0.65836 0.83042 4.0161 3 0 Median 0.62402 0.97277 0.83594 2 0 Median 105090000 62207000 42878000 56945000 33963000 22981000 48141000 28244000 19897000 11388 1169 11695 40658;40659;40660;40661;40662 61025;61026;61027;61028;61029;61030;61031;61032;61033;61034;61035;61036;61037 61029 13 SSVTSAAAVSALAGVQDQLIEK RRNRKFKEAERLFSKSSVTSAAAVSALAGV AVSALAGVQDQLIEKREPGSGTESDTSPDF K S S E K R 5 0 0 1 0 2 1 1 0 1 2 1 0 0 0 4 1 0 0 3 0 0 22 0 2144.1325 Q9HAF1;B1AK63 Q9HAF1 92 113 MEAF6 Chromatin modification-related protein MEAF6 yes no 2 1.3133E-71 207.55 4 1 0.87549 1.0996 4.7685 5 Median 0.8784 1.1075 5.2864 4 0 Median 0.6643 1.0731 NaN 1 0 Median 204190000 114100000 90087000 130920000 70265000 60653000 73270000 43835000 29434000 11389 1748 11696 40663;40664;40665;40666;40667 61038;61039;61040;61041;61042;61043;61044;61045;61046;61047 61039 10 SSWPASTQEGLR SEKISVDITLALESKSSWPASTQEGLRIQN ESKSSWPASTQEGLRIQNWLSAKVRKQLRL K S S L R I 1 1 0 0 0 1 1 1 0 0 1 0 0 0 1 3 1 1 0 0 0 0 12 0 1317.6313 Q8N884 Q8N884 328 339 MB21D1 Cyclic GMP-AMP synthase yes yes 2 0.046345 31.758 1 0.74505 1.0449 NaN 1 Median NaN NaN NaN 0 0 Median 0.74505 1.0449 NaN 1 0 Median 11848000 6420200 5427500 0 0 0 11848000 6420200 5427500 11390 1643 11697 40668 61048 61048 1 SSYDVFQLEFNDGAYNIK FIGCRKVTGTLDANRSSYDVFQLEFNDGAY DVFQLEFNDGAYNIKDSTGKYWTVGSDSAV R S S I K D 1 0 2 2 0 1 1 1 0 1 1 1 0 2 0 2 0 0 2 1 0 0 18 0 2108.9691 B3KTA3;Q16658;B3KTM9 B3KTA3 388 405 FSCN1 Fascin yes no 2 7.5717E-06 66.498 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4744800 4744800 0 4744800 4744800 0 0 0 0 11391 778 11698 40669;40670 61049;61050 61049 2 SSYLEYQK EEEITPTIQKLKEERSSYLEYQKVMREIEH QKLKEERSSYLEYQKVMREIEHLSRLYIAY R S S Q K V 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 2 0 0 2 0 0 0 8 0 1016.4815 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q05D74;Q7Z2X1;Q5T821 A0A024R158 215 222 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 1;2 6.0924E-11 161.9 6 2 0.72713 0.9382 8.3022 3 Median 0.72713 0.9382 8.3022 3 0 Median NaN NaN NaN 0 0 Median 292180000 139380000 152800000 251390000 139380000 112010000 40784000 0 40784000 11392 50 11699 40671;40672;40673;40674;40675;40676;40677;40678 61051;61052;61053;61054;61055;61056;61057;61058;61059;61060 61054 10 STAELEAEELEK PVLQTKHRARAVTCKSTAELEAEELEKLQQ TCKSTAELEAEELEKLQQYKFKARELDPRI K S T E K L 2 0 0 0 0 0 5 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 12 0 1347.6406 Q643R0;Q9ULW0;B3KM90 Q643R0 385 396 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 5.7613E-22 158.79 2 2 0.65128 0.98049 6.9438 4 Median 0.7445 0.93053 10.83 2 0 Median 0.61232 0.98049 0.013772 2 0 Median 174170000 103300000 70869000 57079000 30887000 26192000 117090000 72414000 44677000 11393 1581 11700 40679;40680;40681;40682 61061;61062;61063;61064;61065;61066 61062 6 STAGDTHLGGEDFDNR DVSILTIEDGIFEVKSTAGDTHLGGEDFDN TAGDTHLGGEDFDNRMVNHFIAEFKRKHKK K S T N R M 1 1 1 3 0 0 1 3 1 0 1 0 0 1 0 1 2 0 0 0 0 0 16 0 1690.7183 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;Q53HF2;E9PN89 V9HW22 221 236 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein no no 2;3 4.0588E-85 256.95 8 3 0.56773 0.77856 33.946 9 Median 0.56348 0.76959 6.988 8 0 Median 1.3479 2.0952 NaN 1 0 Median 653840000 394850000 258990000 589660000 368190000 221470000 64185000 26659000 37526000 11394 1253 11701 40683;40684;40685;40686;40687;40688;40689;40690;40691;40692;40693 61067;61068;61069;61070;61071;61072;61073;61074;61075;61076;61077;61078;61079;61080;61081;61082;61083;61084;61085;61086 61068 20 STAGNFLVNPLEPK EQEQEHNGPLDNKGKSTAGNFLVNPLEPKN KSTAGNFLVNPLEPKNAEKLKVKIADLGNA K S T P K N 1 0 2 0 0 0 1 1 0 0 2 1 0 1 2 1 1 0 0 1 0 0 14 0 1485.7827 Q96SB4;A0A024RCU9;A8K8B2;H3BLV9 Q96SB4 473 486 SRPK1 SRSF protein kinase 1 yes no 2 0.00039036 98.368 5 1 0.83975 1.064 5.1713 3 Plateau 0.83975 1.064 5.1713 3 0 Plateau NaN NaN NaN 0 0 Median 32638000 23511000 9126500 27364000 18238000 9126500 5273300 5273300 0 11395 1699 11702 40694;40695;40696;40697;40698;40699 61087;61088;61089;61090;61091;61092;61093 61089 7 STANVLEETTVK EKMKSEEQPMDLENRSTANVLEETTVKKEK ENRSTANVLEETTVKKEKEDEKELVKLPVI R S T V K K 1 0 1 0 0 0 2 0 0 0 1 1 0 0 0 1 3 0 0 2 0 0 12 0 1290.6667 Q96T23;H0YER1;H0YCN2;Q05DG0 Q96T23 266 277 RSF1 Remodeling and spacing factor 1 yes no 2 0.00082154 68.107 1 2 0.85064 1.2722 55.905 3 Median 0.40446 0.52026 NaN 1 0 Median 0.91574 1.3605 9.4882 2 0 Median 19371000 11795000 7575400 4734300 3304300 1429900 14637000 8491100 6145400 11396 1702 11703 40700;40701;40702 61094;61095;61096;61097 61094 4 STAPETAIECTQAPAPASEDEK SLKEEESIEGEKEVKSTAPETAIECTQAPA IECTQAPAPASEDEKVVVEPPEGEEKVEKA K S T E K V 5 0 0 1 1 1 4 0 0 1 0 1 0 0 3 2 3 0 0 0 0 0 22 0 2302.0271 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 1559 1580 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 9.5769E-98 240.5 4 1 0.99386 1.5135 21.387 5 Linear 0.83817 1.0231 2.9451 4 0 Linear 1.0109 1.5962 NaN 1 0 Median 131160000 69741000 61417000 80176000 43529000 36647000 50982000 26212000 24769000 11397 428 11704 40703;40704;40705;40706;40707 61098;61099;61100;61101;61102;61103;61104;61105;61106;61107;61108;61109;61110 61102 13 STAPLLDVFSSMLK DSEEQQESARAVPEKSTAPLLDVFSSMLKD KSTAPLLDVFSSMLKDTTSQHRAHLFDLNC K S T L K D 1 0 0 1 0 0 0 0 0 0 3 1 1 1 1 3 1 0 0 1 0 0 14 0 1507.7956 Q9BTC0 Q9BTC0 825 838 DIDO1 Death-inducer obliterator 1 yes yes 2 0.0022475 42.556 1 0.65975 0.97968 NaN 1 Median NaN NaN NaN 0 0 Median 0.65975 0.97968 NaN 1 0 Median 7432200 4587700 2844500 0 0 0 7432200 4587700 2844500 11398 1713 11705 40708 61111 61111 778 1 STAPSAAASASASAAASSPAGGGAEALELLEHCGVCR GSPGPGEGSAGGEKRSTAPSAAASASASAA GAEALELLEHCGVCRERLRPEREPRLLPCL R S T C R E 12 1 0 0 2 0 3 4 1 0 3 0 0 0 2 7 1 0 0 1 0 0 37 0 3441.5889 B2R8R5;Q13263 B2R8R5 33 69 TRIM28 Transcription intermediary factor 1-beta yes no 3 0.00041263 55.096 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2659500 2659500 0 2659500 2659500 0 0 0 0 11399 716 11706 40709;40710 61112;61113 61113 2 STAYEDYYYHPPPR DKKRKERQAARQASRSTAYEDYYYHPPPRM RSTAYEDYYYHPPPRMPPPIRGRGRGGGRG R S T P R M 1 1 0 1 0 0 1 0 1 0 0 0 0 0 3 1 1 0 4 0 0 0 14 0 1757.7686 Q0VGD6;Q6MZS5;B2R7W4;O43390;B4DT28;B4DMB1;B4DMD1;Q7Z334 Q0VGD6 402 415 HNRPR;DKFZp686A13234;HNRNPR;DKFZp686O0665 Heterogeneous nuclear ribonucleoprotein R yes no 3 0.00016175 96.067 3 0.45511 0.61853 34.171 3 Median 0.45511 0.61853 34.171 3 0 Median NaN NaN NaN 0 0 Median 19526000 11832000 7694300 19526000 11832000 7694300 0 0 0 11400 711 11707 40711;40712;40713 61114;61115;61116;61117;61118;61119 61118 6 STCIYGGAPK VQQVAAEYCRACRLKSTCIYGGAPKGPQIR ACRLKSTCIYGGAPKGPQIRDLERGVEICI K S T P K G 1 0 0 0 1 0 0 2 0 1 0 1 0 0 1 1 1 0 1 0 0 0 10 0 1052.4961 Q59F66;Q92841;B4DZQ7;B4DN41;J3KTA4;B5BUE6;P17844;B4DNG2;Q7Z2V5;Q59E92;J3KRZ1;J3QRQ7 B4DN41 187 196 DDX17;DDX5;DKFZp686J01190 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 no no 2 0.0024053 70.919 1 0.43343 0.53637 NaN 1 Median 0.43343 0.53637 NaN 1 0 Median NaN NaN NaN 0 0 Median 39692000 28004000 11687000 39692000 28004000 11687000 0 0 0 11401 833;1554 11708 40714 61120 61120 1 STDEYSEADEEEEEEEGKPSRK ELAKESKRSVRKRGRSTDEYSEADEEEEEE ADEEEEEEEGKPSRKRLHRIETDEEESCDN R S T R K R 1 1 0 2 0 0 9 1 0 0 0 2 0 0 1 3 1 0 1 0 0 0 22 2 2572.0573 Q96T23 Q96T23 1277 1298 RSF1 Remodeling and spacing factor 1 yes yes 3 0.0061761 85.203 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11402 1702 11709 40715;40716 61121;61122 61121 2 STDTLNLPVSYFSQK KLCVVGKAKKPRSFKSTDTLNLPVSYFSQK STDTLNLPVSYFSQKGAWMDLSIFRQWFDK K S T Q K G 0 0 1 1 0 1 0 0 0 0 2 1 0 1 1 3 2 0 1 1 0 0 15 0 1698.8465 Q9Y4A0 Q9Y4A0 239 253 JRKL Jerky protein homolog-like yes yes 2 0.020903 40.589 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1166600 0 1166600 1166600 0 1166600 0 0 0 11403 1824 11710 40717 61123 61123 1 STELLIR RPGTVALREIRRYQKSTELLIRKLPFQRLV REIRRYQKSTELLIRKLPFQRLVREIAQDF K S T I R K 0 1 0 0 0 0 1 0 0 1 2 0 0 0 0 1 1 0 0 0 0 0 7 0 830.48617 B2R4P9;P84243;B4E380;K7EK07;Q16695;Q6NXT2;B2R6Y1;K7EMV3;B4DEB1;K7ES00;K7EP01;P68431;Q5TEC6;Q71DI3 B2R4P9 58 64 H3F3A;H3F3B;HIST3H3;H3F3C;HIST1H3A;HIST2H3PS2;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.3C;Histone H3.1;Histone H3.2 no no 2 5.3369E-16 181.15 267 9 0.68816 0.94967 14.777 56 Median 0.70236 0.95252 14.959 52 0 Median 0.55944 1.0153 11.538 4 0 Linear 22457000000 20456000000 2001000000 18663000000 18122000000 540300000 3794800000 2334000000 1460700000 11404 685;1424;1605;1577 11711 40718;40719;40720;40721;40722;40723;40724;40725;40726;40727;40728;40729;40730;40731;40732;40733;40734;40735;40736;40737;40738;40739;40740;40741;40742;40743;40744;40745;40746;40747;40748;40749;40750;40751;40752;40753;40754;40755;40756;40757;40758;40759;40760;40761;40762;40763;40764;40765;40766;40767;40768;40769;40770;40771;40772;40773;40774;40775;40776;40777;40778;40779;40780;40781;40782;40783;40784;40785;40786;40787;40788;40789;40790;40791;40792;40793;40794;40795;40796;40797;40798;40799;40800;40801;40802;40803;40804;40805;40806;40807;40808;40809;40810;40811;40812;40813;40814;40815;40816;40817;40818;40819;40820;40821;40822;40823;40824;40825;40826;40827;40828;40829;40830;40831;40832;40833;40834;40835;40836;40837;40838;40839;40840;40841;40842;40843;40844;40845;40846;40847;40848;40849;40850;40851;40852;40853;40854;40855;40856;40857;40858;40859;40860;40861;40862;40863;40864;40865;40866;40867;40868;40869;40870;40871;40872;40873;40874;40875;40876;40877;40878;40879;40880;40881;40882;40883;40884;40885;40886;40887;40888;40889;40890;40891;40892;40893;40894;40895;40896;40897;40898;40899;40900;40901;40902;40903;40904;40905;40906;40907;40908;40909;40910;40911;40912;40913;40914;40915;40916;40917;40918;40919;40920;40921;40922;40923;40924;40925;40926;40927;40928;40929;40930;40931;40932;40933;40934;40935;40936;40937;40938;40939;40940;40941;40942;40943;40944;40945;40946;40947;40948;40949;40950;40951;40952;40953;40954;40955;40956;40957;40958;40959;40960;40961;40962;40963;40964;40965;40966;40967;40968;40969;40970;40971;40972;40973;40974;40975;40976;40977;40978;40979;40980;40981;40982;40983;40984;40985;40986;40987;40988;40989;40990;40991;40992;40993 61124;61125;61126;61127;61128;61129;61130;61131;61132;61133;61134;61135;61136;61137;61138;61139;61140;61141;61142;61143;61144;61145;61146;61147;61148;61149;61150;61151;61152;61153;61154;61155;61156;61157;61158;61159;61160;61161;61162;61163;61164;61165;61166;61167;61168;61169;61170;61171;61172;61173;61174;61175;61176;61177;61178;61179;61180;61181;61182;61183;61184;61185;61186;61187;61188;61189;61190;61191;61192;61193;61194;61195;61196;61197;61198;61199;61200;61201;61202;61203;61204;61205;61206;61207;61208;61209;61210;61211;61212;61213;61214;61215;61216;61217;61218;61219;61220;61221;61222;61223;61224;61225;61226;61227;61228;61229;61230;61231;61232;61233;61234;61235;61236;61237;61238;61239;61240;61241;61242;61243;61244;61245;61246;61247;61248;61249;61250;61251;61252;61253;61254;61255;61256;61257;61258;61259;61260;61261;61262;61263;61264;61265;61266;61267;61268;61269;61270;61271;61272;61273;61274;61275;61276;61277;61278;61279;61280;61281;61282;61283;61284;61285;61286;61287;61288;61289;61290;61291;61292;61293;61294;61295;61296;61297;61298;61299;61300;61301;61302;61303;61304;61305;61306;61307;61308;61309;61310;61311;61312;61313;61314;61315;61316;61317;61318;61319;61320;61321;61322;61323;61324;61325;61326;61327;61328;61329;61330;61331;61332;61333;61334;61335;61336;61337;61338;61339;61340;61341;61342;61343;61344;61345;61346;61347;61348;61349;61350;61351;61352;61353;61354;61355;61356;61357;61358;61359;61360;61361;61362;61363;61364;61365;61366;61367;61368;61369;61370;61371;61372;61373;61374;61375;61376;61377;61378;61379;61380;61381;61382;61383;61384;61385;61386;61387;61388;61389;61390;61391;61392;61393;61394;61395;61396;61397;61398;61399;61400;61401;61402;61403;61404;61405;61406;61407;61408;61409;61410;61411;61412;61413;61414;61415;61416;61417;61418;61419;61420;61421;61422;61423;61424;61425;61426;61427;61428;61429;61430;61431;61432;61433;61434;61435;61436;61437;61438;61439;61440;61441;61442;61443;61444;61445;61446;61447;61448;61449;61450;61451;61452;61453;61454;61455;61456;61457;61458;61459;61460;61461 61169 338 STELLIRK RPGTVALREIRRYQKSTELLIRKLPFQRLV EIRRYQKSTELLIRKLPFQRLVREIAQDFK K S T R K L 0 1 0 0 0 0 1 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 8 1 958.58113 B2R4P9;P84243;B4E380;K7EK07;Q16695;Q6NXT2;B2R6Y1;K7EMV3;B4DEB1;K7ES00;K7EP01;P68431;Q5TEC6;Q71DI3 B2R4P9 58 65 H3F3A;H3F3B;HIST3H3;H3F3C;HIST1H3A;HIST2H3PS2;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.3C;Histone H3.1;Histone H3.2 no no 2 8.6681E-05 147.69 7 2 0.66103 0.9779 16.366 7 Median 0.67784 0.89589 17.005 5 0 Median 0.65733 1.1364 3.6743 2 0 Median 977110000 521160000 455950000 849190000 446070000 403130000 127920000 75093000 52824000 11405 685;1424;1605;1577 11712 40994;40995;40996;40997;40998;40999;41000;41001;41002 61462;61463;61464;61465;61466;61467;61468;61469;61470;61471;61472;61473;61474;61475;61476;61477 61473 15 STELLIRKLPFQR RPGTVALREIRRYQKSTELLIRKLPFQRLV QKSTELLIRKLPFQRLVREIAQDFKTDLRF K S T Q R L 0 2 0 0 0 1 1 0 0 1 3 1 0 1 1 1 1 0 0 0 0 0 13 2 1599.9461 B2R4P9;P84243;B4E380;K7EK07;Q16695;Q6NXT2;B2R6Y1;K7EMV3;B4DEB1;K7ES00;K7EP01;P68431;Q5TEC6;Q71DI3 B2R4P9 58 70 H3F3A;H3F3B;HIST3H3;H3F3C;HIST1H3A;HIST2H3PS2;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.3C;Histone H3.1;Histone H3.2 no no 3 0.0055776 38.3 2 0.6883 1.1581 3.7829 2 Median NaN NaN NaN 0 0 Median 0.6883 1.1581 3.7829 2 0 Median 36466000 21138000 15328000 0 0 0 36466000 21138000 15328000 11406 685;1424;1605;1577 11713 41003;41004 61478;61479 61478 2 STESLQANVQR ARTIGISVDPRRRNKSTESLQANVQRLKEY RRNKSTESLQANVQRLKEYRSKLILFPRKP K S T Q R L 1 1 1 0 0 2 1 0 0 0 1 0 0 0 0 2 1 0 0 1 0 0 11 0 1231.6157 Q6NZ55;A8K4C8;P26373;J3QSB4 Q6NZ55 106 116 RPL13 60S ribosomal protein L13 yes no 2 1.9416E-57 257.27 4 2 0.8946 1.1571 11.031 6 Linear 0.7411 1.166 8.191 4 0 Linear 0.53217 0.88146 2.3831 2 0 Median 3377300000 1977800000 1399500000 2833900000 1623600000 1210300000 543390000 354200000 189190000 11407 604 11714 41005;41006;41007;41008;41009;41010 61480;61481;61482;61483;61484;61485;61486;61487;61488 61480 8 STFLFYLVETEDK NLHVKLRSVVKEACKSTFLFYLVETEDKSF CKSTFLFYLVETEDKSFFVRTKNLLRKGGH K S T D K S 0 0 0 1 0 0 2 0 0 0 2 1 0 2 0 1 2 0 1 1 0 0 13 0 1590.7817 Q5VWN6;Q6IPC8 Q5VWN6 2183 2195 FAM208B;C10orf18 Protein FAM208B yes no 2 0.00048461 100.55 1 0.71674 0.87947 NaN 1 Median 0.71674 0.87947 NaN 1 0 Median NaN NaN NaN 0 0 Median 843490 515190 328290 843490 515190 328290 0 0 0 11408 1579 11715 41011 61489 61489 1 STFSTNYR ______________________________ ______________________________ R S T Y R S 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 2 2 0 1 0 0 0 8 0 974.44576 F8VZY9;B2RA03;A0A024RAY2;P05783 F8VZY9 7 14 KRT18 Keratin, type I cytoskeletal 18 yes no 2 4.7092E-11 167.24 4 2 0.22665 0.30861 95.013 6 Median 0.22332 0.30457 1.4456 4 0 Median 1.2261 1.9238 2.6117 2 0 Median 343390000 255560000 87831000 286150000 231650000 54500000 57242000 23912000 33331000 11409 252 11716 41012;41013;41014;41015;41016;41017 61490;61491;61492;61493;61494;61495;61496;61497;61498;61499 61494 10 STFVLDEFK AAEPKAKDPFAHLPKSTFVLDEFKRKYSNE FAHLPKSTFVLDEFKRKYSNEDTLSVALPY K S T F K R 0 0 0 1 0 0 1 0 0 0 1 1 0 2 0 1 1 0 0 1 0 0 9 0 1084.5441 Q53YD7;P26641;B4DUP0 Q53YD7 286 294 EEF1G Elongation factor 1-gamma yes no 2 0.007264 69.598 2 3 0.64817 0.87856 113.63 2 Median 0.32299 0.3934 NaN 1 0 Median 1.3007 1.9621 NaN 1 0 Median 43290000 29034000 14256000 30944000 25365000 5578800 12346000 3668300 8677200 11410 1299 11717 41018;41019;41020;41021;41022 61500;61501;61502;61503;61504;61505;61506 61505 7 STFVLDEFKR AAEPKAKDPFAHLPKSTFVLDEFKRKYSNE AHLPKSTFVLDEFKRKYSNEDTLSVALPYF K S T K R K 0 1 0 1 0 0 1 0 0 0 1 1 0 2 0 1 1 0 0 1 0 0 10 1 1240.6452 Q53YD7;P26641;B4DUP0 Q53YD7 286 295 EEF1G Elongation factor 1-gamma yes no 3 0.050965 24.853 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3176900 3176900 0 3176900 3176900 0 0 0 0 11411 1299 11718 41023 61507 61507 1 STGEAFVQFASK IVPNGITLTMDYQGRSTGEAFVQFASKEIA QGRSTGEAFVQFASKEIAENALGKHKERIG R S T S K E 2 0 0 0 0 1 1 1 0 0 0 1 0 2 0 2 1 0 0 1 0 0 12 0 1270.6194 Q53F48;A0A024QZK8;P31942 Q53F48 56 67 HNRPH3;HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 2 1.0513E-09 112.13 3 2 0.32613 0.40501 2.7324 2 Median 0.32613 0.40501 2.7324 2 0 Median NaN NaN NaN 0 0 Median 36487000 23951000 12536000 32172000 23951000 8221000 4315200 0 4315200 11412 15 11719 41024;41025;41026;41027;41028 61508;61509;61510;61511;61512;61513 61510 6 STGEAFVQFASQEIAEK IVPNGITLPVDFQGRSTGEAFVQFASQEIA GEAFVQFASQEIAEKALKKHKERIGHRYIE R S T E K A 3 0 0 0 0 2 3 1 0 1 0 1 0 2 0 2 1 0 0 1 0 0 17 0 1840.8843 G8JLB6;P31943;E9PCY7;D6RIU0;D6RBM0;H0YB39;E5RGH4;E5RGV0;E7EN40;P55795;B4DFK9 G8JLB6 151 167 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 2 1.0571E-71 277.31 4 2 0.32267 0.41928 126.03 6 Median 0.30382 0.39619 6.4064 4 0 Median 2.8393 4.546 4.7571 2 0 Median 450780000 284850000 165930000 331900000 251480000 80426000 118880000 33376000 85503000 11413 1084;1380 11720 41029;41030;41031;41032;41033;41034 61514;61515;61516;61517;61518;61519;61520;61521;61522;61523;61524;61525;61526 61514 13 STGGDFGNPLRK ______________________________ ______________________________ M S T R K F 0 1 1 1 0 0 0 3 0 0 1 1 0 1 1 1 1 0 0 0 0 0 12 1 1247.6258 F5H3K7;F5GX61;Q6FGX3;Q53ET8;A0A024R5J5;A0A024R5H8;P20340 F5H3K7 2 13 RAB6A Ras-related protein Rab-6A yes no 2 0.011818 87.789 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2130000 2130000 0 2130000 2130000 0 0 0 0 11414 144 11721 41035 61527 61527 1 STGILGVCK EELYSLLEDPYPMVRSTGILGVCKITSKYW PYPMVRSTGILGVCKITSKYWEMMPPTILI R S T C K I 0 0 0 0 1 0 0 2 0 1 1 1 0 0 0 1 1 0 0 1 0 0 9 0 933.49535 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5 Q86XI2 394 402 NCAPG2 Condensin-2 complex subunit G2 yes no 2 0.015788 55.531 1 1 0.55566 0.73504 39.621 2 Median 0.76439 0.97271 NaN 1 0 Median 0.40393 0.55544 NaN 1 0 Median 19573000 11135000 8438300 15548000 8586200 6961400 4025400 2548500 1477000 11415 1621 11722 41036;41037 61528;61529 61529 2 STGLILDSGATHTTAIPVHDGYVLQQGIVK FLCKTAVLTAFANGRSTGLILDSGATHTTA IPVHDGYVLQQGIVKSPLAGDFITMQCREL R S T V K S 2 0 0 2 0 2 0 4 2 3 3 1 0 0 1 2 4 0 1 3 0 0 30 0 3090.635 Q6FI97;Q53FS0;O96019 Q6FI97 165 194 BAF53A;ACTL6A Actin-like protein 6A yes no 3;4 4.8082E-55 149.93 8 4 0.98311 1.5751 32.311 12 Linear 0.62234 0.77738 4.9711 8 0 Median 0.9577 1.5105 7.6267 4 0 Median 574820000 312460000 262360000 230520000 135730000 94796000 344290000 176730000 167570000 11416 1227 11723 41038;41039;41040;41041;41042;41043;41044;41045;41046;41047;41048;41049 61530;61531;61532;61533;61534;61535;61536;61537;61538;61539;61540;61541;61542;61543;61544;61545;61546;61547;61548;61549;61550;61551;61552 61548 23 STGNFLTLTQAIDK RANGHLLLNSEKMSKSTGNFLTLTQAIDKF KSTGNFLTLTQAIDKFSADGMRLALADAGD K S T D K F 1 0 1 1 0 1 0 1 0 1 2 1 0 1 0 1 3 0 0 0 0 0 14 0 1507.7882 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3;Q9NVP8 B4E266 674 687 LARS Leucine--tRNA ligase, cytoplasmic yes no 2 9.7619E-11 152.4 3 0.60339 0.76653 15.859 3 Median 0.60339 0.76653 15.859 3 0 Median NaN NaN NaN 0 0 Median 28558000 16853000 11705000 28558000 16853000 11705000 0 0 0 11417 732 11724 41050;41051;41052 61553;61554;61555;61556;61557;61558;61559 61553 7 STGTETGSNINVNSELNPSTGNR VNKPLSATGRKPYVRSTGTETGSNINVNSE NINVNSELNPSTGNRSREQSSEAAETGVSE R S T N R S 0 1 5 0 0 0 2 3 0 1 1 0 0 0 1 4 4 0 0 1 0 0 23 0 2348.084 G1UI16;Q29RF7;B3KMN2;Q96DB6 G1UI16 1159 1181 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 0.026834 24.481 1 0.93742 1.4004 NaN 1 Median NaN NaN NaN 0 0 Median 0.93742 1.4004 NaN 1 0 Median 6903300 3683500 3219800 0 0 0 6903300 3683500 3219800 11418 1076 11725 41053 61560 61560 1 STIGAYFLK CHQGKLSCSTWNYQKSTIGAYFLKPKELKK TWNYQKSTIGAYFLKPKELKKDDITATAVD K S T L K P 1 0 0 0 0 0 0 1 0 1 1 1 0 1 0 1 1 0 1 0 0 0 9 0 998.54368 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 422 430 WDR36 WD repeat-containing protein 36 yes no 2 0.0089237 76.774 3 2 1.0688 1.1799 8.0877 5 Plateau 1.0688 1.3407 9.7341 3 0 Plateau 0.73572 1.1407 5.9607 2 0 Median 188930000 103480000 85453000 135470000 72673000 62796000 53459000 30803000 22657000 11419 404 11726 41054;41055;41056;41057;41058 61561;61562;61563;61564;61565;61566;61567;61568 61565 8 STIGAYFLKPK CHQGKLSCSTWNYQKSTIGAYFLKPKELKK NYQKSTIGAYFLKPKELKKDDITATAVDIT K S T P K E 1 0 0 0 0 0 0 1 0 1 1 2 0 1 1 1 1 0 1 0 0 0 11 1 1223.6914 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 422 432 WDR36 WD repeat-containing protein 36 yes no 2 0.012238 60.91 2 1 1.0218 1.2566 3.7927 3 Median 1.0348 1.2807 2.6901 2 0 Median 0.75106 1.21 NaN 1 0 Median 34070000 17975000 16095000 16509000 7565100 8943500 17562000 10410000 7151700 11420 404 11727 41059;41060;41061 61569;61570;61571 61569 3 STISTELALALR RHIILVLSGKGGVGRSTISTELALALRHAG VGRSTISTELALALRHAGKKVGILDVDLCG R S T L R H 2 1 0 0 0 0 1 0 0 1 3 0 0 0 0 2 2 0 0 0 0 0 12 0 1273.7242 B2RDN3;H3BNF0;Q2YS46;H3BNS4;Q9Y5Y2;H3BRK5;H3BMW1 B2RDN3 29 40 NUBP2;NUBP1 Cytosolic Fe-S cluster assembly factor NUBP2 yes no 2 0.00037297 131.52 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6997200 6997200 0 6997200 6997200 0 0 0 0 11421 737 11728 41062;41063 61572;61573 61572 2 STITSREIQTAVR RIAGEASRLAHYNKRSTITSREIQTAVRLL KRSTITSREIQTAVRLLLPGELAKHAVSEG R S T V R L 1 2 0 0 0 1 1 0 0 2 0 0 0 0 0 2 3 0 0 1 0 0 13 1 1460.7947 B2R4S9;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;B4DR52;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;O60814;Q0D2M2;P57053;A0A024RCJ2;Q16778;P33778;P23527;P06899 B2R4S9 88 100 HIST1H2BI;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;H2BFS;HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J no no 3 0.0018863 43.03 2 0.62378 0.92354 3.2278 2 Median NaN NaN NaN 0 0 Median 0.62378 0.92354 3.2278 2 0 Median 30561000 18316000 12246000 0 0 0 30561000 18316000 12246000 11422 25;295 11729 41064;41065 61574;61575;61576;61577 61574 4 STLASVNIQALPDK VARRVYLTTQLKQKKSTLASVNIQALPDKG KSTLASVNIQALPDKGQKLIKQIQELEEVL K S T D K G 2 0 1 1 0 1 0 0 0 1 2 1 0 0 1 2 1 0 0 1 0 0 14 0 1455.7933 A0A024R0F1;Q9UNY4 A0A024R0F1 426 439 TTF2 Transcription termination factor 2 yes no 2 3.9709E-14 116.84 3 0.72705 0.92041 7.258 3 Median 0.72705 0.92041 7.258 3 0 Median NaN NaN NaN 0 0 Median 38082000 21806000 16276000 38082000 21806000 16276000 0 0 0 11423 33 11730 41066;41067;41068 61578;61579;61580;61581 61581 4 STLDIVLANK YINPHNGKHSPMVAKSTLDIVLANKDRLNS PMVAKSTLDIVLANKDRLNSAIIYDRDFSY K S T N K D 1 0 1 1 0 0 0 0 0 1 2 1 0 0 0 1 1 0 0 1 0 0 10 0 1072.6128 B4E0I8;B4DNN4;P23921;Q53GZ5 B4E0I8 22 31 RRM1 Ribonucleoside-diphosphate reductase;Ribonucleoside-diphosphate reductase large subunit yes no 2 0.0076826 66.692 1 2 0.39398 0.512 NaN 1 Median 0.39398 0.512 NaN 1 0 Median NaN NaN NaN 0 0 Median 9155400 3569900 5585500 5668400 3569900 2098500 3487000 0 3487000 11424 839 11731 41069;41070;41071 61582;61583;61584 61584 3 STLENQNWR DVYFRKTKAATILTKSTLENQNWRATTLPT ATILTKSTLENQNWRATTLPTDFNYNVDTL K S T W R A 0 1 2 0 0 1 1 0 0 0 1 0 0 0 0 1 1 1 0 0 0 0 9 0 1146.5418 Q15003;B4DRG7;E9PHA2;A8K4T8;C9J470 Q15003 496 504 NCAPH Condensin complex subunit 2 yes no 2 0.0017994 91.9 1 0.47069 0.71864 NaN 1 Median NaN NaN NaN 0 0 Median 0.47069 0.71864 NaN 1 0 Median 17837000 11828000 6009400 0 0 0 17837000 11828000 6009400 11425 1500 11732 41072 61585;61586 61585 2 STLEPVEK ITRARFEELCSDLFRSTLEPVEKALRDAKL LCSDLFRSTLEPVEKALRDAKLDKAQIHDL R S T E K A 0 0 0 0 0 0 2 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 8 0 901.47566 A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DI39;B4DWK5;B4DNT8;B4DFN9;B4DVU9;B4E1S9;B4E388;V9GZ37;B3KTT5;B4DNV4;Q53FC7;B3KSM6;B2R6X5;P17066;B4DHP5;P48741 A8K5I0 312 319 HEL-S-103;HSPA1B;HSPA1A;HSPA6;HSPA7 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 no no 2 0.02248 55.531 1 0.85252 1.0629 NaN 1 Median 0.85252 1.0629 NaN 1 0 Median NaN NaN NaN 0 0 Median 34283000 17393000 16890000 34283000 17393000 16890000 0 0 0 11426 439;701 11733 41073 61587;61588 61588 2 STLGQTDFPAHSR QYQIVERVIAVKTSKSTLGQTDFPAHSRKP SKSTLGQTDFPAHSRKPAPSNEPEYLCKWM K S T S R K 1 1 0 1 0 1 0 1 1 0 1 0 0 1 1 2 2 0 0 0 0 0 13 0 1415.6793 A0A024RC75;O14647;A0A1B0GTU9;A8K9Y5;Q8N677;B7Z3I4;Q3YLD6;A0A0D9SGK0;A0A1B0GU59 A0A024RC75 391 403 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 3 0.046386 13.418 1 0.9004 1.1476 NaN 1 Median NaN NaN NaN 0 0 Median 0.9004 1.1476 NaN 1 0 Median 3793300 1691600 2101700 0 0 0 3793300 1691600 2101700 11427 289 11734 41074 61589 61589 1 STLINSLFLTDLYPER ______________________________ TLINSLFLTDLYPERVIPGAAEKIERTVQI K S T E R V 0 1 1 1 0 0 1 0 0 1 4 0 0 1 1 2 2 0 1 0 0 0 16 0 1880.9884 C9J2Q4;B5MCX3;Q15019;B5MD47;C9IY94;C9IZU3;C9JQJ4;C9J938;C9JB25;C9JZI2;A0A1B0GXJ2;C9JFT1;F8WB65 C9J2Q4 11 26 SEPT2 Septin-2 yes no 2 0.0048415 77.185 3 0.74133 0.9852 NaN 1 Median 0.74133 0.9852 NaN 1 0 Median NaN NaN NaN 0 0 Median 4591600 1740800 2850800 4591600 1740800 2850800 0 0 0 11428 900 11735 41075;41076;41077 61590;61591;61592 61591 3 STLINSLFLTDLYSPEYPGPSHR FEFTLMVVGESGLGKSTLINSLFLTDLYSP LTDLYSPEYPGPSHRIKKTVQVEQSKVLIK K S T H R I 0 1 1 1 0 0 1 1 1 1 4 0 0 1 3 4 2 0 2 0 0 0 23 0 2606.3017 Q3B7A3;Q59EY4;B4DUD6;Q8TC62;E7ES33;Q3LIE9;A4GYY8;A8K3D0;E7EPK1;Q16181;A0A0U1RRE1;B4DNE4;A0A024RA87;G3V1Q4;A0A023T695;A0A0U1RRH9 Q3B7A3 63 85 SEPT7;Nbla02942;DKFZp686F17268 Septin-7 yes no 3 1.2864E-05 75.224 4 1.0169 1.3603 16.113 4 Median 1.0169 1.3603 16.113 4 0 Median NaN NaN NaN 0 0 Median 16228000 8040200 8188200 16228000 8040200 8188200 0 0 0 11429 555 11736 41078;41079;41080;41081 61593;61594;61595;61596;61597;61598 61596 6 STLIQCLIR PPIVVVVMGPPKVGKSTLIQCLIRNFTRQK PPKVGKSTLIQCLIRNFTRQKLTEIRGPVT K S T I R N 0 1 0 0 1 1 0 0 0 2 2 0 0 0 0 1 1 0 0 0 0 0 9 0 1102.6169 Q14692 Q14692 96 104 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.0021213 93.195 3 1.0442 1.3914 42.882 3 Median 1.0442 1.3914 42.882 3 0 Median NaN NaN NaN 0 0 Median 46833000 20854000 25979000 46833000 20854000 25979000 0 0 0 11430 1495 11737 41082;41083;41084 61599;61600;61601;61602 61602 4 STLLLLLTGK MDSRICIVGPNGVGKSTLLLLLTGKLTPTH NGVGKSTLLLLLTGKLTPTHGEMRKNHRLK K S T G K L 0 0 0 0 0 0 0 1 0 0 5 1 0 0 0 1 2 0 0 0 0 0 10 0 1057.6747 Q8NE71;Q2L6I2;Q59F96;H0YGW7 Q8NE71 665 674 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 9.2377E-09 160.82 4 2 0.68781 0.89643 25.885 6 Median 0.56947 0.71685 21.891 4 0 Median 0.77363 1.1037 0.197 2 0 Median 69716000 43281000 26434000 58179000 36769000 21410000 11537000 6512600 5024200 11431 1653 11738 41085;41086;41087;41088;41089;41090 61603;61604;61605;61606;61607;61608;61609;61610;61611;61612;61613 61605 11 STLLLNLDFGEPPPKK ______________________________ TLLLNLDFGEPPPKKALEGNAKHRNFVKKR M S T K K A 0 0 1 1 0 0 1 1 0 0 4 2 0 1 3 1 1 0 0 0 0 0 16 1 1767.9771 Q9H9L3 Q9H9L3 2 17 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 2 1.7323E-09 130.44 4 1.5735 1.9219 18.714 4 Median 1.5735 1.9219 18.714 4 0 Median NaN NaN NaN 0 0 Median 17669000 6608900 11060000 17669000 6608900 11060000 0 0 0 11432 1746 11739 41091;41092;41093;41094 61614;61615;61616;61617 61614 4 STLNEIYFGK ANIGRLVEDMENKIRSTLNEIYFGKTKDIV ENKIRSTLNEIYFGKTKDIVNGLRSVQTFA R S T G K T 0 0 1 0 0 0 1 1 0 1 1 1 0 1 0 1 1 0 1 0 0 0 10 0 1170.5921 B1AK87;B2R7T8;B1AK88;B4DWA6;P47756;Q7L4N0 B1AK87 214 223 CAPZB F-actin-capping protein subunit beta yes no 2 0.0068741 97.635 2 0.84225 1.0554 NaN 1 Median 0.84225 1.0554 NaN 1 0 Median NaN NaN NaN 0 0 Median 22013000 9560100 12452000 22013000 9560100 12452000 0 0 0 11433 672 11740 41095;41096 61618;61619;61620 61619 3 STLQCIR AVLSAAADSIKIWNRSTLQCIRTMTCEYAL DSIKIWNRSTLQCIRTMTCEYALCSFFVPG R S T I R T 0 1 0 0 1 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 7 0 876.44874 Q5TDG3;Q9UNX4;B3KMW5 Q5TDG3 444 450 WDR3 WD repeat-containing protein 3 yes no 2 0.021626 67.035 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12504000 0 12504000 12504000 0 12504000 0 0 0 11434 1576 11741 41097 61621 61621 1 STLQQLLQLPQGEEEIPEQIANTETTEDVK LDPEEEWEAMLPELKSTLQQLLQLPQGEEE IPEQIANTETTEDVKGRIYQLLAKASYKKA K S T V K G 1 0 1 1 0 5 6 1 0 2 4 1 0 0 2 1 4 0 0 1 0 0 30 0 3380.6835 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 488 517 NCAPD2 Condensin complex subunit 1 yes no 3 1.0181E-36 140.42 4 0.66732 0.83151 6.6574 4 Median 0.66732 0.83151 6.6574 4 0 Median NaN NaN NaN 0 0 Median 81221000 50790000 30430000 81221000 50790000 30430000 0 0 0 11435 757 11742 41098;41099;41100;41101 61622;61623;61624;61625;61626;61627;61628;61629 61623 8 STLSNQLLGR RVLRVVLLGAPNAGKSTLSNQLLGRKVFPV PNAGKSTLSNQLLGRKVFPVSRKVHTTRCQ K S T G R K 0 1 1 0 0 1 0 1 0 0 3 0 0 0 0 2 1 0 0 0 0 0 10 0 1087.5986 J3QSB2;J3QRV9;O75616;J3QT61 J3QSB2 127 136 ERAL1 GTPase Era, mitochondrial yes no 2 0.0015415 76.478 1 2 2.6196 3.3305 NaN 1 Median NaN NaN NaN 0 0 Median 2.6196 3.3305 NaN 1 0 Median 10033000 4383900 5648800 3397900 3397900 0 6634800 985990 5648800 11436 1147 11743 41102;41103;41104 61630;61631;61632 61631 3 STLTDSLVCK NIRNMSVIAHVDHGKSTLTDSLVCKAGIIA VDHGKSTLTDSLVCKAGIIASARAGETRFT K S T C K A 0 0 0 1 1 0 0 0 0 0 2 1 0 0 0 2 2 0 0 1 0 0 10 0 1122.5591 P13639;B4DPU3;Q6PK56;B4DRE8;B4DMC6 P13639 33 42 EEF2 Elongation factor 2 yes no 2 0.00033112 88.948 4 0.5858 0.72288 5.1693 2 Median 0.5858 0.72288 5.1693 2 0 Median NaN NaN NaN 0 0 Median 68548000 53914000 14634000 68548000 53914000 14634000 0 0 0 11437 1264 11744 41105;41106;41107;41108 61633;61634;61635;61636;61637 61636 5 STLYVSPHPDAFPSLR ______________________________ TLYVSPHPDAFPSLRALIAARYGEAGEGPG M S T L R A 1 1 0 1 0 0 0 0 1 0 2 0 0 1 3 3 1 0 1 1 0 0 16 0 1785.905 A0A024RCN6;P26640;B4DT32;A0A140T954;A2ABF4;A0A0G2JJT9 A0A024RCN6 2 17 VARS Valine--tRNA ligase yes no 2 4.4203E-06 111.12 4 0.26952 0.366 4.7285 4 Median 0.26952 0.366 4.7285 4 0 Median NaN NaN NaN 0 0 Median 38815000 29954000 8861100 38815000 29954000 8861100 0 0 0 11438 297 11745 41109;41110;41111;41112 61638;61639;61640;61641;61642;61643 61639 6 STNGDTFLGGEDFDQALLR DISILEIQKGVFEVKSTNGDTFLGGEDFDQ DTFLGGEDFDQALLRHIVKEFKRETGVDLT K S T L R H 1 1 1 3 0 1 1 3 0 0 3 0 0 2 0 1 2 0 0 0 0 0 19 0 2054.9545 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;B7Z4T3;Q2F839 B7Z4V2 252 270 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 7.0452E-24 155.06 4 0.43442 0.58363 14.757 3 Median 0.43442 0.58363 14.757 3 0 Median NaN NaN NaN 0 0 Median 39876000 28705000 11171000 39876000 28705000 11171000 0 0 0 11439 910 11746 41113;41114;41115;41116 61644;61645;61646;61647;61648;61649;61650 61645 7 STNVVYQAHHVSR ______________________________ QKSTNVVYQAHHVSRNKRGQVVGTRGGFRG K S T S R N 1 1 1 0 0 1 0 0 2 0 0 0 0 0 0 2 1 0 1 3 0 0 13 0 1496.7484 Q5TB52;B4DWB5;O95340 Q5TB52 15 27 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes no 2;3 4.0844E-06 98.368 5 0.40439 0.5504 16.456 4 Median 0.40439 0.5504 16.456 4 0 Median NaN NaN NaN 0 0 Median 65023000 52386000 12637000 65023000 52386000 12637000 0 0 0 11440 865 11747 41117;41118;41119;41120;41121 61651;61652;61653;61654;61655;61656 61654 6 STPAITLESPDIK PVWFLYSLLMKLFQRSTPAITLESPDIKYP QRSTPAITLESPDIKYPLRLIDREIISHDT R S T I K Y 1 0 0 1 0 0 1 0 0 2 1 1 0 0 2 2 2 0 0 0 0 0 13 0 1370.7293 A0A024R4X0;P00387;B1AHF3 A0A024R4X0 20 32 CYB5R3 NADH-cytochrome b5 reductase;NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 2 1.0302E-05 108.31 3 0.65395 0.82245 13.967 3 Median 0.65395 0.82245 13.967 3 0 Median NaN NaN NaN 0 0 Median 29123000 15966000 13157000 29123000 15966000 13157000 0 0 0 11441 129 11748 41122;41123;41124 61657;61658;61659;61660;61661;61662;61663 61663 7 STPDGELALPSIFSLSDRPPAVLPPCAR AADCPLSFLISEKDKSTPDGELALPSIFSL SLSDRPPAVLPPCARGNSEPGYARGQESQQ K S T A R G 3 2 0 2 1 0 1 1 0 1 4 0 0 1 6 4 1 0 0 1 0 0 28 1 2962.5222 A8K4Q6;O14867 A8K4Q6 658 685 BACH1 Transcription regulator protein BACH1 yes no 3 0.0054868 40.177 1 1.0738 1.4276 NaN 1 Median 1.0738 1.4276 NaN 1 0 Median NaN NaN NaN 0 0 Median 1421800 672460 749330 1421800 672460 749330 0 0 0 11442 607 11749 41125 61664;61665 61665 2 STPDGTEHGEFLALDLGGTNFR THPTAAVKMLPTFVRSTPDGTEHGEFLALD HGEFLALDLGGTNFRVLWVKVTDNGLQKVE R S T F R V 1 1 1 2 0 0 2 4 1 0 3 0 0 2 1 1 3 0 0 0 0 0 22 0 2333.0924 E9PB90;A8K2U2;P52789;Q53SG7 E9PB90 42 63 HK2 Hexokinase;Hexokinase-2 yes no 3 0.0069695 58.339 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1597100 1597100 0 1597100 1597100 0 0 0 0 11443 585 11750 41126 61666 61666 1 STPGSGSGPAHGPDPAHGPASCS PATLVAPASVITIVKSTPGSGSGPAHGPDP PAHGPDPAHGPASCS_______________ K S T C S - 3 0 0 1 1 0 0 5 2 0 0 0 0 0 5 5 1 0 0 0 0 0 23 0 2086.8763 Q9ULX9 Q9ULX9 142 164 MAFF Transcription factor MafF yes yes 2;3 1.7903E-08 88.264 6 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53215000 0 0 43792000 0 0 9423100 0 0 11444 1793 11751 41127;41128;41129;41130;41131;41132;41133;41134 61667;61668;61669;61670;61671;61672;61673;61674 61672 8 STPLASPSPSPGR FSEFTPQSILRSTLRSTPLASPSPSPGRSP LRSTPLASPSPSPGRSPQRLKETRISFVEE R S T G R S 1 1 0 0 0 0 0 1 0 0 1 0 0 0 4 4 1 0 0 0 0 0 13 0 1252.6412 Q8WYP5;B3KVE5;B3KTD2 Q8WYP5 1209 1221 AHCTF1 Protein ELYS yes no 2 0.0055186 65.241 2 1 0.75667 1.0393 7.6669 2 Median 0.75667 1.0393 7.6669 2 0 Median NaN NaN NaN 0 0 Median 21434000 16009000 5425200 11724000 6299100 5425200 9710000 9710000 0 11445 1670 11752 41135;41136;41137 61675;61676;61677 61677 3 STPLEENVVDREQIDFLAAR GTPDHGDPRTPGPPRSTPLEENVVDREQID ENVVDREQIDFLAARQQFLSLEQANKGAPH R S T A R Q 2 2 1 2 0 1 3 0 0 1 2 0 0 1 1 1 1 0 0 2 0 0 20 1 2301.1601 Q8IVT2 Q8IVT2 178 197 MISP Mitotic interactor and substrate of PLK1 yes yes 3 1.2509E-06 67.43 4 1 0.44788 0.60894 49.82 4 Median 0.42455 0.56867 11.491 3 0 Median 1.137 1.5361 NaN 1 0 Median 60909000 42591000 18318000 55266000 40704000 14561000 5643700 1886700 3757000 11446 1624 11753 41138;41139;41140;41141;41142 61678;61679;61680;61681;61682;61683;61684 61683 6 STPTDLILCVPHLYSCLEDR QELLGWLAEKLPTLRSTPTDLILCVPHLYS LILCVPHLYSCLEDRNGDVRKKAQDALPFF R S T D R N 0 1 0 2 2 0 1 0 1 1 4 0 0 0 2 2 2 0 1 1 0 0 20 0 2388.1454 Q14008 Q14008 1011 1030 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 0.042048 33.37 1 1.2943 1.8236 NaN 1 Median 1.2943 1.8236 NaN 1 0 Median NaN NaN NaN 0 0 Median 1416500 653790 762730 1416500 653790 762730 0 0 0 11447 1481 11754 41143 61685 61685 1 STPVTVVLPDTK TDILFTEQERGVGIKSTPVTVVLPDTKGKS GIKSTPVTVVLPDTKGKSYLFNIMDTPGHV K S T T K G 0 0 0 1 0 0 0 0 0 0 1 1 0 0 2 1 3 0 0 3 0 0 12 0 1255.7024 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3 B4DZB1 134 145 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.0054078 59.542 2 0.62937 0.78766 0.17244 2 Median 0.62937 0.78766 0.17244 2 0 Median NaN NaN NaN 0 0 Median 38314000 21540000 16774000 38314000 21540000 16774000 0 0 0 11448 654 11755 41144;41145 61686;61687 61686 2 STQAATQVVLNVPETR GAAGRSLYFGENRLRSTQAATQVVLNVPET TQAATQVVLNVPETRVTCLESGLRVASEDS R S T T R V 2 1 1 0 0 2 1 0 0 0 1 0 0 0 1 1 3 0 0 3 0 0 16 0 1712.9057 F8WEA6;F8WBE1;F8WAZ6;Q96CP5;B3KM34;A8K1E9;G3V0E4;O75439 F8WEA6 44 59 PMPCB Mitochondrial-processing peptidase subunit beta yes no 2 1.5881E-09 138.55 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1361000 1361000 0 1361000 1361000 0 0 0 0 11449 578 11756 41146 61688 61688 1 STQQDIYAGSVQPILR QETLKYQFDAFYGERSTQQDIYAGSVQPIL TQQDIYAGSVQPILRHLLEGQNASVLAYGP R S T L R H 1 1 0 1 0 3 0 1 0 2 1 0 0 0 1 2 1 0 1 1 0 0 16 0 1774.9214 Q14807;A0A024R632;B7Z9T5;H3BRB3;H3BTH5 Q14807 98 113 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 9.1037E-14 150.49 3 1 0.90358 1.2023 10.069 3 Median 0.90358 1.2023 10.069 3 0 Median NaN NaN NaN 0 0 Median 46299000 27533000 18766000 46299000 27533000 18766000 0 0 0 11450 1497 11757 41147;41148;41149;41150 61689;61690;61691;61692;61693;61694;61695;61696 61691 8 STSLETQDDDNIR CSQDCLIRIWKLYIKSTSLETQDDDNIRLK IKSTSLETQDDDNIRLKENTFTIENESVKI K S T I R L 0 1 1 3 0 1 1 0 0 1 1 0 0 0 0 2 2 0 0 0 0 0 13 0 1492.6641 Q6IA86 Q6IA86 242 254 ELP2 Elongator complex protein 2 yes yes 2 8.1016E-17 163.9 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2677100 2677100 0 2677100 2677100 0 0 0 0 11451 1585 11758 41151;41152;41153 61697;61698;61699;61700 61699 4 STSSFSCLSR GFSSGSAVVSGGSRRSTSSFSCLSRHGGGG GGSRRSTSSFSCLSRHGGGGGGFGGGGFGS R S T S R H 0 1 0 0 1 0 0 0 0 0 1 0 0 1 0 5 1 0 0 0 0 0 10 0 1130.5026 CON__P35908;P35908 CON__P35908 36 45 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2 0.020646 81.95 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16861000 16861000 0 16861000 16861000 0 0 0 0 + 11452 964 11759 41154;41155 61701;61702 61702 2 STSTSEPTTGCSLK RKTHTCQVIIENVSKSTSTSEPTTGCSLK_ KSTSTSEPTTGCSLK_______________ K S T L K - 0 0 0 0 1 0 1 1 0 0 1 1 0 0 1 4 4 0 0 0 0 0 14 0 1454.6559 Q8ND82 Q8ND82 724 737 ZNF280C Zinc finger protein 280C yes yes 2 2.2073E-06 111.5 4 1 0.76563 0.9783 38.663 5 Median 0.80757 1.0209 34.519 4 0 Median 0.51173 0.67738 NaN 1 0 Median 22103000 13035000 9068000 19257000 11093000 8163800 2845700 1941500 904170 11453 1652 11760 41156;41157;41158;41159;41160 61703;61704;61705;61706;61707;61708;61709;61710;61711;61712 61707 10 STTELDDYSTNK EASSGFLPGDRNKSRSTTELDDYSTNKNGN KSRSTTELDDYSTNKNGNNKYLDQIGNMTS R S T N K N 0 0 1 2 0 0 1 0 0 0 1 1 0 0 0 2 3 0 1 0 0 0 12 0 1372.5994 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;E9PMT2;A0A0A0MTE2 A0A1P7ZIM8 1037 1048 LMO7 LIM domain only protein 7 yes no 2 1.2991E-24 192.91 4 0.56856 0.7219 12.221 4 Median 0.56856 0.7219 12.221 4 0 Median NaN NaN NaN 0 0 Median 26306000 16051000 10255000 26306000 16051000 10255000 0 0 0 11454 525 11761 41161;41162;41163;41164 61713;61714;61715;61716;61717;61718 61715 6 STTGPFDREHLLSYLEK ALLPAGFRQKNQTSKSTTGPFDREHLLSYL TGPFDREHLLSYLEKEALEHKDREDYVPYT K S T E K E 0 1 0 1 0 0 2 1 1 0 3 1 0 1 1 2 2 0 1 0 0 0 17 1 1991.9953 Q5HYL6;Q9NYL9 Q5HYL6 59 75 DKFZp686E1899;TMOD3 Tropomodulin-3 yes no 3 0.013123 26.362 1 1.0629 1.401 NaN 1 Median 1.0629 1.401 NaN 1 0 Median NaN NaN NaN 0 0 Median 14680000 7357700 7322100 14680000 7357700 7322100 0 0 0 11455 1558 11762 41165 61719 61719 1 STTSTIESFAAQEK MKLVEQLKEERELLRSTTSTIESFAAQEKQ RSTTSTIESFAAQEKQMEVCEVCGAFLIVG R S T E K Q 2 0 0 0 0 1 2 0 0 1 0 1 0 1 0 3 3 0 0 0 0 0 14 0 1498.7151 Q6PKC2;Q86Y74;B4DJ96;A8K3C5;J3KPP4;O95232 Q6PKC2 174 187 CROP;LUC7L3 Luc7-like protein 3 yes no 2 0.042585 35.006 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5492500 5492500 0 0 0 0 5492500 5492500 0 11456 594 11763 41166 61720 61720 1 STTTGHLIYK THINIVVIGHVDSGKSTTTGHLIYKFGGID VDSGKSTTTGHLIYKFGGIDKRTIEKFEKE K S T Y K F 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 1 3 0 1 0 0 0 10 0 1119.5924 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;P68104;Q5VTE0;A0A087WVQ9;Q53GE9;Q53GA1;Q53G85;B4DNE0;A0A087WV01;Q9H2I7;Q05639;A6PW80;Q5JR01;Q6NS35;Q6NSH7 Q6IPT9 21 30 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 yes no 2 1.8595E-16 151.97 4 2 0.40165 0.53688 130.94 6 Median 0.39527 0.53774 3.5236 4 0 Linear 4.171 6.5763 4.594 2 0 Median 3583600000 2231400000 1352200000 3044300000 2133700000 910650000 539350000 97755000 441590000 11457 1421 11764 41167;41168;41169;41170;41171;41172 61721;61722;61723;61724;61725;61726;61727;61728;61729;61730;61731;61732 61728 12 STTYSSLHASENR NECHGATCLPLSVRRSTTYSSLHASENREL RRSTTYSSLHASENRELLNVHSANVSKVSF R S T N R E 1 1 1 0 0 0 1 0 1 0 1 0 0 0 0 4 2 0 1 0 0 0 13 0 1451.6641 Q8IZT6;B3KWI2 Q8IZT6 244 256 ASPM Abnormal spindle-like microcephaly-associated protein yes no 2 3.1745E-05 125.72 4 0.88995 1.2225 26.912 3 Median 0.88995 1.2225 26.912 3 0 Median NaN NaN NaN 0 0 Median 9786900 3057000 6729900 9786900 3057000 6729900 0 0 0 11458 1631 11765 41173;41174;41175;41176 61733;61734;61735;61736;61737 61735 5 STVAESVSQQILR RDHLRVNLKFLTRTRSTVAESVSQQILRQN TRSTVAESVSQQILRQNRGRKACDRPVAKT R S T L R Q 1 1 0 0 0 2 1 0 0 1 1 0 0 0 0 3 1 0 0 2 0 0 13 0 1416.7573 A0A024R1T1;Q86WX3 A0A024R1T1 84 96 RPS19BP1 Active regulator of SIRT1 yes no 2 6.1729E-11 144.77 4 1.035 1.3921 12.822 2 Median 1.035 1.3921 12.822 2 0 Median NaN NaN NaN 0 0 Median 38616000 23725000 14892000 38616000 23725000 14892000 0 0 0 11459 67 11766 41177;41178;41179;41180 61738;61739;61740;61741;61742;61743 61742 6 STVALTAAR AVLKFIEGISEKTLRSTVALTAARGRGKSA SEKTLRSTVALTAARGRGKSAALGLAIAGA R S T A R G 3 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 2 0 0 1 0 0 9 0 888.50288 Q05CW7;Q9H0A0;A0A087WV29 Q9H0A0 278 286 NAT10 N-acetyltransferase 10 no no 2 5.6483E-05 153.04 3 2 0.71898 1.0563 19.163 4 Median 0.76388 1.0477 21.814 3 0 Median 0.67672 1.0729 NaN 1 0 Median 307650000 162700000 144950000 240570000 137090000 103480000 67076000 25605000 41471000 11460 1730;1443 11767 41181;41182;41183;41184;41185 61744;61745;61746;61747;61748;61749;61750;61751 61745 8 STVLTPMFVETQASQGTLQTR CEFQEYTIDSDWRFRSTVLTPMFVETQASQ MFVETQASQGTLQTRTQEGSLSARWPVAGQ R S T T R T 1 1 0 0 0 3 1 1 0 0 2 0 1 1 1 2 5 0 0 2 0 0 21 0 2294.1576 P78527 P78527 2599 2619 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 4.3999E-08 102.64 3 2 0.65143 0.9743 32.689 3 Median 0.44522 0.56728 NaN 1 0 Median 0.67475 0.99778 3.3681 2 0 Median 30635000 18360000 12275000 1109200 930660 178540 29525000 17429000 12096000 11461 1427 11768;11769 41186;41187;41188;41189;41190 61752;61753;61754;61755;61756 61756 636 5 STVVPVPYEK VEDYFCFCYGKALGKSTVVPVPYEKMLRDQ KALGKSTVVPVPYEKMLRDQSAVVVQGLPE K S T E K M 0 0 0 0 0 0 1 0 0 0 0 1 0 0 2 1 1 0 1 3 0 0 10 0 1117.6019 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;X5D7Q9;A0A0A0VEB4 X5D2J9 131 140 GTF2I;GTF2I-RARA General transcription factor II-I yes no 2 0.0021374 101.46 4 0.51628 0.65212 20.549 4 Median 0.51628 0.65212 20.549 4 0 Median NaN NaN NaN 0 0 Median 35170000 22774000 12396000 35170000 22774000 12396000 0 0 0 11462 651 11770 41191;41192;41193;41194 61757;61758;61759;61760;61761 61760 5 STYEQVDLIGK TCPHWVFNVAKKYMKSTYEQVDLIGKKTQK KYMKSTYEQVDLIGKKTQKTAITVEHLAIK K S T G K K 0 0 0 1 0 1 1 1 0 1 1 1 0 0 0 1 1 0 1 1 0 0 11 0 1251.6347 Q9NR30 Q9NR30 392 402 DDX21 Nucleolar RNA helicase 2 yes yes 2 1.0504E-06 118.18 2 2 0.59269 0.88275 20.401 4 Median 0.57755 0.71879 22.525 2 0 Median 0.59269 0.94244 2.7206 2 0 Median 266030000 165490000 100540000 109880000 69144000 40733000 156150000 96349000 59806000 11463 1756 11771 41195;41196;41197;41198 61762;61763;61764;61765;61766 61763 5 STYEQVDLIGKK TCPHWVFNVAKKYMKSTYEQVDLIGKKTQK YMKSTYEQVDLIGKKTQKTAITVEHLAIKC K S T K K T 0 0 0 1 0 1 1 1 0 1 1 2 0 0 0 1 1 0 1 1 0 0 12 1 1379.7296 Q9NR30 Q9NR30 392 403 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 8.4489E-08 125.75 2 3 0.5544 0.77879 4.2077 4 Median 0.65432 0.80531 3.3782 2 0 Median 0.47021 0.75842 2.3914 2 0 Median 101100000 67978000 33121000 47907000 27949000 19958000 53192000 40029000 13163000 11464 1756 11772 41199;41200;41201;41202;41203 61767;61768;61769;61770;61771;61772 61771 6 STYVTEVR REHLEMELEKAEMERSTYVTEVRELKDLLT EKAEMERSTYVTEVRELKDLLTELQKKLDD R S T V R E 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 2 0 1 2 0 0 8 0 953.48181 A0A024R663;Q86UP2;G3V4Y7;B3KP76;B3KWP6;B7Z6P3;H0YJP2 A0A024R663 1221 1228 KTN1 Kinectin yes no 2 0.0018153 85.272 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1476400 1476400 0 0 0 0 1476400 1476400 0 11465 155 11773 41204 61773 61773 1 SVAEGLSGSLVQEPFQLATEK TVISQEPFVPKKEKKSVAEGLSGSLVQEPF SGSLVQEPFQLATEKRAKERQELEKRMAEV K S V E K R 2 0 0 0 0 2 3 2 0 0 3 1 0 1 1 3 1 0 0 2 0 0 21 0 2189.1216 Q643R0;Q9ULW0;B3KM90;Q96FC3 Q643R0 646 666 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 1.0597E-124 263.98 4 1 0.80298 1.008 4.6139 5 Median 0.80661 1.0157 2.4636 4 0 Median 0.59882 0.93472 NaN 1 0 Median 279210000 156660000 122550000 165810000 87121000 78689000 113400000 69539000 43862000 11466 1581 11774 41205;41206;41207;41208;41209 61774;61775;61776;61777;61778;61779;61780;61781;61782;61783;61784 61776 11 SVAGQVCLITGAGSGLGR FVLAAARWLVRPKEKSVAGQVCLITGAGSG GQVCLITGAGSGLGRLFALEFARRRALLVL K S V G R L 2 1 0 0 1 1 0 5 0 1 2 0 0 0 0 2 1 0 0 2 0 0 18 0 1701.8832 A0A024R7X6;Q8IZV5 A0A024R7X6 33 50 RDH10 Retinol dehydrogenase 10 yes no 2 0.0017948 80.371 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4342600 4342600 0 4342600 4342600 0 0 0 0 11467 187 11775 41210;41211;41212 61785;61786;61787 61786 3 SVALYDCR HPFEAQTLISGSYDKSVALYDCRSPDESHR ISGSYDKSVALYDCRSPDESHRMWRFSGQI K S V C R S 1 1 0 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 8 0 982.45422 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DNL1;B4DJV5 Q9BV37 323 330 PWP1 Periodic tryptophan protein 1 homolog yes no 2 0.0031349 104.37 4 0.72248 0.96844 7.833 3 Median 0.72248 0.96844 7.833 3 0 Median NaN NaN NaN 0 0 Median 78021000 38284000 39737000 78021000 38284000 39737000 0 0 0 11468 273 11776 41213;41214;41215;41216 61788;61789;61790;61791;61792;61793 61791 6 SVASDVPEELDFLVPK PERKRKKTEDSSSGKSVASDVPEELDFLVP VASDVPEELDFLVPKAGFFCPICSLFYSGE K S V P K A 1 0 0 2 0 0 2 0 0 0 2 1 0 1 2 2 0 0 0 3 0 0 16 0 1743.8931 Q14966;A0A096LPK8;Q57Z90;A0A096LNS4 Q14966 1910 1925 ZNF638;NP220 Zinc finger protein 638 yes no 2 0.0023409 81.92 3 0.73447 0.90392 25.699 3 Median 0.73447 0.90392 25.699 3 0 Median NaN NaN NaN 0 0 Median 13480000 9183900 4296100 13480000 9183900 4296100 0 0 0 11469 1498 11777 41217;41218;41219 61794;61795;61796;61797 61794 2 SVCLIGDK HNWMSEFKRWVPTLRSVCLIGDKEQRAAFV RWVPTLRSVCLIGDKEQRAAFVRDVLLPGE R S V D K E 0 0 0 1 1 0 0 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 8 0 890.45315 O60264;B7ZAX9;B4DZC0 O60264 257 264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 0.013466 60.91 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11470 1189 11778 41220 61798 61798 1 SVDDSHLNAIEDASFLYELEIR KHEVPPNQIVGRIERSVDDSHLNAIEDASF NAIEDASFLYELEIRFSKDHKYPYQAPLVA R S V I R F 2 1 1 3 0 0 3 0 1 2 3 0 0 1 0 3 0 0 1 1 0 0 22 0 2535.2129 Q6P158;B4DKW2;A0A087WZ11 Q6P158 337 358 DHX57 Putative ATP-dependent RNA helicase DHX57 yes no 3 0.034607 49.662 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 906110 0 906110 906110 0 906110 0 0 0 11471 1589 11779 41221 61799 61799 1 SVDFHFR GIGQPVKKSVSQVTKSVDFHFRTDERIKQH KSVSQVTKSVDFHFRTDERIKQHPKNQEEY K S V F R T 0 1 0 1 0 0 0 0 1 0 0 0 0 2 0 1 0 0 0 1 0 0 7 0 906.4348 Q643R0;Q9ULW0;B3KM90 Q643R0 257 263 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2;3 0.014369 95.793 2 2 0.53335 0.83875 13.569 3 Median 0.76824 1.039 NaN 1 0 Median 0.52719 0.82321 2.6445 2 0 Median 97511000 61201000 36310000 44294000 27274000 17020000 53217000 33927000 19290000 11472 1581 11780 41222;41223;41224;41225 61800;61801;61802;61803 61801 4 SVDPLSSK ______________________________ ______________________________ M S V S K A 0 0 0 1 0 0 0 0 0 0 1 1 0 0 1 3 0 0 0 1 0 0 8 0 831.4338 Q9ULX9;B0QY70 Q9ULX9 2 9 MAFF Transcription factor MafF yes no 1 0.01914 69.628 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 595500 0 595500 595500 0 595500 0 0 0 11473 1793 11781 41226 61804 61804 1 SVDPTLALSVYLR EDKLECSEELGDLVKSVDPTLALSVYLRAN VKSVDPTLALSVYLRANVPNKVIQCFAETG K S V L R A 1 1 0 1 0 0 0 0 0 0 3 0 0 0 1 2 1 0 1 2 0 0 13 0 1432.7926 A0A087WVQ6;Q00610 A0A087WVQ6 473 485 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 0.0098739 82.171 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2394800 2394800 0 2394800 2394800 0 0 0 0 11474 350 11782 41227;41228 61805;61806 61806 2 SVDVILDDDLVDK IQEMPEKAPAGQLPRSVDVILDDDLVDKAK PRSVDVILDDDLVDKAKPGDRVQVVGTYRC R S V D K A 0 0 0 5 0 0 0 0 0 1 2 1 0 0 0 1 0 0 0 3 0 0 13 0 1444.7297 Q8NHX6;Q53HJ4;B2R7C5;A0A0S2Z4T1;A0A0S2Z492;P25205;B4DUQ9;J3KQ69;B4DS46 Q8NHX6 216 228 HCC5;MCM3 DNA helicase;DNA replication licensing factor MCM3 yes no 2 0.00023544 70.977 2 0.43343 0.54541 23.48 2 Median 0.43343 0.54541 23.48 2 0 Median NaN NaN NaN 0 0 Median 20676000 13820000 6856000 20676000 13820000 6856000 0 0 0 11475 463 11783 41229;41230 61807;61808 61808 2 SVEDRFDQQK TRLTYEIEDEKRRRKSVEDRFDQQKNDYDQ KRRRKSVEDRFDQQKNDYDQLQKARQCEKE K S V Q K N 0 1 0 2 0 2 1 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 10 1 1250.5891 P15924;Q4LE79;B4E2A0;B4DKX6 P15924 1127 1136 DSP;DSP variant protein Desmoplakin yes no 2 0.013215 111.46 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11476 1270 11784 41231 61809 61809 1 SVEELLEAELLK EELKKVIHEKDGKIKSVEELLEAELLKVAN KIKSVEELLEAELLKVANKEKTVQDLKQEI K S V L K V 1 0 0 0 0 0 4 0 0 0 4 1 0 0 0 1 0 0 0 1 0 0 12 0 1371.7497 A0A024R663;Q86UP2;G3V4Y7;H0YJZ8;G3V5G2 A0A024R663 812 823 KTN1 Kinectin yes no 2 0.00044439 130.41 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1035100 1035100 0 1035100 1035100 0 0 0 0 11477 155 11785 41232 61810 61810 1 SVEEVASEIQPFLR LIDKTTLDKLLKGKKSVEEVASEIQPFLRG KSVEEVASEIQPFLRGAGSIAGASASPKEK K S V L R G 1 1 0 0 0 1 3 0 0 1 1 0 0 1 1 2 0 0 0 2 0 0 14 0 1602.8253 P15924;Q4LE79 P15924 2000 2013 DSP;DSP variant protein Desmoplakin yes no 2 1.5232E-09 112.15 2 0.39306 0.55058 2.9367 2 Median 0.39306 0.55058 2.9367 2 0 Median NaN NaN NaN 0 0 Median 8870700 6216800 2654000 8870700 6216800 2654000 0 0 0 11478 1270 11786 41233;41234 61811;61812 61812 2 SVEGYYQESGR DKPDVRFVIHASLPKSVEGYYQESGRAGRD SLPKSVEGYYQESGRAGRDGEISHCLLFYT K S V G R A 0 1 0 0 0 1 2 2 0 0 0 0 0 0 0 2 0 0 2 1 0 0 11 0 1273.5575 H0YNU5;B2RAN0;P54132;B7ZKN7;B7Z2X2;B7Z8C1 H0YNU5 969 979 BLM Bloom syndrome protein yes no 2 0.0035012 59.426 1 0.76697 1.0145 NaN 1 Median 0.76697 1.0145 NaN 1 0 Median NaN NaN NaN 0 0 Median 9918100 6445100 3473000 9918100 6445100 3473000 0 0 0 11479 725 11787 41235 61813 61813 1 SVELEEALPVTTAEGMAK ______________________________ LEEALPVTTAEGMAKKVTKAGGSAALSPSK M S V A K K 3 0 0 0 0 0 4 1 0 0 2 1 1 0 1 1 2 0 0 2 0 0 18 0 1873.9343 Q92522 Q92522 2 19 H1FX Histone H1x yes yes 2 1.6936E-12 101.89 5 0.99763 1.2737 14.275 5 Linear 0.99763 1.2737 14.275 5 0 Linear NaN NaN NaN 0 0 Median 24802000 12435000 12367000 24802000 12435000 12367000 0 0 0 11480 1671 11788;11789;11790 41236;41237;41238;41239;41240 61814;61815;61816;61817;61818 61817 752 4 SVENQESVEIINDLK KVSSVTKRTPRRIKRSVENQESVEIINDLK SVENQESVEIINDLKVSTVTSPSRMIRKLR R S V L K V 0 0 2 1 0 1 3 0 0 2 1 1 0 0 0 2 0 0 0 2 0 0 15 0 1715.8578 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1878 1892 AHCTF1 Protein ELYS yes no 2 0.00077194 66.989 1 0.27539 0.4183 NaN 1 Median NaN NaN NaN 0 0 Median 0.27539 0.4183 NaN 1 0 Median 12780000 9974300 2806100 0 0 0 12780000 9974300 2806100 11481 1670 11791 41241 61819 61819 1 SVEPQDAGPLER HSKGGGRVDEGPQPRSVEPQDAGPLERSQG QPRSVEPQDAGPLERSQGDEAGGHGEDRPE R S V E R S 1 1 0 1 0 1 2 1 0 0 1 0 0 0 2 1 0 0 0 1 0 0 12 0 1296.631 Q6PK21;A0A0A0MRN5;Q05BV5;Q9NZT2;B3KMQ6;V9H0E3 Q6PK21 205 216 OGFR Opioid growth factor receptor yes no 2 0.0055512 57.348 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3478900 3478900 0 3478900 3478900 0 0 0 0 11482 389 11792 41242 61820 61820 1 SVFALTNGIYPHK LPKIKAIPQLQGYLRSVFALTNGIYPHKLV LRSVFALTNGIYPHKLVF____________ R S V H K L 1 0 1 0 0 0 0 1 1 1 1 1 0 1 1 1 1 0 1 1 0 0 13 0 1445.7667 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3 Q8TBK5 273 285 RPL6 60S ribosomal protein L6 yes no 2;3 2.0041E-08 148.91 6 2 0.77601 0.97629 14.815 6 Median 0.77601 0.97629 14.815 6 0 Median NaN NaN NaN 0 0 Median 211170000 123890000 87278000 190200000 102920000 87278000 20969000 20969000 0 11483 277 11793 41243;41244;41245;41246;41247;41248;41249;41250 61821;61822;61823;61824;61825;61826;61827;61828;61829;61830;61831 61829 11 SVFDEELTNTSK EPVRGPAKKQKQGKKSVFDEELTNTSKKAL GKKSVFDEELTNTSKKALKQYRAGPSFEER K S V S K K 0 0 1 1 0 0 2 0 0 0 1 1 0 1 0 2 2 0 0 1 0 0 12 0 1368.6409 B7Z6D5;B3GQE6;Q96GQ7;Q53G15 B7Z6D5 715 726 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 1.2322E-15 167.09 2 2 0.8249 1.0274 3.889 3 Median 0.85293 1.0617 4.6431 2 0 Median 0.63375 1.0241 NaN 1 0 Median 105660000 51787000 53877000 45944000 24682000 21262000 59720000 27105000 32615000 11484 750 11794 41251;41252;41253;41254 61832;61833;61834;61835;61836;61837 61832 6 SVFDEELTNTSKK EPVRGPAKKQKQGKKSVFDEELTNTSKKAL KKSVFDEELTNTSKKALKQYRAGPSFEERK K S V K K A 0 0 1 1 0 0 2 0 0 0 1 2 0 1 0 2 2 0 0 1 0 0 13 1 1496.7359 B7Z6D5;B3GQE6;Q96GQ7;Q53G15 B7Z6D5 715 727 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2;3 1.3637E-05 91.937 2 3 0.63767 1.0187 15.895 5 Median 0.94779 1.1743 8.0682 2 0 Median 0.61923 0.97776 12.216 3 0 Median 55729000 30915000 24815000 22280000 11625000 10655000 33449000 19290000 14160000 11485 750 11795 41255;41256;41257;41258;41259 61838;61839;61840;61841;61842;61843;61844;61845;61846 61839 9 SVFDIPIFTEEFLNHSK QATHDHEKETEVKERSVFDIPIFTEEFLNH FDIPIFTEEFLNHSKAREAELRQLRKSNME R S V S K A 0 0 1 1 0 0 2 0 1 2 1 1 0 3 1 2 1 0 0 1 0 0 17 0 2022.0098 B4DMG1;Q9NP66 B4DMG1 101 117 HMG20A High mobility group protein 20A yes no 3 0.0016574 47.904 2 0.81712 1.021 15.649 2 Median 0.81712 1.021 15.649 2 0 Median NaN NaN NaN 0 0 Median 12706000 6919500 5786200 12706000 6919500 5786200 0 0 0 11486 832 11796 41260;41261 61847;61848;61849 61849 3 SVFGHICSHLTPR ALLAQPSHLMRQVARSVFGHICSHLTPRAL ARSVFGHICSHLTPRALQLILDVLNPETSE R S V P R A 0 1 0 0 1 0 0 1 2 1 1 0 0 1 1 2 1 0 0 1 0 0 13 0 1509.7511 Q9BQG0;I3L1L3 Q9BQG0 672 684 MYBBP1A Myb-binding protein 1A yes no 3 0.018591 54.199 1 1 0.69988 0.99908 18.171 2 Median 0.82617 1.1361 NaN 1 0 Median 0.5929 0.87862 NaN 1 0 Median 13691000 8093400 5597500 7152000 4458500 2693500 6539000 3635000 2904100 11487 1708 11797 41262;41263 61850;61851 61851 2 SVFINNVLSK SAVPKQVVTGTVLTRSVFINNVLSKIGEVW TVLTRSVFINNVLSKIGEVWASKEPINSTT R S V S K I 0 0 2 0 0 0 0 0 0 1 1 1 0 1 0 2 0 0 0 2 0 0 10 0 1119.6288 Q8WYP5;B3KVE5 Q8WYP5 1052 1061 AHCTF1 Protein ELYS yes no 2 6.1892E-05 107.79 2 2 0.69145 0.98121 6.892 4 Median 0.81888 1.0313 7.1103 2 0 Median 0.59648 0.94905 4.7808 2 0 Median 132700000 77148000 55550000 56496000 31067000 25429000 76202000 46081000 30121000 11488 1670 11798 41264;41265;41266;41267 61852;61853;61854;61855;61856;61857;61858;61859 61854 8 SVFVGNLPYK IRVDLASETSSRDKRSVFVGNLPYKVEESA SRDKRSVFVGNLPYKVEESAIEKHFLDCGS R S V Y K V 0 0 1 0 0 0 0 1 0 0 1 1 0 1 1 1 0 0 1 2 0 0 10 0 1122.6073 P42696;A2A2V2 P42696 288 297 RBM34 RNA-binding protein 34 yes no 2 0.015323 49.418 2 0.72736 1.0951 2.2834 2 Median NaN NaN NaN 0 0 Median 0.72736 1.0951 2.2834 2 0 Median 25603000 14587000 11016000 0 0 0 25603000 14587000 11016000 11489 1339 11799 41268;41269 61860;61861;61862 61860 3 SVGDGETVEFDVVEGEK HQTAIKKNNPRKYLRSVGDGETVEFDVVEG GDGETVEFDVVEGEKGAEAANVTGPGGVPV R S V E K G 0 0 0 2 0 0 4 3 0 0 0 1 0 1 0 1 1 0 0 4 0 0 17 0 1794.816 H0Y449;P67809;Q6PKI6;Q7KZ24;A0A0D9SEI8;Q59EB5;A0A024RAV4;B2RCC2;A0A024RAQ1;Q9Y2T7;P16989;Q59HE1 H0Y449 152 168 YBX1;YBX3;CSDA;YBX2 Nuclease-sensitive element-binding protein 1;Y-box-binding protein 2;Y-box-binding protein 3 yes no 2 4.8905E-19 203.87 4 2 0.96996 1.2782 4.4522 6 Median 1.0175 1.2799 5.5629 4 0 Median 0.82302 1.26 2.505 2 0 Median 111190000 60109000 51082000 64017000 34338000 29679000 47174000 25771000 21402000 11490 1089 11800 41270;41271;41272;41273;41274;41275 61863;61864;61865;61866;61867;61868;61869;61870;61871 61863 9 SVGDNSSDLSNVAVIDGNR GWHYLAYDWHWTTDRSVGDNSSDLSNVAVI NSSDLSNVAVIDGNRVLVTVFRQTVVPPPM R S V N R V 1 1 3 3 0 0 0 2 0 1 1 0 0 0 0 4 0 0 0 3 0 0 19 0 1917.9028 Q4LE38;O95163;B4E3I9;Q8N516;F5H2T0;B3KXE7 Q4LE38 390 408 IKBKAP variant protein;IKBKAP Elongator complex protein 1 yes no 2 1.6327E-05 144.12 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4271100 4271100 0 4271100 4271100 0 0 0 0 11491 1213 11801 41276;41277 61872;61873 61872 2 SVGGSGGGSFGDNLVTR SGSSASSVTVTRSYRSVGGSGGGSFGDNLV GGSGGGSFGDNLVTRSYLLGNSSPRTQSPQ R S V T R S 0 1 1 1 0 0 0 6 0 0 1 0 0 1 0 3 1 0 0 2 0 0 17 0 1565.7434 P02545;A0A0C4DGC5 P02545 628 644 LMNA Prelamin-A/C;Lamin-A/C yes no 2 9.4786E-30 135.58 4 2 0.70636 0.97327 52.478 6 Median 0.66532 0.91626 7.1308 4 0 Median 1.546 2.5194 0.35516 2 0 Median 386880000 197870000 189010000 228070000 135870000 92192000 158810000 61995000 96814000 11492 1229 11802 41278;41279;41280;41281;41282;41283 61874;61875;61876;61877;61878;61879;61880;61881;61882;61883;61884 61878 10 SVGQGYSVGQSMR MMSSVHLQQNNYGVKSVGQGYSVGQSMRLG VKSVGQGYSVGQSMRLGLGGNAPVSIPQQS K S V M R L 0 1 0 0 0 2 0 3 0 0 0 0 1 0 0 3 0 0 1 2 0 0 13 0 1354.6299 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 336 348 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.0014404 51.841 1 0.88557 1.2422 NaN 1 Median NaN NaN NaN 0 0 Median 0.88557 1.2422 NaN 1 0 Median 8298100 4513600 3784500 0 0 0 8298100 4513600 3784500 11493 729 11803 41284 61885;61886;61887 61886 253 3 SVGRPPGPYTR SREVSNGIEKKGKKKSVGRPPGPYTRKMIQ GKKKSVGRPPGPYTRKMIQKTAEPLLDKES K S V T R K 0 2 0 0 0 0 0 2 0 0 0 0 0 0 3 1 1 0 1 1 0 0 11 1 1185.6255 B4DZG1;Q9Y483;Q96G26 B4DZG1 299 309 MTF2 Metal-response element-binding transcription factor 2 yes no 3 0.041743 20.857 1 0.75459 1.1254 NaN 1 Median NaN NaN NaN 0 0 Median 0.75459 1.1254 NaN 1 0 Median 12083000 6636800 5445800 0 0 0 12083000 6636800 5445800 11494 878 11804 41285 61888 61888 1 SVHFPGQAVGTR RVIQQLEGAFALVFKSVHFPGQAVGTRRGS VFKSVHFPGQAVGTRRGSPLLIGVRSEHKL K S V T R R 1 1 0 0 0 1 0 2 1 0 0 0 0 1 1 1 1 0 0 2 0 0 12 0 1254.6469 Q06210 Q06210 191 202 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 3 0.023733 39.424 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11495 1445 11805 41286 61889 61889 1 SVHFQDSLDLILSADSR KPLLVKDHQYGLPIKSVHFQDSLDLILSAD HFQDSLDLILSADSRIVKMWNKNSGKIFTS K S V S R I 1 1 0 3 0 1 0 0 1 1 3 0 0 1 0 4 0 0 0 1 0 0 17 0 1901.9483 Q9BSC4;B4DS83;H7C1Z3 Q9BSC4 277 293 NOL10 Nucleolar protein 10 yes no 3 1.1685E-07 75.97 3 1 0.80722 1.0826 1.4343 2 Median 0.80722 1.0826 1.4343 2 0 Median NaN NaN NaN 0 0 Median 45241000 13071000 32170000 40726000 13071000 27656000 4514300 0 4514300 11496 1710 11806 41287;41288;41289;41290 61890;61891;61892;61893;61894 61892 4 SVHICHVAR QTVAAVLMVAQLTQRSVHICHVARKEEILL AQLTQRSVHICHVARKEEILLIKAAKARGL R S V A R K 1 1 0 0 1 0 0 0 2 1 0 0 0 0 0 1 0 0 0 2 0 0 9 0 1077.5502 Q53SY7;F8VPD4;P27708;H7C3Z5 Q53SY7 1535 1543 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 3 0.015399 57.59 3 0.28489 0.39506 NaN 1 Median 0.28489 0.39506 NaN 1 0 Median NaN NaN NaN 0 0 Median 3609900 3311700 298150 3609900 3311700 298150 0 0 0 11497 1060 11807 41291;41292;41293 61895;61896;61897 61895 3 SVILIFSVR PVNEKKLNLAFRSARSVILIFSVRESGKFQ AFRSARSVILIFSVRESGKFQGFARLSSES R S V V R E 0 1 0 0 0 0 0 0 0 2 1 0 0 1 0 2 0 0 0 2 0 0 9 0 1032.6332 J3QR07;Q96MU7 J3QR07 396 404 YTHDC1 YTH domain-containing protein 1 yes no 2 0.011222 84.743 2 0.53363 0.72041 NaN 1 Median 0.53363 0.72041 NaN 1 0 Median NaN NaN NaN 0 0 Median 3859000 2566000 1293000 3859000 2566000 1293000 0 0 0 11498 1144 11808 41294;41295 61898;61899 61899 2 SVLDAAQIVGLNCLR CVISVPSFFTDAERRSVLDAAQIVGLNCLR SVLDAAQIVGLNCLRLMNDMTAVALNYGIY R S V L R L 2 1 1 1 1 1 0 1 0 1 3 0 0 0 0 1 0 0 0 2 0 0 15 0 1627.8716 A0A024RDQ0;A0A024RDS1;Q92598;B4DF68;B4DZB4;B4DZP3 A0A024RDQ0 155 169 HSPH1 Heat shock protein 105 kDa yes no 2 4.545E-28 189.17 2 0.32399 0.44001 NaN 1 Median 0.32399 0.44001 NaN 1 0 Median NaN NaN NaN 0 0 Median 3096800 2182700 914130 3096800 2182700 914130 0 0 0 11499 320 11809 41296;41297 61900;61901;61902 61900 3 SVLDQLQDK VAMELRLTPLTVLLRSVLDQLQDKDPARIF LTVLLRSVLDQLQDKDPARIFAQPVSLKEV R S V D K D 0 0 0 2 0 2 0 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 9 0 1044.5451 Q86X06;A0A024R4V5;B4E3L9;A0A024R4W4;O95696;B7Z926;Q9Y4Q3;J3KQ61;Q59G93;B4DZC2;B4DZ41 Q86X06 573 581 BRD1;DKFZp434B094 Bromodomain-containing protein 1 yes no 2 0.026812 49.715 2 1.0148 1.4226 NaN 1 Median NaN NaN NaN 0 0 Median 1.0148 1.4226 NaN 1 0 Median 8610800 3512300 5098500 0 0 0 8610800 3512300 5098500 11500 128 11810 41298;41299 61903;61904 61903 2 SVLDQLQDKDPAR VAMELRLTPLTVLLRSVLDQLQDKDPARIF LRSVLDQLQDKDPARIFAQPVSLKEVPDYL R S V A R I 1 1 0 3 0 2 0 0 0 0 2 1 0 0 1 1 0 0 0 1 0 0 13 1 1483.7631 Q86X06;A0A024R4V5;B4E3L9;A0A024R4W4;O95696;B7Z926;Q9Y4Q3;J3KQ61;Q59G93;B4DZC2;B4DZ41 Q86X06 573 585 BRD1;DKFZp434B094 Bromodomain-containing protein 1 yes no 2;3 0.0031976 92.611 3 1.008 1.2955 8.12 3 Median 1.008 1.2955 8.12 3 0 Median NaN NaN NaN 0 0 Median 12958000 6182200 6776000 12958000 6182200 6776000 0 0 0 11501 128 11811 41300;41301;41302 61905;61906;61907 61905 3 SVLEDVNEK VVLEESKCLVRSFLKSVLEDVNEKECLMLK VRSFLKSVLEDVNEKECLMLKQLWSSSKGL K S V E K E 0 0 1 1 0 0 2 0 0 0 1 1 0 0 0 1 0 0 0 2 0 0 9 0 1031.5135 A0A0B4J291;Q8N8U2 A0A0B4J291 470 478 CDYL2 Chromodomain Y-like protein 2 yes no 2 0.025155 48.794 2 1.117 1.693 0.91631 2 Median NaN NaN NaN 0 0 Median 1.117 1.693 0.91631 2 0 Median 27858000 13965000 13893000 0 0 0 27858000 13965000 13893000 11502 417 11812 41303;41304 61908;61909;61910 61910 3 SVLELIPELNEK LLRNSRKQGKASTVKSVLELIPELNEKEEA TVKSVLELIPELNEKEEAYNSLMKSYVSEK K S V E K E 0 0 1 0 0 0 3 0 0 1 3 1 0 0 1 1 0 0 0 1 0 0 12 0 1382.7657 E5KNY5;P42704;H7C3W8 E5KNY5 1306 1317 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 1.0436E-15 136.63 4 1 0.29836 0.37577 18.067 4 Median 0.29836 0.37577 18.067 4 0 Median NaN NaN NaN 0 0 Median 67446000 36637000 30810000 49815000 36637000 13178000 17631000 0 17631000 11503 1001 11813 41305;41306;41307;41308;41309 61911;61912;61913;61914;61915;61916;61917 61914 7 SVLLLAYK LKTKGDFILVGDLMRSVLLLAYKPMEGNFE LVGDLMRSVLLLAYKPMEGNFEEIARDFNP R S V Y K P 1 0 0 0 0 0 0 0 0 0 3 1 0 0 0 1 0 0 1 1 0 0 8 0 905.5586 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 929 936 DDB1 DNA damage-binding protein 1 yes no 2 0.016539 62.717 1 0.90771 1.0955 NaN 1 Median 0.90771 1.0955 NaN 1 0 Median NaN NaN NaN 0 0 Median 26589000 14040000 12550000 26589000 14040000 12550000 0 0 0 11504 1520 11814 41310 61918;61919 61919 2 SVLLLAYKPMEGNFEEIAR LKTKGDFILVGDLMRSVLLLAYKPMEGNFE LAYKPMEGNFEEIARDFNPNWMSAVEILDD R S V A R D 2 1 1 0 0 0 3 1 0 1 3 1 1 1 1 1 0 0 1 1 0 0 19 1 2179.1347 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 929 947 DDB1 DNA damage-binding protein 1 yes no 3 1.3272E-17 96.487 5 2 0.75627 1.1568 18.985 7 Median 0.83823 1.1309 18.133 5 0 Median 0.75078 1.3031 4.7306 2 0 Median 203110000 114700000 88409000 27984000 15018000 12966000 175120000 99678000 75443000 11505 1520 11815;11816 41311;41312;41313;41314;41315;41316;41317 61920;61921;61922;61923;61924;61925;61926;61927;61928;61929;61930;61931 61926 701 12 SVNDQPSGNLPFLKPDDIQYFDK GMTGFHMQTEDRTMKSVNDQPSGNLPFLKP NLPFLKPDDIQYFDKLLVDVDESTLSPEEQ K S V D K L 0 0 2 4 0 2 0 1 0 1 2 2 0 2 3 2 0 0 1 1 0 0 23 1 2636.2758 O75533;Q7Z497;A0JLT9;Q32Q20;A0PJH5 O75533 455 477 SF3B1 Splicing factor 3B subunit 1 yes no 3 9.8777E-06 83.359 3 0.70912 0.8806 19.505 3 Plateau 0.70912 0.8806 19.505 3 0 Plateau NaN NaN NaN 0 0 Median 40222000 25102000 15120000 40222000 25102000 15120000 0 0 0 11506 1204 11817 41318;41319;41320 61932;61933;61934;61935;61936;61937 61934 6 SVNELIYK RIVEPYIAWGYPNLKSVNELIYKRGYGKIN WGYPNLKSVNELIYKRGYGKINKKRIALTD K S V Y K R 0 0 1 0 0 0 1 0 0 1 1 1 0 0 0 1 0 0 1 1 0 0 8 0 964.52295 A0A024R814;P18124;A8MUD9;O95036 A0A024R814 160 167 RPL7;WUGSC:H_RG054D04.1 60S ribosomal protein L7 yes no 1;2 1.6973E-06 190.26 7 3 0.74016 0.9498 4.0349 6 Median 0.74016 0.9498 4.0349 6 0 Median NaN NaN NaN 0 0 Median 430430000 297150000 133280000 400730000 267450000 133280000 29701000 29701000 0 11507 189 11818 41321;41322;41323;41324;41325;41326;41327;41328;41329;41330 61938;61939;61940;61941;61942;61943;61944;61945;61946;61947;61948;61949;61950 61941 13 SVNELIYKR RIVEPYIAWGYPNLKSVNELIYKRGYGKIN GYPNLKSVNELIYKRGYGKINKKRIALTDN K S V K R G 0 1 1 0 0 0 1 0 0 1 1 1 0 0 0 1 0 0 1 1 0 0 9 1 1120.6241 A0A024R814;P18124;A8MUD9 A0A024R814 160 168 RPL7 60S ribosomal protein L7 yes no 2;3 0.0067533 78.149 7 4 0.77208 1.0607 14.611 9 Median 0.7744 1.0093 11.726 5 0 Median 0.76826 1.2125 6.4364 4 0 Median 158570000 90450000 68124000 116770000 66687000 50086000 41801000 23763000 18038000 11508 189 11819 41331;41332;41333;41334;41335;41336;41337;41338;41339;41340;41341 61951;61952;61953;61954;61955;61956;61957;61958;61959;61960;61961;61962;61963;61964;61965;61966;61967 61956 17 SVNESLNNLFITEEDYQALR LVKPYLRSVQNHNNKSVNESLNNLFITEED LNNLFITEEDYQALRTSIDAYDNFDNISLA K S V L R T 1 1 3 1 0 1 3 0 0 1 3 0 0 1 0 2 1 0 1 1 0 0 20 0 2354.139 A0A087WVQ6;Q00610;K7EJJ5;J3KS13 A0A087WVQ6 1466 1485 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 1.9185E-06 122.63 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 918910 918910 0 918910 918910 0 0 0 0 11509 350 11820 41342 61968 61968 1 SVNSLDGLASVLYPGCDTLDK IKAKPVNSKPDSAYRSVNSLDGLASVLYPG GLASVLYPGCDTLDKVFTYAKNKFKNKRLL R S V D K V 1 0 1 3 1 0 0 2 0 0 4 1 0 0 1 3 1 0 1 2 0 0 21 0 2223.0729 B3KN05;B2RBE0;A0A024R497;O95573;F5H062 B3KN05 59 79 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes no 2 1.1013E-18 130.02 2 0.46782 0.61592 NaN 1 Median 0.46782 0.61592 NaN 1 0 Median NaN NaN NaN 0 0 Median 4524300 3807900 716400 4524300 3807900 716400 0 0 0 11510 118 11821 41343;41344 61969;61970;61971 61969 3 SVPTTQCLDNSK EISSVKLVSRYGELKSVPTTQCLDNSKKNE ELKSVPTTQCLDNSKKNESPFWKLYESVKK K S V S K K 0 0 1 1 1 1 0 0 0 0 1 1 0 0 1 2 2 0 0 1 0 0 12 0 1348.6293 P46013 P46013 220 231 MKI67 Antigen KI-67 yes yes 2 2.8285E-22 160.36 4 2 0.88202 1.2082 10.309 6 Median 0.94926 1.2029 11.823 4 0 Median 0.83208 1.2099 10.572 2 0 Median 181390000 89227000 92164000 169360000 84803000 84562000 12026000 4424300 7602200 11511 1342 11822 41345;41346;41347;41348;41349;41350 61972;61973;61974;61975;61976;61977;61978;61979;61980 61977 9 SVPVTVDDDDDDNDPENR HTGFCQSSGDEALSKSVPVTVDDDDDDNDP VTVDDDDDDNDPENRIAKKMLLEEIKANLS K S V N R I 0 1 2 7 0 0 1 0 0 0 0 0 0 0 2 1 1 0 0 3 0 0 18 0 2015.8192 A4LAA3;P46100;A0A096LNL9;B7Z1D8 A4LAA3 1253 1270 ATRX Transcriptional regulator ATRX no no 2 2.7259E-07 111.72 4 1 0.73749 1.0255 25.834 5 Median 0.64368 0.87321 26.584 4 0 Median 0.81229 1.1805 NaN 1 0 Median 39253000 21897000 17356000 26924000 15354000 11570000 12329000 6542600 5786500 11512 556 11823 41351;41352;41353;41354;41355 61981;61982;61983;61984;61985;61986;61987 61982 7 SVQETVLPIK AAEAKKKAVKESSIRSVQETVLPIKKRKTR ESSIRSVQETVLPIKKRKTRETVSIEVKEV R S V I K K 0 0 0 0 0 1 1 0 0 1 1 1 0 0 1 1 1 0 0 2 0 0 10 0 1112.6441 A0A140VKC4;D9ZNA4;D5L9I5;D3YJ43;D0UU70;A8K079;E9LUH4;P51608;E1B2J3;E9LUH3;C6KG45;A0A075BPP5 A0A140VKC4 307 316 MECP2 Methyl-CpG-binding protein 2 yes no 2 0.0036564 66.621 2 0.669 0.96516 NaN 1 Median NaN NaN NaN 0 0 Median 0.669 0.96516 NaN 1 0 Median 7909800 5816300 2093600 0 0 0 7909800 5816300 2093600 11513 512 11824 41356;41357 61988;61989 61989 2 SVQNDSQAIAEVLNQLK QGSSHHITVKINELKSVQNDSQAIAEVLNQ QNDSQAIAEVLNQLKDMLANFRGSEKYCYL K S V L K D 2 0 2 1 0 3 1 0 0 1 2 1 0 0 0 2 0 0 0 2 0 0 17 0 1855.964 P15924;Q4LE79;B4E2A0;B4DKX6;B4DWT7 P15924 711 727 DSP;DSP variant protein Desmoplakin yes no 2 2.109E-43 203.88 3 0.31768 0.39812 22.464 3 Plateau 0.31768 0.39812 22.464 3 0 Plateau NaN NaN NaN 0 0 Median 36874000 26882000 9992200 36874000 26882000 9992200 0 0 0 11514 1270 11825 41358;41359;41360 61990;61991;61992;61993;61994;61995 61990 6 SVQPTVSLGGFEITPPVVLR ______________________________ VSLGGFEITPPVVLRLKCGSGPVHISGQHL M S V L R L 0 1 0 0 0 1 1 2 0 1 2 0 0 1 3 2 2 0 0 4 0 0 20 0 2095.1677 Q9NX34 Q9NX34 2 21 yes yes 2 1.2311E-19 149.59 4 0.56685 0.76 5.2307 3 Median 0.56685 0.76 5.2307 3 0 Median NaN NaN NaN 0 0 Median 41734000 28063000 13671000 41734000 28063000 13671000 0 0 0 11515 1765 11826 41361;41362;41363;41364 61996;61997;61998;61999;62000;62001;62002 61996 7 SVQTTLQTDEVK GPGYHIMLPFITTFRSVQTTLQTDEVKNVP TFRSVQTTLQTDEVKNVPCGTSGGVMIYID R S V V K N 0 0 0 1 0 2 1 0 0 0 1 1 0 0 0 1 3 0 0 2 0 0 12 0 1347.6882 B2RDK6;D3DR65;O75477;B0QZ43;E5RHW4;O94905 B2RDK6 61 72 SPFH1;ERLIN1;ERLIN2 Erlin-1;Erlin-2 yes no 2 1.4503E-11 156.16 2 1 0.48614 0.61558 131.74 3 Median 0.41025 0.53168 20.721 2 0 Median 3.6695 5.1339 NaN 1 0 Median 15953000 8088400 7864800 10062000 6896700 3165700 5890800 1191700 4699100 11516 736 11827 41365;41366;41367 62003;62004;62005;62006;62007 62003 5 SVSDTYDPYLDVALEIR FGGYLRSRVKCSVCKSVSDTYDPYLDVALE SDTYDPYLDVALEIRQAANIVRALELFVKA K S V I R Q 1 1 0 3 0 0 1 0 0 1 2 0 0 0 1 2 1 0 2 2 0 0 17 0 1954.9524 A0A024R8V6;Q9P275;A0A075B784;Q9H9C5;E9PEW0;K7EMM6 A0A024R8V6 260 276 USP36;DUB1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 2 2.3617E-11 98.942 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1797400 1797400 0 1797400 1797400 0 0 0 0 11517 205 11828 41368;41369 62008;62009 62009 2 SVSIQEEQSAPSSEK KPAAEPSNGIPDSSKSVSIQEEQSAPSSEK SVSIQEEQSAPSSEKGGMNGYHVNGAINDT K S V E K G 1 0 0 0 0 2 3 0 0 1 0 1 0 0 1 5 0 0 0 1 0 0 15 0 1604.753 A0A024R101;Q86XZ4;F8VS10 A0A024R101 112 126 SPATS2 Spermatogenesis-associated serine-rich protein 2 yes no 2 4.0298E-05 77.597 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2031800 2031800 0 0 0 0 2031800 2031800 0 11518 46 11829 41370 62010 62010 1 SVSLTGAPESVQK CKVQISPDSGGLPERSVSLTGAPESVQKAK ERSVSLTGAPESVQKAKMMLDDIVSRGRGG R S V Q K A 1 0 0 0 0 1 1 1 0 0 1 1 0 0 1 3 1 0 0 2 0 0 13 0 1301.6827 A0A087WTP3;Q92945;M0R0I5;M0QXW7;M0QYH3 A0A087WTP3 191 203 KHSRP Far upstream element-binding protein 2 yes no 2 0.00029955 69.01 1 1 0.4039 0.52096 NaN 1 Median 0.4039 0.52096 NaN 1 0 Median NaN NaN NaN 0 0 Median 6718000 3148100 3569900 4821300 3148100 1673200 1896700 0 1896700 11519 335 11830 41371;41372 62011;62012 62011 2 SVSLVGEDERK VHRVGRTARAGRAGRSVSLVGEDERKMLKE RAGRSVSLVGEDERKMLKEIVKAAKAPVKA R S V R K M 0 1 0 1 0 0 2 1 0 0 1 1 0 0 0 2 0 0 0 2 0 0 11 1 1217.6252 B7Z6D5;B3GQE6;Q96GQ7;Q53G15 B7Z6D5 532 542 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 7.3026E-23 173.37 4 2 0.83414 1.0959 11.786 6 Median 0.87157 1.1539 9.3231 4 0 Median 0.57265 0.98684 4.4473 2 0 Median 308380000 175030000 133360000 207170000 110130000 97040000 101210000 64893000 36319000 11520 750 11831 41373;41374;41375;41376;41377;41378 62013;62014;62015;62016;62017;62018;62019;62020;62021;62022;62023 62017 11 SVSSNDAYNFNLEEGVHLTPFR KSENKKTVPQKKMHKSVSSNDAYNFNLEEG YNFNLEEGVHLTPFRQKVSNDSNREENNES K S V F R Q 1 1 3 1 0 0 2 1 1 0 2 0 0 2 1 3 1 0 1 2 0 0 22 0 2495.1717 B5BUA4;Q5FBB7 B5BUA4 328 349 SGOL1 Shugoshin-like 1 yes no 3 4.7557E-30 110.67 2 0.35262 0.51831 1.4887 2 Median NaN NaN NaN 0 0 Median 0.35262 0.51831 1.4887 2 0 Median 30454000 22914000 7540100 0 0 0 30454000 22914000 7540100 11521 895 11832 41379;41380 62024;62025;62026 62024 3 SVSSVLSSLTPAK YLETHPRPPKPDPVKSVSSVLSSLTPAKVA VKSVSSVLSSLTPAKVAPVINNGSPTILGK K S V A K V 1 0 0 0 0 0 0 0 0 0 2 1 0 0 1 5 1 0 0 2 0 0 13 0 1274.7082 E7ESY4;Q13330;A0A024R6P5;Q59FW1;H0Y4T7;Q9BRL8;F8W9Y9 E7ESY4 555 567 MTA1 Metastasis-associated protein MTA1 yes no 2 4.8568E-05 121.61 2 2 1.1274 1.5486 26.587 4 Median 0.95719 1.2083 8.6294 2 0 Median 1.2484 1.8983 2.3203 2 0 Median 58935000 26287000 32648000 16516000 8278200 8238300 42419000 18009000 24409000 11522 1014 11833 41381;41382;41383;41384 62027;62028;62029;62030;62031;62032;62033 62028 7 SVTEQGAELSNEER AEQAERYDDMAACMKSVTEQGAELSNEERN KSVTEQGAELSNEERNLLSVAYKNVVGARR K S V E R N 1 1 1 0 0 1 4 1 0 0 1 0 0 0 0 2 1 0 0 1 0 0 14 0 1547.7063 D0PNI1;P63104;E7EX29;E7ESK7;E5RGE1;Q6LD62;E5RIR4;E9PD24;E7EVZ2 D0PNI1 28 41 YWHAZ;14-3-3 protein 14-3-3 protein zeta/delta yes no 2 5.0047E-18 142.76 4 2 0.75037 1.0495 29.962 4 Median 0.56273 0.78101 21.469 2 0 Median 0.86408 1.2501 4.4083 2 0 Median 30793000 16176000 14617000 17411000 8999800 8411000 13382000 7176400 6206000 11523 974 11834 41385;41386;41387;41388;41389;41390 62034;62035;62036;62037;62038;62039;62040;62041 62037 8 SVTHFDSLAVIDIPGADTLDK IKAKPTSDKPGSPYRSVTHFDSLAVIDIPG SLAVIDIPGADTLDKLFDHAVSKFGKKDSL R S V D K L 2 0 0 4 0 0 0 1 1 2 2 1 0 1 1 2 2 0 0 2 0 0 21 0 2213.1216 B4DH39;Q8TAF6;O60488;D6RF95;D6RFW9;D6RDA8;D6RD96 B4DH39 61 81 FACL4;ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 3 9.4983E-05 73.722 2 0.49025 0.6179 7.1429 2 Median 0.49025 0.6179 7.1429 2 0 Median NaN NaN NaN 0 0 Median 29954000 21443000 8511100 29954000 21443000 8511100 0 0 0 11524 806 11835 41391;41392 62042;62043;62044;62045 62044 4 SVTLGYLFSQGHLTR QGALLTHFLQPIYLKSVTLGYLFSQGHLTR SVTLGYLFSQGHLTRAICCRVTRDGSAFED K S V T R A 0 1 0 0 0 1 0 2 1 0 3 0 0 1 0 2 2 0 1 1 0 0 15 0 1677.8839 Q59EC0;D3DV75;H0YCK3;A0A024DAK3;P55265 Q59EC0 1082 1096 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.005577 99.539 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2467900 1895500 572460 2467900 1895500 572460 0 0 0 11525 1552 11836 41393;41394 62046;62047;62048 62046 3 SVTVPEAENPR KKAAVAVVPLVSEDKSVTVPEAENPRDSLV SEDKSVTVPEAENPRDSLVLPPTQSSSDSS K S V P R D 1 1 1 0 0 0 2 0 0 0 0 0 0 0 2 1 1 0 0 2 0 0 11 0 1197.599 B4DLG2;O75152;B4DYM8;A0A024R8H9;A0A1B0GTU1;A0A1B0GUI2 B4DLG2 659 669 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 2 0.044277 36.334 1 1.1963 1.5426 NaN 1 Median NaN NaN NaN 0 0 Median 1.1963 1.5426 NaN 1 0 Median 2341500 1189800 1151600 0 0 0 2341500 1189800 1151600 11526 826 11837 41395 62049 62049 1 SVVCSDVEQQVIVIEEEK RRILSKPIEVQVGGRSVVCSDVEQQVIVIE CSDVEQQVIVIEEEKKFLKLLELLGHYQES R S V E K K 0 0 0 1 1 2 4 0 0 2 0 1 0 0 0 2 0 0 0 5 0 0 18 0 2089.0249 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6 A8K6X3 587 604 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 1.8467E-07 130.47 2 0.41349 0.53033 NaN 1 Median 0.41349 0.53033 NaN 1 0 Median NaN NaN NaN 0 0 Median 4451200 2903900 1547300 4451200 2903900 1547300 0 0 0 11527 424 11838 41396;41397 62050;62051 62050 2 SVVCSDVEQQVIVIEEEKK RRILSKPIEVQVGGRSVVCSDVEQQVIVIE SDVEQQVIVIEEEKKFLKLLELLGHYQESG R S V K K F 0 0 0 1 1 2 4 0 0 2 0 2 0 0 0 2 0 0 0 5 0 0 19 1 2217.1199 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6 A8K6X3 587 605 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 3 1.8214E-06 68.243 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9552200 9552200 0 9552200 9552200 0 0 0 0 11528 424 11839 41398;41399;41400 62052;62053;62054 62054 3 SVVEFLQGYIGVPHGGFPEPFR RAEAEAQAEELSFPRSVVEFLQGYIGVPHG GYIGVPHGGFPEPFRSKVLKDLPRVEGRPG R S V F R S 0 1 0 0 0 1 2 4 1 1 1 0 0 3 3 1 0 0 1 3 0 0 22 0 2431.2325 A0A024R5C5;P11498;E9PS68 A0A024R5C5 943 964 PC Pyruvate carboxylase;Pyruvate carboxylase, mitochondrial yes no 3 2.1708E-15 97.488 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7362700 7362700 0 7362700 7362700 0 0 0 0 11529 139 11840 41401;41402 62055;62056;62057;62058 62058 4 SVVGLDVGSQSCYIAVAR ______________________________ GLDVGSQSCYIAVARAGGIETIANEFSDRC M S V A R A 2 1 0 1 1 1 0 2 0 1 1 0 0 0 0 3 0 0 1 4 0 0 18 0 1879.9462 A0A024RDQ0;A0A024RDS1;Q92598;R4GN69 A0A024RDQ0 2 19 HSPH1 Heat shock protein 105 kDa yes no 2 8.6377E-05 113.37 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 807820 807820 0 807820 807820 0 0 0 0 11530 320 11841 41403 62059 62059 1 SVVGNLHR TGVILANDANAERLKSVVGNLHRLGVTNTI ANAERLKSVVGNLHRLGVTNTIISHYDGRQ K S V H R L 0 1 1 0 0 0 0 1 1 0 1 0 0 0 0 1 0 0 0 2 0 0 8 0 880.4879 P46087 P46087 424 431 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 0.00021994 135.87 2 2 0.6078 0.91886 5.3315 4 Median 0.68969 0.94947 7.4388 2 0 Median 0.56367 0.91258 3.7741 2 0 Median 294270000 176540000 117740000 176170000 102220000 73946000 118100000 74313000 43791000 11531 1343 11842 41404;41405;41406;41407 62060;62061;62062;62063;62064;62065 62060 6 SVVLQLADGQIFK VDGVIISLCCNSKTKSVVLQLADGQIFKYL TKSVVLQLADGQIFKYLWESPSLAIKPWKN K S V F K Y 1 0 0 1 0 2 0 1 0 1 2 1 0 1 0 1 0 0 0 2 0 0 13 0 1416.7977 Q4LE38;O95163;B4E3I9;Q8N516;F5H2T0;B3KXE7;Q68DI5 Q4LE38 578 590 IKBKAP variant protein;IKBKAP;DKFZp781H1425 Elongator complex protein 1 yes no 2 0.00029957 107.83 1 0.28338 0.3659 NaN 1 Median 0.28338 0.3659 NaN 1 0 Median NaN NaN NaN 0 0 Median 2488400 2029400 459020 2488400 2029400 459020 0 0 0 11532 1213 11843 41408 62066 62066 1 SVVSDLEADDVK KTSPKLSNKELKPQKSVVSDLEADDVKGSV PQKSVVSDLEADDVKGSVPLSSSPPATHFP K S V V K G 1 0 0 3 0 0 1 0 0 0 1 1 0 0 0 2 0 0 0 3 0 0 12 0 1275.6194 P11388 P11388 1374 1385 TOP2A DNA topoisomerase 2-alpha yes yes 2 3.1355E-12 161.51 4 5 0.81412 1.1652 17.348 8 Median 0.91565 1.1978 3.0707 4 0 Median 0.70401 1.0819 21.033 4 0 Median 2934500000 1587500000 1347000000 1581400000 812510000 768860000 1353100000 774980000 578160000 11533 1256 11844 41409;41410;41411;41412;41413;41414;41415;41416;41417 62067;62068;62069;62070;62071;62072;62073;62074;62075;62076;62077;62078;62079;62080;62081;62082;62083;62084;62085;62086;62087;62088;62089 62085 23 SVVSQSVCDYFFEAQEK LINCSGDIFLEKHWKSVVSQSVCDYFFEAQ VSQSVCDYFFEAQEKAADVENVPPVISTPH K S V E K A 1 0 0 1 1 2 2 0 0 0 0 1 0 2 0 3 0 0 1 3 0 0 17 0 2021.9041 B4DRN6;A0A024QZR5;Q9Y2T2 B4DRN6 22 38 AP3M1 AP-3 complex subunit mu-1 yes no 2 0.031911 69.345 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 512640 512640 0 512640 512640 0 0 0 0 11534 19 11845 41418 62090 62090 1 SVVTSIFGVK ENPKGDNRLDLLKLKSVVTSIFGVKNTELA LLKLKSVVTSIFGVKNTELAVFHDETEIQN K S V V K N 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 2 1 0 0 3 0 0 10 0 1035.5964 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z3U5;B4DVX2;Q7L4K8;Q9P1N9 Q59G75 1133 1142 IARS;DKFZp686L0869 Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.013617 57.96 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3731900 0 3731900 3731900 0 3731900 0 0 0 11535 1334 11846 41419 62091 62091 1 SVVTVIDVFYK ______________________________ DLLRSVVTVIDVFYKYTKQDGECGTLSKGE R S V Y K Y 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 1 4 0 0 11 0 1268.7016 CON__Q5D862;Q5D862 CON__Q5D862 7 17 FLG2 Filaggrin-2 yes no 2 0.0026208 101.65 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3585000 3585000 0 3585000 3585000 0 0 0 0 + 11536 971 11847 41420;41421 62092;62093 62093 2 SVYAHFPINVVIQENGSLVEIR NMIKGVTLGFRYKMRSVYAHFPINVVIQEN INVVIQENGSLVEIRNFLGEKYIRRVRMRP R S V I R N 1 1 2 0 0 1 2 1 1 3 1 0 0 1 1 2 0 0 1 4 0 0 22 0 2483.3173 Q53Z07;P32969;H0Y9V9;D6RAN4;E7ESE0;B4E1M5;B4DLV8 Q53Z07 94 115 RPL9 60S ribosomal protein L9 yes no 3 8.0081E-39 135.23 4 2 0.55322 0.89222 16.489 5 Median 0.6772 0.93795 23.254 3 0 Median 0.55132 0.88214 1.6063 2 0 Median 520720000 288390000 232330000 437440000 232480000 204960000 83278000 55904000 27374000 11537 1314 11848 41422;41423;41424;41425;41426;41427 62094;62095;62096;62097;62098;62099;62100;62101 62099 8 SYCAEIAHNVSSK VHNVKELEVLLMCNKSYCAEIAHNVSSKNR NKSYCAEIAHNVSSKNRKAIVERAAQLAIR K S Y S K N 2 0 1 0 1 0 1 0 1 1 0 1 0 0 0 3 0 0 1 1 0 0 13 0 1464.6667 D3YTB1;A0A024R2G7;F8W727;P62910 D3YTB1 94 106 RPL32 60S ribosomal protein L32 yes no 2;3 9.521E-65 250.51 12 4 0.76283 1.0029 18.52 14 Median 0.78247 1.0277 10.119 10 0 Median 0.48586 0.78848 5.8196 4 0 Linear 1895600000 1087900000 807740000 1698700000 955300000 743410000 196910000 132580000 64326000 11538 85 11849 41428;41429;41430;41431;41432;41433;41434;41435;41436;41437;41438;41439;41440;41441;41442;41443 62102;62103;62104;62105;62106;62107;62108;62109;62110;62111;62112;62113;62114;62115;62116;62117;62118;62119;62120;62121;62122;62123;62124;62125;62126;62127;62128 62104 27 SYCCEHDLGAASVR EHQDGTAFSCTPDGRSYCCEHDLGAASVRS RSYCCEHDLGAASVRSTKTEKPPPEPGKPK R S Y V R S 2 1 0 1 2 0 1 1 1 0 1 0 0 0 0 2 0 0 1 1 0 0 14 0 1623.677 O96028 O96028 1321 1334 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 2 2.2818E-05 118.48 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11539 1228 11850 41444;41445;41446 62129;62130;62131 62129 3 SYCSNLVR MHFGAITCAMGIRFKSYCSNLVRTLMVDPS AMGIRFKSYCSNLVRTLMVDPSQEVQENYN K S Y V R T 0 1 1 0 1 0 0 0 0 0 1 0 0 0 0 2 0 0 1 1 0 0 8 0 997.46511 Q9Y5B9;Q0VGA3 Q9Y5B9 281 288 SUPT16H FACT complex subunit SPT16 yes no 2 0.003827 101.64 4 2 0.66319 0.90488 9.8415 6 Median 0.72167 0.97898 9.2608 4 0 Median 0.55971 0.83342 1.7387 2 0 Median 179330000 105740000 73593000 149160000 87118000 62043000 30173000 18623000 11550000 11540 1829 11851 41447;41448;41449;41450;41451;41452 62132;62133;62134;62135;62136;62137;62138;62139;62140 62135 9 SYDDAESLK EINNIIKIVGLQYKKSYDDAESLKTLRYGK GLQYKKSYDDAESLKTLRYGKIMIMTDQDQ K S Y L K T 1 0 0 2 0 0 1 0 0 0 1 1 0 0 0 2 0 0 1 0 0 0 9 0 1026.4506 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 514 522 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.020768 51.949 1 1 0.76487 1.0562 1.7788 2 Median 0.85661 1.0696 NaN 1 0 Median 0.68295 1.043 NaN 1 0 Median 56707000 33432000 23275000 36316000 21087000 15229000 20391000 12345000 8046100 11541 1437 11852 41453;41454 62141;62142 62142 2 SYEALVQHVIEDHER EESSIHCKRCLFMPKSYEALVQHVIEDHER SYEALVQHVIEDHERIGYQVTAMIGHTNVV K S Y E R I 1 1 0 1 0 1 3 0 2 1 1 0 0 0 0 1 0 0 1 2 0 0 15 0 1823.8802 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 232 246 ADNP Activity-dependent neuroprotector homeobox protein yes no 3 3.5873E-06 99.069 3 2 0.85944 1.1461 30.304 5 Median 0.76756 1.0277 18.347 3 0 Median 1.0309 1.6127 5.7827 2 0 Median 142410000 77144000 65262000 84174000 46895000 37278000 58232000 30248000 27983000 11542 729 11853 41455;41456;41457;41458;41459 62143;62144;62145;62146;62147;62148;62149;62150;62151;62152;62153 62153 11 SYELPDGQVITIGNER EQEMATAASSSSLEKSYELPDGQVITIGNE YELPDGQVITIGNERFRCPEALFQPSFLGM K S Y E R F 0 1 1 1 0 1 2 2 0 2 1 0 0 0 1 1 1 0 1 1 0 0 16 0 1789.8846 B7Z6P1;P68133;P68032;A8K3K1;D2JYH4;P63267;P62736;B3KW67;Q13707;B4DUI8;K4EQ44;K4EP00;K4ENJ5;G8FSY7;A0A173GMX0;Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;B3KUD3;Q96DE1;Q96FU6;Q6S8J3;A5A3E0;A4UCT3;F1BXA6;A5GZ75;B3KPP5;Q9BYX7;P63261;B4E3A4;B4DVQ0;Q562R1;V9HVZ7 Q53GK6 239 254 ACTA1;ACTC1;ACTA2;ACTG2;ACTB;PS1TP5BP1;ACTG1;POTEE;POTEF;POTEKP;ACTBL2;HEL-176 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Beta-actin-like protein 2 no no 2 1.2965E-29 177.36 18 6 0.89455 1.2263 87.333 13 Median 0.77416 1.0671 13.458 8 0 Median 3.7274 5.7244 25.306 5 0 Median 12690000000 6214500000 6475800000 9902400000 5528900000 4373400000 2788000000 685590000 2102400000 11543 1388;1420;914;1859;1547 11854 41460;41461;41462;41463;41464;41465;41466;41467;41468;41469;41470;41471;41472;41473;41474;41475;41476;41477;41478;41479;41480;41481;41482;41483 62154;62155;62156;62157;62158;62159;62160;62161;62162;62163;62164;62165;62166;62167;62168;62169;62170;62171;62172;62173;62174;62175;62176;62177;62178;62179;62180;62181;62182;62183;62184;62185;62186;62187;62188;62189;62190;62191;62192;62193;62194;62195;62196;62197;62198;62199;62200;62201;62202;62203 62184 50 SYESQIEVMAAEVAK TSYKQQLEAVNEAIKSYESQIEVMAAEVAK SYESQIEVMAAEVAKNKESVNKAQEEVTKQ K S Y A K N 3 0 0 0 0 1 3 0 0 1 0 1 1 0 0 2 0 0 1 2 0 0 15 0 1653.792 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27 A0A024R158 849 863 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 3.697E-41 213.63 15 4 0.67891 0.91768 6.661 10 Median 0.76005 0.94556 7.818 6 0 Median 0.56631 0.90319 3.5743 4 0 Median 346260000 216860000 129390000 81795000 49662000 32133000 264460000 167200000 97260000 11544 50 11855;11856 41484;41485;41486;41487;41488;41489;41490;41491;41492;41493;41494;41495;41496;41497;41498;41499;41500;41501;41502 62204;62205;62206;62207;62208;62209;62210;62211;62212;62213;62214;62215;62216;62217;62218;62219;62220;62221;62222;62223;62224;62225;62226;62227;62228;62229;62230;62231;62232 62205 10 29 SYGEEDIPFYSSSTGK RSNMFFGLTPLYGVRSYGEEDIPFYSSSTG YGEEDIPFYSSSTGKKRGKRSAEGQVDGAD R S Y G K K 0 0 0 1 0 0 2 2 0 1 0 1 0 1 1 4 1 0 2 0 0 0 16 0 1765.7683 Q03164 Q03164 2639 2654 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 3.5018E-18 158.25 4 0.95905 1.2013 13.165 4 Median 0.95905 1.2013 13.165 4 0 Median NaN NaN NaN 0 0 Median 18525000 9449100 9075600 18525000 9449100 9075600 0 0 0 11545 1438 11857 41503;41504;41505;41506 62233;62234;62235;62236 62234 4 SYGLGSEQR QSQSVKQLLPSGNGRSYGLGSEQRSQAPAR PSGNGRSYGLGSEQRSQAPARYSLQSANAS R S Y Q R S 0 1 0 0 0 1 1 2 0 0 1 0 0 0 0 2 0 0 1 0 0 0 9 0 995.46722 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 377 385 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.012788 59.245 1 0.93431 1.2791 NaN 1 Median 0.93431 1.2791 NaN 1 0 Median NaN NaN NaN 0 0 Median 9735200 4737900 4997300 9735200 4737900 4997300 0 0 0 11546 729 11858 41507 62237;62238 62237 2 SYGPAPGAGHVQEESNLSLQALESR ELPTCMYRLPNVHGRSYGPAPGAGHVQEES VQEESNLSLQALESRQDDILKRLYELKAAV R S Y S R Q 3 1 1 0 0 2 3 3 1 0 3 0 0 0 2 4 0 0 1 1 0 0 25 0 2596.2518 B2R7M3;A0A024QZY1;Q13155 B2R7M3 34 58 JTV1;AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 yes no 3 1.7083E-16 119.69 4 2 0.51735 0.69273 66.997 5 Median 0.51386 0.69001 4.9697 4 0 Median 2.2427 3.1307 NaN 1 0 Median 74611000 45087000 29524000 61326000 41844000 19482000 13285000 3242800 10042000 11547 23 11859 41508;41509;41510;41511;41512;41513 62239;62240;62241;62242;62243;62244;62245;62246;62247;62248;62249;62250;62251;62252 62240 14 SYIDRDSEYLLQENEPDGTLDQK KLINQEKKMFRIRNRSYIDRDSEYLLQENE YLLQENEPDGTLDQKLLEDLQKKKNDLRYI R S Y Q K L 0 1 1 4 0 2 3 1 0 1 3 1 0 0 1 2 1 0 2 0 0 0 23 1 2727.2511 E7EWK3;B7Z8P5;Q9H2U1 E7EWK3 75 97 DHX36 ATP-dependent RNA helicase DHX36 yes no 3 0.00022913 59.996 2 0.48884 0.63617 39.774 2 Median 0.48884 0.63617 39.774 2 0 Median NaN NaN NaN 0 0 Median 5965700 3553200 2412500 5965700 3553200 2412500 0 0 0 11548 919 11860 41514;41515 62253;62254 62253 2 SYIEGYVPSQADVAVFEAVSSPPPADLCHALR SPAGLQVLNDYLADKSYIEGYVPSQADVAV AVSSPPPADLCHALRWYNHIKSYEKEKASL K S Y L R W 5 1 0 2 1 1 2 1 1 1 2 0 0 1 4 4 0 0 2 4 0 0 32 0 3444.666 A0A024R3W7;P24534;F2Z2G2;C9JZW3 A0A024R3W7 23 54 EEF1B2 Elongation factor 1-beta yes no 3 1.5499E-20 101.75 2 0.38196 0.53411 5.7323 2 Median 0.38196 0.53411 5.7323 2 0 Median NaN NaN NaN 0 0 Median 9568400 6621900 2946500 9568400 6621900 2946500 0 0 0 11549 109 11861 41516;41517 62255;62256;62257;62258;62259 62258 5 SYLAVR KKVKVQKVQSVSQNKSYLAVRLKDQDLRDS KVQSVSQNKSYLAVRLKDQDLRDSRQQAAQ K S Y V R L 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 6 0 707.39662 A0A024QZW2;Q9UMY1 A0A024QZW2 171 176 NOL7 Nucleolar protein 7 yes no 2 0.05061 99.228 1 0.90154 1.2079 NaN 1 Median 0.90154 1.2079 NaN 1 0 Median NaN NaN NaN 0 0 Median 13747000 7287400 6459400 13747000 7287400 6459400 0 0 0 11550 21 11862 41518 62260 62260 1 SYLEFSEDSVQVPR FRIYGETPEACRQARSYLEFSEDSVQVPRN RSYLEFSEDSVQVPRNLVGKVIGKNGKVIQ R S Y P R N 0 1 0 1 0 1 2 0 0 0 1 0 0 1 1 3 0 0 1 2 0 0 14 0 1654.7839 P51116 P51116 287 300 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 2 5.4914E-10 150.09 3 2 0.8565 1.2229 7.5223 4 Median 0.86689 1.1682 7.7473 2 0 Median 0.85366 1.2686 6.453 2 0 Median 50180000 26072000 24108000 18145000 9937000 8207900 32035000 16135000 15901000 11551 1360 11863 41519;41520;41521;41522;41523 62261;62262;62263;62264;62265;62266;62267;62268;62269;62270 62262 10 SYLNIR INEETALAEVNLKKKSYLNIRTHPVATSFA LAEVNLKKKSYLNIRTHPVATSFAVFDDTL K S Y I R T 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 6 0 764.41809 Q96B26;Q5JXM0 Q96B26 185 190 EXOSC8;DKFZp564C0482 Exosome complex component RRP43 yes no 2 0.047837 72.62 1 0.8602 1.1402 NaN 1 Median 0.8602 1.1402 NaN 1 0 Median NaN NaN NaN 0 0 Median 12591000 7245000 5346500 12591000 7245000 5346500 0 0 0 11552 1682 11864 41524 62271 62271 1 SYLSGGAGAAGGGGADPGNK ______________________________ GAGAAGGGGADPGNKKWEQKQVQIKTLEGE K S Y N K K 4 0 1 1 0 0 0 8 0 0 1 1 0 0 1 2 0 0 1 0 0 0 20 0 1662.7598 H0YJV7;P25490;H0YJU4 H0YJV7 13 32 YY1 Transcriptional repressor protein YY1 yes no 2 7.964E-21 109.1 4 2 0.62112 0.79268 26.412 6 Median 0.60306 0.7714 8.112 4 0 Median 0.81812 1.2278 9.9855 2 0 Median 49626000 29829000 19797000 29358000 18832000 10526000 20268000 10997000 9271500 11553 1102 11865 41525;41526;41527;41528;41529;41530 62272;62273;62274;62275;62276;62277;62278;62279;62280;62281;62282;62283;62284 62277 13 SYLYQILQGIVFCHSR DSIPPGQYMDSSLVKSYLYQILQGIVFCHS YLYQILQGIVFCHSRRVLHRDLKPQNLLID K S Y S R R 0 1 0 0 1 2 0 1 1 2 2 0 0 1 0 2 0 0 2 1 0 0 16 0 1983.0037 A0A024QZP7;P06493;A0A087WZZ9;I6L9I5;E5RIU6 A0A024QZP7 107 122 CDC2;CDK1 Cyclin-dependent kinase 1 yes no 3 0.0013107 72.662 2 0.69249 0.94326 16.79 2 Median 0.69249 0.94326 16.79 2 0 Median NaN NaN NaN 0 0 Median 22116000 11906000 10210000 22116000 11906000 10210000 0 0 0 11554 18 11866 41531;41532 62285;62286;62287 62286 3 SYNDELQFLEK ______________________________ ______________________________ R S Y E K I 0 0 1 1 0 1 2 0 0 0 2 1 0 1 0 1 0 0 1 0 0 0 11 0 1384.6511 Q9Y3I0;B4DNA0;B4DNG5;B4DXF1 Q9Y3I0 4 14 RTCB tRNA-splicing ligase RtcB homolog yes no 2 3.2637E-07 147.73 5 2 0.72702 0.91435 17.024 7 Median 0.73495 0.9199 18.649 5 0 Median 0.57537 0.85804 6.5095 2 0 Median 89314000 51523000 37790000 73848000 42664000 31184000 15465000 8859200 6606200 11555 1819 11867 41533;41534;41535;41536;41537;41538;41539 62288;62289;62290;62291;62292;62293;62294;62295;62296;62297;62298;62299 62288 12 SYNQEHSQSFTFDDAQQEDR AVETGEEDVIMEALRSYNQEHSQSFTFDDA HSQSFTFDDAQQEDRKSVRILSRDRNCLDP R S Y D R K 1 1 1 3 0 4 2 0 1 0 0 0 0 2 0 3 1 0 1 0 0 0 20 0 2430.9949 E9PI04;Q9NPQ8 E9PI04 24 43 RIC8A Synembryn-A yes no 3 0.0096615 83.666 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11556 1031 11868 41540 62300 62300 1 SYQSFQTFR NLIQSTLALSDSQMKSYQSFQTFRLYREYK SDSQMKSYQSFQTFRLYREYKDHVLVKAFM K S Y F R L 0 1 0 0 0 2 0 0 0 0 0 0 0 2 0 2 1 0 1 0 0 0 9 0 1162.5407 Q6AHZ7;Q12789;Q6AWA4;I3L1Z3 Q6AHZ7 1446 1454 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.0027589 81.296 1 1 0.96713 1.2754 48.705 2 Median 0.6759 0.90381 NaN 1 0 Median 1.3838 1.7998 NaN 1 0 Median 11375000 6679400 4696100 7352300 4981500 2370700 4023200 1697800 2325300 11557 1457 11869 41541;41542 62301;62302 62301 2 SYSLLFR VSSNEFEPSNSHMVKSYSLLFRVTRPGRRE PSNSHMVKSYSLLFRVTRPGRREFNGMING K S Y F R V 0 1 0 0 0 0 0 0 0 0 2 0 0 1 0 2 0 0 1 0 0 0 7 0 884.4756 J3QQW9;Q15022;A8K1U9 J3QQW9 224 230 SUZ12 Polycomb protein SUZ12 yes no 2 0.023393 86.086 4 1 0.85699 1.2027 10.989 4 Median 0.83768 1.1482 12.844 3 0 Median 0.87675 1.2599 NaN 1 0 Median 43556000 23116000 20440000 32515000 17411000 15103000 11041000 5704400 5336600 11558 1143 11870 41543;41544;41545;41546;41547 62303;62304;62305;62306;62307 62305 5 SYSPSDLVELVAR RGTGLYELWKSGRYKSYSPSDLVELVARIL YKSYSPSDLVELVARILALVPPWTRVYRVQ K S Y A R I 1 1 0 1 0 0 1 0 0 0 2 0 0 0 1 3 0 0 1 2 0 0 13 0 1434.7355 B4DXV1;B4DPB7;B4DKA4;Q9H9T3 B4DXV1 210 222 ELP3 Elongator complex protein 3 yes no 2 0.0011282 62.303 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1473400 1473400 0 1473400 1473400 0 0 0 0 11559 817 11871 41548 62308 62308 1 SYSSGGEDGYVR HFGPINSVAFHPDGKSYSSGGEDGYVRIHY DGKSYSSGGEDGYVRIHYFDPQYFEFEFEA K S Y V R I 0 1 0 1 0 0 1 3 0 0 0 0 0 0 0 3 0 0 2 1 0 0 12 0 1275.5368 Q9P1D9;Q5U0F4;Q53HU7;Q13347 Q9P1D9 47 58 EIF3I Eukaryotic translation initiation factor 3 subunit I yes no 2 2.5616E-07 96.342 3 2 0.37459 0.50741 151.36 3 Median 0.36211 0.48607 6.0777 2 0 Median 5.1817 6.6801 NaN 1 0 Median 20340000 11039000 9301000 14746000 10378000 4368700 5593300 660920 4932400 11560 1468 11872 41549;41550;41551;41552;41553 62309;62310;62311;62312;62313;62314;62315 62310 7 SYTIEINHRPLLEK IVFSEDDKNDMDITKSYTIEINHRPLLEKR KSYTIEINHRPLLEKRDCHLVPLAGTSETI K S Y E K R 0 1 1 0 0 0 2 0 1 2 2 1 0 0 1 1 1 0 1 0 0 0 14 1 1711.9257 Q8NG31;E9PPJ1 Q8NG31 903 916 CASC5 Protein CASC5 yes no 3 0.0047519 50.088 2 0.48982 0.65074 12.976 2 Median 0.48982 0.65074 12.976 2 0 Median NaN NaN NaN 0 0 Median 20096000 12171000 7924600 20096000 12171000 7924600 0 0 0 11561 1656 11873 41554;41555 62316;62317 62317 2 SYVDLYVK KVMFNGKKLPVNGFRSYVDLYVKDKLDETG LPVNGFRSYVDLYVKDKLDETGVALKVIHE R S Y V K D 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 1 0 0 2 2 0 0 8 0 985.51205 Q71UH4;Q02880;E9PCY5 Q71UH4 262 269 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.047389 44.395 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3079700 3079700 0 0 0 0 3079700 3079700 0 11562 1437 11874 41556 62318 62318 1 SYVDMYLK KVFLNGNKLPVKGFRSYVDMYLKDKLDETG LPVKGFRSYVDMYLKDKLDETGNSLKVIHE R S Y L K D 0 0 0 1 0 0 0 0 0 0 1 1 1 0 0 1 0 0 2 1 0 0 8 0 1017.4841 P11388 P11388 269 276 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0081338 65.252 3 2 0.81856 1.1533 7.5683 5 Median 0.90872 1.1533 9.8936 3 0 Median 0.72945 1.1515 4.9048 2 0 Median 448880000 251990000 196890000 64530000 30878000 33652000 384350000 221110000 163240000 11563 1256 11875;11876 41557;41558;41559;41560;41561 62319;62320;62321;62322;62323;62324;62325 62323 520 7 SYVDPSTDER NKDTHDQLSEPSEVRSYVDPSTDERLSYTQ PSEVRSYVDPSTDERLSYTQLLRRCRRDDG R S Y E R L 0 1 0 2 0 0 1 0 0 0 0 0 0 0 1 2 1 0 1 1 0 0 10 0 1167.5044 Q15149;D3DWL0;Q96IE3 Q15149 3982 3991 PLEC;PLEC1 Plectin yes no 2 4.6849E-05 136.57 3 1 0.76538 1.0182 64.634 4 Median 0.73225 0.97264 8.5569 3 0 Median 2.3508 3.5303 NaN 1 0 Median 55723000 31080000 24643000 48420000 28835000 19586000 7302700 2245500 5057100 11564 1507 11877 41562;41563;41564;41565 62326;62327;62328;62329;62330;62331;62332;62333 62328 8 TAAENDFVTLKK VEDYKKKYEDEINKRTAAENDFVTLKKDVD NKRTAAENDFVTLKKDVDNAYMIKVELQSK R T A K K D 2 0 1 1 0 0 1 0 0 0 1 2 0 1 0 0 2 0 0 1 0 0 12 1 1335.7034 CON__P35908;P35908 CON__P35908 282 293 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 3 0.024388 30.567 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18973000 18973000 0 18973000 18973000 0 0 0 0 + 11565 964 11878 41566 62334 62334 1 TAAENEFVTLK VEDFKNKYEDEINKRTAAENEFVTLKKDVD INKRTAAENEFVTLKKDVDAAYMNKVELQA R T A L K K 2 0 1 0 0 0 2 0 0 0 1 1 0 1 0 0 2 0 0 1 0 0 11 0 1221.6241 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;B4DRY0;CON__P04259 B4DRR0 232 242 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 0.0041141 68.657 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4231100 4231100 0 4231100 4231100 0 0 0 0 + 11566 459;953 11879 41567 62335 62335 1 TAAENEFVTLKK VEDFKNKYEDEINKRTAAENEFVTLKKDVD NKRTAAENEFVTLKKDVDAAYMNKVELQAK R T A K K D 2 0 1 0 0 0 2 0 0 0 1 2 0 1 0 0 2 0 0 1 0 0 12 1 1349.7191 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;B4DRY0;CON__P04259 B4DRR0 232 243 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 0.0098311 55.718 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9133400 9133400 0 0 0 0 9133400 9133400 0 + 11567 459;953 11880 41568;41569 62336;62337 62336 2 TAAENEFVVLK VEDFKNKYEDEINHRTAAENEFVVLKKDVD INHRTAAENEFVVLKKDVDAAYMSKVELEA R T A L K K 2 0 1 0 0 0 2 0 0 0 1 1 0 1 0 0 1 0 0 2 0 0 11 0 1219.6449 CON__P08729;B4DXK4;CON__Q3KNV1;P08729;B3KY79;CON__Q14CN4-1;CON__Q6IME9;Q14CN4 CON__Q3KNV1 188 198 KRT7;KRT72 Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 72 no no 2 0.016323 52.549 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8246500 0 8246500 0 0 0 8246500 0 8246500 + 11568 968;957;967 11881 41570 62338 62338 1 TAAENEFVVLKK VEDFKNKYEDEINHRTAAENEFVVLKKDVD NHRTAAENEFVVLKKDVDAAYMSKVELEAK R T A K K D 2 0 1 0 0 0 2 0 0 0 1 2 0 1 0 0 1 0 0 2 0 0 12 1 1347.7398 CON__P08729;B4DXK4;CON__Q3KNV1;P08729;B3KY79;CON__Q14CN4-1;CON__Q6IME9;Q14CN4 CON__Q3KNV1 188 199 KRT7;KRT72 Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 72 no no 2 0.023321 89.561 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 11569 968;957;967 11882 41571 62339 62339 1 TAAFALPVLER LGKDICACAATGTGKTAAFALPVLERLIYK GTGKTAAFALPVLERLIYKPRQAPVTRVLV K T A E R L 3 1 0 0 0 0 1 0 0 0 2 0 0 1 1 0 1 0 0 1 0 0 11 0 1186.671 B7Z6D5;B3GQE6;Q96GQ7;A0A087X059 B7Z6D5 238 248 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 1.5134E-08 130.94 5 2 0.77975 1.0639 18.757 5 Median 0.82857 1.1325 19.204 3 0 Median 0.60162 0.96754 1.9128 2 0 Median 302970000 196450000 106520000 201120000 134850000 66269000 101850000 61594000 40256000 11570 750 11883 41572;41573;41574;41575;41576;41577;41578 62340;62341;62342;62343;62344;62345;62346;62347;62348;62349;62350 62344 11 TAAGEYDSVSESEDEEMLEIR IMKKLEELEKEEELRTAAGEYDSVSESEDE DSVSESEDEEMLEIRQLAKQIREKKKLKIL R T A I R Q 2 1 0 2 0 0 6 1 0 1 1 0 1 0 0 3 1 0 1 1 0 0 21 0 2359.0009 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;B4DHR2 Q53GS0 461 481 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 5.119E-23 102.63 2 0.44998 0.67814 0.95267 2 Median NaN NaN NaN 0 0 Median 0.44998 0.67814 0.95267 2 0 Median 32813000 22875000 9937800 0 0 0 32813000 22875000 9937800 11571 975 11884 41579;41580 62351;62352;62353 62351 353 3 TAANLVVETGQDGVQIR AKEFTNHWWNELFNKTAANLVVETGQDGVQ ANLVVETGQDGVQIRSLSKETTRYNHPKPN K T A I R S 2 1 1 1 0 2 1 2 0 1 1 0 0 0 0 0 2 0 0 3 0 0 17 0 1769.9272 Q5T3I0;A8KAG1;A0A0A0MRK1;E9PAV9;E9PPY4;F2Z3C6;B4DVU2 Q5T3I0 72 88 GPATCH4 G patch domain-containing protein 4 yes no 2 6.2986E-72 239.38 4 3 0.85249 1.2012 7.1001 6 Median 0.8807 1.1987 8.8236 4 0 Median 0.74419 1.23 4.1318 2 0 Median 821630000 454790000 366840000 126110000 69396000 56714000 695520000 385390000 310130000 11572 1568 11885 41581;41582;41583;41584;41585;41586;41587 62354;62355;62356;62357;62358;62359;62360;62361;62362;62363;62364;62365 62355 12 TAAPSPSLLYK SWASDHNYNAVKPEKTAAPSPSLLYKSTKE KPEKTAAPSPSLLYKSTKEDRRSEEKAAAM K T A Y K S 2 0 0 0 0 0 0 0 0 0 2 1 0 0 2 2 1 0 1 0 0 0 11 0 1146.6285 Q9BTC0 Q9BTC0 519 529 DIDO1 Death-inducer obliterator 1 yes yes 2 0.01354 45.161 1 2 0.51104 0.75593 16.953 3 Median 0.78467 0.99509 NaN 1 0 Median 0.49584 0.74302 2.4357 2 0 Median 27533000 17176000 10357000 7465900 3951900 3513900 20067000 13224000 6843300 11573 1713 11886 41588;41589;41590 62366;62367;62368 62367 3 TAAPSVRPEK ______________________________ RGAGRTAAPSVRPEKRRSEPELEPEPEPEP R T A E K R 2 1 0 0 0 0 1 0 0 0 0 1 0 0 2 1 1 0 0 1 0 0 10 1 1054.5771 B2RDN4;Q14137;A8K3R2;A0A075B729 B2RDN4 10 19 BOP1 Ribosome biogenesis protein BOP1 yes no 2;3 0.002418 104.42 4 2 0.83967 1.124 11.319 6 Median 0.91865 1.2132 9.3234 4 0 Median 0.61942 1.0296 2.0963 2 0 Median 142370000 78836000 63535000 76172000 38533000 37639000 66198000 40302000 25896000 11574 738 11887 41591;41592;41593;41594;41595;41596 62369;62370;62371;62372;62373;62374;62375;62376;62377 62375 9 TAAPTTASAAPQGPLR PEGRTVAFPSTHPPRTAAPTTASAAPQGPL AAPTTASAAPQGPLRGRPPIATFSANPEAK R T A L R G 5 1 0 0 0 1 0 1 0 0 1 0 0 0 3 1 3 0 0 0 0 0 16 0 1508.7947 Q96L91;A7E2D7 Q96L91 1488 1503 EP400 E1A-binding protein p400 yes no 2 0.007375 45.257 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1387700 1387700 0 1387700 1387700 0 0 0 0 11575 1692 11888 41597 62378 62378 1 TAASFDECSTAGVFLSTLHCQDYR SEADRKCEIDPMFQKTAASFDECSTAGVFL TAGVFLSTLHCQDYRSELLFPSDVQTLSTG K T A Y R S 3 1 0 2 2 1 1 1 1 0 2 0 0 2 0 3 3 0 1 1 0 0 24 0 2735.1956 Q15003;B4DRG7;E9PHA2;A8K4T8;C9J470;C9JZP1 Q15003 248 271 NCAPH Condensin complex subunit 2 yes no 3 2.8105E-48 169.7 5 2 0.65284 0.88533 26.563 6 Median 0.68294 0.93377 6.1729 4 0 Median 0.35492 0.55778 4.3755 2 0 Median 258460000 168790000 89663000 196190000 122380000 73810000 62264000 46410000 15854000 11576 1500 11889 41598;41599;41600;41601;41602;41603;41604 62379;62380;62381;62382;62383;62384;62385;62386;62387 62381 9 TAASGIPYHSEVPVSLK CVINNQEMGFYKDAKTAASGIPYHSEVPVS ASGIPYHSEVPVSLKEAVCEVALDYKKKKH K T A L K E 2 0 0 0 0 0 1 1 1 1 1 1 0 0 2 3 1 0 1 2 0 0 17 0 1754.9203 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;B4DIF8 B2ZZ89 2242 2258 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 7.1436E-06 112.03 5 0.96083 1.1801 15.99 5 Median 0.96083 1.1801 15.99 5 0 Median NaN NaN NaN 0 0 Median 73980000 37908000 36071000 73980000 37908000 36071000 0 0 0 11577 346 11890 41605;41606;41607;41608;41609 62388;62389;62390;62391;62392;62393 62393 5 TACYDIDVEVDDPLK VINHVISVDPNDQKKTACYDIDVEVDDPLK TACYDIDVEVDDPLKAQMSNFLASTTNQQE K T A L K A 1 0 0 4 1 0 1 0 0 1 1 1 0 0 1 0 1 0 1 2 0 0 15 0 1751.7924 J3KMX2;B9EGA3;Q92925;J3QWB6 J3KMX2 328 342 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes no 2 0.0017766 59.57 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11578 927 11891 41610 62394 62394 1 TADSSSSEDEEEYVVEK ______________________________ DSSSSEDEEEYVVEKVLDRRVVKGQVEYLL R T A E K V 1 0 0 2 0 0 5 0 0 0 0 1 0 0 0 4 1 0 1 2 0 0 17 0 1902.7854 V9HWG0;P45973;Q6I9T7;F8VNY3 V9HWG0 8 24 HEL25;CBX5 Chromobox protein homolog 5 yes no 2 0.026482 27.845 1 0.37094 0.49135 NaN 1 Median NaN NaN NaN 0 0 Median 0.37094 0.49135 NaN 1 0 Median 2931500 2124700 806790 0 0 0 2931500 2124700 806790 11579 1341 11892 41611 62395 62395 1 TAEDYSVDENGQR GGQNISMGYFKNEEKTAEDYSVDENGQRWF EKTAEDYSVDENGQRWFCTGDIGEFHPDGC K T A Q R W 1 1 1 2 0 1 2 1 0 0 0 0 0 0 0 1 1 0 1 1 0 0 13 0 1482.6223 B4DH39;Q8TAF6;O60488;H0Y9A0 B4DH39 476 488 FACL4;ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 2 2.0347E-08 104.52 1 0.48951 0.67017 NaN 1 Median 0.48951 0.67017 NaN 1 0 Median NaN NaN NaN 0 0 Median 2592100 1651400 940680 2592100 1651400 940680 0 0 0 11580 806 11893 41612 62396 62396 1 TAEEEELAEEK ETDSEEEQEEVNEKKTAEEEELAEEKKKAL NEKKTAEEEELAEEKKKALNVVQSVLQINL K T A E K K 2 0 0 0 0 0 6 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 11 0 1276.5671 F5H101;A0A024R250;Q76FK4;F8WE42;B4DM91;Q6AI50;A6H8Z4 F5H101 902 912 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 2 0.0462 42.336 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2532800 2532800 0 0 0 0 2532800 2532800 0 11581 80 11894 41613 62397 62397 1 TAEEENPEHVEIQK AEIYEQEYIKLNQQKTAEEENPEHVEIQKM KTAEEENPEHVEIQKMMDSLFLKLDALSNF K T A Q K M 1 0 1 0 0 1 5 0 1 1 0 1 0 0 1 0 1 0 0 1 0 0 14 0 1651.7689 B3KPV5;O00566 B3KPV5 485 498 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 2;3 6.4083E-61 239.48 9 3 0.95617 1.2055 11.825 10 Median 1.0028 1.2545 11.86 8 0 Median 0.72035 1.0863 0.64336 2 0 Median 198440000 96804000 101640000 158800000 74156000 84647000 39641000 22649000 16993000 11582 767 11895 41614;41615;41616;41617;41618;41619;41620;41621;41622;41623;41624;41625 62398;62399;62400;62401;62402;62403;62404;62405;62406;62407;62408;62409;62410;62411;62412;62413;62414;62415 62398 18 TAEEVAALIR VWAGQKRLGQLAKWKTAEEVAALIRSLPVE LAKWKTAEEVAALIRSLPVEEQPKQIIVTR K T A I R S 3 1 0 0 0 0 2 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1071.5924 Q6P2Q9;B4DK16;Q6JH02;Q6JH03 Q6P2Q9 1841 1850 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0083926 99.136 2 1 1.9291 2.5026 NaN 1 Median NaN NaN NaN 0 0 Median 1.9291 2.5026 NaN 1 0 Median 9276500 4402000 4874500 6655000 3509200 3145800 2621400 892750 1728700 11583 1592 11896 41626;41627;41628 62416;62417;62418;62419 62417 4 TAELQEELSGEK KETELQREMHEMAQKTAELQEELSGEKNRL AQKTAELQEELSGEKNRLAGELQLLLEEIK K T A E K N 1 0 0 0 0 1 4 1 0 0 2 1 0 0 0 1 1 0 0 0 0 0 12 0 1332.6409 P49454;Q9UHT7;A0A087WTY4 P49454 2728 2739 CENPF Centromere protein F yes no 2 0.0022885 64.297 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5788800 0 5788800 5788800 0 5788800 0 0 0 11584 1351 11897 41629 62420 62420 1 TAEPAQPSSASGSGNSDDAIR KSILEQAKRELQVQKTAEPAQPSSASGSGN PSSASGSGNSDDAIRSILQQARREMEAQQA K T A I R S 4 1 1 2 0 1 1 2 0 1 0 0 0 0 2 5 1 0 0 0 0 0 21 0 2016.8985 P39880 P39880 687 707 CUX1 Homeobox protein cut-like 1 yes yes 2 0.042329 22.097 1 0.64807 0.82349 NaN 1 Median NaN NaN NaN 0 0 Median 0.64807 0.82349 NaN 1 0 Median 4750600 2460300 2290300 0 0 0 4750600 2460300 2290300 11585 1331 11898 41630 62421 62421 1 TAEPLLDK VGRPPGPYTRKMIQKTAEPLLDKESISENP TRKMIQKTAEPLLDKESISENPTLDLPCSI K T A D K E 1 0 0 1 0 0 1 0 0 0 2 1 0 0 1 0 1 0 0 0 0 0 8 0 885.48075 B4DZG1;Q9Y483;Q96G26 B4DZG1 315 322 MTF2 Metal-response element-binding transcription factor 2 yes no 2 0.025449 53.968 2 0.81789 1.2159 1.5834 2 Median NaN NaN NaN 0 0 Median 0.81789 1.2159 1.5834 2 0 Median 14596000 7789000 6806900 0 0 0 14596000 7789000 6806900 11586 878 11899 41631;41632 62422;62423 62422 2 TAESQTPTPSATSFFSGK SEESSHYSTEKESEKTAESQTPTPSATSFF SQTPTPSATSFFSGKSPVTTLLECMHKLGN K T A G K S 2 0 0 0 0 1 1 1 0 0 0 1 0 2 2 4 4 0 0 0 0 0 18 0 1842.8636 Q59EC0;D3DV75;H0YCK3;A0A024DAK3;P55265;B7Z8Y3 Q59EC0 614 631 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 2.6159E-50 193.45 4 0.42212 0.55108 7.3099 3 Median 0.42212 0.55108 7.3099 3 0 Median NaN NaN NaN 0 0 Median 19948000 12955000 6993100 19948000 12955000 6993100 0 0 0 11587 1552 11900 41633;41634;41635;41636 62424;62425;62426;62427;62428;62429;62430 62427 7 TAFDDAIAELDTLNEDSYK YEIQNAPEQACHLAKTAFDDAIAELDTLNE DAIAELDTLNEDSYKDSTLIMQLLRDNLTL K T A Y K D 3 0 1 4 0 0 2 0 0 1 2 1 0 1 0 1 2 0 1 0 0 0 19 0 2129.9641 B4DE78;B4DHC4;B3KNB4;P61981 B4DE78 159 177 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes no 2 1.3772E-50 194.59 4 0.67097 0.88847 20.957 3 Median 0.67097 0.88847 20.957 3 0 Median NaN NaN NaN 0 0 Median 14546000 10328000 4217300 14546000 10328000 4217300 0 0 0 11588 758 11901 41637;41638;41639;41640 62431;62432;62433;62434;62435;62436 62431 6 TAFDEAIAELDTLNEDSYK YEILNNPELACTLAKTAFDEAIAELDTLNE EAIAELDTLNEDSYKDSTLIMQLLRDNLTL K T A Y K D 3 0 1 3 0 0 3 0 0 1 2 1 0 1 0 1 2 0 1 0 0 0 19 0 2143.9797 P27348;B4DMT8;Q53S41;B4DY04 P27348 194 212 YWHAQ 14-3-3 protein theta yes no 2 1.1125E-18 143.46 2 0.45172 0.58216 2.3695 2 Median 0.45172 0.58216 2.3695 2 0 Median NaN NaN NaN 0 0 Median 6532900 4626400 1906400 6532900 4626400 1906400 0 0 0 11589 1300 11902 41641;41642 62437;62438 62438 2 TAFDEAIAELDTLNEESYK YEILNSPEKACSLAKTAFDEAIAELDTLNE EAIAELDTLNEESYKDSTLIMQLLRDNLTL K T A Y K D 3 0 1 2 0 0 4 0 0 1 2 1 0 1 0 1 2 0 1 0 0 0 19 0 2157.9954 V9HWD6;P31946 V9HWD6 196 214 HEL-S-1;YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 2 8.3311E-35 178.22 3 0.58115 0.73806 13.341 2 Median 0.58115 0.73806 13.341 2 0 Median NaN NaN NaN 0 0 Median 6423800 4641200 1782600 6423800 4641200 1782600 0 0 0 11590 1311 11903 41643;41644;41645 62439;62440;62441;62442 62441 4 TAFDEAIAELDTLSEESYK YEILNSPEKACSLAKTAFDEAIAELDTLSE EAIAELDTLSEESYKDSTLIMQLLRDNLTL K T A Y K D 3 0 0 2 0 0 4 0 0 1 2 1 0 1 0 2 2 0 1 0 0 0 19 0 2130.9845 D0PNI1;P63104;E7EX29;B0AZS6;B7Z2E6;H0YB80;Q2F831 D0PNI1 194 212 YWHAZ 14-3-3 protein zeta/delta yes no 2 1.0288E-31 177.21 4 0.68491 0.86793 20.09 3 Plateau 0.68491 0.86793 20.09 3 0 Plateau NaN NaN NaN 0 0 Median 15557000 9581900 5975100 15557000 9581900 5975100 0 0 0 11591 974 11904 41646;41647;41648;41649 62443;62444;62445;62446;62447;62448;62449;62450 62444 8 TAFGIISTVK STNCRAALLHGETRKTAFGIISTVKKPRPS GETRKTAFGIISTVKKPRPSEGDEDCLPAS K T A V K K 1 0 0 0 0 0 0 1 0 2 0 1 0 1 0 1 2 0 0 1 0 0 10 0 1035.5964 P78346;Q5VU10 P78346 237 246 RPP30 Ribonuclease P protein subunit p30 yes no 2 0.020007 45.368 1 0.6593 0.84472 NaN 1 Median 0.6593 0.84472 NaN 1 0 Median NaN NaN NaN 0 0 Median 4372800 2644600 1728300 4372800 2644600 1728300 0 0 0 11592 1425 11905 41650 62451 62451 1 TAFHPDLCSQLDQLLQQQSGEFSFLK PFEIKEHMVLAPRRRTAFHPDLCSQLDQLL DQLLQQQSGEFSFLKDLKGRQPLRSGPTHV R T A L K D 1 0 0 2 1 5 1 1 1 0 5 1 0 3 1 3 1 0 0 0 0 0 26 0 3036.4651 D6W625;Q13111;K7EPA1 D6W625 485 510 CHAF1A Chromatin assembly factor 1 subunit A yes no 3 0.048127 27.299 1 0.47474 0.58979 NaN 1 Median 0.47474 0.58979 NaN 1 0 Median NaN NaN NaN 0 0 Median 1220500 882650 337880 1220500 882650 337880 0 0 0 11593 997 11906 41651 62452 62452 1 TAFQEALDAAGDK ______________________________ SKTAFQEALDAAGDKLVVVDFSATWCGPCK K T A D K L 4 0 0 2 0 1 1 1 0 0 1 1 0 1 0 0 1 0 0 0 0 0 13 0 1335.6307 H9ZYJ2;P10599 H9ZYJ2 9 21 TXN Thioredoxin yes no 2 0.00076916 112.5 2 2 0.50424 0.72365 6.8446 2 Median NaN NaN NaN 0 0 Median 0.50424 0.72365 6.8446 2 0 Median 16053000 11418000 4634900 2734400 2734400 0 13318000 8683400 4634900 11594 1124 11907 41652;41653;41654;41655 62453;62454;62455;62456;62457;62458 62456 6 TAFYNEDDSEEEQR KGSEPHMRTRNQGRRTAFYNEDDSEEEQRQ RTAFYNEDDSEEEQRQLLFEDTSLTFGTSS R T A Q R Q 1 1 1 2 0 1 4 0 0 0 0 0 0 1 0 1 1 0 1 0 0 0 14 0 1731.686 Q8WWQ0;Q9NWP3 Q8WWQ0 1775 1788 PHIP PH-interacting protein yes no 2 0.0005747 58.172 2 0.6001 0.77191 3.6041 2 Median NaN NaN NaN 0 0 Median 0.6001 0.77191 3.6041 2 0 Median 8007100 5069500 2937600 0 0 0 8007100 5069500 2937600 11595 1668 11908 41656;41657 62459;62460 62460 2 TAGAPTGTVPQQLQVHGVQQSVPVTQER PPEQSPVQANSSSSKTAGAPTGTVPQQLQV QVHGVQQSVPVTQERSVVQATPQAPKPGPV K T A E R S 2 1 0 0 0 6 1 3 1 0 1 0 0 0 3 1 4 0 0 5 0 0 28 0 2912.5104 P22670 P22670 220 247 RFX1 MHC class II regulatory factor RFX1 yes yes 3 0.0072518 34.178 3 2 0.52884 0.71021 12.31 5 Median 0.52884 0.71021 9.3571 3 0 Median 0.49966 0.70978 19.974 2 0 Median 37046000 23879000 13167000 17292000 11223000 6069700 19754000 12657000 7097100 11596 1291 11909 41658;41659;41660;41661;41662 62461;62462;62463;62464;62465;62466;62467 62461 7 TAGLVMTHLILK HLYARLRDPAQQVRKTAGLVMTHLILKDMV VRKTAGLVMTHLILKDMVKVKGQVSEMAVL K T A L K D 1 0 0 0 0 0 0 1 1 1 3 1 1 0 0 0 2 0 0 1 0 0 12 0 1295.7635 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1111 1122 NCAPD2 Condensin complex subunit 1 yes no 3 0.021744 27.664 1 0.82576 1.0477 NaN 1 Median 0.82576 1.0477 NaN 1 0 Median NaN NaN NaN 0 0 Median 6280000 3715200 2564800 6280000 3715200 2564800 0 0 0 11597 757 11910 41663 62468;62469;62470 62470 3 TAGPLESSETEEASQLK QTSACRLQEELEKLRTAGPLESSETEEASQ GPLESSETEEASQLKERLEKEKKLTSDLGR R T A L K E 2 0 0 0 0 1 4 1 0 0 2 1 0 0 1 3 2 0 0 0 0 0 17 0 1775.8425 A0A0A0MRV0;A7BI36;Q9P2E9;F8W7S5;A1A5C4;A0A087WVV2;A1A5C5;B3KSG1;A0A087WU26 A0A0A0MRV0 1334 1350 RRBP1 Ribosome-binding protein 1 yes no 2 0.0049581 45.347 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10577000 0 10577000 1671000 0 1671000 8906500 0 8906500 11598 390 11911 41664;41665;41666 62471;62472;62473 62472 3 TAGTLFGEGFR LKAAEHRQTVLESIRTAGTLFGEGFRAFVT ESIRTAGTLFGEGFRAFVTDWDKVTATVAG R T A F R A 1 1 0 0 0 0 1 3 0 0 1 0 0 2 0 0 2 0 0 0 0 0 11 0 1154.572 Q9NVI7;Q5T9A4;Q96T67;Q9H834 Q9NVI7 276 286 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B no no 2 0.003331 72.928 1 0.46421 0.62151 NaN 1 Median 0.46421 0.62151 NaN 1 0 Median NaN NaN NaN 0 0 Median 5973800 4296600 1677200 5973800 4296600 1677200 0 0 0 11599 1763;1573 11912 41667 62474 62474 1 TAHNSEADLEESFNEHELEPSSPK PSQGIYMVYCRKHKKTAHNSEADLEESFNE EESFNEHELEPSSPKSKKKSRKGRPRKTNF K T A P K S 2 0 2 1 0 0 6 0 2 0 2 1 0 1 2 4 1 0 0 0 0 0 24 0 2696.1838 Q8IWS0 Q8IWS0 134 157 PHF6 PHD finger protein 6 yes yes 3 3.9285E-05 67.979 3 1 0.76846 0.97534 21.814 4 Median 0.7767 0.97773 10.961 3 0 Median 0.49696 0.69797 NaN 1 0 Median 19003000 11883000 7120200 14832000 8946600 5885900 4170400 2936100 1234300 11600 1625 11913 41668;41669;41670;41671 62475;62476;62477;62478;62479;62480 62476 6 TAICNLILGNPPSK KVHILGSFQNIKMARTAICNLILGNPPSKV RTAICNLILGNPPSKVYGNIRAVASRSADR R T A S K V 1 0 2 0 1 0 0 1 0 2 2 1 0 0 2 1 1 0 0 0 0 0 14 0 1496.8021 B2R823;Q9NRX1 B2R823 223 236 PNO1 RNA-binding protein PNO1 yes no 2 1.8315E-09 143.55 4 0.96597 1.2434 20.135 4 Median 0.96597 1.2434 20.135 4 0 Median NaN NaN NaN 0 0 Median 33717000 16187000 17530000 33717000 16187000 17530000 0 0 0 11601 713 11914 41672;41673;41674;41675 62481;62482;62483;62484;62485;62486;62487 62482 7 TAITVEHLAIK STYEQVDLIGKKTQKTAITVEHLAIKCHWT KTQKTAITVEHLAIKCHWTQRAAVIGDVIR K T A I K C 2 0 0 0 0 0 1 0 1 2 1 1 0 0 0 0 2 0 0 1 0 0 11 0 1194.6972 Q9NR30 Q9NR30 407 417 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.00080255 76.465 3 2 0.67166 0.85249 11.995 5 Median 0.68123 0.85467 1.8847 3 0 Median 0.44612 0.70691 9.555 2 0 Median 197570000 127110000 70458000 114670000 70143000 44528000 82899000 56969000 25930000 11602 1756 11915 41676;41677;41678;41679;41680 62488;62489;62490;62491;62492;62493;62494;62495 62492 8 TALALAIAQELGSK AGRAVLLAGPPGTGKTALALAIAQELGSKV KTALALAIAQELGSKVPFCPMVGSEVYSTE K T A S K V 4 0 0 0 0 1 1 1 0 1 3 1 0 0 0 1 1 0 0 0 0 0 14 0 1384.7926 B5BUB1;Q9Y265;E7ETR0;B3KRS7 B5BUB1 77 90 RUVBL1 RuvB-like 1 yes no 2 1.6342E-45 190.66 4 2 0.58121 0.7326 36.317 6 Median 0.55364 0.69119 5.7943 4 0 Median 0.93613 1.4128 10.635 2 0 Median 183740000 110560000 73188000 143360000 89144000 54214000 40386000 21412000 18974000 11603 896 11916 41681;41682;41683;41684;41685;41686 62496;62497;62498;62499;62500;62501;62502;62503;62504 62500 8 TALFEEISR QGAVESIAMKNPKERTALFEEISRSGELAQ KNPKERTALFEEISRSGELAQEYDKRKKEM R T A S R S 1 1 0 0 0 0 2 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 9 0 1064.5502 Q14683;G8JLG1;Q6P2R1;Q6MZR8;A8K7A6;Q68EN4;H0Y7K8;Q5H934 Q14683 152 160 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.026792 51.066 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3766100 3766100 0 3766100 3766100 0 0 0 0 11604 1492 11917 41687 62505 62505 1 TALGDIGNK PTAPAATSKPGLRPRTALGDIGNKVSEQLQ PGLRPRTALGDIGNKVSEQLQAKMPMKKEA R T A N K V 1 0 1 1 0 0 0 2 0 1 1 1 0 0 0 0 1 0 0 0 0 0 9 0 887.47125 P14635;E9PC90;H1UBN2;D6RHI0 P14635 43 51 CCNB1;CCNB1V G2/mitotic-specific cyclin-B1 yes no 2 0.015281 85.161 4 1.0346 1.1411 11.198 4 Linear 1.0346 1.1411 11.198 4 0 Linear NaN NaN NaN 0 0 Median 92553000 46141000 46412000 92553000 46141000 46412000 0 0 0 11605 1268 11918 41688;41689;41690;41691 62506;62507;62508;62509 62507 4 TALHGESNSVLIIGPR GVQVQYKHLSELLKRTALHGESNSVLIIGP ALHGESNSVLIIGPRGSGKTMLINHALKEL R T A P R G 1 1 1 0 0 0 1 2 1 2 2 0 0 0 1 2 1 0 0 1 0 0 16 0 1662.9053 A8K7H4;O43929;B7Z2M4;C9JGH7;C9J2X8;Q53SE3 A8K7H4 54 69 ORC4;ORC4L Origin recognition complex subunit 4 yes no 3 0.0090318 55.415 1 0.30804 0.41054 NaN 1 Median 0.30804 0.41054 NaN 1 0 Median NaN NaN NaN 0 0 Median 3346800 2157200 1189600 3346800 2157200 1189600 0 0 0 + 11606 636 11919 41692 62510 62510 1 TALIHDGLAR GGVMDVNTALQEVLKTALIHDGLARGIREA QEVLKTALIHDGLARGIREAAKALDKRQAH K T A A R G 2 1 0 1 0 0 0 1 1 1 2 0 0 0 0 0 1 0 0 0 0 0 10 0 1065.5931 P25398 P25398 24 33 RPS12 40S ribosomal protein S12 yes yes 2;3 0.0010215 112.71 5 4 0.83837 1.1628 37.116 9 Median 0.79573 1.0842 7.1364 5 0 Median 1.3825 2.1297 4.7631 4 0 Median 747110000 396710000 350390000 636590000 350480000 286110000 110520000 46239000 64283000 11607 1296 11920 41693;41694;41695;41696;41697;41698;41699;41700;41701 62511;62512;62513;62514;62515;62516;62517;62518;62519;62520;62521;62522;62523;62524;62525;62526 62511 16 TALINSTGEEVAMR VWKAQNTWGCGNSLRTALINSTGEEVAMRK RTALINSTGEEVAMRKLVRSVTVVEDDEDE R T A M R K 2 1 1 0 0 0 2 1 0 1 1 0 1 0 0 1 2 0 0 1 0 0 14 0 1490.7399 P02545;Q3BDU5;Q5TCI8;B4DFR3 P02545 528 541 LMNA Prelamin-A/C;Lamin-A/C yes no 2 7.5709E-10 98.898 4 2 1.2638 2.0099 62.476 3 Plateau 0.47586 0.67749 NaN 1 0 Median 1.2724 1.9992 0.75663 2 0 Median 65994000 28428000 37566000 5250900 4387900 863040 60743000 24040000 36703000 11608 1229 11921;11922 41702;41703;41704;41705;41706;41707 62527;62528;62529;62530;62531;62532 62532 472 5 TALINSTGEEVAMRK VWKAQNTWGCGNSLRTALINSTGEEVAMRK TALINSTGEEVAMRKLVRSVTVVEDDEDED R T A R K L 2 1 1 0 0 0 2 1 0 1 1 1 1 0 0 1 2 0 0 1 0 0 15 1 1618.8349 P02545;Q3BDU5;Q5TCI8;B4DFR3 P02545 528 542 LMNA Prelamin-A/C;Lamin-A/C yes no 2;3 0.0049439 45.79 1 2 1.5782 2.4517 64.305 3 Plateau 0.59904 0.7994 NaN 1 0 Median 1.5678 2.433 3.3368 2 0 Median 23294000 9681400 13613000 2159800 1319700 840090 21135000 8361700 12773000 11609 1229 11923;11924 41708;41709;41710 62533;62534;62535 62534 472 3 TALLAVK VRKKIYFKNSENLWKTALLAVKQRNRGPSP KNSENLWKTALLAVKQRNRGPSPEPLKLML K T A V K Q 2 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 7 0 714.46398 B4DZL4;A0A024RCG4;Q92674 B4DZL4 271 277 FSHPRH1;CENPI Centromere protein I yes no 2 0.030959 62.714 1 0.67289 0.84165 NaN 1 Median 0.67289 0.84165 NaN 1 0 Median NaN NaN NaN 0 0 Median 7749400 4441000 3308400 7749400 4441000 3308400 0 0 0 11610 294 11925 41711 62536 62536 1 TALLDISCVK SYLITSVELLESKLKTALLDISCVKHIIYV ESKLKTALLDISCVKHIIYVDNKAINKAEY K T A V K H 1 0 0 1 1 0 0 0 0 1 2 1 0 0 0 1 1 0 0 1 0 0 10 0 1118.6005 B4DH39;Q8TAF6;O60488 B4DH39 153 162 FACL4;ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 2 0.00823 55.549 1 0.52283 0.66562 NaN 1 Median 0.52283 0.66562 NaN 1 0 Median NaN NaN NaN 0 0 Median 5459200 3507200 1952000 5459200 3507200 1952000 0 0 0 11611 806 11926 41712 62537 62537 1 TALLLR NSFMIFCSTCNNTQRTALLLRNLGFTAIPL CSTCNNTQRTALLLRNLGFTAIPLHGQMSQ R T A L R N 1 1 0 0 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 6 0 685.44866 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;Q7Z4B1 Q53GJ1 272 277 hCG_27698;DDX47;E4-DBP;MST162 Probable ATP-dependent RNA helicase DDX47 yes no 2 0.03763 101.72 2 0.84302 1.1317 7.2116 2 Median 0.84302 1.1317 7.2116 2 0 Median NaN NaN NaN 0 0 Median 64660000 37143000 27517000 64660000 37143000 27517000 0 0 0 11612 249 11927 41713;41714 62538;62539 62538 2 TALPAQSAATLPAR ESSPIPSPTSDRKAKTALPAQSAATLPART KTALPAQSAATLPARTQETPSAQMEGFLNR K T A A R T 5 1 0 0 0 1 0 0 0 0 2 0 0 0 2 1 2 0 0 0 0 0 14 0 1366.7569 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;B4DIF8 B2ZZ89 2178 2191 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 3.7178E-14 110.86 1 0.93867 1.2499 NaN 1 Median 0.93867 1.2499 NaN 1 0 Median NaN NaN NaN 0 0 Median 19852000 11001000 8851300 19852000 11001000 8851300 0 0 0 11613 346 11928 41715 62540;62541;62542 62540 3 TALPFNR KDDMSYRRISAVEPKTALPFNRFLPNKSRQ RISAVEPKTALPFNRFLPNKSRQPSYVPAP K T A N R F 1 1 1 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 7 0 817.44464 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424;E9PLU6;E9PRE3;E9PRJ0;E9PK58;E9PJ10 A0A1P7ZIM8 254 260 LMO7 LIM domain only protein 7 yes no 2 0.0070375 121.87 3 0.47424 0.63062 12.001 3 Median 0.47424 0.63062 12.001 3 0 Median NaN NaN NaN 0 0 Median 51659000 35784000 15875000 51659000 35784000 15875000 0 0 0 11614 525 11929 41716;41717;41718 62543;62544;62545;62546;62547 62543 5 TALQEEIK ASNQREEYLLLRLFKTALQEEIKSKVDQIQ LLLRLFKTALQEEIKSKVDQIQEIVTGNPT K T A I K S 1 0 0 0 0 1 2 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 0 930.50221 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;H0YLE8;B4E2M0;F2Z2E2;A2RRC9;Q86VI3 A4QPB0 1028 1035 IQGAP1;hCG_1991735;IQGAP3 Ras GTPase-activating-like protein IQGAP1;Ras GTPase-activating-like protein IQGAP3 yes no 2 0.00021837 135.77 1 0.45821 0.57589 NaN 1 Median 0.45821 0.57589 NaN 1 0 Median NaN NaN NaN 0 0 Median 4408800 3037600 1371200 4408800 3037600 1371200 0 0 0 11615 287 11930 41719 62548 62548 1 TALTYYLDITNPPR ESNKKHPFPCPTSYRTALTYYLDITNPPRT RTALTYYLDITNPPRTNVLYELAQYASEPS R T A P R T 1 1 1 1 0 0 0 0 0 1 2 0 0 0 2 0 3 0 2 0 0 0 14 0 1636.8461 B2R6E5;A8K3B4;Q59ED7;H0Y4R2;P16435;Q63HL4;B4DJI8;B4E305;B4DKM8;E7EMD0;B4DDH3 B2R6E5 372 385 POR;DKFZp686G04235 NADPH--cytochrome P450 reductase yes no 2 0.00012233 93.345 2 0.45764 0.62779 26.154 2 Median 0.45764 0.62779 26.154 2 0 Median NaN NaN NaN 0 0 Median 9967600 6138400 3829200 9967600 6138400 3829200 0 0 0 11616 592 11931 41720;41721 62549;62550;62551 62550 3 TAMEVEAPSKPAR RRKLLQQIRLAQKEKTAMEVEAPSKPARTS EKTAMEVEAPSKPARTSEPQLKRQKKTKAP K T A A R T 3 1 0 0 0 0 2 0 0 0 0 1 1 0 2 1 1 0 0 1 0 0 13 1 1385.6973 A0A0B4J220;L0R588 A0A0B4J220 84 96 C11orf98;C11orf48 yes no 2 0.023821 61.344 1 0.64631 0.99631 NaN 1 Median NaN NaN NaN 0 0 Median 0.64631 0.99631 NaN 1 0 Median 5435300 3262000 2173300 0 0 0 5435300 3262000 2173300 11617 415 11932 41722 62552 62552 132 1 TANSPGSGARPDPVR ______________________________ TANSPGSGARPDPVRSFNRWKKKHSHRQNK K T A V R S 2 2 1 1 0 0 0 2 0 0 0 0 0 0 3 2 1 0 0 1 0 0 15 1 1480.7383 Q13206;Q86VR6;E9PIF2;Q59EC7;B4DKX3 Q13206 4 18 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 3 0.0018909 35.35 1 0.75095 0.98597 NaN 1 Median NaN NaN NaN 0 0 Median 0.75095 0.98597 NaN 1 0 Median 1831800 997740 834060 0 0 0 1831800 997740 834060 11618 1466 11933 41723 62553 62553 1 TAPLLLSYYLIK GTGQLFQAQQDLLHRTAPLLLSYYLIKWGS LHRTAPLLLSYYLIKWGSECLATDVPLDTL R T A I K W 1 0 0 0 0 0 0 0 0 1 4 1 0 0 1 1 1 0 2 0 0 0 12 0 1393.8221 G3V198;Q12769;E9PR16 G3V198 731 742 NUP160 Nuclear pore complex protein Nup160 yes no 2 0.05077 72.096 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1628100 1628100 0 1628100 1628100 0 0 0 0 11619 1077 11934 41724 62554 62554 1 TAQAVFPAIAQEICQEEVSRPAGK LKGFKTIMLNCMSLRTAQAVFPAIAQEICQ AQEICQEEVSRPAGKDMMRKLEKHMTAEKG R T A G K D 5 1 0 0 1 3 3 1 0 2 0 1 0 1 2 1 1 0 0 2 0 0 24 1 2599.3064 B2R935;A0A024R1S2;Q99741 B2R935 238 261 CDC6 Cell division control protein 6 homolog yes no 3 0.017665 18.403 1 0.65336 0.82792 NaN 1 Median 0.65336 0.82792 NaN 1 0 Median NaN NaN NaN 0 0 Median 5157800 3164200 1993600 5157800 3164200 1993600 0 0 0 11620 64 11935 41725 62555 62555 1 TAQCFLR KDGVWNLQNEVTKERTAQCFLRVDDESMQR QNEVTKERTAQCFLRVDDESMQRFHNRVRQ R T A L R V 1 1 0 0 1 1 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 7 0 894.43817 Q6P2Q9 Q6P2Q9 1225 1231 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.02583 62.978 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2869300 2869300 0 2869300 2869300 0 0 0 0 11621 1592 11936 41726 62556 62556 1 TAQEVETYRR KKKNFYQEHPDLARRTAQEVETYRRSKEIT DLARRTAQEVETYRRSKEITVRGHNCPKPV R T A R R S 1 2 0 0 0 1 2 0 0 0 0 0 0 0 0 0 2 0 1 1 0 0 10 1 1251.6208 B4DN41;J3KTA4;B5BUE6;P17844;Q7Z2V5;Q59E92;J3QRQ7;J3QR02;J3KRX8;C1IK54 B4DN41 58 67 DDX5;DKFZp686J01190;DDX5-ETV4 fusion Probable ATP-dependent RNA helicase DDX5 yes no 2;3 0.0078982 59.35 2 0.44407 0.56916 26.885 2 Median 0.44407 0.56916 26.885 2 0 Median NaN NaN NaN 0 0 Median 12397000 8400900 3996500 12397000 8400900 3996500 0 0 0 11622 833 11937 41727;41728 62557;62558 62557 2 TAQNFLSIFLK DQDVVITNSYETAMRTAQNFLSIFLKKCGS TAMRTAQNFLSIFLKKCGSKQGEEDYRPLF R T A L K K 1 0 1 0 0 1 0 0 0 1 2 1 0 2 0 1 1 0 0 0 0 0 11 0 1280.7129 Q6IEH8;Q6KC79 Q6IEH8 1537 1547 NIPBL Nipped-B-like protein yes no 2 7.3252E-06 118.71 3 0.40668 0.53475 47.673 3 Median 0.40668 0.53475 47.673 3 0 Median NaN NaN NaN 0 0 Median 10460000 7337900 3122100 10460000 7337900 3122100 0 0 0 11623 1586 11938 41729;41730;41731 62559;62560;62561;62562;62563 62562 5 TASALFAGFR ______________________________ ASERRTASALFAGFRALGLFSNDIPHVVRF R T A F R A 3 1 0 0 0 0 0 1 0 0 1 0 0 2 0 1 1 0 0 0 0 0 10 0 1039.5451 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 9 18 WDR36 WD repeat-containing protein 36 yes no 2 0.00013289 118.5 6 2 0.75202 1.0299 10.416 4 Median 0.83159 1.1279 5.9802 2 0 Median 0.6757 0.95538 3.7605 2 0 Median 59580000 39345000 20235000 41934000 29224000 12709000 17646000 10121000 7525500 11624 404 11939 41732;41733;41734;41735;41736;41737;41738;41739 62564;62565;62566;62567;62568;62569;62570;62571;62572 62567 9 TASVLSKDDVAPESGDTTVK EKQKERKKKRQQARKTASVLSKDDVAPESG SKDDVAPESGDTTVKKPESKKEQTPEHGKK K T A V K K 2 0 0 3 0 0 1 1 0 0 1 2 0 0 1 3 3 0 0 3 0 0 20 1 2019.0008 O76021;Q32Q62;J3QSV6;A0PJ61 O76021 312 331 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2;3 8.8884E-62 233.4 8 3 0.63186 0.77354 18.485 11 Median 0.64863 0.79975 6.0084 8 0 Median 0.34789 0.56287 3.2964 3 0 Plateau 829080000 532460000 296620000 631810000 387540000 244270000 197280000 144920000 52355000 11625 1210 11940 41740;41741;41742;41743;41744;41745;41746;41747;41748;41749;41750 62573;62574;62575;62576;62577;62578;62579;62580;62581;62582;62583;62584;62585;62586;62587;62588;62589;62590;62591;62592;62593 62578 21 TATDEAYKDPSNLQGK RDSDELKSWVNEKMKTATDEAYKDPSNLQG ATDEAYKDPSNLQGKVQKHQAFEAELSANQ K T A G K V 2 0 1 2 0 1 1 1 0 0 1 2 0 0 1 1 2 0 1 0 0 0 16 1 1736.8217 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 595 610 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2;3 7.8868E-54 211.22 7 0.7821 0.96877 17.587 4 Median 0.7821 0.96877 17.587 4 0 Median NaN NaN NaN 0 0 Median 43012000 23908000 19104000 43012000 23908000 19104000 0 0 0 11626 1476 11941 41751;41752;41753;41754;41755;41756;41757 62594;62595;62596;62597;62598;62599;62600;62601;62602;62603;62604;62605 62596 12 TATESFASDPILYRPVAVALDTK HGTHEYHAETIKNVRTATESFASDPILYRP DPILYRPVAVALDTKGPEIRTGLIKGSGTA R T A T K G 4 1 0 2 0 0 1 0 0 1 2 1 0 1 2 2 3 0 1 2 0 0 23 1 2464.285 V9HWB8;P14618;H3BTN5;A0A024R5Z9;A0A024R609;H3BQ34;H3BT25;H3BUW1;H3BTJ2 V9HWB8 93 115 HEL-S-30;PKM;PKM2 Pyruvate kinase;Pyruvate kinase PKM yes no 3 1.3536E-13 115.76 4 2 0.94791 1.2597 122.01 5 Median 0.90298 1.195 8.0909 3 0 Median 6.3621 10.841 10.569 2 0 Median 261190000 81848000 179340000 171100000 69319000 101780000 90085000 12529000 77556000 11627 1267 11942 41758;41759;41760;41761;41762;41763 62606;62607;62608;62609;62610;62611;62612;62613;62614;62615 62608 10 TATFAISILQQIELDLK KGYDVIAQAQSGTGKTATFAISILQQIELD TFAISILQQIELDLKATQALVLAPTRELAQ K T A L K A 2 0 0 1 0 2 1 0 0 3 3 1 0 1 0 1 2 0 0 0 0 0 17 0 1903.0666 A8K7F6;P60842;A8K088;J3KT12;J3KTB5;Q59F68;J3QS69;J3QR64;J3QL43;J3QLN6;J3QKZ9;B4E047;J3KS25;B4E102;J3KS93 A8K7F6 83 99 EIF4A1 Eukaryotic initiation factor 4A-I yes no 2 0.00015943 120.84 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7099500 7099500 0 7099500 7099500 0 0 0 0 11628 634 11943 41764;41765 62616;62617 62616 2 TATGPSTGGGTVISR QKVNGASVVMVQPSKTATGPSTGGGTVISR TATGPSTGGGTVISRTQSSLVEAFNKILNS K T A S R T 1 1 0 0 0 0 0 4 0 1 0 0 0 0 1 2 4 0 0 1 0 0 15 0 1360.6947 Q8N1G0;H0Y5I5;F8WCX2 Q8N1G0 478 492 ZNF687 Zinc finger protein 687 yes no 2 0.0025789 83.617 2 2 0.38096 0.53159 64.152 3 Median 0.35927 0.49221 10.886 2 0 Median 1.0544 1.4833 NaN 1 0 Median 19644000 12229000 7414500 8692200 6414900 2277200 10952000 5814300 5137200 11629 1634 11944 41766;41767;41768;41769 62618;62619;62620;62621;62622;62623 62618 6 TATLRPYLSAVR ______________________________ ______________________________ M T A V R A 2 2 0 0 0 0 0 0 0 0 2 0 0 0 1 1 2 0 1 1 0 0 12 1 1346.767 F8WDD7;F8WCF6;A0A0A6YYG9;P59998;Q9H7Z5;F8WE39;F8WDW3 F8WDD7 2 13 ARPC4;ARPC4-TTLL3 Actin-related protein 2/3 complex subunit 4 yes no 2 0.048597 67.207 1 1.2328 1.7035 NaN 1 Median 1.2328 1.7035 NaN 1 0 Median NaN NaN NaN 0 0 Median 6346900 2392600 3954300 6346900 2392600 3954300 0 0 0 11630 407 11945 41770 62624 62624 1 TATSLAEGLSLVVSPDSIHSVAPENEGR LSFYLIFTNEGRALKTATSLAEGLSLVVSP SPDSIHSVAPENEGRLVHIIGALRTSKLLS K T A G R L 3 1 1 1 0 0 3 2 1 1 3 0 0 0 2 5 2 0 0 3 0 0 28 0 2835.425 A0A024R2F9;Q9BTV4;A0A0S2Z5N2 A0A024R2F9 60 87 TMEM43 Transmembrane protein 43 yes no 3 1.2909E-07 49.793 1 0.64731 0.87868 NaN 1 Median 0.64731 0.87868 NaN 1 0 Median NaN NaN NaN 0 0 Median 9107900 5688400 3419400 9107900 5688400 3419400 0 0 0 11631 83 11946 41771 62625 62625 1 TATTQETDGFQVK KDLYGPDNHLVEWHRTATTQETDGFQVKRP HRTATTQETDGFQVKRPGDVNVRCTVLLML R T A V K R 1 0 0 1 0 2 1 1 0 0 0 1 0 1 0 0 4 0 0 1 0 0 13 0 1424.6783 A0A024R137;A0A024R102;Q96GM5;F8VUB0;A8K9I5;F8VRQ4;F8VZ70 A0A024R137 385 397 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 2 0.0016834 72.434 2 2 0.87169 1.1973 15.147 3 Median 0.74761 0.94894 NaN 1 0 Median 0.88529 1.2288 3.6731 2 0 Median 17899000 8300200 9599200 9963100 4118300 5844900 7936300 4182000 3754300 11632 47 11947 41772;41773;41774;41775 62626;62627;62628;62629;62630 62626 4 TATVHEVIR TGGCMYISGVPGTGKTATVHEVIRCLQQAA VPGTGKTATVHEVIRCLQQAAQANDVPPFQ K T A I R C 1 1 0 0 0 0 1 0 1 1 0 0 0 0 0 0 2 0 0 2 0 0 9 0 1024.5665 B7Z8H0;Q96F82;A8K794;Q13415 B7Z8H0 536 544 ORC1L;ORC1 Origin recognition complex subunit 1 yes no 2 0.027375 47.198 1 0.35052 0.46399 NaN 1 Median NaN NaN NaN 0 0 Median 0.35052 0.46399 NaN 1 0 Median 2767800 1999200 768600 0 0 0 2767800 1999200 768600 11633 630 11948 41776 62631 62631 1 TAVAPIER AKDFLAGGVAAAISKTAVAPIERVKLLLQV VAAAISKTAVAPIERVKLLLQVQHASKQIT K T A E R V 2 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 8 0 855.48142 Q6NVC0;P05141;A0A0S2Z359;V9GYG0;A8K787;A0A0S2Z3H3;P12235;Q9H0C2;Q6I9V5;Q59EI9;P12236 Q6NVC0 49 56 SLC25A5;SLC25A4;SLC25A31;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 2 0.019654 87.181 2 2 6.6712 9.6338 NaN 1 Median NaN NaN NaN 0 0 Median 6.6712 9.6338 NaN 1 0 Median 20145000 1742700 18402000 4515300 0 4515300 15629000 1742700 13887000 11634 1234;1260 11949 41777;41778;41779;41780 62632;62633;62634;62635 62635 4 TAVCDIPPR KNSSYFVEWIPNNVKTAVCDIPPRGLKMAV IPNNVKTAVCDIPPRGLKMAVTFIGNSTAI K T A P R G 1 1 0 1 1 0 0 0 0 1 0 0 0 0 2 0 1 0 0 1 0 0 9 0 1027.5121 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DQN9;B4DMU8;Q96B85;B4DXZ5;B4DMJ5;Q6P602;A4UCT2;Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;Q96HX0;B4DFH6;Q9BVA1;Q13885;A0A024QZU2;B2R6L0;O43209;B7Z4N1;Q9UGA2;A6NNZ2;Q3ZCM7;A0A075B736;Q5SQY0;P04350;B4DJ43;B4DE77 Q5JP53 333 341 TUBB;TUBB2C;TUBB4B;TUBB2B;TUBB2A;DKFZp566F223;TUBB8;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-8 chain;Tubulin beta-4A chain no no 2 0.001518 98.033 5 2 0.40754 0.55098 5.3202 2 Median 0.40754 0.55098 5.3202 2 0 Median NaN NaN NaN 0 0 Median 93310000 62099000 31211000 81359000 62099000 19260000 11951000 0 11951000 11635 1241;1423;1230;1479;1532 11950 41781;41782;41783;41784;41785;41786;41787 62636;62637;62638;62639;62640;62641;62642;62643;62644;62645;62646;62647;62648;62649 62642 14 TAVDGPDLEMLTGQER YIPPHAALCLEVTLKTAVDGPDLEMLTGQE AVDGPDLEMLTGQERVALANRKRECGNAHY K T A E R V 1 1 0 2 0 1 2 2 0 0 2 0 1 0 1 0 2 0 0 1 0 0 16 0 1730.8145 B2R8G6;A0A024R7P2;B7Z6M0;Q14318;M0R2K9 B2R8G6 146 161 FKBP8 Peptidyl-prolyl cis-trans isomerase FKBP8;Peptidyl-prolyl cis-trans isomerase yes no 2 0.00438 47.915 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3506800 0 3506800 0 0 0 3506800 0 3506800 11636 182 11951 41788 62650 62650 81 1 TAVDSGIPLLTNFQVTK NNNTKFVHDNYVIRRTAVDSGIPLLTNFQV VDSGIPLLTNFQVTKLFAEAVQKSRKVDSK R T A T K L 1 0 1 1 0 1 0 1 0 1 2 1 0 1 1 1 3 0 0 2 0 0 17 0 1802.9778 Q5R210;Q5R208;Q5R206;A8K134;A0A024R454;P31327 Q5R210 1455 1471 CPS1 Carbamoyl-phosphate synthase [ammonia], mitochondrial yes no 2 0.014629 77.192 1 0.57344 0.72714 NaN 1 Median 0.57344 0.72714 NaN 1 0 Median NaN NaN NaN 0 0 Median 1631600 1064400 567160 1631600 1064400 567160 0 0 0 11637 116 11952 41789 62651 62651 1 TAVEMLQNQLK EEKEQAEIQIKEESKTAVEMLQNQLKELNE EESKTAVEMLQNQLKELNEAVAALCGDQEI K T A L K E 1 0 1 0 0 2 1 0 0 0 2 1 1 0 0 0 1 0 0 1 0 0 11 0 1273.67 P49454 P49454 2352 2362 CENPF Centromere protein F yes yes 2 0.0021019 57.859 2 1.0776 1.4714 11.327 2 Median NaN NaN NaN 0 0 Median 1.0776 1.4714 11.327 2 0 Median 7082900 3177000 3905900 0 0 0 7082900 3177000 3905900 11638 1351 11953 41790;41791 62652;62653 62652 590 1 TAVETAVLLLR LGIWEPLAVKLQTYKTAVETAVLLLRIDDI QTYKTAVETAVLLLRIDDIVSGHKKKGDDQ K T A L R I 2 1 0 0 0 0 1 0 0 0 3 0 0 0 0 0 2 0 0 2 0 0 11 0 1184.7129 B4DUR8;B3KX11;Q2TU64;Q59H77;P49368 B4DUR8 463 473 CCT3 T-complex protein 1 subunit gamma yes no 2 0.0030848 74.173 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2959800 2959800 0 2959800 2959800 0 0 0 0 11639 787 11954 41792 62654;62655 62655 2 TAVLTAFANGR LMFEHYNIPAFFLCKTAVLTAFANGRSTGL FLCKTAVLTAFANGRSTGLILDSGATHTTA K T A G R S 3 1 1 0 0 0 0 1 0 0 1 0 0 1 0 0 2 0 0 1 0 0 11 0 1119.6037 Q6FI97;Q53FS0;O96019;O94805 Q6FI97 154 164 BAF53A;ACTL6A;ACTL6B Actin-like protein 6A;Actin-like protein 6B yes no 2 0.0028408 75.378 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3359700 3359700 0 3359700 3359700 0 0 0 0 11640 1227 11955 41793 62656 62656 1 TAVTGSLSENDPLR PLDQKLKYQIDKLIKTAVTGSLSENDPLRF KTAVTGSLSENDPLRFKPHPSNMMSKLSSE K T A L R F 1 1 1 1 0 0 1 1 0 0 2 0 0 0 1 2 2 0 0 1 0 0 14 0 1458.7314 Q8NEJ9;G3V4G1 Q8NEJ9 116 129 NGDN Neuroguidin yes no 2 4.5887E-14 156.01 4 2 0.75295 1.0211 16.018 5 Median 0.78334 1.0561 11.796 4 0 Median 0.50194 0.81972 NaN 1 0 Median 173690000 93285000 80402000 105670000 57283000 48386000 68018000 36002000 32015000 11641 1654 11956 41794;41795;41796;41797;41798;41799 62657;62658;62659;62660;62661;62662;62663;62664;62665 62659 9 TAVVVGTITDDVR SRMIRKMKLPGRENKTAVVVGTITDDVRVQ NKTAVVVGTITDDVRVQEVPKLKVCALRVT K T A V R V 1 1 0 2 0 0 0 1 0 1 0 0 0 0 0 0 3 0 0 4 0 0 13 0 1344.7249 Q0QEW2;G3V203;H0YHA7;A0A024QZD1;J3QQ67;Q07020;F8VUA6;F8VYV2;B4DDY5;A0A075B7A0 Q0QEW2 56 68 RPL18 60S ribosomal protein L18 yes no 2 1.0326E-55 217.02 5 2 0.74706 1.0314 19.451 7 Median 0.68746 0.94899 21.61 5 0 Median 0.75158 1.2432 0.67487 2 0 Median 2992500000 1696300000 1296100000 2503100000 1415200000 1087900000 489340000 281130000 208210000 11642 9 11957 41800;41801;41802;41803;41804;41805;41806 62666;62667;62668;62669;62670;62671;62672;62673;62674;62675;62676;62677;62678;62679;62680;62681;62682;62683;62684;62685;62686;62687;62688;62689;62690 62675 24 TAVVVGTITDDVRVQEVPK SRMIRKMKLPGRENKTAVVVGTITDDVRVQ VGTITDDVRVQEVPKLKVCALRVTSRARSR K T A P K L 1 1 0 2 0 1 1 1 0 1 0 1 0 0 1 0 3 0 0 6 0 0 19 1 2025.1106 Q0QEW2;G3V203;H0YHA7;A0A024QZD1;J3QQ67;Q07020;F8VUA6;F8VYV2;B4DDY5;A0A075B7A0 Q0QEW2 56 74 RPL18 60S ribosomal protein L18 yes no 2;3 3.4456E-19 144.15 6 0.77408 1.0064 20.287 5 Median 0.77408 1.0064 20.287 5 0 Median NaN NaN NaN 0 0 Median 92610000 49661000 42949000 92610000 49661000 42949000 0 0 0 11643 9 11958 41807;41808;41809;41810;41811;41812 62691;62692;62693;62694;62695;62696;62697;62698;62699;62700 62692 10 TAYSGGAEDLER QKSEPREGQKLPKSRTAYSGGAEDLERELK KSRTAYSGGAEDLERELKKEKPKHEHKSSS R T A E R E 2 1 0 1 0 0 2 2 0 0 1 0 0 0 0 1 1 0 1 0 0 0 12 0 1267.5681 Q9Y6G0;Q9Y388 Q9Y6G0 229 240 RBMX2 RNA-binding motif protein, X-linked 2 yes no 2 0.011027 76.927 1 1.138 1.614 NaN 1 Median 1.138 1.614 NaN 1 0 Median NaN NaN NaN 0 0 Median 2373500 1264200 1109300 2373500 1264200 1109300 0 0 0 11644 1813 11959 41813 62701 62701 1 TCAPLAVLQGHSASITSLQFSPLCSGSK AAGSCDKMIRVWCLRTCAPLAVLQGHSASI SITSLQFSPLCSGSKRYLSSTGADGTICFW R T C S K R 3 0 0 0 2 2 0 2 1 1 4 1 0 1 2 6 2 0 0 1 0 0 28 0 2916.4474 Q8WWQ0 Q8WWQ0 256 283 PHIP PH-interacting protein yes yes 3 7.3008E-24 108.69 4 2 0.8571 1.1178 37.171 6 Median 0.8756 1.1395 3.7566 4 0 Median 0.36812 0.56231 8.7374 2 0 Median 405260000 216990000 188270000 357930000 181840000 176090000 47328000 35152000 12176000 11645 1668 11960 41814;41815;41816;41817;41818;41819 62702;62703;62704;62705;62706;62707;62708 62705 7 TCATVTIGGINIAEALVSK PASPATETVPAFSERTCATVTIGGINIAEA VTIGGINIAEALVSKGLATVIRYRQDDDQR R T C S K G 3 0 1 0 1 0 1 2 0 3 1 1 0 0 0 1 3 0 0 2 0 0 19 0 1917.0241 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B4E299;B3KU67;I6TRR8 A0A140VK49 439 457 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 1.3373E-18 141.55 4 0.47316 0.5896 7.4228 4 Median 0.47316 0.5896 7.4228 4 0 Median NaN NaN NaN 0 0 Median 51061000 33757000 17304000 51061000 33757000 17304000 0 0 0 11646 508 11961 41820;41821;41822;41823 62709;62710;62711;62712;62713;62714;62715 62709 7 TCCLLAILLK PGNKVADKGGSIFTKTCCLLAILLKTTNRA SIFTKTCCLLAILLKTTNRASDVRSRSKVV K T C L K T 1 0 0 0 2 0 0 0 0 1 4 1 0 0 0 0 1 0 0 0 0 0 10 0 1203.6719 Q8IZT6;Q4G1H2;Q4G1H0;A0A087WV76;Q5VYL4 Q8IZT6 3372 3381 ASPM Abnormal spindle-like microcephaly-associated protein yes no 2 1.1871E-05 82.452 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11647 1631 11962 41824 62716 62716 1 TCCYQALLVDEER ELQAWHGLQTFSLERTCCYQALLVDEERGR ERTCCYQALLVDEERGRLFVGAENHVASLN R T C E R G 1 1 0 1 2 1 2 0 0 0 2 0 0 0 0 0 1 0 1 1 0 0 13 0 1655.7283 A0A0C4DGV8;A0A1S5UZH6;Q13214;A0A087WZE0;Q9HBR1 A0A0C4DGV8 52 64 SEMA3B Semaphorin-3B yes no 2 0.035798 39.917 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1117400 1117400 0 1117400 1117400 0 0 0 0 11648 430 11963 41825 62717;62718 62717 2 TCFVDCLIEQTHPEIR LIRNVTLCGHLHHGKTCFVDCLIEQTHPEI CFVDCLIEQTHPEIRKRYDQDLCYTDILFT K T C I R K 0 1 0 1 2 1 2 0 1 2 1 0 0 1 1 0 2 0 0 1 0 0 16 0 2016.9397 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3 B4DZB1 94 109 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 3 2.9752E-07 85.469 4 0.55841 0.75993 2.8261 4 Median 0.55841 0.75993 2.8261 4 0 Median NaN NaN NaN 0 0 Median 41617000 27354000 14264000 41617000 27354000 14264000 0 0 0 11649 654 11964 41826;41827;41828;41829 62719;62720;62721;62722;62723;62724;62725;62726 62722 8 TCFYAEQGGQIYDEGYLVK EEVSTGQECGVVLDKTCFYAEQGGQIYDEG AEQGGQIYDEGYLVKVDDSSEDKTEFTVKN K T C V K V 1 0 0 1 1 2 2 3 0 1 1 1 0 1 0 0 1 0 3 1 0 0 19 0 2240.0096 P49588 P49588 532 550 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 1.7066E-17 151.54 5 0.73666 0.95118 3.704 2 Median 0.73666 0.95118 3.704 2 0 Median NaN NaN NaN 0 0 Median 7399600 3589600 3810000 7399600 3589600 3810000 0 0 0 11650 1352 11965 41830;41831;41832;41833;41834 62727;62728;62729;62730;62731;62732 62729 6 TCLLIVFSK IRKKLVIVGDGACGKTCLLIVFSKDQFPEV DGACGKTCLLIVFSKDQFPEVYVPTVFENY K T C S K D 0 0 0 0 1 0 0 0 0 1 2 1 0 1 0 1 1 0 0 1 0 0 9 0 1079.6049 B4DKN9;Q5JR08;A0A024R324;A0A024R0I3;P61586;P08134;Q5JR07;C9JNR4;E9PQH6;C9JX21;Q5JR05;E9PLA2;C9JRM1;Q5JR06;A0A0B6XK12;E9PN11;U3KQA9;U3KQV3;P62745 B4DKN9 19 27 RHOC;RHOA;hCG_2043376;RHOB Transforming protein RhoA;Rho-related GTP-binding protein RhoC;Rho-related GTP-binding protein RhoB yes no 2 0.014406 72.928 3 0.76381 0.98185 6.7243 2 Median 0.76381 0.98185 6.7243 2 0 Median NaN NaN NaN 0 0 Median 15737000 9479500 6257000 15737000 9479500 6257000 0 0 0 11651 38 11966 41835;41836;41837 62733;62734;62735;62736 62734 4 TCSPASLSQASADLEATLR EHSECICHICLVEHKTCSPASLSQASADLE ASLSQASADLEATLRHKLTVMYSQINGASR K T C L R H 4 1 0 1 1 1 1 0 0 0 3 0 0 0 1 4 2 0 0 0 0 0 19 0 1976.9473 Q14258 Q14258 185 203 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 2 0.011494 55.815 2 1.0371 1.4249 76.389 2 Median 1.0371 1.4249 76.389 2 0 Median NaN NaN NaN 0 0 Median 18266000 9298800 8967500 18266000 9298800 8967500 0 0 0 11652 1485 11967 41838;41839 62737;62738 62737 2 TCSQVSSYSLEQESNGEIEHVTK LGVLPFTLNSGSPEKTCSQVSSYSLEQESN SLEQESNGEIEHVTKRAISTPEKSISDVTF K T C T K R 0 0 1 0 1 2 4 1 1 1 1 1 0 0 0 5 2 0 1 2 0 0 23 0 2611.1708 P42695;Q96FA6 P42695 1388 1410 NCAPD3 Condensin-2 complex subunit D3 yes no 3 9.8729E-14 116.48 2 0.72541 0.92077 14.692 2 Median 0.72541 0.92077 14.692 2 0 Median NaN NaN NaN 0 0 Median 18301000 9547200 8753800 18301000 9547200 8753800 0 0 0 11653 1338 11968 41840;41841 62739;62740;62741;62742;62743 62739 5 TCTTVAFTQVNSEDK IIKGKARLGRLVHRKTCTTVAFTQVNSEDK TCTTVAFTQVNSEDKGALAKLVEAIRTNYN K T C D K G 1 0 1 1 1 1 1 0 0 0 0 1 0 1 0 1 4 0 0 2 0 0 15 0 1699.7723 P62424;Q9BY74;Q5T8U2 P62424 198 212 RPL7A;RP-L7a 60S ribosomal protein L7a yes no 2 2.6769E-61 235.49 4 2 0.73219 0.9749 38.442 6 Median 0.74916 0.98205 2.5765 4 0 Median 0.29728 0.47189 4.4448 2 0 Median 2208300000 1286100000 922140000 2041100000 1156300000 884880000 167140000 129880000 37263000 11654 1411 11969 41842;41843;41844;41845;41846;41847 62744;62745;62746;62747;62748;62749;62750;62751;62752;62753;62754;62755;62756;62757;62758;62759;62760;62761;62762;62763;62764;62765 62745 22 TCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVR GADDRLVKIWDYQNKTCVQTLEGHAQNVSC ELPIIITGSEDGTVRIWHSSTYRLESTLNY K T C V R I 2 1 1 1 2 2 3 3 2 3 2 0 0 1 2 3 4 0 0 3 0 0 35 0 3822.8305 P35606 P35606 220 254 COPB2 Coatomer subunit beta yes yes 4 4.8067E-09 55.314 3 0.55207 0.75186 3.6178 3 Median 0.55207 0.75186 3.6178 3 0 Median NaN NaN NaN 0 0 Median 25153000 16056000 9096900 25153000 16056000 9096900 0 0 0 11655 1321 11970 41848;41849;41850 62766;62767;62768;62769;62770 62769 5 TDASSASSFLDSDELER ELAGRPMKVGHVTERTDASSASSFLDSDEL ASSASSFLDSDELERTGIDLGTTGRLQLMA R T D E R T 2 1 0 3 0 0 2 0 0 0 2 0 0 1 0 5 1 0 0 0 0 0 17 0 1828.7963 B4DRA0;B4DLM0;B3KWX7;Q68DD9;B4E1M7;Q14498;H0Y4X3;B7Z4L7;Q6N037;E1P5S2;Q6MZY7;G3XAC6;A0A0U1RQH7;A0A0U1RQW2 B4DRA0 308 324 DKFZp781C0423;RBM39;DKFZp686A11192;RNPC2;DKFZp686C17209 RNA-binding protein 39 yes no 2 1.3804E-13 143.94 4 2 0.70244 0.9236 45.516 5 Median 0.53911 0.71515 31.138 3 0 Median 0.99241 1.4252 5.4397 2 0 Median 59024000 31664000 27360000 33485000 20055000 13430000 25539000 11609000 13930000 11656 786 11971 41851;41852;41853;41854;41855;41856 62771;62772;62773;62774;62775;62776;62777;62778;62779 62772 9 TDDEDFVPSDASPPK MDLDSDEDFSDFDEKTDDEDFVPSDASPPK TDDEDFVPSDASPPKTKTSPKLSNKELKPQ K T D P K T 1 0 0 4 0 0 1 0 0 0 0 1 0 1 3 2 1 0 0 1 0 0 15 0 1618.6999 P11388 P11388 1343 1357 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.011659 33.158 1 0.54548 0.73306 NaN 1 Median NaN NaN NaN 0 0 Median 0.54548 0.73306 NaN 1 0 Median 3176800 2159300 1017400 0 0 0 3176800 2159300 1017400 11657 1256 11972 41857 62780;62781;62782 62782 3 TDDYGRDLSSVQTLLTK DVVESWIGEKENSLKTDDYGRDLSSVQTLL DYGRDLSSVQTLLTKQETFDAGLQAFQQEG K T D T K Q 0 1 0 3 0 1 0 1 0 0 3 1 0 0 0 2 3 0 1 1 0 0 17 1 1910.9585 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16;Q14917 Q13813 2001 2017 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 3 0.01816 47 1 0.75927 1.0182 NaN 1 Median 0.75927 1.0182 NaN 1 0 Median NaN NaN NaN 0 0 Median 7370100 3803900 3566200 7370100 3803900 3566200 0 0 0 11658 1476 11973 41858 62783 62783 1 TDEAFFDSENDPEK VKPFADTLDQVNISKTDEAFFDSENDPEKC KTDEAFFDSENDPEKCCLLLQFILNCLYKI K T D E K C 1 0 1 3 0 0 3 0 0 0 0 1 0 2 1 1 1 0 0 0 0 0 14 0 1642.6635 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8;Q8N7L7;Q96ES5 B2RWN5 1974 1987 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 6.011E-27 181.68 4 2 0.85213 1.0783 17.37 6 Median 0.87171 1.1128 3.1897 4 0 Median 0.5301 0.7932 3.143 2 0 Median 58688000 32278000 26410000 39626000 19904000 19722000 19062000 12374000 6688000 11659 748 11974 41859;41860;41861;41862;41863;41864 62784;62785;62786;62787;62788;62789;62790;62791;62792;62793;62794;62795;62796;62797 62788 14 TDEFQLHTNVNDGTEFGGSIYQK AKSRVTQSNFAVGYKTDEFQLHTNVNDGTE NVNDGTEFGGSIYQKVNKKLETAVNLAWTA K T D Q K V 0 0 2 2 0 2 2 3 1 1 1 1 0 2 0 1 3 0 1 1 0 0 23 0 2599.1827 A0A1L1UHR1;P21796;B3KTS5;B4DEI3 A0A1L1UHR1 175 197 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 3 5.125E-50 191.73 4 2 0.69354 0.91767 76.76 6 Median 0.6799 0.93977 2.7202 4 0 Linear 2.495 3.9856 0.84896 2 0 Median 1086200000 642880000 443280000 998840000 618960000 379880000 87311000 23919000 63392000 11660 524 11975 41865;41866;41867;41868;41869;41870 62798;62799;62800;62801;62802;62803;62804;62805;62806;62807;62808;62809;62810;62811;62812;62813;62814 62802 17 TDFSLSISNSSDVSAK KKSPKVSSKDTREIKTDFSLSISNSSDVSA DFSLSISNSSDVSAKDKHAEDNEKRLAALE K T D A K D 1 0 1 2 0 0 0 0 0 1 1 1 0 1 0 6 1 0 0 1 0 0 16 0 1656.7843 F5H101;A0A024R250;Q76FK4;F8WE42;B4DM91;Q6AI50;A6H8Z4 F5H101 736 751 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 2 1.7698E-05 105.65 4 0.92108 1.174 11.786 3 Plateau 0.92108 1.174 11.786 3 0 Plateau NaN NaN NaN 0 0 Median 12648000 5872700 6775700 12648000 5872700 6775700 0 0 0 11661 80 11976 41871;41872;41873;41874 62815;62816;62817;62818 62815 4 TDGENVFTGQSK ______________________________ KPRTDGENVFTGQSKIYSYMSPNKCSGMRF R T D S K I 0 0 1 1 0 1 1 2 0 0 0 1 0 1 0 1 2 0 0 1 0 0 12 0 1281.5837 E3VVS3;A0A0C4DFR3;Q9NQR1 E3VVS3 12 23 SETD8 N-lysine methyltransferase SETD8 yes no 2 2.2815E-05 91.095 2 2 1.2805 1.6595 11.261 3 Plateau 1.1966 1.5412 10.459 2 0 Median 1.2133 1.7854 NaN 1 0 Median 26966000 9734900 17231000 13993000 5815800 8177400 12973000 3919100 9054000 11662 419 11977 41875;41876;41877;41878 62819;62820;62821;62822;62823 62820 5 TDGSFVVHDIPSGSYVVEVVSPAYR ARVLVDGEEHVGFLKTDGSFVVHDIPSGSY PSGSYVVEVVSPAYRFDPVRVDITSKGKMR K T D Y R F 1 1 0 2 0 0 1 2 1 1 0 0 0 1 2 4 1 0 2 6 0 0 25 0 2679.318 A0A024R9K7;Q9NPA0;H0YDX2 A0A024R9K7 158 182 C15orf24;EMC7 ER membrane protein complex subunit 7 yes no 3 1.3897E-06 64.488 4 0.50148 0.68385 9.058 4 Median 0.50148 0.68385 9.058 4 0 Median NaN NaN NaN 0 0 Median 25453000 17124000 8328800 25453000 17124000 8328800 0 0 0 11663 225 11978 41879;41880;41881;41882 62824;62825;62826;62827;62828;62829;62830 62827 7 TDGSISGDRQPVTVADYISR QRRNRSRRRRNRGNRTDGSISGDRQPVTVA SGDRQPVTVADYISRAESQSRQRPPLERTK R T D S R A 1 2 0 3 0 1 0 2 0 2 0 0 0 0 1 3 2 0 1 2 0 0 20 1 2136.0447 P51116 P51116 598 617 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 3 7.6792E-05 85.496 3 0.51025 0.7051 NaN 1 Median 0.51025 0.7051 NaN 1 0 Median NaN NaN NaN 0 0 Median 11667000 3497900 8169100 11667000 3497900 8169100 0 0 0 11664 1360 11979 41883;41884;41885 62831;62832;62833 62833 3 TDGTVEIYNLSANYFQEK CVAYNNQSNRLAVSRTDGTVEIYNLSANYF TVEIYNLSANYFQEKFFPGHESRATEALCW R T D E K F 1 0 2 1 0 1 2 1 0 1 1 1 0 1 0 1 2 0 2 1 0 0 18 0 2090.9797 Q969X6;H3BSH7;H3BPD7;I3L4T9 Q969X6 36 53 CIRH1A Cirhin yes no 2 1.2125E-83 239.61 5 1 0.86792 1.1062 9.0185 5 Median 0.8919 1.1253 9.5597 4 0 Median 0.69135 1.0558 NaN 1 0 Median 142730000 77072000 65662000 117070000 62031000 55037000 25666000 15041000 10625000 11665 1680 11980 41886;41887;41888;41889;41890;41891 62834;62835;62836;62837;62838;62839;62840;62841;62842;62843 62834 10 TDHPEIGEGKPTPALSEEASSSSIR LSVPAPAVQPEESLKTDHPEIGEGKPTPAL PTPALSEEASSSSIRERPPEEVAARLAQQE K T D I R E 2 1 0 1 0 0 4 2 1 2 1 1 0 0 3 5 2 0 0 0 0 0 25 1 2594.246 B4DS66;Q16891;B4DKR1;Q05DN3 Q16891 171 195 IMMT MICOS complex subunit MIC60 no no 3;4 5.9326E-07 57.238 3 4 1.3849 2.0412 66.384 7 Median 0.50872 0.6907 6.2527 3 0 Median 1.5011 2.3392 17.828 4 0 Median 80100000 36467000 43633000 31901000 18537000 13364000 48199000 17930000 30269000 11666 1524;854 11981 41892;41893;41894;41895;41896;41897;41898 62844;62845;62846;62847;62848;62849;62850;62851;62852;62853;62854;62855 62849 12 TDITYPAGFMDVISIDK KICMQRFIKIDGKVRTDITYPAGFMDVISI ITYPAGFMDVISIDKTGENFRLIYDTKGRF R T D D K T 1 0 0 3 0 0 0 1 0 3 0 1 1 1 1 1 2 0 1 1 0 0 17 0 1884.9179 B2R491;P62701;Q96IR1;Q53HV1 B2R491 78 94 RPS4X 40S ribosomal protein S4;40S ribosomal protein S4, X isoform yes no 2 5.62E-06 107.99 5 0.76352 0.95415 23.387 5 Median 0.76352 0.95415 23.387 5 0 Median NaN NaN NaN 0 0 Median 34465000 16136000 18329000 34465000 16136000 18329000 0 0 0 11667 681 11982;11983 41899;41900;41901;41902;41903 62856;62857;62858;62859;62860;62861;62862 62862 235 7 TDLDDDITALK AIKAKIMAKKRSTIKTDLDDDITALKQRSF STIKTDLDDDITALKQRSFVDAEVDVTRDI K T D L K Q 1 0 0 4 0 0 0 0 0 1 2 1 0 0 0 0 2 0 0 0 0 0 11 0 1218.598 Q6P1J9;A0A1B0GUB2;B4DV47;A0A0S2Z5M9;A0A0S2Z5N1 Q6P1J9 199 209 CDC73 Parafibromin yes no 2 0.00023485 98.943 2 1 0.7171 0.88883 1.3743 2 Median 0.7171 0.88883 1.3743 2 0 Median NaN NaN NaN 0 0 Median 38621000 18704000 19917000 31876000 18704000 13172000 6745200 0 6745200 11668 1590 11984 41904;41905;41906 62863;62864;62865;62866 62864 4 TDLEMQIEGLK VNGLRRVLDELTLARTDLEMQIEGLKEELA TLARTDLEMQIEGLKEELAYLRKNHEEEML R T D L K E 0 0 0 1 0 1 2 1 0 1 2 1 1 0 0 0 1 0 0 0 0 0 11 0 1275.6381 CON__P08779;P08779;B4DWU0;Q16195 CON__P08779 235 245 KRT16;keratin Keratin, type I cytoskeletal 16 no no 2 0.022065 50.108 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6294300 6294300 0 0 0 0 6294300 6294300 0 + 11669 958 11985 41907 62867 62867 335 1 TDLLLEPYNK HIFYYLLSGAGEHLKTDLLLEPYNKYRFLS GEHLKTDLLLEPYNKYRFLSNGHVTIPGQQ K T D N K Y 0 0 1 1 0 0 1 0 0 0 3 1 0 0 1 0 1 0 1 0 0 0 10 0 1204.634 A0A024R1N1;P35579;Q86XU5;B4E3S1 A0A024R1N1 290 299 MYH9 Myosin-9 yes no 2 6.939E-36 189.7 3 2 0.99997 1.2997 78.206 5 Median 0.96802 1.2611 4.4318 3 0 Median 3.4235 5.1746 14.25 2 0 Median 253500000 120940000 132560000 223500000 114620000 108880000 30002000 6322200 23680000 11670 61 11986 41908;41909;41910;41911;41912 62868;62869;62870;62871;62872;62873;62874;62875 62871 8 TDLSTTVATPSSGLK PPPDPQLLVSESSQRTDLSTTVATPSSGLK TDLSTTVATPSSGLKKRPISRLQTRKNKKL R T D L K K 1 0 0 1 0 0 0 1 0 0 2 1 0 0 1 3 4 0 0 1 0 0 15 0 1476.7672 Q03164;B4E012 Q03164 3205 3219 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 7.2693E-05 84.605 3 2 1.0106 1.2793 13.182 5 Median 0.97238 1.231 3.8986 3 0 Median 1.0278 1.5556 2.3255 2 0 Median 52651000 26645000 26006000 22024000 10879000 11145000 30627000 15766000 14861000 11671 1438 11987 41913;41914;41915;41916;41917 62876;62877;62878;62879;62880;62881;62882;62883 62878 8 TDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHK YGGGSEGGRAPKRLKTDNAGDQHGGGGGGG AGGGGGGENYDDPHKTPASPVVHIRGLIDG K T D H K T 4 0 2 4 0 1 1 17 2 0 0 1 0 0 1 0 1 0 1 0 0 0 35 0 2980.1953 B2R959;Q6NTA2;P14866 B2R959 32 66 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 3;4 4.8473E-35 127.67 5 4 0.6833 0.86524 84.271 9 Median 0.55455 0.69482 44.981 5 0 Median 1.6878 2.5226 3.5899 4 0 Median 99487000 53791000 45696000 62457000 40247000 22210000 37030000 13544000 23486000 11672 719 11988 41918;41919;41920;41921;41922;41923;41924;41925;41926 62884;62885;62886;62887;62888;62889;62890;62891;62892;62893;62894;62895;62896 62885 12 TDNSSLSSPLNPK KNTGSPDRKPSKKSKTDNSSLSSPLNPKLW SKTDNSSLSSPLNPKLWCHVHLKKSLSGSP K T D P K L 0 0 2 1 0 0 0 0 0 0 2 1 0 0 2 4 1 0 0 0 0 0 13 0 1358.6678 Q9UIG0 Q9UIG0 323 335 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.00044819 96.113 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12556000 0 12556000 12556000 0 12556000 0 0 0 11673 1786 11989 41927;41928 62897;62898;62899 62899 3 TDPTTLTDEEINR SDIQIRRLKRLGIEKTDPTTLTDEEINRFA EKTDPTTLTDEEINRFARLDIDPETITWQR K T D N R F 0 1 1 2 0 0 2 0 0 1 1 0 0 0 1 0 4 0 0 0 0 0 13 0 1503.7053 A0A024R652;F5H2F4;B7Z809;P11586 A0A024R652 505 517 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.007323 67.08 2 0.55222 0.78045 8.2437 2 Median 0.55222 0.78045 8.2437 2 0 Median NaN NaN NaN 0 0 Median 9946100 6310300 3635800 9946100 6310300 3635800 0 0 0 11674 154 11990 41929;41930 62900;62901;62902 62902 3 TDQADGPREPPQSAR ASSPETPSAGQQEAKTDQADGPREPPQSAR TDQADGPREPPQSARRKRSYKQAVSELDEE K T D A R R 2 2 0 2 0 2 1 1 0 0 0 0 0 0 3 1 1 0 0 0 0 0 15 1 1623.7601 Q9NQS7;B3KPD3 Q9NQS7 434 448 INCENP Inner centromere protein yes no 3 1.1617E-15 106.52 4 3 0.85235 1.1748 9.7359 7 Median 0.88597 1.227 1.8834 4 0 Linear 0.71362 1.0305 5.9675 3 0 Median 115700000 61812000 53888000 74457000 38320000 36137000 41243000 23492000 17751000 11675 1752 11991 41931;41932;41933;41934;41935;41936;41937 62903;62904;62905;62906;62907;62908;62909;62910;62911;62912;62913;62914 62906 12 TDQFLVTDSGR SAGPEGLLGVEQSDKTDQFLVTDSGRTVIL QSDKTDQFLVTDSGRTVILYKVSDQKPLGS K T D G R T 0 1 0 2 0 1 0 1 0 0 1 0 0 1 0 1 2 0 0 1 0 0 11 0 1237.5939 Q9H8H0;J3QLQ6 Q9H8H0 31 41 NOL11 Nucleolar protein 11 yes no 2 1.8358E-05 103.31 4 2 0.76244 1.1051 18.673 6 Median 0.85624 1.1832 22.269 4 0 Median 0.69654 1.0287 3.1195 2 0 Median 54205000 30643000 23562000 24924000 13541000 11383000 29281000 17102000 12179000 11676 1743 11992 41938;41939;41940;41941;41942;41943 62915;62916;62917;62918;62919;62920;62921;62922;62923;62924;62925;62926 62922 12 TDSEATNIYLQLSK LTSLDIPATYLTGDKTDSEATNIYLQLSKK KTDSEATNIYLQLSKKDPIIKLLYVTPEKI K T D S K K 1 0 1 1 0 1 1 0 0 1 2 1 0 0 0 2 2 0 1 0 0 0 14 0 1581.7886 H0YNU5;B2RAN0;P54132;B7ZKN7;B7Z2X2 H0YNU5 742 755 BLM Bloom syndrome protein yes no 2 0.017731 74.537 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4173200 4173200 0 4173200 4173200 0 0 0 0 11677 725 11993 41944;41945;41946 62927;62928;62929;62930 62930 4 TDTESELDLISR RMFGIPVVVAVNAFKTDTESELDLISRLSR AFKTDTESELDLISRLSREHGAFDAVKCTH K T D S R L 0 1 0 2 0 0 2 0 0 1 2 0 0 0 0 2 2 0 0 0 0 0 12 0 1377.6624 A0A024R652;F5H2F4;B7Z809;P11586 A0A024R652 761 772 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.00099033 79.659 1 1 0.51143 0.71331 NaN 1 Median 0.51143 0.71331 NaN 1 0 Median NaN NaN NaN 0 0 Median 8745300 1978700 6766600 2936900 1978700 958130 5808500 0 5808500 11678 154 11994 41947;41948 62931;62932 62932 2 TDTLEDLFPTTK DALIDSMSLAKKDEKTDTLEDLFPTTKIPN DEKTDTLEDLFPTTKIPNPRFQRLFQCLLH K T D T K I 0 0 0 2 0 0 1 0 0 0 2 1 0 1 1 0 4 0 0 0 0 0 12 0 1379.682 P13010;Q53T09 P13010 470 481 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 1.071E-40 219.72 6 2 0.58359 0.77769 16.271 6 Median 0.58359 0.76545 12.455 4 0 Median 0.58852 0.93155 4.3914 2 0 Median 748630000 439250000 309380000 536370000 305640000 230730000 212260000 133610000 78652000 11679 1262 11995 41949;41950;41951;41952;41953;41954;41955;41956 62933;62934;62935;62936;62937;62938;62939;62940;62941;62942;62943;62944;62945 62934 13 TDVAVQIISNIYHNFPEQR QPGLTMVVGPPGTGKTDVAVQIISNIYHNF VQIISNIYHNFPEQRALIVTHSNQALNQLF K T D Q R A 1 1 2 1 0 2 1 0 1 3 0 0 0 1 1 1 1 0 1 2 0 0 19 0 2243.1335 B0AZM4;A8K6F0;A0A024R9L1;O60306 B0AZM4 830 848 AQR Intron-binding protein aquarius yes no 3 1.3788E-15 128.94 1 0.45085 0.63139 NaN 1 Median 0.45085 0.63139 NaN 1 0 Median NaN NaN NaN 0 0 Median 2093100 1512100 581010 2093100 1512100 581010 0 0 0 11680 226 11996 41957 62946 62946 1 TDVLTGLSIR QEQEIDGKSLLLMQRTDVLTGLSIRLGPAL LLMQRTDVLTGLSIRLGPALKIYEHHIKVL R T D I R L 0 1 0 1 0 0 0 1 0 1 2 0 0 0 0 1 2 0 0 1 0 0 10 0 1073.6081 Q6SPF0;E9PIW9;F8WDT5 Q6SPF0 499 508 SAMD1 Atherin yes no 2 3.2155E-05 103.7 2 0.58943 0.92837 9.1581 2 Median NaN NaN NaN 0 0 Median 0.58943 0.92837 9.1581 2 0 Median 63884000 41571000 22313000 0 0 0 63884000 41571000 22313000 11681 1599 11997 41958;41959 62947;62948 62947 2 TDVSTEHPPFYYNIHR RKSNEMITNLGKKQKTDVSTEHPPFYYNIH DVSTEHPPFYYNIHRHSIKGMNMPKLKKFL K T D H R H 0 1 1 1 0 0 1 0 2 1 0 0 0 1 2 1 2 0 2 1 0 0 16 0 1974.9224 B4DXX1;B2R713;Q7Z2T5 B4DXX1 469 484 TRMT1L TRMT1-like protein yes no 3 0.034085 17.701 1 0.31823 0.43313 NaN 1 Median 0.31823 0.43313 NaN 1 0 Median NaN NaN NaN 0 0 Median 9300100 7101700 2198400 9300100 7101700 2198400 0 0 0 11682 702 11998 41960 62949;62950 62950 2 TDYNASVSVPDSSGPER GAVIGKGGKNIKALRTDYNASVSVPDSSGP YNASVSVPDSSGPERILSISADIETIGEIL R T D E R I 1 1 1 2 0 0 1 1 0 0 0 0 0 0 2 4 1 0 1 2 0 0 17 0 1779.7911 A0A024R228;P61978;B4DUQ1;Q5EC54;Q5T6W2 A0A024R228 70 86 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 2 4.2982E-34 187.74 4 2 2.6833 4.143 124.43 6 Linear 0.42025 0.56631 9.1721 4 0 Median 3.8712 6.1302 8.9263 2 0 Median 148240000 65791000 82448000 77820000 51643000 26178000 70419000 14149000 56270000 11683 77 11999 41961;41962;41963;41964;41965;41966 62951;62952;62953;62954;62955;62956;62957;62958;62959;62960;62961;62962 62954 12 TEAEQQITEVFVLAER PENKGISLRSRRQNKTEAEQQITEVFVLAE EAEQQITEVFVLAERIEINRNEKKPMKTSP K T E E R I 2 1 0 0 0 2 4 0 0 1 1 0 0 1 0 0 2 0 0 2 0 0 16 0 1861.9422 P46013;B4DRH3 P46013 3099 3114 MKI67 Antigen KI-67 yes no 2 1.56E-168 312.05 4 2 0.83732 1.1557 39.277 6 Median 0.66765 0.91625 32.2 4 0 Median 0.95303 1.5828 2.6165 2 0 Median 1553100000 829800000 723280000 884880000 487090000 397780000 668210000 342710000 325500000 11684 1342 12000 41967;41968;41969;41970;41971;41972 62963;62964;62965;62966;62967;62968;62969;62970;62971;62972;62973 62965 11 TEALTQAFR TAIAGSEIFSLEMSKTEALTQAFRRSIGVR SLEMSKTEALTQAFRRSIGVRIKEETEIIE K T E F R R 2 1 0 0 0 1 1 0 0 0 1 0 0 1 0 0 2 0 0 0 0 0 9 0 1035.5349 Q9Y230;B3KNL2;M0R0Y3;B4DW30;X6R2L4;M0QXI6 Q9Y230 116 124 RUVBL2 RuvB-like 2 yes no 2 2.2368E-11 159.2 4 3 0.5735 0.76411 8.22 3 Median 0.5735 0.76411 8.22 3 0 Median NaN NaN NaN 0 0 Median 67362000 36937000 30426000 57665000 36937000 20728000 9697700 0 9697700 11685 1801 12001 41973;41974;41975;41976;41977;41978;41979 62974;62975;62976;62977;62978;62979;62980;62981;62982 62976 9 TEDFIIDTLELR RSFLGLTCLMQISTRTEDFIIDTLELRSDM STRTEDFIIDTLELRSDMYILNESLTDPAI R T E L R S 0 1 0 2 0 0 2 0 0 2 2 0 0 1 0 0 2 0 0 0 0 0 12 0 1463.7508 Q01780;B4DKG8;B4DFE4;Q59G73 Q01780 335 346 EXOSC10 Exosome component 10 yes no 2 2.9879E-07 141.95 3 3 0.54208 0.79684 33.228 6 Median 0.67281 0.89564 3.5319 3 0 Median 0.40786 0.6703 28.985 3 0 Plateau 71596000 46850000 24746000 17367000 10272000 7094400 54229000 36577000 17652000 11686 1433 12002 41980;41981;41982;41983;41984;41985 62983;62984;62985;62986;62987;62988;62989;62990 62984 8 TEDGGEFEEGASENNAK GMAFEEPIDEKKFEKTEDGGEFEEGASENN DGGEFEEGASENNAKESSPEKEAEEGCPEK K T E A K E 2 0 2 1 0 0 5 3 0 0 0 1 0 1 0 1 1 0 0 0 0 0 17 0 1782.718 O43719;B4DRS4 O43719 434 450 HTATSF1 HIV Tat-specific factor 1 yes no 2 8.5304E-85 250.81 5 2 0.54743 0.69328 95.469 4 Median 0.53027 0.67333 11.375 3 0 Median 2.9887 4.3516 NaN 1 0 Median 26722000 11254000 15468000 15130000 9486500 5643900 11592000 1767500 9824500 11687 1187 12003 41986;41987;41988;41989;41990;41991;41992 62991;62992;62993;62994;62995;62996;62997;62998;62999;63000;63001 62993 11 TEDPDLPAFYFDPLINPISHR VHLTWYHTPNVVFIKTEDPDLPAFYFDPLI PAFYFDPLINPISHRHSVKSQEPLPDDDEE K T E H R H 1 1 1 3 0 0 1 0 1 2 2 0 0 2 4 1 1 0 1 0 0 0 21 0 2456.2012 Q6P2Q9;I3L0J9 Q6P2Q9 342 362 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 2.6504E-13 121.82 4 0.66329 0.88223 11.522 3 Plateau 0.66329 0.88223 11.522 3 0 Plateau NaN NaN NaN 0 0 Median 70546000 43640000 26906000 70546000 43640000 26906000 0 0 0 11688 1592 12004 41993;41994;41995;41996 63002;63003;63004;63005;63006;63007;63008;63009;63010;63011;63012 63004 11 TEEADLLQTK TAEKYRQLKQQWEMKTEEADLLQTKLQQSS QWEMKTEEADLLQTKLQQSSYHKQQEELDA K T E T K L 1 0 0 1 0 1 2 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 10 0 1146.5768 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;B3KM27 A0A024R158 723 732 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 5.5266E-28 183.43 3 2 0.65671 0.93998 7.2495 5 Median 0.70931 0.92526 4.916 3 0 Plateau 0.63001 1.0012 0.64862 2 0 Median 464950000 274700000 190250000 306080000 176460000 129620000 158880000 98242000 60634000 11689 50 12005 41997;41998;41999;42000;42001 63013;63014;63015;63016;63017;63018;63019;63020;63021 63017 9 TEEALQLYNQIIK IIHGQMAYILQLQGRTEEALQLYNQIIKLK GRTEEALQLYNQIIKLKPTDVGLLAVIANN R T E I K L 1 0 1 0 0 2 2 0 0 2 2 1 0 0 0 0 1 0 1 0 0 0 13 0 1561.8352 V9HWK0;O76094;Q86X80;A0PJJ5;Q71V07;Q0D2M6;D6RDY6 V9HWK0 242 254 HEL103;SRP72 Signal recognition particle subunit SRP72 yes no 2 5.6972E-08 96.143 2 0.68733 0.87248 NaN 1 Median 0.68733 0.87248 NaN 1 0 Median NaN NaN NaN 0 0 Median 18524000 13784000 4739600 18524000 13784000 4739600 0 0 0 11690 1211 12006 42002;42003 63022;63023 63022 2 TEEASSGFLPGDR IYQYRRPVDSYDIPKTEEASSGFLPGDRNK PKTEEASSGFLPGDRNKSRSTTELDDYSTN K T E D R N 1 1 0 1 0 0 2 2 0 0 1 0 0 1 1 2 1 0 0 0 0 0 13 0 1364.6208 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424 A0A1P7ZIM8 1020 1032 LMO7 LIM domain only protein 7 yes no 2 1.9032E-08 134.57 3 2 0.50356 0.66968 2.8462 3 Plateau 0.50356 0.66968 2.8462 3 0 Plateau NaN NaN NaN 0 0 Median 57563000 34825000 22738000 51956000 34825000 17132000 5606400 0 5606400 11691 525 12007 42004;42005;42006;42007;42008 63024;63025;63026;63027;63028;63029;63030;63031;63032;63033;63034;63035 63030 12 TEEELQAILEAK GVGEGKVMFHSFVSKTEEELQAILEAKEKK VSKTEEELQAILEAKEKKLRLKAQRQAQQA K T E A K E 2 0 0 0 0 1 4 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 12 0 1372.7086 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;H7C446 A0A0A6YYI3 304 315 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 2.1826E-41 240.38 3 2 0.68565 0.86068 11.607 5 Median 0.76859 0.95469 6.1175 3 0 Median 0.49983 0.76023 3.0267 2 0 Median 166420000 95435000 70986000 131050000 70736000 60316000 35368000 24698000 10670000 11692 408 12008 42009;42010;42011;42012;42013 63036;63037;63038;63039;63040;63041;63042;63043 63037 8 TEEGEIDYSAEEGENRR YEEDREYESQAKRLKTEEGEIDYSAEEGEN EGEIDYSAEEGENRREATPRGGGDGGGGGR K T E R R E 1 2 1 1 0 0 6 2 0 1 0 0 0 0 0 1 1 0 1 0 0 0 17 1 1982.8454 B7WPG3;C9IYN3;A8K894;D6W592;A0A0S2Z6K1;A0A0S2Z5U3;Q8WVV9;A0A0S2Z610 B7WPG3 27 43 HNRNPLL;HNRPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 3 0.011642 35.329 1 4.1222 5.4233 NaN 1 Median NaN NaN NaN 0 0 Median 4.1222 5.4233 NaN 1 0 Median 2232200 762880 1469300 0 0 0 2232200 762880 1469300 11693 483 12009 42014 63044 63044 0 TEEGPTLSYGR PENLPQILLQLKRRRTEEGPTLSYGRDGRS KRRRTEEGPTLSYGRDGRSATREPPYRVPR R T E G R D 0 1 0 0 0 0 2 2 0 0 1 0 0 0 1 1 2 0 1 0 0 0 11 0 1208.5673 A0A0R4J2E8;A8MXP9;P43243;D6REM6;Q68D11;D6R991 A0A0R4J2E8 150 160 MATR3;DKFZp686K23100 Matrin-3 yes no 2 2.8516E-23 186.41 4 1 0.56198 0.75212 108.75 4 Median 0.6247 0.83378 24.511 3 0 Plateau 3.9467 5.633 NaN 1 0 Median 59065000 33257000 25808000 48732000 31288000 17444000 10332000 1968300 8364100 11694 445 12010 42015;42016;42017;42018;42019 63045;63046;63047;63048;63049;63050;63051 63047 7 TEEIAEEEETVFPK QTEEKEKKEKPKSDKTEEIAEEEETVFPKA KTEEIAEEEETVFPKAKQVKKKAEPSEVDM K T E P K A 1 0 0 0 0 0 6 0 0 1 0 1 0 1 1 0 2 0 0 1 0 0 14 0 1649.7672 Q9NR30;Q3SWU7 Q9NR30 41 54 DDX21 Nucleolar RNA helicase 2 yes no 2 1.5614E-21 178.46 4 2 0.7149 0.90679 24.548 6 Median 0.77594 0.98841 8.2235 4 0 Median 0.3794 0.60742 0.50789 2 0 Median 135480000 95986000 39493000 23811000 13200000 10612000 111670000 82787000 28882000 11695 1756 12011 42020;42021;42022;42023;42024;42025 63052;63053;63054;63055;63056;63057;63058;63059;63060;63061 63054 10 TEELEEESFPER EGLVYAPPGKEKQRKTEELEEESFPERSKK QRKTEELEEESFPERSKKEDRGKRSEGGHR K T E E R S 0 1 0 0 0 0 6 0 0 0 1 0 0 1 1 1 1 0 0 0 0 0 12 0 1493.6522 Q9Y2W1 Q9Y2W1 487 498 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2 6.8478E-32 208.33 4 2 0.56112 0.7476 29.315 5 Median 0.56112 0.7476 4.94 3 0 Plateau 0.85198 1.2299 7.8071 2 0 Median 76805000 45447000 31357000 50733000 30881000 19852000 26072000 14567000 11505000 11696 1809 12012 42026;42027;42028;42029;42030;42031 63062;63063;63064;63065;63066;63067;63068;63069;63070;63071;63072;63073 63062 12 TEELNREVATNSELVQSGK AEKNRKDAEEWFFTKTEELNREVATNSELV NREVATNSELVQSGKSEISELRRTMQNLEI K T E G K S 1 1 2 0 0 1 4 1 0 0 2 1 0 0 0 2 2 0 0 2 0 0 19 1 2103.0444 CON__P02533;P02533;A0A024R1X6;K7ESE1;CON__Q04695;Q04695;F5GWP8;CON__Q9QWL7;Q14666 CON__P02533 310 328 KRT14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 3 0.00011862 102.79 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8686000 7554900 1131100 1131100 0 1131100 7554900 7554900 0 + 11697 949;965 12013 42032;42033 63074;63075;63076 63076 3 TEESDFLLLVLK LQGVSHIIVDEVHERTEESDFLLLVLKDIV HERTEESDFLLLVLKDIVSQRPGLQVILMS R T E L K D 0 0 0 1 0 0 2 0 0 0 4 1 0 1 0 1 1 0 0 1 0 0 12 0 1405.7704 Q6P158;B4DKW2;Q59G60 Q6P158 674 685 DHX57 Putative ATP-dependent RNA helicase DHX57 yes no 2 0.0073079 47.187 1 0.76944 0.97086 NaN 1 Median 0.76944 0.97086 NaN 1 0 Median NaN NaN NaN 0 0 Median 1844800 1071200 773580 1844800 1071200 773580 0 0 0 11698 1589 12014 42034 63077 63077 1 TEFLSLLAK LHEQEYDSLLESVFKTEFLSLLAKRYEEKT LESVFKTEFLSLLAKRYEEKTQKQLPLKFS K T E A K R 1 0 0 0 0 0 1 0 0 0 3 1 0 1 0 1 1 0 0 0 0 0 9 0 1020.5855 Q4KMR3;Q12965 Q4KMR3 851 859 MYO1E Unconventional myosin-Ie yes no 1;2 0.0069504 111.95 5 0.62911 0.79402 NaN 1 Median 0.62911 0.79402 NaN 1 0 Median NaN NaN NaN 0 0 Median 30471000 24518000 5952800 30471000 24518000 5952800 0 0 0 11699 1459 12015 42035;42036;42037;42038;42039 63078;63079;63080;63081;63082 63080 5 TEFTLTEAVVESSR LTPLESAINVLEMIKTEFTLTEAVVESSRK KTEFTLTEAVVESSRKLVKEAAVIICIKNK K T E S R K 1 1 0 0 0 0 3 0 0 0 1 0 0 1 0 2 3 0 0 2 0 0 14 0 1567.773 Q15554;H3BR06;J3KSZ6;H3BTA7;V9GYM1 Q15554 183 196 TERF2 Telomeric repeat-binding factor 2 yes no 2 0.0026394 85.522 3 0.85172 1.1927 NaN 1 Median 0.85172 1.1927 NaN 1 0 Median NaN NaN NaN 0 0 Median 1342300 667090 675180 1342300 667090 675180 0 0 0 11700 1513 12016 42040;42041;42042 63083;63084;63085 63083 3 TEFVEGEEHDHR SRSHSVFTLVMTQTKTEFVEGEEHDHRITS QTKTEFVEGEEHDHRITSRINLIDLAGSER K T E H R I 0 1 0 1 0 0 4 1 2 0 0 0 0 1 0 0 1 0 0 1 0 0 12 0 1483.6328 Q15058 Q15058 583 594 KIF14 Kinesin-like protein KIF14 yes yes 3 0.0011725 87.363 1 0.69815 0.95295 NaN 1 Median 0.69815 0.95295 NaN 1 0 Median NaN NaN NaN 0 0 Median 5993700 3578600 2415200 5993700 3578600 2415200 0 0 0 11701 1504 12017 42043 63086 63086 1 TEGTAHSSNTSDVDFTGASSAK ISENPTLDLPCSIGRTEGTAHSSNTSDVDF SNTSDVDFTGASSAKETTSSSISRHYGLSD R T E A K E 3 0 1 2 0 0 1 2 1 0 0 1 0 1 0 5 4 0 0 1 0 0 22 0 2168.9458 B4DZG1;Q9Y483;Q96G26 B4DZG1 340 361 MTF2 Metal-response element-binding transcription factor 2 yes no 2;3 1.8826E-12 92.136 5 3 0.85117 1.1548 21.02 7 Median 0.87647 1.1005 29.382 4 0 Median 0.81587 1.2057 5.1052 3 0 Median 88687000 38968000 49719000 49253000 18227000 31026000 39434000 20741000 18693000 11702 878 12018 42044;42045;42046;42047;42048;42049;42050;42051 63087;63088;63089;63090;63091;63092;63093;63094;63095;63096;63097;63098;63099;63100;63101;63102 63102 16 TEIIILATR EDGYSGVEVRVTPTRTEIIILATRTQNVLG RVTPTRTEIIILATRTQNVLGEKGRRIREL R T E T R T 1 1 0 0 0 0 1 0 0 3 1 0 0 0 0 0 2 0 0 0 0 0 9 0 1028.623 P23396;Q53G83;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;H0YEU2;H0YF32;E9PQ96;E9PJH4;E9PK82 P23396 46 54 RPS3 40S ribosomal protein S3 yes no 2 0.0043445 75.825 4 5 1.1523 1.5851 51.791 8 Median 0.74331 1.004 9.2749 4 0 Median 1.7624 2.619 9.8454 4 0 Median 230880000 122040000 108840000 165540000 95735000 69803000 65339000 26305000 39035000 11703 1293 12019 42052;42053;42054;42055;42056;42057;42058;42059;42060 63103;63104;63105;63106;63107;63108;63109;63110;63111;63112;63113 63105 11 TEIISEVNHLDNDK ESKVNKKLRQKVNRKTEIISEVNHLDNDKS KTEIISEVNHLDNDKSIEYTVKSHSLFLTQ K T E D K S 0 0 2 2 0 0 2 0 1 2 1 1 0 0 0 1 1 0 0 1 0 0 14 0 1625.7897 Q562F6;B7Z7S9 Q562F6 720 733 SGOL2 Shugoshin-like 2 yes no 2 0.0083496 98.407 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1792800 1034600 758200 1792800 1034600 758200 0 0 0 11704 1546 12020 42061;42062;42063 63114;63115;63116 63114 3 TEILPPFFK KQCCGTDGVEANYIKTEILPPFFKHFWQHR EANYIKTEILPPFFKHFWQHRMALDRRNYR K T E F K H 0 0 0 0 0 0 1 0 0 1 1 1 0 2 2 0 1 0 0 0 0 0 9 0 1090.6063 O75533 O75533 808 816 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.008004 71.501 3 0.54454 0.68613 19.577 3 Median 0.54454 0.68613 19.577 3 0 Median NaN NaN NaN 0 0 Median 24687000 14432000 10255000 24687000 14432000 10255000 0 0 0 11705 1204 12021 42064;42065;42066 63117;63118;63119;63120 63120 4 TEKPPPEPGKPK CCEHDLGAASVRSTKTEKPPPEPGKPKGKR STKTEKPPPEPGKPKGKRRRRRGWRRVTEG K T E P K G 0 0 0 0 0 0 2 1 0 0 0 3 0 0 5 0 1 0 0 0 0 0 12 2 1303.7136 O96028 O96028 1338 1349 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 3 9.0228E-12 155.99 3 0.88396 0.99995 22.391 3 Median 0.88396 0.99995 22.391 3 0 Median NaN NaN NaN 0 0 Median 26843000 12776000 14067000 26843000 12776000 14067000 0 0 0 11706 1228 12022 42067;42068;42069 63121;63122;63123;63124 63121 4 TELEDTLDSTAAQQELR EKQKRDLGEELEALKTELEDTLDSTAAQQE LEDTLDSTAAQQELRSKREQEVNILKKTLE K T E L R S 2 1 0 2 0 2 3 0 0 0 3 0 0 0 0 1 3 0 0 0 0 0 17 0 1918.912 A0A024R1N1;P35579;Q86XU5;A0A0U4BW16 A0A024R1N1 1146 1162 MYH9 Myosin-9 no no 2 8.6581E-170 322.7 5 2 0.96034 1.3119 84.112 6 Median 0.94244 1.2945 2.489 4 0 Median 4.1812 6.5749 1.7186 2 0 Median 268780000 119050000 149730000 205770000 106660000 99114000 63010000 12397000 50613000 11707 61;490 12023 42070;42071;42072;42073;42074;42075;42076 63125;63126;63127;63128;63129;63130;63131;63132;63133;63134;63135;63136;63137 63127 13 TELEDTLDTTAAQQELR EKQKRDLSEELEALKTELEDTLDTTAAQQE LEDTLDTTAAQQELRTKREQEVAELKKALE K T E L R T 2 1 0 2 0 2 3 0 0 0 3 0 0 0 0 0 4 0 0 0 0 0 17 0 1932.9276 P35580 P35580 1153 1169 MYH10 Myosin-10 yes yes 2 0.0019799 66.498 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1011700 1011700 0 1011700 1011700 0 0 0 0 11708 1320 12024 42077 63138 63138 1 TELFCSVNCLSAYR RSSAEMIENTNSLGKTELFCSVNCLSAYRV KTELFCSVNCLSAYRVKMVTSAGVQVQCNS K T E Y R V 1 1 1 0 2 0 1 0 0 0 2 0 0 1 0 2 1 0 1 1 0 0 14 0 1718.7756 Q5VZL5 Q5VZL5 553 566 ZMYM4 Zinc finger MYM-type protein 4 yes yes 2 0.031952 59.155 1 0.92231 1.2897 NaN 1 Median 0.92231 1.2897 NaN 1 0 Median NaN NaN NaN 0 0 Median 2167900 1316000 851900 2167900 1316000 851900 0 0 0 11709 1580 12025 42078 63139 63139 1 TELFIAAEGIHTGQFVYCGK LAKVVFRDPYRFKKRTELFIAAEGIHTGQF AAEGIHTGQFVYCGKKAQLNIGNVLPVGTM R T E G K K 2 0 0 0 1 1 2 3 1 2 1 1 0 2 0 0 2 0 1 1 0 0 20 0 2240.0936 P62917;B4DVG7;E9PKZ0;E9PKU4;G3V1A1 P62917 73 92 RPL8 60S ribosomal protein L8 yes no 2;3 1.2372E-24 159.12 6 2 0.71297 0.89137 23.249 8 Median 0.72031 0.90797 7.2582 6 0 Median 0.36659 0.56274 11.751 2 0 Median 161020000 97524000 63493000 118790000 64973000 53818000 42226000 32551000 9674900 11710 1417 12026 42079;42080;42081;42082;42083;42084;42085;42086 63140;63141;63142;63143;63144;63145;63146;63147;63148;63149;63150;63151;63152;63153;63154 63147 15 TELGLDLGLEPK ______________________________ FLRTELGLDLGLEPKRYPGWVILVGTGALG R T E P K R 0 0 0 1 0 0 2 2 0 0 4 1 0 0 1 0 1 0 0 0 0 0 12 0 1283.6973 E5RJU9;A0A024R9D2;Q86UE4 E5RJU9 11 22 MTDH Protein LYRIC yes no 2 0.0036515 84.658 2 1 1.4202 1.8408 NaN 1 Median 1.4202 1.8408 NaN 1 0 Median NaN NaN NaN 0 0 Median 13599000 10840000 2758600 9363100 6604600 2758600 4235600 4235600 0 11711 218 12027 42087;42088;42089 63155;63156;63157 63156 3 TELQSPEHPLDQHYR LEALGDIEIAIKLVKTELQSPEHPLDQHYR TELQSPEHPLDQHYRNLHCALRPLDHESYE K T E Y R N 0 1 0 1 0 2 2 0 2 0 2 0 0 0 2 1 1 0 1 0 0 0 15 0 1848.8755 B4DV82;G3V167;A8K214;Q9UGN5;H0YH02 B4DV82 262 276 PARP2 Poly [ADP-ribose] polymerase 2 yes no 2;3 0.0038384 105.17 2 1.1439 1.591 NaN 1 Median 1.1439 1.591 NaN 1 0 Median NaN NaN NaN 0 0 Median 6239600 2875100 3364500 6239600 2875100 3364500 0 0 0 11712 581 12028 42090;42091 63158;63159 63158 1 TELTQIK SAKIKLKSSELQAIKTELTQIKSNIDALLS SSELQAIKTELTQIKSNIDALLSRLEQIAA K T E I K S 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 0 2 0 0 0 0 0 7 0 831.47018 A8K4T9;Q53GL6;Q9UKM9;Q5QPL9;Q5QPM0 A8K4T9 176 182 RALY RNA-binding protein Raly yes no 2 0.01617 83.614 1 1.1264 1.3838 NaN 1 Median 1.1264 1.3838 NaN 1 0 Median NaN NaN NaN 0 0 Median 34162000 17357000 16805000 34162000 17357000 16805000 0 0 0 11713 608 12029 42092 63160 63160 1 TEMEDLMSSKDDVGK MEQKAELERLNKQFRTEMEDLMSSKDDVGK TEMEDLMSSKDDVGKSVHELEKSKRALEQQ R T E G K S 0 0 0 3 0 0 2 1 0 0 1 2 2 0 0 2 1 0 0 1 0 0 15 1 1683.7332 A0A024R1N1;P35579;Q6ZNL4;A0A0U4BW16 A0A024R1N1 1504 1518 MYH9;FLJ00279 Myosin-9 no no 2;3 3.0312E-05 63.682 3 3.7113 5.8149 6.1771 3 Median NaN NaN NaN 0 0 Median 3.7113 5.8149 6.1771 3 0 Median 21564000 4339600 17225000 0 0 0 21564000 4339600 17225000 11714 61;490 12030 42093;42094;42095 63161;63162;63163 63162 31;32 3 TEMENEFVLIK VEDFKNKYEDEINKRTEMENEFVLIKKDVD INKRTEMENEFVLIKKDVDEAYMNKVELES R T E I K K 0 0 1 0 0 0 3 0 0 1 1 1 1 1 0 0 1 0 0 1 0 0 11 0 1351.6694 CON__P05787;P05787;Q969I0;F8VUG2;F8VP67;CON__H-INV:HIT000016045;F8W1U3 CON__P05787 187 197 KRT8 Keratin, type II cytoskeletal 8 no no 2 0.0019719 80.688 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10908000 10908000 0 0 0 0 10908000 10908000 0 + 11715 955;1068 12031 42096;42097 63164;63165 63164 329 2 TEMQDNTYPEILR RPGKCFRLYTEKAYKTEMQDNTYPEILRSN YKTEMQDNTYPEILRSNLGSVVLQLKKLGI K T E L R S 0 1 1 1 0 1 2 0 0 1 1 0 1 0 1 0 2 0 1 0 0 0 13 0 1608.7454 O43143;B4E0S6 O43143 492 504 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 0.00098199 54.471 2 0.67126 0.96815 3.5177 2 Median NaN NaN NaN 0 0 Median 0.67126 0.96815 3.5177 2 0 Median 24955000 14965000 9990200 0 0 0 24955000 14965000 9990200 11716 1180 12032 42098;42099 63166;63167;63168;63169 63166 428 4 TENNDHINLK ______________________________ KEGVKTENNDHINLKVAGQDGSVVQFKIKR K T E L K V 0 0 3 1 0 0 1 0 1 1 1 1 0 0 0 0 1 0 0 0 0 0 10 0 1196.5786 A0A024R8S3;P61956 A0A024R8S3 12 21 SUMO2 Small ubiquitin-related modifier;Small ubiquitin-related modifier 2 yes no 2;3 2.2229E-71 239.66 8 3 0.75282 0.95212 30.58 10 Median 0.7427 0.9413 8.28 8 0 Median 1.1942 1.8553 2.872 2 0 Median 399670000 207720000 191960000 327520000 183870000 143650000 72158000 23848000 48309000 11717 203 12033 42100;42101;42102;42103;42104;42105;42106;42107;42108;42109;42110 63170;63171;63172;63173;63174;63175;63176;63177;63178;63179;63180;63181;63182;63183;63184;63185 63175 16 TENPLILIDEVDK GAMPGKIIQCLKKTKTENPLILIDEVDKIG TKTENPLILIDEVDKIGRGYQGDPSSALLE K T E D K I 0 0 1 2 0 0 2 0 0 2 2 1 0 0 1 0 1 0 0 1 0 0 13 0 1497.7926 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776 K7EJE8 452 464 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 2 0.00036582 74.326 4 2 0.60855 0.77079 9.4475 3 Median 0.60855 0.77079 9.4475 3 0 Median NaN NaN NaN 0 0 Median 27642000 10237000 17405000 18002000 10237000 7765900 9639600 0 9639600 11718 780 12034 42111;42112;42113;42114;42115;42116 63186;63187;63188;63189;63190;63191 63189 5 TENSLANENQQPIK LSRELSKELNHEIQRTENSLANENQQPIKS RTENSLANENQQPIKSEPESEGEEPKRPPG R T E I K S 1 0 3 0 0 2 2 0 0 1 1 1 0 0 1 1 1 0 0 0 0 0 14 0 1584.7744 A0A0C4DGG3;B7ZB05;B4DSN4;Q8NHM5 A0A0C4DGG3 329 342 KDM2B Lysine-specific demethylase 2B yes no 2 0.00052271 59.418 3 0.52722 0.73313 NaN 1 Median NaN NaN NaN 0 0 Median 0.52722 0.73313 NaN 1 0 Median 6821700 5033200 1788600 0 0 0 6821700 5033200 1788600 11719 426 12035 42117;42118;42119 63192;63193;63194;63195 63194 4 TEPATGFIDGDLIESFLDISRPK KIEHSFWRSFHTERKTEPATGFIDGDLIES DGDLIESFLDISRPKMQEVVANLQYDDGSG K T E P K M 1 1 0 3 0 0 2 2 0 3 2 1 0 2 2 2 2 0 0 0 0 0 23 1 2520.2748 Q16531;B4DSA8;B4DZP5 Q16531 1082 1104 DDB1 DNA damage-binding protein 1 yes no 3 2.968E-05 73.809 1 1.0197 1.3555 NaN 1 Median 1.0197 1.3555 NaN 1 0 Median NaN NaN NaN 0 0 Median 23847000 12653000 11194000 23847000 12653000 11194000 0 0 0 11720 1520 12036 42120 63196 63196 1 TEPEEVSIEDSAQSDLK TPSSSFLTTLKPRLKTEPEEVSIEDSAQSD PEEVSIEDSAQSDLKEVMVLNATESFVYEP K T E L K E 1 0 0 2 0 1 4 0 0 1 1 1 0 0 1 3 1 0 0 1 0 0 17 0 1875.8585 D3DUZ3;Q16666;A0A0A0MRB1 D3DUZ3 510 526 IFI16 Gamma-interferon-inducible protein 16 yes no 2 0.0030542 94.122 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 636320 0 636320 636320 0 636320 0 0 0 11721 984 12037 42121 63197 63197 1 TEPTAQQNLALQLAEK MASLDQPTQTVVMHRTEPTAQQNLALQLAE EPTAQQNLALQLAEKLGSLVENNERVFDHK R T E E K L 3 0 1 0 0 3 2 0 0 0 3 1 0 0 1 0 2 0 0 0 0 0 16 0 1753.921 A0A024QYX7;B3KNZ4;B4DRU0;B4DVU3;B4E2Z6;B4DDN4;B4DVQ5;A1KYQ7;A0A024QYU9;Q99613;B5ME19 A0A024QYX7 531 546 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2 0.00010639 99.669 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2793500 2793500 0 2793500 2793500 0 0 0 0 11722 3 12038 42122;42123 63198;63199 63199 2 TEQCLVALLHK VYNCRGSHVLSCMVKTEQCLVALLHKHLPG CMVKTEQCLVALLHKHLPGHPYVRRKRKKF K T E H K H 1 0 0 0 1 1 1 0 1 0 3 1 0 0 0 0 1 0 0 1 0 0 11 0 1310.7017 Q9UIG0 Q9UIG0 1432 1442 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 0.0032243 57.836 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63617000 0 63617000 63617000 0 63617000 0 0 0 11723 1786 12039 42124;42125 63200;63201;63202 63200 3 TEQEEDEELLTESSK EKQNLLSVGDYRHRRTEQEEDEELLTESSK TEQEEDEELLTESSKATNVCTRFEDSPSYV R T E S K A 0 0 0 1 0 1 6 0 0 0 2 1 0 0 0 2 2 0 0 0 0 0 15 0 1765.7741 O60264;B7ZAX9;B4DZC0;Q4W5G3 O60264 146 160 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 2.0582E-87 258.65 4 2 2.2984 2.9215 14.514 6 Median 2.2984 2.8837 6.3827 4 0 Median 2.2744 3.6424 6.4708 2 0 Median 270700000 86697000 184000000 160310000 52170000 108140000 110380000 34527000 75856000 11724 1189 12040 42126;42127;42128;42129;42130;42131 63203;63204;63205;63206;63207;63208;63209;63210;63211;63212;63213;63214;63215;63216 63205 14 TEQGGAHFSVSSLAEGSVTSVGSVNPAENFR FQDNHEDGPTAKKLKTEQGGAHFSVSSLAE SVTSVGSVNPAENFRVLVKQKKASFEEASN K T E F R V 3 1 2 0 0 1 3 4 1 0 1 0 0 2 1 6 2 0 0 4 0 0 31 0 3120.4748 P13010;Q53T09 P13010 569 599 XRCC5 X-ray repair cross-complementing protein 5 yes no 3 4.3939E-44 144.45 5 2 0.57369 0.81694 7.9568 6 Median 0.57945 0.79715 3.3198 4 0 Median 0.5579 0.92018 1.2464 2 0 Median 974860000 624150000 350710000 576220000 360890000 215340000 398640000 263270000 135370000 11725 1262 12041 42132;42133;42134;42135;42136;42137;42138 63217;63218;63219;63220;63221;63222;63223;63224;63225;63226;63227;63228;63229;63230;63231 63227 15 TEQLGLTR DEMEESTNRPRKKQKTEQLGLTRTPIVTLS RPRKKQKTEQLGLTRTPIVTLSGHMEAVSS K T E T R T 0 1 0 0 0 1 1 1 0 0 2 0 0 0 0 0 2 0 0 0 0 0 8 0 916.49779 Q53T99;Q9GZL7;B4DRY7 Q53T99 240 247 WDR12 Ribosome biogenesis protein WDR12 yes no 2 8.6566E-05 127.46 4 2 0.84632 1.1966 5.4374 6 Median 0.87076 1.1933 6.9962 4 0 Median 0.77048 1.2065 0.95279 2 0 Median 206210000 113720000 92496000 150560000 82791000 67766000 55657000 30927000 24729000 11726 1543 12042 42139;42140;42141;42142;42143;42144 63232;63233;63234;63235;63236;63237;63238;63239;63240;63241 63232 10 TESPATAAETASEELDNR DGASSDAEPEPPSGRTESPATAAETASEEL PATAAETASEELDNRSLEEILNSIPPPPPP R T E N R S 4 1 1 1 0 0 4 0 0 0 1 0 0 0 1 2 3 0 0 0 0 0 18 0 1890.8443 Q9NTJ3;Q6NSG3;Q58F29;Q6P169;C9JR83;C9JWF0;C9IYK2;C9JJ64 Q9NTJ3 39 56 SMC4 Structural maintenance of chromosomes protein 4 yes no 2 1.639E-96 245.5 5 2 0.58002 0.77263 10.442 5 Median 0.61958 0.82757 3.4759 3 0 Plateau 0.40724 0.66259 1.2504 2 0 Median 191280000 127250000 64032000 48024000 24107000 23918000 143250000 103140000 40114000 11727 1760 12043 42145;42146;42147;42148;42149;42150;42151 63242;63243;63244;63245;63246;63247;63248;63249;63250;63251;63252;63253;63254;63255 63244 14 TESVQYDHPNHTVTVTTISDLDLSGAR ALEEADELDRLVTAKTESVQYDHPNHTVTV VTVTTISDLDLSGARLLGLTPPEGGAGDRS K T E A R L 1 1 1 3 0 1 1 1 2 1 2 0 0 0 1 3 5 0 1 3 0 0 27 0 2955.421 B4DGP7;V9GYY5;B3KQ09;A0A024R1M6;Q9UGY1 B4DGP7 93 119 MGC3731;NOL12 Nucleolar protein 12 yes no 4 7.7654E-07 58.998 3 2 0.93816 1.2522 18.911 5 Median 0.97987 1.3175 7.3881 3 0 Median 0.62708 0.96544 7.0388 2 0 Median 97278000 53426000 43852000 55757000 25069000 30687000 41522000 28357000 13164000 11728 60 12044 42152;42153;42154;42155;42156 63256;63257;63258;63259;63260;63261;63262 63261 7 TETNVYFK VAGPLGVTHFLILSKTETNVYFKLMRLPGG HFLILSKTETNVYFKLMRLPGGPTLTFQVK K T E F K L 0 0 1 0 0 0 1 0 0 0 0 1 0 1 0 0 2 0 1 1 0 0 8 0 1000.4866 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;C9J3W3;C9JHF7 A0A0A6YYI3 91 98 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 0.0015975 113.7 4 1 0.71709 0.92462 13.749 5 Median 0.74554 0.95563 4.735 4 0 Median 0.48206 0.71606 NaN 1 0 Median 291850000 166720000 125130000 280800000 159360000 121450000 11047000 7366600 3680800 11729 408 12045 42157;42158;42159;42160;42161 63263;63264;63265;63266;63267;63268;63269;63270;63271;63272 63268 10 TETSETEITTTEIIK DDMAAKAPPGGGTTRTETSETEITTTEIIK TETSETEITTTEIIKRRDVGPYGIRSEYCI R T E I K R 0 0 0 0 0 0 4 0 0 3 0 1 0 0 0 1 6 0 0 0 0 0 15 0 1694.8462 E7ETD6;Q12830;F5GXF5 E7ETD6 1796 1810 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.0014732 114.76 2 0.46785 0.59386 NaN 1 Median 0.46785 0.59386 NaN 1 0 Median NaN NaN NaN 0 0 Median 8320200 4905900 3414300 8320200 4905900 3414300 0 0 0 11730 1015 12046 42162;42163 63273;63274;63275 63273 3 TETVTSFR HDVGAYMLMYKGANRTETVTSFRKRESKVP MYKGANRTETVTSFRKRESKVPADLLKRAF R T E F R K 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 1 3 0 0 1 0 0 8 0 939.46616 P78527 P78527 3865 3872 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.030425 81.296 1 0.41119 0.56471 NaN 1 Median 0.41119 0.56471 NaN 1 0 Median NaN NaN NaN 0 0 Median 6627200 4834200 1793000 6627200 4834200 1793000 0 0 0 11731 1427 12047 42164 63276 63276 1 TETYPQGQPVK DDDFTFGQSALKKIKTETYPQGQPVKFPAN KKIKTETYPQGQPVKFPANANSTKEEVEMN K T E V K F 0 0 0 0 0 2 1 1 0 0 0 1 0 0 2 0 2 0 1 1 0 0 11 0 1246.6194 B3KPM8;Q8N5C6 B3KPM8 186 196 SRBD1 S1 RNA-binding domain-containing protein 1 yes no 2 0.016472 42.864 1 0.85245 1.1251 NaN 1 Median NaN NaN NaN 0 0 Median 0.85245 1.1251 NaN 1 0 Median 1974500 1020400 954110 0 0 0 1974500 1020400 954110 11732 765 12048 42165 63277 63277 1 TEVNGFDPLFNAITGLNGSGK IKSIILEGFKSYAQRTEVNGFDPLFNAITG DPLFNAITGLNGSGKSNILDSICFLLGISN R T E G K S 1 0 3 1 0 0 1 4 0 1 2 1 0 2 1 1 2 0 0 1 0 0 21 0 2150.0644 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q05D74;Q6P712 A0A024R158 18 38 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 1.5789E-79 229.02 4 0.71319 0.86827 9.181 3 Median 0.71319 0.86827 9.181 3 0 Median NaN NaN NaN 0 0 Median 105710000 72067000 33639000 105710000 72067000 33639000 0 0 0 11733 50 12049 42166;42167;42168;42169 63278;63279;63280;63281;63282;63283;63284 63280 7 TEVSLTLTNK SSGNLNDPNKEALAKTEVSLTLTNKFDVPG EALAKTEVSLTLTNKFDVPGDENAEMDART K T E N K F 0 0 1 0 0 0 1 0 0 0 2 1 0 0 0 1 3 0 0 1 0 0 10 0 1104.6027 A4QPB0;A0A024RC65;P46940;H0YLE8;B4E2M0 A4QPB0 1359 1368 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.049241 44.863 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11734 287 12050 42170 63285 63285 1 TEVWGLVLLSEEK DLDTQHCFKTMVGHRTEVWGLVLLSEEKRL HRTEVWGLVLLSEEKRLITGASDSELRVWD R T E E K R 0 0 0 0 0 0 3 1 0 0 3 1 0 0 0 1 1 1 0 2 0 0 13 0 1501.8028 Q5TDG3;Q9UNX4 Q5TDG3 192 204 WDR3 WD repeat-containing protein 3 yes no 2 0.00013163 76.533 1 0.67963 1.0022 NaN 1 Median NaN NaN NaN 0 0 Median 0.67963 1.0022 NaN 1 0 Median 7215000 4251000 2964000 0 0 0 7215000 4251000 2964000 11735 1576 12051 42171 63286 63286 1 TEYDAVAEK KKKQKLLEENVSAFKTEYDAVAEKAGKVEA NVSAFKTEYDAVAEKAGKVEAEVKRLHNTI K T E E K A 2 0 0 1 0 0 2 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 9 0 1024.4713 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 868 876 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.0035034 76.827 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5443000 5443000 0 5443000 5443000 0 0 0 0 11736 1760 12052 42172 63287 63287 1 TEYISTEFNR KRSQQHAKVVPWMRKTEYISTEFNRYGISN PWMRKTEYISTEFNRYGISNEKPEVKIGVS K T E N R Y 0 1 1 0 0 0 2 0 0 1 0 0 0 1 0 1 2 0 1 0 0 0 10 0 1258.583 A0A024R0H6;Q8N7H5;B4DGJ5 A0A024R0H6 134 143 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 0.0081161 65.305 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4429700 0 4429700 4429700 0 4429700 0 0 0 11737 36 12053 42173 63288 63288 1 TFAAQSLVQLLSK LQHICAKVVDKSEYRTFAAQSLVQLLSKLP YRTFAAQSLVQLLSKLPCGEYAMFIAWLYK R T F S K L 2 0 0 0 0 2 0 0 0 0 3 1 0 1 0 2 1 0 0 1 0 0 13 0 1404.7977 P42695;G3V1A9;E9PKK4 P42695 372 384 NCAPD3 Condensin-2 complex subunit D3 yes no 2 3.3586E-07 128.88 3 1 0.67471 0.88697 75.672 3 Median 1.1488 1.4823 72.628 2 0 Median 0.39005 0.5661 NaN 1 0 Median 15658000 8967200 6690800 10388000 5102800 5285000 5270100 3864300 1405700 11738 1338 12054 42174;42175;42176;42177 63289;63290;63291;63292;63293 63291 5 TFADCIQALLEQHQVLEVGGNTAR RRFSALEKAGGGRTRTFADCIQALLEQHQV LEQHQVLEVGGNTARLVAMGSAWPWLLHSV R T F A R L 3 1 1 1 1 3 2 2 1 1 3 0 0 1 0 0 2 0 0 2 0 0 24 0 2669.3231 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 1779 1802 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 3 8.0871E-21 119.38 3 0.60863 0.81174 2.9659 3 Median 0.60863 0.81174 2.9659 3 0 Median NaN NaN NaN 0 0 Median 17949000 11442000 6507200 17949000 11442000 6507200 0 0 0 11739 1457 12055 42178;42179;42180 63294;63295;63296 63296 3 TFANSSYLAQHIR SHTETKPHKCPHCSKTFANSSYLAQHIRIH SKTFANSSYLAQHIRIHSGAKPYSCNFCEK K T F I R I 2 1 1 0 0 1 0 0 1 1 1 0 0 1 0 2 1 0 1 0 0 0 13 0 1506.7579 D3DUR9;Q8TF68;B4DQU6;F5H8L7;E9PHB3 D3DUR9 264 276 ZNF384 Zinc finger protein 384 yes no 3 0.0048673 36.938 1 0.77427 0.98431 NaN 1 Median NaN NaN NaN 0 0 Median 0.77427 0.98431 NaN 1 0 Median 4043000 2318900 1724100 0 0 0 4043000 2318900 1724100 11740 983 12056 42181 63297 63297 1 TFCQLILDPIFK FSKSATSPEGKKLPRTFCQLILDPIFKVFD LPRTFCQLILDPIFKVFDAIMNFKKEETAK R T F F K V 0 0 0 1 1 1 0 0 0 2 2 1 0 2 1 0 1 0 0 0 0 0 12 0 1493.7952 P13639;Q6PK56;B4DRE8;B4DMC6 P13639 288 299 EEF2 Elongation factor 2 yes no 2 1.2299E-09 110.39 6 0.55581 0.69836 9.8437 4 Median 0.55581 0.69836 9.8437 4 0 Median NaN NaN NaN 0 0 Median 70116000 42178000 27938000 70116000 42178000 27938000 0 0 0 11741 1264 12057 42182;42183;42184;42185;42186;42187 63298;63299;63300;63301;63302;63303;63304;63305;63306;63307;63308 63307 11 TFDETVSTYVPLAQQVEDFHK CTIVKPFNLSQGKKRTFDETVSTYVPLAQQ STYVPLAQQVEDFHKRTPNRYHLRSKKDDI R T F H K R 1 0 0 2 0 2 2 0 1 0 1 1 0 2 1 1 3 0 1 3 0 0 21 0 2453.1751 Q643R0;Q9ULW0;B3KM90 Q643R0 316 336 HCTP4;TPX2 Targeting protein for Xklp2 yes no 3 5.5721E-26 142.23 3 2 0.7452 1.0652 6.0324 5 Median 0.80848 1.0163 4.8182 3 0 Median 0.70435 1.1118 0.83174 2 0 Median 214830000 124060000 90771000 144870000 83051000 61819000 69962000 41010000 28952000 11742 1581 12058 42188;42189;42190;42191;42192 63309;63310;63311;63312;63313;63314;63315;63316 63309 8 TFDPYIIIR LDLIEGSMTVCTTKKTFDPYIIIRARDLIK VCTTKKTFDPYIIIRARDLIKLLARSVSFE K T F I R A 0 1 0 1 0 0 0 0 0 3 0 0 0 1 1 0 1 0 1 0 0 0 9 0 1136.623 Q13601;B4DMS5 Q13601 107 115 KRR1 KRR1 small subunit processome component homolog yes no 2 0.0089237 85.212 3 2 0.79318 1.145 10.341 5 Median 0.91829 1.2231 10.11 3 0 Plateau 0.7279 1.0492 12.355 2 0 Median 81193000 44013000 37180000 56389000 29520000 26868000 24804000 14492000 10312000 11743 1473 12059 42193;42194;42195;42196;42197 63317;63318;63319;63320;63321;63322;63323 63319 7 TFEEILPEIIISK IAIEGPDLVNGSHQKTFEEILPEIIISKEL QKTFEEILPEIIISKELSLLSGEVCNRTEG K T F S K E 0 0 0 0 0 0 3 0 0 4 1 1 0 1 1 1 1 0 0 0 0 0 13 0 1530.8545 A0PJ70;A8K9K0;Q8TF76 A0PJ70 528 540 GSG2 Serine/threonine-protein kinase haspin yes no 2 0.00090221 99.539 2 1.1025 1.3801 NaN 1 Median 1.1025 1.3801 NaN 1 0 Median NaN NaN NaN 0 0 Median 2236500 925240 1311300 2236500 925240 1311300 0 0 0 11744 533 12060 42198;42199 63324;63325 63325 2 TFEGHDASVLK GTIKLWALQDFSCLKTFEGHDASVLKVAFV SCLKTFEGHDASVLKVAFVSRGTQLLSSGS K T F L K V 1 0 0 1 0 0 1 1 1 0 1 1 0 1 0 1 1 0 0 1 0 0 11 0 1202.5932 Q12788;J3KNP2;A0JLS5 Q12788 558 568 TBL3 Transducin beta-like protein 3 yes no 2 1.3321E-06 117.02 3 0.78186 0.99291 4.3719 3 Median 0.78186 0.99291 4.3719 3 0 Median NaN NaN NaN 0 0 Median 25949000 14671000 11277000 25949000 14671000 11277000 0 0 0 11745 1456 12061 42200;42201;42202 63326;63327;63328;63329;63330;63331;63332;63333 63333 8 TFEVPEENTAETITR LGAPNCLSMGSRCLKTFEVPEENTAETITR TFEVPEENTAETITRVLYEVFIEWGISAKV K T F T R V 1 1 1 0 0 0 4 0 0 1 0 0 0 1 1 0 4 0 0 1 0 0 15 0 1735.8265 A0A024RBU4;O96006;C9JXP4 A0A024RBU4 235 249 hCG_1981838;ZBED1 Zinc finger BED domain-containing protein 1 yes no 2 3.6755E-07 87.363 1 0.37432 0.50925 NaN 1 Median 0.37432 0.50925 NaN 1 0 Median NaN NaN NaN 0 0 Median 5267700 3624200 1643400 5267700 3624200 1643400 0 0 0 11746 282 12062 42203 63334 63334 1 TFEVTPIR DSKEEKYVAKELAVRTFEVTPIRAKDLEFG AKELAVRTFEVTPIRAKDLEFGGVPGVFLI R T F I R A 0 1 0 0 0 0 1 0 0 1 0 0 0 1 1 0 2 0 0 1 0 0 8 0 961.52328 A0A024R3R5 A0A024R3R5 196 203 LBR no no 2 0.051503 49.097 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3051000 3051000 0 0 0 0 3051000 3051000 0 11747 106 12063 42204 63335 63335 1 TFFSFPAVVAPFK VFEHTFHVREGDEQRTFFSFPAVVAPFKCS QRTFFSFPAVVAPFKCSVLPLSQNQEFMPF R T F F K C 2 0 0 0 0 0 0 0 0 0 0 1 0 4 2 1 1 0 0 2 0 0 13 0 1456.7755 A0A090N8G0;P41250 A0A090N8G0 549 561 GARS Glycine--tRNA ligase yes no 2 0.00013291 99.568 5 0.75398 0.97098 15.55 3 Median 0.75398 0.97098 15.55 3 0 Median NaN NaN NaN 0 0 Median 13675000 8025100 5649500 13675000 8025100 5649500 0 0 0 11748 382 12064 42205;42206;42207;42208;42209 63336;63337;63338;63339;63340;63341;63342 63342 7 TFGTAIVINPEK GGQQALLQHWSEYIKTFGTAIVINPEKDKD YIKTFGTAIVINPEKDKDMVQDLLDFKDKV K T F E K D 1 0 1 0 0 0 1 1 0 2 0 1 0 1 1 0 2 0 0 1 0 0 12 0 1288.7027 Q13619;A0A0A0MR50;B2RBV7;B4DKT2 Q13619 346 357 CUL4A Cullin-4A yes no 2 1.3469E-05 128.88 3 1 0.62438 0.78754 9.8712 4 Median 0.67232 0.84685 9.5845 3 0 Median 0.49129 0.72393 NaN 1 0 Median 41539000 25601000 15938000 32845000 19917000 12927000 8694200 5683800 3010400 11749 1474 12065 42210;42211;42212;42213 63343;63344;63345;63346;63347;63348;63349 63345 7 TFHHVYSGK LKGRGVTFLFPIQAKTFHHVYSGKDLIAQA FPIQAKTFHHVYSGKDLIAQARTGTGKTFS K T F G K D 0 0 0 0 0 0 0 1 2 0 0 1 0 1 0 1 1 0 1 1 0 0 9 0 1074.5247 Q9NR30 Q9NR30 216 224 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 0.0053057 60.019 4 0.69546 0.88231 5.0373 4 Median 0.69546 0.88231 5.0373 4 0 Median NaN NaN NaN 0 0 Median 115110000 68929000 46186000 115110000 68929000 46186000 0 0 0 11750 1756 12066 42214;42215;42216;42217 63350;63351;63352;63353;63354;63355 63351 6 TFHIFYYLLSGAGEHLK LLEKSRAIRQAKEERTFHIFYYLLSGAGEH HIFYYLLSGAGEHLKTDLLLEPYNKYRFLS R T F L K T 1 0 0 0 0 0 1 2 2 1 3 1 0 2 0 1 1 0 2 0 0 0 17 0 1995.0254 A0A024R1N1;P35579;Q86XU5;B4E3S1 A0A024R1N1 273 289 MYH9 Myosin-9 yes no 3 9.4468E-05 53.861 5 1.0632 1.2848 10.54 5 Median 1.0632 1.2848 10.54 5 0 Median NaN NaN NaN 0 0 Median 46252000 21517000 24735000 46252000 21517000 24735000 0 0 0 11751 61 12067 42218;42219;42220;42221;42222 63356;63357;63358;63359;63360;63361;63362 63362 7 TFLHTVQR PSSPCPASKVVRPLRTFLHTVQRNQMLMTP KVVRPLRTFLHTVQRNQMLMTPTSAPRSVM R T F Q R N 0 1 0 0 0 1 0 0 1 0 1 0 0 1 0 0 2 0 0 1 0 0 8 0 1000.5454 Q9NQS7;B3KPD3 Q9NQS7 494 501 INCENP Inner centromere protein yes no 2;3 2.7375E-05 138.26 5 4 1.0833 1.2647 12.102 9 Linear 0.91813 1.2713 16.623 5 0 Median 0.76743 1.2484 3.6707 4 0 Median 680470000 355530000 324940000 478620000 241450000 237170000 201850000 114080000 87766000 11752 1752 12068 42223;42224;42225;42226;42227;42228;42229;42230;42231 63363;63364;63365;63366;63367;63368;63369;63370;63371;63372;63373;63374;63375;63376;63377;63378;63379 63375 17 TFLSVVLPR KNTETQPTSPQLGTKTFLSVVLPRLETLLQ PQLGTKTFLSVVLPRLETLLQPRKRSRSTC K T F P R L 0 1 0 0 0 0 0 0 0 0 2 0 0 1 1 1 1 0 0 2 0 0 9 0 1030.6175 Q86X06;A0A024R4V5;B7Z926;Q9Y4Q3;B4DZC2 Q86X06 913 921 BRD1;DKFZp434B094 yes no 2 0.025684 51.854 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1320500 1320500 0 1320500 1320500 0 0 0 0 11753 128 12069 42232 63380 63380 1 TFLVGER VRRILGLLDAYLKTRTFLVGERVTLADITV LDAYLKTRTFLVGERVTLADITVVCTLLWL R T F E R V 0 1 0 0 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 1 0 0 7 0 820.4443 Q53YD7;P26641;B4DUP0 Q53YD7 150 156 EEF1G Elongation factor 1-gamma yes no 2 0.027094 94.006 2 0.25717 0.353 NaN 1 Median 0.25717 0.353 NaN 1 0 Median NaN NaN NaN 0 0 Median 20809000 18112000 2696800 20809000 18112000 2696800 0 0 0 11754 1299 12070 42233;42234 63381;63382 63382 2 TFNEPESVIAR SALVWEVRYIEHNARTFNEPESVIARSAKK HNARTFNEPESVIARSAKKITDQLLKFIKN R T F A R S 1 1 1 0 0 0 2 0 0 1 0 0 0 1 1 1 1 0 0 1 0 0 11 0 1261.6303 Q9NSI6;Q5R2U7;H7C409 Q9NSI6 1238 1248 BRWD1;WDR9 Bromodomain and WD repeat-containing protein 1 yes no 2 0.017097 42.718 2 1.004 1.3104 1.1905 2 Median NaN NaN NaN 0 0 Median 1.004 1.3104 1.1905 2 0 Median 9631600 4751300 4880400 0 0 0 9631600 4751300 4880400 11755 1758 12071 42235;42236 63383;63384 63384 2 TFNEPGSPIVK SSLMWEVRYIEHNTRTFNEPGSPIVKSAKF HNTRTFNEPGSPIVKSAKFVTDLLLHFIKD R T F V K S 0 0 1 0 0 0 1 1 0 1 0 1 0 1 2 1 1 0 0 1 0 0 11 0 1187.6186 Q8WWQ0;Q9NWP3 Q8WWQ0 1237 1247 PHIP PH-interacting protein yes no 2 1.6511E-06 138.08 4 1 0.83913 1.0793 7.6512 5 Median 0.85304 1.0744 5.0898 4 0 Median 0.82246 1.2629 NaN 1 0 Median 144960000 76172000 68785000 117600000 61937000 55664000 27356000 14236000 13121000 11756 1668 12072 42237;42238;42239;42240;42241 63385;63386;63387;63388;63389;63390;63391;63392;63393 63391 9 TFNLPLLMLGGGGYTIR NLTVKGHAKCVEVVKTFNLPLLMLGGGGYT NLPLLMLGGGGYTIRNVARCWTYETAVALD K T F I R N 0 1 1 0 0 0 0 4 0 1 4 0 1 1 1 0 2 0 1 0 0 0 17 0 1821.9811 Q92769;B3KUJ5;Q59GB9 Q92769 291 307 HDAC2 Histone deacetylase 2;Histone deacetylase yes no 2 0.012017 41.54 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1470400 1470400 0 1470400 1470400 0 0 0 0 11757 1675 12073 42242 63394 63394 755 1 TFNTSTGGLLLPSDTK KLYRETNEPVKTKTRTFNTSTGGLLLPSDT FNTSTGGLLLPSDTKRSQIYGSRQIILEKE R T F T K R 0 0 1 1 0 0 0 2 0 0 3 1 0 1 1 2 4 0 0 0 0 0 16 0 1650.8465 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356 A0A024R1N4 302 317 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 9.0642E-34 188.4 7 2 0.59585 0.75198 17.522 6 Median 0.57986 0.73225 3.6718 4 0 Median 0.63614 1.0173 3.9818 2 0 Median 289860000 175500000 114360000 189990000 114140000 75853000 99868000 61361000 38507000 11758 62 12074 42243;42244;42245;42246;42247;42248;42249;42250;42251 63395;63396;63397;63398;63399;63400;63401;63402;63403;63404;63405;63406;63407;63408;63409;63410;63411;63412;63413;63414;63415;63416;63417 63396 23 TFNTSTGGLLLPSDTKR KLYRETNEPVKTKTRTFNTSTGGLLLPSDT NTSTGGLLLPSDTKRSQIYGSRQIILEKEE R T F K R S 0 1 1 1 0 0 0 2 0 0 3 1 0 1 1 2 4 0 0 0 0 0 17 1 1806.9476 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32 A0A024R1N4 302 318 XRCC6 X-ray repair cross-complementing protein 6 yes no 2;3 0.00084466 72.489 4 1 0.44631 0.75344 24.105 4 Linear 0.55941 0.72624 27.7 3 0 Plateau 0.41448 0.6881 NaN 1 0 Median 79198000 53653000 25544000 56574000 37517000 19057000 22623000 16136000 6487500 11759 62 12075 42252;42253;42254;42255;42256 63418;63419;63420;63421;63422;63423;63424;63425 63419 8 TFPSAEDVVAR VQNGSQLFIKELRSRTFPSAEDVVARVPGS LRSRTFPSAEDVVARVPGSQLTLGYMEEHG R T F A R V 2 1 0 1 0 0 1 0 0 0 0 0 0 1 1 1 1 0 0 2 0 0 11 0 1190.5932 O75151 O75151 97 107 PHF2 Lysine-specific demethylase PHF2 yes yes 2 0.016987 42.743 1 0.853 1.1873 NaN 1 Median NaN NaN NaN 0 0 Median 0.853 1.1873 NaN 1 0 Median 9019200 5051200 3967900 0 0 0 9019200 5051200 3967900 11760 1196 12076 42257 63426 63426 1 TFPVDILFSK AAFFGNVPIFHIPGRTFPVDILFSKTPQED HIPGRTFPVDILFSKTPQEDYVEAAVKQSL R T F S K T 0 0 0 1 0 0 0 0 0 1 1 1 0 2 1 1 1 0 0 1 0 0 10 0 1165.6383 B4DM30;B4DET0;A8K6G9;Q92620;J3KTG2 B4DM30 381 390 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes no 2 0.043625 66.962 1 0.70907 0.91407 NaN 1 Median 0.70907 0.91407 NaN 1 0 Median NaN NaN NaN 0 0 Median 539730 327490 212250 539730 327490 212250 0 0 0 11761 624 12077 42258 63427 63427 1 TFQCELCSYTCPR KPPKPTKIKKKGVKKTFQCELCSYTCPRRS KKTFQCELCSYTCPRRSNLDRHMKSHTDER K T F P R R 0 1 0 0 3 1 1 0 0 0 1 0 0 1 1 1 2 0 1 0 0 0 13 0 1720.7007 P49711 P49711 265 277 CTCF Transcriptional repressor CTCF yes yes 2 0.020981 48.44 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11762 1354 12078 42259 63428 63428 1 TFSDTTHGSVPSDPLGR GTESGLKGKVEKTTRTFSDTTHGSVPSDPL SDTTHGSVPSDPLGRADKASDTSSETVFGK R T F G R A 0 1 0 2 0 0 0 2 1 0 1 0 0 1 2 3 3 0 0 1 0 0 17 0 1772.8329 A0A024RAC0;Q86V48 A0A024RAC0 510 526 LUZP1 Leucine zipper protein 1 yes no 3 0.00035464 44.196 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9284800 9284800 0 9284800 9284800 0 0 0 0 11763 238 12079 42260 63429 63429 1 TFSFAIPLIEK SGKDLIAQARTGTGKTFSFAIPLIEKLHGE GTGKTFSFAIPLIEKLHGELQDRKRGRAPQ K T F E K L 1 0 0 0 0 0 1 0 0 2 1 1 0 2 1 1 1 0 0 0 0 0 11 0 1264.7067 Q9NR30 Q9NR30 237 247 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.00017469 98.044 6 2 0.70306 0.91552 3.5831 6 Median 0.71845 0.91544 4.4402 4 0 Median 0.5723 0.91552 2.2461 2 0 Median 310030000 183990000 126040000 209580000 120530000 89048000 100450000 63463000 36991000 11764 1756 12080 42261;42262;42263;42264;42265;42266;42267;42268 63430;63431;63432;63433;63434;63435;63436;63437;63438;63439;63440;63441;63442;63443;63444;63445;63446;63447 63442 17 TFSFAIPLIER EGKDLIAQARTGTGKTFSFAIPLIERLQRN GTGKTFSFAIPLIERLQRNQETIKKSRSPK K T F E R L 1 1 0 0 0 0 1 0 0 2 1 0 0 2 1 1 1 0 0 0 0 0 11 0 1292.7129 Q9BQ39;B4DED6;B4DW97;A0A087WVC1;K0J110;Q53FI9 Q9BQ39 188 198 DDX50;mcdrh ATP-dependent RNA helicase DDX50 yes no 2 0.0013786 81.338 4 0.70771 0.98642 9.9667 4 Median 0.70771 0.98642 9.9667 4 0 Median NaN NaN NaN 0 0 Median 15141000 8510100 6630900 15141000 8510100 6630900 0 0 0 11765 1707 12081 42269;42270;42271;42272 63448;63449;63450;63451;63452;63453;63454;63455 63451 8 TFSLTEVR KKESGENPPPKLRRRTFSLTEVRGQVSESE PPKLRRRTFSLTEVRGQVSESEDSITKQIE R T F V R G 0 1 0 0 0 0 1 0 0 0 1 0 0 1 0 1 2 0 0 1 0 0 8 0 951.50255 Q59HG1;O95239;B3KNC0 Q59HG1 802 809 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 0.0060488 86.095 3 2 0.7782 1.0391 7.7713 5 Median 0.80268 1.0923 3.6172 3 0 Median 0.61641 0.94763 2.3713 2 0 Median 108280000 61874000 46403000 67582000 36504000 31078000 40695000 25370000 15325000 11766 1216 12082 42273;42274;42275;42276;42277 63456;63457;63458;63459;63460;63461;63462 63457 7 TFTDCFNCLPIAAIVDEK FYDECKRRYNIKLWKTFTDCFNCLPIAAIV DCFNCLPIAAIVDEKIFCCHGGLSPDLQSM K T F E K I 2 0 1 2 2 0 1 0 0 2 1 1 0 2 1 0 2 0 0 1 0 0 18 0 2112.986 A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;H0Y3Y6;C4TNW5;P62136;A0A140VJS9;B3KXM2;V9HW04;P62140;B4DJ75;B7ZB67;E7ETD8;B4E163 V9HW04 151 168 PPP1CC;PPP1CB;PPP1CA;HEL-S-80p Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 2 9.3515E-39 159.41 7 0.97343 1.2415 5.6614 3 Median 0.97343 1.2415 5.6614 3 0 Median NaN NaN NaN 0 0 Median 225200000 94626000 130580000 225200000 94626000 130580000 0 0 0 11767 1396;1397;279 12083 42278;42279;42280;42281;42282;42283;42284 63463;63464;63465;63466;63467;63468;63469;63470;63471;63472;63473;63474;63475;63476;63477;63478;63479 63479 17 TFVAQMTVFDK ELPARRKRNREDGEKTFVAQMTVFDKNRRL DGEKTFVAQMTVFDKNRRLQLLDGEYEVAM K T F D K N 1 0 0 1 0 1 0 0 0 0 0 1 1 2 0 0 2 0 0 2 0 0 11 0 1285.6377 J3QQW9;Q15022;A8K1U9 J3QQW9 271 281 SUZ12 Polycomb protein SUZ12 yes no 2 0.0039474 52.725 2 0.65508 0.98202 8.3244 2 Median NaN NaN NaN 0 0 Median 0.65508 0.98202 8.3244 2 0 Median 25601000 12939000 12662000 0 0 0 25601000 12939000 12662000 11768 1143 12084 42285;42286 63480;63481;63482 63480 410 3 TGAAPIIDVVR TLVSEQTRVNAAKNKTGAAPIIDVVRS___ AKNKTGAAPIIDVVRS______________ K T G V R S 2 1 0 1 0 0 0 1 0 2 0 0 0 0 1 0 1 0 0 2 0 0 11 0 1110.6397 Q9BQQ5;E9PLL6;Q6NZ52;P46776;E9PJD9;E9PLX7 Q9BQQ5 95 105 L27a;RPL27A 60S ribosomal protein L27a yes no 2 3.5497E-08 135.43 6 2 0.77312 1.0601 51.25 6 Median 0.785 1.0794 5.8123 4 0 Median 0.24567 0.4098 1.898 2 0 Median 4328500000 2651000000 1677500000 3384900000 1897800000 1487100000 943590000 753160000 190440000 11769 1040 12085 42287;42288;42289;42290;42291;42292;42293;42294 63483;63484;63485;63486;63487;63488;63489;63490;63491;63492;63493;63494;63495;63496;63497;63498;63499;63500;63501 63490 19 TGAEGAVLDEAK KLYLVDLAGSEKVSKTGAEGAVLDEAKNIN VSKTGAEGAVLDEAKNINKSLSALGNVISA K T G A K N 3 0 0 1 0 0 2 2 0 0 1 1 0 0 0 0 1 0 0 1 0 0 12 0 1159.5721 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;M1V490;M1VPF9;M1V481;M1VPF7;M1VRN0;M1VKI9;M1VE89;Q6P164;Q2TA90;Q66K46;A0A0G2JMZ6;A1L179;B2RCP3;O60282;Q12840;J3KNA1;B7Z2M7;B0I1S7;A5D6Y6;Q6PJC4;Q6PKD1;Q57YV6 V9HW29 241 252 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5B-RET(NM_020630)_K22;R12;KIF5B-RET(NM_020975)_K22;R12;KIF5B-ALK_K17;A20;KIF5B-RET(NM_020630)_K15;R12;KIF5B-RET(NM_020975)_K15;R12;KIF5B-RET(NM_020630)_K16;R12;KIF5B-RET(NM_020975)_K16;R12;KIF5C;KIF5A Kinesin-like protein;Kinesin-1 heavy chain;Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A yes no 2 0.0075278 46.796 1 0.93505 1.1802 NaN 1 Median 0.93505 1.1802 NaN 1 0 Median NaN NaN NaN 0 0 Median 11364000 2805200 8558600 11364000 2805200 8558600 0 0 0 11770 978 12086 42295 63502 63502 1 TGAESISLLELCR RTQQMLHGLQRALAKTGAESISLLELCRNT AKTGAESISLLELCRNTNRKQAAAKFYSFL K T G C R N 1 1 0 0 1 0 2 1 0 1 3 0 0 0 0 2 1 0 0 0 0 0 13 0 1447.7341 A0A024R9J0;O60216;B3KUT8;E5RG18;E5RI01;E5RFZ5 A0A024R9J0 574 586 RAD21 Double-strand-break repair protein rad21 homolog yes no 2 9.0439E-16 162.26 3 0.49227 0.68356 2.3115 2 Median 0.49227 0.68356 2.3115 2 0 Median NaN NaN NaN 0 0 Median 15543000 9969200 5574000 15543000 9969200 5574000 0 0 0 11771 223 12087 42296;42297;42298 63503;63504;63505 63503 3 TGDFQLHTNVNDGTEFGGSIYQK AKSKLTRNNFAVGYRTGDFQLHTNVNDGTE NVNDGTEFGGSIYQKVCEDLDTSVNLAWTS R T G Q K V 0 0 2 2 0 2 1 4 1 1 1 1 0 2 0 1 3 0 1 1 0 0 23 0 2527.1615 A0A024QZT0;P45880;A0A0A0MR02;A0A024QZN9;B4DKM5 A0A024QZT0 186 208 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 3 4.8215E-86 224.08 6 2 0.62188 0.79592 80.32 7 Median 0.58846 0.78107 2.7991 5 0 Median 2.5588 4.0797 2.3982 2 0 Median 991260000 598720000 392540000 851710000 559450000 292260000 139550000 39276000 100270000 11772 20 12088 42299;42300;42301;42302;42303;42304;42305;42306 63506;63507;63508;63509;63510;63511;63512;63513;63514;63515;63516;63517;63518;63519;63520;63521;63522 63509 17 TGDPQETLRR RPSLSLGTITDEEMKTGDPQETLRRASMQP DEEMKTGDPQETLRRASMQPIQIAEGTGIT K T G R R A 0 2 0 1 0 1 1 1 0 0 1 0 0 0 1 0 2 0 0 0 0 0 10 1 1171.5945 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q9UNL7;Q4LE64;Q14980 Q4LE64 1944 1953 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 0.01826 29.071 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9862600 9862600 0 0 0 0 9862600 9862600 0 11773 148;1499 12089 42307 63523 63523 1 TGEEVGFVVDAK SKCLATGPGIASTVKTGEEVGFVVDAKTAG TVKTGEEVGFVVDAKTAGKGKVTCTVLTPD K T G A K T 1 0 0 1 0 0 2 2 0 0 0 1 0 1 0 0 1 0 0 3 0 0 12 0 1249.619 O75369;A0A024R321;Q68CT4;E7EN95 O75369 1630 1641 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.00024669 78.653 4 0.75835 0.96664 23.059 4 Median 0.75835 0.96664 23.059 4 0 Median NaN NaN NaN 0 0 Median 22801000 13823000 8978000 22801000 13823000 8978000 0 0 0 11774 1199 12090 42308;42309;42310;42311 63524;63525;63526;63527;63528 63528 5 TGEGFLLVFSVTDR AGQEEFGAMREQYMRTGEGFLLVFSVTDRG RTGEGFLLVFSVTDRGSFEEIYKFQRQILR R T G D R G 0 1 0 1 0 0 1 2 0 0 2 0 0 2 0 1 2 0 0 2 0 0 14 0 1539.7933 E9PK85;P62070;E9PQ87 E9PK85 66 79 RRAS2 Ras-related protein R-Ras2 yes no 2 0.04176 59.367 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11775 1038 12091 42312 63529 63529 1 TGENVEDAFLEAAK FAEENGLLFLEASAKTGENVEDAFLEAAKK KTGENVEDAFLEAAKKIYQNIQDGSLDLNA K T G A K K 3 0 1 1 0 0 3 1 0 0 1 1 0 1 0 0 1 0 0 1 0 0 14 0 1492.7046 A0A024R845;P61106;X6RFL8 A0A024R845 157 170 RAB14 Ras-related protein Rab-14 yes no 2 0.0017994 87.641 3 0.38017 0.48137 NaN 1 Median 0.38017 0.48137 NaN 1 0 Median NaN NaN NaN 0 0 Median 10573000 9732000 841320 10573000 9732000 841320 0 0 0 11776 192 12092 42313;42314;42315 63530;63531;63532 63531 3 TGEQDGLIGTALNCVLQVPK VLLNLTNDNEWGSTKTGEQDGLIGTALNCV GLIGTALNCVLQVPKYLPQEQRFDIRVLLF K T G P K Y 1 0 1 1 1 2 1 3 0 1 3 1 0 0 1 0 2 0 0 2 0 0 20 0 2112.0885 Q8WVX6;B2RTX8;Q7Z5K2 Q8WVX6 218 237 WAPAL Wings apart-like protein homolog yes no 2 5.6981E-05 91.712 1 0.45048 0.55688 NaN 1 Median 0.45048 0.55688 NaN 1 0 Median NaN NaN NaN 0 0 Median 899790 465550 434240 899790 465550 434240 0 0 0 11777 746 12093 42316 63533 63533 1 TGEYPVPLIR FAREEIIPVAAEYDKTGEYPVPLIRRAWEL AEYDKTGEYPVPLIRRAWELGLMNTHIPEN K T G I R R 0 1 0 0 0 0 1 1 0 1 1 0 0 0 2 0 1 0 1 1 0 0 10 0 1143.6288 A0A0S2Z366;Q5T4U5;Q5HYG7;P11310;B7Z9I1;B4DWX6;E9PJM9 A0A0S2Z366 70 79 ACADM;DKFZp686M24262 Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.016829 88.37 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3410500 3410500 0 3410500 3410500 0 0 0 0 11778 449 12094 42317;42318 63534;63535 63534 2 TGFFEFQAAK TDQNYEKMMFKEALKTGFFEFQAAKDKYRE KEALKTGFFEFQAAKDKYRELAVEGMHREL K T G A K D 2 0 0 0 0 1 1 1 0 0 0 1 0 3 0 0 1 0 0 0 0 0 10 0 1144.5553 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3;Q9NPU8;Q9HAM7;Q9NVC0 B4E266 777 786 LARS;DKFZp762P233 Leucine--tRNA ligase, cytoplasmic yes no 2 1.4488E-06 140.14 3 0.52551 0.65569 6.6424 3 Median 0.52551 0.65569 6.6424 3 0 Median NaN NaN NaN 0 0 Median 36736000 23765000 12971000 36736000 23765000 12971000 0 0 0 11779 732 12095 42319;42320;42321 63536;63537;63538;63539 63536 4 TGFINLDK CGSNPLKREIGDYIRTGFINLDKPSNPSSH EIGDYIRTGFINLDKPSNPSSHEVVAWIRR R T G D K P 0 0 1 1 0 0 0 1 0 1 1 1 0 1 0 0 1 0 0 0 0 0 8 0 906.48108 O60832;C9IYT0;U5UA77;H7C0M1;U5U7S7;H7C2Q9 O60832 89 96 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 0.016056 79.713 3 0.69549 0.88489 3.2144 3 Median 0.69549 0.88489 3.2144 3 0 Median NaN NaN NaN 0 0 Median 51035000 29619000 21416000 51035000 29619000 21416000 0 0 0 11780 1193 12096 42322;42323;42324 63540;63541;63542;63543;63544;63545 63545 6 TGFINLDKPSNPSSHEVVAWIR CGSNPLKREIGDYIRTGFINLDKPSNPSSH KPSNPSSHEVVAWIRRILRVEKTGHSGTLD R T G I R R 1 1 2 1 0 0 1 1 1 2 1 1 0 1 2 3 1 1 0 2 0 0 22 1 2466.2656 O60832;C9IYT0;U5UA77;H7C0M1;U5U7S7;H7C2Q9 O60832 89 110 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 4 4.4091E-12 74.698 2 0.54254 0.85758 14.129 2 Median NaN NaN NaN 0 0 Median 0.54254 0.85758 14.129 2 0 Median 27022000 16267000 10756000 0 0 0 27022000 16267000 10756000 11781 1193 12097 42325;42326 63546;63547;63548;63549 63548 4 TGGAYGEDLGADYNLSQVCDGK PKAKYHGNVMLLRAKTGGAYGEDLGADYNL DLGADYNLSQVCDGKVSVHVIEGDHRTLLE K T G G K V 2 0 1 3 1 1 1 5 0 0 2 1 0 0 0 1 1 0 2 1 0 0 22 0 2288.9856 A0A0U1RQF0;P49327 A0A0U1RQF0 2448 2469 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.03337 23.481 1 0.93454 1.2007 NaN 1 Median 0.93454 1.2007 NaN 1 0 Median NaN NaN NaN 0 0 Median 5032100 2942700 2089500 5032100 2942700 2089500 0 0 0 11782 486 12098 42327 63550 63550 1 TGGLEIDSDFGGFR IVAAVGLEPNVELAKTGGLEIDSDFGGFRV KTGGLEIDSDFGGFRVNAELQARSNIWVAG K T G F R V 0 1 0 2 0 0 1 4 0 1 1 0 0 2 0 1 1 0 0 0 0 0 14 0 1469.6787 O95831;A0A140VK04;E9PMA0 O95831 409 422 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 2 1.1101E-09 143.79 4 2 0.50454 0.67378 43.898 5 Median 0.46727 0.6355 7.4288 3 0 Median 0.98609 1.3887 8.517 2 0 Median 61845000 37148000 24697000 42673000 27266000 15408000 19172000 9882600 9289500 11783 1224 12099 42328;42329;42330;42331;42332;42333 63551;63552;63553;63554;63555;63556;63557 63554 7 TGGPAYGPSSDVSTASETESEK RTYGGSYGGRGRGRRTGGPAYGPSSDVSTA PSSDVSTASETESEKREEPNRAGPGDRDPP R T G E K R 2 0 0 1 0 0 3 3 0 0 0 1 0 0 2 5 3 0 1 1 0 0 22 0 2155.9393 P51116 P51116 438 459 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 2 0.0035192 70.451 2 1 0.73562 1.0123 18.594 2 Median 0.69264 0.88757 NaN 1 0 Median 0.78125 1.1545 NaN 1 0 Median 11567000 7784000 3782600 5095000 4022400 1072600 6471600 3761600 2710000 11784 1360 12100 42334;42335;42336 63558;63559;63560 63558 3 TGGQALSTLECVKPYLEGSGCIAGVTVPSTR RVIDQKTLHTLRVGRTGGQALSTLECVKPY EGSGCIAGVTVPSTREVMSLHEASRKELIP R T G T R E 2 1 0 0 2 1 2 5 0 1 3 1 0 0 2 3 4 0 1 3 0 0 31 1 3207.5904 A0A087X1U6;A0A075B730 A0A087X1U6 1878 1908 EPPK1 yes no 3 0.004211 47.304 3 1.0143 1.3213 1.8587 2 Median 1.0143 1.3213 1.8587 2 0 Median NaN NaN NaN 0 0 Median 6412600 3696600 2716000 6412600 3696600 2716000 0 0 0 11785 373 12101 42337;42338;42339 63561;63562;63563;63564 63562 4 TGGYLTESGYVNLQR AIDRLVNIYKNVVHKTGGYLTESGYVNLQR TGGYLTESGYVNLQRVQMIMLAVGEVEDSI K T G Q R V 0 1 1 0 0 1 1 3 0 0 2 0 0 0 0 1 2 0 2 1 0 0 15 0 1656.8107 B4E0B9;B4DZC3;B3KMC9;Q9H0D6 B4E0B9 298 312 XRN2 5-3 exoribonuclease 2 yes no 2 5.1121E-41 211.63 2 0.62659 0.86643 22.239 2 Median 0.62659 0.86643 22.239 2 0 Median NaN NaN NaN 0 0 Median 5419300 3178900 2240500 5419300 3178900 2240500 0 0 0 11786 754 12102 42340;42341 63565;63566;63567 63565 3 TGHYLTVK ALVTGYFMQVAHLERTGHYLTVKDNQVVQL QVAHLERTGHYLTVKDNQVVQLHPSTVLDH R T G V K D 0 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 2 0 1 1 0 0 8 0 917.49707 O43143;B4E0S6 O43143 707 714 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 0.0023923 115.49 2 2 0.73842 1.0198 21.545 4 Median 0.66632 0.83871 5.2645 2 0 Median 0.80421 1.2128 2.1252 2 0 Median 79827000 46450000 33377000 54896000 33040000 21856000 24931000 13410000 11521000 11787 1180 12103 42342;42343;42344;42345 63568;63569;63570;63571;63572;63573;63574 63569 7 TGIDLGTTGR ASSASSFLDSDELERTGIDLGTTGRLQLMA DELERTGIDLGTTGRLQLMARLAEGTGLQI R T G G R L 0 1 0 1 0 0 0 3 0 1 1 0 0 0 0 0 3 0 0 0 0 0 10 0 989.51417 B4DRA0;B4DLM0;B3KWX7;Q68DD9;B4E1M7;Q14498;H0Y4X3;B7Z4L7;Q6N037;E1P5S2;Q7Z3L0;Q6MZY7;G3XAC6;A0A0U1RQH7;A0A0U1RQW2;A0A087X122 B4DRA0 325 334 DKFZp781C0423;RBM39;DKFZp686A11192;RNPC2;DKFZp781I1140;DKFZp686C17209 RNA-binding protein 39 yes no 2 0.030395 100.25 2 0.42031 0.5655 1.3349 2 Median 0.42031 0.5655 1.3349 2 0 Median NaN NaN NaN 0 0 Median 22215000 15724000 6491200 22215000 15724000 6491200 0 0 0 11788 786 12104 42346;42347 63575;63576 63576 1 TGIEQGSDAGYLCESQK KGLYPAPLKIIDVVKTGIEQGSDAGYLCES IEQGSDAGYLCESQKFGELVMTKESKALMG K T G Q K F 1 0 0 1 1 2 2 3 0 1 1 1 0 0 0 2 1 0 1 0 0 0 17 0 1841.8102 B4DDZ5;E9KL44;P40939;B4DRH6 E9KL44 310 326 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase no no 2 3.3776E-60 220.37 4 0.51315 0.64513 12.437 3 Median 0.51315 0.64513 12.437 3 0 Median NaN NaN NaN 0 0 Median 27943000 19612000 8330400 27943000 19612000 8330400 0 0 0 11789 1020;797 12105 42348;42349;42350;42351 63577;63578;63579;63580;63581;63582;63583;63584;63585;63586 63581 10 TGIQVLLK YGLQKITLLREISLKTGIQVLLKEYSFDSR LREISLKTGIQVLLKEYSFDSRHKPAFTEE K T G L K E 0 0 0 0 0 1 0 1 0 1 2 1 0 0 0 0 1 0 0 1 0 0 8 0 870.55385 I3L2B0;K7EIG1;O75153 I3L2B0 925 932 CLUH Clustered mitochondria protein homolog yes no 2 0.048922 83.753 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 966670 966670 0 966670 966670 0 0 0 0 11790 1126 12106 42352 63587 63587 1 TGISDVFAK FVGNLNFNKSAPELKTGISDVFAKNDLAVV SAPELKTGISDVFAKNDLAVVDVRIGMTRK K T G A K N 1 0 0 1 0 0 0 1 0 1 0 1 0 1 0 1 1 0 0 1 0 0 9 0 936.49165 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99 B3KTP9 248 256 NCL Nucleolin yes no 2 0.0049705 79.906 3 1 0.93542 1.1612 6.8774 4 Median 0.95254 1.1837 6.0945 3 0 Median 0.70241 1.0919 NaN 1 0 Median 147920000 79170000 68752000 122660000 63860000 58797000 25265000 15311000 9954500 11791 119 12107 42353;42354;42355;42356 63588;63589;63590;63591;63592 63590 5 TGISHGHTVYVVHDGFEGLAK APAAGMNAAVRSAVRTGISHGHTVYVVHDG HTVYVVHDGFEGLAKGQVQEVGWHDVAGWL R T G A K G 1 0 0 1 0 0 1 4 3 1 1 1 0 1 0 1 2 0 1 3 0 0 21 0 2223.1073 P17858;Q7L2M7;B3KNQ7;Q9BSP4;Q7Z3R9;Q6MZK4;Q59GI2 P17858 424 444 PFKL;DKFZp686G1648;DKFZp686L2097 ATP-dependent 6-phosphofructokinase, liver type yes no 4 0.045394 13.188 1 0.53329 0.67534 NaN 1 Median 0.53329 0.67534 NaN 1 0 Median NaN NaN NaN 0 0 Median 12129000 7719300 4409300 12129000 7719300 4409300 0 0 0 11792 1279 12108 42357 63593 63593 1 TGLAVTVGQAK EDSSSSEESDSEEEKTGLAVTVGQAKSVGK EEEKTGLAVTVGQAKSVGKGLQVKAASVPV K T G A K S 2 0 0 0 0 1 0 2 0 0 1 1 0 0 0 0 2 0 0 2 0 0 11 0 1043.5975 E7ETY2;B4DRA2;B4DLB1;J3KQ96;Q13428;Q59FZ2 E7ETY2 706 716 TCOF1 Treacle protein no no 2 0.0018663 104.48 3 2 1.1134 1.703 19.238 4 Linear 0.97148 1.2215 12.141 2 0 Median 1.0741 1.6645 2.2875 2 0 Median 111290000 65976000 45309000 58158000 40034000 18124000 53128000 25942000 27185000 11793 1016;1135;1469 12109 42358;42359;42360;42361;42362 63594;63595;63596;63597;63598;63599;63600 63598 7 TGLFSATQTQEVENLVR ASINTILEFLPKQRRTGLFSATQTQEVENL LFSATQTQEVENLVRAGLRNPVRVSVKEKG R T G V R A 1 1 1 0 0 2 2 1 0 0 2 0 0 1 0 1 3 0 0 2 0 0 17 0 1891.964 B4DVE4;F5H5U2;A0A024RBS0;Q8NHQ9 B4DVE4 198 214 DDX55 ATP-dependent RNA helicase DDX55 yes no 2 1.9937E-18 113.24 3 0.81751 1.1167 7.7547 2 Median 0.81751 1.1167 7.7547 2 0 Median NaN NaN NaN 0 0 Median 12831000 7677300 5153300 12831000 7677300 5153300 0 0 0 11794 280 12110 42363;42364;42365 63601;63602;63603;63604;63605 63604 5 TGLIDYNQLALTAR TSIFFESMPYKLNPKTGLIDYNQLALTARL KTGLIDYNQLALTARLFRPRLIIAGTSAYA K T G A R L 2 1 1 1 0 1 0 1 0 1 3 0 0 0 0 0 2 0 1 0 0 0 14 0 1547.8308 G3V5L0;G3V2Y4;B4DJ63;B4DLV4;B4DW25;B4DP88;B4E1G2;Q5BJF5;Q5HYG8;B4DJQ3;A0A024RB99;V9HW06;Q53ET4;B4DWA7;P34897 G3V5L0 180 193 SHMT2;DKFZp686P09201;HEL-S-51e Serine hydroxymethyltransferase;Serine hydroxymethyltransferase, mitochondrial yes no 2 2.1691E-05 113.22 3 1 0.80124 1.0814 16.556 3 Median 0.80124 1.0814 16.556 3 0 Median NaN NaN NaN 0 0 Median 12722000 7725800 4996300 10406000 5409700 4996300 2316100 2316100 0 11795 266 12111 42366;42367;42368;42369 63606;63607;63608;63609 63607 4 TGNFISTSTSLPR SDDESEEDEDDLLQRTGNFISTSTSLPRGI QRTGNFISTSTSLPRGILKMKNCQHANAER R T G P R G 0 1 1 0 0 0 0 1 0 1 1 0 0 1 1 3 3 0 0 0 0 0 13 0 1379.7045 Q9Y5J1;B2RAX6 Q9Y5J1 221 233 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2 1.8548E-10 163.12 4 2 0.91323 1.2963 8.6231 6 Median 0.92605 1.2565 3.9053 4 0 Median 0.90926 1.4678 1.2755 2 0 Median 250760000 132670000 118090000 143990000 75955000 68031000 106780000 56716000 50060000 11796 1830 12112 42370;42371;42372;42373;42374;42375 63610;63611;63612;63613;63614;63615;63616;63617;63618;63619;63620;63621;63622 63615 13 TGNFQVTELGR ALMLDKNNLVKYDKKTGNFQVTELGRIASH YDKKTGNFQVTELGRIASHYYITNDTVQTY K T G G R I 0 1 1 0 0 1 1 2 0 0 1 0 0 1 0 0 2 0 0 1 0 0 11 0 1220.6149 O75643;A4FU77;Q9H8B9 O75643 976 986 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.00018566 96.756 4 2 0.60544 0.82283 22.574 6 Median 0.56979 0.75854 8.2199 4 0 Median 0.7967 1.1779 8.6335 2 0 Median 87590000 55206000 32384000 58251000 39284000 18968000 29339000 15922000 13417000 11797 1206 12113 42376;42377;42378;42379;42380;42381 63623;63624;63625;63626;63627;63628;63629;63630 63628 8 TGNLGNVVHIER NFEQFLREKVKVNGKTGNLGNVVHIERFKN NGKTGNLGNVVHIERFKNKITVVSEKQFSK K T G E R F 0 1 2 0 0 0 1 2 1 1 1 0 0 0 0 0 1 0 0 2 0 0 12 0 1307.6946 C9JYQ9;H0Y8C2;Q6P5R6 C9JYQ9 47 58 RPL22L1 60S ribosomal protein L22-like 1 yes no 3 0.034002 24.191 1 0.6885 0.91721 NaN 1 Median 0.6885 0.91721 NaN 1 0 Median NaN NaN NaN 0 0 Median 26252000 14314000 11938000 26252000 14314000 11938000 0 0 0 11798 945 12114 42382 63631 63631 1 TGPAAAQVQVGK KESPRKGAAPAPPRKTGPAAAQVQVGKQEE PRKTGPAAAQVQVGKQEEDSRSSSEESDSD K T G G K Q 3 0 0 0 0 2 0 2 0 0 0 1 0 0 1 0 1 0 0 2 0 0 12 0 1125.6142 E7ETY2;J3KQ96;Q13428;Q59FZ2 E7ETY2 459 470 TCOF1 Treacle protein no no 2 0.0024411 62.823 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1685000 0 1685000 1685000 0 1685000 0 0 0 11799 1016;1135;1469 12115 42383;42384 63632;63633 63632 2 TGPTVTQVK KGSLGQGTAPVLPGKTGPTVTQVKAEKQED PVLPGKTGPTVTQVKAEKQEDSESSEEESD K T G V K A 0 0 0 0 0 1 0 1 0 0 0 1 0 0 1 0 3 0 0 2 0 0 9 0 929.5182 E7ETY2;B4DRA2;B4DLB1;J3KQ96;Q13428;Q59FZ2 E7ETY2 747 755 TCOF1 Treacle protein no no 2 8.4482E-08 104.44 3 0.90825 1.1525 NaN 1 Median 0.90825 1.1525 NaN 1 0 Median NaN NaN NaN 0 0 Median 7100500 3885800 3214800 7100500 3885800 3214800 0 0 0 11800 1016;1135;1469 12116 42385;42386;42387 63634;63635;63636 63634 3 TGQAAELGGLLK VKEQSILELGSLLAKTGQAAELGGLLKYVR LAKTGQAAELGGLLKYVRPFLNSISKAKAA K T G L K Y 2 0 0 0 0 1 1 3 0 0 3 1 0 0 0 0 1 0 0 0 0 0 12 0 1156.6452 O00231;B4DTS5;J3QRY4 O00231 60 71 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 2 6.7379E-05 130.98 1 0.22199 0.28777 NaN 1 Median 0.22199 0.28777 NaN 1 0 Median NaN NaN NaN 0 0 Median 1864000 1513400 350600 1864000 1513400 350600 0 0 0 11801 1165 12117 42388 63637 63637 1 TGQALCSLQCYR SVPGCPHPRRYACSRTGQALCSLQCYRINL CSRTGQALCSLQCYRINLQMRLGGPEGPGS R T G Y R I 1 1 0 0 2 2 0 1 0 0 2 0 0 0 0 1 1 0 1 0 0 0 12 0 1455.6599 J3KQ70;B4DJ31;Q9C086;B4DJ22 J3KQ70 325 336 INO80B-WBP1;INO80B INO80 complex subunit B yes no 2 0.02334 68.786 1 0.41781 0.58817 NaN 1 Median 0.41781 0.58817 NaN 1 0 Median NaN NaN NaN 0 0 Median 1405900 883990 521880 1405900 883990 521880 0 0 0 11802 813 12118 42389 63638 63638 1 TGQEYKPGNPPAEIGQNISSNSSASILESK AVKQLLSLKAEYKEKTGQEYKPGNPPAEIG QNISSNSSASILESKSLYDEVAAQGEVVRK K T G S K S 2 0 3 0 0 2 3 3 0 3 1 2 0 0 3 6 1 0 1 0 0 0 30 1 3102.5106 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 795 824 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 3 4.7125E-24 87.25 4 1 0.59373 0.72877 82.322 5 Median 0.569 0.69787 13.633 4 0 Median 2.7933 4.4189 NaN 1 0 Median 110220000 64803000 45418000 92835000 61526000 31310000 17385000 3277200 14108000 11803 1242 12119 42390;42391;42392;42393;42394 63639;63640;63641;63642;63643;63644;63645;63646 63642 8 TGQLFLK TTKPINGAIFIFNPRTGQLFLKIIHTSVWA AIFIFNPRTGQLFLKIIHTSVWAGQKRLGQ R T G L K I 0 0 0 0 0 1 0 1 0 0 2 1 0 1 0 0 1 0 0 0 0 0 7 0 805.46979 Q6P2Q9;B4DK16;Q6JH02;Q6JH03 Q6P2Q9 1814 1820 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.015517 88.029 4 0.67276 0.83724 12.288 4 Linear 0.67276 0.83724 12.288 4 0 Linear NaN NaN NaN 0 0 Median 70220000 45536000 24684000 70220000 45536000 24684000 0 0 0 11804 1592 12120 42395;42396;42397;42398 63647;63648;63649;63650;63651 63649 5 TGSQYDIQDAIDK TGSDGSTRVVLVDRKTGSQYDIQDAIDKGL RKTGSQYDIQDAIDKGLVDRKFFDQYRSGS K T G D K G 1 0 0 3 0 2 0 1 0 2 0 1 0 0 0 1 1 0 1 0 0 0 13 0 1452.6733 P15924;Q4LE79 P15924 2524 2536 DSP;DSP variant protein Desmoplakin yes no 2 0.0033619 49.5 1 0.46694 0.60602 NaN 1 Median 0.46694 0.60602 NaN 1 0 Median NaN NaN NaN 0 0 Median 5717600 3102000 2615600 5717600 3102000 2615600 0 0 0 11805 1270 12121 42399 63652 63652 1 TGSSSLPGRPSVIPDHSK RIPGSKKSPEGLISRTGSSSLPGRPSVIPD SSLPGRPSVIPDHSKKNIGNGIISSPLTGK R T G S K K 0 1 0 1 0 0 0 2 1 1 1 1 0 0 3 5 1 0 0 1 0 0 18 1 1820.9381 A0A024R8V6;Q9P275;A0A075B784;Q9H9C5;E9PEW0;B3KMW2;K7EMM6 A0A024R8V6 437 454 USP36;DUB1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 3 0.029586 19.036 1 0.96902 1.2454 NaN 1 Median 0.96902 1.2454 NaN 1 0 Median NaN NaN NaN 0 0 Median 6692100 2472300 4219800 6692100 2472300 4219800 0 0 0 11806 205 12122 42400 63653 63653 1 TGSVTTTYCCNQDHCNK LIPRDRPFVCAPSSKTGSVTTTYCCNQDHC SVTTTYCCNQDHCNKIELPTTGLPLLVQRT K T G N K I 0 0 2 1 3 1 0 1 1 0 0 1 0 0 0 1 4 0 1 1 0 0 17 0 2044.8037 F8VXZ5;F8VRH6;F8VVC4;H0YHS4;F8W0K6;F8W1R9;B4DY26;B4DXN7;Q5T7S2;P36897 F8VXZ5 23 39 TGFBR1 Receptor protein serine/threonine kinase;TGF-beta receptor type-1 yes no 3 0.00075479 75.316 2 1.0833 1.3751 24.625 2 Median 1.0833 1.3751 24.625 2 0 Median NaN NaN NaN 0 0 Median 2598100 1312600 1285500 2598100 1312600 1285500 0 0 0 11807 869 12123 42401;42402 63654;63655 63654 2 TGSYGALAEITASK RKDESPATWRLGLRKTGSYGALAEITASKE KTGSYGALAEITASKEGQKEKDTAGVTRSA K T G S K E 3 0 0 0 0 0 1 2 0 1 1 1 0 0 0 2 2 0 1 0 0 0 14 0 1367.6933 B2RAH5;O14974;F8VZN8;A0A024RBF1;H0YIS4;H0YHI8 B2RAH5 443 456 PPP1R12A Protein phosphatase 1 regulatory subunit;Protein phosphatase 1 regulatory subunit 12A yes no 2 6.8737E-05 107.34 3 0.92351 1.1963 13.384 3 Median 0.92351 1.1963 13.384 3 0 Median NaN NaN NaN 0 0 Median 12325000 5557500 6767700 12325000 5557500 6767700 0 0 0 11808 723 12124 42403;42404;42405 63656;63657;63658 63656 3 TGTAEMSSILEER IAARNFHASNTHLQKTGTAEMSSILEERIL QKTGTAEMSSILEERILGADTSVDLEETGR K T G E R I 1 1 0 0 0 0 3 1 0 1 1 0 1 0 0 2 2 0 0 0 0 0 13 0 1422.6661 K7ERX7;V9HW26;P25705;K7ESA0 K7ERX7 46 58 ATP5A1;HEL-S-123m ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 2 0.00845 51.567 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8667100 0 8667100 0 0 0 8667100 0 8667100 11809 1154 12125 42406;42407 63659;63660 63660 411 2 TGTAYTFFTPNNIK EDYIHRIGRTARSTKTGTAYTFFTPNNIKQ KTGTAYTFFTPNNIKQVSDLISVLREANQA K T G I K Q 1 0 2 0 0 0 0 1 0 1 0 1 0 2 1 0 4 0 1 0 0 0 14 0 1573.7777 B4DN41;J3KTA4;B5BUE6;P17844;B4DNG2 B4DN41 427 440 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2 7.355E-08 139.15 3 2 0.48519 0.60402 83.645 5 Median 0.40457 0.51318 10.191 3 0 Median 1.6155 2.459 5.1974 2 0 Median 132210000 76786000 55426000 89137000 61447000 27690000 43075000 15339000 27736000 11810 833 12126 42408;42409;42410;42411;42412 63661;63662;63663;63664;63665;63666;63667;63668;63669 63664 9 TGTITTFEHAHNMR GNIVGLVGVDQFLVKTGTITTFEHAHNMRV KTGTITTFEHAHNMRVMKFSVSPVVRVAVE K T G M R V 1 1 1 0 0 0 1 1 2 1 0 0 1 1 0 0 4 0 0 0 0 0 14 0 1614.7573 P13639;Q8TA90;Q6PK56 P13639 482 495 EEF2 Elongation factor 2 yes no 3 0.00093868 42.785 1 4.0861 5.3988 NaN 1 Median NaN NaN NaN 0 0 Median 4.0861 5.3988 NaN 1 0 Median 2895500 807790 2087700 0 0 0 2895500 807790 2087700 11811 1264 12127 42413 63670 63670 528 1 TGTIVVEGHELHDEDIR SIKQLSSEELEQFQKTGTIVVEGHELHDED TIVVEGHELHDEDIRLMYTFDQATGGTAQF K T G I R L 0 1 0 2 0 0 3 2 2 2 1 0 0 0 0 0 2 0 0 2 0 0 17 0 1918.9385 Q59G75;P41252;J3KR24;A0A0A0MSX9;Q7Z355;Q7Z3U5;B4DVX2;Q7L4K8;Q9P1N9 Q59G75 947 963 IARS;DKFZp686L17145;DKFZp686L0869 Isoleucine--tRNA ligase, cytoplasmic yes no 3 1.6482E-05 68.978 2 0.7348 0.98457 3.5055 2 Median 0.7348 0.98457 3.5055 2 0 Median NaN NaN NaN 0 0 Median 20662000 10572000 10091000 20662000 10572000 10091000 0 0 0 11812 1334 12128 42414;42415 63671;63672 63672 2 TGTQEVGGQDPGEAVQPCR ALNLEGCALSQGSLRTGTQEVGGQDPGEAV EVGGQDPGEAVQPCRQPLGARVADKVRKRR R T G C R Q 1 1 0 1 1 3 2 4 0 0 0 0 0 0 2 0 2 0 0 2 0 0 19 0 1984.8909 Q6PK21;A0A0A0MRN5;Q05BV5;Q9NZT2;B3KMQ6 Q6PK21 282 300 OGFR Opioid growth factor receptor yes no 2 1.0482E-17 156.2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 995790 995790 0 995790 995790 0 0 0 0 11813 389 12129 42416;42417 63673;63674 63674 2 TGTSCALDCGAGIGR SRKFLQRFLREGPNKTGTSCALDCGAGIGR TGTSCALDCGAGIGRITKRLLLPLFREVDM K T G G R I 2 1 0 1 2 0 0 4 0 1 1 0 0 0 0 1 2 0 0 0 0 0 15 0 1494.6555 A0A024R8E4;Q9BV86 A0A024R8E4 60 74 C9orf32;NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed yes no 2 6.0889E-20 167.2 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12484000 12484000 0 12484000 12484000 0 0 0 0 11814 196 12130 42418;42419;42420;42421 63675;63676;63677;63678;63679 63675 5 TGTVSLEVR VFEDVVLHQATILPKTGTVSLEVRLLEASR ATILPKTGTVSLEVRLLEASRAFEVSENGN K T G V R L 0 1 0 0 0 0 1 1 0 0 1 0 0 0 0 1 2 0 0 2 0 0 9 0 960.52401 A0A0U1RQF0;P49327 A0A0U1RQF0 928 936 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.017684 87.476 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2343300 2343300 0 2343300 2343300 0 0 0 0 11815 486 12131 42422 63680 63680 1 TGVAVNKPAEFTVDAK FHPDRVKARGPGLEKTGVAVNKPAEFTVDA GVAVNKPAEFTVDAKHGGKAPLRVQVQDNE K T G A K H 3 0 1 1 0 0 1 1 0 0 0 2 0 1 1 0 2 0 0 3 0 0 16 1 1645.8675 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 685 700 FLNA Filamin-A yes no 2;3 3.5061E-13 152.16 6 1 0.89493 1.0994 46.292 4 Median 0.89493 1.1402 11.758 3 0 Plateau 1.7487 2.5895 NaN 1 0 Median 83649000 52094000 31554000 79792000 51074000 28718000 3856500 1020300 2836100 11816 1287 12132 42423;42424;42425;42426;42427;42428;42429 63681;63682;63683;63684;63685;63686;63687;63688;63689 63687 9 TGVCICFYQHK ESYIHRSGRTGRAGRTGVCICFYQHKEEYQ RAGRTGVCICFYQHKEEYQLVQVEQKAGIK R T G H K E 0 0 0 0 2 1 0 1 1 1 0 1 0 1 0 0 1 0 1 1 0 0 11 0 1411.6377 Q9NR30 Q9NR30 534 544 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 0.0022542 76.679 4 1 0.60393 0.76612 55.458 4 Median 0.63512 0.80409 9.8468 3 0 Median 0.18227 0.26865 NaN 1 0 Median 40180000 24941000 15239000 34304000 20054000 14250000 5875900 4886500 989430 11817 1756 12133 42430;42431;42432;42433;42434 63690;63691;63692;63693;63694;63695 63694 6 TGVELGKPTHFTVNAK HDASKVKAEGPGLSRTGVELGKPTHFTVNA GVELGKPTHFTVNAKAAGKGKLDVQFSGLT R T G A K A 1 0 1 0 0 0 1 2 1 0 1 2 0 1 1 0 3 0 0 2 0 0 16 1 1697.9101 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 885 900 FLNA Filamin-A yes no 3;4 4.1566E-26 114.27 3 0.92015 1.1289 6.0735 3 Median 0.92015 1.1289 6.0735 3 0 Median NaN NaN NaN 0 0 Median 83621000 44542000 39080000 83621000 44542000 39080000 0 0 0 11818 1287 12134 42435;42436;42437 63696;63697;63698;63699;63700 63697 5 TGVHHYSGNNIELGTACGK ALRKSEIEYYAMLAKTGVHHYSGNNIELGT HYSGNNIELGTACGKYYRVCTLAIIDPGDS K T G G K Y 1 0 2 0 1 0 1 4 2 1 1 1 0 0 0 1 2 0 1 1 0 0 19 0 2013.9327 E5RI99;A0A024R9D3;P62888;A0A0B4J213 E5RI99 69 87 RPL30 60S ribosomal protein L30 yes no 2;3;4 2.9446E-72 197.73 10 0.77905 1.0155 5.4805 10 Median 0.77905 1.0155 5.4805 10 0 Median NaN NaN NaN 0 0 Median 1582000000 906640000 675380000 1582000000 906640000 675380000 0 0 0 11819 219 12135 42438;42439;42440;42441;42442;42443;42444;42445;42446;42447 63701;63702;63703;63704;63705;63706;63707;63708;63709;63710;63711;63712;63713;63714;63715;63716;63717;63718;63719;63720 63710 20 TGVTSTSDSEEEGDDQEGEK EGKKEVESKRKNLAKTGVTSTSDSEEEGDD TSDSEEEGDDQEGEKKRKGGRNFQTAHRRN K T G E K K 0 0 0 3 0 1 5 3 0 0 0 1 0 0 0 3 3 0 0 1 0 0 20 0 2098.8298 O75475 O75475 267 286 PSIP1 PC4 and SFRS1-interacting protein yes yes 2 3.5946E-09 71.879 1 0.87488 1.1162 NaN 1 Median 0.87488 1.1162 NaN 1 0 Median NaN NaN NaN 0 0 Median 6663400 3428700 3234700 6663400 3428700 3234700 0 0 0 11820 1201 12136 42448 63721;63722 63721 2 TGVTSTSDSEEEGDDQEGEKK EGKKEVESKRKNLAKTGVTSTSDSEEEGDD SDSEEEGDDQEGEKKRKGGRNFQTAHRRNM K T G K K R 0 0 0 3 0 1 5 3 0 0 0 2 0 0 0 3 3 0 0 1 0 0 21 1 2226.9248 O75475 O75475 267 287 PSIP1 PC4 and SFRS1-interacting protein yes yes 3 2.9717E-05 45.784 1 1 0.62123 0.84136 8.6231 2 Median 0.73603 0.89426 NaN 1 0 Median 0.52433 0.79159 NaN 1 0 Median 10853000 6391100 4462100 6262500 3439300 2823200 4590800 2951800 1639000 11821 1201 12137 42449;42450 63723;63724;63725;63726 63725 4 TGVVPQLVK YLTDGPNERIGMVVKTGVVPQLVKLLGASE IGMVVKTGVVPQLVKLLGASELPIVTPALR K T G V K L 0 0 0 0 0 1 0 1 0 0 1 1 0 0 1 0 1 0 0 3 0 0 9 0 939.57532 Q7Z726;A8K7D9;P52292 Q7Z726 292 300 KPNA2 Importin subunit alpha;Importin subunit alpha-1 yes no 2 0.0039221 77.282 3 1 0.48806 0.62409 5.5403 4 Median 0.49738 0.61954 6.7165 3 0 Median 0.41354 0.62867 NaN 1 0 Median 52645000 35310000 17336000 41386000 27500000 13885000 11260000 7809500 3450300 11822 633 12138 42451;42452;42453;42454 63727;63728;63729;63730;63731;63732 63730 6 TGYTLDVTTGQR TKGPDEAKIKALLERTGYTLDVTTGQRKYG LERTGYTLDVTTGQRKYGGPPPDSVYSGVQ R T G Q R K 0 1 0 1 0 1 0 2 0 0 1 0 0 0 0 0 4 0 1 1 0 0 12 0 1310.6466 Q05CK9;Q59GL1;B2R8Z8;O60506;B7Z645;F6UXX1;Q0VGD6;Q6MZS5;B2R7W4;O43390;B4DMD1 Q0VGD6 108 119 SYNCRIP;HNRPR;DKFZp686A13234;HNRNPR Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R no no 2 1.9267E-05 126.71 2 2 1.2462 1.6951 75.726 4 Median 0.60242 0.81 42.663 2 0 Median 1.957 2.7912 8.7589 2 0 Median 51912000 26849000 25062000 29908000 19323000 10584000 22004000 7526100 14478000 11823 711;718 12139 42455;42456;42457;42458 63733;63734;63735;63736;63737 63735 5 THEAEIVEGENHTYCIR SIQDMTAQVTSPSGKTHEAEIVEGENHTYC EAEIVEGENHTYCIRFVPAEMGTHTVSVKY K T H I R F 1 1 1 0 1 0 4 1 2 2 0 0 0 0 0 0 2 0 1 1 0 0 17 0 2056.9273 P21333;Q5HY54;Q60FE6;Q60FE5;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5;Q2VP91;H0Y5C6 P21333 2185 2201 FLNA;FLJ00119 Filamin-A yes no 3 0.00063214 77.726 3 0.86434 1.1782 16.083 3 Median 0.86434 1.1782 16.083 3 0 Median NaN NaN NaN 0 0 Median 24153000 13050000 11103000 24153000 13050000 11103000 0 0 0 11824 1287 12140 42459;42460;42461 63738;63739;63740;63741;63742 63739 5 THEAQIQEMR QEVNILKKTLEEEAKTHEAQIQEMRQKHSQ EEEAKTHEAQIQEMRQKHSQAVEELAEQLE K T H M R Q 1 1 0 0 0 2 2 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 10 0 1241.5823 A0A024R1N1;P35579;Q86XU5;A0A0U4BW16 A0A024R1N1 1182 1191 MYH9 Myosin-9 no no 2 0.0087791 63.184 2 1.6031 2.217 NaN 1 Median 1.6031 2.217 NaN 1 0 Median NaN NaN NaN 0 0 Median 13916000 5398700 8516900 13916000 5398700 8516900 0 0 0 11825 61;490 12141 42462;42463 63743;63744 63744 2 THFFLNAGNLCNLNYGEGPK LPFRPGQGGFGELFRTHFFLNAGNLCNLNY NAGNLCNLNYGEGPKAHIRKLAECIRWSYG R T H P K A 1 0 4 0 1 0 1 3 1 0 3 1 0 2 1 0 1 0 1 0 0 0 20 0 2265.0637 Q9Y512;B4DN54;B3KUE6 Q9Y512 393 412 SAMM50 Sorting and assembly machinery component 50 homolog yes no 3 8.7789E-10 80.994 3 0.46392 0.56789 0.90044 3 Plateau 0.46392 0.56789 0.90044 3 0 Plateau NaN NaN NaN 0 0 Median 57609000 41222000 16387000 57609000 41222000 16387000 0 0 0 11826 1827 12142 42464;42465;42466 63745;63746;63747;63748;63749 63748 5 THFTHSQFIVVSLK ALDLSHTQNIGQMLRTHFTHSQFIVVSLKE RTHFTHSQFIVVSLKEGMFNNANVLFKTKF R T H L K E 0 0 0 0 0 1 0 0 2 1 1 1 0 2 0 2 2 0 0 2 0 0 14 0 1642.8831 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1 A0A024R158 1133 1146 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 3 1.6546E-10 117.08 5 2 0.68636 0.92359 8.2654 6 Median 0.70694 0.87636 5.1844 4 0 Median 0.64603 1.0239 3.799 2 0 Median 247660000 150590000 97066000 168320000 99938000 68380000 79338000 50653000 28685000 11827 50 12143 42467;42468;42469;42470;42471;42472;42473 63750;63751;63752;63753;63754;63755;63756;63757;63758;63759;63760;63761;63762 63754 13 THGLLV KNVEKKIDKYTEVLKTHGLLV_________ IDKYTEVLKTHGLLV_______________ K T H L V - 0 0 0 0 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 1 0 0 6 0 638.37516 Q53H34;P40429;Q5QTS3;M0QYS1;Q8J015;Q0VGL3;Q9BSQ6 Q53H34 198 203 RPL13A;RPL13a 60S ribosomal protein L13a no no 2 0.048537 70.49 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 318210000 0 0 318210000 0 0 0 0 0 11828 1332;1712 12144 42474 63763 63763 1 THIDVIHYR IRVNPRVSNVKSVYKTHIDVIHYRKTDAKR VKSVYKTHIDVIHYRKTDAKRLHGLDEEAE K T H Y R K 0 1 0 1 0 0 0 0 2 2 0 0 0 0 0 0 1 0 1 1 0 0 9 0 1152.604 B4DLA6;B3KMX0;A0A024R7U6;P33991;E5RG31 B4DLA6 374 382 MCM4 DNA replication licensing factor MCM4 yes no 3 0.00058476 74.376 3 0.3932 0.52279 NaN 1 Median 0.3932 0.52279 NaN 1 0 Median NaN NaN NaN 0 0 Median 26257000 21508000 4749700 26257000 21508000 4749700 0 0 0 11829 185 12145 42475;42476;42477 63764;63765;63766 63766 3 THINIVVIGHVDSGK ______________________________ THINIVVIGHVDSGKSTTTGHLIYKFGGID K T H G K S 0 0 1 1 0 0 0 2 2 3 0 1 0 0 0 1 1 0 0 3 0 0 15 0 1587.8733 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;P68104;A8K9C4;Q5VTE0;A0A087WVQ9;Q53GE9;Q53GA1;Q53G85;B4DNE0;A0A087WV01;Q9H2I7;Q05639;A6PW80;Q5JR01;Q6NS35;Q6NSH7 Q6IPT9 6 20 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 yes no 2;3;4 2.207E-15 115.58 18 3 0.40403 0.5352 98.085 13 Median 0.3985 0.5208 21.043 11 0 Median 4.2714 6.8293 8.9046 2 0 Median 1073100000 709450000 363640000 955710000 686490000 269220000 117380000 22962000 94417000 11830 1421 12146 42478;42479;42480;42481;42482;42483;42484;42485;42486;42487;42488;42489;42490;42491;42492;42493;42494;42495;42496;42497;42498 63767;63768;63769;63770;63771;63772;63773;63774;63775;63776;63777;63778;63779;63780;63781;63782;63783;63784;63785;63786;63787;63788;63789;63790;63791;63792;63793;63794;63795;63796;63797;63798;63799;63800;63801 63791 33 THINYGVK YICRNFTGSSALLTRTHINYGVKGDVAVVR SSALLTRTHINYGVKGDVAVVRINSPNSKV R T H V K G 0 0 1 0 0 0 0 1 1 1 0 1 0 0 0 0 1 0 1 1 0 0 8 0 930.49232 E9KL44;P40939;B4DRH6 E9KL44 39 46 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.005327 90.777 1 0.75377 0.92699 NaN 1 Median 0.75377 0.92699 NaN 1 0 Median NaN NaN NaN 0 0 Median 18420000 9331800 9088500 18420000 9331800 9088500 0 0 0 11831 1020 12147 42499 63802 63802 1 THIQDNHDGTYTVAYVPDVTGR LLAVQITDPEGKPKKTHIQDNHDGTYTVAY DGTYTVAYVPDVTGRYTILIKYGGDEIPFS K T H G R Y 1 1 1 3 0 1 0 2 2 1 0 0 0 0 1 0 4 0 2 3 0 0 22 0 2458.1513 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1594 1615 FLNA;FLJ00119 Filamin-A yes no 3 0.0035907 27.61 2 0.94761 1.296 11.034 2 Median 0.94761 1.296 11.034 2 0 Median NaN NaN NaN 0 0 Median 12489000 6201900 6286900 12489000 6201900 6286900 0 0 0 11832 1287 12148 42500;42501 63803;63804;63805 63803 3 THLASDDLYK ELEEMGPSLDLVLRRTHLASDDLYKLSMKM LVLRRTHLASDDLYKLSMKMPKALKPKKKK R T H Y K L 1 0 0 2 0 0 0 0 1 0 2 1 0 0 0 1 1 0 1 0 0 0 10 0 1161.5666 A8K800;Q9H7B2;Q5VXN0;B4DWS5 A8K800 228 237 RPF2 Ribosome production factor 2 homolog yes no 2 0.0002688 106.88 4 2 0.77341 1.0279 8.134 5 Median 0.80152 1.027 3.0804 3 0 Plateau 0.71994 1.1479 0.15791 2 0 Median 229480000 132570000 96910000 149780000 86902000 62881000 79701000 45672000 34029000 11833 637 12149 42502;42503;42504;42505;42506;42507 63806;63807;63808;63809;63810;63811 63809 6 THLSLSHNPEQK YTKQGFGNLPICMAKTHLSLSHNPEQKGVP MAKTHLSLSHNPEQKGVPTGFILPIRDIRA K T H Q K G 0 0 1 0 0 1 1 0 2 0 2 1 0 0 1 2 1 0 0 0 0 0 12 0 1389.7001 A0A024R652;F5H2F4;B7Z809;P11586;V9GYY3 A0A024R652 867 878 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2;3 0.0013528 79.23 2 0.44465 0.56395 32.635 2 Median 0.44465 0.56395 32.635 2 0 Median NaN NaN NaN 0 0 Median 8168700 5021700 3147000 8168700 5021700 3147000 0 0 0 11834 154 12150 42508;42509 63812;63813;63814 63814 3 THNLEPYFESFINNLR QTKWELLQQVDTSTRTHNLEPYFESFINNL HNLEPYFESFINNLRRRVDQLKSDQSRLDS R T H L R R 0 1 3 0 0 0 2 0 1 1 2 0 0 2 1 1 1 0 1 0 0 0 16 0 1992.9694 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 224 239 KRT1 Keratin, type II cytoskeletal 1 no no 2;3 9.5436E-16 156.72 10 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1382100000 1382100000 0 815790000 815790000 0 566280000 566280000 0 + 11835 1113;1114 12151 42510;42511;42512;42513;42514;42515;42516;42517;42518;42519;42520;42521 63815;63816;63817;63818;63819;63820;63821;63822;63823;63824;63825;63826;63827;63828;63829;63830;63831 63815 17 THNLEPYFESFINNLRR QTKWELLQQVDTSTRTHNLEPYFESFINNL NLEPYFESFINNLRRRVDQLKSDQSRLDSE R T H R R R 0 2 3 0 0 0 2 0 1 1 2 0 0 2 1 1 1 0 1 0 0 0 17 1 2149.0705 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 224 240 KRT1 Keratin, type II cytoskeletal 1 no no 3;4 1.1521E-11 126.63 4 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 744500000 744500000 0 244740000 244740000 0 499760000 499760000 0 + 11836 1113;1114 12152 42522;42523;42524;42525;42526;42527;42528;42529 63832;63833;63834;63835;63836;63837;63838;63839;63840;63841 63837 10 THNVHVEIEQR MEVDRSPGLPMSDLKTHNVHVEIEQRWHQV SDLKTHNVHVEIEQRWHQVETTPLREEKQV K T H Q R W 0 1 1 0 0 1 2 0 2 1 0 0 0 0 0 0 1 0 0 2 0 0 11 0 1360.6848 B9EGI2;U6FSN9;Q6WCQ1;J3KSW8;H0Y2S9;Q8N236 B9EGI2 628 638 MPRIP;Mprip-Ntrk1 fusion gene Tyrosine-protein kinase receptor;Myosin phosphatase Rho-interacting protein yes no 2 0.0038276 55.567 1 2.2556 3.0215 NaN 1 Median 2.2556 3.0215 NaN 1 0 Median NaN NaN NaN 0 0 Median 2040400 560900 1479500 2040400 560900 1479500 0 0 0 11837 928 12153 42530 63842 63842 1 THPVEIFYTPEPERDYLEAAIR QIYFDNCPLLTIPGRTHPVEIFYTPEPERD YTPEPERDYLEAAIRTVIQIHMCEEEEGDL R T H I R T 2 2 0 1 0 0 4 0 1 2 1 0 0 1 3 0 2 0 2 1 0 0 22 1 2645.3126 O43143;B4E0S6 O43143 316 337 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 3;4 0.00044643 49.141 4 4 0.69482 0.98698 23.901 8 Median 0.57598 0.78896 9.1001 4 0 Median 0.80412 1.194 14.11 4 0 Median 142970000 79283000 63691000 79688000 47194000 32494000 63286000 32090000 31196000 11838 1180 12154 42531;42532;42533;42534;42535;42536;42537;42538 63843;63844;63845;63846;63847;63848;63849;63850;63851;63852 63846 10 THQALGILSK DISQAAQILSSDPSRTHQALGILSKTYDAA SDPSRTHQALGILSKTYDAASYICEAAFDE R T H S K T 1 0 0 0 0 1 0 1 1 1 2 1 0 0 0 1 1 0 0 0 0 0 10 0 1066.6135 P42166 P42166 611 620 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2 0.0096918 77.379 2 1 0.41417 0.52449 96.897 3 Median 0.39981 0.49931 6.9584 2 0 Median 1.855 2.6688 NaN 1 0 Median 36733000 25308000 11425000 30304000 22699000 7605800 6429100 2609800 3819300 11839 1335 12155 42539;42540;42541 63853;63854;63855 63855 2 THQPSDEVGTSIEHPR DLRRSEVPCAPMPKKTHQPSDEVGTSIEHP HQPSDEVGTSIEHPREAEEVMDAGCQESAG K T H P R E 0 1 0 1 0 1 2 1 2 1 0 0 0 0 2 2 2 0 0 1 0 0 16 0 1788.8391 Q96F88;Q99575 Q96F88 752 767 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 3 4.8283E-05 64.588 2 2 0.43293 0.5625 7.0906 2 Median NaN NaN NaN 0 0 Median 0.43293 0.5625 7.0906 2 0 Median 29626000 27087000 2538700 20574000 20574000 0 9051600 6513000 2538700 11840 1685 12156 42542;42543;42544;42545 63856;63857;63858;63859;63860 63856 5 THSDQFLVAFK MLVGIGDKIRGILYRTHSDQFLVAFKEVGR ILYRTHSDQFLVAFKEVGRKPPTFGDASVI R T H F K E 1 0 0 1 0 1 0 0 1 0 1 1 0 2 0 1 1 0 0 1 0 0 11 0 1291.6561 B4DL14;Q8TAS0;P36542 B4DL14 97 107 ATP5C1 ATP synthase subunit gamma;ATP synthase subunit gamma, mitochondrial yes no 2 0.043207 36.585 1 0.92145 1.1634 NaN 1 Median 0.92145 1.1634 NaN 1 0 Median NaN NaN NaN 0 0 Median 9530600 4048200 5482400 9530600 4048200 5482400 0 0 0 11841 824 12157 42546 63861 63861 1 THSVNGITEEADPTIYSGK SKGKGNKVSAEKVNKTHSVNGITEEADPTI NGITEEADPTIYSGKVIRPLRSVDPTQNEY K T H G K V 1 0 1 1 0 0 2 2 1 2 0 1 0 0 1 2 3 0 1 1 0 0 19 0 2017.9593 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0;Q9UG93;Q8WU01 Q9GZV0 551 569 CSDE1;UNR;DKFZp586J0620 Cold shock domain-containing protein E1 yes no 3 0.0023739 90.581 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1652100 1652100 0 1652100 1652100 0 0 0 0 11842 31 12158 42547;42548 63862;63863;63864 63862 3 THSVPATPTSTPVPNPEAESSSK NEPPGRELTKEDLFKTHSVPATPTSTPVPN TSTPVPNPEAESSSKEGELDARDLEMSKKV K T H S K E 2 0 1 0 0 0 2 0 1 0 0 1 0 0 5 5 4 0 0 2 0 0 23 0 2320.1183 A0A024R5D6;B5MBX0;Q96FF9 A0A024R5D6 105 127 CDCA5 Sororin yes no 3 1.6514E-06 88.765 4 2 0.75871 1.0075 13.817 4 Median 0.87876 1.1398 16.097 2 0 Median 0.68298 0.96219 5.1509 2 0 Median 24287000 15687000 8600500 14727000 10277000 4449400 9560500 5409400 4151100 11843 141 12159 42549;42550;42551;42552;42553;42554 63865;63866;63867;63868;63869;63870;63871;63872;63873;63874;63875;63876 63866 12 THTCQVIIENVSK SSGLDRMAKHLSQRKTHTCQVIIENVSKST RKTHTCQVIIENVSKSTSTSEPTTGCSLK_ K T H S K S 0 0 1 0 1 1 1 0 1 2 0 1 0 0 0 1 2 0 0 2 0 0 13 0 1527.7715 Q8ND82 Q8ND82 711 723 ZNF280C Zinc finger protein 280C yes yes 2 5.5552E-48 213.63 6 0.63591 0.82149 50.449 2 Median 0.63591 0.82149 50.449 2 0 Median NaN NaN NaN 0 0 Median 19193000 6933700 12259000 19193000 6933700 12259000 0 0 0 11844 1652 12160 42555;42556;42557;42558;42559;42560 63877;63878;63879;63880;63881;63882;63883 63880 7 THTDTESEASILGDSGEYK LRVCFGMLPKSKTSKTHTDTESEASILGDS TESEASILGDSGEYKMILVVRNDLKMGKGK K T H Y K M 1 0 0 2 0 0 3 2 1 1 1 1 0 0 0 3 3 0 1 0 0 0 19 0 2038.8967 Q96ME4;J3KQ48;Q9Y3E5 Q96ME4 48 66 PTRH2 Peptidyl-tRNA hydrolase 2, mitochondrial yes no 3 0.022744 17.369 1 0.53681 0.67455 NaN 1 Median 0.53681 0.67455 NaN 1 0 Median NaN NaN NaN 0 0 Median 17310000 10593000 6717200 17310000 10593000 6717200 0 0 0 11845 1134 12161 42561 63884 63884 1 THTIQGTIK QNWLIYTYGVTNSGKTHTIQGTIKDGGILP VTNSGKTHTIQGTIKDGGILPRSLALIFNS K T H I K D 0 0 0 0 0 1 0 1 1 2 0 1 0 0 0 0 3 0 0 0 0 0 9 0 997.55564 O95235;D6RBN1 O95235 167 175 KIF20A Kinesin-like protein KIF20A;Kinesin-like protein yes no 2 8.2011E-23 187.82 4 2 0.84361 1.0728 12.944 4 Median 0.84361 1.0728 12.944 4 0 Median NaN NaN NaN 0 0 Median 228890000 107410000 121480000 199910000 107410000 92501000 28975000 0 28975000 11846 1215 12162 42562;42563;42564;42565;42566;42567 63885;63886;63887;63888;63889;63890;63891;63892;63893 63889 9 THYIVGYNLPSYEYLYNLGDQYALK EMEIRPRFPLFGGWKTHYIVGYNLPSYEYL SYEYLYNLGDQYALKMRFVDHVFDEQVIDS K T H L K M 1 0 2 1 0 1 1 2 1 1 4 1 0 0 1 1 1 0 6 1 0 0 25 0 2996.4596 Q96HX3;Q6IBR0;Q53EP4;P04843;B7Z4L4;B4DNJ5 Q96HX3 289 313 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 3 9.6657E-05 61.141 2 0.51681 0.66397 1.883 2 Median 0.51681 0.66397 1.883 2 0 Median NaN NaN NaN 0 0 Median 5711400 3663000 2048400 5711400 3663000 2048400 0 0 0 11847 1233 12163 42568;42569 63894;63895 63895 2 THYQADIER GLVTDAFKLKRKELKTHYQADIERMYGRK_ KRKELKTHYQADIERMYGRK__________ K T H E R M 1 1 0 1 0 1 1 0 1 1 0 0 0 0 0 0 1 0 1 0 0 0 9 0 1131.5309 B3KN05;B2RBE0;A0A024R497;O95573;B3KMA6;Q6PIM8 B3KN05 696 704 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes no 2 0.037047 78.516 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1504800 1504800 0 1504800 1504800 0 0 0 0 11848 118 12164 42570 63896 63896 1 TIADSLINSFLK GSSLDFFGQSYDEERTIADSLINSFLKIYN EERTIADSLINSFLKIYNGLFAISKAHEEQ R T I L K I 1 0 1 1 0 0 0 0 0 2 2 1 0 1 0 2 1 0 0 0 0 0 12 0 1320.7289 Q15058 Q15058 1262 1273 KIF14 Kinesin-like protein KIF14 yes yes 2 7.8577E-06 104.52 4 0.8092 1.0472 14.504 4 Median 0.8092 1.0472 14.504 4 0 Median NaN NaN NaN 0 0 Median 17426000 9281400 8145000 17426000 9281400 8145000 0 0 0 11849 1504 12165 42571;42572;42573;42574 63897;63898;63899;63900;63901;63902;63903;63904 63902 8 TIAECLADELINAAK LLCTGAREAAFRNIKTIAECLADELINAAK TIAECLADELINAAKGSSNSYAIKKKDELE K T I A K G 4 0 1 1 1 0 2 0 0 2 2 1 0 0 0 0 1 0 0 0 0 0 15 0 1630.8236 M0R0F0;Q53G25;A0A024R4Q8;M0R0R2;P46782;M0QZN2 M0R0F0 168 182 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 2 3.3258E-61 233.13 4 0.83955 1.1077 8.8707 4 Median 0.83955 1.1077 8.8707 4 0 Median NaN NaN NaN 0 0 Median 754650000 395790000 358860000 754650000 395790000 358860000 0 0 0 11850 126 12166 42575;42576;42577;42578 63905;63906;63907;63908;63909;63910;63911;63912;63913;63914;63915;63916;63917;63918;63919 63906 15 TIAFAHDSTR KLMSDLQKLIQGKIKTIAFAHDSTRVIQCY QGKIKTIAFAHDSTRVIQCYIQYGNEEQRK K T I T R V 2 1 0 1 0 0 0 0 1 1 0 0 0 1 0 1 2 0 0 0 0 0 10 0 1117.5516 Q15397 Q15397 172 181 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 2;3 0.0044197 59.908 2 1 0.46313 0.60641 70.739 2 Median 0.76481 0.99999 NaN 1 0 Median 0.28044 0.36773 NaN 1 0 Median 10962000 5853900 5108300 7794200 3473500 4320700 3168000 2380400 787570 11851 1511 12167 42579;42580;42581 63920;63921;63922;63923;63924 63923 5 TIAIIAEGIPEALTR AYDSTMETMNYAQIRTIAIIAEGIPEALTR TIAIIAEGIPEALTRKLIKKADQKGVTIIG R T I T R K 3 1 0 0 0 0 2 1 0 4 1 0 0 0 1 0 2 0 0 0 0 0 15 0 1566.8981 A0A024R1Y2;A0A024R1T9;Q4LE36;P53396;Q8N9C4 A0A024R1Y2 583 597 ACLY;ACLY variant protein ATP-citrate synthase yes no 2 0.049266 51.013 1 0.85337 1.1525 NaN 1 Median 0.85337 1.1525 NaN 1 0 Median NaN NaN NaN 0 0 Median 4043000 1869200 2173800 4043000 1869200 2173800 0 0 0 11852 69 12168 42582 63925 63925 0 TIAPQNAPR NSPIHHIPSRRSPAKTIAPQNAPRDESRGR RRSPAKTIAPQNAPRDESRGRSSFYPDGGD K T I P R D 2 1 1 0 0 1 0 0 0 1 0 0 0 0 2 0 1 0 0 0 0 0 9 0 966.52468 Q6DCA8;E9PK09;E9PQN2;E9PKI6;E9PK91;Q9NYF8;E9PJA7;H0YF00 Q6DCA8 304 312 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2 0.0018503 91.041 2 0.49553 0.65795 13.028 2 Median 0.49553 0.65795 13.028 2 0 Median NaN NaN NaN 0 0 Median 34080000 21449000 12631000 34080000 21449000 12631000 0 0 0 11853 1036 12169 42583;42584 63926;63927 63927 2 TIAQDYGVLK GLGPMNIPLVSDPKRTIAQDYGVLKADEGI SDPKRTIAQDYGVLKADEGISFRGLFIIDD R T I L K A 1 0 0 1 0 1 0 1 0 1 1 1 0 0 0 0 1 0 1 1 0 0 10 0 1106.5972 A0A0A0MSI0;Q06830;B2R4P2 A0A0A0MSI0 111 120 PRDX1 Peroxiredoxin-1 yes no 2 0.012504 51.854 1 0.76212 0.96204 NaN 1 Median 0.76212 0.96204 NaN 1 0 Median NaN NaN NaN 0 0 Median 10190000 4758600 5431500 10190000 4758600 5431500 0 0 0 11854 397 12170 42585 63928 63928 1 TICAEFAILR SDDNVFVGAPTGSGKTICAEFAILRMLLQS TGSGKTICAEFAILRMLLQSSEGRCVYITP K T I L R M 2 1 0 0 1 0 1 0 0 2 1 0 0 1 0 0 1 0 0 0 0 0 10 0 1192.6274 O75643;A4FU77 O75643 1357 1366 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.00010905 114.28 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6091100 6091100 0 6091100 6091100 0 0 0 0 11855 1206 12171 42586;42587 63929;63930 63930 2 TICSHVQNMIK VDKWWGNRKELATVRTICSHVQNMIKGVTL ATVRTICSHVQNMIKGVTLGFRYKMRSVYA R T I I K G 0 0 1 0 1 1 0 0 1 2 0 1 1 0 0 1 1 0 0 1 0 0 11 0 1329.6533 Q53Z07;P32969;H0Y9V9;D6RAN4;E7ESE0;B4E1M5;B4DLV8;Q2NKY6;H0Y9R4 Q53Z07 72 82 RPL9 60S ribosomal protein L9 yes no 2;3 1.1029E-05 117.71 10 2 0.67445 0.86106 23.663 9 Median 0.73888 0.96943 15.937 7 0 Median 0.44052 0.61348 1.645 2 0 Median 63646000 40708000 22938000 54195000 34263000 19931000 9451000 6444500 3006500 11856 1314 12172;12173 42588;42589;42590;42591;42592;42593;42594;42595;42596;42597;42598;42599 63931;63932;63933;63934;63935;63936;63937;63938;63939;63940;63941;63942;63943;63944;63945 63940 549 15 TIDGILLLIER LFRTHIISDKMVQSKTIDGILLLIERERSG VQSKTIDGILLLIERERSGEAVDRSLLRSL K T I E R E 0 1 0 1 0 0 1 1 0 3 3 0 0 0 0 0 1 0 0 0 0 0 11 0 1254.7547 Q13619;A0A0A0MR50;B2RBV7;K4DI93;Q13620;A6NE76 Q13619 192 202 CUL4A;CUL4B Cullin-4A;Cullin-4B yes no 2 1.0001E-08 151.83 5 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2958200 2958200 0 2958200 2958200 0 0 0 0 11857 1474 12174 42600;42601;42602;42603;42604 63946;63947;63948;63949;63950 63947 5 TIDGQQTIIACIESHQFQPK VKDHYSNGFCTVYAKTIDGQQTIIACIESH QTIIACIESHQFQPKNFWNGRWRSEWKFTI K T I P K N 1 0 0 1 1 4 1 1 1 4 0 1 0 1 1 1 2 0 0 0 0 0 20 0 2313.1423 A8K0T9;A0A024R0E5;P52907 A8K0T9 147 166 CAPZA1 F-actin-capping protein subunit alpha-1 yes no 3 2.0999E-05 120.9 4 0.86858 1.0804 3.5068 4 Median 0.86858 1.0804 3.5068 4 0 Median NaN NaN NaN 0 0 Median 75022000 40037000 34985000 75022000 40037000 34985000 0 0 0 11858 32 12175 42605;42606;42607;42608 63951;63952;63953;63954;63955;63956 63951 6 TIEAEAAHGTVTR SLGLMTSVLVCPDGKTIEAEAAHGTVTRHY GKTIEAEAAHGTVTRHYREHQKGRPTSTNP K T I T R H 3 1 0 0 0 0 2 1 1 1 0 0 0 0 0 0 3 0 0 1 0 0 13 0 1354.6841 H0YL11;B4DSZ6;Q13584;Q53GL5;P48735 H0YL11 232 244 IDH2 Isocitrate dehydrogenase [NADP];Isocitrate dehydrogenase [NADP], mitochondrial yes no 2 0.00058163 82.494 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1605100 1605100 0 1605100 1605100 0 0 0 0 11859 855 12176 42609;42610;42611 63957;63958;63959 63959 3 TIEESEETLK SSYHKQQEELDALKKTIEESEETLKNTKEI DALKKTIEESEETLKNTKEIQRKAEEKYEV K T I L K N 0 0 0 0 0 0 4 0 0 1 1 1 0 0 0 1 2 0 0 0 0 0 10 0 1177.5714 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;B3KM27 A0A024R158 751 760 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 4.6096E-05 113.62 6 2 0.67726 0.96456 8.9769 5 Median 0.73619 0.94132 5.1031 3 0 Median 0.67314 1.0746 2.1223 2 0 Median 353050000 202080000 150970000 217090000 121540000 95549000 135950000 80531000 55424000 11860 50 12177 42612;42613;42614;42615;42616;42617;42618;42619 63960;63961;63962;63963;63964;63965;63966;63967;63968;63969;63970;63971;63972;63973 63969 14 TIEQNINNLNVSEADR TTKKAVKPKKKHLHRTIEQNINNLNVSEAD IEQNINNLNVSEADRKCEIDPMFQKTAASF R T I D R K 1 1 4 1 0 1 2 0 0 2 1 0 0 0 0 1 1 0 0 1 0 0 16 0 1828.8915 Q15003;B4DRG7;E9PHA2;A8K4T8;C9J470 Q15003 222 237 NCAPH Condensin complex subunit 2 yes no 2 3.1379E-42 203.74 5 1 0.69615 0.96763 18.587 5 Median 0.76343 1.0581 16.205 4 0 Median 0.54195 0.82499 NaN 1 0 Median 45697000 27080000 18617000 28176000 16678000 11498000 17522000 10403000 7119000 11861 1500 12178 42620;42621;42622;42623;42624;42625 63974;63975;63976;63977;63978;63979;63980;63981;63982;63983 63977 10 TIEQNINNLNVSEADRK TTKKAVKPKKKHLHRTIEQNINNLNVSEAD EQNINNLNVSEADRKCEIDPMFQKTAASFD R T I R K C 1 1 4 1 0 1 2 0 0 2 1 1 0 0 0 1 1 0 0 1 0 0 17 1 1956.9865 Q15003;B4DRG7;E9PHA2;A8K4T8;C9J470 Q15003 222 238 NCAPH Condensin complex subunit 2 yes no 2;3 3.3988E-43 203.27 6 2 0.66774 0.94165 6.3926 7 Median 0.68864 0.9525 7.4742 5 0 Median 0.5309 0.91766 3.6498 2 0 Median 349560000 236510000 113050000 224110000 159010000 65100000 125450000 77500000 47950000 11862 1500 12179 42626;42627;42628;42629;42630;42631;42632;42633 63984;63985;63986;63987;63988;63989;63990;63991;63992;63993;63994;63995;63996;63997;63998;63999;64000;64001;64002 63989 19 TIFTGHTAVVEDVSWHLLHESLFGSVADDQK DISAVPKEGKVVDAKTIFTGHTAVVEDVSW LLHESLFGSVADDQKLMIWDTRSNNTSKPS K T I Q K L 2 0 0 3 0 1 2 2 3 1 3 1 0 2 0 3 3 1 0 4 0 0 31 0 3437.6892 Q09028 Q09028 221 251 RBBP4 Histone-binding protein RBBP4 yes yes 4 3.4309E-05 37.678 1 0.9641 1.4649 NaN 1 Median NaN NaN NaN 0 0 Median 0.9641 1.4649 NaN 1 0 Median 24192000 12245000 11947000 0 0 0 24192000 12245000 11947000 11863 1452 12180 42634 64003 64003 1 TIGGGDDSFNTFFSETGAGK ______________________________ DDSFNTFFSETGAGKHVPRAVFVDLEPTVI K T I G K H 1 0 1 2 0 0 1 5 0 1 0 1 0 3 0 2 3 0 0 0 0 0 20 0 2006.8858 B3KT06;P68363;B3KPS3;A8JZY9;F8VVB9;B4DN58;F8VRZ4;F8VS66;F8VX09;F8VWV9;F8VRK0;F8VXZ7;F8W0F6;Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;Q8N532;Q71U36;Q1ZYQ1;Q13748;Q6PEY2;F8VQQ4 B3KT06 6 25 TUBA1B;TUBA1A;TUBA1C;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 2 9.9566E-73 227.91 5 2 0.40489 0.53289 124.21 6 Median 0.40125 0.52563 1.3379 4 0 Median 3.707 5.8503 0.48625 2 0 Median 1407000000 786540000 620490000 988940000 700080000 288860000 418090000 86455000 331630000 11864 777;1607;1056 12181 42635;42636;42637;42638;42639;42640;42641 64004;64005;64006;64007;64008;64009;64010;64011;64012;64013;64014;64015;64016;64017;64018;64019;64020;64021;64022;64023;64024;64025 64005 22 TIGGGDDSFTTFFCETGAGK LEHGIQPDGQMPSDKTIGGGDDSFTTFFCE DDSFTTFFCETGAGKHVPRAVFVDLEPTVI K T I G K H 1 0 0 2 1 0 1 5 0 1 0 1 0 3 0 1 4 0 0 0 0 0 20 0 2066.8891 P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2 P68366 41 60 TUBA4A Tubulin alpha-4A chain yes no 2 1.4666E-15 130.24 4 0.41694 0.53085 6.144 4 Median 0.41694 0.53085 6.144 4 0 Median NaN NaN NaN 0 0 Median 33017000 23018000 9999300 33017000 23018000 9999300 0 0 0 11865 1422 12182 42642;42643;42644;42645 64026;64027;64028;64029;64030;64031;64032 64026 7 TIGISVDPR LEELRVAGIHKKVARTIGISVDPRRRNKST HKKVARTIGISVDPRRRNKSTESLQANVQR R T I P R R 0 1 0 1 0 0 0 1 0 2 0 0 0 0 1 1 1 0 0 1 0 0 9 0 956.5291 Q6NZ55;A8K4C8;P26373;J3QSB4 Q6NZ55 93 101 RPL13 60S ribosomal protein L13 yes no 2 0.0091082 93.143 3 2 0.7265 1.008 9.6059 5 Median 0.73665 1.01 2.4352 3 0 Median 0.5325 0.86234 2.4355 2 0 Median 840870000 494570000 346300000 721820000 418380000 303440000 119050000 76194000 42860000 11866 604 12183 42646;42647;42648;42649;42650 64033;64034;64035;64036;64037;64038;64039;64040;64041 64033 9 TIGTGLVTNTLAMTEEEK ILEKGQRFTLRDGNRTIGTGLVTNTLAMTE TGLVTNTLAMTEEEKNIKWG__________ R T I E K N 1 0 1 0 0 0 3 2 0 1 2 1 1 0 0 0 5 0 0 1 0 0 18 0 1906.9558 P49411 P49411 430 447 TUFM Elongation factor Tu, mitochondrial yes yes 2 0.0096142 40.552 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20166000 0 20166000 0 0 0 20166000 0 20166000 11867 1350 12184 42651 64042 64042 588 1 TIHTDVLFGVVK LRKYSCVILDEAHERTIHTDVLFGVVKAAQ HERTIHTDVLFGVVKAAQKRRKELGKLPLK R T I V K A 0 0 0 1 0 0 0 1 1 1 1 1 0 1 0 0 2 0 0 3 0 0 12 0 1327.75 B4DIS6;Q9H6R0;I3L1L6 B4DIS6 259 270 DHX33 Putative ATP-dependent RNA helicase DHX33 yes no 3 0.020051 67.385 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11868 811 12185 42652 64043 64043 1 TIIFCETK VIGDVIRVYSGHQGRTIIFCETKKEAQELS YSGHQGRTIIFCETKKEAQELSQNSAIKQD R T I T K K 0 0 0 0 1 0 1 0 0 2 0 1 0 1 0 0 2 0 0 0 0 0 8 0 1010.5107 Q9NR30 Q9NR30 441 448 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.015955 73.248 3 0.66709 0.84852 3.0573 3 Median 0.66709 0.84852 3.0573 3 0 Median NaN NaN NaN 0 0 Median 22027000 12380000 9646500 22027000 12380000 9646500 0 0 0 11869 1756 12186 42653;42654;42655 64044;64045;64046 64046 3 TIIFCETKK VIGDVIRVYSGHQGRTIIFCETKKEAQELS SGHQGRTIIFCETKKEAQELSQNSAIKQDA R T I K K E 0 0 0 0 1 0 1 0 0 2 0 2 0 1 0 0 2 0 0 0 0 0 9 1 1138.6056 Q9NR30 Q9NR30 441 449 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 0.0051945 75.825 2 0.5643 0.70858 NaN 1 Median 0.5643 0.70858 NaN 1 0 Median NaN NaN NaN 0 0 Median 22490000 18831000 3659000 22490000 18831000 3659000 0 0 0 11870 1756 12187 42656;42657 64047;64048 64048 2 TIIGQQGDQSCANK ENLLWVDKYKPTSLKTIIGQQGDQSCANKL KTIIGQQGDQSCANKLLRWLRNWQKSSSED K T I N K L 1 0 1 1 1 3 0 2 0 2 0 1 0 0 0 1 1 0 0 0 0 0 14 0 1518.7097 P35251;Q14756 P35251 597 610 RFC1;LLDBP Replication factor C subunit 1 yes no 2 0.0017081 89.561 2 0.45775 0.59454 33.383 2 Median 0.45775 0.59454 33.383 2 0 Median NaN NaN NaN 0 0 Median 5349200 3809500 1539700 5349200 3809500 1539700 0 0 0 11871 1318 12188 42658;42659 64049;64050 64049 2 TIIITCSFTPGSCTLTAYK HAKIMADNPSWDGEKTIIITCSFTPGSCTL TCSFTPGSCTLTAYKLTPSGYEWGRQNTDK K T I Y K L 1 0 0 0 2 0 0 1 0 3 1 1 0 1 1 2 5 0 1 0 0 0 19 0 2133.0486 Q6P2Q9;B4DK16;Q53GM6 Q6P2Q9 2211 2229 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 3.7527E-31 171.73 4 0.62565 0.78956 11.512 4 Median 0.62565 0.78956 11.512 4 0 Median NaN NaN NaN 0 0 Median 36512000 20859000 15653000 36512000 20859000 15653000 0 0 0 11872 1592 12189 42660;42661;42662;42663 64051;64052;64053;64054;64055;64056;64057;64058 64053 8 TIIQNPTDQQK MLSHQLKQHVIDGEKTIIQNPTDQQKKDHE DGEKTIIQNPTDQQKKDHEKAEFEVHEVYA K T I Q K K 0 0 1 1 0 3 0 0 0 2 0 1 0 0 1 0 2 0 0 0 0 0 11 0 1284.6674 A8K6Y1;Q6PIN5;A0A024RB85;Q9UQ80;Q05D08;F8VR77 A8K6Y1 200 210 PA2G4 Proliferation-associated protein 2G4 yes no 2 0.00018674 126.07 3 2 0.63968 0.81097 96.059 4 Median 0.61587 0.7833 4.0216 3 0 Median 3.8009 5.4674 NaN 1 0 Median 24952000 12282000 12669000 17159000 11396000 5762700 7792500 886040 6906500 11873 264 12190 42664;42665;42666;42667;42668 64059;64060;64061;64062;64063;64064;64065;64066 64061 8 TIKMHEKR LYHKQRHAEKIQMKKTIKMHEKRNTKQKND EKIQMKKTIKMHEKRNTKQKNDEKTPQGAV K T I K R N 0 1 0 0 0 0 1 0 1 1 0 2 1 0 0 0 1 0 0 0 0 0 8 2 1041.5753 Q5J7U2;O95478;A0A0A0MQZ6 Q5J7U2 64 71 CDK105;NSA2 Ribosome biogenesis protein NSA2 homolog yes no 2 0.026617 43 1 1.0731 1.2618 NaN 1 Median 1.0731 1.2618 NaN 1 0 Median NaN NaN NaN 0 0 Median 5893200 2514000 3379200 5893200 2514000 3379200 0 0 0 11874 1221 12191 42669 64067 64067 0 TILEEEITPTIQK QKTIEKKEAKLKEIKTILEEEITPTIQKLK IKTILEEEITPTIQKLKEERSSYLEYQKVM K T I Q K L 0 0 0 0 0 1 3 0 0 3 1 1 0 0 1 0 3 0 0 0 0 0 13 0 1513.8239 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q05D74;Q6P712;Q7Z2X1;Q5T821 A0A024R158 197 209 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 2.5525E-52 238.51 4 2 0.71362 0.95378 4.9395 6 Median 0.72658 0.93545 2.2226 4 0 Median 0.64654 1.0243 2.3251 2 0 Median 475710000 281350000 194360000 290340000 171070000 119270000 185370000 110280000 75098000 11875 50 12192 42670;42671;42672;42673;42674;42675 64068;64069;64070;64071;64072;64073;64074;64075;64076;64077;64078;64079;64080;64081;64082;64083;64084;64085;64086 64068 19 TILENSVK KTFITKANASAIPGKTILENSVKHSKALNT ASAIPGKTILENSVKHSKALNTLSSPGQSS K T I V K H 0 0 1 0 0 0 1 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 8 0 902.5073 Q8WWQ0;Q9NWP3 Q8WWQ0 1543 1550 PHIP PH-interacting protein yes no 2 0.010275 101.28 2 0.92979 1.1586 9.2115 2 Median 0.92979 1.1586 9.2115 2 0 Median NaN NaN NaN 0 0 Median 63786000 34765000 29021000 63786000 34765000 29021000 0 0 0 11876 1668 12193 42676;42677 64087;64088 64087 2 TILSNQTVDIPENVDITLK ______________________________ NQTVDIPENVDITLKGRTVIVKGPRGTLRR K T I L K G 0 0 2 2 0 1 1 0 0 3 2 1 0 0 1 1 3 0 0 2 0 0 19 0 2112.1314 Q53Z07;P32969;D6RAN4;E7ESE0;B4E1M5;B4DLV8 Q53Z07 3 21 RPL9 60S ribosomal protein L9 yes no 2 1.1927E-143 293.53 8 1 0.74621 0.98744 8.8583 8 Median 0.75213 0.99411 9.3224 7 0 Median 0.59464 0.95217 NaN 1 0 Median 2045800000 1175200000 870550000 1811300000 1026700000 784660000 234480000 148580000 85894000 11877 1314 12194 42678;42679;42680;42681;42682;42683;42684;42685;42686 64089;64090;64091;64092;64093;64094;64095;64096;64097;64098;64099;64100;64101;64102;64103;64104 64093 15 TINEVENQILTR HIRVGWEQLLTTIARTINEVENQILTRDAK IARTINEVENQILTRDAKGISQEQMQEFRA R T I T R D 0 1 2 0 0 1 2 0 0 2 1 0 0 0 0 0 2 0 0 1 0 0 12 0 1428.7573 A0A0S2Z3G9;O43707;Q96BG6;F5GXS2;H7C144;A0A0S2Z3X3;A0A0S2Z3C0;H9KV75;B7Z565;A0A024R694;P12814;H0YJ11;H7C5W8;B3KUX9;B4DFY0;B7Z2W3;Q5ZEZ4;H0YJW3;A1L0V1 A0A0S2Z3G9 746 757 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 no no 2 0.02943 65.842 1 0.86145 1.2017 NaN 1 Median 0.86145 1.2017 NaN 1 0 Median NaN NaN NaN 0 0 Median 4458300 2177600 2280700 4458300 2177600 2280700 0 0 0 11878 451;157 12195 42687 64105;64106 64105 2 TIPDVFPHLPLIAITR ______________________________ IPDVFPHLPLIAITRNPVFPRFIKIIEVKN M T I T R N 1 1 0 1 0 0 0 0 1 3 2 0 0 1 3 0 2 0 0 1 0 0 16 0 1802.0454 K7EJE8;K7EKE6;B3KU28 K7EJE8 2 17 LONP1 Lon protease homolog, mitochondrial yes no 3 0.0018363 46.156 3 0.59859 0.79397 18.914 3 Median 0.59859 0.79397 18.914 3 0 Median NaN NaN NaN 0 0 Median 6502300 4087300 2415000 6502300 4087300 2415000 0 0 0 11879 780 12196 42688;42689;42690 64107;64108;64109;64110 64110 4 TIPLTDNTVIEEHLGK RELILKRGQAKVKNKTIPLTDNTVIEEHLG IPLTDNTVIEEHLGKFGVICLEDLIHEIAF K T I G K F 0 0 1 1 0 0 2 1 1 2 2 1 0 0 1 0 3 0 0 1 0 0 16 0 1778.9414 A0A024RD36;Q6DKI1;B3KMP5;A8K5J5 A0A024RD36 173 188 RPL7L1 60S ribosomal protein L7-like 1 yes no 3 1.5368E-09 113.65 5 2 0.87958 1.1 23.863 6 Median 0.91483 1.1483 4.982 4 0 Median 0.4803 0.72701 8.3103 2 0 Median 217580000 120020000 97564000 183820000 97358000 86458000 33765000 22659000 11106000 11880 311 12197 42691;42692;42693;42694;42695;42696;42697 64111;64112;64113;64114;64115;64116;64117;64118;64119;64120;64121 64117 11 TIPNDPGFVVTLSNR FRDLYHRVDVIFCDKTIPNDPGFVVTLSNR TIPNDPGFVVTLSNRMNYFQVAKTVAQRLN K T I N R M 0 1 2 1 0 0 0 1 0 1 1 0 0 1 2 1 2 0 0 2 0 0 15 0 1628.8522 Q6U8A4;Q93009;B7Z855;H3BND8;B7Z7T5 Q6U8A4 812 826 USP7 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 7 yes no 2 5.5148E-05 98.105 4 1 0.4278 0.59218 38.643 3 Median 0.3877 0.52457 17.145 2 0 Median 0.71238 0.99039 NaN 1 0 Median 36253000 27234000 9019400 27117000 21713000 5404300 9135700 5520600 3615100 11881 1600 12198 42698;42699;42700;42701;42702 64122;64123;64124;64125;64126;64127;64128;64129 64128 8 TIPSWATLSASQLAR DEKDQSKEKEKKVKKTIPSWATLSASQLAR TIPSWATLSASQLARAQKQTPMASSPRPKM K T I A R A 3 1 0 0 0 1 0 0 0 1 2 0 0 0 1 3 2 1 0 0 0 0 15 0 1600.8573 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 132 146 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 1.6515E-05 74.76 2 0.38601 0.62294 5.8765 2 Median NaN NaN NaN 0 0 Median 0.38601 0.62294 5.8765 2 0 Median 105860000 76131000 29725000 0 0 0 105860000 76131000 29725000 11882 1565 12199 42703;42704 64130;64131;64132;64133 64133 4 TIPVILDGK IMKKGYKVPTPIQRKTIPVILDGKDVVAMA TPIQRKTIPVILDGKDVVAMARTGSGKTAC K T I G K D 0 0 0 1 0 0 0 1 0 2 1 1 0 0 1 0 1 0 0 1 0 0 9 0 954.57498 Q8TDD1;F8VRX4 Q8TDD1 126 134 DDX54 ATP-dependent RNA helicase DDX54 yes no 2 0.012958 84.743 4 0.9802 1.2419 6.3275 4 Linear 0.9802 1.2419 6.3275 4 0 Linear NaN NaN NaN 0 0 Median 41098000 22889000 18209000 41098000 22889000 18209000 0 0 0 11883 1658 12200 42705;42706;42707;42708 64134;64135;64136;64137 64137 4 TIQAHEGFVR GEVRIWNLTQRNCIRTIQAHEGFVRGICTR RNCIRTIQAHEGFVRGICTRFCGTSFFTVG R T I V R G 1 1 0 0 0 1 1 1 1 1 0 0 0 1 0 0 1 0 0 1 0 0 10 0 1156.5989 A0A087WT20;Q9NV06;B3KME9 A0A087WT20 256 265 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2;3 0.0019288 76.143 4 2 1.2312 1.6491 40.648 5 Median 1.5456 2.0809 38.091 4 0 Median 0.77085 1.1702 NaN 1 0 Median 136920000 57560000 79357000 114100000 47166000 66939000 22812000 10394000 12418000 11884 331 12201 42709;42710;42711;42712;42713;42714 64138;64139;64140;64141;64142;64143;64144 64139 7 TIQTPIGSTWNTQR RVLPYPFTHHWQFERTIQTPIGSTWNTQRA RTIQTPIGSTWNTQRAFQKLTTPKVVTKPG R T I Q R A 0 1 1 0 0 2 0 1 0 2 0 0 0 0 1 1 4 1 0 0 0 0 14 0 1601.8162 Q9BVJ6;B4E343;Q08E77;A0A024RDV0;Q5TAP6 Q9BVJ6 698 711 UTP14A;UTP14C;hCG_1811699 U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C yes no 2 3.3642E-05 93.345 2 0.66169 0.93199 3.8395 2 Median NaN NaN NaN 0 0 Median 0.66169 0.93199 3.8395 2 0 Median 21778000 12657000 9121000 0 0 0 21778000 12657000 9121000 11885 1719 12202 42715;42716 64145;64146;64147;64148 64148 4 TIRYPDPLIK VGTKGIPHLVTHDARTIRYPDPLIKVNDTI THDARTIRYPDPLIKVNDTIQIDLETGKIT R T I I K V 0 1 0 1 0 0 0 0 0 2 1 1 0 0 2 0 1 0 1 0 0 0 10 1 1214.7023 B2R491;P62701;Q96IR1;Q53HV1;Q8TD47 B2R491 146 155 RPS4X;RPS4Y2 40S ribosomal protein S4;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 yes no 2;3 0.0008893 80.737 6 1 0.80474 1.0568 14.344 7 Median 0.80533 1.0617 3.6493 6 0 Median 0.43864 0.7315 NaN 1 0 Median 623280000 357680000 265600000 577350000 325640000 251710000 45928000 32034000 13894000 11886 681 12203 42717;42718;42719;42720;42721;42722;42723 64149;64150;64151;64152;64153;64154;64155;64156;64157;64158;64159 64152 11 TISFREEQEK TEIEKARAVAERALKTISFREEQEKLNVWV ERALKTISFREEQEKLNVWVALLNLENMYG K T I E K L 0 1 0 0 0 1 3 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 10 1 1265.6252 Q14690 Q14690 1648 1657 PDCD11 Protein RRP5 homolog yes yes 2 9.8053E-05 123.63 4 1.0582 1.3741 23.587 3 Median 1.0582 1.3741 23.587 3 0 Median NaN NaN NaN 0 0 Median 30105000 14079000 16026000 30105000 14079000 16026000 0 0 0 11887 1494 12204 42724;42725;42726;42727 64160;64161;64162;64163 64163 4 TISHVIIGLK LTPCETENPMGGYGKTISHVIIGLKTAKGT GGYGKTISHVIIGLKTAKGTKQLKLDPSIF K T I L K T 0 0 0 0 0 0 0 1 1 3 1 1 0 0 0 1 1 0 0 1 0 0 10 0 1079.6703 B5BUB1;Q9Y265;E7ETR0;B3KRS7 B5BUB1 153 162 RUVBL1 RuvB-like 1 yes no 3 0.0026918 53.756 1 0.5261 0.66835 NaN 1 Median 0.5261 0.66835 NaN 1 0 Median NaN NaN NaN 0 0 Median 12733000 9060700 3672300 12733000 9060700 3672300 0 0 0 11888 896 12205 42728 64164 64164 1 TISPAESTALLQGR SWITIPRKAGSLKQRTISPAESTALLQGRK RTISPAESTALLQGRKSREKHHNILPKTLA R T I G R K 2 1 0 0 0 1 1 1 0 1 2 0 0 0 1 2 2 0 0 0 0 0 14 0 1442.7729 Q03188;H0Y8J2 Q03188 331 344 CENPC Centromere protein C yes no 2 0.00014275 70.488 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8983800 8983800 0 0 0 0 8983800 8983800 0 11889 1439 12206 42729;42730 64165;64166 64166 2 TISQEFLTPGKLEINFEELLK RRNMVVDDDSPEMYKTISQEFLTPGKLEIN LTPGKLEINFEELLKQKMEEEKRRTEEERK K T I L K Q 0 0 1 0 0 1 4 1 0 2 4 2 0 2 1 1 2 0 0 0 0 0 21 1 2448.3152 B4DDI0;H7BXY5;D3DQ79;Q0ZGT2;E7ETM8;E7EUA0;B4DUN9 B4DDI0 76 96 NEXN Nexilin yes no 3 0.0018407 53.768 1 1.6293 1.9653 NaN 1 Median 1.6293 1.9653 NaN 1 0 Median NaN NaN NaN 0 0 Median 1620500 535370 1085100 1620500 535370 1085100 0 0 0 11890 794 12207 42731 64167;64168 64167 2 TISSYTAFSR EPQMVLFNLYDDWLKTISSYTAFSRLILIL DDWLKTISSYTAFSRLILILRALHVNNDRA K T I S R L 1 1 0 0 0 0 0 0 0 1 0 0 0 1 0 3 2 0 1 0 0 0 10 0 1131.556 Q6P2Q9;B4DK16;Q6JH02;Q6JH03 Q6P2Q9 1926 1935 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.014081 89.029 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4010500 1944600 2065900 4010500 1944600 2065900 0 0 0 11891 1592 12208 42732;42733 64169;64170 64169 2 TISTSDPAEVLVK TSKTRPKQEKAFSLKTISTSDPAEVLVKNS LKTISTSDPAEVLVKNSQPIKTLPPATSTE K T I V K N 1 0 0 1 0 0 1 0 0 1 1 1 0 0 1 2 2 0 0 2 0 0 13 0 1358.7293 E5RJU9;A0A024R9D2;Q86UE4 E5RJU9 436 448 MTDH Protein LYRIC yes no 2 0.046925 28.956 1 0.69331 0.89032 NaN 1 Median 0.69331 0.89032 NaN 1 0 Median NaN NaN NaN 0 0 Median 4479600 2458100 2021500 4479600 2458100 2021500 0 0 0 11892 218 12209 42734 64171 64171 1 TITGNSAAVITPFK GTPKGEAVLGTHKLKTITGNSAAVITPFKL KTITGNSAAVITPFKLTTEATQTPVSNKKP K T I F K L 2 0 1 0 0 0 0 1 0 2 0 1 0 1 1 1 3 0 0 1 0 0 14 0 1418.7769 Q9BXS6;A8K4B4 Q9BXS6 328 341 NUSAP1 Nucleolar and spindle-associated protein 1 yes no 2 8.5264E-05 71.555 1 0.80146 1.0222 NaN 1 Median 0.80146 1.0222 NaN 1 0 Median NaN NaN NaN 0 0 Median 6692800 3475400 3217500 6692800 3475400 3217500 0 0 0 11893 1723 12210 42735 64172 64172 1 TITLEVEPSDTIENVK ______________________________ ITLEVEPSDTIENVKAKIQDKEGIPPDQQR K T I V K A 0 0 1 1 0 0 3 0 0 2 1 1 0 0 1 1 3 0 0 2 0 0 16 0 1786.92 Q5RKT7;B2RDW1;P62979;J3QS39;J3QTR3;F5H6Q2;Q3MIH3;F5GYU3;F5H2Z3;F5H265;Q5UGI3;B4DV12;F5H388;F5H747;F5GXK7;J3QKN0;Q5U5U6;Q5PY61;Q96C32;Q96MH4;L8B4I8;L8B196;L8B4R0;A8K674;L8B4Z6;L8B4M0;L8B4J3;P62987;P0CG47;P0CG48;M0R1V7;Q49A90;Q9UFQ0;Q96H31;Q66K58;Q59EM9;J3QSA3;F5GZ39 Q5RKT7 12 27 RPS27A;HEL112;UBB;UBC;UBA52;UbC;DKFZp434K0435 Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 2 1.6866E-90 230.81 8 8 0.71471 1.0001 14.55 13 Median 0.73951 0.95796 4.9869 5 0 Median 0.69075 1.0953 14.926 8 0 Median 4852300000 2864800000 1987500000 1369800000 804430000 565350000 3482500000 2060400000 1422100000 11894 742 12211 42736;42737;42738;42739;42740;42741;42742;42743;42744;42745;42746;42747;42748;42749;42750;42751 64173;64174;64175;64176;64177;64178;64179;64180;64181;64182;64183;64184;64185;64186;64187;64188;64189;64190;64191;64192;64193;64194;64195;64196;64197;64198;64199;64200;64201;64202;64203;64204;64205;64206;64207;64208;64209;64210 64208 38 TITQIEEFSDVNEGEK VDSEDEKDPEWLREKTITQIEEFSDVNEGE ITQIEEFSDVNEGEKEVMKLWNLHVMKHGF K T I E K E 0 0 1 1 0 1 4 1 0 2 0 1 0 1 0 1 2 0 0 1 0 0 16 0 1837.8582 J3QQW9;Q15022;A8K1U9 J3QQW9 573 588 SUZ12 Polycomb protein SUZ12 yes no 2 1.0491E-77 232.5 7 1 0.83573 1.0882 6.8117 4 Median 0.85402 1.0796 1.7056 3 0 Median 0.81382 1.2327 NaN 1 0 Median 44624000 23278000 21347000 30392000 14844000 15548000 14232000 8433600 5798700 11895 1143 12212 42752;42753;42754;42755;42756;42757;42758;42759 64211;64212;64213;64214;64215;64216;64217;64218;64219;64220;64221;64222 64216 12 TITTAYYR IKLQIWDTAGQERFRTITTAYYRGAMGIML AGQERFRTITTAYYRGAMGIMLVYDITNEK R T I Y R G 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 3 0 2 0 0 0 8 0 987.50255 A0A024R7I3;P61006;H0YMN7;Q59EP4;H0YNE9;B4DMS1;Q92930;M0R257;B2R8W8;A0A024R7G2;A0A024R7I7;B4DE50;O95716;P20336;Q96E17;D3DV69;A0A024RB27;Q504R6;P51153 A0A024R7I3 72 79 RAB8A;RAB8B;RAB3A;RAB3D;RAB3C;hCG_1996054;hCG_24991;RAB13 Ras-related protein Rab-8A;Ras-related protein Rab-8B;Ras-related protein Rab-3D;Ras-related protein Rab-3A;Ras-related protein Rab-3C;Ras-related protein Rab-13 no no 2 0.011546 68.915 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6371700 6371700 0 6371700 6371700 0 0 0 0 11896 178;258 12213 42760 64223 64223 1 TITYQAVPSEVPNEEPK QVSWQPFLDGIFPAKTITYQAVPSEVPNEE TYQAVPSEVPNEEPKVATAYRPPALRNKPI K T I P K V 1 0 1 0 0 1 3 0 0 1 0 1 0 0 3 1 2 0 1 2 0 0 17 0 1900.9418 F8WAE5;Q9BY44;H7C5R5 F8WAE5 420 436 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 2 0.011042 81.709 2 0.71153 0.90171 NaN 1 Median 0.71153 0.90171 NaN 1 0 Median NaN NaN NaN 0 0 Median 2195800 1718900 476890 2195800 1718900 476890 0 0 0 11897 1072 12214 42761;42762 64224;64225 64224 1 TIVEELLADSEFR ADFYHSRIPKKQRKRTIVEELLADSEFRRY KRTIVEELLADSEFRRYNRRKYSEIMAEKA R T I F R R 1 1 0 1 0 0 3 0 0 1 2 0 0 1 0 1 1 0 0 1 0 0 13 0 1520.7722 Q5QJE6 Q5QJE6 713 725 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 2 3.1686E-08 113.67 3 2 0.76471 1.0747 3.2122 4 Median 0.80771 1.0736 2.4857 2 0 Median 0.73406 1.0924 4.6634 2 0 Median 48782000 27305000 21477000 17672000 8745400 8926500 31110000 18560000 12550000 11898 1561 12215 42763;42764;42765;42766;42767 64226;64227;64228;64229;64230 64227 4 TIVEELLADSEFRR ADFYHSRIPKKQRKRTIVEELLADSEFRRY RTIVEELLADSEFRRYNRRKYSEIMAEKAA R T I R R Y 1 2 0 1 0 0 3 0 0 1 2 0 0 1 0 1 1 0 0 1 0 0 14 1 1676.8733 Q5QJE6 Q5QJE6 713 726 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 2;3 0.00054966 85.973 4 1.0268 1.3992 7.6417 3 Plateau 1.0268 1.3992 7.6417 3 0 Plateau NaN NaN NaN 0 0 Median 45670000 21717000 23953000 45670000 21717000 23953000 0 0 0 11899 1561 12216 42768;42769;42770;42771 64231;64232;64233;64234;64235 64232 5 TIVFSENHK SKSQRRKSLKLKNDKTIVFSENHKNDMDIT KLKNDKTIVFSENHKNDMDITQSCMVEIDN K T I H K N 0 0 1 0 0 0 1 0 1 1 0 1 0 1 0 1 1 0 0 1 0 0 9 0 1073.5506 Q8NG31;H0YCZ2;E9PPJ1 Q8NG31 1101 1109 CASC5 Protein CASC5 yes no 2 0.026851 47.574 1 0.20311 0.28 NaN 1 Median NaN NaN NaN 0 0 Median 0.20311 0.28 NaN 1 0 Median 5280200 4277500 1002600 0 0 0 5280200 4277500 1002600 11900 1656 12217 42772 64236 64236 1 TIVFVETK LIRLMEEIMSEKENKTIVFVETKRRCDELT MSEKENKTIVFVETKRRCDELTRKMRRDGW K T I T K R 0 0 0 0 0 0 1 0 0 1 0 1 0 1 0 0 2 0 0 2 0 0 8 0 935.53278 B4DN41;J3KTA4;B5BUE6;P17844;B4DNG2;Q7Z2V5;Q59E92;J3QSF1 B4DN41 333 340 DDX5;DKFZp686J01190 Probable ATP-dependent RNA helicase DDX5 yes no 2 0.02248 55.531 1 0.34699 0.44175 NaN 1 Median 0.34699 0.44175 NaN 1 0 Median NaN NaN NaN 0 0 Median 15469000 11592000 3877300 15469000 11592000 3877300 0 0 0 11901 833 12218 42773 64237 64237 1 TIVITSHPGQIVK ALCGFQKPISTLDNRTIVITSHPGQIVKHG NRTIVITSHPGQIVKHGDIKCVLNEGMPIY R T I V K H 0 0 0 0 0 1 0 1 1 3 0 1 0 0 1 1 2 0 0 2 0 0 13 0 1391.8136 P31689;B7Z5C0;Q9NXZ8 P31689 284 296 DNAJA1;HDJ2 DnaJ homolog subfamily A member 1 yes no 2;3 0.0041706 94.767 3 3 1.0325 1.4288 47.717 4 Median 0.46555 0.56989 NaN 1 0 Median 1.0897 1.5081 5.5669 3 0 Plateau 50050000 30620000 19430000 34696000 23198000 11498000 15354000 7422100 7932300 11902 1309 12219 42774;42775;42776;42777;42778;42779 64238;64239;64240;64241;64242;64243;64244;64245 64242 8 TIVLQEGNSQK IQELQQSLNQDFHQKTIVLQEGNSQKKSNI FHQKTIVLQEGNSQKKSNISEKTKRLNELK K T I Q K K 0 0 1 0 0 2 1 1 0 1 1 1 0 0 0 1 1 0 0 1 0 0 11 0 1215.6459 Q9BZD4;A0A024R8Y0;E9PQC4 Q9BZD4 202 212 NUF2;CDCA1 Kinetochore protein Nuf2 yes no 2 0.0063125 53.756 1 2 0.45575 0.61367 0.25118 2 Median NaN NaN NaN 0 0 Median 0.45575 0.61367 0.25118 2 0 Median 7708500 3838300 3870200 1208100 0 1208100 6500400 3838300 2662100 11903 1727 12220 42780;42781;42782 64246;64247;64248;64249 64249 4 TIYPLADLLARPLPEGVDPLK NQITLVEDVLAKLCKTIYPLADLLARPLPE DLLARPLPEGVDPLKLEIYLTDEDFEFALD K T I L K L 2 1 0 2 0 0 1 1 0 1 5 1 0 0 4 0 1 0 1 1 0 0 21 1 2290.2937 O95425;B4E3N7;B4E3H1;Q569J5 O95425 2155 2175 SVIL Supervillin yes no 3 0.022725 16.93 1 1.0781 1.3832 NaN 1 Median 1.0781 1.3832 NaN 1 0 Median NaN NaN NaN 0 0 Median 1723600 654740 1068800 1723600 654740 1068800 0 0 0 11904 1220 12221 42783 64250 64250 1 TKDDIIICEIGDVFK KDVVVQHVHFDGLGRTKDDIIICEIGDVFK TKDDIIICEIGDVFKAKNLIEVMRKSHEAR R T K F K A 0 0 0 3 1 0 1 1 0 4 0 2 0 1 0 0 1 0 0 1 0 0 15 1 1764.8968 Q9Y512 Q9Y512 58 72 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 2;3 8.5148E-06 127.78 5 0.46334 0.57297 6.5656 5 Median 0.46334 0.57297 6.5656 5 0 Median NaN NaN NaN 0 0 Median 50876000 32287000 18589000 50876000 32287000 18589000 0 0 0 11905 1827 12222 42784;42785;42786;42787;42788 64251;64252;64253;64254;64255;64256;64257;64258 64256 8 TKIDCDNLEQYFIQQGGGPDKK AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQ LEQYFIQQGGGPDKKGHQFSCVCLHGDRKP R T K K K G 0 0 1 3 1 3 1 3 0 2 1 3 0 1 1 0 1 0 1 0 0 0 22 2 2553.217 F1T0B3;A0A087X2G1;A3RJH1;Q92499;B4DP70 F1T0B3 434 455 DDX1 ATP-dependent RNA helicase DDX1 yes no 3 0.0068763 81.017 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11906 378 12223 42789 64259 64259 1 TKPHLFYIPGR WNEHNAKIIKYIRTKTKPHLFYIPGRMCPA IRTKTKPHLFYIPGRMCPATQKLIEESQRK K T K G R M 0 1 0 0 0 0 0 1 1 1 1 1 0 1 2 0 1 0 1 0 0 0 11 1 1327.7401 A8K964;Q9H307 A8K964 237 247 PNN Pinin yes no 3 0.00040218 62.924 1 0.38702 0.49181 NaN 1 Median 0.38702 0.49181 NaN 1 0 Median NaN NaN NaN 0 0 Median 4055200 2733900 1321200 4055200 2733900 1321200 0 0 0 11907 644 12224 42790 64260 64260 1 TKPIIAVAQSSLTFIK DLSIFRTPISKTNKRTKPIIAVAQSSLTFI KPIIAVAQSSLTFIKPLKTDIPRHPMPFAA R T K I K P 2 0 0 0 0 1 0 0 0 3 1 2 0 1 1 2 2 0 0 1 0 0 16 1 1716.0186 Q8IZT6;B3KWI2 Q8IZT6 656 671 ASPM Abnormal spindle-like microcephaly-associated protein yes no 3 0.0044541 29.687 1 0.81794 0.97537 NaN 1 Median 0.81794 0.97537 NaN 1 0 Median NaN NaN NaN 0 0 Median 4245900 2064100 2181800 4245900 2064100 2181800 0 0 0 11908 1631 12225 42791 64261;64262 64261 2 TKTPGPGAQSALR ITALHIKLRATGGNRTKTPGPGAQSALRAL NRTKTPGPGAQSALRALARSGMKIGRIEDV R T K L R A 2 1 0 0 0 1 0 2 0 0 1 1 0 0 2 1 2 0 0 0 0 0 13 1 1282.6993 P62263;E5RH77;H0YB22 P62263 105 117 RPS14 40S ribosomal protein S14 yes no 2 0.041533 40.589 1 0.9306 1.1452 NaN 1 Median 0.9306 1.1452 NaN 1 0 Median NaN NaN NaN 0 0 Median 1942900 721920 1221000 1942900 721920 1221000 0 0 0 11909 1401 12226 42792 64263 64263 1 TKYETELNLR LLQIDNARLAADDFRTKYETELNLRMSVEA ADDFRTKYETELNLRMSVEADINGLRRVLD R T K L R M 0 1 1 0 0 0 2 0 0 0 2 1 0 0 0 0 2 0 1 0 0 0 10 1 1265.6616 CON__P02533;P02533 CON__P02533 202 211 KRT14 Keratin, type I cytoskeletal 14 no no 2 0.012442 82.749 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51899000 51899000 0 13119000 13119000 0 38780000 38780000 0 + 11910 949 12227 42793;42794 64264;64265 64264 2 TLAGLPLLVAYK EAAQGVKILGKDLEKTLAGLPLLVAYKEDE LEKTLAGLPLLVAYKEDEIPVLKDELIHEL K T L Y K E 2 0 0 0 0 0 0 1 0 0 4 1 0 0 1 0 1 0 1 1 0 0 12 0 1257.7697 Q8N5A0;A0A087WUT6;O60841;B3KM86;D3DVI5 Q8N5A0 941 952 EIF5B Eukaryotic translation initiation factor 5B yes no 2 0.026292 80.455 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 485110 485110 0 485110 485110 0 0 0 0 11911 345 12228 42795;42796 64266;64267 64266 2 TLATDILMGVLK LERYGVIILDEAHERTLATDILMGVLKEVV HERTLATDILMGVLKEVVRQRSDLKVIVMS R T L L K E 1 0 0 1 0 0 0 1 0 1 3 1 1 0 0 0 2 0 0 1 0 0 12 0 1273.7316 O43143;B4E0S6 O43143 266 277 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 0.0003231 114.51 3 0.66666 0.84614 25.913 2 Median 0.66666 0.84614 25.913 2 0 Median NaN NaN NaN 0 0 Median 7661700 5311800 2349800 7661700 5311800 2349800 0 0 0 11912 1180 12229;12230 42797;42798;42799 64268;64269;64270;64271 64269 429 4 TLATTLAPR GSASQANIRLTSLKKTLATTLAPRVLLPAI LTSLKKTLATTLAPRVLLPAIKKTYKQIEK K T L P R V 2 1 0 0 0 0 0 0 0 0 2 0 0 0 1 0 3 0 0 0 0 0 9 0 942.54983 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8;Q8N7L7;Q96ES5 B2RWN5 1812 1820 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.0027589 81.296 2 2 0.85716 1.157 4.3019 2 Median 0.85716 1.157 4.3019 2 0 Median NaN NaN NaN 0 0 Median 71911000 49765000 22146000 49731000 27585000 22146000 22180000 22180000 0 11913 748 12231 42800;42801;42802;42803 64272;64273;64274;64275 64273 4 TLAVSGLGVVGR STECTLILTEGDSAKTLAVSGLGVVGRDKY SAKTLAVSGLGVVGRDKYGVFPLRGKILNV K T L G R D 1 1 0 0 0 0 0 3 0 0 2 0 0 0 0 1 1 0 0 3 0 0 12 0 1127.6663 P11388 P11388 467 478 TOP2A DNA topoisomerase 2-alpha yes yes 2 1.2095E-66 215.93 7 4 0.79901 1.1681 13.244 7 Median 0.84427 1.1538 9.8771 4 0 Median 0.75664 1.256 19.472 3 0 Median 3687200000 2053800000 1633400000 2343900000 1305300000 1038500000 1343300000 748520000 594820000 11914 1256 12232 42804;42805;42806;42807;42808;42809;42810;42811;42812;42813;42814 64276;64277;64278;64279;64280;64281;64282;64283;64284;64285;64286;64287;64288;64289;64290;64291;64292;64293;64294;64295;64296;64297;64298;64299;64300;64301;64302;64303;64304;64305 64290 30 TLCGTPNYIAPEVLSK FGLATKVEYDGERKKTLCGTPNYIAPEVLS LCGTPNYIAPEVLSKKGHSFEVDVWSIGCI K T L S K K 1 0 1 0 1 0 1 1 0 1 2 1 0 0 2 1 2 0 1 1 0 0 16 0 1761.8971 B2R841;P53350;B4E083;Q59GD0 B2R841 210 225 PLK1 Serine/threonine-protein kinase PLK;Serine/threonine-protein kinase PLK1 yes no 2 3.5669E-07 80.522 2 0.67969 0.86298 12.439 2 Median 0.67969 0.86298 12.439 2 0 Median NaN NaN NaN 0 0 Median 18813000 10442000 8370300 18813000 10442000 8370300 0 0 0 11915 714 12233 42815;42816 64306;64307;64308 64306 3 TLCLEVVLCR NAVFFLLPKFHGVLKTLCLEVVLCRVEGMT HGVLKTLCLEVVLCRVEGMTELYFQLKSKD K T L C R V 0 1 0 0 2 0 1 0 0 0 3 0 0 0 0 0 1 0 0 2 0 0 10 0 1261.6523 P78527 P78527 2395 2404 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0063707 58.981 1 0.49035 0.675 NaN 1 Median 0.49035 0.675 NaN 1 0 Median NaN NaN NaN 0 0 Median 4753600 3102700 1650900 4753600 3102700 1650900 0 0 0 11916 1427 12234 42817 64309 64309 1 TLCLSTPSSSTVK NLDLGPTAPSLEKEKTLCLSTPSSSTVKHS EKTLCLSTPSSSTVKHSTSSIGSMLAQADK K T L V K H 0 0 0 0 1 0 0 0 0 0 2 1 0 0 1 4 3 0 0 1 0 0 13 0 1379.6966 Q03164;E9PR05;Q9HB80 Q03164 988 1000 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 0.0029252 87.298 1 0.77369 1.0205 NaN 1 Median 0.77369 1.0205 NaN 1 0 Median NaN NaN NaN 0 0 Median 2909800 1235800 1674000 2909800 1235800 1674000 0 0 0 11917 1438 12235 42818 64310;64311 64311 2 TLCPLCFSILK SSPQAAVPYKKDVGKTLCPLCFSILKGPIS DVGKTLCPLCFSILKGPISDALAHHLRERH K T L L K G 0 0 0 0 2 0 0 0 0 1 3 1 0 1 1 1 1 0 0 0 0 0 11 0 1350.704 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 622 632 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 1.2333E-08 121.73 4 0.66379 0.85186 6.9609 3 Median 0.66379 0.85186 6.9609 3 0 Median NaN NaN NaN 0 0 Median 29206000 17253000 11953000 29206000 17253000 11953000 0 0 0 11918 729 12236 42819;42820;42821;42822 64312;64313;64314;64315;64316 64316 5 TLDAQFENDER TIYICQFLTRIAAGKTLDAQFENDERITPL AAGKTLDAQFENDERITPLESALMIWGSIE K T L E R I 1 1 1 2 0 1 2 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 11 0 1336.5895 E7EWM7;A8K914;A0A024R7X2;A0A024R7X1;P54274;Q5QGN5 E7EWM7 33 43 TERF1 Telomeric repeat-binding factor 1 yes no 2 4.9974E-05 73.985 3 1 0.8195 1.0963 16.085 2 Median 0.72133 0.97842 NaN 1 0 Median 0.93104 1.2283 NaN 1 0 Median 7141500 3330600 3810900 4713000 1992000 2721000 2428500 1338600 1089900 11919 186 12237 42823;42824;42825;42826 64317;64318;64319;64320 64319 4 TLDELGIHLTK ILAQVVGDVDTSLPRTLDELGIHLTKEELK SLPRTLDELGIHLTKEELKLNIRPLLRLVC R T L T K E 0 0 0 1 0 0 1 1 1 1 3 1 0 0 0 0 2 0 0 0 0 0 11 0 1238.6871 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 346 356 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 3 0.010101 60.161 1 0.68159 0.88533 NaN 1 Median 0.68159 0.88533 NaN 1 0 Median NaN NaN NaN 0 0 Median 3301500 1942000 1359400 3301500 1942000 1359400 0 0 0 11920 654 12238 42827 64321 64321 1 TLDELSQGTTTVK VSARDLFRAQLISRKTLDELSQGTTTVKEV RKTLDELSQGTTTVKEVAEMDSVKRSLEGG K T L V K E 0 0 0 1 0 1 1 1 0 0 2 1 0 0 0 1 4 0 0 1 0 0 13 0 1391.7144 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 1543 1555 EPPK1 Epiplakin no no 2 0.0096518 48.741 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1577200 0 1577200 0 0 0 1577200 0 1577200 11921 373;1386 12239 42828 64322;64323 64322 2 TLDLPIYVTR HIKYAVTTGDHGIIRTLDLPIYVTRVKGNN HGIIRTLDLPIYVTRVKGNNVYCLDRECRP R T L T R V 0 1 0 1 0 0 0 0 0 1 2 0 0 0 1 0 2 0 1 1 0 0 10 0 1189.6707 P53621 P53621 563 572 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.0036564 74.165 4 2 0.44478 0.60965 102.05 6 Median 0.45768 0.62685 10.553 4 0 Linear 2.85 4.0707 2.4661 2 0 Median 49128000 26882000 22246000 31563000 22044000 9519100 17565000 4838100 12727000 11922 1371 12240 42829;42830;42831;42832;42833;42834 64324;64325;64326;64327;64328;64329;64330;64331 64327 8 TLDQISDADNIPGLLVLK LIKLSDYDSSEEAIRTLDQISDADNIPGLL QISDADNIPGLLVLKSLAYRNKGSFDEAAK R T L L K S 1 0 1 3 0 1 0 1 0 2 4 1 0 0 1 1 1 0 0 1 0 0 18 0 1924.0517 Q6PGP7;D6RCE2 Q6PGP7 375 392 TTC37 Tetratricopeptide repeat protein 37 yes no 2 0.027663 60.364 1 0.41489 0.53625 NaN 1 Median 0.41489 0.53625 NaN 1 0 Median NaN NaN NaN 0 0 Median 853050 559810 293240 853050 559810 293240 0 0 0 11923 1594 12241 42835 64332 64332 1 TLDQVLEDVDQCCQALSQR WEVKRKMKAIGWGKKTLDQVLEDVDQCCQA VLEDVDQCCQALSQRLGTQPYFFNKQPTEL K T L Q R L 1 1 0 3 2 4 1 0 0 0 3 0 0 0 0 1 1 0 0 2 0 0 19 0 2277.0365 C9JNK6;C9JAZ1;B7Z9F3;O75431;B3KM74 C9JNK6 122 140 MTX2 Metaxin-2 yes no 2 5.8366E-51 200.97 3 0.43296 0.59252 11.823 2 Median 0.43296 0.59252 11.823 2 0 Median NaN NaN NaN 0 0 Median 14310000 10457000 3853000 14310000 10457000 3853000 0 0 0 11924 920 12242 42836;42837;42838 64333;64334;64335;64336;64337 64333 5 TLDVVLEEHLK QFLPLIRLLESKYPRTLDVVLEEHLKEIAD KYPRTLDVVLEEHLKEIADLKKQELFHQFV R T L L K E 0 0 0 1 0 0 2 0 1 0 3 1 0 0 0 0 1 0 0 2 0 0 11 0 1294.7133 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 439 449 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2;3 0.0056306 66.595 5 2 0.87456 1.0989 12.384 5 Median 0.87456 1.0989 12.384 5 0 Median NaN NaN NaN 0 0 Median 69388000 22399000 46989000 42635000 22399000 20236000 26753000 0 26753000 11925 748 12243 42839;42840;42841;42842;42843;42844;42845 64338;64339;64340;64341;64342;64343;64344;64345 64343 8 TLEEDEEELFK PQFEPIVSLPEQEIKTLEEDEEELFKMRAK QEIKTLEEDEEELFKMRAKLFRFASENDLP K T L F K M 0 0 0 1 0 0 5 0 0 0 2 1 0 1 0 0 1 0 0 0 0 0 11 0 1380.6297 A0A140VK94;F6WQW2;P43487;C9JJ34;C9JDM3;B7Z6U1;B4DE76 A0A140VK94 40 50 RANBP1 Ran-specific GTPase-activating protein yes no 2 0.015877 97.965 2 0.48806 0.61787 1.0757 2 Median 0.48806 0.61787 1.0757 2 0 Median NaN NaN NaN 0 0 Median 10790000 7134400 3655300 10790000 7134400 3655300 0 0 0 11926 511 12244 42846;42847 64346;64347 64346 0 TLEEDVDDRAPSK GLSEKIFAKPEEQRKTLEEDVDDRAPSKKG RKTLEEDVDDRAPSKKGKKRKAQREEEQEH K T L S K K 1 1 0 3 0 0 2 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 13 1 1473.6947 Q5T0F3;Q13823 Q5T0F3 642 654 GNL2 Nucleolar GTP-binding protein 2 yes no 2;3 1.7477E-21 169.65 1 2 0.6484 0.92859 58.506 2 Median 1.0659 1.4044 NaN 1 0 Median 0.39443 0.61399 NaN 1 0 Median 23206000 13758000 9448400 14407000 6675600 7731000 8799500 7082100 1717400 11927 1477 12245 42848;42849;42850 64348;64349;64350 64348 3 TLEEDVDDRAPSKK GLSEKIFAKPEEQRKTLEEDVDDRAPSKKG KTLEEDVDDRAPSKKGKKRKAQREEEQEHS K T L K K G 1 1 0 3 0 0 2 0 0 0 1 2 0 0 1 1 1 0 0 1 0 0 14 2 1601.7897 Q5T0F3;Q13823 Q5T0F3 642 655 GNL2 Nucleolar GTP-binding protein 2 yes no 3 3.8855E-05 107.99 3 2 0.70904 0.89473 19.382 5 Median 0.77783 0.91821 8.231 3 0 Median 0.42187 0.69784 15.025 2 0 Median 40809000 22932000 17876000 32642000 17395000 15247000 8167000 5537600 2629400 11928 1477 12246 42851;42852;42853;42854;42855 64351;64352;64353;64354;64355;64356;64357;64358 64351 8 TLEFAGQDLSAYLLK VQPFHQGRPLPASGKTLEFAGQDLSAYLLK TLEFAGQDLSAYLLKSLFKEDCDRRCLFQL K T L L K S 2 0 0 1 0 1 1 1 0 0 4 1 0 1 0 1 1 0 1 0 0 0 15 0 1667.877 Q9H568 Q9H568 172 186 ACTL8 Actin-like protein 8 yes yes 2 5.8989E-20 158.56 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15188000 15188000 0 15188000 15188000 0 0 0 0 11929 1735 12247 42856;42857;42858 64359;64360;64361 64361 3 TLEFNRR SKNKCHKARRCHMNRTLEFNRRQKKNIWLE ARRCHMNRTLEFNRRQKKNIWLETHIWHAK R T L R R Q 0 2 1 0 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 7 1 934.49846 Q96F88;Q99575 Q96F88 189 195 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 0.042701 57.559 1 0.37846 0.50639 NaN 1 Median NaN NaN NaN 0 0 Median 0.37846 0.50639 NaN 1 0 Median 4362000 3066600 1295300 0 0 0 4362000 3066600 1295300 11930 1685 12248 42859 64362 64362 1 TLEGELHDLR NSKEAALSTALSEKRTLEGELHDLRGQVAK LSEKRTLEGELHDLRGQVAKLEAALGEAKK R T L L R G 0 1 0 1 0 0 2 1 1 0 3 0 0 0 0 0 1 0 0 0 0 0 10 0 1181.6041 P02545;W8QEH3;Q3BDU5;Q5I6Y5;Q8N519;Q5TCI8;H0YAB0 P02545 157 166 LMNA Prelamin-A/C;Lamin-A/C yes no 2;3 0.00041627 93.096 5 3 0.84549 1.1421 48.387 7 Median 0.74226 1.0231 8.2366 4 0 Median 1.739 2.5831 5.6338 3 0 Median 193020000 108990000 84027000 151840000 91685000 60154000 41177000 17304000 23873000 11931 1229 12249 42860;42861;42862;42863;42864;42865;42866;42867 64363;64364;64365;64366;64367;64368;64369;64370;64371;64372;64373;64374;64375;64376;64377 64371 15 TLELCVDNLQPDFLYDHIQPVR SALNGSQTLVSQGLRTLELCVDNLQPDFLY NLQPDFLYDHIQPVRAELMQALWRTLRNPA R T L V R A 0 1 1 3 1 2 1 0 1 1 4 0 0 1 2 0 1 0 1 2 0 0 22 0 2684.3268 Q59FH1;H0Y4W2;F2Z2U4;Q9Y4A5 Q59FH1 562 583 TRRAP Transformation/transcription domain-associated protein yes no 3 0.047139 10.554 1 0.43007 0.5827 NaN 1 Median 0.43007 0.5827 NaN 1 0 Median NaN NaN NaN 0 0 Median 3467800 2136500 1331300 3467800 2136500 1331300 0 0 0 11932 1050 12250 42868 64378 64378 1 TLELQGLINDLQR TILELRSQLQISNNRTLELQGLINDLQRER NRTLELQGLINDLQRERENLRQEIEKFQKQ R T L Q R E 0 1 1 1 0 2 1 1 0 1 4 0 0 0 0 0 1 0 0 0 0 0 13 0 1511.8308 P15924 P15924 1763 1775 DSP Desmoplakin yes yes 2 1.0902E-11 158.08 3 0.21355 0.29603 NaN 1 Median 0.21355 0.29603 NaN 1 0 Median NaN NaN NaN 0 0 Median 6609800 5413700 1196100 6609800 5413700 1196100 0 0 0 11933 1270 12251 42869;42870;42871 64379;64380;64381 64380 3 TLEQLQEK AMEMQLTPFLILLRKTLEQLQEKDTGNIFS FLILLRKTLEQLQEKDTGNIFSEPVPLSEV K T L E K D 0 0 0 0 0 2 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 8 0 987.52368 P55201 P55201 640 647 BRPF1 Peregrin yes yes 2 0.0093631 66.993 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11934 1379 12252 42872 64382 64382 1 TLESQAVETEK AFFVHDAEIVSSLGKTLESQAVETEKVLDI SLGKTLESQAVETEKVLDIIYQPQAIFRVR K T L E K V 1 0 0 0 0 1 3 0 0 0 1 1 0 0 0 1 2 0 0 1 0 0 11 0 1233.6089 B4E074;Q9NVX2;A0A0A0MRH0;K7ERN7 B4E074 76 86 NLE1 Notchless protein homolog 1 yes no 2 1.2393E-05 102.06 1 0.51973 0.65965 NaN 1 Median 0.51973 0.65965 NaN 1 0 Median NaN NaN NaN 0 0 Median 6746500 4315400 2431100 6746500 4315400 2431100 0 0 0 11935 883 12253 42873 64383 64383 1 TLETVPLER ______________________________ ______________________________ K T L E R K 0 1 0 0 0 0 2 0 0 0 2 0 0 0 1 0 2 0 0 1 0 0 9 0 1056.5815 P22626;A0A087WUI2 P22626 4 12 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2 0.012005 88.819 2 1 0.76304 1.0548 145.14 2 Median 0.26955 0.37797 NaN 1 0 Median 2.16 2.9436 NaN 1 0 Median 12107000 7533500 4573900 6492600 5837900 654680 5614800 1695600 3919200 11936 1290 12254 42874;42875;42876 64384;64385;64386 64384 3 TLFATEDALEVR EYKMGRTKIFIRFPKTLFATEDALEVRRQS FPKTLFATEDALEVRRQSLATKIQAAWRGF K T L V R R 2 1 0 1 0 0 2 0 0 0 2 0 0 1 0 0 2 0 0 1 0 0 12 0 1363.6983 F5H6E2;B7Z3E5;O00159;D3DTH7;B7Z9C0 F5H6E2 698 709 MYO1C Unconventional myosin-Ic yes no 2 1.0253E-08 129.16 4 0.67252 0.89935 5.6738 4 Median 0.67252 0.89935 5.6738 4 0 Median NaN NaN NaN 0 0 Median 55028000 30300000 24728000 55028000 30300000 24728000 0 0 0 11937 905 12255 42877;42878;42879;42880 64387;64388;64389;64390;64391;64392;64393;64394 64393 8 TLFPLIEAK AEVTTKSQIPLSKIKTLFPLIEAKKKDQVT PLSKIKTLFPLIEAKKKDQVTAQEIFQDNH K T L A K K 1 0 0 0 0 0 1 0 0 1 2 1 0 1 1 0 1 0 0 0 0 0 9 0 1030.6063 P13010;Q53T09 P13010 535 543 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 0.0053863 75.043 3 2 0.57736 0.7518 17.313 5 Median 0.57734 0.74361 11.002 3 0 Median 0.58054 0.92966 2.7533 2 0 Median 340250000 212730000 127520000 232600000 146030000 86566000 107650000 66696000 40955000 11938 1262 12256 42881;42882;42883;42884;42885 64395;64396;64397;64398;64399;64400;64401;64402;64403;64404 64399 10 TLFSNIVLSGGSTLFK VLVFAIQKSDMDLRRTLFSNIVLSGGSTLF LFSNIVLSGGSTLFKGFGDRLLSEVKKLAP R T L F K G 0 0 1 0 0 0 0 2 0 1 3 1 0 2 0 3 2 0 0 1 0 0 16 0 1682.9243 B4DMT4;B4DXP9;R4GMT0;B4DM97;P61163 B4DMT4 219 234 ACTR1A Alpha-centractin yes no 2 0.0069858 86.262 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1204100 0 1204100 1204100 0 1204100 0 0 0 11939 831 12257 42886 64405 64405 1 TLFVLNVPPYCTEESLSR HGVRQGTKSTWPQKRTLFVLNVPPYCTEES VLNVPPYCTEESLSRLLSTCGLVQSVELQE R T L S R L 0 1 1 0 1 0 2 0 0 0 3 0 0 1 2 2 2 0 1 2 0 0 18 0 2124.0561 Q9Y3A4 Q9Y3A4 60 77 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 2 1.4673E-08 113.24 3 1.0241 1.4282 12.02 3 Plateau 1.0241 1.4282 12.02 3 0 Plateau NaN NaN NaN 0 0 Median 9847400 4622100 5225300 9847400 4622100 5225300 0 0 0 11940 1815 12258 42887;42888;42889 64406;64407;64408;64409;64410 64407 5 TLGDFAAEYAK VTGKGQDGIGSKAEKTLGDFAAEYAKSNRS KAEKTLGDFAAEYAKSNRSTCKGCMEKIEK K T L A K S 3 0 0 1 0 0 1 1 0 0 1 1 0 1 0 0 1 0 1 0 0 0 11 0 1184.5714 A0A024R3T8;P09874;B4E0E1;B2R5W3;Q05D33;Q6PJL0 A0A024R3T8 109 119 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 1.9714E-06 114.4 4 2 1.0634 1.3795 41.55 6 Median 1.1024 1.4268 3.5086 4 0 Median 0.3986 0.63078 1.5868 2 0 Median 522120000 298280000 223840000 316520000 151520000 165000000 205600000 146770000 58835000 11941 107 12259 42890;42891;42892;42893;42894;42895 64411;64412;64413;64414;64415;64416;64417;64418;64419;64420;64421;64422;64423 64415 13 TLGDTGFMPPDK ITHLVIRPNGRVALRTLGDTGFMPPDKITR ALRTLGDTGFMPPDKITRS___________ R T L D K I 0 0 0 2 0 0 0 2 0 0 1 1 1 1 2 0 2 0 0 0 0 0 12 0 1277.5962 Q96HS1;F5GXG4 Q96HS1 274 285 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 2 0.006722 42.336 1 1.4164 2.093 NaN 1 Median NaN NaN NaN 0 0 Median 1.4164 2.093 NaN 1 0 Median 5982100 2740700 3241400 0 0 0 5982100 2740700 3241400 11942 1688 12260 42896 64424 64424 763 1 TLGECGFTSQTARPQAPATVGLAFR EQRLYKDDQLLDDGKTLGECGFTSQTARPQ TARPQAPATVGLAFRADDTFEALCIEPFSS K T L F R A 4 2 0 0 1 2 1 3 0 0 2 0 0 2 2 1 4 0 0 1 0 0 25 1 2635.3177 B8ZZU8;I3L0M9;Q15370 B8ZZU8 51 75 TCEB2 Transcription elongation factor B polypeptide 2 yes no 3 4.4328E-07 81.665 3 0.34086 0.46732 NaN 1 Median 0.34086 0.46732 NaN 1 0 Median NaN NaN NaN 0 0 Median 13340000 11599000 1740900 13340000 11599000 1740900 0 0 0 11943 925 12261 42897;42898;42899 64425;64426;64427;64428 64425 4 TLGHNLLVSELYNQLK YQIDAAIVRIMKMRKTLGHNLLVSELYNQL LGHNLLVSELYNQLKFPVKPGDLKKRIESL K T L L K F 0 0 2 0 0 1 1 1 1 0 5 1 0 0 0 1 1 0 1 1 0 0 16 0 1841.0047 Q13619;A0A0A0MR50;B4DKT2 Q13619 709 724 CUL4A Cullin-4A yes no 3 0.00063003 81.651 4 2 0.51882 0.68123 15.678 6 Median 0.59162 0.75828 17.752 4 0 Median 0.41267 0.65656 3.6343 2 0 Median 125000000 82404000 42596000 50921000 31048000 19873000 74079000 51356000 22723000 11944 1474 12262 42900;42901;42902;42903;42904;42905 64429;64430;64431;64432;64433;64434;64435;64436;64437 64430 8 TLGILGLGR KWERKKFMGTELNGKTLGILGLGRIGREVA TELNGKTLGILGLGRIGREVATRMQSFGMK K T L G R I 0 1 0 0 0 0 0 3 0 1 3 0 0 0 0 0 1 0 0 0 0 0 9 0 898.56 O43175;V9HW79;Q5SZU1;B3KSC3;Q9UMY2 O43175 147 155 PHGDH;HEL-S-113;PGDH3 D-3-phosphoglycerate dehydrogenase yes no 2 0.0016593 95.531 2 2 0.60858 0.80489 NaN 1 Median 0.60858 0.80489 NaN 1 0 Median NaN NaN NaN 0 0 Median 23903000 12638000 11266000 16505000 12638000 3867200 7398400 0 7398400 11945 1182 12263 42906;42907;42908;42909 64438;64439;64440;64441;64442;64443 64441 6 TLGVDLVALATR ECNVRVSRSFPFVSKTLGVDLVALATRVIM VSKTLGVDLVALATRVIMGEEVEPVGLMTG K T L T R V 2 1 0 1 0 0 0 1 0 0 3 0 0 0 0 0 2 0 0 2 0 0 12 0 1227.7187 Q53SY7;F8VPD4;P27708 Q53SY7 1155 1166 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.0024336 109.16 1 0.37225 0.52755 NaN 1 Median 0.37225 0.52755 NaN 1 0 Median NaN NaN NaN 0 0 Median 2765700 1996100 769630 2765700 1996100 769630 0 0 0 11946 1060 12264 42910 64444;64445;64446 64444 3 TLGVQRPK TGSSRLHDLYWQAMKTLGVQRPKLEKKDAK LYWQAMKTLGVQRPKLEKKDAKEIPSATQS K T L P K L 0 1 0 0 0 1 0 1 0 0 1 1 0 0 1 0 1 0 0 1 0 0 8 1 897.5396 Q9BQG0;I3L1L3;B4DE42 Q9BQG0 1141 1148 MYBBP1A Myb-binding protein 1A yes no 2;3 0.049444 67.981 1 1 0.76114 1.1008 11.773 2 Median 0.91488 1.1963 NaN 1 0 Median 0.63323 1.0129 NaN 1 0 Median 15514000 9190600 6323700 1653900 941140 712800 13860000 8249500 5610900 11947 1708 12265 42911;42912 64447;64448 64448 2 TLHCEGTEINSDDEQESK LMTFGIEPFKTKKIKTLHCEGTEINSDDEQ CEGTEINSDDEQESKEVEETATAKNVLKLL K T L S K E 0 0 1 2 1 1 4 1 1 1 1 1 0 0 0 2 2 0 0 0 0 0 18 0 2090.8699 H0Y9Z8;Q9BPX3;Q6NUR1 Q9BPX3 664 681 NCAPG Condensin complex subunit 3 no no 2;3 2.2242E-40 183.75 5 0.57624 0.72866 16.812 5 Median 0.57624 0.72866 16.812 5 0 Median NaN NaN NaN 0 0 Median 23500000 15068000 8432800 23500000 15068000 8432800 0 0 0 11948 1706;1096 12266 42913;42914;42915;42916;42917 64449;64450;64451;64452;64453;64454;64455;64456 64449 8 TLHEVSLQESIR AENKTTTTARLASARTLHEVSLQESIRYAP SARTLHEVSLQESIRYAPGDAVEKWLNDLL R T L I R Y 0 1 0 0 0 1 2 0 1 1 2 0 0 0 0 2 1 0 0 1 0 0 12 0 1410.7467 Q05CW7 Q05CW7 459 470 NAT10 yes yes 2;3 6.054E-08 93.442 5 4 0.66453 0.99123 17.379 7 Median 0.80157 1.101 11.372 4 0 Median 0.56277 0.82168 16.322 3 0 Median 535570000 318960000 216610000 399020000 230330000 168690000 136550000 88633000 47919000 11949 1443 12267 42918;42919;42920;42921;42922;42923;42924;42925;42926 64457;64458;64459;64460;64461;64462;64463;64464;64465;64466;64467;64468;64469;64470;64471;64472 64460 16 TLIDDDNPPVSFVK GLCRIWDTASGQCLKTLIDDDNPPVSFVKF KTLIDDDNPPVSFVKFSPNGKYILAATLDN K T L V K F 0 0 1 3 0 0 0 0 0 1 1 1 0 1 2 1 1 0 0 2 0 0 14 0 1558.7879 P61964 P61964 208 221 WDR5 WD repeat-containing protein 5 yes yes 2 0.00011463 113.38 4 2 0.77381 1.0751 10.671 6 Median 0.78486 0.98378 11.471 4 0 Median 0.76766 1.1585 0.88809 2 0 Median 76388000 46519000 29869000 50059000 30504000 19556000 26328000 16015000 10313000 11950 1394 12268 42927;42928;42929;42930;42931;42932 64473;64474;64475;64476;64477;64478;64479;64480;64481;64482;64483 64475 11 TLIEELK KCLENRVAVLENQNKTLIEELKALKDLYCH AVLENQNKTLIEELKALKDLYCHKSD____ K T L L K A 0 0 0 0 0 0 2 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 7 0 844.49058 Q53X93;Q5U0J5;P16220;Q53RU9;E9PAR2;Q59FC7;G5E998;B2R8K4;F1JVV6;F1JVV5;P18846 Q53X93 310 316 CREB1;CREM;EWSR1/ATF1 fusion;ATF1 Cyclic AMP-responsive element-binding protein 1;Cyclic AMP-dependent transcription factor ATF-1 yes no 2 0.02312 72.138 1 0.6076 0.91549 NaN 1 Median NaN NaN NaN 0 0 Median 0.6076 0.91549 NaN 1 0 Median 8115200 4896800 3218400 0 0 0 8115200 4896800 3218400 11951 1272 12269 42933 64484 64484 1 TLIQNCGASTIR WPYRAVAQALEVIPRTLIQNCGASTIRLLT IPRTLIQNCGASTIRLLTSLRAKHTQENCE R T L I R L 1 1 1 0 1 1 0 1 0 2 1 0 0 0 0 1 2 0 0 0 0 0 12 0 1332.682 B4DUR8;B3KX11;Q2TU64;Q59H77;P49368 B4DUR8 405 416 CCT3 T-complex protein 1 subunit gamma yes no 2 1.6821E-05 94.297 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11952 787 12270 42934;42935 64485;64486 64486 2 TLKPEGNILR DIDVQLSSELTDSLRTLKPEGNILRDRFKS TDSLRTLKPEGNILRDRFKSFQRRNMIEPR R T L L R D 0 1 1 0 0 0 1 1 0 1 2 1 0 0 1 0 1 0 0 0 0 0 10 1 1139.6663 Q7L4X7;Q96CS0;Q53YP0;B4E1N4;Q9NZM5;B4DVK1;B4DND9;M0QZ34;M0QYZ9;Q9P0B0;M0QZU5 Q7L4X7 426 435 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes no 3 0.016607 61.765 2 0.79331 1.0657 NaN 1 Median 0.79331 1.0657 NaN 1 0 Median NaN NaN NaN 0 0 Median 11735000 2600700 9134800 11735000 2600700 9134800 0 0 0 11953 887 12271 42936;42937 64487;64488 64488 2 TLLADKGEIR EDFFFYSLVYDPQQKTLLADKGEIRVGNRY DPQQKTLLADKGEIRVGNRYQADITDLLKE K T L I R V 1 1 0 1 0 0 1 1 0 1 2 1 0 0 0 0 1 0 0 0 0 0 10 1 1114.6346 E7EQY4;E7EV10;Q9BTC8;E9PCS8;D6W5A2;Q53RX8;E7ESY4;Q13330;A0A024R6P5;Q86TR6 E7ESY4 159 168 MTA3;tmp_locus_6;MTA1 Metastasis-associated protein MTA3;Metastasis-associated protein MTA1 no no 3 0.0058396 47.559 1 0.80209 1.0233 NaN 1 Median 0.80209 1.0233 NaN 1 0 Median NaN NaN NaN 0 0 Median 9030800 4958600 4072300 9030800 4958600 4072300 0 0 0 11954 1014;1012 12272 42938 64489;64490 64490 2 TLLADQGEIR EDCFFYSLVFDPVQKTLLADQGEIRVGCKY DPVQKTLLADQGEIRVGCKYQAEIPDRLVE K T L I R V 1 1 0 1 0 1 1 1 0 1 2 0 0 0 0 0 1 0 0 0 0 0 10 0 1114.5982 A0A024R534;O94776 A0A024R534 139 148 MTA2 Metastasis-associated protein MTA2 yes no 2 0.00056891 93.143 3 2 0.75947 1.0287 25.678 5 Median 0.73782 1.0068 2.3312 3 0 Median 1.0099 1.6055 0.39733 2 0 Median 171070000 91895000 79180000 95943000 55987000 39956000 75132000 35908000 39223000 11955 133 12273 42939;42940;42941;42942;42943 64491;64492;64493;64494;64495;64496;64497 64492 7 TLLAHAIAGELDLPILK PPRGVLLHGPPGCGKTLLAHAIAGELDLPI LAHAIAGELDLPILKVAAPEIVSGVSGESE K T L L K V 3 0 0 1 0 0 1 1 1 2 5 1 0 0 1 0 1 0 0 0 0 0 17 0 1787.0557 B4DLM8;O15381;B4DQJ4 B4DLM8 312 328 NVL Nuclear valosin-containing protein-like yes no 3 0.048713 73.168 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11956 827 12274 42944 64498 64498 1 TLLDIDNTR DLKDQIVDLTVGNNKTLLDIDNTRMTLDDF TVGNNKTLLDIDNTRMTLDDFRIKFEMEQN K T L T R M 0 1 1 2 0 0 0 0 0 1 2 0 0 0 0 0 2 0 0 0 0 0 9 0 1059.556 CON__P35527;P35527 CON__P35527 225 233 KRT9 Keratin, type I cytoskeletal 9 yes no 2 3.8209E-06 145.16 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 470470000 470470000 0 470470000 470470000 0 0 0 0 + 11957 963 12275 42945;42946;42947;42948 64499;64500;64501;64502;64503 64500 5 TLLDSLR PGALFVQSHLEDLKKTLLDSLRSTSSPAKR SHLEDLKKTLLDSLRSTSSPAKRPRLKCLL K T L L R S 0 1 0 1 0 0 0 0 0 0 3 0 0 0 0 1 1 0 0 0 0 0 7 0 816.47052 B3KMR5;Q5JTH9;B3KY97 B3KMR5 820 826 RRP12 RRP12-like protein yes no 2 0.01 114.19 2 1 0.85489 1.1307 NaN 1 Median 0.85489 1.1307 NaN 1 0 Median NaN NaN NaN 0 0 Median 13564000 8738000 4826100 10058000 5232000 4826100 3506000 3506000 0 11958 756 12276 42949;42950;42951 64504;64505;64506;64507 64504 4 TLLEGEESR MNTKLALDLEIATYRTLLEGEESRMSGECA EIATYRTLLEGEESRMSGECAPNVSVSVST R T L S R M 0 1 0 0 0 0 3 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 9 0 1032.5088 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 484 492 KRT1 Keratin, type II cytoskeletal 1 no no 2 8.3755E-10 154.12 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1290600000 1290600000 0 992840000 992840000 0 297810000 297810000 0 + 11959 1113;1114 12277 42952;42953;42954;42955;42956 64508;64509;64510;64511;64512;64513;64514 64509 7 TLLENTAITIGR LHQLVEIINRPNTPKTLLENTAITIGRLGY TPKTLLENTAITIGRLGYVCPQEVAPMLQQ K T L G R L 1 1 1 0 0 0 1 1 0 2 2 0 0 0 0 0 3 0 0 0 0 0 12 0 1300.7351 A0A024RAM0;Q92973;B4DRY5;A0A024R7F7;Q4LE60;S4R398 A0A024RAM0 774 785 TNPO1;TNPO2;TNPO2 variant protein Transportin-1 yes no 2 0.0014515 91.313 2 2 0.47117 0.63108 16.224 2 Median 0.47117 0.63108 16.224 2 0 Median NaN NaN NaN 0 0 Median 20379000 6783700 13596000 11226000 6783700 4442600 9153100 0 9153100 11960 246 12278 42957;42958;42959;42960 64515;64516;64517;64518;64519 64517 5 TLLFVR SQRAVLLVGLCDSGKTLLFVRLLTGLYRDT LVGLCDSGKTLLFVRLLTGLYRDTQTSITD K T L V R L 0 1 0 0 0 0 0 0 0 0 2 0 0 1 0 0 1 0 0 1 0 0 6 0 747.46431 Q549N5;Q9Y5M8;C9J5Z8 Q549N5 78 83 SRPRB Signal recognition particle receptor subunit beta yes no 2 0.046198 71.995 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2575500 2575500 0 2575500 2575500 0 0 0 0 11961 1545 12279 42961 64520 64520 1 TLLLCGYPNVGK RQHLSRLPTIDPNTRTLLLCGYPNVGKSSF NTRTLLLCGYPNVGKSSFINKVTRADVDVQ R T L G K S 0 0 1 0 1 0 0 2 0 0 3 1 0 0 1 0 1 0 1 1 0 0 12 0 1333.7064 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;B4DHR2;O60747;Q5T3R7 Q53GS0 170 181 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.00085841 104.01 4 2 0.57814 0.80281 7.7543 2 Median 0.66529 0.84805 NaN 1 0 Median 0.5024 0.75997 NaN 1 0 Median 98921000 27054000 71867000 80045000 16258000 63787000 18876000 10796000 8080100 11962 975 12280 42962;42963;42964;42965;42966;42967 64521;64522;64523;64524;64525;64526;64527;64528 64524 8 TLLPHDPTADVFVTPAEEK QQVKDVQKLRKKEPKTLLPHDPTADVFVTP HDPTADVFVTPAEEKPIEIQWVKPEPKVDL K T L E K P 2 0 0 2 0 0 2 0 1 0 2 1 0 1 3 0 3 0 0 2 0 0 19 0 2079.0524 Q8TDN6;A0JLQ5 Q8TDN6 296 314 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 3 1.1392E-05 97.352 2 0.89991 1.1305 9.9053 2 Median 0.89991 1.1305 9.9053 2 0 Median NaN NaN NaN 0 0 Median 83940000 40112000 43828000 83940000 40112000 43828000 0 0 0 11963 1659 12281 42968;42969 64529;64530;64531;64532 64530 4 TLLPHDPTADVFVTPAEEKPIEIQWVKPEPK QQVKDVQKLRKKEPKTLLPHDPTADVFVTP EEKPIEIQWVKPEPKVDLKARKKRIYKRQR K T L P K V 2 0 0 2 0 1 4 0 1 2 2 3 0 1 6 0 3 1 0 3 0 0 31 2 3523.8603 Q8TDN6;A0JLQ5 Q8TDN6 296 326 BRIX1;BXDC2 Ribosome biogenesis protein BRX1 homolog yes no 4 2.5414E-05 37.021 2 0.69702 1.2248 2.9581 2 Median NaN NaN NaN 0 0 Median 0.69702 1.2248 2.9581 2 0 Median 154430000 86162000 68270000 0 0 0 154430000 86162000 68270000 11964 1659 12282 42970;42971 64533;64534;64535 64533 3 TLLQGSGCLAGIYLEDTK GKTTVKDLSELGSVRTLLQGSGCLAGIYLE QGSGCLAGIYLEDTKEKVSIYEAMRRGLLR R T L T K E 1 0 0 1 1 1 1 3 0 1 4 1 0 0 0 1 2 0 1 0 0 0 18 0 1937.9768 Q15149;D3DWL0 Q15149 3486 3503 PLEC;PLEC1 Plectin yes no 2 1.379E-40 191.06 4 0.65296 0.81093 9.1169 4 Median 0.65296 0.81093 9.1169 4 0 Median NaN NaN NaN 0 0 Median 73309000 43701000 29608000 73309000 43701000 29608000 0 0 0 11965 1507 12283 42972;42973;42974;42975 64536;64537;64538;64539;64540;64541;64542 64537 7 TLLQVLGGTILESER FLVYCGDTHGSFVVRTLLQVLGGTILESER TLLQVLGGTILESERARPRGSQSSEAQKTP R T L E R A 0 1 0 0 0 1 2 2 0 1 4 0 0 0 0 1 2 0 0 1 0 0 15 0 1627.9145 Q5HYL4;Q86U38 Q5HYL4 209 223 DKFZp686E1893;NOP9 Nucleolar protein 9 yes no 2 0.00049753 69.451 1 0.59241 0.80724 NaN 1 Median 0.59241 0.80724 NaN 1 0 Median NaN NaN NaN 0 0 Median 2477500 1636400 841120 2477500 1636400 841120 0 0 0 11966 1557 12284 42976 64543 64543 1 TLLTGDGGGEATGSPLAQGK QELNNRLAAEITRLRTLLTGDGGGEATGSP DGGGEATGSPLAQGKDAYELEVLLRVKESE R T L G K D 2 0 0 1 0 1 1 6 0 0 3 1 0 0 1 1 3 0 0 0 0 0 20 0 1828.9167 B9EGI2;U6FSN9;Q6WCQ1;J3KSW8;H0Y2S9;H0Y7E2;Q9Y6X7;Q5ZEZ6 B9EGI2 877 896 MPRIP;Mprip-Ntrk1 fusion gene;KIAA0864;M-RIP Tyrosine-protein kinase receptor;Myosin phosphatase Rho-interacting protein yes no 2 3.3311E-06 116.79 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3925300 0 3925300 3925300 0 3925300 0 0 0 11967 928 12285 42977;42978;42979 64544;64545;64546 64546 3 TLLVADPR ASKKEIKDILIQYDRTLLVADPRRCESKKF ILIQYDRTLLVADPRRCESKKFGGPGARAR R T L P R R 1 1 0 1 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 1 0 0 8 0 883.51272 P62249;M0R210;A0A087WZ27 P62249 118 125 RPS16;ZNF90 40S ribosomal protein S16 yes no 2 0.013568 95.531 3 2 0.88182 1.2926 19.101 4 Median 0.78613 1.0857 3.3008 2 0 Median 0.96585 1.5089 0.53299 2 0 Median 275840000 151940000 123900000 223660000 125030000 98626000 52183000 26912000 25271000 11968 1400 12286 42980;42981;42982;42983;42984 64547;64548;64549;64550;64551;64552;64553;64554;64555;64556 64549 10 TLLVHR NIAKVEQHVVDGKERTLLVHRKGSTRAFPP QHVVDGKERTLLVHRKGSTRAFPPHHPLIA R T L H R K 0 1 0 0 0 0 0 0 1 0 2 0 0 0 0 0 1 0 0 1 0 0 6 0 737.45481 Q9Y3I0;B4DNA0;Q6ZND7 Q9Y3I0 369 374 RTCB tRNA-splicing ligase RtcB homolog yes no 2 0.023619 86.344 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11969 1819 12287 42985 64557 64557 1 TLLYNPFPPTNESDVIR MFCIIDKSLPLPNDKTLLYNPFPPTNESDV LYNPFPPTNESDVIRRRTAHAFKISKIYKP K T L I R R 0 1 2 1 0 0 1 0 0 1 2 0 0 1 3 1 2 0 1 1 0 0 17 0 1975.0051 Q969X6;H3BSH7;A0A0J9YWM9;A0A0J9YXV4 Q969X6 618 634 CIRH1A Cirhin yes no 2 9.3041E-34 182.23 5 1 0.83931 1.1404 21.303 4 Median 0.85236 1.1531 22.087 3 0 Median 0.66384 1.0325 NaN 1 0 Median 170560000 91720000 78843000 138360000 72372000 65989000 32202000 19348000 12854000 11970 1680 12288 42986;42987;42988;42989;42990;42991 64558;64559;64560;64561;64562;64563;64564;64565;64566 64558 9 TLLYNPFPPTNESDVIRR MFCIIDKSLPLPNDKTLLYNPFPPTNESDV YNPFPPTNESDVIRRRTAHAFKISKIYKPL K T L R R R 0 2 2 1 0 0 1 0 0 1 2 0 0 1 3 1 2 0 1 1 0 0 18 1 2131.1062 Q969X6;H3BSH7;A0A0J9YWM9;A0A0J9YXV4 Q969X6 618 635 CIRH1A Cirhin yes no 3 0.011989 61.265 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 779620 779620 0 779620 779620 0 0 0 0 11971 1680 12289 42992 64567 64567 1 TLNDMRQEYEQLIAK VNVEINVAPGKDLTKTLNDMRQEYEQLIAK TLNDMRQEYEQLIAKNRKDIENQYETQITQ K T L A K N 1 1 1 1 0 2 2 0 0 1 2 1 1 0 0 0 1 0 1 0 0 0 15 1 1850.9196 CON__P35527;P35527;K7EQQ3 CON__P35527 322 336 KRT9 Keratin, type I cytoskeletal 9 yes no 3 0.0027108 45.864 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15827000 15827000 0 0 0 0 15827000 15827000 0 + 11972 963 12290 42993 64568 64568 344 1 TLPAHSDPVSAVHFNR ESVRIWDVKTGKCLKTLPAHSDPVSAVHFN LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR K T L N R D 2 1 1 1 0 0 0 0 2 0 1 0 0 1 2 2 1 0 0 2 0 0 16 0 1746.8802 P61964 P61964 166 181 WDR5 WD repeat-containing protein 5 yes yes 3;4 2.4575E-05 58.885 6 2 0.86748 1.1809 8.3429 7 Median 0.86182 1.1813 9.0759 6 0 Median 0.88994 1.1809 NaN 1 0 Median 101200000 51810000 49392000 94014000 49817000 44197000 7188200 1993400 5194900 11973 1394 12291 42994;42995;42996;42997;42998;42999;43000;43001 64569;64570;64571;64572;64573;64574;64575;64576;64577;64578;64579 64576 11 TLPHGAGHLAFSQR KIFDLRGTYQPLSTRTLPHGAGHLAFSQRG RTLPHGAGHLAFSQRGLLVAGMGDVVNIWA R T L Q R G 2 1 0 0 0 1 0 2 2 0 2 0 0 1 1 1 1 0 0 0 0 0 14 0 1490.7742 B0UZZ8;B4DNI0;O15213;B4DP15;A8K806 B0UZZ8 399 412 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2;3 0.00025339 88.282 5 1 0.86556 1.1662 25.947 5 Median 1.0674 1.4454 28.301 4 0 Linear 0.71121 0.93017 NaN 1 0 Median 88238000 42990000 45248000 85928000 41637000 44291000 2310900 1353600 957290 11974 668 12292 43002;43003;43004;43005;43006;43007 64580;64581;64582;64583;64584;64585;64586;64587 64585 8 TLPLFYGSIVR DGKIYKAGQLVKTIKTLPLFYGSIVRFFLY KTIKTLPLFYGSIVRFFLYGDHDGEVYATG K T L V R F 0 1 0 0 0 0 0 1 0 1 2 0 0 1 1 1 1 0 1 1 0 0 11 0 1264.718 A6NHR9;J3KTL8 A6NHR9 620 630 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.014256 44.309 1 0.70107 0.94991 NaN 1 Median 0.70107 0.94991 NaN 1 0 Median NaN NaN NaN 0 0 Median 8283900 4869500 3414400 8283900 4869500 3414400 0 0 0 11975 568 12293 43008 64588;64589 64588 2 TLQALQIPAAK IGLINEALDEGDAQKTLQALQIPAAKLEGV DAQKTLQALQIPAAKLEGVLAEVAQHYQDT K T L A K L 3 0 0 0 0 2 0 0 0 1 2 1 0 0 1 0 1 0 0 0 0 0 11 0 1152.6867 A4QPB0;A0A024RC65;P46940;A0A0J9YXZ5;Q6P1N4 A4QPB0 557 567 IQGAP1;hCG_1991735 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.014985 43.442 1 0.50708 0.61785 NaN 1 Median 0.50708 0.61785 NaN 1 0 Median NaN NaN NaN 0 0 Median 3486900 2437900 1049000 3486900 2437900 1049000 0 0 0 11976 287 12294 43009 64590 64590 1 TLQDIVYK QVHKTRPLLNIRSDKTLQDIVYKLVPGLFK LNIRSDKTLQDIVYKLVPGLFKNEMKRRRD K T L Y K L 0 0 0 1 0 1 0 0 0 1 1 1 0 0 0 0 1 0 1 1 0 0 8 0 978.5386 R4GMX3;Q5T8Z4;P35226;Q5T8Z6;A0A087X259;J3KT13;Q6IB93;Q5U0M5;A0A024R1V6;P35227 R4GMX3 217 224 COMMD3-BMI1;BMI1;PCGF2;COMMD3 Polycomb complex protein BMI-1;Polycomb group RING finger protein 2 yes no 2 0.035354 48.756 1 1 0.76396 1.0116 17.202 2 Median 0.89081 1.1425 NaN 1 0 Median 0.65517 0.89576 NaN 1 0 Median 9628000 4920300 4707700 6086100 3048100 3038000 3541900 1872200 1669700 11977 1835 12295 43010;43011 64591;64592;64593 64593 3 TLQELSIDGLLNR LLGNFLQWYGIFSNKTLQELSIDGLLNRYI NKTLQELSIDGLLNRYILMAFQNSEYGDDS K T L N R Y 0 1 1 1 0 1 1 1 0 1 4 0 0 0 0 1 1 0 0 0 0 0 13 0 1470.8042 Q9Y5B6;Q8N2J1;B3KY25;B3KSC0 Q9Y5B6 794 806 PAXBP1 PAX3- and PAX7-binding protein 1 yes no 2 0.00044997 99.522 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4684500 4684500 0 4684500 4684500 0 0 0 0 11978 1828 12296 43012;43013;43014 64594;64595;64596 64596 3 TLQEQLENGPNTQLAR REHVKEVQQLQGKIRTLQEQLENGPNTQLA LQEQLENGPNTQLARLQQENSILRDALNQA R T L A R L 1 1 2 0 0 3 2 1 0 0 3 0 0 0 1 0 2 0 0 0 0 0 16 0 1810.9173 A0A0A0MRV0;A7BI36;Q9P2E9;F8W7S5;A1A5C4;A0A087WVV2;A1A5C5 A0A0A0MRV0 782 797 RRBP1 Ribosome-binding protein 1 yes no 2 1.9219E-06 70.622 1 2 1.4253 1.8467 4.3711 2 Median NaN NaN NaN 0 0 Median 1.4253 1.8467 4.3711 2 0 Median 8567200 3765800 4801500 0 0 0 8567200 3765800 4801500 11979 390 12297 43015;43016;43017 64597;64598;64599;64600 64598 4 TLQEVTQLSQEAQR CFIAGADINMLAACKTLQEVTQLSQEAQRI KTLQEVTQLSQEAQRIVEKLEKSTKPIVAA K T L Q R I 1 1 0 0 0 4 2 0 0 0 2 0 0 0 0 1 2 0 0 1 0 0 14 0 1629.8322 E9KL44;P40939;B4DRH6 E9KL44 112 125 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 1.6443E-34 193.73 4 0.72674 1.0109 7.5119 3 Median 0.72674 1.0109 7.5119 3 0 Median NaN NaN NaN 0 0 Median 20232000 11040000 9191900 20232000 11040000 9191900 0 0 0 11980 1020 12298 43018;43019;43020;43021 64601;64602;64603;64604;64605;64606;64607 64601 7 TLQGHSVIR PSRPGAQGVEPQNLRTLQGHSVIRSATNTT EPQNLRTLQGHSVIRSATNTTLPHMLMSQR R T L I R S 0 1 0 0 0 1 0 1 1 1 1 0 0 0 0 1 1 0 0 1 0 0 9 0 1009.5669 A0A0U1RRM1;Q8WXI9;B3KSZ4 A0A0U1RRM1 241 249 GATAD2B Transcriptional repressor p66-beta yes no 2 0.011621 63.534 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3870900 0 3870900 0 0 0 3870900 0 3870900 11981 488 12299 43022 64608 64608 1 TLQLDEDVLCVSYSPNQK DENSTQKRLSVKQTRTLQLDEDVLCVSYSP LDEDVLCVSYSPNQKLLAVSLLDCTVKIFY R T L Q K L 0 0 1 2 1 2 1 0 0 0 3 1 0 0 1 2 1 0 1 2 0 0 18 0 2108.0096 Q5TDG3;Q9UNX4;B3KMW5;Q59GA8 Q5TDG3 545 562 WDR3 WD repeat-containing protein 3 yes no 2 8.7153E-62 269.78 4 0.8427 1.051 3.1871 4 Median 0.8427 1.051 3.1871 4 0 Median NaN NaN NaN 0 0 Median 66786000 35567000 31219000 66786000 35567000 31219000 0 0 0 11982 1576 12300 43023;43024;43025;43026 64609;64610;64611;64612;64613;64614;64615;64616;64617 64610 9 TLQLDNNFEVK SSVKLWDLRKLKNFKTLQLDNNFEVKSLIF KNFKTLQLDNNFEVKSLIFDQSGTYLALGG K T L V K S 0 0 2 1 0 1 1 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 11 0 1319.6721 Q9UMS4 Q9UMS4 429 439 PRPF19 Pre-mRNA-processing factor 19 yes yes 2 2.0003E-12 134.23 4 2 1.0588 1.4532 38.12 4 Median 0.82183 1.0334 5.9017 2 0 Median 1.3357 1.9939 2.419 2 0 Median 55262000 33473000 21788000 37349000 26487000 10862000 17912000 6985900 10927000 11983 1795 12301 43027;43028;43029;43030;43031;43032 64618;64619;64620;64621;64622;64623;64624;64625 64623 8 TLQQQTFK ______________________________ ______________________________ K T L F K I 0 0 0 0 0 3 0 0 0 0 1 1 0 1 0 0 2 0 0 0 0 0 8 0 992.5291 P54727;Q53F10;B4DEA3;Q5W0S5;K7ENJ0;K7ELW1;A8K1J3;A0A024R7G8;P54725 P54727 7 14 RAD23B;RAD23A UV excision repair protein RAD23 homolog B;UV excision repair protein RAD23 homolog A yes no 2 0.0055162 89.55 1 2 0.72456 0.91356 7.0142 3 Plateau 0.72456 0.91356 NaN 1 0 Median 0.57812 0.86045 8.6304 2 0 Median 30940000 18857000 12083000 16970000 10089000 6881500 13969000 8767700 5201400 11984 1374 12302 43033;43034;43035 64626;64627;64628;64629 64626 4 TLQTISLLGYMK NGINGILADEMGLGKTLQTISLLGYMKHYR LGKTLQTISLLGYMKHYRNIPGPHMVLVPK K T L M K H 0 0 0 0 0 1 0 1 0 1 3 1 1 0 0 1 2 0 1 0 0 0 12 0 1366.753 O60264;B7ZAX9;B4DZC0 O60264 212 223 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 2 2.2299E-05 87.298 2 1.9639 2.9739 5.3986 2 Median NaN NaN NaN 0 0 Median 1.9639 2.9739 5.3986 2 0 Median 25315000 9276700 16038000 0 0 0 25315000 9276700 16038000 11985 1189 12303 43036;43037 64630;64631 64631 435 2 TLSDDLDEAAK QMVAAKDVVMEPTMKTLSDDLDEAAKEFQE PTMKTLSDDLDEAAKEFQEKHKKEVGKLKS K T L A K E 2 0 0 3 0 0 1 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 11 0 1176.551 Q9H0A0;A0A087WV29 Q9H0A0 932 942 NAT10 N-acetyltransferase 10 yes no 2 0.00011685 92.239 4 2 0.77542 1.0606 7.1077 6 Median 0.83531 1.0688 8.7805 4 0 Median 0.65885 1.0438 3.7802 2 0 Median 459700000 257330000 202360000 268380000 142290000 126090000 191320000 115050000 76271000 11986 1730 12304 43038;43039;43040;43041;43042;43043 64632;64633;64634;64635;64636;64637;64638;64639;64640;64641;64642 64637 11 TLSDYNIQK QQRLIFAGKQLEDGRTLSDYNIQKESTLHL QLEDGRTLSDYNIQKESTLHLVLRLRGGAK R T L Q K E 0 0 1 1 0 1 0 0 0 1 1 1 0 0 0 1 1 0 1 0 0 0 9 0 1080.5451 Q5RKT7;B2RDW1;P62979;Q8WYN9;J3QS39;J3QTR3;F5H6Q2;Q3MIH3;F5GYU3;F5H2Z3;F5H265;Q5UGI3;B4DV12;F5H388;F5H747;F5GXK7;J3QKN0;Q5U5U6;Q5PY61;Q96C32;Q96MH4;L8B4I8;L8B196;L8B4R0;A8K674;L8B4Z6;L8B4M0;L8B4J3;P62987;P0CG47;P0CG48;M0R1V7;Q49A90;Q9UFQ0;Q96H31;Q66K58;Q59EM9;M0R1M6;M0R2S1 Q5RKT7 55 63 RPS27A;HEL112;UBB;UBC;UBA52;UbC;DKFZp434K0435 Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 1;2 5.8197E-05 127.46 5 2 0.72646 1.0359 8.47 6 Median 0.73466 0.9696 7.7828 4 0 Median 0.71152 1.1165 2.2436 2 0 Median 2444100000 1421200000 1023000000 647460000 380560000 266910000 1796700000 1040600000 756070000 11987 742 12305 43044;43045;43046;43047;43048;43049;43050 64643;64644;64645;64646;64647;64648;64649;64650;64651;64652;64653;64654;64655;64656;64657;64658;64659 64650 17 TLSFSSDNIAVLSAAADSIK RTSRITIGGHRSDVRTLSFSSDNIAVLSAA SDNIAVLSAAADSIKIWNRSTLQCIRTMTC R T L I K I 4 0 1 2 0 0 0 0 0 2 2 1 0 1 0 5 1 0 0 1 0 0 20 0 2009.0317 Q5TDG3;Q9UNX4;B3KMW5 Q5TDG3 420 439 WDR3 WD repeat-containing protein 3 yes no 2 6.6299E-47 228.76 4 2 0.85761 1.1169 3.0858 6 Median 0.8735 1.098 2.6647 4 0 Median 0.71566 1.1429 0.95305 2 0 Median 222960000 124270000 98691000 132430000 72784000 59642000 90532000 51484000 39049000 11988 1576 12306 43051;43052;43053;43054;43055;43056 64660;64661;64662;64663;64664;64665;64666;64667;64668;64669;64670;64671;64672 64665 13 TLSGAQDSEAAFAK PPTTIGMMTLKAAFKTLSGAQDSEAAFAKL KTLSGAQDSEAAFAKLDQKDLVLPTQALPA K T L A K L 4 0 0 1 0 1 1 1 0 0 1 1 0 1 0 2 1 0 0 0 0 0 14 0 1394.6678 Q15554;H3BR06;U3KQ35;J3KSZ6;H3BTA7 Q15554 336 349 TERF2 Telomeric repeat-binding factor 2 yes no 2 8.5264E-05 71.555 1 1 1.0704 1.3569 NaN 1 Median 1.0704 1.3569 NaN 1 0 Median NaN NaN NaN 0 0 Median 9197000 5221500 3975500 6035400 2059900 3975500 3161600 3161600 0 11989 1513 12307 43057;43058 64673;64674;64675 64673 3 TLSLALDNPNEEVAEVK SPFLCFGDVLLGASRTLSLALDNPNEEVAE SLALDNPNEEVAEVKISHFPAADLGFSVSQ R T L V K I 2 0 2 1 0 0 3 0 0 0 3 1 0 0 1 1 1 0 0 2 0 0 17 0 1840.9418 Q8IZT6;B3KWI2;Q4G1H2;Q4G1H0;A0A087WV76 Q8IZT6 62 78 ASPM Abnormal spindle-like microcephaly-associated protein yes no 2 1.8164E-09 100.19 4 0.88692 1.145 8.4256 4 Median 0.88692 1.145 8.4256 4 0 Median NaN NaN NaN 0 0 Median 15938000 8597600 7340300 15938000 8597600 7340300 0 0 0 11990 1631 12308 43059;43060;43061;43062 64676;64677;64678;64679 64679 3 TLSPTPASATAPTSQGIPTSDEESTPKK EQHVTQLMSTEPLPRTLSPTPASATAPTSQ SQGIPTSDEESTPKKSKARILESITVSSLM R T L K K S 3 0 0 1 0 1 2 1 0 1 1 2 0 0 5 5 6 0 0 0 0 0 28 1 2798.3822 Q9NQS7;B3KPD3 Q9NQS7 195 222 INCENP Inner centromere protein yes no 3 9.1609E-07 73.649 5 1 0.71711 0.86767 23.093 3 Median 0.72065 0.8749 1.1733 2 0 Median 0.37561 0.58662 NaN 1 0 Median 21600000 11457000 10143000 14068000 5560400 8508000 7531300 5896400 1634900 11991 1752 12309 43063;43064;43065;43066;43067;43068 64680;64681;64682;64683;64684;64685;64686;64687;64688 64682 9 TLSQGESQTSEHELFLDTK LLEMAEMIAEDEEKKTLSQGESQTSEHELF GESQTSEHELFLDTKIFEKDQGSTYSGDLE K T L T K I 0 0 0 1 0 2 3 1 1 0 3 1 0 1 0 3 3 0 0 0 0 0 19 0 2149.0175 Q5VZL5;H7C1I7 Q5VZL5 1062 1080 ZMYM4 Zinc finger MYM-type protein 4 yes no 3 0.001214 60.093 3 1 0.96317 1.2219 22.978 4 Median 0.96729 1.2272 13.241 3 0 Plateau 1.1576 1.7088 NaN 1 0 Median 25766000 12328000 13437000 18851000 9140500 9710900 6914400 3187800 3726600 11992 1580 12310 43069;43070;43071;43072 64689;64690;64691;64692 64689 4 TLSYLLPAIVHINHQPFLER SGLDMVGVAQTGSGKTLSYLLPAIVHINHQ LPAIVHINHQPFLERGDGPICLVLAPTREL K T L E R G 1 1 1 0 0 1 1 0 2 2 4 0 0 1 2 1 1 0 1 1 0 0 20 0 2360.3005 B4DN41;J3KTA4;B5BUE6;P17844;Q7Z2V5;Q59E92;J3QRQ7;J3QRN5 B4DN41 134 153 DDX5;DKFZp686J01190 Probable ATP-dependent RNA helicase DDX5 yes no 3;4 0.00035532 57.173 6 1 0.50581 0.70368 48.627 4 Median 0.43499 0.59226 28.537 3 0 Median 1.047 1.449 NaN 1 0 Median 41100000 28568000 12533000 30322000 24730000 5592200 10778000 3837600 6940700 11993 833 12311 43073;43074;43075;43076;43077;43078;43079 64693;64694;64695;64696;64697;64698;64699;64700;64701;64702;64703;64704 64701 12 TLTAVHDAILEDLVFPSEIVGK RKSRTKNKQKRPRSRTLTAVHDAILEDLVF AILEDLVFPSEIVGKRIRVKLDGSRLIKVH R T L G K R 2 0 0 2 0 0 2 1 1 2 3 1 0 1 1 1 2 0 0 3 0 0 22 0 2366.2733 P62081;B5MCP9;Q59FS3 P62081 121 142 RPS7 40S ribosomal protein S7 yes no 2;3 1.7234E-26 147.49 16 2 0.89197 1.1517 15.837 14 Median 0.9036 1.1872 9.7792 12 0 Median 0.50358 0.79653 7.0467 2 0 Median 1811800000 934060000 877700000 1511200000 743100000 768090000 300570000 190960000 109610000 11994 1395 12312 43080;43081;43082;43083;43084;43085;43086;43087;43088;43089;43090;43091;43092;43093;43094;43095;43096;43097 64705;64706;64707;64708;64709;64710;64711;64712;64713;64714;64715;64716;64717;64718;64719;64720;64721;64722;64723;64724;64725;64726;64727;64728;64729;64730;64731;64732;64733;64734;64735;64736;64737 64716 33 TLTAVHDAILEDLVFPSEIVGKR RKSRTKNKQKRPRSRTLTAVHDAILEDLVF ILEDLVFPSEIVGKRIRVKLDGSRLIKVHL R T L K R I 2 1 0 2 0 0 2 1 1 2 3 1 0 1 1 1 2 0 0 3 0 0 23 1 2522.3744 P62081;B5MCP9;Q59FS3 P62081 121 143 RPS7 40S ribosomal protein S7 yes no 3;4 2.5408E-12 99.059 7 3 0.96672 1.2848 36.924 9 Median 0.99378 1.2923 9.6022 7 0 Median 0.34761 0.58355 7.6855 2 0 Median 282710000 194770000 87939000 111620000 57758000 53862000 171090000 137010000 34077000 11995 1395 12313 43098;43099;43100;43101;43102;43103;43104;43105;43106;43107 64738;64739;64740;64741;64742;64743;64744;64745;64746;64747;64748;64749;64750 64750 12 TLTELILDAQEHVK KLKWVEISNEVRKFRTLTELILDAQEHVKN RTLTELILDAQEHVKNPYKGKKLKKHPDFP R T L V K N 1 0 0 1 0 1 2 0 1 1 3 1 0 0 0 0 2 0 0 1 0 0 14 0 1608.8723 E9PKP7;P17480;A8K962;B4DNQ1;Q05BZ1;Q9BQR2 E9PKP7 84 97 UBTF Nucleolar transcription factor 1 yes no 2;3 1.6879E-09 142.07 7 6 0.85006 1.0955 16.873 13 Median 0.86065 1.0935 10.872 7 0 Median 0.7533 1.2203 22.458 6 0 Median 488120000 274860000 213260000 278140000 153280000 124870000 209980000 121590000 88392000 11996 1039 12314 43108;43109;43110;43111;43112;43113;43114;43115;43116;43117;43118;43119;43120 64751;64752;64753;64754;64755;64756;64757;64758;64759;64760;64761;64762;64763;64764;64765;64766;64767;64768;64769;64770;64771;64772;64773;64774;64775 64758 24 TLTGTVIDSGDGVTHVIPVAEGYVIGSCIK LALAASWTSRQVGERTLTGTVIDSGDGVTH VIPVAEGYVIGSCIKHIPIAGRDITYFIQQ R T L I K H 1 0 0 2 1 0 1 5 1 4 1 1 0 0 1 2 4 0 1 5 0 0 30 0 3057.5693 A0A024RAI1;P61158;B4DXW1;B4DT29;B4DTI0 A0A024RAI1 162 191 ACTR3 Actin-related protein 3 yes no 3 8.2321E-33 123.68 5 1.1276 1.3845 17.167 4 Median 1.1276 1.3845 17.167 4 0 Median NaN NaN NaN 0 0 Median 71446000 31162000 40284000 71446000 31162000 40284000 0 0 0 11997 243 12315 43121;43122;43123;43124;43125 64776;64777;64778;64779;64780;64781;64782 64780 7 TLTLETDQSTSGCR GADQTGLFWKCLPSRTLTLETDQSTSGCRS RTLTLETDQSTSGCRSSRERIIIMCCANAT R T L C R S 0 1 0 1 1 1 1 1 0 0 2 0 0 0 0 2 4 0 0 0 0 0 14 0 1567.7148 V9HWD1;B3KNK0;Q4W5G0 V9HWD1 190 203 HEL106;TIGD2 Tigger transposable element-derived protein 2 yes no 2 3.3773E-05 115 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 11998 759 12316 43126 64783 64783 1 TLTSCFLSCVVCVEGIVTK VGLEGSFGSKHVSPRTLTSCFLSCVVCVEG CFLSCVVCVEGIVTKCSLVRPKVVRSVHYC R T L T K C 0 0 0 0 3 0 1 1 0 1 2 1 0 1 0 2 3 0 0 4 0 0 19 0 2172.0629 Q8NHX6;Q53HJ4;B2R7C5;A0A0S2Z4T1;A0A0S2Z492;P25205;B4DUQ9;J3KQ69;B4DS46 Q8NHX6 115 133 HCC5;MCM3 DNA helicase;DNA replication licensing factor MCM3 yes no 2 0.027076 38.799 1 0.57351 0.71463 NaN 1 Median 0.57351 0.71463 NaN 1 0 Median NaN NaN NaN 0 0 Median 2456200 1401400 1054800 2456200 1401400 1054800 0 0 0 11999 463 12317 43127 64784 64784 1 TLTSSGQVTLGDACSASTSR YIKVWDIRDSAKCIRTLTSSGQVTLGDACS GQVTLGDACSASTSRTVAIPSGENQINQIA R T L S R T 2 1 0 1 1 1 0 2 0 0 2 0 0 0 0 5 4 0 0 1 0 0 20 0 1997.9324 Q68D13;H0YI78;H0YHT2;A0A1B0GV47;Q7Z4S6 Q68D13 403 422 DKFZp779C159;KIF21A Kinesin-like protein KIF21A yes no 2 0.0023433 98.654 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12000 519 12318 43128 64785 64785 1 TLTVEVSVETIR EREELNLTANRLMGRTLTVEVSVETIRNPQ MGRTLTVEVSVETIRNPQQQESLKLATRII R T L I R N 0 1 0 0 0 0 2 0 0 1 1 0 0 0 0 1 3 0 0 3 0 0 12 0 1345.7453 B3KN59;B3KM36;O95816 B3KN59 91 102 BAG2 BAG family molecular chaperone regulator 2 yes no 2 0.00056981 72.006 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5370600 5370600 0 5370600 5370600 0 0 0 0 12001 751 12319 43129;43130 64786;64787 64787 2 TLTVEVSVETIRNPQQQESLK EREELNLTANRLMGRTLTVEVSVETIRNPQ SVETIRNPQQQESLKLATRIIDEVVNKFLD R T L L K L 0 1 1 0 0 3 3 0 0 1 2 1 0 0 1 2 3 0 0 3 0 0 21 1 2398.2704 B3KN59;B3KM36;O95816 B3KN59 91 111 BAG2 BAG family molecular chaperone regulator 2 yes no 3 3.945E-19 129.32 4 0.58668 0.76538 17.692 4 Median 0.58668 0.76538 17.692 4 0 Median NaN NaN NaN 0 0 Median 45564000 27866000 17698000 45564000 27866000 17698000 0 0 0 12002 751 12320 43131;43132;43133;43134 64788;64789;64790;64791;64792;64793;64794;64795;64796;64797;64798 64791 11 TLVAVERPLDDIIAQLPPPIK KIYKPLLFMDLLDERTLVAVERPLDDIIAQ RPLDDIIAQLPPPIKKKKFGT_________ R T L I K K 2 1 0 2 0 1 1 0 0 3 3 1 0 0 4 0 1 0 0 2 0 0 21 1 2297.3359 Q969X6;H3BSH7;A0A0J9YWM9;A0A0J9YXV4;H3BRM8 Q969X6 660 680 CIRH1A Cirhin yes no 3 2.2935E-15 144.4 5 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 126230000 126230000 0 59966000 59966000 0 66261000 66261000 0 12003 1680 12321 43135;43136;43137;43138;43139;43140;43141 64799;64800;64801;64802;64803;64804;64805;64806 64799 8 TLVAVERPLDDIIAQLPPPIKK KIYKPLLFMDLLDERTLVAVERPLDDIIAQ PLDDIIAQLPPPIKKKKFGT__________ R T L K K K 2 1 0 2 0 1 1 0 0 3 3 2 0 0 4 0 1 0 0 2 0 0 22 2 2425.4308 Q969X6;H3BSH7;A0A0J9YWM9;A0A0J9YXV4;H3BRM8 Q969X6 660 681 CIRH1A Cirhin yes no 3 9.684E-05 111.82 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12004 1680 12322 43142;43143 64807;64808 64808 2 TLVEDLFADK YGFAIHHAGMTRVDRTLVEDLFADKHIQVL TRVDRTLVEDLFADKHIQVLVSTATLAWGV R T L D K H 1 0 0 2 0 0 1 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 10 0 1149.5918 O75643;A4FU77;Q9H8B9 O75643 795 804 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0020512 109.44 4 1 0.64462 0.80877 29.335 5 Median 0.6319 0.78296 11.119 4 0 Median 0.96719 1.463 NaN 1 0 Median 74279000 42161000 32118000 65310000 37784000 27526000 8969000 4377600 4591500 12005 1206 12323 43144;43145;43146;43147;43148 64809;64810;64811;64812;64813;64814;64815;64816;64817 64809 9 TLVQNNCLTRPNIYLIPDIDLK SRMDRNVEMFMNIEKTLVQNNCLTRPNIYL LTRPNIYLIPDIDLKLANKLKDIIKRHQGT K T L L K L 0 1 3 2 1 1 0 0 0 3 4 1 0 0 2 0 2 0 1 1 0 0 22 1 2612.3996 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q05BW5 Q58EY4 158 179 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 3 2.7401E-17 111.83 4 0.76027 0.99167 12.659 4 Linear 0.76027 0.99167 12.659 4 0 Linear NaN NaN NaN 0 0 Median 53176000 32658000 20518000 53176000 32658000 20518000 0 0 0 12006 1549 12324 43149;43150;43151;43152 64818;64819;64820;64821;64822;64823;64824;64825;64826;64827 64826 10 TLVTQNSGVEALIHAILR TGTLSNLTCNNSKNKTLVTQNSGVEALIHA TQNSGVEALIHAILRAGDKDDITEPAVCAL K T L L R A 2 1 1 0 0 1 1 1 1 2 3 0 0 0 0 1 2 0 0 2 0 0 18 0 1934.0949 A0A0S2Z487;A0A024R1X8;P14923 A0A0S2Z487 427 444 JUP Junction plakoglobin yes no 3 4.413E-06 62.377 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3746400 3746400 0 3746400 3746400 0 0 0 0 12007 73 12325 43153 64828 64828 1 TLYEHYSGGESHNSSSSK LVGLNSPNSILKAAKTLYEHYSGGESHNSS EHYSGGESHNSSSSKTFEKKRGKK______ K T L S K T 0 0 1 0 0 0 2 2 2 0 1 1 0 0 0 6 1 0 2 0 0 0 18 0 1968.845 P33981 P33981 831 848 TTK Dual specificity protein kinase TTK yes yes 3 0.0085602 48.423 1 1.029 1.3291 NaN 1 Median 1.029 1.3291 NaN 1 0 Median NaN NaN NaN 0 0 Median 865450 503860 361590 865450 503860 361590 0 0 0 12008 1316 12326 43154 64829;64830 64829 2 TLYFFIAGR VRGHFYGHLDFNLDKTLYFFIAGRYEFSNK DFNLDKTLYFFIAGRYEFSNKGADVFLEAL K T L G R Y 1 1 0 0 0 0 0 1 0 1 1 0 0 2 0 0 1 0 1 0 0 0 9 0 1086.5862 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6 P13807 323 331 GYS1 Glycogen [starch] synthase, muscle yes no 2 0.0090615 86.953 4 0.75836 1.0202 6.1064 3 Median 0.75836 1.0202 6.1064 3 0 Median NaN NaN NaN 0 0 Median 25293000 12315000 12977000 25293000 12315000 12977000 0 0 0 12009 1265 12327 43155;43156;43157;43158 64831;64832;64833;64834;64835;64836;64837 64835 7 TLYGFGG VTAMDVVYALKRQGRTLYGFGG________ YALKRQGRTLYGFGG_______________ R T L G G - 0 0 0 0 0 0 0 3 0 0 1 0 0 1 0 0 1 0 1 0 0 0 7 0 713.33844 B2R4R0;P62805;Q0VAS5 B2R4R0 97 103 HIST1H4H;HIST1H4A Histone H4 yes no 1 0.002464 136.29 33 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27133000000 0 0 16566000000 0 0 10567000000 0 0 12010 686 12328 43159;43160;43161;43162;43163;43164;43165;43166;43167;43168;43169;43170;43171;43172;43173;43174;43175;43176;43177;43178;43179;43180;43181;43182;43183;43184;43185;43186;43187;43188;43189;43190;43191;43192;43193;43194;43195 64838;64839;64840;64841;64842;64843;64844;64845;64846;64847;64848;64849;64850;64851;64852;64853;64854;64855;64856;64857;64858;64859;64860;64861;64862;64863;64864;64865;64866;64867;64868;64869;64870;64871;64872;64873;64874;64875;64876;64877;64878;64879;64880;64881;64882;64883;64884 64855 47 TLYVEEVVPNVIEPSFGLGR FQLTKDMINVKRFQKTLYVEEVVPNVIEPS EVVPNVIEPSFGLGRIMYTVFEHTFHVREG K T L G R I 0 1 1 0 0 0 3 2 0 1 2 0 0 1 2 1 1 0 1 4 0 0 20 0 2217.1681 A0A090N8G0;P41250 A0A090N8G0 510 529 GARS Glycine--tRNA ligase yes no 2 4.6764E-19 140.33 5 0.76591 1.0361 18.83 2 Median 0.76591 1.0361 18.83 2 0 Median NaN NaN NaN 0 0 Median 24788000 10871000 13917000 24788000 10871000 13917000 0 0 0 12011 382 12329 43196;43197;43198;43199;43200 64885;64886;64887;64888;64889;64890;64891 64885 7 TMTELEIDMNQR SHFGIDMLKMQKTDKTMTELEIDMNQRIGE TDKTMTELEIDMNQRIGEWELIQESGVPLK K T M Q R I 0 1 1 1 0 1 2 0 0 1 1 0 2 0 0 0 2 0 0 0 0 0 12 0 1479.6698 A0A140VJZ1;P45974 A0A140VJZ1 292 303 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 0.0057772 46.352 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3588600 0 3588600 0 0 0 3588600 0 3588600 12012 505 12330 43201;43202 64892;64893 64893 176;177 2 TNAENEFVTIK VEDYRNKYEDEINKRTNAENEFVTIKKDVD INKRTNAENEFVTIKKDVDGAYMTKVDLQA R T N I K K 1 0 2 0 0 0 2 0 0 1 0 1 0 1 0 0 2 0 0 1 0 0 11 0 1264.6299 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 278 288 KRT1 Keratin, type II cytoskeletal 1 no no 2 2.8577E-07 136.36 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 434990000 434990000 0 263790000 263790000 0 171200000 171200000 0 + 12013 1113;1114 12331 43203;43204;43205;43206 64894;64895;64896;64897;64898;64899;64900;64901;64902 64901 9 TNAENEFVTIKK VEDYRNKYEDEINKRTNAENEFVTIKKDVD NKRTNAENEFVTIKKDVDGAYMTKVDLQAK R T N K K D 1 0 2 0 0 0 2 0 0 1 0 2 0 1 0 0 2 0 0 1 0 0 12 1 1392.7249 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 278 289 KRT1 Keratin, type II cytoskeletal 1 no no 2;3 1.243E-57 225.22 4 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 543610000 543610000 0 488940000 488940000 0 54669000 54669000 0 + 12014 1113;1114 12332 43207;43208;43209;43210;43211 64903;64904;64905;64906;64907 64903 5 TNAFLVATSAPQAVLYNDR LYVAAAMHDYDHPGRTNAFLVATSAPQAVL LVATSAPQAVLYNDRSVLENHHAAAAWNLF R T N D R S 4 1 2 1 0 1 0 0 0 0 2 0 0 1 1 1 2 0 1 2 0 0 19 0 2050.0484 Q14432 Q14432 844 862 PDE3A cGMP-inhibited 3,5-cyclic phosphodiesterase A yes yes 2 6.9486E-07 106.42 2 0.26918 0.36361 NaN 1 Median 0.26918 0.36361 NaN 1 0 Median NaN NaN NaN 0 0 Median 3833200 3505300 327900 3833200 3505300 327900 0 0 0 12015 1487 12333 43212;43213 64908;64909;64910 64909 3 TNCCDQCGAYIYTK SDSCFSKFRANKGLKTNCCDQCGAYIYTKT KTNCCDQCGAYIYTKTGSPGPELLFHEGQQ K T N T K T 1 0 1 1 3 1 0 1 0 1 0 1 0 0 0 0 2 0 2 0 0 0 14 0 1752.6906 A6NHN7;A6NHB5;Q14202;A8K3Z7;A6NL54 A6NHN7 450 463 ZMYM3 Zinc finger MYM-type protein 3 yes no 2 5.4514E-05 96.604 3 0.65359 0.83906 15.514 2 Median 0.65359 0.83906 15.514 2 0 Median NaN NaN NaN 0 0 Median 12595000 7281300 5313900 12595000 7281300 5313900 0 0 0 12016 565 12334 43214;43215;43216 64911;64912;64913;64914;64915;64916 64912 6 TNEGVIEFR RQAGEVTYADAHKERTNEGVIEFRSYSDMK DAHKERTNEGVIEFRSYSDMKRALDKLDGT R T N F R S 0 1 1 0 0 0 2 1 0 1 0 0 0 1 0 0 1 0 0 1 0 0 9 0 1063.5298 Q59GY3;V9HVZ0;A8K588;Q13247 Q59GY3 180 188 HEL-S-91;SRSF6 Serine/arginine-rich splicing factor 6 yes no 2 0.0093087 64.654 1 2 0.97413 1.3767 11.612 2 Median NaN NaN NaN 0 0 Median 0.97413 1.3767 11.612 2 0 Median 17851000 9218500 8632600 0 0 0 17851000 9218500 8632600 12017 615 12335 43217;43218;43219 64917;64918;64919;64920;64921 64920 5 TNFFIQLVRPGVAQPEDTVQFR YPLYRLGGPQLRVFRTNFFIQLVRPGVAQP VRPGVAQPEDTVQFRIPMEMTRVDLRNYLE R T N F R I 1 2 1 1 0 3 1 1 0 1 1 0 0 3 2 0 2 0 0 3 0 0 22 1 2561.3391 H7C2P7;B2R9J4;A0A024RCB2;A6NJD9;A8MVT4;A8MYK1;Q16540 H7C2P7 17 38 MRPL23 39S ribosomal protein L23, mitochondrial yes no 3 3.2785E-05 55.588 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5539600 0 5539600 5539600 0 5539600 0 0 0 12018 292 12336 43220 64922 64922 1 TNGKEPELLEPIPYEFMA LKRQPAPPREAHFVRTNGKEPELLEPIPYE KEPELLEPIPYEFMA_______________ R T N M A - 1 0 1 0 0 0 4 1 0 1 2 1 1 1 3 0 1 0 1 0 0 0 18 1 2077.0078 Q6IAX2;P46778;Q59GK9 Q6IAX2 143 160 RPL21 60S ribosomal protein L21 yes no 2 4.9805E-05 117.7 5 0.82157 1.0501 5.8893 4 Median 0.82157 1.0501 5.8893 4 0 Median NaN NaN NaN 0 0 Median 32691000 20419000 12272000 32691000 20419000 12272000 0 0 0 12019 1345 12337;12338 43221;43222;43223;43224;43225 64923;64924;64925;64926;64927;64928;64929;64930 64926 586 8 TNHIGHTGYLNTVTVSPDGSLCASGGK DKLVKVWNLANCKLKTNHIGHTGYLNTVTV VTVSPDGSLCASGGKDGQAMLWDLNEGKHL K T N G K D 1 0 2 1 1 0 0 5 2 1 2 1 0 0 1 3 4 0 1 2 0 0 27 0 2742.3031 E9KL35;P63244;D6R9Z1;D6R9L0;D6RFX4;J3KPE3;H0Y8W2;B4DVD2;D6RHH4;H0YAM7;D6RAC2;D6REE5;H0Y8R5 E9KL35 186 212 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 3;4 7.4165E-48 134.2 8 2 0.92222 1.1825 40.022 10 Median 0.90832 1.1723 8.1545 8 0 Median 1.9561 2.9161 3.4166 2 0 Median 325500000 171350000 154150000 308640000 165180000 143460000 16864000 6172900 10691000 12020 1019 12339 43226;43227;43228;43229;43230;43231;43232;43233;43234;43235 64931;64932;64933;64934;64935;64936;64937;64938;64939;64940;64941;64942;64943;64944;64945;64946 64937 16 TNHIYVSSDDIK EWRVRAISAANLHLRTNHIYVSSDDIKETG HLRTNHIYVSSDDIKETGYTYILPKNVLKK R T N I K E 0 0 1 2 0 0 0 0 1 2 0 1 0 0 0 2 1 0 1 1 0 0 12 0 1390.6729 Q6P2Q9;B4DK16 Q6P2Q9 2087 2098 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.001697 76.843 2 2 0.66634 0.84396 NaN 1 Median 0.66634 0.84396 NaN 1 0 Median NaN NaN NaN 0 0 Median 26009000 9166200 16842000 20312000 9166200 11146000 5696100 0 5696100 12021 1592 12340 43236;43237;43238;43239 64947;64948;64949;64950 64948 4 TNIIPVIEDARHPHK SHRSGRDLINLAKKRTNIIPVIEDARHPHK TNIIPVIEDARHPHKYRMLIAMVDVIFADV R T N H K Y 1 1 1 1 0 0 1 0 2 3 0 1 0 0 2 0 1 0 0 1 0 0 15 1 1738.9479 Q96BS4;P22087;M0R299;M0QXL5;M0R2Q4;B4DLD4;M0R0P1 Q96BS4 147 161 FBL rRNA 2-O-methyltransferase fibrillarin yes no 3 0.02684 48.214 3 0.98523 1.2815 33.954 3 Plateau 0.98523 1.2815 33.954 3 0 Plateau NaN NaN NaN 0 0 Median 17854000 8349400 9504500 17854000 8349400 9504500 0 0 0 12022 1288 12341 43240;43241;43242 64951;64952;64953 64952 3 TNIIPVLEDAR SHRAGRDLVNVAKKRTNIIPVLEDARHPLK AKKRTNIIPVLEDARHPLKYRMLIGMVDVI R T N A R H 1 1 1 1 0 0 1 0 0 2 1 0 0 0 1 0 1 0 0 1 0 0 11 0 1239.6823 A6NHQ2 A6NHQ2 220 230 FBLL1 rRNA/tRNA 2-O-methyltransferase fibrillarin-like protein 1 yes yes 2 0.001492 109.83 3 2 0.69366 0.95113 9.3634 5 Median 0.71836 0.97779 2.9739 3 0 Median 0.50198 0.82946 1.6537 2 0 Median 961250000 596250000 364990000 508730000 289040000 219690000 452510000 307210000 145300000 12023 566 12342 43243;43244;43245;43246;43247 64954;64955;64956;64957;64958;64959;64960;64961;64962;64963;64964 64957 11 TNILNSEQVIVEVLPNQPVK KVGTYCIQFGFMMDKTNILNSEQVIVEVLP SEQVIVEVLPNQPVKLVPKIKPPTPAVSNV K T N V K L 0 0 3 0 0 2 2 0 0 2 2 1 0 0 2 1 1 0 0 4 0 0 20 0 2233.2318 A6NHR9;J3KTL8 A6NHR9 1471 1490 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 1.4647E-97 252.12 4 0.84318 1.0861 7.4867 4 Median 0.84318 1.0861 7.4867 4 0 Median NaN NaN NaN 0 0 Median 22315000 11863000 10453000 22315000 11863000 10453000 0 0 0 12024 568 12343 43248;43249;43250;43251 64965;64966;64967;64968;64969;64970;64971;64972;64973;64974;64975;64976 64966 12 TNISEVNAATLLLGIENQHK WWLNFILTPDDFTVKTNISEVNAATLLLGI VNAATLLLGIENQHKISVPRAPTKEEMSLR K T N H K I 2 0 3 0 0 1 2 1 1 2 3 1 0 0 0 1 2 0 0 1 0 0 20 0 2164.1488 Q8IZT6;B3KWI2 Q8IZT6 720 739 ASPM Abnormal spindle-like microcephaly-associated protein yes no 3 5.6684E-05 75.334 3 0.9867 1.2517 6.5719 3 Median 0.9867 1.2517 6.5719 3 0 Median NaN NaN NaN 0 0 Median 25762000 12398000 13365000 25762000 12398000 13365000 0 0 0 12025 1631 12344 43252;43253;43254 64977;64978;64979;64980;64981 64980 5 TNLANVVLLLK YKNELLTTTVPEIQRTNLANVVLLLKSLGV EIQRTNLANVVLLLKSLGVQDLLQFHFMDP R T N L K S 1 0 2 0 0 0 0 0 0 0 4 1 0 0 0 0 1 0 0 2 0 0 11 0 1196.7493 B4DM30;B4DET0;A8K6G9;Q92620;B4DN69 B4DM30 562 572 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes no 2 0.00019052 93.598 4 0.55717 0.70185 20.278 2 Median 0.55717 0.70185 20.278 2 0 Median NaN NaN NaN 0 0 Median 6873300 5485000 1388300 6873300 5485000 1388300 0 0 0 12026 624 12345 43255;43256;43257;43258 64982;64983;64984;64985;64986;64987 64985 6 TNLDESDVQPVK GGVGFDINCGVRLLRTNLDESDVQPVKEQL LLRTNLDESDVQPVKEQLAQAMFDHIPVGV R T N V K E 0 0 1 2 0 1 1 0 0 0 1 1 0 0 1 1 1 0 0 2 0 0 12 0 1343.6569 Q9Y3I0;B4DNA0;B4DNG5 Q9Y3I0 129 140 RTCB tRNA-splicing ligase RtcB homolog yes no 2 1.0896E-40 219.5 4 2 0.69728 0.90578 13.313 6 Median 0.68549 0.84873 6.5858 4 0 Median 0.72417 1.0939 3.5348 2 0 Median 128200000 72692000 55513000 96871000 53923000 42948000 31333000 18768000 12565000 12027 1819 12346 43259;43260;43261;43262;43263;43264 64988;64989;64990;64991;64992;64993;64994;64995;64996;64997;64998;64999;65000;65001;65002 64990 15 TNLDLGPTAPSLEK KTKILIKKGRGNLEKTNLDLGPTAPSLEKE KTNLDLGPTAPSLEKEKTLCLSTPSSSTVK K T N E K E 1 0 1 1 0 0 1 1 0 0 3 1 0 0 2 1 2 0 0 0 0 0 14 0 1454.7617 Q03164;E9PR05;Q9HB80 Q03164 972 985 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 2.4727E-05 112.84 4 2 1.1207 1.4522 3.5193 5 Median 1.1227 1.447 4.4331 3 0 Median 0.97782 1.4842 3.0818 2 0 Median 62092000 31703000 30389000 27704000 15672000 12032000 34388000 16031000 18358000 12028 1438 12347 43265;43266;43267;43268;43269;43270 65003;65004;65005;65006;65007;65008;65009;65010 65004 7 TNLEDVGRR GKYGALVICETSEQKTNLEDVGRRLGQHVV ETSEQKTNLEDVGRRLGQHVVGMAPLSVGS K T N R R L 0 2 1 1 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 9 1 1058.5469 B4DHY8;E5KS95;P43897 B4DHY8 207 215 TSFM Elongation factor Ts, mitochondrial yes no 2 0.0050258 76.679 3 0.24827 0.33944 NaN 1 Median 0.24827 0.33944 NaN 1 0 Median NaN NaN NaN 0 0 Median 13395000 12507000 887210 13395000 12507000 887210 0 0 0 12029 809 12348 43271;43272;43273 65011;65012;65013 65012 3 TNLLDELPQSVLK WEQNLKDPVAVQTAKTNLLDELPQSVLKWA AKTNLLDELPQSVLKWAPSGSSCCEIAQFL K T N L K W 0 0 1 1 0 1 1 0 0 0 4 1 0 0 1 1 1 0 0 1 0 0 13 0 1468.8137 A8K9L2;Q05CR6;Q86Y07 A8K9L2 265 277 VRK2 Serine/threonine-protein kinase VRK2 yes no 2 0.020178 75.78 1 0.36313 0.44604 NaN 1 Median 0.36313 0.44604 NaN 1 0 Median NaN NaN NaN 0 0 Median 1388000 1030400 357610 1388000 1030400 357610 0 0 0 12030 649 12349 43274 65014 65014 1 TNLLLQAHLSR PHKLNNPKFNDPHVKTNLLLQAHLSRMQLS PHVKTNLLLQAHLSRMQLSAELQSDTEEIL K T N S R M 1 1 1 0 0 1 0 0 1 0 4 0 0 0 0 1 1 0 0 0 0 0 11 0 1264.7252 O75643;A4FU77;B4E150;B4E0P5;Q9UNV9;A2RRQ7;Q7L5W4;Q9P172 O75643 1891 1901 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0054552 87.363 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18879000 18879000 0 18879000 18879000 0 0 0 0 12031 1206 12350 43275;43276 65015;65016 65016 2 TNLVWDEVSGQWR WQQFARLKGIRPKKKTNLVWDEVSGQWRRR KKTNLVWDEVSGQWRRRWGYQRARDDTKEW K T N W R R 0 1 1 1 0 1 1 1 0 0 1 0 0 0 0 1 1 2 0 2 0 0 13 0 1588.7634 Q15050 Q15050 129 141 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 0.0042839 46.592 1 0.56901 0.72316 NaN 1 Median NaN NaN NaN 0 0 Median 0.56901 0.72316 NaN 1 0 Median 4496300 3006200 1490100 0 0 0 4496300 3006200 1490100 12032 1503 12351 43277 65017 65017 1 TNNFNVETLK GSEQTVVAFFIMPARTNNFNVETLKGQAVR IMPARTNNFNVETLKGQAVRKQLWDTANTV R T N L K G 0 0 3 0 0 0 1 0 0 0 1 1 0 1 0 0 2 0 0 1 0 0 10 0 1178.5932 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6;B7Z255;A0A024RAU5;P54840 P13807 372 381 GYS1;GYS2 Glycogen [starch] synthase, muscle;Glycogen [starch] synthase, liver yes no 2 6.1892E-05 114.86 3 1 0.6505 0.81646 7.163 2 Median 0.6505 0.81646 7.163 2 0 Median NaN NaN NaN 0 0 Median 102750000 48820000 53926000 102750000 48820000 53926000 0 0 0 12033 1265 12352 43278;43279;43280;43281 65018;65019;65020;65021;65022 65020 5 TNNFSAFLANVR PHLEGLAEFQENVRKTNNFSAFLANVRKAF VRKTNNFSAFLANVRKAFTATVYN______ K T N V R K 2 1 3 0 0 0 0 0 0 0 1 0 0 2 0 1 1 0 0 1 0 0 12 0 1352.6837 Q9HBM1 Q9HBM1 204 215 SPC25 Kinetochore protein Spc25 yes yes 2 5.5172E-05 84.17 2 2 0.38631 0.53597 16.423 2 Median 0.43261 0.60197 NaN 1 0 Median 0.34496 0.47721 NaN 1 0 Median 25382000 20102000 5279700 10571000 8151400 2419500 14811000 11951000 2860200 12034 1749 12353 43282;43283;43284;43285 65023;65024;65025;65026;65027 65023 5 TNPEYIYAPLK INYTYMLTRCIQACKTNPEYIYAPLKEIPP QACKTNPEYIYAPLKEIPPADIPKNKKLLT K T N L K E 1 0 1 0 0 0 1 0 0 1 1 1 0 0 2 0 1 0 2 0 0 0 11 0 1307.6762 Q6NUN2;A3F769;A3F768;O15226;A2I829;A2I831 Q6NUN2 212 222 NKRF;NRF NF-kappa-B-repressing factor yes no 2 0.01539 76.465 2 0.49959 0.64049 6.6493 2 Median 0.49959 0.64049 6.6493 2 0 Median NaN NaN NaN 0 0 Median 12445000 8167900 4277400 12445000 8167900 4277400 0 0 0 12035 541 12354 43286;43287 65028;65029 65029 2 TNQEHAALEAENSKGEVETLK KGRVENLERELEIARTNQEHAALEAENSKG ALEAENSKGEVETLKAKIEGMTQSLRGLEL R T N L K A 3 0 2 0 0 1 5 1 1 0 2 2 0 0 0 1 2 0 0 1 0 0 21 1 2297.1135 P49454 P49454 2446 2466 CENPF Centromere protein F yes yes 3 0.00035014 61.304 4 0.6816 0.84058 22.628 4 Median 0.6816 0.84058 22.628 4 0 Median NaN NaN NaN 0 0 Median 24359000 14806000 9552700 24359000 14806000 9552700 0 0 0 12036 1351 12355 43288;43289;43290;43291 65030;65031;65032;65033 65030 4 TNQELQEINR LGTDEDSLIEIICSRTNQELQEINRVYKEM IICSRTNQELQEINRVYKEMYKTDLEKDII R T N N R V 0 1 2 0 0 2 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 10 0 1243.6157 H0YKS4;H0YMD0;H0YMU9;H0YN42;V9HW65;A0A024R5Z7;P07355;H0YMM1;B4DNH8;A6NMY6;H0YM50;H0YNP5;H0YN52;H0YNA0;H0YN28;H0YL33;B3KRQ1;H0YLE2 H0YKS4 136 145 ANXA2;HEL-S-270;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 2 1.1259E-14 166.16 3 0.35325 0.49167 5.0843 2 Median 0.35325 0.49167 5.0843 2 0 Median NaN NaN NaN 0 0 Median 13693000 10615000 3078300 13693000 10615000 3078300 0 0 0 12037 153 12356 43292;43293;43294 65034;65035;65036;65037;65038;65039 65039 6 TNQYGILFK ______________________________ ______________________________ M T N F K Q 0 0 1 0 0 1 0 1 0 1 1 1 0 1 0 0 1 0 1 0 0 0 9 0 1082.576 Q9GZS3;H0YL19;H0YN81;H0YMF9;H0YM76;B4E387 Q9GZS3 2 10 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes no 1 0.0056837 98.033 2 0.56403 0.72738 14.02 2 Median 0.56403 0.72738 14.02 2 0 Median NaN NaN NaN 0 0 Median 3543600 2305400 1238200 3543600 2305400 1238200 0 0 0 12038 1729 12357 43295;43296 65040;65041;65042 65040 3 TNREGLEYIPLR YYKPWFFKHVENYLKTNREGLEYIPLRHYY YLKTNREGLEYIPLRHYYHRHTRSIFWELQ K T N L R H 0 2 1 0 0 0 2 1 0 1 2 0 0 0 1 0 1 0 1 0 0 0 12 1 1459.7783 Q3LIE7;B7ZAV4;Q15392 Q3LIE7 225 236 Nbla03646;DHCR24 Delta(24)-sterol reductase yes no 3 0.048915 33.589 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3919600 3919600 0 3919600 3919600 0 0 0 0 12039 922 12358 43297 65043 65043 1 TNRHPLECLPGLIQDK VRKEFPITEAVGSDKTNRHPLECLPGLIQD NRHPLECLPGLIQDKEWNEKELQKLHCAFA K T N D K E 0 1 1 1 1 1 1 1 1 1 3 1 0 0 2 0 1 0 0 0 0 0 16 1 1889.9782 Q6P0N0;H0YJM1 Q6P0N0 863 878 MIS18BP1 Mis18-binding protein 1 yes no 3 4.859E-09 122.16 3 0.72035 0.96873 31.892 3 Median 0.72035 0.96873 31.892 3 0 Median NaN NaN NaN 0 0 Median 31363000 18030000 13333000 31363000 18030000 13333000 0 0 0 12040 1588 12359 43298;43299;43300 65044;65045;65046;65047;65048 65044 5 TNRPFISQK MMNAIKESYDYNPNKTNRPFISQKIHFPDF DYNPNKTNRPFISQKIHFPDFSTRDIHRNY K T N Q K I 0 1 1 0 0 1 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 9 1 1089.5931 O75530;B4DVW7 O75530 285 293 EED Polycomb protein EED yes no 2;3 0.0064303 96.668 3 1 0.71085 0.94668 23.564 3 Median 0.65778 0.86983 11.972 2 0 Median 0.81282 1.2731 NaN 1 0 Median 57797000 42293000 15503000 45425000 35280000 10146000 12371000 7013700 5357700 12041 1203 12360 43301;43302;43303;43304 65049;65050;65051;65052 65050 4 TNRPPLSLSR STFNQVVLKRLFMSRTNRPPLSLSRMIRKM LFMSRTNRPPLSLSRMIRKMKLPGRENKTA R T N S R M 0 2 1 0 0 0 0 0 0 0 2 0 0 0 2 2 1 0 0 0 0 0 10 1 1139.6411 Q0QEW2;G3V203;H0YHA7;A0A024QZD1;J3QQ67;Q07020;F8VUA6;F8VYV2;B4DDY5;A0A075B7A0 Q0QEW2 33 42 RPL18 60S ribosomal protein L18 yes no 2;3 4.416E-07 129.88 8 2 0.73462 1.03 5.5675 10 Median 0.74135 1.0252 5.22 8 0 Median 0.65378 1.0801 4.5071 2 0 Median 4590100000 2619600000 1970500000 4284100000 2443200000 1840900000 306020000 176400000 129620000 12042 9 12361 43305;43306;43307;43308;43309;43310;43311;43312;43313;43314 65053;65054;65055;65056;65057;65058;65059;65060;65061;65062;65063;65064;65065;65066;65067;65068;65069;65070 65062 18 TNSTFNQVVLK YLRLLVKLYRFLARRTNSTFNQVVLKRLFM LARRTNSTFNQVVLKRLFMSRTNRPPLSLS R T N L K R 0 0 2 0 0 1 0 0 0 0 1 1 0 1 0 1 2 0 0 2 0 0 11 0 1249.6667 Q0QEW2;G3V203;H0YHA7;A0A024QZD1;J3QQ67;Q07020;F8VYV2;B4DDY5;A0A075B7A0 Q0QEW2 16 26 RPL18 60S ribosomal protein L18 yes no 2 1.3627E-10 172.25 4 2 0.75162 1.0136 5.1977 6 Median 0.76521 1.0065 1.7891 4 0 Median 0.69731 1.1029 0.6043 2 0 Median 1270700000 712650000 558050000 1027100000 570680000 456420000 243610000 141980000 101640000 12043 9 12362 43315;43316;43317;43318;43319;43320 65071;65072;65073;65074;65075;65076;65077;65078;65079;65080;65081;65082;65083;65084;65085;65086;65087;65088;65089 65077 19 TNSTFNQVVLKR YLRLLVKLYRFLARRTNSTFNQVVLKRLFM ARRTNSTFNQVVLKRLFMSRTNRPPLSLSR R T N K R L 0 1 2 0 0 1 0 0 0 0 1 1 0 1 0 1 2 0 0 2 0 0 12 1 1405.7678 Q0QEW2;G3V203;H0YHA7;A0A024QZD1;J3QQ67;Q07020;F8VYV2;B4DDY5;A0A075B7A0 Q0QEW2 16 27 RPL18 60S ribosomal protein L18 yes no 2;3 1.5476E-28 134.68 4 1 0.70316 0.93511 16.567 3 Median 0.63618 0.85278 13.034 2 0 Median 0.71757 1.0824 NaN 1 0 Median 33134000 18727000 14407000 24654000 13690000 10964000 8479700 5036500 3443200 12044 9 12363 43321;43322;43323;43324;43325 65090;65091;65092;65093;65094;65095 65094 6 TNVLGHLQQGGAPTPFDR YNLYSSEGKGVFDCRTNVLGHLQQGGAPTP LGHLQQGGAPTPFDRNYGTKLGVKAMLWLS R T N D R N 1 1 1 1 0 2 0 3 1 0 2 0 0 1 2 0 2 0 0 1 0 0 18 0 1906.965 P17858;Q7L2M7;B3KNQ7;Q9BSP4 P17858 655 672 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 3 4.4988E-09 102.84 4 0.46976 0.63109 11.963 4 Median 0.46976 0.63109 11.963 4 0 Median NaN NaN NaN 0 0 Median 83376000 55791000 27585000 83376000 55791000 27585000 0 0 0 12045 1279 12364 43326;43327;43328;43329 65096;65097;65098;65099;65100;65101 65100 6 TNVLYELAQYASEPSEQELLRK RTALTYYLDITNPPRTNVLYELAQYASEPS AQYASEPSEQELLRKMASSSGEGKELYLSW R T N R K M 2 1 1 0 0 2 4 0 0 0 4 1 0 0 1 2 1 0 2 1 0 0 22 1 2580.3071 B2R6E5;A8K3B4;Q59ED7;H0Y4R2;P16435;Q63HL4;B4DJI8;B4E305;B4DKM8;E7EMD0;B4DDH3 B2R6E5 386 407 POR;DKFZp686G04235 NADPH--cytochrome P450 reductase yes no 3 5.0508E-12 78.554 3 0.4562 0.61207 8.9557 3 Median 0.4562 0.61207 8.9557 3 0 Median NaN NaN NaN 0 0 Median 18875000 12920000 5954600 18875000 12920000 5954600 0 0 0 12046 592 12365 43330;43331;43332 65102;65103;65104 65103 3 TNVVTMPTAHPR EDVIPATQCLTPGIRTNVVTMPTAHPRIAP GIRTNVVTMPTAHPRIAPKASMAGASSSKE R T N P R I 1 1 1 0 0 0 0 0 1 0 0 0 1 0 2 0 3 0 0 2 0 0 12 0 1322.6765 E7ETY2;B4DRA2;J3KQ96;Q13428;Q59FZ2 E7ETY2 1056 1067 TCOF1 Treacle protein no no 2 0.0010693 58.172 2 0.97749 1.4234 4.1529 2 Median NaN NaN NaN 0 0 Median 0.97749 1.4234 4.1529 2 0 Median 27747000 13976000 13771000 0 0 0 27747000 13976000 13771000 12047 1016;1135;1469 12366 43333;43334 65105;65106 65106 366 2 TNYDIVVR KKKKELKQSRQLSDKTNYDIVVRAKQMWEI SRQLSDKTNYDIVVRAKQMWEILRRKDCDK K T N V R A 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 2 0 0 8 0 978.51345 Q15397 Q15397 130 137 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 2 0.015955 63.565 1 2 0.47746 0.67337 80.844 2 Median 0.90042 1.1927 NaN 1 0 Median 0.25318 0.38018 NaN 1 0 Median 24786000 17021000 7765200 12176000 6007300 6168800 12610000 11014000 1596400 12048 1511 12367 43335;43336;43337 65107;65108;65109 65107 3 TNYNDRYDEIR SEDKGALAKLVEAIRTNYNDRYDEIRRHWG EAIRTNYNDRYDEIRRHWGGNVLGPKSVAR R T N I R R 0 2 2 2 0 0 1 0 0 1 0 0 0 0 0 0 1 0 2 0 0 0 11 1 1457.6535 P62424;Q9BY74;Q5T8U2 P62424 224 234 RPL7A;RP-L7a 60S ribosomal protein L7a yes no 2;3 2.0545E-21 148.91 8 2 0.68949 0.93371 12.387 9 Median 0.6905 0.94171 9.0106 7 0 Median 0.53902 0.77299 8.1172 2 0 Median 863190000 500590000 362600000 845030000 488910000 356120000 18163000 11679000 6483200 12049 1411 12368 43338;43339;43340;43341;43342;43343;43344;43345;43346;43347 65110;65111;65112;65113;65114;65115;65116;65117;65118;65119;65120;65121;65122;65123;65124;65125;65126 65112 17 TNYNDRYDEIRR SEDKGALAKLVEAIRTNYNDRYDEIRRHWG AIRTNYNDRYDEIRRHWGGNVLGPKSVARI R T N R R H 0 3 2 2 0 0 1 0 0 1 0 0 0 0 0 0 1 0 2 0 0 0 12 2 1613.7546 P62424;Q9BY74;Q5T8U2 P62424 224 235 RPL7A;RP-L7a 60S ribosomal protein L7a yes no 2;3;4 1.2433E-45 166.45 8 0.66268 0.83157 9.451 8 Median 0.66268 0.83157 9.451 8 0 Median NaN NaN NaN 0 0 Median 1245100000 730100000 515040000 1245100000 730100000 515040000 0 0 0 12050 1411 12369 43348;43349;43350;43351;43352;43353;43354;43355 65127;65128;65129;65130;65131;65132;65133;65134;65135;65136;65137;65138 65132 12 TPAEVVSTCDITFACVSDPK EKCDLFIQEGARLGRTPAEVVSTCDITFAC VSTCDITFACVSDPKAAKDLVLGPSGVLQG R T P P K A 2 0 0 2 2 0 1 0 0 1 0 1 0 1 2 2 3 0 0 3 0 0 20 0 2196.0079 K7EMM8;D3DUE6;K7EK70;Q49A26;D3DUE7 Q49A26 287 306 GLYR1;N-PAC Putative oxidoreductase GLYR1 no no 2 2.4585E-72 221.85 4 1 0.89953 1.1234 14.196 5 Median 0.90616 1.1264 4.1208 4 0 Median 0.54301 0.82585 NaN 1 0 Median 90020000 48135000 41885000 78353000 41039000 37315000 11666000 7096100 4570100 12051 982;1533 12370 43356;43357;43358;43359;43360 65139;65140;65141;65142;65143;65144;65145;65146;65147;65148 65141 10 TPAFAESVTEGDVR FRTTAVCKDDLVTVKTPAFAESVTEGDVRW KTPAFAESVTEGDVRWEKAVGDTVAEDEVV K T P V R W 2 1 0 1 0 0 2 1 0 0 0 0 0 1 1 1 2 0 0 2 0 0 14 0 1477.7049 Q6IBS5;A0A024R6C9;P36957;H0YJF9;G3V5M3;G3V3F0;B7Z6J1;Q86SW4 Q6IBS5 75 88 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes no 2 0.0084473 98.182 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 806150 806150 0 806150 806150 0 0 0 0 12052 158 12371 43361 65149 65149 1 TPAFSPFVR LKYISSCKRLRSDSRTPAFSPFVRVEKRDA LRSDSRTPAFSPFVRVEKRDAFTTICTVVN R T P V R V 1 1 0 0 0 0 0 0 0 0 0 0 0 2 2 1 1 0 0 1 0 0 9 0 1020.5393 Q7Z5J4 Q7Z5J4 1592 1600 RAI1 Retinoic acid-induced protein 1 yes yes 2 0.013614 57.96 1 2 0.70797 0.94675 NaN 1 Median NaN NaN NaN 0 0 Median 0.70797 0.94675 NaN 1 0 Median 9163200 4457300 4705900 1620800 1620800 0 7542400 2836500 4705900 12053 1617 12372 43362;43363;43364 65150;65151;65152 65151 3 TPAILYTYSGLR PPPVRQEPSPKPNNKTPAILYTYSGLRNRR NNKTPAILYTYSGLRNRRAAVYVGSFSWWT K T P L R N 1 1 0 0 0 0 0 1 0 1 2 0 0 0 1 1 2 0 2 0 0 0 12 0 1353.7293 J3QT54;F5H6M0;F5H047;F5H669;B4DGF8;Q8N684;F5H5B7;F5H1W4;F5H2K8;F5H6P5;F5H6A8;F5GXA3;C9JM38;C9J286;C9J323 J3QT54 67 78 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes no 2 0.0083616 54.608 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1826700 1826700 0 1826700 1826700 0 0 0 0 12054 804 12373 43365 65153 65153 1 TPALISDYK YKEQVLEPMLNGTDKTPALISDYKEYHTDT LNGTDKTPALISDYKEYHTDTTVNSVVKMT K T P Y K E 1 0 0 1 0 0 0 0 0 1 1 1 0 0 1 1 1 0 1 0 0 0 9 0 1006.5335 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80;Q6W6M6 Q71UH4 943 951 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.003933 116.37 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24679000 24679000 0 24679000 24679000 0 0 0 0 12055 1437 12374 43366;43367 65154;65155 65155 2 TPASPVVHIR AGGGGGGENYDDPHKTPASPVVHIRGLIDG DDPHKTPASPVVHIRGLIDGVVEADLVEAL K T P I R G 1 1 0 0 0 0 0 0 1 1 0 0 0 0 2 1 1 0 0 2 0 0 10 0 1075.6138 B2R959;Q6NTA2;P14866;M0QXS5;M0R1W6;M0QYL7 B2R959 67 76 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 2;3 6.9374E-05 78.655 2 0.49697 0.68955 NaN 1 Median 0.49697 0.68955 NaN 1 0 Median NaN NaN NaN 0 0 Median 62819000 42988000 19831000 62819000 42988000 19831000 0 0 0 12056 719 12375 43368;43369 65156;65157;65158 65156 3 TPATAPVPAR SPSVPKRPKLPAPTRTPATAPVPARAQGAV PAPTRTPATAPVPARAQGAVTGKPRGEGTE R T P A R A 3 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 2 0 0 1 0 0 10 0 979.54508 A0A024R0S8;Q59HH7;P18887;F5H8D7;B4DEB2 A0A024R0S8 281 290 XRCC1 DNA repair protein XRCC1 yes no 2 4.2015E-06 117.04 3 1 0.68954 0.90755 1.4256 3 Plateau 0.68954 0.90755 1.4256 3 0 Plateau NaN NaN NaN 0 0 Median 22831000 14010000 8821300 20611000 11789000 8821300 2220400 2220400 0 12057 42 12376 43370;43371;43372;43373 65159;65160;65161;65162 65161 4 TPCEEILVK KAGNNMLLVGVHGPRTPCEEILVKHVGSRL GVHGPRTPCEEILVKHVGSRLYSVSYLLKD R T P V K H 0 0 0 0 1 0 2 0 0 1 1 1 0 0 1 0 1 0 0 1 0 0 9 0 1087.5583 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;Q86TQ3 P21333 2599 2607 FLNA;FLJ00119 Filamin-A yes no 2 0.0067491 90.601 1 0.93289 1.2078 NaN 1 Median 0.93289 1.2078 NaN 1 0 Median NaN NaN NaN 0 0 Median 7186000 2664300 4521700 7186000 2664300 4521700 0 0 0 12058 1287 12377 43374 65163 65163 1 TPCNAGTFSQPEK VTGSWDQTVKLWDPRTPCNAGTFSQPEKVY PRTPCNAGTFSQPEKVYTLSVSGDRLIVGT R T P E K V 1 0 1 0 1 1 1 1 0 0 0 1 0 1 2 1 2 0 0 0 0 0 13 0 1435.6402 J3QT28;A0A140VJF3;O43684;B4DDM6;J3QSX4 J3QT28 127 139 BUB3 Mitotic checkpoint protein BUB3 yes no 2 1.4611E-52 241.39 4 2 0.53751 0.66013 16.236 6 Median 0.50331 0.62863 4.8932 4 0 Median 0.59233 0.87142 4.7679 2 0 Median 76717000 51700000 25018000 62691000 43240000 19451000 14027000 8460000 5566600 12059 494 12378 43375;43376;43377;43378;43379;43380 65164;65165;65166;65167;65168;65169;65170;65171;65172;65173;65174 65166 11 TPEFLR VLSAPPHFHFGQTNRTPEFLRKFPAGKVPA HFHFGQTNRTPEFLRKFPAGKVPAFEGDDG R T P L R K 0 1 0 0 0 0 1 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 6 0 761.40719 Q53YD7;P26641;B4DUK7;B4DSR4 Q53YD7 46 51 EEF1G Elongation factor 1-gamma yes no 2 0.025336 121.87 1 1 0.51491 0.70666 120.85 2 Median 0.22209 0.30066 NaN 1 0 Median 1.1938 1.6609 NaN 1 0 Median 16625000 10568000 6056800 7563000 5983200 1579900 9061500 4584600 4476900 12060 1299 12379 43381;43382 65175;65176 65175 2 TPEITVSIIK SKALDRVLDPTCTIKTPEITVSIIKELNRR TCTIKTPEITVSIIKELNRRGVLANALAGR K T P I K E 0 0 0 0 0 0 1 0 0 3 0 1 0 0 1 1 2 0 0 1 0 0 10 0 1099.6489 Q8TED0;H0Y8P4 Q8TED0 389 398 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 8.5056E-06 112.11 4 2 0.97511 1.2205 11.793 6 Median 1.0235 1.2868 5.8183 4 0 Median 0.6596 1.047 6.8724 2 0 Median 240090000 131510000 108580000 98612000 46848000 51764000 141470000 84659000 56814000 12061 1660 12380 43383;43384;43385;43386;43387;43388 65177;65178;65179;65180;65181;65182;65183;65184;65185;65186;65187 65181 11 TPEIYLAYR RRALPEFFNGKNKSKTPEIYLAYRNFMIDT GKNKSKTPEIYLAYRNFMIDTYRLNPQEYL K T P Y R N 1 1 0 0 0 0 1 0 0 1 1 0 0 0 1 0 1 0 2 0 0 0 9 0 1124.5866 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;B4DF22 Q58EY4 483 491 SMARCC1;SMARCC2 SWI/SNF complex subunit SMARCC1;SWI/SNF complex subunit SMARCC2 no no 2 6.6941E-05 121.62 3 1 0.62248 0.83437 45.477 3 Median 0.60001 0.8098 4.2259 2 0 Median 1.1514 1.7772 NaN 1 0 Median 61000000 34361000 26639000 41390000 26820000 14571000 19610000 7541500 12068000 12062 1549;257 12381 43389;43390;43391;43392 65188;65189;65190;65191;65192 65190 5 TPELPEPSVK TKSRSPSPAPEKKEKTPELPEPSVKVKEPS EKKEKTPELPEPSVKVKEPSVQEATSTSDI K T P V K V 0 0 0 0 0 0 2 0 0 0 1 1 0 0 3 1 1 0 0 1 0 0 10 0 1095.5812 A0A0S2Z4W1;A9Z1X7;B7Z7U0;A0A0S2Z4Z6;Q8IYB3;M0R088;E9PCT1;B4DED5 A0A0S2Z4W1 220 229 SRRM1 Serine/arginine repetitive matrix protein 1 yes no 2 0.021355 44.203 1 0.46663 0.63553 NaN 1 Median NaN NaN NaN 0 0 Median 0.46663 0.63553 NaN 1 0 Median 3450100 1909000 1541100 0 0 0 3450100 1909000 1541100 12063 471 12382 43393 65193 65193 1 TPELTWER NMGHSNTEIDVTSLRTPELTWERVRSQVDH IDVTSLRTPELTWERVRSQVDHVIWPDGKR R T P E R V 0 1 0 0 0 0 2 0 0 0 1 0 0 0 1 0 2 1 0 0 0 0 8 0 1030.5084 Q2NKW8;A0A024R0A8;V5YQL4;O43865;Q6ZMM9;H0Y8B3;Q6ZNS6;Q96HN2;Q6ZMI1;Q9BTL0;O43210 Q2NKW8 386 393 AHCYL1;FGFR2-AHCYL1;AHCYL2 Adenosylhomocysteinase;Putative adenosylhomocysteinase 2;Putative adenosylhomocysteinase 3 yes no 2 0.026654 53.968 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2131300 0 2131300 0 0 0 2131300 0 2131300 12064 30 12383 43394 65194 65194 1 TPEPVVPTAPEPHPTTSTDQPVTPK TSRATRCRTNRSSVKTPEPVVPTAPEPHPT EPHPTTSTDQPVTPKLTSRATRRKTNRSSV K T P P K L 1 0 0 1 0 1 2 0 1 0 0 1 0 0 8 1 6 0 0 3 0 0 25 0 2622.3177 Q14676;B4DYH4 Q14676 1608 1632 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 3 1.2828E-40 156.29 4 1 0.71423 0.90423 26.091 4 Median 0.76053 0.96183 14.97 3 0 Median 0.40816 0.61696 NaN 1 0 Median 37642000 21515000 16127000 22415000 10758000 11657000 15227000 10757000 4470500 12065 1491 12384 43395;43396;43397;43398;43399 65195;65196;65197;65198;65199;65200;65201;65202;65203 65196 9 TPEQCPSVVSLLSESYNPHVR VRRAAVESLGFILFRTPEQCPSVVSLLSES SVVSLLSESYNPHVRYGAAMALGICCAGTG R T P V R Y 0 1 1 0 1 1 2 0 1 0 2 0 0 0 3 4 1 0 1 3 0 0 21 0 2398.1587 H7C378;Q05BX4;Q05CW6;B2R6D0;A0A087WW66;Q99460 H7C378 122 142 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 3 0.00017155 68.401 2 0.5325 0.68429 NaN 1 Median 0.5325 0.68429 NaN 1 0 Median NaN NaN NaN 0 0 Median 4393800 3967100 426770 4393800 3967100 426770 0 0 0 12066 354 12385 43400;43401 65204;65205;65206 65204 3 TPEQVAEEEYLLQELR HERRRKEQLERLYNRTPEQVAEEEYLLQEL PEQVAEEEYLLQELRKIEARKKEREKRSQD R T P L R K 1 1 0 0 0 2 5 0 0 0 3 0 0 0 1 0 1 0 1 1 0 0 16 0 1945.9633 B4DQG8;Q9NPF5;Q5TG40;Q5TG39 B4DQG8 227 242 DMAP1 DNA methyltransferase 1-associated protein 1 yes no 2 0.0027498 80.371 2 1 0.56986 0.83153 9.6042 3 Median 0.59246 0.8374 13.57 2 0 Median 0.56986 0.83153 NaN 1 0 Median 14118000 9450600 4667500 7743800 5306000 2437800 6374300 4144600 2229700 12067 850 12386 43402;43403;43404 65207;65208;65209 65207 3 TPESIVPIAPELQPSTSR TSRATRGRTNRSSVKTPESIVPIAPELQPS SIVPIAPELQPSTSRNQLVTPEPTSRATRC K T P S R N 1 1 0 0 0 1 2 0 0 2 1 0 0 0 4 3 2 0 0 1 0 0 18 0 1921.0157 Q14676 Q14676 1567 1584 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 0.0013352 66.708 2 2 0.55858 0.80935 21.066 4 Median 0.65767 0.92252 4.6093 2 0 Median 0.45375 0.66213 14.497 2 0 Median 36128000 21750000 14378000 8236200 5006200 3230000 27891000 16744000 11148000 12068 1491 12387 43405;43406;43407;43408 65210;65211;65212;65213 65211 4 TPETLVPTAPK TSRATRGRKNRSSGKTPETLVPTAPKLEPS SSGKTPETLVPTAPKLEPSTSTDQPVTPEP K T P P K L 1 0 0 0 0 0 1 0 0 0 1 1 0 0 3 0 3 0 0 1 0 0 11 0 1152.639 Q14676;B4DYH4 Q14676 1403 1413 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 2 0.0024842 77.14 2 0.57526 0.82222 NaN 1 Median NaN NaN NaN 0 0 Median 0.57526 0.82222 NaN 1 0 Median 8726700 3796900 4929900 0 0 0 8726700 3796900 4929900 12069 1491 12388 43409;43410 65214;65215;65216 65216 3 TPETVVPTALELQPSTSTDRPVTSEPTSQATR TSQVTRGRKSRSSVKTPETVVPTALELQPS TDRPVTSEPTSQATRGRKNRSSVKTPEPVV K T P T R G 2 2 0 1 0 2 3 0 0 0 2 0 0 0 5 4 8 0 0 3 0 0 32 1 3395.7056 Q14676;B4DYH4;H0Y6Z8 Q14676 1198 1229 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 3 9.3955E-09 79.558 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11167000 10124000 1042900 11167000 10124000 1042900 0 0 0 12070 1491 12389 43411;43412;43413 65217;65218;65219 65219 3 TPETVVPTAPELQISTSTDQPVTPKPTSR TSRTTRSRTNMSSVKTPETVVPTAPELQIS STSTDQPVTPKPTSRTTRSRTNMSSVKNPE K T P S R T 1 1 0 1 0 2 2 0 0 1 1 1 0 0 6 3 7 0 0 3 0 0 29 1 3076.5928 Q14676 Q14676 1321 1349 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 3.4595E-06 80.813 2 2 0.48002 0.7471 32.56 3 Median 1.0033 1.2908 NaN 1 0 Median 0.46758 0.73493 2.3228 2 0 Median 32634000 19837000 12797000 8330600 4733700 3596900 24303000 15103000 9199600 12071 1491 12390 43414;43415;43416;43417 65220;65221;65222;65223;65224;65225 65221 6 TPFLLSGTSYK AKPNIRNVVVVDGVRTPFLLSGTSYKDLMP DGVRTPFLLSGTSYKDLMPHDLARAALTGL R T P Y K D 0 0 0 0 0 0 0 1 0 0 2 1 0 1 1 2 2 0 1 0 0 0 11 0 1212.639 P55084;D6W539;B5MD38;C9JEY0;C9JE81;C9K0M0 P55084 62 72 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 0.005617 54.584 1 0.65857 1.0015 NaN 1 Median NaN NaN NaN 0 0 Median 0.65857 1.0015 NaN 1 0 Median 11528000 6559500 4968700 0 0 0 11528000 6559500 4968700 12072 1378 12391 43418 65226 65226 1 TPFLLVGTQIDLRDDPSTIEK VKEKWVPEITHHCPKTPFLLVGTQIDLRDD GTQIDLRDDPSTIEKLAKNKQKPITPETAE K T P E K L 0 1 0 3 0 1 1 1 0 2 3 1 0 1 2 1 3 0 0 1 0 0 21 1 2357.2478 A0A024RAE4;B7ZAY4;B4DMH5;B4E1U9;P60953;Q5JYX0;Q9UJM1;A0A024RAE6;A0A024R9T1 A0A024RAE4 108 128 CDC42;hCG_39634 Cell division control protein 42 homolog yes no 3 4.2159E-05 55.763 2 0.84915 1.1137 34.862 2 Median 0.84915 1.1137 34.862 2 0 Median NaN NaN NaN 0 0 Median 9498200 5277800 4220400 9498200 5277800 4220400 0 0 0 12073 241 12392 43419;43420 65227;65228;65229;65230;65231;65232 65232 6 TPFNTDLGENSGIGK KLVETDFSTPTPRRKTPFNTDLGENSGIGK TPFNTDLGENSGIGKLFTNAVESLDEEEKD K T P G K L 0 0 2 1 0 0 1 3 0 1 1 1 0 1 1 1 2 0 0 0 0 0 15 0 1548.742 Q6P0N0 Q6P0N0 1094 1108 MIS18BP1 Mis18-binding protein 1 yes yes 2 1.4523E-13 153.81 4 2 0.59355 0.87799 1.8583 3 Median 0.7043 0.89279 NaN 1 0 Median 0.57962 0.86908 1.4418 2 0 Median 33866000 18749000 15117000 12866000 5541700 7323800 21001000 13207000 7793600 12074 1588 12393 43421;43422;43423;43424;43425;43426 65233;65234;65235;65236;65237;65238;65239;65240;65241 65234 9 TPGAATASASGAAEDGACGCLPNPGTFEECHR GSLGAGTSTSRSSERTPGAATASASGAAED CGCLPNPGTFEECHRKCKELFPIQMEGVKL R T P H R K 7 1 1 1 3 0 3 5 1 0 1 0 0 1 3 2 3 0 0 0 0 0 32 0 3218.3452 O96008;K7EJ57 O96008 57 88 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes no 3 1.1503E-35 138.8 4 0.57115 0.77292 4.8059 4 Median 0.57115 0.77292 4.8059 4 0 Median NaN NaN NaN 0 0 Median 20495000 10866000 9629600 20495000 10866000 9629600 0 0 0 12075 1226 12394 43427;43428;43429;43430 65242;65243;65244;65245;65246;65247;65248;65249;65250;65251 65244 10 TPGAATASASGAAEDGACGCLPNPGTFEECHRK GSLGAGTSTSRSSERTPGAATASASGAAED GCLPNPGTFEECHRKCKELFPIQMEGVKLT R T P R K C 7 1 1 1 3 0 3 5 1 0 1 1 0 1 3 2 3 0 0 0 0 0 33 1 3346.4401 O96008;K7EJ57 O96008 57 89 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes no 4 8.3008E-07 68.961 3 0.59497 0.75875 4.1012 3 Plateau 0.59497 0.75875 4.1012 3 0 Plateau NaN NaN NaN 0 0 Median 44476000 27036000 17439000 44476000 27036000 17439000 0 0 0 12076 1226 12395 43431;43432;43433 65252;65253;65254;65255 65252 4 TPGFSVQSISDFEK GDHRESKKSRSHSAKTPGFSVQSISDFEKF KTPGFSVQSISDFEKFTKGMDDLGSSEEEE K T P E K F 0 0 0 1 0 1 1 1 0 1 0 1 0 2 1 3 1 0 0 1 0 0 14 0 1540.7409 Q9NY61 Q9NY61 146 159 AATF Protein AATF yes yes 2 3.4448E-50 241.35 4 2 0.90227 1.1567 2.9946 5 Median 0.90723 1.1567 2.9232 3 0 Median 0.73953 1.1741 3.6194 2 0 Median 293490000 176150000 117350000 123920000 77352000 46566000 169570000 98795000 70779000 12077 1767 12396 43434;43435;43436;43437;43438;43439 65256;65257;65258;65259;65260;65261;65262;65263;65264;65265;65266;65267 65258 12 TPGPGAQSALR ALHIKLRATGGNRTKTPGPGAQSALRALAR NRTKTPGPGAQSALRALARSGMKIGRIEDV K T P L R A 2 1 0 0 0 1 0 2 0 0 1 0 0 0 2 1 1 0 0 0 0 0 11 0 1053.5567 P62263;E5RH77;H0YB22 P62263 107 117 RPS14 40S ribosomal protein S14 yes no 2 2.6469E-22 167.69 5 2 0.79216 1.0877 30.643 6 Median 0.81905 1.1306 3.8338 4 0 Median 0.37533 0.62089 5.3926 2 0 Median 1770500000 1100200000 670360000 1277300000 747480000 529860000 493170000 352680000 140500000 12078 1401 12397 43440;43441;43442;43443;43444;43445;43446 65268;65269;65270;65271;65272;65273;65274;65275;65276;65277 65274 10 TPGPPGLTTTPAPPDK PRMCTRSLTALSEPRTPGPPGLTTTPAPPD PGPPGLTTTPAPPDKLGGKQRAAFKSGKRV R T P D K L 1 0 0 1 0 0 0 2 0 0 1 1 0 0 6 0 4 0 0 0 0 0 16 0 1545.8039 Q7Z5J4 Q7Z5J4 1068 1083 RAI1 Retinoic acid-induced protein 1 yes yes 2 1.437E-11 139.46 3 2 0.8154 1.1189 31.952 4 Median 0.64283 0.81178 20.934 2 0 Median 0.90845 1.3541 2.5505 2 0 Median 25584000 15671000 9913500 9567800 6902200 2665600 16017000 8768800 7247900 12079 1617 12398 43447;43448;43449;43450;43451 65278;65279;65280;65281;65282;65283;65284;65285;65286;65287 65282 10 TPIPLLLR SLQPKGYTLATTQVKTPIPLLLRGQLREYQ LATTQVKTPIPLLLRGQLREYQHIGLDWLV K T P L R G 0 1 0 0 0 0 0 0 0 1 3 0 0 0 2 0 1 0 0 0 0 0 8 0 921.60114 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2;G1UI29;A0A087X0E3 A0A0A0MS59 411 418 SRCAP Helicase SRCAP yes no 2 0.019112 76.847 2 1 0.48615 0.67168 6.3722 2 Median 0.48615 0.67168 6.3722 2 0 Median NaN NaN NaN 0 0 Median 8281000 6381900 1899100 6276000 4376900 1899100 2005000 2005000 0 12080 394 12399 43452;43453;43454 65288;65289;65290 65289 3 TPIVGQPSIPGGPVR ASVESSSGEAFHVGKTPIVGQPSIPGGPVR TPIVGQPSIPGGPVRLCPGRIRYFKI____ K T P V R L 0 1 0 0 0 1 0 3 0 2 0 0 0 0 4 1 1 0 0 2 0 0 15 0 1473.8304 CON__P12763 CON__P12763 334 348 yes yes 2 1.0774E-05 150.09 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17440000 17440000 0 17440000 17440000 0 0 0 0 + 12081 959 12400 43455;43456;43457 65291;65292;65293 65291 3 TPKEEAQSLEDLAGFK LDPAARVTGMKKWPRTPKEEAQSLEDLAGF PKEEAQSLEDLAGFKELFQTPGPSEESMTD R T P F K E 2 0 0 1 0 1 3 1 0 0 2 2 0 1 1 1 1 0 0 0 0 0 16 1 1761.8785 P46013 P46013 1091 1106 MKI67 Antigen KI-67 yes no 3 0.0035186 60.158 4 0.92547 1.147 15.348 4 Median 0.92547 1.147 15.348 4 0 Median NaN NaN NaN 0 0 Median 36782000 19869000 16912000 36782000 19869000 16912000 0 0 0 12082 1342 12401 43458;43459;43460;43461 65294;65295;65296;65297 65297 4 TPLENLVLQAK RLEKMVPFQVPEILRTPLENLVLQAKIHMP EILRTPLENLVLQAKIHMPEKTAVEFLSKA R T P A K I 1 0 1 0 0 1 1 0 0 0 3 1 0 0 1 0 1 0 0 1 0 0 11 0 1224.7078 H7BXY3;A0A024R2T6;Q7L2E3;Q6W6M7 H7BXY3 786 796 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.0029959 99.788 1 0.75937 0.99879 NaN 1 Median 0.75937 0.99879 NaN 1 0 Median NaN NaN NaN 0 0 Median 3114900 1719600 1395300 3114900 1719600 1395300 0 0 0 12083 93 12402 43462 65298 65298 1 TPLEPPPIVVVVMGPPK QDLKTKKHHIPVVDRTPLEPPPIVVVVMGP LEPPPIVVVVMGPPKVGKSTLIQCLIRNFT R T P P K V 0 0 0 0 0 0 1 1 0 1 1 1 1 0 6 0 1 0 0 4 0 0 17 0 1769.0161 Q14692 Q14692 76 92 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.0029922 53.528 1 0.57048 0.86041 NaN 1 Median NaN NaN NaN 0 0 Median 0.57048 0.86041 NaN 1 0 Median 16389000 10029000 6360700 0 0 0 16389000 10029000 6360700 12084 1495 12403 43463 65299 65299 675 0 TPLEQEIFNLLHK AIAPIEHVLSGWKARTPLEQEIFNLLHKNK ARTPLEQEIFNLLHKNKQPVTDPLLTPVEK R T P H K N 0 0 1 0 0 1 2 0 1 1 3 1 0 1 1 0 1 0 0 0 0 0 13 0 1580.8562 Q9BVJ6;B4E343;X6RJY0;Q08E77;A0A024RDV0;Q5TAP6 Q9BVJ6 182 194 UTP14A;UTP14C;hCG_1811699 U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C yes no 3 1.0054E-12 153.81 4 2 0.96519 1.2769 8.9433 6 Median 1.0176 1.263 9.7243 4 0 Median 0.83971 1.3391 9.8809 2 0 Median 231320000 112430000 118890000 146100000 65789000 80309000 85225000 46645000 38579000 12085 1719 12404 43464;43465;43466;43467;43468;43469 65300;65301;65302;65303;65304;65305;65306;65307;65308;65309;65310;65311;65312 65304 13 TPLGGSFLVYESFLYR HQDMDADPGGPEFLKTPLGGSFLVYESFLY PLGGSFLVYESFLYRREKAAGEKVYWTCRD K T P Y R R 0 1 0 0 0 0 1 2 0 0 3 0 0 2 1 2 1 0 2 1 0 0 16 0 1847.9458 Q4VC44;I3L188;J3KNW1;B3KRZ0;B3KPY2;B3KP60;I3L4V9 Q4VC44 424 439 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 2 0.049836 51.612 1 0.31727 0.44695 NaN 1 Median 0.31727 0.44695 NaN 1 0 Median NaN NaN NaN 0 0 Median 2279600 1753000 526620 2279600 1753000 526620 0 0 0 12086 1536 12405 43470 65313 65313 1 TPLHEIALSIK RFERLETHMTPEMFRTPLHEIALSIKLLRL EMFRTPLHEIALSIKLLRLGGIGQFLAKAI R T P I K L 1 0 0 0 0 0 1 0 1 2 2 1 0 0 1 1 1 0 0 0 0 0 11 0 1220.7129 Q08211;B3KU66 Q08211 796 806 DHX9 ATP-dependent RNA helicase A yes no 2;3 7.6105E-05 124.39 6 2 0.68751 0.87413 20.972 8 Median 0.7108 0.91428 19.33 6 0 Median 0.47601 0.73725 5.1475 2 0 Median 356550000 209130000 147410000 301220000 170540000 130680000 55322000 38591000 16732000 12087 1448 12406 43471;43472;43473;43474;43475;43476;43477;43478 65314;65315;65316;65317;65318;65319;65320;65321;65322;65323;65324;65325;65326;65327;65328;65329;65330;65331 65315 18 TPLLDDPVFIHPSSVLFK QSEEMLEDKWRNAYKTPLLDDPVFIHPSSV LDDPVFIHPSSVLFKELPEFVVYQEIVETT K T P F K E 0 0 0 2 0 0 0 0 1 1 3 1 0 2 3 2 1 0 0 2 0 0 18 0 2024.0983 Q8IY37;F5H3Y4 Q8IY37 957 974 DHX37 Probable ATP-dependent RNA helicase DHX37 yes no 3 4.0138E-07 104.26 4 1 1.2017 1.5177 37.17 5 Median 1.2213 1.5543 19.34 4 0 Median 0.46372 0.69443 NaN 1 0 Median 43455000 23229000 20225000 35748000 17598000 18150000 7706200 5631000 2075200 12088 1627 12407 43479;43480;43481;43482;43483 65332;65333;65334;65335;65336;65337;65338;65339;65340;65341 65332 10 TPLRPLDPTR GLPHISDVVLDKANKTPLRPLDPTRLQGIN DKANKTPLRPLDPTRLQGINCGPDFTPSFA K T P T R L 0 2 0 1 0 0 0 0 0 0 2 0 0 0 3 0 2 0 0 0 0 0 10 1 1164.6615 E7EX73;B4DSI9;E9PGM1;E7EUU4;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637;C9JF13;C9J6B6;C9K073;C9J2Z7 E7EX73 483 492 EIF4G1;EIF4G1 variant protein Eukaryotic translation initiation factor 4 gamma 1 yes no 3 0.0021808 89.679 2 0.2827 0.38337 14.877 2 Median 0.2827 0.38337 14.877 2 0 Median NaN NaN NaN 0 0 Median 24179000 18736000 5442900 24179000 18736000 5442900 0 0 0 12089 747 12408 43484;43485 65342;65343 65342 2 TPLRQDLEANEQDARPK SSRTADKENTLQCPKTPLRQDLEANEQDAR LRQDLEANEQDARPKQENHLHSLGRNKVGY K T P P K Q 2 2 1 2 0 2 2 0 0 0 2 1 0 0 2 0 1 0 0 0 0 0 17 2 1980.0025 A0A1B0GUH9;A0A1P0AZG4 A0A1B0GUH9 347 363 yes no 3 0.0095271 119.08 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12090 517 12409 43486 65344 65344 1 TPLSTGGTLAFVSPSLAVHK TVSAGKGSATSNWKKTPLSTGGTLAFVSPS GGTLAFVSPSLAVHKSSSAVDRQREYLLDM K T P H K S 2 0 0 0 0 0 0 2 1 0 3 1 0 1 2 3 3 0 0 2 0 0 20 0 1982.0837 A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7;B4E0Q6 A0A024R7K7 586 605 GATAD2A Transcriptional repressor p66-alpha yes no 3 0.00010707 80.459 4 2 1.0952 1.5524 20.174 6 Median 1.1279 1.414 19.989 4 0 Median 1.0952 1.7104 13.599 2 0 Median 102630000 47715000 54912000 47810000 22661000 25149000 54818000 25055000 29763000 12091 179 12410 43487;43488;43489;43490;43491;43492 65345;65346;65347;65348;65349;65350;65351 65345 7 TPPAPSPFDLPELK ILKEMCDVEQVLSKKTPPAPSPFDLPELKH KTPPAPSPFDLPELKHVATEYQENKAPGKK K T P L K H 1 0 0 1 0 0 1 0 0 0 2 1 0 1 5 1 1 0 0 0 0 0 14 0 1507.7922 Q59HG1;O95239;B3KNC0 Q59HG1 1184 1197 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 0.00012233 93.345 4 2 0.94212 1.1831 32.654 5 Median 0.96914 1.22 6.1101 3 0 Median 0.46064 0.68863 1.8998 2 0 Median 33934000 19875000 14058000 15582000 7506300 8076000 18351000 12369000 5982500 12092 1216 12411 43493;43494;43495;43496;43497;43498 65352;65353;65354;65355;65356;65357;65358 65355 7 TPPLITDYR YKEQVLEPMLNGTEKTPPLITDYREYHTDT LNGTEKTPPLITDYREYHTDTTVKFVVKMT K T P Y R E 0 1 0 1 0 0 0 0 0 1 1 0 0 0 2 0 2 0 1 0 0 0 9 0 1074.571 P11388 P11388 950 958 TOP2A DNA topoisomerase 2-alpha yes yes 2 3.0617E-05 145.16 4 2 0.78662 1.1782 7.3549 6 Median 0.81912 1.129 4.6004 4 0 Median 0.7746 1.2839 0.23991 2 0 Median 1662300000 913590000 748660000 1089400000 588740000 500690000 572830000 324850000 247980000 12093 1256 12412 43499;43500;43501;43502;43503;43504 65359;65360;65361;65362;65363;65364;65365;65366;65367;65368;65369;65370;65371;65372;65373;65374 65360 16 TPPLITDYREYHTDTTVK YKEQVLEPMLNGTEKTPPLITDYREYHTDT LITDYREYHTDTTVKFVVKMTEEKLAEAER K T P V K F 0 1 0 2 0 0 1 0 1 1 1 1 0 0 2 0 5 0 2 1 0 0 18 1 2149.0691 P11388 P11388 950 967 TOP2A DNA topoisomerase 2-alpha yes yes 3;4 5.9295E-09 72.819 6 4 0.82409 1.1848 6.615 10 Median 0.84799 1.1216 5.8715 6 0 Median 0.73198 1.2565 4.9291 4 0 Median 479650000 247730000 231920000 363300000 182480000 180820000 116350000 65247000 51102000 12094 1256 12413 43505;43506;43507;43508;43509;43510;43511;43512;43513;43514 65375;65376;65377;65378;65379;65380;65381;65382;65383;65384;65385;65386;65387;65388;65389 65384 15 TPQEAIMDGTEIAVSPR NASKTWELSLYELHRTPQEAIMDGTEIAVS QEAIMDGTEIAVSPRSLHSELMCPICLDML R T P P R S 2 1 0 1 0 1 2 1 0 2 0 0 1 0 2 1 2 0 0 1 0 0 17 0 1813.888 Q06587;B4DVB5 Q06587 24 40 RING1 E3 ubiquitin-protein ligase RING1 yes no 2 1.4586E-05 63.29 1 0.72111 1.004 NaN 1 Median NaN NaN NaN 0 0 Median 0.72111 1.004 NaN 1 0 Median 6193500 3338800 2854700 0 0 0 6193500 3338800 2854700 12095 1446 12414 43515 65390 65390 652 1 TPQEAITDGLEIVVSPR PLSKTWELSLYELQRTPQEAITDGLEIVVS QEAITDGLEIVVSPRSLHSELMCPICLDML R T P P R S 1 1 0 1 0 1 2 1 0 2 1 0 0 0 2 1 2 0 0 2 0 0 17 0 1823.9629 X6RFN3;Q99496 X6RFN3 27 43 RNF2 E3 ubiquitin-protein ligase RING2 yes no 2 8.5671E-06 105.19 3 2 0.78217 1.1307 6.0392 2 Median 0.88696 1.18 NaN 1 0 Median 0.68976 1.0834 NaN 1 0 Median 51827000 33356000 18472000 18942000 10615000 8326200 32886000 22740000 10146000 12096 1703 12415 43516;43517;43518;43519;43520 65391;65392;65393;65394;65395;65396 65392 6 TPQGAVPAYLLDR KMHEKRNTKQKNDEKTPQGAVPAYLLDREG EKTPQGAVPAYLLDREGQSRAKVLSNMIKQ K T P D R E 2 1 0 1 0 1 0 1 0 0 2 0 0 0 2 0 1 0 1 1 0 0 13 0 1399.746 Q5J7U2;O95478;A0A0A0MQZ6 Q5J7U2 81 93 CDK105;NSA2 Ribosome biogenesis protein NSA2 homolog yes no 2 1.5028E-12 124.42 4 2 0.72663 0.96367 6.607 5 Median 0.75313 1.0031 2.3749 3 0 Median 0.56308 0.88139 0.23199 2 0 Median 108960000 66629000 42329000 52415000 30676000 21739000 56543000 35953000 20591000 12097 1221 12416 43521;43522;43523;43524;43525;43526 65397;65398;65399;65400;65401;65402;65403;65404 65398 8 TPQQLWYTHEK LIQNAKKSDIPEKPKTPQQLWYTHEKKVYL EKPKTPQQLWYTHEKKVYLKVRPDEIMRDY K T P E K K 0 0 0 0 0 2 1 0 1 0 1 1 0 0 1 0 2 1 1 0 0 0 11 0 1429.699 E9PKP7;P17480;B4DNQ1;O00164;Q05BZ1 E9PKP7 201 211 UBTF Nucleolar transcription factor 1 yes no 3 0.030885 26.532 2 0.67213 1.0077 4.7409 2 Median NaN NaN NaN 0 0 Median 0.67213 1.0077 4.7409 2 0 Median 23270000 13725000 9544700 0 0 0 23270000 13725000 9544700 12098 1039 12417 43527;43528 65405;65406 65406 2 TPRPLTSAR QPRGRGQRGARQRRRTPRPLTSARAKAANV ARQRRRTPRPLTSARAKAANVQEPEKKKKR R T P A R A 1 2 0 0 0 0 0 0 0 0 1 0 0 0 2 1 2 0 0 0 0 0 9 1 997.56688 Q6PJJ2;P56182;Q53FR7;Q96J73 Q6PJJ2 441 449 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 3 0.00062498 90.696 3 1 0.84284 1.0312 12.656 4 Linear 0.77316 1.0479 2.2866 3 0 Plateau 0.58683 0.81045 NaN 1 0 Median 57298000 31911000 25387000 50605000 27878000 22727000 6693600 4033200 2660400 12099 1381 12418 43529;43530;43531;43532 65407;65408;65409;65410;65411 65410 5 TPSATFQQATK LPKGNKEDSLKKIKRTPSATFQQATKIKKL KIKRTPSATFQQATKIKKLRAGKLSPLKSK R T P T K I 2 0 0 0 0 2 0 0 0 0 0 1 0 1 1 1 3 0 0 0 0 0 11 0 1178.5932 Q03164;E9PR05;Q9UPD0;Q9Y6P1 Q03164 259 269 KMT2A;MLL Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 0.025259 46.706 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1980000 1980000 0 0 0 0 1980000 1980000 0 12100 1438 12419 43533 65412 65412 1 TPSGLLINSELEK IVRRRGRPPSTERIKTPSGLLINSELEKPQ IKTPSGLLINSELEKPQKVRKDKEGTPPLT K T P E K P 0 0 1 0 0 0 2 1 0 1 3 1 0 0 1 2 1 0 0 0 0 0 13 0 1399.7559 Q03164;E9PR05;Q9UPD0;Q9Y6P1 Q03164 314 326 KMT2A;MLL Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 3.3269E-12 155.47 4 1.0089 1.2637 11.108 4 Median 1.0089 1.2637 11.108 4 0 Median NaN NaN NaN 0 0 Median 44252000 22641000 21611000 44252000 22641000 21611000 0 0 0 12101 1438 12420 43534;43535;43536;43537 65413;65414;65415;65416;65417;65418;65419 65413 7 TPSLTVFLLGQSAR VPRLKELINISKKPKTPSLTVFLLGQSARD KTPSLTVFLLGQSARDAERAKDILCRLEHT K T P A R D 1 1 0 0 0 1 0 1 0 0 3 0 0 1 1 2 2 0 0 1 0 0 14 0 1488.83 P24928;A0A087WWE2;B4DET1 P24928 1136 1149 POLR2A DNA-directed RNA polymerase II subunit RPB1;DNA-directed RNA polymerase yes no 2 1.9833E-15 140.39 3 0.75724 1.0699 NaN 1 Median 0.75724 1.0699 NaN 1 0 Median NaN NaN NaN 0 0 Median 4446600 1356700 3089900 4446600 1356700 3089900 0 0 0 12102 1295 12421 43538;43539;43540 65420;65421;65422 65422 2 TPSSDVLVFDYTK RARYMPQNPHIIATKTPSSDVLVFDYTKHP TKTPSSDVLVFDYTKHPAKPDPSGECNPDL K T P T K H 0 0 0 2 0 0 0 0 0 0 1 1 0 1 1 2 2 0 1 2 0 0 13 0 1470.7242 Q09028;H0YF10;Q6FHQ0;Q16576;E9PC52;Q5JP01 Q6FHQ0 143 155 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 no no 2 6.5597E-65 252.97 4 2 0.84334 1.106 26.35 6 Median 0.75414 0.98861 11.305 4 0 Median 1.0647 1.6829 0.50061 2 0 Median 894190000 487750000 406440000 606670000 342830000 263840000 287520000 144920000 142600000 12103 1521;1452 12422 43541;43542;43543;43544;43545;43546 65423;65424;65425;65426;65427;65428;65429;65430;65431;65432;65433 65424 11 TPSTPVACSTPAQLK VGDKRSDPEQNEKLKTPSTPVACSTPAQLK TPSTPVACSTPAQLKRKIRKKSNWYLGTIK K T P L K R 2 0 0 0 1 1 0 0 0 0 1 1 0 0 3 2 3 0 0 1 0 0 15 0 1556.7868 A0A024R9G7;Q6PL18;A0A0B4J211 A0A024R9G7 1149 1163 ATAD2 ATPase family AAA domain-containing protein 2 yes no 2 0.0011486 116.84 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 612000 0 612000 612000 0 612000 0 0 0 12104 221 12423 43547 65434 65434 1 TPTCQSSTDCSPYAR QPPGKKPFLRNLLPRTPTCQSSTDCSPYAR TPTCQSSTDCSPYARILRSRRSPLLKSGPF R T P A R I 1 1 0 1 2 1 0 0 0 0 0 0 0 0 2 3 3 0 1 0 0 0 15 0 1729.7036 O95235 O95235 857 871 KIF20A Kinesin-like protein KIF20A yes yes 2 1.2696E-51 231.67 4 2 0.74956 1.0119 38.761 6 Median 0.78611 1.0511 7.9487 4 0 Median 0.35571 0.50881 7.1307 2 0 Median 78425000 48226000 30198000 53810000 30442000 23368000 24614000 17784000 6830500 12105 1215 12424 43548;43549;43550;43551;43552;43553 65435;65436;65437;65438;65439;65440;65441;65442;65443;65444;65445;65446;65447 65438 13 TPTPSTPGDTQPNTPAPVPPAEDGIKIEENSLKEEESIEGEK EENKKMSQPGSPSPKTPTPSTPGDTQPNTP EENSLKEEESIEGEKEVKSTAPETAIECTQ K T P E K E 2 0 2 2 0 1 8 3 0 3 1 3 0 0 8 3 5 0 0 1 0 0 42 2 4428.1344 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 1514 1555 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 4 1.6419E-05 44.698 4 2 0.73702 1.0174 18.372 5 Median 0.79937 0.89638 8.4624 3 0 Median 0.73087 1.2694 0.97068 2 0 Median 127220000 77577000 49643000 76456000 47724000 28732000 50764000 29853000 20911000 12106 428 12425 43554;43555;43556;43557;43558;43559 65448;65449;65450;65451;65452;65453;65454;65455;65456;65457;65458;65459;65460;65461;65462;65463;65464;65465;65466;65467;65468 65452 21 TPTQLEGATR CASCWIYWKKYGGLKTPTQLEGATRGTTEP YGGLKTPTQLEGATRGTTEPHSRGHLSRPE K T P T R G 1 1 0 0 0 1 1 1 0 0 1 0 0 0 1 0 3 0 0 0 0 0 10 0 1072.5513 A0A024R534;O94776 A0A024R534 406 415 MTA2 Metastasis-associated protein MTA2 yes no 2 7.3271E-08 128.52 3 2 0.75249 1.0231 28.166 5 Median 0.70491 0.96847 6.1484 3 0 Median 1.0252 1.6016 2.9872 2 0 Median 169850000 94896000 74957000 113820000 67396000 46423000 56034000 27499000 28534000 12107 133 12426 43560;43561;43562;43563;43564 65469;65470;65471;65472;65473;65474;65475;65476 65476 7 TPTSSPASSPLVAK VAFDPEQKPLHGVLKTPTSSPASSPLVAKK KTPTSSPASSPLVAKKPLTTTPRRRPRAMD K T P A K K 2 0 0 0 0 0 0 0 0 0 1 1 0 0 3 4 2 0 0 1 0 0 14 0 1341.714 Q14684 Q14684 728 741 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 3.5541E-22 143.97 6 2 0.57366 0.80457 15.296 4 Median 0.73643 0.93286 14.026 2 0 Median 0.49439 0.7472 3.5647 2 0 Median 60109000 31874000 28235000 29023000 12032000 16991000 31086000 19842000 11245000 12108 1493 12427 43565;43566;43567;43568;43569;43570;43571;43572 65477;65478;65479;65480;65481;65482;65483;65484;65485;65486;65487 65484 11 TPTTTPPETQQSPHLSLK KYTDEKETEGSKPTKTPTTTPPETQQSPHL TTPPETQQSPHLSLKDITNVSLYPVVKIRR K T P L K D 0 0 0 0 0 2 1 0 1 0 2 1 0 0 4 2 5 0 0 0 0 0 18 0 1962.0058 B5BUA4;Q5FBB7 B5BUA4 425 442 SGOL1 Shugoshin-like 1 yes no 3 2.3856E-06 42.068 2 0.23743 0.35121 NaN 1 Median NaN NaN NaN 0 0 Median 0.23743 0.35121 NaN 1 0 Median 19121000 16572000 2549400 0 0 0 19121000 16572000 2549400 12109 895 12428 43573;43574 65488;65489 65489 2 TPVEEVPAAIAPFQGR YKLVNNGEKLEFLHKTPVEEVPAAIAPFQG PVEEVPAAIAPFQGRVLIGVGKLLRVYDLG K T P G R V 3 1 0 0 0 1 2 1 0 1 0 0 0 1 3 0 1 0 0 2 0 0 16 0 1680.8835 A8K6V3;Q15393;B3KQH1;B3KM77 A8K6V3 943 958 SF3B3 Splicing factor 3B subunit 3 yes no 2 1.6327E-18 129.74 3 0.61974 0.77358 4.6855 3 Plateau 0.61974 0.77358 4.6855 3 0 Plateau NaN NaN NaN 0 0 Median 27087000 15567000 11520000 27087000 15567000 11520000 0 0 0 12110 628 12429 43575;43576;43577 65490;65491;65492;65493;65494;65495;65496 65495 7 TPVEPEVAIHR ______________________________ DTGKTPVEPEVAIHRIRITLTSRNVKSLEK K T P H R I 1 1 0 0 0 0 2 0 1 1 0 0 0 0 2 0 1 0 0 2 0 0 11 0 1246.667 P60866;E5RJX2;E5RIP1 P60866 9 19 RPS20 40S ribosomal protein S20 yes no 2;3 4.2476E-11 170.89 7 4 0.83801 1.1506 19.654 11 Median 0.80222 1.1111 6.4466 7 0 Median 1.0583 1.6948 3.9387 4 0 Linear 1286500000 680750000 605790000 1147300000 618110000 529200000 139230000 62638000 76591000 12111 1389 12430 43578;43579;43580;43581;43582;43583;43584;43585;43586;43587;43588 65497;65498;65499;65500;65501;65502;65503;65504;65505;65506;65507;65508;65509;65510;65511;65512;65513;65514;65515;65516 65500 20 TPVEVPVGGFK EELYSELQARETFEKTPVEVPVGGFKGRTV TFEKTPVEVPVGGFKGRTVTVWELISSEYF K T P F K G 0 0 0 0 0 0 1 2 0 0 0 1 0 1 2 0 1 0 0 3 0 0 11 0 1128.6179 Q15149;D3DWL0 Q15149 3374 3384 PLEC;PLEC1 Plectin yes no 2 4.0765E-05 131.62 3 2 0.82348 1.025 67.534 5 Median 0.82348 1.025 11.466 3 0 Plateau 2.0727 3.0882 10.42 2 0 Median 110340000 60204000 50133000 93914000 54857000 39057000 16423000 5347100 11076000 12112 1507 12431 43589;43590;43591;43592;43593 65517;65518;65519;65520;65521;65522;65523;65524 65520 8 TPVPSDIDISR KPGKWMIQYNNLNLKTPVPSDIDISRSCKP LNLKTPVPSDIDISRSCKPKPIGKLAREIG K T P S R S 0 1 0 2 0 0 0 0 0 2 0 0 0 0 2 2 1 0 0 1 0 0 11 0 1198.6194 A0A024R652;F5H2F4;B7Z809;P11586 A0A024R652 314 324 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.0028039 76.282 3 0.51854 0.71801 11.618 3 Plateau 0.51854 0.71801 11.618 3 0 Plateau NaN NaN NaN 0 0 Median 21185000 13537000 7647300 21185000 13537000 7647300 0 0 0 12113 154 12432 43594;43595;43596 65525;65526;65527 65527 3 TPVQYSQQQNSPQK AVGASFPLYEPAKMKTPVQYSQQQNSPQKH KTPVQYSQQQNSPQKHKNKDLYTTGRRESV K T P Q K H 0 0 1 0 0 5 0 0 0 0 0 1 0 0 2 2 1 0 1 1 0 0 14 0 1631.7903 P46013 P46013 347 360 MKI67 Antigen KI-67 yes yes 2 0 359.9 4 2 1.0085 1.3016 3.0912 6 Median 1.0097 1.2707 2.6107 4 0 Median 0.83623 1.3354 1.8975 2 0 Median 241790000 123690000 118100000 148010000 73214000 74795000 93783000 50476000 43307000 12114 1342 12433 43597;43598;43599;43600;43601;43602 65528;65529;65530;65531;65532;65533;65534;65535;65536;65537;65538;65539;65540 65538 13 TPVTQVNEVTGTLR LQKDVEDFLSPLLGKTPVTQVNEVTGTLRI KTPVTQVNEVTGTLRIKGYFDQELKAWLLE K T P L R I 0 1 1 0 0 1 1 1 0 0 1 0 0 0 1 0 4 0 0 3 0 0 14 0 1513.81 A0A024R578;Q13405;H0YDP7;Q59GE9 A0A024R578 135 148 MRPL49 39S ribosomal protein L49, mitochondrial yes no 2 0.044795 42.809 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12115 136 12434 43603 65541 65541 1 TPVVQNAASIVQPSPAHVGQQGLSK KLRQSQLQKENVVQKTPVVQNAASIVQPSP VQPSPAHVGQQGLSKLPSRPGAQGVEPQNL K T P S K L 3 0 1 0 0 4 0 2 1 1 1 1 0 0 3 3 1 0 0 4 0 0 25 0 2512.3398 A0A0U1RRM1;Q8WXI9;B3KSZ4 A0A0U1RRM1 200 224 GATAD2B Transcriptional repressor p66-beta yes no 3 1.7058E-37 147.78 4 2 0.80456 1.0031 27.101 5 Median 0.79588 0.98199 9.3857 4 0 Median 1.0748 1.7322 NaN 1 0 Median 165160000 91598000 73561000 112890000 60484000 52407000 52267000 31113000 21153000 12116 488 12435 43604;43605;43606;43607;43608;43609 65542;65543;65544;65545;65546;65547;65548;65549;65550;65551;65552 65549 11 TPVVTGTGPNFSLGELQGHLAYDLNPASTGLR TSGVFSVTELIQVSRTPVVTGTGPNFSLGE GHLAYDLNPASTGLRRTLPSTSSSGSKRHK R T P L R R 2 1 2 1 0 1 1 5 1 0 5 0 0 1 3 2 4 0 1 2 0 0 32 0 3281.6681 Q6FI30;B7Z4T6;P08651 Q6FI30 228 259 NFIC Nuclear factor 1;Nuclear factor 1 C-type yes no 3 1.5968E-61 153.12 4 1 0.68741 0.93251 23.432 5 Median 0.68139 0.91864 7.8826 4 0 Median 0.98566 1.5305 NaN 1 0 Median 137180000 80316000 56863000 106910000 64941000 41971000 30267000 15375000 14892000 12117 909 12436 43610;43611;43612;43613;43614 65553;65554;65555;65556;65557;65558;65559;65560;65561;65562;65563 65559 11 TPYTDVNIVTIR LYANVRPCVSIEGYKTPYTDVNIVTIRENT GYKTPYTDVNIVTIRENTEGEYSGIEHVIV K T P I R E 0 1 1 1 0 0 0 0 0 2 0 0 0 0 1 0 3 0 1 2 0 0 12 0 1390.7456 H0YLI6;H0YMU3;B7Z9J8;B4DJB4;H0YL72;B4DSY4;Q53GF8;P50213;H0YKD0 H0YLI6 85 96 IDH3A Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes no 2 0.024997 44.847 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2755600 0 2755600 0 0 0 2755600 0 2755600 12118 816 12437 43615 65564 65564 1 TQASSSFQDSSQPAGK KGADSELSTVPSVTKTQASSSFQDSSQPAG QASSSFQDSSQPAGKAEGIREPKVTGKLKQ K T Q G K A 2 0 0 1 0 3 0 1 0 0 0 1 0 1 1 5 1 0 0 0 0 0 16 0 1624.7329 P46087 P46087 670 685 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 2.3183E-84 249.98 4 2 0.69656 0.91871 7.0121 6 Median 0.75598 0.9429 8.2936 4 0 Median 0.54882 0.8738 3.9429 2 0 Median 285320000 175010000 110320000 154410000 90760000 63652000 130910000 84245000 46665000 12119 1343 12438 43616;43617;43618;43619;43620;43621 65565;65566;65567;65568;65569;65570;65571;65572;65573;65574;65575;65576 65566 12 TQEDKEPISENIEVSK KDVVHGLKKGNFFFKTQEDKEPISENIEVS QEDKEPISENIEVSKELQIPALSTRDNENQ K T Q S K E 0 0 1 1 0 1 4 0 0 2 0 2 0 0 1 2 1 0 0 1 0 0 16 1 1844.9004 Q562F6;B7Z7S9 Q562F6 650 665 SGOL2 Shugoshin-like 2 yes no 3 0.0022209 35.492 1 1.0232 1.253 NaN 1 Median 1.0232 1.253 NaN 1 0 Median NaN NaN NaN 0 0 Median 27313000 12870000 14443000 27313000 12870000 14443000 0 0 0 12120 1546 12439 43622 65577;65578 65577 2 TQELESHQSECLHCIQVAEAEVK KTTALDQLSEKMKEKTQELESHQSECLHCI SECLHCIQVAEAEVKEKTELLQTLSSDVSE K T Q V K E 2 0 0 0 2 3 5 0 2 1 2 1 0 0 0 2 1 0 0 2 0 0 23 0 2724.2483 P49454 P49454 2084 2106 CENPF Centromere protein F yes yes 3 8.6036E-20 127.49 2 1.1088 1.4511 3.3135 2 Median 1.1088 1.4511 3.3135 2 0 Median NaN NaN NaN 0 0 Median 4405400 2008600 2396800 4405400 2008600 2396800 0 0 0 12121 1351 12440 43623;43624 65579;65580;65581;65582 65579 4 TQGELFLLLDSR EVLLEHYLFTGNSSKTQGELFLLLDSRGAF SSKTQGELFLLLDSRGAFHTKGYYAAVEAK K T Q S R G 0 1 0 1 0 1 1 1 0 0 4 0 0 1 0 1 1 0 0 0 0 0 12 0 1390.7456 B4DSY1;A0A024RCU1;Q9NPK3;Q96BC0;O76046;Q15477;Q59F56;B4E0N1;B4DM01 B4DSY1 133 144 SKIV2L;SKI2W Helicase SKI2W yes no 2 0.028551 66.267 1 0.76443 1.029 NaN 1 Median 0.76443 1.029 NaN 1 0 Median NaN NaN NaN 0 0 Median 15703000 6849900 8853500 15703000 6849900 8853500 0 0 0 12122 304 12441 43625 65583 65583 1 TQGFILNTK TELELQMKLWMYNKKTQGFILNTKINMPHE WMYNKKTQGFILNTKINMPHEDCITALCFC K T Q T K I 0 0 1 0 0 1 0 1 0 1 1 1 0 1 0 0 2 0 0 0 0 0 9 0 1020.5604 A8K330;Q8IWA0 A8K330 428 436 WDR75 WD repeat-containing protein 75 yes no 2 0.014596 56.434 2 0.96979 1.1996 7.2165 2 Median 0.96979 1.1996 7.2165 2 0 Median NaN NaN NaN 0 0 Median 36520000 18152000 18368000 36520000 18152000 18368000 0 0 0 12123 588 12442 43626;43627 65584;65585 65584 2 TQGFLALFSGDTGEIK VHTVSLHEIDVINSRTQGFLALFSGDTGEI QGFLALFSGDTGEIKSEVREQINAKVAEWR R T Q I K S 1 0 0 1 0 1 1 3 0 1 2 1 0 2 0 1 2 0 0 0 0 0 16 0 1682.8516 Q9Y230;B3KNL2;M0R0Y3 Q9Y230 254 269 RUVBL2 RuvB-like 2 yes no 2 2.4794E-61 231.69 4 2 0.67025 0.83826 37.162 6 Median 0.73024 0.91625 11.66 4 0 Linear 1.0022 1.5853 1.9589 2 0 Median 234060000 137690000 96370000 166850000 104380000 62469000 67207000 33306000 33901000 12124 1801 12443 43628;43629;43630;43631;43632;43633 65586;65587;65588;65589;65590;65591;65592;65593;65594;65595;65596;65597 65590 12 TQGQDSLEAQLSSLESSR NEPKMDNCHSVSRVKTQGQDSLEAQLSSLE QDSLEAQLSSLESSRRVHTSTPSDKNLLDT K T Q S R R 1 1 0 1 0 3 2 1 0 0 3 0 0 0 0 5 1 0 0 0 0 0 18 0 1934.9181 Q03164 Q03164 2791 2808 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 2.1675E-08 103.39 5 1 1.0065 1.4216 16.232 2 Median 1.1666 1.5944 NaN 1 0 Median 0.86846 1.2674 NaN 1 0 Median 21363000 10528000 10835000 7297700 2862300 4435300 14065000 7665200 6399800 12125 1438 12444 43634;43635;43636;43637;43638;43639 65598;65599;65600;65601;65602;65603 65601 6 TQIAPGSQTVLGIGPGPADLIDK KMLGLTVSLIQDAGRTQIAPGSQTVLGIGP TVLGIGPGPADLIDKVTGHLKLY_______ R T Q D K V 2 0 0 2 0 2 0 4 0 3 2 1 0 0 3 1 2 0 0 1 0 0 23 0 2247.2111 Q96ME4;J3KQ48;Q9Y3E5 Q96ME4 149 171 PTRH2 Peptidyl-tRNA hydrolase 2, mitochondrial yes no 2 2.7077E-32 163.45 2 1 0.55704 0.71097 60.982 3 Median 0.51093 0.65419 11.77 2 0 Median 1.2404 1.8627 NaN 1 0 Median 33863000 20840000 13023000 20856000 13920000 6936700 13006000 6920100 6086400 12126 1134 12445 43640;43641;43642 65604;65605;65606;65607;65608 65605 5 TQILAASYELHK LNEAWADLLELIDTRTQILAASYELHKFYH DTRTQILAASYELHKFYHDAKEIFGRIQDK R T Q H K F 2 0 0 0 0 1 1 0 1 1 2 1 0 0 0 1 1 0 1 0 0 0 12 0 1372.7351 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24 B2ZZ89 1798 1809 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 0.041232 14.5 1 0.92942 1.1862 NaN 1 Median 0.92942 1.1862 NaN 1 0 Median NaN NaN NaN 0 0 Median 13706000 7190000 6516300 13706000 7190000 6516300 0 0 0 12127 346 12446 43643 65609 65609 1 TQIQSVEPYTK GGVTFTWVEKDISGKTQIQSVEPYTKQQLN ISGKTQIQSVEPYTKQQLNNMSFAEIIMGY K T Q T K Q 0 0 0 0 0 2 1 0 0 1 0 1 0 0 1 1 2 0 1 1 0 0 11 0 1292.6612 G8JLH9;B4DNP0;B7ZA24;B4DVR6;B5BTZ6;P40763 G8JLH9 534 544 STAT3 Signal transducer and activator of transcription;Signal transducer and activator of transcription 3 yes no 2 0.0047219 65.347 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3067700 3067700 0 3067700 3067700 0 0 0 0 12128 840 12447 43644 65610;65611 65611 2 TQIVTEIISEIR LVERLLHIIIDDNKRTQIVTEIISEIRAPI NKRTQIVTEIISEIRAPIVTVGVNNDPADV R T Q I R A 0 1 0 0 0 1 2 0 0 4 0 0 0 0 0 1 2 0 0 1 0 0 12 0 1400.7875 H0Y9Z8;Q9BPX3;Q6NUR1 Q9BPX3 459 470 NCAPG Condensin complex subunit 3 no no 2 6.4361E-67 221.5 4 1 0.67654 0.94132 3.0659 5 Median 0.68455 0.94462 1.2897 4 0 Median 0.53472 0.88186 NaN 1 0 Median 670670000 426890000 243790000 207480000 124560000 82920000 463200000 302330000 160870000 12129 1706;1096 12448 43645;43646;43647;43648;43649 65612;65613;65614;65615;65616;65617;65618;65619;65620 65618 9 TQIVTEIISEIRAPIVTVGVNNDPADVR LVERLLHIIIDDNKRTQIVTEIISEIRAPI PIVTVGVNNDPADVRKKELKMAEIKVKLIE R T Q V R K 2 2 2 2 0 1 2 1 0 5 0 0 0 0 2 1 3 0 0 5 0 0 28 1 3018.635 H0Y9Z8;Q9BPX3;Q6NUR1 Q9BPX3 459 486 NCAPG Condensin complex subunit 3 no no 3 0.00019523 57.673 2 0.70454 0.95447 4.9173 2 Median 0.70454 0.95447 4.9173 2 0 Median NaN NaN NaN 0 0 Median 14441000 8551100 5889500 14441000 8551100 5889500 0 0 0 12130 1706;1096 12449 43650;43651 65621;65622 65622 2 TQLEELEDELQATEDAK EKSKRALEQQVEEMKTQLEELEDELQATED LEELEDELQATEDAKLRLEVNLQAMKAQFE K T Q A K L 2 0 0 2 0 2 5 0 0 0 3 1 0 0 0 0 2 0 0 0 0 0 17 0 1960.9113 A0A024R1N1;P35579;Q6ZNL4;O14729;O14794;Q66K75;A0A0U4BW16;P35580 A0A024R1N1 1539 1555 MYH9;FLJ00279;MYH11;MYH10 Myosin-9;Myosin-10 no no 2 0 449.7 4 1 0.99966 1.3158 81.001 5 Median 0.99321 1.2996 10.565 4 0 Median 4.7085 7.5562 NaN 1 0 Median 669310000 298010000 371300000 576600000 279700000 296900000 92712000 18312000 74400000 12131 61;490;1320 12450 43652;43653;43654;43655;43656 65623;65624;65625;65626;65627;65628;65629;65630;65631;65632 65624 9 TQLLQDVQDENK LEAMLKERESDLSSKTQLLQDVQDENKLFK SSKTQLLQDVQDENKLFKSQIEQLKQQNYQ K T Q N K L 0 0 1 2 0 3 1 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 12 0 1429.7049 A0A024R663;Q86UP2;G3V4Y7;H0YJV5 A0A024R663 960 971 KTN1 Kinectin yes no 2 0.0024152 63.073 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5850900 5850900 0 0 0 0 5850900 5850900 0 12132 155 12451 43657 65633 65633 1 TQLYEYLQNR ILHLCTQVIEISEYRTQLYEYLQNRMMAIA ISEYRTQLYEYLQNRMMAIAPNVTVMVGEL R T Q N R M 0 1 1 0 0 2 1 0 0 0 2 0 0 0 0 0 1 0 2 0 0 0 10 0 1326.6568 Q9Y2X3;B3KN82;H7BZ72 Q9Y2X3 269 278 NOP58 Nucleolar protein 58 yes no 2 0.00015008 129.42 4 2 0.66274 0.91456 8.0832 6 Median 0.6689 0.92527 2.3515 4 0 Median 0.48951 0.79774 1.6158 2 0 Median 443900000 273480000 170420000 291600000 170740000 120860000 152300000 102740000 49558000 12133 1810 12452 43658;43659;43660;43661;43662;43663 65634;65635;65636;65637;65638;65639;65640;65641;65642;65643;65644;65645;65646 65637 13 TQMAEVLPSPR QVGLPGKGGKAKGKKTQMAEVLPSPRGQRV KGKKTQMAEVLPSPRGQRVIPRITIEMKAE K T Q P R G 1 1 0 0 0 1 1 0 0 0 1 0 1 0 2 1 1 0 0 1 0 0 11 0 1227.6282 P11388 P11388 1205 1215 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0014897 72.652 3 2 0.57272 0.85161 30.778 4 Median 0.84128 1.1354 7.9542 2 0 Median 0.41381 0.67034 1.1237 2 0 Median 136980000 95237000 41739000 16611000 10571000 6039500 120360000 84665000 35699000 12134 1256 12453;12454 43664;43665;43666;43667;43668 65647;65648;65649;65650;65651;65652;65653;65654;65655 65649 511 9 TQNVLGLQK PALSTRDNENQCDYRTQNVLGLQKQITNMY NQCDYRTQNVLGLQKQITNMYPVQQNESKV R T Q Q K Q 0 0 1 0 0 2 0 1 0 0 2 1 0 0 0 0 1 0 0 1 0 0 9 0 999.57129 Q562F6;B7Z7S9 Q562F6 685 693 SGOL2 Shugoshin-like 2 yes no 2 0.0013743 109.01 3 1 0.88301 1.1435 12.523 4 Median 0.96258 1.2174 8.6223 3 0 Plateau 0.93214 1.3657 NaN 1 0 Median 35896000 18893000 17003000 28929000 15044000 13886000 6966400 3849400 3117000 12135 1546 12455 43669;43670;43671;43672 65656;65657;65658;65659;65660 65659 5 TQPAVATAATAAEK GGSLESDGCPKEPAKTQPAVATAATAAEKY KTQPAVATAATAAEKYKHRGEGERKDIVSS K T Q E K Y 6 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 3 0 0 1 0 0 14 0 1328.6936 A0A140VKC4;D9ZNA4;D5L9I5;D3YJ43;D0UU70;A8K079;E9LUH4;P51608;E9LUH3;C6KG45;A0A0S2Z401;A0A075BRI2;A0A075BRJ5;C6FGV0;A0A0S2Z3Y9;A0A0S2Z400;Q59FJ6 A0A140VKC4 448 461 MECP2 Methyl-CpG-binding protein 2 yes no 2 0.015551 34.75 1 0.59477 0.85392 NaN 1 Median NaN NaN NaN 0 0 Median 0.59477 0.85392 NaN 1 0 Median 6391400 3560000 2831300 0 0 0 6391400 3560000 2831300 12136 512 12456 43673 65661;65662 65661 2 TQPDGTSVPGEPASPISQR CEEGTPLSITSKLPRTQPDGTSVPGEPASP GTSVPGEPASPISQRLPPKVESLESLYFTP R T Q Q R L 1 1 0 1 0 2 1 2 0 1 0 0 0 0 4 3 2 0 0 1 0 0 19 0 1922.9334 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1730 1748 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 6.4892E-06 104.16 4 2 0.20921 0.30832 75.328 3 Median 0.81097 1.1048 NaN 1 0 Median 0.20627 0.29994 3.8952 2 0 Median 33048000 24996000 8052100 6073200 3418100 2655000 26975000 21578000 5397100 12137 148;1499 12457 43674;43675;43676;43677;43678;43679 65663;65664;65665;65666;65667;65668;65669 65669 7 TQPFQAQPPQQK LMAYGVEPALCDRLRTQPFQAQPPQQKAAV RLRTQPFQAQPPQQKAAVLAFLVHELNGST R T Q Q K A 1 0 0 0 0 5 0 0 0 0 0 1 0 1 3 0 1 0 0 0 0 0 12 0 1396.7099 J3QK86;J3KPG5;F8VU39;Q9UIF9 J3QK86 928 939 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 0.0020097 83.647 3 1 0.97328 1.2286 26.198 3 Median 0.87943 1.1059 14.874 2 0 Median 1.1873 1.6757 NaN 1 0 Median 25023000 11586000 13437000 18937000 8631400 10306000 6086000 2954700 3131200 12138 1062 12458 43680;43681;43682;43683 65670;65671;65672;65673;65674;65675 65671 6 TQRPADVIFATVR MSKDSLLGDKGQTARTQRPADVIFATVREL ARTQRPADVIFATVRELVSGGRSVRFSEAE R T Q V R E 2 2 0 1 0 1 0 0 0 1 0 0 0 1 1 0 2 0 0 2 0 0 13 1 1472.81 B2RBA6;A0A0S2Z4A5;P33993;B3KUD7;B4DDF5;C6EMX8;Q9H4N9 B2RBA6 654 666 MCM7 DNA helicase;DNA replication licensing factor MCM7 yes no 3 0.018371 28.351 1 1.1718 1.644 NaN 1 Median NaN NaN NaN 0 0 Median 1.1718 1.644 NaN 1 0 Median 8824900 3311600 5513200 0 0 0 8824900 3311600 5513200 12139 464 12459 43684 65676 65676 1 TQSSASLAASYAAQQHPQAAASYR AYGAQPSATLAAPYRTQSSASLAASYAAQQ SYAAQQHPQAAASYRGQPGNAYDGAGQPSA R T Q Y R G 8 1 0 0 0 4 0 0 1 0 1 0 0 0 1 5 1 0 2 0 0 0 24 0 2464.1731 A0A0S2Z4Z0;Q96PK6;Q59GV2;B4DNG4 A0A0S2Z4Z0 518 541 RBM14 RNA-binding protein 14 yes no 3 8.0248E-58 184.35 4 2 0.52729 0.71049 43.318 6 Median 0.48366 0.64486 14.563 4 0 Median 1.0125 1.4424 3.5033 2 0 Median 89331000 56665000 32666000 73166000 48790000 24376000 16165000 7875300 8289600 12140 472 12460 43685;43686;43687;43688;43689;43690 65677;65678;65679;65680;65681;65682;65683;65684;65685;65686;65687;65688;65689;65690;65691;65692;65693 65680 17 TQTLDQENQQLQDQLR QLCDLNAELKRCRERTQTLDQENQQLQDQL QTLDQENQQLQDQLRDAQQQVKALGTERTT R T Q L R D 0 1 1 2 0 6 1 0 0 0 3 0 0 0 0 0 2 0 0 0 0 0 16 0 1956.9501 A0A024RCS7;Q9BW19;B4DMA8;B4E063 A0A024RCS7 157 172 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 9.1452E-113 272.65 3 0.74678 1.0022 14.928 3 Median 0.74678 1.0022 14.928 3 0 Median NaN NaN NaN 0 0 Median 20813000 12039000 8774000 20813000 12039000 8774000 0 0 0 12141 303 12461 43691;43692;43693 65694;65695;65696;65697;65698;65699;65700 65697 7 TQTPAAQPVPR GMTLKSVTEGASARKTQTPAAQPVPRPVSQ SARKTQTPAAQPVPRPVSQARPPPNQKKGS K T Q P R P 2 1 0 0 0 2 0 0 0 0 0 0 0 0 3 0 2 0 0 1 0 0 11 0 1164.6251 Q6P1J9;A0A1B0GUB2;A0A0S2Z5M9;A0A0S2Z5N1 Q6P1J9 332 342 CDC73 Parafibromin yes no 2 0.0041159 56.432 1 1 2.6753 3.3996 NaN 1 Median NaN NaN NaN 0 0 Median 2.6753 3.3996 NaN 1 0 Median 4653800 1153600 3500200 0 0 0 4653800 1153600 3500200 12142 1590 12462 43694;43695 65701;65702 65702 2 TQTPAAQPVPRPVSQARPPPNQK GMTLKSVTEGASARKTQTPAAQPVPRPVSQ VPRPVSQARPPPNQKKGSRTPIIIIPAATT K T Q Q K K 3 2 1 0 0 4 0 0 0 0 0 1 0 0 7 1 2 0 0 2 0 0 23 2 2464.3299 Q6P1J9;A0A1B0GUB2;A0A0S2Z5M9 Q6P1J9 332 354 CDC73 Parafibromin yes no 4 1.6215E-08 61.703 3 0.72927 0.89817 13.349 3 Median 0.72927 0.89817 13.349 3 0 Median NaN NaN NaN 0 0 Median 41475000 24179000 17295000 41475000 24179000 17295000 0 0 0 12143 1590 12463 43696;43697;43698 65703;65704;65705;65706;65707;65708 65706 6 TQTPPLGQTPQLGLK QPQITMIPPSAQPPRTQTPPLGQTPQLGLK TQTPPLGQTPQLGLKTNPPLIQEKPAKTSK R T Q L K T 0 0 0 0 0 3 0 2 0 0 3 1 0 0 3 0 3 0 0 0 0 0 15 0 1577.8777 D3DQV9;Q59G42;B4DZF2;P78344;H0Y3P2;Q2TU89 D3DQV9 506 520 EIF4G2;AAG1 Eukaryotic translation initiation factor 4 gamma 2 no no 2 4.8024E-05 101.72 4 1 0.33574 0.42586 16.821 3 Median 0.33574 0.42586 16.821 3 0 Median NaN NaN NaN 0 0 Median 35222000 21519000 13703000 28951000 21519000 7432100 6271300 0 6271300 12144 877 12464 43699;43700;43701;43702;43703 65709;65710;65711;65712;65713;65714;65715;65716 65715 8 TQVAAVETGGITQHIGAFLVSLPSGEK HVDHGKTTLLDKFRKTQVAAVETGGITQHI QHIGAFLVSLPSGEKITFLDTPGHAAFSAM K T Q E K I 3 0 0 0 0 2 2 4 1 2 2 1 0 1 1 2 3 0 0 3 0 0 27 0 2709.4337 Q6P1N2;Q8IWH1;P46199 Q6P1N2 203 229 MTIF2 Translation initiation factor IF-2, mitochondrial yes no 3 3.4149E-05 73.058 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 598570 598570 0 598570 598570 0 0 0 0 12145 1344 12465 43704 65717 65717 1 TQVEASEESALNHLQNPGDAAEGR RSKLWEMDNMLIQIKTQVEASEESALNHLQ ALNHLQNPGDAAEGRAAKRCEKSESS____ K T Q G R A 4 1 2 1 0 2 4 2 1 0 2 0 0 0 1 2 1 0 0 1 0 0 24 0 2522.1633 A0A087WTY9;B3KQA0;Q9Y605 A0A087WTY9 69 92 MRFAP1 MORF4 family-associated protein 1 yes no 3 2.8066E-11 101.05 5 1 0.44577 0.62944 74.444 4 Median 0.40828 0.57689 39.944 3 0 Median 1.4179 1.9163 NaN 1 0 Median 20560000 13621000 6938800 15153000 11689000 3464100 5406600 1931900 3474700 12146 338 12466 43705;43706;43707;43708;43709;43710 65718;65719;65720;65721;65722;65723;65724;65725 65719 8 TQVELLEAPTPALK DNYFLVGPYTEQGVRTQVELLEAPTPALKR RTQVELLEAPTPALKRTLDSMNSKGCKVYF R T Q L K R 2 0 0 0 0 1 2 0 0 0 3 1 0 0 2 0 2 0 0 1 0 0 14 0 1508.845 P13807;Q53ER0;A8K6K7 P13807 75 88 GYS1 Glycogen [starch] synthase, muscle yes no 2 1.6271E-49 220.29 5 2 0.76185 0.9564 59.782 5 Median 0.79001 0.97388 7.672 4 0 Median 0.15651 0.2529 NaN 1 0 Median 218200000 148700000 69502000 144510000 80364000 64145000 73689000 68332000 5356500 12147 1265 12467 43711;43712;43713;43714;43715;43716;43717 65726;65727;65728;65729;65730;65731;65732;65733;65734;65735;65736 65726 11 TQVELLEAPTPALKR DNYFLVGPYTEQGVRTQVELLEAPTPALKR TQVELLEAPTPALKRTLDSMNSKGCKVYFG R T Q K R T 2 1 0 0 0 1 2 0 0 0 3 1 0 0 2 0 2 0 0 1 0 0 15 1 1664.9461 P13807;Q53ER0;A8K6K7 P13807 75 89 GYS1 Glycogen [starch] synthase, muscle yes no 3 0.0057672 64.374 3 2 0.33749 0.47987 101.06 4 Median 0.91279 1.2059 15.085 2 0 Median 0.13284 0.21085 1.0742 2 0 Median 47804000 33617000 14187000 19761000 9587100 10174000 28043000 24030000 4012700 12148 1265 12468 43718;43719;43720;43721;43722 65737;65738;65739;65740;65741 65741 5 TQVTVQYMQDR LRRNGTLPWLRPDSKTQVTVQYMQDRGAVL PDSKTQVTVQYMQDRGAVLPIRVHTIVISV K T Q D R G 0 1 0 1 0 3 0 0 0 0 0 0 1 0 0 0 2 0 1 2 0 0 11 0 1367.6503 B4DEX8;A0A140VJP5;P31153 B4DEX8 182 192 MAT2A S-adenosylmethionine synthase;S-adenosylmethionine synthase isoform type-2 yes no 2 0.0061812 47.894 1 3.1798 4.3251 NaN 1 Median NaN NaN NaN 0 0 Median 3.1798 4.3251 NaN 1 0 Median 5566700 1590900 3975800 0 0 0 5566700 1590900 3975800 12149 501 12469 43723 65742 65742 175 1 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ ENTTSEAGLPQGEARTRDDGDEEGLLTHSE LEHSQDTDADDGALQ_______________ R T R L Q - 2 1 0 7 0 2 6 3 2 0 4 0 0 0 0 2 3 0 0 0 0 0 32 1 3526.4728 A8K4T9;Q53GL6;Q9UKM9 A8K4T9 260 291 RALY RNA-binding protein Raly yes no 4 0.0091259 30.496 2 0.90298 1.2189 18.283 2 Median 0.90298 1.2189 18.283 2 0 Median NaN NaN NaN 0 0 Median 30241000 15535000 14705000 30241000 15535000 14705000 0 0 0 12150 608 12470 43724;43725 65743;65744;65745 65745 2 TRDELDQFLDK VGYDLDGRRIYKPLRTRDELDQFLDKMDDP KPLRTRDELDQFLDKMDDPDYWRTVQDPMT R T R D K M 0 1 0 3 0 1 1 0 0 0 2 1 0 1 0 0 1 0 0 0 0 0 11 1 1378.6729 B2RDN4;Q14137;A8K3R2;B4DEN9;A0A075B729 B2RDN4 165 175 BOP1 Ribosome biogenesis protein BOP1 yes no 2 6.1229E-05 120.03 4 1 0.94275 1.2977 7.5295 5 Median 0.9593 1.2705 6.9429 4 0 Median 0.83393 1.3856 NaN 1 0 Median 233350000 113040000 120310000 204180000 100020000 104160000 29174000 13022000 16152000 12151 738 12471 43726;43727;43728;43729;43730 65746;65747;65748;65749;65750;65751;65752;65753 65750 8 TREDNDLDSQVSQEGLGPVLQPQPK FHRFDDVWPMDPHPRTREDNDLDSQVSQEG VSQEGLGPVLQPQPKSYFKSISVTKITKPD R T R P K S 0 1 1 3 0 4 2 2 0 0 3 1 0 0 3 2 1 0 0 2 0 0 25 1 2749.3519 E9PIQ7;A0A0S2Z565;A0A0S2Z591;O00165 E9PIQ7 53 77 HAX1 HCLS1-associated protein X-1 yes no 3 4.995E-05 82.302 2 0.46624 0.60158 NaN 1 Median 0.46624 0.60158 NaN 1 0 Median NaN NaN NaN 0 0 Median 1983700 1568100 415610 1983700 1568100 415610 0 0 0 12152 475 12472 43731;43732 65754;65755 65755 2 TREPVTDNVEK GIDEVIVPLPTWNARTREPVTDNVEKFAIE WNARTREPVTDNVEKFAIETELIYKYSPFR R T R E K F 0 1 1 1 0 0 2 0 0 0 0 1 0 0 1 0 2 0 0 2 0 0 11 1 1286.6466 Q9Y6X9 Q9Y6X9 154 164 MORC2 MORC family CW-type zinc finger protein 2 yes yes 2 0.04151 81.525 1 0.74497 0.99605 NaN 1 Median 0.74497 0.99605 NaN 1 0 Median NaN NaN NaN 0 0 Median 2525100 1405900 1119200 2525100 1405900 1119200 0 0 0 12153 1834 12473 43733 65756 65756 1 TREQDVEVLEPLK MIVQNSNESISEQFRTREQDVEVLEPLKCE FRTREQDVEVLEPLKCELVSGESTGNCEDR R T R L K C 0 1 0 1 0 1 3 0 0 0 2 1 0 0 1 0 1 0 0 2 0 0 13 1 1554.8253 E7ETD6;Q12830;F5GXF5 E7ETD6 1308 1320 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.032925 51.092 1 0.51632 0.66582 NaN 1 Median 0.51632 0.66582 NaN 1 0 Median NaN NaN NaN 0 0 Median 4782500 3431500 1351000 4782500 3431500 1351000 0 0 0 12154 1015 12474 43734 65757 65757 1 TRETGLSYTEDDK DKLQTLSPALKAPEKTRETGLSYTEDDKKA EKTRETGLSYTEDDKKASPEHRIILRTRIA K T R D K K 0 1 0 2 0 0 2 1 0 0 1 1 0 0 0 1 3 0 1 0 0 0 13 1 1513.6896 B7Z8H0;Q96F82;A8K794;Q13415 B7Z8H0 296 308 ORC1L;ORC1 Origin recognition complex subunit 1 yes no 2 0.0014415 113.67 2 0.81101 1.0892 44.749 2 Median 0.81101 1.0892 44.749 2 0 Median NaN NaN NaN 0 0 Median 4589400 2506100 2083300 4589400 2506100 2083300 0 0 0 12155 630 12475 43735;43736 65758;65759 65759 2 TRLEQEIATYR MEQQNQEYKILLDVKTRLEQEIATYRRLLE LDVKTRLEQEIATYRRLLEGEDAHLSSSQF K T R Y R R 1 2 0 0 0 1 2 0 0 1 1 0 0 0 0 0 2 0 1 0 0 0 11 1 1378.7205 CON__P02533;P02533;A0A024R1X6;CON__A2A4G1;Q13092;CON__Q61782;A8MT21;CON__P35900;CON__Q9D312;P35900;CON__Q04695;Q04695;F5GWP8;CON__Q9QWL7;Q14666;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8 CON__P02533 406 416 KRT14;K14;KRT15;KRT20;KRT17;KRT16 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 20;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 16 no no 2;3 9.3361E-10 166.69 3 1 0.063691 0.093626 39.412 2 Median 0.089287 0.12372 NaN 1 0 Median 0.045433 0.070854 NaN 1 0 Median 76918000 72319000 4598900 50730000 48417000 2313000 26188000 23902000 2286000 + 12156 949;958;965 12476 43737;43738;43739;43740 65760;65761;65762;65763;65764 65760 5 TRLQQELDDLLVDLDHQR HEEKVAAYDKLEKTKTRLQQELDDLLVDLD QQELDDLLVDLDHQRQSACNLEKKQKKFDQ K T R Q R Q 0 2 0 4 0 3 1 0 1 0 5 0 0 0 0 0 1 0 0 1 0 0 18 1 2206.1342 A0A024R1N1;P35579;A0A0U4BW16 A0A024R1N1 1416 1433 MYH9 Myosin-9 no no 3;4 5.0824E-90 203.56 9 1 0.96227 1.309 60.087 10 Median 0.95821 1.3077 8.4226 9 0 Median 5.3979 8.3021 NaN 1 0 Median 563710000 270660000 293050000 543750000 267390000 276370000 19958000 3277600 16680000 12157 61;490 12477 43741;43742;43743;43744;43745;43746;43747;43748;43749;43750 65765;65766;65767;65768;65769;65770;65771;65772;65773;65774;65775;65776;65777;65778;65779;65780;65781;65782;65783;65784;65785 65776 20 TRNDVFYLQPER KFYEFYLSKCPESLRTRNDVFYLQPERSCI SLRTRNDVFYLQPERSCIAESPLWYSVIPM R T R E R S 0 2 1 1 0 1 1 0 0 0 1 0 0 1 1 0 1 0 1 1 0 0 12 1 1536.7685 A6NHN7;A6NHB5;Q14202 A6NHN7 1223 1234 ZMYM3 Zinc finger MYM-type protein 3 yes no 3 0.0079163 30.998 1 0.82196 1.0917 NaN 1 Median 0.82196 1.0917 NaN 1 0 Median NaN NaN NaN 0 0 Median 8645000 4638400 4006600 8645000 4638400 4006600 0 0 0 12158 565 12478 43751 65786;65787 65786 2 TRPAANPIQFTLNK YGWKQGLKTGMYYLRTRPAANPIQFTLNKE RTRPAANPIQFTLNKEKLKDKEKVSKEEEE R T R N K E 2 1 2 0 0 1 0 0 0 1 1 1 0 1 2 0 2 0 0 0 0 0 14 1 1569.8627 B4E0I8;B4DNN4;P23921;B4DS95;Q53GZ5;E9PL69;B4DXB0;B4DXD1 B4E0I8 644 657 RRM1 Ribonucleoside-diphosphate reductase;Ribonucleoside-diphosphate reductase large subunit yes no 2 0.0080688 51.841 1 0.46752 0.60017 NaN 1 Median 0.46752 0.60017 NaN 1 0 Median NaN NaN NaN 0 0 Median 6222500 4742000 1480500 6222500 4742000 1480500 0 0 0 12159 839 12479 43752 65788 65788 1 TRPSSTVIK LPKKAPPKAKTPAKKTRPSSTVIKKPSGGS KTPAKKTRPSSTVIKKPSGGSSKKPATSAR K T R I K K 0 1 0 0 0 0 0 0 0 1 0 1 0 0 1 2 2 0 0 1 0 0 9 1 987.57129 Q5SSJ5;B4E0N8 Q5SSJ5 509 517 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.0003951 121.05 2 1 0.59549 0.77695 6.6838 3 Median 0.59607 0.78287 1.0732 2 0 Median 0.41565 0.69781 NaN 1 0 Median 310250000 202150000 108110000 238340000 149000000 89338000 71915000 53147000 18768000 12160 1565 12480 43753;43754;43755 65789;65790;65791;65792 65790 4 TRTPASINATPANINLADLTR YQDPVPGITPSSSSRTRTPASINATPANIN INATPANINLADLTRAVNALPQNMTSQMFS R T R T R A 4 2 3 1 0 0 0 0 0 2 2 0 0 0 2 1 4 0 0 0 0 0 21 1 2209.1815 Q7KZ85 Q7KZ85 1530 1550 SUPT6H Transcription elongation factor SPT6 yes yes 3 0.022798 69.72 2 0.62842 0.82591 NaN 1 Median 0.62842 0.82591 NaN 1 0 Median NaN NaN NaN 0 0 Median 4157300 2761000 1396400 4157300 2761000 1396400 0 0 0 12161 1609 12481 43756;43757 65793;65794 65794 2 TSAAACAVTDLSDDSDFDEK PKAKSTKPKPKSVSKTSAAACAVTDLSDDS CAVTDLSDDSDFDEKAKLKYYKEIEDRQKL K T S E K A 4 0 0 5 1 0 1 0 0 0 1 1 0 1 0 3 2 0 0 1 0 0 20 0 2116.8743 Q9NQZ2 Q9NQZ2 354 373 UTP3 Something about silencing protein 10 yes yes 2 1.1424E-18 161.49 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4362100 4362100 0 4362100 4362100 0 0 0 0 12162 1755 12482 43758;43759 65795;65796 65795 2 TSAQVVLDGLVDK LHIVALIAQKGNFSKTSAQVVLDGLVDKIG SKTSAQVVLDGLVDKIGDVKCGNNAKEAMT K T S D K I 1 0 0 2 0 1 0 1 0 0 2 1 0 0 0 1 1 0 0 3 0 0 13 0 1343.7296 Q14008 Q14008 677 689 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.011051 85.924 3 0.8305 1.0591 17.54 2 Median 0.8305 1.0591 17.54 2 0 Median NaN NaN NaN 0 0 Median 12382000 5233600 7148500 12382000 5233600 7148500 0 0 0 12163 1481 12483 43760;43761;43762 65797;65798;65799 65797 3 TSASLEMNQGVSEER HQLESSLSPVEAFAKTSASLEMNQGVSEER TSASLEMNQGVSEERIHLGSSPKKGGNCDL K T S E R I 1 1 1 0 0 1 3 1 0 0 1 0 1 0 0 3 1 0 0 1 0 0 15 0 1636.7363 Q4G1A1;A8K3X3;Q9H410;Q5JW53 Q4G1A1 22 36 DSN1 Kinetochore-associated protein DSN1 homolog yes no 2 7.5721E-05 63.76 2 0.35294 0.50486 16.974 2 Median NaN NaN NaN 0 0 Median 0.35294 0.50486 16.974 2 0 Median 16603000 12196000 4407800 0 0 0 16603000 12196000 4407800 12164 599 12484 43763;43764 65800;65801 65801 204 2 TSCGSPNYAAPEVISGR DFGLSNMMSDGEFLRTSCGSPNYAAPEVIS CGSPNYAAPEVISGRDCNIIRILTSQFTNY R T S G R D 2 1 1 0 1 0 1 2 0 1 0 0 0 0 2 3 1 0 1 1 0 0 17 0 1764.8101 Q96E92;B2RA25;A0MZF5;A0A087WXX9;P54646;Q13131 Q96E92 174 190 PRKAA1;PRKAA2 5-AMP-activated protein kinase catalytic subunit alpha-2;5-AMP-activated protein kinase catalytic subunit alpha-1 yes no 2 0.0018637 74.649 2 0.15885 0.21893 NaN 1 Median 0.15885 0.21893 NaN 1 0 Median NaN NaN NaN 0 0 Median 2929100 2606100 323010 2929100 2606100 323010 0 0 0 12165 360 12485 43765;43766 65802;65803 65803 2 TSDFNTFLAQEGCTK IFHEGMKYWSCCRRKTSDFNTFLAQEGCTK TSDFNTFLAQEGCTKGKHMWTKKDAGKKVV K T S T K G 1 0 1 1 1 1 1 1 0 0 1 1 0 2 0 1 3 0 0 0 0 0 15 0 1717.7618 A0A024R3C3;A0A024R394;Q9UHD1;E9PHZ2 A0A024R3C3 180 194 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 2 4.0584E-05 77.64 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3076700 3076700 0 3076700 3076700 0 0 0 0 12166 98 12486 43767;43768 65804;65805 65804 2 TSEIYVHR DIPKVQHVIHYQVPRTSEIYVHRSGRTARA IHYQVPRTSEIYVHRSGRTARATNEGLGLM R T S H R S 0 1 0 0 0 0 1 0 1 1 0 0 0 0 0 1 1 0 1 1 0 0 8 0 1003.5087 B4DKV2;G3V529;Q9GZR7;F5GYL3;B4E300;B4DM03;A0A087WXU8;Q7Z4X3;Q7Z4W0;B4DGI6 B4DKV2 574 581 DDX24 ATP-dependent RNA helicase DDX24 yes no 2 0.00071346 114.6 1 2 0.33154 0.42146 NaN 1 Median NaN NaN NaN 0 0 Median 0.33154 0.42146 NaN 1 0 Median 10046000 9146800 899140 3790200 3790200 0 6255700 5356600 899140 12167 822 12487 43769;43770;43771 65806;65807;65808 65806 3 TSESVLSVEHGQPVESVLLFPSGGLLVSAGGR ITGSYDHTVKMFDARTSESVLSVEHGQPVE LLFPSGGLLVSAGGRYVKVWDMLKGGQLLV R T S G R Y 1 1 0 0 0 1 3 5 1 0 5 0 0 1 2 6 1 0 0 5 0 0 32 0 3207.6776 Q8TED0;H0Y8P4 Q8TED0 196 227 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 3 2.9681E-61 123.45 4 1 0.86793 1.1802 17.151 5 Median 0.89004 1.2199 6.9947 4 0 Median 0.55104 0.84904 NaN 1 0 Median 238730000 127130000 111600000 215560000 110550000 105010000 23168000 16579000 6589200 12168 1660 12488 43772;43773;43774;43775;43776 65809;65810;65811;65812;65813;65814;65815;65816;65817;65818;65819 65816 11 TSFEDGSGECEVFCK SITDLVPYSITLRWKTSFEDGSGECEVFCK TSFEDGSGECEVFCKNHPAPFSKVITFHKK K T S C K N 0 0 0 1 2 0 3 2 0 0 0 1 0 2 0 2 1 0 0 1 0 0 15 0 1750.6815 D6RJ96;B3KNM0;E9PDE8;B4DXT2;Q53ZP9;A0A140VKE7;O95757;B4DZR0 D6RJ96 367 381 HSPA4L Heat shock 70 kDa protein 4L yes no 2 1.5345E-05 127.87 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2300900 2300900 0 2300900 2300900 0 0 0 0 12169 513 12489 43777;43778 65820;65821 65820 2 TSFEIAELK LEVKTREKLEAAKKKTSFEIAELKERLKAS EAAKKKTSFEIAELKERLKASRETINCLKN K T S L K E 1 0 0 0 0 0 2 0 0 1 1 1 0 1 0 1 1 0 0 0 0 0 9 0 1036.5441 O95619;F8W0J4 O95619 190 198 YEATS4 YEATS domain-containing protein 4 yes no 2 0.013614 66.27 2 1 0.58091 0.74248 53.318 3 Median 0.42703 0.55338 41.57 2 0 Median 0.90581 1.1957 NaN 1 0 Median 10946000 5699500 5246000 8093700 4308400 3785300 2851800 1391100 1460600 12170 1222 12490 43779;43780;43781 65822;65823;65824 65823 3 TSFFLGEVGNAAK GLYEDCSSCFQAMGKTSFFLGEVGNAAKMM GKTSFFLGEVGNAAKMMLIVNMVQGSFMAT K T S A K M 2 0 1 0 0 0 1 2 0 0 1 1 0 2 0 1 1 0 0 1 0 0 13 0 1339.6772 K7EMM8;D3DUE6;Q49A26;D3DUE7 Q49A26 394 406 GLYR1;N-PAC Putative oxidoreductase GLYR1 no no 2 5.8319E-07 95.483 3 0.88478 1.0993 5.5404 3 Plateau 0.88478 1.0993 5.5404 3 0 Plateau NaN NaN NaN 0 0 Median 105970000 56979000 48994000 105970000 56979000 48994000 0 0 0 12171 982;1533 12491 43782;43783;43784 65825;65826;65827 65827 3 TSFFLVR LIRLDVDTKLNEQLKTSFFLVREDTKAAVL TKLNEQLKTSFFLVREDTKAAVLLHLLHNV K T S V R E 0 1 0 0 0 0 0 0 0 0 1 0 0 2 0 1 1 0 0 1 0 0 7 0 868.48069 Q8TDD1 Q8TDD1 313 319 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 0.024246 103.28 2 1.3048 1.7734 NaN 1 Median 1.3048 1.7734 NaN 1 0 Median NaN NaN NaN 0 0 Median 12662000 8804900 3857300 12662000 8804900 3857300 0 0 0 12172 1658 12492 43785;43786 65828;65829 65828 2 TSFFQALGITTK EVTVPAQNTGLGPEKTSFFQALGITTKISR PEKTSFFQALGITTKISRGTIEILSDVQLI K T S T K I 1 0 0 0 0 1 0 1 0 1 1 1 0 2 0 1 3 0 0 0 0 0 12 0 1312.7027 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VWS0;F8VW21;F8VU65;Q6NSF2;B4E3D5;G3V210;Q8NHW5;F8VPE8 Q53HW2 135 146 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 6.6336E-10 141.1 4 2 0.75157 1.0001 8.6506 6 Median 0.75358 0.97888 2.4176 4 0 Median 0.72389 1.1466 5.1269 2 0 Median 575390000 328850000 246540000 357780000 203340000 154440000 217610000 125520000 92097000 12173 281 12493 43787;43788;43789;43790;43791;43792 65830;65831;65832;65833;65834;65835;65836;65837;65838;65839 65833 10 TSFLLNLR APRCPENAFFLDHVRTSFLLNLRRQLPQNV FFLDHVRTSFLLNLRRQLPQNVLDTSWPTP R T S L R R 0 1 1 0 0 0 0 0 0 0 3 0 0 1 0 1 1 0 0 0 0 0 8 0 962.55492 F5H6E2;B7Z3E5;O00159;D3DTH7 F5H6E2 790 797 MYO1C Unconventional myosin-Ic yes no 2 0.015134 85.265 2 1 0.69496 0.94611 8.7146 2 Median 0.69496 0.94611 8.7146 2 0 Median NaN NaN NaN 0 0 Median 12456000 7112600 5342900 12456000 7112600 5342900 0 0 0 12174 905 12494 43793;43794;43795 65840;65841;65842 65841 3 TSFTQEQIEALEK AQMRLQLKRKLQRNRTSFTQEQIEALEKEF NRTSFTQEQIEALEKEFERTHYPDVFARER R T S E K E 1 0 0 0 0 2 3 0 0 1 1 1 0 1 0 1 2 0 0 0 0 0 13 0 1522.7515 Q59GD2;D1KF47;Q66SS1;B3KQG1;F1T0F8;D3DQZ8;P26367 Q59GD2 178 190 PAX6 Paired box protein Pax-6 yes no 2 3.2468E-06 93.258 2 2 0.64841 0.98227 33.688 3 Plateau 0.43409 0.5346 NaN 1 0 Median 0.64053 0.95639 3.7761 2 0 Median 21891000 13367000 8524200 4526800 1773800 2753000 17365000 11593000 5771200 12175 770 12495 43796;43797;43798;43799 65843;65844;65845;65846 65844 3 TSGGLLSEAPNEK LEVDQFLEDVRLQERTSGGLLSEAPNEKLF ERTSGGLLSEAPNEKLFFVDTGSKEKGLTK R T S E K L 1 0 1 0 0 0 2 2 0 0 2 1 0 0 1 2 1 0 0 0 0 0 13 0 1301.6463 Q7L4X7;Q96CS0;Q53YP0;B4E1N4;Q9NZM5;B4DVK1;B4DND9;B4E013 Q7L4X7 69 81 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes no 2 2.2928E-13 133.81 5 1 0.71464 0.90661 12.922 4 Median 0.90645 1.0996 11.494 3 0 Plateau 0.53797 0.81031 NaN 1 0 Median 63973000 37962000 26011000 50327000 29045000 21282000 13646000 8917500 4728200 12176 887 12496 43800;43801;43802;43803;43804;43805 65847;65848;65849;65850;65851;65852;65853;65854;65855 65852 9 TSGGVNPEPCPICAR GQLLYLTNLEKSQDKTSGGVNPEPCPICAR TSGGVNPEPCPICARQLGKQWAVLTCGHCF K T S A R Q 1 1 1 0 2 0 1 2 0 1 0 0 0 0 3 1 1 0 0 1 0 0 15 0 1613.729 A0A0D9SFM0;Q149N8;B3KX98 A0A0D9SFM0 1427 1441 SHPRH E3 ubiquitin-protein ligase SHPRH yes no 2 7.7555E-05 73.067 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12177 436 12497 43806 65856 65856 1 TSGHLLLGVVR SVESIISPKVKMALRTSGHLLLGVVRIYHR MALRTSGHLLLGVVRIYHRKAKYLLADCNE R T S V R I 0 1 0 0 0 0 0 2 1 0 3 0 0 0 0 1 1 0 0 2 0 0 11 0 1150.6822 A0A024R9J0;O60216;B3KUT8;E5RJW1;E5RJK5;E5RFV8;E5RIN7;F6KSS9;Q9H4I0;A0A140T8W2 A0A024R9J0 55 65 RAD21;RAD21L;RAD21L1 Double-strand-break repair protein rad21 homolog;Double-strand-break repair protein rad21-like protein 1 yes no 3 0.0046364 73.841 2 0.43536 0.57552 21.81 2 Median 0.43536 0.57552 21.81 2 0 Median NaN NaN NaN 0 0 Median 10465000 7048800 3415900 10465000 7048800 3415900 0 0 0 12178 223 12498 43807;43808 65857;65858;65859;65860 65857 4 TSGSVYITLK EQFLTELTRLFQKCRTSGSVYITLKKYDGR FQKCRTSGSVYITLKKYDGRTKPIPKKGTV R T S L K K 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 2 2 0 1 1 0 0 10 0 1067.5863 P37108;H0YLA2 P37108 22 31 SRP14 Signal recognition particle 14 kDa protein yes no 2 0.0011469 113.62 4 1.3273 1.6652 12.513 3 Median 1.3273 1.6652 12.513 3 0 Median NaN NaN NaN 0 0 Median 25722000 8317200 17405000 25722000 8317200 17405000 0 0 0 12179 1326 12499 43809;43810;43811;43812 65861;65862;65863;65864;65865;65866;65867 65863 7 TSICFQYEVSAVHNLQPTQPSLIR IGDFIDVSEGPLIPRTSICFQYEVSAVHNL SAVHNLQPTQPSLIRRFQGVSLPVHLR___ R T S I R R 1 1 1 0 1 3 1 0 1 2 2 0 0 1 2 3 2 0 1 2 0 0 24 0 2787.4014 C9JG87;Q9NYK5 C9JG87 262 285 MRPL39 39S ribosomal protein L39, mitochondrial yes no 3 0.0091253 40.137 1 0.33112 0.47004 NaN 1 Median 0.33112 0.47004 NaN 1 0 Median NaN NaN NaN 0 0 Median 1598900 943830 655040 1598900 943830 655040 0 0 0 12180 937 12500 43813 65868 65868 1 TSIDAYDNFDNISLAQR LNNLFITEEDYQALRTSIDAYDNFDNISLA IDAYDNFDNISLAQRLEKHELIEFRRIAAY R T S Q R L 2 1 2 3 0 1 0 0 0 2 1 0 0 1 0 2 1 0 1 0 0 0 17 0 1941.9068 A0A087WVQ6;Q00610;K7EJJ5;J3KS13 A0A087WVQ6 1486 1502 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 0.0043221 110.8 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 959150 959150 0 959150 959150 0 0 0 0 12181 350 12501 43814 65869 65869 1 TSIHFVVHPLPGTEDQLNDR ______________________________ VVHPLPGTEDQLNDRLREVSEKLNKYNLNS M T S D R L 0 1 1 2 0 1 1 1 2 1 2 0 0 1 2 1 2 0 0 2 0 0 20 0 2274.1393 E7EMW7;O95071 E7EMW7 2 21 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 3 2.8552E-05 71.592 2 0.40602 0.56188 NaN 1 Median 0.40602 0.56188 NaN 1 0 Median NaN NaN NaN 0 0 Median 10555000 7296000 3258800 10555000 7296000 3258800 0 0 0 12182 1008 12502 43815;43816 65870;65871 65871 2 TSIIATISPASLNLEETLSTLEYAHR KLTRILQDSLGGRTRTSIIATISPASLNLE LNLEETLSTLEYAHRAKNILNKPEVNQKLT R T S H R A 3 1 1 0 0 0 3 0 1 3 4 0 0 0 1 4 4 0 1 0 0 0 26 0 2829.476 P52732;B2RAM6 P52732 330 355 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 3 0.0012154 29.174 1 0.43738 0.58718 NaN 1 Median 0.43738 0.58718 NaN 1 0 Median NaN NaN NaN 0 0 Median 37455000 26615000 10840000 37455000 26615000 10840000 0 0 0 12183 1366 12503 43817 65872 65872 1 TSIIEAQYLR IDYSQMDELALLSLRTSIIEAQYLRYHDIE LLSLRTSIIEAQYLRYHDIEPGAVVKGTVL R T S L R Y 1 1 0 0 0 1 1 0 0 2 1 0 0 0 0 1 1 0 1 0 0 0 10 0 1192.6452 Q14690;B4DH82;B4DES7 Q14690 437 446 PDCD11 Protein RRP5 homolog yes no 2 3.0271E-05 128.86 4 2 0.94194 1.2799 15.651 5 Median 0.98241 1.3217 13.554 4 0 Median 0.68254 1.0474 NaN 1 0 Median 131790000 71575000 60216000 101080000 48935000 52149000 30707000 22640000 8067100 12184 1494 12504 43818;43819;43820;43821;43822;43823 65873;65874;65875;65876;65877;65878;65879;65880;65881 65877 9 TSILAAANPISGHYDR ISITKAGVKATLNARTSILAAANPISGHYD SILAAANPISGHYDRSKSLKQNINLSAPIM R T S D R S 3 1 1 1 0 0 0 1 1 2 1 0 0 0 1 2 1 0 1 0 0 0 16 0 1684.8533 Q4ZG57;Q14566;B4DRF6 Q4ZG57 461 476 MCM6 DNA replication licensing factor MCM6 yes no 2;3 5.2296E-05 125.36 2 2 3.2836 4.3926 157.77 3 Plateau 0.20718 0.2809 NaN 1 0 Median 3.3113 4.3176 2.4335 2 0 Median 14787000 7261100 7525700 5177700 4073600 1104100 9609100 3187500 6421600 12185 1488 12505 43824;43825;43826;43827 65882;65883;65884;65885 65883 4 TSLFCSLCCTTSYK CKNFEMLSHVDRNGKTSLFCSLCCTTSYKV KTSLFCSLCCTTSYKVKQAGLTGPPRPCSF K T S Y K V 0 0 0 0 3 0 0 0 0 0 2 1 0 1 0 3 3 0 1 0 0 0 14 0 1726.7365 A6NHN7;A6NHB5;Q14202 A6NHN7 522 535 ZMYM3 Zinc finger MYM-type protein 3 yes no 2 0.0075371 47.288 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2170900 2170900 0 2170900 2170900 0 0 0 0 12186 565 12506 43828 65886 65886 1 TSLGNVVLLLK YQHELEETTVPEIQRTSLGNVVLLLKSLGI EIQRTSLGNVVLLLKSLGIHDLMHFDFLDP R T S L K S 0 0 1 0 0 0 0 1 0 0 4 1 0 0 0 1 1 0 0 2 0 0 11 0 1155.7227 Q9P186;Q5SQH5;A0A140T8Y5;B4DZ28;Q5SQH4;O60231 Q9P186 277 287 DHX16;DBP2 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes no 2 0.0014198 101.64 3 0.54344 0.66332 17.913 3 Median 0.54344 0.66332 17.913 3 0 Median NaN NaN NaN 0 0 Median 7120700 4187900 2932900 7120700 4187900 2932900 0 0 0 12187 492 12507 43829;43830;43831 65887;65888;65889;65890;65891 65889 5 TSNFALVGSYTLSLSSVGNTK HSSVMASPGGLSAVRTSNFALVGSYTLSLS VGSYTLSLSSVGNTKFVLDKVPFLSSLEGH R T S T K F 1 0 2 0 0 0 0 2 0 0 3 1 0 1 0 5 3 0 1 2 0 0 21 0 2145.0954 B4DSL6;A8K5D9;A0A024RA49;Q9NQW6;H7C1C2;H7C3S1 B4DSL6 813 833 ANLN Actin-binding protein anillin yes no 2 1.5932E-07 63.29 2 0.73996 0.96542 NaN 1 Median 0.73996 0.96542 NaN 1 0 Median NaN NaN NaN 0 0 Median 3682800 1132800 2550000 3682800 1132800 2550000 0 0 0 12188 235 12508 43832;43833 65892;65893 65893 2 TSNPLVLEEASASQAGSR LKAKQEKRSEKDTLKTSNPLVLEEASASQA PLVLEEASASQAGSRKESRLESSGKNKSYD K T S S R K 3 1 1 0 0 1 2 1 0 0 2 0 0 0 1 4 1 0 0 1 0 0 18 0 1815.8963 B4DRU9;A0A0S2Z5L1;Q9NUQ8;A0A0S2Z645 B4DRU9 104 121 ABCF3 ATP-binding cassette sub-family F member 3 yes no 2 0.035554 32.295 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3721900 1882200 1839700 1882200 1882200 0 1839700 0 1839700 12189 481 12509 43834;43835 65894;65895 65894 2 TSPEMDIQNPDDGAR AERIEINRNEKKPMKTSPEMDIQNPDDGAR TSPEMDIQNPDDGARKPIPRDKVTENKRCL K T S A R K 1 1 1 3 0 1 1 1 0 1 0 0 1 0 2 1 1 0 0 0 0 0 15 0 1644.705 P46013;B4DRH3 P46013 3127 3141 MKI67 Antigen KI-67 yes no 2 7.2673E-29 154.67 7 8 0.90954 1.3888 10.781 15 Median 0.88223 1.1898 11.096 7 0 Median 0.96236 1.4424 4.159 8 0 Median 438860000 229600000 209260000 62306000 33338000 28968000 376560000 196270000 180290000 12190 1342 12510;12511 43836;43837;43838;43839;43840;43841;43842;43843;43844;43845;43846;43847;43848;43849;43850 65896;65897;65898;65899;65900;65901;65902;65903;65904;65905;65906;65907;65908;65909;65910;65911;65912;65913;65914;65915;65916;65917;65918;65919;65920 65913 582 25 TSPFELYQFFVR LGKSAGNAVWLNRDKTSPFELYQFFVRQPD RDKTSPFELYQFFVRQPDDSVERD______ K T S V R Q 0 1 0 0 0 1 1 0 0 0 1 0 0 3 1 1 1 0 1 1 0 0 12 0 1532.7664 H0YHS6;Q9Y2Z4 H0YHS6 271 282 YARS2 Tyrosine--tRNA ligase;Tyrosine--tRNA ligase, mitochondrial yes no 2 0.0013834 104.01 3 0.57928 0.79589 7.0515 2 Median 0.57928 0.79589 7.0515 2 0 Median NaN NaN NaN 0 0 Median 6880300 3721600 3158700 6880300 3721600 3158700 0 0 0 12191 1101 12512 43851;43852;43853 65921;65922;65923;65924;65925 65922 5 TSPHGILDILVHER CSYFALWSLESVVSRTSPHGILDILVHERS RTSPHGILDILVHERSLNRGVPPSYPPPEQ R T S E R S 0 1 0 1 0 0 1 1 2 2 2 0 0 0 1 1 1 0 0 1 0 0 14 0 1585.8576 Q8WYP5;Q96M44 Q8WYP5 440 453 AHCTF1 Protein ELYS yes no 3;4 4.4316E-07 101.3 5 3 0.75826 1.0379 9.8551 8 Median 0.78581 1.0448 6.6046 5 0 Median 0.66326 1.0577 10.513 3 0 Plateau 209490000 125560000 83936000 140190000 78584000 61602000 69306000 46972000 22334000 12192 1670 12513 43854;43855;43856;43857;43858;43859;43860;43861 65926;65927;65928;65929;65930;65931;65932;65933;65934;65935;65936;65937;65938;65939;65940;65941;65942;65943 65943 18 TSQDFLFSQLQYLPFSNK CACSDTSGPTMRYLRTSQDFLFSQLQYLPF DFLFSQLQYLPFSNKEYEISMLNQMSWLMK R T S N K E 0 0 1 1 0 3 0 0 0 0 3 1 0 3 1 3 1 0 1 0 0 0 18 0 2162.0684 Q92621;B4DE72;U3KQ97 Q92621 1086 1103 NUP205 Nuclear pore complex protein Nup205 yes no 2 0.00024912 50.897 1 0.26587 0.32806 NaN 1 Median 0.26587 0.32806 NaN 1 0 Median NaN NaN NaN 0 0 Median 3892000 3091100 800810 3892000 3091100 800810 0 0 0 12193 1673 12514 43862 65944 65944 1 TSQNSELNNMQDLVEDYKK IDSLKRYLDGLTAERTSQNSELNNMQDLVE SELNNMQDLVEDYKKKYEDEINKRTAAEND R T S K K K 0 0 3 2 0 2 2 0 0 0 2 2 1 0 0 2 1 0 1 1 0 0 19 1 2255.0376 CON__P35908;P35908 CON__P35908 254 272 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 3 1.7918E-06 69.081 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7530200 7530200 0 1817500 1817500 0 5712700 5712700 0 + 12194 964 12515;12516 43863;43864 65945;65946;65947 65947 345 3 TSQPPVPQGEAEEDSQGK VRFRISNSSTANRVKTSQPPVPQGEAEEDS PPVPQGEAEEDSQGKEGPSGSGDSQLSASS K T S G K E 1 0 0 1 0 3 3 2 0 0 0 1 0 0 3 2 1 0 0 1 0 0 18 0 1882.8545 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 725 742 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 7.9034E-07 108.66 3 1 0.64342 0.87179 24.487 4 Median 0.56751 0.71921 23.271 3 0 Median 0.72949 1.1009 NaN 1 0 Median 25732000 15406000 10326000 17271000 10371000 6900300 8461400 5035800 3425600 12195 1457 12517 43865;43866;43867;43868 65948;65949;65950;65951;65952;65953;65954 65949 7 TSSAETPTIPLGSAVEAIK HQLWLSVEALKYSMKTSSAETPTIPLGSAV ETPTIPLGSAVEAIKANCSDNEFTQALTAA K T S I K A 3 0 0 0 0 0 2 1 0 2 1 1 0 0 2 3 3 0 0 1 0 0 19 0 1870.9888 B4DS66;C9J406;H7C463;Q16891;B9A067;B4DQY2;B4DKR1;B4DT20 Q16891 582 600 IMMT MICOS complex subunit MIC60 no no 2 9.5508E-32 177.36 4 2 0.52644 0.65745 67.811 5 Median 0.51541 0.64849 3.0223 4 0 Median 1.8342 2.9464 NaN 1 0 Median 122790000 57803000 64986000 73717000 47502000 26215000 49072000 10301000 38771000 12196 1524;854 12518 43869;43870;43871;43872;43873;43874 65955;65956;65957;65958;65959;65960;65961;65962;65963;65964;65965;65966 65957 12 TSSAQVEGGVHSLHSYEK VRAMMYSGELKFEKRTSSAQVEGGVHSLHS AQVEGGVHSLHSYEKRLF____________ R T S E K R 1 0 0 0 0 1 2 2 2 0 1 1 0 0 0 4 1 0 1 2 0 0 18 0 1914.9072 P12268;H0Y4R1 P12268 494 511 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2;3 1.8532E-24 159.64 5 0.36188 0.45614 12.539 4 Median 0.36188 0.45614 12.539 4 0 Median NaN NaN NaN 0 0 Median 151800000 107000000 44794000 151800000 107000000 44794000 0 0 0 12197 1261 12519 43875;43876;43877;43878;43879 65967;65968;65969;65970;65971;65972;65973 65967 7 TSSDNNVSVTNVSVAK SLSKPKFSGFTFKKKTSSDNNVSVTNVSVA SSDNNVSVTNVSVAKTPVLRNKDVNVTEDF K T S A K T 1 0 3 1 0 0 0 0 0 0 0 1 0 0 0 4 2 0 0 4 0 0 16 0 1620.7955 H0YNU5;B2RAN0;P54132;Q3B7X0;H0YLV8 H0YNU5 41 56 BLM Bloom syndrome protein yes no 2 4.6713E-06 167.22 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4728200 4728200 0 4728200 4728200 0 0 0 0 12198 725 12520 43880;43881;43882 65974;65975;65976;65977 65977 4 TSSGDASSLSIEETNK REKRDDGYEAAASSKTSSGDASSLSIEETN SSGDASSLSIEETNKLRAKLGLKPLEVNAI K T S N K L 1 0 1 1 0 0 2 1 0 1 1 1 0 0 0 5 2 0 0 0 0 0 16 0 1624.7428 O43290;E9PQI8 O43290 110 125 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes no 2 7.1803E-07 119.21 2 2 0.93709 1.2891 3.5133 2 Median NaN NaN NaN 0 0 Median 0.93709 1.2891 3.5133 2 0 Median 9979700 6182100 3797700 2136800 2136800 0 7842900 4045300 3797700 12199 1184 12521 43883;43884;43885;43886 65978;65979;65980;65981 65978 4 TSSLDPNDQVAMGR DDFYHQLLRELIERKTSSLDPNDQVAMGRQ KTSSLDPNDQVAMGRQWLAIQKLRSKIHKK K T S G R Q 1 1 1 2 0 1 0 1 0 0 1 0 1 0 1 2 1 0 0 1 0 0 14 0 1489.6831 Q9NY61;A0A087WWS8;A0A087WTH8 Q9NY61 476 489 AATF Protein AATF yes no 2 0.00014335 65.695 2 0.6032 0.94185 0.74427 2 Median NaN NaN NaN 0 0 Median 0.6032 0.94185 0.74427 2 0 Median 51220000 31814000 19406000 0 0 0 51220000 31814000 19406000 12200 1767 12522 43887;43888 65982;65983;65984 65983 818 3 TSSVFEDPVISK ELKKTQLIKAAPAGKTSSVFEDPVISKFTN AGKTSSVFEDPVISKFTNMMMIGGNKVLAR K T S S K F 0 0 0 1 0 0 1 0 0 1 0 1 0 1 1 3 1 0 0 2 0 0 12 0 1307.6609 A0A024R8L0;J3QLS3;Q9Y2R9;J3QQS1;J3QKW2 A0A024R8L0 82 93 MRPS7 28S ribosomal protein S7, mitochondrial yes no 2 0.0055512 60.641 2 0.36473 0.45498 NaN 1 Median 0.36473 0.45498 NaN 1 0 Median NaN NaN NaN 0 0 Median 6265400 5469900 795420 6265400 5469900 795420 0 0 0 12201 199 12523 43889;43890 65985;65986 65986 2 TSSVSLTATFRPQEDFCFLSSK YVQQMKRGPDHQPAKTSSVSLTATFRPQED ATFRPQEDFCFLSSKKYKLSEIHHLHPEYV K T S S K K 1 1 0 1 1 1 1 0 0 0 2 1 0 3 1 5 3 0 0 1 0 0 22 1 2507.2002 Q7Z2W4;A8K9U6;C9J6P4 Q7Z2W4 705 726 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 3 0.00016173 57.41 3 0.58154 0.75673 31.097 3 Median 0.58154 0.75673 31.097 3 0 Median NaN NaN NaN 0 0 Median 17980000 10987000 6993200 17980000 10987000 6993200 0 0 0 12202 1613 12524 43891;43892;43893 65987;65988;65989;65990;65991 65991 4 TSTAPAASPNVR FRTVHGGLRLLGIRRTSTAPAASPNVRRLE IRRTSTAPAASPNVRRLEYKPIKKVMVANR R T S V R R 3 1 1 0 0 0 0 0 0 0 0 0 0 0 2 2 2 0 0 1 0 0 12 0 1170.5993 A0A024R5C5;P11498 A0A024R5C5 19 30 PC Pyruvate carboxylase;Pyruvate carboxylase, mitochondrial yes no 2 0.0041904 52.725 1 0.25517 0.34131 NaN 1 Median 0.25517 0.34131 NaN 1 0 Median NaN NaN NaN 0 0 Median 1868400 1503300 365160 1868400 1503300 365160 0 0 0 12203 139 12525 43894 65992 65992 1 TSTLPAVLYSCGICK PKERKPSKKEGGTQKTSTLPAVLYSCGICK TSTLPAVLYSCGICKKNHDQHLLLLCDTCK K T S C K K 1 0 0 0 2 0 0 1 0 1 2 1 0 0 1 2 2 0 1 1 0 0 15 0 1668.8215 A0A0U1RRH6;O94880;B4DG57 A0A0U1RRH6 718 732 PHF14 PHD finger protein 14 yes no 2 0.0010783 107.97 4 0.80685 1.0209 9.5774 4 Median 0.80685 1.0209 9.5774 4 0 Median NaN NaN NaN 0 0 Median 40712000 24665000 16047000 40712000 24665000 16047000 0 0 0 12204 487 12526 43895;43896;43897;43898 65993;65994;65995;65996;65997;65998 65993 6 TSTSQAVFR VNQDTRLDNRVIDLRTSTSQAVFRLQSGIC RVIDLRTSTSQAVFRLQSGICHLFRETLIN R T S F R L 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 2 2 0 0 1 0 0 9 0 995.50361 D3DP78;A0A140VJW5;P14868;Q53T60;C9J7S3;C9JLC1 D3DP78 156 164 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.0080775 78.77 1 1.7391 2.5224 NaN 1 Median NaN NaN NaN 0 0 Median 1.7391 2.5224 NaN 1 0 Median 6311100 2010000 4301000 0 0 0 6311100 2010000 4301000 12205 504 12527 43899 65999 65999 1 TSTTGSILNLNLDR FSPQLSAPITTKTDKTSTTGSILNLNLDRS KTSTTGSILNLNLDRSKAEMDLKELSESVQ K T S D R S 0 1 2 1 0 0 0 1 0 1 3 0 0 0 0 2 3 0 0 0 0 0 14 0 1503.7893 A0A087WYS3;H7C4X9;A0A087WVZ6;Q9ULU4;A0A087WV57;A6H8Y8;Q5JV90 A0A087WYS3 509 522 ZMYND8;DKFZp564P1772 Protein kinase C-binding protein 1 yes no 2 1.2034E-14 163.45 3 2 0.68254 0.9437 11.004 3 Median 0.68254 0.9437 11.004 3 0 Median NaN NaN NaN 0 0 Median 36679000 11054000 25625000 20962000 11054000 9908700 15716000 0 15716000 12206 365 12528 43900;43901;43902;43903;43904 66000;66001;66002;66003;66004;66005;66006;66007 66001 8 TSTTGVATTQSPTPR NPSSSVPPPSAGSVKTSTTGVATTQSPTPR TSTTGVATTQSPTPRSHSPSASQSGSQLRN K T S P R S 1 1 0 0 0 1 0 1 0 0 0 0 0 0 2 2 6 0 0 1 0 0 15 0 1503.7529 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;E9PMT2;A0A0A0MTE2 A0A1P7ZIM8 1190 1204 LMO7 LIM domain only protein 7 yes no 2 2.7708E-06 120.03 4 2 1.0503 1.4369 43.786 4 Median 0.91476 1.2204 30.481 3 0 Median 1.9991 2.5456 NaN 1 0 Median 23022000 12801000 10221000 19494000 12107000 7387000 3527900 693480 2834400 12207 525 12529 43905;43906;43907;43908;43909;43910 66008;66009;66010;66011;66012;66013;66014;66015;66016 66008 8 TSVPAPLNSCLLK ICDVHNPGQDLVIHRTSVPAPLNSCLLKVG HRTSVPAPLNSCLLKVGSKTEVAECKEKFA R T S L K V 1 0 1 0 1 0 0 0 0 0 3 1 0 0 2 2 1 0 0 1 0 0 13 0 1398.7541 Q9UKN8;Q05CN7;F2Z356 Q9UKN8 107 119 GTF3C4 General transcription factor 3C polypeptide 4 yes no 2 0.028082 65.695 2 0.64744 0.82567 NaN 1 Median 0.64744 0.82567 NaN 1 0 Median NaN NaN NaN 0 0 Median 3594600 2199200 1395400 3594600 2199200 1395400 0 0 0 12208 1789 12530 43911;43912 66017;66018 66017 2 TSVSQNVIPSSAQK FYLSVGSPSVLLDAKTSVSQNVIPSSAQKR KTSVSQNVIPSSAQKRETYTFENSVNMLPS K T S Q K R 1 0 1 0 0 2 0 0 0 1 0 1 0 0 1 4 1 0 0 2 0 0 14 0 1444.7522 Q03188;H0Y8J2 Q03188 167 180 CENPC Centromere protein C yes no 2 1.008E-27 190.66 3 2 0.64214 0.85908 11.208 5 Median 0.72214 0.91156 13.632 3 0 Median 0.56211 0.8473 1.9522 2 0 Median 68429000 41570000 26859000 30368000 17964000 12404000 38061000 23606000 14455000 12209 1439 12531 43913;43914;43915;43916;43917 66019;66020;66021;66022;66023;66024;66025;66026;66027 66020 9 TSVTDFLR KAEGYAEGDLTLYHRTSVTDFLRAANPVDF DLTLYHRTSVTDFLRAANPVDFLSKASEIM R T S L R A 0 1 0 1 0 0 0 0 0 0 1 0 0 1 0 1 2 0 0 1 0 0 8 0 937.4869 Q8IY81;B4DKU3 Q8IY81 252 259 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 0.00012181 129.68 5 2 0.74538 1.0332 32.152 7 Median 0.75574 1.0332 37.448 5 0 Median 0.62709 0.9908 6.8614 2 0 Median 235100000 133050000 102050000 167000000 92348000 74651000 68098000 40698000 27400000 12210 1628 12532 43918;43919;43920;43921;43922;43923;43924 66028;66029;66030;66031;66032;66033;66034;66035;66036;66037;66038;66039 66029 12 TSYAQLLEECPRDETSGLHLLPLPESAPALPTEEQVQR SSSSETFPTPDGQGRTSYAQLLEECPRDET PESAPALPTEEQVQRSLQAVPGAKDGTSLW R T S Q R S 3 2 0 1 1 3 6 1 1 0 7 0 0 0 5 3 3 0 1 1 0 0 38 1 4274.1165 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 1093 1130 EPPK1 Epiplakin no no 4 9.7985E-13 79.177 3 0.53149 0.72769 11.894 3 Median 0.53149 0.72769 11.894 3 0 Median NaN NaN NaN 0 0 Median 35982000 20796000 15186000 35982000 20796000 15186000 0 0 0 12211 373;1386 12533 43925;43926;43927 66040;66041;66042;66043;66044;66045;66046;66047;66048 66044 9 TSYEEFTHK FNMCGFECRILPKCRTSYEEFTHKDGVWNL ILPKCRTSYEEFTHKDGVWNLQNEVTKERT R T S H K D 0 0 0 0 0 0 2 0 1 0 0 1 0 1 0 1 2 0 1 0 0 0 9 0 1140.5088 Q6P2Q9 Q6P2Q9 1202 1210 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 2.001E-05 162.25 4 1 0.59625 0.74361 39.522 5 Median 0.5726 0.72827 7.9329 4 0 Median 1.2729 1.7527 NaN 1 0 Median 45813000 26805000 19008000 40794000 24549000 16246000 5018800 2256400 2762400 12212 1592 12534 43928;43929;43930;43931;43932 66049;66050;66051;66052;66053;66054;66055;66056 66049 8 TSYLTELIDR KELLKHKFIVKNSKKTSYLTELIDRFKRWK KNSKKTSYLTELIDRFKRWKAEGHSDDESD K T S D R F 0 1 0 1 0 0 1 0 0 1 2 0 0 0 0 1 2 0 1 0 0 0 10 0 1209.6241 Q9NWX4;Q8NBY1;B4E0Y9;Q9P289;Q499L9;Q96SR7;B4DMR0;H0Y630;B4DR80;Q6P0Y1;Q5U0E6;B4DT57;Q9Y6E0;Q5JV98;Q6FG81;Q5JV99 Q9NWX4 158 167 STK26;MST4;STK24;HEL-S-95 Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit yes no 2 0.022949 52.79 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3611500 0 3611500 0 0 0 3611500 0 3611500 12213 886 12535 43933 66057 66057 1 TSYMAQLMK EHERILDMCCAPGGKTSYMAQLMKNTGVIL CAPGGKTSYMAQLMKNTGVILANDANAERL K T S M K N 1 0 0 0 0 1 0 0 0 0 1 1 2 0 0 1 1 0 1 0 0 0 9 0 1071.5093 P46087 P46087 399 407 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 0.013558 51.059 1 0.39408 0.57203 NaN 1 Median NaN NaN NaN 0 0 Median 0.39408 0.57203 NaN 1 0 Median 6621600 4845900 1775700 0 0 0 6621600 4845900 1775700 12214 1343 12536 43934 66058 66058 584;585 1 TTAACKKDIFKANK EFVTATECVHYFEWRTTAACKKDIFKANKE RTTAACKKDIFKANKEVPCYVFDEELRKHD R T T N K E 3 0 1 1 1 0 0 0 0 1 0 4 0 1 0 0 2 0 0 0 0 0 14 3 1594.8501 Q59EZ3;P11717 Q59EZ3 80 93 IGF2R Cation-independent mannose-6-phosphate receptor yes no 2 0.0026557 87.806 1 72.983 77.823 NaN 1 Median 72.983 77.823 NaN 1 0 Median NaN NaN NaN 0 0 Median 19117000 181780 18935000 19117000 181780 18935000 0 0 0 12215 1257 12537 43935 66059 66059 0 TTAENEFVMLK VEDFKNKYEDEINKRTTAENEFVMLKKDVD INKRTTAENEFVMLKKDVDAAYMNKVELEA R T T L K K 1 0 1 0 0 0 2 0 0 0 1 1 1 1 0 0 2 0 0 1 0 0 11 0 1281.6275 CON__P13647;P13647;B4E1T1;B4DL32;F8W0C6;H0YIN9 CON__P13647 266 276 KRT5 Keratin, type II cytoskeletal 5 no no 2 0.001335 64.654 2 0.17639 0.26377 NaN 1 Median NaN NaN NaN 0 0 Median 0.17639 0.26377 NaN 1 0 Median 23729000 22325000 1404000 0 0 0 23729000 22325000 1404000 + 12216 961 12538 43936;43937 66060;66061 66061 337 2 TTANAIYCPPK LSNLPKARAALTSARTTANAIYCPPKLQAT TSARTTANAIYCPPKLQATLDMQSGIIHAA R T T P K L 2 0 1 0 1 0 0 0 0 1 0 1 0 0 2 0 2 0 1 0 0 0 11 0 1234.6016 O00231;B4DTS5;J3QS13 O00231 195 205 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 2 0.010136 57.59 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12217 1165 12539 43938 66062 66062 1 TTANLAALK DGIPNDSSDSEMEDKTTANLAALKLDEWLH SEMEDKTTANLAALKLDEWLHFTLEPEAAS K T T L K L 3 0 1 0 0 0 0 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 9 0 901.52328 Q6ZMY0;Q9H6S0 Q6ZMY0 1008 1016 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 yes no 1 0.00019907 155 4 0.78798 1.016 6.348 4 Median 0.78798 1.016 6.348 4 0 Median NaN NaN NaN 0 0 Median 151250000 82726000 68528000 151250000 82726000 68528000 0 0 0 12218 1602 12540 43939;43940;43941;43942 66063;66064;66065;66066;66067;66068 66064 4 TTDDTTTDNYIAQGK SSNVNKQEENGVFIKTTDDTTTDNYIAQGK TTDDTTTDNYIAQGKRKSNEMITNLGKKQK K T T G K R 1 0 1 3 0 1 0 1 0 1 0 1 0 0 0 0 5 0 1 0 0 0 15 0 1642.7322 B4DXX1;B2R713;Q7Z2T5 B4DXX1 439 453 TRMT1L TRMT1-like protein yes no 2 3.9954E-14 160.91 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1054000 1054000 0 1054000 1054000 0 0 0 0 12219 702 12541 43943;43944;43945 66069;66070;66071 66070 3 TTDGYLLR VKKWQTMIEAHVDVKTTDGYLLRLFCVGFT EAHVDVKTTDGYLLRLFCVGFTKKRNNQIR K T T L R L 0 1 0 1 0 0 0 1 0 0 2 0 0 0 0 0 2 0 1 0 0 0 8 0 937.4869 Q6NXR8;P61247;A8K4W0;B7Z3M5;H0Y8L7;E9PFI5;D6RG13;D6RAT0;H0Y9Y4;D6RB09;D6RAS7;D6RED7;D6R9B6 Q6NXR8 129 136 RPS3A 40S ribosomal protein S3a yes no 2 0.0014296 114.72 4 2 0.72523 0.99548 14.168 6 Median 0.75139 1.0262 9.0816 4 0 Median 0.51639 0.83429 3.5221 2 0 Median 880390000 517670000 362720000 770140000 445440000 324700000 110250000 72226000 38019000 12220 1393 12542 43946;43947;43948;43949;43950;43951 66072;66073;66074;66075;66076;66077;66078;66079;66080;66081;66082 66081 11 TTDTASVQNEAKLDEILK PTANKKCDLISIPKKTTDTASVQNEAKLDE TASVQNEAKLDEILKEIKSIKDTICNQDER K T T L K E 2 0 1 2 0 1 2 0 0 1 2 2 0 0 0 1 3 0 0 1 0 0 18 1 1975.011 B4DMH3;Q53G58;B3KN06;A0A024RBI5;Q59EA2;Q9ULV4;B7Z9V0;B4E3S0;H0YHL7 B4DMH3 392 409 CORO1C Coronin;Coronin-1C yes no 3 8.8152E-05 89.311 2 1.2765 1.5731 16.632 2 Median 1.2765 1.5731 16.632 2 0 Median NaN NaN NaN 0 0 Median 12235000 4633700 7601500 12235000 4633700 7601500 0 0 0 12221 274 12543 43952;43953 66083;66084 66083 2 TTEEQVQASTPCPR EDGALDDEGHSGIKKTTEEQVQASTPCPRT KTTEEQVQASTPCPRTEMASARIGDEYAED K T T P R T 1 1 0 0 1 2 2 0 0 0 0 0 0 0 2 1 3 0 0 1 0 0 14 0 1602.7308 B2RDN4;Q14137;A8K3R2 B2RDN4 97 110 BOP1 Ribosome biogenesis protein BOP1 yes no 2 5.4356E-27 182.71 4 1 0.86708 1.154 22.553 5 Median 0.87007 1.1746 9.1965 4 0 Median 0.50465 0.71993 NaN 1 0 Median 61488000 34224000 27264000 51688000 28071000 23617000 9800200 6152700 3647500 12222 738 12544 43954;43955;43956;43957;43958 66085;66086;66087;66088;66089;66090;66091;66092 66087 8 TTELIR KEQLPIFKAQNPDAKTTELIRRIAQRWREL FKAQNPDAKTTELIRRIAQRWRELPDSKKK K T T I R R 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 2 0 0 0 0 0 6 0 731.41775 Q6LES8;E5KSX8;E5KSU5;Q00059;H7BYN3;Q05D31;Q3SX57 Q6LES8 77 82 TFAM Transcription factor A, mitochondrial yes no 2 0.026006 85.306 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12223 1002 12545 43959 66093 66093 1 TTEMETIYDLGTK PATGTGSKVGKLTLKTTEMETIYDLGTKMI LKTTEMETIYDLGTKMIESLTKDKVQAGDV K T T T K M 0 0 0 1 0 0 2 1 0 1 1 1 1 0 0 0 4 0 1 0 0 0 13 0 1500.7018 Q9Y230;B3KNL2;M0R0Y3;B4DW30;X6R2L4 Q9Y230 165 177 RUVBL2 RuvB-like 2 yes no 2 8.5774E-05 100.09 3 2 0.88376 1.334 1.9261 2 Median NaN NaN NaN 0 0 Median 0.88376 1.334 1.9261 2 0 Median 40236000 22709000 17527000 3458700 3458700 0 36777000 19250000 17527000 12224 1801 12546 43960;43961;43962;43963;43964 66094;66095;66096;66097;66098;66099 66097 834 6 TTEPGVTGLLLAVEGPAAK SEKLQVGQGVSLTLKTTEPGVTGLLLAVEG GVTGLLLAVEGPAAKRTMRPTQKDSETVDE K T T A K R 3 0 0 0 0 0 2 3 0 0 3 1 0 0 2 0 3 0 0 2 0 0 19 0 1823.004 Q14690;B4DH82 Q14690 982 1000 PDCD11 Protein RRP5 homolog yes no 2 6.3209E-24 156.2 4 2 0.98911 1.2481 3.7872 6 Median 0.99443 1.2481 0.80684 4 0 Median 0.77531 1.2338 8.2218 2 0 Median 263470000 140790000 122670000 134670000 67707000 66962000 128800000 73086000 55711000 12225 1494 12547 43965;43966;43967;43968;43969;43970 66100;66101;66102;66103;66104;66105;66106;66107;66108;66109;66110;66111 66101 12 TTEVTGTGLGR PLASPADGVKSKPRKTTEVTGTGLGRNRKK KPRKTTEVTGTGLGRNRKKLSSYPKQILRR K T T G R N 0 1 0 0 0 0 1 3 0 0 1 0 0 0 0 0 4 0 0 1 0 0 11 0 1090.5619 Q8WYP5 Q8WYP5 2238 2248 AHCTF1 Protein ELYS yes yes 2 1.4876E-12 147.2 4 2 0.69215 0.96809 8.0381 6 Median 0.74441 1.0049 8.7669 4 0 Median 0.61378 0.92399 4.6824 2 0 Median 125860000 71824000 54038000 93246000 51439000 41807000 32616000 20385000 12231000 12226 1670 12548 43971;43972;43973;43974;43975;43976 66112;66113;66114;66115;66116;66117;66118;66119;66120;66121;66122 66117 11 TTFQENTQSISVR SLSIAGVGLDSSNLKTTFQENTQSISVRGI LKTTFQENTQSISVRGIKFIPGPPGNKDLC K T T V R G 0 1 1 0 0 2 1 0 0 1 0 0 0 1 0 2 3 0 0 1 0 0 13 0 1509.7423 A6NHR9;J3KTL8 A6NHR9 1208 1220 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 7.7055E-13 138.99 3 0.79324 1.0842 1.5653 2 Median 0.79324 1.0842 1.5653 2 0 Median NaN NaN NaN 0 0 Median 20327000 12268000 8059300 20327000 12268000 8059300 0 0 0 12227 568 12549 43977;43978;43979 66123;66124;66125;66126;66127 66127 5 TTGEGTSLRGDINVCIVGDPSTAK VKRGVLLMLFGGVPKTTGEGTSLRGDINVC GDINVCIVGDPSTAKSQFLKHVEEFSPRAV K T T A K S 1 1 1 2 1 0 1 4 0 2 1 1 0 0 1 2 4 0 0 2 0 0 24 1 2447.1962 Q4ZG57;Q14566;B4DRF6 Q4ZG57 343 366 MCM6 DNA replication licensing factor MCM6 yes no 3 0.00034059 73.796 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 885960 885960 0 885960 885960 0 0 0 0 12228 1488 12550 43980 66128 66128 1 TTGFGMIYDSLDYAK VIFVFGFRTHFGGGKTTGFGMIYDSLDYAK TTGFGMIYDSLDYAKKNEPKHRLARHGLYE K T T A K K 1 0 0 2 0 0 0 2 0 1 1 1 1 1 0 1 2 0 2 0 0 0 15 0 1680.7705 E7ETK0;A0A087WUS0;P62847 E7ETK0 69 83 RPS24 40S ribosomal protein S24 yes no 2 1.1836E-28 176.78 9 4 0.91039 1.1494 63.108 12 Median 0.92416 1.1667 13.757 8 0 Median 0.22498 0.34408 20.26 4 0 Median 1083400000 753270000 330100000 474440000 246600000 227830000 608930000 506660000 102270000 12229 344 12551;12552 43981;43982;43983;43984;43985;43986;43987;43988;43989;43990;43991;43992;43993 66129;66130;66131;66132;66133;66134;66135;66136;66137;66138;66139;66140;66141;66142;66143;66144;66145;66146;66147;66148;66149;66150;66151;66152 66137 120 24 TTGIVMDSGDGVTHTVPIYEGYALPHAILR YVAIQAVLSLYASGRTTGIVMDSGDGVTHT VPIYEGYALPHAILRLDLAGRDLTDYLMKI R T T L R L 2 1 0 2 0 0 1 4 2 3 2 0 1 0 2 1 4 0 2 3 0 0 30 0 3182.607 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;Q8WVW5;B4DW52;B3KWQ3;Q6PJ43;B7ZAP6;Q562Z7;Q562X9;Q562S0;Q562N0;Q562L5;A0AUL6;Q562Y6;Q562N8;Q562Y8;Q562N2;Q562M5;Q562M3;Q562R8;Q562P0;Q562L9;Q562Z6;P63261;I3L3I0;I3L1U9;I3L4N8 Q53GK6 148 177 PS1TP5BP1;ACTB;ACTG1;ACT Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 3;4 1.062E-80 194.68 19 10 0.77737 1.0682 71.239 23 Median 0.73985 1.0244 10.749 16 0 Median 2.5331 4.2639 18.89 7 0 Median 9040800000 3611200000 5429600000 3949000000 2217600000 1731400000 5091700000 1393600000 3698200000 12230 1388;1420 12553;12554 43994;43995;43996;43997;43998;43999;44000;44001;44002;44003;44004;44005;44006;44007;44008;44009;44010;44011;44012;44013;44014;44015;44016;44017;44018;44019;44020;44021;44022 66153;66154;66155;66156;66157;66158;66159;66160;66161;66162;66163;66164;66165;66166;66167;66168;66169;66170;66171;66172;66173;66174;66175;66176;66177;66178;66179;66180;66181;66182;66183;66184;66185;66186;66187;66188;66189;66190;66191;66192;66193;66194;66195;66196;66197;66198;66199;66200;66201;66202 66185 605 50 TTGLEEAAEAETAK SNDQDGEYCPEVKLKTTGLEEAAEAETAKD KTTGLEEAAEAETAKDNGEAEDQEEKEDAE K T T A K D 4 0 0 0 0 0 4 1 0 0 1 1 0 0 0 0 3 0 0 0 0 0 14 0 1419.6729 A0A024R704;P78362 A0A024R704 327 340 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal yes no 2 0.0084946 54.7 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12231 166 12555 44023 66203 66203 1 TTGNATVDHLSK LLVEKGEYCQTRYVKTTGNATVDHLSKYLA YVKTTGNATVDHLSKYLALRIALERRQQQE K T T S K Y 1 0 1 1 0 0 0 1 1 0 1 1 0 0 0 1 3 0 0 1 0 0 12 0 1242.6204 Q06587;A0A024RCR9;B4DW57 Q06587 286 297 RING1 E3 ubiquitin-protein ligase RING1 yes no 2 0.0039907 53.08 2 0.79397 1.0565 4.2882 2 Median NaN NaN NaN 0 0 Median 0.79397 1.0565 4.2882 2 0 Median 4442700 2466500 1976100 0 0 0 4442700 2466500 1976100 12232 1446 12556 44024;44025 66204;66205;66206 66204 3 TTHFVEGGDAGNR WPFKLSSPRGGMKKKTTHFVEGGDAGNRED KKTTHFVEGGDAGNREDQINRLIRRMN___ K T T N R E 1 1 1 1 0 0 1 3 1 0 0 0 0 1 0 0 2 0 0 1 0 0 13 0 1359.6167 A0A024R814;P18124;A8MUD9;O95036 A0A024R814 235 247 RPL7;WUGSC:H_RG054D04.1 60S ribosomal protein L7 yes no 2;3 0.0001648 117.52 6 2 0.58521 0.81229 18.148 5 Median 0.58521 0.81229 20.332 3 0 Median 0.65633 0.84704 21.379 2 0 Median 17764000 10975000 6789100 12345000 7904000 4440800 5419200 3070900 2348400 12233 189 12557 44026;44027;44028;44029;44030;44031;44032;44033 66207;66208;66209;66210;66211;66212;66213;66214;66215 66212 9 TTHFVEGGDAGNREDQINR WPFKLSSPRGGMKKKTTHFVEGGDAGNRED VEGGDAGNREDQINRLIRRMN_________ K T T N R L 1 2 2 2 0 1 2 3 1 1 0 0 0 1 0 0 2 0 0 1 0 0 19 1 2114.973 A0A024R814;P18124;A8MUD9;O95036 A0A024R814 235 253 RPL7;WUGSC:H_RG054D04.1 60S ribosomal protein L7 yes no 2;3;4 1.7904E-50 201.3 10 2 0.69299 0.97778 8.0143 12 Median 0.70238 0.96153 8.5349 10 0 Median 0.65286 1.0157 0.090489 2 0 Median 2467100000 1447000000 1020100000 2386100000 1399700000 986400000 81050000 47355000 33696000 12234 189 12558 44034;44035;44036;44037;44038;44039;44040;44041;44042;44043;44044;44045 66216;66217;66218;66219;66220;66221;66222;66223;66224;66225;66226;66227;66228;66229;66230;66231;66232;66233;66234;66235;66236;66237 66222 22 TTHYTPLACGSNPLK QWPLLLKNFDKLNVRTTHYTPLACGSNPLK TTHYTPLACGSNPLKREIGDYIRTGFINLD R T T L K R 1 0 1 0 1 0 0 1 1 0 2 1 0 0 2 1 3 0 1 0 0 0 15 0 1658.8086 O60832;C9IYT0;U5UA77;H7C0M1;U5U7S7;H7C2Q9 O60832 66 80 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2;3 3.6705E-21 171.49 6 0.72351 0.82876 11.631 6 Plateau 0.72351 0.82876 11.631 6 0 Plateau NaN NaN NaN 0 0 Median 145650000 87161000 58491000 145650000 87161000 58491000 0 0 0 12235 1193 12559 44046;44047;44048;44049;44050;44051 66238;66239;66240;66241;66242;66243;66244;66245;66246;66247;66248 66241 11 TTHYTPLACGSNPLKR QWPLLLKNFDKLNVRTTHYTPLACGSNPLK THYTPLACGSNPLKREIGDYIRTGFINLDK R T T K R E 1 1 1 0 1 0 0 1 1 0 2 1 0 0 2 1 3 0 1 0 0 0 16 1 1814.9098 O60832;C9IYT0;U5UA77;H7C0M1;U5U7S7;H7C2Q9 O60832 66 81 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 3 2.1788E-36 122.63 3 1 0.79269 1.029 NaN 1 Median 0.79269 1.029 NaN 1 0 Median NaN NaN NaN 0 0 Median 38336000 22365000 15971000 35851000 19880000 15971000 2485500 2485500 0 12236 1193 12560 44052;44053;44054;44055 66249;66250;66251;66252 66251 4 TTIENIQLPHTLLSR LAAANPIESQWNPKKTTIENIQLPHTLLSR TTIENIQLPHTLLSRFDLIFLMLDPQDEAY K T T S R F 0 1 1 0 0 1 1 0 1 2 3 0 0 0 1 1 3 0 0 0 0 0 15 0 1734.9628 B4DLA6;B3KMX0;A0A024R7U6;P33991 B4DLA6 589 603 MCM4 DNA replication licensing factor MCM4 yes no 2;3 3.193E-07 124.3 5 2 0.35257 0.46744 114.46 6 Median 0.33367 0.45118 12.673 4 0 Median 2.7448 3.889 26.657 2 0 Median 64607000 39957000 24650000 46652000 35369000 11283000 17955000 4587900 13367000 12237 185 12561 44056;44057;44058;44059;44060;44061;44062 66253;66254;66255;66256;66257;66258;66259;66260;66261 66255 9 TTILQSTGK VTRDIVSRERVWRTRTTILQSTGKNFSKNI RVWRTRTTILQSTGKNFSKNIFAILQSVKA R T T G K N 0 0 0 0 0 1 0 1 0 1 1 1 0 0 0 1 3 0 0 0 0 0 9 0 947.52876 Q6P1J9;A0A1B0GUB2;B4DV47;A0A0S2Z5M9;A0A0S2Z5N1 Q6P1J9 235 243 CDC73 Parafibromin yes no 2 0.00029953 96.034 3 0.69382 0.86674 NaN 1 Median 0.69382 0.86674 NaN 1 0 Median NaN NaN NaN 0 0 Median 35469000 28384000 7085600 35469000 28384000 7085600 0 0 0 12238 1590 12562 44063;44064;44065 66262;66263;66264 66264 3 TTIPEEEEEEEEAAGVVVEEELFHQQGTPR NSQGEEVAQRSTVFKTTIPEEEEEEEEAAG VVVEEELFHQQGTPRASNRSCAIM______ K T T P R A 2 1 0 0 0 2 11 2 1 1 1 0 0 1 2 0 3 0 0 3 0 0 30 0 3410.5638 P20700;B4DZT3 P20700 548 577 LMNB1 Lamin-B1 yes no 3 3.0963E-47 156.47 4 2 0.74067 1.0197 56.729 6 Median 0.7245 1.0013 2.7822 4 0 Median 1.8205 2.9844 5.9478 2 0 Median 584920000 260120000 324790000 315850000 176300000 139550000 269070000 83823000 185240000 12239 1285 12563 44066;44067;44068;44069;44070;44071 66265;66266;66267;66268;66269;66270;66271;66272;66273;66274 66266 10 TTISVAHLLAAR LAKVYQPKRSVLSPKTTISVAHLLAARQDL SPKTTISVAHLLAARQDLSKILRTSSGSIR K T T A R Q 3 1 0 0 0 0 0 0 1 1 2 0 0 0 0 1 2 0 0 1 0 0 12 0 1251.7299 E9PH82;I6L9E8;Q8NCA5;B3KTW4;B4DT23;B4DY25 E9PH82 261 272 FAM98A Protein FAM98A yes no 2;3 0.00040484 106.88 5 1 0.76435 1.0434 10.938 6 Median 0.76582 1.0535 10.693 5 0 Median 0.64206 0.87877 NaN 1 0 Median 45000000 25053000 19947000 39273000 21486000 17787000 5727300 3566600 2160700 12240 1028 12564 44072;44073;44074;44075;44076;44077 66275;66276;66277;66278;66279;66280;66281;66282;66283;66284;66285 66277 11 TTLTAAITK PHVNVGTIGHVDHGKTTLTAAITKILAEGG HVDHGKTTLTAAITKILAEGGGAKFKKYEE K T T T K I 2 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 4 0 0 0 0 0 9 0 918.5386 P49411;H3BNU3 P49411 71 79 TUFM Elongation factor Tu, mitochondrial yes no 2 0.0053733 72.23 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19915000 19915000 0 19915000 19915000 0 0 0 0 12241 1350 12565 44078 66286 66286 1 TTNFAGILSQGLR FKQLHNRRLLWHGSRTTNFAGILSQGLRIA SRTTNFAGILSQGLRIAPPEAPVTGYMFGK R T T L R I 1 1 1 0 0 1 0 2 0 1 2 0 0 1 0 1 2 0 0 0 0 0 13 0 1376.7412 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 866 878 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 4.4852E-37 179.46 4 2 1.0395 1.4195 40.016 6 Median 1.0558 1.451 2.2003 4 0 Median 0.4044 0.66701 3.8802 2 0 Median 1193400000 661090000 532300000 802960000 386880000 416080000 390430000 274210000 116220000 12242 107 12566 44079;44080;44081;44082;44083;44084 66287;66288;66289;66290;66291;66292;66293;66294;66295;66296;66297;66298;66299 66292 13 TTNIELQGVPNDEVHPLLGVK QSSADGSQPPKKKPKTTNIELQGVPNDEVH QGVPNDEVHPLLGVKGDGKSKKKQAGRPKG K T T V K G 0 0 2 1 0 1 2 2 1 1 3 1 0 0 2 0 2 0 0 3 0 0 21 0 2272.2063 B4DLF8;A0A024R9B5;B4DMM7;Q15291 B4DLF8 327 347 RBBP5 Retinoblastoma-binding protein 5 yes no 3 8.8054E-05 74.744 3 0.77512 0.98577 1.2636 3 Median 0.77512 0.98577 1.2636 3 0 Median NaN NaN NaN 0 0 Median 54638000 31416000 23222000 54638000 31416000 23222000 0 0 0 12243 215 12567 44085;44086;44087 66300;66301;66302;66303;66304;66305;66306;66307 66302 8 TTPDVIFVFGFR VPKTEIREKLAKMYKTTPDVIFVFGFRTHF MYKTTPDVIFVFGFRTHFGGGKTTGFGMIY K T T F R T 0 1 0 1 0 0 0 1 0 1 0 0 0 3 1 0 2 0 0 2 0 0 12 0 1397.7343 E7ETK0;A0A087WUS0;P62847 E7ETK0 50 61 RPS24 40S ribosomal protein S24 yes no 2 4.6094E-10 152.11 10 2 0.88346 1.2218 55.897 11 Median 0.94615 1.304 26.814 9 0 Median 0.22571 0.36065 4.2603 2 0 Median 4588000000 2401600000 2186300000 4498600000 2328200000 2170400000 89357000 73461000 15895000 12244 344 12568 44088;44089;44090;44091;44092;44093;44094;44095;44096;44097;44098;44099 66308;66309;66310;66311;66312;66313;66314;66315;66316;66317;66318;66319;66320;66321;66322;66323;66324;66325;66326;66327;66328;66329;66330;66331;66332 66324 25 TTPLPSLR T T L R 0 1 0 0 0 0 0 0 0 0 2 0 0 0 2 1 2 0 0 0 0 0 8 0 883.51272 REV__Q5W9G0 yes no 2 0.018164 60.358 1 0.81188 1.125 NaN 1 Median 0.81188 1.125 NaN 1 0 Median NaN NaN NaN 0 0 Median 54653000 29321000 25332000 54653000 29321000 25332000 0 0 0 + 12245 1857 12569 44100 66333 66333 1 TTPSGLQIMPLK PSSGGDRATKTVSYRTTPSGLQIMPLKKSQ SYRTTPSGLQIMPLKKSQNGMENGDAGSEK R T T L K K 0 0 0 0 0 1 0 1 0 1 2 1 1 0 2 1 2 0 0 0 0 0 12 0 1284.7112 A0A0B4J291;Q8N8U2 A0A0B4J291 139 150 CDYL2 Chromodomain Y-like protein 2 yes no 2 0.02273 47.853 1 0.83222 1.2648 NaN 1 Median NaN NaN NaN 0 0 Median 0.83222 1.2648 NaN 1 0 Median 12432000 6665300 5766400 0 0 0 12432000 6665300 5766400 12246 417 12570 44101 66334 66334 138 0 TTPSVVAFTADGER EGKQAKVLENAEGARTTPSVVAFTADGERL RTTPSVVAFTADGERLVGMPAKRQAVTNPN R T T E R L 2 1 0 1 0 0 1 1 0 0 0 0 0 1 1 1 3 0 0 2 0 0 14 0 1449.71 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;D6RA73;D6RJI2 B7Z4V2 72 85 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 3.7811E-14 110.66 4 3 0.485 4.4605 126.86 6 Linear 0.4514 0.6085 7.6234 4 0 Median 4.5779 7.1253 1.2844 2 0 Median 119200000 54600000 64602000 69146000 46075000 23071000 50056000 8524300 41531000 12247 910 12571 44102;44103;44104;44105;44106;44107;44108 66335;66336;66337;66338;66339;66340;66341;66342;66343;66344;66345 66342 11 TTPSYVAFTDTER QHGKVEIIANDQGNRTTPSYVAFTDTERLI NRTTPSYVAFTDTERLIGDAAKNQVAMNPT R T T E R L 1 1 0 1 0 0 1 0 0 0 0 0 0 1 1 1 4 0 1 1 0 0 13 0 1486.694 V9HW22;P11142;E9PKE3;Q53GZ6;B3KTV0;Q53HF2;E9PNE6;B4DTX2;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PI65;E9PN25;A8K5I0;A0A0G2JIW1;Q59EJ3;P0DMV9;P0DMV8;B4DI39;B4DWK5;B4DFN9;B4DNV4;B4E1T6;B4DNX1;Q53FC7;B3KSM6;B2R6X5;P17066;P48741;B4DXY3;Q53FA3;B4DI54;P34931;B2RCQ9 V9HW22 37 49 HEL-S-72p;HSPA8;HEL-S-103;HSPA1B;HSPA1A;HSPA6;HSPA7;HSPA1L Heat shock cognate 71 kDa protein;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1-like no no 2 5.3476E-05 123.62 4 2 0.63527 0.87524 53.602 6 Median 0.6306 0.86629 1.4437 4 0 Median 1.4851 2.4472 0.81784 2 0 Median 1146500000 630610000 515850000 783460000 478380000 305080000 363000000 152230000 210770000 12248 1253;439;701;810 12572 44109;44110;44111;44112;44113;44114 66346;66347;66348;66349;66350;66351;66352;66353;66354;66355;66356;66357;66358;66359;66360 66349 15 TTPYQIACGISQGLADNTVIAK VTLPDGKQVDAESWKTTPYQIACGISQGLA CGISQGLADNTVIAKVNNVVWDLDRPLEED K T T A K V 3 0 1 1 1 2 0 2 0 3 1 1 0 0 1 1 3 0 1 1 0 0 22 0 2320.1733 Q5M7Z9;Q53GX7;P26639;B2RDX5;D6R9F8 Q5M7Z9 100 121 TARS Threonine--tRNA ligase, cytoplasmic yes no 2 2.6176E-08 103.66 2 0.30428 0.38753 19.525 2 Median 0.30428 0.38753 19.525 2 0 Median NaN NaN NaN 0 0 Median 8232000 6136800 2095200 8232000 6136800 2095200 0 0 0 12249 1298 12573 44115;44116 66361;66362;66363 66362 3 TTQIINITMTK VFLDSGRKTRSARRRTTQIINITMTKKLDV ARRRTTQIINITMTKKLDVEEPDSANSSFY R T T T K K 0 0 1 0 0 1 0 0 0 3 0 1 1 0 0 0 4 0 0 0 0 0 11 0 1262.6904 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1797 1807 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.00064049 72.434 2 0.30534 0.45626 0.95156 2 Median NaN NaN NaN 0 0 Median 0.30534 0.45626 0.95156 2 0 Median 18310000 13626000 4684200 0 0 0 18310000 13626000 4684200 12250 148;1499 12574 44117;44118 66364;66365 66364 76 2 TTQIPQFLLDDCFK ENKVVLIVGETGSGKTTQIPQFLLDDCFKN KTTQIPQFLLDDCFKNGIPCRIFCTQPRRL K T T F K N 0 0 0 2 1 2 0 0 0 1 2 1 0 2 1 0 2 0 0 0 0 0 14 0 1724.8444 Q6ZMY0;Q9H6S0;D6RA70 Q6ZMY0 133 146 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 yes no 2 0.0015441 99.215 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12251 1602 12575 44119 66366 66366 1 TTQIPQYLYEGGISR NLDNAVLIGETGSGKTTQIPQYLYEGGISR TTQIPQYLYEGGISRQGIIAVTQPRRVAAI K T T S R Q 0 1 0 0 0 2 1 2 0 2 1 0 0 0 1 1 2 0 2 0 0 0 15 0 1724.8733 B4DIS6;Q9H6R0 B4DIS6 163 177 DHX33 Putative ATP-dependent RNA helicase DHX33 yes no 2 1.2723E-05 101.72 5 2 1.1103 1.5381 15.142 5 Median 0.92989 1.2913 15.41 3 0 Median 1.1679 1.6422 9.2656 2 0 Median 40751000 20966000 19785000 20195000 10618000 9576600 20557000 10348000 10209000 12252 811 12576 44120;44121;44122;44123;44124;44125;44126 66367;66368;66369;66370;66371;66372;66373;66374;66375 66371 9 TTQPSINESESDPFEVVRDDFK DELRMMIAKEENLQRTTQPSINESESDPFE ESESDPFEVVRDDFKSGVHKLHSLIGLGIK R T T F K S 0 1 1 3 0 1 3 0 0 1 0 1 0 2 2 3 2 0 0 2 0 0 22 1 2539.1714 F5H101;A0A024R250;Q76FK4;F8WE42;B4DM91;Q6AI50;A6H8Z4;F5GWN9 F5H101 321 342 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 3 6.7111E-10 118.96 4 2 0.64844 0.85639 13.406 5 Median 0.76818 1.0408 12.93 3 0 Median 0.49975 0.83039 4.3603 2 0 Median 89973000 55081000 34892000 49802000 28989000 20813000 40172000 26093000 14079000 12253 80 12577 44127;44128;44129;44130;44131;44132 66376;66377;66378;66379;66380;66381;66382;66383;66384;66385;66386 66378 11 TTQVPQFILDDFIQNDR QNSVVIIRGATGCGKTTQVPQFILDDFIQN QVPQFILDDFIQNDRAAECNIVVTQPRRIS K T T D R A 0 1 1 3 0 3 0 0 0 2 1 0 0 2 1 0 2 0 0 1 0 0 17 0 2049.0167 Q08211;Q58F26;Q6PJK6 Q08211 418 434 DHX9 ATP-dependent RNA helicase A yes no 2 1.2023E-18 122.12 4 2 0.66728 0.93687 16.125 6 Median 0.67658 0.93687 2.2873 4 0 Median 0.51043 0.81764 32.255 2 0 Median 479880000 291110000 188780000 394890000 233510000 161370000 84996000 57595000 27401000 12254 1448 12578 44133;44134;44135;44136;44137;44138 66387;66388;66389;66390;66391;66392;66393;66394;66395;66396 66391 10 TTQVTQFILDNYIER NHQVTVISGETGCGKTTQVTQFILDNYIER TTQVTQFILDNYIERGKGSACRIVCTQPRR K T T E R G 0 1 1 1 0 2 1 0 0 2 1 0 0 1 0 0 3 0 1 1 0 0 15 0 1839.9367 E7EWK3;B7Z8P5;Q9H2U1 E7EWK3 151 165 DHX36 ATP-dependent RNA helicase DHX36 yes no 2 0.0021317 98.337 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12255 919 12579 44139 66397 66397 1 TTSCQHLVQYLATIAGISGNK QDQSIILLGSSGSGKTTSCQHLVQYLATIA LVQYLATIAGISGNKVFSVEKWQALYTLLE K T T N K V 2 0 1 0 1 2 0 2 1 2 2 1 0 0 0 2 3 0 1 1 0 0 21 0 2261.1474 A0A0D9SFK2;A0A024QZ63;Q92614;B4DYM1;B4E0T8 A0A0D9SFK2 505 525 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 3 0.018136 48.706 1 0.47052 0.59712 NaN 1 Median 0.47052 0.59712 NaN 1 0 Median NaN NaN NaN 0 0 Median 2701400 1985300 716040 2701400 1985300 716040 0 0 0 12256 6 12580 44140 66398 66398 0 TTSSAIYMNLASHIQPGTVNR PKPGLQSSSSVPCQRTTSSAIYMNLASHIQ YMNLASHIQPGTVNRVSSPLPSPSAMTDAA R T T N R V 2 1 2 0 0 1 0 1 1 2 1 0 1 0 1 3 3 0 1 1 0 0 21 0 2260.127 A0A0U1RRM1;Q8WXI9;A0A0U1RR30 A0A0U1RRM1 295 315 GATAD2B Transcriptional repressor p66-beta yes no 3 5.6169E-05 42.908 2 1.0963 1.5463 0.53407 2 Median NaN NaN NaN 0 0 Median 1.0963 1.5463 0.53407 2 0 Median 18321000 9169900 9150700 0 0 0 18321000 9169900 9150700 12257 488 12581 44141;44142 66399;66400 66399 173 2 TTTAAAVASTGPSSR PASRSGSKSTQTVAKTTTAAAVASTGPSSR TTTAAAVASTGPSSRSPSTLLPKKPTAIKT K T T S R S 4 1 0 0 0 0 0 1 0 0 0 0 0 0 1 3 4 0 0 1 0 0 15 0 1376.6896 E7EVA0;P27816;A0A024R2V0;H0Y2V1;F8W9U4;Q86Y04;H7C4C5;B5MEG9 E7EVA0 1955 1969 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 2.5748E-06 120.57 2 2 1.9856 2.5937 60.053 3 Median 0.71597 1.0103 NaN 1 0 Median 2.1869 2.8279 12.223 2 0 Median 14543000 4478700 10064000 6687500 1878500 4809000 7855100 2600300 5254800 12258 1017 12582 44143;44144;44145;44146 66401;66402;66403;66404;66405 66401 5 TTTGPPHLVPPQPLPR EKSNSQVPQQSHFTKTTTGPPHLVPPQPLP TTGPPHLVPPQPLPRRGTQPVGSLELKSAC K T T P R R 0 1 0 0 0 1 0 1 1 0 2 0 0 0 6 0 3 0 0 1 0 0 16 0 1706.9468 A0A024R0F1;Q9UNY4 A0A024R0F1 482 497 TTF2 Transcription termination factor 2 yes no 3 0.00025144 58.885 3 2 0.84462 1.1868 10.043 5 Median 0.77767 1.0685 6.3888 3 0 Median 0.89237 1.2916 4.6616 2 0 Median 57683000 31923000 25760000 31063000 17610000 13453000 26619000 14313000 12306000 12259 33 12583 44147;44148;44149;44150;44151 66406;66407;66408;66409;66410;66411;66412;66413 66413 8 TTTLSGTAPAAGVVPSR DLSRPKSTSTSSMKKTTTLSGTAPAAGVVP TLSGTAPAAGVVPSRVKATPMPSRPSTTPF K T T S R V 3 1 0 0 0 0 0 2 0 0 1 0 0 0 2 2 4 0 0 2 0 0 17 0 1584.8471 E7EVA0;P27816;A0A024R2V0;H0Y2V1;F8W9U4;Q86Y04;B4DSQ1;H7C4C5;B5MEG9 E7EVA0 2017 2033 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 2.7346E-05 81.239 3 1.2751 1.6988 20.57 3 Plateau 1.2751 1.6988 20.57 3 0 Plateau NaN NaN NaN 0 0 Median 13744000 6670900 7072600 13744000 6670900 7072600 0 0 0 12260 1017 12584 44152;44153;44154 66414;66415;66416 66416 3 TTTVNIGSISTADGSALVK KENCRPDGRELGEFRTTTVNIGSISTADGS NIGSISTADGSALVKLGNTTVICGVKAEFA R T T V K L 2 0 1 1 0 0 0 2 0 2 1 1 0 0 0 3 4 0 0 2 0 0 19 0 1833.9684 Q96B26;Q5JXM0 Q96B26 34 52 EXOSC8;DKFZp564C0482 Exosome complex component RRP43 yes no 2 2.5541E-40 187.97 4 1 0.68236 0.86455 10.378 5 Median 0.68851 0.87986 4.7062 4 0 Median 0.46363 0.70004 NaN 1 0 Median 58148000 34949000 23199000 36245000 21246000 14999000 21903000 13703000 8200400 12261 1682 12585 44155;44156;44157;44158;44159 66417;66418;66419;66420;66421;66422;66423;66424;66425;66426;66427 66420 10 TTVEYLIK MVVALKELSIRGDFRTTVEYLIKLLETESF SIRGDFRTTVEYLIKLLETESFQMNRIDTG R T T I K L 0 0 0 0 0 0 1 0 0 1 1 1 0 0 0 0 2 0 1 1 0 0 8 0 965.54335 A0A024R0Y2;B2ZZ90;Q13085;A2NX49 A0A024R0Y2 511 518 hCG_30204;ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 3 0.051841 41.029 1 0.51548 0.65093 NaN 1 Median 0.51548 0.65093 NaN 1 0 Median NaN NaN NaN 0 0 Median 10212000 7462900 2749500 10212000 7462900 2749500 0 0 0 12262 43 12586 44160 66428 66428 1 TTVPQLLASVQR EEQRRGLLEDVQEGRTTVPQLLASVQRWVQ EGRTTVPQLLASVQRWVQETKLLAQARVMV R T T Q R W 1 1 0 0 0 2 0 0 0 0 2 0 0 0 1 1 2 0 0 2 0 0 12 0 1311.751 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 1170 1181 EPPK1 Epiplakin no no 2 0.045537 32.008 1 0.58796 0.79057 NaN 1 Median 0.58796 0.79057 NaN 1 0 Median NaN NaN NaN 0 0 Median 5780900 3641300 2139700 5780900 3641300 2139700 0 0 0 12263 373;1386 12587 44161 66429 66429 1 TTYLVLDEADR RLIDFLECGKTNLRRTTYLVLDEADRMLDM NLRRTTYLVLDEADRMLDMGFEPQIRKIVD R T T D R M 1 1 0 2 0 0 1 0 0 0 2 0 0 0 0 0 2 0 1 1 0 0 11 0 1294.6405 B4DN41;J3KTA4;B5BUE6;P17844;B4DNG2;Q7Z2V5;Q59E92;J3KRZ1;J3QSF1 B4DN41 231 241 DDX5;DKFZp686J01190 Probable ATP-dependent RNA helicase DDX5 yes no 2 1.5385E-05 117.7 4 2 0.42245 0.56435 85.336 5 Median 0.40013 0.54522 7.2345 3 0 Median 1.7762 2.5163 9.6745 2 0 Median 85421000 55916000 29504000 63513000 48660000 14853000 21908000 7256500 14651000 12264 833 12588 44162;44163;44164;44165;44166;44167 66430;66431;66432;66433;66434;66435;66436;66437 66434 8 TVAGGAWTYNTTSAVTVK KRRAVGIWHCGSCMKTVAGGAWTYNTTSAV GGAWTYNTTSAVTVKSAIRRLKELKDQ___ K T V V K S 3 0 1 0 0 0 0 2 0 0 0 1 0 0 0 1 5 1 1 3 0 0 18 0 1825.921 C9J4Z3;P61513 C9J4Z3 39 56 RPL37A 60S ribosomal protein L37a yes no 2 0.018602 43.316 2 0.29012 0.4609 5.6372 2 Median NaN NaN NaN 0 0 Median 0.29012 0.4609 5.6372 2 0 Median 160770000 127990000 32786000 0 0 0 160770000 127990000 32786000 12265 935 12589 44168;44169 66438;66439;66440 66440 3 TVAGQDAVIVLLGTR HVVVGDVLQAADVDKTVAGQDAVIVLLGTR TVAGQDAVIVLLGTRNDLSPTTVMSEGARN K T V T R N 2 1 0 1 0 1 0 2 0 1 2 0 0 0 0 0 2 0 0 3 0 0 15 0 1511.8671 V9HWI1;P30043;M0QZL1;M0R192 V9HWI1 64 78 HEL-S-10;BLVRB Flavin reductase (NADPH) yes no 2 2.1549E-10 129.34 4 2 0.19278 0.25729 106.94 4 Median 0.18159 0.24322 14.339 3 0 Median 1.4468 1.9983 NaN 1 0 Median 68012000 55157000 12855000 54352000 47272000 7079300 13661000 7884800 5776000 12266 1305 12590 44170;44171;44172;44173;44174;44175 66441;66442;66443;66444;66445;66446;66447;66448;66449;66450;66451 66445 11 TVALWDLR NPYSEFILATGSADKTVALWDLRNLKLKLH ATGSADKTVALWDLRNLKLKLHTFESHKDE K T V L R N 1 1 0 1 0 0 0 0 0 0 2 0 0 0 0 0 1 1 0 1 0 0 8 0 972.53927 Q09028;H0YF10;B4DRT0;H0YCT5;H0YDK2;H0YEU5;Q6FHQ0;Q16576;E9PC52;A8K6A2;Q5JP02 Q6FHQ0 296 303 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 no no 2 0.050909 42.109 2 1.0281 1.5553 0.84359 2 Median NaN NaN NaN 0 0 Median 1.0281 1.5553 0.84359 2 0 Median 33930000 17350000 16580000 0 0 0 33930000 17350000 16580000 12267 1521;1452 12591 44176;44177 66452;66453;66454;66455 66452 4 TVAQSQQLETNSQR DAGNSDRVVIQEMLKTVAQSQQLETNSQRD KTVAQSQQLETNSQRDFKVVLLTEVDKLTK K T V Q R D 1 1 1 0 0 4 1 0 0 0 1 0 0 0 0 2 2 0 0 1 0 0 14 0 1588.7805 B4DKE6;Q53HK8;A0A024RDQ8;P40938;Q5U0C2 B4DKE6 114 127 RFC3 Replication factor C subunit 3 yes no 2 1.3553E-49 222.25 4 2 0.51985 0.72204 34.336 6 Median 0.48884 0.67205 21.395 4 0 Median 0.85305 1.1131 4.1159 2 0 Median 21367000 13075000 8292500 16528000 10278000 6249400 4839800 2796600 2043200 12268 321 12592 44178;44179;44180;44181;44182;44183 66456;66457;66458;66459;66460;66461;66462;66463;66464;66465;66466;66467 66459 12 TVAVIGGISR IEEETIKFGKPLGIRTVAVIGGISREDQGF PLGIRTVAVIGGISREDQGFRLRMGCEIVI R T V S R E 1 1 0 0 0 0 0 2 0 2 0 0 0 0 0 1 1 0 0 2 0 0 10 0 971.57638 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56 B3KY11 479 488 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.013183 51.268 2 0.98711 1.2902 7.6152 2 Median NaN NaN NaN 0 0 Median 0.98711 1.2902 7.6152 2 0 Median 9829800 5221300 4608600 0 0 0 9829800 5221300 4608600 12269 45 12593 44184;44185 66468;66469;66470 66469 3 TVDFTQDSNYLLTGGQDK SGDELMTLAHKHIVKTVDFTQDSNYLLTGG FTQDSNYLLTGGQDKLLRIYDLNKPEAEPK K T V D K L 0 0 1 3 0 2 0 2 0 0 2 1 0 1 0 1 3 0 1 1 0 0 18 0 2000.9327 Q9Y3F4;B0AZV0 Q9Y3F4 105 122 STRAP Serine-threonine kinase receptor-associated protein yes no 2 4.6411E-17 99.011 4 1 0.44517 0.5656 24.999 3 Median 0.44517 0.5656 24.999 3 0 Median NaN NaN NaN 0 0 Median 32123000 20088000 12035000 28745000 20088000 8657000 3377900 0 3377900 12270 1818 12594 44186;44187;44188;44189;44190 66471;66472;66473;66474;66475;66476;66477;66478 66476 8 TVDSQGPTPVCTPTFLER KKKKKVSGTLDTPEKTVDSQGPTPVCTPTF SQGPTPVCTPTFLERRKSQVAELNDDDKDD K T V E R R 0 1 0 1 1 1 1 1 0 0 1 0 0 1 3 1 4 0 0 2 0 0 18 0 2003.9622 Q9BYG3;C9J808;H7BZL0 Q9BYG3 227 244 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2 1.5555E-83 238.03 4 1 0.90921 1.2423 25.652 5 Median 0.93743 1.2703 5.5995 4 0 Median 0.47108 0.73005 NaN 1 0 Median 158680000 83434000 75246000 131060000 65722000 65333000 27625000 17712000 9913100 12271 1726 12595 44191;44192;44193;44194;44195 66479;66480;66481;66482;66483;66484;66485;66486;66487 66482 9 TVEELLETGLIQVATK EQMEKCIQEKDEKLKTVEELLETGLIQVAT VEELLETGLIQVATKEEELNAIRTENSSLT K T V T K E 1 0 0 0 0 1 3 1 0 1 3 1 0 0 0 0 3 0 0 2 0 0 16 0 1742.9666 A0A024R663;Q86UP2;G3V4Y7;H0YJZ8 A0A024R663 746 761 KTN1 Kinectin yes no 2 0.040659 57.175 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12272 155 12596 44196 66488 66488 1 TVEFQHIIPISAVTGEGIEELK KDFLHLFEKNMIPERTVEFQHIIPISAVTG IPISAVTGEGIEELKNCIRKSLDEQANQEN R T V L K N 1 0 0 0 0 1 4 2 1 4 1 1 0 1 1 1 2 0 0 2 0 0 22 0 2409.2791 A4D1E9 A4D1E9 315 336 GTPBP10 GTP-binding protein 10 yes yes 3 0.03301 13.475 1 0.57082 0.72518 NaN 1 Median 0.57082 0.72518 NaN 1 0 Median NaN NaN NaN 0 0 Median 2813100 1765400 1047700 2813100 1765400 1047700 0 0 0 12273 548 12597 44197 66489 66489 1 TVEICPFSFDSR PHYGVPFKPQIPEARTVEICPFSFDSRDKE EARTVEICPFSFDSRDKERQLQKEKKIKEL R T V S R D 0 1 0 1 1 0 1 0 0 1 0 0 0 2 1 2 1 0 0 1 0 0 12 0 1456.6657 Q643R0;Q9ULW0;B3KM90 Q643R0 532 543 HCTP4;TPX2 Targeting protein for Xklp2 yes no 2 5.289E-05 122.69 4 2 0.73498 0.99483 28.299 6 Median 0.76048 1.023 3.3922 4 0 Median 0.42322 0.59997 14.471 2 0 Median 93081000 53940000 39141000 72741000 39607000 33135000 20340000 14334000 6005800 12274 1581 12598 44198;44199;44200;44201;44202;44203 66490;66491;66492;66493;66494;66495;66496 66494 7 TVELPLNK LATVKKQLSRVKSKKTVELPLNKEEIERIH SRVKSKKTVELPLNKEEIERIHREVAFNKT K T V N K E 0 0 1 0 0 0 1 0 0 0 2 1 0 0 1 0 1 0 0 1 0 0 8 0 912.52803 Q9BVJ6;B4E343;O60531 Q9BVJ6 115 122 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 0.026323 54.205 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5577300 0 5577300 5577300 0 5577300 0 0 0 12275 1719 12599 44204 66497 66497 1 TVELPLNKEEIER LATVKKQLSRVKSKKTVELPLNKEEIERIH KKTVELPLNKEEIERIHREVAFNKTAQVLS K T V E R I 0 1 1 0 0 0 4 0 0 1 2 1 0 0 1 0 1 0 0 1 0 0 13 1 1568.841 Q9BVJ6;B4E343;O60531 Q9BVJ6 115 127 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 3 8.4915E-05 58.487 1 0.97179 1.2807 NaN 1 Median 0.97179 1.2807 NaN 1 0 Median NaN NaN NaN 0 0 Median 17992000 9608200 8384300 17992000 9608200 8384300 0 0 0 12276 1719 12600 44205 66498 66498 1 TVESEAASYLDQISR NFGVSIQEETVAELRTVESEAASYLDQISR TVESEAASYLDQISRYYITRAKLVSKIAKY R T V S R Y 2 1 0 1 0 1 2 0 0 1 1 0 0 0 0 3 1 0 1 1 0 0 15 0 1667.8002 J7FRP4;A0A087WTV2;B3KQ25;K7ESG5;V9HWJ8;Q6FHK7;A0A024R203;P61289;K7ENH2;K9J957 J7FRP4 83 97 PSME3;HEL-S-283 Proteasome activator complex subunit 3 yes no 2 8.0344E-09 139.78 3 1 0.39057 0.54378 NaN 1 Median 0.39057 0.54378 NaN 1 0 Median NaN NaN NaN 0 0 Median 10023000 6071000 3952100 6938400 6071000 867370 3084800 0 3084800 12277 75 12601 44206;44207;44208;44209 66499;66500;66501;66502 66499 4 TVETVEGGGLVVILLR VLQDFEALTPNLLARTVETVEGGGLVVILL VETVEGGGLVVILLRTMNSLKQLYTVTMDV R T V L R T 0 1 0 0 0 0 2 3 0 1 3 0 0 0 0 0 2 0 0 4 0 0 16 0 1653.9665 Q05CW7;E9PMU0;Q9H0A0 Q9H0A0 137 152 NAT10 N-acetyltransferase 10 no no 2 2.8553E-71 234.39 5 0.76256 1.0114 7.5316 5 Median 0.76256 1.0114 7.5316 5 0 Median NaN NaN NaN 0 0 Median 69601000 38995000 30607000 69601000 38995000 30607000 0 0 0 12278 1730;1443 12602 44210;44211;44212;44213;44214 66503;66504;66505;66506;66507;66508;66509;66510;66511;66512 66503 10 TVEVAEGEAVR KNRKKLSEKPKPNGRTVEVAEGEAVRTPQS PNGRTVEVAEGEAVRTPQSVTAKQPPEIDK R T V V R T 2 1 0 0 0 0 3 1 0 0 0 0 0 0 0 0 1 0 0 3 0 0 11 0 1158.5881 E5RJU9;A0A024R9D2;Q86UE4;H0YB56 E5RJU9 109 119 MTDH Protein LYRIC yes no 2 0.0046873 65.535 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4757000 4757000 0 0 0 0 4757000 4757000 0 12279 218 12603 44215 66513 66513 1 TVFAEHISDECK IVGYVETPRGLRTFKTVFAEHISDECKRRF TFKTVFAEHISDECKRRFYKNWHKSKKKAF K T V C K R 1 0 0 1 1 0 2 0 1 1 0 1 0 1 0 1 1 0 0 1 0 0 12 0 1434.6449 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;B3KS36;H7C422;H7C3M2;B5MCW2;B4DN06;F8WCR1 P39023 104 115 RPL3;rpl3 60S ribosomal protein L3 yes no 2;3 8.0973E-41 199.68 11 3 0.7382 0.98946 8.7583 11 Linear 0.72984 0.96424 3.6861 8 0 Median 0.54105 0.83969 5.2742 3 0 Plateau 1896200000 1089800000 806320000 1832200000 1049100000 783180000 63937000 40794000 23143000 12280 1330 12604 44216;44217;44218;44219;44220;44221;44222;44223;44224;44225;44226;44227;44228;44229 66514;66515;66516;66517;66518;66519;66520;66521;66522;66523;66524;66525;66526;66527;66528;66529;66530;66531;66532;66533;66534;66535;66536;66537;66538;66539 66521 26 TVFAEHISDECKR IVGYVETPRGLRTFKTVFAEHISDECKRRF FKTVFAEHISDECKRRFYKNWHKSKKKAFT K T V K R R 1 1 0 1 1 0 2 0 1 1 0 1 0 1 0 1 1 0 0 1 0 0 13 1 1590.746 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;B3KS36;H7C422;H7C3M2;B5MCW2;B4DN06;F8WCR1 P39023 104 116 RPL3;rpl3 60S ribosomal protein L3 yes no 2;3;4 1.0772E-58 227.36 8 1 0.69881 0.90643 12.096 5 Median 0.69921 0.91715 5.0498 4 0 Median 0.48037 0.70642 NaN 1 0 Median 130840000 82325000 48518000 127110000 80052000 47056000 3734200 2272600 1461600 12281 1330 12605 44230;44231;44232;44233;44234;44235;44236;44237;44238 66540;66541;66542;66543;66544;66545;66546;66547;66548;66549;66550;66551 66543 12 TVFAQFGAVLEVNIPR IIRNLSFKCSEDDLKTVFAQFGAVLEVNIP VFAQFGAVLEVNIPRKPDGKMRGFGFVQFK K T V P R K 2 1 1 0 0 1 1 1 0 1 1 0 0 2 1 0 1 0 0 3 0 0 16 0 1759.9621 A0A024R753;Q9NW13;B4DJ90;C9JAA9;C9JE21 A0A024R753 132 147 RBM28 RNA-binding protein 28 yes no 2 9.8924E-10 104.81 3 0.96324 1.3426 17.188 3 Median 0.96324 1.3426 17.188 3 0 Median NaN NaN NaN 0 0 Median 20315000 8071900 12243000 20315000 8071900 12243000 0 0 0 12282 169 12606 44239;44240;44241 66552;66553;66554;66555 66554 3 TVFHEEFIHYLK LVVALSRTYRTMDDKTVFHEEFIHYLKYVM DDKTVFHEEFIHYLKYVMVVYKREPAVERV K T V L K Y 0 0 0 0 0 0 2 0 2 1 1 1 0 2 0 0 1 0 1 1 0 0 12 0 1561.7929 Q9BPX3;Q6NUR1;D6RA93 Q9BPX3 42 53 NCAPG Condensin complex subunit 3 yes no 3 8.9468E-07 139.31 4 2 0.5686 0.79378 19.251 6 Median 0.70398 0.86867 23.639 4 0 Median 0.46738 0.71746 3.8782 2 0 Median 199530000 118860000 80676000 150780000 86237000 64541000 48754000 32619000 16135000 12283 1706 12607 44242;44243;44244;44245;44246;44247 66556;66557;66558;66559;66560;66561;66562;66563;66564;66565;66566;66567;66568 66558 13 TVFRPPLDIYDVLIR LEKQLMDPRGPGDIRTVFRPPLDIYDVLIR TVFRPPLDIYDVLIRLSPRHIPRHRQAVDS R T V I R L 0 2 0 2 0 0 0 0 0 2 2 0 0 1 2 0 1 0 1 2 0 0 15 1 1816.0247 Q9H6R4;B4DF80;B3KPN5;A0A0C4DFX0 Q9H6R4 999 1013 NOL6 Nucleolar protein 6 yes no 3 2.4311E-15 91.969 4 2 0.9469 1.3601 9.87 6 Median 0.93254 1.2777 7.7132 4 0 Median 0.9469 1.4706 6.5933 2 0 Median 245970000 124740000 121230000 165240000 83539000 81705000 80726000 41200000 39525000 12284 1738 12608 44248;44249;44250;44251;44252;44253 66569;66570;66571;66572;66573;66574;66575;66576;66577;66578;66579;66580;66581;66582;66583 66579 15 TVFSPTLPAAR KSLTSWTNDQGARRKTVFSPTLPAARSSLG ARRKTVFSPTLPAARSSLGSLQTPEAVTTR K T V A R S 2 1 0 0 0 0 0 0 0 0 1 0 0 1 2 1 2 0 0 1 0 0 11 0 1158.6397 Q7Z2W4;A8K9U6;C9J6P4;Q05DV5 Q7Z2W4 375 385 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 0.045917 42.395 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2076700 0 2076700 0 0 0 2076700 0 2076700 12285 1613 12609 44254 66584 66584 1 TVFVGNLPVTCNK KIQINQEEERLKNERTVFVGNLPVTCNKKK ERTVFVGNLPVTCNKKKLKSFFKEYGQIES R T V N K K 0 0 2 0 1 0 0 1 0 0 1 1 0 1 1 0 2 0 0 3 0 0 13 0 1447.7493 P42696;A2A2V2 P42696 186 198 RBM34 RNA-binding protein 34 yes no 2 1.625E-10 114.86 4 0.96468 1.2033 17.31 3 Median 0.96468 1.2033 17.31 3 0 Median NaN NaN NaN 0 0 Median 37678000 16291000 21388000 37678000 16291000 21388000 0 0 0 12286 1339 12610 44255;44256;44257;44258 66585;66586;66587;66588;66589;66590;66591 66591 7 TVGALQVLGTEAQSSLLK LLAALECYNTFIGERTVGALQVLGTEAQSS ALQVLGTEAQSSLLKAVAFFLESIAMHDII R T V L K A 2 0 0 0 0 2 1 2 0 0 4 1 0 0 0 2 2 0 0 2 0 0 18 0 1814.0149 P78527 P78527 1275 1292 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 4.0896E-54 194.59 4 1 0.46838 0.56879 21.813 5 Median 0.48764 0.59816 5.9539 4 0 Linear 0.59465 0.8991 NaN 1 0 Median 88692000 60533000 28158000 73317000 51585000 21732000 15375000 8948800 6426200 12287 1427 12611 44259;44260;44261;44262;44263 66592;66593;66594;66595;66596;66597;66598;66599;66600 66597 9 TVGVEPAADGK KARNSFRYNGLIHRKTVGVEPAADGKGVVV IHRKTVGVEPAADGKGVVVVIKRRSGQRKP K T V G K G 2 0 0 1 0 0 1 2 0 0 0 1 0 0 1 0 1 0 0 2 0 0 11 0 1042.5295 P46779;H0YKD8;H0YMF4;Q59F34;H0YLP6 P46779 48 58 RPL28 60S ribosomal protein L28 yes no 2 1.6348E-06 123.86 5 1 0.73515 0.95837 3.4637 4 Median 0.74506 0.95686 0.33224 3 0 Median 0.6662 1.0252 NaN 1 0 Median 436360000 251430000 184930000 414060000 237930000 176130000 22299000 13504000 8795100 12288 1346 12612 44264;44265;44266;44267;44268;44269 66601;66602;66603;66604;66605;66606;66607;66608;66609;66610 66606 10 TVIESSPESPVTITEPYR ASGSNNAVIYVHNLKTVIESSPESPVTITE ESSPESPVTITEPYRTLSGHTAKITSVAWS K T V Y R T 0 1 0 0 0 0 3 0 0 2 0 0 0 0 3 3 3 0 1 2 0 0 18 0 2004.0052 B7ZLC9;Q8TEQ6;Q58EZ8 B7ZLC9 615 632 GEMIN5 Gem-associated protein 5 yes no 2 0.00084903 49.627 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1083600 1083600 0 1083600 1083600 0 0 0 0 12289 924 12613 44270 66611 66611 1 TVIIDHGSGFLK ______________________________ AARTVIIDHGSGFLKAGTAGWNEPQMVFPN R T V L K A 0 0 0 1 0 0 0 2 1 2 1 1 0 1 0 1 1 0 0 1 0 0 12 0 1285.703 Q9H568 Q9H568 5 16 ACTL8 Actin-like protein 8 yes yes 2 0.014132 48.981 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2047900 2047900 0 2047900 2047900 0 0 0 0 12290 1735 12614 44271 66612 66612 1 TVINFTMPNTIK ATDVAARGLDIEGVKTVINFTMPNTIKHYV GVKTVINFTMPNTIKHYVHRVGRTARAGRA K T V I K H 0 0 2 0 0 0 0 0 0 2 0 1 1 1 1 0 3 0 0 1 0 0 12 0 1377.7326 B7Z6D5;B3GQE6;Q96GQ7 B7Z6D5 503 514 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 0.0028095 51.092 1 0.42489 0.62661 NaN 1 Median NaN NaN NaN 0 0 Median 0.42489 0.62661 NaN 1 0 Median 7216100 5259600 1956500 0 0 0 7216100 5259600 1956500 12291 750 12615 44272 66613 66613 262 1 TVITPDPNLSIDQVGVPR VRGNLMGKRVDFSARTVITPDPNLSIDQVG TPDPNLSIDQVGVPRSIAANMTFAEIVTPF R T V P R S 0 1 1 2 0 1 0 1 0 2 1 0 0 0 3 1 2 0 0 3 0 0 18 0 1920.0316 P24928;A0A087WWE2 P24928 365 382 POLR2A DNA-directed RNA polymerase II subunit RPB1;DNA-directed RNA polymerase yes no 2 0.0001691 93.228 3 0.96422 1.3454 27.812 2 Median 0.96422 1.3454 27.812 2 0 Median NaN NaN NaN 0 0 Median 7629600 4526100 3103500 7629600 4526100 3103500 0 0 0 12292 1295 12616 44273;44274;44275 66614;66615;66616 66614 2 TVIVAALDGTFQR PDIVEFCEAMANAGKTVIVAALDGTFQRKP GKTVIVAALDGTFQRKPFGAILNLVPLAES K T V Q R K 2 1 0 1 0 1 0 1 0 1 1 0 0 1 0 0 2 0 0 2 0 0 13 0 1389.7616 B5BUF9;B5BU32;A0A024R8N6;P04183;K7ERV3;K7ES52;K7ERJ1 B5BUF9 118 130 TK1 Thymidine kinase;Thymidine kinase, cytosolic yes no 2 2.604E-08 103.22 4 0.22434 0.30424 9.5445 4 Median 0.22434 0.30424 9.5445 4 0 Median NaN NaN NaN 0 0 Median 31451000 25314000 6137400 31451000 25314000 6137400 0 0 0 12293 200 12617 44276;44277;44278;44279 66617;66618;66619;66620;66621 66621 4 TVLAAAYGEK LWILLILLFEQYVTKTVLAAAYGEKDAILE QYVTKTVLAAAYGEKDAILEADTEFWFSVC K T V E K D 3 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 10 0 1021.5444 B2RWN5;Q9H583;Q5T3Q7;B3KWS1;B4E263;Q8N7L7 B2RWN5 1427 1436 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.0045733 70.399 3 2 0.81998 0.98897 9.7313 5 Median 0.86838 1.0732 8.4919 3 0 Median 0.62375 0.93768 3.011 2 0 Median 91262000 48622000 42640000 69503000 35493000 34010000 21759000 13129000 8629900 12294 748 12618 44280;44281;44282;44283;44284 66622;66623;66624;66625;66626;66627;66628;66629 66623 8 TVLCGTCGQPADK CSSSGDPAEYNLRSRTVLCGTCGQPADKAS SRTVLCGTCGQPADKASASGSGAQVGGPIS R T V D K A 1 0 0 1 2 1 0 2 0 0 1 1 0 0 1 0 2 0 0 1 0 0 13 0 1405.633 P02545;A0A0C4DGC5 P02545 585 597 LMNA Prelamin-A/C;Lamin-A/C yes no 2 1.0971E-22 159.09 4 2 0.63307 0.79848 47.271 6 Median 0.61889 0.78418 3.8452 4 0 Median 1.2949 1.9419 1.0145 2 0 Median 185770000 110420000 75347000 165170000 101850000 63321000 20594000 8567900 12026000 12295 1229 12619 44285;44286;44287;44288;44289;44290 66630;66631;66632;66633;66634;66635;66636;66637;66638;66639;66640;66641 66637 12 TVLDPVTGDLSDTR FLYLNIGLQNGVLLRTVLDPVTGDLSDTRT RTVLDPVTGDLSDTRTRYLGSRPVKLFRVR R T V T R T 0 1 0 3 0 0 0 1 0 0 2 0 0 0 1 1 3 0 0 2 0 0 14 0 1487.7468 A8K6V3;Q15393;B3KQH1 A8K6V3 677 690 SF3B3 Splicing factor 3B subunit 3 yes no 2 3.2988E-14 112.15 2 0.53678 0.70188 NaN 1 Median 0.53678 0.70188 NaN 1 0 Median NaN NaN NaN 0 0 Median 10086000 7289100 2796500 10086000 7289100 2796500 0 0 0 12296 628 12620 44291;44292 66642;66643 66643 2 TVLDQQQTPSR QVRRDYLKEAVTTLKTVLDQQQTPSRLAVT TTLKTVLDQQQTPSRLAVTRVIQALAMKGD K T V S R L 0 1 0 1 0 3 0 0 0 0 1 0 0 0 1 1 2 0 0 1 0 0 11 0 1271.647 E5KNY5;P42704;B4DSR0 E5KNY5 1129 1139 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 8.2438E-12 140.45 3 2 0.26603 0.35289 28.572 3 Median 0.26603 0.35289 28.572 3 0 Median NaN NaN NaN 0 0 Median 48073000 30807000 17267000 40762000 30807000 9955700 7311100 0 7311100 12297 1001 12621 44293;44294;44295;44296;44297 66644;66645;66646;66647;66648;66649;66650;66651 66648 8 TVLDTSYALIGETVNNYR SHKPHPVETSQPSDKTVLDTSYALIGETVN DTSYALIGETVNNYRSTKYEMYSKNAEKPS K T V Y R S 1 1 2 1 0 0 1 1 0 1 2 0 0 0 0 1 3 0 2 2 0 0 18 0 2028.0164 Q03188;H0Y8J2 Q03188 379 396 CENPC Centromere protein C yes no 2 2.4346E-50 194.3 5 1 0.74195 1.1109 19.459 2 Median 0.69625 0.96807 NaN 1 0 Median 0.79066 1.2747 NaN 1 0 Median 109740000 55479000 54258000 21677000 3143000 18534000 88059000 52336000 35723000 12298 1439 12622 44298;44299;44300;44301;44302;44303 66652;66653;66654;66655;66656;66657;66658 66652 7 TVLEHYALEDDPLAAFK AFLKTIALNGVEDVRTVLEHYALEDDPLAA LEHYALEDDPLAAFKQRQSRLEQEEQQRLA R T V F K Q 3 0 0 2 0 0 2 0 1 0 3 1 0 1 1 0 1 0 1 1 0 0 17 0 1930.9676 Q0VAB1;A0A024R0M6;Q3ZCQ8;M0R0C3;M0R2F8 Q0VAB1 399 415 TIMM50 Mitochondrial import inner membrane translocase subunit TIM50 yes no 3 0.019554 58.164 2 0.37268 0.47295 NaN 1 Median 0.37268 0.47295 NaN 1 0 Median NaN NaN NaN 0 0 Median 9742200 7708300 2033900 9742200 7708300 2033900 0 0 0 12299 40 12623 44304;44305 66659;66660 66660 2 TVLGTPEVLLGALPGAGGTQR VAISCQYRIATKDRKTVLGTPEVLLGALPG EVLLGALPGAGGTQRLPKMVGVPAALDMML K T V Q R L 2 1 0 0 0 1 1 5 0 0 4 0 0 0 2 0 3 0 0 2 0 0 21 0 2006.116 E9KL44;P40939 E9KL44 167 187 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 8.8049E-19 144.4 6 2 0.6141 0.82806 35.281 6 Median 0.57833 0.769 11.428 4 0 Median 0.95412 1.4869 5.8567 2 0 Median 105690000 62811000 42881000 55725000 37554000 18172000 49967000 25258000 24710000 12300 1020 12624 44306;44307;44308;44309;44310;44311;44312;44313 66661;66662;66663;66664;66665;66666;66667;66668;66669;66670;66671 66661 11 TVLHTGSAPSSSTPFNK VLDHLVIQRMDTTGKTVLHTGSAPSSSTPF LHTGSAPSSSTPFNKEELSAILKFGAEELF K T V N K E 1 0 1 0 0 0 0 1 1 0 1 1 0 1 2 4 3 0 0 1 0 0 17 0 1729.8635 O14646 O14646 946 962 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 3 1.2117E-07 75.143 3 1 0.65101 0.82065 25.339 3 Median 0.62806 0.77884 7.3955 2 0 Median 0.79924 1.1966 NaN 1 0 Median 53651000 35495000 18156000 45953000 30963000 14990000 7698200 4531700 3166500 12301 1169 12625 44314;44315;44316;44317 66672;66673;66674;66675;66676;66677 66674 6 TVLIACNVK CLPGKKGGYTSGTFRTVLIACNVKQMSKDA TSGTFRTVLIACNVKQMSKDAQPSFSAEDI R T V V K Q 1 0 1 0 1 0 0 0 0 1 1 1 0 0 0 0 1 0 0 2 0 0 9 0 1016.5689 Q8NHX6;Q53HJ4;B2R7C5;A0A0S2Z4T1;A0A0S2Z492;P25205;B4DUQ9;J3KQ69;B4DS46 Q8NHX6 258 266 HCC5;MCM3 DNA helicase;DNA replication licensing factor MCM3 yes no 2 0.050749 42.869 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4325100 4325100 0 4325100 4325100 0 0 0 0 12302 463 12626 44318 66678 66678 1 TVLQEIKR LTTTSRAEFGDFDIKTVLQEIKRGKRMKCT FGDFDIKTVLQEIKRGKRMKCTLCSQPGAT K T V K R G 0 1 0 0 0 1 1 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 8 1 985.59203 Q8IWS0;A0A0D9SGE8;Q5JRC6;B4E138 Q8IWS0 267 274 PHF6 PHD finger protein 6 yes no 3 0.0035538 63.565 1 0.8724 1.1436 NaN 1 Median 0.8724 1.1436 NaN 1 0 Median NaN NaN NaN 0 0 Median 12031000 6866300 5164900 12031000 6866300 5164900 0 0 0 12303 1625 12627 44319 66679;66680 66680 2 TVLQELINVLK FNMILKEQSLAAESKTVLQELINVLKTDLL AESKTVLQELINVLKTDLLSSLEMILSPTV K T V L K T 0 0 1 0 0 1 1 0 0 1 3 1 0 0 0 0 1 0 0 2 0 0 11 0 1268.7704 P52732;B2RAM6 P52732 619 629 KIF11 Kinesin-like protein KIF11;Kinesin-like protein yes no 2 6.8926E-06 133.13 3 0.46891 0.59344 NaN 1 Median 0.46891 0.59344 NaN 1 0 Median NaN NaN NaN 0 0 Median 8761500 7371300 1390100 8761500 7371300 1390100 0 0 0 12304 1366 12628 44320;44321;44322 66681;66682;66683 66682 3 TVLQIDDNVTSAVEGINR YEALEKYPMAYVDYKTVLQIDDNVTSAVEG QIDDNVTSAVEGINRMTRALMDSLGPEWRL K T V N R M 1 1 2 2 0 1 1 1 0 2 1 0 0 0 0 1 2 0 0 3 0 0 18 0 1942.996 Q15785;B4DXU3 Q15785 110 127 TOMM34 Mitochondrial import receptor subunit TOM34 yes no 2 6.8986E-15 131.53 2 0.60065 0.81674 37 2 Median 0.60065 0.81674 37 2 0 Median NaN NaN NaN 0 0 Median 5397900 3185100 2212900 5397900 3185100 2212900 0 0 0 12305 1516 12629 44323;44324 66684;66685 66684 2 TVLQLSLR LQKIYEANAKRFSRKTVLQLSLRILDILEY AKRFSRKTVLQLSLRILDILEYIHEHEYVH K T V L R I 0 1 0 0 0 1 0 0 0 0 3 0 0 0 0 1 1 0 0 1 0 0 8 0 928.57057 A8K245;Q99986;H0YJ50 A8K245 153 160 VRK1 Serine/threonine-protein kinase VRK1 yes no 2 0.0028309 113.41 3 2 0.93803 1.2834 41.248 5 Median 1.0344 1.3848 11.216 3 0 Median 0.46132 0.67676 1.6308 2 0 Median 57610000 33596000 24014000 30599000 15364000 15235000 27011000 18232000 8779000 12306 582 12630 44325;44326;44327;44328;44329 66686;66687;66688;66689;66690;66691;66692 66687 7 TVLSHQGAVCEFCQPR LLAFAKRRNCCIGCRTVLSHQGAVCEFCQP VLSHQGAVCEFCQPRESELYQKEVSHLNAL R T V P R E 1 1 0 0 2 2 1 1 1 0 1 0 0 1 1 1 1 0 0 2 0 0 16 0 1887.872 A0A024R4F4;Q308M6;M0R2B7;P28340;M0R3H8 A0A024R4F4 1017 1032 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 3 0.0010529 51.265 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2909900 2909900 0 2909900 2909900 0 0 0 0 12307 123 12631 44330 66693 66693 1 TVLVALDTVSCLEQGNNSR EDPKEGIKIVGLTEKTVLVALDTVSCLEQG ALDTVSCLEQGNNSRTVASTAMNSQSSRSH K T V S R T 1 1 2 1 1 1 1 1 0 0 3 0 0 0 0 2 2 0 0 3 0 0 19 0 2075.0317 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 183 201 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 6.8092E-24 155.43 8 0.929 1.2003 7.5324 4 Linear 0.929 1.2003 7.5324 4 0 Linear NaN NaN NaN 0 0 Median 36081000 16986000 19095000 36081000 16986000 19095000 0 0 0 12308 1216 12632 44331;44332;44333;44334;44335;44336;44337;44338 66694;66695;66696;66697;66698;66699;66700;66701;66702;66703;66704 66698 11 TVNEDVEEMEIDEQTK YELLSEENKENGIIKTVNEDVEEMEIDEQT VNEDVEEMEIDEQTKVIVKDRLLGIKTETP K T V T K V 0 0 1 2 0 1 5 0 0 1 0 1 1 0 0 0 2 0 0 2 0 0 16 0 1907.8306 D3DS96;Q9NRL2;Q59G54 D3DS96 1029 1044 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 2.4168E-09 88.224 2 0.68249 1.006 9.4288 2 Median NaN NaN NaN 0 0 Median 0.68249 1.006 9.4288 2 0 Median 13319000 7696900 5622300 0 0 0 13319000 7696900 5622300 12309 979 12633 44339;44340 66705;66706;66707;66708;66709 66709 354 5 TVNELQNLSSAEVVVPR VPSFAAGRVIGKGGKTVNELQNLSSAEVVV NELQNLSSAEVVVPRDQTPDENDQVVVKIT K T V P R D 1 1 2 0 0 1 2 0 0 0 2 0 0 0 1 2 1 0 0 4 0 0 17 0 1853.9847 O00425 O00425 509 525 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 2.0866E-18 154.65 3 0.53349 0.73038 2.3516 2 Median 0.53349 0.73038 2.3516 2 0 Median NaN NaN NaN 0 0 Median 11918000 5314300 6603500 11918000 5314300 6603500 0 0 0 12310 1167 12634 44341;44342;44343 66710;66711;66712;66713 66710 4 TVNELQNLTAAEVVVPR VPASAAGRVIGKGGKTVNELQNLTAAEVVV NELQNLTAAEVVVPRDQTPDENDQVIVKII K T V P R D 2 1 2 0 0 1 2 0 0 0 2 0 0 0 1 0 2 0 0 4 0 0 17 0 1852.0054 Q9NZI8;D3DTW3 Q9NZI8 509 525 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes no 2 1.0899E-30 147.18 5 0.86585 1.1767 19.053 4 Median 0.86585 1.1767 19.053 4 0 Median NaN NaN NaN 0 0 Median 25989000 16507000 9482400 25989000 16507000 9482400 0 0 0 12311 1772 12635 44344;44345;44346;44347;44348 66714;66715;66716;66717;66718;66719;66720;66721;66722;66723;66724 66720 11 TVNVVQFEPSK TKVPLVAEKPLKEPKTVNVVQFEPSKGAIG KEPKTVNVVQFEPSKGAIGKAYKKDAKLVM K T V S K G 0 0 1 0 0 1 1 0 0 0 0 1 0 1 1 1 1 0 0 3 0 0 11 0 1246.6558 A0A090N8G0;P41250 A0A090N8G0 437 447 GARS Glycine--tRNA ligase yes no 2 0.0011859 72.2 1 1 0.90661 1.15 NaN 1 Median 0.90661 1.15 NaN 1 0 Median NaN NaN NaN 0 0 Median 16313000 5420300 10892000 10323000 5420300 4902400 5989900 0 5989900 12312 382 12636 44349;44350 66725;66726;66727 66725 3 TVPEELVKPEELSK DKATVLTTERKKRGKTVPEELVKPEELSKY KTVPEELVKPEELSKYRQVASHVGLHSASI K T V S K Y 0 0 0 0 0 0 4 0 0 0 2 2 0 0 2 1 1 0 0 2 0 0 14 1 1596.8611 Q9UMS4;F5GY56;H0YGF3 Q9UMS4 193 206 PRPF19 Pre-mRNA-processing factor 19 yes no 3 0.032249 48.351 1 1 1.0796 1.5116 42.549 2 Median 0.90765 1.1189 NaN 1 0 Median 1.2842 2.0423 NaN 1 0 Median 16422000 8320100 8101900 6103000 3098800 3004200 10319000 5221400 5097700 12313 1795 12637 44351;44352 66728;66729 66728 2 TVPLYESPR LTIGTIDEIQKLHIRTVPLYESPRKICYQE QKLHIRTVPLYESPRKICYQEVSQCFGVLS R T V P R K 0 1 0 0 0 0 1 0 0 0 1 0 0 0 2 1 1 0 1 1 0 0 9 0 1060.5553 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 714 722 DDB1 DNA damage-binding protein 1 yes no 2 0.012958 58.981 1 2 0.81861 1.2725 0.52707 2 Median NaN NaN NaN 0 0 Median 0.81861 1.2725 0.52707 2 0 Median 46871000 25775000 21095000 0 0 0 46871000 25775000 21095000 12314 1520 12638 44353;44354;44355 66730;66731;66732;66733 66732 4 TVPPVDIVFER RNDHDDDEDEEVISKTVPPVDIVFERDMLT VISKTVPPVDIVFERDMLTQTYDLIERRGT K T V E R D 0 1 0 1 0 0 1 0 0 1 0 0 0 1 2 0 1 0 0 3 0 0 11 0 1270.6921 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 356 366 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.012837 51.268 1 0.77996 1.097 NaN 1 Median 0.77996 1.097 NaN 1 0 Median NaN NaN NaN 0 0 Median 5352300 3434100 1918200 5352300 3434100 1918200 0 0 0 12315 1457 12639 44356 66734;66735 66734 2 TVPVGGVVK GSLRLWEVATARCVRTVPVGGVVKSVAWNP TARCVRTVPVGGVVKSVAWNPSPAVCLVAA R T V V K S 0 0 0 0 0 0 0 2 0 0 0 1 0 0 1 0 1 0 0 4 0 0 9 0 854.52255 B2RDN4;Q14137;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 B2RDN4 450 458 BOP1 Ribosome biogenesis protein BOP1 yes no 2 0.046848 40.268 1 0.89602 1.1179 NaN 1 Median 0.89602 1.1179 NaN 1 0 Median NaN NaN NaN 0 0 Median 42505000 21254000 21251000 42505000 21254000 21251000 0 0 0 12316 738 12640 44357 66736 66736 1 TVQGSGHQEHINIHK FVNDVSEKEQRWGAKTVQGSGHQEHINIHK TVQGSGHQEHINIHKLRENVFQEHQTLKEK K T V H K L 0 0 1 0 0 2 1 2 3 2 0 1 0 0 0 1 1 0 0 1 0 0 15 0 1683.8441 A0A024R5M3;Q53HG7;Q14247;Q76MU0 A0A024R5M3 43 57 CTTN;EMS1 Src substrate cortactin yes no 3 0.0010641 93.649 1 1.2341 1.5475 NaN 1 Median 1.2341 1.5475 NaN 1 0 Median NaN NaN NaN 0 0 Median 4322400 1753400 2569000 4322400 1753400 2569000 0 0 0 12317 147 12641 44358 66737 66737 1 TVQIEASTVEIEER YPERVIPGAAEKIERTVQIEASTVEIEERG RTVQIEASTVEIEERGVKLRLTVVDTPGYG R T V E R G 1 1 0 0 0 1 4 0 0 2 0 0 0 0 0 1 2 0 0 2 0 0 14 0 1602.8101 C9J2Q4;B5MCX3;Q15019;B5MD47;C9IY94;C9IZU3;C9JQJ4;C9J938;H7C310;C9JB25;C9JZI2 C9J2Q4 38 51 SEPT2 Septin-2 yes no 2 1.9566E-05 114.24 3 0.94165 1.2713 40.864 3 Median 0.94165 1.2713 40.864 3 0 Median NaN NaN NaN 0 0 Median 7665100 3581900 4083200 7665100 3581900 4083200 0 0 0 12318 900 12642 44359;44360;44361 66738;66739;66740;66741;66742 66739 5 TVQIPVYDFVSHSR NELILKTLKEITEGKTVQIPVYDFVSHSRK KTVQIPVYDFVSHSRKEETVTVYPADVVLF K T V S R K 0 1 0 1 0 1 0 0 1 1 0 0 0 1 1 2 1 0 1 3 0 0 14 0 1646.8417 A0A024R912;Q9BZX2;B4DGD3 A0A024R912 106 119 UCK2 Uridine kinase;Uridine-cytidine kinase 2 yes no 3 0.0055539 54.09 1 1.0787 1.4992 NaN 1 Median 1.0787 1.4992 NaN 1 0 Median NaN NaN NaN 0 0 Median 4537300 2315300 2222000 4537300 2315300 2222000 0 0 0 12319 211 12643 44362 66743 66743 1 TVQLTSSELESTLETLK DAHLLVESKNLDFQKTVQLTSSELESTLET QLTSSELESTLETLKAENQPIRDVLKQLIL K T V L K A 0 0 0 0 0 1 3 0 0 0 4 1 0 0 0 3 4 0 0 1 0 0 17 0 1877.9834 E5KNY5;P42704;B4DSR0 E5KNY5 656 672 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 1.9035E-55 214.61 4 0.39297 0.49606 NaN 1 Median 0.39297 0.49606 NaN 1 0 Median NaN NaN NaN 0 0 Median 29040000 26102000 2937900 29040000 26102000 2937900 0 0 0 12320 1001 12644 44363;44364;44365;44366 66744;66745;66746;66747 66744 4 TVQSLEIDLDSMR AEVGAAETTLTELRRTVQSLEIDLDSMRNL RRTVQSLEIDLDSMRNLKASLENSLREVEA R T V M R N 0 1 0 2 0 1 1 0 0 1 2 0 1 0 0 2 1 0 0 1 0 0 13 0 1505.7396 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__H-INV:HIT000015463 F8VZY9 302 314 KRT18 Keratin, type I cytoskeletal 18 yes no 2 2.49E-10 144.17 2 3 1.2117 1.9262 114.85 3 Plateau 0.19699 0.26254 NaN 1 0 Median 1.1999 1.9192 0.51523 2 0 Median 92049000 41672000 50377000 6186300 5386200 800020 85862000 36285000 49577000 12321 252 12645;12646 44367;44368;44369;44370;44371 66748;66749;66750;66751;66752;66753 66749 101 6 TVQTAVFLYSLYK QGTDAILADEMGLGKTVQTAVFLYSLYKEG GKTVQTAVFLYSLYKEGHSKGPFLVSAPLS K T V Y K E 1 0 0 0 0 1 0 0 0 0 2 1 0 1 0 1 2 0 2 2 0 0 13 0 1531.8286 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 732 744 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 3.6812E-15 152.96 5 2 0.73557 0.91838 36.086 6 Median 0.70343 0.87202 6.0971 4 0 Median 1.141 1.7562 3.905 2 0 Median 128480000 67696000 60788000 80388000 45850000 34538000 48096000 21846000 26250000 12322 428 12647 44372;44373;44374;44375;44376;44377;44378 66754;66755;66756;66757;66758;66759;66760;66761;66762;66763;66764 66756 11 TVSLGAGAKDELHIVEAEAMNYEGSPIK FKVDNDENEHQLSLRTVSLGAGAKDELHIV IVEAEAMNYEGSPIKVTLATLKMSVQPTVS R T V I K V 4 0 1 1 0 0 4 3 1 2 2 2 1 0 1 2 1 0 1 2 0 0 28 1 2928.4539 A0A0S2Z4G7;A0A0S2Z491;P06748;A0A140VJQ2;A4ZU86 A0A0S2Z4G7 46 73 NPM1 Nucleophosmin yes no 3;4 6.8144E-18 80.711 4 0.64584 0.80361 14.239 3 Plateau 0.64584 0.80361 14.239 3 0 Plateau NaN NaN NaN 0 0 Median 45957000 24466000 21492000 45957000 24466000 21492000 0 0 0 12323 462 12648;12649 44379;44380;44381;44382 66765;66766;66767;66768;66769;66770 66767 163 6 TVSLLDENNVSSYLSK SRSQGCSEQVLTVLKTVSLLDENNVSSYLS VSLLDENNVSSYLSKNILAFRDQNILLGTT K T V S K N 0 0 2 1 0 0 1 0 0 0 3 1 0 0 0 4 1 0 1 2 0 0 16 0 1767.8891 P78527 P78527 3303 3318 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 2.8688E-33 179.59 4 2 0.53483 0.67126 32.121 5 Median 0.50639 0.64603 6.5786 4 0 Median 0.85166 1.2996 NaN 1 0 Median 82415000 51052000 31362000 56991000 38983000 18008000 25423000 12069000 13354000 12324 1427 12650 44383;44384;44385;44386;44387;44388 66771;66772;66773;66774;66775;66776;66777;66778;66779;66780 66771 10 TVSNSVPGRPVSSLGPGQTVSSSGPTIK SGPGRSISGSIPAGRTVSNSVPGRPVSSLG LGPGQTVSSSGPTIKPKCTVVSETISSKNI R T V I K P 0 1 1 0 0 1 0 4 0 1 1 1 0 0 4 7 3 0 0 4 0 0 28 1 2695.4141 B4E223;Q68D10 B4E223 505 532 SPTY2D1 Protein SPT2 homolog yes no 3 6.3868E-09 85.798 1 1 1.4917 2.2918 NaN 1 Median NaN NaN NaN 0 0 Median 1.4917 2.2918 NaN 1 0 Median 6225200 3146900 3078300 936350 936350 0 5288900 2210500 3078300 12325 888 12651 44389;44390 66781;66782 66781 2 TVSQIISLQTLK TEQFYRKLLNKHGIKTVSQIISLQTLKKEY GIKTVSQIISLQTLKKEYKSYEAKLRLLSS K T V L K K 0 0 0 0 0 2 0 0 0 2 2 1 0 0 0 2 2 0 0 1 0 0 12 0 1329.7868 O76021;Q32Q62;J3QSV6;A0PJ61;A0PJ87;I3L3U9;I3L3C4;I3L234 O76021 125 136 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 1.1758E-24 194.12 6 2 0.65026 0.85798 25.08 6 Median 0.65856 0.86611 0.95151 4 0 Median 0.33589 0.53156 0.4858 2 0 Median 894300000 551030000 343280000 686570000 396200000 290370000 207740000 154830000 52908000 12326 1210 12652 44391;44392;44393;44394;44395;44396;44397;44398 66783;66784;66785;66786;66787;66788;66789;66790;66791;66792;66793;66794;66795;66796;66797;66798;66799;66800;66801;66802 66786 20 TVSQIISLQTLKK TEQFYRKLLNKHGIKTVSQIISLQTLKKEY IKTVSQIISLQTLKKEYKSYEAKLRLLSSF K T V K K E 0 0 0 0 0 2 0 0 0 2 2 2 0 0 0 2 2 0 0 1 0 0 13 1 1457.8817 O76021;Q32Q62;J3QSV6;A0PJ61;A0PJ87;I3L3U9;I3L3C4;I3L234 O76021 125 137 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2;3 5.1862E-07 130.1 8 2 0.678 0.83355 33.378 8 Median 0.70564 0.86625 13.747 6 0 Median 0.288 0.46129 0.076168 2 0 Median 262060000 166850000 95203000 214670000 132850000 81813000 47391000 34001000 13390000 12327 1210 12653 44399;44400;44401;44402;44403;44404;44405;44406;44407;44408 66803;66804;66805;66806;66807;66808;66809;66810;66811;66812;66813;66814;66815;66816;66817;66818;66819 66804 17 TVTAMDVVYALK VIRDAVTYTEHAKRKTVTAMDVVYALKRQG KRKTVTAMDVVYALKRQGRTLYGFGG____ K T V L K R 2 0 0 1 0 0 0 0 0 0 1 1 1 0 0 0 2 0 1 3 0 0 12 0 1309.6952 B2R4R0;P62805;Q0VAS5 B2R4R0 81 92 HIST1H4H;HIST1H4A Histone H4 yes no 2 1.5109E-20 150.35 118 36 0.71359 0.94137 17.872 72 Median 0.74067 0.94476 18.206 55 0 Median 0.59924 0.91376 15.463 17 0 Median 41833000000 29675000000 12158000000 29327000000 19044000000 10283000000 12506000000 10631000000 1874900000 12328 686 12654;12655 44409;44410;44411;44412;44413;44414;44415;44416;44417;44418;44419;44420;44421;44422;44423;44424;44425;44426;44427;44428;44429;44430;44431;44432;44433;44434;44435;44436;44437;44438;44439;44440;44441;44442;44443;44444;44445;44446;44447;44448;44449;44450;44451;44452;44453;44454;44455;44456;44457;44458;44459;44460;44461;44462;44463;44464;44465;44466;44467;44468;44469;44470;44471;44472;44473;44474;44475;44476;44477;44478;44479;44480;44481;44482;44483;44484;44485;44486;44487;44488;44489;44490;44491;44492;44493;44494;44495;44496;44497;44498;44499;44500;44501;44502;44503;44504;44505;44506;44507;44508;44509;44510;44511;44512;44513;44514;44515;44516;44517;44518;44519;44520;44521;44522;44523;44524;44525;44526;44527;44528;44529;44530;44531;44532;44533;44534;44535;44536;44537;44538;44539;44540;44541;44542;44543;44544;44545;44546;44547;44548;44549;44550;44551;44552;44553;44554;44555;44556;44557;44558;44559;44560;44561;44562 66820;66821;66822;66823;66824;66825;66826;66827;66828;66829;66830;66831;66832;66833;66834;66835;66836;66837;66838;66839;66840;66841;66842;66843;66844;66845;66846;66847;66848;66849;66850;66851;66852;66853;66854;66855;66856;66857;66858;66859;66860;66861;66862;66863;66864;66865;66866;66867;66868;66869;66870;66871;66872;66873;66874;66875;66876;66877;66878;66879;66880;66881;66882;66883;66884;66885;66886;66887;66888;66889;66890;66891;66892;66893;66894;66895;66896;66897;66898;66899;66900;66901;66902;66903;66904;66905;66906;66907;66908;66909;66910;66911;66912;66913;66914;66915;66916;66917;66918;66919;66920;66921;66922;66923;66924;66925;66926;66927;66928;66929;66930;66931;66932;66933;66934;66935;66936;66937;66938;66939;66940;66941;66942;66943;66944;66945;66946;66947;66948;66949;66950;66951;66952;66953;66954;66955;66956;66957;66958;66959;66960;66961;66962;66963;66964;66965;66966;66967;66968;66969;66970;66971;66972;66973;66974;66975;66976;66977;66978;66979;66980;66981;66982;66983;66984;66985;66986;66987;66988;66989;66990;66991;66992;66993;66994;66995;66996;66997;66998;66999;67000;67001;67002;67003;67004;67005;67006;67007;67008;67009;67010;67011;67012;67013;67014;67015;67016;67017;67018;67019;67020;67021;67022;67023;67024;67025;67026;67027;67028;67029;67030;67031;67032;67033;67034;67035;67036;67037;67038;67039;67040;67041;67042;67043;67044;67045;67046;67047;67048;67049;67050;67051;67052;67053;67054;67055;67056;67057;67058;67059;67060;67061;67062;67063 66906 237 240 TVTAMDVVYALKR VIRDAVTYTEHAKRKTVTAMDVVYALKRQG RKTVTAMDVVYALKRQGRTLYGFGG_____ K T V K R Q 2 1 0 1 0 0 0 0 0 0 1 1 1 0 0 0 2 0 1 3 0 0 13 1 1465.7963 B2R4R0;P62805;Q0VAS5 B2R4R0 81 93 HIST1H4H;HIST1H4A Histone H4 yes no 2;3 5.097E-17 160.75 25 11 0.73006 1.0024 19.684 29 Median 0.77079 1.0271 7.9025 18 0 Median 0.42778 0.73045 26.537 11 0 Median 2957000000 1764400000 1192600000 2145100000 1208100000 936980000 811900000 556300000 255600000 12329 686 12656;12657 44563;44564;44565;44566;44567;44568;44569;44570;44571;44572;44573;44574;44575;44576;44577;44578;44579;44580;44581;44582;44583;44584;44585;44586;44587;44588;44589;44590;44591;44592;44593;44594;44595;44596;44597;44598 67064;67065;67066;67067;67068;67069;67070;67071;67072;67073;67074;67075;67076;67077;67078;67079;67080;67081;67082;67083;67084;67085;67086;67087;67088;67089;67090;67091;67092;67093;67094;67095;67096;67097;67098;67099;67100;67101;67102;67103;67104;67105;67106;67107;67108;67109;67110;67111;67112;67113;67114;67115;67116;67117;67118;67119;67120;67121;67122;67123;67124;67125;67126;67127;67128;67129;67130;67131;67132;67133;67134 67118 237 70 TVTCLCLSSSGQR LKGGQLLVSLKNHHKTVTCLCLSSSGQRLL HKTVTCLCLSSSGQRLLSGSLDRKVKVYST K T V Q R L 0 1 0 0 2 1 0 1 0 0 2 0 0 0 0 3 2 0 0 1 0 0 13 0 1467.681 Q8TED0;H0Y8P4 Q8TED0 250 262 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 7.1256E-05 121.9 4 1 0.96112 1.3144 7.4071 4 Median 0.96112 1.3144 7.4071 4 0 Median NaN NaN NaN 0 0 Median 31753000 17918000 13835000 29925000 16089000 13835000 1828500 1828500 0 12330 1660 12658 44599;44600;44601;44602;44603 67135;67136;67137;67138;67139;67140;67141;67142;67143;67144;67145;67146 67135 12 TVTELVTK FDPKFAFKEVEVQAKTVTELVTKKKPKAEG EVEVQAKTVTELVTKKKPKAEGYAEGDLTL K T V T K K 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 3 0 0 2 0 0 8 0 889.51205 Q8IY81;B4DKU3 Q8IY81 226 233 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 1 4.8307E-11 162.25 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 980050 980050 0 980050 980050 0 0 0 0 12331 1628 12659 44604 67147 67147 1 TVTLGGDVFDPHGTLSGGAR DNAKKVAFDKRIMTRTVTLGGDVFDPHGTL GDVFDPHGTLSGGARSQAASILTKFQELKD R T V A R S 1 1 0 2 0 0 0 5 1 0 2 0 0 1 1 1 3 0 0 2 0 0 20 0 1955.9701 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;B3KM27 A0A024R158 649 668 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2;3 9.0841E-32 158.89 10 1 0.69055 0.96985 9.0816 8 Median 0.69679 0.96864 8.7914 7 0 Median 0.63379 1.0552 NaN 1 0 Median 692690000 416930000 275760000 534860000 319250000 215610000 157830000 97680000 60145000 12332 50 12660 44605;44606;44607;44608;44609;44610;44611;44612;44613;44614;44615 67148;67149;67150;67151;67152;67153;67154;67155;67156;67157;67158;67159;67160;67161;67162;67163;67164;67165;67166;67167;67168 67152 21 TVTNAVVTVPAYFNDSQR VLTKMKEIAEAYLGKTVTNAVVTVPAYFND NAVVTVPAYFNDSQRQATKDAGTIAGLNVL K T V Q R Q 2 1 2 1 0 1 0 0 0 0 0 0 0 1 1 1 3 0 1 4 0 0 18 0 1980.9905 V9HW22;P11142;Q53GZ6;Q96IS6;B3KTV0;Q53HF2;E9PN89;B4DTX2;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PI65 V9HW22 138 155 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 2 4.0966E-72 228.93 6 2 0.57361 0.78764 57.177 6 Median 0.56048 0.81079 5.9506 4 0 Linear 1.4062 2.2902 2.442 2 0 Median 405390000 230180000 175210000 260060000 170600000 89459000 145330000 59580000 85752000 12333 1253 12661 44616;44617;44618;44619;44620;44621;44622;44623 67169;67170;67171;67172;67173;67174;67175;67176;67177;67178;67179;67180;67181;67182;67183;67184;67185;67186 67169 18 TVTPAMVEGIYK GETEELSRLAGYGPRTVTPAMVEGIYKYNS GPRTVTPAMVEGIYKYNSDRKRFTQIPAKT R T V Y K Y 1 0 0 0 0 0 1 1 0 1 0 1 1 0 1 0 2 0 1 2 0 0 12 0 1307.6795 D6W648;Q9P1Y5;A2VCM1;Q8WZ12 D6W648 1203 1214 hCG_2004001;CAMSAP3;KIAA1543 Calmodulin-regulated spectrin-associated protein 3 yes no 2 0.010419 70.908 1 0.72115 0.94241 NaN 1 Median 0.72115 0.94241 NaN 1 0 Median NaN NaN NaN 0 0 Median 75765000 42817000 32948000 75765000 42817000 32948000 0 0 0 12334 998 12662 44624 67187 67187 361 1 TVTSILYPLLR KISDWALKLSSLDRRTVTSILYPLLRLRQA LDRRTVTSILYPLLRLRQACCHPQAVRGEF R T V L R L 0 1 0 0 0 0 0 0 0 1 3 0 0 0 1 1 2 0 1 1 0 0 11 0 1274.7598 A0A0D9SFM0;Q149N8;B3KX98 A0A0D9SFM0 966 976 SHPRH E3 ubiquitin-protein ligase SHPRH yes no 2 1.9323E-05 96.711 2 0.84562 1.141 8.3008 2 Median 0.84562 1.141 8.3008 2 0 Median NaN NaN NaN 0 0 Median 3917200 1968000 1949200 3917200 1968000 1949200 0 0 0 12335 436 12663 44625;44626 67188;67189 67189 2 TVVLPPIVASR DTTCIKLKIDSEIKKTVVLPPIVASRGQSE EIKKTVVLPPIVASRGQSEEPAGKTKSMQE K T V S R G 1 1 0 0 0 0 0 0 0 1 1 0 0 0 2 1 1 0 0 3 0 0 11 0 1150.7074 B4DLG2;O75152;E9PQ61;E9PBY7 B4DLG2 389 399 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 2 0.012701 46.158 1 1 0.76293 1.0279 NaN 1 Median 0.76293 1.0279 NaN 1 0 Median NaN NaN NaN 0 0 Median 7846700 3365600 4481100 5693400 3365600 2327800 2153300 0 2153300 12336 826 12664 44627;44628 67190;67191 67190 2 TVVPCDFGLSTEEILAADDK YEDIIDDLPCRFKYRTVVPCDFGLSTEEIL DFGLSTEEILAADDKELNRWCSLKKTCMYR R T V D K E 2 0 0 3 1 0 2 1 0 1 2 1 0 1 1 1 2 0 0 2 0 0 20 0 2179.0355 Q8N9T8;A0A024R7C4;B4DUT2 Q8N9T8 527 546 KRI1;FLJ12949 Protein KRI1 homolog yes no 2 8.9505E-16 137.39 3 0.74146 0.94964 16.42 3 Median 0.74146 0.94964 16.42 3 0 Median NaN NaN NaN 0 0 Median 20168000 10373000 9794600 20168000 10373000 9794600 0 0 0 12337 1645 12665 44629;44630;44631 67192;67193;67194;67195;67196;67197 67193 6 TVVSGLVQFVPK SLYVEKIDVGEAEPRTVVSGLVQFVPKEEL EPRTVVSGLVQFVPKEELQDRLVVVLCNLK R T V P K E 0 0 0 0 0 1 0 1 0 0 1 1 0 1 1 1 1 0 0 4 0 0 12 0 1272.7442 A0A0S2Z4R1;P54577 A0A0S2Z4R1 401 412 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes no 2 0.0011336 91.584 3 0.25031 0.31907 69.026 2 Median 0.25031 0.31907 69.026 2 0 Median NaN NaN NaN 0 0 Median 11576000 9258700 2317500 11576000 9258700 2317500 0 0 0 12338 468 12666 44632;44633;44634 67198;67199;67200 67200 3 TVYSVFGFSFK EQIEDEIKGCLDFLRTVYSVFGFSFKLNLS DFLRTVYSVFGFSFKLNLSTRPEKFLGDIE R T V F K L 0 0 0 0 0 0 0 1 0 0 0 1 0 3 0 2 1 0 1 2 0 0 11 0 1280.6441 Q5M7Z9;Q53GX7;P26639;B4DKZ9;B3KTN2 Q5M7Z9 485 495 TARS Threonine--tRNA ligase, cytoplasmic yes no 2 0.034757 77.533 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1247400 1247400 0 1247400 1247400 0 0 0 0 12339 1298 12667 44635 67201 67201 1 TVYVELLPK RKKPLGERPKDEDERTVYVELLPKNVNHSW KDEDERTVYVELLPKNVNHSWIERVFGKCG R T V P K N 0 0 0 0 0 0 1 0 0 0 2 1 0 0 1 0 1 0 1 2 0 0 9 0 1060.6168 Q4G0J3;D6RFF0 Q4G0J3 126 134 LARP7 La-related protein 7 yes no 2 0.037632 47.574 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12340 1534 12668 44636 67202 67202 1 TWTQTYK ILNSTTIEISELPVRTWTQTYKEQVLEPML EISELPVRTWTQTYKEQVLEPMLNGTEKTP R T W Y K E 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 3 1 1 0 0 0 7 0 926.44978 P11388 P11388 930 936 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.014861 92.467 2 0.76451 1.2041 4.519 2 Median NaN NaN NaN 0 0 Median 0.76451 1.2041 4.519 2 0 Median 92335000 51591000 40744000 0 0 0 92335000 51591000 40744000 12341 1256 12669 44637;44638 67203;67204;67205;67206 67204 4 TYADYESVNECMEGVCK HTILLVQPTKRPEGRTYADYESVNECMEGV ADYESVNECMEGVCKMYEEHLKRMNPNSPS R T Y C K M 1 0 1 1 2 0 3 1 0 0 0 1 1 0 0 1 1 0 2 2 0 0 17 0 2053.8067 A0A024R6D4;P84090;G3V279 A0A024R6D4 18 34 ERH Enhancer of rudimentary homolog yes no 2 0.021802 82.774 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12342 159 12670;12671 44639;44640 67207;67208 67208 2 TYAFSENPLPTVEIAIR TIAYSIRGQLSWHQKTYAFSENPLPTVEIA AFSENPLPTVEIAIRNTGDADQWCPLLETL K T Y I R N 2 1 1 0 0 0 2 0 0 2 1 0 0 1 2 1 2 0 1 1 0 0 17 0 1919.9993 Q9H836;G5E975;Q12824;B5MCL5 Q9H836 334 350 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 yes no 2 0.0008122 60.157 1 0.78343 1.0846 NaN 1 Median 0.78343 1.0846 NaN 1 0 Median NaN NaN NaN 0 0 Median 11220000 6287500 4932900 11220000 6287500 4932900 0 0 0 12343 1081 12672 44641 67209;67210 67210 2 TYAICGAIR AEVDKVTGRFNGQFKTYAICGAIRRMGESD FNGQFKTYAICGAIRRMGESDDSILRLAKA K T Y I R R 2 1 0 0 1 0 0 1 0 2 0 0 0 0 0 0 1 0 1 0 0 0 9 0 1023.5172 Q8WVC2;Q6FGH5;Q9BYK1;P63220 Q8WVC2 52 60 RPS21 40S ribosomal protein S21 yes no 2 0.0011462 103.75 4 0.92452 1.253 10.36 4 Median 0.92452 1.253 10.36 4 0 Median NaN NaN NaN 0 0 Median 177110000 84257000 92850000 177110000 84257000 92850000 0 0 0 12344 1419 12673 44642;44643;44644;44645 67211;67212;67213;67214;67215;67216;67217 67217 7 TYALFIGDTVLVDEDGPATVLTSVKK FSDLTNKEGKKPEEKTYALFIGDTVLVDED VDEDGPATVLTSVKKKVKNVGIFLKNEDEE K T Y K K K 2 0 0 3 0 0 1 2 0 1 3 2 0 1 1 1 4 0 1 4 0 0 26 1 2751.4582 Q9Y5B9 Q9Y5B9 398 423 SUPT16H FACT complex subunit SPT16 yes yes 3 6.0848E-08 88.976 2 0.95936 1.1944 NaN 1 Median 0.95936 1.1944 NaN 1 0 Median NaN NaN NaN 0 0 Median 3775800 1388300 2387500 3775800 1388300 2387500 0 0 0 12345 1829 12674 44646;44647 67218;67219 67218 2 TYDAASYICEAAFDEVK SDPSRTHQALGILSKTYDAASYICEAAFDE DAASYICEAAFDEVKMAAHTMGNATVGRRY K T Y V K M 4 0 0 2 1 0 2 0 0 1 0 1 0 1 0 1 1 0 2 1 0 0 17 0 1951.851 P42166 P42166 621 637 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2 2.3164E-18 153.39 3 0.65394 0.82695 12.976 2 Median 0.65394 0.82695 12.976 2 0 Median NaN NaN NaN 0 0 Median 16786000 11434000 5351700 16786000 11434000 5351700 0 0 0 12346 1335 12675 44648;44649;44650 67220;67221;67222;67223;67224;67225 67222 6 TYDPSGDSTLPTCSK ALAKTEKYEHKSEVKTYDPSGDSTLPTCSK TYDPSGDSTLPTCSKKRKIEQVDKEDEITE K T Y S K K 0 0 0 2 1 0 0 1 0 0 1 1 0 0 2 3 3 0 1 0 0 0 15 0 1627.7036 Q9Y2X3;B3KN82 Q9Y2X3 427 441 NOP58 Nucleolar protein 58 yes no 2 6.4496E-28 187.78 3 2 0.67205 0.84541 22.816 5 Median 0.72221 0.90593 4.075 3 0 Plateau 0.374 0.58869 6.4992 2 0 Median 202780000 122850000 79928000 140970000 79089000 61885000 61808000 43766000 18043000 12347 1810 12676 44651;44652;44653;44654;44655 67226;67227;67228;67229;67230;67231;67232;67233;67234;67235;67236 67227 11 TYELLNCDK VVLEGASLETVKVGKTYELLNCDKHKSILL TVKVGKTYELLNCDKHKSILLKNGRDPGEA K T Y D K H 0 0 1 1 1 0 1 0 0 0 2 1 0 0 0 0 1 0 1 0 0 0 9 0 1154.5278 A8K6D2;Q92979;B4DQC7;V9GYP5;A0A087WWQ2;B4DP65;A0A087WVM7;A0A0U3B3H7 A8K6D2 60 68 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 2 0.0011078 112.84 2 1.0832 1.3572 1.7558 2 Median 1.0832 1.3572 1.7558 2 0 Median NaN NaN NaN 0 0 Median 27643000 13393000 14249000 27643000 13393000 14249000 0 0 0 12348 623 12677 44656;44657 67237;67238;67239;67240 67237 4 TYEVSLR TICFVYQDPQGRHVKTYEVSLREKEFNKGP DPQGRHVKTYEVSLREKEFNKGPWKQENVE K T Y L R E 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 1 1 0 1 1 0 0 7 0 866.44978 Q16531;F5GY55;B7Z2A1;F5H2L3 Q16531 192 198 DDB1 DNA damage-binding protein 1 yes no 2 0.024817 102.77 3 2 0.82132 1.1382 8.4769 5 Median 0.82132 1.1275 4.5107 3 0 Median 0.8176 1.2732 1.5077 2 0 Median 155150000 86152000 68997000 106850000 61252000 45599000 48298000 24900000 23397000 12349 1520 12678 44658;44659;44660;44661;44662 67241;67242;67243;67244;67245;67246 67241 6 TYFEDNPR LKEIKEELLHSEKLKTYFEDNPRDLQLLRH LHSEKLKTYFEDNPRDLQLLRHDLPLHPAV K T Y P R D 0 1 1 1 0 0 1 0 0 0 0 0 0 1 1 0 1 0 1 0 0 0 8 0 1040.4563 Q9NY93;Q53HB9;H7BZN7 Q9NY93 462 469 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 0.0083292 78.324 1 0.78616 1.05 NaN 1 Median 0.78616 1.05 NaN 1 0 Median NaN NaN NaN 0 0 Median 24077000 14158000 9918900 24077000 14158000 9918900 0 0 0 12350 1768 12679 44663 67247;67248 67248 2 TYGEPESAGPSR GYNDDYYEESYFTTRTYGEPESAGPSRAVR TTRTYGEPESAGPSRAVRQSVTSFPDADAF R T Y S R A 1 1 0 0 0 0 2 2 0 0 0 0 0 0 2 2 1 0 1 0 0 0 12 0 1249.5575 P50402;Q5HY57 P50402 104 115 EMD Emerin yes no 2 2.0427E-07 104.43 3 2 0.41485 0.54882 44.38 5 Median 0.38416 0.51235 13.176 3 0 Median 0.74023 1.0859 6.1116 2 0 Median 75725000 51187000 24538000 48006000 35378000 12627000 27719000 15808000 11911000 12351 1357 12680 44664;44665;44666;44667;44668 67249;67250;67251;67252;67253;67254;67255;67256 67252 8 TYHYHCGVQDK QPGATIGCEIKACVKTYHYHCGVQDKAKYI ACVKTYHYHCGVQDKAKYIENMSRGIYKLY K T Y D K A 0 0 0 1 1 1 0 1 2 0 0 1 0 0 0 0 1 0 2 1 0 0 11 0 1406.6037 Q8IWS0;A0A0D9SGE8;Q5JRC6;B4E138 Q8IWS0 300 310 PHF6 PHD finger protein 6 yes no 2;3 0.0033623 60.102 4 0.99635 1.273 8.6407 4 Median 0.99635 1.273 8.6407 4 0 Median NaN NaN NaN 0 0 Median 20773000 10456000 10317000 20773000 10456000 10317000 0 0 0 12352 1625 12681 44669;44670;44671;44672 67257;67258;67259;67260 67260 4 TYIQLLIR LGLQTKEEVSIEVLKTYIQLLIREKHTNLI VSIEVLKTYIQLLIREKHTNLIAFYTCHLP K T Y I R E 0 1 0 0 0 1 0 0 0 2 2 0 0 0 0 0 1 0 1 0 0 0 8 0 1018.6175 P57740;B3KMK0 P57740 575 582 NUP107 Nuclear pore complex protein Nup107 yes no 2 0.024597 55.441 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 652300 652300 0 652300 652300 0 0 0 0 12353 1384 12682 44673 67261 67261 1 TYLTITDTQLVNSLLEK GDTPAPRRAVLETIRTYLTITDTQLVNSLL LTITDTQLVNSLLEKASEKVLDPASSDFTR R T Y E K A 0 0 1 1 0 1 1 0 0 1 4 1 0 0 0 1 4 0 1 1 0 0 17 0 1951.0514 B3KMR5;Q5JTH9;B3KY97 B3KMR5 719 735 RRP12 RRP12-like protein yes no 2 1.3952E-50 241.51 4 0.87173 1.1089 9.5777 4 Median 0.87173 1.1089 9.5777 4 0 Median NaN NaN NaN 0 0 Median 72224000 37064000 35160000 72224000 37064000 35160000 0 0 0 12354 756 12683 44674;44675;44676;44677 67262;67263;67264;67265;67266;67267;67268;67269;67270;67271 67267 10 TYNASITLQQQLK HLQDLMEGLTAKVFRTYNASITLQQQLKEL FRTYNASITLQQQLKELTAPDENIPAKILS R T Y L K E 1 0 1 0 0 3 0 0 0 1 2 1 0 0 0 1 2 0 1 0 0 0 13 0 1506.8042 P11387;Q9BVT2 P11387 591 603 TOP1 DNA topoisomerase 1 yes no 2 7.535E-65 252.16 4 2 0.79679 1.3629 17.949 6 Linear 0.78664 1.031 8.4223 4 0 Median 0.87445 1.3769 0.81379 2 0 Median 1507900000 823080000 684820000 761860000 431260000 330610000 746030000 391820000 354210000 12355 1255 12684 44678;44679;44680;44681;44682;44683 67272;67273;67274;67275;67276;67277;67278;67279;67280;67281;67282;67283;67284;67285;67286;67287;67288;67289;67290;67291;67292;67293;67294;67295 67273 24 TYNEPGSQVFK HAMAKDIDLLAKNAKTYNEPGSQVFKDANS KNAKTYNEPGSQVFKDANSIKKIFYMKKAE K T Y F K D 0 0 1 0 0 1 1 1 0 0 0 1 0 1 1 1 1 0 1 1 0 0 11 0 1268.6037 Q86U86;E7EVG2;H0Y5B5 Q86U86 261 271 PBRM1 Protein polybromo-1 yes no 2 0.017877 51.445 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4143200 4143200 0 4143200 4143200 0 0 0 0 12356 1620 12685 44684 67296 67296 1 TYQELLVNQNPIAQPLASR PDGPEAQAEACSGERTYQELLVNQNPIAQP LLVNQNPIAQPLASRRLTRKLYKCIKKAVK R T Y S R R 2 1 2 0 0 3 1 0 0 1 3 0 0 0 2 1 1 0 1 1 0 0 19 0 2154.1433 D6RC52;D6RCB9;Q9NX24;J3QSY4 D6RC52 23 41 NHP2 H/ACA ribonucleoprotein complex subunit 2 yes no 2 8.2677E-84 238.64 6 2 0.66272 0.93736 7.7538 6 Median 0.69668 0.95319 9.3559 4 0 Median 0.57373 0.92263 3.521 2 0 Median 250330000 148970000 101360000 156310000 89509000 66805000 94019000 59459000 34559000 12357 990 12686 44685;44686;44687;44688;44689;44690;44691;44692 67297;67298;67299;67300;67301;67302;67303;67304;67305;67306;67307;67308;67309;67310;67311 67300 15 TYQNLVK LLPRRTDWTGKEHPRTYQNLVKYYRHLAPD WTGKEHPRTYQNLVKYYRHLAPDHLLQICH R T Y V K Y 0 0 1 0 0 1 0 0 0 0 1 1 0 0 0 0 1 0 1 1 0 0 7 0 864.47052 Q8WWQ0 Q8WWQ0 59 65 PHIP PH-interacting protein yes yes 2 0.035155 56.51 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12358 1668 12687 44693 67312 67312 1 TYSLGSALRPSTSR SRPSSSRSYVTTSTRTYSLGSALRPSTSRS RTYSLGSALRPSTSRSLYASSPGGVYATRS R T Y S R S 1 2 0 0 0 0 0 1 0 0 2 0 0 0 1 4 2 0 1 0 0 0 14 1 1494.7791 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;A0A1B0GUA0;A0A1B0GTT5;A0A1B0GVG8 V9HWE1 37 50 HEL113;VIM Vimentin yes no 2;3 3.2108E-05 63.76 3 2 0.75965 0.99371 4.2045 5 Linear 0.75297 0.99371 4.0873 3 0 Plateau 0.65672 0.99714 5.7752 2 0 Median 671260000 379980000 291280000 624640000 353130000 271520000 46615000 26855000 19761000 12359 1245 12688 44694;44695;44696;44697;44698 67313;67314;67315;67316;67317;67318;67319;67320;67321;67322 67313 10 TYSVVPMTSR LAQDSACSQRALQLRTYSVVPMTSRLGLIE ALQLRTYSVVPMTSRLGLIEWLENTVTLKD R T Y S R L 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 2 2 0 1 2 0 0 10 0 1139.5645 P78527 P78527 3790 3799 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0012565 71.692 1 0.71618 0.97979 NaN 1 Median NaN NaN NaN 0 0 Median 0.71618 0.97979 NaN 1 0 Median 5721800 3146900 2574900 0 0 0 5721800 3146900 2574900 12360 1427 12689 44699 67323 67323 637 1 TYSYLTPDLWK TLGNFAKATFDAISKTYSYLTPDLWKETVF AISKTYSYLTPDLWKETVFTKSPYQEFTDH K T Y W K E 0 0 0 1 0 0 0 0 0 0 2 1 0 0 1 1 2 1 2 0 0 0 11 0 1385.6867 P15880;Q8J014;Q8N5L9;Q6IPX5;Q3KQT6;H0YEN5;E9PQD7;Q9BSW5;O60249;A4D0Y7;Q8NI62 P15880 247 257 RPS2;rps2;LOC392781;OK/KNS-cl.6 40S ribosomal protein S2 no no 2 0.00058017 78.939 2 0.49288 0.75071 3.4647 2 Median NaN NaN NaN 0 0 Median 0.49288 0.75071 3.4647 2 0 Median 39365000 24729000 14636000 0 0 0 39365000 24729000 14636000 12361 1269;1657 12690 44700;44701 67324;67325;67326 67326 3 TYTDELTPIESAVSVFK YNLLSLRFNSRIRVKTYTDELTPIESAVSV TDELTPIESAVSVFKAANWYEREIWDMFGV K T Y F K A 1 0 0 1 0 0 2 0 0 1 1 1 0 1 1 2 3 0 1 2 0 0 17 0 1898.9513 Q9UF24;Q53FM7;O75489 Q9UF24 71 87 DKFZp586K0821;NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes no 2 2.4735E-05 63.727 1 0.42998 0.52375 NaN 1 Median 0.42998 0.52375 NaN 1 0 Median NaN NaN NaN 0 0 Median 3456000 2359800 1096200 3456000 2359800 1096200 0 0 0 12362 1202 12691 44702 67327 67327 1 TYTETVNHHYLLFQDTDLGSFHDLLR HSSASSGVPNPPKARTYTETVNHHYLLFQD LFQDTDLGSFHDLLRREPMLRMQEGEGHSQ R T Y L R R 0 1 1 3 0 1 1 1 3 0 5 0 0 2 0 1 4 0 2 1 0 0 26 0 3134.5098 Q8WUA4;Q53SY8;H0Y4Q6;H7C318 Q8WUA4 786 811 GTF3C2 General transcription factor 3C polypeptide 2 yes no 4 0.044714 13.022 1 0.55246 0.7431 NaN 1 Median 0.55246 0.7431 NaN 1 0 Median NaN NaN NaN 0 0 Median 7702800 5417200 2285600 7702800 5417200 2285600 0 0 0 12363 1663 12692 44703 67328 67328 1 TYTQLVR TPEKWDIITRKGGERTYTQLVRLIILDEIH ITRKGGERTYTQLVRLIILDEIHLLHDDRG R T Y V R L 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 2 0 1 1 0 0 7 0 879.48142 O75643;A4FU77;Q9H8B9 O75643 604 610 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.020089 103.29 3 0.56589 0.75326 10.536 3 Median 0.56589 0.75326 10.536 3 0 Median NaN NaN NaN 0 0 Median 33651000 21709000 11942000 33651000 21709000 11942000 0 0 0 12364 1206 12693 44704;44705;44706 67329;67330;67331;67332 67332 4 TYVVTGNMGSNDK VLNVIEGPVFRPGSKTYVVTGNMGSNDKVG SKTYVVTGNMGSNDKVGDFVATDLDTGRPS K T Y D K V 0 0 2 1 0 0 0 2 0 0 0 1 1 0 0 1 2 0 1 2 0 0 13 0 1384.6293 Q02413 Q02413 391 403 DSG1 Desmoglein-1 yes yes 2 0.03017 42.395 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 601620 601620 0 0 0 0 601620 601620 0 12365 1435 12694 44707 67333 67333 1 VAAAASCLSQK LTLIDYDMVHYHPSKVAAAASCLSQKVLGQ HPSKVAAAASCLSQKVLGQGKWNLKQQYYT K V A Q K V 4 0 0 0 1 1 0 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 11 0 1104.5597 H1UBN3;Q5U0M0;Q53HG9;O95067;Q7Z4Z4 H1UBN3 308 318 CCNB2V;CCNB2 G2/mitotic-specific cyclin-B2 yes no 2 0.0010255 73.985 2 0.77936 0.98478 4.0773 2 Median 0.77936 0.98478 4.0773 2 0 Median NaN NaN NaN 0 0 Median 4934600 2512400 2422200 4934600 2512400 2422200 0 0 0 12366 1104 12695 44708;44709 67334;67335 67335 2 VAAADGHYDVLFIGTDVGTVLK QVGANYTFTQIAADRVAAADGHYDVLFIGT YDVLFIGTDVGTVLKVISVPKGSRPSAEGL R V A L K V 3 0 0 3 0 0 0 3 1 1 2 1 0 1 0 0 2 0 1 4 0 0 22 0 2260.1739 A0A0C4DGV8;A0A1S5UZH6;Q13214;B4DEK9;Q59FY7;Q6PI51;Q8NAS4 A0A0C4DGV8 443 464 SEMA3B Semaphorin-3B yes no 3 0.023183 15.506 1 0.25212 0.32546 NaN 1 Median 0.25212 0.32546 NaN 1 0 Median NaN NaN NaN 0 0 Median 4662800 3620500 1042400 4662800 3620500 1042400 0 0 0 12367 430 12696 44710 67336 67336 1 VAADLQLSTPQK QPVDQPTTESCSTLKVAADLQLSTPQKASQ TLKVAADLQLSTPQKASQHQVLFLLSDVAH K V A Q K A 2 0 0 1 0 2 0 0 0 0 2 1 0 0 1 1 1 0 0 1 0 0 12 0 1269.6929 A7E234;Q9H582;Q569I6;Q9H835 A7E234 157 168 ZNF644 Zinc finger protein 644 yes no 2 0.0020506 66.595 1 2 0.5539 0.71368 NaN 1 Median 0.5539 0.71368 NaN 1 0 Median NaN NaN NaN 0 0 Median 5047500 4279800 767720 1835600 1067900 767720 3211900 3211900 0 12368 573 12697 44711;44712;44713 67337;67338;67339 67339 3 VAAGTLDASTK SEILKQKDTEPTNFKVAAGTLDASTKIYAV TNFKVAAGTLDASTKIYAVRVDAVHADVYR K V A T K I 3 0 0 1 0 0 0 1 0 0 1 1 0 0 0 1 2 0 0 1 0 0 11 0 1032.5451 Q15003;B4DRG7;E9PHA2;A8K4T8;C9J470 Q15003 153 163 NCAPH Condensin complex subunit 2 yes no 2 7.9363E-12 140.75 4 2 0.69573 0.87425 1.7067 5 Linear 0.70216 0.88015 0.82172 3 0 Plateau 0.5837 0.87164 3.2019 2 0 Median 213680000 132030000 81656000 198310000 122430000 75887000 15371000 9601500 5769100 12369 1500 12698 44714;44715;44716;44717;44718;44719 67340;67341;67342;67343;67344;67345;67346 67342 7 VAALAEEK QKGAREAEVLLLQQRVAALAEEKSRAQEKV VLLLQQRVAALAEEKSRAQEKVTEKEVVKL R V A E K S 3 0 0 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 8 0 829.45453 K7EQ71;K7EKI8;O60437 K7EQ71 459 466 PPL Periplakin yes no 2 0.017868 60.788 1 0.97684 1.2677 NaN 1 Median 0.97684 1.2677 NaN 1 0 Median NaN NaN NaN 0 0 Median 94413000 51989000 42425000 94413000 51989000 42425000 0 0 0 12370 1149 12699 44720 67347;67348 67347 2 VAALTFEANVLAELEK VSSLTGENVREFFFRVAALTFEANVLAELE AALTFEANVLAELEKSGARRIGDVVRINSD R V A E K S 4 0 1 0 0 0 3 0 0 0 3 1 0 1 0 0 1 0 0 2 0 0 16 0 1716.9298 C9JY26;Q6NXT3;A0A024QZ68;Q9BZG1;B4DNC0;J3QLC6 C9JY26 212 227 RAB34 Ras-related protein Rab-34 yes no 2 1.0201E-06 76.326 3 0.8022 1.0478 8.0321 3 Median 0.8022 1.0478 8.0321 3 0 Median NaN NaN NaN 0 0 Median 11045000 6628900 4416300 11045000 6628900 4416300 0 0 0 12371 7 12700 44721;44722;44723 67349;67350;67351 67350 2 VAAPDVVVPTLDTVR PWQAKVPQIEVETHKVAAPDVVVPTLDTVR VAAPDVVVPTLDTVRHEALLYTWLAEHKPL K V A V R H 2 1 0 2 0 0 0 0 0 0 1 0 0 0 2 0 2 0 0 5 0 0 15 0 1550.8668 Q14204 Q14204 2562 2576 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00044357 96.604 1 0.52362 0.74161 NaN 1 Median 0.52362 0.74161 NaN 1 0 Median NaN NaN NaN 0 0 Median 2586600 1550500 1036200 2586600 1550500 1036200 0 0 0 12372 1483 12701 44724 67352 67352 1 VAAPEIVSGVSGESEQK LAHAIAGELDLPILKVAAPEIVSGVSGESE APEIVSGVSGESEQKLRELFEQAVSNAPCI K V A Q K L 2 0 0 0 0 1 3 2 0 1 0 1 0 0 1 3 0 0 0 3 0 0 17 0 1685.8472 B4DLM8;O15381;B4DQJ4 B4DLM8 329 345 NVL Nuclear valosin-containing protein-like yes no 2 0.00029654 77.894 4 1 0.85885 1.1209 92.116 2 Median 0.4567 0.58439 NaN 1 0 Median 1.6151 2.1501 NaN 1 0 Median 11735000 7784100 3950500 8697900 6676000 2021900 3036700 1108100 1928600 12373 827 12702 44725;44726;44727;44728;44729 67353;67354;67355;67356;67357;67358 67354 6 VAASEEQEFAEGFVK LVTTTPTSSQFLYPKVAASEEQEFAEGFVK VAASEEQEFAEGFVKALEDLHKQNQLGAGA K V A V K A 3 0 0 0 0 1 4 1 0 0 0 1 0 2 0 1 0 0 0 2 0 0 15 0 1639.773 P17535 P17535 128 142 JUND Transcription factor jun-D yes yes 2 2.3877E-38 201.09 4 2 0.70419 0.96246 3.9217 4 Median 0.77346 0.9714 0.7529 2 0 Median 0.65019 0.92656 4.8204 2 0 Median 26296000 17185000 9111300 15158000 9931500 5226500 11138000 7253500 3884800 12374 1276 12703 44730;44731;44732;44733;44734;44735 67359;67360;67361;67362;67363;67364;67365;67366 67359 8 VAASPEDIK WKPGYLDRALQVMEKVAASPEDIKLCREAL LQVMEKVAASPEDIKLCREALDVLGAVLKA K V A I K L 2 0 0 1 0 0 1 0 0 1 0 1 0 0 1 1 0 0 0 1 0 0 9 0 928.48656 Q6PKB3;G5EA06;B4DT94;A0A024RAJ1;Q92552;Q8N6F2;B4DKI9;D6RH20 Q6PKB3 74 82 MRPS27 28S ribosomal protein S27, mitochondrial yes no 2 0.021105 55.112 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4321800 4321800 0 4321800 4321800 0 0 0 0 12375 244 12704 44736 67367 67367 1 VAASTFSSDSK MKTKELIGSMKINGRVAASTFSSDSKKVYA INGRVAASTFSSDSKKVYASSGDGEVYVWD R V A S K K 2 0 0 1 0 0 0 0 0 0 0 1 0 1 0 4 1 0 0 1 0 0 11 0 1098.5193 Q9Y5J1;B2RAX6;J3KSR7;J3QR85 Q9Y5J1 385 395 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2 0.0084052 51.268 1 0.87688 1.2088 NaN 1 Median NaN NaN NaN 0 0 Median 0.87688 1.2088 NaN 1 0 Median 5279800 2357100 2922700 0 0 0 5279800 2357100 2922700 12376 1830 12705 44737 67368 67368 1 VAATSVITIVK RGPLAAGLGPLVPGKVAATSVITIVKSKTD VPGKVAATSVITIVKSKTDARS________ K V A V K S 2 0 0 0 0 0 0 0 0 2 0 1 0 0 0 1 2 0 0 3 0 0 11 0 1100.6805 A0A024R8X1;O15525 A0A024R8X1 145 155 hCG_1991559;MAFG Transcription factor MafG yes no 2 3.2181E-06 120.99 4 2 1.2165 1.7656 14.901 3 Plateau 1.1748 1.4387 NaN 1 0 Median 1.2127 1.8424 6.0213 2 0 Median 60111000 29613000 30499000 23826000 13084000 10742000 36285000 16529000 19756000 12377 207 12706 44738;44739;44740;44741;44742;44743 67369;67370;67371;67372;67373;67374;67375;67376;67377 67373 9 VACCPLER KPAVTQLLWERATEKVACCPLERCSSVMLL WERATEKVACCPLERCSSVMLLGMMARGKP K V A E R C 1 1 0 0 2 0 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 8 0 1003.4579 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 764 771 NCAPD2 Condensin complex subunit 1 yes no 2 0.0093261 108.09 4 2 0.41659 0.5743 45.273 4 Median 0.64935 0.87497 13.672 2 0 Median 0.28505 0.40461 3.6593 2 0 Median 81405000 43936000 37469000 64011000 30646000 33365000 17394000 13290000 4104400 12378 757 12707 44744;44745;44746;44747;44748;44749 67378;67379;67380;67381;67382;67383 67378 6 VACIGAWHPAR HTKKLPRKTHRGLRKVACIGAWHPARVAFS GLRKVACIGAWHPARVAFSVARAGQKGYHH K V A A R V 3 1 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 1 0 1 0 0 11 0 1236.6186 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;Q49AJ9;Q9BT63;H7C422;B5MCW2;B2R7Y3;Q92901 P39023 251 261 RPL3;rpl3;RPL3L 60S ribosomal protein L3;60S ribosomal protein L3-like yes no 2;3 0.00065515 59.245 3 0.58434 0.90588 10.657 3 Median NaN NaN NaN 0 0 Median 0.58434 0.90588 10.657 3 0 Median 58282000 37075000 21207000 0 0 0 58282000 37075000 21207000 12379 1330 12708 44750;44751;44752 67384;67385;67386;67387;67388;67389 67387 6 VADAKGDSESEEDEDLEVPVPSR RQSLGHPPPEPGPDRVADAKGDSESEEDED ESEEDEDLEVPVPSRFNRRVSVCAETYNPD R V A S R F 2 1 0 4 0 0 5 1 0 0 1 1 0 0 2 3 0 0 0 3 0 0 23 1 2472.114 A0A0S2Z472;A8KAH7;A0A024R2W3;P13861 A0A0S2Z472 71 93 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 3 0.0053768 63.376 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3051400 3051400 0 3051400 3051400 0 0 0 0 12380 94 12709 44753;44754 67390;67391 67391 2 VADEMDVMLGQEVGYSIR CTQPRRVAAMSVAQRVADEMDVMLGQEVGY EMDVMLGQEVGYSIRFEDCSSAKTILKYMT R V A I R F 1 1 0 2 0 1 2 2 0 1 1 0 2 0 0 1 0 0 1 3 0 0 18 0 2010.9391 O43143;B4E0S6 O43143 205 222 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 2 0.00014825 51.092 2 0.75907 1.0936 8.369 2 Median NaN NaN NaN 0 0 Median 0.75907 1.0936 8.369 2 0 Median 25459000 15368000 10090000 0 0 0 25459000 15368000 10090000 12381 1180 12710 44755;44756 67392;67393 67393 430;431 2 VADLTEQYNEQYGAVR EGHWSKECPIDRSGRVADLTEQYNEQYGAV ADLTEQYNEQYGAVRTPYTMSYGDSLYYNN R V A V R T 2 1 1 1 0 2 2 1 0 0 1 0 0 0 0 0 1 0 2 2 0 0 16 0 1854.8748 A8K9U0;Q9BWF3 A8K9U0 183 198 RBM4 RNA-binding protein 4 yes no 2 1.0484E-42 202.05 4 2 0.41722 0.57665 14.81 2 Median 0.41722 0.57665 14.81 2 0 Median NaN NaN NaN 0 0 Median 15869000 6976900 8892000 8548500 6976900 1571600 7320400 0 7320400 12382 650 12711 44757;44758;44759;44760;44761;44762 67394;67395;67396;67397;67398;67399;67400;67401;67402;67403 67395 10 VADNAQQQYVR QSTLEASLELRGLARVADNAQQQYVRSRPA GLARVADNAQQQYVRSRPAPSPESIKRAKE R V A V R S 2 1 1 1 0 3 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 11 0 1290.6317 Q8TDD1 Q8TDD1 511 521 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 4.3315E-58 223.32 4 2 0.77342 1.0395 9.5902 6 Median 0.81599 1.1868 5.9245 4 0 Linear 0.61412 0.93318 4.4076 2 0 Median 120540000 72688000 47851000 79125000 46734000 32391000 41414000 25954000 15460000 12383 1658 12712 44763;44764;44765;44766;44767;44768 67404;67405;67406;67407;67408;67409;67410;67411;67412;67413;67414 67409 11 VADPVVTFCETVVETSSLK VMHDLRKMYSEIDIKVADPVVTFCETVVET VVTFCETVVETSSLKCFAETPNKKNKITMI K V A L K C 1 0 0 1 1 0 2 0 0 0 1 1 0 1 1 2 3 0 0 5 0 0 19 0 2080.0398 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 606 624 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 1.5793E-24 163.62 4 0.62816 0.78261 7.6106 4 Median 0.62816 0.78261 7.6106 4 0 Median NaN NaN NaN 0 0 Median 53603000 32474000 21129000 53603000 32474000 21129000 0 0 0 12384 654 12713 44769;44770;44771;44772 67415;67416;67417;67418;67419;67420;67421;67422 67416 8 VAEAAIQIFR TYESLLQCLRMEDDKVAEAAIQIFRNTGHK MEDDKVAEAAIQIFRNTGHKIETDLPQIRS K V A F R N 3 1 0 0 0 1 1 0 0 2 0 0 0 1 0 0 0 0 0 1 0 0 10 0 1116.6291 G1UI16;Q29RF7 G1UI16 694 703 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 0.0023148 71.501 2 2 0.76024 0.98352 39.488 4 Median 0.85512 1.1449 62.252 2 0 Median 0.76024 0.98352 23.91 2 0 Median 46488000 25159000 21330000 37875000 20160000 17714000 8613400 4998000 3615400 12385 1076 12714 44773;44774;44775;44776 67423;67424;67425;67426 67423 4 VAEDEAEAAAAAK MSLAGAEKNGLVKIKVAEDEAEAAAAAKFT IKVAEDEAEAAAAAKFTGLSKEELLFWLGW K V A A K F 7 0 0 1 0 0 3 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 13 0 1244.5885 B4E2Z3;F5GZS6;J3KPF3;P08195;A0A024R599;H0YFS2;F5H0E2;F5H867;B4E3E4 B4E2Z3 47 59 SLC3A2 4F2 cell-surface antigen heavy chain yes no 2 0.00034397 112.15 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16688000 0 16688000 0 0 0 16688000 0 16688000 12386 889 12715 44777;44778 67427;67428 67427 2 VAEEHAPSIVFIDEIDAIGTK KYLGDGPKLVRELFRVAEEHAPSIVFIDEI PSIVFIDEIDAIGTKRYDSNSGGEREIQRT R V A T K R 3 0 0 2 0 0 3 1 1 4 0 1 0 1 1 1 1 0 0 2 0 0 21 0 2253.1529 Q53XL8;Q53HB3;P62191 Q53XL8 273 293 PSMC1 26S protease regulatory subunit 4 yes no 3 1.1242E-12 96.718 4 2 0.39372 0.4951 100.4 5 Median 0.3924 0.49012 4.937 4 0 Median 3.1743 4.6919 NaN 1 0 Median 71230000 42193000 29037000 57480000 39855000 17626000 13749000 2338300 11411000 12387 1398 12716 44779;44780;44781;44782;44783;44784 67429;67430;67431;67432;67433;67434;67435;67436;67437;67438;67439 67434 11 VAEELALEQAK GAYGASVSDEELKRRVAEELALEQAKKESE LKRRVAEELALEQAKKESEDQKRLKQAKEL R V A A K K 3 0 0 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 11 0 1199.6398 A4D1N4;C9JRZ6;Q9NX63;B7Z1X9;F8WAR4 A4D1N4 66 76 CHCHD3 MICOS complex subunit MIC19 yes no 2 3.4122E-22 179.37 5 2 0.43852 0.54444 86.123 5 Median 0.43492 0.5442 1.2556 3 0 Plateau 1.7343 2.6024 4.0076 2 0 Median 67597000 36131000 31466000 45914000 28476000 17437000 21683000 7654400 14029000 12388 549 12717 44785;44786;44787;44788;44789;44790;44791 67440;67441;67442;67443;67444;67445;67446;67447;67448;67449;67450;67451;67452 67441 13 VAEGQVTCPYLPPFPAR AEYLHWLLTNIPGNRVAEGQVTCPYLPPFP EGQVTCPYLPPFPARGSGIHRLAFLLFKQD R V A A R G 2 1 0 0 1 1 1 1 0 0 1 0 0 1 4 0 1 0 1 2 0 0 17 0 1900.9506 B2R894;Q96DV4 B2R894 211 227 MRPL38 39S ribosomal protein L38, mitochondrial yes no 2 0.034095 52.495 1 0.43069 0.59717 NaN 1 Median 0.43069 0.59717 NaN 1 0 Median NaN NaN NaN 0 0 Median 1843000 1381900 461150 1843000 1381900 461150 0 0 0 12389 715 12718 44792 67453 67453 1 VAEITELILK LKDQVLRCSKIAGVKVAEITELILKALEND IAGVKVAEITELILKALENDQKVRKEGGKF K V A L K A 1 0 0 0 0 0 2 0 0 2 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1127.6802 B4DXG8;D6RIY6;A5PLM5;Q06265;D6R905;H0Y9L5 B4DXG8 258 267 EXOSC9 Exosome complex component RRP45 yes no 2 1.5748E-08 156.75 2 2 0.52354 0.71885 26.101 4 Median 0.69329 0.88111 8.4544 2 0 Median 0.39163 0.57383 11.537 2 0 Median 27210000 16819000 10391000 13618000 7501900 6116300 13592000 9317000 4274900 12390 559 12719 44793;44794;44795;44796 67454;67455;67456;67457;67458 67454 5 VAELSEEELPPEMVER V A E R 1 1 0 0 0 0 6 0 0 0 2 0 1 0 2 1 0 0 0 2 0 0 16 0 1855.8873 REV__D3DVC4 yes no 2 0.026773 83.081 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 12391 1851 12720 44797 67459 67459 1 VAFDPEQK KTDKSILVSPTGPSRVAFDPEQKPLHGVLK SPTGPSRVAFDPEQKPLHGVLKTPTSSPAS R V A Q K P 1 0 0 1 0 1 1 0 0 0 0 1 0 1 1 0 0 0 0 1 0 0 8 0 932.46035 Q14684 Q14684 713 720 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 0.013568 67.032 1 1 0.78308 1.0556 9.2336 2 Median 0.80489 0.98892 NaN 1 0 Median 0.76186 1.1269 NaN 1 0 Median 28540000 14134000 14406000 18619000 8939900 9679400 9920500 5194400 4726200 12392 1493 12721 44798;44799 67460;67461;67462 67461 3 VAFERGEEPGK VTQPRRISAVSVAERVAFERGEEPGKSCGY VAERVAFERGEEPGKSCGYSVRFESILPRP R V A G K S 1 1 0 0 0 0 3 2 0 0 0 1 0 1 1 0 0 0 0 1 0 0 11 1 1217.6041 Q08211;Q58F26;Q6PJK6 Q08211 457 467 DHX9 ATP-dependent RNA helicase A yes no 2;3 0.00091974 118.03 4 0.66397 0.87603 6.1418 4 Median 0.66397 0.87603 6.1418 4 0 Median NaN NaN NaN 0 0 Median 253650000 153200000 100440000 253650000 153200000 100440000 0 0 0 12393 1448 12722 44800;44801;44802;44803 67463;67464;67465;67466;67467 67467 5 VAFHPARPFLLVASQR RSQSPFRRSHGQVQRVAFHPARPFLLVASQ AFHPARPFLLVASQRSVRLYHLLRQELTKK R V A Q R S 3 2 0 0 0 1 0 0 1 0 2 0 0 2 2 1 0 0 0 2 0 0 16 1 1808.021 B2RDN4;Q14137;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 B2RDN4 585 600 BOP1 Ribosome biogenesis protein BOP1 yes no 3;4 0.001666 36.638 1 3 0.70323 1.0607 4.7175 4 Median 0.81914 1.11 NaN 1 0 Median 0.66509 1.0369 4.153 3 0 Median 106240000 60161000 46083000 36336000 18574000 17761000 69909000 41586000 28322000 12394 738 12723 44804;44805;44806;44807 67468;67469;67470;67471;67472;67473 67468 6 VAFQFPTK TPRRSRSRRSSIGLRVAFQFPTKKLANKPD RSSIGLRVAFQFPTKKLANKPDKNSSSEQL R V A T K K 1 0 0 0 0 1 0 0 0 0 0 1 0 2 1 0 1 0 0 1 0 0 8 0 936.5069 A8K8X5;A0A024RA51;Q96GN5;C9IZR6 A8K8X5 144 151 CDCA7L Cell division cycle-associated 7-like protein yes no 2 0.033009 49.418 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3546300 3546300 0 0 0 0 3546300 3546300 0 12395 236 12724 44808;44809 67474;67475 67474 2 VAFSVAR GLRKVACIGAWHPARVAFSVARAGQKGYHH IGAWHPARVAFSVARAGQKGYHHRTEINKK R V A A R A 2 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 7 0 748.42317 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;B3KS36;Q49AJ9;Q9BT63;H7C422;B5MCW2 P39023 262 268 RPL3;rpl3 60S ribosomal protein L3 yes no 2 0.0011474 160.17 5 2 0.70351 1.0405 9.2496 6 Median 0.69969 0.96535 7.659 4 0 Median 0.7102 1.1367 3.5975 2 0 Median 1286400000 759390000 527030000 1202800000 711720000 491030000 83662000 47669000 35992000 12396 1330 12725 44810;44811;44812;44813;44814;44815;44816 67476;67477;67478;67479;67480;67481;67482;67483;67484;67485;67486;67487;67488;67489;67490;67491;67492 67478 17 VAFVDMLLK PALRYSLHDNSEKVRVAFVDMLLKIKAVRA NSEKVRVAFVDMLLKIKAVRAAKFWKICPM R V A L K I 1 0 0 1 0 0 0 0 0 0 2 1 1 1 0 0 0 0 0 2 0 0 9 0 1034.5834 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5 Q86XI2 477 485 NCAPG2 Condensin-2 complex subunit G2 yes no 2 0.0050878 73.26 2 0.8413 1.0531 24.574 2 Median 0.8413 1.0531 24.574 2 0 Median NaN NaN NaN 0 0 Median 5041200 3191200 1850000 5041200 3191200 1850000 0 0 0 12397 1621 12726 44817;44818 67493;67494;67495;67496 67494 4 VAFVIPPVVAAPPSLR TLCRCGESLQDVIDRVAFVIPPVVAAPPSL AFVIPPVVAAPPSLRVPRPPPLYSHRMRIL R V A L R V 3 1 0 0 0 0 0 0 0 1 1 0 0 1 4 1 0 0 0 4 0 0 16 0 1631.9763 Q96L91;A7E2D7 Q96L91 1831 1846 EP400 E1A-binding protein p400 yes no 2 0.00083774 47.288 2 0.6317 0.84347 1.5779 2 Median 0.6317 0.84347 1.5779 2 0 Median NaN NaN NaN 0 0 Median 9454400 5209300 4245100 9454400 5209300 4245100 0 0 0 12398 1692 12727 44819;44820 67497;67498 67497 2 VAGHPNIVINNAAGNFISPTER RDPDMVQNTVSELIKVAGHPNIVINNAAGN VINNAAGNFISPTERLSPNAWKTITDIVLN K V A E R L 3 1 4 0 0 0 1 2 1 3 0 0 0 1 2 1 1 0 0 2 0 0 22 0 2290.1818 A0A024R9D7;Q16698;E5RJD2;E5RJG7;Q7LDK6;E5RFV2 A0A024R9D7 134 155 DECR1;DECR 2,4-dienoyl-CoA reductase, mitochondrial yes no 3 4.4964E-06 87.963 4 1 0.48686 0.67256 9.208 3 Median 0.51495 0.71619 8.8901 2 0 Median 0.48686 0.63741 NaN 1 0 Median 20518000 13881000 6636900 16308000 11294000 5014100 4210400 2587600 1622800 12399 220 12728 44821;44822;44823;44824;44825 67499;67500;67501;67502;67503;67504;67505;67506 67501 8 VAGHSLGYGFVNYVTAK SSIGEVESAKLIRDKVAGHSLGYGFVNYVT GHSLGYGFVNYVTAKDAERAINTLNGLRLQ K V A A K D 2 0 1 0 0 0 0 3 1 0 1 1 0 1 0 1 1 0 2 3 0 0 17 0 1781.9101 Q15717;M0QZR9 Q15717 56 72 ELAVL1 ELAV-like protein 1 yes no 3 0.021324 21.445 1 0.40761 0.50652 NaN 1 Median 0.40761 0.50652 NaN 1 0 Median NaN NaN NaN 0 0 Median 16764000 11716000 5047700 16764000 11716000 5047700 0 0 0 12400 1515 12729 44826 67507 67507 1 VAGIESHSELQISR ECEKARQELQEAKEKVAGIESHSELQISRQ KVAGIESHSELQISRQQNELAELHANLARA K V A S R Q 1 1 0 0 0 1 2 1 1 2 1 0 0 0 0 3 0 0 0 1 0 0 14 0 1524.7896 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q4LE64;Q14980 Q4LE64 856 869 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2;3 4.8345E-14 155.47 5 2 0.72092 0.99646 44.788 7 Median 0.73325 1.0247 13.92 5 0 Median 0.29628 0.41199 0.77821 2 0 Median 61262000 36220000 25042000 49645000 27668000 21977000 11616000 8551500 3064700 12401 148;1499 12730 44827;44828;44829;44830;44831;44832;44833 67508;67509;67510;67511;67512;67513;67514;67515;67516;67517 67509 10 VAGLGTPSFAPYEANVDFEIR RLVAPARRLLEQGIRVAGLGTPSFAPYEAN PSFAPYEANVDFEIRFMVDTDIVGCNWLEL R V A I R F 3 1 1 1 0 0 2 2 0 1 1 0 0 2 2 1 1 0 1 2 0 0 21 0 2252.1113 A0A024R4F4;Q308M6;M0R2B7;P28340;M0QZR8;Q59FA0 A0A024R4F4 233 253 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 2 4.4579E-06 117.08 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1531400 1531400 0 1531400 1531400 0 0 0 0 12402 123 12731 44834 67518 67518 1 VAGQDGSVVQFK KEGVKTENNDHINLKVAGQDGSVVQFKIKR NLKVAGQDGSVVQFKIKRHTPLSKLMKAYC K V A F K I 1 0 0 1 0 2 0 2 0 0 0 1 0 1 0 1 0 0 0 3 0 0 12 0 1233.6354 A0A024R8S3;P61956;Q6EEV6 A0A024R8S3 22 33 SUMO2;SUMO4 Small ubiquitin-related modifier;Small ubiquitin-related modifier 2;Small ubiquitin-related modifier 4 no no 2 4.1394E-29 188.91 4 3 0.77868 1.0191 38.932 6 Median 0.75703 0.99347 3.3422 4 0 Median 1.3307 2.1049 1.0027 2 0 Median 880290000 477230000 403050000 647540000 373410000 274130000 232740000 103820000 128920000 12403 203 12732 44835;44836;44837;44838;44839;44840;44841 67519;67520;67521;67522;67523;67524;67525;67526;67527;67528;67529;67530;67531;67532 67524 14 VAGVVAPTLPR KLIDSWMGKGAAKLRVAGVVAPTLPREDLE AKLRVAGVVAPTLPREDLEKIIAHFLIQQY R V A P R E 2 1 0 0 0 0 0 1 0 0 1 0 0 0 2 0 1 0 0 3 0 0 11 0 1078.6499 A0A024RAV2;P46063 A0A024RAV2 529 539 RECQL ATP-dependent DNA helicase Q1 yes no 2 0.0035572 59.153 1 2 0.9375 1.2979 4.7765 2 Median NaN NaN NaN 0 0 Median 0.9375 1.2979 4.7765 2 0 Median 13433000 7869900 5563000 2065400 2065400 0 11367000 5804500 5563000 12404 250 12733 44842;44843;44844 67533;67534;67535;67536;67537 67535 5 VAGVVAPTLPREDLEK KLIDSWMGKGAAKLRVAGVVAPTLPREDLE AGVVAPTLPREDLEKIIAHFLIQQYLKEDY R V A E K I 2 1 0 1 0 0 2 1 0 0 2 1 0 0 2 0 1 0 0 3 0 0 16 1 1692.941 A0A024RAV2;P46063 A0A024RAV2 529 544 RECQL ATP-dependent DNA helicase Q1 yes no 3 0.0025049 49.988 2 2 0.47514 0.6793 82.809 4 Median 0.27583 0.36359 2.1298 2 0 Median 0.9559 1.4924 25.042 2 0 Median 51297000 33804000 17493000 30201000 23403000 6798000 21096000 10401000 10695000 12405 250 12734 44845;44846;44847;44848 67538;67539;67540;67541;67542;67543 67542 6 VAHSDKPGSTSTASFR EENRHLRDEGLRLRKVAHSDKPGSTSTASF AHSDKPGSTSTASFRDNVTSPLPSLLVVIA K V A F R D 2 1 0 1 0 0 0 1 1 0 0 1 0 1 1 4 2 0 0 1 0 0 16 1 1646.8012 A8KA83;Q9P0L0 A8KA83 199 214 VAPA Vesicle-associated membrane protein-associated protein A yes no 3 1.8188E-06 122.12 3 1 0.59192 0.79392 51.84 4 Median 0.53355 0.71909 25.843 3 0 Median 1.2394 1.7833 NaN 1 0 Median 29099000 19016000 10083000 25945000 17738000 8206200 3153900 1277200 1876800 12406 653 12735 44849;44850;44851;44852 67544;67545;67546;67547 67545 3 VAIAENLLDVIK SQKVDTLPYVPEPIKVAIAENLLDVIKDTR PIKVAIAENLLDVIKDTRSKEITSDTMEQS K V A I K D 2 0 1 1 0 0 1 0 0 2 2 1 0 0 0 0 0 0 0 2 0 0 12 0 1296.7653 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1666 1677 AHCTF1 Protein ELYS yes no 2 1.7508E-12 150.15 5 2 0.73029 0.99627 3.7804 5 Median 0.81406 1.0158 4.536 3 0 Median 0.6094 0.97251 3.4137 2 0 Median 280530000 164180000 116350000 142820000 78512000 64305000 137720000 85672000 52044000 12407 1670 12736 44853;44854;44855;44856;44857;44858;44859 67548;67549;67550;67551;67552;67553;67554;67555;67556;67557;67558;67559;67560 67554 13 VALEDDGFR ISEAAKEPAKAKVQKVALEDDGFRLFFTSV KAKVQKVALEDDGFRLFFTSVPGGREKEES K V A F R L 1 1 0 2 0 0 1 1 0 0 1 0 0 1 0 0 0 0 0 1 0 0 9 0 1020.4876 F5H7W8;Q96C57;F5H3K2;F5H8B7;E7ENF1;B4DRA4 F5H7W8 146 154 C12orf43 Uncharacterized protein C12orf43 yes no 2 0.0072685 60.436 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2748800 2748800 0 0 0 0 2748800 2748800 0 12408 1057 12737 44860;44861 67561;67562 67562 2 VALEFGSEEPR RGNQSGRSPNNPFSRVALEFGSEEPRHSEA PFSRVALEFGSEEPRHSEAADSPRSSTVHI R V A P R H 1 1 0 0 0 0 3 1 0 0 1 0 0 1 1 1 0 0 0 1 0 0 11 0 1232.6037 A0A024R0F1;Q9UNY4 A0A024R0F1 891 901 TTF2 Transcription termination factor 2 yes no 2 1.9482E-06 114.5 1 2 0.89162 1.4006 7.3449 2 Median NaN NaN NaN 0 0 Median 0.89162 1.4006 7.3449 2 0 Median 71414000 32153000 39262000 11630000 0 11630000 59784000 32153000 27632000 12409 33 12738 44862;44863;44864 67563;67564;67565;67566;67567 67565 5 VALELPASK LREEVPPILQHHMLKVALELPASKFLWLKA QHHMLKVALELPASKFLWLKAQEGPDAEII K V A S K F 2 0 0 0 0 0 1 0 0 0 2 1 0 0 1 1 0 0 0 1 0 0 9 0 926.54368 O60287 O60287 608 616 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.0063152 70.919 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2430800 0 2430800 2430800 0 2430800 0 0 0 12410 1190 12739 44865 67568 67568 1 VALGHGLK DNIQAGELTEGIWRRVALGHGLKLLTKNGH TEGIWRRVALGHGLKLLTKNGHVYKYDGFR R V A L K L 1 0 0 0 0 0 0 2 1 0 2 1 0 0 0 0 0 0 0 1 0 0 8 0 793.48102 A0A024R4Z6;Q08945;Q59GH7 A0A024R4Z6 56 63 SSRP1 FACT complex subunit SSRP1 yes no 2 0.0078774 92.692 4 2 0.80168 1.0614 6.6077 6 Plateau 0.79606 1.0357 2.8184 4 0 Median 0.72225 1.1434 8.2761 2 0 Median 447280000 250810000 196470000 379120000 212700000 166420000 68165000 38114000 30051000 12411 132 12740 44866;44867;44868;44869;44870;44871 67569;67570;67571;67572;67573;67574;67575;67576 67576 8 VALGNTWK APPEGQTVLDGLEFKVALGNTWKENLTELS LDGLEFKVALGNTWKENLTELSGGQRSLVA K V A W K E 1 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 1 1 0 1 0 0 8 0 887.4865 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27;A0A0C4DGE5 A0A024R158 1072 1079 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.016657 62.546 2 0.58212 0.87869 7.2328 2 Median NaN NaN NaN 0 0 Median 0.58212 0.87869 7.2328 2 0 Median 33017000 21525000 11492000 0 0 0 33017000 21525000 11492000 12412 50 12741 44872;44873 67577;67578;67579 67577 3 VALIGFPSVGK SKGEGFDVMKSGDARVALIGFPSVGKFHSC GDARVALIGFPSVGKFHSCCPSWSTMARSQ R V A G K F 1 0 0 0 0 0 0 2 0 1 1 1 0 1 1 1 0 0 0 2 0 0 11 0 1086.6437 J3QR71;J3QRI9;J3QKW7;A8MZF9;P55039;J3QL90;J3KRL5;B4DIG2;J3QKV7 J3QR71 65 75 DRG2 Developmentally-regulated GTP-binding protein 2 yes no 2 0.01213 104.2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1277700 1277700 0 1277700 1277700 0 0 0 0 12413 661 12742 44874 67580 67580 1 VALIGSPVDLTYTYDHLGDSPK FNARIRKSWLHNDLKVALIGSPVDLTYTYD VDLTYTYDHLGDSPKILQDIASGSHPFSQV K V A P K I 1 0 0 3 0 0 0 2 1 1 3 1 0 0 2 2 2 0 2 2 0 0 22 0 2360.19 B4DJ81;E5KRK5;P28331 B4DJ81 313 334 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 3 7.12E-05 72.585 1 0.51229 0.64892 NaN 1 Median 0.51229 0.64892 NaN 1 0 Median NaN NaN NaN 0 0 Median 3897800 2545800 1352100 3897800 2545800 1352100 0 0 0 12414 815 12743 44875 67581;67582 67581 2 VALRGEDVPLTEQTVSQVLQSAK GGVILESDPQQVVHRVALRGEDVPLTEQTV PLTEQTVSQVLQSAKEQIKWSLLR______ R V A A K E 2 1 0 1 0 3 2 1 0 0 3 1 0 0 1 2 2 0 0 4 0 0 23 1 2467.3282 F8VYK5;F8W651;Q53FU3;A0A024RB72;F8VVA7;P61923 F8VYK5 58 80 COPZ1 Coatomer subunit zeta-1 yes no 3 8.4105E-05 41.76 1 0.42742 0.55019 NaN 1 Median 0.42742 0.55019 NaN 1 0 Median NaN NaN NaN 0 0 Median 7268100 4702200 2565900 7268100 4702200 2565900 0 0 0 12415 261 12744 44876 67583;67584 67584 2 VALSEPQPERR AEIISLCKRYPGFMRVALSEPQPERRFFRR GFMRVALSEPQPERRFFRRGWVTFDRSVNI R V A R R F 1 2 0 0 0 1 2 0 0 0 1 0 0 0 2 1 0 0 0 1 0 0 11 1 1280.6837 Q9BXP5;H7C3A1;H7C1K0 Q9BXP5 450 460 SRRT Serrate RNA effector molecule homolog yes no 3 0.011334 35.33 1 0.52122 0.6807 NaN 1 Median 0.52122 0.6807 NaN 1 0 Median NaN NaN NaN 0 0 Median 9259800 5445700 3814100 9259800 5445700 3814100 0 0 0 12416 1722 12745 44877 67585 67585 1 VALSSETEVALAR ANDIISSTEISSAEKVALSSETEVALARDM EKVALSSETEVALARDMTLPPETNVILTKD K V A A R D 3 1 0 0 0 0 2 0 0 0 2 0 0 0 0 2 1 0 0 2 0 0 13 0 1344.7249 E7EVA0;P27816;B4DM10;Q6NX68;A0A024R2V2;A0A024R2S1 E7EVA0 453 465 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 2.4628E-05 82.261 2 1 1.2228 1.6477 25.48 2 Median 1.2228 1.6477 25.48 2 0 Median NaN NaN NaN 0 0 Median 15636000 6421000 9215300 13113000 6421000 6691700 2523600 0 2523600 12417 1017 12746 44878;44879;44880 67586;67587;67588 67587 2 VALVNDSLSDVTSTTSSR DVQATGRIADDADPRVALVNDSLSDVTSTT VNDSLSDVTSTTSSRVDDHDSEEICLDHLC R V A S R V 1 1 1 2 0 0 0 0 0 0 2 0 0 0 0 5 3 0 0 3 0 0 18 0 1850.9222 Q7Z2W4;A8K9U6;Q05DV5 Q7Z2W4 486 503 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 1.8683E-38 163.33 4 1 0.62 0.85147 60.994 5 Median 0.59251 0.81977 5.3163 4 0 Median 2.0929 3.1941 NaN 1 0 Median 50030000 22689000 27341000 29621000 16671000 12949000 20409000 6017800 14391000 12418 1613 12747 44881;44882;44883;44884;44885 67589;67590;67591;67592;67593;67594;67595;67596 67593 8 VANGQYSHLVLLAAFDCIDDTK DRKVIVKTMKTYVEKVANGQYSHLVLLAAF HLVLLAAFDCIDDTKLVKQIIISEIISSLP K V A T K L 3 0 1 3 1 1 0 1 1 1 3 1 0 1 0 1 1 0 1 2 0 0 22 0 2449.1948 Q15397;B2RDG4 Q15397 394 415 KIAA0020 Pumilio domain-containing protein KIAA0020 yes no 3 0.013166 19.897 1 0.7687 0.98439 NaN 1 Median 0.7687 0.98439 NaN 1 0 Median NaN NaN NaN 0 0 Median 3628900 1964500 1664400 3628900 1964500 1664400 0 0 0 12419 1511 12748 44886 67597 67597 1 VANPSGNLTETYVQDR ARALTQTGGPHVKARVANPSGNLTETYVQD ANPSGNLTETYVQDRGDGMYKVEYTPYEEG R V A D R G 1 1 2 1 0 1 1 1 0 0 1 0 0 0 1 1 2 0 1 2 0 0 16 0 1762.8486 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1297 1312 FLNA;FLJ00119 Filamin-A yes no 2 1.5357E-33 185.57 4 0.74362 1.0013 11.829 4 Median 0.74362 1.0013 11.829 4 0 Median NaN NaN NaN 0 0 Median 108150000 57265000 50886000 108150000 57265000 50886000 0 0 0 12420 1287 12749 44887;44888;44889;44890 67598;67599;67600;67601 67599 4 VANVPNTSLLVNIPQPTPASLK VQIQGQRIIQQGLIRVANVPNTSLLVNIPQ SLLVNIPQPTPASLKGTTATSAQANSTPTS R V A L K G 2 0 3 0 0 1 0 0 0 1 3 1 0 0 4 2 2 0 0 3 0 0 22 0 2272.2791 A0A024R7K7;A0A024R7M6;Q86YP4;B4DKZ7 A0A024R7K7 294 315 GATAD2A Transcriptional repressor p66-alpha yes no 2 5.7311E-13 120.59 4 2 1.0252 1.2905 30.287 6 Median 0.96098 1.1969 8.0706 4 0 Median 1.3421 2.1452 1.5114 2 0 Median 144570000 63801000 80765000 48090000 23948000 24142000 96476000 39854000 56623000 12421 179 12750 44891;44892;44893;44894;44895;44896 67602;67603;67604;67605;67606;67607;67608;67609;67610;67611;67612;67613;67614;67615 67603 14 VANVSAAEDSVSQR SMIQQLATYCARDVRVANVSAAEDSVSQRA RVANVSAAEDSVSQRAVLMEKPDVVVGTPS R V A Q R A 3 1 1 1 0 1 1 0 0 0 0 0 0 0 0 3 0 0 0 3 0 0 14 0 1431.6954 Q9NY93;Q53HB9;H7C3E9;G3V0G3;F8WDT8 Q9NY93 115 128 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 1.008E-27 190.66 4 2 0.92745 1.296 7.1322 6 Median 0.98725 1.324 8.9073 4 0 Median 0.80204 1.2833 1.2896 2 0 Median 162460000 84847000 77616000 79202000 38135000 41068000 83260000 46712000 36548000 12422 1768 12751 44897;44898;44899;44900;44901;44902 67616;67617;67618;67619;67620;67621;67622;67623;67624;67625;67626;67627 67618 12 VANVSLLALYK HAVGDIPGVRFKVVKVANVSLLALYKGKKE KVVKVANVSLLALYKGKKERPRS_______ K V A Y K G 2 0 1 0 0 0 0 0 0 0 3 1 0 0 0 1 0 0 1 2 0 0 11 0 1189.7071 A8K517;P62266 A8K517 125 135 RPS23 40S ribosomal protein S23 yes no 1;2 2.265E-10 153.05 20 4 0.93579 1.1241 20.28 7 Median 0.96693 1.2246 16.986 5 0 Median 0.544 0.85394 4.4754 2 0 Median 6531300000 4125400000 2405800000 4753600000 2966200000 1787400000 1777600000 1159200000 618410000 12423 611 12752 44903;44904;44905;44906;44907;44908;44909;44910;44911;44912;44913;44914;44915;44916;44917;44918;44919;44920;44921;44922;44923;44924;44925;44926 67628;67629;67630;67631;67632;67633;67634;67635;67636;67637;67638;67639;67640;67641;67642;67643;67644;67645;67646;67647;67648;67649;67650;67651;67652;67653;67654;67655;67656;67657;67658;67659;67660;67661;67662;67663;67664;67665 67631 38 VAPAPAVVK ______________________________ KAKGKKVAPAPAVVKKQEAKKVVNPLFEKR K V A V K K 3 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 0 3 0 0 9 0 850.52764 P62424;Q5T8U3 P62424 12 20 RPL7A 60S ribosomal protein L7a yes no 2 0.018518 85.359 3 2 0.72927 0.95217 10.171 3 Median 0.75726 0.99083 5.628 2 0 Median 0.5257 0.84254 NaN 1 0 Median 423840000 232170000 191670000 243490000 141630000 101860000 180350000 90540000 89812000 12424 1411 12753 44927;44928;44929;44930;44931 67666;67667;67668;67669;67670 67667 5 VAPDEHPILLTEAPLNPK DMEKIWYHTFYNELRVAPDEHPILLTEAPL DEHPILLTEAPLNPKINREKMTQIMFEAFN R V A P K I 2 0 1 1 0 0 2 0 1 1 3 1 0 0 4 0 1 0 0 1 0 0 18 0 1953.0571 Q562R1 Q562R1 97 114 ACTBL2 Beta-actin-like protein 2 yes yes 3 2.909E-06 56.959 1 2 1.4171 2.022 126.18 2 Median 0.64954 0.82851 NaN 1 0 Median 3.0916 4.9349 NaN 1 0 Median 1447100000 352610000 1094500000 13583000 7904000 5678800 1433600000 344710000 1088800000 12425 1547 12754 44932;44933;44934 67671;67672;67673 67672 3 VAPEEHPVLLTEAPLNPK DMEKIWHHTFYNELRVAPEEHPVLLTEAPL EEHPVLLTEAPLNPKANREKMTQIMFETFN R V A P K A 2 0 1 0 0 0 3 0 1 0 3 1 0 0 4 0 1 0 0 2 0 0 18 0 1953.0571 Q53GK6;Q53G99;Q53G76;Q1KLZ0;P60709;B4E335;Q8WVW5;B4DW52;G5E9R0;E7EVS6;A1E282;Q562Z7;Q562X9;Q562S0;Q562N0;Q562L5;Q562Y6;Q562N8;Q562U2;Q562N6;Q562R8;Q562P0;Q562L9;Q562P9;Q562N4;Q562L6;Q562Z4;Q562V5;P63261;B4E3A4;B4DVQ0;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 Q53GK6 96 113 PS1TP5BP1;ACTB;ACT;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2;3 1.1357E-53 188.09 13 4 0.77938 1.0268 87.443 11 Median 0.73299 0.9546 19.246 7 0 Median 3.1777 5.0267 6.3192 4 0 Median 5146400000 2732600000 2413900000 2252700000 2036900000 215750000 2893800000 695660000 2198100000 12426 1388;1420 12755 44935;44936;44937;44938;44939;44940;44941;44942;44943;44944;44945;44946;44947;44948;44949;44950;44951 67674;67675;67676;67677;67678;67679;67680;67681;67682;67683;67684;67685;67686;67687;67688;67689;67690;67691;67692;67693;67694;67695;67696;67697;67698;67699;67700;67701;67702;67703;67704;67705;67706;67707;67708;67709;67710;67711 67685 38 VAPLFLVR KKLNTSTKNVPGKMKVAPLFLVRKAQKAAD NVPGKMKVAPLFLVRKAQKAADPVPSFDES K V A V R K 1 1 0 0 0 0 0 0 0 0 2 0 0 1 1 0 0 0 0 2 0 0 8 0 913.57492 Q96QE3;H0UIC2;A0A075B754 Q96QE3 794 801 ATAD5 ATPase family AAA domain-containing protein 5 yes no 2 0.039454 73.039 1 0.90728 1.2851 NaN 1 Median 0.90728 1.2851 NaN 1 0 Median NaN NaN NaN 0 0 Median 1501600 856990 644570 1501600 856990 644570 0 0 0 12427 1698 12756 44952 67712 67712 1 VAPLPEEKMIK V A I K 1 0 0 0 0 0 2 0 0 1 1 2 1 0 2 0 0 0 0 1 0 0 11 1 1253.7053 REV__C0JYZ2 yes no 3 0.052198 23.749 1 0.52987 0.85577 NaN 1 Median NaN NaN NaN 0 0 Median 0.52987 0.85577 NaN 1 0 Median 26207000 16671000 9535900 0 0 0 26207000 16671000 9535900 + 12428 1841 12757 44953 67713 67713 1 VAPPAVLNDISK PQSHGTLTAELWDNKVAPPAVLNDISKKLG DNKVAPPAVLNDISKKLGPISPPQPPSVSA K V A S K K 2 0 1 1 0 0 0 0 0 1 1 1 0 0 2 1 0 0 0 2 0 0 12 0 1222.6921 E7EPN9;Q9Y520;H7C5N8 E7EPN9 1998 2009 PRRC2C Protein PRRC2C yes no 2 0.04373 60.102 1 0.90643 1.1929 NaN 1 Median 0.90643 1.1929 NaN 1 0 Median NaN NaN NaN 0 0 Median 2263100 1159500 1103600 2263100 1159500 1103600 0 0 0 12429 1010 12758 44954 67714 67714 1 VAQGVSGAVQDK LSSQNRYFSEADKIKVAQGVSGAVQDKGSI KIKVAQGVSGAVQDKGSIHKFVPYLIAGIQ K V A D K G 2 0 0 1 0 2 0 2 0 0 0 1 0 0 0 1 0 0 0 3 0 0 12 0 1157.6041 P12268;H0Y4R1 P12268 439 450 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2 8.3953E-22 157.38 4 0.3512 0.43701 9.5934 3 Plateau 0.3512 0.43701 9.5934 3 0 Plateau NaN NaN NaN 0 0 Median 66560000 50063000 16497000 66560000 50063000 16497000 0 0 0 12430 1261 12759 44955;44956;44957;44958 67715;67716;67717;67718;67719;67720;67721 67718 7 VAQIQNAGLGEFR AEKWRRQIIGEISKKVAQIQNAGLGEFRIR KKVAQIQNAGLGEFRIRDLNDEINKLLREK K V A F R I 2 1 1 0 0 2 1 2 0 1 1 0 0 1 0 0 0 0 0 1 0 0 13 0 1401.7365 Q9ULR0;D6RC18;A8MVI5 Q9ULR0 57 69 ISY1 Pre-mRNA-splicing factor ISY1 homolog yes no 2 0.00043865 90.05 3 0.51052 0.72341 NaN 1 Median 0.51052 0.72341 NaN 1 0 Median NaN NaN NaN 0 0 Median 4978000 4173700 804320 4978000 4173700 804320 0 0 0 12431 1792 12760 44959;44960;44961 67722;67723;67724 67724 3 VAQLEQVYIR NCQMSNITVTYRDGRVAQLEQVYIRGSKIR YRDGRVAQLEQVYIRGSKIRFLILPDMLKN R V A I R G 1 1 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 0 1 2 0 0 10 0 1217.6768 P62318 P62318 55 64 SNRPD3 Small nuclear ribonucleoprotein Sm D3 yes yes 2 1.7671E-16 152.47 4 2 0.73947 1.0633 10.271 6 Median 0.73947 0.98973 11.097 4 0 Median 0.74947 1.1531 3.6622 2 0 Median 128000000 66735000 61266000 86954000 44929000 42025000 41047000 21806000 19241000 12432 1409 12761 44962;44963;44964;44965;44966;44967 67725;67726;67727;67728;67729;67730;67731;67732;67733;67734;67735 67730 11 VAQLLER RHGERDVEVERWRERVAQLLERWQAVLAQT EVERWRERVAQLLERWQAVLAQTDVRQREL R V A E R W 1 1 0 0 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 827.4865 Q15149 Q15149 1318 1324 PLEC Plectin yes yes 2 0.031009 62.659 1 0.94444 1.2555 NaN 1 Median 0.94444 1.2555 NaN 1 0 Median NaN NaN NaN 0 0 Median 15869000 8286900 7582600 15869000 8286900 7582600 0 0 0 12433 1507 12762 44968 67736 67736 1 VAQNLVGPDNVHVALSLVEYKPELQK LNKISARCIAPETLRVAQNLVGPDNVHVAL HVALSLVEYKPELQKAMEFVFGTTFVCDNM R V A Q K A 2 0 2 1 0 2 2 1 1 0 4 2 0 0 2 1 0 0 1 5 0 0 26 1 2859.5494 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 593 618 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 3;4 4.2044E-57 146.15 7 1 0.64937 0.79402 8.9074 8 Median 0.65052 0.79564 9.0307 7 0 Median 0.45591 0.74512 NaN 1 0 Median 965760000 576220000 389550000 799730000 476140000 323590000 166040000 100080000 65959000 12434 50 12763 44969;44970;44971;44972;44973;44974;44975;44976 67737;67738;67739;67740;67741;67742;67743;67744;67745;67746;67747;67748;67749;67750 67749 14 VAQPETPVTLQFQGSK VKIAQLASITGPQSRVAQPETPVTLQFQGS AQPETPVTLQFQGSKFTLSHSQLRQLTAGQ R V A S K F 1 0 0 0 0 3 1 1 0 0 1 1 0 1 2 1 2 0 0 2 0 0 16 0 1728.9046 Q96L91;A7E2D7 Q96L91 1619 1634 EP400 E1A-binding protein p400 yes no 2 0.0041405 75.102 1 0.9218 1.1322 NaN 1 Median 0.9218 1.1322 NaN 1 0 Median NaN NaN NaN 0 0 Median 1472900 713690 759210 1472900 713690 759210 0 0 0 12435 1692 12764 44977 67751 67751 1 VAQPTITDNK KKGEITGEVRMPSGKVAQPTITDNKDGTVT MPSGKVAQPTITDNKDGTVTVRYAPSEAGL K V A N K D 1 0 1 1 0 1 0 0 0 1 0 1 0 0 1 0 2 0 0 1 0 0 10 0 1085.5717 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5;H0Y5F3 P21333 1815 1824 FLNA;FLJ00119 Filamin-A yes no 2 2.69E-07 122.13 4 0.92818 1.1484 3.7545 4 Median 0.92818 1.1484 3.7545 4 0 Median NaN NaN NaN 0 0 Median 80737000 41262000 39474000 80737000 41262000 39474000 0 0 0 12436 1287 12765 44978;44979;44980;44981 67752;67753;67754;67755;67756 67754 5 VAQREEELEETGNQHNDVEIEEAGEEEEK VVRNEEQKAEQEEGKVAQREEELEETGNQH HNDVEIEEAGEEEEKEIAIVHSDAEKEQEE K V A E K E 2 1 2 1 0 2 12 2 1 1 1 1 0 0 0 0 1 0 0 2 0 0 29 1 3368.4764 A8K964;Q9H307;B4DTD4;B4E392 A8K964 312 340 PNN Pinin yes no 4 1.4125E-07 77.401 3 0.23513 0.31073 83.833 2 Median 0.23513 0.31073 83.833 2 0 Median NaN NaN NaN 0 0 Median 26806000 20627000 6178800 26806000 20627000 6178800 0 0 0 12437 644 12766 44982;44983;44984 67757;67758;67759;67760;67761 67758 5 VAQYVVR DTELQGMNEYLSSFKVAQYVVREEEMGEEE NEYLSSFKVAQYVVREEEMGEEEEVEREII K V A V R E 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 7 0 833.47594 B3KY63;F5GWX5;A0A0C4DGG9;Q14839;Q8TDI0;K7EMY3;Q659F1;Q659D0;Q6ZU36;B3KRD4;K7EPV1;K7ESA5;Q12873;B4DLC6 B3KY63 1256 1262 CHD4;CHD5;DKFZp434K213;DKFZp434P202;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 no no 2 0.026516 59.795 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12438 428;1458 12767 44985 67762 67762 1 VAQYVVREEEMGEEEEVER DTELQGMNEYLSSFKVAQYVVREEEMGEEE VVREEEMGEEEEVEREIIKQEESVDPDYWE K V A E R E 1 2 0 0 0 1 8 1 0 0 0 0 1 0 0 0 0 0 1 4 0 0 19 1 2309.0482 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 1256 1274 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 0.00022867 42.716 1 1.2204 1.6485 NaN 1 Median NaN NaN NaN 0 0 Median 1.2204 1.6485 NaN 1 0 Median 6273200 2744100 3529100 0 0 0 6273200 2744100 3529100 12439 428 12768 44986 67763 67763 147 1 VARPLPAEEPER KDQDEKRRRVTSRERVARPLPAEEPERAKS RERVARPLPAEEPERAKSGTRTEKEEERDE R V A E R A 2 2 0 0 0 0 3 0 0 0 1 0 0 0 3 0 0 0 0 1 0 0 12 1 1362.7256 A0A024R7E3;P26358;Q59FP7;K7ENQ6;I6L9H2 A0A024R7E3 275 286 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 no no 2;3 0.0082111 56.404 2 0.90322 1.2627 14.864 2 Median NaN NaN NaN 0 0 Median 0.90322 1.2627 14.864 2 0 Median 16816000 9017000 7799300 0 0 0 16816000 9017000 7799300 12440 176;1129 12769 44987;44988 67764;67765 67765 2 VASIETGLAAAAAK PSVPRQDRPVREGTRVASIETGLAAAAAKL RVASIETGLAAAAAKLSQQEEQKSKKKKSA R V A A K L 6 0 0 0 0 0 1 1 0 1 1 1 0 0 0 1 1 0 0 1 0 0 14 0 1271.7085 H0Y3N9;Q9UPP1;H0Y589;O75151;Q8N359;B4DH04;E7ET14;A0A087WW48;Q6P2C5 O75151 927 940 PHF8;PHF2 Histone lysine demethylase PHF8;Lysine-specific demethylase PHF2 no no 2 1.265E-06 129.88 2 2 0.8728 1.2177 2.4907 4 Median 0.95847 1.2153 4.3044 2 0 Median 0.81265 1.2177 0.21494 2 0 Median 39396000 20713000 18683000 19723000 10163000 9559900 19673000 10550000 9123200 12441 1196;1088 12770 44989;44990;44991;44992 67766;67767;67768;67769;67770;67771 67766 6 VASTLTEEGGGGGGGGGSVAPKPPR PGSQALQVVPDLSKKVASTLTEEGGGGGGG GGGGGGGSVAPKPPRGRKKKRMLESGLPEM K V A P R G 2 1 0 0 0 0 2 9 0 0 1 1 0 0 3 2 2 0 0 2 0 0 25 1 2194.0978 D3DUR9;Q8TF68;B4DQU6;F5H8L7;E9PHB3;F5H105;A9X425;A9X424 D3DUR9 168 192 ZNF384 Zinc finger protein 384 yes no 3 1.0105E-20 146.18 4 2 0.71301 1.0547 9.7903 4 Median 0.73435 0.96956 1.2061 2 0 Median 0.69082 1.1477 1.2516 2 0 Median 63390000 38488000 24902000 21978000 15063000 6914800 41412000 23425000 17987000 12442 983 12771 44993;44994;44995;44996;44997;44998 67772;67773;67774;67775;67776;67777;67778;67779;67780;67781 67773 10 VASVSQNAIVSAAGNIAR IQVYDLGQDGQGMSRVASVSQNAIVSAAGN VSQNAIVSAAGNIARTIDRSVFKPIVQIAV R V A A R T 5 1 2 0 0 1 0 1 0 2 0 0 0 0 0 3 0 0 0 3 0 0 18 0 1726.9326 B4DLT2;A0A024R071;O75694;E9PF10 B4DLT2 277 294 NUP155 Nuclear pore complex protein Nup155 yes no 2 5.1814E-25 164.13 5 2 0.35559 0.4771 140.95 4 Median 0.40935 0.56 40.808 3 0 Plateau 4.1047 5.944 NaN 1 0 Median 58084000 26067000 32018000 31679000 23428000 8251900 26405000 2639100 23766000 12443 29 12772 44999;45000;45001;45002;45003;45004;45005 67782;67783;67784;67785;67786;67787;67788;67789;67790 67784 9 VASYSGTVTQATFTR VPSEEEIVQPLDSTRVASYSGTVTQATFTR VASYSGTVTQATFTRTYDGPGSQPVICQSS R V A T R T 2 1 0 0 0 1 0 1 0 0 0 0 0 1 0 2 4 0 1 2 0 0 15 0 1587.7893 Q5VWN6 Q5VWN6 965 979 FAM208B Protein FAM208B yes yes 2 0.00010593 112.64 3 0.54926 0.77288 8.7346 3 Median 0.54926 0.77288 8.7346 3 0 Median NaN NaN NaN 0 0 Median 9521100 5480300 4040700 9521100 5480300 4040700 0 0 0 12444 1579 12773 45006;45007;45008 67791;67792;67793 67792 3 VATGQELSNNILDTVFK AHRPVRLAEFKRAVKVATGQELSNNILDTV TGQELSNNILDTVFKIFDLDGDECLSHEEF K V A F K I 1 0 2 1 0 1 1 1 0 1 2 1 0 1 0 1 2 0 0 2 0 0 17 0 1847.9629 A0A0S2Z6V5;Q8IYU8 A0A0S2Z6V5 356 372 MICU2 Calcium uptake protein 2, mitochondrial yes no 2 0.002742 76.073 1 0.40788 0.49118 NaN 1 Median 0.40788 0.49118 NaN 1 0 Median NaN NaN NaN 0 0 Median 562350 384090 178270 562350 384090 178270 0 0 0 12445 484 12774 45009 67794 67794 1 VATIQFR V A F R 1 1 0 0 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 7 0 833.47594 REV__Q7Z745 yes no 2 0.024929 69.39 1 0.97607 1.3044 NaN 1 Median NaN NaN NaN 0 0 Median 0.97607 1.3044 NaN 1 0 Median 5495000 2731100 2763900 0 0 0 5495000 2731100 2763900 + 12446 1858 12775 45010 67795 67795 1 VATIQQCQSPTNYLQGLDGKPIIAAPVFTK PPAVPQAQHLVAQPRVATIQQCQSPTNYLQ GLDGKPIIAAPVFTKMLQNLSASEGQLVVF R V A T K M 3 0 1 1 1 4 0 2 0 3 2 2 0 1 3 1 3 0 1 2 0 0 30 1 3257.7118 A0A087WX60;Q86TC9;A5PKT7 A0A087WX60 116 145 MYPN Myopalladin yes no 3 0.0070542 35.934 1 0.25613 0.30906 NaN 1 Median 0.25613 0.30906 NaN 1 0 Median NaN NaN NaN 0 0 Median 1539000 1215200 323820 1539000 1215200 323820 0 0 0 12447 356 12776 45011 67796 67796 1 VATLNSEEESDPPTYK SFAEHRSGLVPQQIKVATLNSEEESDPPTY ATLNSEEESDPPTYKDAFPPLPEKAACLES K V A Y K D 1 0 1 1 0 0 3 0 0 0 1 1 0 0 2 2 2 0 1 1 0 0 16 0 1778.821 B2R5V9;A0A024R4E5;Q00341;C9JT62;C9JHS7;C9JK79;C9JHZ8;C9JZI8;C9J5E5;C9JIZ1;C9JMQ6;C9JQ82;C9JBS3;C9JEJ8;C9JHN6 B2R5V9 26 41 HDLBP Vigilin no no 2 0.0058262 48.004 2 1 0.7385 0.95598 5.1544 2 Median 0.7385 0.95598 5.1544 2 0 Median NaN NaN NaN 0 0 Median 15018000 7045100 7973300 10847000 7045100 3802000 4171300 0 4171300 12448 122 12777 45012;45013;45014 67797;67798;67799 67797 3 VATTSVITIVK TFARTVARGPVAPSKVATTSVITIVKSTEL APSKVATTSVITIVKSTELSSTSVPFSAAS K V A V K S 1 0 0 0 0 0 0 0 0 2 0 1 0 0 0 1 3 0 0 3 0 0 11 0 1130.6911 A0A024R804;A8WFP5;O60675 A0A024R804 131 141 MAFK Transcription factor MafK yes no 2 9.2356E-05 93.667 3 2 1.2806 1.8986 12.803 5 Median 1.3096 1.6357 11.866 3 0 Median 1.2564 1.9931 0.72317 2 0 Median 160250000 70976000 89279000 90479000 38737000 51742000 69776000 32239000 37536000 12449 188 12778 45015;45016;45017;45018;45019 67800;67801;67802;67803;67804;67805;67806;67807;67808;67809 67804 10 VATVSLPR IMLIKLSSPATLNSRVATVSLPRSCAAAGT PATLNSRVATVSLPRSCAAAGTECLISGWG R V A P R S 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 2 0 0 8 0 841.50215 CON__P00761 CON__P00761 108 115 yes yes 2 0.0028478 101.28 5 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 87728000 87728000 0 87728000 87728000 0 0 0 0 + 12450 947 12779 45020;45021;45022;45023;45024 67810;67811;67812;67813;67814 67814 5 VATWFNQPAR GMVLKPHFHKDWQRRVATWFNQPARKIRRR DWQRRVATWFNQPARKIRRRKARQAKARRI R V A A R K 2 1 1 0 0 1 0 0 0 0 0 0 0 1 1 0 1 1 0 1 0 0 10 0 1188.604 Q6NZ55;A8K4C8;P26373;J3QSB4;H3BTH3;B4DGL7 Q6NZ55 22 31 RPL13 60S ribosomal protein L13 yes no 2 7.1464E-09 101.6 2 0.69451 1.151 NaN 1 Median NaN NaN NaN 0 0 Median 0.69451 1.151 NaN 1 0 Median 107440000 64199000 43244000 0 0 0 107440000 64199000 43244000 12451 604 12780 45025;45026 67815;67816;67817;67818 67815 4 VATWFNQPARK GMVLKPHFHKDWQRRVATWFNQPARKIRRR WQRRVATWFNQPARKIRRRKARQAKARRIA R V A R K I 2 1 1 0 0 1 0 0 0 0 0 1 0 1 1 0 1 1 0 1 0 0 11 1 1316.699 Q6NZ55;A8K4C8;P26373;J3QSB4;H3BTH3;B4DGL7 Q6NZ55 22 32 RPL13 60S ribosomal protein L13 yes no 3 0.046826 15.539 1 0.49436 0.76321 NaN 1 Median NaN NaN NaN 0 0 Median 0.49436 0.76321 NaN 1 0 Median 9853400 6364800 3488600 0 0 0 9853400 6364800 3488600 12452 604 12781 45027 67819 67819 1 VAVEDSVFLVFSLK ELWAHYVEELNSTQRVAVEDSVFLVFSLKK RVAVEDSVFLVFSLKKFIYALKAPKSFPKG R V A L K K 1 0 0 1 0 0 1 0 0 0 2 1 0 2 0 2 0 0 0 4 0 0 14 0 1551.8548 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1 B2RWN5 781 794 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 6.8913E-06 134.75 2 1.1292 1.4085 NaN 1 Median 1.1292 1.4085 NaN 1 0 Median NaN NaN NaN 0 0 Median 20053000 9602700 10450000 20053000 9602700 10450000 0 0 0 12453 748 12782 45028;45029 67820;67821 67820 1 VAVEEVDEEGK ESRSSFSQHARTSGRVAVEEVDEEGKFVRL TSGRVAVEEVDEEGKFVRLRNKSNEDQSMG R V A G K F 1 0 0 1 0 0 4 1 0 0 0 1 0 0 0 0 0 0 0 3 0 0 11 0 1202.5667 P02545;W8QEH3;Q5I6Y5;Q5TCI8;B4DFR3;A0A0C4DGC5 P02545 440 450 LMNA Prelamin-A/C;Lamin-A/C yes no 2 2.7015E-09 161.27 4 2 0.66047 0.86381 59.75 6 Median 0.63697 0.81434 6.5451 4 0 Median 1.6276 2.5914 0.77217 2 0 Median 433990000 233530000 200470000 286440000 177220000 109220000 147560000 56307000 91248000 12454 1229 12783 45030;45031;45032;45033;45034;45035 67822;67823;67824;67825;67826;67827;67828;67829;67830;67831;67832;67833;67834 67822 13 VAVEYLDPSPEVQK FPNKQGYVLSSIEGRVAVEYLDPSPEVQKK RVAVEYLDPSPEVQKKKYAFKCHRLKENNI R V A Q K K 1 0 0 1 0 1 2 0 0 0 1 1 0 0 2 1 0 0 1 3 0 0 14 0 1572.8035 J3QT28;A0A140VJF3;O43684;B4DDM6 J3QT28 203 216 BUB3 Mitotic checkpoint protein BUB3 yes no 2 3.7239E-14 143 4 2 0.49689 0.6333 23.496 6 Median 0.49013 0.62172 2.8376 4 0 Median 0.64574 0.973 1.8341 2 0 Median 72490000 46795000 25695000 48109000 33122000 14987000 24381000 13672000 10709000 12455 494 12784 45036;45037;45038;45039;45040;45041 67835;67836;67837;67838;67839;67840;67841;67842;67843;67844 67840 10 VAVFFGGLSIK SKEYERFSKYMPNVKVAVFFGGLSIKKDEE PNVKVAVFFGGLSIKKDEEVLKKNCPHIVV K V A I K K 1 0 0 0 0 0 0 2 0 1 1 1 0 2 0 1 0 0 0 2 0 0 11 0 1136.6594 A0A024RCM3;Q13838;Q5STU3;F6WLT2;A0A0G2JJZ9;F6S4E6;A0A0A0MT12;F6TRA5;Q59G92;A0A140T9X3;B4DP52;A0A140T996;A0A140T9L4;A0A140T973;A0A140T9K1;A0A140T9X9;B4DIJ6;F6UJC5;A0A140TA18;F6QYI9;A0A0G2JJL7;F6R6M7;B4DIZ8;A0A140T9K2;A0A140T9N3 A0A024RCM3 145 155 hCG_2005638;DDX39B Spliceosome RNA helicase DDX39B yes no 2 0.011827 70.1 4 1 0.54944 0.70113 2.3921 4 Median 0.54944 0.70113 2.3921 4 0 Median NaN NaN NaN 0 0 Median 22364000 14287000 8077600 21607000 14287000 7320300 757320 0 757320 12456 296 12785 45042;45043;45044;45045;45046 67845;67846;67847;67848;67849;67850 67847 6 VAVGELTDEDVK ATVILANHVAKKDNKVAVGELTDEDVKMIT DNKVAVGELTDEDVKMITSLSKDQQIGEKI K V A V K M 1 0 0 2 0 0 2 1 0 0 1 1 0 0 0 0 1 0 0 3 0 0 12 0 1273.6402 B4DSV5;B3KXZ4;H0Y8E6;P49736;B7Z8Z6 B4DSV5 321 332 MCM2 DNA helicase;DNA replication licensing factor MCM2 yes no 2 0.0011217 99.788 3 0.44526 0.56427 NaN 1 Median 0.44526 0.56427 NaN 1 0 Median NaN NaN NaN 0 0 Median 11463000 10076000 1386800 11463000 10076000 1386800 0 0 0 12457 790 12786 45047;45048;45049 67851;67852;67853 67853 3 VAVLENQNK CRRKKKEYVKCLENRVAVLENQNKTLIEEL KCLENRVAVLENQNKTLIEELKALKDLYCH R V A N K T 1 0 2 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 9 0 1013.5506 Q53X93;Q5U0J5;P16220;Q53RU9;E9PAR2;Q59FC7;G5E998;B2R8K4;F1JVV6;F1JVV5;P18846 Q53X93 301 309 CREB1;CREM;EWSR1/ATF1 fusion;ATF1 Cyclic AMP-responsive element-binding protein 1;Cyclic AMP-dependent transcription factor ATF-1 yes no 2 2.7121E-08 116.88 2 1 0.60005 0.7561 3.8658 2 Median 0.60005 0.7561 3.8658 2 0 Median NaN NaN NaN 0 0 Median 34878000 23776000 11102000 31908000 20806000 11102000 2969500 2969500 0 12458 1272 12787 45050;45051;45052 67854;67855;67856;67857 67854 3 VAVLQALASTVNR GIEEVVIPKKKTWDKVAVLQALASTVNRDT DKVAVLQALASTVNRDTTAVPYVFQDDPYL K V A N R D 3 1 1 0 0 1 0 0 0 0 2 0 0 0 0 1 1 0 0 3 0 0 13 0 1340.7776 B8ZZQ4;B4DF73;Q96EY7 B8ZZQ4 68 80 PTCD3 Pentatricopeptide repeat domain-containing protein 3, mitochondrial yes no 2 0.0078296 62.303 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2940000 2940000 0 2940000 2940000 0 0 0 0 12459 802 12788 45053 67858 67858 1 VAVQGDVVR NNCTTSEDSLVLYNRVAVQGDVVRELKAKK LVLYNRVAVQGDVVRELKAKKAPKEDVDAA R V A V R E 1 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 4 0 0 9 0 941.52943 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 757 765 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.0020281 81.548 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5548800 0 5548800 0 0 0 5548800 0 5548800 12460 1242 12789 45054 67859 67859 1 VAVTEGCQPSR EVTYDDVPIPNSPFKVAVTEGCQPSRVQAQ SPFKVAVTEGCQPSRVQAQGPGLKEAFTNK K V A S R V 1 1 0 0 1 1 1 1 0 0 0 0 0 0 1 1 1 0 0 2 0 0 11 0 1202.5714 O75369;A0A024R321;Q68CT4;E7EN95 O75369 1320 1330 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.0012624 71.349 1 0.84725 1.1298 NaN 1 Median 0.84725 1.1298 NaN 1 0 Median NaN NaN NaN 0 0 Median 2997400 1686600 1310800 2997400 1686600 1310800 0 0 0 12461 1199 12790 45055 67860;67861 67860 2 VAVVNQIAR RFESLEPEMNNQASRVAVVNQIARQLMHSG NNQASRVAVVNQIARQLMHSGHPSEKEIKA R V A A R Q 2 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 3 0 0 9 0 968.57671 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24 B2ZZ89 905 913 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.0010737 107.32 4 0.75461 1.0161 3.7149 4 Median 0.75461 1.0161 3.7149 4 0 Median NaN NaN NaN 0 0 Median 82062000 46142000 35920000 82062000 46142000 35920000 0 0 0 12462 346 12791 45056;45057;45058;45059 67862;67863;67864;67865;67866 67864 5 VAYPQADSNLR GIRTVIIRQHEIVLKVAYPQADSNLRNIVT IVLKVAYPQADSNLRNIVTEQLVALIDCFL K V A L R N 2 1 1 1 0 1 0 0 0 0 1 0 0 0 1 1 0 0 1 1 0 0 11 0 1232.6149 Q8WUM0;B4E206;A0A024R3R6;B4E3T7 Q8WUM0 788 798 NUP133 Nuclear pore complex protein Nup133 yes no 2 0.016025 87.806 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3612000 3612000 0 3612000 3612000 0 0 0 0 12463 1666 12792 45060;45061 67867;67868 67867 2 VAYVSFGPHAGK ______________________________ VGRVAYVSFGPHAGKLVAIVDVIDQNRALV R V A G K L 2 0 0 0 0 0 0 2 1 0 0 1 0 1 1 1 0 0 1 2 0 0 12 0 1231.635 E7EPB3;A0PJ62;B7Z6S8;A8K7N0;Q6IPH7;P50914 E7EPB3 12 23 RPL14 60S ribosomal protein L14 yes no 2;3 1.2877E-16 147.2 8 4 0.71605 1.0194 10.876 12 Median 0.76118 1.0023 13.478 8 0 Median 0.64072 1.0194 0.84848 4 0 Median 3044800000 1710300000 1334500000 2717900000 1509900000 1207900000 326910000 200350000 126560000 12464 532 12793 45062;45063;45064;45065;45066;45067;45068;45069;45070;45071;45072;45073 67869;67870;67871;67872;67873;67874;67875;67876;67877;67878;67879;67880;67881;67882;67883;67884;67885;67886;67887;67888;67889;67890;67891 67882 23 VCADLIR IRITLTSRNVKSLEKVCADLIRGAKEKNLK RNVKSLEKVCADLIRGAKEKNLKVKGPVRM K V C I R G 1 1 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 7 0 845.44292 P60866;E5RJX2 P60866 35 41 RPS20 40S ribosomal protein S20 yes no 2 0.018098 79.939 1 0.82112 1.1405 NaN 1 Median 0.82112 1.1405 NaN 1 0 Median NaN NaN NaN 0 0 Median 195090000 114820000 80272000 195090000 114820000 80272000 0 0 0 12465 1389 12794 45074 67892;67893 67892 2 VCEEIAIIPSK KYYTRLGNDFHTNKRVCEEIAIIPSKKLRN TNKRVCEEIAIIPSKKLRNKIAGYVTHLMK R V C S K K 1 0 0 0 1 0 2 0 0 3 0 1 0 0 1 1 0 0 0 1 0 0 11 0 1257.6639 H0YN88;A0A075B716;P08708;H0YN73 H0YN88 34 44 RPS17 40S ribosomal protein S17 yes no 2 0.010322 108.47 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4117100 4117100 0 4117100 4117100 0 0 0 0 12466 327 12795 45075 67894 67894 1 VCENIPIVLCGNK VTYKNVPNWHRDLVRVCENIPIVLCGNKVD VRVCENIPIVLCGNKVDIKDRKVKAKSIVF R V C N K V 0 0 2 0 2 0 1 1 0 2 1 1 0 0 1 0 0 0 0 2 0 0 13 0 1514.7585 B5MDF5;P62826;J3KQE5;F5H018;B4DV51 B5MDF5 128 140 RAN GTP-binding nuclear protein Ran yes no 2 0.00016132 83.869 5 0.66313 0.83612 7.3157 4 Median 0.66313 0.83612 7.3157 4 0 Median NaN NaN NaN 0 0 Median 65778000 38314000 27463000 65778000 38314000 27463000 0 0 0 12467 901 12796 45076;45077;45078;45079;45080 67895;67896;67897;67898;67899;67900 67900 6 VCFVGDGFTR TGKRKKKAWKRMVTKVCFVGDGFTRKPPKY RMVTKVCFVGDGFTRKPPKYERFIRPMGLR K V C T R K 0 1 0 1 1 0 0 2 0 0 0 0 0 2 0 0 1 0 0 2 0 0 10 0 1156.5335 Q5J7U2;O95478;A0A0A0MQZ6;H0YAI9 Q5J7U2 153 162 CDK105;NSA2 Ribosome biogenesis protein NSA2 homolog yes no 2 0.0029446 68.625 2 0.51084 0.68145 48.891 2 Median 0.51084 0.68145 48.891 2 0 Median NaN NaN NaN 0 0 Median 33379000 21015000 12364000 33379000 21015000 12364000 0 0 0 12468 1221 12797 45081;45082 67901;67902;67903 67902 3 VCLDIIYK DFVQVMRHRDDERQKVCLDIIYKMMPKLKP RDDERQKVCLDIIYKMMPKLKPVELRELLN K V C Y K M 0 0 0 1 1 0 0 0 0 2 1 1 0 0 0 0 0 0 1 1 0 0 8 0 1022.5471 P78527 P78527 2434 2441 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.036394 46.994 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3476400 3476400 0 0 0 0 3476400 3476400 0 12469 1427 12798 45083 67904 67904 1 VCLLINK LLKSHEANSNAVRFRVCLLINKLLGSMPEN NSNAVRFRVCLLINKLLGSMPENAQIDDDV R V C N K L 0 0 1 0 1 0 0 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 7 0 858.49971 Q9BPX3;Q6NUR1;D6RA93 Q9BPX3 118 124 NCAPG Condensin complex subunit 3 yes no 2 0.022812 90.939 3 1 0.97367 1.1399 27.369 4 Linear 0.73474 0.91646 4.5868 3 0 Plateau 0.34429 0.51013 NaN 1 0 Median 86921000 53024000 33897000 76514000 45330000 31184000 10407000 7694000 2712700 12470 1706 12799 45084;45085;45086;45087 67905;67906;67907;67908;67909 67908 5 VCNFLASQVPFPSR PGLFGTPLLTSLPEKVCNFLASQVPFPSRL KVCNFLASQVPFPSRLGDPAEYAHLVQAII K V C S R L 1 1 1 0 1 1 0 0 0 0 1 0 0 2 2 2 0 0 0 2 0 0 14 0 1620.8082 A0A0S2Z410;Q99714 A0A0S2Z410 213 226 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2 5.9823E-18 155.47 4 0.3178 0.42259 6.1784 4 Median 0.3178 0.42259 6.1784 4 0 Median NaN NaN NaN 0 0 Median 61025000 46630000 14394000 61025000 46630000 14394000 0 0 0 12471 458 12800 45088;45089;45090;45091 67910;67911;67912;67913;67914;67915;67916;67917;67918 67916 9 VCNNPGLYSNPDLSAAASLALGK DGKQTLAAFVPLLLKVCNNPGLYSNPDLSA SNPDLSAAASLALGKFCMISATFCDSQLRL K V C G K F 4 0 3 1 1 0 0 2 0 0 4 1 0 0 2 3 0 0 1 1 0 0 23 0 2331.1529 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 1021 1043 NCAPD2 Condensin complex subunit 1 yes no 2 1.3566E-76 199.33 5 0.72261 0.89256 5.7251 4 Median 0.72261 0.89256 5.7251 4 0 Median NaN NaN NaN 0 0 Median 140530000 77820000 62711000 140530000 77820000 62711000 0 0 0 12472 757 12801 45092;45093;45094;45095;45096 67919;67920;67921;67922;67923;67924;67925;67926;67927;67928 67924 10 VCNPIITK AEKEEFEHQQKELEKVCNPIITKLYQSAGG QQKELEKVCNPIITKLYQSAGGMPGGMPGG K V C T K L 0 0 1 0 1 0 0 0 0 2 0 1 0 0 1 0 1 0 0 1 0 0 8 0 943.51609 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;E9PNE6;B4E1Q1;A8K7Q2;Q96H53;E9PS65;Q96BE0;Q9NZ87;Q9NWW3 V9HW22 602 609 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein yes no 2 0.0093163 82.241 3 1 0.66315 0.86234 48.561 4 Median 0.65122 0.84493 21.493 3 0 Median 1.2493 1.8851 NaN 1 0 Median 273480000 164840000 108630000 257310000 157040000 100270000 16161000 7798900 8362400 12473 1253 12802 45097;45098;45099;45100 67929;67930;67931;67932;67933 67932 5 VCNVAPIAGETK NVGKSSVINTLRSKKVCNVAPIAGETKVWQ SKKVCNVAPIAGETKVWQYITLMRRIFLID K V C T K V 2 0 1 0 1 0 1 1 0 1 0 1 0 0 1 0 1 0 0 2 0 0 12 0 1257.6387 Q5T0F3;Q13823;B4DPI9;H0YG10 Q5T0F3 335 346 GNL2 Nucleolar GTP-binding protein 2 yes no 2 0.00048802 81.771 2 0.71629 0.9173 7.7684 2 Median 0.71629 0.9173 7.7684 2 0 Median NaN NaN NaN 0 0 Median 19726000 11214000 8512000 19726000 11214000 8512000 0 0 0 12474 1477 12803 45101;45102 67934;67935;67936 67936 3 VCNYGLTFTQK TDTGKASGNLETKYKVCNYGLTFTQKWNTD TKYKVCNYGLTFTQKWNTDNTLGTEISWEN K V C Q K W 0 0 1 0 1 1 0 1 0 0 1 1 0 1 0 0 2 0 1 1 0 0 11 0 1329.6387 Q9Y277;E5RJN6;E5RHZ6;E5RK27;E5RFP6;E5RHE1 Q9Y277 64 74 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 2 6.3841E-09 154.01 4 0.55535 0.6934 8.8256 4 Median 0.55535 0.6934 8.8256 4 0 Median NaN NaN NaN 0 0 Median 142040000 91492000 50550000 142040000 91492000 50550000 0 0 0 12475 1803 12804 45103;45104;45105;45106 67937;67938;67939;67940;67941;67942 67938 6 VCPPHLK LDDWNRIAELQQRNRVCPPHLKTCYPLESR AELQQRNRVCPPHLKTCYPLESRPSLSLGT R V C L K T 0 0 0 0 1 0 0 0 1 0 1 1 0 0 2 0 0 0 0 1 0 0 7 0 849.45309 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q9UNL7;Q4LE64;Q14980 Q4LE64 1915 1921 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.02186 105.42 1 0.66344 0.84258 NaN 1 Median 0.66344 0.84258 NaN 1 0 Median NaN NaN NaN 0 0 Median 14304000 8896700 5407500 14304000 8896700 5407500 0 0 0 12476 148;1499 12805 45107 67943 67943 1 VCTLAIIDPGDSDIIR GNNIELGTACGKYYRVCTLAIIDPGDSDII CTLAIIDPGDSDIIRSMPEQTGE_______ R V C I R S 1 1 0 3 1 0 0 1 0 4 1 0 0 0 1 1 1 0 0 1 0 0 16 0 1756.9029 E5RI99;A0A024R9D3;P62888;A0A0C4DH44;A0A0B4J213 E5RI99 91 106 RPL30 60S ribosomal protein L30 yes no 2 6.275E-43 201 6 2 0.75343 1.0391 25.337 6 Median 0.77169 1.0559 1.9911 4 0 Median 0.39223 0.64572 0.63244 2 0 Median 2297900000 1188100000 1109800000 1960600000 941870000 1018700000 337320000 246260000 91062000 12477 219 12806 45108;45109;45110;45111;45112;45113;45114;45115 67944;67945;67946;67947;67948;67949;67950;67951;67952;67953;67954;67955;67956;67957;67958 67945 15 VDALNDEINFLR DVDAAYMSKVELEAKVDALNDEINFLRTLN EAKVDALNDEINFLRTLNETELTELQSQIS K V D L R T 1 1 2 2 0 0 1 0 0 1 2 0 0 1 0 0 0 0 0 1 0 0 12 0 1417.7201 CON__P08729;Q3KNV1;CON__Q3KNV1;P08729;B3KY79 CON__Q3KNV1 215 226 KRT7 Keratin, type II cytoskeletal 7 no no 2 9.7361E-20 188.91 4 2 0.27512 0.37694 4.193 2 Median 0.27512 0.37694 4.193 2 0 Median NaN NaN NaN 0 0 Median 155420000 100090000 55323000 117090000 100090000 16999000 38324000 0 38324000 + 12478 968;957 12807 45116;45117;45118;45119;45120;45121 67959;67960;67961;67962;67963;67964;67965;67966;67967 67960 9 VDALSPQLQQLACECYSR CGSLKGKLASFFLSRVDALSPQLQQLACEC LSPQLQQLACECYSRLPSLGAGFSQGLKHT R V D S R L 2 1 0 1 2 3 1 0 0 0 3 0 0 0 1 2 0 0 1 1 0 0 18 0 2136.9932 O15451;A8K548;C9JFV4;B4DR36;Q8IZL8;E7EV54;B4DEX7;I3L4P1 O15451 194 211 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes no 2 0.00082465 83.204 3 0.37552 0.48646 NaN 1 Median 0.37552 0.48646 NaN 1 0 Median NaN NaN NaN 0 0 Median 1365300 1102200 263030 1365300 1102200 263030 0 0 0 12479 613 12808 45122;45123;45124 67968;67969;67970;67971 67970 4 VDAVHADVYR AAGTLDASTKIYAVRVDAVHADVYRVLGGL IYAVRVDAVHADVYRVLGGLGKDAPSLEEV R V D Y R V 2 1 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 3 0 0 10 0 1143.5673 Q15003;B4DRG7;E9PHA2;A8K4T8;C9J470 Q15003 169 178 NCAPH Condensin complex subunit 2 yes no 2;3 1.7533E-05 117.01 8 2 0.7123 0.90213 6.8862 6 Plateau 0.66761 0.90787 7.3786 5 0 Median 0.56194 0.87482 NaN 1 0 Median 327270000 211730000 115540000 296480000 187360000 109120000 30791000 24372000 6419200 12480 1500 12809 45125;45126;45127;45128;45129;45130;45131;45132;45133;45134 67972;67973;67974;67975;67976;67977;67978;67979;67980;67981;67982;67983;67984;67985;67986;67987 67977 16 VDEAVAVLQAHQAK ELLHMLESPESLRSKVDEAVAVLQAHQAKE KVDEAVAVLQAHQAKEAAQKAVNSATGVPT K V D A K E 4 0 0 1 0 2 1 0 1 0 1 1 0 0 0 0 0 0 0 3 0 0 14 0 1477.7889 A0A087WTT1;A0A024R9C1;P11940;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;B3KT93;Q2VIP3;Q5VX58;Q3ZCS4;Q9H361;H0YC10;H0YAS7;L0R533;H0YAS6;H0YB75 A0A087WTT1 493 506 PABPC1;PABPC3;RLIM Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 2 0.00011655 77.662 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2053700 2053700 0 2053700 2053700 0 0 0 0 12481 217 12810 45135 67988 67988 1 VDEFNVSSPQFVGNLR HPRIIMLTCAFLACKVDEFNVSSPQFVGNL DEFNVSSPQFVGNLRESPLGQEKALEQILE K V D L R E 0 1 2 1 0 1 1 1 0 0 1 0 0 2 1 2 0 0 0 3 0 0 16 0 1806.8901 D6RHI7;D6RG18;Q59FW7;A8K6Q5;P51946 D6RHI7 41 56 CCNH Cyclin-H yes no 2 3.7294E-06 73.848 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12482 625 12811 45136;45137 67989;67990 67989 2 VDEFPLCGHMVSDEYEQLSSEALEAAR DAKIRIFDLGRKKAKVDEFPLCGHMVSDEY DEYEQLSSEALEAARICANKYMVKSCGKDG K V D A R I 3 1 0 2 1 1 5 1 1 0 3 0 1 1 1 3 0 0 1 2 0 0 27 0 3081.3696 P27635;X1WI28;X5D2T3;B8A6G2;X5D2W5;A6QRI9 P27635 43 69 RPL10 60S ribosomal protein L10 yes no 3 1.4346E-17 122.34 9 0.77862 1.0497 9.4873 8 Median 0.77862 1.0497 9.4873 8 0 Median NaN NaN NaN 0 0 Median 231070000 128220000 102850000 231070000 128220000 102850000 0 0 0 12483 1301 12812;12813 45138;45139;45140;45141;45142;45143;45144;45145;45146 67991;67992;67993;67994;67995;67996;67997;67998;67999;68000;68001;68002;68003;68004;68005;68006 68001 547 16 VDEIFGQLR FNAPVYLENKEQIGKVDEIFGQLRDFYFSV KEQIGKVDEIFGQLRDFYFSVKLSENMKAS K V D L R D 0 1 0 1 0 1 1 1 0 1 1 0 0 1 0 0 0 0 0 1 0 0 9 0 1075.5662 A0A024RDJ3;Q9NY12 A0A024RDJ3 113 121 NOLA1;GAR1 H/ACA ribonucleoprotein complex subunit 1 yes no 2 2.087E-18 187.55 5 2 0.69676 0.95097 3.8372 6 Median 0.71554 0.96908 3.9509 4 0 Median 0.60067 0.93356 3.4822 2 0 Median 179780000 101910000 77876000 132590000 72683000 59903000 47198000 29225000 17973000 12484 317 12814 45147;45148;45149;45150;45151;45152;45153 68007;68008;68009;68010;68011;68012;68013;68014;68015;68016;68017 68009 11 VDELTTEIK AAQEKQKTGTVMDTKVDELTTEIKELKETL TVMDTKVDELTTEIKELKETLEEKTKEADE K V D I K E 0 0 0 1 0 0 2 0 0 1 1 1 0 0 0 0 2 0 0 1 0 0 9 0 1046.5496 P49454 P49454 2932 2940 CENPF Centromere protein F yes yes 2 0.018831 56.729 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2973100 0 2973100 2973100 0 2973100 0 0 0 12485 1351 12815 45154 68018 68018 1 VDENFDCVEADDVEGK AGSLSTMFRVEYASKVDENFDCVEADDVEG DENFDCVEADDVEGKIRQIIPPGFCTNTND K V D G K I 1 0 1 4 1 0 3 1 0 0 0 1 0 1 0 0 0 0 0 3 0 0 16 0 1839.7469 O14929 O14929 95 110 HAT1 Histone acetyltransferase type B catalytic subunit yes yes 2 1.0942E-06 115.8 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12486 1171 12816 45155;45156 68019;68020 68019 2 VDEVGGEALGR AEEKAAVTSLFAKVKVDEVGGEALGRLLVV AKVKVDEVGGEALGRLLVVYPWTQRFFESF K V D G R L 1 1 0 1 0 0 2 3 0 0 1 0 0 0 0 0 0 0 0 2 0 0 11 0 1100.5462 CON__Q3SX09;CON__P02070 CON__Q3SX09 75 85 yes no 2 3.6097E-05 137.05 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 113310000 113310000 0 52612000 52612000 0 60696000 60696000 0 + 12487 969 12817 45157;45158;45159;45160;45161 68021;68022;68023;68024;68025 68021 5 VDEVPDGAVKPPTNK LIFAKMKGYPHWPARVDEVPDGAVKPPTNK VDEVPDGAVKPPTNKLPIFFFGTHETAFLG R V D N K L 1 0 1 2 0 0 1 1 0 0 0 2 0 0 3 0 1 0 0 3 0 0 15 1 1564.8097 O75475;Q05CM9;Q8N4N4 O75475 25 39 PSIP1 PC4 and SFRS1-interacting protein yes no 2;3 2.9973E-05 113.38 5 4 0.78052 0.98677 10.162 9 Median 0.89818 1.1078 8.2765 5 0 Median 0.58219 0.92434 3.3953 4 0 Median 162380000 94845000 67534000 76653000 41910000 34744000 85726000 52935000 32791000 12488 1201 12818 45162;45163;45164;45165;45166;45167;45168;45169;45170 68026;68027;68028;68029;68030;68031;68032;68033;68034;68035;68036;68037;68038;68039;68040 68032 15 VDFPTAIGMVVER SYTVRAGYAGEDCPKVDFPTAIGMVVERDD PKVDFPTAIGMVVERDDGSTLMEIDGDKGK K V D E R D 1 1 0 1 0 0 1 1 0 1 0 0 1 1 1 0 1 0 0 3 0 0 13 0 1432.7384 Q6FI97;Q53FS0;O96019;H7C5S0 Q6FI97 35 47 BAF53A;ACTL6A Actin-like protein 6A yes no 2 0.002011 48.568 1 1.0156 1.4406 NaN 1 Median NaN NaN NaN 0 0 Median 1.0156 1.4406 NaN 1 0 Median 12447000 6443500 6003300 0 0 0 12447000 6443500 6003300 12489 1227 12819 45171 68041 68041 467 1 VDFSPQPPYNYAVTASSR YKTPVQIKEFGAVSKVDFSPQPPYNYAVTA SPQPPYNYAVTASSRIHIYGRYSQEPIKTF K V D S R I 2 1 1 1 0 1 0 0 0 0 0 0 0 1 3 3 1 0 2 2 0 0 18 0 1997.9483 Q8TED0;H0Y8P4;D6RF65 Q8TED0 44 61 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 0.00013801 90.707 3 1 0.74869 1.0769 20.942 4 Median 0.8234 1.0977 25.646 3 0 Median 0.68076 1.0565 NaN 1 0 Median 80446000 46852000 33594000 50951000 28556000 22395000 29496000 18296000 11199000 12490 1660 12820 45172;45173;45174;45175 68042;68043;68044;68045;68046;68047 68044 6 VDFVIPK VPSKNQNDPLPGRIKVDFVIPKELPFGDKD DPLPGRIKVDFVIPKELPFGDKDTKSKVTL K V D P K E 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 2 0 0 7 0 816.47454 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0 Q9GZV0 258 264 CSDE1;UNR Cold shock domain-containing protein E1 yes no 2 0.038862 55.441 1 0.39085 0.49622 NaN 1 Median 0.39085 0.49622 NaN 1 0 Median NaN NaN NaN 0 0 Median 10207000 7656200 2550400 10207000 7656200 2550400 0 0 0 12491 31 12821 45176 68048 68048 1 VDGTCPEVIK SGMTMDTESEIDPCKVDGTCPEVIKVYIFK IDPCKVDGTCPEVIKVYIFKADPGEDDLGG K V D I K V 0 0 0 1 1 0 1 1 0 1 0 1 0 0 1 0 1 0 0 2 0 0 10 0 1116.5485 A0A024RC04;B7ZKJ5;P17010;Q8NHZ3;Q8NHZ4;Q8NHZ5;Q8NHZ2;Q59EB9 A0A024RC04 243 252 ZFX Zinc finger X-chromosomal protein yes no 2 0.035269 40.724 1 0.67297 0.84825 NaN 1 Median 0.67297 0.84825 NaN 1 0 Median NaN NaN NaN 0 0 Median 2380300 1477100 903230 2380300 1477100 903230 0 0 0 12492 286 12822 45177 68049 68049 1 VDIETPNLEGTLTGPR QGDVKGPQVALKGSRVDIETPNLEGTLTGP DIETPNLEGTLTGPRLGSPSGKTGTCRISM R V D P R L 0 1 1 1 0 0 2 2 0 1 2 0 0 0 2 0 3 0 0 1 0 0 16 0 1710.8788 Q09666;B4DTV0 Q09666 541 556 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.00011257 96.067 2 1 0.54716 0.76658 NaN 1 Median 0.54716 0.76658 NaN 1 0 Median NaN NaN NaN 0 0 Median 8698600 900180 7798400 1347900 900180 447740 7350700 0 7350700 12493 1453 12823 45178;45179;45180 68050;68051;68052;68053;68054 68053 5 VDIGDTIIYLVH DLMSKKIHLTENGIRVDIGDTIIYLVH___ GIRVDIGDTIIYLVH_______________ R V D V H - 0 0 0 2 0 0 0 1 1 3 1 0 0 0 0 0 1 0 1 2 0 0 12 0 1356.7289 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3;Q9NPU8;Q9HAM7;B3KXA9 B4E266 1119 1130 LARS;DKFZp762P233 Leucine--tRNA ligase, cytoplasmic yes no 2 0.00067886 148.99 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32999000 0 0 32999000 0 0 0 0 0 12494 732 12824 45181;45182;45183;45184 68055;68056;68057;68058 68057 4 VDILDPALLR FQPNTQVKVIAATNRVDILDPALLRSGRLD AATNRVDILDPALLRSGRLDR_________ R V D L R S 1 1 0 2 0 0 0 0 0 1 3 0 0 0 1 0 0 0 0 1 0 0 10 0 1123.6601 E9PKD5;E9PM69;R4GNH3;A8K781;A0A140VK42;P17980 E9PKD5 296 305 PSMC3 26S protease regulatory subunit 6A yes no 2 0.019093 75.378 3 0.4828 0.66105 15.117 3 Plateau 0.4828 0.66105 15.117 3 0 Plateau NaN NaN NaN 0 0 Median 19005000 12519000 6486400 19005000 12519000 6486400 0 0 0 12495 507 12825 45185;45186;45187 68059;68060;68061 68060 3 VDILYNNIK AHVNGFRFTSVRGDKVDILYNNIKHALFQP SVRGDKVDILYNNIKHALFQPCDGEMIIVL K V D I K H 0 0 2 1 0 0 0 0 0 2 1 1 0 0 0 0 0 0 1 1 0 0 9 0 1090.6023 Q9Y5B9 Q9Y5B9 697 705 SUPT16H FACT complex subunit SPT16 yes yes 2 0.00033523 120.62 4 2 0.74987 0.96282 11.171 5 Median 0.7625 0.95335 6.6569 4 0 Median 0.7341 1.1823 NaN 1 0 Median 233130000 141780000 91346000 177650000 102720000 74930000 55471000 39055000 16416000 12496 1829 12826 45188;45189;45190;45191;45192;45193 68062;68063;68064;68065;68066;68067;68068;68069;68070;68071 68067 10 VDIQTEDLEDGTCK AGYGGISLAVEGPSKVDIQTEDLEDGTCKV KVDIQTEDLEDGTCKVSYFPTVPGVYIVST K V D C K V 0 0 0 3 1 1 2 1 0 1 1 1 0 0 0 0 2 0 0 1 0 0 14 0 1621.7141 O75369;A0A024R321;Q68CT4;E7EN95;H7C5L4 O75369 2045 2058 FLNB;DKFZp686A1668 Filamin-B yes no 2 1.4924E-27 181.66 4 0.593 0.75084 NaN 1 Median 0.593 0.75084 NaN 1 0 Median NaN NaN NaN 0 0 Median 10690000 8377000 2313400 10690000 8377000 2313400 0 0 0 12497 1199 12827 45194;45195;45196;45197 68072;68073;68074;68075;68076 68072 5 VDLAVTRDEAAK ENEAGGLKLDGRQLKVDLAVTRDEAAKLQT QLKVDLAVTRDEAAKLQTTKVKKPTGTRNL K V D A K L 3 1 0 2 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 12 1 1286.683 A0A024R753;Q9NW13 A0A024R753 414 425 RBM28 RNA-binding protein 28 yes no 2 8.9596E-07 122.33 3 0.72246 0.9253 32.067 2 Median 0.72246 0.9253 32.067 2 0 Median NaN NaN NaN 0 0 Median 16359000 8383900 7975000 16359000 8383900 7975000 0 0 0 12498 169 12828 45198;45199;45200 68077;68078;68079;68080;68081 68081 5 VDLGGFAGLFDLK KIQPLAKATSRSGCKVDLGGFAGLFDLKAA CKVDLGGFAGLFDLKAAGFKDPLLASGTDG K V D L K A 1 0 0 2 0 0 0 3 0 0 3 1 0 2 0 0 0 0 0 1 0 0 13 0 1350.7184 Q3B7A7;Q59HH3;P22102;B4DJ93;O14660;Q71VH3 Q3B7A7 468 480 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 1.9342E-07 147.91 5 0.25535 0.33161 NaN 1 Median 0.25535 0.33161 NaN 1 0 Median NaN NaN NaN 0 0 Median 33153000 31374000 1779300 33153000 31374000 1779300 0 0 0 12499 1289 12829 45201;45202;45203;45204;45205 68082;68083;68084;68085;68086;68087 68084 6 VDLLGEFQSALPK LTPAPSKKADSVAAKVDLLGEFQSALPKIN AKVDLLGEFQSALPKINSHPTRSQKKSSQK K V D P K I 1 0 0 1 0 1 1 1 0 0 3 1 0 1 1 1 0 0 0 1 0 0 13 0 1415.766 Q9H9L3 Q9H9L3 116 128 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 2 6.5854E-05 122.42 3 1.5354 1.9884 7.8261 3 Median 1.5354 1.9884 7.8261 3 0 Median NaN NaN NaN 0 0 Median 37242000 13701000 23541000 37242000 13701000 23541000 0 0 0 12500 1746 12830 45206;45207;45208 68088;68089;68090;68091 68088 4 VDLLNQEIEFLK DVDNAYMIKVELQSKVDLLNQEIEFLKVLY QSKVDLLNQEIEFLKVLYDAEISQIHQSVT K V D L K V 0 0 1 1 0 1 2 0 0 1 3 1 0 1 0 0 0 0 0 1 0 0 12 0 1459.7922 CON__P35908;P35908 CON__P35908 309 320 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2 1.697E-33 188.99 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 309740000 309740000 0 104080000 104080000 0 205660000 205660000 0 + 12501 964 12831 45209;45210;45211;45212;45213 68092;68093;68094;68095;68096 68092 5 VDLNEEETILIIR FEQWFNAPFAMTGEKVDLNEEETILIIRRL EKVDLNEEETILIIRRLHKVLRPFLLRRLK K V D I R R 0 1 1 1 0 0 3 0 0 3 2 0 0 0 0 0 1 0 0 1 0 0 13 0 1555.8457 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;Q59FZ6;B4E0F1;B4DSI8;B3KNW7;A0A0U1RQE1;P51531;A0A0U1RQZ9;B4DK35;B4DSC8 A7E2E1 954 966 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 5.979E-23 185.96 4 1 0.62318 1.8201 39.696 5 Linear 0.58209 0.86168 7.9603 4 0 Linear 1.1742 1.8716 NaN 1 0 Median 116030000 67286000 48739000 62659000 41354000 21305000 53367000 25932000 27435000 12502 403;1362 12832 45214;45215;45216;45217;45218 68097;68098;68099;68100;68101;68102;68103;68104;68105 68100 9 VDLQSLPTR VENEKINAEKSSKQKVDLQSLPTRAYLDQT KSSKQKVDLQSLPTRAYLDQTVVPILLQGL K V D T R A 0 1 0 1 0 1 0 0 0 0 2 0 0 0 1 1 1 0 0 1 0 0 9 0 1027.5662 Q9C005;B4DIS3 Q9C005 46 54 DPY30;LOC84661 Protein dpy-30 homolog yes no 2 0.0037918 103.56 4 0.58702 0.78107 9.5814 3 Median 0.58702 0.78107 9.5814 3 0 Median NaN NaN NaN 0 0 Median 43518000 27994000 15524000 43518000 27994000 15524000 0 0 0 12503 1728 12833 45219;45220;45221;45222 68106;68107;68108;68109;68110;68111;68112 68112 7 VDLVLLGK LQVARVLAKLAEKEKVDLVLLGKQAIDDDC KLAEKEKVDLVLLGKQAIDDDCNQTGQMTA K V D G K Q 0 0 0 1 0 0 0 1 0 0 3 1 0 0 0 0 0 0 0 2 0 0 8 0 855.54295 P38117 P38117 117 124 ETFB Electron transfer flavoprotein subunit beta yes yes 2 0.036486 89.369 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12504 1327 12834 45223 68113 68113 1 VDMKEEPLAVSK TSRSSKQRLKIPLVKVDMKEEPLAVSKLTR LVKVDMKEEPLAVSKLTRTSGETTQTHTEP K V D S K L 1 0 0 1 0 0 2 0 0 0 1 2 1 0 1 1 0 0 0 2 0 0 12 1 1344.6959 P46013 P46013 2489 2500 MKI67 Antigen KI-67 yes yes 2;3 4.9867E-06 100.38 4 0.97918 1.5838 3.6935 4 Median NaN NaN NaN 0 0 Median 0.97918 1.5838 3.6935 4 0 Median 171670000 88219000 83447000 0 0 0 171670000 88219000 83447000 12505 1342 12835 45224;45225;45226;45227 68114;68115;68116;68117;68118;68119 68116 583 6 VDNDENEHQLSLR LFGCELKADKDYHFKVDNDENEHQLSLRTV FKVDNDENEHQLSLRTVSLGAGAKDELHIV K V D L R T 0 1 2 2 0 1 2 0 1 0 2 0 0 0 0 1 0 0 0 1 0 0 13 0 1567.7227 A0A0S2Z4G7;A0A0S2Z491;P06748;A0A140VJQ2;A4ZU86;E5RGW4 A0A0S2Z4G7 33 45 NPM1 Nucleophosmin yes no 2;3 1.6953E-108 280.21 8 6 0.5985 0.82979 30.474 14 Median 0.58183 0.79674 5.6401 8 0 Median 0.85803 1.3951 4.3436 6 0 Median 2897400000 1797700000 1099800000 2409900000 1533200000 876680000 487520000 264430000 223100000 12506 462 12836 45228;45229;45230;45231;45232;45233;45234;45235;45236;45237;45238;45239;45240;45241 68120;68121;68122;68123;68124;68125;68126;68127;68128;68129;68130;68131;68132;68133;68134;68135;68136;68137;68138;68139;68140;68141;68142;68143;68144;68145;68146;68147;68148;68149 68124 30 VDNIQAGELTEGIWR LSRQGIIFKNSKTGKVDNIQAGELTEGIWR VDNIQAGELTEGIWRRVALGHGLKLLTKNG K V D W R R 1 1 1 1 0 1 2 2 0 2 1 0 0 0 0 0 1 1 0 1 0 0 15 0 1699.8529 A0A024R4Z6;Q08945;Q59GH7 A0A024R4Z6 40 54 SSRP1 FACT complex subunit SSRP1 yes no 2 7.7653E-08 94.122 2 0.72799 1.1855 4.441 2 Median NaN NaN NaN 0 0 Median 0.72799 1.1855 4.441 2 0 Median 150770000 88554000 62215000 0 0 0 150770000 88554000 62215000 12507 132 12837 45242;45243 68150;68151;68152;68153 68150 4 VDNMIIQSISLLDQLDK GHSYSRAKVKFNVNRVDNMIIQSISLLDQL NMIIQSISLLDQLDKDINTFSMRVREWYGY R V D D K D 0 0 1 3 0 2 0 0 0 3 3 1 1 0 0 2 0 0 0 1 0 0 17 0 1944.0238 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 164 180 NOP56 Nucleolar protein 56 yes no 2 5.7242E-07 75.316 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5884200 5884200 0 0 0 0 5884200 5884200 0 12508 647 12838 45244 68154 68154 228 1 VDPALGEFPFAK RCGSTEHEITKCKAKVDPALGEFPFAKCFV KAKVDPALGEFPFAKCFVCGEMGHLSRSCP K V D A K C 2 0 0 1 0 0 1 1 0 0 1 1 0 2 2 0 0 0 0 1 0 0 12 0 1289.6656 A0A024RAL5;Q8N567 A0A024RAL5 174 185 ZCCHC9 Zinc finger CCHC domain-containing protein 9 yes no 2 0.043876 32.523 1 0.84468 1.162 NaN 1 Median NaN NaN NaN 0 0 Median 0.84468 1.162 NaN 1 0 Median 5094100 2677100 2417000 0 0 0 5094100 2677100 2417000 12509 245 12839 45245 68155 68155 1 VDPEDTNLNQDSAK YDDNFNVNGPGEGVKVDPEDTNLNQDSAKE KVDPEDTNLNQDSAKELEDSPQENVSVTEI K V D A K E 1 0 2 3 0 1 1 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 14 0 1544.6954 Q5F1R6 Q5F1R6 412 425 DNAJC21 DnaJ homolog subfamily C member 21 yes yes 2 0.0031605 43.382 2 0.42035 0.62778 7.9575 2 Median NaN NaN NaN 0 0 Median 0.42035 0.62778 7.9575 2 0 Median 18021000 12828000 5193000 0 0 0 18021000 12828000 5193000 12510 1556 12840 45246;45247 68156;68157 68157 2 VDPEIQNVK EVSVNQSLLQPLNVKVDPEIQNVKAQEREQ QPLNVKVDPEIQNVKAQEREQIKTLNNKFA K V D V K A 0 0 1 1 0 1 1 0 0 1 0 1 0 0 1 0 0 0 0 2 0 0 9 0 1040.5502 CON__P35908;P35908 CON__P35908 173 181 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 0.0042481 115.49 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88989000 88989000 0 73481000 73481000 0 15508000 15508000 0 + 12511 964 12841 45248;45249;45250 68158;68159;68160 68158 3 VDPLFTELLNGIR KAADALGKLISIHIKVDPLFTELLNGIRAM IKVDPLFTELLNGIRAMEDPGVRDTMLQAL K V D I R A 0 1 1 1 0 0 1 1 0 1 3 0 0 1 1 0 1 0 0 1 0 0 13 0 1485.8191 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2381 2393 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 2.2159E-08 138.25 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3280800 3280800 0 3280800 3280800 0 0 0 0 12512 1000 12842 45251;45252;45253 68161;68162;68163 68162 3 VDPMAIVVFHQADIGEYVR LGFGVAAKSTQDCRKVDPMAIVVFHQADIG AIVVFHQADIGEYVRHEETLT_________ K V D V R H 2 1 0 2 0 1 1 1 1 2 0 0 1 1 1 0 0 0 1 4 0 0 19 0 2158.0881 Q9Y221;B3KM49 Q9Y221 156 174 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog yes no 3 2.3831E-07 103.87 2 1 0.51075 0.80159 36.197 3 Median 0.56864 0.76359 51.036 2 0 Median 0.51075 0.80159 NaN 1 0 Median 33058000 21606000 11452000 9042300 5005700 4036500 24016000 16601000 7415400 12513 1800 12843 45254;45255;45256 68164;68165;68166;68167 68166 830 4 VDPTYGLESSCIAGTGPDEPEKLEGAEEEK AHVKKVQEAARASGKVDPTYGLESSCIAGT GPDEPEKLEGAEEEKMEADPDGQQPEKAEN K V D E K M 2 0 0 2 1 0 7 4 0 1 2 2 0 0 3 2 2 0 1 1 0 0 30 1 3206.4449 Q58EY4;Q92922;Q05CR1;Q05BW5 Q58EY4 751 780 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 3 0.0004041 29.736 1 0.5848 0.71543 NaN 1 Median 0.5848 0.71543 NaN 1 0 Median NaN NaN NaN 0 0 Median 6864100 4026000 2838100 6864100 4026000 2838100 0 0 0 12514 1549 12844 45257 68168;68169 68169 2 VDSIQFSNTSNR GQPEKISELEFHTDKVDSIQFSNTSNRFVS TDKVDSIQFSNTSNRFVSGSRDGTARIWQF K V D N R F 0 1 2 1 0 1 0 0 0 1 0 0 0 1 0 3 1 0 0 1 0 0 12 0 1366.6477 Q8WWQ0 Q8WWQ0 368 379 PHIP PH-interacting protein yes yes 2 6.445E-25 199.33 5 2 0.86511 1.2506 6.5722 6 Median 0.89767 1.2132 4.0122 4 0 Median 0.84358 1.3535 0.8032 2 0 Median 216340000 113010000 103330000 127890000 64457000 63437000 88448000 48557000 39891000 12515 1668 12845 45258;45259;45260;45261;45262;45263;45264 68170;68171;68172;68173;68174;68175;68176;68177;68178 68171 9 VDSLEFSLESQK EADQSPKNSAILQNRVDSLEFSLESQKQMN QNRVDSLEFSLESQKQMNSDLQKQCEELVQ R V D Q K Q 0 0 0 1 0 1 2 0 0 0 2 1 0 1 0 3 0 0 0 1 0 0 12 0 1380.6773 P49454 P49454 832 843 CENPF Centromere protein F yes yes 2 2.9997E-07 141.91 4 2 1.1572 1.6053 25.157 4 Median 1.0491 1.3209 27.489 2 0 Median 1.2018 1.7874 15.107 2 0 Median 29908000 12648000 17260000 15812000 6314800 9497500 14096000 6332800 7762800 12516 1351 12846 45265;45266;45267;45268;45269;45270 68179;68180;68181;68182;68183;68184;68185;68186 68179 8 VDSLLENLEK DLQAIKKELTQIKQKVDSLLENLEKIEKEQ QIKQKVDSLLENLEKIEKEQSKQAVEMKND K V D E K I 0 0 1 1 0 0 2 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 10 0 1158.6132 B2R5W2;G3V4C1;G3V4W0;B4DY08;B2R603;G3V2Q1;P07910;G3V576;A8K9A4;G3V2D6;B4DQQ2;Q6PKD2;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8 B2R5W2 194 203 HNRNPC;HNRPCL1;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 no no 2 1.6407E-18 200.86 4 2 0.63099 0.826 27.524 6 Median 0.62084 0.82023 4.3293 4 0 Median 0.85821 1.3681 0.033579 2 0 Median 1135000000 695690000 439340000 1016400000 633220000 383130000 118680000 62471000 56209000 12517 694 12847 45271;45272;45273;45274;45275;45276 68187;68188;68189;68190;68191;68192;68193;68194;68195;68196;68197 68190 11 VDSQASITQDSDSIK RPALMVSIDLHQTGRVDSQASITQDSDSIK VDSQASITQDSDSIKKPEEIKQCSDAPVSV R V D I K K 1 0 0 3 0 2 0 0 0 2 0 1 0 0 0 4 1 0 0 1 0 0 15 0 1592.753 Q6IEH8;Q6KC79;A8K2T2;A6QL62 Q6IEH8 551 565 NIPBL Nipped-B-like protein yes no 2 0.029545 28.624 2 0.51836 0.73928 13.372 2 Median NaN NaN NaN 0 0 Median 0.51836 0.73928 13.372 2 0 Median 12374000 7557300 4816600 0 0 0 12374000 7557300 4816600 12518 1586 12848 45277;45278 68198;68199;68200 68199 3 VDSTTCLFPVEEK GERGKDKKGSCNLSRVDSTTCLFPVEEKAV SRVDSTTCLFPVEEKAVEYYFASDASAVIE R V D E K A 0 0 0 1 1 0 2 0 0 0 1 1 0 1 1 1 2 0 0 2 0 0 13 0 1523.7178 Q06210 Q06210 259 271 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 0.0016393 91.961 4 0.96699 1.3934 12.587 4 Linear 0.96699 1.3934 12.587 4 0 Linear NaN NaN NaN 0 0 Median 27429000 15002000 12427000 27429000 15002000 12427000 0 0 0 12519 1445 12849 45279;45280;45281;45282 68201;68202;68203;68204;68205 68202 5 VDTGPREDLIK MEKHHVPSDFNVNVKVDTGPREDLIKVLED VNVKVDTGPREDLIKVLEDMRQEYELIIKK K V D I K V 0 1 0 2 0 0 1 1 0 1 1 1 0 0 1 0 1 0 0 1 0 0 11 1 1241.6616 B2RBC7;Q8TC04;CON__Q9C075;A0A024R1X9;Q9C075 B2RBC7 16 26 KRT23 Keratin, type I cytoskeletal 23 yes no 2;3 0.0024293 78.334 3 3 0.53928 0.7905 21.798 6 Median 0.75485 1.0137 20.616 3 0 Median 0.47925 0.76023 4.4246 3 0 Plateau 62665000 39647000 23018000 21285000 12217000 9067200 41380000 27430000 13950000 + 12520 74 12850 45283;45284;45285;45286;45287;45288 68206;68207;68208;68209;68210;68211 68211 6 VDTLPYVPEPIK ANLPSAVTSDQKSQKVDTLPYVPEPIKVAI SQKVDTLPYVPEPIKVAIAENLLDVIKDTR K V D I K V 0 0 0 1 0 0 1 0 0 1 1 1 0 0 3 0 1 0 1 2 0 0 12 0 1369.7493 Q8WYP5;B3KVE5;B3KTD2;B3KRD0 Q8WYP5 1654 1665 AHCTF1 Protein ELYS yes no 2 2.2211E-07 119.53 4 2 0.74672 0.92876 4.6065 5 Median 0.75922 0.93149 3.5337 3 0 Median 0.56644 0.89471 5.2824 2 0 Median 183910000 107830000 76085000 114490000 65082000 49403000 69425000 42743000 26682000 12521 1670 12851 45289;45290;45291;45292;45293;45294 68212;68213;68214;68215;68216;68217;68218;68219;68220;68221 68219 10 VDVAVNCAGIAVASK DVQTALALAKGKFGRVDVAVNCAGIAVASK VDVAVNCAGIAVASKTYNLKKGQTHTLEDF R V D S K T 4 0 1 1 1 0 0 1 0 1 0 1 0 0 0 1 0 0 0 4 0 0 15 0 1472.7657 A0A0S2Z410;Q99714;Q5H928;A0A0S2Z434 A0A0S2Z410 85 99 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2 1.4723E-14 153 4 0.30104 0.37782 7.3434 4 Linear 0.30104 0.37782 7.3434 4 0 Linear NaN NaN NaN 0 0 Median 56026000 43823000 12203000 56026000 43823000 12203000 0 0 0 12522 458 12852 45295;45296;45297;45298 68222;68223;68224;68225;68226;68227;68228 68224 7 VDVEALENSAGATYIR ALSKHLPSSDSMSLKVDVEALENSAGATYI DVEALENSAGATYIRKKGGKVTGDSQPKEQ K V D I R K 3 1 1 1 0 0 2 1 0 1 1 0 0 0 0 1 1 0 1 2 0 0 16 0 1706.8475 V9HWK0;O76094;Q86X80;A0PJJ5;Q71V07;Q0D2M6;D6RDY6;O15302 V9HWK0 516 531 HEL103;SRP72 Signal recognition particle subunit SRP72 yes no 2 3.7389E-06 130.15 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3930800 3930800 0 3930800 3930800 0 0 0 0 12523 1211 12853 45299;45300 68229;68230;68231 68230 3 VDVEEEFFALR TPTSSKPQSKRSLRKVDVEEEFFALRKRTP SLRKVDVEEEFFALRKRTPSAGKAMHTPKP K V D L R K 1 1 0 1 0 0 3 0 0 0 1 0 0 2 0 0 0 0 0 2 0 0 11 0 1352.6612 P46013 P46013 1518 1528 MKI67 Antigen KI-67 yes yes 2 0.00011615 99.013 1 2 0.86986 1.3644 33.772 3 Median 0.59334 0.7954 NaN 1 0 Median 0.90098 1.4215 5.7978 2 0 Median 80673000 42672000 38001000 13951000 8616300 5334800 66722000 34055000 32666000 12524 1342 12854 45301;45302;45303 68232;68233;68234;68235;68236 68233 4 VDVEEEFFALRK TPTSSKPQSKRSLRKVDVEEEFFALRKRTP LRKVDVEEEFFALRKRTPSAGKAMHTPKPA K V D R K R 1 1 0 1 0 0 3 0 0 0 1 1 0 2 0 0 0 0 0 2 0 0 12 1 1480.7562 P46013 P46013 1518 1529 MKI67 Antigen KI-67 yes yes 2;3 1.7015E-08 108.47 4 1.1306 1.9456 5.6577 4 Median NaN NaN NaN 0 0 Median 1.1306 1.9456 5.6577 4 0 Median 183010000 77307000 105700000 0 0 0 183010000 77307000 105700000 12525 1342 12855 45304;45305;45306;45307 68237;68238;68239;68240;68241;68242 68240 6 VDVGGSEPASLSYLSFEGATK HVIGIVTAKSGDIFKVDVGGSEPASLSYLS EPASLSYLSFEGATKRNRPNVQVGDLIYGQ K V D T K R 2 0 0 1 0 0 2 3 0 0 2 1 0 1 1 4 1 0 1 2 0 0 21 0 2113.0215 Q9NQT5;Q9NYS3 Q9NQT5 131 151 EXOSC3;PNAS-3 Exosome complex component RRP40 yes no 2 1.1181E-26 152.34 4 1 0.66793 0.8566 7.8113 5 Median 0.67545 0.85774 3.327 4 0 Median 0.49001 0.73692 NaN 1 0 Median 50499000 29432000 21068000 37188000 20496000 16692000 13311000 8935500 4375600 12526 1754 12856 45308;45309;45310;45311;45312 68243;68244;68245;68246;68247;68248;68249;68250;68251;68252;68253 68244 11 VDVGKDQEFTVK SLDLSKIKVSGLGEKVDVGKDQEFTVKSKG GEKVDVGKDQEFTVKSKGAGGQGKVASKIV K V D V K S 0 0 0 2 0 1 1 1 0 0 0 2 0 1 0 0 1 0 0 3 0 0 12 1 1363.6983 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 983 994 FLNA Filamin-A yes no 2 0.0026095 119.03 2 0.50369 0.61936 NaN 1 Median 0.50369 0.61936 NaN 1 0 Median NaN NaN NaN 0 0 Median 9647700 6034700 3613000 9647700 6034700 3613000 0 0 0 12527 1287 12857 45313;45314 68254;68255;68256 68255 3 VEAFDNEFEATQK LPHKLRIKAKAMQIKVEAFDNEFEATQKLS IKVEAFDNEFEATQKLSSPIDMTSKRHFEL K V E Q K L 2 0 1 1 0 1 3 0 0 0 0 1 0 2 0 0 1 0 0 1 0 0 13 0 1526.6889 D9IVD5;A0A024R241;Q16649 D9IVD5 338 350 NFIL3 Nuclear factor interleukin-3-regulated protein yes no 2 0.011541 84.289 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 914440 914440 0 914440 914440 0 0 0 0 12528 79 12858 45315 68257 68257 1 VEAGDVIYIEANSGAVK LKLDPSIFESLQKERVEAGDVIYIEANSGA AGDVIYIEANSGAVKRQGRCDTYATEFDLE R V E V K R 3 0 1 1 0 0 2 2 0 2 0 1 0 0 0 1 0 0 1 3 0 0 17 0 1733.8836 B5BUB1;Q9Y265;E7ETR0;B3KRS7;H7C4I3 B5BUB1 185 201 RUVBL1 RuvB-like 1 yes no 2 0.0010488 55.04 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5173400 5173400 0 0 0 0 5173400 5173400 0 12529 896 12859 45316 68258 68258 1 VEAIDVEEAK IRLAEAHAKVRLSNKVEAIDVEEAKRLHRE RLSNKVEAIDVEEAKRLHREALKQSATDPR K V E A K R 2 0 0 1 0 0 3 0 0 1 0 1 0 0 0 0 0 0 0 2 0 0 10 0 1101.5554 B4DLA6;B3KMX0;A0A024R7U6;P33991 B4DLA6 713 722 MCM4 DNA replication licensing factor MCM4 yes no 2 0.00038294 95.523 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3972400 3972400 0 3972400 3972400 0 0 0 0 12530 185 12860 45317 68259 68259 1 VEALTKEELEFEVPFR MRHKLKTAFKNFIEKVEALTKEELEFEVPF EALTKEELEFEVPFRDLGFNGAPYRSTCLL K V E F R D 1 1 0 0 0 0 5 0 0 0 2 1 0 2 1 0 1 0 0 2 0 0 16 1 1934.9989 Q9Y5B9 Q9Y5B9 787 802 SUPT16H FACT complex subunit SPT16 yes yes 2;3 3.4852E-37 133.71 5 2 0.73049 1.0213 6.7045 6 Median 0.7504 0.99526 4.5286 4 0 Median 0.64613 1.0923 7.8651 2 0 Median 348470000 197070000 151400000 290450000 160700000 129750000 58027000 36373000 21654000 12531 1829 12861 45318;45319;45320;45321;45322;45323;45324 68260;68261;68262;68263;68264;68265;68266;68267;68268;68269;68270;68271;68272 68267 13 VEALTKEELEFEVPFRDLGFNGAPYR MRHKLKTAFKNFIEKVEALTKEELEFEVPF EVPFRDLGFNGAPYRSTCLLQPTSSALVNA K V E Y R S 2 2 1 1 0 0 5 2 0 0 3 1 0 3 2 0 1 0 1 2 0 0 26 2 3025.5185 Q9Y5B9 Q9Y5B9 787 812 SUPT16H FACT complex subunit SPT16 yes yes 4 0.035593 11.592 1 0.55818 0.69003 NaN 1 Median 0.55818 0.69003 NaN 1 0 Median NaN NaN NaN 0 0 Median 11104000 5722800 5381500 11104000 5722800 5381500 0 0 0 12532 1829 12862 45325 68273 68273 1 VEAPEYIPISDDPK MESSPRKGSKKKPVKVEAPEYIPISDDPKA KVEAPEYIPISDDPKASAKKKMKSKKKVEQ K V E P K A 1 0 0 2 0 0 2 0 0 2 0 1 0 0 3 1 0 0 1 1 0 0 14 0 1571.7719 Q1ED39;H3BPL4 Q1ED39 250 263 KNOP1 Lysine-rich nucleolar protein 1 yes no 2 0.0057613 77.305 3 1 1.1609 1.4719 28.195 4 Median 1.3744 1.7084 29.272 3 0 Median 0.85428 1.2622 NaN 1 0 Median 23513000 11002000 12511000 13928000 6071900 7856000 9585100 4930000 4655100 12533 1525 12863 45326;45327;45328;45329 68274;68275;68276;68277;68278 68275 5 VEAQLQELQVK VLLQGKGDSEHKRKKVEAQLQELQVKFNEG KRKKVEAQLQELQVKFNEGERVRTELADKV K V E V K F 1 0 0 0 0 3 2 0 0 0 2 1 0 0 0 0 0 0 0 2 0 0 11 0 1283.7085 A0A024R1N1;P35579;Q86XU5;A0A0U4BW16 A0A024R1N1 1250 1260 MYH9 Myosin-9 no no 2 7.6946E-17 182.46 4 2 1.1013 1.4112 63.293 5 Median 1.0803 1.3693 8.4265 4 0 Median 3.7013 5.6018 NaN 1 0 Median 239400000 96635000 142760000 211700000 93682000 118020000 27695000 2952700 24742000 12534 61;490 12864 45330;45331;45332;45333;45334;45335 68279;68280;68281;68282;68283;68284;68285;68286;68287;68288 68282 9 VEAQVYILSK GLVMVKPGSIKPHQKVEAQVYILSKEEGGR KPHQKVEAQVYILSKEEGGRHKPFVSHFMP K V E S K E 1 0 0 0 0 1 1 0 0 1 1 1 0 0 0 1 0 0 1 2 0 0 10 0 1148.6441 P49411 P49411 352 361 TUFM Elongation factor Tu, mitochondrial yes yes 2 0.00023247 125.97 3 1 0.38413 0.48022 17.15 3 Median 0.38413 0.48022 17.15 3 0 Median NaN NaN NaN 0 0 Median 64735000 38561000 26174000 53754000 38561000 15193000 10981000 0 10981000 12535 1350 12865 45336;45337;45338;45339 68289;68290;68291;68292;68293;68294;68295;68296 68290 8 VEDAADSATKPENLSSK LTPRKLSTRNRTPAKVEDAADSATKPENLS DAADSATKPENLSSKTRGSIPTDVEVLPTE K V E S K T 3 0 1 2 0 0 2 0 0 0 1 2 0 0 1 3 1 0 0 1 0 0 17 1 1760.8428 P46013;Q70L74 P46013 405 421 MKI67 Antigen KI-67 yes no 2;3 5.119E-84 224.34 7 5 1.0354 1.3038 21.353 12 Median 0.91797 1.122 8.4412 7 0 Median 1.0516 1.6904 4.9361 5 0 Median 629010000 312510000 316500000 350800000 175800000 174990000 278210000 136710000 141500000 12536 1342 12866 45340;45341;45342;45343;45344;45345;45346;45347;45348;45349;45350;45351 68297;68298;68299;68300;68301;68302;68303;68304;68305;68306;68307;68308;68309;68310;68311;68312;68313;68314;68315;68316 68297 20 VEDFTQNPR RNLPLKLLIMSATLRVEDFTQNPRLFAKPP MSATLRVEDFTQNPRLFAKPPPVIKVESRQ R V E P R L 0 1 1 1 0 1 1 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 9 0 1104.52 Q8IY37;F5H3Y4 Q8IY37 413 421 DHX37 Probable ATP-dependent RNA helicase DHX37 yes no 2 0.0017674 93.429 2 2 0.48169 0.68141 55.58 3 Median 1.22 1.599 NaN 1 0 Median 0.4271 0.61941 13.491 2 0 Median 22406000 13632000 8774000 8490300 3781000 4709300 13915000 9850800 4064700 12537 1627 12867 45352;45353;45354;45355 68317;68318;68319;68320 68320 4 VEDLFLTFAK ARKKKLLEAQSHFRKVEDLFLTFAKKASAF SHFRKVEDLFLTFAKKASAFNSWFENAEED K V E A K K 1 0 0 1 0 0 1 0 0 0 2 1 0 2 0 0 1 0 0 1 0 0 10 0 1181.6332 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;Q9UG16 Q13813 2089 2098 SPTAN1;DKFZp564P0562 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.030417 70.908 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 633190 0 633190 633190 0 633190 0 0 0 12538 1476 12868 45356;45357 68321;68322 68322 2 VEDMAELTCLNEASVLHNLK NKDDIQKMNPPKFSKVEDMAELTCLNEASV ELTCLNEASVLHNLKERYYSGLIYTYSGLF K V E L K E 2 0 2 1 1 0 3 0 1 0 4 1 1 0 0 1 1 0 0 2 0 0 20 0 2285.1032 A0A024R1N1;P35579;Q86XU5;B4E3S1;Q5BKV1;B1AH99;E7ERA5;G1UI33;A0A0U4BW16;P35580 A0A024R1N1 83 102 MYH9;MYH10 Myosin-9;Myosin-10 no no 3 9.6756E-20 142.94 3 1 0.96792 1.2001 87.644 4 Median 0.92317 1.1219 7.8167 3 0 Median 4.4568 6.7379 NaN 1 0 Median 89423000 42837000 46586000 74398000 39953000 34445000 15025000 2884500 12141000 12539 61;490;1320 12869;12870 45358;45359;45360;45361 68323;68324;68325;68326;68327;68328;68329 68324 33 7 VEDPEINSIQDIK LSLRSSRTNPETKSKVEDPEINSIQDIKEG SKVEDPEINSIQDIKEGQLLRGYVGSIQPH K V E I K E 0 0 1 2 0 1 2 0 0 3 0 1 0 0 1 1 0 0 0 1 0 0 13 0 1498.7515 Q14690 Q14690 1310 1322 PDCD11 Protein RRP5 homolog yes yes 2 0.00037556 82.543 2 0.96673 1.2399 2.0105 2 Median 0.96673 1.2399 2.0105 2 0 Median NaN NaN NaN 0 0 Median 7365800 4033900 3331900 7365800 4033900 3331900 0 0 0 12540 1494 12871 45362;45363 68330;68331 68331 2 VEDQELPTQPEAPDEHQDMDADPGGPEFLK GPLTLTRPRPRKRAKVEDQELPTQPEAPDE HQDMDADPGGPEFLKTPLGGSFLVYESFLY K V E L K T 2 0 0 5 0 3 5 2 1 0 2 1 1 1 5 0 1 0 0 1 0 0 30 0 3333.4619 Q4VC44;I3L188;J3KNW1;B3KRZ0 Q4VC44 394 423 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 3 6.9141E-06 42.181 1 0.40021 0.60851 NaN 1 Median NaN NaN NaN 0 0 Median 0.40021 0.60851 NaN 1 0 Median 12194000 8017900 4176000 0 0 0 12194000 8017900 4176000 12541 1536 12872 45364 68332 68332 706 1 VEDVSAVEIVGGATR IEVPLYSLLEQTHLKVEDVSAVEIVGGATR VEDVSAVEIVGGATRIPAVKERIAKFFGKD K V E T R I 2 1 0 1 0 0 2 2 0 1 0 0 0 0 0 1 1 0 0 4 0 0 15 0 1500.7784 A0A024RDQ0;A0A024RDS1;Q92598;B4DF68;B4DZB4;A0A0A0MSM0;B4DY72 A0A024RDQ0 332 346 HSPH1 Heat shock protein 105 kDa yes no 2 2.5109E-11 152.38 2 1 0.74412 0.9949 158.42 2 Median 0.23261 0.32455 NaN 1 0 Median 2.3804 3.0498 NaN 1 0 Median 12978000 8709500 4268100 8074700 7235700 838970 4903000 1473800 3429200 12542 320 12873 45365;45366;45367 68333;68334;68335;68336 68333 4 VEEAEPEEFVVEK TLQKMGKKQNGKSKKVEEAEPEEFVVEKVL KKVEEAEPEEFVVEKVLDRRVVNGKVEYFL K V E E K V 1 0 0 0 0 0 6 0 0 0 0 1 0 1 1 0 0 0 0 3 0 0 13 0 1532.7246 A4D177;Q13185;C9JMM0;B8ZZ43;S4R2Y4 A4D177 22 34 CBX3 Chromobox protein homolog 3 yes no 2 7.5517E-33 213.35 2 0.56553 0.71845 12.231 2 Median 0.56553 0.71845 12.231 2 0 Median NaN NaN NaN 0 0 Median 8803700 5030600 3773200 8803700 5030600 3773200 0 0 0 12543 547 12874 45368;45369 68337;68338;68339 68337 3 VEEAIVAR TQLLINQLWQLPTERVEEAIVARLPEPTTR WQLPTERVEEAIVARLPEPTTRLPREKPLP R V E A R L 2 1 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 2 0 0 8 0 885.49198 Q15050 Q15050 84 91 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 0.00010409 128.57 2 2 0.73144 1.0553 14.738 4 Median 0.68179 0.91954 9.8375 2 0 Median 0.73284 1.1602 3.7755 2 0 Median 139620000 82169000 57449000 71311000 42873000 28438000 68307000 39297000 29011000 12544 1503 12875 45370;45371;45372;45373 68340;68341;68342;68343;68344;68345;68346 68341 7 VEEEEERCQHLQAEK KKQELEEICHDLEARVEEEEERCQHLQAEK VEEEEERCQHLQAEKKKMQQNIQELEEQLE R V E E K K 1 1 0 0 1 2 6 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 15 1 1912.8585 A0A024R1N1;P35579;Q86XU5;A0A0U4BW16 A0A024R1N1 924 938 MYH9 Myosin-9 no no 2;3 5.2994E-29 153.23 5 0.94893 1.2721 6.6741 5 Median 0.94893 1.2721 6.6741 5 0 Median NaN NaN NaN 0 0 Median 73753000 37202000 36551000 73753000 37202000 36551000 0 0 0 12545 61;490 12876 45374;45375;45376;45377;45378 68347;68348;68349;68350;68351;68352;68353;68354;68355;68356 68352 10 VEEISPNIR ASAFTEEQAVLYNQRVEEISPNIRYCAYNI VLYNQRVEEISPNIRYCAYNIGDQSAINEL R V E I R Y 0 1 1 0 0 0 2 0 0 2 0 0 0 0 1 1 0 0 0 1 0 0 9 0 1055.5611 Q9UHB9;B4DVI7;B3KMI9 Q9UHB9 237 245 SRP68 Signal recognition particle subunit SRP68 yes no 2 0.023422 82.241 2 1 2.0501 2.649 NaN 1 Median NaN NaN NaN 0 0 Median 2.0501 2.649 NaN 1 0 Median 7700300 5420000 2280300 3853600 3853600 0 3846700 1566400 2280300 12546 1784 12877 45379;45380;45381 68357;68358;68359 68359 3 VEEQEPELTSTPNFVVEVIK SPTFDGEEEPSQGQKVEEQEPELTSTPNFV PELTSTPNFVVEVIKNDDGKRALVLDCHYP K V E I K N 0 0 1 0 0 1 5 0 0 1 1 1 0 1 2 1 2 0 0 4 0 0 20 0 2286.1631 A8K651;Q07021;I3L3Q7;I3L3B0 A8K651 155 174 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes no 2 1.1008E-24 160.63 4 1 0.4363 0.55363 58.763 5 Median 0.40906 0.51751 21.653 4 0 Median 1.1284 1.7423 NaN 1 0 Median 53071000 31831000 21240000 29832000 20590000 9242300 23238000 11240000 11998000 12547 620 12878 45382;45383;45384;45385;45386 68360;68361;68362;68363;68364;68365;68366;68367;68368 68361 9 VEFATLQEALAHALTEK AELEMRLQNALNEQRVEFATLQEALAHALT FATLQEALAHALTEKEGKDQELAKLRGLEA R V E E K E 4 0 0 0 0 1 3 0 1 0 3 1 0 1 0 0 2 0 0 1 0 0 17 0 1869.9836 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q7Z757;Q9UPG3;Q4LE64;Q14980 Q4LE64 1043 1059 NUMA1;NuMA;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 3 2.2616E-10 94.639 4 2 0.67766 0.8625 28.456 5 Median 0.7262 0.88615 3.0326 3 0 Plateau 0.32801 0.52494 6.5642 2 0 Median 201190000 127290000 73892000 101190000 52895000 48299000 99992000 74399000 25593000 12548 148;1499 12879 45387;45388;45389;45390;45391;45392 68369;68370;68371;68372;68373;68374;68375;68376;68377;68378 68373 10 VEFMDDTSR VLGRTGSQGQCTQVRVEFMDDTSRSIIRNV QCTQVRVEFMDDTSRSIIRNVKGPVREGDV R V E S R S 0 1 0 2 0 0 1 0 0 0 0 0 1 1 0 1 1 0 0 1 0 0 9 0 1098.4652 B2R4R9;P62857 B2R4R9 32 40 RPS28 40S ribosomal protein S28 yes no 2 0.0074855 57.96 2 2 0.77492 1.0702 8.9597 4 Median 0.86252 1.171 9.1716 2 0 Median 0.71587 1.034 1.3148 2 0 Median 34082000 18258000 15823000 7698000 3748700 3949300 26384000 14510000 11874000 12549 687 12880 45393;45394;45395;45396 68379;68380;68381;68382;68383 68381 238 5 VEFNIR TLDEWKAIQNKDRAKVEFNIRKPNEGADGQ AIQNKDRAKVEFNIRKPNEGADGQWKKGFV K V E I R K 0 1 1 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 6 0 776.41809 Q63HR1;Q5VU21;D3DQ69;Q8NC51;D3DQ70 Q63HR1 283 288 DKFZp686P17171;SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 2 0.034456 102.12 1 1 1.2286 1.6718 74.207 2 Median 0.73787 0.98926 NaN 1 0 Median 2.0457 2.8254 NaN 1 0 Median 23943000 12258000 11685000 13993000 8687700 5305000 9950100 3570500 6379600 12550 1578 12881 45397;45398 68384;68385 68385 2 VEFTFPDFVTEGAR FEANTYQETYKRISRVEFTFPDFVTEGARD RVEFTFPDFVTEGARDLISRLLKHNPSQRP R V E A R D 1 1 0 1 0 0 2 1 0 0 0 0 0 3 1 0 2 0 0 2 0 0 14 0 1613.7726 O14965;B4DX16;B2R6Z3 O14965 344 357 AURKA Aurora kinase A yes no 2 9.049E-10 109.72 4 2 1.0569 1.4671 21.566 6 Median 0.89256 1.2391 21.043 4 0 Median 1.2185 1.7124 5.8235 2 0 Median 53099000 27177000 25922000 32928000 18514000 14414000 20171000 8663000 11508000 12551 1172 12882 45399;45400;45401;45402;45403;45404 68386;68387;68388;68389;68390;68391;68392;68393;68394;68395 68389 10 VEGTDVTGIEEVVIPK ARSCRFYSGSATLSKVEGTDVTGIEEVVIP EGTDVTGIEEVVIPKKKTWDKVAVLQALAS K V E P K K 0 0 0 1 0 0 3 2 0 2 0 1 0 0 1 0 2 0 0 4 0 0 16 0 1683.8931 B8ZZQ4;B4DF73;Q96EY7;F8WE76 B8ZZQ4 46 61 PTCD3 Pentatricopeptide repeat domain-containing protein 3, mitochondrial yes no 2 0.0069264 98.942 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7428700 1082100 6346600 1082100 1082100 0 6346600 0 6346600 12552 802 12883 45405;45406 68396;68397;68398 68396 3 VEGTEPTTAFNLFVGNLNFNK EMAKQKAAPEAKKQKVEGTEPTTAFNLFVG TTAFNLFVGNLNFNKSAPELKTGISDVFAK K V E N K S 1 0 4 0 0 0 2 2 0 0 2 1 0 3 1 0 3 0 0 2 0 0 21 0 2311.1485 B3KTP9;A0A024R4A0;P19338;B3KM80;Q6ZS99 B3KTP9 221 241 NCL Nucleolin yes no 2 1.7093E-10 124.47 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6671100 6671100 0 6671100 6671100 0 0 0 0 12553 119 12884 45407 68399 68399 1 VEHINLHPELDGQEYVVEFDFLGK EEGETADTVGCCSLRVEHINLHPELDGQEY LDGQEYVVEFDFLGKDSIRYYNKVPVEKRV R V E G K D 0 0 1 2 0 1 4 2 2 1 3 1 0 2 1 0 0 0 1 3 0 0 24 0 2826.3865 P11387;B9EG90 P11387 509 532 TOP1 DNA topoisomerase 1 yes no 3;4 1.789E-95 220.88 6 3 0.76856 1.0147 28.158 9 Median 0.76227 0.97019 5.4203 6 0 Median 0.86108 1.398 29.591 3 0 Median 685050000 387010000 298050000 540090000 307870000 232220000 144960000 79135000 65826000 12554 1255 12885 45408;45409;45410;45411;45412;45413;45414;45415;45416 68400;68401;68402;68403;68404;68405;68406;68407;68408;68409;68410;68411;68412;68413;68414 68407 15 VEIAGPGFINVHLR ENITKHLPDNECIEKVEIAGPGFINVHLRK KVEIAGPGFINVHLRKDFVSEQLTSLLVNG K V E L R K 1 1 1 0 0 0 1 2 1 2 1 0 0 1 1 0 0 0 0 2 0 0 14 0 1520.8463 P54136 P54136 154 167 RARS Arginine--tRNA ligase, cytoplasmic yes yes 3 2.3272E-07 110.31 3 1 0.52024 0.71134 77.919 4 Median 0.48995 0.65659 20.92 3 0 Median 1.9918 2.9104 NaN 1 0 Median 40700000 20826000 19874000 26559000 16634000 9924700 14141000 4191700 9949100 12555 1373 12886 45417;45418;45419;45420 68415;68416;68417;68418;68419 68417 5 VEIETSEEIQEK NGESASPERDRESLKVEIETSEEIQEKQVQ SLKVEIETSEEIQEKQVQKQTLPSKAFERE K V E E K Q 0 0 0 0 0 1 5 0 0 2 0 1 0 0 0 1 1 0 0 1 0 0 12 0 1432.6933 Q14676 Q14676 892 903 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 0.0011932 64.82 1 0.86054 1.272 NaN 1 Median NaN NaN NaN 0 0 Median 0.86054 1.272 NaN 1 0 Median 6195200 3433700 2761400 0 0 0 6195200 3433700 2761400 12556 1491 12887 45421 68420;68421 68421 2 VEILANDQGNR LGTTYSCVGVFQQGRVEILANDQGNRTTPS QQGRVEILANDQGNRTTPSYVAFTDTERLV R V E N R T 1 1 2 1 0 1 1 1 0 1 1 0 0 0 0 0 0 0 0 1 0 0 11 0 1227.6208 Q53FC7;B3KSM6;B2R6X5;P17066;P48741 Q53FC7 28 38 HSPA6;HSPA7 Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 yes no 2 1.5958E-14 191.17 4 2 0.62558 0.86303 49.976 6 Median 0.6265 0.86667 3.429 4 0 Linear 1.3515 2.2119 2.1733 2 0 Median 914530000 508010000 406520000 701830000 419420000 282410000 212700000 88594000 124110000 12557 701 12888 45422;45423;45424;45425;45426;45427 68422;68423;68424;68425;68426;68427;68428;68429;68430;68431;68432;68433;68434 68425 13 VEILNEHR GCGRLNEPIKVLCRRVEILNEHRGEKLNRV IKVLCRRVEILNEHRGEKLNRVKMVEKEKD R V E H R G 0 1 1 0 0 0 2 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 1008.5352 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83 Q9NTJ3 274 281 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 0.0058107 84.568 3 0.62839 0.89834 5.8966 3 Median NaN NaN NaN 0 0 Median 0.62839 0.89834 5.8966 3 0 Median 24700000 14337000 10363000 0 0 0 24700000 14337000 10363000 12558 1760 12889 45428;45429;45430 68435;68436;68437 68436 3 VEILNEHRGEK GCGRLNEPIKVLCRRVEILNEHRGEKLNRV LCRRVEILNEHRGEKLNRVKMVEKEKDALE R V E E K L 0 1 1 0 0 0 3 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 11 1 1322.6943 Q9NTJ3;E9PD53;B3KXX5;Q6NSG3;Q58F29;Q6P169;C9JR83 Q9NTJ3 274 284 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 0.00062409 82.494 2 2 0.62875 0.91158 16.611 4 Median 0.65061 0.85806 28.036 2 0 Median 0.62875 0.91158 2.2647 2 0 Median 33929000 19872000 14057000 27203000 15748000 11455000 6726100 4123900 2602200 12559 1760 12890 45431;45432;45433;45434 68438;68439;68440;68441;68442 68440 5 VELCSFSGYK ______________________________ ______________________________ K V E Y K I 0 0 0 0 1 0 1 1 0 0 1 1 0 1 0 2 0 0 1 1 0 0 10 0 1188.5485 C9JXB8;C9JNW5;V9HW01;P83731 C9JXB8 3 12 RPL24;HEL-S-310 60S ribosomal protein L24 yes no 1;2 2.69E-07 135.79 6 2 0.91253 1.1776 33.527 7 Median 0.9483 1.26 14.648 5 0 Median 0.41144 0.64867 0.2359 2 0 Median 2472600000 1360100000 1112500000 1931200000 971720000 959450000 541440000 388430000 153010000 12560 942 12891 45435;45436;45437;45438;45439;45440;45441;45442 68443;68444;68445;68446;68447;68448;68449;68450;68451;68452;68453;68454;68455;68456 68448 14 VELDNMPLR GFIRLETRTLAEIAKVELDNMPLRGKQLRV LAEIAKVELDNMPLRGKQLRVRFACHSASL K V E L R G 0 1 1 1 0 0 1 0 0 0 2 0 1 0 1 0 0 0 0 1 0 0 9 0 1085.5539 A8K525;A0A0S2Z4Z9;Q15233;C9IZL7;C9JYS8;A0A0S2Z4E7;C9J4X2 A8K525 127 135 NONO Non-POU domain-containing octamer-binding protein yes no 2 0.0079298 74.255 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9344400 1035600 8308800 1035600 1035600 0 8308800 0 8308800 12561 473 12892;12893 45443;45444 68457;68458 68458 167 2 VELECETIK ILDQKLNGLNEEIARVELECETIKQENTRL NEEIARVELECETIKQENTRLQNIIDNQKY R V E I K Q 0 0 0 0 1 0 3 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 9 0 1119.5482 A8K031;O14777;Q05DQ6 A8K031 338 346 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 0.038021 42.109 1 0.50139 0.63629 NaN 1 Median 0.50139 0.63629 NaN 1 0 Median NaN NaN NaN 0 0 Median 7040000 4441400 2598600 7040000 4441400 2598600 0 0 0 12562 574 12894 45445 68459 68459 1 VELESRLEGLTDEINFLR FVLIKKDVDEAYMNKVELESRLEGLTDEIN ESRLEGLTDEINFLRQLYEEEIRELQSQIS K V E L R Q 0 2 1 1 0 0 4 1 0 1 4 0 0 1 0 1 1 0 0 1 0 0 18 1 2132.1113 CON__P05787;P05787;Q969I0;F8VUG2;Q7L4M3;CON__H-INV:HIT000292931;F8VP67;F8W1U3 CON__P05787 208 225 KRT8 Keratin, type II cytoskeletal 8 no no 3 1.8817E-05 119.46 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4385400 4385400 0 4385400 4385400 0 0 0 0 + 12563 955;1068 12895 45446;45447 68460;68461 68461 2 VELHSTCQTISVDR GYIGVVKDATESTARVELHSTCQTISVDRQ RVELHSTCQTISVDRQRLTTVGSRRPGGMT R V E D R Q 0 1 0 1 1 1 1 0 1 1 1 0 0 0 0 2 2 0 0 2 0 0 14 0 1643.7937 B4DZJ7;O00267;B4E0Q4;B4DJK4 B4DZJ7 712 725 SUPT5H Transcription elongation factor SPT5 yes no 3 0.003932 63.727 3 0.64807 0.92136 4.2125 2 Median 0.64807 0.92136 4.2125 2 0 Median NaN NaN NaN 0 0 Median 11138000 8676900 2461400 11138000 8676900 2461400 0 0 0 12564 879 12896 45448;45449;45450 68462;68463;68464;68465 68462 4 VELIAYFEK DVYLINPQGKAFRSKVELIAYFEKVGDTSL KAFRSKVELIAYFEKVGDTSLDPNDFDFTV K V E E K V 1 0 0 0 0 0 2 0 0 1 1 1 0 1 0 0 0 0 1 1 0 0 9 0 1110.5961 A0A140VKC4;D9ZNA4;D5L9I5;D3YJ43;D0UU70;A8K079;E9LUH4;P51608;E1B2J3;C6KG45;D6QZ43;A0A087X1U4;C6KG44;A0A087WVW7;B5MCB4;I6LM39;A0A0S2Z401;A0A0D9SFX7;D5L9I4;A0A0S2Z3U3;A0A075BPP5;A0A1B0GTV0 A0A140VKC4 148 156 MECP2 Methyl-CpG-binding protein 2 yes no 2 0.031661 47.603 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3007600 3007600 0 0 0 0 3007600 3007600 0 12565 512 12897 45451 68466 68466 1 VELQELNDR DAINTEFKNTRTNEKVELQELNDRFANYID TRTNEKVELQELNDRFANYIDKVRFLEQQN K V E D R F 0 1 1 1 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 9 0 1114.5619 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8;A0A1B0GUA0;A0A1B0GTT5;Q9H319;Q53SB5;Q45VM8;Q45VM7;Q45VM6;L7RDA5;A5Z217;P17661;B4DUI0 V9HWE1 105 113 HEL113;VIM;tmp_locus_29;DES Vimentin;Desmin yes no 2 2.0902E-08 163.99 4 2 0.75435 1.0404 28.754 6 Median 0.72864 1.0042 5.8585 4 0 Median 1.0577 1.7227 2.5123 2 0 Median 1140800000 654180000 486650000 994290000 582150000 412140000 146540000 72028000 74513000 12566 1245 12898 45452;45453;45454;45455;45456;45457 68467;68468;68469;68470;68471;68472;68473;68474;68475 68469 9 VELQQEVEK RIKRVTQKEELERQRVELQQEVEKLARENS ELERQRVELQQEVEKLARENSSMRLELDAL R V E E K L 0 0 0 0 0 2 3 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 9 0 1100.5714 A0A024R804;A8WFP5;O60675 A0A024R804 84 92 MAFK Transcription factor MafK yes no 2 0.002747 81.338 2 1.2859 1.9232 5.7968 2 Median NaN NaN NaN 0 0 Median 1.2859 1.9232 5.7968 2 0 Median 18652000 8275000 10377000 0 0 0 18652000 8275000 10377000 12567 188 12899 45458;45459 68476;68477;68478 68477 3 VELSDVQNPAISITENVLHFK PHVYWAQRHRELYLRVELSDVQNPAISITE QNPAISITENVLHFKAQGHGAKGDNVYEFH R V E F K A 1 0 2 1 0 1 2 0 1 2 2 1 0 1 1 2 1 0 0 3 0 0 21 0 2352.2325 Q9P035 Q9P035 23 43 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes yes 3 7.4781E-60 202.81 4 0.56809 0.7232 10.305 4 Median 0.56809 0.7232 10.305 4 0 Median NaN NaN NaN 0 0 Median 66240000 40986000 25254000 66240000 40986000 25254000 0 0 0 12568 1775 12900 45460;45461;45462;45463 68479;68480;68481;68482;68483;68484;68485;68486;68487;68488 68483 10 VELSQLR GKKKEELLKQLDDLKVELSQLRVAKVTGGA LKQLDDLKVELSQLRVAKVTGGAASKLSKI K V E L R V 0 1 0 0 0 1 1 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 7 0 843.48142 P42766;F2Z388;A0A024R866;A4D2M5 P42766 26 32 RPL35;LOC154880 60S ribosomal protein L35 yes no 2 0.00045286 160.69 4 2 0.93468 1.2884 52.329 6 Median 0.95172 1.3167 2.4251 4 0 Median 0.28615 0.47584 3.5617 2 0 Median 5358300000 2934500000 2423700000 4617300000 2361600000 2255700000 740980000 572940000 168040000 12569 1340 12901 45464;45465;45466;45467;45468;45469 68489;68490;68491;68492;68493;68494;68495;68496;68497;68498;68499;68500;68501;68502 68495 14 VELSTGMPR VRGLDGKVICGSRVRVELSTGMPRRSRFDR CGSRVRVELSTGMPRRSRFDRPPARRPFDP R V E P R R 0 1 0 0 0 0 1 1 0 0 1 0 1 0 1 1 1 0 0 1 0 0 9 0 988.50117 A0A0B4J1Z1;B4DEK2;C9JAB2;Q16629;Q8NB80 A0A0B4J1Z1 79 87 SRSF7 Serine/arginine-rich splicing factor 7 yes no 2 0.0074855 57.96 2 0.80494 1.1664 14.59 2 Median NaN NaN NaN 0 0 Median 0.80494 1.1664 14.59 2 0 Median 26063000 13550000 12513000 0 0 0 26063000 13550000 12513000 12570 414 12902 45470;45471 68503;68504 68503 131 2 VEMLETER EAATLAANNTQLQARVEMLETERGQQEAKL NTQLQARVEMLETERGQQEAKLLAERGHFE R V E E R G 0 1 0 0 0 0 3 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 8 0 1005.4801 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;A8K394;Q4LE64;Q14980 Q4LE64 436 443 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.023539 57.96 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2590000 2590000 0 0 0 0 2590000 2590000 0 12571 148;1499;590 12903 45472 68505 68505 77 1 VENSIPAAGETQNVEVAAGPAGK EWGDDEEEQPSKRRRVENSIPAAGETQNVE GETQNVEVAAGPAGKCAAVDVEPPSKQKEK R V E G K C 5 0 2 0 0 1 3 3 0 1 0 1 0 0 2 1 1 0 0 3 0 0 23 0 2208.1022 Q15020;B4DYA2;B4DRG9;F8VV04 Q15020 647 669 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 0.0091097 63.462 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 442340 442340 0 442340 442340 0 0 0 0 12572 1501 12904 45473 68506 68506 1 VENSQVTVAVR ETVVQNTSAGKDPLKVENSQVTVAVRVRPF DPLKVENSQVTVAVRVRPFTKREKIEKASQ K V E V R V 1 1 1 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 4 0 0 11 0 1200.6463 Q15058 Q15058 354 364 KIF14 Kinesin-like protein KIF14 yes yes 2 0.0018309 92.538 4 0.84437 1.1908 22.7 3 Median 0.84437 1.1908 22.7 3 0 Median NaN NaN NaN 0 0 Median 16625000 6395400 10230000 16625000 6395400 10230000 0 0 0 12573 1504 12905 45474;45475;45476;45477 68507;68508;68509;68510 68510 4 VEPAVSSVVNSIQVLTSK SSPKDKKKKEKKVAKVEPAVSSVVNSIQVL AVSSVVNSIQVLTSKAAILETAPKEVPMVV K V E S K A 1 0 1 0 0 1 1 0 0 1 1 1 0 0 1 4 1 0 0 5 0 0 18 0 1856.0255 A0A0A0MRV0;A7BI36;Q9P2E9;A2A2S5;Q32NB1 A0A0A0MRV0 149 166 RRBP1 Ribosome-binding protein 1 yes no 2 8.754E-13 144.88 4 1.3209 1.608 17.427 3 Median 1.3209 1.608 17.427 3 0 Median NaN NaN NaN 0 0 Median 10345000 4040800 6304600 10345000 4040800 6304600 0 0 0 12574 390 12906 45478;45479;45480;45481 68511;68512;68513;68514 68513 4 VEPFVCAQCR SVIDSQGKSCASLLRVEPFVCAQCRTDFTP ASLLRVEPFVCAQCRTDFTPHWKQEKNGKI R V E C R T 1 1 0 0 2 1 1 0 0 0 0 0 0 1 1 0 0 0 0 2 0 0 10 0 1264.5693 A0A0U1RRM1;Q8WXI9;B3KSZ4;A0A0U1RR30 A0A0U1RRM1 399 408 GATAD2B Transcriptional repressor p66-beta yes no 2 0.0019372 73.931 1 1 1.0074 1.381 71.621 2 Median 0.62451 0.83226 NaN 1 0 Median 1.625 2.2916 NaN 1 0 Median 27873000 15703000 12170000 21073000 13128000 7945100 6800100 2575000 4225100 12575 488 12907 45482;45483 68515;68516;68517 68516 3 VEPGLGADNSVVR ASKIVGPSGAAVPCKVEPGLGADNSVVRFL CKVEPGLGADNSVVRFLPREEGPYEVEVTY K V E V R F 1 1 1 1 0 0 1 2 0 0 1 0 0 0 1 1 0 0 0 3 0 0 13 0 1311.6783 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 1020 1032 FLNA Filamin-A yes no 2 0.00011095 77.64 4 0.83005 1.1145 8.4272 3 Median 0.83005 1.1145 8.4272 3 0 Median NaN NaN NaN 0 0 Median 101210000 64485000 36721000 101210000 64485000 36721000 0 0 0 12576 1287 12908 45484;45485;45486;45487 68518;68519;68520;68521;68522;68523 68521 6 VEPSDNGPLFTELK NSSESVGGDAPCVVKVEPSDNGPLFTELKF KVEPSDNGPLFTELKFYQRAAKPEQIQKWI K V E L K F 0 0 1 1 0 0 2 1 0 0 2 1 0 1 2 1 1 0 0 1 0 0 14 0 1544.7722 A8K245;Q99986 A8K245 72 85 VRK1 Serine/threonine-protein kinase VRK1 yes no 2 9.0417E-07 90.913 4 1.1002 1.3845 17.949 4 Median 1.1002 1.3845 17.949 4 0 Median NaN NaN NaN 0 0 Median 61824000 32961000 28863000 61824000 32961000 28863000 0 0 0 12577 582 12909 45488;45489;45490;45491 68524;68525;68526;68527;68528;68529;68530;68531 68531 8 VEPSDRYPQCLCLSPTYELALQTGK GTGKTAAFVLAMLSRVEPSDRYPQCLCLSP LCLSPTYELALQTGKVIEQMGKFYPELKLA R V E G K V 1 1 0 1 2 2 2 1 0 0 4 1 0 0 3 2 2 0 2 1 0 0 25 1 2924.4048 I3L0H8;Q9HBZ9;F6QDS0;Q9NUU7;B4DS24;Q68DY7;Q69YM2;I3L352 I3L0H8 124 148 DDX19A;DKFZp686C21137;DKFZp762C1313 ATP-dependent RNA helicase DDX19A yes no 3 1.5935E-05 72.22 3 0.44624 0.58061 41.181 3 Plateau 0.44624 0.58061 41.181 3 0 Plateau NaN NaN NaN 0 0 Median 21432000 16084000 5347300 21432000 16084000 5347300 0 0 0 12578 1058 12910 45492;45493;45494 68532;68533;68534;68535;68536;68537;68538;68539 68535 8 VEPVGDVVSTR GKPLKISRRVLRAPKVEPVGDVVSTRDPVK RAPKVEPVGDVVSTRDPVKSQSKSNTSLPP K V E T R D 0 1 0 1 0 0 1 1 0 0 0 0 0 0 1 1 1 0 0 4 0 0 11 0 1156.6088 P46013 P46013 2968 2978 MKI67 Antigen KI-67 yes yes 2 0.0092252 79.974 3 2 0.89564 1.2245 23.179 5 Median 0.72884 1.0141 12.735 3 0 Median 0.96528 1.5639 3.8603 2 0 Median 308770000 160080000 148690000 188080000 99640000 88438000 120690000 60436000 60256000 12579 1342 12911 45495;45496;45497;45498;45499 68540;68541;68542;68543;68544;68545 68542 5 VEPVGDVVSTRDPVK GKPLKISRRVLRAPKVEPVGDVVSTRDPVK VEPVGDVVSTRDPVKSQSKSNTSLPPLPFK K V E V K S 0 1 0 2 0 0 1 1 0 0 0 1 0 0 2 1 1 0 0 5 0 0 15 1 1595.8519 P46013 P46013 2968 2982 MKI67 Antigen KI-67 yes yes 2;3 7.0259E-11 123.26 8 3 0.8364 1.1465 18.48 11 Median 0.78028 1.0257 11.383 8 0 Median 0.84631 1.4572 3.7463 3 0 Median 1066200000 560930000 505220000 758110000 398620000 359490000 308040000 162310000 145730000 12580 1342 12912 45500;45501;45502;45503;45504;45505;45506;45507;45508;45509;45510 68546;68547;68548;68549;68550;68551;68552;68553;68554;68555;68556;68557;68558;68559;68560;68561;68562;68563;68564 68555 19 VEPVGNAPLLALVHK VFFSSPLPGEEPIGRVEPVGNAPLLALVHK VEPVGNAPLLALVHKMNNCLSQMEQFPVKV R V E H K M 2 0 1 0 0 0 1 1 1 0 3 1 0 0 2 0 0 0 0 3 0 0 15 0 1555.9086 Q14669 Q14669 1207 1221 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 3 0.027698 21.666 1 0.43392 0.60564 NaN 1 Median NaN NaN NaN 0 0 Median 0.43392 0.60564 NaN 1 0 Median 3837300 2419700 1417600 0 0 0 3837300 2419700 1417600 12581 1489 12913 45511 68565 68565 1 VEPYSLTAQQSSLIR PSRAGSPRRTSKKTKVEPYSLTAQQSSLIR VEPYSLTAQQSSLIREDKSNAKLWNEVLAS K V E I R E 1 1 0 0 0 2 1 0 0 1 2 0 0 0 1 3 1 0 1 1 0 0 15 0 1690.889 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9;B4E0F9 A0A087WVR3 684 698 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 0.026979 53.528 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12582 337 12914 45512 68566 68566 1 VEQATKPSFESGR ARDMNGKSLDGKAIKVEQATKPSFESGRRG IKVEQATKPSFESGRRGPPPPPRSRGPPRG K V E G R R 1 1 0 0 0 1 2 1 0 0 0 1 0 1 1 2 1 0 0 1 0 0 13 1 1434.7103 H0Y6E7;H3BT71;P38159;B4E352 H0Y6E7 83 95 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 2;3 6.0137E-29 166.24 8 4 0.80677 1.0538 40.988 12 Median 0.87463 1.1582 8.0899 8 0 Median 0.28749 0.4905 9.3533 4 0 Median 527990000 321920000 206070000 372500000 202190000 170310000 155480000 119720000 35759000 12583 1091 12915 45513;45514;45515;45516;45517;45518;45519;45520;45521;45522;45523;45524 68567;68568;68569;68570;68571;68572;68573;68574;68575;68576;68577;68578;68579;68580;68581;68582;68583;68584;68585;68586;68587 68586 21 VEQATKPSFESGRR ARDMNGKSLDGKAIKVEQATKPSFESGRRG KVEQATKPSFESGRRGPPPPPRSRGPPRGL K V E R R G 1 2 0 0 0 1 2 1 0 0 0 1 0 1 1 2 1 0 0 1 0 0 14 2 1590.8114 H0Y6E7;H3BT71;P38159;B4E352 H0Y6E7 83 96 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 3 0.0095055 53.754 1 1 0.41522 0.52889 78.218 2 Median 0.77573 0.91954 NaN 1 0 Median 0.22225 0.3042 NaN 1 0 Median 4646400 3044700 1601700 2522800 1287100 1235700 2123600 1757600 366050 12584 1091 12916 45525;45526 68588;68589 68589 2 VEQFLTIAR LSLRRSGRQPKRTERVEQFLTIARRRGRRS PKRTERVEQFLTIARRRGRRSMPVSLEDSG R V E A R R 1 1 0 0 0 1 1 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 9 0 1075.6026 Q9BTC0 Q9BTC0 74 82 DIDO1 Death-inducer obliterator 1 yes yes 2 0.0018181 101.64 1 2 0.70387 1.1019 19.662 3 Plateau 0.58512 0.7711 NaN 1 0 Median 0.69506 1.0764 5.6048 2 0 Median 53371000 32477000 20894000 8713000 5575800 3137200 44658000 26901000 17757000 12585 1713 12917 45527;45528;45529 68590;68591;68592;68593;68594 68590 5 VEQLGAEGNVEESQK RVHELNEEIGKLLAKVEQLGAEGNVEESQK VEQLGAEGNVEESQKVMDEVEKARAKKREA K V E Q K V 1 0 1 0 0 2 4 2 0 0 1 1 0 0 0 1 0 0 0 2 0 0 15 0 1615.7689 A0A0A6YYJ8;Q9Y383;B3KRR1;B3KSL5 A0A0A6YYJ8 206 220 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes no 2 4.9914E-22 178.22 4 3 0.94403 1.373 34.478 4 Linear 0.67597 0.84687 20.346 3 0 Plateau 0.89712 1.3546 NaN 1 0 Median 51944000 27896000 24048000 23840000 14745000 9095600 28104000 13152000 14953000 12586 409 12918 45530;45531;45532;45533;45534;45535;45536 68595;68596;68597;68598;68599;68600;68601;68602;68603;68604 68596 10 VERADGYEPPVQESV GSSSGKATGDETGAKVERADGYEPPVQESV VERADGYEPPVQESV_______________ K V E S V - 1 1 0 1 0 1 3 1 0 0 0 0 0 0 2 1 0 0 1 3 0 0 15 1 1673.7897 Q6NXR8;P61247;D6RAT0;H0Y9Y4;D6R9B6 Q6NXR8 250 264 RPS3A 40S ribosomal protein S3a yes no 2 1.4382E-09 145.14 4 2 0.87952 1.1354 17.355 6 Plateau 0.87222 1.1812 3.9471 4 0 Median 0.56338 0.84249 2.2176 2 0 Median 151490000 83418000 68070000 120430000 63650000 56781000 31056000 19768000 11289000 12587 1393 12919 45537;45538;45539;45540;45541;45542 68605;68606;68607;68608;68609;68610;68611;68612;68613;68614;68615 68608 11 VESHFDLELR GRHSKGVAKTVTKQRVESHFDLELRAAVMH VTKQRVESHFDLELRAAVMHDILDMMPEGI R V E L R A 0 1 0 1 0 0 2 0 1 0 2 0 0 1 0 1 0 0 0 1 0 0 10 0 1243.6197 Q6P2Q9;I3L0J9 Q6P2Q9 677 686 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 0.023493 24.853 1 0.60955 0.82306 NaN 1 Median 0.60955 0.82306 NaN 1 0 Median NaN NaN NaN 0 0 Median 3758900 2623200 1135600 3758900 2623200 1135600 0 0 0 12588 1592 12920 45543 68616 68616 1 VESLESLYFTPIPAR PGEPASPISQRLPPKVESLESLYFTPIPAR VESLESLYFTPIPARSQAPLESSLDSLGDV K V E A R S 1 1 0 0 0 0 2 0 0 1 2 0 0 1 2 2 1 0 1 1 0 0 15 0 1720.9036 A0A024R5M9;A0A087WY61;Q59HB8;Q7Z757;Q96HN5;H0YFY6;Q4LE64;Q14980 Q4LE64 1753 1767 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 7.0447E-46 180.88 2 2 0.30455 0.47064 40.493 3 Median 0.6724 0.89469 NaN 1 0 Median 0.28434 0.44637 7.4886 2 0 Median 81236000 57071000 24165000 24741000 17369000 7371500 56495000 39702000 16794000 12589 148;1499 12921 45544;45545;45546;45547 68617;68618;68619;68620;68621;68622;68623 68619 7 VESLQEEIAFLK DVDNASLARLDLERKVESLQEEIAFLKKLH ERKVESLQEEIAFLKKLHEEEIQELQAQIQ K V E L K K 1 0 0 0 0 1 3 0 0 1 2 1 0 1 0 1 0 0 0 1 0 0 12 0 1404.75 V9HWE1;P08670;B0YJC4;B3KRK8;B0YJC5;Q5JVS8 V9HWE1 224 235 HEL113;VIM Vimentin yes no 2 1.9125E-36 180.36 2 2 0.97658 1.5359 57.673 3 Median 0.45665 0.58202 NaN 1 0 Median 0.99298 1.5786 3.8754 2 0 Median 122540000 55608000 66934000 21979000 9381800 12597000 100560000 46226000 54336000 12590 1245 12922 45548;45549;45550;45551 68624;68625;68626;68627;68628;68629;68630 68628 7 VESQEREDVLAGMSGK LWKEDLAAFVEELDKVESQEREDVLAGMSG ESQEREDVLAGMSGKAIKGKVGKPKVKKLQ K V E G K A 1 1 0 1 0 1 3 2 0 0 1 1 1 0 0 2 0 0 0 2 0 0 16 1 1733.8254 Q71UH4;Q02880;B4DKD0;Q59H80;B4DLV2;Q8WTY5;B7ZB27 Q71UH4 1171 1186 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 3 0.0001767 52.172 1 0.6146 0.95771 NaN 1 Median NaN NaN NaN 0 0 Median 0.6146 0.95771 NaN 1 0 Median 10825000 6708200 4116300 0 0 0 10825000 6708200 4116300 12591 1437 12923 45552 68631 68631 643 1 VESVTAGSPLTNQFYLAAPR SMSVVLKLFPQLEGKVESVTAGSPLTNQFY AGSPLTNQFYLAAPRGACYGADHDLG____ K V E P R G 3 1 1 0 0 1 1 1 0 0 2 0 0 1 2 2 2 0 1 2 0 0 20 0 2120.0902 I0EZ74;H7C3J0;B4DKE1;Q6NUM9 I0EZ74 93 112 RETSAT All-trans-retinol 13,14-reductase yes no 2 1.5238E-05 112.42 4 0.41626 0.5916 NaN 1 Median 0.41626 0.5916 NaN 1 0 Median NaN NaN NaN 0 0 Median 7550900 5973600 1577400 7550900 5973600 1577400 0 0 0 12592 819 12924 45553;45554;45555;45556 68632;68633;68634;68635 68634 4 VETDHIVAAVGLEPNVELAK VSSGKLLIKLKDGRKVETDHIVAAVGLEPN IVAAVGLEPNVELAKTGGLEIDSDFGGFRV K V E A K T 3 0 1 1 0 0 3 1 1 1 2 1 0 0 1 0 1 0 0 4 0 0 20 0 2103.1212 O95831;A0A140VK04;E9PMA0 O95831 389 408 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 3 2.3301E-05 52.045 1 0.6333 0.79417 NaN 1 Median 0.6333 0.79417 NaN 1 0 Median NaN NaN NaN 0 0 Median 7672900 5056200 2616700 7672900 5056200 2616700 0 0 0 12593 1224 12925 45557 68636 68636 1 VETFSGVYK KVHLDKAQQNNVEHKVETFSGVYKKLTGKD NNVEHKVETFSGVYKKLTGKDVNFEFPEFQ K V E Y K K 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 1 1 0 1 2 0 0 9 0 1028.5179 P62081 P62081 170 178 RPS7 40S ribosomal protein S7 yes yes 2 0.00074641 116.73 5 2 0.87568 1.1559 29.078 7 Median 0.90712 1.1808 7.3805 5 0 Median 0.4204 0.66572 2.1776 2 0 Median 964660000 551650000 413010000 776830000 415790000 361040000 187830000 135870000 51964000 12594 1395 12926 45558;45559;45560;45561;45562;45563;45564 68637;68638;68639;68640;68641;68642;68643;68644;68645;68646;68647 68639 11 VETFSGVYKK KVHLDKAQQNNVEHKVETFSGVYKKLTGKD NVEHKVETFSGVYKKLTGKDVNFEFPEFQL K V E K K L 0 0 0 0 0 0 1 1 0 0 0 2 0 1 0 1 1 0 1 2 0 0 10 1 1156.6128 P62081 P62081 170 179 RPS7 40S ribosomal protein S7 yes yes 2 0.0004236 121.09 4 2 0.72121 0.88529 34.525 6 Median 0.87876 1.0879 20.523 4 0 Median 0.35072 0.55178 5.0315 2 0 Median 79768000 49398000 30370000 60902000 35756000 25146000 18866000 13641000 5224300 12595 1395 12927 45565;45566;45567;45568;45569;45570 68648;68649;68650;68651;68652;68653;68654;68655 68654 7 VETGVLK DVYKIGGIGTVPVGRVETGVLKPGMVVTFA IGTVPVGRVETGVLKPGMVVTFAPVNVTTE R V E L K P 0 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 1 0 0 2 0 0 7 0 744.43815 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;P68104;A8K9C4;Q5VTE0;Q96RE1;A0A087WVQ9;Q53GE9;Q53GA1;Q53G85;B4DV42;Q8IUB0;Q504Z0;B4DNE0;Q9NZS6;Q53G89;Q6P4C9;B4E2C5;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q16577;Q14222 Q6IPT9 267 273 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1;EEF1A Elongation factor 1-alpha;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 2 0.013979 104.11 2 1 0.373 0.47629 11.358 2 Median 0.373 0.47629 11.358 2 0 Median NaN NaN NaN 0 0 Median 172790000 108870000 63919000 144470000 108870000 35598000 28322000 0 28322000 12596 1421 12928 45571;45572;45573 68656;68657;68658;68659 68657 4 VETGVLKPGMVVTFAPVNVTTEVK DVYKIGGIGTVPVGRVETGVLKPGMVVTFA MVVTFAPVNVTTEVKSVEMHHEALSEALPG R V E V K S 1 0 1 0 0 0 2 2 0 0 1 2 1 1 2 0 4 0 0 7 0 0 24 1 2514.3767 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;P68104;A8K9C4;Q5VTE0;Q96RE1;A0A087WVQ9;Q53GE9;Q53G85;B4DV42;Q8IUB0;Q504Z0;B4DNE0;Q9NZS6;Q53G89;Q6P4C9;B4E2C5;Q96C29;Q8TBL1;Q6P082;Q96CD8;Q14222 Q6IPT9 267 290 EEF1A1;EEF1A1P5;EEF1A1L14;EEF1A Elongation factor 1-alpha;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 3 5.2204E-31 145.81 12 3 0.39588 0.48093 128.81 13 Median 0.3856 0.47181 20.779 10 0 Median 5.4756 8.8059 21.679 3 0 Median 1537200000 838160000 699030000 1052400000 743140000 309270000 484770000 95020000 389750000 12597 1421 12929;12930 45574;45575;45576;45577;45578;45579;45580;45581;45582;45583;45584;45585;45586;45587;45588 68660;68661;68662;68663;68664;68665;68666;68667;68668;68669;68670;68671;68672;68673;68674;68675;68676;68677;68678;68679;68680 68671 624 20 VETVSQPSESPK CSENNMPSSDLADEKVETVSQPSESPKDTI DEKVETVSQPSESPKDTIDKTKKPRTRRSR K V E P K D 0 0 0 0 0 1 2 0 0 0 0 1 0 0 2 3 1 0 0 2 0 0 12 0 1286.6354 B2RA91;F8VXG7;Q99590;Q05BS8;A0A0A0MTP7;B4DZM2 B2RA91 452 463 SCAF11;SFRS2IP Protein SCAF11 yes no 2 0.031585 36.334 1 0.85751 1.0951 NaN 1 Median 0.85751 1.0951 NaN 1 0 Median NaN NaN NaN 0 0 Median 923230 531170 392060 923230 531170 392060 0 0 0 12598 722 12931 45589 68681 68681 1 VETYLNENLR QLLNERIKLEGIITRVETYLNENLRKRLDQ GIITRVETYLNENLRKRLDQVEQELNELRE R V E L R K 0 1 2 0 0 0 2 0 0 0 2 0 0 0 0 0 1 0 1 1 0 0 10 0 1249.6303 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 828 837 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 2 0.0064789 58.676 1 0.49241 0.65567 NaN 1 Median 0.49241 0.65567 NaN 1 0 Median NaN NaN NaN 0 0 Median 2163400 1375800 787600 2163400 1375800 787600 0 0 0 12599 663 12932 45590 68682 68682 1 VETYLNENLRK QLLNERIKLEGIITRVETYLNENLRKRLDQ IITRVETYLNENLRKRLDQVEQELNELRET R V E R K R 0 1 2 0 0 0 2 0 0 0 2 1 0 0 0 0 1 0 1 1 0 0 11 1 1377.7252 Q86VX4;B0AZQ4;Q9UQE7 Q86VX4 828 838 SMC3 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 3 yes no 3 0.045221 20.315 1 0.9088 1.3359 NaN 1 Median NaN NaN NaN 0 0 Median 0.9088 1.3359 NaN 1 0 Median 3723700 1643700 2080000 0 0 0 3723700 1643700 2080000 12600 663 12933 45591 68683 68683 1 VEVERDNLAEDIMR ELRRQVDQLTNDKARVEVERDNLAEDIMRL RVEVERDNLAEDIMRLREKLQEEMLQREEA R V E M R L 1 2 1 2 0 0 3 0 0 1 1 0 1 0 0 0 0 0 0 2 0 0 14 1 1687.8199 V9HWE1;P08670;B0YJC4;B3KRK8;Q53HU8 V9HWE1 171 184 HEL113;VIM Vimentin yes no 3 0.0010141 46.408 2 0.97507 1.4505 1.61 2 Median NaN NaN NaN 0 0 Median 0.97507 1.4505 1.61 2 0 Median 30176000 14446000 15730000 0 0 0 30176000 14446000 15730000 12601 1245 12934 45592;45593 68684;68685 68684 485 2 VEVETSGIGDSLLNVK TRHLTKRLPTKSSQKVEVETSGIGDSLLNV EVETSGIGDSLLNVKCAAQTLEKRGKAKPK K V E V K C 0 0 1 1 0 0 2 2 0 1 2 1 0 0 0 2 1 0 0 3 0 0 16 0 1658.8727 B4DLG2;O75152;E9PQ61 B4DLG2 566 581 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 2 8.1973E-07 109.15 4 1 0.75747 0.95412 37.836 5 Median 0.72314 0.90643 20.829 4 0 Median 1.3639 2.057 NaN 1 0 Median 26846000 15515000 11331000 18524000 11230000 7294500 8322300 4285300 4037000 12602 826 12935 45594;45595;45596;45597;45598 68686;68687;68688;68689;68690;68691 68690 6 VEVKEELLAVGK TATSSKRRPRTRAQKVEVKEELLAVGKLTQ AQKVEVKEELLAVGKLTQTSGETTHTDKEP K V E G K L 1 0 0 0 0 0 3 1 0 0 2 2 0 0 0 0 0 0 0 3 0 0 12 1 1312.7602 P46013 P46013 2849 2860 MKI67 Antigen KI-67 yes yes 2;3 7.3853E-08 109.15 4 2 0.93073 1.1592 22.014 6 Median 0.86574 1.0627 11.203 4 0 Median 0.97157 1.5596 4.7301 2 0 Median 167660000 83703000 83957000 110850000 56447000 54407000 56806000 27256000 29550000 12603 1342 12936 45599;45600;45601;45602;45603;45604 68692;68693;68694;68695;68696;68697;68698;68699;68700;68701 68699 10 VEVNTNSGEIIHK QPSKLVKRGPGRKPKVEVNTNSGEIIHKKR PKVEVNTNSGEIIHKKRGRKPKKLQYAKPE K V E H K K 0 0 2 0 0 0 2 1 1 2 0 1 0 0 0 1 1 0 0 2 0 0 13 0 1438.7416 Q8WWQ0;Q9NWP3 Q8WWQ0 1645 1657 PHIP PH-interacting protein yes no 2;3 2.1054E-09 120.96 5 2 0.91968 1.2064 7.3657 7 Median 0.93107 1.1756 7.44 5 0 Median 0.83957 1.2552 5.6144 2 0 Median 179500000 92870000 86628000 161770000 82928000 78838000 17732000 9942200 7789600 12604 1668 12937 45605;45606;45607;45608;45609;45610;45611 68702;68703;68704;68705;68706;68707;68708;68709;68710;68711;68712;68713 68710 12 VEVQVLNIDIPR KTKKRRSLGLGPGERVEVQVLNIDIPRSRI GERVEVQVLNIDIPRSRITLDLIRVL____ R V E P R S 0 1 1 1 0 1 1 0 0 2 1 0 0 0 1 0 0 0 0 3 0 0 12 0 1393.7929 B3KPM8;Q8N5C6;B7ZAA7;B7Z6X7 B3KPM8 973 984 SRBD1 S1 RNA-binding domain-containing protein 1 yes no 2 0.039532 33.87 1 0.42382 0.63562 NaN 1 Median NaN NaN NaN 0 0 Median 0.42382 0.63562 NaN 1 0 Median 7342800 4815600 2527100 0 0 0 7342800 4815600 2527100 12605 765 12938 45612 68714 68714 1 VEYFLK FVVEKVLDRRVVNGKVEYFLKWKGFTDADN LDRRVVNGKVEYFLKWKGFTDADNTWEPEE K V E L K W 0 0 0 0 0 0 1 0 0 0 1 1 0 1 0 0 0 0 1 1 0 0 6 0 797.43234 A4D177;Q13185;C9JMM0;B8ZZ43;S4R2Y4 A4D177 45 50 CBX3 Chromobox protein homolog 3 yes no 2 0.050245 69.39 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23236000 23236000 0 0 0 0 23236000 23236000 0 12606 547 12939 45613 68715 68715 1 VEYSEEELK KRKHDNEGSGSKRPKVEYSEEELKTHISKG GSKRPKVEYSEEELKTHISKGTLGKFTVPM K V E L K T 0 0 0 0 0 0 4 0 0 0 1 1 0 0 0 1 0 0 1 1 0 0 9 0 1124.5237 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356;Q6IC76 A0A024R1N4 557 565 XRCC6;G22P1 X-ray repair cross-complementing protein 6 yes no 2 2.6286E-05 143.89 4 2 0.57267 0.78317 9.7397 6 Median 0.58288 0.75301 4.6122 4 0 Median 0.56273 0.89505 4.4148 2 0 Median 447290000 279690000 167600000 292270000 180040000 112230000 155020000 99648000 55371000 12607 62 12940 45614;45615;45616;45617;45618;45619 68716;68717;68718;68719;68720;68721;68722;68723;68724;68725;68726;68727 68717 12 VFAEYPGSSAQLR GFMDFICSLVTKSVKVFAEYPGSSAQLRVL VKVFAEYPGSSAQLRVLLAFYASTIVSALV K V F L R V 2 1 0 0 0 1 1 1 0 0 1 0 0 1 1 2 0 0 1 1 0 0 13 0 1423.7096 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 202 214 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.00092199 60.167 1 1 0.84393 1.171 3.8648 2 Median 0.84958 1.1395 NaN 1 0 Median 0.83831 1.2035 NaN 1 0 Median 27255000 14510000 12745000 14147000 7701800 6445600 13108000 6808700 6299300 12608 748 12941 45620;45621 68728;68729 68729 1 VFANAPDSACVIGLK LWLSEKLREVYRKGRVFANAPDSACVIGLK VFANAPDSACVIGLKKKAVAFSPVTELKKD R V F L K K 3 0 1 1 1 0 0 1 0 1 1 1 0 1 1 1 0 0 0 2 0 0 15 0 1560.797 P17858;Q7L2M7;B3KNQ7;Q9BSP4 P17858 699 713 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 2 0.002767 83.045 2 0.34403 0.45436 NaN 1 Median 0.34403 0.45436 NaN 1 0 Median NaN NaN NaN 0 0 Median 6273600 5247200 1026400 6273600 5247200 1026400 0 0 0 12609 1279 12942 45622;45623 68730;68731 68730 2 VFANPEDCVAFGK MLMSTATAFYRLTRKVFANPEDCVAFGKGE RKVFANPEDCVAFGKGENAKKYLRTDDRVE K V F G K G 2 0 1 1 1 0 1 1 0 0 0 1 0 2 1 0 0 0 0 2 0 0 13 0 1452.6708 Q6LET6;A0A024RAX2;P10620;F5H7F6;F5H6X2 Q6LET6 43 55 MGST1 Microsomal glutathione S-transferase 1 yes no 2 0.00038997 86.189 4 0.39183 0.49764 15.827 4 Median 0.39183 0.49764 15.827 4 0 Median NaN NaN NaN 0 0 Median 34750000 22699000 12051000 34750000 22699000 12051000 0 0 0 12610 251 12943 45624;45625;45626;45627 68732;68733;68734;68735;68736 68734 5 VFASELNAGIIK WDSLRSGPASTFNDRVFASELNAGIIKTDQ NDRVFASELNAGIIKTDQNYEKMMFKEALK R V F I K T 2 0 1 0 0 0 1 1 0 2 1 1 0 1 0 1 0 0 0 1 0 0 12 0 1260.7078 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3;Q9NPU8;Q9HAM7;Q9NVP8;Q9NVC0 B4E266 750 761 LARS;DKFZp762P233 Leucine--tRNA ligase, cytoplasmic yes no 2 2.6978E-06 140.75 4 0.57278 0.72653 5.4562 3 Median 0.57278 0.72653 5.4562 3 0 Median NaN NaN NaN 0 0 Median 28164000 20359000 7804300 28164000 20359000 7804300 0 0 0 12611 732 12944 45628;45629;45630;45631 68737;68738;68739;68740;68741 68738 5 VFASLPQVER ______________________________ YEIKKVFASLPQVERGVSKIIGGDPKGNNF K V F E R G 1 1 0 0 0 1 1 0 0 0 1 0 0 1 1 1 0 0 0 2 0 0 10 0 1144.6241 V9HWG7;Q53H17;Q53GN4;Q59ER5;O75083;D6RD66;B3KXN4;B4DS71;B4DZX5 V9HWG7 8 17 HEL-S-52;WDR1 WD repeat-containing protein 1 yes no 2 0.051947 79.906 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12612 1195 12945 45632 68742 68742 1 VFCVEEEDSESSLQK KLLEKTNLEKEKGSRVFCVEEEDSESSLQK VFCVEEEDSESSLQKRRRKKKKKHHLQPEN R V F Q K R 0 0 0 1 1 1 4 0 0 0 1 1 0 1 0 3 0 0 0 2 0 0 15 0 1784.7775 Q14684 Q14684 384 398 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 1.1334E-14 156.01 3 1 0.80672 1.0217 11.545 4 Median 0.85813 1.0885 7.8891 3 0 Median 0.5841 0.8668 NaN 1 0 Median 39380000 23387000 15993000 28513000 15634000 12879000 10867000 7753100 3113900 12613 1493 12946 45633;45634;45635;45636 68743;68744;68745;68746 68743 4 VFDAIMNFK LPRTFCQLILDPIFKVFDAIMNFKKEETAK LDPIFKVFDAIMNFKKEETAKLIEKLDIKL K V F F K K 1 0 1 1 0 0 0 0 0 1 0 1 1 2 0 0 0 0 0 1 0 0 9 0 1083.5423 P13639;Q6PK56;B4DRE8;B4DMC6 P13639 300 308 EEF2 Elongation factor 2 yes no 2 0.03301 49.097 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2118000 0 2118000 0 0 0 2118000 0 2118000 12614 1264 12947 45637 68747 68747 1 VFDDESDEKEDEEYADEK EDSDEKEEEEDTYEKVFDDESDEKEDEEYA DESDEKEDEEYADEKGLEAADKKAEEGDAD K V F E K G 1 0 0 5 0 0 6 0 0 0 0 2 0 1 0 1 0 0 1 1 0 0 18 1 2190.8601 O43719 O43719 637 654 HTATSF1 HIV Tat-specific factor 1 yes yes 3 0.0011883 68.576 2 0.37832 0.46133 10.262 2 Median 0.37832 0.46133 10.262 2 0 Median NaN NaN NaN 0 0 Median 4051100 2600100 1451100 4051100 2600100 1451100 0 0 0 12615 1187 12948 45638;45639 68748;68749;68750 68749 3 VFDFLVDSINK ACYTRDALAKALHARVFDFLVDSINKAMEK LHARVFDFLVDSINKAMEKDHEEYNIGVLD R V F N K A 0 0 1 2 0 0 0 0 0 1 1 1 0 2 0 1 0 0 0 2 0 0 11 0 1295.6762 Q4KMR3;Q12965;H0YLE5 Q4KMR3 363 373 MYO1E Unconventional myosin-Ie yes no 2 0.0044148 84.17 2 1 0.58461 0.72439 NaN 1 Median 0.58461 0.72439 NaN 1 0 Median NaN NaN NaN 0 0 Median 23607000 8698700 14908000 17201000 8698700 8502700 6405300 0 6405300 12616 1459 12949 45640;45641;45642 68751;68752;68753 68752 2 VFDGIPPPYDK PHKTKRGQAALDHLKVFDGIPPPYDKKKRM DHLKVFDGIPPPYDKKKRMVVPAALKVVRL K V F D K K 0 0 0 2 0 0 0 1 0 1 0 1 0 1 3 0 0 0 1 1 0 0 11 0 1246.6234 Q53H34;P40429;Q5QTS3;M0QYS1;Q8J015;Q0VGL3;Q6NVV1;Q9BSQ6 Q53H34 104 114 RPL13A;RPL13a;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 no no 2 1.1795E-05 117.7 6 1 0.7561 0.9999 3.5092 5 Median 0.7566 0.99534 1.383 4 0 Median 0.66148 1.0738 NaN 1 0 Median 1001800000 571610000 430190000 946670000 538420000 408260000 55127000 33191000 21936000 12617 1332;1712 12950 45643;45644;45645;45646;45647;45648;45649 68754;68755;68756;68757;68758;68759;68760;68761;68762;68763;68764;68765;68766;68767;68768;68769 68767 16 VFDLLNRK ELQVYATFFEIYSGKVFDLLNRKTKLRVLE FEIYSGKVFDLLNRKTKLRVLEDGKQQVQV K V F R K T 0 1 1 1 0 0 0 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 8 1 1003.5815 B0AZS5;O00139;B4DM85 B0AZS5 328 335 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A no no 3 0.033227 58.917 3 0.88436 1.1361 NaN 1 Median 0.88436 1.1361 NaN 1 0 Median NaN NaN NaN 0 0 Median 7245800 4382400 2863400 7245800 4382400 2863400 0 0 0 12618 664;1163 12951 45650;45651;45652 68770;68771;68772 68771 3 VFDLQFSTDSPR QNDDEKERLQRRRSRVFDLQFSTDSPRLLA RSRVFDLQFSTDSPRLLASPSSRSIDISAT R V F P R L 0 1 0 2 0 1 0 0 0 0 1 0 0 2 1 2 1 0 0 1 0 0 12 0 1410.6779 Q15003;B4DRG7;E9PHA2;A8K4T8;C9J470;C9JZP1 Q15003 72 83 NCAPH Condensin complex subunit 2 yes no 2 5.189E-21 176.95 4 2 0.59012 0.88868 15.551 5 Median 0.80466 1.0785 15.389 3 0 Plateau 0.51338 0.80962 13.177 2 0 Median 110850000 67334000 43514000 45797000 26462000 19335000 65052000 40873000 24179000 12619 1500 12952 45653;45654;45655;45656;45657;45658 68773;68774;68775;68776;68777;68778;68779;68780 68773 8 VFDPQNDKPSK LQQLRQETGLRLCEKVFDPQNDKPSKWWTC LCEKVFDPQNDKPSKWWTCFVKRQFMNKSL K V F S K W 0 0 1 2 0 1 0 0 0 0 0 2 0 1 2 1 0 0 0 1 0 0 11 1 1273.6303 Q2LE71;B2R4D5;O15145 Q2LE71 148 158 ARPC3 Actin-related protein 2/3 complex subunit 3 yes no 3 0.023998 29.936 1 1.0317 1.2675 NaN 1 Median 1.0317 1.2675 NaN 1 0 Median NaN NaN NaN 0 0 Median 7261000 3821200 3439700 7261000 3821200 3439700 0 0 0 12620 683 12953 45659 68781 68781 1 VFDPVPVGVTK ILPLHSQIPREEQRKVFDPVPVGVTKVILS EQRKVFDPVPVGVTKVILSTNIAETSITIN K V F T K V 0 0 0 1 0 0 0 1 0 0 0 1 0 1 2 0 1 0 0 4 0 0 11 0 1156.6492 Q08211 Q08211 698 708 DHX9 ATP-dependent RNA helicase A yes yes 2 0.0030562 86.882 3 0.70536 0.91901 13.882 3 Median 0.70536 0.91901 13.882 3 0 Median NaN NaN NaN 0 0 Median 360260000 215580000 144680000 360260000 215580000 144680000 0 0 0 12621 1448 12954 45660;45661;45662 68782;68783;68784 68784 3 VFELDLVTLR ETLKTQIEEMARSLKVFELDLVTLRSEKEN ARSLKVFELDLVTLRSEKENLTKQIQEKQG K V F L R S 0 1 0 1 0 0 1 0 0 0 3 0 0 1 0 0 1 0 0 2 0 0 10 0 1203.6863 P49454 P49454 2296 2305 CENPF Centromere protein F yes yes 2 6.0314E-10 169.44 4 2 0.75854 0.99945 9.8997 5 Median 0.72649 0.97311 11.29 4 0 Median 0.79665 1.0179 NaN 1 0 Median 27126000 15583000 11542000 22269000 12991000 9278000 4856800 2592300 2264500 12622 1351 12955 45663;45664;45665;45666;45667;45668 68785;68786;68787;68788;68789;68790;68791;68792 68785 8 VFESIGK ______________________________ ______________________________ K V F G K F 0 0 0 0 0 0 1 1 0 1 0 1 0 1 0 1 0 0 0 1 0 0 7 0 778.4225 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0;C9JW96;C9JZ20;E7ESE2;E9PCW0;D6RBK0;Q9BSE8 Q6PUJ7 5 11 HEL-S-54e;PHB;ZNF607 Prohibitin yes no 1;2 0.0036484 128.86 3 0.63551 0.81538 14.217 2 Median 0.63551 0.81538 14.217 2 0 Median NaN NaN NaN 0 0 Median 128270000 82437000 45831000 128270000 82437000 45831000 0 0 0 12623 600 12956 45669;45670;45671 68793;68794;68795 68793 3 VFEVNASNLEK KKIEKEIQQKWDTERVFEVNASNLEKQTSK DTERVFEVNASNLEKQTSKGKYFVTFPYPY R V F E K Q 1 0 2 0 0 0 2 0 0 0 1 1 0 1 0 1 0 0 0 2 0 0 11 0 1248.635 B4E266;B4DER1;B2RCM2;Q9P2J5;Q6NVI4;Q0VGM8;Q9P0T1;A0A087WXY1 B4E266 29 39 LARS Leucine--tRNA ligase, cytoplasmic yes no 2 0.016282 75.294 1 2 5.7706 8.5273 NaN 1 Median NaN NaN NaN 0 0 Median 5.7706 8.5273 NaN 1 0 Median 16588000 5449900 11138000 4480300 4480300 0 12108000 969640 11138000 12624 732 12957 45672;45673;45674 68796;68797;68798 68797 3 VFEVSLADLQNDEVAFR RTQGTKIASDGLKGRVFEVSLADLQNDEVA EVSLADLQNDEVAFRKFKLITEDVQGKNCL R V F F R K 2 1 1 2 0 1 2 0 0 0 2 0 0 2 0 1 0 0 0 3 0 0 17 0 1950.9687 Q6NXR8;P61247;A8K4W0;B7Z3M5;H0Y8L7;E9PFI5;D6RG13;D6RAT0;D6RB09;D6RI02;D6RAS7;D6RED7;D6RGE0 Q6NXR8 66 82 RPS3A 40S ribosomal protein S3a yes no 2 6.3177E-120 279.56 3 1 0.71932 0.98967 4.2066 4 Median 0.74305 1.0273 4.1993 3 0 Plateau 0.59857 0.96569 NaN 1 0 Median 359880000 213540000 146340000 267350000 154270000 113080000 92531000 59274000 33257000 12625 1393 12958 45675;45676;45677;45678 68799;68800;68801;68802;68803;68804;68805;68806;68807 68803 9 VFEVSLADLQNDEVAFRK RTQGTKIASDGLKGRVFEVSLADLQNDEVA VSLADLQNDEVAFRKFKLITEDVQGKNCLT R V F R K F 2 1 1 2 0 1 2 0 0 0 2 1 0 2 0 1 0 0 0 3 0 0 18 1 2079.0637 Q6NXR8;P61247;A8K4W0;B7Z3M5;H0Y8L7;E9PFI5;D6RG13;D6RAT0;D6RB09;D6RI02;D6RAS7;D6RED7;D6RGE0 Q6NXR8 66 83 RPS3A 40S ribosomal protein S3a yes no 2;3 5.4393E-65 182.15 8 3 0.76997 1.0188 9.2256 10 Median 0.78321 1.0369 8.5097 8 0 Median 0.53075 0.92669 11.497 2 0 Median 1532000000 885580000 646410000 1259300000 711490000 547790000 272710000 174080000 98623000 12626 1393 12959 45679;45680;45681;45682;45683;45684;45685;45686;45687;45688;45689 68808;68809;68810;68811;68812;68813;68814;68815;68816;68817;68818;68819;68820;68821;68822;68823;68824;68825;68826;68827 68821 20 VFFEQSK MARDLEQGDVSETIRVFFEQSKSFPPAAKS GDVSETIRVFFEQSKSFPPAAKSLLTIQEV R V F S K S 0 0 0 0 0 1 1 0 0 0 0 1 0 2 0 1 0 0 0 1 0 0 7 0 883.44397 P49916;B7Z6I3;K7ERZ5;K7EQB6 P49916 356 362 LIG3 DNA ligase 3;DNA ligase yes no 2 0.021175 64.757 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4956300 4956300 0 4956300 4956300 0 0 0 0 12627 1356 12960 45690;45691;45692 68828;68829;68830 68829 3 VFFQAEDR LHVRNLLSAYGEVGRVFFQAEDRFVRRKKK AYGEVGRVFFQAEDRFVRRKKKAAAAAGGK R V F D R F 1 1 0 1 0 1 1 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 8 0 1010.4821 A0A024R029;Q9ULW3 A0A024R029 75 82 ABT1 Activator of basal transcription 1 yes no 2 0.037599 47.574 1 1.0121 1.3017 NaN 1 Median NaN NaN NaN 0 0 Median 1.0121 1.3017 NaN 1 0 Median 3724100 1774700 1949500 0 0 0 3724100 1774700 1949500 12628 27 12961 45693 68831 68831 1 VFFTCNACGESVK ______________________________ ______________________________ M V F V K K 1 0 1 0 2 0 1 1 0 0 0 1 0 2 0 1 1 0 0 2 0 0 13 0 1517.6643 Q9NX58;A8K3Y5;D6RDJ1 Q9NX58 2 14 LYAR Cell growth-regulating nucleolar protein yes no 2 7.8176E-08 139.86 3 2 0.90889 1.2559 7.1804 4 Median 1.0365 1.3108 0.76793 2 0 Median 0.78173 1.1692 4.8312 2 0 Median 30795000 15987000 14809000 12094000 6224300 5869800 18701000 9762400 8938800 12629 1766 12962 45694;45695;45696;45697;45698 68832;68833;68834;68835;68836;68837;68838;68839;68840;68841 68833 10 VFFTCNACGESVKK ______________________________ MVFFTCNACGESVKKIQVEKHVSVCRNCEC M V F K K I 1 0 1 0 2 0 1 1 0 0 0 2 0 2 0 1 1 0 0 2 0 0 14 1 1645.7592 Q9NX58;A8K3Y5;D6RDJ1 Q9NX58 2 15 LYAR Cell growth-regulating nucleolar protein yes no 3 0.0026847 83.087 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1768700 1768700 0 1768700 1768700 0 0 0 0 12630 1766 12963 45699 68842 68842 1 VFGAPEVLENLEVK AEILLSNHYTSSEIRVFGAPEVLENLEVKS RVFGAPEVLENLEVKSGSPAVLAFAKEKSF R V F V K S 1 0 1 0 0 0 3 1 0 0 2 1 0 1 1 0 0 0 0 3 0 0 14 0 1542.8294 Q8TEM1 Q8TEM1 1711 1724 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.00019984 95.417 2 0.51048 0.64598 NaN 1 Median 0.51048 0.64598 NaN 1 0 Median NaN NaN NaN 0 0 Median 12283000 8124000 4159000 12283000 8124000 4159000 0 0 0 12631 1661 12964 45700;45701 68843;68844 68844 2 VFGVEGSSAFLECEPR LCSGDSSRPALLEHKVFGVEGSSAFLECEP FGVEGSSAFLECEPRSLQARVEWTFQRAGV K V F P R S 1 1 0 0 1 0 3 2 0 0 1 0 0 2 1 2 0 0 0 2 0 0 16 0 1782.8247 A0A0C4DGV8;A0A1S5UZH6;Q13214;B4DEK9;Q59FY7;Q6PI51 A0A0C4DGV8 585 600 SEMA3B Semaphorin-3B yes no 2 0.0032048 101.56 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 884170 884170 0 884170 884170 0 0 0 0 12632 430 12965 45702 68845 68845 1 VFHAGFGVVLGEDK AAAQMIGWYDPKVTRVFHAGFGVVLGEDKK RVFHAGFGVVLGEDKKKFKTRSGETVRLMD R V F D K K 1 0 0 1 0 0 1 3 1 0 1 1 0 2 0 0 0 0 0 3 0 0 14 0 1473.7616 P54136;B4DXW6 P54136 436 449 RARS Arginine--tRNA ligase, cytoplasmic yes no 3 0.0054735 50.088 3 0.61424 0.77252 6.7656 2 Median 0.61424 0.77252 6.7656 2 0 Median NaN NaN NaN 0 0 Median 12433000 7938800 4494300 12433000 7938800 4494300 0 0 0 12633 1373 12966 45703;45704;45705 68846;68847;68848;68849 68848 4 VFHLPTTTFIGGQESALPLR TVGGFYGLDESDLDKVFHLPTTTFIGGQES TTTFIGGQESALPLREIIRRLEMAYCQHIG K V F L R E 1 1 0 0 0 1 1 2 1 1 3 0 0 2 2 1 3 0 0 1 0 0 20 0 2183.1739 B4DF00;E9PDF2;E9PCR7;Q02218;A0A0D9SFS3;A0A140VJQ5;B4DH65;C9J4G7;A2VCT2;A2VCT3 B4DF00 136 155 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 3 0.00090213 32.156 1 0.38347 0.5145 NaN 1 Median 0.38347 0.5145 NaN 1 0 Median NaN NaN NaN 0 0 Median 7543900 5713700 1830200 7543900 5713700 1830200 0 0 0 12634 800 12967 45706 68850 68850 1 VFIGNLNTALVK SNVTNKNDPKSINSRVFIGNLNTALVKKSD NSRVFIGNLNTALVKKSDVETIFSKYGRVA R V F V K K 1 0 2 0 0 0 0 1 0 1 2 1 0 1 0 0 1 0 0 2 0 0 12 0 1287.7551 A8K4T9;Q53GL6;Q9UKM9;Q5QPL9;Q5QPM0;Q5QPM1;Q5QPM2;B4DSJ1 A8K4T9 23 34 RALY RNA-binding protein Raly yes no 2 0.0011217 89.561 3 1 0.78929 0.98892 18.184 3 Median 0.76296 0.95336 5.1783 2 0 Median 0.86439 1.2979 NaN 1 0 Median 79449000 47536000 31913000 59673000 37613000 22060000 19776000 9922600 9853000 12635 608 12968 45707;45708;45709;45710 68851;68852;68853;68854;68855;68856 68855 5 VFIGNLNTLVVK SNVTNKTDPRSMNSRVFIGNLNTLVVKKSD NSRVFIGNLNTLVVKKSDVEAIFSKYGKIV R V F V K K 0 0 2 0 0 0 0 1 0 1 2 1 0 1 0 0 1 0 0 3 0 0 12 0 1315.7864 B2R5W2;G3V4C1;G3V4W0;B4DY08;B3KX96;B2R603;G3V2Q1;P07910;G3V576;A8K9A4;D3DPI2;G3V5X6;G3V3K6;G3V251;G3V555;G3V575;Q6PKD2;A0A0G2JPF8;A0A0G2JNQ3;P0DMR1;O60812;B7ZW38;B2RXH8;B4DMJ1;B4DSU6;G3V4M8;Q569J8;G3V2H6 B2R5W2 18 29 HNRNPC;hCG_1641229;HNRPCL1;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2;HNRPC Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 yes no 2 1.4043E-07 147.75 4 2 0.66461 0.95253 30.422 4 Median 0.55235 0.72303 4.3933 2 0 Median 0.7748 1.2223 0.67231 2 0 Median 1087900000 712490000 375390000 594590000 451250000 143340000 493290000 261240000 232050000 12636 694 12969 45711;45712;45713;45714;45715;45716 68857;68858;68859;68860;68861;68862;68863 68858 7 VFIMDNCEELIPEYLNFIR ENRKKKNNIKLYVRRVFIMDNCEELIPEYL DNCEELIPEYLNFIRGVVDSEDLPLNISRE R V F I R G 0 1 2 1 1 0 3 0 0 3 2 0 1 2 1 0 0 0 1 1 0 0 19 0 2414.165 K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q96HX7 K9JA46 368 386 EL52;HSP90AA1 Heat shock protein HSP 90-alpha yes no 3 0.0034879 54.288 2 0.3002 0.40224 34.683 2 Median 0.3002 0.40224 34.683 2 0 Median NaN NaN NaN 0 0 Median 32804000 25110000 7694400 32804000 25110000 7694400 0 0 0 12637 1155 12970 45717;45718 68864;68865 68864 412 2 VFLDFFTYAPPK MAQKEAVIKHSLVHKVFLDFFTYAPPKLRS VHKVFLDFFTYAPPKLRSEMIEAIREAVVY K V F P K L 1 0 0 1 0 0 0 0 0 0 1 1 0 3 2 0 1 0 1 1 0 0 12 0 1443.7438 Q15397;B2RDG4 Q15397 331 342 KIAA0020 Pumilio domain-containing protein KIAA0020 yes no 2 1.6112E-07 109.83 5 1 0.76519 0.94164 27.57 3 Median 0.80553 1.0167 10.852 2 0 Median 0.44385 0.64272 NaN 1 0 Median 50546000 34486000 16060000 45359000 30497000 14862000 5186800 3988700 1198200 12638 1511 12971 45719;45720;45721;45722;45723;45724 68866;68867;68868;68869;68870;68871;68872;68873 68870 8 VFLDVLMK FEVLKRNGWEESRIKVFLDVLMKEVLCPES WEESRIKVFLDVLMKEVLCPESQSPNGVRF K V F M K E 0 0 0 1 0 0 0 0 0 0 2 1 1 1 0 0 0 0 0 2 0 0 8 0 963.54633 Q14684;Q6PJM8 Q14684 144 151 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 2 0.0271 55.676 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5195500 5195500 0 0 0 0 5195500 5195500 0 12639 1493 12972 45725;45726 68874;68875 68874 2 VFLENVIR RISGLIYEETRGVLKVFLENVIRDAVTYTE ETRGVLKVFLENVIRDAVTYTEHAKRKTVT K V F I R D 0 1 1 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 2 0 0 8 0 988.57057 B2R4R0;P62805;Q0VAS5;Q6B823 B2R4R0 61 68 HIST1H4H;HIST1H4A Histone H4 yes no 1;2 1.6102E-24 200.96 233 99 0.69314 0.94967 12.077 166 Plateau 0.70581 0.95549 8.3267 116 0 Median 0.56446 0.90443 14.095 50 0 Plateau 33527000000 29495000000 4032600000 22703000000 19847000000 2856100000 10824000000 9647600000 1176500000 12640 686 12973 45727;45728;45729;45730;45731;45732;45733;45734;45735;45736;45737;45738;45739;45740;45741;45742;45743;45744;45745;45746;45747;45748;45749;45750;45751;45752;45753;45754;45755;45756;45757;45758;45759;45760;45761;45762;45763;45764;45765;45766;45767;45768;45769;45770;45771;45772;45773;45774;45775;45776;45777;45778;45779;45780;45781;45782;45783;45784;45785;45786;45787;45788;45789;45790;45791;45792;45793;45794;45795;45796;45797;45798;45799;45800;45801;45802;45803;45804;45805;45806;45807;45808;45809;45810;45811;45812;45813;45814;45815;45816;45817;45818;45819;45820;45821;45822;45823;45824;45825;45826;45827;45828;45829;45830;45831;45832;45833;45834;45835;45836;45837;45838;45839;45840;45841;45842;45843;45844;45845;45846;45847;45848;45849;45850;45851;45852;45853;45854;45855;45856;45857;45858;45859;45860;45861;45862;45863;45864;45865;45866;45867;45868;45869;45870;45871;45872;45873;45874;45875;45876;45877;45878;45879;45880;45881;45882;45883;45884;45885;45886;45887;45888;45889;45890;45891;45892;45893;45894;45895;45896;45897;45898;45899;45900;45901;45902;45903;45904;45905;45906;45907;45908;45909;45910;45911;45912;45913;45914;45915;45916;45917;45918;45919;45920;45921;45922;45923;45924;45925;45926;45927;45928;45929;45930;45931;45932;45933;45934;45935;45936;45937;45938;45939;45940;45941;45942;45943;45944;45945;45946;45947;45948;45949;45950;45951;45952;45953;45954;45955;45956;45957;45958;45959;45960;45961;45962;45963;45964;45965;45966;45967;45968;45969;45970;45971;45972;45973;45974;45975;45976;45977;45978;45979;45980;45981;45982;45983;45984;45985;45986;45987;45988;45989;45990;45991;45992;45993;45994;45995;45996;45997;45998;45999;46000;46001;46002;46003;46004;46005;46006;46007;46008;46009;46010;46011;46012;46013;46014;46015;46016;46017;46018;46019;46020;46021;46022;46023;46024;46025;46026;46027;46028;46029;46030;46031;46032;46033;46034;46035;46036;46037;46038;46039;46040;46041;46042;46043;46044;46045;46046;46047;46048;46049;46050;46051;46052;46053;46054;46055;46056;46057;46058 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69117 642 VFLENVIRDAVTYTEHAK RISGLIYEETRGVLKVFLENVIRDAVTYTE ENVIRDAVTYTEHAKRKTVTAMDVVYALKR K V F A K R 2 1 1 1 0 0 2 0 1 1 1 1 0 1 0 0 2 0 1 3 0 0 18 1 2104.0953 B2R4R0;P62805;Q0VAS5 B2R4R0 61 78 HIST1H4H;HIST1H4A Histone H4 yes no 3;4 1.4191E-64 177.64 14 11 0.75102 1.1284 18.296 23 Median 0.74942 0.99247 14.486 12 0 Median 0.77865 1.3336 6.9207 11 0 Median 3407200000 1950400000 1456800000 1785500000 1035500000 750060000 1621700000 914960000 706750000 12641 686 12974 46059;46060;46061;46062;46063;46064;46065;46066;46067;46068;46069;46070;46071;46072;46073;46074;46075;46076;46077;46078;46079;46080;46081;46082;46083 69519;69520;69521;69522;69523;69524;69525;69526;69527;69528;69529;69530;69531;69532;69533;69534;69535;69536;69537;69538;69539;69540;69541;69542;69543;69544;69545;69546;69547;69548;69549;69550;69551;69552;69553;69554;69555;69556;69557;69558;69559;69560;69561;69562;69563;69564;69565;69566;69567 69541 48 VFLHLADIYAK TKVFERAVQYNEPLKVFLHLADIYAKSEKF EPLKVFLHLADIYAKSEKFQEAGELYNRML K V F A K S 2 0 0 1 0 0 0 0 1 1 2 1 0 1 0 0 0 0 1 1 0 0 11 0 1288.718 Q14690 Q14690 1693 1703 PDCD11 Protein RRP5 homolog yes yes 3 0.013909 75.566 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6859000 5103800 1755200 6859000 5103800 1755200 0 0 0 12642 1494 12975 46084;46085 69568;69569 69569 2 VFLIYEGYEGLVEGGENIK AVRAVTRMGIYVGAKVFLIYEGYEGLVEGG YEGYEGLVEGGENIKQANWLSVSNIIQLGG K V F I K Q 0 0 1 0 0 0 4 4 0 2 2 1 0 1 0 0 0 0 2 2 0 0 19 0 2128.0728 P17858;B4E108 P17858 48 66 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 2 0.0013874 91.032 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 576930 576930 0 576930 576930 0 0 0 0 12643 1279 12976 46086 69570 69570 1 VFLLDR KTGKFLKRFTDEESRVFLLDRGNTRDKEAS KRFTDEESRVFLLDRGNTRDKEASKEKGSE R V F D R G 0 1 0 1 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 6 0 761.44357 Q6DCA8;E9PK09;E9PQN2;E9PKI6;E9PK91;Q9NYF8;H0YF00 Q6DCA8 347 352 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2 0.03421 114.6 3 1 0.49118 0.66351 23.069 4 Median 0.49799 0.67737 12.557 3 0 Plateau 0.64968 0.93561 NaN 1 0 Median 40969000 25157000 15812000 29691000 18365000 11326000 11278000 6792600 4485500 12644 1036 12977 46087;46088;46089;46090 69571;69572;69573;69574 69571 4 VFLLGEEVAQYDGAYK AINQGMDEELERDEKVFLLGEEVAQYDGAY FLLGEEVAQYDGAYKVSRGLWKKYGDKRII K V F Y K V 2 0 0 1 0 1 2 2 0 0 2 1 0 1 0 0 0 0 2 2 0 0 16 0 1800.8934 F8WF02;P11177;C9J634 F8WF02 53 68 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 2 4.6501E-09 125.28 2 0.49144 0.65623 NaN 1 Median 0.49144 0.65623 NaN 1 0 Median NaN NaN NaN 0 0 Median 2718100 1664100 1054100 2718100 1664100 1054100 0 0 0 12645 1074 12978 46091;46092 69575;69576 69575 2 VFLNGNK VRRAYDIAGSTKDVKVFLNGNKLPVKGFRS AGSTKDVKVFLNGNKLPVKGFRSYVDMYLK K V F N K L 0 0 2 0 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 7 0 790.43374 P11388 P11388 255 261 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.011003 106.29 1 0.85429 1.0612 NaN 1 Median 0.85429 1.0612 NaN 1 0 Median NaN NaN NaN 0 0 Median 50871000 27729000 23142000 50871000 27729000 23142000 0 0 0 12646 1256 12979 46093 69577 69577 1 VFLNILPPLTNSK FTLSSVSGESLDLLKVFLNILPPLTNSKEQ LKVFLNILPPLTNSKEQEELMQQLTEFQVD K V F S K E 0 0 2 0 0 0 0 0 0 1 3 1 0 1 2 1 1 0 0 1 0 0 13 0 1454.8497 A8K2K2;A0A024RD30;Q9BX10 A8K2K2 299 311 GTPBP2 GTP-binding protein 2 yes no 2 0.0015512 120.06 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 723580 0 723580 723580 0 723580 0 0 0 12647 310 12980 46094 69578 69578 1 VFLQDHCLAEGYGTK EYKYEMMPNRTWRCRVFLQDHCLAEGYGTK VFLQDHCLAEGYGTKKTSKHAAADEALKIL R V F T K K 1 0 0 1 1 1 1 2 1 0 2 1 0 1 0 0 1 0 1 1 0 0 15 0 1736.8192 Q6NUN2;A3F769;A3F768;O15226;A2I829 Q6NUN2 380 394 NKRF;NRF NF-kappa-B-repressing factor yes no 3 0.0016907 102.52 3 0.45631 0.58496 44.815 2 Median 0.45631 0.58496 44.815 2 0 Median NaN NaN NaN 0 0 Median 13094000 8311500 4782900 13094000 8311500 4782900 0 0 0 12648 541 12981 46095;46096;46097 69579;69580;69581;69582 69581 4 VFNCISYSPLCK DVESGSLKSTLTGNKVFNCISYSPLCKRLA GNKVFNCISYSPLCKRLASGSTDRHIRLWD K V F C K R 0 0 1 0 2 0 0 0 0 1 1 1 0 1 1 2 0 0 1 1 0 0 12 0 1486.6949 Q53T99;Q9GZL7;B4DRY7 Q53T99 299 310 WDR12 Ribosome biogenesis protein WDR12 yes no 2 7.8577E-06 128.51 4 0.90517 1.149 3.6033 4 Median 0.90517 1.149 3.6033 4 0 Median NaN NaN NaN 0 0 Median 54913000 28925000 25989000 54913000 28925000 25989000 0 0 0 12649 1543 12982 46098;46099;46100;46101 69583;69584;69585;69586;69587;69588;69589 69588 7 VFNETPINPR PFQHLEKSAVLQEARVFNETPINPRKCAHI LQEARVFNETPINPRKCAHILTKILYLINQ R V F P R K 0 1 2 0 0 0 1 0 0 1 0 0 0 1 2 0 1 0 0 1 0 0 10 0 1185.6142 Q9Y678 Q9Y678 33 42 COPG1 Coatomer subunit gamma-1 yes yes 2 0.016922 53.968 1 2 3.1802 4.1962 NaN 1 Median NaN NaN NaN 0 0 Median 3.1802 4.1962 NaN 1 0 Median 6477300 884900 5592400 1793600 0 1793600 4683800 884900 3798900 12650 1832 12983 46102;46103;46104 69590;69591;69592 69591 3 VFNGEPGAHDAK LPFIPADKLKDLTSRVFNGEPGAHDAKLRF TSRVFNGEPGAHDAKLRFESQEMKGIGTPP R V F A K L 2 0 1 1 0 0 1 2 1 0 0 1 0 1 1 0 0 0 0 1 0 0 12 0 1240.5836 O96028;Q05CW4;D6R9V2;D6RIS1 O96028 86 97 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 2 0.0030317 102.06 2 1 0.87748 1.1494 12.506 2 Median 0.96239 1.2557 NaN 1 0 Median 0.80006 1.0521 NaN 1 0 Median 5065600 2613500 2452100 2363700 1100300 1263400 2701900 1513200 1188700 12651 1228 12984 46105;46106;46107 69593;69594;69595 69595 3 VFNTGGAPR NARPLVPEVSIKTPRVFNTGGAPRILALDC SIKTPRVFNTGGAPRILALDCGLKYNQIRC R V F P R I 1 1 1 0 0 0 0 2 0 0 0 0 0 1 1 0 1 0 0 1 0 0 9 0 917.47191 Q53SY7;F8VPD4;P27708;G1UI39 Q53SY7 95 103 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.0026016 79.713 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2276800 2276800 0 2276800 2276800 0 0 0 0 12652 1060 12985 46108 69596 69596 1 VFNTTPDDLDLHVIYDVSHNIAK NRSSMTFLTRQAFAKVFNTTPDDLDLHVIY LDLHVIYDVSHNIAKVEQHVVDGKERTLLV K V F A K V 1 0 2 4 0 0 0 0 2 2 2 1 0 1 1 1 2 0 1 3 0 0 23 0 2625.3075 Q9Y3I0;B4DNA0 Q9Y3I0 335 357 RTCB tRNA-splicing ligase RtcB homolog yes no 3;4 0.00013323 63.937 3 0.70383 0.8862 14.844 3 Median 0.70383 0.8862 14.844 3 0 Median NaN NaN NaN 0 0 Median 66466000 37094000 29372000 66466000 37094000 29372000 0 0 0 12653 1819 12986 46109;46110;46111 69597;69598;69599;69600 69599 4 VFNVFCLYGNVEK LMVYGLDQSKMNCDRVFNVFCLYGNVEKVK DRVFNVFCLYGNVEKVKFMKSKPGSAMVEM R V F E K V 0 0 2 0 1 0 1 1 0 0 1 1 0 2 0 0 0 0 1 3 0 0 13 0 1587.7755 B2R959;Q6NTA2;P14866;M0QXS5;M0QYT0;M0R076 B2R959 368 380 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 2 4.1963E-21 147.28 4 2 0.57898 0.69859 58.829 5 Median 0.5456 0.69777 5.3259 3 0 Median 1.3167 1.9618 14.282 2 0 Median 64089000 36545000 27544000 46635000 29845000 16790000 17455000 6699900 10755000 12654 719 12987 46112;46113;46114;46115;46116;46117 69601;69602;69603;69604;69605;69606;69607;69608 69604 8 VFPGSTTEDYNLIVIER LDLDLTADSQPPVFKVFPGSTTEDYNLIVI PGSTTEDYNLIVIERGAAAAATGQPGTAPA K V F E R G 0 1 1 1 0 0 2 1 0 2 1 0 0 1 1 1 2 0 1 2 0 0 17 0 1951.9891 B2R8R5;Q13263;M0R0K9 B2R8R5 508 524 TRIM28 Transcription intermediary factor 1-beta yes no 2 1.6055E-08 114.56 5 1 0.39543 0.52677 78.934 5 Median 0.3854 0.51259 13.293 4 0 Median 2.0145 3.0281 NaN 1 0 Median 103260000 74035000 29228000 87310000 68081000 19229000 15953000 5954000 9999100 12655 716 12988 46118;46119;46120;46121;46122;46123 69609;69610;69611;69612;69613;69614;69615;69616;69617;69618 69611 10 VFPMPLPR ETRGHPHSASSPSERVFPMPLPRKAPLNIP ASSPSERVFPMPLPRKAPLNIPGTPVLEDF R V F P R K 0 1 0 0 0 0 0 0 0 0 1 0 1 1 3 0 0 0 0 1 0 0 8 0 955.53134 Q15003;B4DRG7;E9PHA2;A8K4T8;C9J470;C9JZP1 Q15003 33 40 NCAPH Condensin complex subunit 2 yes no 2 0.029556 71.949 1 1 0.70355 1.077 35.331 2 Median 0.95984 1.3826 NaN 1 0 Median 0.5157 0.83888 NaN 1 0 Median 48072000 32208000 15863000 2586600 1371900 1214800 45485000 30836000 14649000 12656 1500 12989;12990 46124;46125 69619;69620 69620 2 VFQFLNAK IYPGHGRRYARTDGKVFQFLNAKCESAFLS YARTDGKVFQFLNAKCESAFLSKRNPRQIN K V F A K C 1 0 1 0 0 1 0 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 8 0 965.53345 C9JXB8;C9JNW5;V9HW01;P83731 C9JXB8 28 35 RPL24;HEL-S-310 60S ribosomal protein L24 yes no 1;2 6.5942E-06 183.89 11 4 0.8753 1.118 22.528 10 Median 0.92753 1.1622 5.0939 7 0 Median 0.49006 0.77512 7.0189 3 0 Plateau 4427900000 2443600000 1984300000 3406900000 1767500000 1639400000 1021000000 676020000 344960000 12657 942 12991 46126;46127;46128;46129;46130;46131;46132;46133;46134;46135;46136;46137;46138;46139;46140 69621;69622;69623;69624;69625;69626;69627;69628;69629;69630;69631;69632;69633;69634;69635;69636;69637;69638;69639;69640;69641;69642;69643;69644;69645;69646;69647;69648;69649;69650;69651;69652;69653;69654;69655;69656;69657;69658;69659;69660;69661;69662;69663 69631 42 VFQGFFTGR SKQNLVPFRDSKLTRVFQGFFTGRGRSCMI DSKLTRVFQGFFTGRGRSCMIVNVNPCAST R V F G R G 0 1 0 0 0 1 0 2 0 0 0 0 0 3 0 0 1 0 0 1 0 0 9 0 1057.5345 O95235 O95235 467 475 KIF20A Kinesin-like protein KIF20A yes yes 2 0.0006818 116.25 4 2 0.8111 1.0966 16.114 6 Median 0.81957 1.1066 0.99174 4 0 Median 0.50193 0.80959 1.7164 2 0 Median 232240000 133460000 98777000 128220000 64750000 63474000 104020000 68715000 35303000 12658 1215 12992 46141;46142;46143;46144;46145;46146 69664;69665;69666;69667;69668;69669;69670;69671;69672;69673;69674 69669 11 VFQHNELKK KIIQEKYRANKKKQKVFQHNELKKETCVQA NKKKQKVFQHNELKKETCVQAGFQDMNIKK K V F K K E 0 0 1 0 0 1 1 0 1 0 1 2 0 1 0 0 0 0 0 1 0 0 9 1 1141.6244 Q8IZT6;Q4G1H2;Q4G1H0;A0A087WV76 Q8IZT6 2596 2604 ASPM Abnormal spindle-like microcephaly-associated protein yes no 2 0.0096813 101.72 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 267420 267420 0 267420 267420 0 0 0 0 12659 1631 12993 46147 69675 69675 1 VFQSSTSQEQVYNDCAK EDTVVIASKPYAFDRVFQSSTSQEQVYNDC QSSTSQEQVYNDCAKKIVKDVLEGYNGTIF R V F A K K 1 0 1 1 1 3 1 0 0 0 0 1 0 1 0 3 1 0 1 2 0 0 17 0 1989.8738 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;M1V490;M1VPF9;M1V481;M1VPF7;M1VRN0;M1VKI9;M1VE89;Q6P164;Q2TA90;Q66K46 V9HW29 51 67 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5B-RET(NM_020630)_K22;R12;KIF5B-RET(NM_020975)_K22;R12;KIF5B-ALK_K17;A20;KIF5B-RET(NM_020630)_K15;R12;KIF5B-RET(NM_020975)_K15;R12;KIF5B-RET(NM_020630)_K16;R12;KIF5B-RET(NM_020975)_K16;R12 Kinesin-like protein;Kinesin-1 heavy chain yes no 2 6.0064E-07 124.21 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 789840 0 789840 789840 0 789840 0 0 0 12660 978 12994 46148;46149 69676;69677 69677 2 VFQTEAELQEVISDLQSK QLTDENQSCCPVCQRVFQTEAELQEVISDL TEAELQEVISDLQSKLRLAPDKLKSTESEL R V F S K L 1 0 0 1 0 3 3 0 0 1 2 1 0 1 0 2 1 0 0 2 0 0 18 0 2063.0423 Q92878;E7EN38;Q32P42 Q92878 687 704 RAD50 DNA repair protein RAD50 yes no 2 5.4805E-97 254.1 4 0.4069 0.53534 3.8186 3 Median 0.4069 0.53534 3.8186 3 0 Median NaN NaN NaN 0 0 Median 16546000 13091000 3454800 16546000 13091000 3454800 0 0 0 12661 1676 12995 46150;46151;46152;46153 69678;69679;69680;69681 69678 4 VFSATLGLVDIVK SGLEHSAHVLEKGGKVFSATLGLVDIVKGT GKVFSATLGLVDIVKGTNSYYKLQLLEDDK K V F V K G 1 0 0 1 0 0 0 1 0 1 2 1 0 1 0 1 1 0 0 3 0 0 13 0 1360.7966 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 552 564 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 1.7197E-17 147.74 5 2 0.93711 1.2331 48.267 6 Median 0.98831 1.2911 11.063 4 0 Median 0.33582 0.53131 3.8898 2 0 Median 881270000 499440000 381830000 640030000 324930000 315090000 241240000 174500000 66735000 12662 107 12996 46154;46155;46156;46157;46158;46159;46160 69682;69683;69684;69685;69686;69687;69688;69689;69690;69691;69692;69693;69694 69687 13 VFSDEVQQQAQLSTIR VHPNYHKEPFLQQLKVFSDEVQQQAQLSTI FSDEVQQQAQLSTIRSFLKLYTTMPVAKLA K V F I R S 1 1 0 1 0 4 1 0 0 1 1 0 0 1 0 2 1 0 0 2 0 0 16 0 1847.9377 B0QY90;B4DQF6;B3KPB9;B0QY89;Q9Y262;Q7Z5X3;Q8N7H0;B3KNG0 B0QY90 348 363 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2 1.1823E-09 141.58 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2416700 2416700 0 2416700 2416700 0 0 0 0 12663 666 12997 46161;46162 69695;69696 69695 2 VFSIGPVFR PQLYKQMCICADFEKVFSIGPVFRAEDSNT CADFEKVFSIGPVFRAEDSNTHRHLTEFVG K V F F R A 0 1 0 0 0 0 0 1 0 1 0 0 0 2 1 1 0 0 0 2 0 0 9 0 1020.5757 D3DP78;A0A140VJW5;P14868;Q53T60 D3DP78 232 240 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.00034983 117.93 4 2 0.61619 0.83305 67.955 6 Median 0.56537 0.77192 10.466 4 0 Median 2.1551 2.8242 11.707 2 0 Median 44969000 25266000 19703000 36001000 22471000 13530000 8968500 2795600 6172900 12664 504 12998 46163;46164;46165;46166;46167;46168 69697;69698;69699;69700;69701;69702;69703;69704;69705 69700 9 VFSLLQK CCSSLKETHFPFAIRVFSLLQKKIKKLESV THFPFAIRVFSLLQKKIKKLESVITAVEIP R V F Q K K 0 0 0 0 0 1 0 0 0 0 2 1 0 1 0 1 0 0 0 1 0 0 7 0 833.50109 B2RWN5;Q9H583;Q5T3Q7;A2VDI1 B2RWN5 729 735 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.012551 117.56 2 2 0.59521 0.88056 12.276 3 Median 0.81056 1.023 NaN 1 0 Median 0.56067 0.84037 6.6077 2 0 Median 42757000 28990000 13767000 22437000 15715000 6722200 20320000 13276000 7044400 12665 748 12999 46169;46170;46171;46172 69706;69707;69708;69709;69710;69711;69712 69706 7 VFSLSSEFK NQLLKPTLSEIELFRVFSLSSEFKNITVRE EIELFRVFSLSSEFKNITVREEEKLELQKL R V F F K N 0 0 0 0 0 0 1 0 0 0 1 1 0 2 0 3 0 0 0 1 0 0 9 0 1042.5335 O75643;A4FU77;Q9H8B9 O75643 1017 1025 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.00089911 104.44 4 1.0147 1.3 NaN 1 Median 1.0147 1.3 NaN 1 0 Median NaN NaN NaN 0 0 Median 26633000 19640000 6993200 26633000 19640000 6993200 0 0 0 12666 1206 13000 46173;46174;46175;46176 69713;69714;69715;69716 69716 4 VFTSWTGGGAAASR SCSATGTNRSDQYGRVFTSWTGGGAAASRL RVFTSWTGGGAAASRLSDWLDPASTGAQFI R V F S R L 3 1 0 0 0 0 0 3 0 0 0 0 0 1 0 2 2 1 0 1 0 0 14 0 1366.663 CON__P15636 CON__P15636 435 448 yes yes 2 6.8597E-08 128.28 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1570900000 1570900000 0 0 0 0 1570900000 1570900000 0 + 12667 962 13001 46177 69717 69717 1 VFTTGFSR EGARPMRAIFLADGKVFTTGFSRMSERQLA IFLADGKVFTTGFSRMSERQLALWDPENLE K V F S R M 0 1 0 0 0 0 0 1 0 0 0 0 0 2 0 1 2 0 0 1 0 0 8 0 913.46577 A0A024R5K1;Q9BR76;Q9NSK3;A0A087WW53;F5H390;Q59F81;B4DIU2 A0A024R5K1 234 241 CORO1B;DKFZp762I166 Coronin;Coronin-1B yes no 2 0.017887 91.9 3 0.88015 1.1871 1.7529 2 Median 0.88015 1.1871 1.7529 2 0 Median NaN NaN NaN 0 0 Median 51552000 23970000 27582000 51552000 23970000 27582000 0 0 0 12668 145 13002 46178;46179;46180 69718;69719;69720 69720 3 VFVDFEGISLR KGEVVPENGFEVFRRVFVDFEGISLRRKFL VFRRVFVDFEGISLRRKFLNGLEPENIHMM R V F L R R 0 1 0 1 0 0 1 1 0 1 1 0 0 2 0 1 0 0 0 2 0 0 11 0 1280.6765 Q03164 Q03164 1997 2007 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 0.012193 104.05 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2777800 0 2777800 2777800 0 2777800 0 0 0 12669 1438 13003 46181 69721 69721 1 VFVEDDENSSQK KTPQAPFPTCPNRKKVFVEDDENSSQKRSV RKKVFVEDDENSSQKRSVIVCQSRNEAQGK K V F Q K R 0 0 1 2 0 1 2 0 0 0 0 1 0 1 0 2 0 0 0 2 0 0 12 0 1395.6154 Q9ULJ3;Q5H9S0;B4DTN6 Q9ULJ3 135 146 ZBTB21;DKFZp781N1974 Zinc finger and BTB domain-containing protein 21 yes no 2 0.024381 38.567 1 2 0.6929 0.95801 33.875 3 Median 0.46605 0.5967 NaN 1 0 Median 0.76758 1.0498 12.938 2 0 Median 12429000 7361000 5068100 3875200 2242200 1633000 8553900 5118800 3435100 12670 1790 13004 46182;46183;46184 69722;69723;69724 69723 3 VFVGGLSPDTSEEQIK PKRAKALKGKEPPKKVFVGGLSPDTSEEQI FVGGLSPDTSEEQIKEYFGAFGEIENIELP K V F I K E 0 0 0 1 0 1 2 2 0 1 1 1 0 1 1 2 1 0 0 2 0 0 16 0 1704.857 B4DTA2;A0A087WUK2;A0A024RDF6;O14979 B4DTA2 86 101 HNRNPDL;HNRPDL Heterogeneous nuclear ribonucleoprotein D-like yes no 2 3.7251E-05 61.235 1 0.49741 0.63038 NaN 1 Median 0.49741 0.63038 NaN 1 0 Median NaN NaN NaN 0 0 Median 6108900 3637500 2471400 6108900 3637500 2471400 0 0 0 12671 315 13005 46185 69725 69725 1 VFYTGQVVK PKHELSTEYIPDPERVFYTGQVVKVVVLNC IPDPERVFYTGQVVKVVVLNCEPSKERMLL R V F V K V 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 1 0 1 3 0 0 9 0 1039.5702 Q14690;B4DH82;B4DES7 Q14690 585 593 PDCD11 Protein RRP5 homolog yes no 2 0.0019268 95.741 4 2 0.96442 1.1905 7.6655 6 Median 0.98175 1.2148 4.8045 4 0 Median 0.71536 1.0833 0.93892 2 0 Median 100100000 52303000 47798000 74205000 36007000 38199000 25896000 16297000 9599000 12672 1494 13006 46186;46187;46188;46189;46190;46191 69726;69727;69728;69729;69730;69731;69732;69733;69734;69735 69732 10 VGAAEIISR NYRQLVDTTVELANKVGAAEIISRIVDDLK VELANKVGAAEIISRIVDDLKDEAEQYRKM K V G S R I 2 1 0 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 0 1 0 0 9 0 914.51853 O75533 O75533 844 852 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.0017537 82.426 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3594200 3594200 0 3594200 3594200 0 0 0 0 12673 1204 13007 46192 69736 69736 1 VGAEELTADQNLK VKSHFIEIFLEELTKVGAEELTADQNLKFI TKVGAEELTADQNLKFIDPFCRIAARTKDS K V G L K F 2 0 1 1 0 1 2 1 0 0 2 1 0 0 0 0 1 0 0 1 0 0 13 0 1386.6991 Q6PJJ2;P56182;B4DZM3;Q53FR7;Q96J73 Q6PJJ2 185 197 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 2 4.3564E-23 218.11 4 2 0.77512 1.0809 12.925 6 Median 0.83325 1.0393 14.758 4 0 Median 0.71581 1.1463 4.7622 2 0 Median 276480000 152740000 123740000 167180000 87764000 79413000 109300000 64973000 44329000 12674 1381 13008 46193;46194;46195;46196;46197;46198 69737;69738;69739;69740;69741;69742;69743;69744;69745;69746 69741 10 VGAGAGAAPFREVDEISPEDDQR PFYERVRPAYSLEPRVGAGAGAAPFREVDE PFREVDEISPEDDQRANRTLFLGNLDITVT R V G Q R A 4 2 0 3 0 1 3 3 0 1 0 0 0 1 2 1 0 0 0 2 0 0 23 1 2385.1197 A0A087WWP4;Q96T37 A0A087WWP4 305 327 RBM15 Putative RNA-binding protein 15 yes no 3 4.0099E-06 86.189 3 0.5493 0.74235 12.788 2 Median 0.5493 0.74235 12.788 2 0 Median NaN NaN NaN 0 0 Median 19076000 14458000 4617700 19076000 14458000 4617700 0 0 0 12675 355 13009 46199;46200;46201 69747;69748;69749;69750;69751;69752 69747 6 VGDDVEFEVSSDR FFHCSQYNGNLQDLKVGDDVEFEVSSDRRT LKVGDDVEFEVSSDRRTGKPIAVKLVKIKQ K V G D R R 0 1 0 3 0 0 2 1 0 0 0 0 0 1 0 2 0 0 0 3 0 0 13 0 1452.6369 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLD4 Q9GZV0 65 77 CSDE1;UNR Cold shock domain-containing protein E1 yes no 2 0.023822 43.297 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1464600 1464600 0 1464600 1464600 0 0 0 0 12676 31 13010 46202 69753 69753 1 VGDFVATDLDTGRPSTTVR SKTYVVTGNMGSNDKVGDFVATDLDTGRPS VATDLDTGRPSTTVRYVMGNNPADLLAVDS K V G V R Y 1 2 0 3 0 0 0 2 0 0 1 0 0 1 1 1 4 0 0 3 0 0 19 1 2006.0069 Q02413 Q02413 404 422 DSG1 Desmoglein-1 yes yes 3 4.3251E-05 62.203 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10315000 10315000 0 10315000 10315000 0 0 0 0 12677 1435 13011 46203;46204 69754;69755 69755 2 VGDGDLSAEEIPENEVSLR SPFVPEETMEEQKTKVGDGDLSAEEIPENE DLSAEEIPENEVSLRRAVSKKKTALGKNHS K V G L R R 1 1 1 2 0 0 4 2 0 1 2 0 0 0 1 2 0 0 0 2 0 0 19 0 2027.9647 Q14684;Q6PJM8 Q14684 239 257 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 2 1.2723E-18 154.47 4 0.67836 0.9109 2.0561 3 Plateau 0.67836 0.9109 2.0561 3 0 Plateau NaN NaN NaN 0 0 Median 21549000 9251300 12297000 21549000 9251300 12297000 0 0 0 12678 1493 13012 46205;46206;46207;46208 69756;69757;69758;69759;69760;69761;69762 69756 7 VGDGDLSAEEIPENEVSLRR SPFVPEETMEEQKTKVGDGDLSAEEIPENE LSAEEIPENEVSLRRAVSKKKTALGKNHSR K V G R R A 1 2 1 2 0 0 4 2 0 1 2 0 0 0 1 2 0 0 0 2 0 0 20 1 2184.0659 Q14684;Q6PJM8 Q14684 239 258 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 3 4.7293E-07 89.311 3 0.71905 0.99777 20.595 3 Median 0.71905 0.99777 20.595 3 0 Median NaN NaN NaN 0 0 Median 48193000 29330000 18864000 48193000 29330000 18864000 0 0 0 12679 1493 13013 46209;46210;46211 69763;69764;69765;69766;69767;69768 69768 6 VGDGVYLPPEAFTFNIK RVLYYSATKNGILYRVGDGVYLPPEAFTFN DGVYLPPEAFTFNIKLSSPVKRPRKEPVDE R V G I K L 1 0 1 1 0 0 1 2 0 1 1 1 0 2 2 0 1 0 1 2 0 0 17 0 1865.9564 A0A024R7E3;P26358;Q59FP7;I6L9H2 A0A024R7E3 997 1013 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 no no 2 2.2963E-07 102.4 4 0.39703 0.50419 8.0356 3 Plateau 0.39703 0.50419 8.0356 3 0 Plateau NaN NaN NaN 0 0 Median 26152000 17956000 8196000 26152000 17956000 8196000 0 0 0 12680 176;1129 13014 46212;46213;46214;46215 69769;69770;69771;69772;69773 69773 5 VGDTSLDPNDFDFTVTGR KAFRSKVELIAYFEKVGDTSLDPNDFDFTV TSLDPNDFDFTVTGRGSPSRREQKPPKKPK K V G G R G 0 1 1 4 0 0 0 2 0 0 1 0 0 2 1 1 3 0 0 2 0 0 18 0 1954.8909 A0A140VKC4;D9ZNA4;D5L9I5;D3YJ43;D0UU70;A8K079;E9LUH4;P51608;E1B2J3;E9LUH3;D6QZ43;A0A087X1U4;C6KG44;A0A087WVW7;I6LM39;A0A075BPP5 A0A140VKC4 157 174 MECP2 Methyl-CpG-binding protein 2 yes no 2 0.0074365 63.212 1 0.5326 0.73981 NaN 1 Median 0.5326 0.73981 NaN 1 0 Median NaN NaN NaN 0 0 Median 3180000 1795100 1384900 3180000 1795100 1384900 0 0 0 12681 512 13015 46216 69774 69774 0 VGDVTPQVK TKESPARKAAPAPGKVGDVTPQVKGGALPP APAPGKVGDVTPQVKGGALPPAKRAKKPEE K V G V K G 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 1 0 0 3 0 0 9 0 941.5182 E7ETY2;J3KQ96;Q13428 E7ETY2 245 253 TCOF1 Treacle protein no no 2 0.0049705 73.665 2 0.95049 1.1741 45.237 2 Median 0.95049 1.1741 45.237 2 0 Median NaN NaN NaN 0 0 Median 34737000 18554000 16183000 34737000 18554000 16183000 0 0 0 12682 1016;1135;1469 13016 46217;46218 69775;69776 69776 2 VGDVYIPR TSPDTLRRVFEKYGRVGDVYIPRDRYTKES VFEKYGRVGDVYIPRDRYTKESRGFAFVRG R V G P R D 0 1 0 1 0 0 0 1 0 1 0 0 0 0 1 0 0 0 1 2 0 0 8 0 917.49707 B3KX15;J3QL05;J3KP15;Q6NXQ0;Q8N220;B3KVY2;B3KUF7;Q8NAK9;B3KUY1;Q53FN0;A0A024R8U5;A0A024R3A8;Q01130;Q9BRL6 B3KX15 40 47 SRSF2;SFRS2;SRP46;SRSF8 Serine/arginine-rich splicing factor 2;Serine/arginine-rich splicing factor 8 yes no 2 0.020789 56.547 1 1 0.60443 0.83353 103.4 2 Median 0.30122 0.40124 NaN 1 0 Median 1.2129 1.7316 NaN 1 0 Median 37438000 26298000 11140000 28312000 22303000 6009000 9125900 3994700 5131200 12683 100 13017 46219;46220 69777;69778 69778 2 VGDYVYFENSSSNPYLIR ______________________________ YVYFENSSSNPYLIRRIEELNKTANGNVEA R V G I R R 0 1 2 1 0 0 1 1 0 1 1 0 0 1 1 3 0 0 3 2 0 0 18 0 2122.0007 E7EQY4;E7EV10;Q9BTC8;E9PCS8;H0YIT0;Q53SC0;E9PF88;E7ESY4;Q13330 E7ESY4 8 25 MTA3;MTA1;tmp_locus_6 Metastasis-associated protein MTA3;Metastasis-associated protein MTA1 no no 2 7.7841E-23 139.48 4 0.70813 0.97328 10.572 4 Median 0.70813 0.97328 10.572 4 0 Median NaN NaN NaN 0 0 Median 37839000 21608000 16232000 37839000 21608000 16232000 0 0 0 12684 1014;1012 13018 46221;46222;46223;46224 69779;69780;69781;69782;69783;69784;69785;69786;69787 69784 9 VGDYVYFENSSSNPYLVR ______________________________ YVYFENSSSNPYLVRRIEELNKTANGNVEA R V G V R R 0 1 2 1 0 0 1 1 0 0 1 0 0 1 1 3 0 0 3 3 0 0 18 0 2107.9851 A0A024R534;O94776 A0A024R534 8 25 MTA2 Metastasis-associated protein MTA2 yes no 2 1.357E-23 153.75 4 2 0.85647 1.1558 22.606 6 Median 0.81339 1.0966 5.5103 4 0 Median 1.0611 1.7143 0.75269 2 0 Median 194990000 97981000 97011000 85211000 44723000 40488000 109780000 53259000 56522000 12685 133 13019 46225;46226;46227;46228;46229;46230 69788;69789;69790;69791;69792;69793;69794;69795;69796;69797;69798 69789 11 VGEATETALTCLVEK DSALDYNEAKGVYEKVGEATETALTCLVEK VGEATETALTCLVEKMNVFDTELKGLSKIE K V G E K M 2 0 0 0 1 0 3 1 0 0 2 1 0 0 0 0 3 0 0 2 0 0 15 0 1619.8076 A0A0S2Z3L2;P16615;H7C5W9;A8K9K1;Q93084 A0A0S2Z3L2 437 451 ATP2A2;ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Calcium-transporting ATPase;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 2 7.3222E-06 75.695 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12686 456 13020 46231 69799 69799 1 VGEIFSAAGAAFTK ______________________________ KVGEIFSAAGAAFTKLGELTMQLHPVADSS K V G T K L 4 0 0 0 0 0 1 2 0 1 0 1 0 2 0 1 1 0 0 1 0 0 14 0 1367.7085 F8W038;Q8IXM2 F8W038 8 21 C17orf49;BAP18 Chromatin complexes subunit BAP18 yes no 2 0.008919 39.266 1 1.3244 1.6824 NaN 1 Median 1.3244 1.6824 NaN 1 0 Median NaN NaN NaN 0 0 Median 5643400 2769100 2874200 5643400 2769100 2874200 0 0 0 12687 1065 13021 46232 69800 69800 1 VGELKDDDFER QQKKRLEAFLTQKAKVGELKDDDFERISEL QKAKVGELKDDDFERISELGAGNGGVVTKV K V G E R I 0 1 0 3 0 0 2 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 11 1 1321.615 P36507;A0A1B0GUL7 P36507 64 74 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 yes no 3 0.016405 35.204 1 0.28373 0.3584 NaN 1 Median 0.28373 0.3584 NaN 1 0 Median NaN NaN NaN 0 0 Median 6682200 4275600 2406600 6682200 4275600 2406600 0 0 0 12688 1324 13022 46233 69801 69801 1 VGEVTYVELLMDAEGK FDVKWQSLKDLVKEKVGEVTYVELLMDAEG GEVTYVELLMDAEGKSRGCAVVEFKMEESM K V G G K S 1 0 0 1 0 0 3 2 0 0 2 1 1 0 0 0 1 0 1 3 0 0 16 0 1751.8652 P52272;A0A087X0X3;M0R019;B4DEG4;M0R2T0;M0R0N3 P52272 95 110 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 2.0419E-15 158.25 4 1 0.32425 0.41635 121.29 3 Median 0.28485 0.35679 21.833 2 0 Median 1.8846 2.8666 NaN 1 0 Median 54452000 41719000 12733000 42674000 37901000 4773100 11778000 3818000 7960400 12689 1363 13023;13024 46234;46235;46236;46237;46238 69802;69803;69804;69805;69806 69803 593 5 VGFQNIAPK QMVTIAGVPSPQASRVGFQNIAPKPLPSQQ SPQASRVGFQNIAPKPLPSQQVSSTVVQQP R V G P K P 1 0 1 0 0 1 0 1 0 1 0 1 0 1 1 0 0 0 0 1 0 0 9 0 972.53927 Q68CP9;F8W108;F8WCU9 Q68CP9 891 899 ARID2 AT-rich interactive domain-containing protein 2 yes no 2 0.034822 46.426 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1593000 0 1593000 0 0 0 1593000 0 1593000 12690 1583 13025 46239 69807 69807 1 VGGHAAEYGAEALER LSAADKGNVKAAWGKVGGHAAEYGAEALER VGGHAAEYGAEALERMFLSFPTTKTYFPHF K V G E R M 4 1 0 0 0 0 3 3 1 0 1 0 0 0 0 0 0 0 1 1 0 0 15 0 1528.727 CON__P01966 CON__P01966 18 32 yes yes 2;3 3.9891E-09 145.14 3 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51831000 51831000 0 38325000 38325000 0 13507000 13507000 0 + 12691 948 13026 46240;46241;46242;46243;46244;46245 69808;69809;69810;69811;69812;69813 69808 6 VGGIYTVLQTK ENAVLFEVAWEVANKVGGIYTVLQTKAKVT VANKVGGIYTVLQTKAKVTGDEWGDNYFLV K V G T K A 0 0 0 0 0 1 0 2 0 1 1 1 0 0 0 0 2 0 1 2 0 0 11 0 1177.6707 P13807;Q53ER0;A8K6K7 P13807 40 50 GYS1 Glycogen [starch] synthase, muscle yes no 2 9.5759E-19 196.79 4 2 0.7952 1.0026 8.4602 4 Median 0.7952 1.0026 8.4602 4 0 Median NaN NaN NaN 0 0 Median 126160000 81305000 44858000 98377000 53519000 44858000 27786000 27786000 0 12692 1265 13027 46246;46247;46248;46249;46250;46251 69814;69815;69816;69817;69818;69819;69820;69821;69822;69823 69815 10 VGGLLAFAK LRGDHTRCKTVLTGKVGGLLAFAKRRNCCI TVLTGKVGGLLAFAKRRNCCIGCRTVLSHQ K V G A K R 2 0 0 0 0 0 0 2 0 0 2 1 0 1 0 0 0 0 0 1 0 0 9 0 874.52764 A0A024R4F4;Q308M6;M0R2B7;P28340;M0QXE6;M0QXQ2;M0R3H8 A0A024R4F4 999 1007 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 2 0.011784 63.306 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4351600 4351600 0 4351600 4351600 0 0 0 0 12693 123 13028 46252 69824 69824 1 VGGNIEVLGFNAR LRNDKDKPLPPLLARVGGNIEVLGFNARQR ARVGGNIEVLGFNARQRKAFLNAIMRYGMP R V G A R Q 1 1 2 0 0 0 1 3 0 1 1 0 0 1 0 0 0 0 0 2 0 0 13 0 1344.715 B3KY63;F5GWX5;A0A0C4DGG9;Q14839;Q8TDI0;K7EMY3;Q659F1;Q659D0;Q6ZU36;B3KRD4 B3KY63 1381 1393 CHD4;CHD5;DKFZp434K213;DKFZp434P202 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5 yes no 2 1.7094E-19 169.76 4 2 0.74367 1.0264 32.787 6 Median 0.74245 1.0074 4.6168 4 0 Median 1.1585 1.8696 1.8312 2 0 Median 316570000 167060000 149520000 207750000 118020000 89725000 108830000 49035000 59794000 12694 428 13029 46253;46254;46255;46256;46257;46258 69825;69826;69827;69828;69829;69830;69831;69832;69833;69834;69835;69836 69831 11 VGGNIEVLGFNTR LRNEKDKPLPPLLARVGGNIEVLGFNTRQR ARVGGNIEVLGFNTRQRKAFLNAVMRWGMP R V G T R Q 0 1 2 0 0 0 1 3 0 1 1 0 0 1 0 0 1 0 0 2 0 0 13 0 1374.7256 Q12873;B4DLC6;Q2TAZ1 Q12873 1403 1415 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 2 0.023248 34.773 1 2 1.0419 1.5031 14.547 3 Median 0.84871 1.1751 NaN 1 0 Median 1.0477 1.5116 0.79477 2 0 Median 34703000 16198000 18504000 10971000 5558000 5413300 23731000 10640000 13091000 12695 1458 13030 46259;46260;46261 69837;69838;69839 69837 3 VGGSDEEASGIPSR EAHRKKSLEGMKKARVGGSDEEASGIPSRT RVGGSDEEASGIPSRTASLELGEDDDEQED R V G S R T 1 1 0 1 0 0 2 3 0 1 0 0 0 0 1 3 0 0 0 1 0 0 14 0 1359.6266 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;H7C446 A0A0A6YYI3 356 369 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 4.5948E-36 171.05 3 2 0.73268 1.0042 14.744 5 Median 0.83695 1.1359 8.7482 3 0 Median 0.60292 0.86736 1.4635 2 0 Median 103260000 56240000 47015000 84410000 45179000 39231000 18845000 11061000 7784000 12696 408 13031 46262;46263;46264;46265;46266 69840;69841;69842;69843;69844;69845;69846;69847;69848;69849 69842 10 VGGSQPPFQGQR RPGEGTAPLPPPGQKVGGSQPPFQGQREPG GQKVGGSQPPFQGQREPGPHALGMSGLHGP K V G Q R E 0 1 0 0 0 3 0 3 0 0 0 0 0 1 2 1 0 0 0 1 0 0 12 0 1256.6262 Q9BTC0 Q9BTC0 1743 1754 DIDO1 Death-inducer obliterator 1 yes yes 2 0.001733 60.045 2 0.66555 0.94055 NaN 1 Median NaN NaN NaN 0 0 Median 0.66555 0.94055 NaN 1 0 Median 11092000 8179200 2912500 0 0 0 11092000 8179200 2912500 12697 1713 13032 46267;46268 69850;69851 69851 2 VGGTSDVEVNEK NERLAKLSDGVAVLKVGGTSDVEVNEKKDR VLKVGGTSDVEVNEKKDRVTDALNATRAAV K V G E K K 0 0 1 1 0 0 2 2 0 0 0 1 0 0 0 1 1 0 0 3 0 0 12 0 1232.5885 B7Z5E7;B7Z4F6;B7Z597;B3GQS7;A0A024R3X4;P10809 B7Z5E7 350 361 HSPD1 60 kDa heat shock protein, mitochondrial yes no 2 0.0016795 72.096 2 0.32045 0.40152 NaN 1 Median 0.32045 0.40152 NaN 1 0 Median NaN NaN NaN 0 0 Median 3014900 2543600 471290 3014900 2543600 471290 0 0 0 12698 110 13033 46269;46270 69852;69853 69853 2 VGGVGPADTHEPLRPEAEPGELER WAEFRPIQQALAQERVGGVGPADTHEPLRP HEPLRPEAEPGELERERARRREERRKRFGM R V G E R E 2 2 0 1 0 0 5 4 1 0 2 0 0 0 4 0 1 0 0 2 0 0 24 1 2511.2354 B9EGI2;U6FSN9;Q6WCQ1;J3KSW8;H0Y2S9;Q8N236 B9EGI2 559 582 MPRIP;Mprip-Ntrk1 fusion gene Tyrosine-protein kinase receptor;Myosin phosphatase Rho-interacting protein yes no 4 0.00040123 55.763 1 0.91571 1.242 NaN 1 Median 0.91571 1.242 NaN 1 0 Median NaN NaN NaN 0 0 Median 2672100 1145000 1527100 2672100 1145000 1527100 0 0 0 12699 928 13034 46271 69854 69854 1 VGHSELVGEIIR TACDMAGAAMYELVRVGHSELVGEIIRLEG LVRVGHSELVGEIIRLEGDMATIQVYEETS R V G I R L 0 1 0 0 0 0 2 2 1 2 1 0 0 0 0 1 0 0 0 2 0 0 12 0 1307.7197 P38606;C9JA17;C9JVW8 P38606 45 56 ATP6V1A V-type proton ATPase catalytic subunit A yes no 3 0.0028661 42.083 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16659000 16659000 0 16659000 16659000 0 0 0 0 12700 1329 13035 46272 69855 69855 1 VGIFTGAR GDAQGMNAAVRAVVRVGIFTGARVFFVHEG AVRAVVRVGIFTGARVFFVHEGYQGLVDGG R V G A R V 1 1 0 0 0 0 0 2 0 1 0 0 0 1 0 0 1 0 0 1 0 0 8 0 819.46029 A0A024R0Y5;P08237;A0A0S2Z4A1;Q96I60;A0A0S2Z4I1;F8VSL1;F8VX13;F8VNX2;F8VZQ1;F8W1J8;F8VSF7;F8VW30;F8VUB8;F8VYK8;F8VTQ3;F8VZI0;F8VVE3 A0A024R0Y5 40 47 PFKM ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type yes no 2 0.0026273 107.43 4 0.49148 0.66583 6.4538 2 Median 0.49148 0.66583 6.4538 2 0 Median NaN NaN NaN 0 0 Median 23695000 16609000 7086300 23695000 16609000 7086300 0 0 0 12701 44 13036 46273;46274;46275;46276 69856;69857;69858;69859;69860 69858 5 VGILDVDLCGPSIPR ISTELALALRHAGKKVGILDVDLCGPSIPR VGILDVDLCGPSIPRMLGAQGRAVHQCDRG K V G P R M 0 1 0 2 1 0 0 2 0 2 2 0 0 0 2 1 0 0 0 2 0 0 15 0 1609.8498 B2RDN3;H3BNF0;Q2YS46;H3BNS4;Q9Y5Y2 B2RDN3 46 60 NUBP2;NUBP1 Cytosolic Fe-S cluster assembly factor NUBP2 yes no 2 0.0035028 106.26 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2471100 2471100 0 2471100 2471100 0 0 0 0 12702 737 13037 46277 69861 69861 1 VGILLDEASGVNK KFDLLVDANDVILERVGILLDEASGVNKNQ ERVGILLDEASGVNKNQQPVLPAGLQVPKT R V G N K N 1 0 1 1 0 0 1 2 0 1 2 1 0 0 0 1 0 0 0 2 0 0 13 0 1313.7191 Q01780;B4DKG8;B4DFE4;Q59G73 Q01780 124 136 EXOSC10 Exosome component 10 yes no 2 0.00046951 66.595 2 1 0.65996 0.8587 21.898 3 Median 0.68019 0.87361 2.4346 2 0 Median 0.39374 0.59856 NaN 1 0 Median 23159000 14559000 8599900 10853000 6356800 4495700 12306000 8202000 4104100 12703 1433 13038 46278;46279;46280 69862;69863;69864 69863 3 VGINYQPPTVVPGGDLAK KRSIQFVDWCPTGFKVGINYQPPTVVPGGD NYQPPTVVPGGDLAKVQRAVCMLSNTTAIA K V G A K V 1 0 1 1 0 1 0 3 0 1 1 1 0 0 3 0 1 0 1 3 0 0 18 0 1823.9781 B3KT06;P68363;B3KPS3;A8JZY9;B4DDU2;B4DN58;C9J2C0;Q7Z3M3;Q9NY65;V9GZ17;Q53GA7;F5H5D3;Q9BQE3;B7Z1K5;Q8N532;P68366;Q71U36;B4DQK4;Q1ZYQ1;Q13748;Q9UQM3;Q6PEY2 B3KT06 318 335 TUBA1B;TUBA8;DKFZp686L04275;TUBA1C;TUBA4A;TUBA1A;TUBA2;TUBA3C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-8 chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3C/D chain;Tubulin alpha-3E chain no no 2 1.585E-10 129.17 6 2 0.44562 0.59214 120.79 6 Median 0.41347 0.5484 8.7994 4 0 Median 3.6745 5.7942 2.0976 2 0 Median 2411200000 1484700000 926550000 1906200000 1371500000 534730000 505020000 113200000 391820000 12704 777;1422;1607;1056 13039 46281;46282;46283;46284;46285;46286;46287;46288 69865;69866;69867;69868;69869;69870;69871;69872;69873;69874;69875;69876;69877;69878;69879;69880;69881;69882 69867 18 VGIQELGPR IFFRFHRYIFRSEKKVGIQELGPRFTLKLR FRSEKKVGIQELGPRFTLKLRSLQKGTFDS K V G P R F 0 1 0 0 0 1 1 2 0 1 1 0 0 0 1 0 0 0 0 1 0 0 9 0 967.54508 Q9H9Y2 Q9H9Y2 303 311 RPF1 Ribosome production factor 1 yes yes 2 0.032191 62.546 2 0.77112 1.0454 12.98 2 Median 0.77112 1.0454 12.98 2 0 Median NaN NaN NaN 0 0 Median 27330000 15071000 12258000 27330000 15071000 12258000 0 0 0 12705 1747 13040 46289;46290 69883;69884 69884 2 VGIQQGLLSQSTR GRLNARPGVGGVRSRVGIQQGLLSQSTRTA SRVGIQQGLLSQSTRTATFQQRFDARQKIG R V G T R T 0 1 0 0 0 3 0 2 0 1 2 0 0 0 0 2 1 0 0 1 0 0 13 0 1385.7627 Q96DI9;F6VRR5;B4E0L0;Q9BY77;F8WCX5;Q659C6;B4DSH9;Q6R954 Q96DI9 30 42 POLDIP3;DKFZp434G0310;PDIP46 Polymerase delta-interacting protein 3 no no 2 1.354E-05 90.913 3 2 0.51837 0.73083 51.625 4 Median 0.83097 1.142 10.528 2 0 Median 0.32121 0.47218 9.1766 2 0 Median 44119000 27741000 16378000 15995000 7646800 8348500 28124000 20094000 8029800 12706 885 13041 46291;46292;46293;46294;46295 69885;69886;69887;69888;69889;69890;69891;69892;69893 69887 9 VGITLFTVSHR VSVDVEGYIYSHCRKVGITLFTVSHRKSLW HCRKVGITLFTVSHRKSLWKHHEYYLHMDG K V G H R K 0 1 0 0 0 0 0 1 1 1 1 0 0 1 0 1 2 0 0 2 0 0 11 0 1228.6928 B4DZ22;B4DL07;P28288 B4DZ22 543 553 ABCD3 ATP-binding cassette sub-family D member 3 yes no 3 0.050483 58.511 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2127500 2127500 0 2127500 2127500 0 0 0 0 12707 823 13042 46296 69894 69894 1 VGIYLLEAGLAK RIKLYQKPEGNHIIKVGIYLLEAGLAKLDF IIKVGIYLLEAGLAKLDFLSDANSRMKKFN K V G A K L 2 0 0 0 0 0 1 2 0 1 3 1 0 0 0 0 0 0 1 1 0 0 12 0 1245.7333 A0A0D9SFM0;Q149N8;H7C2W2;K4DI94;H0YBI0 A0A0D9SFM0 212 223 SHPRH E3 ubiquitin-protein ligase SHPRH yes no 2 0.0416 33.229 1 1.0663 1.3649 NaN 1 Median 1.0663 1.3649 NaN 1 0 Median NaN NaN NaN 0 0 Median 3989400 2022300 1967100 3989400 2022300 1967100 0 0 0 12708 436 13043 46297 69895 69895 1 VGKDELFALEQSCAQVVLQAANER PSGPSGTLKAGKATKVGKDELFALEQSCAQ EQSCAQVVLQAANERNVSTRQGMDLSANQD K V G E R N 4 1 1 1 1 3 3 1 0 0 3 1 0 1 0 1 0 0 0 3 0 0 24 1 2674.3385 B3KTA3;Q16658 B3KTA3 227 250 FSCN1 Fascin yes no 3 0.018349 17.943 1 0.47136 0.60978 NaN 1 Median 0.47136 0.60978 NaN 1 0 Median NaN NaN NaN 0 0 Median 9246300 5503500 3742800 9246300 5503500 3742800 0 0 0 12709 778 13044 46298 69896 69896 1 VGLADLHPDVFATAPR VQAWVESLRGFEQERVGLADLHPDVFATAP GLADLHPDVFATAPRLDILHQVAMWQKNFK R V G P R L 3 1 0 2 0 0 0 1 1 0 2 0 0 1 2 0 1 0 0 2 0 0 16 0 1677.8839 K7ES61;A0A024R7C5;Q9BYD3;K7EKI4;K7ELF1;K7ELQ0;X6RAY8 K7ES61 77 92 MRPL4 39S ribosomal protein L4, mitochondrial yes no 3 0.00016389 39.657 1 1 1.0128 1.3453 102.9 2 Median 0.48421 0.6499 NaN 1 0 Median 2.1184 2.785 NaN 1 0 Median 18563000 11617000 6945800 14233000 9807200 4425700 4329700 1809600 2520100 12710 174 13045 46299;46300 69897;69898 69897 2 VGLALELEA SALVDGKSINAGGHKVGLALELEA______ NAGGHKVGLALELEA_______________ K V G E A - 2 0 0 0 0 0 2 1 0 0 3 0 0 0 0 0 0 0 0 1 0 0 9 0 913.51205 A0A024QZT0;P45880;A0A024QZN9;B4DKM5 A0A024QZT0 286 294 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 1 0.0077558 108.98 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13642000 0 0 13642000 0 0 0 0 0 12711 20 13046 46301 69899 69899 1 VGLFALSDIK PNCETQKWSVNGDTRVGLFALSDIKAGTEL NGDTRVGLFALSDIKAGTELTFNYNLECLG R V G I K A 1 0 0 1 0 0 0 1 0 1 2 1 0 1 0 1 0 0 0 1 0 0 10 0 1061.6121 B2RWP5;Q96L73;Q658U6;Q9H6B5;A0A1D8GZ55;A0A1D8GZ56;Q9H6H8;Q96DQ7 B2RWP5 1771 1780 NSD1;DKFZp666C163 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 2 0.0014872 85.862 3 0.94038 1.2076 28.131 3 Median 0.94038 1.2076 28.131 3 0 Median NaN NaN NaN 0 0 Median 8174500 4405200 3769300 8174500 4405200 3769300 0 0 0 12712 749 13047 46302;46303;46304 69900;69901;69902;69903;69904 69903 5 VGLGFELEA SALIDGKNFSAGGHKVGLGFELEA______ SAGGHKVGLGFELEA_______________ K V G E A - 1 0 0 0 0 0 2 2 0 0 2 0 0 1 0 0 0 0 0 1 0 0 9 0 933.48075 Q9Y277 Q9Y277 275 283 VDAC3 Voltage-dependent anion-selective channel protein 3 yes yes 1 0.0083796 105.2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10782000 0 0 10782000 0 0 0 0 0 12713 1803 13048 46305;46306 69905;69906 69906 2 VGLGLGYLELPQINYK HVPEDFWPPQPKLYKVGLGLGYLELPQINY GLGLGYLELPQINYKLSVEHKQRPKVELMP K V G Y K L 0 0 1 0 0 1 1 3 0 1 4 1 0 0 1 0 0 0 2 1 0 0 16 0 1775.9822 B4DIX0;Q13045 B4DIX0 700 715 FLII Protein flightless-1 homolog yes no 2 1.1728E-18 163.46 3 0.6094 0.812 NaN 1 Median 0.6094 0.812 NaN 1 0 Median NaN NaN NaN 0 0 Median 10483000 9516800 965710 10483000 9516800 965710 0 0 0 12714 812 13049 46307;46308;46309 69907;69908;69909;69910;69911;69912;69913 69908 7 VGLIAAR GKPSTIRRDAPAGRKVGLIAARRTGRLRGT RDAPAGRKVGLIAARRTGRLRGTKTVQEKE K V G A R R 2 1 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 1 0 0 7 0 698.44391 P62917;B4DVG7;E9PKU4;E9PP36 P62917 235 241 RPL8 60S ribosomal protein L8 yes no 2 0.0040795 137.2 3 2 0.7421 1.0189 19.89 5 Median 0.76642 1.042 2.2679 3 0 Median 0.44297 0.72568 0.28598 2 0 Median 1490000000 860870000 629110000 1260700000 701390000 559330000 229250000 159470000 69774000 12715 1417 13050 46310;46311;46312;46313;46314 69914;69915;69916;69917;69918;69919 69914 6 VGLNAQAACAPR ERELEALRVAHEEERVGLNAQAACAPRCPA EERVGLNAQAACAPRCPAPPRGPPAPAPEV R V G P R C 4 1 1 0 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 12 0 1226.619 D3DVC4;P48681;Q05BW3;A5PKT9 D3DVC4 149 160 NES Nestin yes no 2 0.014454 85.676 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1688400 1688400 0 1688400 1688400 0 0 0 0 12716 986 13051 46315 69920 69920 1 VGLQVVAVK VDGEALSTLVLNRLKVGLQVVAVKAPGFGD VLNRLKVGLQVVAVKAPGFGDNRKNQLKDM K V G V K A 1 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 4 0 0 9 0 911.5804 B7Z5E7;B7Z4F6;B7Z597;B3GQS7;A0A024R3X4;P10809;B7Z532 B7Z5E7 237 245 HSPD1 60 kDa heat shock protein, mitochondrial yes no 2 1.2496E-08 140.98 3 1 0.89231 1.1914 154.17 2 Median 0.31542 0.40051 NaN 1 0 Median 2.5243 3.5441 NaN 1 0 Median 16939000 11671000 5267200 12829000 10260000 2569000 4109600 1411400 2698300 12717 110 13052 46316;46317;46318;46319 69921;69922;69923;69924 69923 4 VGLTNYAAAYCTGLLLAR VCAAYAHELPKYGVKVGLTNYAAAYCTGLL TNYAAAYCTGLLLARRLLNRFGMDKIYEGQ K V G A R R 4 1 1 0 1 0 0 2 0 0 4 0 0 0 0 0 2 0 2 1 0 0 18 0 1926.0033 A2RUM7;P46777;B3KTM6;Q59GX9;Q5T7N0 A2RUM7 90 107 RPL5 60S ribosomal protein L5 yes no 2 4.36E-64 183.28 4 1 0.70999 0.97001 4.1563 4 Median 0.70999 0.97001 4.1563 4 0 Median NaN NaN NaN 0 0 Median 1712700000 935840000 776830000 1664700000 935840000 728860000 47971000 0 47971000 12718 540 13053 46320;46321;46322;46323;46324 69925;69926;69927;69928;69929;69930;69931 69930 7 VGMGSGSICITQEVLACGRPQATAVYK AQAKNLIDAGVDALRVGMGSGSICITQEVL EVLACGRPQATAVYKVSEYARRFGVPVIAD R V G Y K V 3 1 0 0 2 2 1 4 0 2 1 1 1 0 1 2 2 0 1 3 0 0 27 1 2852.3983 P12268 P12268 323 349 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes yes 3 1.8534E-07 81.884 3 0.30273 0.4019 4.29 2 Median 0.30273 0.4019 4.29 2 0 Median NaN NaN NaN 0 0 Median 8417500 7349900 1067600 8417500 7349900 1067600 0 0 0 12719 1261 13054;13055 46325;46326;46327 69932;69933;69934;69935 69932 522 4 VGNLGLATSFFNER SDIEEYVHRIGRTGRVGNLGLATSFFNERN RVGNLGLATSFFNERNINITKDLLDLLVEA R V G E R N 1 1 2 0 0 0 1 2 0 0 2 0 0 2 0 1 1 0 0 1 0 0 14 0 1523.7732 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1;A0A0J9YVQ7;A0A087WVZ1 A0A0D9SFB3 535 548 DDX3X ATP-dependent RNA helicase DDX3X yes no 2 2.3214E-20 167.11 4 2 0.51058 0.69298 97.744 6 Median 0.5443 0.74189 13.347 4 0 Linear 2.5739 4.1251 7.4737 2 0 Median 252680000 130370000 122310000 159500000 105130000 54367000 93182000 25235000 67947000 12720 432 13056 46328;46329;46330;46331;46332;46333 69936;69937;69938;69939;69940;69941;69942;69943;69944;69945;69946 69937 11 VGPATPSAQVGK MGPLGKGAGPVPPGKVGPATPSAQVGKWEE PGKVGPATPSAQVGKWEEDSESSSEESSDS K V G G K W 2 0 0 0 0 1 0 2 0 0 0 1 0 0 2 1 1 0 0 2 0 0 12 0 1110.6033 E7ETY2;B4DRA2;J3KQ96;Q13428;Q59FZ2 E7ETY2 529 540 TCOF1 Treacle protein no no 2 0.00073793 68.847 2 0.7316 1.1019 16.057 2 Median NaN NaN NaN 0 0 Median 0.7316 1.1019 16.057 2 0 Median 24901000 14362000 10539000 0 0 0 24901000 14362000 10539000 12721 1016;1135;1469 13057 46334;46335 69947;69948;69949 69947 3 VGPDVVTDPAFLVTR HLQAAVAFVEQGHVRVGPDVVTDPAFLVTR VGPDVVTDPAFLVTRSMEDFVTWVDSSKIK R V G T R S 1 1 0 2 0 0 0 1 0 0 1 0 0 1 2 0 2 0 0 4 0 0 15 0 1584.8512 Q9NV31 Q9NV31 138 152 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 2 1.8549E-06 124.38 5 2 0.91133 1.2381 8.039 6 Median 0.94698 1.2982 4.591 4 0 Median 0.71105 1.1234 6.095 2 0 Median 268490000 138850000 129640000 200670000 100330000 100340000 67826000 38526000 29300000 12722 1762 13058 46336;46337;46338;46339;46340;46341;46342 69950;69951;69952;69953;69954;69955;69956;69957;69958;69959 69953 10 VGPEELPVVGQLLR PRVLRLMLQSLRVNRVGPEELPVVGQLLRL RVGPEELPVVGQLLRLLLQHAPLRTHMLTN R V G L R L 0 1 0 0 0 1 2 2 0 0 3 0 0 0 2 0 0 0 0 3 0 0 14 0 1504.8613 A0A024R169;Q9NXF1;B4DQR0 A0A024R169 852 865 TEX10 Testis-expressed sequence 10 protein yes no 2 0.0070549 73.9 1 0.47617 0.62887 NaN 1 Median 0.47617 0.62887 NaN 1 0 Median NaN NaN NaN 0 0 Median 1119200 780420 338780 1119200 780420 338780 0 0 0 12723 53 13059 46343 69960 69960 1 VGPGFDAALQVSAAIGTNLRR SSSSSSASSGPALLRVGPGFDAALQVSAAI AALQVSAAIGTNLRRFRAVFGESGGGGGSG R V G R R F 4 2 1 1 0 1 0 3 0 1 2 0 0 1 1 1 1 0 0 2 0 0 21 1 2112.144 Q03164;E9PR05;Q9UPD0;Q9Y6P1;H7C5W4;H0YEU4;H7C5V8 Q03164 108 128 KMT2A;MLL Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 3 0.00043749 35.421 1 1 0.89704 1.1485 NaN 1 Median 0.89704 1.1485 NaN 1 0 Median NaN NaN NaN 0 0 Median 8135000 5125300 3009700 6016200 3006500 3009700 2118800 2118800 0 12724 1438 13060 46344;46345 69961;69962 69961 2 VGPQYQAVVPDFDPAK SGSSSDEEHGGGGMRVGPQYQAVVPDFDPA GPQYQAVVPDFDPAKLARRSQERDNLGMLV R V G A K L 2 0 0 2 0 2 0 1 0 0 0 1 0 1 3 0 0 0 1 3 0 0 16 0 1729.8675 Q9UKL0 Q9UKL0 107 122 RCOR1 REST corepressor 1 yes yes 2 1.1664E-10 126.76 4 0.61054 0.7734 NaN 1 Median 0.61054 0.7734 NaN 1 0 Median NaN NaN NaN 0 0 Median 11931000 9783100 2148000 11931000 9783100 2148000 0 0 0 12725 1788 13061 46346;46347;46348;46349 69963;69964;69965;69966;69967 69966 5 VGPSSGDAPEPSSR LEQPRSCLFEQGTRRVGPSSGDAPEPSSRR RVGPSSGDAPEPSSRRTQSSLTVSEVLTRR R V G S R R 1 1 0 1 0 0 1 2 0 0 0 0 0 0 3 4 0 0 0 1 0 0 14 0 1341.6161 A0A024RAC0;Q86V48 A0A024RAC0 978 991 LUZP1 Leucine zipper protein 1 yes no 2 4.0068E-05 96.64 3 1.162 1.5823 10.989 2 Median 1.162 1.5823 10.989 2 0 Median NaN NaN NaN 0 0 Median 8673400 3782800 4890600 8673400 3782800 4890600 0 0 0 12726 238 13062 46350;46351;46352 69968;69969;69970;69971 69969 4 VGPSVPR KRKGSDDAPYSPTARVGPSVPRQDRPVREG APYSPTARVGPSVPRQDRPVREGTRVASIE R V G P R Q 0 1 0 0 0 0 0 1 0 0 0 0 0 0 2 1 0 0 0 2 0 0 7 0 710.40752 O75151;Q8N359;B4DH04;E7ET14;A0A087WW48;Q6P2C5 O75151 910 916 PHF2 Lysine-specific demethylase PHF2 yes no 2 0.032699 60.788 1 0.85962 1.1442 NaN 1 Median 0.85962 1.1442 NaN 1 0 Median NaN NaN NaN 0 0 Median 2805200 1441200 1364000 2805200 1441200 1364000 0 0 0 12727 1196 13063 46353 69972 69972 1 VGQALELPLR EPHSMEFAPCQVEARVGQALELPLRISGLM QVEARVGQALELPLRISGLMPGGASEVVTL R V G L R I 1 1 0 0 0 1 1 1 0 0 3 0 0 0 1 0 0 0 0 1 0 0 10 0 1094.6448 Q8TEM1 Q8TEM1 549 558 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.00010467 94.85 2 2 1.6893 2.3198 130.68 4 Median 0.5665 0.75835 9.9315 2 0 Median 5.1063 7.2496 12.949 2 0 Median 41934000 19203000 22731000 24938000 16559000 8379300 16996000 2644200 14352000 12728 1661 13064 46354;46355;46356;46357 69973;69974;69975;69976;69977;69978 69978 6 VGQAVDVVGQAGKPK VTFDEELRPLPVSVRVGQAVDVVGQAGKPK VGQAVDVVGQAGKPKTITGFQTHTTPVLLA R V G P K T 2 0 0 1 0 2 0 3 0 0 0 2 0 0 1 0 0 0 0 4 0 0 15 1 1451.8096 Q59EG8;Q13200;B4DM22;Q13041 Q59EG8 851 865 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 2;3 0.00023244 121.68 5 0.35739 0.44434 15.119 2 Median 0.35739 0.44434 15.119 2 0 Median NaN NaN NaN 0 0 Median 26698000 21277000 5421100 26698000 21277000 5421100 0 0 0 12729 1465 13065 46358;46359;46360;46361;46362 69979;69980;69981;69982;69983 69983 5 VGQDPVLR LVLERSLNRVHLLGRVGQDPVLRQVEGKNP RVHLLGRVGQDPVLRQVEGKNPVTIFSLAT R V G L R Q 0 1 0 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 2 0 0 8 0 882.49232 Q567R6;A4D1U3;Q04837;C9K0U8;A0A0G2JLD8;E7EUY5;B7Z268 Q567R6 39 46 SSBP1 Single-stranded DNA-binding protein;Single-stranded DNA-binding protein, mitochondrial yes no 2 0.0036383 101.6 2 2 0.8583 1.2362 61.07 3 Median 0.34931 0.46908 NaN 1 0 Median 0.92586 1.3387 11.274 2 0 Median 47361000 30504000 16857000 22325000 17844000 4480100 25036000 12660000 12377000 12730 550 13066 46363;46364;46365;46366 69984;69985;69986;69987 69985 4 VGQEIEVRPGIVSK KGGVAGGSILKGVLKVGQEIEVRPGIVSKD KVGQEIEVRPGIVSKDSEGKLMCKPIFSKI K V G S K D 0 1 0 0 0 1 2 2 0 2 0 1 0 0 1 1 0 0 0 3 0 0 14 1 1509.8515 P41091 P41091 290 303 EIF2S3 Eukaryotic translation initiation factor 2 subunit 3 yes yes 3 0.022019 26.435 1 0.62432 0.8146 NaN 1 Median 0.62432 0.8146 NaN 1 0 Median NaN NaN NaN 0 0 Median 11543000 6479000 5063900 11543000 6479000 5063900 0 0 0 12731 1333 13067 46367 69988 69988 1 VGQFGQHYQSSASSSSSSSFPSPQR RPSTLPSSAAGYQLRVGQFGQHYQSSASSS SASSSSSSSFPSPQRFSQSGQSYDGSYNVN R V G Q R F 1 1 0 0 0 4 0 2 1 0 0 0 0 2 2 10 0 0 1 1 0 0 25 0 2629.1793 W5ZR30;Q9UGU0 W5ZR30 228 252 TCF20 Transcription factor 20 yes no 3 1.9461E-11 100.92 3 1.223 1.6648 31.468 3 Median 1.223 1.6648 31.468 3 0 Median NaN NaN NaN 0 0 Median 11249000 5345800 5903600 11249000 5345800 5903600 0 0 0 12732 1783 13068 46368;46369;46370 69989;69990;69991;69992;69993 69989 5 VGQQAIVLCISPSKPNPVFK LLRKLRATLDEYTTRVGQQAIVLCISPSKP IVLCISPSKPNPVFKVFGAAPLENVVRKYK R V G F K V 1 0 1 0 1 2 0 1 0 2 1 2 0 1 3 2 0 0 0 3 0 0 20 1 2181.198 C9JP85;A0A024R770;A0A024R774;Q16656 C9JP85 126 145 NRF1 Nuclear respiratory factor 1 yes no 3 0.0004 69.289 2 0.35148 0.42916 5.1647 2 Median 0.35148 0.42916 5.1647 2 0 Median NaN NaN NaN 0 0 Median 8542300 5833900 2708400 8542300 5833900 2708400 0 0 0 12733 170 13069 46371;46372 69994;69995;69996 69994 3 VGQYLNCIVEK AQEYIRQKNKGAKLKVGQYLNCIVEKVKGN AKLKVGQYLNCIVEKVKGNGGVVSLSVGHS K V G E K V 0 0 1 0 1 1 1 1 0 1 1 1 0 0 0 0 0 0 1 2 0 0 11 0 1321.67 Q14690;B4DH82;B4DES7 Q14690 235 245 PDCD11 Protein RRP5 homolog yes no 2 1.3143E-11 151.83 3 1.069 1.3345 4.5124 3 Median 1.069 1.3345 4.5124 3 0 Median NaN NaN NaN 0 0 Median 48744000 23931000 24813000 48744000 23931000 24813000 0 0 0 12734 1494 13070 46373;46374;46375 69997;69998;69999;70000;70001;70002;70003 70002 7 VGSHITGGDIYGIVSENSLIK SRDIKWDFTPCKNLRVGSHITGGDIYGIVS GGDIYGIVSENSLIKHKIMLPPRNRGTVTY R V G I K H 0 0 1 1 0 0 1 4 1 4 1 1 0 0 0 3 1 0 1 2 0 0 21 0 2158.127 P38606;C9JA17;C9JVW8 P38606 143 163 ATP6V1A V-type proton ATPase catalytic subunit A yes no 3 2.1437E-05 78.708 4 2 0.24717 0.31832 14.5 4 Median 0.24717 0.31832 14.5 4 0 Median NaN NaN NaN 0 0 Median 44601000 28905000 15696000 37093000 28905000 8187200 7508700 0 7508700 12735 1329 13071 46376;46377;46378;46379;46380;46381 70004;70005;70006;70007;70008;70009;70010;70011 70009 8 VGSLDNVGHLPAGGAVK IESQKLNFKEKAQAKVGSLDNVGHLPAGGA SLDNVGHLPAGGAVKTEGGGSEAPLCPGPP K V G V K T 2 0 1 1 0 0 0 4 1 0 2 1 0 0 1 1 0 0 0 3 0 0 17 0 1589.8526 E7EVA0;P27816;A0A024R2V0;H0Y2V1;F8W9U4;Q86Y04;B4DSQ1;H7C4C5;Q8NDS5 E7EVA0 2216 2232 MAP4;DKFZp547H1810 Microtubule-associated protein;Microtubule-associated protein 4 yes no 3 0.00021753 43.454 1 1.0238 1.3007 NaN 1 Median 1.0238 1.3007 NaN 1 0 Median NaN NaN NaN 0 0 Median 12625000 5782000 6843000 12625000 5782000 6843000 0 0 0 12736 1017 13072 46382 70012 70012 1 VGSQDVSLESSQAVGK KTPKQLLCRPSTGNRVGSQDVSLESSQAVG GSQDVSLESSQAVGKMQSTQTTNTSNSTNK R V G G K M 1 0 0 1 0 2 1 2 0 0 1 1 0 0 0 4 0 0 0 3 0 0 16 0 1589.7897 B4DRJ7;Q5EBM7;Q53F79;A0A024R6Q7;H3BQM0;G4U4J3;Q8NDF8 B4DRJ7 181 196 PAPD5 Non-canonical poly(A) RNA polymerase PAPD5 yes no 2 3.2324E-10 134.08 2 1 0.6888 0.87505 0.96352 2 Median 0.6888 0.87505 0.96352 2 0 Median NaN NaN NaN 0 0 Median 7597800 3733000 3864800 6405700 3733000 2672700 1192100 0 1192100 12737 162 13073 46383;46384;46385 70013;70014;70015;70016 70014 4 VGSTSQPTLETFQDLLHR SKALFSKAEEQLLSKVGSTSQPTLETFQDL TSQPTLETFQDLLHRHPDAFYLARTAKALQ K V G H R H 0 1 0 1 0 2 1 1 1 0 3 0 0 1 1 2 3 0 0 1 0 0 18 0 2028.0276 F8W126;Q96EZ8;A0A024R134 F8W126 207 224 MCRS1 Microspherule protein 1 yes no 3 9.654E-05 48.883 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4598200 4598200 0 4598200 4598200 0 0 0 0 12738 1067 13074 46386 70017;70018 70017 2 VGSVEEFQGQER LDRELRGLDDIKDLKVGSVEEFQGQERSVI DLKVGSVEEFQGQERSVILISTVRSSQSFV K V G E R S 0 1 0 0 0 2 3 2 0 0 0 0 0 1 0 1 0 0 0 2 0 0 12 0 1363.6368 B7Z700;Q5JR04;Q9HCE1;B3KQ43 B7Z700 800 811 MOV10 Putative helicase MOV-10 yes no 2 0.00025714 120.09 4 2 1.1398 1.4627 17.62 3 Median 0.89681 1.234 NaN 1 0 Median 1.238 1.6023 12.89 2 0 Median 15895000 8614300 7280700 7064900 5018800 2046100 8830100 3595500 5234600 12739 916 13075 46387;46388;46389;46390;46391;46392 70019;70020;70021;70022;70023;70024;70025 70022 7 VGTLDVLVGLSDELAK NNLAVTSKFNIPDLKVGTLDVLVGLSDELA GTLDVLVGLSDELAKLDAFVEGVVKKVAQY K V G A K L 1 0 0 2 0 0 1 2 0 0 4 1 0 0 0 1 1 0 0 3 0 0 16 0 1627.9033 A0A024R9I0;P21283 A0A024R9I0 45 60 ATP6V1C1 V-type proton ATPase subunit C 1 yes no 2 2.1635E-06 134.75 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 560560 560560 0 560560 560560 0 0 0 0 12740 222 13076 46393;46394 70026;70027 70026 2 VGTSFSIPVVSDVR IKNPVSDHFPVGCMKVGTSFSIPVVSDVRE KVGTSFSIPVVSDVRELVPSSDPIVFVVGA K V G V R E 0 1 0 1 0 0 0 1 0 1 0 0 0 1 1 3 1 0 0 4 0 0 14 0 1461.7827 A8K6D2;Q92979;B4DQC7;V9GYP5;A0A087WWQ2 A8K6D2 174 187 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 2 3.2203E-06 150.09 3 0.92336 1.3099 4.0867 3 Plateau 0.92336 1.3099 4.0867 3 0 Plateau NaN NaN NaN 0 0 Median 182270000 93839000 88431000 182270000 93839000 88431000 0 0 0 12741 623 13077 46395;46396;46397 70028;70029;70030;70031;70032;70033 70031 6 VGVIGFPNVGK KLLGGFQETCSKAIRVGVIGFPNVGKSSII KAIRVGVIGFPNVGKSSIINSLKQEQMCNV R V G G K S 0 0 1 0 0 0 0 3 0 1 0 1 0 1 1 0 0 0 0 3 0 0 11 0 1085.6233 A0A024R2Z6;Q9BVP2 A0A024R2Z6 245 255 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.00034565 92.439 5 2 0.61808 0.85675 4.3058 5 Median 0.64844 0.81249 4.2356 3 0 Median 0.54232 0.86613 0.048792 2 0 Median 220170000 141860000 78307000 100830000 64177000 36650000 119340000 77686000 41657000 12742 95 13078 46398;46399;46400;46401;46402;46403;46404 70034;70035;70036;70037;70038;70039;70040;70041;70042;70043;70044 70038 11 VGVKEELLAVGK TPTHTKQQLKASLGKVGVKEELLAVGKFTR LGKVGVKEELLAVGKFTRTSGETTHTHREP K V G G K F 1 0 0 0 0 0 2 2 0 0 2 2 0 0 0 0 0 0 0 3 0 0 12 1 1240.7391 P46013 P46013 1032 1043 MKI67 Antigen KI-67 yes no 3 0.0015668 82.543 4 0.90246 1.1093 5.0426 4 Median 0.90246 1.1093 5.0426 4 0 Median NaN NaN NaN 0 0 Median 83720000 45574000 38146000 83720000 45574000 38146000 0 0 0 12743 1342 13079 46405;46406;46407;46408 70045;70046;70047;70048;70049;70050;70051;70052 70052 8 VGVKEEVLPVGK TPTSSKQRLKISLGKVGVKEEVLPVGKLTQ LGKVGVKEEVLPVGKLTQTSGKTTQTHRET K V G G K L 0 0 0 0 0 0 2 2 0 0 1 2 0 0 1 0 0 0 0 4 0 0 12 1 1252.7391 P46013 P46013 2006 2017 MKI67 Antigen KI-67 yes yes 3 0.0074089 69.352 2 0.95187 1.1724 10.196 2 Median 0.95187 1.1724 10.196 2 0 Median NaN NaN NaN 0 0 Median 44756000 23329000 21428000 44756000 23329000 21428000 0 0 0 12744 1342 13080 46409;46410 70053;70054 70053 2 VGVLAASMEAK ETPHSPGVEDAPIAKVGVLAASMEAKASSQ PIAKVGVLAASMEAKASSQQEKEDKPAETK K V G A K A 3 0 0 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 0 2 0 0 11 0 1074.5743 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VS07;B3KTW2 F8VQE1 340 350 LIMA1 LIM domain and actin-binding protein 1 yes no 2 0.0032769 70.399 2 0.61334 0.78045 3.3239 2 Median 0.61334 0.78045 3.3239 2 0 Median NaN NaN NaN 0 0 Median 23741000 13698000 10042000 23741000 13698000 10042000 0 0 0 12745 834 13081 46411;46412 70055;70056 70056 2 VGVNGFGR ______________________________ ______________________________ K V G G R I 0 1 1 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 2 0 0 8 0 804.42424 V9HVZ4;P04406;Q2TSD0;B4DRV9 V9HVZ4 6 13 HEL-S-162eP;GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 2 0.040815 45.882 1 3.3452 4.4509 NaN 1 Median NaN NaN NaN 0 0 Median 3.3452 4.4509 NaN 1 0 Median 4844200 1143400 3700700 0 0 0 4844200 1143400 3700700 12746 1231 13082 46413 70057 70057 1 VGVPAALDMMLTGRSIRADRAK ______________________________ DMMLTGRSIRADRAKKMGLVDQLVEPLGPG M V G A K K 4 3 0 2 0 0 0 2 0 1 2 1 2 0 1 1 1 0 0 2 0 0 22 3 2327.2566 B4DDZ5 B4DDZ5 2 23 yes yes 3 0.010305 51.524 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5304100 5304100 0 5304100 5304100 0 0 0 0 12747 797 13083 46414 70058 70058 288;289 1 VGVPTVDLDAQGR KYSNMEQSLFTRFVRVGVPTVDLDAQGRAR VRVGVPTVDLDAQGRARASLCNLYNWRYKN R V G G R A 1 1 0 2 0 1 0 2 0 0 1 0 0 0 1 0 1 0 0 3 0 0 13 0 1325.6939 B0AZM4;A8K6F0;A0A024R9L1;O60306 B0AZM4 1126 1138 AQR Intron-binding protein aquarius yes no 2 0.033416 40.589 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2540700 0 2540700 0 0 0 2540700 0 2540700 12748 226 13084 46415 70059 70059 1 VGVTEGCDPTR EVLYDEVAVPKSPFRVGVTEGCDPTRVRAF SPFRVGVTEGCDPTRVRAFGPGLEGGLVNK R V G T R V 0 1 0 1 1 0 1 2 0 0 0 0 0 0 1 0 2 0 0 2 0 0 11 0 1189.5397 Q14315 Q14315 1342 1352 FLNC Filamin-C yes yes 2 0.016166 88.37 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2117900 2117900 0 2117900 2117900 0 0 0 0 12749 1486 13085 46416 70060 70060 1 VGVVGLPNVGK LGNYCRLGEVRTHIRVGVVGLPNVGKSSLI THIRVGVVGLPNVGKSSLINSLKRSRACSV R V G G K S 0 0 1 0 0 0 0 3 0 0 1 1 0 0 1 0 0 0 0 4 0 0 11 0 1037.6233 Q05DU1;A0A024R9Y6;Q9NVN8 Q05DU1 255 265 GNL3L Guanine nucleotide-binding protein-like 3-like protein yes no 2 0.028661 40.002 1 0.37926 0.48086 NaN 1 Median 0.37926 0.48086 NaN 1 0 Median NaN NaN NaN 0 0 Median 7594600 5354900 2239600 7594600 5354900 2239600 0 0 0 12750 233 13086 46417 70061;70062 70062 2 VHAAVQPGSLDSESGIFACAFDQSESR TMHLWDWRTGYNFQRVHAAVQPGSLDSESG ESGIFACAFDQSESRLLTAEADKTIKVYRE R V H S R L 4 1 0 2 1 2 2 2 1 1 1 0 0 2 1 5 0 0 0 2 0 0 27 0 2864.3035 O43660 O43660 450 476 PLRG1 Pleiotropic regulator 1 yes yes 3 0.0018042 80.171 3 0.54065 0.7521 23.53 2 Median 0.54065 0.7521 23.53 2 0 Median NaN NaN NaN 0 0 Median 6978000 4052000 2925900 6978000 4052000 2925900 0 0 0 12751 1186 13087 46418;46419;46420 70063;70064;70065;70066;70067 70064 5 VHELNEEIGK TQEEISAEVAAKAERVHELNEEIGKLLAKV AKAERVHELNEEIGKLLAKVEQLGAEGNVE R V H G K L 0 0 1 0 0 0 3 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1166.5932 A0A0A6YYJ8;Q9Y383;B3KRR1;B3KSL5 A0A0A6YYJ8 192 201 LUC7L2 Putative RNA-binding protein Luc7-like 2 no no 2 0.01268 89.029 1 0.52008 0.68801 NaN 1 Median 0.52008 0.68801 NaN 1 0 Median NaN NaN NaN 0 0 Median 2864000 2032500 831520 2864000 2032500 831520 0 0 0 12752 409 13088 46421 70068 70068 1 VHELQGNAPSDPDAVSAEEALK HVKKTTPELEIVLQKVHELQGNAPSDPDAV APSDPDAVSAEEALKYLLHLVDVNELYDHS K V H L K Y 4 0 1 2 0 1 3 1 1 0 2 1 0 0 2 2 0 0 0 2 0 0 22 0 2276.0921 Q4LE38;O95163;B4E3I9;Q8N516;F5H2T0;B3KXE7;Q68DI5;B3KNB2 Q4LE38 868 889 IKBKAP variant protein;IKBKAP;DKFZp781H1425 Elongator complex protein 1 yes no 3 8.5931E-07 97.662 3 0.34978 0.45898 NaN 1 Median 0.34978 0.45898 NaN 1 0 Median NaN NaN NaN 0 0 Median 10713000 10226000 487260 10713000 10226000 487260 0 0 0 12753 1213 13089 46422;46423;46424 70069;70070;70071 70070 3 VHFEESSKLEDLLR FYRDIISIAEDEDLRVHFEESSKLEDLLRK RVHFEESSKLEDLLRKVRAKETRKRALSRL R V H L R K 0 1 0 1 0 0 3 0 1 0 3 1 0 1 0 2 0 0 0 1 0 0 14 1 1700.8733 A0A024R1N4;P12956;B1AHC9;B2RDN9;B4DE32;B4E356 A0A024R1N4 231 244 XRCC6 X-ray repair cross-complementing protein 6 yes no 3 6.113E-06 115.12 2 1 0.62167 0.86326 22.722 3 Plateau 0.5306 0.69873 4.7687 2 0 Median 0.65614 1.0312 NaN 1 0 Median 27857000 15671000 12186000 14847000 8105000 6741800 13010000 7565800 5444300 12754 62 13090 46425;46426;46427 70072;70073;70074;70075;70076;70077 70073 6 VHFHLPYR DHLCKGCPLNGSCSKVHFHLPYRWQMLIGK LNGSCSKVHFHLPYRWQMLIGKTWTDFEHM K V H Y R W 0 1 0 0 0 0 0 0 2 0 1 0 0 1 1 0 0 0 1 1 0 0 8 0 1067.5665 Q7Z2W4;A8K9U6;C9J6P4;Q05DV5;H7C5K1;G5E9U9;A4D1T0;Q9H0J9 Q7Z2W4 530 537 ZC3HAV1;PARP12;ZC3HDC1 Zinc finger CCCH-type antiviral protein 1;Poly [ADP-ribose] polymerase 12 yes no 3 0.0046728 60.76 1 0.57306 0.76554 NaN 1 Median 0.57306 0.76554 NaN 1 0 Median NaN NaN NaN 0 0 Median 6077400 3711700 2365600 6077400 3711700 2365600 0 0 0 12755 1613 13091 46428 70078;70079 70079 2 VHFTAER GANLSVLLVEHALSKVHFTAERSSYYKSLL LVEHALSKVHFTAERSSYYKSLLSAEEAAK K V H E R S 1 1 0 0 0 0 1 0 1 0 0 0 0 1 0 0 1 0 0 1 0 0 7 0 858.4348 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B4E299;B3KU67 A0A140VK49 630 636 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.019142 69.432 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3526200 0 3526200 0 0 0 3526200 0 3526200 12756 508 13092 46429 70080 70080 1 VHGPGIQSGTTNKPNK FQVPVTEGCDPSRVRVHGPGIQSGTTNKPN HGPGIQSGTTNKPNKFTVETRGAGTGGLGL R V H N K F 0 0 2 0 0 1 0 3 1 1 0 2 0 0 2 1 2 0 0 1 0 0 16 1 1633.8536 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1360 1375 FLNA;FLJ00119 Filamin-A yes no 2;3;4 2.5687E-36 182.37 9 2 0.85264 1.0443 5.5555 9 Median 0.85264 1.0443 5.5555 9 0 Median NaN NaN NaN 0 0 Median 113460000 59843000 53617000 109570000 59843000 49730000 3887200 0 3887200 12757 1287 13093 46430;46431;46432;46433;46434;46435;46436;46437;46438;46439;46440 70081;70082;70083;70084;70085;70086;70087;70088;70089;70090;70091;70092;70093;70094;70095;70096;70097;70098 70091 18 VHIDIGADGR ENDIANFFSPLNPIRVHIDIGADGRATGEA LNPIRVHIDIGADGRATGEADVEFVTHEDA R V H G R A 1 1 0 2 0 0 0 2 1 2 0 0 0 0 0 0 0 0 0 1 0 0 10 0 1051.5411 Q53F48;A0A024QZK8;P31942;B4DHY1;A0A024QZP1 Q53F48 223 232 HNRPH3;HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes no 2;3 0.000811 85.676 3 2 0.25091 0.3453 23.876 2 Median 0.25091 0.3453 23.876 2 0 Median NaN NaN NaN 0 0 Median 58708000 37682000 21026000 41310000 37682000 3628000 17398000 0 17398000 12758 15 13094 46441;46442;46443;46444;46445 70099;70100;70101;70102;70103 70101 5 VHIEIGPDGR ENDIYNFFSPLNPVRVHIEIGPDGRVTGEA LNPVRVHIEIGPDGRVTGEADVEFATHEDA R V H G R V 0 1 0 1 0 0 1 2 1 2 0 0 0 0 1 0 0 0 0 1 0 0 10 0 1091.5724 A0A024R7T3;P52597;B4DKS8;B4DP51;G8JLB6;P31943;E9PCY7;H0YB39;H0YBG7;Q68DG4;H0YBD7;P55795;B4DFK9;B4DP00 G8JLB6 317 326 HNRPF;HNRNPF;HNRNPH1;DKFZp686A15170;HNRNPH2 Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 2;3 0.00029593 101.9 7 5 0.30677 0.41949 115.77 10 Median 0.3025 0.4093 6.1136 7 0 Median 2.9837 4.4529 3.7037 3 0 Median 463980000 311910000 152070000 383650000 298430000 85217000 80334000 13484000 66850000 12759 1084;184;1380 13095 46446;46447;46448;46449;46450;46451;46452;46453;46454;46455;46456;46457 70104;70105;70106;70107;70108;70109;70110;70111;70112;70113;70114;70115;70116;70117;70118;70119;70120;70121;70122 70118 19 VHIGQVIMSIR GMRGAFGKPQGTVARVHIGQVIMSIRTKLQ TVARVHIGQVIMSIRTKLQNKEHVIEALRR R V H I R T 0 1 0 0 0 1 0 1 1 3 0 0 1 0 0 1 0 0 0 2 0 0 11 0 1251.7122 F8W7C6;A0A087WV22;H7C123;H7C2C5;P27635;X1WI28;X5D2T3;Q96L21 P27635 129 139 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like no no 2;3 6.1327E-05 99.343 6 6 0.74246 1.0176 18.729 9 Median 0.81323 1.1049 7.9134 5 0 Median 0.59186 0.83657 19.918 4 0 Median 222010000 134250000 87763000 70122000 36146000 33976000 151890000 98106000 53786000 12760 1301;1071 13096;13097 46458;46459;46460;46461;46462;46463;46464;46465;46466;46467;46468;46469 70123;70124;70125;70126;70127;70128;70129;70130;70131;70132;70133;70134;70135;70136;70137;70138;70139 70133 384 17 VHILDTESFETTFGPK PMSLLHDRIRPHNLKVHILDTESFETTFGP HILDTESFETTFGPKSQRKRPNLFASDMQS K V H P K S 0 0 0 1 0 0 2 1 1 1 1 1 0 2 1 1 3 0 0 1 0 0 16 0 1819.8992 Q5T0F3;Q13823 Q5T0F3 132 147 GNL2 Nucleolar GTP-binding protein 2 yes no 3 0.00054826 82.837 1 0.82734 1.07 NaN 1 Median 0.82734 1.07 NaN 1 0 Median NaN NaN NaN 0 0 Median 8000000 3512900 4487200 8000000 3512900 4487200 0 0 0 12761 1477 13098 46470 70140 70140 1 VHILGSFQNIK IENVTRTRIVLADVKVHILGSFQNIKMART ADVKVHILGSFQNIKMARTAICNLILGNPP K V H I K M 0 0 1 0 0 1 0 1 1 2 1 1 0 1 0 1 0 0 0 1 0 0 11 0 1254.7085 B2R823;Q9NRX1 B2R823 209 219 PNO1 RNA-binding protein PNO1 yes no 2;3 1.0504E-06 119.68 6 3 1.0166 1.2557 14.941 9 Median 1.043 1.3076 12.389 6 0 Median 0.75596 1.1293 16.499 3 0 Median 88483000 46049000 42434000 61562000 30477000 31085000 26921000 15572000 11349000 12762 713 13099 46471;46472;46473;46474;46475;46476;46477;46478;46479 70141;70142;70143;70144;70145;70146;70147;70148;70149;70150;70151;70152 70146 12 VHIPNDDAQFDASHCDSDK GTHTSDEQNHLVVARVHIPNDDAQFDASHC NDDAQFDASHCDSDKGEFGGFGSVTGKIEC R V H D K G 2 0 1 5 1 1 0 0 2 1 0 1 0 1 1 2 0 0 0 1 0 0 19 0 2169.9022 Q6FHQ0;Q16576;E9PC52;A8K6A2;Q5JP01;C9J7L0 Q6FHQ0 83 101 RBBP7 Histone-binding protein RBBP7 yes no 3 6.6262E-06 98.552 3 0.79128 0.99962 8.8439 3 Median 0.79128 0.99962 8.8439 3 0 Median NaN NaN NaN 0 0 Median 29213000 16546000 12667000 29213000 16546000 12667000 0 0 0 12763 1521 13100 46480;46481;46482 70153;70154;70155;70156;70157 70153 5 VHIPNDDAQFDASHCDSDKGEFGGFGSVTGK GTHTSDEQNHLVVARVHIPNDDAQFDASHC SDKGEFGGFGSVTGKIECEIKINHEGEVNR R V H G K I 2 0 1 5 1 1 1 5 2 1 0 2 0 3 1 3 1 0 0 2 0 0 31 1 3293.432 Q6FHQ0;Q16576;A8K6A2;Q5JP01 Q6FHQ0 83 113 RBBP7 Histone-binding protein RBBP7 yes no 4 4.3286E-06 44.564 4 0.71982 0.88164 10.33 4 Median 0.71982 0.88164 10.33 4 0 Median NaN NaN NaN 0 0 Median 102390000 55242000 47151000 102390000 55242000 47151000 0 0 0 12764 1521 13101 46483;46484;46485;46486 70158;70159;70160;70161;70162;70163 70163 6 VHLDLWVK EHYKKLAEEQQKQYKVHLDLWVKSLSPQDR EQQKQYKVHLDLWVKSLSPQDRAAYKEYIS K V H V K S 0 0 0 1 0 0 0 0 1 0 2 1 0 0 0 0 0 1 0 2 0 0 8 0 1008.5757 E9PKP7;P17480;A8K962;O00164;B4DLB0;H0YDH7 E9PKP7 591 598 UBTF Nucleolar transcription factor 1 yes no 2 0.01247 78.324 2 0.7758 1.2019 15.473 2 Median NaN NaN NaN 0 0 Median 0.7758 1.2019 15.473 2 0 Median 60811000 33506000 27305000 0 0 0 60811000 33506000 27305000 12765 1039 13102 46487;46488 70164;70165;70166 70164 3 VHLEDVFQLFK ADAVHFRVLMKLFIKVHLEDVFQLFKFCSV LFIKVHLEDVFQLFKFCSVLWTYGSSLSNP K V H F K F 0 0 0 1 0 1 1 0 1 0 2 1 0 2 0 0 0 0 0 2 0 0 11 0 1373.7343 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1 B2RWN5 855 865 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 2.4384E-28 175.93 5 1 0.92528 1.1786 6.4424 3 Median 0.92528 1.1786 6.4424 3 0 Median NaN NaN NaN 0 0 Median 77781000 40294000 37486000 70101000 32614000 37486000 7680000 7680000 0 12766 748 13103 46489;46490;46491;46492;46493;46494 70167;70168;70169;70170;70171;70172;70173;70174;70175;70176 70173 10 VHLLCLLANGFYR AMKRFNKGVHEDTHKVHLLCLLANGFYRNN HKVHLLCLLANGFYRNNICSQPDLHAIGLS K V H Y R N 1 1 1 0 1 0 0 1 1 0 4 0 0 1 0 0 0 0 1 1 0 0 13 0 1574.8392 A0A024R2M8;X5DRB1;A8K146;Q01831;D9I4E1;D2CPI9;D2CPJ0 A0A024R2M8 208 220 XPC DNA repair protein complementing XP-C cells yes no 3 1.1298E-08 99.283 2 2 0.66503 0.92106 NaN 1 Median 0.66503 0.92106 NaN 1 0 Median NaN NaN NaN 0 0 Median 16807000 12342000 4465100 9067000 6052600 3014400 7739700 6289000 1450700 12767 89 13104 46495;46496;46497;46498 70177;70178;70179;70180;70181 70178 5 VHLLGR SETTTSLVLERSLNRVHLLGRVGQDPVLRQ LVLERSLNRVHLLGRVGQDPVLRQVEGKNP R V H G R V 0 1 0 0 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 1 0 0 6 0 693.42859 Q567R6;A4D1U3;Q04837;C9K0U8;A0A0G2JLD8;E7EUY5;B7Z268 Q567R6 33 38 SSBP1 Single-stranded DNA-binding protein;Single-stranded DNA-binding protein, mitochondrial yes no 2 0.023891 123.06 2 2 0.92504 1.3931 55.964 4 Linear 0.43003 0.57888 1.0951 2 0 Median 1.0006 1.5244 4.3982 2 0 Median 69376000 40347000 29029000 32978000 22399000 10580000 36397000 17948000 18450000 12768 550 13105 46499;46500;46501;46502 70182;70183;70184;70185 70182 4 VHLSTGELGIIDSAFGQSGK LFKKETNIQLFVGLKVHLSTGELGIIDSAF GELGIIDSAFGQSGKFKIHIPGGLSPESKK K V H G K F 1 0 0 1 0 1 1 4 1 2 2 1 0 1 0 3 1 0 0 1 0 0 20 0 2015.0324 P57772 P57772 508 527 EEFSEC Selenocysteine-specific elongation factor yes yes 3 0.00060295 61.181 2 0.5118 0.65643 NaN 1 Median 0.5118 0.65643 NaN 1 0 Median NaN NaN NaN 0 0 Median 6262500 4737200 1525200 6262500 4737200 1525200 0 0 0 12769 1385 13106 46503;46504 70186;70187 70187 2 VHLVGIDIFTGK VEMSTSKTGKHGHAKVHLVGIDIFTGKKYE HAKVHLVGIDIFTGKKYEDICPSTHNMDVP K V H G K K 0 0 0 1 0 0 0 2 1 2 1 1 0 1 0 0 1 0 0 2 0 0 12 0 1297.7394 I3L397;I3L504;P63241;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4;Q6IS14 I3L397 56 67 EIF5A;EIF5A2;EIF5AL1 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like yes no 2;3 1.6427E-11 154.84 8 2 0.34997 0.43707 16.035 7 Median 0.34997 0.43707 16.035 7 0 Median NaN NaN NaN 0 0 Median 267220000 191540000 75688000 252370000 191540000 60831000 14857000 0 14857000 12770 1127 13107 46505;46506;46507;46508;46509;46510;46511;46512;46513;46514 70188;70189;70190;70191;70192;70193;70194;70195;70196;70197;70198;70199;70200;70201;70202;70203 70194 16 VHPAVVIR VMATVKKGKPELRKKVHPAVVIRQRKSYRR KPELRKKVHPAVVIRQRKSYRRKDGVFLYF K V H I R Q 1 1 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 3 0 0 8 0 889.54977 Q9BTQ7;A0A024R1Q8;P62829;J3KT29;C9JD32;J3KTJ3;J3QQT9 Q9BTQ7 70 77 RPL23 60S ribosomal protein L23 yes no 2;3 0.0017645 105.27 7 6 0.76423 1.0529 17.137 13 Median 0.89195 1.206 10.05 7 0 Median 0.61129 1.0479 11.853 6 0 Plateau 3044000000 1699800000 1344100000 1695200000 873770000 821400000 1348800000 826040000 522740000 12771 63 13108 46515;46516;46517;46518;46519;46520;46521;46522;46523;46524;46525;46526;46527 70204;70205;70206;70207;70208;70209;70210;70211;70212;70213;70214;70215;70216;70217;70218;70219;70220;70221 70211 18 VHSEVASLQEK SSQVCFTQNNYIQVRVHSEVASLQEKQHTT IQVRVHSEVASLQEKQHTTTNVFHFTFMSE R V H E K Q 1 0 0 0 0 1 2 0 1 0 1 1 0 0 0 2 0 0 0 2 0 0 11 0 1225.6303 Q9Y305;Q9H2R8 Q9Y305 373 383 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 2 9.1644E-26 213.8 3 1 0.53652 0.66941 NaN 1 Median 0.53652 0.66941 NaN 1 0 Median NaN NaN NaN 0 0 Median 13758000 9905000 3852600 11400000 9905000 1495100 2357500 0 2357500 12772 1812 13109 46528;46529;46530;46531 70222;70223;70224;70225;70226;70227 70223 6 VHSFTHEAPNQR QLLAETFHHKRCVLKVHSFTHEAPNQRRRL VLKVHSFTHEAPNQRRRLLLCSAATDGSLA K V H Q R R 1 1 1 0 0 1 1 0 2 0 0 0 0 1 1 1 1 0 0 1 0 0 12 0 1421.68 A0A087X295;Q9NNW5;Q8NDH0;E9PDU5;B4E256;B3KRR8;E9PBK6;B4DLP3;Q6PKC6;Q6AZD6;Q9H9M3 A0A087X295 946 957 WDR6;DKFZp434F1720 WD repeat-containing protein 6 yes no 2;3 0.00077365 116.55 3 0.49125 0.69323 9.6188 3 Median 0.49125 0.69323 9.6188 3 0 Median NaN NaN NaN 0 0 Median 5342500 3554200 1788300 5342500 3554200 1788300 0 0 0 12773 376 13110 46532;46533;46534 70228;70229;70230;70231 70229 4 VHSPSGALEECYVTEIDQDK FAVSLNGAKGAIDAKVHSPSGALEECYVTE GALEECYVTEIDQDKYAVRFIPRENGVYLI K V H D K Y 1 0 0 2 1 1 3 1 1 1 1 1 0 0 1 2 1 0 1 2 0 0 20 0 2276.0267 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5 P21333 2368 2387 FLNA;FLJ00119 Filamin-A yes no 3 8.5227E-40 177.6 4 1 0.93502 1.2167 38.95 5 Median 0.928 1.1896 3.3171 4 0 Median 2.071 2.8487 NaN 1 0 Median 316300000 161980000 154320000 312270000 160340000 151920000 4035600 1636200 2399300 12774 1287 13111 46535;46536;46537;46538;46539 70232;70233;70234;70235;70236;70237;70238;70239;70240;70241 70238 10 VHSPSGAVEECHVSELEPDK FAIRLNGAKGKIDAKVHSPSGAVEECHVSE GAVEECHVSELEPDKYAVRFIPHENGVHTI K V H D K Y 1 0 0 1 1 0 4 1 2 0 1 1 0 0 2 3 0 0 0 3 0 0 20 0 2205.0008 O75369;A0A024R321;Q68CT4;E7EN95 O75369 2323 2342 FLNB;DKFZp686A1668 Filamin-B yes no 3 1.8723E-11 118.05 4 0.78672 1.0092 7.8473 3 Median 0.78672 1.0092 7.8473 3 0 Median NaN NaN NaN 0 0 Median 29819000 17267000 12552000 29819000 17267000 12552000 0 0 0 12775 1199 13112 46540;46541;46542;46543 70242;70243;70244;70245;70246;70247;70248;70249 70244 8 VHTLLTVEVFGVIR GKILELLRPDPNTGKVHTLLTVEVFGVIRS KVHTLLTVEVFGVIRSLMAFRLTGGTKDYI K V H I R S 0 1 0 0 0 0 1 1 1 1 2 0 0 1 0 0 2 0 0 4 0 0 14 0 1581.9243 A8K6V3;Q15393;I3L4G7 A8K6V3 50 63 SF3B3 Splicing factor 3B subunit 3 yes no 3 0.010768 39.424 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1561900 1561900 0 1561900 1561900 0 0 0 0 12776 628 13113 46544 70250 70250 1 VHVPARPYR NSPCTIIIGKAHTEKVHVPARPYRVLNNFI KAHTEKVHVPARPYRVLNNFISNQKMDFKE K V H Y R V 1 2 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 1 2 0 0 9 1 1093.6145 P46013;Q70L73 P46013 727 735 MKI67 Antigen KI-67 no no 2;3 0.00092206 81.296 5 2 0.86519 1.1976 10.237 7 Median 0.84694 1.1451 9.7826 5 0 Median 0.9462 1.312 0.2427 2 0 Median 490700000 266290000 224400000 475890000 258470000 217410000 14810000 7820600 6989700 12777 1342;1604 13114 46545;46546;46547;46548;46549;46550;46551 70251;70252;70253;70254;70255;70256;70257;70258 70255 8 VIAATNRVDILDPALLR LLNQLDGFQPNTQVKVIAATNRVDILDPAL AATNRVDILDPALLRSGRLDR_________ K V I L R S 3 2 1 2 0 0 0 0 0 2 3 0 0 0 1 0 1 0 0 2 0 0 17 1 1849.0785 E9PKD5;E9PM69;R4GNH3;A8K781;A0A140VK42;P17980 E9PKD5 289 305 PSMC3 26S protease regulatory subunit 6A yes no 3 0.0023505 65.652 3 0.44217 0.58916 5.9181 3 Median 0.44217 0.58916 5.9181 3 0 Median NaN NaN NaN 0 0 Median 32832000 20530000 12302000 32832000 20530000 12302000 0 0 0 12778 507 13115 46552;46553;46554 70259;70260;70261;70262 70259 4 VIAGLYQR RILELSGSSSEDSEKVIAGLYQRAFQHLSE SSEDSEKVIAGLYQRAFQHLSEAVQAAEEE K V I Q R A 1 1 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 1 1 0 0 8 0 918.5287 P78527 P78527 3373 3380 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.011371 70.716 2 0.63223 0.84276 41.3 2 Median 0.63223 0.84276 41.3 2 0 Median NaN NaN NaN 0 0 Median 52923000 27748000 25175000 52923000 27748000 25175000 0 0 0 12779 1427 13116 46555;46556 70263;70264 70263 2 VIAHTQMR EKDFSSMKKYCQVIRVIAHTQMRLLPLRQK KYCQVIRVIAHTQMRLLPLRQKKAHLMEIQ R V I M R L 1 1 0 0 0 1 0 0 1 1 0 0 1 0 0 0 1 0 0 1 0 0 8 0 954.50692 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;Q49AJ9;Q9BT63;H7C422;H7C3M2;B5MCW2 P39023 162 169 RPL3;rpl3 60S ribosomal protein L3 yes no 3 0.0016157 85.212 1 0.80612 1.0971 NaN 1 Median 0.80612 1.0971 NaN 1 0 Median NaN NaN NaN 0 0 Median 9294800 5030500 4264300 9294800 5030500 4264300 0 0 0 12780 1330 13117 46557 70265 70265 1 VIAPNPAQLQGQR SATNTTLPHMLMSQRVIAPNPAQLQGQRGP QRVIAPNPAQLQGQRGPPKPGLQSSSSVPC R V I Q R G 2 1 1 0 0 3 0 1 0 1 1 0 0 0 2 0 0 0 0 1 0 0 13 0 1390.7681 A0A0U1RRM1;Q8WXI9;B3KSZ4;A0A0U1RR30 A0A0U1RRM1 265 277 GATAD2B Transcriptional repressor p66-beta yes no 2 8.9037E-11 118.26 2 2 1.0793 1.5668 42.15 4 Median 0.8137 1.0935 2.8671 2 0 Median 1.4483 2.2652 4.133 2 0 Median 100560000 50166000 50395000 43378000 26018000 17360000 57183000 24148000 33035000 12781 488 13118 46558;46559;46560;46561 70266;70267;70268;70269 70267 4 VIAQLSECEK GKDDYKKQKETELNKVIAQLSECEKHKEKI TELNKVIAQLSECEKHKEKINEDMRLMRQD K V I E K H 1 0 0 0 1 1 2 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 10 0 1175.5856 Q92878 Q92878 983 992 RAD50 DNA repair protein RAD50 yes yes 2 0.0035913 78.516 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6033400 3811700 2221600 6033400 3811700 2221600 0 0 0 12782 1676 13119 46562;46563 70270;70271 70270 2 VIDDTNITR AMRQSVENDIHGLRKVIDDTNITRLQLETE IHGLRKVIDDTNITRLQLETEIEALKEELL K V I T R L 0 1 1 2 0 0 0 0 0 2 0 0 0 0 0 0 2 0 0 1 0 0 9 0 1045.5404 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965 F8VZY9 188 196 KRT18 Keratin, type I cytoskeletal 18 yes no 2 1.3277E-08 140.5 5 2 0.2328 0.32316 122.11 5 Median 0.23044 0.31916 5.3502 3 0 Median 1.7792 2.8918 1.4815 2 0 Median 880150000 635690000 244470000 745540000 587720000 157820000 134610000 47962000 86647000 12783 252 13120 46564;46565;46566;46567;46568;46569;46570 70272;70273;70274;70275;70276;70277;70278;70279;70280;70281;70282;70283 70277 12 VIDFDENTALDDAEEESFRK DTVTWDEYNIQMYDRVIDFDENTALDDAEE ENTALDDAEEESFRKLHLKDKKRFEKANQD R V I R K L 2 1 1 4 0 0 4 0 0 1 1 1 0 2 0 1 1 0 0 1 0 0 20 1 2342.055 Q14257;H0YL43 Q14257 130 149 RCN2 Reticulocalbin-2 yes no 3 3.3585E-24 149.86 4 2 1.3293 1.7391 44.785 6 Median 1.2822 1.6969 2.4486 4 0 Median 2.4477 4.0595 4.8955 2 0 Median 154350000 64428000 89926000 112680000 50671000 62008000 41676000 13757000 27919000 12784 1484 13121 46571;46572;46573;46574;46575;46576 70284;70285;70286;70287;70288;70289;70290;70291;70292;70293;70294;70295;70296;70297 70290 14 VIDPVAPR VVNMEWDKIWAFNKKVIDPVAPRYVALLKK IWAFNKKVIDPVAPRYVALLKKEVIPVNVP K V I P R Y 1 1 0 1 0 0 0 0 0 1 0 0 0 0 2 0 0 0 0 2 0 0 8 0 865.50215 P07814;V9GYZ6;Q3KQZ8;B4DKX5;H6WCP5 P07814 499 506 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.03206 79.469 2 0.48969 0.6642 1.6094 2 Median 0.48969 0.6642 1.6094 2 0 Median NaN NaN NaN 0 0 Median 22447000 14084000 8363100 22447000 14084000 8363100 0 0 0 12785 1242 13122 46577;46578 70298;70299 70298 2 VIDPVTGKPCAGTTYLESPLSSETTQLSK HVKHELAEIVFKVGKVIDPVTGKPCAGTTY YLESPLSSETTQLSKNLEELNISSA_____ K V I S K N 1 0 0 1 1 1 2 2 0 1 3 2 0 0 3 4 5 0 1 2 0 0 29 1 3078.5431 E9PE17;Q8IY71;I3L0E3;Q9Y2R5 E9PE17 91 119 MRPS17;hCG_1984214 28S ribosomal protein S17, mitochondrial yes no 3 2.2508E-07 73.934 3 0.64875 0.77766 15.339 3 Median 0.64875 0.77766 15.339 3 0 Median NaN NaN NaN 0 0 Median 13539000 8313600 5225500 13539000 8313600 5225500 0 0 0 12786 1022 13123 46579;46580;46581 70300;70301;70302;70303;70304;70305 70304 6 VIDRELYQQLQR GLRSLVPAAELLESRVIDRELYQQLQRGER ESRVIDRELYQQLQRGERSVRDVAEVDTVR R V I Q R G 0 2 0 1 0 3 1 0 0 1 2 0 0 0 0 0 0 0 1 1 0 0 12 1 1559.842 Q15149;D3DWL0 Q15149 3128 3139 PLEC;PLEC1 Plectin yes no 3 6.2728E-06 118.48 4 0.66674 0.8957 5.6747 4 Median 0.66674 0.8957 5.6747 4 0 Median NaN NaN NaN 0 0 Median 75987000 41353000 34634000 75987000 41353000 34634000 0 0 0 12787 1507 13124 46582;46583;46584;46585 70306;70307;70308;70309;70310;70311;70312 70311 7 VIDRFDEGEDGEGDFLVVGSIR EADPEADPEEATAARVIDRFDEGEDGEGDF GEDGEGDFLVVGSIRKLASASLLDTDKRYC R V I I R K 0 2 0 4 0 0 3 4 0 2 1 0 0 2 0 1 0 0 0 3 0 0 22 1 2423.1605 Q9NY61 Q9NY61 36 57 AATF Protein AATF yes yes 3 4.1202E-27 151.89 4 2 0.7035 1.0328 8.4593 5 Median 0.76766 1.0596 10.555 3 0 Median 0.64248 1.0074 3.5215 2 0 Median 184290000 115870000 68424000 88934000 58821000 30113000 95361000 57050000 38311000 12788 1767 13125 46586;46587;46588;46589;46590;46591 70313;70314;70315;70316;70317;70318;70319;70320;70321;70322 70316 10 VIDSSDVVVQVLDAR YKKGQSKRIWGELYKVIDSSDVVVQVLDAR VIDSSDVVVQVLDARDPMGTRSPHIETYLK K V I A R D 1 1 0 3 0 1 0 0 0 1 1 0 0 0 0 2 0 0 0 5 0 0 15 0 1613.8625 Q5T0F3;Q13823;B4DPI9 Q5T0F3 213 227 GNL2 Nucleolar GTP-binding protein 2 yes no 2 2.4352E-10 147.87 2 2 0.6436 0.9168 30.736 2 Median 0.84712 1.1394 NaN 1 0 Median 0.48898 0.73771 NaN 1 0 Median 62358000 47630000 14728000 37313000 28368000 8945500 25045000 19262000 5782700 12789 1477 13126 46592;46593;46594;46595 70323;70324;70325;70326;70327 70323 5 VIDVTVPLQCLVK GKFVNDKSRKSEKVKVIDVTVPLQCLVKDS VKVIDVTVPLQCLVKDSKLILTEASKAGLP K V I V K D 0 0 0 1 1 1 0 0 0 1 2 1 0 0 1 0 1 0 0 4 0 0 13 0 1482.848 B3KTC6;B4DGD5;B4DPK2;Q9NVH1 B3KTC6 41 53 DNAJC11 DnaJ homolog subfamily C member 11 yes no 2 0.01106 86.898 3 0.37376 0.47818 NaN 1 Median 0.37376 0.47818 NaN 1 0 Median NaN NaN NaN 0 0 Median 6268200 2807100 3461100 6268200 2807100 3461100 0 0 0 12790 779 13127 46596;46597;46598 70328;70329;70330 70328 2 VIEASDVVLEVLDAR GKQNSKKLYCQELKKVIEASDVVLEVLDAR VIEASDVVLEVLDARDPLGCRCPQVEEAIV K V I A R D 2 1 0 2 0 0 2 0 0 1 2 0 0 0 0 1 0 0 0 4 0 0 15 0 1626.8829 A0A024R2Z6;Q9BVP2 A0A024R2Z6 125 139 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 4.5961E-67 213.63 4 0.59693 0.81771 4.4514 3 Median 0.59693 0.81771 4.4514 3 0 Median NaN NaN NaN 0 0 Median 133170000 79245000 53922000 133170000 79245000 53922000 0 0 0 12791 95 13128 46599;46600;46601;46602 70331;70332;70333;70334;70335;70336;70337;70338 70336 8 VIEASDVVLEVLDARDPLGCR GKQNSKKLYCQELKKVIEASDVVLEVLDAR VVLEVLDARDPLGCRCPQVEEAIVQSGQKK K V I C R C 2 2 0 3 1 0 2 1 0 1 3 0 0 0 1 1 0 0 0 4 0 0 21 1 2325.1998 A0A024R2Z6;Q9BVP2 A0A024R2Z6 125 145 GNL3 Guanine nucleotide-binding protein-like 3 yes no 3 0.022265 40.844 1 0.66653 0.91927 NaN 1 Median 0.66653 0.91927 NaN 1 0 Median NaN NaN NaN 0 0 Median 5234400 3274500 1959900 5234400 3274500 1959900 0 0 0 12792 95 13129 46603 70339 70339 1 VIECDVVK CTSQELRSLFERRGRVIECDVVKDYAFVHM LFERRGRVIECDVVKDYAFVHMEKEADAKA R V I V K D 0 0 0 1 1 0 1 0 0 1 0 1 0 0 0 0 0 0 0 3 0 0 8 0 960.49502 A0A0S2Z4Z0;Q96PK6;A0A0S2Z567;A0A0A6YYI9;A0A0S2Z5V2;F8WDX3;A0A0A0MSL8;B8ZZ74 A0A0S2Z4Z0 105 112 RBM14;RBM14-RBM4 RNA-binding protein 14 yes no 2 0.047344 42.869 1 0.34664 0.43103 NaN 1 Median 0.34664 0.43103 NaN 1 0 Median NaN NaN NaN 0 0 Median 18412000 13621000 4791100 18412000 13621000 4791100 0 0 0 12793 472 13130 46604 70340 70340 1 VIEDVAFACALTSSVPTTK VQSETKGRAKAGSSKVIEDVAFACALTSSV VAFACALTSSVPTTKKKMLKKGACAVEGSK K V I T K K 3 0 0 1 1 0 1 0 0 1 1 1 0 1 1 2 3 0 0 3 0 0 19 0 2008.0187 Q59GQ7;A0A0C4DGA6;Q14527;A8K5B6;Q05DF7 Q59GQ7 434 452 HLTF Helicase-like transcription factor yes no 2 8.317E-07 67.997 2 0.7464 0.93937 2.7028 2 Median 0.7464 0.93937 2.7028 2 0 Median NaN NaN NaN 0 0 Median 13540000 7553300 5986300 13540000 7553300 5986300 0 0 0 12794 425 13131 46605;46606 70341;70342 70342 2 VIEEQLEPAVEK VIEPQYFGLAYLFRKVIEEQLEPAVEKISI FRKVIEEQLEPAVEKISIMAERLANQFAIY K V I E K I 1 0 0 0 0 1 4 0 0 1 1 1 0 0 1 0 0 0 0 2 0 0 12 0 1382.7293 E5KNY5;P42704 E5KNY5 1225 1236 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.00040822 92.538 1 0.35418 0.4478 NaN 1 Median 0.35418 0.4478 NaN 1 0 Median NaN NaN NaN 0 0 Median 9180800 6561300 2619500 9180800 6561300 2619500 0 0 0 12795 1001 13132 46607 70343 70343 1 VIEFAAK KYVMVVYKREPAVERVIEFAAKFVTSFHQS KREPAVERVIEFAAKFVTSFHQSDMEDDEE R V I A K F 2 0 0 0 0 0 1 0 0 1 0 1 0 1 0 0 0 0 0 1 0 0 7 0 776.44324 Q9BPX3;Q6NUR1;D6RA93 Q9BPX3 68 74 NCAPG Condensin complex subunit 3 yes no 2 0.030959 86.512 3 2 0.65138 0.83386 9.3579 5 Median 0.73376 0.91576 6.7239 3 0 Median 0.51559 0.77622 1.7216 2 0 Median 111940000 63050000 48890000 90215000 49063000 41152000 21725000 13987000 7738100 12796 1706 13133 46608;46609;46610;46611;46612 70344;70345;70346;70347;70348;70349;70350 70347 7 VIELFSVCTNEDPK RPPINMEELDESYQKVIELFSVCTNEDPKD KVIELFSVCTNEDPKDRPSAAHIVEALETD K V I P K D 0 0 1 1 1 0 2 0 0 1 1 1 0 1 1 1 1 0 0 2 0 0 14 0 1649.7971 V9HWH0;Q96KB5 V9HWH0 293 306 HEL164;PBK Lymphokine-activated killer T-cell-originated protein kinase yes no 2 0.00055004 90.685 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2637500 2637500 0 2637500 2637500 0 0 0 0 12797 1691 13134 46613 70351 70351 1 VIEPGCVR HLDGRQIVVKYPPGKVIEPGCVRVVRGEGM VKYPPGKVIEPGCVRVVRGEGMPQYRNPFE K V I V R V 0 1 0 0 1 0 1 1 0 1 0 0 0 0 1 0 0 0 0 2 0 0 8 0 928.48004 A0A024R6S1;O60884 A0A024R6S1 303 310 DNAJA2 DnaJ homolog subfamily A member 2 yes no 2 0.031314 50.632 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9459900 9459900 0 9459900 9459900 0 0 0 0 12798 164 13135 46614 70352 70352 1 VIEPQYFGLAYLFR AAIENIENMLTSENKVIEPQYFGLAYLFRK KVIEPQYFGLAYLFRKVIEEQLEPAVEKIS K V I F R K 1 1 0 0 0 1 1 1 0 1 2 0 0 2 1 0 0 0 2 1 0 0 14 0 1714.9083 E5KNY5;P42704 E5KNY5 1210 1223 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 1.1963E-06 130.41 1 0.37886 0.51952 NaN 1 Median 0.37886 0.51952 NaN 1 0 Median NaN NaN NaN 0 0 Median 6488800 4439700 2049100 6488800 4439700 2049100 0 0 0 12799 1001 13136 46615 70353 70353 1 VIESTQDLGNDLAGVMALQR LECNETKSWIREKTKVIESTQDLGNDLAGV QDLGNDLAGVMALQRKLTGMERDLVAIEAK K V I Q R K 2 1 1 2 0 2 1 2 0 1 3 0 1 0 0 1 1 0 0 2 0 0 20 0 2129.0787 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24 B2ZZ89 977 996 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.0013863 109.44 2 1.3559 1.9261 NaN 1 Median 1.3559 1.9261 NaN 1 0 Median NaN NaN NaN 0 0 Median 1630100 640150 989960 1630100 640150 989960 0 0 0 12800 346 13137 46616;46617 70354;70355 70354 2 VIFHPEFLSSTSPLLPVDYEEFVR IRRIGLFNSSADRVKVIFHPEFLSSTSPLL STSPLLPVDYEEFVRGCHLGVFPSYYEPWG K V I V R G 0 1 0 1 0 0 3 0 1 1 3 0 0 3 3 3 1 0 1 3 0 0 24 0 2820.4374 P13807;Q53ER0;A8K6K7;B7Z806;B7Z6I6;B7Z255 P13807 475 498 GYS1 Glycogen [starch] synthase, muscle yes no 3 3.5376E-14 101.71 3 0.72135 0.98294 1.7109 3 Median 0.72135 0.98294 1.7109 3 0 Median NaN NaN NaN 0 0 Median 115680000 67769000 47916000 115680000 67769000 47916000 0 0 0 12801 1265 13138 46618;46619;46620 70356;70357;70358;70359;70360;70361 70361 6 VIFLEDDDVAAVVDGR YFASDASAVIEHTNRVIFLEDDDVAAVVDG IFLEDDDVAAVVDGRLSIHRIKRTAGDHPG R V I G R L 2 1 0 4 0 0 1 1 0 1 1 0 0 1 0 0 0 0 0 4 0 0 16 0 1731.8679 Q06210 Q06210 291 306 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 1.1481E-24 150.68 4 1 0.97895 1.3029 19.475 4 Median 0.97895 1.3029 19.475 4 0 Median NaN NaN NaN 0 0 Median 29713000 11960000 17753000 22873000 11960000 10913000 6839800 0 6839800 12802 1445 13139 46621;46622;46623;46624;46625 70362;70363;70364;70365;70366 70365 4 VIFPAAEDKDQDLITIIGK GGGKIRKVRDSTGARVIFPAAEDKDQDLIT AAEDKDQDLITIIGKEDAVREAQKELEALI R V I G K E 2 0 0 3 0 1 1 1 0 4 1 2 0 1 1 0 1 0 0 1 0 0 19 1 2085.1358 B2R5V9;A0A024R4E5;Q00341;Q6ZS03;Q96CF6;H0Y394;B4DKR8;Q6ZN49;H7C2D1;Q2HJC8 B2R5V9 761 779 HDLBP Vigilin yes no 3 0.00045743 74.12 3 0.83725 1.0431 6.487 3 Median 0.83725 1.0431 6.487 3 0 Median NaN NaN NaN 0 0 Median 11107000 5443200 5664200 11107000 5443200 5664200 0 0 0 12803 122 13140 46626;46627;46628 70367;70368;70369;70370;70371 70369 5 VIFTSPIK CAEYAIALALREKQRVIFTSPIKALSNQKY ALREKQRVIFTSPIKALSNQKYREMYEEFQ R V I I K A 0 0 0 0 0 0 0 0 0 2 0 1 0 1 1 1 1 0 0 1 0 0 8 0 903.54295 P42285;A8K6I4;B4E3M6 P42285 185 192 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 0.022203 55.676 2 0.56431 0.82861 4.745 2 Median NaN NaN NaN 0 0 Median 0.56431 0.82861 4.745 2 0 Median 13527000 8232100 5294500 0 0 0 13527000 8232100 5294500 12804 1336 13141 46629;46630 70372;70373 70372 2 VIGLQIFNIDTDR YQRDSDENLTDAEGKVIGLQIFNIDTDRAC GKVIGLQIFNIDTDRACAVETSVDLSEISS K V I D R A 0 1 1 2 0 1 0 1 0 3 1 0 0 1 0 0 1 0 0 1 0 0 13 0 1502.8093 E9PEI0;Q69YH5;A8K8Z0;B7Z5Q5 E9PEI0 206 218 CDCA2 Cell division cycle-associated protein 2 yes no 2 1.7965E-12 160.36 4 2 0.6491 0.87807 12.226 6 Median 0.80364 0.95843 10.06 4 0 Linear 0.51971 0.79901 2.8867 2 0 Median 94288000 56278000 38010000 53509000 31699000 21810000 40779000 24579000 16200000 12805 1023 13142 46631;46632;46633;46634;46635;46636 70374;70375;70376;70377;70378;70379;70380;70381;70382 70375 9 VIGLSSDLQQVGGASAR IGVDLIMKTCFSPNRVIGLSSDLQQVGGAS GLSSDLQQVGGASARIQDALSTVLQYAEDV R V I A R I 2 1 0 1 0 2 0 3 0 1 2 0 0 0 0 3 0 0 0 2 0 0 17 0 1656.8795 B4DMT5;B3KSH1;O00303;B4DEW9;H0YDT6 B4DMT5 212 228 EIF3F Eukaryotic translation initiation factor 3 subunit F yes no 2 1.7534E-15 153.49 6 1 0.27212 0.36778 128.08 4 Median 0.26975 0.37273 23.131 3 0 Plateau 2.8389 4.0556 NaN 1 0 Median 36878000 24153000 12725000 27831000 21604000 6226900 9046700 2549100 6497600 12806 775 13143 46637;46638;46639;46640;46641;46642;46643 70383;70384;70385;70386;70387;70388;70389;70390;70391 70383 9 VIGNQSLVNELAFTAR VGLAADVGTLQRLPKVIGNQSLVNELAFTA IGNQSLVNELAFTARKMMADEALGSGLVSR K V I A R K 2 1 2 0 0 1 1 1 0 1 2 0 0 1 0 1 1 0 0 2 0 0 16 0 1730.9315 Q13011 Q13011 215 230 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial yes yes 2 0.0036572 96.591 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3155700 3155700 0 3155700 3155700 0 0 0 0 12807 1461 13144 46644;46645;46646;46647 70392;70393;70394;70395 70392 4 VIGSELVQK CARAVANRTDACFIRVIGSELVQKYVGEGA DACFIRVIGSELVQKYVGEGARMVRELFEM R V I Q K Y 0 0 0 0 0 1 1 1 0 1 1 1 0 0 0 1 0 0 0 2 0 0 9 0 971.56515 A0A140VK70;P35998;Q75L23 A0A140VK70 240 248 PSMC2 26S protease regulatory subunit 7 yes no 2 0.019395 52.937 1 0.39418 0.47559 NaN 1 Median 0.39418 0.47559 NaN 1 0 Median NaN NaN NaN 0 0 Median 23789000 16185000 7603700 23789000 16185000 7603700 0 0 0 12808 510 13145 46648 70396 70396 1 VIGTLLGTVDK SIVDSYERRNEGAARVIGTLLGTVDKHSVE GAARVIGTLLGTVDKHSVEVTNCFSVPHNE R V I D K H 0 0 0 1 0 0 0 2 0 1 2 1 0 0 0 0 2 0 0 2 0 0 11 0 1114.6598 B4DMT5;B3KSH1;O00303 B4DMT5 66 76 EIF3F Eukaryotic translation initiation factor 3 subunit F yes no 2 0.02966 79.489 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1476800 1476800 0 1476800 1476800 0 0 0 0 12809 775 13146 46649 70397 70397 1 VIHDNFGIVEGLMTTVHAITATQK SNASCTTNCLAPLAKVIHDNFGIVEGLMTT EGLMTTVHAITATQKTVDGPSGKLWRDGRG K V I Q K T 2 0 1 1 0 1 1 2 2 3 1 1 1 1 0 0 4 0 0 3 0 0 24 0 2594.3527 V9HVZ4;P04406;Q2TSD0;E7EUT5;Q0QET7;A4UCT1 V9HVZ4 163 186 HEL-S-162eP;GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 4 2.9635E-09 82.362 3 1 0.96986 1.2226 108.83 4 Median 0.6119 0.77956 60.77 3 0 Median 4.181 6.7025 NaN 1 0 Median 151330000 45941000 105390000 29717000 22231000 7486300 121620000 23710000 97905000 12810 1231 13147;13148 46650;46651;46652;46653 70398;70399;70400;70401;70402 70402 476 5 VIHELANER LYVKDKLDETGVALKVIHELANERWDVCLT TGVALKVIHELANERWDVCLTLSEKGFQQI K V I E R W 1 1 1 0 0 0 2 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1079.5724 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 281 289 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 3 0.00092814 78.556 1 2 0.62127 0.75966 7.8688 3 Plateau 0.62127 0.85768 NaN 1 0 Median 0.52145 0.74981 1.8447 2 0 Median 63343000 39180000 24163000 47452000 29354000 18098000 15891000 9826300 6065100 12811 1437 13149 46654;46655;46656 70403;70404;70405;70406 70403 4 VIHEQVNHR MYLKDKLDETGNSLKVIHEQVNHRWEVCLT TGNSLKVIHEQVNHRWEVCLTMSEKGFQQI K V I H R W 0 1 1 0 0 1 1 0 2 1 0 0 0 0 0 0 0 0 0 2 0 0 9 0 1130.5945 P11388 P11388 288 296 TOP2A DNA topoisomerase 2-alpha yes yes 3 0.035976 52.255 1 1.0227 1.3262 NaN 1 Median 1.0227 1.3262 NaN 1 0 Median NaN NaN NaN 0 0 Median 628850 297460 331390 628850 297460 331390 0 0 0 12812 1256 13150 46657 70407 70407 1 VIHLSLAPK IKHGSQKDVRDIFERVIHLSLAPKRMKFFF RDIFERVIHLSLAPKRMKFFFKRYLDYEKQ R V I P K R 1 0 0 0 0 0 0 0 1 1 2 1 0 0 1 1 0 0 0 1 0 0 9 0 976.60695 Q14690 Q14690 1821 1829 PDCD11 Protein RRP5 homolog yes yes 2;3 0.016796 61.691 3 0.9795 1.2666 28.431 3 Median 0.9795 1.2666 28.431 3 0 Median NaN NaN NaN 0 0 Median 53967000 25696000 28272000 53967000 25696000 28272000 0 0 0 12813 1494 13151 46658;46659;46660 70408;70409;70410;70411 70408 4 VIHLSNLPHSGYSDSAVLK GKPDQKFDQKQELGRVIHLSNLPHSGYSDS SNLPHSGYSDSAVLKLAEPYGKIKNYILMR R V I L K L 1 0 1 1 0 0 0 1 2 1 3 1 0 0 1 4 0 0 1 2 0 0 19 0 2036.0691 A0A0R4J2E8;A8MXP9;P43243;D6REM6;Q68D11;H0Y8T4;Q5CZA7;B3KM87;B4DRS1;B4DF66;Q9H4N1;D6RBK5 A0A0R4J2E8 497 515 MATR3;DKFZp686K23100;DKFZp686K0542 Matrin-3 yes no 3;4 0.0029388 29.027 2 0.34244 0.42984 5.3306 2 Median 0.34244 0.42984 5.3306 2 0 Median NaN NaN NaN 0 0 Median 71599000 52227000 19372000 71599000 52227000 19372000 0 0 0 12814 445 13152 46661;46662 70412;70413;70414 70412 3 VIIIGSGVSGLAAAR IYKRIKPLPTKKTGKVIIIGSGVSGLAAAR VIIIGSGVSGLAAARQLQSFGMDVTLLEAR K V I A R Q 3 1 0 0 0 0 0 3 0 3 1 0 0 0 0 2 0 0 0 2 0 0 15 0 1382.8245 A8K2R3;O60341 A8K2R3 159 173 KDM1A Lysine-specific histone demethylase 1A yes no 2 1.6864E-06 82.171 4 0.5069 0.68624 21.12 4 Median 0.5069 0.68624 21.12 4 0 Median NaN NaN NaN 0 0 Median 25574000 15307000 10267000 25574000 15307000 10267000 0 0 0 12815 583 13153 46663;46664;46665;46666 70415;70416;70417;70418 70418 4 VIILGDSGVGK ______________________________ VLLKVIILGDSGVGKTSLMNQYVNKKFSNQ K V I G K T 0 0 0 1 0 0 0 3 0 2 1 1 0 0 0 1 0 0 0 2 0 0 11 0 1056.6179 A0A158RFU6;P51149;C9J592;C9J4S4;C9J4V0;C9J8S3;B4DPH9;C9J7D1;C9IZZ0 A0A158RFU6 11 21 RAB7A Ras-related protein Rab-7a yes no 2 0.002554 87.806 4 0.69377 0.87609 22.581 4 Median 0.69377 0.87609 22.581 4 0 Median NaN NaN NaN 0 0 Median 40503000 24726000 15777000 40503000 24726000 15777000 0 0 0 12816 515 13154 46667;46668;46669;46670 70419;70420;70421;70422;70423;70424;70425 70425 7 VIISAPSADAPMFVMGVNHEK TMEKAGAHLQGGAKRVIISAPSADAPMFVM SADAPMFVMGVNHEKYDNSLKIISNASCTT R V I E K Y 3 0 1 1 0 0 1 1 1 2 0 1 2 1 2 2 0 0 0 3 0 0 21 0 2212.102 V9HVZ4;P04406;E7EUT5;Q0QET7;A4UCT1;B4DRV9 V9HVZ4 119 139 HEL-S-162eP;GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 3 3.4804E-06 61.222 1 3.4817 5.2408 NaN 1 Median NaN NaN NaN 0 0 Median 3.4817 5.2408 NaN 1 0 Median 17512000 4932400 12579000 0 0 0 17512000 4932400 12579000 12817 1231 13155 46671 70426 70426 477;478 1 VIISTNIAETSITITGIK QQLRVFQGAPKGYRKVIISTNIAETSITIT STNIAETSITITGIKYVVDTGMVKAKKYNP K V I I K Y 1 0 1 0 0 0 1 1 0 6 0 1 0 0 0 2 4 0 0 1 0 0 18 0 1873.0772 B4DIS6;Q9H6R0;I3L1L6;Q9NPV4 B4DIS6 409 426 DHX33;DKFZp762F2011 Putative ATP-dependent RNA helicase DHX33 yes no 2 5.0413E-13 92.925 3 1.0992 1.377 27.152 2 Median 1.0992 1.377 27.152 2 0 Median NaN NaN NaN 0 0 Median 9337500 4609800 4727600 9337500 4609800 4727600 0 0 0 12818 811 13156 46672;46673;46674 70427;70428;70429 70428 3 VIITNFPAAK NDTAPRAMAVLESLRVIITNFPAAKSLDIQ LESLRVIITNFPAAKSLDIQVPNFPADETK R V I A K S 2 0 1 0 0 0 0 0 0 2 0 1 0 1 1 0 1 0 0 1 0 0 10 0 1072.6281 B4DNN3;Q53HS0;A8K3A8;P47897;Q9H3A5;Q9BUZ3;B4DDN1;Q96AW5;A0A1B0GVU9;H7C0R3 B4DNN3 527 536 QARS Glutamine--tRNA ligase yes no 2 0.012504 66.621 3 2 0.4631 0.59674 75.517 5 Median 0.43096 0.5476 5.2763 3 0 Median 1.6004 2.2232 6.2945 2 0 Median 24729000 14373000 10356000 16568000 11459000 5109700 8160500 2914300 5246200 12819 591 13157 46675;46676;46677;46678;46679 70430;70431;70432;70433;70434;70435;70436 70432 7 VILESEVIAEAVGVK EYVYERMTGLRWKCKVILESEVIAEAVGVK VILESEVIAEAVGVKKTVKYEAAGEAVKTL K V I V K K 2 0 0 0 0 0 3 1 0 2 1 1 0 0 0 1 0 0 0 4 0 0 15 0 1554.8869 Q6NUN2;A3F769;A3F768;O15226;A2I829 Q6NUN2 482 496 NKRF;NRF NF-kappa-B-repressing factor yes no 2 0.00016364 62.408 1 0.48487 0.61533 NaN 1 Median 0.48487 0.61533 NaN 1 0 Median NaN NaN NaN 0 0 Median 7047000 4869000 2178000 7047000 4869000 2178000 0 0 0 12820 541 13158 46680 70437 70437 1 VILGGDHYFR GKHILEITVLRHGDRVILGGDHYFRFNHPV RHGDRVILGGDHYFRFNHPVEVQKGKRPSG R V I F R F 0 1 0 1 0 0 0 2 1 1 1 0 0 1 0 0 0 0 1 1 0 0 10 0 1175.6087 Q15058 Q15058 888 897 KIF14 Kinesin-like protein KIF14 yes yes 3 0.010199 34.692 1 0.57272 0.77486 NaN 1 Median 0.57272 0.77486 NaN 1 0 Median NaN NaN NaN 0 0 Median 8122600 4794000 3328600 8122600 4794000 3328600 0 0 0 12821 1504 13159 46681 70438 70438 1 VIMSDLQIR TDLAVLQWVEELEQRVIMSDLQIRGWTCPS EELEQRVIMSDLQIRGWTCPSPDSTREDLA R V I I R G 0 1 0 1 0 1 0 0 0 2 1 0 1 0 0 1 0 0 0 1 0 0 9 0 1073.5903 J3QK86;J3KPG5;F8VU39;Q9UIF9;A0A0C4DGI9 J3QK86 1496 1504 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 0.024414 40.778 1 0.86639 1.1261 NaN 1 Median NaN NaN NaN 0 0 Median 0.86639 1.1261 NaN 1 0 Median 4006300 2235600 1770700 0 0 0 4006300 2235600 1770700 12822 1062 13160 46682 70439 70439 379 1 VINEPTAAALAYGLDK ATKDAGQISGLNVLRVINEPTAAALAYGLD INEPTAAALAYGLDKSEDKVIAVYDLGGGT R V I D K S 4 0 1 1 0 0 1 1 0 1 2 1 0 0 1 0 1 0 1 1 0 0 16 0 1644.8723 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;Q2F839 B7Z4V2 205 220 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 1.4174E-24 124.86 4 2 0.46983 0.57762 128.02 6 Median 0.42466 0.51764 12.448 4 0 Median 3.9393 6.1528 2.11 2 0 Median 140530000 72039000 68489000 83698000 60098000 23600000 56830000 11940000 44890000 12823 910 13161 46683;46684;46685;46686;46687;46688 70440;70441;70442;70443;70444;70445;70446;70447 70443 7 VINLNDNTFTEK ITAPAQAFAVNPLLRVINLNDNTFTEKGAV LLRVINLNDNTFTEKGAVAMAETLKTLRQV R V I E K G 0 0 3 1 0 0 1 0 0 1 1 1 0 1 0 0 2 0 0 1 0 0 12 0 1406.7042 B4DY16;A0A024R1U0;P46060;B4E0U0;H0Y4Q3 B4DY16 185 196 RANGAP1 Ran GTPase-activating protein 1 yes no 2 0.0006608 98.754 2 0.3223 0.40718 NaN 1 Median 0.3223 0.40718 NaN 1 0 Median NaN NaN NaN 0 0 Median 8781400 8066200 715140 8781400 8066200 715140 0 0 0 12824 70 13162 46689;46690 70448;70449 70449 2 VINTGIK KELRNVLLNNSEKMKVINTGIKVWCRNNSG LNNSEKMKVINTGIKVWCRNNSGEEFDCAF K V I I K V 0 0 1 0 0 0 0 1 0 2 0 1 0 0 0 0 1 0 0 1 0 0 7 0 743.45414 Q08J23 Q08J23 580 586 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 0.046217 50.966 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4638400 4638400 0 4638400 4638400 0 0 0 0 12825 1451 13163 46691 70450 70450 1 VIPEDASESEEK EPKISNDNPEEHVLKVIPEDASESEEKLDQ VLKVIPEDASESEEKLDQKEDGSKYETIHL K V I E K L 1 0 0 1 0 0 4 0 0 1 0 1 0 0 1 2 0 0 0 1 0 0 12 0 1331.6093 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 915 926 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 2.7427E-05 90.108 4 2 0.85339 1.0919 23.197 6 Median 0.80827 1.0262 8.5392 4 0 Median 1.0496 1.5846 4.4926 2 0 Median 79117000 42213000 36904000 49781000 28346000 21435000 29336000 13867000 15469000 12826 729 13164 46692;46693;46694;46695;46696;46697 70451;70452;70453;70454;70455;70456;70457;70458 70453 8 VIPEDGPAAQNPENVK RSSFDEMLPGTHFQRVIPEDGPAAQNPENV IPEDGPAAQNPENVKRLLFCTGKVYYDLTR R V I V K R 2 0 2 1 0 1 2 1 0 1 0 1 0 0 3 0 0 0 0 2 0 0 16 0 1676.837 B4DF00;E9PDF2;E9PCR7;Q02218;A0A0D9SFS3;B4DZ95;B4E3E9;B4DH65;E9PFG7;B4DK55 B4DF00 835 850 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 2 0.026383 77.74 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 726660 726660 0 726660 726660 0 0 0 0 12827 800 13165 46698 70459 70459 1 VIPLDRDNK ECRMIGLRLYDGLFKVIPLDRDNKELKAFN YDGLFKVIPLDRDNKELKAFNIRLEELHVI K V I N K E 0 1 1 2 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 9 1 1068.5928 Q16531;F5GY55;B7Z2A1;F5H2L3;F5GWI0 Q16531 142 150 DDB1 DNA damage-binding protein 1 yes no 3 0.0023436 90.709 4 0.79828 1.048 14.733 4 Median 0.79828 1.048 14.733 4 0 Median NaN NaN NaN 0 0 Median 199730000 109650000 90078000 199730000 109650000 90078000 0 0 0 12828 1520 13166 46699;46700;46701;46702 70460;70461;70462;70463;70464 70462 5 VIQAGMFDQK KILAAAKYKLNVDQKVIQAGMFDQKSSSHE NVDQKVIQAGMFDQKSSSHERRAFLQAILE K V I Q K S 1 0 0 1 0 2 0 1 0 1 0 1 1 1 0 0 0 0 0 1 0 0 10 0 1135.5696 A7E2E1;Q9HBD4;B9EGQ8;A0A0A0MT49;P51532;B4E0F1;B4DSI8;B3KNW7;P51531;A0A0U1RQZ9;F6VDE0;B4DK35;B4DSC8 A7E2E1 1228 1237 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 0.0017379 68.016 4 1.0219 1.5185 15.676 4 Median NaN NaN NaN 0 0 Median 1.0219 1.5185 15.676 4 0 Median 34782000 17133000 17649000 0 0 0 34782000 17133000 17649000 12829 403;1362 13167 46703;46704;46705;46706 70465;70466;70467;70468;70469;70470;70471;70472 70472 126 8 VIQCYIQYGNEEQR QGKIKTIAFAHDSTRVIQCYIQYGNEEQRK RVIQCYIQYGNEEQRKQAFEELRDDLVELS R V I Q R K 0 1 1 0 1 3 2 1 0 2 0 0 0 0 0 0 0 0 2 1 0 0 14 0 1798.8308 Q15397;B2RDG4 Q15397 182 195 KIAA0020 Pumilio domain-containing protein KIAA0020 yes no 2 2.3985E-05 112.94 1 0.84616 1.1712 NaN 1 Median 0.84616 1.1712 NaN 1 0 Median NaN NaN NaN 0 0 Median 1810800 893070 917760 1810800 893070 917760 0 0 0 12830 1511 13168 46707 70473 70473 1 VIQCYIQYGNEEQRK QGKIKTIAFAHDSTRVIQCYIQYGNEEQRK VIQCYIQYGNEEQRKQAFEELRDDLVELSK R V I R K Q 0 1 1 0 1 3 2 1 0 2 0 1 0 0 0 0 0 0 2 1 0 0 15 1 1926.9258 Q15397;B2RDG4 Q15397 182 196 KIAA0020 Pumilio domain-containing protein KIAA0020 yes no 3 5.5641E-06 70.529 1 1 0.65492 0.84738 NaN 1 Median 0.65492 0.84738 NaN 1 0 Median NaN NaN NaN 0 0 Median 13417000 9248100 4169000 10718000 6549100 4169000 2699000 2699000 0 12831 1511 13169 46708;46709 70474;70475 70474 2 VIQEGLEGLVLK KRVTKALDLADMITRVIQEGLEGLVLKDVK ITRVIQEGLEGLVLKDVKGTYEPGKRHWLK R V I L K D 0 0 0 0 0 1 2 2 0 1 3 1 0 0 0 0 0 0 0 2 0 0 12 0 1296.7653 P49916;B7Z6I3 P49916 649 660 LIG3 DNA ligase 3;DNA ligase yes no 2 4.3705E-05 130.41 4 2 0.85396 1.0953 30.458 6 Median 0.76018 0.97446 13.097 4 0 Median 1.1258 1.7053 4.6734 2 0 Median 63111000 32854000 30257000 30378000 16837000 13541000 32733000 16017000 16716000 12832 1356 13170 46710;46711;46712;46713;46714;46715 70476;70477;70478;70479;70480;70481;70482;70483 70478 8 VIQEIVDK VPRNLVGKVIGKNGKVIQEIVDKSGVVRVR VIGKNGKVIQEIVDKSGVVRVRIEGDNENK K V I D K S 0 0 0 1 0 1 1 0 0 2 0 1 0 0 0 0 0 0 0 2 0 0 8 0 942.5386 A0A0F7KYT8;A0A0F7L0Q8;B4DXZ6;A0A0F7L1S3;P51114;B4DM78;E7EU85;B4DGH9;E9PFF5;B4DM21;P51116 A0A0F7KYT8 303 310 FXR1;FXR2 Fragile X mental retardation syndrome-related protein 1;Fragile X mental retardation syndrome-related protein 2 no no 2 0.0074839 85.212 3 1 0.7658 0.9499 18.981 4 Median 0.75066 0.9484 0.30997 3 0 Median 0.9875 1.3863 NaN 1 0 Median 49456000 26082000 23375000 45364000 24129000 21235000 4092400 1952800 2139600 12833 438;1360 13171 46716;46717;46718;46719 70484;70485;70486;70487;70488 70487 5 VIQENEHALQK PEIQKEHRNLLQELKVIQENEHALQKDALS QELKVIQENEHALQKDALSIKLKLEQIDGH K V I Q K D 1 0 1 0 0 2 2 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 11 0 1307.6834 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 999 1009 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 2.3126E-25 208.6 8 4 0.7016 0.96149 5.3891 12 Median 0.7209 0.9378 5.1629 8 0 Median 0.62104 1.0053 3.2876 4 0 Median 905090000 533570000 371520000 689060000 400790000 288270000 216030000 132780000 83256000 12834 1760 13172 46720;46721;46722;46723;46724;46725;46726;46727;46728;46729;46730;46731 70489;70490;70491;70492;70493;70494;70495;70496;70497;70498;70499;70500;70501;70502;70503;70504;70505;70506;70507;70508;70509;70510 70489 22 VIQIATSSSTAK RALTQFPLPKNLLAKVIQIATSSSTAKNLM LAKVIQIATSSSTAKNLMQFHTVGTKTKLS K V I A K N 2 0 0 0 0 1 0 0 0 2 0 1 0 0 0 3 2 0 0 1 0 0 12 0 1204.6663 H7BXY3;A0A024R2T6;Q7L2E3 H7BXY3 224 235 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 1.8297E-05 115.7 4 0.72531 0.91765 13.187 4 Median 0.72531 0.91765 13.187 4 0 Median NaN NaN NaN 0 0 Median 25971000 14075000 11896000 25971000 14075000 11896000 0 0 0 12835 93 13173 46732;46733;46734;46735 70511;70512;70513;70514;70515;70516;70517 70516 7 VIQLLFK TAEQENEPTVGVIPRVIQLLFKEIDKKSDF PTVGVIPRVIQLLFKEIDKKSDFEFTLKVS R V I F K E 0 0 0 0 0 1 0 0 0 1 2 1 0 1 0 0 0 0 0 1 0 0 7 0 859.55312 Q59HG1;O95239;Q6PKB2;B4DYE2;Q2VIQ3 Q59HG1 121 127 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.02146 77.748 4 2 0.85445 1.0672 11.434 6 Median 0.86232 1.0804 13.803 4 0 Median 0.69139 1.0519 0.35105 2 0 Median 128040000 69715000 58327000 83950000 43256000 40693000 44092000 26459000 17634000 12836 1216 13174 46736;46737;46738;46739;46740;46741 70518;70519;70520;70521;70522;70523;70524;70525;70526;70527;70528 70522 11 VIQQLEGAFALVFK NRESQDTSFTTLVERVIQQLEGAFALVFKS RVIQQLEGAFALVFKSVHFPGQAVGTRRGS R V I F K S 2 0 0 0 0 2 1 1 0 1 2 1 0 2 0 0 0 0 0 2 0 0 14 0 1561.8868 Q06210;E5RJP4;B4DN38;A0A0S2Z4W6;B3KMR8;B2RB90;A0A0S2Z4X9;O94808 Q06210 177 190 GFPT1;GFPT2 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1;Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 yes no 2 2.3212E-20 167.12 3 1.241 1.5783 31.17 2 Median 1.241 1.5783 31.17 2 0 Median NaN NaN NaN 0 0 Median 4834900 2361400 2473500 4834900 2361400 2473500 0 0 0 12837 1445 13175 46742;46743;46744 70529;70530;70531;70532;70533;70534;70535 70532 7 VIQVDEMIVEEEEEEENERK AEAIQTPLKSAKTRKVIQVDEMIVEEEEEE EMIVEEEEEEENERKNLQTARVKRCPPSKK K V I R K N 0 1 1 1 0 1 9 0 0 2 0 1 1 0 0 0 0 0 0 3 0 0 20 1 2475.1323 A8K7A2;Q53HL2;B4DXT3 A8K7A2 116 135 CDCA8 Borealin yes no 3 1.5808E-18 130.95 6 4 0.81307 1.2162 16.886 10 Median 1.0251 1.3676 20.438 6 0 Median 0.67858 1.1649 4.8139 4 0 Median 550540000 328380000 222160000 65807000 30324000 35483000 484730000 298050000 186680000 12838 632 13176;13177 46745;46746;46747;46748;46749;46750;46751;46752;46753;46754 70536;70537;70538;70539;70540;70541;70542;70543;70544;70545;70546;70547;70548;70549;70550;70551;70552 70540 212 17 VIQYLAYVASSHK CTGESGAGKTENTKKVIQYLAYVASSHKSK KKVIQYLAYVASSHKSKKDQGELERQLLQA K V I H K S 2 0 0 0 0 1 0 0 1 1 1 1 0 0 0 2 0 0 2 2 0 0 13 0 1477.7929 A0A024R1N1;P35579;Q86XU5;B4E3S1;Q5BKV1;Q9UMJ0 A0A024R1N1 187 199 MYH9 Myosin-9 yes no 2;3 2.6306E-05 97.452 6 1.0637 1.3397 9.064 6 Median 1.0637 1.3397 9.064 6 0 Median NaN NaN NaN 0 0 Median 246920000 129050000 117860000 246920000 129050000 117860000 0 0 0 12839 61 13178 46755;46756;46757;46758;46759;46760 70553;70554;70555;70556;70557;70558;70559;70560;70561 70561 9 VISALSEQANQR KEGVSINKSLLTLGKVISALSEQANQRSVF LGKVISALSEQANQRSVFIPYRESVLTWLL K V I Q R S 2 1 1 0 0 2 1 0 0 1 1 0 0 0 0 2 0 0 0 1 0 0 12 0 1314.6892 Q15058 Q15058 636 647 KIF14 Kinesin-like protein KIF14 yes yes 2 8.9036E-16 170.47 4 0.66419 0.90255 4.7654 2 Median 0.66419 0.90255 4.7654 2 0 Median NaN NaN NaN 0 0 Median 17379000 13029000 4350100 17379000 13029000 4350100 0 0 0 12840 1504 13179 46761;46762;46763;46764 70562;70563;70564;70565;70566 70562 5 VISELNGK LDSVGIEADDDRLNKVISELNGKNIEDVIA DDDRLNKVISELNGKNIEDVIAQGIGKLAS K V I G K N 0 0 1 0 0 0 1 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 8 0 858.48108 A0A024RCA7;P05387 A0A024RCA7 42 49 RPLP2 60S acidic ribosomal protein P2 yes no 2 0.012091 69.176 2 0.62264 0.91678 2.2891 2 Median NaN NaN NaN 0 0 Median 0.62264 0.91678 2.2891 2 0 Median 20449000 13090000 7358900 0 0 0 20449000 13090000 7358900 12841 291 13180 46765;46766 70567;70568;70569 70568 3 VISGVLQLGNIVFK RIMGIPEEEQMGLLRVISGVLQLGNIVFKK RVISGVLQLGNIVFKKERNTDQASMPDNTA R V I F K K 0 0 1 0 0 1 0 2 0 2 2 1 0 1 0 1 0 0 0 3 0 0 14 0 1485.8919 A0A024R1N1;P35579;Q86XU5;B4E3S1 A0A024R1N1 342 355 MYH9 Myosin-9 yes no 2 9.3897E-36 199.19 5 0.95002 1.2178 3.6411 5 Median 0.95002 1.2178 3.6411 5 0 Median NaN NaN NaN 0 0 Median 419970000 215140000 204830000 419970000 215140000 204830000 0 0 0 12842 61 13181 46767;46768;46769;46770;46771 70570;70571;70572;70573;70574;70575;70576;70577 70577 8 VISGVLQLGNIVFKK RIMGIPEEEQMGLLRVISGVLQLGNIVFKK VISGVLQLGNIVFKKERNTDQASMPDNTAA R V I K K E 0 0 1 0 0 1 0 2 0 2 2 2 0 1 0 1 0 0 0 3 0 0 15 1 1613.9869 A0A024R1N1;P35579;Q86XU5;B4E3S1 A0A024R1N1 342 356 MYH9 Myosin-9 yes no 2;3 1.3492E-14 141.1 8 2 1.0208 1.2555 55.98 9 Median 1.0175 1.2526 5.0791 8 0 Median 4.212 6.6772 NaN 1 0 Median 421420000 198180000 223250000 392880000 193980000 198900000 28546000 4197500 24348000 12843 61 13182 46772;46773;46774;46775;46776;46777;46778;46779;46780;46781 70578;70579;70580;70581;70582;70583;70584;70585;70586;70587;70588;70589;70590;70591;70592 70583 15 VITDIAGVIPAEK QSATRLTGGKEITEKVITDIAGVIPAEKID EKVITDIAGVIPAEKIDGVFAACQSGSFDK K V I E K I 2 0 0 1 0 0 1 1 0 3 0 1 0 0 1 0 1 0 0 2 0 0 13 0 1324.7602 P35249;H7C1P0 P35249 261 273 RFC4 Replication factor C subunit 4 yes no 2 0.0053259 43.306 1 1.3039 1.9266 NaN 1 Median NaN NaN NaN 0 0 Median 1.3039 1.9266 NaN 1 0 Median 6600100 2921300 3678800 0 0 0 6600100 2921300 3678800 12844 1317 13183 46782 70593 70593 1 VITDVYYVDGTEVER RHMRTIREVRTLVTRVITDVYYVDGTEVER VITDVYYVDGTEVERKVTEETEEPIVECQE R V I E R K 0 1 0 2 0 0 2 1 0 1 0 0 0 0 0 0 2 0 2 4 0 0 15 0 1756.8519 A6NNK5;Q12888;B7Z3E7;M0R142 A6NNK5 1258 1272 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 2 0.0015553 114.24 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 362310 362310 0 362310 362310 0 0 0 0 12845 572 13184 46783 70594 70594 1 VITEYLNAQESAK GLVMVEVRKEKQFQKVITEYLNAQESAKSA QKVITEYLNAQESAKSARLNLWRYGDFRAD K V I A K S 2 0 1 0 0 1 2 0 0 1 1 1 0 0 0 1 1 0 1 1 0 0 13 0 1464.746 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B4E299;B3KU67 A0A140VK49 874 886 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 1.461E-05 152.85 4 1 0.64177 0.81232 60.332 5 Median 0.60526 0.76722 10.347 4 0 Median 1.9907 2.8856 NaN 1 0 Median 31937000 18488000 13449000 26712000 16893000 9819000 5224200 1594200 3630000 12846 508 13185 46784;46785;46786;46787;46788 70595;70596;70597;70598;70599;70600;70601;70602 70596 8 VITFANQDDYISFR ILRYLFPVPKDDSHRVITFANQDDYISFRH RVITFANQDDYISFRHHVYKKTDHRNVELT R V I F R H 1 1 1 2 0 1 0 0 0 2 0 0 0 2 0 1 1 0 1 1 0 0 14 0 1687.8206 H0Y714;Q96G21;E7ENR5;B8ZZ47;B9A008 H0Y714 206 219 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 2 2.5075E-27 188.96 4 2 0.82906 1.1311 12.517 6 Median 0.89542 1.21 7.0062 4 0 Median 0.59099 0.94653 1.626 2 0 Median 215730000 122040000 93695000 130900000 70064000 60840000 84831000 51975000 32856000 12847 1094 13186 46789;46790;46791;46792;46793;46794 70603;70604;70605;70606;70607;70608;70609;70610;70611;70612;70613 70603 11 VITIMQNPR LTKRAGELTEDEVERVITIMQNPRQYKIPD EDEVERVITIMQNPRQYKIPDWFLNRQKDV R V I P R Q 0 1 1 0 0 1 0 0 0 2 0 0 1 0 1 0 1 0 0 1 0 0 9 0 1070.5906 P62269 P62269 67 75 RPS18 40S ribosomal protein S18 yes yes 2 0.00074153 111.01 2 1 0.85084 1.1721 4.6091 2 Median 0.85084 1.1721 4.6091 2 0 Median NaN NaN NaN 0 0 Median 28622000 9818900 18803000 19004000 9818900 9185200 9617700 0 9617700 12848 1402 13187;13188 46795;46796;46797 70614;70615;70616;70617;70618 70617 5 VITMFVQR NSIPGIESPFEQAKKVITMFVQRQVFAENK PFEQAKKVITMFVQRQVFAENKDEIALVLF K V I Q R Q 0 1 0 0 0 1 0 0 0 1 0 0 1 1 0 0 1 0 0 2 0 0 8 0 992.54772 P13010;Q53TC2;C9JZ81;H7C0H9 P13010 37 44 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 0.012208 67.032 2 2 0.45031 0.68785 0.20322 2 Median NaN NaN NaN 0 0 Median 0.45031 0.68785 0.20322 2 0 Median 43623000 33055000 10567000 6103900 6103900 0 37519000 26952000 10567000 12849 1262 13189;13190 46798;46799;46800;46801 70619;70620;70621;70622;70623 70621 526 5 VIVDANNLTVEIENELNIIHK ASEVMGPVEAAPEYRVIVDANNLTVEIENE NLTVEIENELNIIHKFIRDKYSKRFPELES R V I H K F 1 0 4 1 0 0 3 0 1 4 2 1 0 0 0 0 1 0 0 3 0 0 21 0 2389.2853 E7EU94;E7ESX0;E7EN72;B4DWW8;E7EVX8;Q8WWY3 E7EU94 92 112 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 3 9.4996E-09 118.52 3 0.56805 0.71714 NaN 1 Median 0.56805 0.71714 NaN 1 0 Median NaN NaN NaN 0 0 Median 14195000 10678000 3517200 14195000 10678000 3517200 0 0 0 12850 866 13191 46802;46803;46804 70624;70625;70626;70627 70624 4 VIVVGDLSVGK LRFPITNSAGFKISKVIVVGDLSVGKTCLI KISKVIVVGDLSVGKTCLINRFCKDTFDKN K V I G K T 0 0 0 1 0 0 0 2 0 1 1 1 0 0 0 1 0 0 0 4 0 0 11 0 1084.6492 C9JY26;Q6NXT3;A0A024QZ68;Q9BZG1;C9JBG0;Q96PJ7;E7ES60;B4DNC0;K7EIF2;H7C0Y7 C9JY26 55 65 RAB34 Ras-related protein Rab-34 yes no 2 0.013694 54.416 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1973100 1973100 0 1973100 1973100 0 0 0 0 12851 7 13192 46805 70628 70628 1 VIYQQIIQTYLTVCK SFIQDQEEDYLKLHRVIYQQIIQTYLTVCK VIYQQIIQTYLTVCKDVVMVGLGDHQFQMQ R V I C K D 0 0 0 0 1 3 0 0 0 3 1 1 0 0 0 0 2 0 2 2 0 0 15 0 1869.007 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 875 889 NCAPG2 Condensin-2 complex subunit G2 yes no 2 1.0486E-14 140.39 3 0.69942 0.89799 3.6027 3 Median 0.69942 0.89799 3.6027 3 0 Median NaN NaN NaN 0 0 Median 33866000 18869000 14997000 33866000 18869000 14997000 0 0 0 12852 1621 13193 46806;46807;46808 70629;70630;70631;70632 70631 4 VIYVLPMLTIK EILGASLSAPLTSYKVIYVLPMLTIKEDKG TSYKVIYVLPMLTIKEDKGTGVVTSVPSDS K V I I K E 0 0 0 0 0 0 0 0 0 2 2 1 1 0 1 0 1 0 1 2 0 0 11 0 1288.7829 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3 B4E266 325 335 LARS Leucine--tRNA ligase, cytoplasmic yes no 2 0.011827 47.823 1 1 1.0985 1.4432 NaN 1 Median 1.0985 1.4432 NaN 1 0 Median NaN NaN NaN 0 0 Median 3366300 563010 2803300 1100600 563010 537550 2265700 0 2265700 12853 732 13194;13195 46809;46810 70633;70634 70633 2 VKEPSVQEATSTSDILK EKKEKTPELPEPSVKVKEPSVQEATSTSDI EPSVQEATSTSDILKVPKPEPIPEPKEPSP K V K L K V 1 0 0 1 0 1 2 0 0 1 1 2 0 0 1 3 2 0 0 2 0 0 17 1 1830.9575 A0A0S2Z4W1;A9Z1X7;B7Z7U0;A0A0S2Z4Z6;Q8IYB3;M0R088;E9PCT1;B4DED5 A0A0S2Z4W1 230 246 SRRM1 Serine/arginine repetitive matrix protein 1 yes no 3 5.6351E-11 137.52 2 0.44279 0.54335 8.3999 2 Median 0.44279 0.54335 8.3999 2 0 Median NaN NaN NaN 0 0 Median 11457000 7340900 4115900 11457000 7340900 4115900 0 0 0 12854 471 13196 46811;46812 70635;70636 70635 2 VKLEAEIATYR GQRQAQEYEALLNIKVKLEAEIATYRRLLE LNIKVKLEAEIATYRRLLEDGEDFK_____ K V K Y R R 2 1 0 0 0 0 2 0 0 1 1 1 0 0 0 0 1 0 1 1 0 0 11 1 1291.7136 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__P05784 F8VZY9 371 381 KRT18 Keratin, type I cytoskeletal 18 no no 2;3 0.00035579 91.549 3 0.22709 0.29619 3.8192 2 Median 0.22709 0.29619 3.8192 2 0 Median NaN NaN NaN 0 0 Median 87962000 72421000 15542000 87962000 72421000 15542000 0 0 0 + 12855 252;954 13197 46813;46814;46815 70637;70638;70639 70639 3 VKLEAEIATYRR GQRQAQEYEALLNIKVKLEAEIATYRRLLE NIKVKLEAEIATYRRLLEDGEDFK______ K V K R R L 2 2 0 0 0 0 2 0 0 1 1 1 0 0 0 0 1 0 1 1 0 0 12 2 1447.8147 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__P05784 F8VZY9 371 382 KRT18 Keratin, type I cytoskeletal 18 no no 3 0.0058044 41.242 1 0.20257 0.25016 NaN 1 Median 0.20257 0.25016 NaN 1 0 Median NaN NaN NaN 0 0 Median 12268000 10292000 1976700 12268000 10292000 1976700 0 0 0 + 12856 252;954 13198 46816 70640 70640 1 VKPAPDETSFSEALLK ______________________________ KPAPDETSFSEALLKRNQDLAPNSAEQASI R V K L K R 2 0 0 1 0 0 2 0 0 0 2 2 0 1 2 2 1 0 0 1 0 0 16 1 1730.9091 B4DY09;Q53FG3;F4ZW62;Q12905;X6R6Z1;A0A0A0MRL0 B4DY09 6 21 ILF2 Interleukin enhancer-binding factor 2 yes no 3 8.7029E-06 102.03 3 0.91568 1.1402 17.134 3 Plateau 0.91568 1.1402 17.134 3 0 Plateau NaN NaN NaN 0 0 Median 33813000 17992000 15821000 33813000 17992000 15821000 0 0 0 12857 871 13199 46817;46818;46819 70641;70642;70643 70642 3 VKPDVVQDK IKQRDKRLEWEMMCRVKPDVVQDKETERNL WEMMCRVKPDVVQDKETERNLQRIATRGVV R V K D K E 0 0 0 2 0 1 0 0 0 0 0 2 0 0 1 0 0 0 0 3 0 0 9 1 1026.571 Q9Y3B9;A8K201 Q9Y3B9 148 156 RRP15 RRP15-like protein yes no 2 0.0028002 111.17 2 0.80345 0.98694 0.16192 2 Median 0.80345 0.98694 0.16192 2 0 Median NaN NaN NaN 0 0 Median 119720000 77429000 42290000 119720000 77429000 42290000 0 0 0 12858 1816 13200 46820;46821 70644;70645;70646 70645 3 VKPDVVQDKETER IKQRDKRLEWEMMCRVKPDVVQDKETERNL CRVKPDVVQDKETERNLQRIATRGVVQLFN R V K E R N 0 1 0 2 0 1 2 0 0 0 0 2 0 0 1 0 1 0 0 3 0 0 13 2 1541.8049 Q9Y3B9;A8K201 Q9Y3B9 148 160 RRP15 RRP15-like protein yes no 3 0.038696 61.423 1 0.76708 0.93676 NaN 1 Median 0.76708 0.93676 NaN 1 0 Median NaN NaN NaN 0 0 Median 1881800 878290 1003500 1881800 878290 1003500 0 0 0 12859 1816 13201 46822 70647 70647 1 VKPLLQVSR YLKLRNWQWWRLFTKVKPLLQVSRQEEEMM WRLFTKVKPLLQVSRQEEEMMAKEEELVKV K V K S R Q 0 1 0 0 0 1 0 0 0 0 2 1 0 0 1 1 0 0 0 2 0 0 9 1 1038.655 A0A024R1N1;P35579;Q86XU5;B4E3S1;A0A0U4BW16 A0A024R1N1 834 842 MYH9 Myosin-9 no no 3 0.008407 70.399 2 0.96374 1.2712 2.5393 2 Median 0.96374 1.2712 2.5393 2 0 Median NaN NaN NaN 0 0 Median 230180000 115940000 114240000 230180000 115940000 114240000 0 0 0 12860 61;490 13202 46823;46824 70648;70649;70650 70650 3 VKPTELCAGHLIGGTDSCQGDSGGPLVCFEK IENKVCNRNEYLDGRVKPTELCAGHLIGGT SCQGDSGGPLVCFEKDKYILQGVTSWGLGC R V K E K D 1 0 0 2 3 1 2 6 1 1 3 2 0 1 2 2 2 0 0 2 0 0 31 1 3288.5213 CON__P06868 CON__P06868 741 771 yes yes 4 0.0058389 52.463 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3755000 3755000 0 3755000 3755000 0 0 0 0 + 12861 956 13203 46825 70651 70651 1 VKVDEVGGEALGR LSAEEKAAVTSLFAKVKVDEVGGEALGRLL AKVKVDEVGGEALGRLLVVYPWTQRFFESF K V K G R L 1 1 0 1 0 0 2 3 0 0 1 1 0 0 0 0 0 0 0 3 0 0 13 1 1327.7096 CON__Q3SX09;CON__P02070 CON__Q3SX09 73 85 yes no 2;3 0.043041 52.693 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39558000 39558000 0 39558000 39558000 0 0 0 0 + 12862 969 13204 46826;46827 70652;70653 70653 2 VKVEEEEEEKVAEEEETSVK EDEITEKKAKKAKIKVKVEEEEEEKVAEEE EEEEKVAEEEETSVKKKKKRGKKKHIKEEP K V K V K K 1 0 0 0 0 0 10 0 0 0 0 3 0 0 0 1 1 0 0 4 0 0 20 2 2348.1119 Q9Y2X3;B3KN82 Q9Y2X3 466 485 NOP58 Nucleolar protein 58 yes no 3 0.00098145 65.287 2 0.77663 0.8747 47.688 2 Median 0.77663 0.8747 47.688 2 0 Median NaN NaN NaN 0 0 Median 18371000 8545800 9825400 18371000 8545800 9825400 0 0 0 12863 1810 13205 46828;46829 70654;70655;70656 70655 3 VLAATDLDAEEEVVAGEFGSR LAFSTKEEQQQLLQKVLAATDLDAEEEVVA LDAEEEVVAGEFGSRSSQASRRFGTMSSMS K V L S R S 4 1 0 2 0 0 4 2 0 0 2 0 0 1 0 1 1 0 0 3 0 0 21 0 2177.0488 G3V1S1;B3KTH1;B3KRG2;Q53HW5;A8K359;P19447 G3V1S1 652 672 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit yes no 2 1.7919E-07 87.66 4 0.4441 0.59861 35.186 2 Median 0.4441 0.59861 35.186 2 0 Median NaN NaN NaN 0 0 Median 10555000 8006700 2547900 10555000 8006700 2547900 0 0 0 12864 589 13206 46830;46831;46832;46833 70657;70658;70659;70660 70658 3 VLADPSDDTK DVAYRRGYFDEEMNRVLADPSDDTKGFFDP EEMNRVLADPSDDTKGFFDPNTHENLTYLQ R V L T K G 1 0 0 3 0 0 0 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 10 0 1059.5084 Q15149;D3DWL0;P58107;A0A087X1U6;A0A075B730 Q15149 2979 2988 PLEC;PLEC1;EPPK1 Plectin;Epiplakin no no 2 3.8554E-09 107.15 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12865 1507;373;1386 13207 46834 70661 70661 1 VLAEDEELYGDFEDLETGDVHK CFVTGKWEDDKDAAKVLAEDEELYGDFEDL LYGDFEDLETGDVHKGKSGPNTQNEDIEKE K V L H K G 1 0 0 4 0 0 5 2 1 0 3 1 0 1 0 0 1 0 1 2 0 0 22 0 2522.1337 Q14692 Q14692 772 793 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 8.798E-50 191.97 4 2 1.0363 1.3066 5.5605 6 Median 1.0591 1.3368 2.7197 4 0 Median 0.77867 1.2374 7.2727 2 0 Median 364170000 187100000 177070000 204770000 98916000 105860000 159390000 88181000 71212000 12866 1495 13208 46835;46836;46837;46838;46839;46840 70662;70663;70664;70665;70666;70667;70668;70669;70670;70671;70672;70673 70662 12 VLAFLSSVAGDALTR PYLVPKLTTPPVNTRVLAFLSSVAGDALTR VLAFLSSVAGDALTRHLGVILPAVMLALKE R V L T R H 3 1 0 1 0 0 0 1 0 0 3 0 0 1 0 2 1 0 0 2 0 0 15 0 1518.8406 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2093 2107 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.011261 83.314 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3316200 1143100 2173100 1143100 1143100 0 2173100 0 2173100 12867 1000 13209 46841;46842 70674;70675 70674 2 VLAFLVLSR KRMVIVWSTGEESLRVLAFLVLSRVCRHKK GEESLRVLAFLVLSRVCRHKKDTFLGPVLK R V L S R V 1 1 0 0 0 0 0 0 0 0 3 0 0 1 0 1 0 0 0 2 0 0 9 0 1016.6383 Q9Y3T9;B3KNC3;Q9H9J5 Q9Y3T9 311 319 NOC2L Nucleolar complex protein 2 homolog yes no 2 0.0036172 95.815 4 2 0.68005 0.9101 12.885 4 Median 0.71253 0.94265 5.0115 3 0 Median 0.56486 0.72765 NaN 1 0 Median 32364000 19990000 12374000 27410000 15918000 11492000 4954400 4072000 882420 12868 1820 13210 46843;46844;46845;46846;46847;46848 70676;70677;70678;70679;70680;70681;70682;70683 70678 8 VLAGETLSVNDPPDVLDR TIHLTSPVVREEMEKVLAGETLSVNDPPDV GETLSVNDPPDVLDRQKCLAALASLRHAKW K V L D R Q 1 1 1 3 0 0 1 1 0 0 3 0 0 0 2 1 1 0 0 3 0 0 18 0 1908.9793 F4ZW64;A8K590;F4ZW65;A0A024R7C7;F4ZW66;Q12906;Q59GP7;K7EKJ9;K7EQR9 F4ZW64 183 200 ILF3 Interleukin enhancer-binding factor 3 yes no 2 3.0886E-10 118.73 3 1.1174 1.5244 5.0462 3 Median 1.1174 1.5244 5.0462 3 0 Median NaN NaN NaN 0 0 Median 17693000 8197300 9495500 17693000 8197300 9495500 0 0 0 12869 175 13211 46849;46850;46851 70684;70685;70686;70687 70684 4 VLALELFEQITK LEQWIEKRRGEKLDKVLALELFEQITKGVD LDKVLALELFEQITKGVDYIHSKKLIHRDL K V L T K G 1 0 0 0 0 1 2 0 0 1 3 1 0 1 0 0 1 0 0 1 0 0 12 0 1402.8072 B7ZKK7;P19525;Q8IW76;Q05CP4 B7ZKK7 389 400 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 2 3.3123E-10 131.52 4 0.41471 0.53283 9.7557 4 Median 0.41471 0.53283 9.7557 4 0 Median NaN NaN NaN 0 0 Median 21838000 15140000 6697800 21838000 15140000 6697800 0 0 0 12870 923 13212 46852;46853;46854;46855 70688;70689;70690;70691;70692;70693;70694;70695;70696 70696 9 VLALPEPSPAAPTLR GLGKGVARLSAEAEKVLALPEPSPAAPTLR VLALPEPSPAAPTLRSELELTLGKLEQVRS K V L L R S 3 1 0 0 0 0 1 0 0 0 3 0 0 0 4 1 1 0 0 1 0 0 15 0 1530.877 Q15149 Q15149 1187 1201 PLEC Plectin yes yes 2 3.5014E-18 123.8 5 2 1.0155 1.4018 13.168 6 Median 0.92818 1.2428 12.291 4 0 Median 1.0723 1.5213 1.9568 2 0 Median 100470000 52075000 48393000 86077000 45465000 40612000 14391000 6610000 7781200 12871 1507 13213 46856;46857;46858;46859;46860;46861;46862 70697;70698;70699;70700;70701;70702;70703;70704;70705;70706;70707 70702 11 VLALPSHR EVEQVELPDGKKRRKVLALPSHRGPKIRLR DGKKRRKVLALPSHRGPKIRLRDKGKVKPV K V L H R G 1 1 0 0 0 0 0 0 1 0 2 0 0 0 1 1 0 0 0 1 0 0 8 0 891.52904 A0A024R753;Q9NW13 A0A024R753 670 677 RBM28 RNA-binding protein 28 yes no 2 0.032749 50.127 1 0.54319 0.69056 NaN 1 Median NaN NaN NaN 0 0 Median 0.54319 0.69056 NaN 1 0 Median 3970200 2433300 1536800 0 0 0 3970200 2433300 1536800 12872 169 13214 46863 70708 70708 1 VLALQAR ______________________________ ______________________________ K V L A R K 2 1 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 769.48102 Q96SB4;A8K8B2 Q96SB4 5 11 SRPK1 SRSF protein kinase 1 yes no 2 0.036563 56.51 1 0.8674 1.1494 NaN 1 Median 0.8674 1.1494 NaN 1 0 Median NaN NaN NaN 0 0 Median 6469500 3659300 2810200 6469500 3659300 2810200 0 0 0 12873 1699 13215 46864 70709 70709 1 VLALSVETDYTFPLAEK TVASVPHSIINGYKRVLALSVETDYTFPLA ALSVETDYTFPLAEKVKAFLADPSAFVAAA R V L E K V 2 0 0 1 0 0 2 0 0 0 3 1 0 1 1 1 2 0 1 2 0 0 17 0 1894.9928 Q53HW2;A8K4Z4;A0A024RBS2;P05388;F8VWS0;Q53HK9;F8VW21;F8VZS0;Q6NSF2;B4E3D5;Q3MHV2;F8W1K8 Q53HW2 248 264 RPLP0 60S acidic ribosomal protein P0 yes no 2 1.1734E-18 166.45 4 2 0.7822 1.0832 9.4962 6 Median 1.0152 1.2774 12.186 4 0 Linear 0.67367 1.0744 1.1073 2 0 Median 317660000 175600000 142060000 202650000 105500000 97155000 115010000 70105000 44902000 12874 281 13216 46865;46866;46867;46868;46869;46870 70710;70711;70712;70713;70714;70715;70716;70717;70718 70712 9 VLAPILPDNFSTPTGSR PRDSPAFPDSPWRERVLAPILPDNFSTPTG APILPDNFSTPTGSRTDSQSVRHSPIAPSS R V L S R T 1 1 1 1 0 0 0 1 0 1 2 0 0 1 3 2 2 0 0 1 0 0 17 0 1783.9468 Q9NQS7;B3KPD3 Q9NQS7 281 297 INCENP Inner centromere protein yes no 2 7.4054E-30 138.45 4 2 0.8016 1.2146 12.276 6 Median 0.92661 1.2655 15.143 4 0 Median 0.67813 1.1284 5.9546 2 0 Median 1572400000 888300000 684090000 764730000 398650000 366080000 807660000 489650000 318010000 12875 1752 13217 46871;46872;46873;46874;46875;46876 70719;70720;70721;70722;70723;70724;70725;70726;70727;70728 70726 10 VLAQNSGFDLQETLVK LGVQAFADALLIIPKVLAQNSGFDLQETLV LAQNSGFDLQETLVKIQAEHSESGQLVGVD K V L V K I 1 0 1 1 0 2 1 1 0 0 3 1 0 1 0 1 1 0 0 2 0 0 16 0 1760.9309 Q59ET3;B2R9K8;A0A024RDL1;P40227;A1JUI8;B4DPJ8;B4DN39 Q59ET3 448 463 CCT6A T-complex protein 1 subunit zeta yes no 2 2.8639E-13 145.31 4 0.41831 0.52773 4.3576 3 Plateau 0.41831 0.52773 4.3576 3 0 Plateau NaN NaN NaN 0 0 Median 17076000 11095000 5980600 17076000 11095000 5980600 0 0 0 12876 319 13218 46877;46878;46879;46880 70729;70730;70731;70732;70733 70729 5 VLAQQGEYSEAIPILR EHQPDNIKALFRKGKVLAQQGEYSEAIPIL LAQQGEYSEAIPILRAALKLEPSNKTIHAE K V L L R A 2 1 0 0 0 2 2 1 0 2 2 0 0 0 1 1 0 0 1 1 0 0 16 0 1785.9625 B2R8G6;A0A024R7P2;B7Z6M0;Q14318;U3KQI1;A0A0A0MTJ1 B2R8G6 259 274 FKBP8 Peptidyl-prolyl cis-trans isomerase FKBP8 yes no 2 1.8143E-29 151.55 4 0.38117 0.51019 89.369 3 Median 0.38117 0.51019 89.369 3 0 Median NaN NaN NaN 0 0 Median 41853000 28169000 13684000 41853000 28169000 13684000 0 0 0 12877 182 13219 46881;46882;46883;46884 70734;70735;70736;70737;70738;70739 70737 6 VLAQYYTVTDEHHR QAPDNEITIKKLRKKVLAQYYTVTDEHHRS KVLAQYYTVTDEHHRSEEELLVIFNKKISK K V L H R S 1 1 0 1 0 1 1 0 2 0 1 0 0 0 0 0 2 0 2 2 0 0 14 0 1730.8376 Q9NX58;A8K3Y5 Q9NX58 336 349 LYAR Cell growth-regulating nucleolar protein yes no 3 0.0050012 64.104 1 1.7703 2.4128 NaN 1 Median 1.7703 2.4128 NaN 1 0 Median NaN NaN NaN 0 0 Median 11207000 4233100 6973500 11207000 4233100 6973500 0 0 0 12878 1766 13220 46885 70740 70740 1 VLASLIIR DTALDMRGRCSAGQKVLASLIIRLALAETF RCSAGQKVLASLIIRLALAETFCLNCGIIA K V L I R L 1 1 0 0 0 0 0 0 0 2 2 0 0 0 0 1 0 0 0 1 0 0 8 0 883.58549 Q92878;H7C0V2 Q92878 1207 1214 RAD50 DNA repair protein RAD50 yes no 2 0.017596 60.76 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1708900 1708900 0 1708900 1708900 0 0 0 0 12879 1676 13221 46886;46887 70741;70742 70742 2 VLATQPGPGR GDEPLNFLDPKVAQRVLATQPGPGRGRKKD KVAQRVLATQPGPGRGRKKDHGFKVSADGR R V L G R G 1 1 0 0 0 1 0 2 0 0 1 0 0 0 2 0 1 0 0 1 0 0 10 0 994.55598 B3KMR5;Q5JTH9;B3KY97;B3KPQ2;A0A087X0G0 B3KMR5 1129 1138 RRP12 RRP12-like protein yes no 2 8.5146E-17 157.34 2 1 0.91883 1.2207 NaN 1 Median 0.91883 1.2207 NaN 1 0 Median NaN NaN NaN 0 0 Median 26431000 19047000 7383200 20564000 13181000 7383200 5866500 5866500 0 12880 756 13222 46888;46889;46890 70743;70744;70745;70746 70745 4 VLATTFDPYLGGR AYQVLVCAFNKGKLKVLATTFDPYLGGRNF LKVLATTFDPYLGGRNFDEALVDYFCDEFK K V L G R N 1 1 0 1 0 0 0 2 0 0 2 0 0 1 1 0 2 0 1 1 0 0 13 0 1408.7351 D6RJ96;B3KNM0;E9PDE8;B4DXT2;Q53ZP9;A0A140VKE7;O95757;B4DZR0 D6RJ96 181 193 HSPA4L Heat shock 70 kDa protein 4L yes no 2 0.0053235 54.608 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2796400 2796400 0 2796400 2796400 0 0 0 0 12881 513 13223 46891 70747;70748 70748 2 VLATVTK YSAAKSKVEKKKKEKVLATVTKPVGGDKNG VEKKKKEKVLATVTKPVGGDKNGGTRVVKL K V L T K P 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2 0 0 2 0 0 7 0 730.45889 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3;F8VZ45;U3KQR5;F8VZA3;F8VWR1;F8VU16 Q8TBK5 88 94 RPL6 60S ribosomal protein L6 yes no 2 0.010242 119.57 2 0.80526 1.0128 18.428 2 Median 0.80526 1.0128 18.428 2 0 Median NaN NaN NaN 0 0 Median 76971000 41817000 35154000 76971000 41817000 35154000 0 0 0 12882 277 13224 46892;46893 70749;70750 70750 2 VLATVTKPVGGDK YSAAKSKVEKKKKEKVLATVTKPVGGDKNG EKVLATVTKPVGGDKNGGTRVVKLRKMPRY K V L D K N 1 0 0 1 0 0 0 2 0 0 1 2 0 0 1 0 2 0 0 3 0 0 13 1 1283.7449 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3;F8VZ45;U3KQR5;F8VZA3;F8VWR1;F8VU16 Q8TBK5 88 100 RPL6 60S ribosomal protein L6 yes no 2;3 9.5432E-20 169.58 9 3 0.7523 0.92575 12.902 11 Median 0.77235 0.93701 3.4617 8 0 Median 0.44929 0.71103 3.681 3 0 Median 1744200000 1000300000 743950000 1660700000 941690000 719010000 83504000 58568000 24936000 12883 277 13225 46894;46895;46896;46897;46898;46899;46900;46901;46902;46903;46904;46905 70751;70752;70753;70754;70755;70756;70757;70758;70759;70760;70761;70762;70763;70764;70765;70766;70767;70768;70769;70770 70752 20 VLCLAVAVGHVK KVDEVKSTIKFQMKKVLCLAVAVGHVKMTD MKKVLCLAVAVGHVKMTDDELVYNIHLAVN K V L V K M 2 0 0 0 1 0 0 1 1 0 2 1 0 0 0 0 0 0 0 4 0 0 12 0 1264.7326 P62906;Q1JQ76;A0A024RCW3 P62906 162 173 RPL10A 60S ribosomal protein L10a;Ribosomal protein yes no 2;3 2.4407E-07 101.25 8 4 0.80337 1.0491 40.407 11 Median 0.82546 1.078 14.937 8 0 Median 0.34036 0.5369 12.982 3 0 Plateau 808740000 444240000 364490000 739000000 389100000 349900000 69739000 55145000 14594000 12884 1415 13226 46906;46907;46908;46909;46910;46911;46912;46913;46914;46915;46916;46917 70771;70772;70773;70774;70775;70776;70777;70778;70779;70780;70781;70782;70783;70784;70785;70786;70787;70788;70789;70790 70782 20 VLCLSQSEGR PLLHHWLQAGDILHRVLCLSQSEGRVLLCR DILHRVLCLSQSEGRVLLCRKPALVSTVEG R V L G R V 0 1 0 0 1 1 1 1 0 0 2 0 0 0 0 2 0 0 0 1 0 0 10 0 1147.5656 Q14690;B4DH82;B4DES7 Q14690 692 701 PDCD11 Protein RRP5 homolog yes no 2 0.0036979 95.358 3 2 1.0832 1.4493 20.459 3 Plateau 1.0888 1.4507 NaN 1 0 Median 0.70123 1.0205 3.5191 2 0 Median 70602000 35571000 35030000 43368000 18848000 24520000 27234000 16724000 10510000 12885 1494 13227 46918;46919;46920;46921;46922 70791;70792;70793;70794;70795;70796;70797 70797 7 VLDAIIQEK EEAKSSLAMNRSRGKVLDAIIQEKKSGRIP NRSRGKVLDAIIQEKKSGRIPGIYGRLGDL K V L E K K 1 0 0 1 0 1 1 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1027.5914 Q9NTJ3;E9PD53;B3KXX5;B3KVJ5 Q9NTJ3 599 607 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 7.871E-06 131.06 4 2 0.68017 0.95027 5.5806 6 Median 0.70561 0.92249 4.717 4 0 Median 0.62683 0.9946 0.55564 2 0 Median 467130000 274620000 192510000 392830000 229020000 163810000 74298000 45595000 28703000 12886 1760 13228 46923;46924;46925;46926;46927;46928 70798;70799;70800;70801;70802;70803;70804;70805;70806;70807;70808;70809;70810 70806 13 VLDDGELLVQQTK YIMNGIIKWGDPVTRVLDDGELLVQQTKNS TRVLDDGELLVQQTKNSDRTPLVSVLLEGP R V L T K N 0 0 0 2 0 2 1 1 0 0 3 1 0 0 0 0 1 0 0 2 0 0 13 0 1456.7773 B4DGR3;I3L0N3;B7Z5J7;P46459;B7Z9U2;B4DH19;B4DSK5;D3DXJ4;Q96D47 B4DGR3 475 487 NSF Vesicle-fusing ATPase yes no 2 0.014768 38.75 1 0.41154 0.52228 NaN 1 Median 0.41154 0.52228 NaN 1 0 Median NaN NaN NaN 0 0 Median 7035900 5554900 1481000 7035900 5554900 1481000 0 0 0 12887 805 13229 46929 70811 70811 1 VLDELTLAR NLRMSVEADINGLRRVLDELTLARADLEMQ INGLRRVLDELTLARADLEMQIESLKEELA R V L A R A 1 1 0 1 0 0 1 0 0 0 3 0 0 0 0 0 1 0 0 1 0 0 9 0 1028.5866 CON__P02533;P02533;A0A024R1X6;CON__A2A4G1;A8MT21;C9JTG5;CON__Q04695;Q04695;F5GWP8;CON__Q9QWL7;Q14666;K7EPJ9;CON__P08779;P08779;B4DWU0;B4E2J5 CON__P02533 224 232 KRT14;KRT15;KRT17;KRT16 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 16 no no 2 7.6009E-10 155 3 2 0.054943 0.088672 1.118 2 Median NaN NaN NaN 0 0 Median 0.054943 0.088672 1.118 2 0 Median 188730000 183070000 5655900 82084000 82084000 0 106650000 100990000 5655900 + 12888 949;958;965 13230 46930;46931;46932;46933;46934 70812;70813;70814;70815;70816;70817 70812 6 VLDELTLTK ALRQSVEADINGLRRVLDELTLTKADLEMQ INGLRRVLDELTLTKADLEMQIESLTEELA R V L T K A 0 0 0 1 0 0 1 0 0 0 3 1 0 0 0 0 2 0 0 1 0 0 9 0 1030.591 CON__P13645;P13645 CON__P13645 258 266 KRT10 Keratin, type I cytoskeletal 10 yes no 1;2 3.3205E-06 146.79 5 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 452470000 452470000 0 271330000 271330000 0 181140000 181140000 0 + 12889 960 13231 46935;46936;46937;46938;46939;46940;46941 70818;70819;70820;70821;70822;70823;70824;70825;70826;70827;70828 70818 11 VLDFEHFLPMLQTVAK LKVLGNPKSDEMNVKVLDFEHFLPMLQTVA LDFEHFLPMLQTVAKNKDQGTYEDYVEGLR K V L A K N 1 0 0 1 0 1 1 0 1 0 3 1 1 2 1 0 1 0 0 2 0 0 16 0 1886.9964 F8W1R7;J3KND3;G8JLA2;G3V1V0;B7Z6Z4;P60660;G3V1Y7;Q6IBG5;F8VPF3;F8VZU9;F8W180 F8W1R7 64 79 MYL6 Myosin light polypeptide 6 yes no 3 0.00022894 71.031 4 0.96524 1.2132 31.373 4 Median 0.96524 1.2132 31.373 4 0 Median NaN NaN NaN 0 0 Median 17270000 8157100 9112800 17270000 8157100 9112800 0 0 0 12890 915 13232;13233 46942;46943;46944;46945 70829;70830;70831;70832;70833;70834;70835 70835 316 7 VLDIIYQPQAIFR SLGKTLESQAVETEKVLDIIYQPQAIFRVR EKVLDIIYQPQAIFRVRAVTRCTSSLEGHS K V L F R V 1 1 0 1 0 2 0 0 0 3 1 0 0 1 1 0 0 0 1 1 0 0 13 0 1574.8821 B4E074;Q9NVX2;B4E303;A0A0A0MRH0;K7ERN7 B4E074 87 99 NLE1 Notchless protein homolog 1 yes no 2 1.0665E-05 133.75 5 1 0.6798 0.96042 25.09 3 Median 0.59621 0.83544 19.716 2 0 Median 0.8344 1.199 NaN 1 0 Median 29114000 19119000 9994700 18072000 14629000 3443400 11042000 4490700 6551300 12891 883 13234 46946;46947;46948;46949;46950;46951 70836;70837;70838;70839;70840;70841;70842;70843;70844;70845 70840 10 VLDILLEQYPALITGR AMTHITEGIQEDSLKVLDILLEQYPALITG LDILLEQYPALITGRSSILLKNFVELISHQ K V L G R S 1 1 0 1 0 1 1 1 0 2 4 0 0 0 1 0 1 0 1 1 0 0 16 0 1813.0349 A0A024R169;Q9NXF1;B7Z9D5 A0A024R169 163 178 TEX10 Testis-expressed sequence 10 protein yes no 2 0.0018516 97.86 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 630830 630830 0 630830 630830 0 0 0 0 12892 53 13235 46952;46953 70846;70847 70847 2 VLDLLDPASGDLVIR ALSVTMSYLEIYQEKVLDLLDPASGDLVIR VLDLLDPASGDLVIREDCRGNILIPGLSQK K V L I R E 1 1 0 3 0 0 0 1 0 1 4 0 0 0 1 1 0 0 0 2 0 0 15 0 1594.893 Q14807;A0A024R632;B7Z9T5;H3BRB3;H3BTH5 Q14807 184 198 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 4.2894E-15 142.97 4 0.79467 1.0767 9.1858 4 Median 0.79467 1.0767 9.1858 4 0 Median NaN NaN NaN 0 0 Median 78215000 44134000 34081000 78215000 44134000 34081000 0 0 0 12893 1497 13236 46954;46955;46956;46957 70848;70849;70850;70851;70852;70853;70854 70853 7 VLDLVEVLVTK KLQKEKALRRDFQIRVLDLVEVLVTKQPEN FQIRVLDLVEVLVTKQPENALVLELLEPLL R V L T K Q 0 0 0 1 0 0 1 0 0 0 3 1 0 0 0 0 1 0 0 4 0 0 11 0 1226.7486 Q9BQG0;I3L1L3 Q9BQG0 828 838 MYBBP1A Myb-binding protein 1A yes no 2 1.5404E-10 171.33 4 1 0.65072 0.80972 5.7504 4 Median 0.65072 0.80972 5.7504 4 0 Median NaN NaN NaN 0 0 Median 87749000 54884000 32866000 84563000 51697000 32866000 3186400 3186400 0 12894 1708 13237 46958;46959;46960;46961;46962 70855;70856;70857;70858;70859;70860;70861;70862;70863 70855 9 VLDNAIETEK SKMKALAVEGKRIGKVLDNAIETEKMIEKY KRIGKVLDNAIETEKMIEKYESLASDLLEW K V L E K M 1 0 1 1 0 0 2 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 10 0 1130.5819 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;F8W6C1 B2ZZ89 293 302 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 5.107E-05 114.97 4 0.84765 1.0664 10.459 4 Median 0.84765 1.0664 10.459 4 0 Median NaN NaN NaN 0 0 Median 70818000 37398000 33420000 70818000 37398000 33420000 0 0 0 12895 346 13238 46963;46964;46965;46966 70864;70865;70866;70867;70868 70867 5 VLDNYLTSPLPEEVDETSAEDEGVSQRK ALNDNLEKGLLKALKVLDNYLTSPLPEEVD VDETSAEDEGVSQRKFLDGNELTLADCNLL K V L R K F 1 1 1 3 0 1 5 1 0 0 3 1 0 0 2 3 2 0 1 3 0 0 28 1 3119.4782 Q5SRT3;Q53FB0;O00299 Q5SRT3 139 166 CLIC1 Chloride intracellular channel protein;Chloride intracellular channel protein 1 yes no 3 1.4963E-07 77.693 1 0.84291 1.1731 NaN 1 Median 0.84291 1.1731 NaN 1 0 Median NaN NaN NaN 0 0 Median 2359400 1723800 635550 2359400 1723800 635550 0 0 0 12896 1166 13239 46967 70869;70870 70870 2 VLDPASSDFTR DTQLVNSLLEKASEKVLDPASSDFTRLSVL ASEKVLDPASSDFTRLSVLDLVVALAPCAD K V L T R L 1 1 0 2 0 0 0 0 0 0 1 0 0 1 1 2 1 0 0 1 0 0 11 0 1206.5881 B3KMR5;Q5JTH9;B3KY97 B3KMR5 740 750 RRP12 RRP12-like protein yes no 2 2.5265E-06 116.3 3 2 0.8166 1.2153 10.609 5 Median 0.92875 1.2373 12.953 3 0 Median 0.76227 1.1378 9.3265 2 0 Median 90229000 50365000 39864000 59491000 33276000 26216000 30737000 17089000 13648000 12897 756 13240 46968;46969;46970;46971;46972 70871;70872;70873;70874;70875;70876;70877;70878;70879;70880 70873 10 VLDPTCTIK DRDLKHFRISKALDRVLDPTCTIKTPEITV SKALDRVLDPTCTIKTPEITVSIIKELNRR R V L I K T 0 0 0 1 1 0 0 0 0 1 1 1 0 0 1 0 2 0 0 1 0 0 9 0 1045.5478 Q8TED0;H0Y8P4 Q8TED0 380 388 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 0.011284 61.582 1 0.94232 1.1514 NaN 1 Median 0.94232 1.1514 NaN 1 0 Median NaN NaN NaN 0 0 Median 21491000 10578000 10913000 21491000 10578000 10913000 0 0 0 12898 1660 13241 46973 70881;70882 70882 2 VLDSFCEGLK DAILGNPKVKAHGKKVLDSFCEGLKQLDDL AHGKKVLDSFCEGLKQLDDLKGAFASLSEL K V L L K Q 0 0 0 1 1 0 1 1 0 0 2 1 0 1 0 1 0 0 0 1 0 0 10 0 1166.5642 CON__Q3SX09 CON__Q3SX09 122 131 yes yes 2 0.016987 94.85 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 + 12899 969 13242 46974 70883 70883 1 VLDSYGDDYR RITRRLQQERRFLMRVLDSYGDDYRASQFT RFLMRVLDSYGDDYRASQFTIVLEDEGSQG R V L Y R A 0 1 0 3 0 0 0 1 0 0 1 0 0 0 0 1 0 0 2 1 0 0 10 0 1201.5251 A0A024R4Q5;P0C1Z6;A0A0G2JP55;A8MTQ3 A0A024R4Q5 123 132 TFPT TCF3 fusion partner yes no 2 0.029036 49.418 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1693500 1693500 0 1693500 1693500 0 0 0 0 12900 125 13243 46975 70884 70884 1 VLDVNLMGTFNVIR NLKKGQTHTLEDFQRVLDVNLMGTFNVIRL RVLDVNLMGTFNVIRLVAGEMGQNEPDQGG R V L I R L 0 1 2 1 0 0 0 1 0 1 2 0 1 1 0 0 1 0 0 3 0 0 14 0 1589.8599 A0A0S2Z410;Q99714;Q5H928;A0A0S2Z434 A0A0S2Z410 117 130 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2 0.00034056 66.262 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4010600 0 4010600 0 0 0 4010600 0 4010600 12901 458 13244 46976 70885 70885 160 1 VLEAAAQAAR LLEMDARLHEDHLERVLEAAAQAARDVHTL DHLERVLEAAAQAARDVHTLLDRVVRQHVR R V L A R D 5 1 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 10 0 998.55089 E9PI41;Q9NPD3 E9PI41 236 245 EXOSC4 Exosome complex component RRP41 yes no 2 0.051135 64.42 2 0.66728 0.9089 33.207 2 Median 0.66728 0.9089 33.207 2 0 Median NaN NaN NaN 0 0 Median 22038000 13463000 8575200 22038000 13463000 8575200 0 0 0 12902 1033 13245 46977;46978 70886;70887 70886 1 VLEALLPLK ICFFVQQFTDMEHNRVLEALLPLKGLEERV DMEHNRVLEALLPLKGLEERVAAAVDLIIK R V L L K G 1 0 0 0 0 0 1 0 0 0 4 1 0 0 1 0 0 0 0 1 0 0 9 0 994.64267 A0A0U1RQF0;P49327 A0A0U1RQF0 2381 2389 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0056544 98.299 4 2 0.76754 0.96677 6.3823 4 Median 0.76754 0.96677 6.3823 4 0 Median NaN NaN NaN 0 0 Median 30282000 13968000 16314000 25676000 13968000 11708000 4605400 0 4605400 12903 486 13246 46979;46980;46981;46982;46983;46984 70888;70889;70890;70891;70892;70893 70888 5 VLEDEEGSKDIELSDDPYDCIR AVKAALFNTRIPRVRVLEDEEGSKDIELSD SKDIELSDDPYDCIRLSVENVPCIVTLCKI R V L I R L 0 1 0 5 1 0 4 1 0 2 2 1 0 0 1 2 0 0 1 1 0 0 22 1 2596.1487 B2RDZ9;A0A024R2P7;Q15024 B2RDZ9 170 191 EXOSC7 Exosome complex component RRP42 yes no 3 3.3626E-06 93.029 3 0.45773 0.61247 47.562 2 Median 0.45773 0.61247 47.562 2 0 Median NaN NaN NaN 0 0 Median 8478600 4133100 4345500 8478600 4133100 4345500 0 0 0 12904 91 13247 46985;46986;46987 70894;70895;70896;70897 70894 4 VLEEANQAINPK FFTPGNLKQARELIKVLEEANQAINPKLMQ LIKVLEEANQAINPKLMQLVDHRGGGGGGG K V L P K L 2 0 2 0 0 1 2 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 12 0 1324.6987 Q59F66;Q92841 Q59F66 538 549 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 6.0118E-10 135.43 4 1 0.67426 0.84681 51.544 4 Median 0.63849 0.80985 5.678 3 0 Median 1.5615 2.3167 NaN 1 0 Median 46872000 25050000 21822000 36076000 20929000 15147000 10796000 4120600 6675300 12905 1554 13248 46988;46989;46990;46991;46992 70898;70899;70900;70901;70902;70903 70901 6 VLEEVCASPQGPGALFVQSHLEDLK YLESKAHGVQKKAYRVLEEVCASPQGPGAL GPGALFVQSHLEDLKKTLLDSLRSTSSPAK R V L L K K 2 0 0 1 1 2 3 2 1 0 4 1 0 1 2 2 0 0 0 3 0 0 25 0 2722.3636 B3KMR5;Q5JTH9;B3KY97 B3KMR5 794 818 RRP12 RRP12-like protein yes no 3 0.00034378 56.335 2 1.0141 1.2983 11.112 2 Median 1.0141 1.2983 11.112 2 0 Median NaN NaN NaN 0 0 Median 15884000 6721300 9162300 15884000 6721300 9162300 0 0 0 12906 756 13249 46993;46994 70904;70905 70904 2 VLEEVCASPQGPGALFVQSHLEDLKK YLESKAHGVQKKAYRVLEEVCASPQGPGAL PGALFVQSHLEDLKKTLLDSLRSTSSPAKR R V L K K T 2 0 0 1 1 2 3 2 1 0 4 2 0 1 2 2 0 0 0 3 0 0 26 1 2850.4586 B3KMR5;Q5JTH9;B3KY97 B3KMR5 794 819 RRP12 RRP12-like protein yes no 4 0.00033309 55.718 4 0.87436 1.0751 4.6007 4 Median 0.87436 1.0751 4.6007 4 0 Median NaN NaN NaN 0 0 Median 61871000 32723000 29148000 61871000 32723000 29148000 0 0 0 12907 756 13250 46995;46996;46997;46998 70906;70907;70908;70909;70910 70907 5 VLEFLASSFEVSR IEVVTSSLPELYVEKVLEFLASSFEVSRHL EKVLEFLASSFEVSRHLEFYLLWTHKLLML K V L S R H 1 1 0 0 0 0 2 0 0 0 2 0 0 2 0 3 0 0 0 2 0 0 13 0 1482.7718 Q15269;A0A0B4J2E5;A0A096LPI6 Q15269 802 814 PWP2 Periodic tryptophan protein 2 homolog yes no 2 3.2275E-20 186.87 3 2 0.8759 1.1739 11.089 5 Median 0.89029 1.1898 4.1149 3 0 Plateau 0.80649 1.1624 21.399 2 0 Median 85658000 46642000 39016000 60993000 32137000 28856000 24665000 14505000 10160000 12908 1508 13251 46999;47000;47001;47002;47003 70911;70912;70913;70914;70915;70916;70917;70918;70919;70920;70921 70915 11 VLEFNCR GILYAGIMLTKNGPKVLEFNCRFGDPECQV MLTKNGPKVLEFNCRFGDPECQVILPLLKS K V L C R F 0 1 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 7 0 936.44874 Q3B7A7;Q59HH3;P22102;Q15374;F8WD69 Q3B7A7 286 292 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 0.01461 105.27 3 0.2157 0.29204 33.802 2 Median 0.2157 0.29204 33.802 2 0 Median NaN NaN NaN 0 0 Median 32996000 28163000 4833100 32996000 28163000 4833100 0 0 0 12909 1289 13252 47004;47005;47006 70922;70923;70924 70924 3 VLEGSELELAK RKHPSSPECLVSAQKVLEGSELELAKMTML SAQKVLEGSELELAKMTMLLLYHSTMSSKS K V L A K M 1 0 0 0 0 0 3 1 0 0 3 1 0 0 0 1 0 0 0 1 0 0 11 0 1186.6445 A0A024R5M9;A0A087WY61;A0A024R5G4;F5H4J1;Q3SYK8;F5H6Y5;F5H0Z7;F5H763;Q86XH4;G1UI36;F5H2F3;F5H3L6;F5GZW1;F5H1L0;A8K394;Q4LE64;Q14980 Q4LE64 87 97 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.00032398 123.86 4 3 0.66162 0.83464 27.849 5 Median 0.68726 0.86828 7.2251 4 0 Median 0.31662 0.47846 NaN 1 0 Median 75174000 52321000 22854000 48972000 29721000 19251000 26202000 22600000 3602600 12910 148;1499;590 13253 47007;47008;47009;47010;47011;47012;47013 70925;70926;70927;70928;70929;70930;70931;70932 70926 8 VLELNASDER AAARELFGPELFRLRVLELNASDERGIQVV LFRLRVLELNASDERGIQVVREKVKNFAQL R V L E R G 1 1 1 1 0 0 2 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1144.5724 P35249;C9JZI1;C9JXZ7;C9JTT7;C9J8M3 P35249 105 114 RFC4 Replication factor C subunit 4 yes no 2 0.00078969 85.731 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2107600 0 2107600 2107600 0 2107600 0 0 0 12911 1317 13254 47014 70933;70934 70934 2 VLELTAENER SRDKAKMRNLETQHKVLELTAENERLQKKV ETQHKVLELTAENERLQKKVEQLSRELSTL K V L E R L 1 1 1 0 0 0 3 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 10 0 1172.6037 P17676;Q99557;Q9BSC0 P17676 303 312 CEBPB CCAAT/enhancer-binding protein beta yes no 2 0.00017141 98.033 3 2 1.2952 1.8596 39.261 4 Median 0.94876 1.2756 13.219 2 0 Median 1.6419 2.4854 0.94133 2 0 Median 66276000 24090000 42185000 30790000 10971000 19818000 35486000 13119000 22367000 12912 1277 13255 47015;47016;47017;47018;47019 70935;70936;70937;70938;70939;70940;70941 70941 7 VLEPYPSK GEGVGPQEYTLLKLKVLEPYPSKLSGLKGK YTLLKLKVLEPYPSKLSGLKGKNIFLVAAT K V L S K L 0 0 0 0 0 0 1 0 0 0 1 1 0 0 2 1 0 0 1 1 0 0 8 0 931.50148 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3 B4E266 225 232 LARS Leucine--tRNA ligase, cytoplasmic yes no 2 0.022172 57.177 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2418600 2418600 0 2418600 2418600 0 0 0 0 12913 732 13256 47020 70942 70942 1 VLEQLTGQTPVFSK ICVGESGDRLTRAAKVLEQLTGQTPVFSKA KVLEQLTGQTPVFSKARYTVRSFGIRRNEK K V L S K A 0 0 0 0 0 2 1 1 0 0 2 1 0 1 1 1 2 0 0 2 0 0 14 0 1545.8403 Q5VVD0;P62913;Q5VVC8;Q08ES8;Q5VVC9 Q5VVD0 39 52 RPL11 60S ribosomal protein L11 yes no 2 6.4435E-82 234.87 6 3 0.7495 1.0154 17.647 7 Median 0.7509 1.0007 21.492 5 0 Median 0.66881 1.0542 0.9684 2 0 Median 2577000000 1480700000 1096200000 2031800000 1159000000 872800000 545150000 321720000 223430000 12914 1416 13257 47021;47022;47023;47024;47025;47026;47027;47028;47029 70943;70944;70945;70946;70947;70948;70949;70950;70951;70952;70953;70954;70955;70956;70957;70958;70959;70960;70961;70962;70963;70964;70965;70966;70967 70951 25 VLEQPVVVQSVGTDGR SALAQARLLYGNDAKVLEQPVVVQSVGTDG LEQPVVVQSVGTDGRVFHFLVFQLNTTDLD K V L G R V 0 1 0 1 0 2 1 2 0 0 1 0 0 0 1 1 1 0 0 5 0 0 16 0 1681.8999 H0Y4J2;Q6TGK8;A6NHR2;S4R369;Q9BZE1 H0Y4J2 120 135 MRPL37 39S ribosomal protein L37, mitochondrial yes no 2 2.8354E-05 97.86 3 0.41952 0.57704 NaN 1 Median 0.41952 0.57704 NaN 1 0 Median NaN NaN NaN 0 0 Median 7083600 5865200 1218500 7083600 5865200 1218500 0 0 0 12915 567 13258 47030;47031;47032 70968;70969;70970 70970 3 VLESVTVHNPENQSYLIAYK EKLVASLWGAERCLRVLESVTVHNPENQSY TVHNPENQSYLIAYKDSQLIVSSAKALQHC R V L Y K D 1 0 2 0 0 1 2 0 1 1 2 1 0 0 1 2 1 0 2 3 0 0 20 0 2303.1798 Q8WVX6;B2RTX8;Q7Z5K2 Q8WVX6 124 143 WAPAL Wings apart-like protein homolog yes no 3 0.036943 69.148 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1162300 1162300 0 1162300 1162300 0 0 0 0 12916 746 13259 47033 70971 70971 1 VLETAEDIQER ______________________________ SGVKVLETAEDIQERRQQVLDRYHRFKELS K V L E R R 1 1 0 1 0 1 3 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 11 0 1301.6463 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8;A0A0D9SFF6;A0A1B0GTB7 Q13813 8 18 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 6.9109E-09 152.97 2 0.98953 1.316 2.2944 2 Median 0.98953 1.316 2.2944 2 0 Median NaN NaN NaN 0 0 Median 39822000 19691000 20131000 39822000 19691000 20131000 0 0 0 12917 1476 13260 47034;47035 70972;70973;70974;70975 70972 4 VLETPQEIHTVSSEAVSLLEEVITPR LQMYYEGRFPCLEEKVLETPQEIHTVSSEA SSEAVSLLEEVITPRKDLPPLLLKLNERPA K V L P R K 1 1 0 0 0 1 5 0 1 2 3 0 0 0 2 3 3 0 0 4 0 0 26 0 2875.5179 Q9H0A0;A0A087WV29 Q9H0A0 663 688 NAT10 N-acetyltransferase 10 yes no 3 0.001866 40.626 3 0.87021 1.2109 79.377 3 Median 0.87021 1.2109 79.377 3 0 Median NaN NaN NaN 0 0 Median 464740000 272420000 192320000 464740000 272420000 192320000 0 0 0 12918 1730 13261 47036;47037;47038 70976;70977;70978 70977 3 VLEVQPEK TFQLYKSADHRTLDKVLEVQPEKLELIMDE DHRTLDKVLEVQPEKLELIMDEMKQILTPM K V L E K L 0 0 0 0 0 1 2 0 0 0 1 1 0 0 1 0 0 0 0 2 0 0 8 0 940.52295 Q15397 Q15397 294 301 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 2 0.0058595 87.323 1 1 0.94387 1.1894 NaN 1 Median 0.94387 1.1894 NaN 1 0 Median NaN NaN NaN 0 0 Median 17577000 10466000 7111500 14929000 7817700 7111500 2648000 2648000 0 12919 1511 13262 47039;47040 70979;70980;70981 70980 3 VLFDPFELDTSVTPGR ATTTEGLLIYSLDTRVLFDPFELDTSVTPG LFDPFELDTSVTPGRVREALRQQDFTRAIL R V L G R V 0 1 0 2 0 0 1 1 0 0 2 0 0 2 2 1 2 0 0 2 0 0 16 0 1791.9043 Q15269;A0A0B4J2E5 Q15269 734 749 PWP2 Periodic tryptophan protein 2 homolog yes no 2 2.2008E-29 176.99 6 0.70251 0.96117 2.1795 4 Median 0.70251 0.96117 2.1795 4 0 Median NaN NaN NaN 0 0 Median 212380000 116380000 96006000 212380000 116380000 96006000 0 0 0 12920 1508 13263 47041;47042;47043;47044;47045;47046 70982;70983;70984;70985;70986;70987;70988;70989;70990;70991;70992 70988 11 VLFEQAFSFHGK PNFTPFPDEWTVEDKVLFEQAFSFHGKTFH EDKVLFEQAFSFHGKTFHRIQQMLPDKSIA K V L G K T 1 0 0 0 0 1 1 1 1 0 1 1 0 3 0 1 0 0 0 1 0 0 12 0 1408.7139 Q9UKL0 Q9UKL0 201 212 RCOR1 REST corepressor 1 no no 3 0.0058403 69.261 1 2 0.67543 0.87998 NaN 1 Median 0.67543 0.87998 NaN 1 0 Median NaN NaN NaN 0 0 Median 9773000 7569500 2203600 4637200 2433700 2203600 5135800 5135800 0 12921 1788 13264 47047;47048;47049 70993;70994;70995 70993 3 VLFGPEAPK MSDLPVKVTHTETGKVLFGPEAPKASQLDA HTETGKVLFGPEAPKASQLDAWLEMNPGYE K V L P K A 1 0 0 0 0 0 1 1 0 0 1 1 0 1 2 0 0 0 0 1 0 0 9 0 956.53312 P51531;A0A0U1RQZ9;F6VDE0;B4DK35 P51531 605 613 SMARCA2 Probable global transcription activator SNF2L2 yes no 2 0.024288 49.418 1 0.9955 1.3886 NaN 1 Median NaN NaN NaN 0 0 Median 0.9955 1.3886 NaN 1 0 Median 5796400 2859100 2937300 0 0 0 5796400 2859100 2937300 12922 1362 13265 47050 70996 70996 1 VLFICTANVTDTIPEPLRDR NFLDHYLDVPVDLSKVLFICTANVTDTIPE TANVTDTIPEPLRDRMEMINVSGYVAQEKL K V L D R M 1 2 1 2 1 0 1 0 0 2 2 0 0 1 2 0 3 0 0 2 0 0 20 1 2329.21 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0 K7EJE8 503 522 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 3 5.9926E-05 50.831 2 0.33408 0.44008 NaN 1 Median 0.33408 0.44008 NaN 1 0 Median NaN NaN NaN 0 0 Median 7259900 3046500 4213400 7259900 3046500 4213400 0 0 0 12923 780 13266 47051;47052 70997;70998 70998 2 VLFLFEFDEQGR QNTENLKDEVYHILKVLFLFEFDEQGRELQ ILKVLFLFEFDEQGRELQKAFEDTLQLMER K V L G R E 0 1 0 1 0 1 2 1 0 0 2 0 0 3 0 0 0 0 0 1 0 0 12 0 1498.7456 Q4LE38;O95163;B4E3I9;Q8N516;F5H2T0;B3KXE7;Q68DI5;B3KNB2;B3KVS1;H0YDF3;B3KMT0 Q4LE38 1252 1263 IKBKAP variant protein;IKBKAP;DKFZp781H1425 Elongator complex protein 1 yes no 2 0.0096749 53.327 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 529980 529980 0 529980 529980 0 0 0 0 12924 1213 13267 47053 70999 70999 1 VLFLIPK LAKGEPPNSDMHPMRVLFLIPKNNPPTLVG NSDMHPMRVLFLIPKNNPPTLVGDFTKSFK R V L P K N 0 0 0 0 0 0 0 0 0 1 2 1 0 1 1 0 0 0 0 1 0 0 7 0 828.54731 Q9NWX4;Q8NBY1;B4E0Y9;Q9P289;Q499L9;Q96SR7;C9JDH9;C9J6L2;C9JCC0;C9J232;H7C279;Q5CZ67;B4E185;B4DMA5;B4DMR0;B3KRS6;A0A0S2Z4Y2;B4DVS7;H0Y630;B4DR80;Q96BA2;A0A024R4B2;Q6P0Y1;Q5U0E6;B4DT57;O00506;Q9Y6E0;Q5JV98;Q6FG81 Q9NWX4 104 110 STK26;MST4;STK25;DKFZp686J1430;STK24;HEL-S-95 Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 25;Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit yes no 2 0.041035 54.525 1 0.43575 0.56479 NaN 1 Median 0.43575 0.56479 NaN 1 0 Median NaN NaN NaN 0 0 Median 5771500 3971200 1800300 5771500 3971200 1800300 0 0 0 12925 886 13268 47054 71000 71000 1 VLFRPSDTANSSNQDALSSNTSLK LRNHPSFYVFNHRGRVLFRPSDTANSSNQD NSSNQDALSSNTSLKLRKLESLRR______ R V L L K L 2 1 3 2 0 1 0 0 0 0 3 1 0 1 1 6 2 0 0 1 0 0 24 1 2551.2514 Q8N4V1 Q8N4V1 99 122 MMGT1 Membrane magnesium transporter 1 yes yes 3 1.8412E-23 138.24 3 0.54612 0.74143 15.994 3 Median 0.54612 0.74143 15.994 3 0 Median NaN NaN NaN 0 0 Median 24329000 16490000 7838500 24329000 16490000 7838500 0 0 0 12926 1638 13269 47055;47056;47057 71001;71002;71003;71004;71005;71006 71001 6 VLFSAGHDGNVIVWDLAR EDEVFVLEPHPFDPRVLFSAGHDGNVIVWD SAGHDGNVIVWDLARGVKIRSYFNMIEGQG R V L A R G 2 1 1 2 0 0 0 2 1 1 2 0 0 1 0 1 0 1 0 3 0 0 18 0 1968.0217 Q8WWQ0 Q8WWQ0 481 498 PHIP PH-interacting protein yes yes 3 1.3505E-17 75.97 2 0.74571 1.1051 9.0674 2 Median NaN NaN NaN 0 0 Median 0.74571 1.1051 9.0674 2 0 Median 29309000 15258000 14051000 0 0 0 29309000 15258000 14051000 12927 1668 13270 47058;47059 71007;71008 71008 2 VLFTCFK SIPSMVDGLKPGQRKVLFTCFKRNDKREVK GLKPGQRKVLFTCFKRNDKREVKVAQLAGS K V L F K R 0 0 0 0 1 0 0 0 0 0 1 1 0 2 0 0 1 0 0 1 0 0 7 0 913.47316 P11388;Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80 P11388 729 735 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2 0.012141 114.59 4 2 0.8879 1.1639 26.042 5 Median 0.8913 1.1685 3.526 4 0 Median 0.41875 0.65014 NaN 1 0 Median 822080000 423650000 398420000 779900000 402140000 377770000 42173000 21517000 20656000 12928 1256;1437 13271 47060;47061;47062;47063;47064;47065 71009;71010;71011;71012;71013;71014;71015;71016;71017;71018 71011 10 VLFTCFKR SIPSMVDGLKPGQRKVLFTCFKRNDKREVK LKPGQRKVLFTCFKRNDKREVKVAQLAGSV K V L K R N 0 1 0 0 1 0 0 0 0 0 1 1 0 2 0 0 1 0 0 1 0 0 8 1 1069.5743 P11388;Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80 P11388 729 736 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 3 0.0099687 56.721 2 0.99198 1.3193 31.663 2 Median 0.99198 1.3193 31.663 2 0 Median NaN NaN NaN 0 0 Median 18193000 9785700 8407400 18193000 9785700 8407400 0 0 0 12929 1256;1437 13272 47066;47067 71019;71020;71021 71021 3 VLFTGVVDAR SLRRTKLNQESTAPKVLFTGVVDARGERAV STAPKVLFTGVVDARGERAVLALGGSLAGS K V L A R G 1 1 0 1 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 3 0 0 10 0 1075.6026 Q14676;B4DYH4 Q14676 1895 1904 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 2 0.0065876 67.993 2 0.82086 1.1813 5.936 2 Median NaN NaN NaN 0 0 Median 0.82086 1.1813 5.936 2 0 Median 15807000 8032900 7774400 0 0 0 15807000 8032900 7774400 12930 1491 13273 47068;47069 71022;71023;71024 71023 3 VLGENAIAVR PFAQSFDIYLTQILRVLGENAIAVRTKAMK TQILRVLGENAIAVRTKAMKCLSEVVAVDP R V L V R T 2 1 1 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 2 0 0 10 0 1040.5978 Q6IEH8;Q6KC79 Q6IEH8 1780 1789 NIPBL Nipped-B-like protein yes no 2 0.00048012 87.696 1 1 0.46798 0.63777 NaN 1 Median NaN NaN NaN 0 0 Median 0.46798 0.63777 NaN 1 0 Median 11277000 9521600 1755800 5661000 5661000 0 5616400 3860600 1755800 12931 1586 13274 47070;47071 71025;71026 71025 2 VLGGEVDALLEEYAQEK SFRLGVLLLKPENVKVLGGEVDALLEEYAQ GGEVDALLEEYAQEKVLARLIGEPDLVVSV K V L E K V 2 0 0 1 0 1 4 2 0 0 3 1 0 0 0 0 0 0 1 2 0 0 17 0 1861.9309 A0A0A0MSU3;Q9H9A7 A0A0A0MSU3 189 205 RMI1 RecQ-mediated genome instability protein 1 yes no 2 9.5537E-05 98.368 2 0.5415 0.69242 47.532 2 Median 0.5415 0.69242 47.532 2 0 Median NaN NaN NaN 0 0 Median 2879800 1514000 1365800 2879800 1514000 1365800 0 0 0 12932 400 13275 47072;47073 71027;71028;71029 71027 3 VLGGLGK IYAVRVDAVHADVYRVLGGLGKDAPSLEEV AVHADVYRVLGGLGKDAPSLEEVEGHVADG R V L G K D 0 0 0 0 0 0 0 3 0 0 2 1 0 0 0 0 0 0 0 1 0 0 7 0 642.40646 Q15003;B4DRG7;E9PHA2;A8K4T8;C9J470 Q15003 179 185 NCAPH Condensin complex subunit 2 yes no 2 0.041035 54.525 2 1 0.72198 0.90934 5.1187 3 Median 0.74129 0.92901 3.0264 2 0 Median 0.53235 0.85713 NaN 1 0 Median 140270000 82168000 58102000 104480000 59382000 45094000 35794000 22786000 13008000 12933 1500 13276 47074;47075;47076 71030;71031;71032 71030 3 VLGIAFSSAR EDDDFMDENQGKGIRVLGIAFSSARDHPVF GKGIRVLGIAFSSARDHPVFCALVNGEGEV R V L A R D 2 1 0 0 0 0 0 1 0 1 1 0 0 1 0 2 0 0 0 1 0 0 10 0 1019.5764 Q7KZ85 Q7KZ85 781 790 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.0036564 66.621 4 0.54711 0.76964 37.661 2 Median 0.54711 0.76964 37.661 2 0 Median NaN NaN NaN 0 0 Median 10744000 7519000 3225500 10744000 7519000 3225500 0 0 0 12934 1609 13277 47077;47078;47079;47080 71033;71034;71035;71036;71037 71034 5 VLGIQVDTDGSGR GRDRVGVGIRSSYIRVLGIQVDTDGSGRSF IRVLGIQVDTDGSGRSFAGAVSPQEEEEFR R V L G R S 0 1 0 2 0 1 0 3 0 1 1 0 0 0 0 1 1 0 0 2 0 0 13 0 1315.6732 Q53FG5;B1AHB0;A8K521;P33992;B1AHB1;B4DQ39;B4DVK5;B3KVF0 Q53FG5 296 308 MCM5 DNA helicase;DNA replication licensing factor MCM5 yes no 2 0.00017236 112.83 3 1 0.27873 0.38288 10.727 2 Median 0.27873 0.38288 10.727 2 0 Median NaN NaN NaN 0 0 Median 24004000 16010000 7993500 19339000 16010000 3328800 4664700 0 4664700 12935 612 13278 47081;47082;47083;47084 71038;71039;71040;71041 71038 4 VLGKPEPAAQPVPESLPGEPEILPQAPANAHLK ERLLRRTQTKRSVYRVLGKPEPAAQPVPES EPEILPQAPANAHLKDLDEEIFDDDDFYHQ R V L L K D 5 0 1 0 0 2 4 2 1 1 4 2 0 0 8 1 0 0 0 2 0 0 33 1 3393.8296 Q9NY61;A0A087WWS8 Q9NY61 419 451 AATF Protein AATF yes no 4 3.9929E-14 75.758 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 272180000 272180000 0 138030000 138030000 0 134150000 134150000 0 12936 1767 13279 47085;47086;47087;47088 71042;71043;71044;71045;71046 71046 5 VLGLNEDPLK HAQVVEELSNFKSQKVLGLNEDPLKWWSDR FKSQKVLGLNEDPLKWWSDRLALFPLLPKV K V L L K W 0 0 1 1 0 0 1 1 0 0 3 1 0 0 1 0 0 0 0 1 0 0 10 0 1096.6128 A0A024RBU4;O96006 A0A024RBU4 580 589 hCG_1981838;ZBED1 Zinc finger BED domain-containing protein 1 yes no 2 0.00042123 99.013 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14804000 14804000 0 14804000 14804000 0 0 0 0 12937 282 13280 47089;47090;47091 71047;71048;71049 71048 3 VLGLVLLR IKPKNAKQPEREEKRVLGLVLLRGENLVSM PEREEKRVLGLVLLRGENLVSMTVEGPPPK R V L L R G 0 1 0 0 0 0 0 1 0 0 4 0 0 0 0 0 0 0 0 2 0 0 8 0 881.60622 J3QLE5;Q6LBS1;Q66K91;Q5XPV6;B4DVS0;X5DP00;Q53HE7;Q9UIS4;Q15182;P63162;P14678 J3QLE5 66 73 SNRPN;SNRPB Small nuclear ribonucleoprotein-associated protein;Small nuclear ribonucleoprotein-associated protein N;Small nuclear ribonucleoprotein-associated proteins B and B yes no 2 0.014616 92.692 2 1 0.82622 1.0944 NaN 1 Median NaN NaN NaN 0 0 Median 0.82622 1.0944 NaN 1 0 Median 7001200 4823900 2177300 1590100 1590100 0 5411100 3233800 2177300 12938 863 13281 47092;47093;47094 71050;71051;71052 71051 3 VLGPAAYNVPLPK ______________________________ ______________________________ M V L P K K 2 0 1 0 0 0 0 1 0 0 2 1 0 0 3 0 0 0 1 2 0 0 13 0 1337.7707 B4DS66;C9J406 B4DS66 2 14 IMMT yes no 2 0.00064937 86.136 3 0.59765 0.77202 3.8641 2 Median 0.59765 0.77202 3.8641 2 0 Median NaN NaN NaN 0 0 Median 9653600 6439300 3214200 9653600 6439300 3214200 0 0 0 12939 854 13282 47095;47096;47097 71053;71054;71055 71055 3 VLGQLHGGPSSCSATGTNR EPGSSGSPIYSPEKRVLGQLHGGPSSCSAT LHGGPSSCSATGTNRSDQYGRVFTSWTGGG R V L N R S 1 1 1 0 1 1 0 4 1 0 2 0 0 0 1 3 2 0 0 1 0 0 19 0 1897.9065 CON__P15636 CON__P15636 410 428 yes yes 2;3 4.4448E-12 147.75 7 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 315210000 315210000 0 300890000 300890000 0 14312000 14312000 0 + 12940 962 13283 47098;47099;47100;47101;47102;47103;47104;47105 71056;71057;71058;71059;71060;71061;71062;71063;71064;71065 71058 10 VLGQVSCELVSPK GTDYGCCIVELGKTRVLGQVSCELVSPKLN TRVLGQVSCELVSPKLNRATEGILFFNLEL R V L P K L 0 0 0 0 1 1 1 1 0 0 2 1 0 0 1 2 0 0 0 3 0 0 13 0 1414.749 B4DXG8;D6RIY6;A5PLM5;Q06265;D6R905;D6RA17;D6RAP4 B4DXG8 55 67 EXOSC9 Exosome complex component RRP45 yes no 2 0.00083849 90.434 2 0.51499 0.65088 8.8046 2 Median 0.51499 0.65088 8.8046 2 0 Median NaN NaN NaN 0 0 Median 18613000 12152000 6461100 18613000 12152000 6461100 0 0 0 12941 559 13284 47106;47107 71066;71067 71067 2 VLGSEGEEEDEALSPAK ESDSPVKRPGRKAARVLGSEGEEEDEALSP GSEGEEEDEALSPAKGQKPALDCSQVSPPR R V L A K G 2 0 0 1 0 0 5 2 0 0 2 1 0 0 1 2 0 0 0 1 0 0 17 0 1758.816 M0R0Q7;Q59HG7;F5GZ28;B4DM52;P18858;B4E135;Q76GR4;M0QY71;M0R1G7 M0R0Q7 63 79 LIG1 DNA ligase;DNA ligase 1 yes no 2 0.00010936 110.92 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12942 830 13285 47108 71068 71068 1 VLGTAFDPFLGGK AFQVSACAFNKGKLKVLGTAFDPFLGGKNF LKVLGTAFDPFLGGKNFDEKLVEHFCAEFK K V L G K N 1 0 0 1 0 0 0 3 0 0 2 1 0 2 1 0 1 0 0 1 0 0 13 0 1320.7078 A0A024RDQ0;A0A024RDS1;Q92598;B4DF68;B4DZB4 A0A024RDQ0 222 234 HSPH1 Heat shock protein 105 kDa yes no 2 0.0068381 105.4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8328500 8328500 0 8328500 8328500 0 0 0 0 12943 320 13286 47109;47110 71069;71070 71070 2 VLGTEAVQDPTK MPPPEPKVRISNLMRVLGTEAVQDPTKVEA LMRVLGTEAVQDPTKVEAHVRAQMAKRQKA R V L T K V 1 0 0 1 0 1 1 1 0 0 1 1 0 0 1 0 2 0 0 2 0 0 12 0 1256.6612 B4DLS8;Q53GV6;B2R791;O43395;B4DM28 B4DLS8 470 481 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes no 2 0.0008647 67.726 1 0.63995 0.81392 NaN 1 Median 0.63995 0.81392 NaN 1 0 Median NaN NaN NaN 0 0 Median 5505300 3349800 2155500 5505300 3349800 2155500 0 0 0 12944 703 13287 47111 71071;71072 71072 2 VLGTEDLYDYIDK FHGHDNYDQLVRIAKVLGTEDLYDYIDKYN AKVLGTEDLYDYIDKYNIELDPRFNDILGR K V L D K Y 0 0 0 3 0 0 1 1 0 1 2 1 0 0 0 0 1 0 2 1 0 0 13 0 1542.7454 E7EU96;B5BUH5;B2R6D7;Q5U5J2;P68400;Q2I0Y7 E7EU96 248 260 CSNK2A1 Casein kinase II subunit alpha yes no 2 0.0081957 75.788 1 2 0.639 0.82866 NaN 1 Median 0.639 0.82866 NaN 1 0 Median NaN NaN NaN 0 0 Median 12583000 2652600 9929900 5002500 2652600 2349900 7580000 0 7580000 12945 697 13288 47112;47113;47114 71073;71074;71075 71073 3 VLGTPVETIELTEDRR VELTKAGVLARYGVRVLGTPVETIELTEDR LGTPVETIELTEDRRAFAARMAEIGEHVAP R V L R R A 0 2 0 1 0 0 3 1 0 1 2 0 0 0 1 0 3 0 0 2 0 0 16 1 1826.9738 Q53SY7;F8VPD4;P27708 Q53SY7 427 442 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 3 0.027616 25.866 2 4.8392 6.4937 NaN 1 Median NaN NaN NaN 0 0 Median 4.8392 6.4937 NaN 1 0 Median 8679500 1191800 7487800 0 0 0 8679500 1191800 7487800 12946 1060 13289 47115;47116 71076;71077 71077 2 VLGVPIIVQASQAEK DVSSVPLAIGLTGQRVLGVPIIVQASQAEK VLGVPIIVQASQAEKNRAAAMANNLQKGSA R V L E K N 2 0 0 0 0 2 1 1 0 2 1 1 0 0 1 1 0 0 0 3 0 0 15 0 1550.9032 B4DRA0;B4DLM0;B3KWX7;Q68DD9;B4E1M7;Q14498;H0Y4X3;B7Z4L7;Q6N037;E1P5S2;Q7Z3L0;G3XAC6;A0A0U1RQH7;Q5QP23 B4DRA0 196 210 DKFZp781C0423;RBM39;DKFZp686A11192;RNPC2;DKFZp781I1140 RNA-binding protein 39 yes no 2 2.8025E-10 100.72 4 2 0.50533 0.62856 48.006 6 Median 0.49332 0.61631 2.0522 4 0 Median 1.0077 1.5681 1.7096 2 0 Median 126920000 72837000 54083000 71464000 46369000 25095000 55457000 26468000 28988000 12947 786 13290 47117;47118;47119;47120;47121;47122 71078;71079;71080;71081;71082;71083;71084;71085;71086;71087;71088;71089 71084 12 VLHALFLFQEPR YQMVPPYEYQTAKSRVLHALFLFQEPRSIV KSRVLHALFLFQEPRSIVTSQKGSTNAAPQ R V L P R S 1 1 0 0 0 1 1 0 1 0 3 0 0 2 1 0 0 0 0 1 0 0 12 0 1468.8191 Q9UK61;A0A024R363 Q9UK61 489 500 FAM208A;C3orf63 Protein FAM208A yes no 3 0.00083798 102.05 2 2 0.34783 0.45985 60.007 2 Median 0.51128 0.70291 NaN 1 0 Median 0.23663 0.30085 NaN 1 0 Median 9090200 6849900 2240300 2929900 1792600 1137300 6160300 5057400 1103000 12948 1787 13291 47123;47124;47125;47126 71090;71091;71092;71093 71091 4 VLHALQEAAPEVVQPTTVQSSTIPSLLR LSSKGSFADLGLEPRVLHALQEAAPEVVQP QPTTVQSSTIPSLLRGRHVVCAAETGSGKT R V L L R G 3 1 0 0 0 3 2 0 1 1 4 0 0 0 3 3 3 0 0 4 0 0 28 0 2983.6342 Q9NUL7 Q9NUL7 137 164 DDX28 Probable ATP-dependent RNA helicase DDX28 yes yes 3 1.2401E-07 80.406 3 0.4368 0.59798 34.454 3 Plateau 0.4368 0.59798 34.454 3 0 Plateau NaN NaN NaN 0 0 Median 15399000 9347000 6052100 15399000 9347000 6052100 0 0 0 12949 1761 13292 47127;47128;47129 71094;71095;71096 71094 3 VLHNAQEVEK EAFKASRNLQDVVERVLHNAQEVEKEPGQR DVVERVLHNAQEVEKEPGQRRALSVQASLM R V L E K E 1 0 1 0 0 1 2 0 1 0 1 1 0 0 0 0 0 0 0 2 0 0 10 0 1165.6091 P49916;B7Z6I3;K7ERZ5 P49916 454 463 LIG3 DNA ligase 3;DNA ligase yes no 2 1.2792E-05 82.029 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12950 1356 13293 47130 71097 71097 1 VLIEGSINSVR LLLQPVTISRNEKEKVLIEGSINSVRVSIA EKEKVLIEGSINSVRVSIAVKQADEIEKIL K V L V R V 0 1 1 0 0 0 1 1 0 2 1 0 0 0 0 2 0 0 0 2 0 0 11 0 1185.6717 F8WDD7;F8WCF6;A0A0A6YYG9;P59998;Q9H7Z5;H7C0A3 F8WDD7 61 71 ARPC4;ARPC4-TTLL3 Actin-related protein 2/3 complex subunit 4 yes no 2 0.00090023 106.88 3 1.5202 2.0162 0.5335 3 Median 1.5202 2.0162 0.5335 3 0 Median NaN NaN NaN 0 0 Median 46045000 16556000 29489000 46045000 16556000 29489000 0 0 0 12951 407 13294 47131;47132;47133 71098;71099;71100 71100 2 VLIFSQMTK LLQKMLKNLKEGGHRVLIFSQMTKMLDLLE KEGGHRVLIFSQMTKMLDLLEDFLEHEGYK R V L T K M 0 0 0 0 0 1 0 0 0 1 1 1 1 1 0 1 1 0 0 1 0 0 9 0 1065.5893 B3KY63;F5GWX5;A0A0C4DGG9;Q14839;Q8TDI0;K7EMY3;B3KRD4;Q6ZSZ4;F2Z2R5;Q12873;B4DLC6;B4DKV1 B3KY63 1043 1051 CHD4;CHD5;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 no no 2 0.016212 45.68 2 1.0142 1.5256 2.2711 2 Median NaN NaN NaN 0 0 Median 1.0142 1.5256 2.2711 2 0 Median 27892000 13099000 14792000 0 0 0 27892000 13099000 14792000 12952 428;1458 13295 47134;47135 71101;71102 71101 148 2 VLIGENEK SKKQGKQEAADAALRVLIGENEKAERMGFT AADAALRVLIGENEKAERMGFTEVTPVTGA R V L E K A 0 0 1 0 0 0 2 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 900.49165 Q59EC0;D3DV75;H0YCK3;A0A024DAK3;P55265;B7Z8Y3 Q59EC0 809 816 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.036271 47.082 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8128000 0 8128000 0 0 0 8128000 0 8128000 12953 1552 13296 47136;47137 71103;71104 71103 2 VLIGGDETPEGQR LAEGTAIKDLKNPDRVLIGGDETPEGQRAV DRVLIGGDETPEGQRAVQALCAVYEHWVPR R V L Q R A 0 1 0 1 0 1 2 3 0 1 1 0 0 0 1 0 1 0 0 1 0 0 13 0 1369.6838 O60701;Q9NQ81 O60701 178 190 UGDH;GDH UDP-glucose 6-dehydrogenase yes no 2 0.0018298 66.595 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5364100 3370400 1993700 3370400 3370400 0 1993700 0 1993700 12954 1192 13297 47138;47139;47140 71105;71106;71107 71105 3 VLIIGSGGR ______________________________ ______________________________ R V L G R E 0 1 0 0 0 0 0 3 0 2 1 0 0 0 0 1 0 0 0 1 0 0 9 0 870.5287 Q3B7A7;Q59HH3;P22102;Q15374;F8WD69;C9JBJ1;C9JTV6;C9JZG2;C9JKQ7 Q3B7A7 5 13 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 0.00033169 133.6 2 0.21321 0.2865 NaN 1 Median 0.21321 0.2865 NaN 1 0 Median NaN NaN NaN 0 0 Median 22502000 19180000 3322000 22502000 19180000 3322000 0 0 0 12955 1289 13298 47141;47142 71108;71109 71108 2 VLIQVGYEPLPPTIGR GSGLTILSQPLMYVKVLIQVGYEPLPPTIG LIQVGYEPLPPTIGRNIFGRQVCQLPGLFS K V L G R N 0 1 0 0 0 1 1 2 0 2 2 0 0 0 3 0 1 0 1 2 0 0 16 0 1750.9982 Q9Y6C9;Q53G34;E9PIE4 Q9Y6C9 26 41 MTCH2 Mitochondrial carrier homolog 2 yes no 2 8.6527E-07 124.42 4 3 0.41833 0.55945 89.847 3 Median 0.40678 0.541 4.7434 2 0 Median 1.8349 2.562 NaN 1 0 Median 43180000 22533000 20647000 30852000 21139000 9713700 12328000 1394000 10934000 12956 1833 13299 47143;47144;47145;47146;47147;47148;47149 71110;71111;71112;71113;71114;71115;71116;71117 71112 8 VLISDSLDPCCR ______________________________ LRKVLISDSLDPCCRKILQDGGLQVVEKQN K V L C R K 0 1 0 2 2 0 0 0 0 1 2 0 0 0 1 2 0 0 0 1 0 0 12 0 1433.6643 O43175;V9HW79 O43175 9 20 PHGDH;HEL-S-113 D-3-phosphoglycerate dehydrogenase yes no 2 0.0012523 98.048 4 0.73372 1.023 15.623 3 Median 0.73372 1.023 15.623 3 0 Median NaN NaN NaN 0 0 Median 19296000 10918000 8377400 19296000 10918000 8377400 0 0 0 12957 1182 13300 47150;47151;47152;47153 71118;71119;71120;71121;71122;71123 71123 6 VLISDSLDPCCRK ______________________________ RKVLISDSLDPCCRKILQDGGLQVVEKQNL K V L R K I 0 1 0 2 2 0 0 0 0 1 2 1 0 0 1 2 0 0 0 1 0 0 13 1 1561.7592 O43175;V9HW79 O43175 9 21 PHGDH;HEL-S-113 D-3-phosphoglycerate dehydrogenase yes no 3 0.011235 26.541 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2416400 2416400 0 2416400 2416400 0 0 0 0 12958 1182 13301 47154 71124 71124 1 VLISSLQDCLHGIESK SLIKQSKVSADDRCKVLISSLQDCLHGIES LISSLQDCLHGIESKSYGSGSRRERSRERD K V L S K S 0 0 0 1 1 1 1 1 1 2 3 1 0 0 0 3 0 0 0 1 0 0 16 0 1797.9295 F8WJN3;Q16630;B4DSU9 F8WJN3 395 410 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 3 0.0050105 41.871 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3135700 3135700 0 3135700 3135700 0 0 0 0 12959 1075 13302 47155 71125 71125 1 VLITTDLLAR ERDVIMREFRSGSSRVLITTDLLARGIDVQ SGSSRVLITTDLLARGIDVQQVSLVINYDL R V L A R G 1 1 0 1 0 0 0 0 0 1 3 0 0 0 0 0 2 0 0 1 0 0 10 0 1113.6758 A8K7F6;P60842;B4DNH2;E7EQG2;Q14240;Q9NZE6;Q96B07 A8K7F6 325 334 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 2 0.00039443 99.802 3 2 0.32389 0.45044 128.82 5 Median 0.31882 0.43717 3.3588 3 0 Median 2.8907 4.5728 9.3063 2 0 Median 304480000 197990000 106490000 235130000 180870000 54252000 69352000 17113000 52239000 12960 634 13303 47156;47157;47158;47159;47160 71126;71127;71128;71129;71130;71131;71132;71133;71134;71135;71136 71133 11 VLITTLITAGR GEYVFPAKKKLQEYRVLITTLITAGRLVSA QEYRVLITTLITAGRLVSAQFPIDHFTHIF R V L G R L 1 1 0 0 0 0 0 1 0 2 2 0 0 0 0 0 3 0 0 1 0 0 11 0 1156.718 B7Z700;Q5JR04;Q9HCE1;B3KQ43 B7Z700 556 566 MOV10 Putative helicase MOV-10 yes no 2 0.0042426 94.409 3 0.89339 1.2297 20.089 3 Median 0.89339 1.2297 20.089 3 0 Median NaN NaN NaN 0 0 Median 12743000 6649600 6093700 12743000 6649600 6093700 0 0 0 12961 916 13304 47161;47162;47163 71137;71138;71139 71137 3 VLKQVHPDTGISSK RKRSRKESYSVYVYKVLKQVHPDTGISSKA KVLKQVHPDTGISSKAMGIMNSFVNDIFER K V L S K A 0 0 0 1 0 1 0 1 1 1 1 2 0 0 1 2 1 0 0 2 0 0 14 1 1507.8358 B2R4S9;A0A024RCL8;A0A024RCJ9;A0A024QZZ7;I6L9F7;U3KQK0;B4DR52;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;O60814;Q0D2M2;A8K9J7;P57053;A0A024RCJ2;Q16778;P33778;P23527;P06899;Q8N257 B2R4S9 45 58 HIST1H2BI;HIST1H2BK;HIST1H2BN;HIST1H2BD;HIST1H2BM;HIST1H2BL;HIST1H2BH;HIST2H2BF;HIST1H2BC;H2BFS;HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B no no 2;3 7.1228E-19 153.74 4 4 0.6459 0.99738 10.323 7 Median 0.67799 0.84096 12.536 3 0 Median 0.63174 1.005 4.6427 4 0 Median 226270000 137570000 88698000 26392000 15733000 10658000 199880000 121840000 78040000 12962 25;295 13305 47164;47165;47166;47167;47168;47169;47170;47171 71140;71141;71142;71143;71144;71145;71146;71147;71148;71149;71150;71151;71152 71143 13 VLLALHDR KPIPGDLYRACLYERVLLALHDRAPQLKIS RACLYERVLLALHDRAPQLKISDDRLTVVG R V L D R A 1 1 0 1 0 0 0 0 1 0 3 0 0 0 0 0 0 0 0 1 0 0 8 0 935.55525 A8K6T5;Q9UBL3;F5H8F7;B4DPT1 A8K6T5 381 388 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 3 0.012996 69.825 2 1 0.74508 1.0124 10.007 3 Plateau 0.67228 0.91609 14.133 2 0 Median 0.70887 0.90791 NaN 1 0 Median 21926000 12529000 9397400 17029000 9827800 7201200 4897300 2701100 2196200 12963 627 13306 47172;47173;47174 71153;71154;71155 71153 3 VLLATLSIPITPER RKNLTQDEMQRMSTRVLLATLSIPITPERT RVLLATLSIPITPERTDIARLLDMDGIIVE R V L E R T 1 1 0 0 0 0 1 0 0 2 3 0 0 0 2 1 2 0 0 1 0 0 14 0 1521.913 Q05BS0;Q6P1R0;Q3B770;Q7Z5T5;Q24JU4;J9R021;Q14152 Q05BS0 322 335 EIF3A;eIF3a Eukaryotic translation initiation factor 3 subunit A yes no 2 0.0095935 54.471 1 0.751 1.0231 NaN 1 Median 0.751 1.0231 NaN 1 0 Median NaN NaN NaN 0 0 Median 2472700 1155400 1317300 2472700 1155400 1317300 0 0 0 12964 1148 13307 47175 71156 71156 0 VLLCDPEAK NPEKKYHIGDEVKCRVLLCDPEAKKLMMTL DEVKCRVLLCDPEAKKLMMTLKKTLIESKL R V L A K K 1 0 0 1 1 0 1 0 0 0 2 1 0 0 1 0 0 0 0 1 0 0 9 0 1043.5321 Q14690;B4DH82;B4DES7 Q14690 507 515 PDCD11 Protein RRP5 homolog yes no 2 0.011923 71.877 3 1 0.98362 1.2303 24.152 4 Median 1.0066 1.2822 5.2476 3 0 Median 0.52856 0.77923 NaN 1 0 Median 84619000 41663000 42956000 77283000 37253000 40030000 7335500 4409100 2926300 12965 1494 13308 47176;47177;47178;47179 71157;71158;71159;71160 71158 4 VLLDAPCSGTGVISK YDGRQFPKVVGGFDRVLLDAPCSGTGVISK VLLDAPCSGTGVISKDPAVKTNKDEKDILR R V L S K D 1 0 0 1 1 0 0 2 0 1 2 1 0 0 1 2 1 0 0 2 0 0 15 0 1515.7967 P46087 P46087 457 471 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 4.1657E-10 140.91 4 2 0.72447 0.92741 23.498 6 Median 0.73647 0.95305 2.9521 4 0 Median 0.37891 0.60491 5.5069 2 0 Median 350980000 218190000 132780000 266610000 158980000 107630000 84361000 59211000 25150000 12966 1343 13309 47180;47181;47182;47183;47184;47185 71161;71162;71163;71164;71165;71166;71167;71168;71169 71167 9 VLLDIFTGVR GEKRKAADETLCQTKVLLDIFTGVRLYLPP LCQTKVLLDIFTGVRLYLPPSTPDFSRLRR K V L V R L 0 1 0 1 0 0 0 1 0 1 2 0 0 1 0 0 1 0 0 2 0 0 10 0 1131.6652 P49916;B7Z6I3 P49916 933 942 LIG3 DNA ligase 3;DNA ligase yes no 2 9.8483E-06 131.22 4 1 0.70225 0.96003 4.9563 5 Median 0.71204 0.97466 5.7141 4 0 Median 0.70225 0.96003 NaN 1 0 Median 27133000 14820000 12313000 21436000 11599000 9837900 5696700 3221400 2475300 12967 1356 13310 47186;47187;47188;47189;47190 71170;71171;71172;71173;71174;71175;71176;71177;71178;71179 71175 10 VLLDLSAFLK NGVALRPWDGNSDDRVLLDLSAFLKTIALN NSDDRVLLDLSAFLKTIALNGVEDVRTVLE R V L L K T 1 0 0 1 0 0 0 0 0 0 4 1 0 1 0 1 0 0 0 1 0 0 10 0 1117.6747 Q0VAB1;A0A024R0M6;Q3ZCQ8;M0R0C3;M0R2F8;M0R003 Q0VAB1 378 387 TIMM50 Mitochondrial import inner membrane translocase subunit TIM50 yes no 2 0.0014872 76.827 1 0.47135 0.58926 NaN 1 Median 0.47135 0.58926 NaN 1 0 Median NaN NaN NaN 0 0 Median 2297500 1519700 777810 2297500 1519700 777810 0 0 0 12968 40 13311 47191 71180 71180 1 VLLDNVENK TLDSFMQHDVQELCRVLLDNVENKMKGTCV VQELCRVLLDNVENKMKGTCVEGTIPKLFR R V L N K M 0 0 2 1 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 2 0 0 9 0 1042.5659 Q6U8A4;Q93009;B7ZAX6;B7Z855;H3BND8;B7Z7T5;F5H2X1;B7Z842 Q6U8A4 312 320 USP7 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 7 yes no 2 0.007264 69.598 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2893600 0 2893600 2893600 0 2893600 0 0 0 12969 1600 13312 47192 71181 71181 1 VLLESEQFLTELTR ______________________________ MVLLESEQFLTELTRLFQKCRTSGSVYITL M V L T R L 0 1 0 0 0 1 3 0 0 0 4 0 0 1 0 1 2 0 0 1 0 0 14 0 1676.8985 P37108;H0YLA2 P37108 2 15 SRP14 Signal recognition particle 14 kDa protein yes no 2 3.4349E-33 202 4 1 0.99759 1.3357 23.368 5 Median 1.0233 1.3823 6.162 4 0 Median 0.55643 0.84081 NaN 1 0 Median 79057000 40655000 38402000 61560000 31033000 30527000 17497000 9621400 7875400 12970 1326 13313 47193;47194;47195;47196;47197 71182;71183;71184;71185;71186;71187;71188;71189;71190 71185 9 VLLFSLPHPEALLAQQPPDAVK LPRLGLLALACSDGKVLLFSLPHPEALLAQ HPEALLAQQPPDAVKPAIYKVQCVATLQVG K V L V K P 3 0 0 1 0 2 1 0 1 0 5 1 0 1 4 1 0 0 0 2 0 0 22 0 2382.3311 Q8WUA4;Q53QN0;A0A087WZD8 Q8WUA4 508 529 GTF3C2 General transcription factor 3C polypeptide 2 yes no 3 9.1351E-09 100.41 5 0.57672 0.72816 27.113 3 Plateau 0.57672 0.72816 27.113 3 0 Plateau NaN NaN NaN 0 0 Median 31041000 19470000 11571000 31041000 19470000 11571000 0 0 0 12971 1663 13314 47198;47199;47200;47201;47202 71191;71192;71193;71194;71195;71196;71197 71194 7 VLLGETGK RAYQKQPTIFQNKKRVLLGETGKEKLPRYY IFQNKKRVLLGETGKEKLPRYYKNIGLGFK R V L G K E 0 0 0 0 0 0 1 2 0 0 2 1 0 0 0 0 1 0 0 1 0 0 8 0 815.47527 P62280;M0QZC5;M0R1H6 P62280 23 30 RPS11 40S ribosomal protein S11 yes no 2 0.0031609 104.21 1 2 0.92883 1.2283 64.733 3 Plateau 0.92932 1.2283 NaN 1 0 Median 0.25182 0.40051 2.8611 2 0 Median 366930000 228650000 138280000 212880000 105700000 107180000 154050000 122950000 31099000 12972 1404 13315 47203;47204;47205 71198;71199;71200;71201;71202 71198 5 VLLGVGDPK LRLLLETHLPSKKKKVLLGVGDPKIGAAIQ PSKKKKVLLGVGDPKIGAAIQEELGYNCQT K V L P K I 0 0 0 1 0 0 0 2 0 0 2 1 0 0 1 0 0 0 0 2 0 0 9 0 896.53312 A8K9K6;O00567;A0PJ92;Q5JXT2 A8K9K6 91 99 NOP56 Nucleolar protein 56 yes no 2 0.001769 110.31 2 0.89714 1.1682 37.741 2 Median 0.89714 1.1682 37.741 2 0 Median NaN NaN NaN 0 0 Median 115860000 63585000 52279000 115860000 63585000 52279000 0 0 0 12973 647 13316 47206;47207 71203;71204;71205 71203 3 VLLLAGR YLKALDTRMAAESRRVLLLAGRLAAQSLDT RMAAESRRVLLLAGRLAAQSLDTSGLRHVQ R V L G R L 1 1 0 0 0 0 0 1 0 0 3 0 0 0 0 0 0 0 0 1 0 0 7 0 740.49086 P07199 P07199 292 298 CENPB Major centromere autoantigen B yes yes 2 0.013513 98.513 3 0.90338 1.2141 NaN 1 Median 0.90338 1.2141 NaN 1 0 Median NaN NaN NaN 0 0 Median 18858000 11572000 7286000 18858000 11572000 7286000 0 0 0 12974 1239 13317 47208;47209;47210 71206;71207;71208 71208 3 VLLPAIK LTSLKKTLATTLAPRVLLPAIKKTYKQIEK LATTLAPRVLLPAIKKTYKQIEKNWKNHMG R V L I K K 1 0 0 0 0 0 0 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 7 0 752.51601 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8;Q8N7L7;Q96ES5 B2RWN5 1821 1827 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.027093 66.994 2 0.80175 1.0035 6.7284 2 Median 0.80175 1.0035 6.7284 2 0 Median NaN NaN NaN 0 0 Median 33475000 16466000 17010000 33475000 16466000 17010000 0 0 0 12975 748 13318 47211;47212 71209;71210;71211;71212 71212 4 VLLPFTR AAGPSAAAAKLNIPKVLLPFTRATRVNFTL AAKLNIPKVLLPFTRATRVNFTLEASEGCY K V L T R A 0 1 0 0 0 0 0 0 0 0 2 0 0 1 1 0 1 0 0 1 0 0 7 0 844.51707 Q8TEM1 Q8TEM1 33 39 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.018237 69.383 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 12976 1661 13319 47213 71213 71213 1 VLLPTPPCGALQPGFPLQHDGERDPFTCPGFASQDK RPATVGDSSARPARRVLLPTPPCGALQPGF ERDPFTCPGFASQDKALGSAQYEDPRNLHS R V L D K A 2 1 0 3 2 3 1 4 1 0 4 1 0 3 7 1 2 0 0 1 0 0 36 1 3948.8927 Q9BTC0 Q9BTC0 1658 1693 DIDO1 Death-inducer obliterator 1 yes yes 4 0.0032551 25.222 2 0.99386 1.2852 2.8235 2 Median 0.99386 1.2852 2.8235 2 0 Median NaN NaN NaN 0 0 Median 23620000 13431000 10189000 23620000 13431000 10189000 0 0 0 12977 1713 13320 47214;47215 71214;71215 71214 2 VLLQASQDENFGNTTPR AEVTRTARKQSAQKRVLLQASQDENFGNTT LQASQDENFGNTTPRNQVIPRTPSSFRQPF R V L P R N 1 1 2 1 0 2 1 1 0 0 2 0 0 1 1 1 2 0 0 1 0 0 17 0 1888.9279 P57740;G3V1T4 P57740 32 48 NUP107 Nuclear pore complex protein Nup107 yes no 2 0.0013287 42.3 1 1.2262 1.5814 NaN 1 Median NaN NaN NaN 0 0 Median 1.2262 1.5814 NaN 1 0 Median 3569800 1759500 1810300 0 0 0 3569800 1759500 1810300 12978 1384 13321 47216 71216;71217;71218 71217 3 VLLQEEGTR EKAIKEKEYEIERLRVLLQEEGTRKREYEN EIERLRVLLQEEGTRKREYENELAKVRNHY R V L T R K 0 1 0 0 0 1 2 1 0 0 2 0 0 0 0 0 1 0 0 1 0 0 9 0 1043.5611 P15924;Q4LE79;B4E2A0 P15924 1176 1184 DSP;DSP variant protein Desmoplakin yes no 2 0.011646 89.355 1 0.31043 0.43816 NaN 1 Median 0.31043 0.43816 NaN 1 0 Median NaN NaN NaN 0 0 Median 4121400 2651800 1469600 4121400 2651800 1469600 0 0 0 12979 1270 13322 47217 71219 71219 1 VLLSALER LLSEEVELYGETKAKVLLSALERLKHRPDG YGETKAKVLLSALERLKHRPDGKYVVVTGI K V L E R L 1 1 0 0 0 0 1 0 0 0 3 0 0 0 0 1 0 0 0 1 0 0 8 0 899.54402 A0A024R652;F5H2F4;B7Z809;P11586 A0A024R652 355 362 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.010537 65.252 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1599200 0 1599200 0 0 0 1599200 0 1599200 12980 154 13323 47218;47219 71220;71221 71220 2 VLLVGADNFTLLGK NELDLACGERIRLEKVLLVGADNFTLLGKP KVLLVGADNFTLLGKPLLGKDLVRVEATVI K V L G K P 1 0 1 1 0 0 0 2 0 0 4 1 0 1 0 0 1 0 0 2 0 0 14 0 1458.8446 A0A024R5G7;F5H7V8;H3BUY0;B4DXI4;Q7Z2W9 A0A024R5G7 48 61 MRPL21 39S ribosomal protein L21, mitochondrial yes no 2 0.00078051 106.62 1 0.35588 0.46681 NaN 1 Median 0.35588 0.46681 NaN 1 0 Median NaN NaN NaN 0 0 Median 1946000 1311100 634930 1946000 1311100 634930 0 0 0 12981 142 13324 47220 71222 71222 0 VLLYLLSPR ISSLPSIVNDKYGRKVLLYLLSPRDPAHTV DKYGRKVLLYLLSPRDPAHTVREIIEVLQK K V L P R D 0 1 0 0 0 0 0 0 0 0 4 0 0 0 1 1 0 0 1 1 0 0 9 0 1072.6645 Q15397;B2RDG4 Q15397 441 449 KIAA0020 Pumilio domain-containing protein KIAA0020 yes no 2 0.0017087 107.01 5 2 0.71944 0.98564 6.2027 4 Median 0.71944 0.98564 6.2027 4 0 Median NaN NaN NaN 0 0 Median 47421000 34403000 13019000 32466000 19447000 13019000 14955000 14955000 0 12982 1511 13325 47221;47222;47223;47224;47225;47226;47227 71223;71224;71225;71226;71227;71228;71229;71230;71231;71232 71229 10 VLMTQQPRPVL DKYSRHRITIKKRFKVLMTQQPRPVL____ KRFKVLMTQQPRPVL_______________ K V L V L - 0 1 0 0 0 2 0 0 0 0 2 0 1 0 2 0 1 0 0 2 0 0 11 1 1280.7275 Q9NPE3 Q9NPE3 54 64 NOP10 H/ACA ribonucleoprotein complex subunit 3 yes yes 2 0.031807 72.928 1 0.38315 0.55704 NaN 1 Median NaN NaN NaN 0 0 Median 0.38315 0.55704 NaN 1 0 Median 13838000 9609200 4228900 0 0 0 13838000 9609200 4228900 12983 1751 13326 47228 71233 71233 1 VLNMKPPEILSMIEEAAGTR VNNPHFLIMQGRITKVLNMKPPEILSMIEE PPEILSMIEEAAGTRMYEYKKIAAQKTIEK K V L T R M 2 1 1 0 0 0 3 1 0 2 2 1 2 0 2 1 1 0 0 1 0 0 20 1 2198.1439 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q05D74;Q6P712;Q7Z2X1;Q5T821 A0A024R158 153 172 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 3 9.8314E-08 94.632 1 1 0.45493 0.76066 NaN 1 Median NaN NaN NaN 0 0 Median 0.45493 0.76066 NaN 1 0 Median 54729000 36364000 18364000 0 0 0 54729000 36364000 18364000 12984 50 13327;13328 47229;47230 71234;71235 71235 11;12 2 VLNNFISNQK KAHTEKVHVPARPYRVLNNFISNQKMDFKE ARPYRVLNNFISNQKMDFKEDLSGIAEMFK R V L Q K M 0 0 3 0 0 1 0 0 0 1 1 1 0 1 0 1 0 0 0 1 0 0 10 0 1175.6299 P46013;Q70L73 P46013 736 745 MKI67 Antigen KI-67 no no 2 1.9595E-16 189.82 4 2 0.94282 1.2299 17.166 6 Median 0.90989 1.1905 6.5887 4 0 Median 1.0196 1.6142 1.5025 2 0 Median 654690000 338780000 315900000 457060000 238870000 218190000 197630000 99917000 97714000 12985 1342;1604 13329 47231;47232;47233;47234;47235;47236 71236;71237;71238;71239;71240;71241;71242;71243;71244;71245;71246;71247;71248;71249;71250;71251;71252;71253;71254 71242 19 VLNSYWVGEDSTYK SVAEERAGRHCGALRVLNSYWVGEDSTYKF RVLNSYWVGEDSTYKFFEVILIDPFHKAIR R V L Y K F 0 0 1 1 0 0 1 1 0 0 1 1 0 0 0 2 1 1 2 2 0 0 14 0 1659.7781 A0A024R2Q4;P61313;E7EQV9;E7ENU7;E7EX53 A0A024R2Q4 115 128 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 2 0.0019763 49.5 1 0.57069 0.91805 NaN 1 Median NaN NaN NaN 0 0 Median 0.57069 0.91805 NaN 1 0 Median 85112000 55016000 30096000 0 0 0 85112000 55016000 30096000 12986 92 13330 47237 71255 71255 1 VLNTNIDGR ______________________________ FQHILRVLNTNIDGRRKIAFAITAIKGVGR R V L G R R 0 1 2 1 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 9 0 1000.5302 P62269;A0A0G2JQH2;Q5GGW2 P62269 15 23 RPS18 40S ribosomal protein S18 yes no 2 4.8006E-09 183.74 4 2 0.84733 1.1573 25.914 6 Median 0.79032 1.089 6.1994 4 0 Median 1.1357 1.8237 1.0107 2 0 Median 746560000 412220000 334340000 656740000 369570000 287170000 89823000 42652000 47171000 12987 1402 13331 47238;47239;47240;47241;47242;47243 71256;71257;71258;71259;71260;71261;71262;71263;71264;71265;71266;71267;71268 71258 13 VLNTNIDGRR ______________________________ QHILRVLNTNIDGRRKIAFAITAIKGVGRR R V L R R K 0 2 2 1 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 10 1 1156.6313 P62269;A0A0G2JQH2;Q5GGW2 P62269 15 24 RPS18 40S ribosomal protein S18 yes no 3 0.010363 38.567 1 0.75963 1.0155 NaN 1 Median 0.75963 1.0155 NaN 1 0 Median NaN NaN NaN 0 0 Median 21526000 12804000 8721800 21526000 12804000 8721800 0 0 0 12988 1402 13332 47244 71269 71269 1 VLNVISLEFSDTR LGDFVKYYYSGKREKVLNVISLEFSDTRLS EKVLNVISLEFSDTRLSNLVETPKIVRKLS K V L T R L 0 1 1 1 0 0 1 0 0 1 2 0 0 1 0 2 1 0 0 2 0 0 13 0 1491.7933 H0Y3N9;Q9UPP1;A0A024R9Y4 H0Y3N9 91 103 PHF8 Histone lysine demethylase PHF8 yes no 2 6.9791E-11 119.16 4 0.78428 1.0898 12.182 2 Median 0.78428 1.0898 12.182 2 0 Median NaN NaN NaN 0 0 Median 8680500 5280400 3400200 8680500 5280400 3400200 0 0 0 12989 1088 13333 47245;47246;47247;47248 71270;71271;71272;71273;71274 71273 5 VLNVTNLEFSDTR LKEFVDYYYSTNRKRVLNVTNLEFSDTRMS KRVLNVTNLEFSDTRMSSFVEPPDIVKKLS R V L T R M 0 1 2 1 0 0 1 0 0 0 2 0 0 1 0 1 2 0 0 2 0 0 13 0 1506.7678 O75151 O75151 189 201 PHF2 Lysine-specific demethylase PHF2 yes yes 2 1.6311E-10 114.83 5 1 0.84429 1.1231 22.48 3 Median 0.87145 1.1636 5.0067 2 0 Median 0.56006 0.79216 NaN 1 0 Median 24414000 11046000 13368000 17104000 7080500 10023000 7310500 3965000 3345500 12990 1196 13334 47249;47250;47251;47252;47253;47254 71275;71276;71277;71278;71279;71280 71278 6 VLPAQATEYAFAFIQVPQDDDARTDAVDSVVR PSTRLGTLSPAFSTRVLPAQATEYAFAFIQ QDDDARTDAVDSVVRDIQNTQCLLNVEHLS R V L V R D 6 2 0 5 0 3 1 0 0 1 1 0 0 2 2 1 2 0 1 5 0 0 32 1 3506.7318 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B4E299;B3KU67 A0A140VK49 788 819 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 3 4.7089E-14 81.525 4 0.65749 0.86108 8.4304 4 Linear 0.65749 0.86108 8.4304 4 0 Linear NaN NaN NaN 0 0 Median 26511000 16071000 10441000 26511000 16071000 10441000 0 0 0 12991 508 13335 47255;47256;47257;47258 71281;71282;71283;71284;71285;71286;71287;71288 71287 8 VLPQLISTITASVQNPALR SMNAMGSLSVLSPDRVLPQLISTITASVQN LISTITASVQNPALRLVTREEFAIMQTPAG R V L L R L 2 1 1 0 0 2 0 0 0 2 3 0 0 0 2 2 2 0 0 2 0 0 19 0 2020.1681 E1NZA1;Q92616;A0A024RBS1;B4DM32 E1NZA1 738 756 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 4.872E-15 129.77 2 0.36547 0.48381 NaN 1 Median 0.36547 0.48381 NaN 1 0 Median NaN NaN NaN 0 0 Median 6938100 5800800 1137300 6938100 5800800 1137300 0 0 0 12992 1000 13336 47259;47260 71289;71290 71289 2 VLPSITTEILK LPRIFTSIGEDYDERVLPSITTEILKSVVA YDERVLPSITTEILKSVVARFDAGELITQR R V L L K S 0 0 0 0 0 0 1 0 0 2 2 1 0 0 1 1 2 0 0 1 0 0 11 0 1212.7329 Q6PUJ7;A8K401;P35232;Q6FHP5;Q53FV0;C9JW96;C9JZ20;E7ESE2;E9PCW0 Q6PUJ7 118 128 HEL-S-54e;PHB Prohibitin yes no 2 0.0010096 93.111 4 2 0.63685 0.8429 61.889 6 Median 0.60206 0.79586 6.1305 4 0 Median 1.6936 2.68 2.5321 2 0 Median 1246300000 723610000 522690000 993100000 630330000 362770000 253200000 93283000 159920000 12993 600 13337 47261;47262;47263;47264;47265;47266 71291;71292;71293;71294;71295;71296;71297;71298;71299;71300;71301 71295 11 VLPSIVNEVLK LPSMYQRLGLDYEERVLPSIVNEVLKSVVA YEERVLPSIVNEVLKSVVAKFNASQLITQR R V L L K S 0 0 1 0 0 0 1 0 0 1 2 1 0 0 1 1 0 0 0 3 0 0 11 0 1209.7333 J3KPX7;Q99623;F5GY37;B4DW05;F5GWA7;F5H3X6 J3KPX7 132 142 PHB2 Prohibitin-2 yes no 2 8.3351E-06 114.86 7 1 0.59118 0.78139 58.741 5 Median 0.59026 0.77901 3.2485 4 0 Median 1.8191 2.8696 NaN 1 0 Median 847910000 514750000 333160000 806770000 501830000 304940000 41138000 12919000 28219000 12994 1133 13338 47267;47268;47269;47270;47271;47272;47273;47274 71302;71303;71304;71305;71306;71307;71308;71309;71310;71311;71312;71313;71314 71308 13 VLQALEGLK MPSHFSRGSKSVARRVLQALEGLKMVEKDQ KSVARRVLQALEGLKMVEKDQDGGRKLTPQ R V L L K M 1 0 0 0 0 1 1 1 0 0 3 1 0 0 0 0 0 0 0 1 0 0 9 0 969.58588 B0ZBD0;Q8WVX7;P39019;A0A075B6E2 B0ZBD0 103 111 RPS19 40S ribosomal protein S19 yes no 2 0.0026861 99.442 3 2 0.90486 1.1261 5.1262 5 Median 0.91484 1.149 2.1329 3 0 Median 0.70165 1.0552 2.7193 2 0 Median 160570000 88878000 71692000 136220000 73792000 62431000 24348000 15087000 9261300 12995 669 13339 47275;47276;47277;47278;47279 71315;71316;71317;71318;71319;71320;71321;71322;71323;71324 71319 10 VLQALGSEPIQYAVPVVK LFISTRLGTDEISPRVLQALGSEPIQYAVP ALGSEPIQYAVPVVKYDRKGYKPRSRQLLL R V L V K Y 2 0 0 0 0 2 1 1 0 1 2 1 0 0 2 1 0 0 1 4 0 0 18 0 1910.0877 F5H6E2;B7Z3E5;O00159;D3DTH7 F5H6E2 886 903 MYO1C Unconventional myosin-Ic yes no 2 2.7126E-50 193 5 0.75297 0.92989 7.227 4 Median 0.75297 0.92989 7.227 4 0 Median NaN NaN NaN 0 0 Median 158670000 92863000 65803000 158670000 92863000 65803000 0 0 0 12996 905 13340 47280;47281;47282;47283;47284 71325;71326;71327;71328;71329;71330;71331;71332;71333 71326 9 VLQAPPPDVGNGEVPK PLLDLPELPFPELERVLQAPPPDVGNGEVP LQAPPPDVGNGEVPKELVELHLKLMRKIGK R V L P K E 1 0 1 1 0 1 1 2 0 0 1 1 0 0 4 0 0 0 0 3 0 0 16 0 1615.857 Q96T23;H0YER1;Q05DG0;H7C306 Q96T23 50 65 RSF1 Remodeling and spacing factor 1 yes no 2 0.006053 62.694 2 2 0.75767 1.1005 31.198 3 Median 0.57138 0.72957 NaN 1 0 Median 0.83044 1.2168 14.214 2 0 Median 16695000 7372100 9322700 4017400 861520 3155900 12677000 6510600 6166800 12997 1702 13341 47285;47286;47287;47288 71334;71335;71336;71337 71337 4 VLQAQGSSDPEEESVLYSNR GQYAEASALYGRALRVLQAQGSSDPEEESV GSSDPEEESVLYSNRAACHLKDGNCRDCIK R V L N R A 1 1 1 1 0 2 3 1 0 0 2 0 0 0 1 4 0 0 1 2 0 0 20 0 2207.0342 Q15785;Q6ZPD0 Q15785 38 57 TOMM34 Mitochondrial import receptor subunit TOM34 yes no 2 1.522E-18 160.79 3 0.38693 0.52334 6.128 2 Median 0.38693 0.52334 6.128 2 0 Median NaN NaN NaN 0 0 Median 8306700 5634000 2672700 8306700 5634000 2672700 0 0 0 12998 1516 13342 47289;47290;47291 71338;71339;71340;71341;71342 71338 5 VLQDLVPDDRK ELASAELAKEWPKRKVLQDLVPDDRKLKYT PKRKVLQDLVPDDRKLKYTRPGLPTFSQEV K V L R K L 0 1 0 3 0 1 0 0 0 0 2 1 0 0 1 0 0 0 0 2 0 0 11 1 1296.7038 B4DES6;B7Z9P6;G3XAG1;Q96ME7;Q658M0;B4E0X7 B4DES6 262 272 ZNF512;DKFZp666L156 Zinc finger protein 512 yes no 3 0.012045 30.563 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10476000 10476000 0 10476000 10476000 0 0 0 0 12999 799 13343 47292 71343 71343 1 VLQEALCVISGVPGLK AGEVTEAGKAYVPPRVLQEALCVISGVPGL LQEALCVISGVPGLKGDVTDTEQLAQEMLI R V L L K G 1 0 0 0 1 1 1 2 0 1 3 1 0 0 1 1 0 0 0 3 0 0 16 0 1681.9437 E1NZA1;Q92616;A0A024RBS1;B4DM32 E1NZA1 642 657 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 3.2009E-08 116.63 3 0.41145 0.52229 32.173 3 Median 0.41145 0.52229 32.173 3 0 Median NaN NaN NaN 0 0 Median 14752000 9708000 5043600 14752000 9708000 5043600 0 0 0 13000 1000 13344 47293;47294;47295 71344;71345;71346;71347 71344 4 VLQHYQESDKGEELGPGNVQK PRLCSGVLGTVVHGKVLQHYQESDKGEELG ESDKGEELGPGNVQKEVSSSFDHVIKETTR K V L Q K E 0 0 1 1 0 3 3 3 1 0 2 2 0 0 1 1 0 0 1 2 0 0 21 1 2354.1503 Q9Y6C9;Q53G34 Q9Y6C9 91 111 MTCH2 Mitochondrial carrier homolog 2 yes no 3;4 1.0246E-31 159.01 5 0.41227 0.50705 24.92 3 Median 0.41227 0.50705 24.92 3 0 Median NaN NaN NaN 0 0 Median 29304000 23313000 5990900 29304000 23313000 5990900 0 0 0 13001 1833 13345 47296;47297;47298;47299;47300 71348;71349;71350;71351;71352;71353;71354 71350 7 VLQLFTR LQAHGHDVNSFVRSRVLQLFTRIVQQKALP VNSFVRSRVLQLFTRIVQQKALPLTRFQAV R V L T R I 0 1 0 0 0 1 0 0 0 0 2 0 0 1 0 0 1 0 0 1 0 0 7 0 875.52289 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00 B3KMS0 384 390 NCAPD2 Condensin complex subunit 1 yes no 2 0.0084443 154.09 4 2 0.6658 0.89995 9.6253 6 Median 0.71304 0.97743 4.6926 4 0 Linear 0.49908 0.78676 2.6403 2 0 Median 212000000 132200000 79800000 146500000 89272000 57232000 65499000 42931000 22568000 13002 757 13346 47301;47302;47303;47304;47305;47306 71355;71356;71357;71358;71359;71360;71361;71362;71363;71364;71365;71366;71367 71355 13 VLQLINDNTATALSYGVFR ERRAVLQAARMAGLKVLQLINDNTATALSY INDNTATALSYGVFRRKDINTTAQNIMFYD K V L F R R 2 1 2 1 0 1 0 1 0 1 3 0 0 1 0 1 2 0 1 2 0 0 19 0 2094.111 B7Z766;A0A087X054;B7Z2N4;B3KXH0;Q9Y4L1;J3KTF1;A0A024R3G0;E9PJ21;Q05D91;A0A087WWI4;Q6IN67;K7EQK2 B7Z766 48 66 HYOU1 Hypoxia up-regulated protein 1 yes no 2 3.5392E-05 113.72 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 520170 520170 0 520170 520170 0 0 0 0 13003 369 13347 47307 71368 71368 1 VLQLLR IRIRGINGVSPKVRKVLQLLRLRQIFNGTF NGVSPKVRKVLQLLRLRQIFNGTFVKLNKA K V L L R L 0 1 0 0 0 1 0 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 6 0 740.49086 A0A024R814;P18124;A8MUD9;O95036;C9JIJ5;C9JZ88;Q59FH1;H0Y4W2;F2Z2U4;Q9Y4A5 A0A024R814 119 124 RPL7;WUGSC:H_RG054D04.1;TRRAP 60S ribosomal protein L7;Transformation/transcription domain-associated protein no no 2 0.019654 136.19 4 1 0.72092 0.98116 8.7739 5 Median 0.7108 0.9713 2.9596 4 0 Median 0.72457 1.1787 NaN 1 0 Median 851340000 489830000 361510000 805760000 463890000 341880000 45577000 25946000 19631000 13004 189;1050 13348 47308;47309;47310;47311;47312 71369;71370;71371;71372;71373;71374;71375;71376;71377;71378 71369 10 VLQPHPVTPSDTETR PFAWKKKALIIIWAKVLQPHPVTPSDTETR VLQPHPVTPSDTETRWQEDLFFSVGNMIPT K V L T R W 0 1 0 1 0 1 1 0 1 0 1 0 0 0 3 1 3 0 0 2 0 0 15 0 1675.8529 Q9HBB9;Q8WUM5;Q9HC39;I3L2C7;P57678;I3L4A4;I3L399;E7EN12;B4DZ29;I3L4M4 Q9HBB9 66 80 GEMIN4 Gem-associated protein 4 yes no 3 3.0224E-11 84.508 1 0.31559 0.41764 NaN 1 Median 0.31559 0.41764 NaN 1 0 Median NaN NaN NaN 0 0 Median 11627000 9367200 2260200 11627000 9367200 2260200 0 0 0 13005 1667 13349 47313 71379 71379 1 VLQQGHFEDDDPDGFLG IRLGPALKIYEHHIKVLQQGHFEDDDPDGF QQGHFEDDDPDGFLG_______________ K V L L G - 0 0 0 4 0 2 1 3 1 0 2 0 0 2 1 0 0 0 0 1 0 0 17 0 1887.8275 Q6SPF0;E9PIW9 Q6SPF0 522 538 SAMD1 Atherin yes no 2 0.0040263 90.434 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18515000 0 0 18515000 0 0 0 0 0 13006 1599 13350 47314;47315;47316 71380;71381;71382;71383 71382 4 VLQSALAAIR PNLRKLDPELHLDIKVLQSALAAIRHARWF HLDIKVLQSALAAIRHARWFEENASQSTVK K V L I R H 3 1 0 0 0 1 0 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1040.6342 B4DY09;Q53FG3;F4ZW62;Q12905;F4ZW63 B4DY09 159 168 ILF2 Interleukin enhancer-binding factor 2 yes no 2 0.0065209 89.698 1 0.71348 0.97249 NaN 1 Median 0.71348 0.97249 NaN 1 0 Median NaN NaN NaN 0 0 Median 3901800 2376300 1525400 3901800 2376300 1525400 0 0 0 13007 871 13351 47317 71384 71384 1 VLQVSIGPGLPK HQGFGDLAVLKPSNKVLQVSIGPGLPKNSR SNKVLQVSIGPGLPKNSRPTRRNTTQNTGY K V L P K N 0 0 0 0 0 1 0 2 0 1 2 1 0 0 2 1 0 0 0 2 0 0 12 0 1206.7336 Q4KMR3;Q12965 Q4KMR3 915 926 MYO1E Unconventional myosin-Ie yes no 2 6.7766E-08 105.78 3 0.53621 0.66998 2.0569 3 Median 0.53621 0.66998 2.0569 3 0 Median NaN NaN NaN 0 0 Median 65211000 42254000 22957000 65211000 42254000 22957000 0 0 0 13008 1459 13352 47318;47319;47320 71385;71386;71387 71387 3 VLRDNIQGITK GGKGLGKGGAKRHRKVLRDNIQGITKPAIR RHRKVLRDNIQGITKPAIRRLARRGGVKRI K V L T K P 0 1 1 1 0 1 0 1 0 2 1 1 0 0 0 0 1 0 0 1 0 0 11 1 1255.7248 B2R4R0;P62805;Q0VAS5 B2R4R0 22 32 HIST1H4H;HIST1H4A Histone H4 yes no 2;3 0.00059016 111.27 5 1.3169 1.7221 17.289 3 Median 1.3169 1.7221 17.289 3 0 Median NaN NaN NaN 0 0 Median 171330000 61591000 109730000 171330000 61591000 109730000 0 0 0 13009 686 13353 47321;47322;47323;47324;47325 71388;71389;71390;71391;71392;71393 71393 6 VLRSAAMASEELACKLER ARQLPASRPASPRSRVLRSAAMASEELACK SAAMASEELACKLERRLRREEAEESGPQLA R V L E R R 4 2 0 0 1 0 3 0 0 0 3 1 1 0 0 2 0 0 0 1 0 0 18 2 2033.0398 Q59EU6 Q59EU6 21 38 yes yes 2 0.014087 82.774 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13010 1553 13354 47326 71394 71394 709 1 VLSAPPHFHFGQTNR FKALIAAQYSGAQVRVLSAPPHFHFGQTNR VLSAPPHFHFGQTNRTPEFLRKFPAGKVPA R V L N R T 1 1 1 0 0 1 0 1 2 0 1 0 0 2 2 1 1 0 0 1 0 0 15 0 1706.8641 Q53YD7;P26641;B4DUK7;B4DSR4;Q2F838 Q53YD7 31 45 EEF1G Elongation factor 1-gamma yes no 4 0.00040579 89.507 3 0.29733 0.40457 18.648 3 Median 0.29733 0.40457 18.648 3 0 Median NaN NaN NaN 0 0 Median 61504000 47850000 13655000 61504000 47850000 13655000 0 0 0 13011 1299 13355 47327;47328;47329 71395;71396;71397 71395 3 VLSDVDAFIAYVGTDQK MAPVASIWLSQDMHRVLSDVDAFIAYVGTD SDVDAFIAYVGTDQKSCDPGLEDPCGLNRA R V L Q K S 2 0 0 3 0 1 0 1 0 1 1 1 0 1 0 1 1 0 1 3 0 0 17 0 1839.9254 B3KPQ5;A8K5Y7;Q9HAV4;Q9H8N6;B3KNC6 B3KPQ5 316 332 XPO5 Exportin-5 yes no 2 1.2888E-10 134.21 3 0.37238 0.48242 29.172 2 Median 0.37238 0.48242 29.172 2 0 Median NaN NaN NaN 0 0 Median 5889900 4481200 1408700 5889900 4481200 1408700 0 0 0 13012 619 13356 47330;47331;47332 71398;71399;71400 71398 2 VLSEAAISASLEK EELCNSCEMENEVLKVLSEAAISASLEKFE LKVLSEAAISASLEKFEIPVKIRLSPEPWT K V L E K F 3 0 0 0 0 0 2 0 0 1 2 1 0 0 0 3 0 0 0 1 0 0 13 0 1316.7187 B3KN05;B2RBE0;A0A024R497;O95573;B3KMA6;Q6PIM8 B3KN05 650 662 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes no 2 0.00015632 113.67 2 0.39919 0.50391 8.5555 2 Median 0.39919 0.50391 8.5555 2 0 Median NaN NaN NaN 0 0 Median 9999300 7366000 2633400 9999300 7366000 2633400 0 0 0 13013 118 13357 47333;47334 71401;71402 71402 2 VLSEDEEDVDFDIIHNANDTFTVK AGEGDVSVGIKCDARVLSEDEEDVDFDIIH DFDIIHNANDTFTVKYVPPAAGRYTIKVLF R V L V K Y 1 0 2 5 0 0 3 0 1 2 1 1 0 2 0 1 2 0 0 3 0 0 24 0 2764.2715 O75369;A0A024R321;Q68CT4;E7EN95 O75369 787 810 FLNB;DKFZp686A1668 Filamin-B yes no 3 0.00039328 55.302 3 0.9268 1.1792 17.427 3 Plateau 0.9268 1.1792 17.427 3 0 Plateau NaN NaN NaN 0 0 Median 26771000 12937000 13834000 26771000 12937000 13834000 0 0 0 13014 1199 13358 47335;47336;47337 71403;71404;71405;71406 71403 4 VLSGEFQIVNPHLLK NESIEPYTSNIYTRRVLSGEFQIVNPHLLK VLSGEFQIVNPHLLKDLTERGLWHEEMKNQ R V L L K D 0 0 1 0 0 1 1 1 1 1 3 1 0 1 1 1 0 0 0 2 0 0 15 0 1692.9563 B4E0I8;B4DNN4;P23921;B4DS95;Q53GZ5;E9PL69;B4DXB0;B4DXD1 B4E0I8 532 546 RRM1 Ribonucleoside-diphosphate reductase;Ribonucleoside-diphosphate reductase large subunit yes no 3 0.00099399 79.886 3 1 0.30817 0.39713 17.745 2 Median 0.30817 0.39713 17.745 2 0 Median NaN NaN NaN 0 0 Median 21930000 12399000 9530900 16900000 12399000 4500800 5030100 0 5030100 13015 839 13359 47338;47339;47340;47341 71407;71408;71409;71410;71411;71412 71407 6 VLSGTIHAGQPVK MYSTDDGVQFHAFGRVLSGTIHAGQPVKVL GRVLSGTIHAGQPVKVLGENYTLEDEEDSQ R V L V K V 1 0 0 0 0 1 0 2 1 1 1 1 0 0 1 1 1 0 0 2 0 0 13 0 1305.7405 B4DZB1;B3KX19;Q6IBM8;A8KAP3;Q15029;Q8IXJ3;B3KWY2 B4DZB1 447 459 U5-116KD;EFTUD2;SNRP116 116 kDa U5 small nuclear ribonucleoprotein component yes no 2;3 2.2665E-12 141.89 7 1 0.66207 0.83358 41.317 6 Median 0.65157 0.82788 24.679 5 0 Median 1.2995 1.853 NaN 1 0 Median 87393000 55324000 32070000 82696000 53231000 29466000 4696900 2092700 2604200 13016 654 13360 47342;47343;47344;47345;47346;47347;47348;47349 71413;71414;71415;71416;71417;71418;71419;71420;71421;71422;71423 71418 11 VLSHVNSGCQLLPQHQVPAY TASLLREQVAQLKQKVLSHVNSGCQLLPQH NSGCQLLPQHQVPAY_______________ K V L A Y - 1 0 1 0 1 3 0 1 2 0 3 0 0 0 2 2 0 0 1 3 0 0 20 0 2246.1266 P17535 P17535 328 347 JUND Transcription factor jun-D yes yes 3 5.862E-06 111.73 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21543000 0 0 21543000 0 0 0 0 0 13017 1276 13361 47350;47351;47352 71424;71425;71426 71424 3 VLSIGDGIAR ILGADTSVDLEETGRVLSIGDGIARVHGLR EETGRVLSIGDGIARVHGLRNVQAEEMVEF R V L A R V 1 1 0 1 0 0 0 2 0 2 1 0 0 0 0 1 0 0 0 1 0 0 10 0 999.57129 K7ERX7;V9HW26;P25705;B4DGW3;K7EK77;K7EJP1;K7EQH4 K7ERX7 74 83 ATP5A1;HEL-S-123m ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 2 0.0067693 57.859 1 2 7.7205 10.766 148.83 3 Median 0.61586 0.83339 NaN 1 0 Median 7.8763 10.972 2.6788 2 0 Median 15413000 3898800 11514000 3265800 1942100 1323600 12147000 1956600 10191000 13018 1154 13362 47353;47354;47355 71427;71428;71429 71429 3 VLSLLSAPLGSGGFTLLHAAAAAGR GVLKLQLAPSPADPRVLSLLSAPLGSGGFT SGGFTLLHAAAAAGRGSVVRLLLEAGADPT R V L G R G 6 1 0 0 0 0 0 4 1 0 6 0 0 1 1 3 1 0 0 1 0 0 25 0 2349.3169 B8ZZS4;A0A024R464;Q9H8Y5 B8ZZS4 313 337 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 yes no 3 2.4248E-07 84.689 2 0.33373 0.44847 NaN 1 Median 0.33373 0.44847 NaN 1 0 Median NaN NaN NaN 0 0 Median 1946500 1523300 423110 1946500 1523300 423110 0 0 0 13019 117 13363 47356;47357 71430;71431 71430 2 VLSPFAPDYIQR GQIRVFNHSRDRWLRVLSPFAPDYIQRSLF WLRVLSPFAPDYIQRSLFHRKGINEESCFS R V L Q R S 1 1 0 1 0 1 0 0 0 1 1 0 0 1 2 1 0 0 1 1 0 0 12 0 1404.7402 A0A024R9R7;Q9ULG1;A8K2V6;H0YMN5 A0A024R9R7 863 874 INOC1;INO80 DNA helicase INO80 yes no 2 0.0013669 63.283 2 0.81271 1.1749 14.72 2 Median NaN NaN NaN 0 0 Median 0.81271 1.1749 14.72 2 0 Median 14773000 8158200 6615300 0 0 0 14773000 8158200 6615300 13020 230 13364 47358;47359 71432;71433;71434;71435 71433 4 VLSRPNAQELPSMYQR PTGSKDLQMVNISLRVLSRPNAQELPSMYQ LSRPNAQELPSMYQRLGLDYEERVLPSIVN R V L Q R L 1 2 1 0 0 2 1 0 0 0 2 0 1 0 2 2 0 0 1 1 0 0 16 1 1887.9625 J3KPX7;Q99623;F5GY37;B4DW05;F5GWA7;F5H3X6 J3KPX7 108 123 PHB2 Prohibitin-2 yes no 3 2.9008E-05 79.326 7 0.62726 0.86757 17.847 6 Median 0.62726 0.86757 17.847 6 0 Median NaN NaN NaN 0 0 Median 171080000 111040000 60033000 171080000 111040000 60033000 0 0 0 13021 1133 13365;13366 47360;47361;47362;47363;47364;47365;47366 71436;71437;71438;71439;71440;71441;71442;71443;71444;71445 71444 404 10 VLSSIEQK VAYKNVVGGQRAAWRVLSSIEQKSNEEGSE GQRAAWRVLSSIEQKSNEEGSEEKGPEVRE R V L Q K S 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 2 0 0 0 1 0 0 8 0 902.5073 P31947 P31947 61 68 SFN 14-3-3 protein sigma yes yes 2 0.024999 54.205 1 0.64279 0.82054 NaN 1 Median 0.64279 0.82054 NaN 1 0 Median NaN NaN NaN 0 0 Median 4499000 2264800 2234300 4499000 2264800 2234300 0 0 0 13022 1312 13367 47367 71446 71446 1 VLSTVHTHSSVK LSLLVLHRLLCEHFRVLSTVHTHSSVKSVP HFRVLSTVHTHSSVKSVPENLLKCFGEQNK R V L V K S 0 0 0 0 0 0 0 0 2 0 1 1 0 0 0 3 2 0 0 3 0 0 12 0 1293.7041 B2R7M3;A0A024QZY1;Q13155;A8MU58;F8W950 B2R7M3 148 159 JTV1;AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 yes no 2;3 0.00017579 134.57 5 2 0.67397 0.85502 72.943 4 Median 0.5696 0.71771 33.175 3 0 Median 2.0986 2.8157 NaN 1 0 Median 30002000 19053000 10948000 27581000 18638000 8942800 2421100 415390 2005700 13023 23 13368 47368;47369;47370;47371;47372;47373;47374 71447;71448;71449;71450;71451;71452;71453 71447 7 VLSVDWTDTGLLLSGGADNK SCKAPLYDLAAHEDKVLSVDWTDTGLLLSG WTDTGLLLSGGADNKLYSYRYSPTTSHVGA K V L N K L 1 0 1 3 0 0 0 3 0 0 4 1 0 0 0 2 2 1 0 2 0 0 20 0 2060.0426 Q53T99;Q9GZL7;B4DRY7 Q53T99 389 408 WDR12 Ribosome biogenesis protein WDR12 yes no 2 0.028561 25.542 2 0.61634 0.93128 1.6722 2 Median NaN NaN NaN 0 0 Median 0.61634 0.93128 1.6722 2 0 Median 35457000 20803000 14654000 0 0 0 35457000 20803000 14654000 13024 1543 13369 47375;47376 71454;71455;71456 71455 3 VLSVLLNELDGVGLK GARSASKTGCDVQERVLSVLLNELDGVGLK VLSVLLNELDGVGLKTIERRGSKSSQQEFQ R V L L K T 0 0 1 1 0 0 1 2 0 0 5 1 0 0 0 1 0 0 0 3 0 0 15 0 1567.9185 Q9BVQ7;H0YCA5 Q9BVQ7 586 600 SPATA5L1 Spermatogenesis-associated protein 5-like protein 1 yes no 2 0.010228 69.216 1 0.99642 1.2341 NaN 1 Median 0.99642 1.2341 NaN 1 0 Median NaN NaN NaN 0 0 Median 1266500 824590 441910 1266500 824590 441910 0 0 0 13025 1720 13370 47377 71457 71457 1 VLTAEELNAAQTSVAYGCIK LKRSMDKLKEKERDKVLTAEELNAAQTSVA ELNAAQTSVAYGCIKYADLSHNRLNDYIFS K V L I K Y 4 0 1 0 1 1 2 1 0 1 2 1 0 0 0 1 2 0 1 2 0 0 20 0 2137.0725 P54136;B4DXW6 P54136 485 504 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 1.1424E-18 161.49 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7033400 7033400 0 7033400 7033400 0 0 0 0 13026 1373 13371 47378;47379;47380 71458;71459;71460;71461 71458 4 VLTELLEQER PWPLNEAQVQASVVKVLTELLEQERKKVVD ASVVKVLTELLEQERKKVVDTTKESSRKGW K V L E R K 0 1 0 0 0 1 3 0 0 0 3 0 0 0 0 0 1 0 0 1 0 0 10 0 1228.6663 E7ETY2;B4DRA2;J3KQ96;Q13428 E7ETY2 1318 1327 TCOF1 Treacle protein no no 2 8.083E-10 166.09 3 2 0.5625 0.74949 27.102 5 Median 0.55052 0.74929 3.2554 3 0 Median 0.75023 1.2033 2.7208 2 0 Median 149580000 91066000 58519000 56631000 36175000 20456000 92953000 54891000 38062000 13027 1016;1135;1469 13372 47381;47382;47383;47384;47385 71462;71463;71464;71465;71466;71467;71468;71469 71462 8 VLTELLEQERK PWPLNEAQVQASVVKVLTELLEQERKKVVD SVVKVLTELLEQERKKVVDTTKESSRKGWE K V L R K K 0 1 0 0 0 1 3 0 0 0 3 1 0 0 0 0 1 0 0 1 0 0 11 1 1356.7613 E7ETY2;B4DRA2;J3KQ96;Q13428 E7ETY2 1318 1328 TCOF1 Treacle protein no no 3 0.036722 46.796 1 1 0.69262 1.0095 39.198 2 Median 0.56176 0.76515 NaN 1 0 Median 0.85398 1.332 NaN 1 0 Median 9840100 5966400 3873700 3039200 1958600 1080600 6800900 4007800 2793100 13028 1016;1135;1469 13373 47386;47387 71470;71471 71470 2 VLTFDLTK LIGVYPEQGDCVISKVLTFDLTKYPDANPN GDCVISKVLTFDLTKYPDANPNPNEQ____ K V L T K Y 0 0 0 1 0 0 0 0 0 0 2 1 0 1 0 0 2 0 0 1 0 0 8 0 935.53278 Q14683;G8JLG1 Q14683 1215 1222 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 7.3545E-05 135.77 4 1 0.49785 0.63054 23.329 4 Median 0.49211 0.62257 5.4293 3 0 Median 0.67719 0.96698 NaN 1 0 Median 29803000 20282000 9520700 25066000 17182000 7884300 4736800 3100400 1636400 13029 1492 13374 47388;47389;47390;47391;47392 71472;71473;71474;71475;71476 71472 5 VLTIDPTEFK KGNNVYCLDRECRPRVLTIDPTEFKFKLAL ECRPRVLTIDPTEFKFKLALINRKYDEVLH R V L F K F 0 0 0 1 0 0 1 0 0 1 1 1 0 1 1 0 2 0 0 1 0 0 10 0 1161.6281 P53621 P53621 589 598 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.0067074 69.812 2 0.9507 1.204 NaN 1 Median 0.9507 1.204 NaN 1 0 Median NaN NaN NaN 0 0 Median 17389000 13764000 3625200 17389000 13764000 3625200 0 0 0 13030 1371 13375 47393;47394 71477;71478 71478 2 VLTLVSQIDVNNEFEK TRFTDELMEQGLTYKVLTLVSQIDVNNEFE LTLVSQIDVNNEFEKLQRERGLGSEKHRKE K V L E K L 0 0 2 1 0 1 2 0 0 1 2 1 0 1 0 1 1 0 0 3 0 0 16 0 1846.9676 Q92621 Q92621 186 201 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.0054644 44.543 2 0.29329 0.38017 NaN 1 Median 0.29329 0.38017 NaN 1 0 Median NaN NaN NaN 0 0 Median 7595600 6265800 1329800 7595600 6265800 1329800 0 0 0 13031 1673 13376 47395;47396 71479;71480 71479 2 VLTQEDFQK MEERKAKAAAISTSRVLTQEDFQKIRMAQM AISTSRVLTQEDFQKIRMAQMRKELDAAPG R V L Q K I 0 0 0 1 0 2 1 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 9 0 1106.5608 E7EW05;B4DT66;Q9NVU7 E7EW05 513 521 SDAD1 Protein SDA1 homolog yes no 2 0.0043468 74.127 2 0.17339 0.23913 NaN 1 Median NaN NaN NaN 0 0 Median 0.17339 0.23913 NaN 1 0 Median 7845700 7215400 630310 0 0 0 7845700 7215400 630310 13032 856 13377 47397;47398 71481;71482 71481 2 VLTSGIFETK QADYVPSDQDLLRCRVLTSGIFETKFQVDK LLRCRVLTSGIFETKFQVDKVNFHMFDVGG R V L T K F 0 0 0 0 0 0 1 1 0 1 1 1 0 1 0 1 2 0 0 1 0 0 10 0 1093.6019 Q5FWY2;A0A0S2Z3S5;A0A0S2Z3H8;P63092;Q5JWF2;B0AZR9;Q14455;S4R3E3 Q5FWY2 188 197 GNAS;GSA Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas yes no 2 0.0071705 65.224 2 0.57651 0.72787 NaN 1 Median 0.57651 0.72787 NaN 1 0 Median NaN NaN NaN 0 0 Median 13285000 8790800 4493700 13285000 8790800 4493700 0 0 0 13033 452 13378 47399;47400 71483;71484 71484 2 VLTVINQTQK SKLSKIRVVRKSIARVLTVINQTQKENLRK KSIARVLTVINQTQKENLRKFYKGKKYKPL R V L Q K E 0 0 1 0 0 2 0 0 0 1 1 1 0 0 0 0 2 0 0 2 0 0 10 0 1142.6659 P42766;F2Z388;A0A024R866 P42766 57 66 RPL35 60S ribosomal protein L35 yes no 2 6.265E-46 219.56 9 0.95111 1.2472 3.2895 5 Median 0.95111 1.2472 3.2895 5 0 Median NaN NaN NaN 0 0 Median 6290800000 3244000000 3046800000 6290800000 3244000000 3046800000 0 0 0 13034 1340 13379 47401;47402;47403;47404;47405;47406;47407;47408;47409 71485;71486;71487;71488;71489;71490;71491;71492;71493;71494;71495;71496;71497;71498;71499;71500;71501;71502;71503;71504 71497 20 VLVAQHDVYK DKVAQDLCKVAGIAKVLVAQHDVYKGLLPE AGIAKVLVAQHDVYKGLLPEELTPLILATQ K V L Y K G 1 0 0 1 0 1 0 0 1 0 1 1 0 0 0 0 0 0 1 3 0 0 10 0 1170.6397 A0A0S2Z3L0;P13804;H0YL12;H0YKF0;H0YLU7;A0A0S2Z3M4 A0A0S2Z3L0 76 85 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 2 0.016344 95.523 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13035 455 13380 47410 71505 71505 1 VLVATNVAAR QREITLKGFREGSFKVLVATNVAARGLDIP EGSFKVLVATNVAARGLDIPEVDLVIQSSP K V L A R G 3 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 3 0 0 10 0 1012.6029 Q9BQ39;B4DED6;B4DW97;A0A087WVC1;K0J110;Q9NTA9 Q9BQ39 441 450 DDX50;mcdrh;DKFZp761E0323 ATP-dependent RNA helicase DDX50 yes no 2 0.0050913 62.582 3 1 0.66168 0.87062 10.786 2 Median 0.71693 0.93962 NaN 1 0 Median 0.61068 0.80668 NaN 1 0 Median 13600000 9538400 4061500 10688000 7820000 2868100 2911800 1718400 1193400 13036 1707 13381 47411;47412;47413;47414 71506;71507;71508;71509 71508 4 VLVDGEEHVGFLK VVPGVKPQDWISAARVLVDGEEHVGFLKTD ARVLVDGEEHVGFLKTDGSFVVHDIPSGSY R V L L K T 0 0 0 1 0 0 2 2 1 0 2 1 0 1 0 0 0 0 0 3 0 0 13 0 1440.7613 A0A024R9K7;Q9NPA0;H0YDT8 A0A024R9K7 145 157 C15orf24;EMC7 ER membrane protein complex subunit 7 yes no 3 0.023462 46.985 1 1 0.59008 0.79546 22.008 2 Median 0.54309 0.68082 NaN 1 0 Median 0.64114 0.9294 NaN 1 0 Median 10393000 6509000 3884000 3819800 2311200 1508500 6573200 4197800 2375400 13037 225 13382 47415;47416 71510;71511 71511 2 VLVDQTTGLSR VEDMFSRFGRIINSRVLVDQTTGLSRGVAF INSRVLVDQTTGLSRGVAFIRFDKRSEAEE R V L S R G 0 1 0 1 0 1 0 1 0 0 2 0 0 0 0 1 2 0 0 2 0 0 11 0 1187.651 Q15717 Q15717 137 147 ELAVL1 ELAV-like protein 1 yes yes 2 0.0075553 52.278 1 2 0.36106 0.47494 NaN 1 Median 0.36106 0.47494 NaN 1 0 Median NaN NaN NaN 0 0 Median 13451000 6011900 7439000 8468500 6011900 2456700 4982300 0 4982300 13038 1515 13383 47417;47418;47419 71512;71513;71514 71512 3 VLVDSLVEDDRTLQSLLTPQPPLLK QQQWLLYLSNSGYLKVLVDSLVEDDRTLQS RTLQSLLTPQPPLLKALYTYESKMAFLTRV K V L L K A 0 1 0 3 0 2 1 0 0 0 7 1 0 0 3 2 2 0 0 3 0 0 25 1 2788.5586 Q92621;B4DE72;U3KPX2;Q6P486 Q92621 1524 1548 NUP205 Nuclear pore complex protein Nup205 yes no 3 0.0068187 33.425 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17438000 17438000 0 17438000 17438000 0 0 0 0 13039 1673 13384 47420 71515 71515 1 VLVEITDVDFAALK EPSGWRAVWHTNVFKVLVEITDVDFAALKA KVLVEITDVDFAALKAVVRLAEPYLCDSQV K V L L K A 2 0 0 2 0 0 1 0 0 1 2 1 0 1 0 0 1 0 0 3 0 0 14 0 1531.8498 B2RDX0;A8K7Z9;A0A024R6R1;Q8NEM2 B2RDX0 126 139 SHCBP1 SHC SH2 domain-binding protein 1 yes no 2 1.3252E-09 115.18 2 0.27347 0.3461 18.025 2 Median 0.27347 0.3461 18.025 2 0 Median NaN NaN NaN 0 0 Median 9084000 7135400 1948700 9084000 7135400 1948700 0 0 0 13040 163 13385 47421;47422 71516;71517 71517 2 VLVIGELGVGK AAAAPAPETREHLSKVLVIGELGVGKTSII HLSKVLVIGELGVGKTSIIKRYVHQLFSQH K V L G K T 0 0 0 0 0 0 1 3 0 1 2 1 0 0 0 0 0 0 0 3 0 0 11 0 1082.6699 B2R5I8;Q13637 B2R5I8 28 38 RAB32 Ras-related protein Rab-32 yes no 2 0.050873 71.349 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 579130 0 579130 579130 0 579130 0 0 0 13041 690 13386 47423 71518 71518 1 VLVLAPTR LQRNQETIKKSRSPKVLVLAPTRELANQVA KKSRSPKVLVLAPTRELANQVAKDFKDITR K V L T R E 1 1 0 0 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 2 0 0 8 0 867.55419 Q9BQ39;B4DED6;B4DW97;A0A087WVC1;K0J110 Q9BQ39 214 221 DDX50;mcdrh ATP-dependent RNA helicase DDX50 yes no 2 0.020355 57.177 2 0.58686 0.80072 3.0009 2 Median NaN NaN NaN 0 0 Median 0.58686 0.80072 3.0009 2 0 Median 10927000 7198500 3728000 0 0 0 10927000 7198500 3728000 13042 1707 13387 47424;47425 71519;71520;71521 71520 3 VLVLSQDYGK FQEMLYIMDWMDEMKVLVLSQDYGKHLLGV MDEMKVLVLSQDYGKHLLGVEDLLQKHTLV K V L G K H 0 0 0 1 0 1 0 1 0 0 2 1 0 0 0 1 0 0 1 2 0 0 10 0 1120.6128 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;F8W6C1 B2ZZ89 549 558 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.0014872 76.827 3 0.85512 1.0808 2.5511 2 Median 0.85512 1.0808 2.5511 2 0 Median NaN NaN NaN 0 0 Median 31122000 18364000 12758000 31122000 18364000 12758000 0 0 0 13043 346 13388 47426;47427;47428 71522;71523;71524;71525;71526 71525 5 VLVLVPTR LERLIYKPRQAPVTRVLVLVPTRELGIQVH RQAPVTRVLVLVPTRELGIQVHSVTRQLAQ R V L T R E 0 1 0 0 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 3 0 0 8 0 895.58549 B7Z6D5;B3GQE6;Q96GQ7;A0A087X059 B7Z6D5 261 268 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 0.0088352 79.451 3 2 0.73371 0.99391 8.8755 5 Median 0.82461 1.1284 7.3285 3 0 Plateau 0.61074 0.95675 5.1915 2 0 Median 179900000 101280000 78617000 119440000 64299000 55142000 60460000 36985000 23475000 13044 750 13389 47429;47430;47431;47432;47433 71527;71528;71529;71530;71531;71532 71530 6 VLVPGIPGHHAAIK AITKVRTPVMNSEAKVLVPGIPGHHAAIKP KVLVPGIPGHHAAIKPAPPQTEQVESKRKS K V L I K P 2 0 0 0 0 0 0 2 2 2 1 1 0 0 2 0 0 0 0 2 0 0 14 0 1407.8351 Q15061 Q15061 403 416 WDR43 WD repeat-containing protein 43 yes yes 3;4 0.00716 62.338 3 0.9918 1.239 10.659 3 Median 0.9918 1.239 10.659 3 0 Median NaN NaN NaN 0 0 Median 62971000 34245000 28727000 62971000 34245000 28727000 0 0 0 13045 1505 13390 47434;47435;47436 71533;71534;71535;71536 71533 4 VLVPGIPGHHAAIKPAPPQTEQVESK AITKVRTPVMNSEAKVLVPGIPGHHAAIKP AIKPAPPQTEQVESKRKSGGNEVSIEERLG K V L S K R 3 0 0 0 0 2 2 2 2 2 1 2 0 0 5 1 1 0 0 3 0 0 26 1 2699.4759 Q15061 Q15061 403 428 WDR43 WD repeat-containing protein 43 yes yes 4 0.036036 13.407 1 0.87444 1.3338 NaN 1 Median NaN NaN NaN 0 0 Median 0.87444 1.3338 NaN 1 0 Median 5972200 2858100 3114100 0 0 0 5972200 2858100 3114100 13046 1505 13391 47437 71537;71538 71537 2 VLVQHCPAR QAITASSANLRHSPRVLVQHCPARTPQRGD LRHSPRVLVQHCPARTPQRGDEEGLGGEEE R V L A R T 1 1 0 0 1 1 0 0 1 0 1 0 0 0 1 0 0 0 0 2 0 0 9 0 1078.5706 I3VM54;I3VM53;Q9Y2K7 I3VM54 818 826 KDM2A Lysine-specific demethylase 2A yes no 2;3 0.0024978 87.181 2 2 0.71415 0.94448 50.943 3 Plateau 0.63493 0.86358 12.663 2 0 Median 0.29265 0.3623 NaN 1 0 Median 16317000 11173000 5144600 13606000 8780500 4825300 2711500 2392200 319260 13047 1128 13392 47438;47439;47440;47441 71539;71540;71541;71542;71543 71539 5 VLVTVPLALLQK VQVTTTDGTGYSAQKVLVTVPLALLQKGAI AQKVLVTVPLALLQKGAIQFNPPLSEKKMK K V L Q K G 1 0 0 0 0 1 0 0 0 0 4 1 0 0 1 0 1 0 0 3 0 0 12 0 1292.8432 H0Y6H0;Q8NB78 H0Y6H0 441 452 KDM1B Lysine-specific histone demethylase 1B yes no 2 0.00064087 94.85 3 0.60228 0.77615 7.3037 3 Median 0.60228 0.77615 7.3037 3 0 Median NaN NaN NaN 0 0 Median 4423300 2675500 1747800 4423300 2675500 1747800 0 0 0 13048 1092 13393 47442;47443;47444 71544;71545;71546 71546 3 VLVYNNTSIVQDEILAHR RRILLAEVPTMAVEKVLVYNNTSIVQDEIL YNNTSIVQDEILAHRLGLIPIHADPRLFEY K V L H R L 1 1 2 1 0 1 1 0 1 2 2 0 0 0 0 1 1 0 1 3 0 0 18 0 2083.1062 Q96HT3;O15160;D6RDJ3;E7EQB9;H0Y723;B4DEC2 Q96HT3 84 101 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 3 2.3221E-06 61.524 2 0.52546 0.73286 2.2605 2 Median 0.52546 0.73286 2.2605 2 0 Median NaN NaN NaN 0 0 Median 15635000 10161000 5474600 15635000 10161000 5474600 0 0 0 13049 1178 13394 47445;47446 71547;71548;71549;71550 71549 4 VLYAYGYYTGEPSK PRIASGLGLAWIVGRVLYAYGYYTGEPSKR RVLYAYGYYTGEPSKRSRGALGSIALLGLV R V L S K R 1 0 0 0 0 0 1 2 0 0 1 1 0 0 1 1 1 0 4 1 0 0 14 0 1609.7664 Q53GB9;A0A024R8Z1;Q5VV89;O14880 Q53GB9 98 111 MGST3 Microsomal glutathione S-transferase 3 yes no 2 1.2929E-09 107.85 4 2 0.72472 0.90859 97.911 6 Median 0.70404 0.8707 4.3153 4 0 Median 3.9095 5.8523 19.231 2 0 Median 124240000 62049000 62193000 102800000 57456000 45347000 21439000 4593300 16846000 13050 208 13395 47447;47448;47449;47450;47451;47452 71551;71552;71553;71554;71555;71556;71557;71558;71559;71560;71561;71562 71559 11 VLYAYGYYTGEPSKR PRIASGLGLAWIVGRVLYAYGYYTGEPSKR VLYAYGYYTGEPSKRSRGALGSIALLGLVG R V L K R S 1 1 0 0 0 0 1 2 0 0 1 1 0 0 1 1 1 0 4 1 0 0 15 1 1765.8675 Q53GB9;A0A024R8Z1;Q5VV89;O14880 Q53GB9 98 112 MGST3 Microsomal glutathione S-transferase 3 yes no 2;3 0.00078454 98.156 5 1 0.68164 0.90245 125.75 3 Median 0.61344 0.8178 13.93 2 0 Median 4.7418 7.1728 NaN 1 0 Median 36578000 20514000 16063000 30974000 19520000 11453000 5604000 994030 4609900 13051 208 13396 47453;47454;47455;47456;47457;47458 71563;71564;71565;71566;71567;71568;71569 71563 7 VLYDAEISQIHQSVTDTNVILSMDNSR QSKVDLLNQEIEFLKVLYDAEISQIHQSVT SVTDTNVILSMDNSRNLDLDSIIAEVKAQY K V L S R N 1 1 2 3 0 2 1 0 1 3 2 0 1 0 0 4 2 0 1 3 0 0 27 0 3047.487 CON__P35908;P35908 CON__P35908 321 347 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 3 1.3898E-15 92.41 7 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 122540000 122540000 0 39927000 39927000 0 82610000 82610000 0 + 13052 964 13397;13398 47459;47460;47461;47462;47463;47464;47465;47466;47467 71570;71571;71572;71573;71574;71575;71576;71577;71578;71579 71574 346 10 VLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHR ILGGVDQIHIKPGAKVLYLGAASGTTVSHV VGPDGLVYAVEFSHRSGRDLINLAKKRTNI K V L H R S 3 1 0 2 0 0 1 4 2 1 3 0 0 1 1 4 2 0 2 6 0 0 33 0 3415.7412 Q96BS4;P22087;M0R299;M0QXL5;M0R2Q4;B4DLD4;M0R0P1 Q96BS4 102 134 FBL rRNA 2-O-methyltransferase fibrillarin yes no 3;4 1.1027E-37 102.91 8 3 0.6684 0.92527 11.401 11 Median 0.7185 0.95892 7.4117 8 0 Median 0.48143 0.80486 10.968 3 0 Median 909610000 556200000 353420000 493880000 289270000 204610000 415740000 266930000 148800000 13053 1288 13399 47468;47469;47470;47471;47472;47473;47474;47475;47476;47477;47478 71580;71581;71582;71583;71584;71585;71586;71587;71588;71589;71590;71591;71592;71593;71594;71595;71596;71597 71587 18 VLYLLSQLQQSQMAEK LQAELVRMEQQHQEKVLYLLSQLQQSQMAE LYLLSQLQQSQMAEKQLEESVSEKEQQLLS K V L E K Q 1 0 0 0 0 4 1 0 0 0 4 1 1 0 0 2 0 0 1 1 0 0 16 0 1877.9921 Q59HG1;O95239;B3KNC0 Q59HG1 934 949 KIF4A Kinesin-like protein;Chromosome-associated kinesin KIF4A yes no 2 2.5754E-09 87.719 2 0.61301 0.97218 1.1195 2 Median NaN NaN NaN 0 0 Median 0.61301 0.97218 1.1195 2 0 Median 69413000 41714000 27699000 0 0 0 69413000 41714000 27699000 13054 1216 13400 47479;47480 71598;71599 71598 456 2 VLYLPSFFTYAK EPMPPTLGTNVLGRKVLYLPSFFTYAKYIV GRKVLYLPSFFTYAKYIVQVDGKIGLFRGL K V L A K Y 1 0 0 0 0 0 0 0 0 0 2 1 0 2 1 1 1 0 2 1 0 0 12 0 1447.7751 A8YXX5;Q9Y374;A4FVA6;A0A024RD08;A0A024RCX4;H0Y8C3;Q8IW90;Q9NZJ7 A8YXX5 108 119 PIG60;MTCH1 Mitochondrial carrier homolog 1 yes no 2 0.0029716 94.297 3 0.58837 0.74241 61.027 3 Plateau 0.58837 0.74241 61.027 3 0 Plateau NaN NaN NaN 0 0 Median 8945100 6279800 2665300 8945100 6279800 2665300 0 0 0 13055 305 13401 47481;47482;47483 71600;71601;71602;71603 71600 4 VMEIVDADEK ASITSEVFNKFFKERVMEIVDADEKVRHSK FFKERVMEIVDADEKVRHSKLAESVEKAIE R V M E K V 1 0 0 2 0 0 2 0 0 1 0 1 1 0 0 0 0 0 0 2 0 0 10 0 1147.5431 Q9Y5B9;Q0VGA3 Q9Y5B9 202 211 SUPT16H FACT complex subunit SPT16 yes no 2 0.00061934 79.148 3 4 0.9204 1.353 7.2313 5 Median 0.96938 1.243 NaN 1 0 Median 0.90959 1.4341 7.1978 4 0 Linear 89175000 49832000 39343000 1773700 763830 1009800 87401000 49068000 38333000 13056 1829 13402;13403 47484;47485;47486;47487;47488;47489;47490 71604;71605;71606;71607;71608;71609;71610;71611 71609 853 8 VMENSSGTPDILTR MSRSNVQPTAAPGQKVMENSSGTPDILTRH KVMENSSGTPDILTRHFTIDDFEIGRPLGK K V M T R H 0 1 1 1 0 0 1 1 0 1 1 0 1 0 1 2 2 0 0 1 0 0 14 0 1518.7348 Q96GD4;J3KTD6;J3QLN8;J3QR41;J3KRF8;J3KRJ2 Q96GD4 57 70 AURKB Aurora kinase B yes no 2 7.8297E-07 106.01 5 2 0.78245 1.1549 18.699 6 Median 0.97968 1.3301 22.234 4 0 Median 0.65302 1.0717 0.55622 2 0 Median 287690000 173660000 114040000 23019000 10479000 12540000 264680000 163180000 101500000 13057 1686 13404;13405 47491;47492;47493;47494;47495;47496;47497 71612;71613;71614;71615;71616;71617;71618;71619;71620;71621 71617 762 10 VMEPLTASR CTGRNIRQLSLDVRRVMEPLTASRLQVRKK SLDVRRVMEPLTASRLQVRKKNSLKDCVAV R V M S R L 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 1 1 0 0 1 0 0 9 0 1002.5168 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55 A0A0A6YYI3 53 61 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 0.0091003 54.982 1 0.55401 0.83478 NaN 1 Median NaN NaN NaN 0 0 Median 0.55401 0.83478 NaN 1 0 Median 16649000 10798000 5850600 0 0 0 16649000 10798000 5850600 13058 408 13406 47498 71622 71622 129 1 VMFENPDFQVDEESEEFR KVKSLPNILTDDRFKVMFENPDFQVDEESE ENPDFQVDEESEEFRLLNPLVSKISEKRKK K V M F R L 0 1 1 2 0 1 5 0 0 0 0 0 1 3 1 1 0 0 0 2 0 0 18 0 2245.9474 Q9BSC4;B4DS83 Q9BSC4 487 504 NOL10 Nucleolar protein 10 yes no 2 0.00017498 49.31 1 0.66877 1.0824 NaN 1 Median NaN NaN NaN 0 0 Median 0.66877 1.0824 NaN 1 0 Median 40918000 26321000 14597000 0 0 0 40918000 26321000 14597000 13059 1710 13407 47499 71623 71623 775 1 VMLLQQGLNDR LAEKVHMRAMSIAQRVMLLQQGLNDRSDAV IAQRVMLLQQGLNDRSDAVKQAMQKHLLQG R V M D R S 0 1 1 1 0 2 0 1 0 0 3 0 1 0 0 0 0 0 0 1 0 0 11 0 1285.6813 Q9BPX3;Q6NUR1 Q9BPX3 247 257 NCAPG Condensin complex subunit 3 yes no 2 1.4587E-06 117.89 5 2 0.57576 0.80913 12.481 5 Median 0.60067 0.84772 11.267 3 0 Median 0.45308 0.74072 0.74499 2 0 Median 209500000 143530000 65967000 11586000 8543000 3043000 197910000 134990000 62924000 13060 1706 13408;13409 47500;47501;47502;47503;47504;47505;47506 71624;71625;71626;71627;71628;71629;71630;71631 71630 770 8 VMLYPSR FRSNLPAKAIGHRIRVMLYPSRI_______ KAIGHRIRVMLYPSRI______________ R V M S R I 0 1 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 1 1 0 0 7 0 864.45276 P18077 P18077 103 109 RPL35A 60S ribosomal protein L35a yes yes 2 0.029302 49.358 2 0.4851 0.78136 1.2706 2 Median NaN NaN NaN 0 0 Median 0.4851 0.78136 1.2706 2 0 Median 99307000 66237000 33070000 0 0 0 99307000 66237000 33070000 13061 1280 13410 47507;47508 71632;71633;71634 71634 535 3 VMLYPSRI FRSNLPAKAIGHRIRVMLYPSRI_______ AIGHRIRVMLYPSRI_______________ R V M R I - 0 1 0 0 0 0 0 0 0 1 1 0 1 0 1 1 0 0 1 1 0 0 8 1 977.53682 P18077 P18077 103 110 RPL35A 60S ribosomal protein L35a yes yes 2 0.017983 89.369 4 0.75062 1.0234 8.3106 4 Median 0.75062 1.0234 8.3106 4 0 Median NaN NaN NaN 0 0 Median 59565000 35288000 24277000 59565000 35288000 24277000 0 0 0 13062 1280 13411;13412 47509;47510;47511;47512 71635;71636;71637;71638;71639 71639 535 4 VMTVSFHK HHGDGVEEAFYTTDRVMTVSFHKYGEYFPG AFYTTDRVMTVSFHKYGEYFPGTGDLRDIG R V M H K Y 0 0 0 0 0 0 0 0 1 0 0 1 1 1 0 1 1 0 0 2 0 0 8 0 947.48987 Q92769;B3KUJ5;E7ESJ6;O15379;Q6IT96;B5BU61;Q13547;Q5TEE2;B4DSK9;B7Z3S4 Q92769 194 201 HDAC2;HDAC3;HDAC1 Histone deacetylase 2;Histone deacetylase;Histone deacetylase 3;Histone deacetylase 1 no no 2 0.003253 86.953 2 0.87739 1.3295 2.4923 2 Median NaN NaN NaN 0 0 Median 0.87739 1.3295 2.4923 2 0 Median 27466000 14709000 12757000 0 0 0 27466000 14709000 12757000 13063 1675;894 13413 47513;47514 71640;71641 71641 308 2 VMVQPINLIFR ______________________________ KVQKVMVQPINLIFRYLQNRSRIQVWLYEQ K V M F R Y 0 1 1 0 0 1 0 0 0 2 1 0 1 1 1 0 0 0 0 2 0 0 11 0 1328.7639 P62304 P62304 13 23 SNRPE Small nuclear ribonucleoprotein E yes yes 2 0.00063798 80.438 3 2 0.80847 1.2521 14.929 5 Median 0.73599 1.0403 15.692 3 0 Median 0.83326 1.2947 4.7327 2 0 Median 65342000 36930000 28413000 11539000 6351000 5188000 53803000 30579000 23225000 13064 1405 13414;13415 47515;47516;47517;47518;47519 71642;71643;71644;71645;71646;71647;71648;71649 71646 614 8 VNAAFAAR ______________________________ RGSSQLRVNAAFAARYNRYREREELQRLKD R V N A R Y 4 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 8 0 818.43989 Q8N9T8;B4DUT2;B4DUY9;H0YFD2;H0YH26;H0YG91 Q8N9T8 12 19 KRI1 Protein KRI1 homolog yes no 2 0.0042769 97.473 2 0.54142 0.78383 5.8197 2 Median NaN NaN NaN 0 0 Median 0.54142 0.78383 5.8197 2 0 Median 26676000 16654000 10022000 0 0 0 26676000 16654000 10022000 13065 1645 13416 47520;47521 71650;71651 71650 2 VNALLPTETFIPVIR FWRALLSKAYDLLDKVNALLPTETFIPVIR VNALLPTETFIPVIRGLVGNPLPSVRRKAL K V N I R G 1 1 1 0 0 0 1 0 0 2 2 0 0 1 2 0 2 0 0 2 0 0 15 0 1681.9767 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B7ZAU8;Q8N7L7 B2RWN5 1591 1605 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 8.1771E-19 142.89 4 0.79184 1.0864 6.5017 4 Median 0.79184 1.0864 6.5017 4 0 Median NaN NaN NaN 0 0 Median 217570000 124550000 93019000 217570000 124550000 93019000 0 0 0 13066 748 13417 47522;47523;47524;47525 71652;71653;71654;71655;71656;71657;71658;71659;71660 71658 9 VNATGPQFVSGVIVK NEKTANREECRTQEKVNATGPQFVSGVIVK VNATGPQFVSGVIVKIISTEPLPGRKQVRD K V N V K I 1 0 1 0 0 1 0 2 0 1 0 1 0 1 1 1 1 0 0 4 0 0 15 0 1514.8457 Q4G0J3;H0YA82;D6R9Z6;A0A024RDH5 Q4G0J3 444 458 LARP7;HDCMA18P La-related protein 7 yes no 2 1.6515E-05 77.894 2 0.6483 0.83416 11.873 2 Median 0.6483 0.83416 11.873 2 0 Median NaN NaN NaN 0 0 Median 10748000 7127700 3620200 10748000 7127700 3620200 0 0 0 13067 1534 13418 47526;47527 71661;71662 71662 2 VNCSFYFK MAEYLASIFGTEKDKVNCSFYFKIGACRHG FGTEKDKVNCSFYFKIGACRHGDRCSRLHN K V N F K I 0 0 1 0 1 0 0 0 0 0 0 1 0 2 0 1 0 0 1 1 0 0 8 0 1063.4797 P0DN76;B5BU08;Q01081;A0A1B0GW87;M0QYK5;Q69YM7;M0R2N4;Q8WU68 P0DN76 16 23 U2AF1;U2AF1L4;DKFZp313J1712 Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit yes no 2 0.044888 71.342 1 0.46704 0.6057 NaN 1 Median 0.46704 0.6057 NaN 1 0 Median NaN NaN NaN 0 0 Median 4999400 3235100 1764400 4999400 3235100 1764400 0 0 0 13068 892 13419 47528 71663 71663 1 VNDFLAEIFK EKGASRIDEKSSKAKVNDFLAEIFKKIGSK SSKAKVNDFLAEIFKKIGSKENTKEGLAEL K V N F K K 1 0 1 1 0 0 1 0 0 1 1 1 0 2 0 0 0 0 0 1 0 0 10 0 1194.6285 Q14008;Q8IYN5;H0YDX5 Q14008 1829 1838 CKAP5 Cytoskeleton-associated protein 5 yes no 2 0.0019288 73.985 1 0.92492 1.1852 NaN 1 Median 0.92492 1.1852 NaN 1 0 Median NaN NaN NaN 0 0 Median 3557400 1955200 1602200 3557400 1955200 1602200 0 0 0 13069 1481 13420 47529 71664;71665 71664 2 VNDTIQIDLETGK THDARTIRYPDPLIKVNDTIQIDLETGKIT IKVNDTIQIDLETGKITDFIKFDTGNLCMV K V N G K I 0 0 1 2 0 1 1 1 0 2 1 1 0 0 0 0 2 0 0 1 0 0 13 0 1444.7409 B2R491;P62701;Q96IR1;Q53HV1 B2R491 156 168 RPS4X 40S ribosomal protein S4;40S ribosomal protein S4, X isoform yes no 2 1.4611E-52 241.39 4 2 0.76911 1.0235 21.251 5 Median 0.78251 1.0347 2.5672 3 0 Median 0.45274 0.71471 8.3031 2 0 Median 1097400000 664610000 432790000 760730000 426330000 334400000 336670000 238280000 98388000 13070 681 13421 47530;47531;47532;47533;47534;47535 71666;71667;71668;71669;71670;71671;71672;71673;71674;71675;71676 71666 11 VNEISVEVDSDPR TRAKKKMVVMHPMPRVNEISVEVDSDPRAA PRVNEISVEVDSDPRAAYFRQAENGMYIRM R V N P R A 0 1 1 2 0 0 2 0 0 1 0 0 0 0 1 2 0 0 0 3 0 0 13 0 1457.6998 Q53SY7;F8VPD4;P27708;H7C2E4 Q53SY7 2114 2126 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.017194 51.092 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13071 1060 13422 47536 71677 71677 1 VNEVGVDVNR KEELLNALYCEFINRVNEVGVDVNRAIAHP EFINRVNEVGVDVNRAIAHPYSQALIQYVC R V N N R A 0 1 2 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 4 0 0 10 0 1099.5622 Q7KZ85 Q7KZ85 966 975 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.019275 46.001 1 0.844 1.1611 NaN 1 Median 0.844 1.1611 NaN 1 0 Median NaN NaN NaN 0 0 Median 4552300 2302300 2249900 4552300 2302300 2249900 0 0 0 13072 1609 13423 47537 71678 71678 1 VNEVLNR RLLAHRVETKMKGNKVNEVLNRLHLAIPTR ETKMKGNKVNEVLNRLHLAIPTRRDDKERP K V N N R L 0 1 2 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 7 0 842.46102 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;B4DHR2;O60747 Q53GS0 353 359 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.02398 60.76 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13073 975 13424 47538 71679 71679 1 VNEVNQFAAK KFEEFQTDMAAHEERVNEVNQFAAKLIQEQ AHEERVNEVNQFAAKLIQEQHPEEELIKTK R V N A K L 2 0 2 0 0 1 1 0 0 0 0 1 0 1 0 0 0 0 0 2 0 0 10 0 1118.572 Q13813;A0A0D9SGF6;A0A024R889;A0A0D9SF54;B4DGT1;B4DTV8 Q13813 205 214 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 2 0.0006982 124.98 1 0.95467 1.2372 NaN 1 Median 0.95467 1.2372 NaN 1 0 Median NaN NaN NaN 0 0 Median 7673000 4000900 3672100 7673000 4000900 3672100 0 0 0 13074 1476 13425 47539 71680 71680 1 VNFDDYTVNLGGLK IFEQPESVVNTMRGRVNFDDYTVNLGGLKD RVNFDDYTVNLGGLKDHIKEIQRCRRLILI R V N L K D 0 0 2 2 0 0 0 2 0 0 2 1 0 1 0 0 1 0 1 2 0 0 14 0 1553.7726 Q06210 Q06210 362 375 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 0.015396 44.299 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5948100 0 5948100 0 0 0 5948100 0 5948100 13075 1445 13426 47540 71681 71681 1 VNFLPEIITLSK STRVRGRTGNVLKLKVNFLPEIITLSKEVR KLKVNFLPEIITLSKEVRNLKWLGFRVPLA K V N S K E 0 0 1 0 0 0 1 0 0 2 2 1 0 1 1 1 1 0 0 1 0 0 12 0 1372.7966 Q14204 Q14204 737 748 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00042307 97.734 4 0.63233 0.80241 10.687 4 Median 0.63233 0.80241 10.687 4 0 Median NaN NaN NaN 0 0 Median 21831000 13309000 8522300 21831000 13309000 8522300 0 0 0 13076 1483 13427 47541;47542;47543;47544 71682;71683;71684;71685;71686 71685 5 VNFPENGFLSPDK YRRPYEKGRLIIEFKVNFPENGFLSPDKLS FKVNFPENGFLSPDKLSLLEKLLPERKEVE K V N D K L 0 0 2 1 0 0 1 1 0 0 1 1 0 2 2 1 0 0 0 1 0 0 13 0 1462.7092 P31689;B7Z5C0;Q9NXZ8 P31689 326 338 DNAJA1;HDJ2 DnaJ homolog subfamily A member 1 yes no 2 0.00018831 73.499 1 0.46123 0.58468 NaN 1 Median 0.46123 0.58468 NaN 1 0 Median NaN NaN NaN 0 0 Median 7737400 4404500 3332900 7737400 4404500 3332900 0 0 0 13077 1309 13428 47545 71687 71687 1 VNFTVDQIR ______________________________ ______________________________ M V N I R A 0 1 1 1 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 2 0 0 9 0 1090.5771 P13639;B4DPU3;Q6PK56;B4DRE8;B4DMC6 P13639 2 10 EEF2 Elongation factor 2 yes no 2 1.6475E-11 153.78 3 1 0.53946 0.73477 9.665 3 Median 0.53946 0.73477 9.665 3 0 Median NaN NaN NaN 0 0 Median 97062000 56614000 40449000 93235000 56614000 36622000 3827000 0 3827000 13078 1264 13429 47546;47547;47548;47549 71688;71689;71690;71691;71692;71693;71694 71690 7 VNGRPLEMIEPR ATAVAHCKRGNGLIKVNGRPLEMIEPRTLQ LIKVNGRPLEMIEPRTLQYKLLEPVLLLGK K V N P R T 0 2 1 0 0 0 2 1 0 1 1 0 1 0 2 0 0 0 0 1 0 0 12 1 1409.7449 P62249;M0R3H0;M0R1M5;Q6IPX4 P62249 34 45 RPS16 40S ribosomal protein S16 yes no 3 0.035586 51.612 1 0.67546 0.93731 NaN 1 Median 0.67546 0.93731 NaN 1 0 Median NaN NaN NaN 0 0 Median 11008000 6958100 4050200 11008000 6958100 4050200 0 0 0 13079 1400 13430 47550 71695 71695 1 VNIFGVESGKK SPDSQYLATGTHVGKVNIFGVESGKKEYSL HVGKVNIFGVESGKKEYSLDTRGKFILSIA K V N K K E 0 0 1 0 0 0 1 2 0 1 0 2 0 1 0 1 0 0 0 2 0 0 11 1 1176.6503 Q9GZS3;H0YL19;H0YN81;H0YMF9 Q9GZS3 130 140 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes no 2 0.012383 78.098 2 0.64506 0.80012 11.102 2 Median 0.64506 0.80012 11.102 2 0 Median NaN NaN NaN 0 0 Median 19274000 11627000 7647500 19274000 11627000 7647500 0 0 0 13080 1729 13431 47551;47552 71696;71697;71698 71698 3 VNIIPLIAK LKPLDIEFMKRLHEKVNIIPLIAKADTLTP KRLHEKVNIIPLIAKADTLTPEECQQFKKQ K V N A K A 1 0 1 0 0 0 0 0 0 3 1 1 0 0 1 0 0 0 0 1 0 0 9 0 979.643 Q3B7A3;Q59EY4;B4DUD6;Q8TC62;E7ES33;Q3LIE9;A4GYY8;A8K3D0;E7EPK1;Q16181;A0A0U1RRE1;B4DNE4;A0A024RA87;G3V1Q4;A0A023T695;A0A0U1RRH9;B4DPQ6;Q6ZU15 Q3B7A3 186 194 SEPT7;Nbla02942;DKFZp686F17268;SEPT14 Septin-7;Septin-14 yes no 2 0.030318 67.981 3 0.91815 1.1742 17.687 3 Median 0.91815 1.1742 17.687 3 0 Median NaN NaN NaN 0 0 Median 8879200 4677000 4202200 8879200 4677000 4202200 0 0 0 13081 555 13432 47553;47554;47555 71699;71700;71701 71701 3 VNIKPQVDR VEIDVKWLNENAVEKVNIKPQVDRYRLKNG ENAVEKVNIKPQVDRYRLKNGRRIILLAEG K V N D R Y 0 1 1 1 0 1 0 0 0 1 0 1 0 0 1 0 0 0 0 2 0 0 9 1 1067.6087 Q1RMG2;P23526 Q1RMG2 193 201 AHCY Adenosylhomocysteinase yes no 3 0.02162 61.56 1 0.42287 0.56752 NaN 1 Median 0.42287 0.56752 NaN 1 0 Median NaN NaN NaN 0 0 Median 4356700 2852800 1503900 4356700 2852800 1503900 0 0 0 13082 1294 13433 47556 71702 71702 1 VNILEVASGAVLR LDQTGQHLFCVCGTRVNILEVASGAVLRSL TRVNILEVASGAVLRSLEQEDQEDITAFDL R V N L R S 2 1 1 0 0 0 1 1 0 1 2 0 0 0 0 1 0 0 0 3 0 0 13 0 1339.7823 Q12788 Q12788 47 59 TBL3 Transducin beta-like protein 3 yes yes 2 1.2744E-20 190.26 4 2 0.83482 1.1865 6.8818 6 Median 0.86872 1.192 5.269 4 0 Median 0.67885 1.1021 10.285 2 0 Median 309610000 175790000 133810000 161200000 86127000 75070000 148410000 89667000 58744000 13083 1456 13434 47557;47558;47559;47560;47561;47562 71703;71704;71705;71706;71707;71708;71709;71710;71711;71712;71713;71714 71705 12 VNIVPVIAK LKPLDVAFMKAIHNKVNIVPVIAKADTLTL KAIHNKVNIVPVIAKADTLTLKERERLKKR K V N A K A 1 0 1 0 0 0 0 0 0 2 0 1 0 0 1 0 0 0 0 3 0 0 9 0 951.6117 C9J2Q4;B5MCX3;Q15019;H7C310;H7C2Y0 C9J2Q4 135 143 SEPT2 Septin-2 yes no 2 0.0209 51.854 1 0.9386 1.2304 NaN 1 Median 0.9386 1.2304 NaN 1 0 Median NaN NaN NaN 0 0 Median 5143800 2519900 2623900 5143800 2519900 2623900 0 0 0 13084 900 13435 47563 71715 71715 1 VNLDSEQAVKKKK MMSNFFGKAAMNKFKVNLDSEQAVKKKKKK FKVNLDSEQAVKKKKKKKKKK_________ K V N K K K 1 0 1 1 0 1 1 0 0 0 1 4 0 0 0 1 0 0 0 2 0 0 13 3 1485.8515 Q569I8 Q569I8 249 261 POLD3 yes yes 2 0.017583 49.368 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13085 1548 13436 47564 71716 71716 1 VNLFTDFDK KNADGYKLDKQHTFRVNLFTDFDKYMTISD KQHTFRVNLFTDFDKYMTISDEWDIPEKQP R V N D K Y 0 0 1 2 0 0 0 0 0 0 1 1 0 2 0 0 1 0 0 1 0 0 9 0 1097.5393 Q96G38;B4DXN6;B4DV79;A4D210;A0A024R821;P55884;Q86UM1;C9JZG1 Q96G38 72 80 EIF3B;EIF3S9 Eukaryotic translation initiation factor 3 subunit B yes no 2 0.026371 75.378 2 0.31111 0.40296 4.846 2 Median 0.31111 0.40296 4.846 2 0 Median NaN NaN NaN 0 0 Median 4052700 2789900 1262800 4052700 2789900 1262800 0 0 0 13086 190 13437 47565;47566 71717;71718 71717 2 VNLNTIK ATMFQNLFPSINVHKVNLNTIKRCLLIDYN FPSINVHKVNLNTIKRCLLIDYNPDSQELD K V N I K R 0 0 2 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 7 0 800.4756 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;C9J3W3 A0A0A6YYI3 172 178 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 0.012128 102.8 1 2 0.71683 0.89346 10.851 3 Plateau 0.71683 0.89346 NaN 1 0 Median 0.51322 0.76773 9.0643 2 0 Median 82429000 49218000 33211000 63350000 37206000 26144000 19079000 12012000 7067200 13087 408 13438 47567;47568;47569 71719;71720;71721 71719 3 VNLNTIKR ATMFQNLFPSINVHKVNLNTIKRCLLIDYN PSINVHKVNLNTIKRCLLIDYNPDSQELDF K V N K R C 0 1 2 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 8 1 956.57671 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;C9J3W3 A0A0A6YYI3 172 179 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 3 0.0055883 65.246 3 0.79872 1.0734 5.8103 3 Median 0.79872 1.0734 5.8103 3 0 Median NaN NaN NaN 0 0 Median 39743000 21696000 18047000 39743000 21696000 18047000 0 0 0 13088 408 13439 47570;47571;47572 71722;71723;71724;71725 71725 4 VNLTLADLEQLAGSDLK EGGEEYNAMMKNCLRVNLTLADLEQLAGSD LTLADLEQLAGSDLKVPNEDTKSDGPETTT R V N L K V 2 0 1 2 0 1 1 1 0 0 5 1 0 0 0 1 1 0 0 1 0 0 17 0 1798.9676 F5H101;A0A024R250;Q76FK4;F8WE42;Q6AI50;A6H8Z4 F5H101 484 500 NOL8;DKFZp686P12242 Nucleolar protein 8 yes no 2 4.2767E-10 94.09 2 0.82446 1.0249 4.8514 2 Median 0.82446 1.0249 4.8514 2 0 Median NaN NaN NaN 0 0 Median 36687000 19687000 17000000 36687000 19687000 17000000 0 0 0 13089 80 13440 47573;47574 71726;71727 71726 1 VNNASLIGLGYTQTLRPGVK AAKYMLDCRTSLSAKVNNASLIGLGYTQTL LIGLGYTQTLRPGVKLTLSALIDGKNFSAG K V N V K L 1 1 2 0 0 1 0 3 0 1 3 1 0 0 1 1 2 0 1 2 0 0 20 1 2100.1691 Q9Y277 Q9Y277 237 256 VDAC3 Voltage-dependent anion-selective channel protein 3 yes yes 2;3 3.6572E-25 170.74 7 2 0.64264 0.84429 71.073 8 Median 0.61219 0.80401 8.5168 6 0 Median 2.2362 3.7385 9.2466 2 0 Median 311050000 173200000 137850000 257920000 155650000 102270000 53123000 17548000 35575000 13090 1803 13441 47575;47576;47577;47578;47579;47580;47581;47582;47583 71728;71729;71730;71731;71732;71733;71734;71735;71736;71737;71738;71739;71740;71741;71742;71743 71732 16 VNNASYCPHCGEESSK ESSISHRFHKDCASRVNNASYCPHCGEESS NNASYCPHCGEESSKAKEVTIAKADTTSTV R V N S K A 1 0 2 0 2 0 2 1 1 0 0 1 0 0 1 3 0 0 1 1 0 0 16 0 1837.7359 A0A1B0GV09;Q9H9B1;A0A1B0GU48 A0A1B0GV09 590 605 EHMT1 Histone-lysine N-methyltransferase EHMT1 no no 3 0.00016132 92.269 1 0.59202 0.72014 NaN 1 Median 0.59202 0.72014 NaN 1 0 Median NaN NaN NaN 0 0 Median 777700 538570 239120 777700 538570 239120 0 0 0 13091 518 13442 47584 71744 71744 1 VNNSSLIGLGYTQTLK AAKYQIDPDACFSAKVNNSSLIGLGYTQTL NNSSLIGLGYTQTLKPGIKLTLSALLDGKN K V N L K P 0 0 2 0 0 1 0 2 0 1 3 1 0 0 0 2 2 0 1 1 0 0 16 0 1706.9203 A0A1L1UHR1;P21796;B3KTS5;B4DEI3 A0A1L1UHR1 237 252 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2 1.2435E-42 201.38 4 2 0.70247 0.88862 82.825 6 Median 0.65255 0.8166 8.606 4 0 Median 2.6492 4.1552 8.7296 2 0 Median 246420000 128080000 118340000 187220000 111180000 76032000 59203000 16898000 42305000 13092 524 13443 47585;47586;47587;47588;47589;47590 71745;71746;71747;71748;71749;71750;71751;71752;71753;71754;71755 71746 11 VNNSSLIGLGYTQTLKPGIK AAKYQIDPDACFSAKVNNSSLIGLGYTQTL LIGLGYTQTLKPGIKLTLSALLDGKNVNAG K V N I K L 0 0 2 0 0 1 0 3 0 2 3 2 0 0 1 2 2 0 1 1 0 0 20 1 2102.1736 A0A1L1UHR1;P21796;B3KTS5;B4DEI3 A0A1L1UHR1 237 256 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2;3 3.7659E-21 152.59 9 2 0.70831 0.87313 77.258 8 Median 0.69141 0.84682 16.585 6 0 Median 2.5797 4.1636 3.7404 2 0 Median 790190000 416070000 374120000 649800000 375410000 274390000 140380000 40657000 99728000 13093 524 13444 47591;47592;47593;47594;47595;47596;47597;47598;47599;47600;47601 71756;71757;71758;71759;71760;71761;71762;71763;71764;71765;71766;71767;71768;71769;71770 71757 15 VNNSSLIGVGYTQTLR AAKYQLDPTASISAKVNNSSLIGVGYTQTL NNSSLIGVGYTQTLRPGVKLTLSALVDGKS K V N L R P 0 1 2 0 0 1 0 2 0 1 2 0 0 0 0 2 2 0 1 2 0 0 16 0 1720.9108 A0A024QZT0;P45880;A0A0A0MR02;A0A024QZN9;B4DKM5 A0A024QZT0 248 263 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2 0.049815 40.066 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13094 20 13445 47602 71771 71771 1 VNNSSLIGVGYTQTLRPGVK AAKYQLDPTASISAKVNNSSLIGVGYTQTL LIGVGYTQTLRPGVKLTLSALVDGKSINAG K V N V K L 0 1 2 0 0 1 0 3 0 1 2 1 0 0 1 2 2 0 1 3 0 0 20 1 2102.1484 A0A024QZT0;P45880;A0A0A0MR02;A0A024QZN9;B4DKM5 A0A024QZT0 248 267 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2;3 1.7975E-50 194.67 8 2 0.58818 0.77855 74.449 10 Median 0.57741 0.75899 9.548 8 0 Median 2.584 4.5033 3.3963 2 0 Median 1384000000 785720000 598300000 1156500000 723350000 433190000 227480000 62368000 165110000 13095 20 13446 47603;47604;47605;47606;47607;47608;47609;47610;47611;47612 71772;71773;71774;71775;71776;71777;71778;71779;71780;71781;71782;71783;71784;71785;71786;71787;71788;71789;71790 71775 19 VNNTFSECLNLINEGCPK TTMAEEDEQRLFTEKVNNTFSECLNLINEG TFSECLNLINEGCPKEDILVTLNDLIKNIP K V N P K E 0 0 4 0 2 0 2 1 0 1 2 1 0 1 1 1 1 0 0 1 0 0 18 0 2107.9667 B2RMQ4;Q8WWK9 B2RMQ4 422 439 CKAP2 Cytoskeleton-associated protein 2 yes no 2 8.0702E-40 184.21 3 1.2822 1.6273 5.3211 3 Median 1.2822 1.6273 5.3211 3 0 Median NaN NaN NaN 0 0 Median 16601000 7155700 9445300 16601000 7155700 9445300 0 0 0 13096 745 13447 47613;47614;47615 71791;71792;71793;71794;71795;71796 71793 6 VNPAAALEELEK GKAKKALKEFEQLRKVNPAAALEELEKIEK LRKVNPAAALEELEKIEKARMMERMSLKHQ K V N E K I 3 0 1 0 0 0 3 0 0 0 2 1 0 0 1 0 0 0 0 1 0 0 12 0 1282.6769 Q9BVJ6;B4E343;X6RJY0 Q9BVJ6 274 285 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 6.1104E-16 173.24 3 2 0.97746 1.2421 5.2867 5 Median 0.99296 1.2421 3.0688 3 0 Median 0.75992 1.2059 8.8371 2 0 Median 163240000 89079000 74164000 84853000 44066000 40787000 78390000 45014000 33377000 13097 1719 13448 47616;47617;47618;47619;47620 71797;71798;71799;71800;71801;71802;71803 71798 7 VNPHSLPDPEVNEQSSSK KQEPHPGTSRQRQTRVNPHSLPDPEVNEQS HSLPDPEVNEQSSSKGMFRKKGGWKAGPEG R V N S K G 0 0 2 1 0 1 2 0 1 0 1 1 0 0 3 4 0 0 0 2 0 0 18 0 1962.9283 Q96F88;Q99575;E5RK39 Q96F88 61 78 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 3 4.8974E-18 157.83 3 2 0.36898 0.5064 15.145 4 Median 0.35521 0.45011 11.162 2 0 Median 0.37287 0.56083 8.9337 2 0 Median 58890000 44895000 13995000 36225000 28411000 7814100 22664000 16483000 6180800 13098 1685 13449 47621;47622;47623;47624;47625 71804;71805;71806;71807;71808;71809;71810;71811 71806 8 VNPIQGLASK KEWVAKQTKRMLDMKVNPIQGLASKWDYEK MLDMKVNPIQGLASKWDYEKNEWKK_____ K V N S K W 1 0 1 0 0 1 0 1 0 1 1 1 0 0 1 1 0 0 0 1 0 0 10 0 1025.5869 P13073 P13073 150 159 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes yes 2 0.0057143 60.828 1 1 0.67787 0.90914 22.542 2 Median 0.62305 0.77519 NaN 1 0 Median 0.73751 1.0662 NaN 1 0 Median 37262000 22759000 14503000 32133000 19680000 12454000 5129000 3079800 2049200 13099 1263 13450 47626;47627 71812;71813 71812 2 VNPQISDEKDEDEKEEK DLAAKRRPEEKEPEKVNPQISDEKDEDEKE PQISDEKDEDEKEEKRRKTTPKEPTEKKMA K V N E K R 0 0 1 3 0 1 5 0 0 1 0 3 0 0 1 1 0 0 0 1 0 0 17 2 2030.928 A0A024R7E3;P26358;Q59FP7;I6L9H2 A0A024R7E3 369 385 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 no no 3 4.1917E-06 106.82 3 2 0.44078 0.49428 60.255 5 Median 0.37605 0.44841 8.1581 3 0 Median 0.79387 1.3524 7.2265 2 0 Median 23851000 15157000 8693400 16579000 11331000 5248200 7271800 3826700 3445200 13100 176;1129 13451 47628;47629;47630;47631;47632 71814;71815;71816;71817;71818;71819;71820;71821;71822 71815 9 VNPTVFFDIAVDGEPLGR ______________________________ TVFFDIAVDGEPLGRVSFELFADKVPKTAE M V N G R V 1 1 1 2 0 0 1 2 0 1 1 0 0 2 2 0 1 0 0 3 0 0 18 0 1944.9945 B4DM82;V9HWF5;A8K486;P62937;F8WE65;C9J5S7;B2RE56;E5RIZ5 B4DM82 2 19 HEL-S-69p;PPIA Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 2 1.272E-24 164.93 3 0.44806 0.61156 16.328 2 Median 0.44806 0.61156 16.328 2 0 Median NaN NaN NaN 0 0 Median 12363000 7062200 5300600 12363000 7062200 5300600 0 0 0 13101 601 13452 47633;47634;47635 71823;71824;71825;71826 71823 4 VNQELAGYTGGDVSFIK SRNSSILPRRGALLKVNQELAGYTGGDVSF QELAGYTGGDVSFIKEDFELQLNKQLIFDS K V N I K E 1 0 1 1 0 1 1 3 0 1 1 1 0 1 0 1 1 0 1 2 0 0 17 0 1796.8945 Q9Y512;B4DN54;B3KUE6 Q9Y512 281 297 SAMM50 Sorting and assembly machinery component 50 homolog yes no 2 7.6038E-34 184.11 3 0.4821 0.61118 19.142 2 Median 0.4821 0.61118 19.142 2 0 Median NaN NaN NaN 0 0 Median 37663000 28655000 9007400 37663000 28655000 9007400 0 0 0 13102 1827 13453 47636;47637;47638 71827;71828;71829;71830;71831 71828 5 VNQPASFAIR ARRLTVMSLQESGLKVNQPASFAIRLNGAK ESGLKVNQPASFAIRLNGAKGKIDAKVHSP K V N I R L 2 1 1 0 0 1 0 0 0 1 0 0 0 1 1 1 0 0 0 1 0 0 10 0 1101.5931 O75369;A0A024R321;Q68CT4;E7EN95 O75369 2302 2311 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.0010758 88.177 3 0.75446 1.0292 12.537 2 Median 0.75446 1.0292 12.537 2 0 Median NaN NaN NaN 0 0 Median 11463000 6903200 4559600 11463000 6903200 4559600 0 0 0 13103 1199 13454 47639;47640;47641 71832;71833;71834 71834 3 VNQPASFAVSLNGAK ARRLTVSSLQESGLKVNQPASFAVSLNGAK VNQPASFAVSLNGAKGAIDAKVHSPSGALE K V N A K G 3 0 2 0 0 1 0 1 0 0 1 1 0 1 1 2 0 0 0 2 0 0 15 0 1501.7889 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;B4DTD5 P21333 2347 2361 FLNA;FLJ00119 Filamin-A yes no 2 2.2928E-05 107.53 4 0.99009 1.2401 9.339 3 Median 0.99009 1.2401 9.339 3 0 Median NaN NaN NaN 0 0 Median 29078000 17187000 11891000 29078000 17187000 11891000 0 0 0 13104 1287 13455 47642;47643;47644;47645 71835;71836;71837;71838;71839;71840;71841 71840 7 VNSININQGSITFAGGPGR HVIETLTKTALSANRVNSININQGSITFAG NINQGSITFAGGPGRDGTIDFTPGSELLIT R V N G R D 1 1 3 0 0 1 0 4 0 3 0 0 0 1 1 2 1 0 0 1 0 0 19 0 1900.9755 F5H6E2;B7Z3E5;O00159;D3DTH7 F5H6E2 989 1007 MYO1C Unconventional myosin-Ic yes no 2 1.4677E-83 233.52 4 2 0.80075 1.079 60.609 6 Median 0.66189 0.88954 19.168 4 0 Median 2.1436 3.0193 11.729 2 0 Median 114750000 61760000 52991000 94111000 54941000 39169000 20640000 6818200 13822000 13105 905 13456 47646;47647;47648;47649;47650;47651 71842;71843;71844;71845;71846;71847;71848;71849;71850;71851;71852 71844 11 VNTDLGNDLYFVK EEPIPETRIEVEIPKVNTDLGNDLYFVKLP PKVNTDLGNDLYFVKLPNFLSVEPRPFDPQ K V N V K L 0 0 2 2 0 0 0 1 0 0 2 1 0 1 0 0 1 0 1 2 0 0 13 0 1496.7511 B4DNM0;Q8WVC0 B4DNM0 343 355 LEO1 RNA polymerase-associated protein LEO1 yes no 2 2.4023E-08 175.33 3 1.2602 1.5764 NaN 1 Median 1.2602 1.5764 NaN 1 0 Median NaN NaN NaN 0 0 Median 48011000 40962000 7048600 48011000 40962000 7048600 0 0 0 13106 838 13457 47652;47653;47654 71853;71854;71855;71856 71854 4 VNTLIRPDGEK IKQAVKKLYDIDVAKVNTLIRPDGEKKAYV DVAKVNTLIRPDGEKKAYVRLAPDYDALDV K V N E K K 0 1 1 1 0 0 1 1 0 1 1 1 0 0 1 0 1 0 0 1 0 0 11 1 1240.6776 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7 H7BY10 126 136 RPL23A 60S ribosomal protein L23a yes no 2;3 7.5202E-58 266.39 12 11 0.79724 1.0544 25.435 22 Median 0.93554 1.2414 8.8912 12 0 Median 0.4433 0.75222 7.2607 10 0 Median 5980400000 3487800000 2492600000 4177000000 2260200000 1916800000 1803400000 1227600000 575830000 13107 658 13458 47655;47656;47657;47658;47659;47660;47661;47662;47663;47664;47665;47666;47667;47668;47669;47670;47671;47672;47673;47674;47675;47676;47677 71857;71858;71859;71860;71861;71862;71863;71864;71865;71866;71867;71868;71869;71870;71871;71872;71873;71874;71875;71876;71877;71878;71879;71880;71881;71882;71883;71884;71885;71886;71887;71888;71889;71890;71891;71892;71893;71894;71895;71896;71897;71898;71899 71871 43 VNTLIRPDGEKK IKQAVKKLYDIDVAKVNTLIRPDGEKKAYV VAKVNTLIRPDGEKKAYVRLAPDYDALDVA K V N K K A 0 1 1 1 0 0 1 1 0 1 1 2 0 0 1 0 1 0 0 1 0 0 12 2 1368.7725 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7 H7BY10 126 137 RPL23A 60S ribosomal protein L23a yes no 2;3 8.0581E-25 195.83 9 4 0.90284 1.0913 23.534 13 Median 0.94794 1.1495 9.059 9 0 Median 0.4123 0.74165 4.5279 4 0 Median 4230200000 2196200000 2034000000 4001900000 2036300000 1965600000 228330000 159880000 68456000 13108 658 13459 47678;47679;47680;47681;47682;47683;47684;47685;47686;47687;47688;47689;47690 71900;71901;71902;71903;71904;71905;71906;71907;71908;71909;71910;71911;71912;71913;71914;71915;71916;71917;71918;71919 71905 19 VNTLVAAANSLDNLCR TRLHNLAQFEGGESKVNTLVAAANSLDNLC NTLVAAANSLDNLCRMDPAWHPWL______ K V N C R M 3 1 3 1 1 0 0 0 0 0 3 0 0 0 0 1 1 0 0 2 0 0 16 0 1729.8781 Q59FH1;H0Y4W2;F2Z2U4;Q9Y4A5 Q59FH1 3563 3578 TRRAP Transformation/transcription domain-associated protein yes no 2 0.0025205 81.239 3 0.78057 1.0865 NaN 1 Median 0.78057 1.0865 NaN 1 0 Median NaN NaN NaN 0 0 Median 5163600 4094100 1069500 5163600 4094100 1069500 0 0 0 13109 1050 13460 47691;47692;47693 71920;71921;71922 71920 3 VNTPTTTVYR MFKYNKFKCRILNEKVNTPTTTVYRCGPLI ILNEKVNTPTTTVYRCGPLIDLCRGPHVRH K V N Y R C 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 4 0 1 2 0 0 10 0 1150.5982 Q5M7Z9;Q53GX7;P26639;B4DKZ9;B3KTN2;B2RDX5 Q5M7Z9 244 253 TARS Threonine--tRNA ligase, cytoplasmic yes no 2 0.021137 44.392 1 0.4452 0.59381 NaN 1 Median 0.4452 0.59381 NaN 1 0 Median NaN NaN NaN 0 0 Median 7033700 4746800 2286900 7033700 4746800 2286900 0 0 0 13110 1298 13461 47694 71923 71923 1 VNVAGLVLAGSADFK KVAETAVQLFISGDKVNVAGLVLAGSADFK VNVAGLVLAGSADFKTELSQSDM_______ K V N F K T 3 0 1 1 0 0 0 2 0 0 2 1 0 1 0 1 0 0 0 3 0 0 15 0 1459.8035 I3L492;B7Z7P8;P62495 I3L492 186 200 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 2 0.050224 69.03 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 612920 612920 0 612920 612920 0 0 0 0 13111 917 13462 47695 71924 71924 1 VNVDPEDLIPK RCLDLYLCPRQRKMRVNVDPEDLIPKLPRP RKMRVNVDPEDLIPKLPRPRDLQPFPTCQA R V N P K L 0 0 1 2 0 0 1 0 0 1 1 1 0 0 2 0 0 0 0 2 0 0 11 0 1237.6554 B2RDN4;Q14137;A8K3R2;B4DEN9;Q4G0D9;Q6DKJ9 B2RDN4 381 391 BOP1 Ribosome biogenesis protein BOP1 yes no 2 0.00054493 120.31 3 2 0.84487 1.1219 4.4701 5 Median 0.85705 1.0681 5.2242 3 0 Median 0.71897 1.1392 2.1734 2 0 Median 149170000 85015000 64159000 49787000 26347000 23440000 99387000 58668000 40719000 13112 738 13463 47696;47697;47698;47699;47700 71925;71926;71927;71928;71929;71930;71931 71926 7 VNVTVDYIRPASPATETVPAFSER FEAREFLRKKLIGKKVNVTVDYIRPASPAT PASPATETVPAFSERTCATVTIGGINIAEA K V N E R T 3 2 1 1 0 0 2 0 0 1 0 0 0 1 3 2 3 0 1 4 0 0 24 1 2618.334 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B4E299;B3KU67;I6TRR8 A0A140VK49 415 438 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 3 4.4212E-48 167.51 4 2 0.52763 0.70671 90.019 6 Median 0.5748 0.76076 11.699 4 0 Linear 2.4367 3.6245 3.5597 2 0 Median 104330000 56231000 48104000 74616000 49753000 24863000 29718000 6477600 23241000 13113 508 13464 47701;47702;47703;47704;47705;47706 71932;71933;71934;71935;71936;71937;71938;71939;71940;71941;71942;71943;71944 71934 13 VNVVSILGITGSVLAK TLCKAGIHSSNVGVRVNVVSILGITGSVLA NVVSILGITGSVLAKEDGTLETLKNIGCFL R V N A K E 1 0 1 0 0 0 0 2 0 2 2 1 0 0 0 2 1 0 0 4 0 0 16 0 1568.9501 Q7Z4Q2 Q7Z4Q2 557 572 HEATR3 HEAT repeat-containing protein 3 yes yes 2 0.0030799 89.231 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2757700 2757700 0 2757700 2757700 0 0 0 0 13114 1616 13465 47707;47708 71945;71946 71946 2 VPAELICLDPR RKQRQEWEVKALLEKVPAELICLDPRALAE LLEKVPAELICLDPRALAEVDVISLEQGKK K V P P R A 1 1 0 1 1 0 1 0 0 1 2 0 0 0 2 0 0 0 0 1 0 0 11 0 1281.6751 B0UZZ8;B4DNI0;O15213;B4DP15;A8K9A1;A8K806 B0UZZ8 509 519 C6orf11;WDR46 WD repeat-containing protein 46 yes no 2 0.0035012 91.584 3 0.95454 1.2716 0.90063 3 Plateau 0.95454 1.2716 0.90063 3 0 Plateau NaN NaN NaN 0 0 Median 50080000 25421000 24659000 50080000 25421000 24659000 0 0 0 13115 668 13466 47709;47710;47711 71947;71948;71949;71950 71950 4 VPAINVNDSVTK GVHNLYKMMANGILKVPAINVNDSVTKSKF ILKVPAINVNDSVTKSKFDNLYGCRESLID K V P T K S 1 0 2 1 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 3 0 0 12 0 1255.6772 Q1RMG2;P23526 Q1RMG2 49 60 AHCY Adenosylhomocysteinase yes no 2 4.6817E-05 128.51 2 2 4.7491 6.7108 132.87 3 Median 0.55505 0.72255 NaN 1 0 Median 4.9872 7.1941 9.8341 2 0 Median 24038000 10528000 13510000 12356000 8188200 4168300 11682000 2340000 9341800 13116 1294 13467 47712;47713;47714;47715 71951;71952;71953;71954;71955 71955 5 VPDEEENEESDNEKETEK YDSDPVKAWKEAQQKVPDEEENEESDNEKE EEENEESDNEKETEKSDSVTDSGPTFNYLL K V P E K S 0 0 2 2 0 0 8 0 0 0 0 2 0 0 1 1 1 0 0 1 0 0 18 1 2148.8819 P11388 P11388 1097 1114 TOP2A DNA topoisomerase 2-alpha yes yes 3 6.9579E-07 101.04 2 1 0.85077 1.0307 33.947 3 Median 0.90299 1.0903 7.9473 2 0 Median 0.41042 0.61055 NaN 1 0 Median 5945300 3772500 2172800 1925900 953820 972030 4019400 2818700 1200800 13117 1256 13468 47716;47717;47718 71956;71957;71958;71959 71958 4 VPDVQDGVR SIITYVSSLYDAMPRVPDVQDGVRANELQL YDAMPRVPDVQDGVRANELQLRWQEYRELV R V P V R A 0 1 0 2 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 3 0 0 9 0 983.50361 Q15149;E9PMV1 Q15149 402 410 PLEC Plectin yes no 2 0.00187 90.709 1 0.95436 1.2671 NaN 1 Median 0.95436 1.2671 NaN 1 0 Median NaN NaN NaN 0 0 Median 14057000 7698700 6358400 14057000 7698700 6358400 0 0 0 13118 1507 13469 47719 71960 71960 1 VPECLYTLPSLR SNLADVDLSCNDLTRVPECLYTLPSLRRLN LTRVPECLYTLPSLRRLNLSSNQITELSLC R V P L R R 0 1 0 0 1 0 1 0 0 0 3 0 0 0 2 1 1 0 1 1 0 0 12 0 1446.7541 B4DIX0;Q13045;Q59H95;J3QQU5;J3QQQ2;B4DNA8;J3KS54 B4DIX0 207 218 FLII Protein flightless-1 homolog yes no 2 0.012796 50.284 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3171600 3171600 0 3171600 3171600 0 0 0 0 13119 812 13470 47720;47721 71961;71962 71961 2 VPEDPTQCFLLFANQTEK TGITPMLQLIRAILKVPEDPTQCFLLFANQ DPTQCFLLFANQTEKDIILREDLEELQARY K V P E K D 1 0 1 1 1 2 2 0 0 0 2 1 0 2 2 0 2 0 0 1 0 0 18 0 2136.0198 H7C0R7;Q9UHQ9 H7C0R7 133 150 CYB5R1 NADH-cytochrome b5 reductase 1 yes no 2 7.0227E-05 115.68 3 0.46471 0.59469 NaN 1 Median 0.46471 0.59469 NaN 1 0 Median NaN NaN NaN 0 0 Median 5800200 4272300 1527900 5800200 4272300 1527900 0 0 0 13120 1122 13471 47722;47723;47724 71963;71964;71965;71966 71963 4 VPEIEVTVEGPNNNNPQTSAVR LQSPKRPRSPGSNSKVPEIEVTVEGPNNNN VEGPNNNNPQTSAVRTPTQTNGSNVPFKPR K V P V R T 1 1 4 0 0 1 3 1 0 1 0 0 0 0 3 1 2 0 0 4 0 0 22 0 2363.1717 X5D2J9;Q499G6;X5D939;X5DNP5;A8K9W7;B4DH52;X5DR09;P78347;B4DRA9 X5D2J9 640 661 GTF2I General transcription factor II-I yes no 2 4.5044E-40 187.16 4 0.52848 0.74911 12.413 2 Median 0.52848 0.74911 12.413 2 0 Median NaN NaN NaN 0 0 Median 12863000 10066000 2797300 12863000 10066000 2797300 0 0 0 13121 651 13472 47725;47726;47727;47728 71967;71968;71969;71970;71971 71969 5 VPELFANR DLYTLGCGEQGQLGRVPELFANRGGRQGLE EQGQLGRVPELFANRGGRQGLERLLVPKCV R V P N R G 1 1 1 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 8 0 944.50797 Q5T081;A0A0S2Z3I4;A0A0S2Z404;P18754;C9JW69;C9JRH2;C9JMJ4;C9J3R0;C9JQZ4 Q5T081 207 214 RCC1 Regulator of chromosome condensation yes no 2 0.037078 47.849 1 1 0.6106 0.89194 36.207 2 Median 0.86489 1.1522 NaN 1 0 Median 0.43108 0.69047 NaN 1 0 Median 61128000 37784000 23344000 26504000 13929000 12575000 34625000 23855000 10770000 13122 453 13473 47729;47730 71972;71973 71972 2 VPEPNENVGDAVQTK TPSSTPIPALSPPTKVPEPNENVGDAVQTK VPEPNENVGDAVQTKLIMLVDDFYYGRDGG K V P T K L 1 0 2 1 0 1 2 1 0 0 0 1 0 0 2 0 1 0 0 3 0 0 15 0 1595.7791 Q7Z3K3 Q7Z3K3 450 464 POGZ Pogo transposable element with ZNF domain yes yes 2 2.6105E-28 190.57 5 1 1.0623 1.4041 18.834 3 Median 1.0337 1.3389 6.7271 2 0 Median 1.2377 1.8357 NaN 1 0 Median 25148000 14805000 10343000 14436000 9529900 4905600 10713000 5275100 5437700 13123 1614 13474 47731;47732;47733;47734;47735;47736 71974;71975;71976;71977;71978;71979;71980;71981;71982;71983 71976 10 VPEWVDTVK VRALAAFLKKSGKLKVPEWVDTVKLAKHKE KSGKLKVPEWVDTVKLAKHKELAPYDENWF K V P V K L 0 0 0 1 0 0 1 0 0 0 0 1 0 0 1 0 1 1 0 3 0 0 9 0 1071.5601 B0ZBD0;Q8WVX7;P39019;M0R2L9;M0QXK4;M0QYF7;M0R140 B0ZBD0 30 38 RPS19 40S ribosomal protein S19 yes no 2 0.0071458 68.016 2 0.68474 1.0372 6.9753 2 Median NaN NaN NaN 0 0 Median 0.68474 1.0372 6.9753 2 0 Median 29852000 17030000 12822000 0 0 0 29852000 17030000 12822000 13124 669 13475 47737;47738 71984;71985 71985 2 VPFIHVGNQVVSELGPIVQFVK MSLVAEAFVSQIAGKVPFIHVGNQVVSELG NQVVSELGPIVQFVKAKGHSLSDGLEEVQK K V P V K A 0 0 1 0 0 2 1 2 1 2 1 1 0 2 2 1 0 0 0 6 0 0 22 0 2405.3471 C9JNK6;C9JAZ1;B7Z9F3;O75431 C9JNK6 16 37 MTX2 Metaxin-2 yes no 3 3.4356E-09 108.47 3 0.57792 0.73743 18.058 2 Median 0.57792 0.73743 18.058 2 0 Median NaN NaN NaN 0 0 Median 23051000 18733000 4317500 23051000 18733000 4317500 0 0 0 13125 920 13476 47739;47740;47741 71986;71987;71988;71989;71990 71989 5 VPFLEVNDPGEPSGLETLK GGDLEKCNRAPIYVRVPFLEVNDPGEPSGL EVNDPGEPSGLETLKDTPPPRLIKSHLPLA R V P L K D 0 0 1 1 0 0 3 2 0 0 3 1 0 1 3 1 1 0 0 2 0 0 19 0 2040.0415 Q2TAB3;Q1ET65;Q1ET64;Q1ET63;Q1ET62;Q1ET61;A0A0A6YYL2;P0DMN0;P0DMM9;H3BPL6 Q2TAB3 79 97 SULT1A4;ST1A5;SULT1A3 Sulfotransferase;Sulfotransferase 1A4;Sulfotransferase 1A3 yes no 2 0.00052364 62.162 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4310000 4310000 0 4310000 4310000 0 0 0 0 13126 410 13477 47742;47743 71991;71992 71992 2 VPFLSSLEGHIYLK LSLSSVGNTKFVLDKVPFLSSLEGHIYLKI KVPFLSSLEGHIYLKIKCQVNSSVEERGFL K V P L K I 0 0 0 0 0 0 1 1 1 1 3 1 0 1 1 2 0 0 1 1 0 0 14 0 1601.8817 B4DSL6;A8K5D9;A0A024RA49;Q9NQW6;H7C1C2;H7C3S1 B4DSL6 839 852 ANLN Actin-binding protein anillin yes no 3 0.0022061 72.681 1 0.43371 0.56132 NaN 1 Median 0.43371 0.56132 NaN 1 0 Median NaN NaN NaN 0 0 Median 9210600 5015300 4195200 9210600 5015300 4195200 0 0 0 13127 235 13478 47744 71993;71994 71993 2 VPFPLTLR GGWINMTFSGFVTTKVPFPLTLRFKPMLQQ SGFVTTKVPFPLTLRFKPMLQQGIELLTLD K V P L R F 0 1 0 0 0 0 0 0 0 0 2 0 0 1 2 0 1 0 0 1 0 0 8 0 941.56984 Q9P0I2;C9JLM9 Q9P0I2 140 147 EMC3 ER membrane protein complex subunit 3 yes no 2 0.021596 87.754 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3904600 3904600 0 3904600 3904600 0 0 0 0 13128 1776 13479 47745;47746 71995;71996 71996 2 VPFSLLR ______________________________ ______________________________ R V P L R G 0 1 0 0 0 0 0 0 0 0 2 0 0 1 1 1 0 0 0 1 0 0 7 0 830.50142 V9HW43;P04792;B4DL87;F8WE04 V9HW43 6 12 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 2 0.0077944 92.191 2 2 3.475 4.9386 5.2443 2 Median NaN NaN NaN 0 0 Median 3.475 4.9386 5.2443 2 0 Median 20582000 6113000 14469000 2451800 2451800 0 18130000 3661300 14469000 13129 1232 13480 47747;47748;47749;47750 71997;71998;71999;72000;72001 71998 5 VPGFYQFFYSSDFEQK VSNFLLSHEYLNMDKVPGFYQFFYSSDFEQ PGFYQFFYSSDFEQKTEQKWVFGVLRQGIR K V P Q K T 0 0 0 1 0 2 1 1 0 0 0 1 0 4 1 2 0 0 2 1 0 0 16 0 1987.8992 O60287 O60287 1767 1782 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.0050636 72.958 1 0.99731 1.2979 NaN 1 Median 0.99731 1.2979 NaN 1 0 Median NaN NaN NaN 0 0 Median 1815300 1035100 780290 1815300 1035100 780290 0 0 0 13130 1190 13481 47751 72002 72002 1 VPGVTDCVAEIQK VPEDEWQCEVCVAHKVPGVTDCVAEIQKNK HKVPGVTDCVAEIQKNKPYIRHEPIGYDRS K V P Q K N 1 0 0 1 1 1 1 1 0 1 0 1 0 0 1 0 1 0 0 3 0 0 13 0 1414.7126 E7ETD6;Q12830;F5GXF5;A0A0A0MR81;B4DDK2;B4DM40 E7ETD6 300 312 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.011128 94.82 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1433400 1433400 0 1433400 1433400 0 0 0 0 13131 1015 13482 47752;47753 72003;72004 72003 2 VPLDVACAR QLSTGGIVDPSKSHRVPLDVACARGCLDEE PSKSHRVPLDVACARGCLDEETSRALSAPR R V P A R G 2 1 0 1 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 2 0 0 9 0 999.51715 Q15149;D3DWL0 Q15149 3289 3297 PLEC;PLEC1 Plectin yes no 2 0.024802 52.482 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6813900 0 6813900 6813900 0 6813900 0 0 0 13132 1507 13483 47754 72005 72005 1 VPLEVQEADEAK QRLRERRAASGYPVKVPLEVQEADEAKLQQ PVKVPLEVQEADEAKLQQTEAELRKVDEAI K V P A K L 2 0 0 1 0 1 3 0 0 0 1 1 0 0 1 0 0 0 0 2 0 0 12 0 1326.6667 A0A024RCN6;P26640;A0A140T936;B4DT32 A0A024RCN6 1231 1242 VARS Valine--tRNA ligase yes no 2 0.025243 48.284 1 0.38717 0.49297 NaN 1 Median 0.38717 0.49297 NaN 1 0 Median NaN NaN NaN 0 0 Median 13203000 10248000 2954700 13203000 10248000 2954700 0 0 0 13133 297 13484 47755 72006 72006 1 VPLHQVPYAVK ETELTDQAWLPAGVRVPLHQVPYAVKGCFR AGVRVPLHQVPYAVKGCFRFLPPAQVTVVG R V P V K G 1 0 0 0 0 1 0 0 1 0 1 1 0 0 2 0 0 0 1 3 0 0 11 0 1249.7183 Q9H6R4;A0A0A0MRW6 Q9H6R4 139 149 NOL6 Nucleolar protein 6 yes no 2;3 0.0022819 85.862 4 1 0.90977 1.2442 9.2059 4 Median 0.9421 1.1801 9.8288 3 0 Median 0.87743 1.3118 NaN 1 0 Median 77381000 38114000 39268000 65242000 31649000 33593000 12139000 6464500 5675000 13134 1738 13485 47756;47757;47758;47759;47760 72007;72008;72009;72010;72011;72012;72013 72010 7 VPLINELESAIHQLYK MRGYVQDLLECFSEKVPLINELESAIHQLY PLINELESAIHQLYKQRASRLVQRRQDDIK K V P Y K Q 1 0 1 0 0 1 2 0 1 2 3 1 0 0 1 1 0 0 1 1 0 0 16 0 1866.0251 Q9Y5B6 Q9Y5B6 462 477 PAXBP1 PAX3- and PAX7-binding protein 1 yes yes 3 0.018235 67.416 2 0.44619 0.5715 NaN 1 Median 0.44619 0.5715 NaN 1 0 Median NaN NaN NaN 0 0 Median 3823500 2451100 1372400 3823500 2451100 1372400 0 0 0 13135 1828 13486 47761;47762 72014;72015 72014 2 VPLLLHQK CPGETVVAEDPAGLKVPLLLHQKQALAWLL EDPAGLKVPLLLHQKQALAWLLWRESQKPQ K V P Q K Q 0 0 0 0 0 1 0 0 1 0 3 1 0 0 1 0 0 0 0 1 0 0 8 0 946.59639 A0A024R0F1;Q9UNY4 A0A024R0F1 568 575 TTF2 Transcription termination factor 2 yes no 2 0.031653 69.383 2 1 0.95784 1.2556 11.041 3 Median 0.9525 1.1843 8.2695 2 0 Median 0.95784 1.3929 NaN 1 0 Median 33082000 15924000 17158000 27740000 13378000 14362000 5342600 2546200 2796400 13136 33 13487 47763;47764;47765 72016;72017;72018;72019 72019 4 VPLQTLHMTSENQEK ISKGESRPKWKPKAKVPLQTLHMTSENQEK VPLQTLHMTSENQEKVKALLRDLQEQDADA K V P E K V 0 0 1 0 0 2 2 0 1 0 2 1 1 0 1 1 2 0 0 1 0 0 15 0 1753.8669 Q6P158;B4DKW2 Q6P158 96 110 DHX57 Putative ATP-dependent RNA helicase DHX57 yes no 3 0.036086 18.096 3 0.73691 0.97399 4.4534 3 Median 0.73691 0.97399 4.4534 3 0 Median NaN NaN NaN 0 0 Median 664070000 389420000 274650000 664070000 389420000 274650000 0 0 0 13137 1589 13488 47766;47767;47768 72020;72021;72022 72020 3 VPLSEFDFSWSK RPEELGFLRYLKQSKVPLSEFDFSWSKISD QSKVPLSEFDFSWSKISDIQSQLEKLIEKN K V P S K I 0 0 0 1 0 0 1 0 0 0 1 1 0 2 1 3 0 1 0 1 0 0 12 0 1440.6925 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254 Q4ZG72 422 433 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 0.0016008 70.942 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32439000 32439000 0 0 0 0 32439000 32439000 0 13138 242 13489 47769;47770 72023;72024 72024 2 VPLTSNDDEDEDK RISKQCKLMRLPFARVPLTSNDDEDEDKEK ARVPLTSNDDEDEDKEKMQCDNNIKSKTLP R V P D K E 0 0 1 4 0 0 2 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 13 0 1475.6264 Q562F6;B7Z7S9 Q562F6 159 171 SGOL2 Shugoshin-like 2 yes no 2 0.00014009 123.01 3 2 0.86038 1.1262 7.6457 5 Median 0.86269 1.0984 1.6398 3 0 Median 0.83932 1.259 5.0559 2 0 Median 39129000 21471000 17658000 16438000 9072500 7365800 22690000 12398000 10292000 13139 1546 13490 47771;47772;47773;47774;47775 72025;72026;72027;72028;72029;72030;72031;72032;72033;72034 72025 10 VPLTSNDDEDEDKEK RISKQCKLMRLPFARVPLTSNDDEDEDKEK VPLTSNDDEDEDKEKMQCDNNIKSKTLPDI R V P E K M 0 0 1 4 0 0 3 0 0 0 1 2 0 0 1 1 1 0 0 1 0 0 15 1 1732.7639 Q562F6;B7Z7S9 Q562F6 159 173 SGOL2 Shugoshin-like 2 yes no 3 0.00026951 93.243 2 1 0.82589 1.2009 23.574 3 Median 0.79487 0.9853 29.16 2 0 Median 0.82589 1.2009 NaN 1 0 Median 19009000 10635000 8374200 15356000 8640400 6715400 3653000 1994300 1658700 13140 1546 13491 47776;47777;47778 72035;72036;72037;72038;72039 72035 5 VPPAINQFTQALDR IRLQRQRAILYKRLKVPPAINQFTQALDRQ KVPPAINQFTQALDRQTATQLLKLAHKYRP K V P D R Q 2 1 1 1 0 2 0 0 0 1 1 0 0 1 2 0 1 0 0 1 0 0 14 0 1568.8311 P62424;Q5T8U3 P62424 76 89 RPL7A 60S ribosomal protein L7a yes no 2 8.3291E-15 155.48 7 2 0.72126 0.99889 7.1058 7 Median 0.73335 1.0079 2.1524 5 0 Median 0.52963 0.87593 1.6507 2 0 Median 2857500000 1716400000 1141100000 2371100000 1394900000 976210000 486390000 321470000 164930000 13141 1411 13492 47779;47780;47781;47782;47783;47784;47785;47786;47787 72040;72041;72042;72043;72044;72045;72046;72047;72048;72049;72050;72051;72052;72053;72054;72055;72056;72057;72058 72049 18 VPPAINQFTQALDRQTATQLLK IRLQRQRAILYKRLKVPPAINQFTQALDRQ FTQALDRQTATQLLKLAHKYRPETKQEKKQ K V P L K L 3 1 1 1 0 4 0 0 0 1 3 1 0 1 2 0 3 0 0 1 0 0 22 1 2452.3438 P62424;Q5T8U3 P62424 76 97 RPL7A 60S ribosomal protein L7a yes no 3 0.015084 21.006 2 0.76773 0.98158 10.932 2 Median 0.76773 0.98158 10.932 2 0 Median NaN NaN NaN 0 0 Median 11547000 7269600 4277600 11547000 7269600 4277600 0 0 0 13142 1411 13493 47788;47789 72059;72060;72061;72062 72061 4 VPPFVDLNVNSNEGK NNLNLPQVALSFGFKVPPFVDLNVNSNEGK VPPFVDLNVNSNEGKQKKRGGGGGFGYQKT K V P G K Q 0 0 3 1 0 0 1 1 0 0 1 1 0 1 2 1 0 0 0 3 0 0 15 0 1627.8206 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254 Q4ZG72 493 507 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 1.6262E-10 121.02 3 2 1.0053 1.2857 11.776 5 Median 1.0757 1.3718 3.9209 3 0 Median 0.69169 1.098 5.4375 2 0 Median 292540000 156710000 135830000 124750000 58381000 66370000 167790000 98328000 69459000 13143 242 13494 47790;47791;47792;47793;47794 72063;72064;72065;72066;72067;72068;72069;72070;72071;72072;72073 72073 11 VPPGYHPLDVEK IYQSLEGAVQAGQLKVPPGYHPLDVEKEWG QLKVPPGYHPLDVEKEWGKLHVAILEREKQ K V P E K E 0 0 0 1 0 0 1 1 1 0 1 1 0 0 3 0 0 0 1 2 0 0 12 0 1349.698 Q15149;E9PMV1 Q15149 494 505 PLEC Plectin yes no 3 0.021196 75.788 2 0.82646 1.046 14.821 2 Median 0.82646 1.046 14.821 2 0 Median NaN NaN NaN 0 0 Median 11757000 6721100 5035400 11757000 6721100 5035400 0 0 0 13144 1507 13495 47795;47796 72074;72075 72075 2 VPPPPPIAR FQRDYYDRMYSYPARVPPPPPIARAVVPSK YSYPARVPPPPPIARAVVPSKRQRVSGNTS R V P A R A 1 1 0 0 0 0 0 0 0 1 0 0 0 0 5 0 0 0 0 1 0 0 9 0 942.56509 B2R5W2;G3V4C1;G3V4W0;B4DY08;B3KX96;B2R603;G3V2Q1;P07910;G3V576;A8K9A4;G3V2D6;D3DPI2;G3V555;G3V575;B4DQQ2 B2R5W2 130 138 HNRNPC;hCG_1641229 Heterogeneous nuclear ribonucleoproteins C1/C2 no no 2 0.0062081 97.473 5 2 0.63932 0.88398 21.141 6 Median 0.63651 0.87115 2.0699 4 0 Median 0.83077 1.3091 0.52655 2 0 Median 393520000 246130000 147390000 328280000 210160000 118120000 65238000 35968000 29269000 13145 694 13496 47797;47798;47799;47800;47801;47802;47803 72076;72077;72078;72079;72080;72081;72082;72083;72084;72085;72086;72087;72088;72089;72090;72091;72092 72076 17 VPPSLLCEINTNAR SDGFIKMWKLKQDKKVPPSLLCEINTNARL KVPPSLLCEINTNARLTCLGVWLDKVADMK K V P A R L 1 1 2 0 1 0 1 0 0 1 2 0 0 0 2 1 1 0 0 1 0 0 14 0 1582.8137 A0A0S2Z5C3;Q9NWT1 A0A0S2Z5C3 282 295 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes no 2 0.0031293 43.544 1 1 0.64745 0.85504 NaN 1 Median NaN NaN NaN 0 0 Median 0.64745 0.85504 NaN 1 0 Median 6740300 2412200 4328000 2274800 0 2274800 4465400 2412200 2053200 13146 478 13497 47804;47805 72093;72094;72095 72094 3 VPQVSTPTLVEVSR EYGFQNALIVRYTRKVPQVSTPTLVEVSRS KVPQVSTPTLVEVSRSLGKVGTRCCTKPES K V P S R S 0 1 0 0 0 1 1 0 0 0 1 0 0 0 2 2 2 0 0 4 0 0 14 0 1510.8355 CON__P02769;A0A087WWT3;C9JKR2;H0YA55;D6RHD5;B7WNR0;B4DPR2;F6KPG5;A0A0C4DGB6;A8K9P0;Q56G89;CON__P02768-1;B2RBS8;B4DPP6;P02768 CON__P02769 438 451 ALB Serum albumin yes no 2 0.00030481 66.267 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2955800 2955800 0 2955800 2955800 0 0 0 0 + 13147 952 13498 47806 72096 72096 1 VPSENVLGEVGSGFK IKASNTAEVFFDGVRVPSENVLGEVGSGFK VPSENVLGEVGSGFKVAMHILNNGRFGMAA R V P F K V 0 0 1 0 0 0 2 3 0 0 1 1 0 1 1 2 0 0 0 3 0 0 15 0 1517.7726 B3KPA6;Q53HR2;B4DEA8;P49748;B3KPX1;A0A077H1I5 B3KPA6 241 255 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.0054539 91.093 2 2 1.2117 1.6523 36.907 4 Median 0.91183 1.1667 22.39 2 0 Median 1.4127 2.1121 7.8931 2 0 Median 32569000 15520000 17049000 14157000 7336500 6820200 18412000 8183800 10228000 13148 763 13499 47807;47808;47809;47810 72097;72098;72099;72100 72097 3 VPSFAAGR FVSPKEEVKLEAHIRVPSFAAGRVIGKGGK KLEAHIRVPSFAAGRVIGKGGKTVNELQNL R V P G R V 2 1 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 1 0 0 8 0 803.42899 O00425 O00425 494 501 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 0.033656 49.65 1 0.56148 0.77235 NaN 1 Median 0.56148 0.77235 NaN 1 0 Median NaN NaN NaN 0 0 Median 10090000 6897800 3192200 10090000 6897800 3192200 0 0 0 13149 1167 13500 47811 72101 72101 1 VPSLTTVPQTQGQTTAQK RGLGATTKITTSHPRVPSLTTVPQTQGQTT LTTVPQTQGQTTAQKVSKKTGPRCSTAIAT R V P Q K V 1 0 0 0 0 4 0 1 0 0 1 1 0 0 2 1 5 0 0 2 0 0 18 0 1883.9953 A0A024RCS7;Q9BW19;B4E063 A0A024RCS7 69 86 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 2.0818E-40 214.42 4 2 0.85108 1.0724 54.931 6 Median 0.78933 0.9882 7.7892 4 0 Median 1.9901 2.9118 4.1556 2 0 Median 43660000 21638000 22022000 28651000 15763000 12889000 15009000 5875700 9133600 13150 303 13501 47812;47813;47814;47815;47816;47817 72102;72103;72104;72105;72106;72107;72108;72109;72110;72111;72112 72105 11 VPSPPDEHQEAENAVSSGNR NHEKQESQDLRATAKVPSPPDEHQEAENAV DEHQEAENAVSSGNRDSKVPSEGKKSLYTD K V P N R D 2 1 2 1 0 1 3 1 1 0 0 0 0 0 3 3 0 0 0 2 0 0 20 0 2118.9566 Q9BXS6;A8K4B4 Q9BXS6 133 152 NUSAP1 Nucleolar and spindle-associated protein 1 yes no 3 0.002268 29.136 2 0.31618 0.41777 3.5049 2 Median NaN NaN NaN 0 0 Median 0.31618 0.41777 3.5049 2 0 Median 10447000 7095000 3351700 0 0 0 10447000 7095000 3351700 13151 1723 13502 47818;47819 72113;72114;72115 72114 3 VPSSLAYSLK TSSAVWNSPPLQGARVPSSLAYSLKKH___ LQGARVPSSLAYSLKKH_____________ R V P L K K 1 0 0 0 0 0 0 0 0 0 2 1 0 0 1 3 0 0 1 1 0 0 10 0 1063.5914 Q9NQS7 Q9NQS7 907 916 INCENP Inner centromere protein yes yes 2 0.0044318 96.034 4 2 0.96114 1.2402 4.6906 5 Median 1.0225 1.3387 5.2929 3 0 Plateau 0.76166 1.2117 3.2879 2 0 Median 428860000 222500000 206360000 274870000 135450000 139420000 153990000 87050000 66939000 13152 1752 13503 47820;47821;47822;47823;47824;47825 72116;72117;72118;72119;72120;72121;72122;72123 72119 8 VPSVPETELTDQAWLPAGVR RIDAFLREVNQRVVRVPSVPETELTDQAWL ETELTDQAWLPAGVRVPLHQVPYAVKGCFR R V P V R V 2 1 0 1 0 1 2 1 0 0 2 0 0 0 3 1 2 1 0 3 0 0 20 0 2164.1164 Q9H6R4;A0A0A0MRW6 Q9H6R4 119 138 NOL6 Nucleolar protein 6 yes no 2 5.4803E-05 53.754 2 0.80073 1.2381 10.632 2 Median NaN NaN NaN 0 0 Median 0.80073 1.2381 10.632 2 0 Median 50598000 29295000 21302000 0 0 0 50598000 29295000 21302000 13153 1738 13504 47826;47827 72124;72125;72126 72126 3 VPSVSSSALVSSLHLLK LQAIERYMKQAIVDKVPSVSSSALVSSLHL SVSSSALVSSLHLLKCSFDVVKRWVNEAQE K V P L K C 1 0 0 0 0 0 0 0 1 0 4 1 0 0 1 6 0 0 0 3 0 0 17 0 1722.988 Q9Y678 Q9Y678 152 168 COPG1 Coatomer subunit gamma-1 yes yes 3 0.0013791 76.158 3 0.46595 0.58768 16.834 3 Median 0.46595 0.58768 16.834 3 0 Median NaN NaN NaN 0 0 Median 25081000 16959000 8121800 25081000 16959000 8121800 0 0 0 13154 1832 13505 47828;47829;47830 72127;72128;72129;72130;72131 72127 5 VPTANVSVVDLTCR VIPELNGKLTGMAFRVPTANVSVVDLTCRL RVPTANVSVVDLTCRLEKPAKYDDIKKVVK R V P C R L 1 1 1 1 1 0 0 0 0 0 1 0 0 0 1 1 2 0 0 4 0 0 14 0 1529.7872 V9HVZ4;P04406;Q2TSD0;E7EUT5;Q0QET7;A4UCT1;Q5ZEY3 V9HVZ4 235 248 HEL-S-162eP;GAPDH;GAPD Glyceraldehyde-3-phosphate dehydrogenase yes no 2 9.0514E-33 196.02 3 1 0.62381 0.85259 99.027 4 Median 0.6067 0.82545 7.6031 3 0 Median 3.7178 5.9147 NaN 1 0 Median 153650000 68331000 85323000 103720000 56964000 46758000 49932000 11367000 38565000 13155 1231 13506 47831;47832;47833;47834 72132;72133;72134;72135;72136 72134 5 VPTANVSVVDLTCRLEK VIPELNGKLTGMAFRVPTANVSVVDLTCRL TANVSVVDLTCRLEKPAKYDDIKKVVKQAS R V P E K P 1 1 1 1 1 0 1 0 0 0 2 1 0 0 1 1 2 0 0 4 0 0 17 1 1900.0088 V9HVZ4;P04406;Q2TSD0;E7EUT5;Q0QET7;A4UCT1;Q5ZEY3 V9HVZ4 235 251 HEL-S-162eP;GAPDH;GAPD Glyceraldehyde-3-phosphate dehydrogenase yes no 3 0.014419 49.535 1 0.81865 1.1112 NaN 1 Median 0.81865 1.1112 NaN 1 0 Median NaN NaN NaN 0 0 Median 4890700 2687200 2203500 4890700 2687200 2203500 0 0 0 13156 1231 13507 47835 72137 72137 1 VPTEPPATSVAAR LQSSADTSSSRPGSRVPTEPPATSVAARSS SRVPTEPPATSVAARSSSLPSGRWGRPEAH R V P A R S 3 1 0 0 0 0 1 0 0 0 0 0 0 0 3 1 2 0 0 2 0 0 13 0 1294.6881 Q92610 Q92610 942 954 ZNF592 Zinc finger protein 592 yes yes 2 0.012563 44.425 2 1 0.97041 1.2487 NaN 1 Median NaN NaN NaN 0 0 Median 0.97041 1.2487 NaN 1 0 Median 4845000 3220300 1624800 1689500 1689500 0 3155600 1530800 1624800 13157 1672 13508 47836;47837;47838 72138;72139;72140 72140 3 VPTLAVPAISLPDDVR SAEASEMPARTAPARVPTLAVPAISLPDDV PTLAVPAISLPDDVRRRLKDLERDSLTEKE R V P V R R 2 1 0 2 0 0 0 0 0 1 2 0 0 0 3 1 1 0 0 3 0 0 16 0 1661.9352 A0A024R7E3;P26358;K7EJL0;K7EMU8;K7EIZ6 A0A024R7E3 72 87 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 2 2.103E-13 147.33 4 1 0.43909 0.61505 37.512 5 Median 0.42165 0.58457 15.902 4 0 Median 0.87264 1.3286 NaN 1 0 Median 49922000 30530000 19392000 30155000 20477000 9677600 19767000 10053000 9714400 13158 176 13509 47839;47840;47841;47842;47843 72141;72142;72143;72144;72145;72146;72147 72142 7 VPTLAVPAISLPDDVRR SAEASEMPARTAPARVPTLAVPAISLPDDV TLAVPAISLPDDVRRRLKDLERDSLTEKEC R V P R R R 2 2 0 2 0 0 0 0 0 1 2 0 0 0 3 1 1 0 0 3 0 0 17 1 1818.0363 A0A024R7E3;P26358;K7EJL0;K7EMU8;K7EIZ6 A0A024R7E3 72 88 DNMT1 DNA (cytosine-5)-methyltransferase;DNA (cytosine-5)-methyltransferase 1 yes no 3 9.8502E-06 95.822 2 2 0.86623 1.2666 27.39 3 Plateau 0.5591 0.77341 NaN 1 0 Median 0.83766 1.2413 2.8517 2 0 Median 34587000 16495000 18091000 6497400 2470200 4027200 28089000 14025000 14064000 13159 176 13510 47844;47845;47846;47847 72148;72149;72150;72151;72152;72153;72154 72153 7 VPTPIQR LSYPVFKGIMKKGYKVPTPIQRKTIPVILD GIMKKGYKVPTPIQRKTIPVILDGKDVVAM K V P Q R K 0 1 0 0 0 1 0 0 0 1 0 0 0 0 2 0 1 0 0 1 0 0 7 0 809.47594 Q8TDD1;F8VRX4 Q8TDD1 118 124 DDX54 ATP-dependent RNA helicase DDX54 yes no 2 0.029072 94.163 3 0.94136 1.2704 14.211 2 Median 0.94136 1.2704 14.211 2 0 Median NaN NaN NaN 0 0 Median 65824000 36600000 29224000 65824000 36600000 29224000 0 0 0 13160 1658 13511 47848;47849;47850 72155;72156;72157 72157 3 VPTTEKPTVTVNFR SVAYANMCRCLMALKVPTTEKPTVTVNFRK KVPTTEKPTVTVNFRKLLLNRCQKEFEKDK K V P F R K 0 1 1 0 0 0 1 0 0 0 0 1 0 1 2 0 4 0 0 3 0 0 14 1 1587.8621 E7EX73;B4DSI9;E9PGM1;E7EUU4;B4DGF1;B2RU10;B2RU06;Q4LE58;Q04637;C9JF13;C9J6B6;C9K073 E7EX73 664 677 EIF4G1;EIF4G1 variant protein Eukaryotic translation initiation factor 4 gamma 1 yes no 3 0.0025544 54.598 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4973000 0 4973000 0 0 0 4973000 0 4973000 13161 747 13512 47851 72158 72158 1 VPVDEFDGK EHLNCTISQVEPDIKVPVDEFDGKVTYGQK VEPDIKVPVDEFDGKVTYGQKRAAGGGSYK K V P G K V 0 0 0 2 0 0 1 1 0 0 0 1 0 1 1 0 0 0 0 2 0 0 9 0 1004.4815 F1T0B3;A0A087X2G1;A3RJH1;Q92499 F1T0B3 598 606 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.044663 40.724 1 0.79369 1.0072 NaN 1 Median 0.79369 1.0072 NaN 1 0 Median NaN NaN NaN 0 0 Median 9438600 5209700 4228900 9438600 5209700 4228900 0 0 0 13162 378 13513 47852 72159 72159 1 VPVDVAYQR QIATGGIIDPVHSHRVPVDVAYQRGYFSEE PVHSHRVPVDVAYQRGYFSEEMNRVLADPS R V P Q R G 1 1 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 3 0 0 9 0 1045.5556 Q15149;D3DWL0;A0A087X1U6;A0A075B730 Q15149 3620 3628 PLEC;PLEC1;EPPK1 Plectin no no 2 0.013824 98.458 1 2 2.1181 2.9608 NaN 1 Median NaN NaN NaN 0 0 Median 2.1181 2.9608 NaN 1 0 Median 11959000 5787700 6170900 0 0 0 11959000 5787700 6170900 13163 1507;373 13514 47853;47854;47855 72160;72161;72162 72160 3 VPVDVAYR QIATGGVIDPVHSHRVPVDVAYRRGYFDEE DPVHSHRVPVDVAYRRGYFDEEMNRVLADP R V P Y R R 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 3 0 0 8 0 917.49707 Q15149;D3DWL0;P58107;A0A087X1U6;A0A075B730 Q15149 2961 2968 PLEC;PLEC1;EPPK1 Plectin;Epiplakin no no 2 0.011812 99.375 4 0.59123 0.81675 4.3726 4 Median 0.59123 0.81675 4.3726 4 0 Median NaN NaN NaN 0 0 Median 265920000 165010000 100900000 265920000 165010000 100900000 0 0 0 13164 1507;373;1386 13515 47856;47857;47858;47859 72163;72164;72165;72166;72167;72168;72169 72163 7 VPVDVAYRR QIATGGVIDPVHSHRVPVDVAYRRGYFDEE PVHSHRVPVDVAYRRGYFDEEMNRVLADPS R V P R R G 1 2 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 3 0 0 9 1 1073.5982 Q15149;D3DWL0;P58107;A0A087X1U6;A0A075B730 Q15149 2961 2969 PLEC;PLEC1;EPPK1 Plectin;Epiplakin no no 3 0.00054786 107.66 3 0.69351 0.9395 29.064 2 Median 0.69351 0.9395 29.064 2 0 Median NaN NaN NaN 0 0 Median 28242000 19127000 9115600 28242000 19127000 9115600 0 0 0 13165 1507;373;1386 13516 47860;47861;47862 72170;72171;72172;72173 72171 4 VPVHDVTDASK NVTYGGHQVPGSPFKVPVHDVTDASKVKCS SPFKVPVHDVTDASKVKCSGPGLSPGMVRA K V P S K V 1 0 0 2 0 0 0 0 1 0 0 1 0 0 1 1 1 0 0 3 0 0 11 0 1166.5932 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1440 1450 FLNA;FLJ00119 Filamin-A yes no 2;3 1.6348E-06 115.78 6 0.88835 1.0883 11.985 6 Median 0.88835 1.0883 11.985 6 0 Median NaN NaN NaN 0 0 Median 103930000 53659000 50270000 103930000 53659000 50270000 0 0 0 13166 1287 13517 47863;47864;47865;47866;47867;47868 72174;72175;72176;72177;72178;72179;72180;72181;72182 72178 9 VPVLDEGLTSVETYTPAIR APSVYEGKIFTQKSKVPVLDEGLTSVETYT DEGLTSVETYTPAIRANDNKSMADVLGDGG K V P I R A 1 1 0 1 0 0 2 1 0 1 2 0 0 0 2 1 3 0 1 3 0 0 19 0 2059.0837 Q8WYP5;B3KVE5;B3KTD2 Q8WYP5 1428 1446 AHCTF1 Protein ELYS yes no 2 9.1174E-51 198.33 4 1 0.79808 1.0653 7.736 5 Median 0.80194 1.0717 3.4672 4 0 Median 0.57537 0.90579 NaN 1 0 Median 93408000 58358000 35049000 54187000 31491000 22697000 39220000 26868000 12353000 13167 1670 13518 47869;47870;47871;47872;47873 72183;72184;72185;72186;72187;72188;72189;72190 72184 8 VPVLQLDSGNYLFSTSAICR VGPEDCVVPFLTRPKVPVLQLDSGNYLFST LDSGNYLFSTSAICRYFFLLSGWEQDDLTN K V P C R Y 1 1 1 1 1 1 0 1 0 1 3 0 0 1 1 3 1 0 1 2 0 0 20 0 2239.1307 A8K492;P56192;A0A024RBA2;F5H2V6;F8VS26;F8W0M7;F8W0S4;F8VZZ9 A8K492 48 67 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 1.0655E-24 160.8 3 0.67007 0.93608 19.277 3 Median 0.67007 0.93608 19.277 3 0 Median NaN NaN NaN 0 0 Median 9286400 6213500 3072900 9286400 6213500 3072900 0 0 0 13168 602 13519 47874;47875;47876 72191;72192;72193;72194;72195;72196 72192 6 VPVSVNLLSK LLPSLIGRHFYQRKKVPVSVNLLSKNLSRE YQRKKVPVSVNLLSKNLSREINDCIGGTVL K V P S K N 0 0 1 0 0 0 0 0 0 0 2 1 0 0 1 2 0 0 0 3 0 0 10 0 1054.6386 O76021;Q32Q62;J3QSV6;A0PJ61;A0PJ87;I3L3C4 O76021 179 188 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 2.1642E-16 166.07 4 2 0.66505 0.85042 23.141 6 Median 0.6937 0.88917 7.078 4 0 Median 0.36596 0.58011 3.7967 2 0 Median 492220000 306710000 185510000 299220000 171370000 127860000 193000000 135350000 57650000 13169 1210 13520 47877;47878;47879;47880;47881;47882 72197;72198;72199;72200;72201;72202;72203;72204;72205;72206 72202 10 VPYFNAPVYLENK CEDDIVCKCTTDENKVPYFNAPVYLENKEQ NKVPYFNAPVYLENKEQIGKVDEIFGQLRD K V P N K E 1 0 2 0 0 0 1 0 0 0 1 1 0 1 2 0 0 0 2 2 0 0 13 0 1552.7926 A0A024RDJ3;Q9NY12 A0A024RDJ3 95 107 NOLA1;GAR1 H/ACA ribonucleoprotein complex subunit 1 yes no 2 1.3953E-67 229.82 4 2 0.72834 0.96911 5.8904 5 Median 0.75272 0.96845 6.7887 4 0 Median 0.59876 0.96911 NaN 1 0 Median 269080000 165720000 103350000 200910000 114820000 86094000 68168000 50907000 17260000 13170 317 13521 47883;47884;47885;47886;47887;47888 72207;72208;72209;72210;72211;72212;72213;72214;72215;72216 72211 10 VQADVPPEILNNVGALHFR ALSAYGTATRILQEKVQADVPPEILNNVGA VPPEILNNVGALHFRLGNLGEAKKYFLASL K V Q F R L 2 1 2 1 0 1 1 1 1 1 2 0 0 1 2 0 0 0 0 3 0 0 19 0 2088.1116 A8K6X9;Q6PD62 A8K6X9 445 463 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 3 1.8338E-40 180.1 4 2 0.75762 1.0278 79.862 6 Median 0.74564 1.0148 2.3216 4 0 Median 3.2543 4.6579 27.114 2 0 Median 189530000 101780000 87746000 165910000 95836000 70072000 23622000 5948600 17674000 13171 629 13522 47889;47890;47891;47892;47893;47894 72217;72218;72219;72220;72221;72222;72223;72224;72225;72226;72227;72228 72220 12 VQAGDVITIDK YDLGTKMIESLTKDKVQAGDVITIDKATGK TKDKVQAGDVITIDKATGKISKLGRSFTRA K V Q D K A 1 0 0 2 0 1 0 1 0 2 0 1 0 0 0 0 1 0 0 2 0 0 11 0 1157.6292 Q9Y230;B3KNL2;M0R0Y3;B4DW30 Q9Y230 187 197 RUVBL2 RuvB-like 2 yes no 2 0.00011685 123.86 4 1 0.59759 0.73485 35.839 4 Median 0.58168 0.72893 3.365 3 0 Median 0.97919 1.4736 NaN 1 0 Median 92662000 55649000 37012000 74362000 46686000 27676000 18300000 8962800 9336800 13172 1801 13523 47895;47896;47897;47898;47899 72229;72230;72231;72232;72233;72234;72235;72236;72237;72238 72234 10 VQALEEANNDLENK TMQELNSRLASYLDKVQALEEANNDLENKI KVQALEEANNDLENKIQDWYDKKGPAAIQK K V Q N K I 2 0 3 1 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 14 0 1585.7584 CON__P35527;P35527 CON__P35527 171 184 KRT9 Keratin, type I cytoskeletal 9 yes no 2 1.3276E-49 216.91 5 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1289600000 1289600000 0 1003200000 1003200000 0 286340000 286340000 0 + 13173 963 13524 47900;47901;47902;47903;47904;47905;47906;47907 72239;72240;72241;72242;72243;72244;72245;72246;72247;72248;72249;72250;72251;72252;72253 72242 15 VQAQAEQGQQELK ALGTERTTLEGHLAKVQAQAEQGQQELKNL AKVQAQAEQGQQELKNLRACVLELEERLST K V Q L K N 2 0 0 0 0 5 2 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 13 0 1455.7318 A0A024RCS7;Q9BW19;B4DMA8;B4E063 A0A024RCS7 195 207 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 2 6.8095E-20 180.66 4 0.75437 0.96419 8.79 4 Median 0.75437 0.96419 8.79 4 0 Median NaN NaN NaN 0 0 Median 23812000 13411000 10401000 23812000 13411000 10401000 0 0 0 13174 303 13525 47908;47909;47910;47911 72254;72255;72256;72257;72258;72259;72260;72261;72262 72256 9 VQAQENAHGLSSSLQSNELVDK SDEDSIYRCKGKNVRVQAQENAHGLSSSLQ HGLSSSLQSNELVDKKCKSDIEKPKSEERS R V Q D K K 2 0 2 1 0 3 2 1 1 0 3 1 0 0 0 4 0 0 0 2 0 0 22 0 2353.151 Q05DN1;Q8N3Z6;X6R4A7 Q05DN1 110 131 ZCCHC7 Zinc finger CCHC domain-containing protein 7 yes no 3 0.035652 12.929 1 0.59957 0.76557 NaN 1 Median 0.59957 0.76557 NaN 1 0 Median NaN NaN NaN 0 0 Median 3014400 1688700 1325600 3014400 1688700 1325600 0 0 0 13175 1444 13526 47912 72263 72263 1 VQAVVAVAR KHEAIETDIAAYEERVQAVVAVARELEAEN AAYEERVQAVVAVARELEAENYHDIKRITA R V Q A R E 3 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 9 0 911.55525 B2ZZ89;A0A087WUZ3;Q01082;D6W5C0;K9MS24;F8W6C1 B2ZZ89 478 486 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 5.3321E-05 130.04 6 0.75545 1.0214 7.604 2 Median 0.75545 1.0214 7.604 2 0 Median NaN NaN NaN 0 0 Median 78514000 50673000 27841000 78514000 50673000 27841000 0 0 0 13176 346 13527 47913;47914;47915;47916;47917;47918 72264;72265;72266;72267;72268;72269;72270;72271 72265 8 VQDDEVGDGTTSVTVLAAELLR GVDNPAAKVLVDMSRVQDDEVGDGTTSVTV DGTTSVTVLAAELLREAESLIAKKIHPQTI R V Q L R E 2 1 0 3 0 1 2 2 0 0 3 0 0 0 0 1 3 0 0 4 0 0 22 0 2287.1543 V9HW96;P78371;F5GWF6;F8VQ14 V9HW96 90 111 HEL-S-100n;CCT2 T-complex protein 1 subunit beta yes no 2 0.0056022 50.608 1 0.2984 0.39753 NaN 1 Median 0.2984 0.39753 NaN 1 0 Median NaN NaN NaN 0 0 Median 9175600 7108000 2067600 9175600 7108000 2067600 0 0 0 13177 1426 13528 47919 72272 72272 1 VQDLFCSVGLNVNNPHFLIMQGR RNKYLINGVNANNTRVQDLFCSVGLNVNNP GLNVNNPHFLIMQGRITKVLNMKPPEILSM R V Q G R I 0 1 3 1 1 2 0 2 1 1 3 0 1 2 1 1 0 0 0 3 0 0 23 0 2657.3206 A0A024R158;O95347;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q05D74;Q6P712 A0A024R158 127 149 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 3 3.9287E-27 149.72 8 3 0.6565 0.91519 8.0717 11 Median 0.67411 0.91224 8.0321 8 0 Median 0.58104 0.95739 9.8697 3 0 Median 274230000 170570000 103660000 130240000 74975000 55264000 143990000 95596000 48395000 13178 50 13529;13530 47920;47921;47922;47923;47924;47925;47926;47927;47928;47929;47930 72273;72274;72275;72276;72277;72278;72279;72280;72281;72282;72283;72284;72285;72286;72287;72288;72289;72290;72291;72292 72284 13 19 VQDLSSGVLSFSLR QEHPCLVELLSHVLKVQDLSSGVLSFSLRL KVQDLSSGVLSFSLRLAGTFAAQENCFQYL K V Q L R L 0 1 0 1 0 1 0 1 0 0 3 0 0 1 0 4 0 0 0 2 0 0 14 0 1506.8042 Q6PJG6;F8WDN5 Q6PJG6 65 78 BRAT1 BRCA1-associated ATM activator 1 yes no 2 0.0086873 46.592 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1738600 1738600 0 1738600 1738600 0 0 0 0 13179 1596 13531 47931 72293 72293 1 VQDQDLPNTPHSK EVEENRIDVEILRMKVQDQDLPNTPHSKAV MKVQDQDLPNTPHSKAVYKILQGNENGNFI K V Q S K A 0 0 1 2 0 2 0 0 1 0 1 1 0 0 2 1 1 0 0 1 0 0 13 0 1477.7161 Q9HB00;Q08554 Q9HB00 377 389 DSC1 Desmocollin-1 yes no 2 0.014671 45.879 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 943350 943350 0 0 0 0 943350 943350 0 13180 1450 13532 47932 72294 72294 1 VQDTSNTGLGEDIIHQLSK KESEDSDEENDFTEKVQDTSNTGLGEDIIH SNTGLGEDIIHQLSKSE_____________ K V Q S K S 0 0 1 2 0 2 1 2 1 2 2 1 0 0 0 2 2 0 0 1 0 0 19 0 2054.028 A8K330;Q8IWA0;Q05D27 A8K330 792 810 WDR75 WD repeat-containing protein 75 yes no 3 9.2322E-16 132.5 4 2 0.88646 1.112 10.612 6 Median 0.91678 1.1711 5.2377 4 0 Median 0.60641 0.96083 2.0201 2 0 Median 396790000 229900000 166890000 197860000 106870000 90984000 198930000 123030000 75907000 13181 588 13533 47933;47934;47935;47936;47937;47938 72295;72296;72297;72298;72299;72300;72301;72302;72303;72304;72305;72306 72297 12 VQEAINSLGGSVFPK TATLTAPEFPEFATKVQEAINSLGGSVFPK VQEAINSLGGSVFPKLNWSAPRDAYWIAMN K V Q P K L 1 0 1 0 0 1 1 2 0 1 1 1 0 1 1 2 0 0 0 2 0 0 15 0 1544.8199 O75794;X6RA30;X6RKY7 O75794 90 104 CDC123 Cell division cycle protein 123 homolog yes no 2 0.0027943 54.343 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9722300 3240800 6481500 3240800 3240800 0 6481500 0 6481500 13182 1208 13534 47939;47940;47941;47942 72307;72308;72309;72310 72307 4 VQEHEDSGDSEVENEAK ENDEDALLRRLRGPRVQEHEDSGDSEVENE EHEDSGDSEVENEAKGNFPPQKKPVWVDEE R V Q A K G 1 0 1 2 0 1 5 1 1 0 0 1 0 0 0 2 0 0 0 2 0 0 17 0 1900.7923 Q9Y5J1;B2RAX6 Q9Y5J1 115 131 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2;3 4.2727E-19 153 6 3 0.69727 0.96422 9.6808 8 Median 0.69913 0.90517 10.707 5 0 Median 0.69383 1.0238 6.2056 3 0 Median 42709000 24199000 18511000 26317000 14534000 11782000 16393000 9664200 6728600 13183 1830 13535 47943;47944;47945;47946;47947;47948;47949;47950;47951 72311;72312;72313;72314;72315;72316;72317;72318;72319;72320;72321;72322;72323;72324 72322 14 VQEIQVVK EGQGVEICFELYNPRVQEIQVVKLEKRLDD FELYNPRVQEIQVVKLEKRLDDSLLYLRDA R V Q V K L 0 0 0 0 0 2 1 0 0 1 0 1 0 0 0 0 0 0 0 3 0 0 8 0 941.55458 S4R3W9;B4DIG4;A8K5D5;P49406 S4R3W9 73 80 MRPL19 39S ribosomal protein L19, mitochondrial yes no 2 0.033807 49.57 1 0.37198 0.4696 NaN 1 Median 0.37198 0.4696 NaN 1 0 Median NaN NaN NaN 0 0 Median 9883700 6944800 2938800 9883700 6944800 2938800 0 0 0 13184 616 13536 47952 72325 72325 1 VQELPLAR RVMEEIRNLTVKDFRVQELPLARIKKIMKL LTVKDFRVQELPLARIKKIMKLDEDVKMIS R V Q A R I 1 1 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 8 0 924.53927 Q5T6K7;E9PI99;A0A0A0MT00;Q5T6K5;Q13952;E9PJA8;E9PQR2 Q5T6K7 40 47 NFYC Nuclear transcription factor Y subunit gamma yes no 2 0.0061767 85.265 1 0.5732 0.74855 NaN 1 Median NaN NaN NaN 0 0 Median 0.5732 0.74855 NaN 1 0 Median 3284700 1856800 1427900 0 0 0 3284700 1856800 1427900 13185 402 13537 47953 72326 72326 1 VQELQQGAFGR QRGGLKQLSARNRRRVQELQQGAFGRGARS NRRRVQELQQGAFGRGARSKKGKMRKRM__ R V Q G R G 1 1 0 0 0 3 1 2 0 0 1 0 0 1 0 0 0 0 0 1 0 0 11 0 1231.6309 Q8TDD1 Q8TDD1 858 868 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 0.00060758 93.178 3 2 1.248 1.6599 23.14 3 Plateau 1.248 1.6599 23.14 3 0 Plateau NaN NaN NaN 0 0 Median 73549000 51862000 21687000 39276000 17589000 21687000 34273000 34273000 0 13186 1658 13538 47954;47955;47956;47957;47958 72327;72328;72329;72330;72331 72329 3 VQENSAYICSR KVANYCRQVQQLLGKVQENSAYICSRRQRV LLGKVQENSAYICSRRQRVSFGVSEQQAVE K V Q S R R 1 1 1 0 1 1 1 0 0 1 0 0 0 0 0 2 0 0 1 1 0 0 11 0 1325.6034 Q9Y3T9;B3KNC3;Q9H9J5;Q8NAK7 Q9Y3T9 577 587 NOC2L Nucleolar complex protein 2 homolog yes no 2 3.2502E-07 147.75 3 0.77858 1.043 16.397 3 Median 0.77858 1.043 16.397 3 0 Median NaN NaN NaN 0 0 Median 41473000 22689000 18784000 41473000 22689000 18784000 0 0 0 13187 1820 13539 47959;47960;47961 72332;72333;72334;72335 72332 4 VQFDGTNSAFK YNVSTTPYLQSVKKKVQFDGTNSAFKELKF VKKKVQFDGTNSAFKELKFLTPVRRSRRLQ K V Q F K E 1 0 1 1 0 1 0 1 0 0 0 1 0 2 0 1 1 0 0 1 0 0 11 0 1212.5775 B2RMQ4;Q8WWK9 B2RMQ4 606 616 CKAP2 Cytoskeleton-associated protein 2 yes no 2 0.00018674 126.07 2 2 0.63723 0.94812 30.815 3 Median 1.2562 1.6141 NaN 1 0 Median 0.63024 0.94656 0.23221 2 0 Median 26736000 15498000 11237000 4276000 1538200 2737700 22460000 13960000 8499600 13188 745 13540 47962;47963;47964;47965 72336;72337;72338;72339 72336 4 VQFHLK FVVTLDEVELIHFERVQFHLKNFDMVIVYK EVELIHFERVQFHLKNFDMVIVYKDYSKKV R V Q L K N 0 0 0 0 0 1 0 0 1 0 1 1 0 1 0 0 0 0 0 1 0 0 6 0 770.44391 Q9Y5B9 Q9Y5B9 848 853 SUPT16H FACT complex subunit SPT16 yes yes 2 0.035337 90.836 1 0.87426 1.1555 NaN 1 Median 0.87426 1.1555 NaN 1 0 Median NaN NaN NaN 0 0 Median 235530000 119880000 115650000 235530000 119880000 115650000 0 0 0 13189 1829 13541 47966 72340 72340 1 VQGGALEDSQLVAGVAFK MLDDLLQLKMIGIKKVQGGALEDSQLVAGV GALEDSQLVAGVAFKKTFSYAGFEMQPKKY K V Q F K K 3 0 0 1 0 2 1 3 0 0 2 1 0 1 0 1 0 0 0 3 0 0 18 0 1787.9418 B7Z1C9;B7Z7I4;Q6IBT3;Q53HV2;Q99832 B7Z1C9 72 89 CCT7 T-complex protein 1 subunit eta yes no 2 1.951E-17 104.87 5 0.23639 0.30786 NaN 1 Median 0.23639 0.30786 NaN 1 0 Median NaN NaN NaN 0 0 Median 10819000 9544600 1274200 10819000 9544600 1274200 0 0 0 13190 903 13542 47967;47968;47969;47970;47971 72341;72342;72343;72344;72345 72344 5 VQGGVPAGSDEYEDECPHLIALSSLNR EKNRTENYNRQDGQRVQGGVPAGSDEYEDE EDECPHLIALSSLNREFRPFRDEENVGAMN R V Q N R E 2 1 1 2 1 1 3 3 1 1 3 0 0 0 2 3 0 0 1 2 0 0 27 0 2912.3611 Q9BVS4;H0Y919;Q9NVB0;H0Y8R4 Q9BVS4 434 460 RIOK2 Serine/threonine-protein kinase RIO2 yes no 3 2.8033E-07 77.053 3 0.71001 0.96074 16.672 3 Median 0.71001 0.96074 16.672 3 0 Median NaN NaN NaN 0 0 Median 12634000 8164400 4469100 12634000 8164400 4469100 0 0 0 13191 1721 13543 47972;47973;47974 72346;72347;72348;72349;72350;72351 72347 6 VQGLEQAVDNFEGK PKHPGVLKVEAILEKVQGLEQAVDNFEGKK KVQGLEQAVDNFEGKKTDKKYLMIEEYLTK K V Q G K K 1 0 1 1 0 2 2 2 0 0 1 1 0 1 0 0 0 0 0 2 0 0 14 0 1532.7471 O95817;Q53GY1 O95817 432 445 BAG3 BAG family molecular chaperone regulator 3 yes no 2 0.0010582 68.069 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13192 1223 13544 47975 72352 72352 1 VQGLLEEEAAAR LGGSGGAGGRLTRGRVQGLLEEEAAARGRL RGRVQGLLEEEAAARGRLERTRLGALALPR R V Q A R G 3 1 0 0 0 1 3 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 12 0 1284.6674 Q6SPF0;E9PIW9 Q6SPF0 273 284 SAMD1 Atherin yes no 2 0.00059208 71.03 1 2 0.55673 0.86883 18.268 3 Plateau 0.47762 0.63414 NaN 1 0 Median 0.55458 0.87016 0.21521 2 0 Median 66405000 44498000 21906000 6372600 3918000 2454600 60032000 40580000 19452000 13193 1599 13545 47976;47977;47978 72353;72354;72355;72356;72357;72358;72359 72355 7 VQGSDSDEEVVVATTR KEKVEFGVLVSFAYKVQGSDSDEEVVVATT QGSDSDEEVVVATTRIETMLGDVAVAVHPK K V Q T R I 1 1 0 2 0 1 2 1 0 0 0 0 0 0 0 2 2 0 0 4 0 0 16 0 1690.801 A0A024RCN6;P26640;A0A140T936 A0A024RCN6 522 537 VARS Valine--tRNA ligase yes no 2 1.1632E-12 138.31 4 1 0.3955 0.5475 100.91 3 Median 0.34155 0.46098 24.324 2 0 Median 2.0302 2.5803 NaN 1 0 Median 29649000 21282000 8367000 25205000 19567000 5638000 4444900 1715900 2729000 13194 297 13546 47979;47980;47981;47982;47983 72360;72361;72362;72363;72364;72365 72364 5 VQGVFQR YSFKKDEIENSIVHRVQGVFQRASAKWKDD IENSIVHRVQGVFQRASAKWKDDVQLWLSY R V Q Q R A 0 1 0 0 0 2 0 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 7 0 832.45554 B3KQ21;Q9NYH9;B4DSL9;B7Z9G4 B3KQ21 92 98 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes no 2 0.0045318 137.5 3 2 0.83788 1.1162 17.158 5 Median 0.95864 1.281 18.988 3 0 Median 0.75389 1.0919 3.0239 2 0 Median 69274000 37909000 31366000 55813000 30383000 25430000 13461000 7525700 5935300 13195 768 13547 47984;47985;47986;47987;47988 72366;72367;72368;72369;72370;72371 72367 5 VQGWALTR APETDQGSGPDAVGRVQGWALTRQQLQALL GPDAVGRVQGWALTRQQLQALLLKRFLLAR R V Q T R Q 1 1 0 0 0 1 0 1 0 0 1 0 0 0 0 0 1 1 0 1 0 0 8 0 929.5083 Q8IZY2;H0YF58;D6W5Y0 Q8IZY2 1211 1218 ABCA7 ATP-binding cassette sub-family A member 7 yes no 2 0.043076 44.692 1 0.88987 1.2338 NaN 1 Median 0.88987 1.2338 NaN 1 0 Median NaN NaN NaN 0 0 Median 4256400 1822800 2433600 4256400 1822800 2433600 0 0 0 13196 1632 13548 47989 72372 72372 1 VQIFTADLSEIPR PPPYKHIKVNRPIGRVQIFTADLSEIPRCN GRVQIFTADLSEIPRCNCKATDENPCGIDS R V Q P R C 1 1 0 1 0 1 1 0 0 2 1 0 0 1 1 1 1 0 0 1 0 0 13 0 1487.7984 B2RWP5;Q96L73;Q658U6;Q9H6B5;A0A1D8GZ55;A0A1D8GZ56;Q96DQ7 B2RWP5 1613 1625 NSD1;DKFZp666C163 Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 2 0.011041 84.658 1 1 0.85373 1.2423 NaN 1 Median NaN NaN NaN 0 0 Median 0.85373 1.2423 NaN 1 0 Median 7823000 6819900 1003100 1478300 1478300 0 6344700 5341600 1003100 13197 749 13549 47990;47991 72373;72374 72373 2 VQIYTADISEIPK PPPYKHIKVNKPYGKVQIYTADISEIPKCN GKVQIYTADISEIPKCNCKPTDENPCGFDS K V Q P K C 1 0 0 1 0 1 1 0 0 3 0 1 0 0 1 1 1 0 1 1 0 0 13 0 1475.7872 O96028 O96028 1003 1015 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 2 4.0573E-07 136.02 3 0.90298 1.1265 2.8447 3 Median 0.90298 1.1265 2.8447 3 0 Median NaN NaN NaN 0 0 Median 62109000 33586000 28524000 62109000 33586000 28524000 0 0 0 13198 1228 13550 47992;47993;47994 72375;72376;72377;72378 72376 4 VQLAELIDCLDK TENENEKKIWYYSTKVQLAELIDCLDKDYW STKVQLAELIDCLDKDYWEAELCKILEEMR K V Q D K D 1 0 0 2 1 1 1 0 0 1 3 1 0 0 0 0 0 0 0 1 0 0 12 0 1415.733 E7ETD6;Q12830;F5GXF5;A0A0A0MR81;B4DDK2;B4DM40 E7ETD6 359 370 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 4.9531E-05 91.937 3 0.65682 0.83442 16.648 3 Median 0.65682 0.83442 16.648 3 0 Median NaN NaN NaN 0 0 Median 24491000 16174000 8316300 24491000 16174000 8316300 0 0 0 13199 1015 13551 47995;47996;47997 72379;72380;72381;72382;72383 72381 5 VQLDVFTLSGFR QALKIVDFSYSVDLRVQLDVFTLSGFRTVQ DLRVQLDVFTLSGFRTVQILEGQKILANCS R V Q F R T 0 1 0 1 0 1 0 1 0 0 2 0 0 2 0 1 1 0 0 2 0 0 12 0 1380.7402 O60566 O60566 920 931 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes yes 2 0.0093764 43.512 2 0.84523 1.1882 3.3925 2 Median NaN NaN NaN 0 0 Median 0.84523 1.1882 3.3925 2 0 Median 14163000 8087900 6075200 0 0 0 14163000 8087900 6075200 13200 1191 13552 47998;47999 72384;72385;72386 72385 3 VQLISGPPAK KDLCFTWREFSDFIRVQLISGPPAKLLLID SDFIRVQLISGPPAKLLLIDWPELKESIPV R V Q A K L 1 0 0 0 0 1 0 1 0 1 1 1 0 0 2 1 0 0 0 1 0 0 10 0 1008.5968 A6NHR9;J3KTL8 A6NHR9 1247 1256 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.0067333 57.96 1 0.84213 1.0716 NaN 1 Median 0.84213 1.0716 NaN 1 0 Median NaN NaN NaN 0 0 Median 13078000 7668200 5410200 13078000 7668200 5410200 0 0 0 13201 568 13553 48000 72387 72387 1 VQLPPEIQLAQR ______________________________ VSRVQLPPEIQLAQRLAGNEQVTRDRAVRK R V Q Q R L 1 1 0 0 0 3 1 0 0 1 2 0 0 0 2 0 0 0 0 1 0 0 12 0 1390.7932 Q6PJJ2;P56182;B4DZM3;Q53FR7;D6RE82 Q6PJJ2 10 21 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 2 0.00089513 109.44 4 1 0.75918 1.0208 7.0051 5 Median 0.78742 1.0604 7.4784 4 0 Median 0.63486 0.98761 NaN 1 0 Median 125090000 70644000 54448000 92785000 52843000 39942000 32307000 17801000 14506000 13202 1381 13554 48001;48002;48003;48004;48005 72388;72389;72390;72391;72392;72393;72394;72395;72396;72397 72396 10 VQNDAETLQK KETEQLEIKEVHIEKVQNDAETLQKCLILC VHIEKVQNDAETLQKCLILCYELLKQMSIS K V Q Q K C 1 0 1 1 0 2 1 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 10 0 1144.5724 H0Y9Z8 H0Y9Z8 115 124 NCAPG yes yes 2 0.0086867 63.48 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11116000 0 11116000 0 0 0 11116000 0 11116000 13203 1096 13555 48006 72398 72398 1 VQQLALR V Q L R 1 1 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 826.50249 REV__Q5W9G0 yes yes 2 0.03072 62.978 2 0.68574 1.122 1.2387 2 Median NaN NaN NaN 0 0 Median 0.68574 1.122 1.2387 2 0 Median 208280000 123900000 84383000 0 0 0 208280000 123900000 84383000 + 13204 1857 13556 48007;48008 72399;72400 72400 2 VQQLLHICSEHFDSK LVDVCAYAGSGNVLKVQQLLHICSEHFDSK VQQLLHICSEHFDSKEKEEDKDKKEKKDKD K V Q S K E 0 0 0 1 1 2 1 0 2 1 2 1 0 1 0 2 0 0 0 1 0 0 15 0 1839.8938 Q59EG8;Q13200;B4DM22;Q13041;Q9NSM5;H7C1H2 Q59EG8 614 628 PSMD2;DKFZp564A2282 26S proteasome non-ATPase regulatory subunit 2 yes no 3 0.0041332 35.329 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5038200 5038200 0 5038200 5038200 0 0 0 0 13205 1465 13557 48009 72401 72401 1 VQQSSESSTSSPSQHEATPGAR HIKTLEEIKLEKALRVQQSSESSTSSPSQH STSSPSQHEATPGARRLLRITKRTGMKEEK R V Q A R R 2 1 0 0 0 3 2 1 1 0 0 0 0 0 2 7 2 0 0 1 0 0 22 0 2257.0207 B4DLG2;O75152;E9PQ61;E9PBY7;B4DYM8;A0A024R8H9;A0A1B0GTU1;A0A1B0GUI2 B4DLG2 431 452 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 3 3.4415E-24 118.19 4 2 0.71653 0.96212 32.014 6 Median 0.60798 0.84119 16.08 4 0 Median 1.1292 1.4702 11.291 2 0 Median 24162000 13544000 10618000 17141000 10435000 6706500 7021400 3110000 3911400 13206 826 13558 48010;48011;48012;48013;48014;48015 72402;72403;72404;72405;72406;72407;72408;72409;72410 72407 8 VQQTVQDLFGR IGEVILVGGMTRMPKVQQTVQDLFGRAPSK RMPKVQQTVQDLFGRAPSKAVNPDEAVAIG K V Q G R A 0 1 0 1 0 3 0 1 0 0 1 0 0 1 0 0 1 0 0 2 0 0 11 0 1289.6728 B7Z4V2;V9HW84;P38646;Q8N1C8;B7Z1V7;B7Z4T3;A1XP52 B7Z4V2 381 391 HEL-S-124m;HSPA9 Stress-70 protein, mitochondrial yes no 2 5.0955E-07 144.77 2 2 0.41475 0.55519 3.6787 2 Median 0.41475 0.55519 3.6787 2 0 Median NaN NaN NaN 0 0 Median 38854000 29321000 9533200 32148000 22615000 9533200 6705600 6705600 0 13207 910 13559 48016;48017;48018;48019 72411;72412;72413;72414 72411 4 VQREPLLTLVK GEVAKEWQELDDAEKVQREPLLTLVKEIVP DAEKVQREPLLTLVKEIVPYNMAHNAEHEA K V Q V K E 0 1 0 0 0 1 1 0 0 0 3 1 0 0 1 0 1 0 0 2 0 0 11 1 1294.7973 Q59EG8;Q13200;Q9NSM5 Q59EG8 184 194 PSMD2;DKFZp564A2282 26S proteasome non-ATPase regulatory subunit 2 yes no 3 0.014067 36.847 2 0.31094 0.40688 4.0377 2 Median 0.31094 0.40688 4.0377 2 0 Median NaN NaN NaN 0 0 Median 25535000 18282000 7253100 25535000 18282000 7253100 0 0 0 13208 1465 13560 48020;48021 72415;72416 72416 2 VQRGECQTTIQGQAR DKAKIAKSKKKMRQKVQRGECQTTIQGQAR VQRGECQTTIQGQARNKRKQETKSLKQKEA K V Q A R N 1 2 0 0 1 4 1 2 0 1 0 0 0 0 0 0 2 0 0 1 0 0 15 1 1730.8482 J3QK86;J3KPG5;F8VU39;Q9UIF9;H0YII3 J3QK86 689 703 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 3 0.023818 50.024 1 0.72705 0.95061 NaN 1 Median 0.72705 0.95061 NaN 1 0 Median NaN NaN NaN 0 0 Median 1005600 351890 653660 1005600 351890 653660 0 0 0 13209 1062 13561 48022 72417 72417 1 VQRVLVASSVVAGESQK IKENSTHFSQPNSTKVQRVLVASSVVAGES RVLVASSVVAGESQKPELKAWQGMVPFVFV K V Q Q K P 2 1 0 0 0 2 1 1 0 0 1 1 0 0 0 3 0 0 0 5 0 0 17 1 1755.9843 X5DQX7;Q06787 X5DQX7 373 389 FMR1 Fragile X mental retardation protein 1 yes no 2 0.032437 29.936 1 0.62263 0.81171 NaN 1 Median 0.62263 0.81171 NaN 1 0 Median NaN NaN NaN 0 0 Median 28261000 17476000 10785000 28261000 17476000 10785000 0 0 0 13210 1447 13562 48023 72418 72418 1 VQSDGQIVLVDDWIK TLVTPLQLLLFASKKVQSDGQIVLVDDWIK VQSDGQIVLVDDWIKLQISHEAAACITGLR K V Q I K L 0 0 0 3 0 2 0 1 0 2 1 1 0 0 0 1 0 1 0 3 0 0 15 0 1713.8938 Q08211;B3KU66 Q08211 1075 1089 DHX9 ATP-dependent RNA helicase A yes no 2 0.0008928 62.924 2 0.43808 0.66251 14.33 2 Median NaN NaN NaN 0 0 Median 0.43808 0.66251 14.33 2 0 Median 34197000 23764000 10433000 0 0 0 34197000 23764000 10433000 13211 1448 13563 48024;48025 72419;72420;72421 72421 3 VQSGSESVIQEYVDLR KAQLEPVASPAKKPKVQSGSESVIQEYVDL QSGSESVIQEYVDLRTHYSELTTLTSQYIK K V Q L R T 0 1 0 1 0 2 2 1 0 1 1 0 0 0 0 3 0 0 1 3 0 0 16 0 1807.8952 Q15149 Q15149 1442 1457 PLEC Plectin yes yes 2 3.4167E-25 209.25 4 0.93694 1.2511 5.7827 4 Median 0.93694 1.2511 5.7827 4 0 Median NaN NaN NaN 0 0 Median 73462000 39712000 33751000 73462000 39712000 33751000 0 0 0 13212 1507 13564 48026;48027;48028;48029 72422;72423;72424;72425;72426;72427;72428;72429;72430 72423 9 VQSVEQIR RRNTWLYQALREGTRVQSVEQIREVASGAA ALREGTRVQSVEQIREVASGAARIRGETLG R V Q I R E 0 1 0 0 0 2 1 0 0 1 0 0 0 0 0 1 0 0 0 2 0 0 8 0 957.52434 Q5SQP8;P56545;A0A087WYL1;E7ESU7;D6RAX2;E7EPF8;X5D7T7;X5D8Y5;Q4KMQ8;Q13363 Q5SQP8 230 237 CTBP2;CTBP1 C-terminal-binding protein 2;C-terminal-binding protein 1 yes no 2 0.012943 67.032 2 2.633 3.3472 NaN 1 Median NaN NaN NaN 0 0 Median 2.633 3.3472 NaN 1 0 Median 7440800 1361000 6079800 0 0 0 7440800 1361000 6079800 13213 1383 13565 48030;48031 72431;72432 72432 2 VQSVETVEGCTHEVALPAEEDYLPLK ITEDLSLADLMPRVKVQSVETVEGCTHEVA HEVALPAEEDYLPLKPRVGKAAKEYPFILD K V Q L K P 2 0 0 1 1 1 5 1 1 0 3 1 0 0 2 1 2 0 1 4 0 0 26 0 2912.4114 P42285;A8K6I4 P42285 101 126 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 3 0.020599 15.896 1 0.54138 0.71297 NaN 1 Median 0.54138 0.71297 NaN 1 0 Median NaN NaN NaN 0 0 Median 5410100 3674800 1735300 5410100 3674800 1735300 0 0 0 13214 1336 13566 48032 72433 72433 1 VQSVETVEGCTHEVALPAEEDYLPLKPR ITEDLSLADLMPRVKVQSVETVEGCTHEVA VALPAEEDYLPLKPRVGKAAKEYPFILDAF K V Q P R V 2 1 0 1 1 1 5 1 1 0 3 1 0 0 3 1 2 0 1 4 0 0 28 1 3165.5652 P42285;A8K6I4 P42285 101 128 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 4 5.052E-12 94.838 3 0.63458 0.84007 13.56 3 Median 0.63458 0.84007 13.56 3 0 Median NaN NaN NaN 0 0 Median 49304000 30726000 18578000 49304000 30726000 18578000 0 0 0 13215 1336 13567 48033;48034;48035 72434;72435;72436;72437 72436 4 VQTEVLQK EKAKQLRALRKYGKKVQTEVLQKRQQEKAH LRKYGKKVQTEVLQKRQQEKAHMMNAIKKY K V Q Q K R 0 0 0 0 0 2 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 8 0 943.53385 Q6IB29;H7C2Q8;Q99848 Q6IB29 180 187 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 1;2 4.9815E-11 175.38 2 2 0.82555 1.1692 9.9281 4 Median 1.0038 1.2937 5.807 2 0 Median 0.69942 1.1004 0.058555 2 0 Median 171500000 90234000 81262000 106920000 51601000 55317000 64578000 38633000 25945000 13216 1123 13568 48036;48037;48038;48039 72438;72439;72440;72441;72442;72443;72444 72440 7 VQTFPFLGR NFDLPYLISRAQTLKVQTFPFLGRVAGLCS RAQTLKVQTFPFLGRVAGLCSNIRDSSFQS K V Q G R V 0 1 0 0 0 1 0 1 0 0 1 0 0 2 1 0 1 0 0 1 0 0 9 0 1063.5815 A0A024R4F4;Q308M6;M0R2B7;P28340;M0QZR8;Q59FA0 A0A024R4F4 415 423 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 2 0.033215 79.906 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 760280 760280 0 760280 760280 0 0 0 0 13217 123 13569 48040 72445 72445 1 VQTHLENPTK ______________________________ ______________________________ - V Q T K Y 0 0 1 0 0 1 1 0 1 0 1 1 0 0 1 0 2 0 0 1 0 0 10 0 1165.6091 A0A0H3W5T2;B4DNC7;A8K5K3;O75030;C9JBI8;C9J845 A0A0H3W5T2 1 10 MITF Microphthalmia-associated transcription factor yes no 3 0.033137 53.237 1 0.82763 1.0785 NaN 1 Median 0.82763 1.0785 NaN 1 0 Median NaN NaN NaN 0 0 Median 2189400 1146400 1043000 2189400 1146400 1043000 0 0 0 13218 440 13570 48041 72446 72446 1 VQTHLENPTR LSRPPPAQVPREVLKVQTHLENPTRYHLQQ REVLKVQTHLENPTRYHLQQARRQQVKQYL K V Q T R Y 0 1 1 0 0 1 1 0 1 0 1 0 0 0 1 0 2 0 0 1 0 0 10 0 1193.6153 A0A024QZ23;P19532;B4DIA5 A0A024QZ23 179 188 TFE3 Transcription factor E3 yes no 3 0.045889 23.804 1 1.0617 1.4717 NaN 1 Median 1.0617 1.4717 NaN 1 0 Median NaN NaN NaN 0 0 Median 6248800 2537300 3711500 6248800 2537300 3711500 0 0 0 13219 4 13571 48042 72447 72447 1 VQTLEELEELGK APEEEEPLLLQRPERVQTLEELEELGKEEC PERVQTLEELEELGKEECFQNKELPRPVLE R V Q G K E 0 0 0 0 0 1 4 1 0 0 3 1 0 0 0 0 1 0 0 1 0 0 12 0 1386.7242 Q9BVJ6;B4E343;Q08E77;A0A024RDV0;Q5TAP6 Q9BVJ6 508 519 UTP14A;UTP14C;hCG_1811699 U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C yes no 2 1.7442E-12 158.47 4 2 0.89633 1.2502 7.0669 6 Median 0.9419 1.1968 8.355 4 0 Median 0.82002 1.2776 0.98756 2 0 Median 91810000 47421000 44389000 44849000 22456000 22393000 46961000 24965000 21996000 13220 1719 13572 48043;48044;48045;48046;48047;48048 72448;72449;72450;72451;72452;72453;72454;72455;72456;72457 72450 9 VQTLEELEELGKEECFQNK APEEEEPLLLQRPERVQTLEELEELGKEEC EELEELGKEECFQNKELPRPVLEGQQSERT R V Q N K E 0 0 1 0 1 2 6 1 0 0 3 2 0 1 0 0 1 0 0 1 0 0 19 1 2322.1049 Q9BVJ6;B4E343 Q9BVJ6 508 526 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 3 1.0189E-08 108.18 3 1.0189 1.2549 2.5793 2 Median 1.0189 1.2549 2.5793 2 0 Median NaN NaN NaN 0 0 Median 20818000 10577000 10241000 20818000 10577000 10241000 0 0 0 13221 1719 13573 48049;48050;48051 72458;72459;72460;72461;72462 72462 5 VQTLQFHPFEAQTLISGSYDK SLGKPAASLAVHTDKVQTLQFHPFEAQTLI HPFEAQTLISGSYDKSVALYDCRSPDESHR K V Q D K S 1 0 0 1 0 3 1 1 1 1 2 1 0 2 1 2 2 0 1 1 0 0 21 0 2408.2012 Q9BV37;Q53FW9;A0A024RBH5;Q13610;B4DNL1;B4DJV5 Q9BV37 302 322 PWP1 Periodic tryptophan protein 1 homolog yes no 3 2.7341E-57 165.9 4 2 0.62509 1.042 9.0615 4 Linear 0.75301 0.98489 5.655 2 0 Median 0.53182 0.85077 0.24687 2 0 Median 453740000 313510000 140240000 357930000 248380000 109560000 95810000 65131000 30680000 13222 273 13574 48052;48053;48054;48055;48056;48057 72463;72464;72465;72466;72467;72468;72469;72470;72471 72465 9 VQVALEELQDLK LELTDTGLLSGSEERVQVALEELQDLKGVW EERVQVALEELQDLKGVWSELSKVWEQIDQ R V Q L K G 1 0 0 1 0 2 2 0 0 0 3 1 0 0 0 0 0 0 0 2 0 0 12 0 1383.7609 Q14204 Q14204 1319 1330 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.014263 41.704 1 0.67385 0.82691 NaN 1 Median 0.67385 0.82691 NaN 1 0 Median NaN NaN NaN 0 0 Median 3027800 2149500 878270 3027800 2149500 878270 0 0 0 13223 1483 13575 48058 72472 72472 1 VQVEYKGETK KHWPFMVVNDAGRPKVQVEYKGETKSFYPE AGRPKVQVEYKGETKSFYPEEVSSMVLTKM K V Q T K S 0 0 0 0 0 1 2 1 0 0 0 2 0 0 0 0 1 0 1 2 0 0 10 1 1179.6136 V9HW22;P11142;E9PKE3;Q53GZ6;Q96IS6;B3KTV0;Q53HF2;E9PN89;B4DTX2;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 V9HW22 103 112 HEL-S-72p;HSPA8 Heat shock cognate 71 kDa protein no no 2;3 1.0369E-09 174.86 8 2 0.58641 0.72271 45.958 10 Median 0.57313 0.70796 8.1733 8 0 Median 1.3109 2.0626 9.149 2 0 Median 179050000 108790000 70252000 156240000 98885000 57351000 22811000 9909700 12901000 13224 1253 13576 48059;48060;48061;48062;48063;48064;48065;48066;48067;48068 72473;72474;72475;72476;72477;72478;72479;72480;72481;72482;72483;72484;72485;72486;72487 72477 13 VQVPNCDEIFYAGTGNLLLR HSLLIKNLKNEITKKVQVPNCDEIFYAGTG CDEIFYAGTGNLLLRDADSITLFDVQQKRT K V Q L R D 1 1 2 1 1 1 1 2 0 1 3 0 0 1 1 0 1 0 1 2 0 0 20 0 2278.1416 P53621 P53621 448 467 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 9.7847E-11 113.35 4 0.45949 0.6414 45.213 2 Median 0.45949 0.6414 45.213 2 0 Median NaN NaN NaN 0 0 Median 9941600 5315000 4626600 9941600 5315000 4626600 0 0 0 13225 1371 13577 48069;48070;48071;48072 72488;72489;72490;72491;72492 72489 5 VQVQDNEGCPVEALVK EFTVDAKHGGKAPLRVQVQDNEGCPVEALV QVQDNEGCPVEALVKDNGNGTYSCSYVPRK R V Q V K D 1 0 1 1 1 2 2 1 0 0 1 1 0 0 1 0 0 0 0 4 0 0 16 0 1783.8774 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 709 724 FLNA Filamin-A yes no 2 4.3211E-09 145.81 4 0.81579 1.0316 3.5053 4 Median 0.81579 1.0316 3.5053 4 0 Median NaN NaN NaN 0 0 Median 109040000 56523000 52513000 109040000 56523000 52513000 0 0 0 13226 1287 13578 48073;48074;48075;48076 72493;72494;72495;72496;72497;72498;72499 72495 7 VQVSVLK VRHCIAKSQERVEGKVQVSVLKGQVYILGR SQERVEGKVQVSVLKGQVYILGRESPLSLY K V Q L K G 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 1 0 0 0 3 0 0 7 0 771.48544 Q5T6L4;A8KAP9;P00966;B4E395 Q5T6L4 349 355 ASS;ASS1 Argininosuccinate synthase yes no 2 0.023393 91.906 2 0.7209 0.9321 0.5112 2 Median 0.7209 0.9321 0.5112 2 0 Median NaN NaN NaN 0 0 Median 11704000 6623200 5080600 11704000 6623200 5080600 0 0 0 13227 655 13579 48077;48078 72500;72501 72501 2 VQVVGTYR ILDDDLVDKAKPGDRVQVVGTYRCLPGKKG KAKPGDRVQVVGTYRCLPGKKGGYTSGTFR R V Q Y R C 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 3 0 0 8 0 920.50797 Q8NHX6;Q53HJ4;B2R7C5;A0A0S2Z4T1;A0A0S2Z492;P25205;B4DUQ9;J3KQ69;B4DS46 Q8NHX6 235 242 HCC5;MCM3 DNA helicase;DNA replication licensing factor MCM3 yes no 2 0.012914 67.981 1 2.4948 3.2518 NaN 1 Median NaN NaN NaN 0 0 Median 2.4948 3.2518 NaN 1 0 Median 4085100 1360700 2724400 0 0 0 4085100 1360700 2724400 13228 463 13580 48079 72502 72502 1 VQWGVFVPR EPRPLYIQKGISREKVQWGVFVPRDVPESF GISREKVQWGVFVPRDVPESFTSEAYQWLN K V Q P R D 0 1 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 1 0 3 0 0 9 0 1086.5974 A8K330;Q8IWA0 A8K330 629 637 WDR75 WD repeat-containing protein 75 yes no 2 0.028448 46.426 1 0.59245 0.83719 NaN 1 Median NaN NaN NaN 0 0 Median 0.59245 0.83719 NaN 1 0 Median 7502500 3644400 3858100 0 0 0 7502500 3644400 3858100 13229 588 13581 48080 72503 72503 1 VQYPDYYAIIK SGRLISELFQKLPSKVQYPDYYAIIKEPID LPSKVQYPDYYAIIKEPIDLKTIAQRIQNG K V Q I K E 1 0 0 1 0 1 0 0 0 2 0 1 0 0 1 0 0 0 3 1 0 0 11 0 1371.7075 Q86U86;E7EVG2;H0Y5B5;C9JPI5 Q86U86 215 225 PBRM1 Protein polybromo-1 yes no 2 0.039415 37.476 1 1 0.57049 0.77248 10.604 2 Median 0.54364 0.71668 NaN 1 0 Median 0.59866 0.83263 NaN 1 0 Median 11048000 7056600 3991000 5340700 3221700 2119000 5706800 3834800 1872000 13230 1620 13582 48081;48082 72504;72505 72504 2 VQYTETEPYHNYR EIERFWRGGQYENFRVQYTETEPYHNYRER FRVQYTETEPYHNYRERERERERENRQRER R V Q Y R E 0 1 1 0 0 1 2 0 1 0 0 0 0 0 1 0 2 0 3 1 0 0 13 0 1698.7638 E7ERS3;B4DTK7;Q86VM9;Q86YU5 E7ERS3 414 426 ZC3H18;FLJ00419 Zinc finger CCCH domain-containing protein 18 no no 3 0.028518 24.275 1 0.56577 0.78265 NaN 1 Median 0.56577 0.78265 NaN 1 0 Median NaN NaN NaN 0 0 Median 11614000 8166400 3447900 11614000 8166400 3447900 0 0 0 13231 859 13583 48083 72506;72507 72507 2 VRAEIYEAFENIYPILK LLIFVSGKVVLTGAKVRAEIYEAFENIYPI AEIYEAFENIYPILKGFRKTT_________ K V R L K G 2 1 1 0 0 0 3 0 0 3 1 1 0 1 1 0 0 0 2 1 0 0 17 1 2067.1041 Q32MN6;B4DPC1;Q32MN7;P20226;H0Y6D8;Q5U0C8 Q32MN6 266 282 TBP TATA-box-binding protein yes no 3 2.6585E-06 82.007 3 0.56794 0.73868 15.274 2 Median 0.56794 0.73868 15.274 2 0 Median NaN NaN NaN 0 0 Median 11281000 7778400 3502900 11281000 7778400 3502900 0 0 0 13232 845 13584 48084;48085;48086 72508;72509;72510 72509 3 VRALEESNYELEGK TMQNLNDRLASYLDKVRALEESNYELEGKI KVRALEESNYELEGKIKEWYEKHGNSHQGE K V R G K I 1 1 1 0 0 0 4 1 0 0 2 1 0 0 0 1 0 0 1 1 0 0 14 1 1635.8104 CON__P13645;P13645;CON__P02535-1 CON__P13645 164 177 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 1.7759E-19 143.05 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25716000 25716000 0 25716000 25716000 0 0 0 0 + 13233 960 13585 48087;48088;48089;48090 72511;72512;72513;72514;72515 72514 5 VRDTYLDTQVVGQTGVIR EQNSSDWVTTDIQVKVRDTYLDTQVVGQTG TYLDTQVVGQTGVIRSVTGGMCSVYLKDSE K V R I R S 0 2 0 2 0 2 0 2 0 1 1 0 0 0 0 0 3 0 1 4 0 0 18 1 2019.0749 B4DZJ7;O00267;B4E0Q4;B4DJK4 B4DZJ7 966 983 SUPT5H Transcription elongation factor SPT5 yes no 3 4.6045E-05 101.28 3 0.73201 0.98444 12.038 2 Median 0.73201 0.98444 12.038 2 0 Median NaN NaN NaN 0 0 Median 12590000 6007400 6582600 12590000 6007400 6582600 0 0 0 13234 879 13586 48091;48092;48093 72516;72517;72518 72518 3 VRDVFEAK QGFITDPVVLSPKDRVRDVFEAKARHGFCG VLSPKDRVRDVFEAKARHGFCGIPITDTGR R V R A K A 1 1 0 1 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 2 0 0 8 1 962.51853 P12268;H0Y4R1;B7Z1G4;Q6QE17;E7ETK5 P12268 127 134 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2 0.043957 79.893 1 0.4266 0.55414 NaN 1 Median 0.4266 0.55414 NaN 1 0 Median NaN NaN NaN 0 0 Median 10416000 7261700 3154000 10416000 7261700 3154000 0 0 0 13235 1261 13587 48094 72519 72519 1 VREEEIEVDSR KRKKGEKRASSPFRRVREEEIEVDSRVADN PFRRVREEEIEVDSRVADNSFDAKRGAAGD R V R S R V 0 2 0 1 0 0 4 0 0 1 0 0 0 0 0 1 0 0 0 2 0 0 11 1 1359.663 B2RAU8;A0A0A0MRM9;Q14978;Q96J17 B2RAU8 628 638 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 2;3 0.0034183 114.71 2 2 0.89658 1.2579 13.486 4 Median 1.0059 1.3696 18.339 2 0 Median 0.84646 1.229 9.5936 2 0 Median 47022000 22875000 24147000 25341000 11439000 13902000 21682000 11437000 10245000 13236 388 13588 48095;48096;48097;48098 72520;72521;72522;72523;72524 72521 4 VREEVPLELVEAHVK VASAAAKAALEEFSRVREEVPLELVEAHVK VREEVPLELVEAHVKKVQEAARASGKVDPT R V R V K K 1 1 0 0 0 0 4 0 1 0 2 1 0 0 1 0 0 0 0 4 0 0 15 1 1745.9676 Q58EY4;Q92922;Q05CR1;B4DYQ1;Q05BW5;B4DYF9 Q58EY4 725 739 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 3 0.00010094 94.487 3 2 0.91564 1.3902 64.113 4 Median 0.52815 0.71311 46.302 2 0 Median 1.1587 1.9566 0.22328 2 0 Median 77092000 46376000 30716000 27423000 22997000 4426300 49669000 23380000 26289000 13237 1549 13589 48099;48100;48101;48102;48103 72525;72526;72527;72528;72529;72530;72531;72532 72528 8 VRELLEQISAFDNVPR QKISELIKRPNVSPKVRELLEQISAFDNVP RELLEQISAFDNVPRKKAKFQNWMKNSLKV K V R P R K 1 2 1 1 0 1 2 0 0 1 2 0 0 1 1 1 0 0 0 2 0 0 16 1 1885.0058 Q9NX58;A8K3Y5 Q9NX58 94 109 LYAR Cell growth-regulating nucleolar protein yes no 3 5.2556E-19 121.45 4 2 0.85973 1.1769 11.028 6 Median 0.8988 1.2437 5.9456 4 0 Median 0.64929 1.0174 3.2801 2 0 Median 215790000 121530000 94253000 117480000 60730000 56753000 98302000 60803000 37500000 13238 1766 13590 48104;48105;48106;48107;48108;48109 72533;72534;72535;72536;72537;72538;72539;72540;72541;72542;72543;72544;72545 72540 13 VREVAATVHR HIILVINAGKHKSSKVREVAATVHRKLKTF HKSSKVREVAATVHRKLKTFMEITLEEDSI K V R H R K 2 2 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 3 0 0 10 1 1136.6414 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 1101 1110 NCAPG2 Condensin-2 complex subunit G2 yes no 3 0.030837 57.175 1 0.74058 1.0208 NaN 1 Median 0.74058 1.0208 NaN 1 0 Median NaN NaN NaN 0 0 Median 5077000 3019600 2057400 5077000 3019600 2057400 0 0 0 13239 1621 13591 48110 72546 72546 1 VREYELR VRGAKAEEILEKGLKVREYELRKNNFSDTG EILEKGLKVREYELRKNNFSDTGNFGFGIQ K V R L R K 0 2 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 7 1 963.51378 Q5VVD0;P62913;Q5VVC8;Q08ES8;Q5VVC9 Q5VVD0 89 95 RPL11 60S ribosomal protein L11 yes no 2;3 0.00037222 155.75 5 4 0.64021 0.94269 4.7171 9 Median 0.68116 0.92508 3.3438 5 0 Median 0.61072 0.9516 5.1037 4 0 Median 885930000 532190000 353740000 548770000 331100000 217670000 337170000 201100000 136070000 13240 1416 13592 48111;48112;48113;48114;48115;48116;48117;48118;48119 72547;72548;72549;72550;72551;72552;72553;72554;72555;72556;72557;72558 72554 12 VREYELRK VRGAKAEEILEKGLKVREYELRKNNFSDTG ILEKGLKVREYELRKNNFSDTGNFGFGIQE K V R R K N 0 2 0 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 8 2 1091.6087 Q5VVD0;P62913;Q5VVC8;Q08ES8;Q5VVC9 Q5VVD0 89 96 RPL11 60S ribosomal protein L11 yes no 2;3 0.00015429 137.13 5 0.7178 0.88353 18.496 5 Median 0.7178 0.88353 18.496 5 0 Median NaN NaN NaN 0 0 Median 346040000 196210000 149830000 346040000 196210000 149830000 0 0 0 13241 1416 13593 48120;48121;48122;48123;48124 72559;72560;72561;72562;72563;72564;72565;72566 72559 8 VRFLEQQNQVLQTK QIKSLNNQFASFIDKVRFLEQQNQVLQTKW KVRFLEQQNQVLQTKWELLQQVDTSTRTHN K V R T K W 0 1 1 0 0 4 1 0 0 0 2 1 0 1 0 0 1 0 0 2 0 0 14 1 1729.9475 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2;CON__P35908;P35908 H6VRG3 198 211 KRT1;KRT2 Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 2 epidermal no no 3 1.3404E-27 161.49 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17109000 17109000 0 17109000 17109000 0 0 0 0 + 13242 1113;1114;964 13594 48125;48126 72567;72568 72567 2 VRLTLPHSIR FLMVVLWKIPSKELRVRLTLPHSIRSDSED SKELRVRLTLPHSIRSDSEDICLFTKDEPN R V R I R S 0 2 0 0 0 0 0 0 1 1 2 0 0 0 1 1 1 0 0 1 0 0 10 1 1190.7248 O76021;Q32Q62;J3QSV6;A0PJ61;A0PJ87;I3L3U9;I3L3C4;I3L234 O76021 80 89 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 3 0.025164 33.057 1 0.73287 0.96786 NaN 1 Median 0.73287 0.96786 NaN 1 0 Median NaN NaN NaN 0 0 Median 5454100 3722500 1731600 5454100 3722500 1731600 0 0 0 13243 1210 13595 48127 72569 72569 1 VRPASSAASVYAGAGGSGSR TNYRSLGSVRTPSQRVRPASSAASVYAGAG SAASVYAGAGGSGSRISVSRSVWGGSVGSA R V R S R I 5 2 0 0 0 0 0 4 0 0 0 0 0 0 1 5 0 0 1 2 0 0 20 1 1806.8973 CON__P05784 CON__P05784 27 46 yes yes 3 4.7004E-07 90.017 3 0.325 0.4336 NaN 1 Median 0.325 0.4336 NaN 1 0 Median NaN NaN NaN 0 0 Median 35621000 31431000 4189900 35621000 31431000 4189900 0 0 0 + 13244 954 13596 48128;48129;48130 72570;72571;72572 72572 3 VRPCVVYGGADIGQQIR VQIYEEARKFSYRSRVRPCVVYGGADIGQQ PCVVYGGADIGQQIRDLERGCHLLVATPGR R V R I R D 1 2 0 1 1 2 0 3 0 2 0 0 0 0 1 0 0 0 1 3 0 0 17 1 1886.9785 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1;A0A024R9A4;O15523;B4DLU5;B4E010 A0A0D9SFB3 295 311 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 3 6.0098E-15 151.73 3 0.49717 0.6685 11.685 3 Plateau 0.49717 0.6685 11.685 3 0 Plateau NaN NaN NaN 0 0 Median 85810000 57396000 28414000 85810000 57396000 28414000 0 0 0 13245 432 13597 48131;48132;48133 72573;72574;72575;72576 72574 4 VRPEGTCEEASLPLER PEHCLPKKKPKLKEKVRPEGTCEEASLPLE RPEGTCEEASLPLERTLKGPECAAAATAGK K V R E R T 1 2 0 0 1 0 4 1 0 0 2 0 0 0 2 1 1 0 0 1 0 0 16 1 1841.8942 Q7Z5J4 Q7Z5J4 1723 1738 RAI1 Retinoic acid-induced protein 1 yes yes 3 0.0038641 92.427 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1653400 1653400 0 1653400 1653400 0 0 0 0 13246 1617 13598 48134 72577 72577 1 VRPGETLLIHSGSGGVGQAAIAIALSLGCR VVYSTAYYALVVRGRVRPGETLLIHSGSGG VGQAAIAIALSLGCRVFTTVGSAEKRAYLQ R V R C R V 4 2 0 0 1 1 1 6 1 3 4 0 0 0 1 3 1 0 0 2 0 0 30 1 2959.6026 A0A0U1RQF0;P49327;Q6PJJ3 A0A0U1RQF0 1663 1692 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 4 4.6014E-08 51.568 1 0.5758 0.7577 NaN 1 Median 0.5758 0.7577 NaN 1 0 Median NaN NaN NaN 0 0 Median 11388000 7255500 4132100 11388000 7255500 4132100 0 0 0 13247 486 13599 48135 72578 72578 1 VRPGFCFHLCSR ASKTNLEQRKGRAGRVRPGFCFHLCSRARF AGRVRPGFCFHLCSRARFERLETHMTPEMF R V R S R A 0 2 0 0 2 0 0 1 1 0 1 0 0 2 1 1 0 0 0 1 0 0 12 1 1534.7286 Q08211;B3KU66 Q08211 768 779 DHX9 ATP-dependent RNA helicase A yes no 3;4 0.0011879 77.279 8 2 0.75306 1.0147 63.161 9 Plateau 0.72413 1.0514 18.334 7 0 Plateau 0.17956 0.24 55.749 2 0 Median 257740000 152100000 105640000 247430000 143870000 103560000 10311000 8235500 2075900 13248 1448 13600 48136;48137;48138;48139;48140;48141;48142;48143;48144;48145 72579;72580;72581;72582;72583;72584;72585;72586;72587;72588;72589;72590;72591 72584 13 VRPLGFPDQECCIEVINNTTVQLHTPEGYR GSQTNLKDPVGVYCRVRPLGFPDQECCIEV INNTTVQLHTPEGYRLNRNGDYKETQYSFK R V R Y R L 0 2 2 1 2 2 3 2 1 2 2 0 0 1 3 0 3 0 1 3 0 0 30 1 3541.7082 H7BYN4;Q02241;H0YME6;H0YMJ4 H7BYN4 32 61 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 4 2.0089E-17 104.77 4 0.77691 1.0561 21.752 4 Median 0.77691 1.0561 21.752 4 0 Median NaN NaN NaN 0 0 Median 44988000 26752000 18236000 44988000 26752000 18236000 0 0 0 13249 1117 13601 48146;48147;48148;48149 72592;72593;72594;72595;72596;72597;72598 72597 7 VRPLLPSELER VPSEDSMEKVKVYLRVRPLLPSELERQEDQ VYLRVRPLLPSELERQEDQGCVRIENVETL R V R E R Q 0 2 0 0 0 0 2 0 0 0 3 0 0 0 2 1 0 0 0 1 0 0 11 1 1307.7561 O95235;D6RBN1;D6R9E4 O95235 71 81 KIF20A Kinesin-like protein KIF20A;Kinesin-like protein yes no 2;3 0.0016331 76.165 5 4 0.74686 1.0225 19.984 9 Median 0.83511 1.1134 6.6165 5 0 Median 0.48598 0.7567 2.4963 4 0 Median 319440000 197740000 121700000 153220000 83607000 69612000 166220000 114130000 52092000 13250 1215 13602 48150;48151;48152;48153;48154;48155;48156;48157;48158 72599;72600;72601;72602;72603;72604;72605;72606;72607;72608;72609 72604 11 VRPSTGNSASTPQSQCLPSEIEVK TMALQQKKALSKTSKVRPSTGNSASTPQSQ STPQSQCLPSEIEVKYKMAECYTMLKQDKD K V R V K Y 1 1 1 0 1 2 2 1 0 1 1 1 0 0 3 5 2 0 0 2 0 0 24 1 2571.2599 B3KMP2;Q2M2R1;Q4KMX6;A8KAQ7;A5D8X2;A0A024RBJ3;Q9UJX3 B3KMP2 82 105 ANAPC7 Anaphase-promoting complex subunit 7 yes no 3 3.6697E-08 88.627 2 0.44146 0.61212 NaN 1 Median 0.44146 0.61212 NaN 1 0 Median NaN NaN NaN 0 0 Median 4048600 3314900 733760 4048600 3314900 733760 0 0 0 13251 276 13603 48159;48160 72610;72611;72612 72611 3 VRPVLPGEPTPPPGLLLFPSGPGGPSDPPTR NQLQELKGNIRVFCRVRPVLPGEPTPPPGL LFPSGPGGPSDPPTRLSLSRSDERRGTLSG R V R T R L 0 2 0 1 0 0 1 5 0 0 4 0 0 1 11 2 2 0 0 2 0 0 31 1 3100.671 A0A024RCS7;Q9BW19;B4DMA8;B4E063 A0A024RCS7 317 347 KIFC1 Kinesin-like protein;Kinesin-like protein KIFC1 yes no 3 1.3251E-21 114.24 4 0.67455 0.91023 10.482 4 Median 0.67455 0.91023 10.482 4 0 Median NaN NaN NaN 0 0 Median 60543000 36203000 24340000 60543000 36203000 24340000 0 0 0 13252 303 13604 48161;48162;48163;48164 72613;72614;72615;72616;72617;72618;72619;72620;72621;72622 72616 10 VRTDITYPAGFMDVISIDK VKKICMQRFIKIDGKVRTDITYPAGFMDVI ITYPAGFMDVISIDKTGENFRLIYDTKGRF K V R D K T 1 1 0 3 0 0 0 1 0 3 0 1 1 1 1 1 2 0 1 2 0 0 19 1 2140.0874 B2R491;P62701;Q96IR1;Q53HV1 B2R491 76 94 RPS4X 40S ribosomal protein S4;40S ribosomal protein S4, X isoform yes no 3 4.1999E-13 99.407 6 2 0.78707 1.0683 34.028 7 Median 0.84171 1.1022 21.905 5 0 Median 0.40015 0.67405 4.0397 2 0 Median 152380000 84906000 67475000 90500000 41272000 49228000 61881000 43633000 18247000 13253 681 13605;13606 48165;48166;48167;48168;48169;48170;48171;48172 72623;72624;72625;72626;72627;72628;72629;72630;72631;72632;72633;72634;72635;72636;72637 72629 235 14 VRVELSNGEK DAVRELDGRTLCGCRVRVELSNGEKRSRNR LCGCRVRVELSNGEKRSRNRGPPPSWGRRP R V R E K R 0 1 1 0 0 0 2 1 0 0 1 1 0 0 0 1 0 0 0 2 0 0 10 1 1129.6091 B2R6F3;P84103 B2R6F3 76 85 SFRS3;SRSF3 Serine/arginine-rich splicing factor 3 yes no 2;3 4.8178E-07 139.15 4 2 0.44842 0.63928 55.04 4 Median 0.29737 0.3877 9.4289 2 0 Median 0.65399 1.0009 2.1009 2 0 Median 71868000 57729000 14140000 57665000 49146000 8519400 14203000 8582500 5620400 13254 698 13607 48173;48174;48175;48176;48177;48178 72638;72639;72640;72641;72642;72643 72641 6 VRYSLDPENPTK ______________________________ ______________________________ M V R T K S 0 1 1 1 0 0 1 0 0 0 1 1 0 0 2 1 1 0 1 1 0 0 12 1 1417.7201 A0A087WXM6;J3QQT2;J3KRX5;A0A024R261;A0A0A6YYL6;P18621;J3KRB3;A0A087WWH0;J3QS96;A0A087WY81;J3KSJ0 A0A087WXM6 2 13 RPL17;hCG_24487;RPL17-C18orf32 60S ribosomal protein L17 yes no 2;3 4.0252E-09 131.79 6 0.78779 1.0379 2.4301 4 Median 0.78779 1.0379 2.4301 4 0 Median NaN NaN NaN 0 0 Median 122000000 70001000 52003000 122000000 70001000 52003000 0 0 0 13255 81 13608 48179;48180;48181;48182;48183;48184 72644;72645;72646;72647;72648;72649;72650;72651 72651 8 VSANSVYGFTGAQVGK PLRRQVLDGRQLALKVSANSVYGFTGAQVG SANSVYGFTGAQVGKLPCLEISQSVTGFGR K V S G K L 2 0 1 0 0 1 0 3 0 0 0 1 0 1 0 2 1 0 1 3 0 0 16 0 1583.7944 A0A024R4F4;Q308M6;M0R2B7;P28340;M0QZR8;Q59FA0 A0A024R4F4 695 710 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 2 0.00010552 108.32 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2797700 2797700 0 2797700 2797700 0 0 0 0 13256 123 13609 48185;48186 72652;72653;72654 72654 3 VSASLPR LSSLRSRSTQMESTRVSASLPRSYRKTDTV STQMESTRVSASLPRSYRKTDTVRLTSVVT R V S P R S 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 2 0 0 0 1 0 0 7 0 728.41809 A0A1P7ZIM8;F8WD26;F8J2B5;J3KP06;Q8WWI1;E9PMS6;B7Z8W3;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424 A0A1P7ZIM8 506 512 LMO7 LIM domain only protein 7 yes no 2 0.02391 70.912 1 0.49187 0.65134 NaN 1 Median 0.49187 0.65134 NaN 1 0 Median NaN NaN NaN 0 0 Median 12017000 7748400 4268700 12017000 7748400 4268700 0 0 0 13257 525 13610 48187 72655 72655 1 VSASPLLYTLIEK YINLDKAVLGTSNFKVSASPLLYTLIEKTM FKVSASPLLYTLIEKTMQNVKHPVTGQFLY K V S E K T 1 0 0 0 0 0 1 0 0 1 3 1 0 0 1 2 1 0 1 1 0 0 13 0 1432.8177 A8K6Q8;P02786;G3V0E5;B7Z2I6 A8K6Q8 496 508 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 0.011135 95.618 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1467900 1467900 0 1467900 1467900 0 0 0 0 13258 626 13611 48188;48189 72656;72657 72656 2 VSCAHIYSALDPTAR KHHAEYLTELLTTQRVSCAHIYSALDPTAR VSCAHIYSALDPTARKINLAKFTLGKCSTL R V S A R K 3 1 0 1 1 0 0 0 1 1 1 0 0 0 1 2 1 0 1 1 0 0 15 0 1659.8039 Q8TDD1 Q8TDD1 363 377 DDX54 ATP-dependent RNA helicase DDX54 yes yes 3 1.1973E-06 115.04 4 1 0.75498 1.0244 26.724 5 Median 0.80952 1.0905 8.5188 4 0 Median 0.45974 0.61426 NaN 1 0 Median 97086000 53180000 43906000 91594000 49775000 41818000 5492700 3404600 2088100 13259 1658 13612 48190;48191;48192;48193;48194 72658;72659;72660;72661;72662;72663;72664;72665 72660 8 VSDEYEQLSSEALEAAR ______________________________ DEYEQLSSEALEAARICANKYMVKSCGKDG M V S A R I 3 1 0 1 0 1 4 0 0 0 2 0 0 0 0 3 0 0 1 1 0 0 17 0 1895.8749 F8W7C6 F8W7C6 2 18 RPL10 yes yes 2 5.1479E-53 197.38 5 0.76935 1.0645 7.7031 2 Median 0.76935 1.0645 7.7031 2 0 Median NaN NaN NaN 0 0 Median 16234000 6788400 9446000 16234000 6788400 9446000 0 0 0 13260 1071 13613 48195;48196;48197;48198;48199 72666;72667;72668;72669;72670;72671;72672;72673 72670 8 VSDVEELTPPEHLSDLPPFSR LIAGPVVEISHQLRKVSDVEELTPPEHLSD LTPPEHLSDLPPFSRCLIGIIIKSSNVVRS K V S S R C 0 1 0 2 0 0 3 0 1 0 3 0 0 1 4 3 1 0 0 2 0 0 21 0 2363.1645 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5;B4DHE5;B4DXB7 Q86XI2 1026 1046 NCAPG2 Condensin-2 complex subunit G2 yes no 3 3.9574E-08 93.92 4 1 0.70716 0.94682 9.0088 5 Median 0.70889 0.95263 3.4034 4 0 Median 0.52261 0.7964 NaN 1 0 Median 116860000 66088000 50770000 96845000 52844000 44001000 20013000 13245000 6768200 13261 1621 13614 48200;48201;48202;48203;48204 72674;72675;72676;72677;72678;72679;72680;72681;72682;72683 72678 10 VSEFNVSSEGSGEK KNRRKLAERSEASLKVSEFNVSSEGSGEKL KVSEFNVSSEGSGEKLVLADLLEPVKTSSS K V S E K L 0 0 1 0 0 0 3 2 0 0 0 1 0 1 0 4 0 0 0 2 0 0 14 0 1454.6525 Q9BVJ6;O60531 Q9BVJ6 71 84 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 2.772E-40 209.19 4 2 1.0472 1.3183 5.0066 6 Median 1.0834 1.3692 3.959 4 0 Median 0.78544 1.2576 2.4097 2 0 Median 232740000 123830000 108910000 116410000 58708000 57702000 116330000 65127000 51207000 13262 1719 13615 48205;48206;48207;48208;48209;48210 72684;72685;72686;72687;72688;72689;72690;72691;72692;72693 72685 10 VSEGGPAEIAGLQIGDK PFSEDKTDKGIYVTRVSEGGPAEIAGLQIG EGGPAEIAGLQIGDKIMQVNGWDMTMVTHD R V S D K I 2 0 0 1 0 1 2 4 0 2 1 1 0 0 1 1 0 0 0 1 0 0 17 0 1639.8417 O14907 O14907 60 76 TAX1BP3 Tax1-binding protein 3 yes yes 2 2.8242E-07 73.927 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5434700 5434700 0 5434700 5434700 0 0 0 0 13263 1170 13616 48211;48212 72694;72695 72695 2 VSEIPLTR GFPSYCQSLKILGEKVSEIPLTRDNVSEIL LKILGEKVSEIPLTRDNVSEILRCFLMAYG K V S T R D 0 1 0 0 0 0 1 0 0 1 1 0 0 0 1 1 1 0 0 1 0 0 8 0 913.52328 J3QK86;J3KPG5;F8VU39;Q9UIF9 J3QK86 895 902 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 0.012359 101.28 3 2 0.80055 1.1165 23.549 2 Median 0.71903 0.94522 NaN 1 0 Median 0.89131 1.3188 NaN 1 0 Median 21133000 8026400 13107000 11629000 4798300 6830700 9504400 3228100 6276200 13264 1062 13617 48213;48214;48215;48216;48217 72696;72697;72698;72699;72700;72701 72698 6 VSELVQFLLIK APAVGPRSQKQLELKVSELVQFLLIKDQKK LELKVSELVQFLLIKDQKKIPIKRADILKH K V S I K D 0 0 0 0 0 1 1 0 0 1 3 1 0 1 0 1 0 0 0 2 0 0 11 0 1287.7802 Q96MG7 Q96MG7 89 99 NDNL2 Melanoma-associated antigen G1 yes yes 2 0.0121 55.549 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 675920 675920 0 675920 675920 0 0 0 0 13265 1694 13618 48218 72702 72702 1 VSFELFADK TVFFDIAVDGEPLGRVSFELFADKVPKTAE GEPLGRVSFELFADKVPKTAENFRALSTGE R V S D K V 1 0 0 1 0 0 1 0 0 0 1 1 0 2 0 1 0 0 0 1 0 0 9 0 1054.5335 B4DM82;V9HWF5;A8K486;P62937;F8WE65;C9J5S7;B2RE56;Q71V99 B4DM82 20 28 HEL-S-69p;PPIA Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 2 0.02236 50.805 2 0.39746 0.50342 7.1705 2 Median 0.39746 0.50342 7.1705 2 0 Median NaN NaN NaN 0 0 Median 23642000 17002000 6639800 23642000 17002000 6639800 0 0 0 13266 601 13619 48219;48220 72703;72704;72705 72704 3 VSFGGHLRPELFDENLPPNTPLK DSINESEGIPLKRRRVSFGGHLRPELFDEN PELFDENLPPNTPLKRGEAPTKRKSLVMHT R V S L K R 0 1 2 1 0 0 2 2 1 0 4 1 0 2 4 1 1 0 0 1 0 0 23 1 2576.3387 P46013;Q70L73 P46013 506 528 MKI67 Antigen KI-67 no no 3;4 0.014742 35.17 3 0.91666 1.2064 16.546 3 Median 0.91666 1.2064 16.546 3 0 Median NaN NaN NaN 0 0 Median 78812000 40084000 38728000 78812000 40084000 38728000 0 0 0 13267 1342;1604 13620 48221;48222;48223 72706;72707;72708;72709;72710 72707 5 VSFGVSEQQAVEAWEK KVQENSAYICSRRQRVSFGVSEQQAVEAWE SFGVSEQQAVEAWEKLTREEGTPLTLYYSH R V S E K L 2 0 0 0 0 2 3 1 0 0 0 1 0 1 0 2 0 1 0 3 0 0 16 0 1792.8632 Q9Y3T9;B3KNC3;Q9H9J5;Q8NAK7 Q9Y3T9 591 606 NOC2L Nucleolar complex protein 2 homolog yes no 2 0.00090203 46.481 1 0.73184 1.1118 NaN 1 Median NaN NaN NaN 0 0 Median 0.73184 1.1118 NaN 1 0 Median 10674000 4853300 5820900 0 0 0 10674000 4853300 5820900 13268 1820 13621 48224 72711 72711 1 VSFLLPTLR SLEGNPFLTVNDNLKVSFLLPTLRKVNGKD VNDNLKVSFLLPTLRKVNGKDASSTYSQVE K V S L R K 0 1 0 0 0 0 0 0 0 0 3 0 0 1 1 1 1 0 0 1 0 0 9 0 1044.6332 A0A140VJD0;Q9UFC0;H7C5S6;Q59FT0 A0A140VJD0 112 120 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes no 2 0.0034018 104.06 3 0.52804 0.70627 12.408 3 Median 0.52804 0.70627 12.408 3 0 Median NaN NaN NaN 0 0 Median 11964000 7429600 4534700 11964000 7429600 4534700 0 0 0 13269 493 13622 48225;48226;48227 72712;72713;72714;72715;72716;72717 72714 6 VSFLTR MDEDDLQLMKDLGQRVSFLTRDLSSSEPVH QLMKDLGQRVSFLTRDLSSSEPVHAKKRKH R V S T R D 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 1 0 0 6 0 721.41227 A8K905;Q8WTT2 A8K905 107 112 NOC3L Nucleolar complex protein 3 homolog yes no 2 0.034587 111.69 3 0.84286 1.1488 9.1564 3 Median 0.84286 1.1488 9.1564 3 0 Median NaN NaN NaN 0 0 Median 37586000 21665000 15922000 37586000 21665000 15922000 0 0 0 13270 643 13623 48228;48229;48230 72718;72719;72720;72721 72721 4 VSFSYAGLSGDDPDLGPAHVVTVIAR YHSENPKYPEVGDLRVSFSYAGLSGDDPDL DPDLGPAHVVTVIARQRGDQLVPFSTKSGD R V S A R Q 3 1 0 3 0 0 0 3 1 1 2 0 0 1 2 3 1 0 1 4 0 0 26 0 2642.334 A0A024R2F9;Q9BTV4;Q8TEP9 A0A024R2F9 241 266 TMEM43;FLJ00144 Transmembrane protein 43 yes no 3 5.0623E-07 53.475 1 1 0.61317 0.80498 NaN 1 Median 0.61317 0.80498 NaN 1 0 Median NaN NaN NaN 0 0 Median 15894000 12355000 3539100 8238100 4699000 3539100 7655700 7655700 0 13271 83 13624 48231;48232 72722;72723;72724 72722 3 VSGHVITDIVEGK QGGTSVVIANGTHPKVSGHVITDIVEGKKV PKVSGHVITDIVEGKKVGTFFSEVKPAGPT K V S G K K 0 0 0 1 0 0 1 2 1 2 0 1 0 0 0 1 1 0 0 3 0 0 13 0 1352.73 P54886 P54886 335 347 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 3 0.0068909 33.304 1 1.4682 1.8531 NaN 1 Median 1.4682 1.8531 NaN 1 0 Median NaN NaN NaN 0 0 Median 10661000 6189300 4472000 10661000 6189300 4472000 0 0 0 13272 1375 13625 48233 72725;72726 72726 2 VSGHVITDIVEGKK QGGTSVVIANGTHPKVSGHVITDIVEGKKV KVSGHVITDIVEGKKVGTFFSEVKPAGPTV K V S K K V 0 0 0 1 0 0 1 2 1 2 0 2 0 0 0 1 1 0 0 3 0 0 14 1 1480.8249 P54886 P54886 335 348 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 3 0.013933 17.962 1 2.1207 2.5626 NaN 1 Median 2.1207 2.5626 NaN 1 0 Median NaN NaN NaN 0 0 Median 5156900 1486600 3670300 5156900 1486600 3670300 0 0 0 13273 1375 13626 48234 72727 72727 1 VSGNPQVHIK KAQDSKAYSKITEGKVSGNPQVHIKNVKED ITEGKVSGNPQVHIKNVKEDSTADDSKDSV K V S I K N 0 0 1 0 0 1 0 1 1 1 0 1 0 0 1 1 0 0 0 2 0 0 10 0 1077.5931 P46013 P46013 151 160 MKI67 Antigen KI-67 yes yes 2;3 1.5633E-08 143.28 6 3 1.0281 1.2899 18.507 9 Median 0.97546 1.2433 11.64 6 0 Median 1.0637 1.7101 3.7536 3 0 Median 353420000 172010000 181410000 233630000 116380000 117250000 119790000 55630000 64161000 13274 1342 13627 48235;48236;48237;48238;48239;48240;48241;48242;48243 72728;72729;72730;72731;72732;72733;72734;72735;72736;72737;72738;72739;72740;72741;72742 72729 15 VSGTLDTPEK QTSTKGQVLRKKKKKVSGTLDTPEKTVDSQ KKKKKVSGTLDTPEKTVDSQGPTPVCTPTF K V S E K T 0 0 0 1 0 0 1 1 0 0 1 1 0 0 1 1 2 0 0 1 0 0 10 0 1045.5292 Q9BYG3;C9J808;H7BZL0 Q9BYG3 217 226 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2 1.4548E-11 144.09 2 2 0.65999 0.91398 25.566 4 Median 0.87432 1.0916 7.4319 2 0 Median 0.47742 0.72478 15.115 2 0 Median 158840000 88434000 70402000 117580000 61768000 55813000 41253000 26665000 14588000 13275 1726 13628 48244;48245;48246;48247 72743;72744;72745;72746;72747;72748 72745 6 VSHLLGINVTDFTR NTDQASMPDNTAAQKVSHLLGINVTDFTRG KVSHLLGINVTDFTRGILTPRIKVGRDYVQ K V S T R G 0 1 1 1 0 0 0 1 1 1 2 0 0 1 0 1 2 0 0 2 0 0 14 0 1570.8467 A0A024R1N1;P35579;Q86XU5;B4E3S1 A0A024R1N1 374 387 MYH9 Myosin-9 yes no 2;3 6.3999E-10 120.29 6 0.96137 1.3281 14.946 6 Median 0.96137 1.3281 14.946 6 0 Median NaN NaN NaN 0 0 Median 703860000 358020000 345840000 703860000 358020000 345840000 0 0 0 13276 61 13629 48248;48249;48250;48251;48252;48253 72749;72750;72751;72752;72753;72754;72755;72756;72757;72758;72759;72760;72761;72762;72763 72753 15 VSIAVLR VLKEAKRIPEEILGKVSIAVLRGLAYLREK IPEEILGKVSIAVLRGLAYLREKHQIMHRD K V S L R G 1 1 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 2 0 0 7 0 756.48577 P36507;A0A1B0GUL7;Q7Z370;G5E9C7 P36507 173 179 MAP2K2;DKFZp686L02273 Dual specificity mitogen-activated protein kinase kinase 2 yes no 2 0.037967 55.441 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13277 1324 13630 48254 72764 72764 1 VSILSTFLAPFK KSKRRRRRRSKRKDKVSILSTFLAPFKHLS KDKVSILSTFLAPFKHLSPGITNTEDDDTL K V S F K H 1 0 0 0 0 0 0 0 0 1 2 1 0 2 1 2 1 0 0 1 0 0 12 0 1321.7646 Q9NS39 Q9NS39 36 47 ADARB2 Double-stranded RNA-specific editase B2 yes yes 2 0.00057763 107.79 4 0.68563 0.88234 50.078 2 Median 0.68563 0.88234 50.078 2 0 Median NaN NaN NaN 0 0 Median 5460100 2565100 2895000 5460100 2565100 2895000 0 0 0 13278 1757 13631 48255;48256;48257;48258 72765;72766;72767;72768;72769 72769 5 VSISEGDDKIEYR TKNLVPGESVYGEKRVSISEGDDKIEYRAW KRVSISEGDDKIEYRAWNPFRSKLAAAILG R V S Y R A 0 1 0 2 0 0 2 1 0 2 0 1 0 0 0 2 0 0 1 1 0 0 13 1 1509.7311 Q96BS4;P22087;M0R299;M0QXL5;M0R2Q4;B4DLD4;M0R0P1;M0R2U2;M0R1H0;M0R2B0 Q96BS4 62 74 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2;3 4.6109E-16 157.03 6 4 0.65631 0.85619 15.893 10 Median 0.7011 0.92979 15.303 6 0 Median 0.44965 0.78589 3.1179 4 0 Median 505120000 329250000 175870000 171260000 100140000 71118000 333860000 229110000 104750000 13279 1288 13632 48259;48260;48261;48262;48263;48264;48265;48266;48267;48268 72770;72771;72772;72773;72774;72775;72776;72777;72778;72779;72780;72781;72782;72783;72784;72785;72786;72787;72788 72787 19 VSIVNQYGK MVGVGPKGEESMAARVSIVNQYGKCVYDKY ESMAARVSIVNQYGKCVYDKYVKP______ R V S G K C 0 0 1 0 0 1 0 1 0 1 0 1 0 0 0 1 0 0 1 2 0 0 9 0 1006.5447 A0A0C4DG22;B4E331;B4DJ95;Q9GZR2 A0A0C4DG22 172 180 REXO4 RNA exonuclease 4 yes no 2 0.00028642 77.923 2 2 0.7376 1.004 16.138 2 Median 0.71157 0.89573 NaN 1 0 Median 0.7646 1.1254 NaN 1 0 Median 17685000 11723000 5962700 6035800 3672700 2363100 11650000 8049900 3599600 13280 422 13633 48269;48270;48271;48272 72789;72790;72791;72792 72790 4 VSLDVNHFAPDELTVK SSGVSEIRHTADRWRVSLDVNHFAPDELTV SLDVNHFAPDELTVKTKDGVVEITGKHEER R V S V K T 1 0 1 2 0 0 1 0 1 0 2 1 0 1 1 1 1 0 0 3 0 0 16 0 1782.9152 V9HW43;P04792;B4DL87;F8WE04 V9HW43 97 112 HEL-S-102;HSPB1 Heat shock protein beta-1 yes no 2;3 1.3107E-26 178.68 6 2 0.36532 0.4839 101.83 8 Median 0.36428 0.48127 53.921 6 0 Median 2.5321 4.0133 6.622 2 0 Median 1110700000 724590000 386160000 907210000 666030000 241190000 203530000 58565000 144970000 13281 1232 13634 48273;48274;48275;48276;48277;48278;48279;48280 72793;72794;72795;72796;72797;72798;72799;72800;72801;72802;72803;72804;72805;72806 72795 13 VSLGIDICHPDTFSYPIER LPCKENPGPSYARRRVSLGIDICHPDTFSY IDICHPDTFSYPIERGRILNWEGVQYLWSF R V S E R G 0 1 0 2 1 0 1 1 1 3 1 0 0 1 2 2 1 0 1 1 0 0 19 0 2218.0729 Q9H568 Q9H568 51 69 ACTL8 Actin-like protein 8 yes yes 3 3.5739E-05 81.01 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23312000 23312000 0 23312000 23312000 0 0 0 0 13282 1735 13635 48281;48282 72807;72808 72808 2 VSLLGPVTTPEHQLLK ENSNAFSTPQTPDIKVSLLGPVTTPEHQLL SLLGPVTTPEHQLLKTPSSSSLSQRVRSTL K V S L K T 0 0 0 0 0 1 1 1 1 0 4 1 0 0 2 1 2 0 0 2 0 0 16 0 1730.9931 B2RE34;A0A024R136;Q9H0H5;Q9H9L9 B2RE34 572 587 RACGAP1 Rac GTPase-activating protein 1 yes no 3 0.00017157 49.559 2 0.76914 1.1591 12.589 2 Median NaN NaN NaN 0 0 Median 0.76914 1.1591 12.589 2 0 Median 34559000 20463000 14096000 0 0 0 34559000 20463000 14096000 13283 49 13636 48283;48284 72809;72810;72811;72812 72811 4 VSLLNEQFLPLIR EYISYSSQEEMDSNKVSLLNEQFLPLIRLL NKVSLLNEQFLPLIRLLESKYPRTLDVVLE K V S I R L 0 1 1 0 0 1 1 0 0 1 4 0 0 1 1 1 0 0 0 1 0 0 13 0 1540.8977 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7 B2RWN5 418 430 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 3.7005E-94 284.73 4 0.80674 1.0954 11.836 4 Median 0.80674 1.0954 11.836 4 0 Median NaN NaN NaN 0 0 Median 308250000 165890000 142350000 308250000 165890000 142350000 0 0 0 13284 748 13637 48285;48286;48287;48288 72813;72814;72815;72816 72813 4 VSLYGYLR TNPEDIRTNIKCDRKVSLYGYLRGAHLKNK NIKCDRKVSLYGYLRGAHLKNKSQIHMPGV K V S L R G 0 1 0 0 0 0 0 1 0 0 2 0 0 0 0 1 0 0 2 1 0 0 8 0 969.52837 Q14692 Q14692 280 287 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.012971 85.359 4 1 0.98685 1.3146 3.1844 3 Median 1.0099 1.3498 3.7298 2 0 Median 0.90932 1.3087 NaN 1 0 Median 81857000 49066000 32790000 68608000 42178000 26430000 13249000 6888600 6360400 13285 1495 13638 48289;48290;48291;48292;48293 72817;72818;72819;72820;72821;72822;72823 72821 7 VSPEEVTIYNHPGIQAELR PLSASIELILVEDVRVSPEEVTIYNHPGIQ EVTIYNHPGIQAELRIREGSGYFFLNTSTA R V S L R I 1 1 1 0 0 1 3 1 1 2 1 0 0 0 2 1 1 0 1 2 0 0 19 0 2151.096 Q8TEM1 Q8TEM1 897 915 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 3 0.0002322 79.393 3 0.60587 0.83598 10.397 3 Median 0.60587 0.83598 10.397 3 0 Median NaN NaN NaN 0 0 Median 25847000 16106000 9741500 25847000 16106000 9741500 0 0 0 13286 1661 13639 48294;48295;48296 72824;72825;72826 72824 3 VSQEHPVVLTK FSEDEMKKFLEEATRVSQEHPVVLTKFVEG EATRVSQEHPVVLTKFVEGAREVEMDAVGK R V S T K F 0 0 0 0 0 1 1 0 1 0 1 1 0 0 1 1 1 0 0 3 0 0 11 0 1235.6874 Q5R210;Q5R208;Q5R206;A8K134;A0A024R454;P31327;Q5R209 Q5R210 1158 1168 CPS1 Carbamoyl-phosphate synthase [ammonia], mitochondrial yes no 2 0.017985 91.961 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13287 116 13640 48297 72827 72827 1 VSQTPESLDFLK ARPPLPRQQSTSSDRVSQTPESLDFLKVPD SDRVSQTPESLDFLKVPDQGAAGVRRQTTS R V S L K V 0 0 0 1 0 1 1 0 0 0 2 1 0 1 1 2 1 0 0 1 0 0 12 0 1362.7031 Q4KMR3;Q12965 Q4KMR3 1008 1019 MYO1E Unconventional myosin-Ie yes no 2 0.00041473 118.23 3 1 0.57943 0.72557 5.6175 3 Median 0.57943 0.72557 5.6175 3 0 Median NaN NaN NaN 0 0 Median 41552000 22040000 19511000 37719000 22040000 15679000 3832900 0 3832900 13288 1459 13641 48298;48299;48300;48301 72828;72829;72830;72831;72832;72833 72832 5 VSRDTLYEAVR ______________________________ MSSKVSRDTLYEAVREVLHGNQRKRRKFLE K V S V R E 1 2 0 1 0 0 1 0 0 0 1 0 0 0 0 1 1 0 1 2 0 0 11 1 1307.6834 P62906 P62906 5 15 RPL10A 60S ribosomal protein L10a yes yes 3 0.00027372 70.54 4 1 0.81192 1.1011 9.4009 5 Median 0.81533 1.1078 1.52 4 0 Median 0.63428 0.90144 NaN 1 0 Median 197820000 108240000 89579000 189460000 103180000 86283000 8358400 5062000 3296400 13289 1415 13642 48302;48303;48304;48305;48306 72834;72835;72836;72837;72838;72839;72840;72841 72840 8 VSSLMWEVR LSTIKQRLENRFYRRVSSLMWEVRYIEHNT NRFYRRVSSLMWEVRYIEHNTRTFNEPGSP R V S V R Y 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 2 0 1 0 2 0 0 9 0 1105.559 Q8WWQ0;Q9NWP3 Q8WWQ0 1221 1229 PHIP PH-interacting protein yes no 2 0.0086662 55.549 2 0.58622 0.79238 NaN 1 Median NaN NaN NaN 0 0 Median 0.58622 0.79238 NaN 1 0 Median 8495200 6395900 2099400 0 0 0 8495200 6395900 2099400 13290 1668 13643 48307;48308 72842;72843 72842 745 2 VSSQFDPNK SQSDFKAFAGNSKSKVSSQFDPNKQTPSGK GNSKSKVSSQFDPNKQTPSGKKCIAAKKIK K V S N K Q 0 0 1 1 0 1 0 0 0 0 0 1 0 1 1 2 0 0 0 1 0 0 9 0 1020.4876 Q01780 Q01780 836 844 EXOSC10 Exosome component 10 yes yes 2 0.017622 57.59 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2014800 2014800 0 0 0 0 2014800 2014800 0 13291 1433 13644 48309 72844 72844 1 VSTALSCLLGLPLR EVDGSIMEGGGQILRVSTALSCLLGLPLRV RVSTALSCLLGLPLRVQKIRAGRSTPGLRP R V S L R V 1 1 0 0 1 0 0 1 0 0 5 0 0 0 1 2 1 0 0 1 0 0 14 0 1498.8541 A8K8K1;O00442;A6NIC1;B4DSL0 A8K8K1 22 35 RTCA RNA 3-terminal phosphate cyclase yes no 2 2.5852E-08 137.89 3 0.37048 0.50247 NaN 1 Median 0.37048 0.50247 NaN 1 0 Median NaN NaN NaN 0 0 Median 4792600 4065800 726790 4792600 4065800 726790 0 0 0 13292 641 13645 48310;48311;48312 72845;72846;72847 72846 3 VSTTLNVAQAYYAR ERAFSFRTVEAKQEKVSTTLNVAQAYYARD KVSTTLNVAQAYYARDALAKNLYSRLFSWL K V S A R D 3 1 1 0 0 1 0 0 0 0 1 0 0 0 0 1 2 0 2 2 0 0 14 0 1555.7995 E9PDF6;B0I1S9;O43795 E9PDF6 336 349 MYO1B Unconventional myosin-Ib yes no 2 1.0564E-27 190.57 2 1.1388 1.5477 16.046 2 Median 1.1388 1.5477 16.046 2 0 Median NaN NaN NaN 0 0 Median 16192000 8212100 7980100 16192000 8212100 7980100 0 0 0 13293 665 13646 48313;48314 72848;72849;72850;72851 72848 4 VSVAVEASADSSK HSKASNAAVKLAESKVSVAVEASADSSKTD SKVSVAVEASADSSKTDKKLQIQEKAAQEV K V S S K T 3 0 0 1 0 0 1 0 0 0 0 1 0 0 0 4 0 0 0 3 0 0 13 0 1248.6198 B2RA91;F8VXG7;Q99590;A0A087WTB7 B2RA91 1045 1057 SCAF11 Protein SCAF11 yes no 2 0.014503 38.875 1 0.68556 0.89799 NaN 1 Median NaN NaN NaN 0 0 Median 0.68556 0.89799 NaN 1 0 Median 2464800 1293300 1171500 0 0 0 2464800 1293300 1171500 13294 722 13647 48315 72852 72852 1 VSVEYTEK SDPIVFVVGAFAHGKVSVEYTEKMVSISNY GAFAHGKVSVEYTEKMVSISNYPLSAALTC K V S E K M 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 1 1 0 1 2 0 0 8 0 953.47058 A8K6D2;Q92979;A0A087WVM7 A8K6D2 208 215 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 2 0.010007 74.127 2 0.47488 0.72208 NaN 1 Median NaN NaN NaN 0 0 Median 0.47488 0.72208 NaN 1 0 Median 12158000 8390700 3767500 0 0 0 12158000 8390700 3767500 13295 623 13648 48316;48317 72853;72854 72853 2 VSVFFGGLSIK SKEYERFSKYMPSVKVSVFFGGLSIKKDEE PSVKVSVFFGGLSIKKDEEVLKKNCPHVVV K V S I K K 0 0 0 0 0 0 0 2 0 1 1 1 0 2 0 2 0 0 0 2 0 0 11 0 1152.6543 O00148;B4DX78;K7EQN7;A0A024R7H0;A0A0D9SEM9 O00148 144 154 DDX39A;DDX39 ATP-dependent RNA helicase DDX39A yes no 2 9.1119E-05 130.41 4 2 0.342 0.4157 89.927 5 Median 0.37949 0.41485 8.8523 4 0 Linear 2.1157 3.1915 NaN 1 0 Median 111150000 66562000 44587000 83130000 61376000 21754000 28019000 5185900 22833000 13296 1164 13649 48318;48319;48320;48321;48322;48323 72855;72856;72857;72858;72859;72860;72861;72862;72863;72864 72862 10 VSVHVIEGDHR DLGADYNLSQVCDGKVSVHVIEGDHRTLLE CDGKVSVHVIEGDHRTLLEGSGLESIISII K V S H R T 0 1 0 1 0 0 1 1 2 1 0 0 0 0 0 1 0 0 0 3 0 0 11 0 1246.6418 A0A0U1RQF0;P49327 A0A0U1RQF0 2470 2480 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3;4 0.027503 51.727 3 0.83911 1.1152 7.6899 3 Median 0.83911 1.1152 7.6899 3 0 Median NaN NaN NaN 0 0 Median 32401000 14223000 18178000 32401000 14223000 18178000 0 0 0 13297 486 13650 48324;48325;48326 72865;72866;72867 72866 3 VSYFEIYLDK NYIYSMDENLEFHIKVSYFEIYLDKIRDLL EFHIKVSYFEIYLDKIRDLLDVSKTNLSVH K V S D K I 0 0 0 1 0 0 1 0 0 1 1 1 0 1 0 1 0 0 2 1 0 0 10 0 1275.6387 V9HW29;D3DRX6;P33176;A8K048;M1VRN1;M1VKJ2;M1VE91;C1PHA2;M1V490;M1VPF9;M1V481;M1VPF7;M1VRN0;M1VKI9;M1VE89;Q6P164;Q2TA90;Q66K46;A0A0G2JMZ6;A1L179;B2RCP3;O60282;Q12840;B0I1S7;A5D6Y6;Q6PJC4;Q6PKD1;Q57YV5 V9HW29 132 141 HEL-S-61;KIF5B;KIF5B-RET(NM_020630)_K23;R12;KIF5B-RET(NM_020975)_K23;R12;KIF5B-RET(NM_020630)_K24;R11;KIF5B-ALK;KIF5B-RET(NM_020630)_K22;R12;KIF5B-RET(NM_020975)_K22;R12;KIF5B-ALK_K17;A20;KIF5B-RET(NM_020630)_K15;R12;KIF5B-RET(NM_020975)_K15;R12;KIF5B-RET(NM_020630)_K16;R12;KIF5B-RET(NM_020975)_K16;R12;KIF5C;KIF5A Kinesin-like protein;Kinesin-1 heavy chain;Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A yes no 2 0.043625 66.962 1 0.90193 1.1075 NaN 1 Median 0.90193 1.1075 NaN 1 0 Median NaN NaN NaN 0 0 Median 848580 422500 426080 848580 422500 426080 0 0 0 13298 978 13651 48327 72868 72868 1 VSYFPTVPGVYIVSTK KVDIQTEDLEDGTCKVSYFPTVPGVYIVST SYFPTVPGVYIVSTKFADEHVPGSPFTVKI K V S T K F 0 0 0 0 0 0 0 1 0 1 0 1 0 1 2 2 2 0 2 4 0 0 16 0 1755.9447 O75369;A0A024R321;Q68CT4;E7EN95;H7C5L4 O75369 2059 2074 FLNB;DKFZp686A1668 Filamin-B yes no 2 0.0085847 68.033 2 0.76857 0.96672 NaN 1 Median 0.76857 0.96672 NaN 1 0 Median NaN NaN NaN 0 0 Median 8315800 2900400 5415500 8315800 2900400 5415500 0 0 0 13299 1199 13652 48328;48329 72869;72870;72871 72870 3 VTADVINAAEK ELQDCEGLIVRSATKVTADVINAAEKLQVV SATKVTADVINAAEKLQVVGRAGTGVDNVD K V T E K L 3 0 1 1 0 0 1 0 0 1 0 1 0 0 0 0 1 0 0 2 0 0 11 0 1129.5979 O43175;V9HW79;Q5SZU1;B3KSC3 O43175 59 69 PHGDH;HEL-S-113 D-3-phosphoglycerate dehydrogenase yes no 2 4.0738E-12 128.81 5 1 0.74966 0.94728 112.12 4 Median 0.67777 0.86396 18.002 3 0 Median 5.2763 8.001 NaN 1 0 Median 97812000 51627000 46185000 84120000 49465000 34655000 13692000 2162400 11530000 13300 1182 13653 48330;48331;48332;48333;48334;48335 72872;72873;72874;72875;72876;72877;72878;72879 72876 8 VTAEVVLAHLGGGSTSR ______________________________ AEVVLAHLGGGSTSRATSFLLALEPELEAR K V T S R A 2 1 0 0 0 0 1 3 1 0 2 0 0 0 0 2 2 0 0 3 0 0 17 0 1652.8846 Q96HX3;Q6IBR0;Q53EP4;P04843;F8WF32 Q96HX3 10 26 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2;3 0.043316 75.483 2 0.42144 0.57317 NaN 1 Median 0.42144 0.57317 NaN 1 0 Median NaN NaN NaN 0 0 Median 9244100 5937500 3306600 9244100 5937500 3306600 0 0 0 13301 1233 13654 48336;48337 72880;72881 72880 2 VTAIEPIINHGGASASTQHLHPSLR LGISKVVKAVVLPGRVTAIEPIINHGGASA GGASASTQHLHPSLRWLFGVAAVVTDVGQI R V T L R W 3 1 1 0 0 1 1 2 3 3 2 0 0 0 2 3 2 0 0 1 0 0 25 0 2605.3725 Q8WYP5;Q96M44 Q8WYP5 126 150 AHCTF1 Protein ELYS yes no 4 0.00075426 52.095 1 0.73459 0.99571 NaN 1 Median 0.73459 0.99571 NaN 1 0 Median NaN NaN NaN 0 0 Median 9189900 6962300 2227600 9189900 6962300 2227600 0 0 0 13302 1670 13655 48338 72882 72882 1 VTAQGPGLEPSGNIANK PFEVYVDKSQGDASKVTAQGPGLEPSGNIA AQGPGLEPSGNIANKTTYFEIFTAGAGTGE K V T N K T 2 0 2 0 0 1 1 3 0 1 1 1 0 0 2 1 1 0 0 1 0 0 17 0 1651.8529 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98 P21333 384 400 FLNA Filamin-A yes no 2 4.4045E-34 187.62 4 0.95246 1.2177 2.1114 4 Median 0.95246 1.2177 2.1114 4 0 Median NaN NaN NaN 0 0 Median 45061000 23998000 21063000 45061000 23998000 21063000 0 0 0 13303 1287 13656 48339;48340;48341;48342 72883;72884;72885;72886;72887;72888;72889;72890;72891 72883 9 VTATVAGLTLLAVGVYSAK LFGEGFRAFVTDWDKVTATVAGLTLLAVGV VAGLTLLAVGVYSAKNATLVAGRFIEARLG K V T A K N 4 0 0 0 0 0 0 2 0 0 3 1 0 0 0 1 3 0 1 4 0 0 19 0 1833.0612 Q9NVI7;Q5T9A4;Q96T67;Q9H834 Q9NVI7 295 313 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3B no no 2 0.00013974 91.032 1 0.44726 0.57334 NaN 1 Median 0.44726 0.57334 NaN 1 0 Median NaN NaN NaN 0 0 Median 1769500 963500 806020 1769500 963500 806020 0 0 0 13304 1763;1573 13657 48343 72892 72892 1 VTAVIPCFPYAR LLIMINACKIASASRVTAVIPCFPYARQDK ASRVTAVIPCFPYARQDKKDKSRAPISAKL R V T A R Q 2 1 0 0 1 0 0 0 0 1 0 0 0 1 2 0 1 0 1 2 0 0 12 0 1392.7224 Q53FW2;P60891;A0A0B4J207;P21108;B1ALA7;B1ALA9;A6NMS2;D3YTJ7;B2R860;A0A140VK41;P11908 Q53FW2 85 96 PRPS1;PRPS1L1;PRPS2 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3;Ribose-phosphate pyrophosphokinase 2 no no 2 0.0008788 120.15 5 2 0.64693 0.90287 NaN 1 Median 0.64693 0.90287 NaN 1 0 Median NaN NaN NaN 0 0 Median 28918000 17888000 11029000 22388000 17888000 4499500 6529800 0 6529800 13305 1390;506 13658 48344;48345;48346;48347;48348;48349;48350 72893;72894;72895;72896;72897;72898;72899;72900 72900 8 VTAVPLDSYCNDR LLTELPSFLCVASPRVTAVPLDSYCNDRSA PRVTAVPLDSYCNDRSAEYERRVLKEGGSL R V T D R S 1 1 1 2 1 0 0 0 0 0 1 0 0 0 1 1 1 0 1 2 0 0 13 0 1508.6929 A0A024R9R7;Q9ULG1;A8K2V6;H0YMN5 A0A024R9R7 1017 1029 INOC1;INO80 DNA helicase INO80 yes no 2 0.0019193 92.611 2 0.46792 0.65482 NaN 1 Median 0.46792 0.65482 NaN 1 0 Median NaN NaN NaN 0 0 Median 2763900 2296500 467460 2763900 2296500 467460 0 0 0 13306 230 13659 48351;48352 72901;72902 72901 2 VTDFGDKVEDPTFLNQLQSGVNR TNVAKQCYERGEKPKVTDFGDKVEDPTFLN EDPTFLNQLQSGVNRWIREIQKVTKLDRDP K V T N R W 0 1 2 3 0 2 1 2 0 0 2 1 0 2 1 1 2 0 0 3 0 0 23 1 2578.2663 Q14204;B4DSR6 Q14204 229 251 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3 1.3635E-06 92.805 4 0.59899 0.78638 11.248 4 Median 0.59899 0.78638 11.248 4 0 Median NaN NaN NaN 0 0 Median 20616000 13718000 6898200 20616000 13718000 6898200 0 0 0 13307 1483 13660 48353;48354;48355;48356 72903;72904;72905;72906;72907;72908;72909 72906 7 VTDLLGGLFSK SDNAFIRASRALTDKVTDLLGGLFSKTEMS LTDKVTDLLGGLFSKTEMSEVLTEILR___ K V T S K T 0 0 0 1 0 0 0 2 0 0 3 1 0 1 0 1 1 0 0 1 0 0 11 0 1148.6441 M0QXU7;Q9UPE4;Q53G69;O43615 M0QXU7 251 261 TIMM44;hTIM44 Mitochondrial import inner membrane translocase subunit TIM44 yes no 2 3.271E-05 137.05 4 1 0.23188 0.29564 15.994 4 Median 0.23188 0.29564 15.994 4 0 Median NaN NaN NaN 0 0 Median 19743000 14086000 5657800 17834000 14086000 3748200 1909600 0 1909600 13308 1159 13661 48357;48358;48359;48360;48361 72910;72911;72912;72913;72914;72915;72916;72917;72918 72911 9 VTEEDIVELFCVCGALK PLEGTKMTVNNLHPRVTEEDIVELFCVCGA EEDIVELFCVCGALKRARLVHPGVAEVVFV R V T L K R 1 0 0 1 2 0 3 1 0 1 2 1 0 1 0 0 1 0 0 3 0 0 17 0 1980.9537 Q96DI9;F6VRR5;B4E0L0;Q9BY77;B4DMM2 Q96DI9 287 303 POLDIP3 Polymerase delta-interacting protein 3 yes no 2 0.00015447 54.7 2 0.78074 0.97232 16.538 2 Median 0.78074 0.97232 16.538 2 0 Median NaN NaN NaN 0 0 Median 5517800 2642600 2875200 5517800 2642600 2875200 0 0 0 13309 885 13662 48362;48363 72919;72920 72919 2 VTEEIAIPLRR QLIEKAKALHISRSKVTEEIAIPLRRSSRH SRSKVTEEIAIPLRRSSRHQTLPERKKLSE K V T R R S 1 2 0 0 0 0 2 0 0 2 1 0 0 0 1 0 1 0 0 1 0 0 11 1 1295.7561 Q96QE3;H0UIC2;A0A075B754 Q96QE3 720 730 ATAD5 ATPase family AAA domain-containing protein 5 yes no 3 0.045559 20.204 1 1.704 2.2582 NaN 1 Median 1.704 2.2582 NaN 1 0 Median NaN NaN NaN 0 0 Median 7222800 3215600 4007200 7222800 3215600 4007200 0 0 0 13310 1698 13663 48364 72921 72921 1 VTEEIVSSEHDEGLSFSGK TDHPGRTGRPTLPGKVTEEIVSSEHDEGLS IVSSEHDEGLSFSGKVQCYGRELNQPASAA K V T G K V 0 0 0 1 0 0 4 2 1 1 1 1 0 1 0 4 1 0 0 2 0 0 19 0 2048.9538 Q5VWN6 Q5VWN6 1499 1517 FAM208B Protein FAM208B yes yes 3 0.016462 43.794 1 0.58635 0.74063 NaN 1 Median 0.58635 0.74063 NaN 1 0 Median NaN NaN NaN 0 0 Median 3202500 1564600 1637800 3202500 1564600 1637800 0 0 0 13311 1579 13664 48365 72922 72922 1 VTELALTASDR REMKPVIFLDVFLPRVTELALTASDRQTKV FLPRVTELALTASDRQTKVAACELLHSMVM R V T D R Q 2 1 0 1 0 0 1 0 0 0 2 0 0 0 0 1 2 0 0 1 0 0 11 0 1174.6194 P78527;B4DL41 P78527 914 924 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 1.2507E-05 101.97 2 2 0.40406 0.57438 21.855 4 Median 0.34633 0.46123 17.302 2 0 Median 0.42634 0.64514 2.7042 2 0 Median 64366000 43565000 20801000 29905000 20527000 9377800 34461000 23038000 11423000 13312 1427 13665 48366;48367;48368;48369 72923;72924;72925;72926;72927 72927 5 VTELEDKFDLLVDANDVILER MQYHGCRSNIKDRSKVTELEDKFDLLVDAN KFDLLVDANDVILERVGILLDEASGVNKNQ K V T E R V 1 1 1 4 0 0 3 0 0 1 4 1 0 1 0 0 1 0 0 3 0 0 21 1 2445.2639 Q01780;B4DKG8;B4DFE4;Q59G73;K7EJ37 Q01780 103 123 EXOSC10 Exosome component 10 yes no 3 1.2545E-08 104.86 3 0.73931 0.99496 1.8402 2 Median 0.73931 0.99496 1.8402 2 0 Median NaN NaN NaN 0 0 Median 10144000 5545400 4598500 10144000 5545400 4598500 0 0 0 13313 1433 13666 48370;48371;48372 72928;72929;72930;72931 72928 4 VTESIEDIK PVPMLIPSSMDSEDKVTESIEDIKEKLPTH MDSEDKVTESIEDIKEKLPTHPFEADLLEM K V T I K E 0 0 0 1 0 0 2 0 0 2 0 1 0 0 0 1 1 0 0 1 0 0 9 0 1032.5339 Q5VZL5;H7C1I7 Q5VZL5 1027 1035 ZMYM4 Zinc finger MYM-type protein 4 yes no 2 0.021931 51.113 1 1.2581 1.7357 NaN 1 Median NaN NaN NaN 0 0 Median 1.2581 1.7357 NaN 1 0 Median 5350300 2371000 2979400 0 0 0 5350300 2371000 2979400 13314 1580 13667 48373 72932 72932 1 VTFALPDDAETEDTGVLNVK QENEDNKQHKESLKRVTFALPDDAETEDTG PDDAETEDTGVLNVKKNSDEVKSSFEKRQE R V T V K K 2 0 1 3 0 0 2 1 0 0 2 1 0 1 1 0 3 0 0 3 0 0 20 0 2133.0477 B3KPV5;O00566;U3KQ48 B3KPV5 331 350 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 2 6.4026E-17 139.3 4 1 0.67251 0.96232 17.356 4 Median 0.71439 0.95166 20.424 3 0 Median 0.6331 0.97309 NaN 1 0 Median 49442000 34030000 15412000 21768000 15515000 6253300 27674000 18515000 9158400 13315 767 13668 48374;48375;48376;48377;48378 72933;72934;72935;72936;72937;72938;72939;72940 72936 8 VTFEADENENITVVK ______________________________ VTFEADENENITVVKGIRLSENVIDRMKES R V T V K G 1 0 2 1 0 0 3 0 0 1 0 1 0 1 0 0 2 0 0 3 0 0 15 0 1706.8363 A4D1N4;C9JRZ6;Q9NX63;B7Z1X9;F8WAR4;F8WD73 A4D1N4 10 24 CHCHD3 MICOS complex subunit MIC19 yes no 2 5.5796E-10 147.58 4 1 0.47077 0.60041 63.32 4 Median 0.4693 0.59888 6.081 3 0 Median 1.4873 2.0488 NaN 1 0 Median 21427000 12872000 8554500 16424000 10842000 5582100 5002300 2029900 2972400 13316 549 13669 48379;48380;48381;48382;48383 72941;72942;72943;72944;72945;72946;72947;72948;72949 72942 9 VTFQFSYGTK VLGLKLPNLLGRAEKVTFQFSYGTKETSYG GRAEKVTFQFSYGTKETSYGLSFFKPRPGN K V T T K E 0 0 0 0 0 1 0 1 0 0 0 1 0 2 0 1 2 0 1 1 0 0 10 0 1176.5815 Q9Y512 Q9Y512 159 168 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 2 0.0066172 78.098 2 0.43892 0.56767 NaN 1 Median 0.43892 0.56767 NaN 1 0 Median NaN NaN NaN 0 0 Median 14297000 4672500 9624100 14297000 4672500 9624100 0 0 0 13317 1827 13670 48384;48385 72950;72951 72951 2 VTFSGLRDTVTPGELLK AKLSATLEQAAATARVTFSGLRDTVTPGEL FSGLRDTVTPGELLKAEIIDQDLYERLEHG R V T L K A 0 1 0 1 0 0 1 2 0 0 3 1 0 1 1 1 3 0 0 2 0 0 17 1 1832.0044 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 558 574 EPPK1 Epiplakin no no 3 0.0074639 20.368 1 0.56653 0.72965 NaN 1 Median 0.56653 0.72965 NaN 1 0 Median NaN NaN NaN 0 0 Median 4302400 2868100 1434300 4302400 2868100 1434300 0 0 0 13318 373;1386 13671 48386 72952 72952 1 VTGCLIVCIER LRVEKTGHSGTLDPKVTGCLIVCIERATRL LDPKVTGCLIVCIERATRLVKSQQSAGKEY K V T E R A 0 1 0 0 2 0 1 1 0 2 1 0 0 0 0 0 1 0 0 2 0 0 11 0 1318.6737 O60832;C9IYT0;U5UA77;H7C0M1;U5U7S7;H7C2Q9 O60832 128 138 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 0.00011628 123.11 4 1 0.62553 0.8452 3.7185 4 Median 0.62553 0.8452 3.7185 4 0 Median NaN NaN NaN 0 0 Median 125070000 78177000 46893000 111290000 64395000 46893000 13782000 13782000 0 13319 1193 13672 48387;48388;48389;48390;48391 72953;72954;72955;72956;72957;72958;72959;72960;72961;72962 72958 10 VTGEADVEFATHEEAVAAMSK LNPVRVHIEIGPDGRVTGEADVEFATHEEA VEFATHEEAVAAMSKDRANMQHRYIELFLN R V T S K D 5 0 0 1 0 0 4 1 1 0 0 1 1 1 0 1 2 0 0 3 0 0 21 0 2191.0103 A0A024R7T3;P52597;B4DKS8 A0A024R7T3 327 347 HNRPF;HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 3 8.3051E-06 53.747 1 3.2303 4.8935 NaN 1 Median NaN NaN NaN 0 0 Median 3.2303 4.8935 NaN 1 0 Median 18773000 4044700 14729000 0 0 0 18773000 4044700 14729000 13320 184 13673 48392 72963 72963 84 1 VTGEGRMKESITRRR KFADKHVPGSPFTVKVTGEGRMKESITRRR VTGEGRMKESITRRRQAPSIATIGSTCDLN K V T R R Q 0 4 0 0 0 0 2 2 0 1 0 1 1 0 0 1 2 0 0 1 0 0 15 4 1774.9584 Q14315;Q59H94 Q14315 2128 2142 FLNC Filamin-C yes no 3 0.029322 18.138 1 1.381 1.2874 NaN 1 Median 1.381 1.2874 NaN 1 0 Median NaN NaN NaN 0 0 Median 4763000 2018900 2744100 4763000 2018900 2744100 0 0 0 13321 1486 13674 48393 72964 72964 1 VTGELAFDTSSADVR WEMMPPTILIDLLKKVTGELAFDTSSADVR VTGELAFDTSSADVRCSVFKCLPMILDNKL K V T V R C 2 1 0 2 0 0 1 1 0 0 1 0 0 1 0 2 2 0 0 2 0 0 15 0 1566.7526 Q86XI2;B3KRQ2;Q9NXD3;H0Y6U5 Q86XI2 423 437 NCAPG2 Condensin-2 complex subunit G2 yes no 2 1.5659E-28 153.34 4 2 0.73673 1.0014 4.9938 6 Median 0.74837 1.0062 4.9032 4 0 Median 0.62861 0.96944 4.3987 2 0 Median 96294000 57814000 38480000 53855000 32431000 21424000 42439000 25384000 17056000 13322 1621 13675 48394;48395;48396;48397;48398;48399 72965;72966;72967;72968;72969;72970;72971;72972;72973;72974;72975;72976;72977;72978 72971 14 VTHAVVTVPAYFNDAQR LTKMKETAEAYLGKKVTHAVVTVPAYFNDA HAVVTVPAYFNDAQRQATKDAGTIAGLNVM K V T Q R Q 3 1 1 1 0 1 0 0 1 0 0 0 0 1 1 0 2 0 1 4 0 0 17 0 1886.9639 V9HWB4;P11021;B4DEF7 V9HWB4 165 181 HEL-S-89n;HSPA5 78 kDa glucose-regulated protein yes no 3 0.0084855 27.149 1 0.47909 0.62742 NaN 1 Median 0.47909 0.62742 NaN 1 0 Median NaN NaN NaN 0 0 Median 7252300 5308100 1944300 7252300 5308100 1944300 0 0 0 13323 1252 13676 48400 72979 72979 1 VTIAQGGVLPNIQAVLLPK LAIRNDEELNKLLGKVTIAQGGVLPNIQAV QGGVLPNIQAVLLPKKTESHHKAK______ K V T P K K 2 0 1 0 0 2 0 2 0 2 3 1 0 0 2 0 1 0 0 3 0 0 19 0 1930.1615 Q08AJ9;A0A024R017;Q93077;Q7L7L0;P04908;A3KPC7;A0A024RAS2;B2R5B3;A4FTV9;A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8;H0YFX9;B4E0B3 A3KPC7 101 119 HIST1H2AB;HIST1H2AC;HIST3H2A;HIST1H2AH;H2AFJ;HIST1H2AK;HIST1H2AJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG Histone H2A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1 no no 2;3 6.2249E-126 273.74 76 31 0.68301 0.96965 17.605 56 Median 0.73984 0.93836 22.665 32 0 Median 0.64818 0.98704 4.6892 24 0 Median 118730000000 78271000000 40458000000 103630000000 76631000000 27000000000 15098000000 1639700000 13458000000 13324 248;26 13677 48401;48402;48403;48404;48405;48406;48407;48408;48409;48410;48411;48412;48413;48414;48415;48416;48417;48418;48419;48420;48421;48422;48423;48424;48425;48426;48427;48428;48429;48430;48431;48432;48433;48434;48435;48436;48437;48438;48439;48440;48441;48442;48443;48444;48445;48446;48447;48448;48449;48450;48451;48452;48453;48454;48455;48456;48457;48458;48459;48460;48461;48462;48463;48464;48465;48466;48467;48468;48469;48470;48471;48472;48473;48474;48475;48476;48477;48478;48479;48480;48481;48482;48483;48484;48485;48486;48487;48488;48489;48490;48491;48492;48493;48494;48495;48496;48497;48498;48499;48500;48501;48502;48503;48504;48505;48506;48507 72980;72981;72982;72983;72984;72985;72986;72987;72988;72989;72990;72991;72992;72993;72994;72995;72996;72997;72998;72999;73000;73001;73002;73003;73004;73005;73006;73007;73008;73009;73010;73011;73012;73013;73014;73015;73016;73017;73018;73019;73020;73021;73022;73023;73024;73025;73026;73027;73028;73029;73030;73031;73032;73033;73034;73035;73036;73037;73038;73039;73040;73041;73042;73043;73044;73045;73046;73047;73048;73049;73050;73051;73052;73053;73054;73055;73056;73057;73058;73059;73060;73061;73062;73063;73064;73065;73066;73067;73068;73069;73070;73071;73072;73073;73074;73075;73076;73077;73078;73079;73080;73081;73082;73083;73084;73085;73086;73087;73088;73089;73090;73091;73092;73093;73094;73095;73096;73097;73098;73099;73100;73101;73102;73103;73104;73105;73106;73107;73108;73109;73110;73111;73112;73113;73114;73115;73116;73117;73118;73119;73120;73121;73122;73123;73124;73125;73126;73127;73128;73129;73130;73131;73132;73133;73134;73135;73136;73137;73138;73139;73140;73141;73142;73143;73144;73145;73146;73147;73148;73149;73150;73151;73152;73153;73154;73155;73156;73157;73158;73159;73160;73161;73162;73163;73164;73165;73166;73167;73168 73053 186 VTIAQGGVLPNIQAVLLPKK LAIRNDEELNKLLGKVTIAQGGVLPNIQAV GGVLPNIQAVLLPKKTESHHKAK_______ K V T K K T 2 0 1 0 0 2 0 2 0 2 3 2 0 0 2 0 1 0 0 3 0 0 20 1 2058.2565 Q08AJ9;A0A024R017;Q93077;Q7L7L0;P04908;A3KPC7;A0A024RAS2;B2R5B3;A4FTV9;A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q9BTM1;Q16777;Q6FI13;P20671;P0C0S8;H0YFX9;B4E0B3 A3KPC7 101 120 HIST1H2AB;HIST1H2AC;HIST3H2A;HIST1H2AH;H2AFJ;HIST1H2AK;HIST1H2AJ;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG Histone H2A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1 no no 3 8.0509E-07 119.23 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13325 248;26 13678 48508;48509 73169;73170 73169 2 VTIDPENNLISIWNNGK AADNKQRDPKMSCIRVTIDPENNLISIWNN IDPENNLISIWNNGKGIPVVEHKVEKMYVP R V T G K G 0 0 4 1 0 0 1 1 0 3 1 1 0 0 1 1 1 1 0 1 0 0 17 0 1925.9847 P11388;J3KTB7 P11388 107 123 TOP2A DNA topoisomerase 2-alpha yes no 2 1.4561E-06 111.31 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 160750000 160750000 0 0 0 0 160750000 160750000 0 13326 1256 13679 48510 73171;73172 73171 2 VTIFTVPENCR KIEDDNDNAPYFEHRVTIFTVPENCRSGTS FEHRVTIFTVPENCRSGTSVGKVTATDLDE R V T C R S 0 1 1 0 1 0 1 0 0 1 0 0 0 1 1 0 2 0 0 2 0 0 11 0 1334.6653 Q9HB00;Q08554 Q9HB00 246 256 DSC1 Desmocollin-1 yes no 2 0.03167 45.368 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4292700 4292700 0 0 0 0 4292700 4292700 0 13327 1450 13680 48511 73173 73173 1 VTILGHVQR KIKELVVTQLGYDTRVTILGHVQRGGTPSA LGYDTRVTILGHVQRGGTPSAFDRILASRM R V T Q R G 0 1 0 0 0 1 0 1 1 1 1 0 0 0 0 0 1 0 0 2 0 0 9 0 1021.6033 Q01813;B1APP6;V9GY25 Q01813 302 310 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 3 0.013142 39.547 1 0.58202 0.78025 NaN 1 Median 0.58202 0.78025 NaN 1 0 Median NaN NaN NaN 0 0 Median 28240000 15894000 12346000 28240000 15894000 12346000 0 0 0 13328 1434 13681 48512 73174 73174 1 VTIMPKDIQLAR GLFEDTNLCAIHAKRVTIMPKDIQLARRIR AKRVTIMPKDIQLARRIRGERA________ R V T A R R 1 1 0 1 0 1 0 0 0 2 1 1 1 0 1 0 1 0 0 1 0 0 12 1 1383.7908 B2R4P9;P84243;B4E380;K7EK07;Q16695;Q6NXT2;A8K4Y7;P68431;Q71DI3 B2R4P9 118 129 H3F3A;H3F3B;HIST3H3;H3F3C;HIST1H3A;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.3C;Histone H3.1;Histone H3.2 no no 3 0.0019862 51.211 2 0.51368 0.88401 7.744 2 Median NaN NaN NaN 0 0 Median 0.51368 0.88401 7.744 2 0 Median 91249000 55181000 36067000 0 0 0 91249000 55181000 36067000 13329 685;1424;1605 13682 48513;48514 73175;73176 73176 236 2 VTINDLNENSVTLIQENCHLNK IMGLQWAKHLGNAVKVTINDLNENSVTLIQ ENSVTLIQENCHLNKLKVVVDSKEKEKSDD K V T N K L 0 0 5 1 1 1 2 0 1 2 3 1 0 0 0 1 2 0 0 2 0 0 22 0 2567.265 B4DXX1;B2R713;Q7Z2T5 B4DXX1 147 168 TRMT1L TRMT1-like protein yes no 3 0.00028222 80.733 2 0.39316 0.49835 NaN 1 Median 0.39316 0.49835 NaN 1 0 Median NaN NaN NaN 0 0 Median 9358100 6251700 3106400 9358100 6251700 3106400 0 0 0 13330 702 13683 48515;48516 73177;73178 73177 2 VTITQGGVLPNIQAVLLPK LAIRNDEELNKLLGKVTITQGGVLPNIQAV QGGVLPNIQAVLLPKKTESHHKAKGK____ K V T P K K 1 0 1 0 0 2 0 2 0 2 3 1 0 0 2 0 2 0 0 3 0 0 19 0 1960.1721 B2R5B6 B2R5B6 101 119 Histone H2A yes yes 2 2.4293E-15 134.75 5 1 0.52911 0.67436 7.2101 3 Median 0.574 0.71389 8.057 2 0 Median 0.42282 0.66129 NaN 1 0 Median 107490000 55429000 52063000 72068000 31047000 41021000 35424000 24382000 11042000 13331 689 13684 48517;48518;48519;48520;48521;48522 73179;73180;73181;73182;73183;73184;73185 73181 6 VTIYENLDVTNEFHTANLSTK HKLEKDNLLPNQKDKVTIYENLDVTNEFHT LDVTNEFHTANLSTKDNGNLCDYGTHNILD K V T T K D 1 0 3 1 0 0 2 0 1 1 2 1 0 1 0 1 4 0 1 2 0 0 21 0 2408.186 Q562F6;B7Z7S9 Q562F6 556 576 SGOL2 Shugoshin-like 2 yes no 3 6.8574E-27 151.58 4 1 0.8689 1.1048 12.482 5 Median 0.88346 1.1345 14.066 4 0 Median 0.66783 1.006 NaN 1 0 Median 68390000 32440000 35950000 51301000 25335000 25966000 17089000 7105000 9984000 13332 1546 13685 48523;48524;48525;48526;48527 73186;73187;73188;73189;73190;73191;73192 73186 5 VTKPVQIQK VFDDEDEEEENIESKVTKPVQIQKRAVKRP ENIESKVTKPVQIQKRAVKRPAPAKSSDHS K V T Q K R 0 0 0 0 0 2 0 0 0 1 0 2 0 0 1 0 1 0 0 2 0 0 9 1 1039.639 A0A024R753;Q9NW13;B4DJ90;C9JAA9;H7C5G8 A0A024R753 261 269 RBM28 RNA-binding protein 28 yes no 2;3 0.027417 67.993 1 1 0.8533 1.1827 1.3247 2 Median 0.97407 1.1938 NaN 1 0 Median 0.74751 1.1717 NaN 1 0 Median 44669000 21942000 22727000 34623000 16146000 18477000 10046000 5796300 4250000 13333 169 13686 48528;48529 73193;73194 73194 2 VTLATLK IVEAEAMNYEGSPIKVTLATLKMSVQPTVS NYEGSPIKVTLATLKMSVQPTVSLGGFEIT K V T L K M 1 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 2 0 0 1 0 0 7 0 744.47454 A0A0S2Z4G7;A0A0S2Z491;P06748;A0A140VJQ2;A4ZU86;Q9BTI9;E5RI98;V9HVU7;A0A024RAP1 A0A0S2Z4G7 74 80 NPM1;CLEC2D Nucleophosmin yes no 2 0.013808 100.74 5 2 0.65683 0.87172 28.801 6 Median 0.60089 0.78921 9.623 4 0 Median 0.88568 1.3972 1.3025 2 0 Median 2095300000 1214400000 880890000 1630400000 974460000 655980000 464870000 239970000 224910000 13334 462 13687 48530;48531;48532;48533;48534;48535;48536 73195;73196;73197;73198;73199;73200;73201;73202;73203 73200 9 VTLFSDSKPLGSEDIDNQGLMMPK ISTHSTIDAKMASSRVTLFSDSKPLGSEDI LGSEDIDNQGLMMPKEEKQMDLNTGRMRRK R V T P K E 0 0 1 3 0 1 1 2 0 1 3 2 2 1 2 3 1 0 0 1 0 0 24 1 2621.2717 Q14692 Q14692 392 415 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 3.9537E-07 55.228 1 0.71037 1.135 NaN 1 Median NaN NaN NaN 0 0 Median 0.71037 1.135 NaN 1 0 Median 39706000 23082000 16625000 0 0 0 39706000 23082000 16625000 13335 1495 13688 48537 73204 73204 676;677 1 VTLGTQPTVLR FGLNIETGLLSDRKKVTLGTQPTVLRTFRS DRKKVTLGTQPTVLRTFRSLSTTNVFACSD K V T L R T 0 1 0 0 0 1 0 1 0 0 2 0 0 0 1 0 3 0 0 2 0 0 11 0 1183.6925 Q16531;B4DSA8;F5GY55;B7Z2A1;B4DZP5 Q16531 629 639 DDB1 DNA damage-binding protein 1 yes no 2 1.6455E-28 182.98 4 2 0.83403 1.1798 5.3443 6 Median 0.84632 1.1661 1.9362 4 0 Median 0.78759 1.2829 1.8936 2 0 Median 403230000 225270000 177960000 256530000 144510000 112030000 146700000 80763000 65932000 13336 1520 13689 48538;48539;48540;48541;48542;48543 73205;73206;73207;73208;73209;73210;73211;73212;73213;73214;73215;73216;73217 73209 13 VTLILELLQHK DLESVQEVGGSYWQRVTLILELLQHKKKLR YWQRVTLILELLQHKKKLRSPQILVPTLFN R V T H K K 0 0 0 0 0 1 1 0 1 1 4 1 0 0 0 0 1 0 0 1 0 0 11 0 1305.802 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8 B2RWN5 1207 1217 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 0.0013858 89.827 3 0.95727 1.2195 9.6488 3 Plateau 0.95727 1.2195 9.6488 3 0 Plateau NaN NaN NaN 0 0 Median 35464000 18608000 16856000 35464000 18608000 16856000 0 0 0 13337 748 13690 48544;48545;48546 73218;73219;73220;73221;73222 73221 5 VTLLEGDHVR IPKELPFGDKDTKSKVTLLEGDHVRFNIST DTKSKVTLLEGDHVRFNISTDRRDKLERAT K V T V R F 0 1 0 1 0 0 1 1 1 0 2 0 0 0 0 0 1 0 0 2 0 0 10 0 1137.6142 Q9GZV0;A0A024R0K2;A0A024R0E2;O75534;Q96L66;E9PLT0 Q9GZV0 277 286 CSDE1;UNR Cold shock domain-containing protein E1 yes no 2;3 0.0092257 87.476 4 0.41223 0.55133 15.62 3 Plateau 0.41223 0.55133 15.62 3 0 Plateau NaN NaN NaN 0 0 Median 53572000 38459000 15114000 53572000 38459000 15114000 0 0 0 13338 31 13691 48547;48548;48549;48550 73223;73224;73225;73226 73226 4 VTLTPLK GSAKELQAPRKRTVKVTLTPLKMENESQSK APRKRTVKVTLTPLKMENESQSKNALKESS K V T L K M 0 0 0 0 0 0 0 0 0 0 2 1 0 0 1 0 2 0 0 1 0 0 7 0 770.49019 Q03164 Q03164 2522 2528 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 0.021654 74.415 1 1.0813 1.3674 NaN 1 Median 1.0813 1.3674 NaN 1 0 Median NaN NaN NaN 0 0 Median 10736000 5513500 5222800 10736000 5513500 5222800 0 0 0 13339 1438 13692 48551 73227 73227 1 VTLVQTLEIQR IGEKLHRTELATQEKVTLVQTLEIQRQQSD TQEKVTLVQTLEIQRQQSDHDAERLREAIA K V T Q R Q 0 1 0 0 0 2 1 0 0 1 2 0 0 0 0 0 2 0 0 2 0 0 11 0 1298.7558 Q15149 Q15149 2565 2575 PLEC Plectin yes yes 2 3.682E-09 159.34 4 0.94096 1.2661 7.1438 4 Median 0.94096 1.2661 7.1438 4 0 Median NaN NaN NaN 0 0 Median 124470000 63235000 61235000 124470000 63235000 61235000 0 0 0 13340 1507 13693 48552;48553;48554;48555 73228;73229;73230;73231;73232;73233;73234;73235;73236 73230 9 VTLVVGASQDIIPQLK AITQRMVDFAGVKDKVTLVVGASQDIIPQL TLVVGASQDIIPQLKKKYDVDTLDMVFLDH K V T L K K 1 0 0 1 0 2 0 1 0 2 2 1 0 0 1 1 1 0 0 3 0 0 16 0 1679.9822 A0A140VJG8;P21964;B8XPJ7;E7EMS6;B8XPJ8;E7EUU8;H7BZ45 A0A140VJG8 162 177 COMT Catechol O-methyltransferase yes no 2 6.6147E-54 179.35 4 0.51155 0.62986 6.8072 4 Linear 0.51155 0.62986 6.8072 4 0 Linear NaN NaN NaN 0 0 Median 87451000 55909000 31542000 87451000 55909000 31542000 0 0 0 13341 495 13694 48556;48557;48558;48559 73237;73238;73239;73240;73241;73242;73243 73241 7 VTLYECHSQGEIR KEGDPLVFATVGSNRVTLYECHSQGEIRLL NRVTLYECHSQGEIRLLQSYVDADADENFY R V T I R L 0 1 0 0 1 1 2 1 1 1 1 0 0 0 0 1 1 0 1 1 0 0 13 0 1590.746 O75530;B4DVW7;E9PJK2;B4DFK0 O75530 121 133 EED Polycomb protein EED yes no 2;3 8.2723E-06 135.1 4 0.80069 1.0786 27.723 4 Median 0.80069 1.0786 27.723 4 0 Median NaN NaN NaN 0 0 Median 51893000 28121000 23772000 51893000 28121000 23772000 0 0 0 13342 1203 13695 48560;48561;48562;48563 73244;73245;73246;73247 73245 4 VTMINAIPVASLDPIK KNFDMVIVYKDYSKKVTMINAIPVASLDPI TMINAIPVASLDPIKEWLNSCDLKYTEGVQ K V T I K E 2 0 1 1 0 0 0 0 0 3 1 1 1 0 2 1 1 0 0 2 0 0 16 0 1680.9484 Q9Y5B9 Q9Y5B9 868 883 SUPT16H FACT complex subunit SPT16 yes yes 2 1.9503E-08 120.59 3 2 0.71459 0.97142 12.778 5 Median 0.79511 1.0242 16.476 3 0 Median 0.60999 0.95621 2.2318 2 0 Median 84757000 50985000 33773000 10399000 5275400 5123300 74359000 45709000 28649000 13343 1829 13696;13697 48564;48565;48566;48567;48568 73248;73249;73250;73251;73252;73253;73254;73255 73249 855 7 VTMQNLNDR GGFGGDGGLLSGNEKVTMQNLNDRLASYLD LSGNEKVTMQNLNDRLASYLDKVRALEESN K V T D R L 0 1 2 1 0 1 0 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 9 0 1089.5237 CON__P02533;P02533;CON__A2A4G1;Q6ZPD6;CON__Q7Z3Y9;Q7Z3Y9;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;CON__P13645;P13645;CON__P02535-1;CON__Q148H6;CON__Q7Z3Y7;Q7Z3Y7;CON__Q7Z3Z0;CON__Q7Z3Y8;Q7Z3Z0;Q7Z3Y8 CON__P13645 148 156 KRT14;KRT26;KRT16;KRT10;KRT28;KRT25;KRT27 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 26;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 27 no no 2 0.00035431 90.709 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23179000 23179000 0 12498000 12498000 0 10681000 10681000 0 + 13344 960;949;958 13698 48569;48570;48571;48572;48573 73256;73257;73258;73259;73260 73258 5 VTNEIFR PPADLRPDEEVFYCKVTNEIFRHYDDFFER DEEVFYCKVTNEIFRHYDDFFERTILCNSL K V T F R H 0 1 1 0 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 7 0 877.46577 D3DS96;Q9NRL2;Q05CW0;Q32ND1 D3DS96 29 35 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 0.00015289 105.39 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13345 979 13699 48574 73261 73261 1 VTNRDIICQIAYAR DKNKYNTPKYRMIVRVTNRDIICQIAYARI RVTNRDIICQIAYARIEGDMIVCAAYAHEL R V T A R I 2 2 1 1 1 1 0 0 0 3 0 0 0 0 0 0 1 0 1 1 0 0 14 1 1691.8777 A2RUM7;P46777;B3KTM6;Q59GX9;Q9BUV4;Q5T7N0 A2RUM7 55 68 RPL5 60S ribosomal protein L5 yes no 3 1.1586E-14 142.38 3 2 0.66791 0.9244 21.138 5 Median 0.75043 1.0392 11.223 3 0 Median 0.49667 0.72575 4.07 2 0 Median 289870000 174380000 115490000 266570000 159720000 106850000 23294000 14659000 8635100 13346 540 13700 48575;48576;48577;48578;48579 73262;73263;73264;73265;73266;73267;73268;73269;73270;73271;73272 73267 11 VTPDLKPTEASSSAFR ASAPSSTPTGTTVVKVTPDLKPTEASSSAF TPDLKPTEASSSAFRLMPALGVSVADQKGK K V T F R L 2 1 0 1 0 0 1 0 0 0 1 1 0 1 2 3 2 0 0 1 0 0 16 1 1704.8683 A0A024R3K9;A0A024R3N2;Q6P4R8 A0A024R3K9 1044 1059 NFRKB Nuclear factor related to kappa-B-binding protein yes no 3 0.035938 20.048 2 0.79038 1.2036 2.1054 2 Median NaN NaN NaN 0 0 Median 0.79038 1.2036 2.1054 2 0 Median 12811000 6708800 6101900 0 0 0 12811000 6708800 6101900 13347 101 13701 48580;48581 73273;73274;73275 73275 3 VTPEPGAGPTQGLLR RGLLASDLNTDGDMRVTPEPGAGPTQGLLR VTPEPGAGPTQGLLRATEATAMAMGRGEGL R V T L R A 1 1 0 0 0 1 1 3 0 0 2 0 0 0 3 0 2 0 0 1 0 0 15 0 1491.8045 A0A024R7K7;A0A024R7M6;Q86YP4;C9JHD7;C9JJK9;V9GYX5;C9JVY3;V9GY85;H7C3H1;C9JMI3;C9JGN4 A0A024R7K7 48 62 GATAD2A Transcriptional repressor p66-alpha yes no 2 0.0011519 58.781 2 1 0.9303 1.3068 23.212 3 Plateau 0.7671 1.0533 4.7473 2 0 Median 1.0828 1.5679 NaN 1 0 Median 32088000 16320000 15768000 18486000 10240000 8245900 13602000 6079900 7521700 13348 179 13702 48582;48583;48584 73276;73277;73278;73279;73280 73278 5 VTPNEGLTVSFPFGK HKLEEGEVAMGRVVKVTPNEGLTVSFPFGK VTPNEGLTVSFPFGKIGTVSIFHMSDSYSE K V T G K I 0 0 1 0 0 0 1 2 0 0 1 1 0 2 2 1 2 0 0 2 0 0 15 0 1591.8246 Q14690 Q14690 1240 1254 PDCD11 Protein RRP5 homolog yes yes 2 3.0894E-07 111.52 5 4 1.0553 1.3355 22.55 5 Median 1.0553 1.3355 22.55 5 0 Median NaN NaN NaN 0 0 Median 212650000 105320000 107330000 167510000 78756000 88754000 45140000 26566000 18574000 13349 1494 13703 48585;48586;48587;48588;48589;48590;48591;48592;48593 73281;73282;73283;73284;73285;73286;73287;73288;73289;73290;73291;73292;73293;73294 73287 14 VTPTRTEIIILATR TRELAEDGYSGVEVRVTPTRTEIIILATRT RVTPTRTEIIILATRTQNVLGEKGRRIREL R V T T R T 1 2 0 0 0 0 1 0 0 3 1 0 0 0 1 0 4 0 0 1 0 0 14 1 1582.9406 P23396;Q53G83;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;H0YEU2;H0YF32;E9PQ96;E9PJH4;E9PK82 P23396 41 54 RPS3 40S ribosomal protein S3 yes no 3 0.0031089 39.005 2 2 1.1342 1.5561 53.321 4 Median 0.71967 0.96465 4.8353 2 0 Median 1.7538 2.4261 0.014989 2 0 Median 63455000 32183000 31272000 49076000 26570000 22505000 14379000 5612500 8766700 13350 1293 13704 48594;48595;48596;48597 73295;73296;73297;73298;73299 73296 5 VTPVEVMPVFPDFK EDAQKSISQHYSKPRVTPVEVMPVFPDFKM RVTPVEVMPVFPDFKMWINPCAQVIFDSDP R V T F K M 0 0 0 1 0 0 1 0 0 0 0 1 1 2 3 0 1 0 0 4 0 0 14 0 1603.832 A0A024R0H6;Q8N7H5;B4DGJ5 A0A024R0H6 199 212 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 0.0019883 57.836 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6900500 0 6900500 0 0 0 6900500 0 6900500 13351 36 13705 48598 73300 73300 5 1 VTQALNVLTTTFGR MDHVEESLCSAATPKVTQALNVLTTTFGRC KVTQALNVLTTTFGRCQSPWTEALWVRLSP K V T G R C 1 1 1 0 0 1 0 1 0 0 2 0 0 1 0 0 4 0 0 2 0 0 14 0 1519.8358 Q6PJG6 Q6PJG6 214 227 BRAT1 BRCA1-associated ATM activator 1 yes yes 2 0.00011526 107.39 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3140500 3140500 0 3140500 3140500 0 0 0 0 13352 1596 13706 48599;48600 73301;73302 73302 2 VTQHESDNENEIQIQNK VSSIHTDDSLEVERRVTQHESDNENEIQIQ QHESDNENEIQIQNKLKKDFPKQFDQVSVF R V T N K L 0 0 3 1 0 3 3 0 1 2 0 1 0 0 0 1 1 0 0 1 0 0 17 0 2024.9399 Q5VZL5 Q5VZL5 117 133 ZMYM4 Zinc finger MYM-type protein 4 yes yes 3 0.026418 20.048 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2139900 2139900 0 2139900 2139900 0 0 0 0 13353 1580 13707 48601 73303 73303 1 VTQLLPQNVHSHNSISK KSQDVQRESEPLREKVTQLLPQNVHSHNSI QLLPQNVHSHNSISKPQKGGPLNKEYTNWE K V T S K P 0 0 2 0 0 2 0 0 2 1 2 1 0 0 1 3 1 0 0 2 0 0 17 0 1901.0119 A0A024R0F1;Q9UNY4 A0A024R0F1 258 274 TTF2 Transcription termination factor 2 yes no 3 0.0065287 75.018 3 1.1543 1.4651 NaN 1 Median 1.1543 1.4651 NaN 1 0 Median NaN NaN NaN 0 0 Median 9326000 4149300 5176700 9326000 4149300 5176700 0 0 0 13354 33 13708 48602;48603;48604 73304;73305;73306;73307 73304 4 VTQPTGEEPALSNLGLPFSSFDHSK EKRIREFYQSRGLDRVTQPTGEEPALSNLG LSNLGLPFSSFDHSKAHYYRYDEQLNLCLE R V T S K A 1 0 1 1 0 1 2 2 1 0 3 1 0 2 3 4 2 0 0 1 0 0 25 0 2657.2973 Q9BSM1 Q9BSM1 135 159 PCGF1 Polycomb group RING finger protein 1 yes yes 3 3.6274E-05 59.674 4 0.5212 0.65516 4.6294 4 Median 0.5212 0.65516 4.6294 4 0 Median NaN NaN NaN 0 0 Median 46597000 30193000 16404000 46597000 30193000 16404000 0 0 0 13355 1711 13709 48605;48606;48607;48608 73308;73309;73310;73311;73312 73312 5 VTQSNFAVGYK WLAGYQMNFETAKSRVTQSNFAVGYKTDEF AKSRVTQSNFAVGYKTDEFQLHTNVNDGTE R V T Y K T 1 0 1 0 0 1 0 1 0 0 0 1 0 1 0 1 1 0 1 2 0 0 11 0 1212.6139 A0A1L1UHR1;P21796;B3KTS5;B4DEI3;C9JI87 A0A1L1UHR1 164 174 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2 1.8378E-09 162.97 4 2 0.70614 0.92278 77.861 6 Median 0.68795 0.90611 2.2496 4 0 Median 2.5802 4.0889 0.070462 2 0 Median 801320000 420680000 380640000 624510000 370530000 253980000 176810000 50154000 126650000 13356 524 13710 48609;48610;48611;48612;48613;48614 73313;73314;73315;73316;73317;73318;73319;73320;73321;73322;73323 73314 11 VTSAVEALLSADSASR ARDGLGGLPDIVRDRVTSAVEALLSADSAS TSAVEALLSADSASRKQEVQAWDGEVRQVS R V T S R K 4 1 0 1 0 0 1 0 0 0 2 0 0 0 0 4 1 0 0 2 0 0 16 0 1575.8104 A0A140VJZ1;P45974 A0A140VJZ1 147 162 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes no 2 4.6828E-06 85.554 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11925000 3073500 8851700 3073500 3073500 0 8851700 0 8851700 13357 505 13711 48615;48616;48617 73324;73325;73326 73325 3 VTSEDLILIGNELDLACGER GRLFAVVHFASRQWKVTSEDLILIGNELDL LILIGNELDLACGERIRLEKVLLVGADNFT K V T E R I 1 1 1 2 1 0 3 2 0 2 4 0 0 0 0 1 1 0 0 1 0 0 20 0 2216.0995 A0A024R5G7;F5H7V8;H3BUY0;B4DXI4;Q7Z2W9 A0A024R5G7 23 42 MRPL21 39S ribosomal protein L21, mitochondrial yes no 2 0.00082699 41.227 1 0.25562 0.33948 NaN 1 Median 0.25562 0.33948 NaN 1 0 Median NaN NaN NaN 0 0 Median 2356700 1858100 498510 2356700 1858100 498510 0 0 0 13358 142 13712 48618 73327 73327 1 VTSLLGAGR IGPMLDKEIPPSISRVTSLLGAGRQSLLRT PPSISRVTSLLGAGRQSLLRTAKDCRHTVW R V T G R Q 1 1 0 0 0 0 0 2 0 0 2 0 0 0 0 1 1 0 0 1 0 0 9 0 872.50797 Q9NSI6;A5PLN2 Q9NSI6 100 108 BRWD1 Bromodomain and WD repeat-containing protein 1 yes no 2 0.022713 53.968 1 1 0.78491 1.0179 NaN 1 Median NaN NaN NaN 0 0 Median 0.78491 1.0179 NaN 1 0 Median 7527100 1642200 5884900 4057700 0 4057700 3469400 1642200 1827200 13359 1758 13713 48619;48620 73328;73329 73328 2 VTSSITIYPSDSSSPR TLEKQKPVSKPGPNKVTSSITIYPSDSSSP TSSITIYPSDSSSPRAAPGEALRERHTSTS K V T P R A 0 1 0 1 0 0 0 0 0 2 0 0 0 0 2 6 2 0 1 1 0 0 16 0 1695.8315 A0A024RAC0;Q86V48 A0A024RAC0 792 807 LUZP1 Leucine zipper protein 1 yes no 2 0.00329 90.434 3 0.42602 0.56765 NaN 1 Median 0.42602 0.56765 NaN 1 0 Median NaN NaN NaN 0 0 Median 2134700 752820 1381900 2134700 752820 1381900 0 0 0 13360 238 13714 48621;48622;48623 73330;73331;73332 73331 3 VTSVVFHPSQDLVFSASPDATIR SSEQILATLKGHTKKVTSVVFHPSQDLVFS SQDLVFSASPDATIRIWSVPNASCVQVVRA K V T I R I 2 1 0 2 0 1 0 0 1 1 1 0 0 2 2 4 2 0 0 4 0 0 23 0 2472.2649 Q9UMS4 Q9UMS4 267 289 PRPF19 Pre-mRNA-processing factor 19 yes yes 3 1.5847E-05 66.711 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27125000 5778900 21346000 14165000 5778900 8385800 12960000 0 12960000 13361 1795 13715 48624;48625;48626 73333;73334;73335 73334 3 VTTINQEIQK DCNKVQEKRGAVYERVTTINQEIQKIKLGI AVYERVTTINQEIQKIKLGIQQLKDAAERE R V T Q K I 0 0 1 0 0 2 1 0 0 2 0 1 0 0 0 0 2 0 0 1 0 0 10 0 1172.6401 Q9BZD4;A0A024R8Y0;E9PQC4 Q9BZD4 391 400 NUF2;CDCA1 Kinetochore protein Nuf2 yes no 2 0.0070628 98.582 2 2 0.51379 0.76774 18.323 3 Median 0.45355 0.56913 NaN 1 0 Median 0.52595 0.78067 2.3614 2 0 Median 18708000 12272000 6435700 3766700 2345400 1421300 14941000 9926800 5014400 13362 1727 13716 48627;48628;48629;48630 73336;73337;73338;73339 73339 4 VTTSGLETFTATLR SHEAIQALNTWEVNKVTTSGLETFTATLRE KVTTSGLETFTATLRESSATHSLVGEKHWT K V T L R E 1 1 0 0 0 0 1 1 0 0 2 0 0 1 0 1 5 0 0 1 0 0 14 0 1495.7882 Q9Y2F5 Q9Y2F5 437 450 ICE1 Little elongation complex subunit 1 yes yes 2 0.026199 45.915 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13363 1805 13717 48631 73340 73340 1 VTTVTEIGK SGACYSPEFKGQICRVTTVTEIGKDVIGLR KGQICRVTTVTEIGKDVIGLRISPLQFR__ R V T G K D 0 0 0 0 0 0 1 1 0 1 0 1 0 0 0 0 3 0 0 2 0 0 9 0 946.53351 P53621 P53621 1203 1211 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.023533 49.96 1 0.49402 0.62385 NaN 1 Median 0.49402 0.62385 NaN 1 0 Median NaN NaN NaN 0 0 Median 9035000 6764400 2270600 9035000 6764400 2270600 0 0 0 13364 1371 13718 48632 73341 73341 1 VTVAGGVHISGLHTESAPR DKAQVADVVVSRWLRVTVAGGVHISGLHTE GGVHISGLHTESAPRRQQEQQVPILEKFCF R V T P R R 2 1 0 0 0 0 1 3 2 1 1 0 0 0 1 2 2 0 0 3 0 0 19 0 1886.9963 A0A0U1RQF0;P49327 A0A0U1RQF0 1086 1104 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3;4 0.0084267 44.539 3 2 0.96743 1.345 87.986 4 Median 0.91325 1.2948 12.484 3 0 Median 4.938 7.2111 NaN 1 0 Median 40458000 16420000 24038000 26580000 15292000 11288000 13879000 1128400 12750000 13365 486 13719 48633;48634;48635;48636;48637 73342;73343;73344;73345;73346 73346 4 VTVCQALR ARTLGMAISERPDLRVTVCQALRTLITKGC SERPDLRVTVCQALRTLITKGCQAEADRAE R V T L R T 1 1 0 0 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 8 0 945.50659 B3KMR5;Q5JTH9 B3KMR5 659 666 RRP12 RRP12-like protein yes no 2 0.00020895 102.77 3 0.74604 0.99367 NaN 1 Median 0.74604 0.99367 NaN 1 0 Median NaN NaN NaN 0 0 Median 15553000 11673000 3880100 15553000 11673000 3880100 0 0 0 13366 756 13720 48638;48639;48640 73347;73348;73349;73350 73349 4 VTVDDLPNR VAYDPEDETILEEAKVTVDDLPNRMCADVR ILEEAKVTVDDLPNRMCADVRRNSVERPAE K V T N R M 0 1 1 2 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 2 0 0 9 0 1027.5298 Q9BTC0 Q9BTC0 1439 1447 DIDO1 Death-inducer obliterator 1 yes yes 2 0.0057662 71.501 2 0.6145 0.91983 NaN 1 Median NaN NaN NaN 0 0 Median 0.6145 0.91983 NaN 1 0 Median 10759000 8057100 2701500 0 0 0 10759000 8057100 2701500 13367 1713 13721 48641;48642 73351;73352;73353 73351 3 VTVDTGVIPASEEK KESQRKFEEETVKSKVTVDTGVIPASEEKA KVTVDTGVIPASEEKAETPTAAEDDNEGDK K V T E K A 1 0 0 1 0 0 2 1 0 1 0 1 0 0 1 1 2 0 0 3 0 0 14 0 1443.7457 Q8N5A0;A0A087WUT6;O60841;A0JLR8;Q05CQ1 Q8N5A0 285 298 EIF5B Eukaryotic translation initiation factor 5B yes no 2 0.00065037 100.93 2 0.80217 0.98722 NaN 1 Median 0.80217 0.98722 NaN 1 0 Median NaN NaN NaN 0 0 Median 5017300 2305900 2711300 5017300 2305900 2711300 0 0 0 13368 345 13722 48643;48644 73354;73355 73355 2 VTVFDLK FTCDGNSVISPVGNRVTVFDLKNNKSDTLP VISPVGNRVTVFDLKNNKSDTLPLATRYNV R V T L K N 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 2 0 0 7 0 820.46945 Q15269;A0A0B4J2E5;C9J544 Q15269 37 43 PWP2 Periodic tryptophan protein 2 homolog yes no 2 0.035867 90.777 3 0.88708 1.1218 10.561 3 Median 0.88708 1.1218 10.561 3 0 Median NaN NaN NaN 0 0 Median 71425000 35181000 36245000 71425000 35181000 36245000 0 0 0 13369 1508 13723 48645;48646;48647 73356;73357;73358;73359 73358 4 VTVGDAATTAAASSSSVTR TEPSSPLSDPSDIIRVTVGDAATTAAASSS DAATTAAASSSSVTRDLSLKTEDDQKDMSR R V T T R D 5 1 0 1 0 0 0 1 0 0 0 0 0 0 0 4 4 0 0 3 0 0 19 0 1750.8697 Q9ULJ3;Q5H9S0;B4DTN6 Q9ULJ3 446 464 ZBTB21;DKFZp781N1974 Zinc finger and BTB domain-containing protein 21 yes no 2 4.1614E-24 159.58 3 2 0.72346 1.0089 8.7355 5 Median 0.74224 1.0249 3.2489 3 0 Median 0.66601 0.88911 2.2771 2 0 Median 16770000 9433500 7336700 6055700 3155400 2900300 10714000 6278100 4436400 13370 1790 13724 48648;48649;48650;48651;48652 73360;73361;73362;73363;73364;73365;73366;73367;73368 73361 9 VTVLFAGQHIAK TFSVWYVPEVTGTHKVTVLFAGQHIAKSPF THKVTVLFAGQHIAKSPFEVYVDKSQGDAS K V T A K S 2 0 0 0 0 1 0 1 1 1 1 1 0 1 0 0 1 0 0 2 0 0 12 0 1282.7398 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;F8WE98 P21333 356 367 FLNA Filamin-A yes no 2;3 1.3113E-07 102.61 5 1 0.91582 1.1753 43.405 6 Median 0.90519 1.1495 17.735 5 0 Median 2.3171 3.143 NaN 1 0 Median 101200000 52409000 48788000 97841000 51441000 46400000 3355800 968030 2387700 13371 1287 13725 48653;48654;48655;48656;48657;48658 73369;73370;73371;73372;73373;73374;73375;73376;73377 73373 9 VTVLGHVQR DIKNLVVKRLGYDTRVTVLGHVQRGGTPSA LGYDTRVTVLGHVQRGGTPSAFDRILGSRM R V T Q R G 0 1 0 0 0 1 0 1 1 0 1 0 0 0 0 0 1 0 0 3 0 0 9 0 1007.5876 P17858;Q7L2M7;A0A024R0Y5;P08237;A0A0S2Z4A1;B4E162 A0A024R0Y5 293 301 PFKL;PFKM ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase;ATP-dependent 6-phosphofructokinase, muscle type no no 2;3 0.0033325 87.696 2 2 0.47682 0.64633 134.86 3 Median 0.45852 0.61878 6.1613 2 0 Median 4.3938 6.3897 NaN 1 0 Median 72256000 44354000 27902000 59848000 41930000 17918000 12409000 2423700 9984800 13372 44;1279 13726 48659;48660;48661;48662 73378;73379;73380;73381;73382 73378 5 VTVMASLR PLPEYHVRIAGFDERVTVMASLRRPKRIII IAGFDERVTVMASLRRPKRIIIRGHDEREH R V T L R R 1 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 2 0 0 8 0 875.48987 P78527 P78527 3726 3733 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.026729 42.599 1 0.6601 0.87159 NaN 1 Median NaN NaN NaN 0 0 Median 0.6601 0.87159 NaN 1 0 Median 4459900 2720200 1739800 0 0 0 4459900 2720200 1739800 13373 1427 13727 48663 73383 73383 1 VTVPLVR SPVPVPRAVPVKRPRVTVPLVRCVKTNVPV AVPVKRPRVTVPLVRCVKTNVPVKLFARST R V T V R C 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 3 0 0 7 0 782.50142 A8K4T9;Q53GL6;Q9UKM9;Q5QPL9;Q5QPM0;Q5QPM1 A8K4T9 134 140 RALY RNA-binding protein Raly yes no 2 0.0042222 132.94 2 0.73521 0.99268 7.2413 2 Median 0.73521 0.99268 7.2413 2 0 Median NaN NaN NaN 0 0 Median 23564000 12648000 10916000 23564000 12648000 10916000 0 0 0 13374 608 13728 48664;48665 73384;73385;73386 73385 3 VTWVSQASADQR KKRYYDRVTGVSSFRVTWVSQASADQRAGR SFRVTWVSQASADQRAGRAGRTEPGHCYRL R V T Q R A 2 1 0 1 0 2 0 0 0 0 0 0 0 0 0 2 1 1 0 2 0 0 12 0 1346.6579 Q8IY37;F5H3Y4 Q8IY37 657 668 DHX37 Probable ATP-dependent RNA helicase DHX37 yes no 2 0.012976 50.108 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2490700 2490700 0 0 0 0 2490700 2490700 0 13375 1627 13729 48666 73387 73387 1 VTYHPDGPEGQAYDVDFTPPFR KMVSGMVKHITGSYKVTYHPDGPEGQAYDV PEGQAYDVDFTPPFRRINMVEELEKALGMK K V T F R R 1 1 0 3 0 1 1 2 1 0 0 0 0 2 4 0 2 0 2 2 0 0 22 0 2507.1394 Q15046 Q15046 371 392 KARS Lysine--tRNA ligase yes yes 3 1.7819E-05 71.946 3 0.44996 0.6184 2.3433 2 Median 0.44996 0.6184 2.3433 2 0 Median NaN NaN NaN 0 0 Median 11678000 7803100 3874900 11678000 7803100 3874900 0 0 0 13376 1502 13730 48667;48668;48669 73388;73389;73390;73391;73392;73393 73392 6 VVASGPGLEHGK SPFKADIEMPFDPSKVVASGPGLEHGKVGE PSKVVASGPGLEHGKVGEAGLLSVDCSEAG K V V G K V 1 0 0 0 0 0 1 3 1 0 1 1 0 0 1 1 0 0 0 2 0 0 12 0 1149.6142 O75369;A0A024R321;Q68CT4;E7EN95 O75369 1136 1147 FLNB;DKFZp686A1668 Filamin-B yes no 3 0.026064 33.782 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4760000 4760000 0 4760000 4760000 0 0 0 0 13377 1199 13731 48670 73394 73394 1 VVAVFVQGPAWQFK VVDQPLKLMPQDWDRVVAVFVQGPAWQFKG RVVAVFVQGPAWQFKGWPWLLPDGSPVDIF R V V F K G 2 0 0 0 0 2 0 1 0 0 0 1 0 2 1 0 0 1 0 4 0 0 14 0 1574.8609 Q6P1J9;A0A1B0GUB2;A0A0S2Z5M9 Q6P1J9 442 455 CDC73 Parafibromin yes no 2 0.00051358 60.828 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4952700 0 4952700 0 0 0 4952700 0 4952700 13378 1590 13732 48671;48672 73395;73396 73395 2 VVCLFR IEELNKTANGNVEAKVVCLFRRRDISSSLN TANGNVEAKVVCLFRRRDISSSLNSLADSN K V V F R R 0 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 2 0 0 6 0 792.43163 A0A024R534;O94776 A0A024R534 42 47 MTA2 Metastasis-associated protein MTA2 yes no 2 0.038834 105.82 2 0.70689 0.94534 3.789 2 Median 0.70689 0.94534 3.789 2 0 Median NaN NaN NaN 0 0 Median 41939000 22624000 19315000 41939000 22624000 19315000 0 0 0 13379 133 13733 48673;48674 73397;73398;73399 73397 3 VVCVYGGTGISEQIAELK ITKECKKFSKTLGLRVVCVYGGTGISEQIA VYGGTGISEQIAELKRGAEIIVCTPGRMID R V V L K R 1 0 0 0 1 1 2 3 0 2 1 1 0 0 0 1 1 0 1 3 0 0 18 0 1921.9819 A8K6X3;A0A0C4DG89;Q7L014;D3DQA6;D6RJA6 A8K6X3 476 493 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.00045939 72.731 3 0.65994 0.81377 NaN 1 Median 0.65994 0.81377 NaN 1 0 Median NaN NaN NaN 0 0 Median 4388000 3419000 968940 4388000 3419000 968940 0 0 0 13380 424 13734 48675;48676;48677 73400;73401;73402 73402 3 VVDALGNAIDGK GAIVDVPVGEELLGRVVDALGNAIDGKGPI LGRVVDALGNAIDGKGPIGSKTRRRVGLKA R V V G K G 2 0 1 2 0 0 0 2 0 1 1 1 0 0 0 0 0 0 0 2 0 0 12 0 1170.6245 K7ERX7;V9HW26;P25705;B4DGW3;K7EK77;K7EJP1;K7EQH4;K7ENJ4 K7ERX7 150 161 ATP5A1;HEL-S-123m ATP synthase subunit alpha;ATP synthase subunit alpha, mitochondrial yes no 2 0.016554 46.844 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2349100 0 2349100 0 0 0 2349100 0 2349100 13381 1154 13735 48678 73403 73403 1 VVDALNQGLPR KESGAINTSLFVLGKVVDALNQGLPRVPYR VLGKVVDALNQGLPRVPYRDSKLTRLLQDS K V V P R V 1 1 1 1 0 1 0 1 0 0 2 0 0 0 1 0 0 0 0 2 0 0 11 0 1180.6564 Q14807;A0A024R632;B7Z9T5;H3BRB3 Q14807 307 317 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 1.532E-05 99.802 1 1.0081 1.3247 NaN 1 Median 1.0081 1.3247 NaN 1 0 Median NaN NaN NaN 0 0 Median 8341800 4410000 3931800 8341800 4410000 3931800 0 0 0 13382 1497 13736 48679 73404;73405 73404 2 VVDDEIYYFR MKKFKGLKRFSLSAKVVDDEIYYFRKPIVP SLSAKVVDDEIYYFRKPIVPQKEPSPLLEK K V V F R K 0 1 0 2 0 0 1 0 0 1 0 0 0 1 0 0 0 0 2 2 0 0 10 0 1317.6241 Q86U86;E7EVG2;Q5EBM5 Q86U86 1283 1292 PBRM1;PB1 Protein polybromo-1 yes no 2 0.016042 48.796 2 0.87222 1.1356 16.238 2 Median NaN NaN NaN 0 0 Median 0.87222 1.1356 16.238 2 0 Median 9173600 4571500 4602100 0 0 0 9173600 4571500 4602100 13383 1620 13737 48680;48681 73406;73407;73408 73407 3 VVDHVLGPLNSSTSLGQNTSTSSNLQR VSTTGTATDLESSAKVVDHVLGPLNSSTSL TSLGQNTSTSSNLQRTVVTVGNKNSHLDGS K V V Q R T 0 1 3 1 0 2 0 2 1 0 4 0 0 0 1 6 3 0 0 3 0 0 27 0 2810.4159 Q03164 Q03164 2242 2268 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 3 6.9618E-32 140.07 4 2 0.83722 1.1589 9.537 6 Median 0.83722 1.1102 4.2262 4 0 Median 0.86296 1.3258 7.2173 2 0 Median 82584000 41575000 41009000 40004000 19564000 20441000 42580000 22011000 20568000 13384 1438 13738 48682;48683;48684;48685;48686;48687 73409;73410;73411;73412;73413;73414;73415;73416;73417;73418;73419;73420;73421;73422;73423;73424;73425 73410 17 VVDLAPLHLDAR KALGYMERAAESYGKVVDLAPLHLDARISL YGKVVDLAPLHLDARISLSTLQQQLGQPEK K V V A R I 2 1 0 2 0 0 0 0 1 0 3 0 0 0 1 0 0 0 0 2 0 0 12 0 1317.7405 Q9Y5Q9;H7C0C0 Q9Y5Q9 482 493 GTF3C3 General transcription factor 3C polypeptide 3 yes no 3 0.0032953 74.46 4 1 0.55799 0.75431 28.716 5 Median 0.51825 0.70097 14.421 4 0 Median 1.0044 1.2766 NaN 1 0 Median 27044000 16480000 10565000 22635000 14455000 8179300 4409700 2024300 2385400 13385 1831 13739 48688;48689;48690;48691;48692 73426;73427;73428;73429;73430;73431;73432;73433 73428 8 VVDLLAPYAK MEMSVEQEILVTGIKVVDLLAPYAKGGKIG VTGIKVVDLLAPYAKGGKIGLFGGAGVGKT K V V A K G 2 0 0 1 0 0 0 0 0 0 2 1 0 0 1 0 0 0 1 2 0 0 10 0 1087.6277 H0YH81;Q0QEN7;V9HW31;P06576;F8W079 H0YH81 126 135 ATP5B;HEL-S-271 ATP synthase subunit beta;ATP synthase subunit beta, mitochondrial yes no 2 0.0094899 79.906 2 1 0.58316 0.74678 NaN 1 Median 0.58316 0.74678 NaN 1 0 Median NaN NaN NaN 0 0 Median 6615400 2351300 4264100 3628400 2351300 1277100 2987000 0 2987000 13386 1100 13740 48693;48694;48695 73434;73435;73436 73436 3 VVDLMAHMASKE KLISWYDNEFGYSNRVVDLMAHMASKE___ SNRVVDLMAHMASKE_______________ R V V K E - 2 0 0 1 0 0 1 0 1 0 1 1 2 0 0 1 0 0 0 2 0 0 12 1 1329.6421 V9HVZ4;P04406;Q2TSD0;E7EUT5;Q16768 V9HVZ4 324 335 HEL-S-162eP;GAPDH;GAPD Glyceraldehyde-3-phosphate dehydrogenase yes no 2 0.0018178 46.73 1 4.4867 6.6027 NaN 1 Median NaN NaN NaN 0 0 Median 4.4867 6.6027 NaN 1 0 Median 8035700 1597600 6438100 0 0 0 8035700 1597600 6438100 13387 1231 13741 48696 73437 73437 479;480 1 VVDPFSK NKRLTKGGKKGAKKKVVDPFSKKDWYDVKA GKKGAKKKVVDPFSKKDWYDVKAPAMFNIR K V V S K K 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 2 0 0 7 0 790.4225 Q6NXR8;P61247;A8K4W0;B7Z3M5;H0Y8L7;E9PFI5;H0Y9Y4;D6RI02 Q6NXR8 21 27 RPS3A 40S ribosomal protein S3a yes no 2 0.034491 94.006 1 0.78718 1.0261 NaN 1 Median 0.78718 1.0261 NaN 1 0 Median NaN NaN NaN 0 0 Median 69502000 33137000 36365000 69502000 33137000 36365000 0 0 0 13388 1393 13742 48697 73438 73438 1 VVDPFSKK NKRLTKGGKKGAKKKVVDPFSKKDWYDVKA KKGAKKKVVDPFSKKDWYDVKAPAMFNIRN K V V K K D 0 0 0 1 0 0 0 0 0 0 0 2 0 1 1 1 0 0 0 2 0 0 8 1 918.51747 Q6NXR8;P61247;A8K4W0;B7Z3M5;H0Y8L7;E9PFI5;H0Y9Y4;D6RI02 Q6NXR8 21 28 RPS3A 40S ribosomal protein S3a yes no 2;3 0.012413 73.26 4 0.94589 1.1654 12.408 4 Median 0.94589 1.1654 12.408 4 0 Median NaN NaN NaN 0 0 Median 94375000 48547000 45828000 94375000 48547000 45828000 0 0 0 13389 1393 13743 48698;48699;48700;48701 73439;73440;73441;73442 73442 4 VVDRDSEEAEIIR DPIDVNYEKLKTDIKVVDRDSEEAEIIRKY IKVVDRDSEEAEIIRKYVKNTHATTHNAYD K V V I R K 1 2 0 2 0 0 3 0 0 2 0 0 0 0 0 1 0 0 0 2 0 0 13 1 1529.7686 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 803 815 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2;3 6.4028E-09 90.697 3 2 0.7806 1.0836 46.403 5 Median 0.94473 1.2815 10.726 3 0 Median 0.33682 0.53135 3.8345 2 0 Median 175050000 116380000 58673000 65604000 35697000 29907000 109450000 80684000 28766000 13390 107 13744 48702;48703;48704;48705;48706 73443;73444;73445;73446;73447;73448;73449;73450 73447 8 VVDRDSEEAEIIRK DPIDVNYEKLKTDIKVVDRDSEEAEIIRKY KVVDRDSEEAEIIRKYVKNTHATTHNAYDL K V V R K Y 1 2 0 2 0 0 3 0 0 2 0 1 0 0 0 1 0 0 0 2 0 0 14 2 1657.8635 A0A024R3T8;P09874;B2R5W3 A0A024R3T8 803 816 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2;3 7.9248E-10 106.42 8 2 0.85145 1.0129 30.826 8 Median 0.93797 1.1344 26.841 6 0 Median 0.38879 0.67995 9.6669 2 0 Median 175980000 103610000 72366000 103840000 51853000 51989000 72139000 51762000 20377000 13391 107 13745 48707;48708;48709;48710;48711;48712;48713;48714;48715;48716 73451;73452;73453;73454;73455;73456;73457;73458;73459;73460;73461 73461 11 VVEATNSVTAVR SNQQLEDLINQGREKVVEATNSVTAVRIQP REKVVEATNSVTAVRIQPLEDIISAVWKEN K V V V R I 2 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 2 0 0 4 0 0 12 0 1244.6725 A4LAA3;P46100;B4DHH8;B4DLE1;B4DLW1 A4LAA3 2335 2346 ATRX Transcriptional regulator ATRX yes no 2 2.0427E-07 118.28 4 2 0.62105 0.83728 29.182 6 Median 0.596 0.81328 11.842 4 0 Median 0.91609 1.3326 6.0377 2 0 Median 51837000 30554000 21284000 36965000 23427000 13539000 14872000 7127100 7745000 13392 556 13746 48717;48718;48719;48720;48721;48722 73462;73463;73464;73465;73466;73467;73468;73469;73470 73465 9 VVEAVNSDSDSEFGIPK SDTVPKPKRAPKQKKVVEAVNSDSDSEFGI EAVNSDSDSEFGIPKKTTTPKGKGRGAKKR K V V P K K 1 0 1 2 0 0 2 1 0 1 0 1 0 1 1 3 0 0 0 3 0 0 17 0 1791.8527 Q71UH4;Q02880;Q59H80;B4DLV2;Q8WTY5 Q71UH4 1488 1504 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 2.3295E-19 164.81 4 1 0.56429 0.78305 45.138 4 Median 0.78836 1.0315 52.983 3 0 Median 0.40391 0.59443 NaN 1 0 Median 20146000 12881000 7264400 12193000 7598000 4594800 7952900 5283300 2669600 13393 1437 13747 48723;48724;48725;48726;48727 73471;73472;73473;73474;73475;73476;73477 73472 7 VVEELTR GSGMKREATADDLIKVVEELTRIH______ ATADDLIKVVEELTRIH_____________ K V V T R I 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 7 0 844.46543 Q16531;B4DSA8;B4DZP5 Q16531 1132 1138 DDB1 DNA damage-binding protein 1 yes no 2 0.014944 91.906 1 1 0.87083 1.2687 1.2296 2 Median 0.90288 1.2577 NaN 1 0 Median 0.83992 1.2798 NaN 1 0 Median 105180000 55135000 50040000 85197000 43891000 41305000 19978000 11244000 8734500 13394 1520 13748 48728;48729 73478;73479;73480 73478 3 VVESGGPEILK SFMSQLLSSNNFLKKVVESGGPEILKGLEE FLKKVVESGGPEILKGLEERLLETVLGYIS K V V L K G 0 0 0 0 0 0 2 2 0 1 1 1 0 0 1 1 0 0 0 2 0 0 11 0 1126.6234 B2RWN5;Q9H583;Q5T3Q7;A0A024R3R7;A2VDI1;B3KWS1;B4E263;B7ZAU8;Q8N7L7 B2RWN5 1534 1544 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.00023901 87.149 4 0.8616 1.0775 4.7159 4 Median 0.8616 1.0775 4.7159 4 0 Median NaN NaN NaN 0 0 Median 61254000 32831000 28423000 61254000 32831000 28423000 0 0 0 13395 748 13749 48730;48731;48732;48733 73481;73482;73483;73484;73485 73485 5 VVEYSDVILEVLDAR DDEATRKAYYKEFRKVVEYSDVILEVLDAR VVEYSDVILEVLDARDPLGCRCFQMEEAVL K V V A R D 1 1 0 2 0 0 2 0 0 1 2 0 0 0 0 1 0 0 1 4 0 0 15 0 1718.9091 Q05DU1;A0A024R9Y6;Q9NVN8 Q05DU1 131 145 GNL3L Guanine nucleotide-binding protein-like 3-like protein yes no 2 1.4806E-08 127.56 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13396 233 13750 48734 73486 73486 1 VVFELFSDVCPK RCFFDIAINNQPAGRVVFELFSDVCPKTCE AGRVVFELFSDVCPKTCENFRCLCTGEKGT R V V P K T 0 0 0 1 1 0 1 0 0 0 1 1 0 2 1 1 0 0 0 3 0 0 12 0 1438.7166 Q32LZ0;Q2NKQ6;E9PG73;Q13427;C9JT64;C9J679;C9JN15;Q6P432 Q32LZ0 24 35 PPIG Peptidyl-prolyl cis-trans isomerase G;Peptidyl-prolyl cis-trans isomerase yes no 2 0.00068974 86.898 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4485300 4485300 0 4485300 4485300 0 0 0 0 13397 1026 13751 48735 73487 73487 1 VVFQEFR VLEGIRICRQGFPNRVVFQEFRQRYEILTP CRQGFPNRVVFQEFRQRYEILTPNSIPKGF R V V F R Q 0 1 0 0 0 1 1 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 7 0 923.4865 A0A024R1N1;P35579;Q86XU5;B4E3S1;A0A0U4BW16 A0A024R1N1 712 718 MYH9 Myosin-9 no no 2 0.0097424 118.01 3 2 0.9796 1.3406 74.528 4 Median 0.97095 1.324 4.121 3 0 Median 3.8806 5.8095 NaN 1 0 Median 205420000 87868000 117550000 177120000 84128000 92995000 28299000 3739700 24559000 13398 61;490 13752 48736;48737;48738;48739;48740 73488;73489;73490;73491;73492;73493;73494 73490 7 VVFRDPYR KDIIHDPGRGAPLAKVVFRDPYRFKKRTEL RGAPLAKVVFRDPYRFKKRTELFIAAEGIH K V V Y R F 0 2 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 2 0 0 8 1 1050.5611 P62917;B4DVG7;E9PKZ0;E9PKU4;G3V1A1 P62917 61 68 RPL8 60S ribosomal protein L8 yes no 3 0.0094491 52.482 1 2 0.72105 0.63679 26.44 3 Plateau 0.72105 0.99283 NaN 1 0 Median 0.4017 0.6284 1.8756 2 0 Median 704710000 412510000 292210000 612920000 346040000 266880000 91797000 66469000 25327000 13399 1417 13753 48741;48742;48743 73495;73496;73497;73498 73495 4 VVGAVIDQGLITR KRRRVLNRERRLRHRVVGAVIDQGLITRHH HRVVGAVIDQGLITRHHLKKRASSARANIT R V V T R H 1 1 0 1 0 1 0 2 0 2 1 0 0 0 0 0 1 0 0 3 0 0 13 0 1339.7823 A0A0B4J220;L0R588;E9PLD3;E9PRG8 A0A0B4J220 36 48 C11orf98;C11orf48 Uncharacterized protein C11orf98 yes no 2 1.0932E-20 190.57 4 0.78909 1.0866 1.797 4 Median 0.78909 1.0866 1.797 4 0 Median NaN NaN NaN 0 0 Median 380100000 206770000 173330000 380100000 206770000 173330000 0 0 0 13400 415 13754 48744;48745;48746;48747 73499;73500;73501;73502;73503;73504;73505;73506 73502 8 VVGCSCVVVK WVGLCKIDREGKPRKVVGCSCVVVKDYGKE GKPRKVVGCSCVVVKDYGKESQAKDVIEEY K V V V K D 0 0 0 0 2 0 0 1 0 0 0 1 0 0 0 1 0 0 0 5 0 0 10 0 1105.5624 P25398 P25398 103 112 RPS12 40S ribosomal protein S12 yes yes 2 1.1831E-07 124.23 4 0.85436 1.0759 3.0911 4 Median 0.85436 1.0759 3.0911 4 0 Median NaN NaN NaN 0 0 Median 197420000 107310000 90113000 197420000 107310000 90113000 0 0 0 13401 1296 13755 48748;48749;48750;48751 73507;73508;73509;73510;73511;73512;73513 73512 7 VVGDVAYDEAK GINYVPDDKKPNGRKVVGDVAYDEAKERAS NGRKVVGDVAYDEAKERASFITPVPGGVGP K V V A K E 2 0 0 2 0 0 1 1 0 0 0 1 0 0 0 0 0 0 1 3 0 0 11 0 1164.5663 A0A024R652;F5H2F4;B7Z809;P11586 A0A024R652 252 262 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.038389 37.717 1 1.7117 2.3927 NaN 1 Median NaN NaN NaN 0 0 Median 1.7117 2.3927 NaN 1 0 Median 4465000 1584200 2880800 0 0 0 4465000 1584200 2880800 13402 154 13756 48752 73514 73514 1 VVGEDVATSSSAK SSSALYPVGRVSKEKVVGEDVATSSSAKKA EKVVGEDVATSSSAKKATGRKKSSSHDSGT K V V A K K 2 0 0 1 0 0 1 1 0 0 0 1 0 0 0 3 1 0 0 3 0 0 13 0 1248.6198 Q03164;E9PR05 Q03164 916 928 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 3.2468E-06 115 3 2 0.9131 1.2334 26.127 5 Median 1.207 1.5289 28.762 3 0 Median 0.80501 1.1546 9.3337 2 0 Median 31142000 14726000 16416000 19714000 8643200 11071000 11428000 6082500 5345500 13403 1438 13757 48753;48754;48755;48756;48757 73515;73516;73517;73518;73519;73520;73521;73522 73516 8 VVGNPCPICR VPPQRTRKTCIRRNKVVGNPCPICRDHKLH IRRNKVVGNPCPICRDHKLHVDFRESV___ K V V C R D 0 1 1 0 2 0 0 1 0 1 0 0 0 0 2 0 0 0 0 2 0 0 10 0 1170.5638 B4DFG6;B0S7P4;Q9Y676 B4DFG6 100 109 MRPS18B 28S ribosomal protein S18b, mitochondrial yes no 2 0.00047448 85.212 1 0.54887 0.75352 NaN 1 Median 0.54887 0.75352 NaN 1 0 Median NaN NaN NaN 0 0 Median 6405000 4500800 1904300 6405000 4500800 1904300 0 0 0 13404 667 13758 48758 73523 73523 1 VVGSVGQHTGEPVEELALSHCGR STDGVIRAVNILPNRVVGSVGQHTGEPVEE TGEPVEELALSHCGRFLASSGHDQRLKFWD R V V G R F 1 1 0 0 1 1 3 4 2 0 2 0 0 0 1 2 1 0 0 4 0 0 23 0 2417.1758 Q9H6Y2;B4DE13;G3V1J0 Q9H6Y2 286 308 WDR55 WD repeat-containing protein 55 yes no 4 0.01553 20.199 1 0.74975 1.1099 NaN 1 Median NaN NaN NaN 0 0 Median 0.74975 1.1099 NaN 1 0 Median 6527900 3618100 2909700 0 0 0 6527900 3618100 2909700 13405 1740 13759 48759 73524 73524 1 VVHIIQAR LSLDINKLPGEKLGRVVHIIQAREPSLRDS PGEKLGRVVHIIQAREPSLRDSNPEEIEID R V V A R E 1 1 0 0 0 1 0 0 1 2 0 0 0 0 0 0 0 0 0 2 0 0 8 0 934.57123 A0A024RCR5;A0A0G2JK44;P25440;H0Y6K2;A0A140T9E9;X5CF57;A0A0G2JHN8;A0A140T9I1 A0A024RCR5 665 672 BRD2 Bromodomain-containing protein 2 yes no 2;3 0.0070205 85.265 1 2 0.50153 0.69512 43.249 3 Median 0.95803 1.3161 NaN 1 0 Median 0.4771 0.63327 13.179 2 0 Median 20375000 12156000 8218800 6723400 3250200 3473200 13651000 8905500 4745700 13406 300 13760 48760;48761;48762 73525;73526;73527;73528 73526 4 VVHIIQSR LSLDINRLPGEKLGRVVHIIQSREPSLRDS PGEKLGRVVHIIQSREPSLRDSNPDEIEID R V V S R E 0 1 0 0 0 1 0 0 1 2 0 0 0 0 0 1 0 0 0 2 0 0 8 0 950.56615 A0A024R8H6;Q15059;B4DS09;Q58F21;O60885;A0A024R7H8 O60885 595 602 BRD3;BRDT;BRD4 Bromodomain-containing protein 3;Bromodomain testis-specific protein;Bromodomain-containing protein 4 no no 2;3 0.0012299 110.31 2 2 0.79385 1.1439 10.664 3 Plateau 0.80568 1.1188 NaN 1 0 Median 0.76224 1.0378 13.774 2 0 Median 18663000 11856000 6807700 8691300 6486900 2204400 9972100 5368700 4603400 13407 198;1194 13761 48763;48764;48765;48766 73529;73530;73531;73532 73529 4 VVHIMDFQR QGPRHMQKGRVETSRVVHIMDFQRGKNLRY RVETSRVVHIMDFQRGKNLRYQLLQLVEPF R V V Q R G 0 1 0 1 0 1 0 0 1 1 0 0 1 1 0 0 0 0 0 2 0 0 9 0 1143.5859 A0A0R4J2E8;A8MXP9;P43243;D6REM6;Q68D11;D6R991;H0Y8T4;Q5CZA7;B3KM87;B4DRS1;B4DF66;D6RBI2;D6RE02;D6RIA2;D6RAM9;D6RAY2 A0A0R4J2E8 399 407 MATR3;DKFZp686K23100;DKFZp686K0542 Matrin-3 yes no 3 0.0066082 48.423 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6242500 6242500 0 6242500 6242500 0 0 0 0 13408 445 13762 48767 73533 73533 1 VVILNVDLLK YHRAGQEVESGQKKKVVILNVDLLKLEVHV GQKKKVVILNVDLLKLEVHVSLHQDLVNRK K V V L K L 0 0 1 1 0 0 0 0 0 1 3 1 0 0 0 0 0 0 0 3 0 0 10 0 1124.7169 Q14690;B4DH82 Q14690 894 903 PDCD11 Protein RRP5 homolog yes no 2 4.7885E-05 106.68 5 2 0.91493 1.179 20.271 5 Median 0.99211 1.2107 7.8824 3 0 Median 0.67519 0.96306 28.612 2 0 Median 69318000 40026000 29292000 57759000 32888000 24871000 11560000 7138300 4421200 13409 1494 13763 48768;48769;48770;48771;48772;48773;48774 73534;73535;73536;73537;73538;73539;73540;73541;73542;73543 73541 10 VVITCPQDFPHCSIPLR GTYLPSMPRSYKPQRVVITCPQDFPHCSIP ITCPQDFPHCSIPLRVGLPLLSPEFLLTGV R V V L R V 0 1 0 1 2 1 0 0 1 2 1 0 0 1 3 1 1 0 0 2 0 0 17 0 2038.0128 Q14676 Q14676 2038 2054 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 0.0071089 35.757 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3296300 3296300 0 3296300 3296300 0 0 0 0 13410 1491 13764 48775 73544;73545 73545 2 VVITYLSFLCAR MINHSDMSNTIPDEKVVITYLSFLCARLLD DEKVVITYLSFLCARLLDLRKEIRAARLIQ K V V A R L 1 1 0 0 1 0 0 0 0 1 2 0 0 1 0 1 1 0 1 2 0 0 12 0 1440.7799 Q8IZT6;B3KWI2;Q5VYL4;B3KM85 Q8IZT6 1248 1259 ASPM Abnormal spindle-like microcephaly-associated protein yes no 2 8.6326E-07 128.27 3 0.76169 1.012 NaN 1 Median 0.76169 1.012 NaN 1 0 Median NaN NaN NaN 0 0 Median 4215700 3185700 1030000 4215700 3185700 1030000 0 0 0 13411 1631 13765 48776;48777;48778 73546;73547;73548 73546 3 VVIVDPETGK RERKTSSKSSVRKRRVVIVDPETGKEMSVY VRKRRVVIVDPETGKEMSVYEAYRKGLIDH R V V G K E 0 0 0 1 0 0 1 1 0 1 0 1 0 0 1 0 1 0 0 3 0 0 10 0 1055.5863 Q15149;D3DWL0;Q96IE3 Q15149 4278 4287 PLEC;PLEC1 Plectin yes no 2 0.0012529 78.334 3 2 0.64673 0.80484 82.366 5 Median 0.64673 0.79851 8.6845 3 0 Plateau 2.2492 3.304 11.243 2 0 Median 84536000 47427000 37109000 69556000 42466000 27090000 14980000 4960700 10019000 13412 1507 13766 48779;48780;48781;48782;48783 73549;73550;73551;73552;73553;73554;73555;73556 73550 8 VVIVDPETNK KQVQTSQKNTLRKRRVVIVDPETNKEMSVQ LRKRRVVIVDPETNKEMSVQEAYKKGLIDY R V V N K E 0 0 1 1 0 0 1 0 0 1 0 1 0 0 1 0 1 0 0 3 0 0 10 0 1112.6077 P15924;Q4LE79 P15924 2466 2475 DSP;DSP variant protein Desmoplakin yes no 2 0.038223 74.464 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2920200 2920200 0 2920200 2920200 0 0 0 0 13413 1270 13767 48784 73557 73557 1 VVLIGGKPDR TIKLFQECCPHSTDRVVLIGGKPDRVVECI HSTDRVVLIGGKPDRVVECIKIILDLISES R V V D R V 0 1 0 1 0 0 0 2 0 1 1 1 0 0 1 0 0 0 0 2 0 0 10 1 1052.6342 A0A024R228;P61978;B4DUQ1;Q5EC54;Q5T6W2;B4DFF1 A0A024R228 192 201 HNRPK;HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 3 0.001693 96.143 3 0.30758 0.40899 9.5644 3 Median 0.30758 0.40899 9.5644 3 0 Median NaN NaN NaN 0 0 Median 103590000 79671000 23915000 103590000 79671000 23915000 0 0 0 13414 77 13768 48785;48786;48787 73558;73559;73560;73561;73562;73563 73561 6 VVLLGAPNAGK LVHHPDMPENSRVLRVVLLGAPNAGKSTLS RVLRVVLLGAPNAGKSTLSNQLLGRKVFPV R V V G K S 2 0 1 0 0 0 0 2 0 0 2 1 0 0 1 0 0 0 0 2 0 0 11 0 1037.6233 J3QSB2;J3QRV9;O75616;J3QT61 J3QSB2 116 126 ERAL1 GTPase Era, mitochondrial yes no 2 0.017301 51.854 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4330000 0 4330000 0 0 0 4330000 0 4330000 13415 1147 13769 48788;48789 73564;73565 73564 2 VVLLGEFLHPCEDDIVCK RGGFNKGQDQGPPERVVLLGEFLHPCEDDI LGEFLHPCEDDIVCKCTTDENKVPYFNAPV R V V C K C 0 0 0 2 2 0 2 1 1 1 3 1 0 1 1 0 0 0 0 3 0 0 18 0 2142.0489 A0A024RDJ3;Q9NY12 A0A024RDJ3 70 87 NOLA1;GAR1 H/ACA ribonucleoprotein complex subunit 1 yes no 2;3 2.3074E-24 163.99 8 2 0.74471 0.97348 14.914 10 Median 0.75242 0.98884 16.875 8 0 Median 0.61907 0.96571 0.17521 2 0 Median 681240000 385450000 295790000 628370000 352110000 276260000 52871000 33338000 19533000 13416 317 13770 48790;48791;48792;48793;48794;48795;48796;48797;48798;48799 73566;73567;73568;73569;73570;73571;73572;73573;73574;73575;73576;73577;73578;73579;73580;73581 73567 15 VVLLHGPPGTGK FSDKNVNSNLITWNRVVLLHGPPGTGKTSL WNRVVLLHGPPGTGKTSLCKALAQKLTIRL R V V G K T 0 0 0 0 0 0 0 3 1 0 2 1 0 0 2 0 1 0 0 2 0 0 12 0 1173.687 Q15645;H0YAL2 Q15645 174 185 TRIP13 Pachytene checkpoint protein 2 homolog yes no 3 0.010245 61.11 2 0.41192 0.51797 16.654 2 Median 0.41192 0.51797 16.654 2 0 Median NaN NaN NaN 0 0 Median 52314000 35937000 16377000 52314000 35937000 16377000 0 0 0 13417 1514 13771 48800;48801 73582;73583;73584 73582 3 VVLLTGETSTDLK YMDWYEKFQDRLNKKVVLLTGETSTDLKLL KKVVLLTGETSTDLKLLGKGNIIISTPEKW K V V L K L 0 0 0 1 0 0 1 1 0 0 3 1 0 0 0 1 3 0 0 2 0 0 13 0 1374.7606 O75643;A4FU77 O75643 1405 1417 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 1.2874E-16 173.24 4 1 0.62779 0.78961 49.607 4 Median 0.59147 0.76034 16.2 3 0 Median 1.2558 1.8758 NaN 1 0 Median 58484000 39808000 18676000 50861000 36389000 14472000 7623000 3419000 4204000 13418 1206 13772 48802;48803;48804;48805;48806 73585;73586;73587;73588;73589;73590;73591;73592 73585 8 VVLNQQAYVLFYLR WYQMNDSLVHSSNVKVVLNQQAYVLFYLRI KVVLNQQAYVLFYLRIPGSKKSPEGLISRT K V V L R I 1 1 1 0 0 2 0 0 0 0 3 0 0 1 0 0 0 0 2 3 0 0 14 0 1724.9614 A0A024R8V6;Q9P275;A0A075B784;Q9H9C5;E9PEW0;B3KMW2;K7EMM6 A0A024R8V6 409 422 USP36;DUB1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 yes no 2 1.1645E-05 119.68 2 0.9727 1.3618 22.848 2 Median 0.9727 1.3618 22.848 2 0 Median NaN NaN NaN 0 0 Median 4138500 2218300 1920200 4138500 2218300 1920200 0 0 0 13419 205 13773 48807;48808 73593;73594;73595 73595 3 VVLPIEAPIR FLEPGDLRLLDVDNRVVLPIEAPIRMMITS DVDNRVVLPIEAPIRMMITSQDVLHSWAVP R V V I R M 1 1 0 0 0 0 1 0 0 2 1 0 0 0 2 0 0 0 0 2 0 0 10 0 1105.6859 A0A0E3JSF1;A0A0E3JG40;D3WYY8;Q14XT3;X2D546;X2D544;X2D537;X2D4V5;X2D4V3;X2D4U5;X2D4U2;X2D4K6;X2D4F2;X2D4E2;X2D4D6;X2D3Z8;X2D3Z7;X2D3Z6;K7WG81;H9E7F7;A0A059QM31;H9E7P8;A0A059RTG7;A0A059QNV4;E2DTL8;A0A1B1PEQ8;H9E7W2;G3CA49;K7WVJ5;H9E7T7;X5C6M5;X5BKA4;X2CK15;X2C841;W8DFH5;W8DBX9;W8D4U9;W8D1X2;V9K571;V9JPM6;V9JD22;V9J3S1;U5Z9R9;U5Z487;U3LSI8;U3L556;T1SWS8;T1Q632;S4STI1;R9Y478;R9Y412;Q9B2U8;Q9B138;Q8WCW3;Q8HNR6;Q8HNR1;Q85KS0;Q7YEH2;Q7YCE6;Q7Y6N0;Q7Y6M3;Q7Y626;Q6VJJ3;Q6VJD8;Q6VIG7;Q6RQ80;Q6RNN7;Q6RKW8;Q6R0V6;Q5XRW8;Q5SB08;Q5SAP1;Q5SA98;Q5S971;Q4GW12;Q4GVP5;Q4GQP0;Q4GHE1;Q4GCZ4;Q4GCG2;Q4GCC3;Q4F4V6;Q4EZD4;Q305H0;Q19MP7;Q15HH9;Q0Z7S0;Q0Z7K3;Q0Z7J0;Q0Z7F1;Q0Z7D8;Q09U41;Q06TE6;N0BMC4;L7XQ86;L7XMG0;L7NVC9;K9M370;K7X9X2;J7HPF9;J7FG21;I6UIH6;I6PZI4;I6PRP7;I6N6Q6;I3Q4M2;I3PYD8;I2E7Z7;H9T3W9;H9SA70;H9S868;H9S5Y2;H9S054;H9RV93;H9RKS9;H9RJL3;H9RF01;H9RD12;H9RAX1;H9RA87;H9QLC8;H9QH59;H9Q9T5;H9PWQ9;H9PMX8;H9PDV6;H9MK30;H9M675;H9LMC2;H9E7D1;G9LKX8;G9LHJ5;G9LG51;G9LB98;G8JF18;G8JE99;G5D8Q5;G5D8N2;G5D8K6;G5D8J3;G5D8C8;G5D863;G4W3U1;G4W3M6;F2WJ84;F2WI31;F2WGV2;F1CIN6;F1AZF2;F1AZ87;E9P659;E7E4E0;E7CNQ9;E7CM18;E5FWC0;E5EWR3;E5EWL4;E5EWG2;E5E1V1;E5E1A6;E5E079;E5DZN4;E2JFC4;E0AF97;D2IKF4;D1G421;C8YBL1;C8Y3Q5;C8Y3G4;C8XWJ6;C5H6M8;C5H6M7;C5H6M5;C5H6M4;C5H6M3;C5H6L3;C5H6K7;C5H6K6;C5H6K5;B5M7M0;B3GUF3;B3DE06;B2XP28;B2XL43;B2XIR3;B2XHT9;B2WRY8;B2CB37;B1W855;A7LFA2;A7LF11;A6ZHA9;A6ZFK3;A6ZF47;A6ZEU4;A6Z3M5;A1Z455;A0SA07;A0S3T1;A0S2P1;A0A1S6N0P5;A0A1S6M799;A0A1L7NY43;A0A1L1ZJP0;A0A1J0QNY7;A0A1J0QL53;A0A1J0PNZ2;A0A1I9S095;A0A1B1PEN9;A0A1B0W3A7;A0A1B0W1P0;A0A1B0W0T5;A0A1B0VYS2;A0A143G082;A0A143FZ56;A0A0R6NEC0;A0A0P0C1B5;A0A0N6YNR7;A0A0D4WSL8;A0A0D4WR75;A0A0D4WQL7;A0A0D3MLN1;A0A0B5E697;A0A097Q0T5;A0A097PWY7;A0A097PWR7;A0A068IXK4;A0A068BY99;A0A059SAH5;A0A059S8A4;A0A059S2S6;A0A059S242;A0A059RZV1;A0A059RX67;A0A059RVU8;A0A059RUP9;A0A059RTZ6;A0A059RSL1;A0A059RRR2;A0A059RRG1;A0A059RR09;A0A059RQT0;A0A059RQQ2;A0A059RQI1;A0A059RQ10;A0A059RPV8;A0A059RP05;A0A059RNV8;A0A059RNF8;A0A059RMK0;A0A059RLH3;A0A059RKX5;A0A059RKP1;A0A059RJF0;A0A059RIZ2;A0A059RIQ8;A0A059RI85;A0A059RI53;A0A059RHY7;A0A059RHR2;A0A059RFY4;A0A059R1T0;A0A059QVH0;A0A059QTW9;A0A059QS59;A0A059QQA7;A0A059QPY9;A0A059QPU3;A0A059QPT6;A0A059QPR4;A0A059QPE9;A0A059QPE7;A0A059QLX8;A0A059QI72;A0A023QZ25;A0A1B0W1E4;A0A059RUZ1;H9STE0;P00403;B2YKU2;V9J3C6;V9J128;A6YW54;A0A059RIK5 A0A0E3JSF1 142 151 cox2;COX2;COII;MT-CO2 Cytochrome c oxidase subunit 2 yes no 2 0.00016942 93.162 4 2 0.70853 0.95506 20.306 6 Median 0.64995 0.88585 8.6186 4 0 Median 0.81774 1.2986 0.80779 2 0 Median 242890000 145700000 97192000 168210000 103620000 64587000 74678000 42074000 32605000 13420 437 13774 48809;48810;48811;48812;48813;48814 73596;73597;73598;73599;73600;73601;73602;73603;73604;73605;73606;73607 73607 12 VVLPTFILER MHLLSQVRLGMDLTKVVLPTFILERRSLLE MDLTKVVLPTFILERRSLLEMYADFFAHPD K V V E R R 0 1 0 0 0 0 1 0 0 1 2 0 0 1 1 0 1 0 0 2 0 0 10 0 1185.7121 B7Z4Q6;B1AKJ6;Q96SU4;B3KW33 B7Z4Q6 310 319 OSBPL9 Oxysterol-binding protein;Oxysterol-binding protein-related protein 9 yes no 2 0.022111 74.92 1 0.28658 0.3795 NaN 1 Median 0.28658 0.3795 NaN 1 0 Median NaN NaN NaN 0 0 Median 885040 577730 307310 885040 577730 307310 0 0 0 13421 673 13775 48815 73608 73608 1 VVLPYLVPK FALDGLKQVMAIKSRVVLPYLVPKLTTPPV MAIKSRVVLPYLVPKLTTPPVNTRVLAFLS R V V P K L 0 0 0 0 0 0 0 0 0 0 2 1 0 0 2 0 0 0 1 3 0 0 9 0 1026.6478 E1NZA1;Q92616;A0A024RBS1 E1NZA1 2075 2083 PRIC295;GCN1L1 Translational activator GCN1 yes no 2 0.02647 47.849 1 2 0.38499 0.47013 NaN 1 Median 0.38499 0.47013 NaN 1 0 Median NaN NaN NaN 0 0 Median 11062000 2482900 8579100 3709500 2482900 1226700 7352400 0 7352400 13422 1000 13776 48816;48817;48818 73609;73610;73611 73609 3 VVLSESVQVEK RRKLAALEKAEVKEKVVLSESVQVEKGDTE VKEKVVLSESVQVEKGDTEQEIQRLKSSLE K V V E K G 0 0 0 0 0 1 2 0 0 0 1 1 0 0 0 2 0 0 0 4 0 0 11 0 1215.6711 K7EQ71;K7EKI8;O60437 K7EQ71 920 930 PPL Periplakin yes no 2 0.043922 63.419 1 0.75471 0.9622 NaN 1 Median 0.75471 0.9622 NaN 1 0 Median NaN NaN NaN 0 0 Median 29436000 15094000 14342000 29436000 15094000 14342000 0 0 0 13423 1149 13777 48819 73612 73612 1 VVLSVSSGGQHTVLLVK AWSPVEMMGKQLENRVVLSVSSGGQHTVLL LSVSSGGQHTVLLVKDKEQS__________ R V V V K D 0 0 0 0 0 1 0 2 1 0 3 1 0 0 0 3 1 0 0 5 0 0 17 0 1722.004 Q5T081;A0A0S2Z3I4;A0A0S2Z404;P18754 Q5T081 400 416 RCC1 Regulator of chromosome condensation yes no 2;3 4.88E-08 119.88 3 2 1.0164 1.2613 20.266 3 Plateau 0.94713 1.1753 9.9788 2 0 Median 0.54018 0.84579 NaN 1 0 Median 149590000 91271000 58318000 85939000 39420000 46519000 63650000 51851000 11799000 13424 453 13778 48820;48821;48822;48823;48824 73613;73614;73615;73616;73617;73618 73618 6 VVLVLAGR ______________________________ KFMKPGKVVLVLAGRYSGRKAVIVKNIDDG K V V G R Y 1 1 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 3 0 0 8 0 825.54362 E4W6B6;B2R4D8;A0A024R1V4;P61353;K7ERY7 E4W6B6 10 17 RPL27 60S ribosomal protein L27 yes no 2 0.00012528 137.44 5 2 0.78817 1.0869 23.371 6 Median 0.8038 1.1031 3.1347 4 0 Median 0.44061 0.7083 0.69559 2 0 Median 1950800000 1084800000 866010000 1857900000 1018700000 839190000 92901000 66090000 26811000 13425 72 13779 48825;48826;48827;48828;48829;48830;48831 73619;73620;73621;73622;73623;73624;73625;73626;73627;73628;73629;73630;73631;73632;73633;73634;73635;73636 73631 18 VVNAVLTQIDQIK RNACRAGTEPSDAIRVVNAVLTQIDQIKRH IRVVNAVLTQIDQIKRHSNVVILTTSNITE R V V I K R 1 0 1 1 0 2 0 0 0 2 1 1 0 0 0 0 1 0 0 3 0 0 13 0 1439.8348 Q15645 Q15645 276 288 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 2 1.6956E-32 206.49 4 2 0.39659 0.49206 158.84 6 Median 0.36135 0.45623 12.611 4 0 Median 6.339 9.6068 41.168 2 0 Median 75141000 37108000 38033000 47856000 33938000 13918000 27284000 3170000 24114000 13426 1514 13780 48832;48833;48834;48835;48836;48837 73637;73638;73639;73640;73641;73642;73643;73644;73645;73646;73647;73648 73640 12 VVNIVPVIAK SLRPLDIEFMKRLSKVVNIVPVIAKADTLT KRLSKVVNIVPVIAKADTLTLEERVHFKQR K V V A K A 1 0 1 0 0 0 0 0 0 2 0 1 0 0 1 0 0 0 0 4 0 0 10 0 1050.6801 A0A0S2Z5W9;A0A024R8Q0;A0A0S2Z5A5;A0A024R8V0;Q9UHD8;K7EK18;K7EL40 A0A0S2Z5W9 203 212 SEPT9 Septin-9 yes no 2 0.018784 82.241 2 0.97825 1.2443 NaN 1 Median 0.97825 1.2443 NaN 1 0 Median NaN NaN NaN 0 0 Median 6934900 4237000 2697900 6934900 4237000 2697900 0 0 0 13427 202 13781 48838;48839 73649;73650 73650 2 VVNLAVDK SCRKAGSIMREGRDRVVNLAVDKTGRILAC MREGRDRVVNLAVDKTGRILACHGTDSVLE R V V D K T 1 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 3 0 0 8 0 856.50182 Q5TDG3;Q9UNX4 Q5TDG3 282 289 WDR3 WD repeat-containing protein 3 yes no 2 0.0081506 89.752 3 2 0.75005 1.0243 9.4454 5 Median 0.75916 0.96464 4.8718 3 0 Median 0.72181 1.1394 2.6943 2 0 Median 159770000 87929000 71840000 96264000 50548000 45716000 63505000 37380000 26124000 13428 1576 13782 48840;48841;48842;48843;48844 73651;73652;73653;73654;73655;73656 73655 6 VVNLGVLAQK RYAAPEQNNDPQQSKVVNLGVLAQKSDFCL PQQSKVVNLGVLAQKSDFCLKLEEGLVNNK K V V Q K S 1 0 1 0 0 1 0 1 0 0 2 1 0 0 0 0 0 0 0 3 0 0 10 0 1039.639 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 759 768 WDR36 WD repeat-containing protein 36 yes no 2 9.7339E-06 109.86 5 2 0.85463 1.1481 9.0379 6 Median 0.92458 1.1751 11.615 4 0 Median 0.74074 1.126 0.012127 2 0 Median 171570000 91466000 80100000 128270000 67155000 61111000 43301000 24312000 18990000 13429 404 13783 48845;48846;48847;48848;48849;48850;48851 73657;73658;73659;73660;73661;73662;73663;73664;73665;73666 73660 10 VVNPLFEK VAPAPAVVKKQEAKKVVNPLFEKRPKNFGI KKQEAKKVVNPLFEKRPKNFGIGQDIQPKR K V V E K R 0 0 1 0 0 0 1 0 0 0 1 1 0 1 1 0 0 0 0 2 0 0 8 0 944.53312 P62424;Q5T8U3 P62424 27 34 RPL7A 60S ribosomal protein L7a yes no 2 0.0062842 104.75 3 2 0.63615 0.91835 8.3319 4 Median 0.75984 0.99393 3.0751 2 0 Median 0.54163 0.86334 0.62375 2 0 Median 468810000 262120000 206690000 327000000 173220000 153780000 141810000 88905000 52905000 13430 1411 13784 48852;48853;48854;48855;48856 73667;73668;73669;73670;73671;73672;73673;73674;73675 73671 9 VVPINTPTAAVDQTLFPGK GFGLCAMANGEGRVKVVPINTPTAAVDQTL NTPTAAVDQTLFPGKVHSLSWALRGYEELL K V V G K V 2 0 1 1 0 1 0 1 0 1 1 1 0 1 3 0 3 0 0 3 0 0 19 0 1967.0728 A0A087X295;Q9NNW5;Q8NDH0;E9PDU5;B4E256;B4DK45 A0A087X295 449 467 WDR6;DKFZp434F1720 WD repeat-containing protein 6 yes no 2 5.9405E-11 123.95 3 0.5248 0.68824 5.4166 3 Median 0.5248 0.68824 5.4166 3 0 Median NaN NaN NaN 0 0 Median 16126000 10539000 5586900 16126000 10539000 5586900 0 0 0 13431 376 13785 48857;48858;48859 73676;73677;73678 73677 3 VVQLHEYSEELEK RVIVGGSSEYKINNKVVQLHEYSEELEKLG NKVVQLHEYSEELEKLGILIKARNFLVFQG K V V E K L 0 0 0 0 0 1 4 0 1 0 2 1 0 0 0 1 0 0 1 2 0 0 13 0 1601.7937 Q14683;G8JLG1;Q6P2R1;Q6MZR8;A8K7A6;B7Z709;Q68EN4;H0Y7K8;Q5H934;Q7Z4C6 Q14683 111 123 SMC1A;DKFZp686L19178 Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2;3 0.0002605 124.21 3 2 0.7957 1.1288 9.8414 2 Median NaN NaN NaN 0 0 Median 0.7957 1.1288 9.8414 2 0 Median 13550000 9316000 4234400 3923300 3923300 0 9627100 5392700 4234400 13432 1492 13786 48860;48861;48862;48863;48864 73679;73680;73681;73682;73683;73684;73685 73680 7 VVQMLGSLGGQINK LSSNEAISLEEIRIRVVQMLGSLGGQINKN RVVQMLGSLGGQINKNLLTVTSSDEMMKSY R V V N K N 0 0 1 0 0 2 0 3 0 1 2 1 1 0 0 1 0 0 0 2 0 0 14 0 1442.7915 P78527;B4DL41 P78527 855 868 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.030736 40.154 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2888300 2888300 0 0 0 0 2888300 2888300 0 13433 1427 13787 48865 73686 73686 1 VVQNDAYTAPALPSSIR SSSKLSMSKALPLTKVVQNDAYTAPALPSS QNDAYTAPALPSSIRTKALTNMSRTLVNKE K V V I R T 3 1 1 1 0 1 0 0 0 1 1 0 0 0 2 2 1 0 1 2 0 0 17 0 1800.937 Q96DI9;F6VRR5;B4E0L0;Q9BY77;B4DMM2;F8WCX5;Q659C6 Q96DI9 226 242 POLDIP3;DKFZp434G0310 Polymerase delta-interacting protein 3 no no 2 2.0213E-13 139.78 3 0.82778 1.1427 2.9233 3 Median 0.82778 1.1427 2.9233 3 0 Median NaN NaN NaN 0 0 Median 12808000 6974500 5833300 12808000 6974500 5833300 0 0 0 13434 885 13788 48866;48867;48868 73687;73688;73689;73690 73687 4 VVQVSAGDSHTAALTDDGR EGSEMVPGKVELQEKVVQVSAGDSHTAALT SAGDSHTAALTDDGRVFLWGSFRDNNGVIG K V V G R V 3 1 0 3 0 1 0 2 1 0 1 0 0 0 0 2 2 0 0 3 0 0 19 0 1897.913 Q5T081;A0A0S2Z3I4;A0A0S2Z404;P18754;C9JW69;C9JRH2;C9JMJ4;C9J3R0;C9JQZ4 Q5T081 121 139 RCC1 Regulator of chromosome condensation yes no 2;3 1.4681E-59 213 9 4 0.7689 1.0335 23.433 10 Median 0.83672 1.1503 9.7358 6 0 Median 0.4742 0.76086 5.2246 4 0 Median 414140000 244500000 169640000 266380000 142730000 123660000 147760000 101770000 45987000 13435 453 13789 48869;48870;48871;48872;48873;48874;48875;48876;48877;48878;48879;48880;48881 73691;73692;73693;73694;73695;73696;73697;73698;73699;73700;73701;73702;73703;73704;73705;73706;73707;73708;73709;73710 73695 20 VVQVYR VQVVRGHYKGQQIGKVVQVYRKKYVIYIER HYKGQQIGKVVQVYRKKYVIYIERVQREKA K V V Y R K 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 6 0 762.43882 Q9UNX3;E5RIT6;J3KS10;H7C1F9;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;Q6IBH6;P61254;J3KTJ8;A0A024RBF6 Q9UNX3 70 75 RPL26L1;RPL26;RALGAPA2;hCG_26523 60S ribosomal protein L26-like 1;60S ribosomal protein L26 no no 2 0.023313 123.53 4 1 0.78142 1.0516 34.462 5 Median 0.79274 1.0834 5.0547 4 0 Median 0.31904 0.50569 NaN 1 0 Median 620960000 348260000 272700000 577150000 316220000 260930000 43812000 32044000 11768000 13436 1797;1142 13790 48882;48883;48884;48885;48886 73711;73712;73713;73714;73715;73716 73711 6 VVSEDFLQDVSASTK KMNKKMEEVKEANIRVVSEDFLQDVSASTK VVSEDFLQDVSASTKSLQELFLAHILSPWG R V V T K S 1 0 0 2 0 1 1 0 0 0 1 1 0 1 0 3 1 0 0 3 0 0 15 0 1623.7992 A0A024R3T8;P09874;B4E0E1;B2R5W3 A0A024R3T8 453 467 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 1.3968E-62 244.73 6 2 1.1121 1.4727 31.718 6 Median 1.1482 1.5042 7.3943 4 0 Median 0.54949 0.8645 19.735 2 0 Median 1888400000 982320000 906100000 986980000 453590000 533400000 901440000 528730000 372710000 13437 107 13791 48887;48888;48889;48890;48891;48892;48893;48894 73717;73718;73719;73720;73721;73722;73723;73724;73725;73726;73727;73728;73729;73730;73731;73732 73718 16 VVSHSGSAGLSQVR PASSQTAPSSQAAARVVSHSGSAGLSQVRV RVVSHSGSAGLSQVRVVAQPSLPAVPQQSG R V V V R V 1 1 0 0 0 1 0 2 1 0 1 0 0 0 0 4 0 0 0 3 0 0 14 0 1382.7266 A0A024R3K9;A0A024R3N2;Q6P4R8;E9PQ59;B4DSL1 A0A024R3K9 793 806 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2 0.0091737 84.31 1 1 0.77901 1.0224 NaN 1 Median NaN NaN NaN 0 0 Median 0.77901 1.0224 NaN 1 0 Median 4172200 2952600 1219600 1030900 1030900 0 3141300 1921700 1219600 13438 101 13792 48895;48896 73733;73734 73733 2 VVSLEAELQDISSQESK QLEEKDMDIAGFTQKVVSLEAELQDISSQE SLEAELQDISSQESKDEASLAKVKKQLRDL K V V S K D 1 0 0 1 0 2 3 0 0 1 2 1 0 0 0 4 0 0 0 2 0 0 17 0 1860.9317 A0A0D9SFK2;A0A024QZ63;Q92614;B4DYM1;B4DZ32 A0A0D9SFK2 1515 1531 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 2 0.00085338 56.087 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2189200 2189200 0 2189200 2189200 0 0 0 0 13439 6 13793 48897 73735 73735 1 VVSLEAELQDISSQESKDEASLAK QLEEKDMDIAGFTQKVVSLEAELQDISSQE DISSQESKDEASLAKVKKQLRDLEAKVKDQ K V V A K V 3 0 0 2 0 2 4 0 0 1 3 2 0 0 0 5 0 0 0 2 0 0 24 1 2575.2865 A0A0D9SFK2;A0A024QZ63;Q92614;B4DYM1;B4DZ32 A0A0D9SFK2 1515 1538 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 3 7.2519E-07 84.946 3 0.41866 0.51324 NaN 1 Median 0.41866 0.51324 NaN 1 0 Median NaN NaN NaN 0 0 Median 11353000 8602700 2750100 11353000 8602700 2750100 0 0 0 13440 6 13794 48898;48899;48900 73736;73737;73738 73736 3 VVSLSEYR ISAIDLINIESFSSRVVSLSEYRQSLHTYL IESFSSRVVSLSEYRQSLHTYLRSKMSQVA R V V Y R Q 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 2 0 0 1 2 0 0 8 0 951.50255 A8K9K6;O00567;A0PJ92;H0YDU4;H0Y653 A8K9K6 271 278 NOP56 Nucleolar protein 56 yes no 2 0.0005526 168.45 3 2 0.5841 0.88298 7.4138 4 Median 0.68041 0.9441 2.7838 2 0 Median 0.51108 0.83358 1.4587 2 0 Median 439620000 253310000 186310000 276820000 146360000 130460000 162800000 106960000 55847000 13441 647 13795 48901;48902;48903;48904;48905 73739;73740;73741;73742;73743;73744;73745 73739 7 VVSQYHELVVQAR DNVVKKVQAAQSEAKVVSQYHELVVQARDD AKVVSQYHELVVQARDDFKRELDSITPEVL K V V A R D 1 1 0 0 0 2 1 0 1 0 1 0 0 0 0 1 0 0 1 4 0 0 13 0 1526.8205 B4DS66;C9J406;H7C463;Q16891;B9A067;B4DQY2;B4DKR1 Q16891 354 366 IMMT MICOS complex subunit MIC60 no no 2;3 0.0002605 124.21 5 0.46611 0.62367 3.4879 2 Median 0.46611 0.62367 3.4879 2 0 Median NaN NaN NaN 0 0 Median 47891000 38757000 9133400 47891000 38757000 9133400 0 0 0 13442 1524;854 13796 48906;48907;48908;48909;48910 73746;73747;73748;73749;73750 73747 5 VVSSSIVDK LARAVASQLDCNFLKVVSSSIVDKYIGESA DCNFLKVVSSSIVDKYIGESARLIREMFNY K V V D K Y 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 3 0 0 0 3 0 0 9 0 932.51786 V9HW24;A0A087X2I1;P62333;H0YJC0;H0YJS8 V9HW24 198 206 HEL-S-73;PSMC6 26S protease regulatory subunit 10B yes no 2 0.046449 40.352 1 0.47824 0.60747 NaN 1 Median 0.47824 0.60747 NaN 1 0 Median NaN NaN NaN 0 0 Median 12708000 9156200 3551900 12708000 9156200 3551900 0 0 0 13443 379 13797 48911 73751 73751 1 VVSVQLGDGTR LLKLSPATPTSEGPKVVSVQLGDGTRLKGT EGPKVVSVQLGDGTRLKGTVLPVATIQNAS K V V T R L 0 1 0 1 0 1 0 2 0 0 1 0 0 0 0 1 1 0 0 3 0 0 11 0 1129.6091 Q8N1G0;F8WCX2 Q8N1G0 385 395 ZNF687 Zinc finger protein 687 yes no 2 0.002073 64.654 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13444 1634 13798 48912 73752 73752 1 VVTDLISLIR HCTAFWLLVDLNRCRVVTDLISLIRQRFGF LNRCRVVTDLISLIRQRFGFSSGAFLGLYL R V V I R Q 0 1 0 1 0 0 0 0 0 2 2 0 0 0 0 1 1 0 0 2 0 0 10 0 1127.6914 P38432 P38432 37 46 COIL Coilin yes yes 2 7.8782E-08 150.36 4 2 0.59438 0.79197 10.366 5 Median 0.60602 0.81432 6.7918 4 0 Median 0.46908 0.66893 NaN 1 0 Median 72395000 48216000 24179000 56590000 35550000 21040000 15805000 12666000 3139300 13445 1328 13799 48913;48914;48915;48916;48917;48918 73753;73754;73755;73756;73757;73758;73759;73760;73761;73762;73763 73758 11 VVTDTDETELAR IEEKRGVFNVQMEPKVVTDTDETELARQME EPKVVTDTDETELARQMERLERENAEVDGD K V V A R Q 1 1 0 2 0 0 2 0 0 0 1 0 0 0 0 0 3 0 0 2 0 0 12 0 1347.6518 Q53XC0;P05198 Q53XC0 277 288 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 2 1.5822E-07 136.96 3 1 0.51645 0.68551 NaN 1 Median 0.51645 0.68551 NaN 1 0 Median NaN NaN NaN 0 0 Median 21638000 17564000 4073700 18330000 14256000 4073700 3307500 3307500 0 13446 1235 13800 48919;48920;48921;48922 73764;73765;73766;73767 73764 4 VVTGVANALAHR FGSEFSPELQASFQKVVTGVANALAHRYH_ FQKVVTGVANALAHRYH_____________ K V V H R Y 3 1 1 0 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 3 0 0 12 0 1206.6833 CON__Q3SX09 CON__Q3SX09 188 199 yes yes 2;3 0.00083939 114.89 5 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 145050000 145050000 0 109340000 109340000 0 35713000 35713000 0 + 13447 969 13801 48923;48924;48925;48926;48927;48928;48929;48930 73768;73769;73770;73771;73772;73773;73774;73775 73770 8 VVTKPGHIINPIK TWNTQRAFQKLTTPKVVTKPGHIINPIKAE PKVVTKPGHIINPIKAEDVGYRSSSRSDLS K V V I K A 0 0 1 0 0 0 0 1 1 3 0 2 0 0 2 0 1 0 0 2 0 0 13 1 1414.866 Q9BVJ6;B4E343 Q9BVJ6 721 733 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 3 0.00010426 107.34 3 2 0.89057 1.1722 16.915 5 Median 1.1842 1.4743 19.59 3 0 Median 0.72767 1.1418 3.7134 2 0 Median 73552000 36674000 36879000 54966000 26437000 28529000 18586000 10236000 8349800 13448 1719 13802 48931;48932;48933;48934;48935 73776;73777;73778;73779;73780;73781 73777 6 VVTLQGQIIEQSGTMTGGGSK DQATRVAYQKDRRWRVVTLQGQIIEQSGTM QIIEQSGTMTGGGSKVMKGRMGSSLVIEIS R V V S K V 0 0 0 0 0 3 1 5 0 2 1 1 1 0 0 2 3 0 0 2 0 0 21 0 2090.0678 Q9NTJ3;E9PD53;B3KXX5 Q9NTJ3 737 757 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 5.8267E-64 204.67 6 2 0.71364 0.93446 7.3632 6 Median 0.73953 0.95411 8.5294 4 0 Median 0.57512 0.90931 3.0501 2 0 Median 287870000 184000000 103870000 21852000 12281000 9571000 266020000 171720000 94295000 13449 1760 13803;13804 48936;48937;48938;48939;48940;48941;48942;48943 73782;73783;73784;73785;73786;73787;73788;73789;73790;73791;73792;73793;73794;73795;73796 73785 815 15 VVTQNICQYR GIRLSAEQAKQLVSRVVTQNICQYRSLQYS QLVSRVVTQNICQYRSLQYSRQEGLDGGLP R V V Y R S 0 1 1 0 1 2 0 0 0 1 0 0 0 0 0 0 1 0 1 2 0 0 10 0 1279.6343 A0A087X2B6;E2PSM9;G3V119;H0YB24;B3KTJ9;Q8N163 A0A087X2B6 211 220 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 2 0.01713 70.525 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1867600 1867600 0 1867600 1867600 0 0 0 0 13450 377 13805 48944 73797 73797 1 VVTSEDQVQEGTK AYKQENEMLSSRDQRVVTSEDQVQEGTKVL QRVVTSEDQVQEGTKVLKLKTKMADKENMK R V V T K V 0 0 0 1 0 2 2 1 0 0 0 1 0 0 0 1 2 0 0 3 0 0 13 0 1418.6889 B2RMQ4;Q8WWK9;C9J7Y4 B2RMQ4 57 69 CKAP2 Cytoskeleton-associated protein 2 yes no 2 1.3577E-25 199.33 4 2 1.1045 1.3925 25.198 6 Median 1.2052 1.526 8.8332 4 0 Median 0.62796 0.92237 5.6042 2 0 Median 46004000 22290000 23714000 32784000 14483000 18301000 13220000 7806800 5412900 13451 745 13806 48945;48946;48947;48948;48949;48950 73798;73799;73800;73801;73802;73803;73804;73805;73806;73807 73800 10 VVTTCADCNLR KSIASAYFSPLTGNRVVTTCADCNLRIFDS TGNRVVTTCADCNLRIFDSSCISSKIPLLT R V V L R I 1 1 1 1 2 0 0 0 0 0 1 0 0 0 0 0 2 0 0 2 0 0 11 0 1307.5962 A0A0C4DFX7;Q9H967 A0A0C4DFX7 447 457 WDR76 WD repeat-containing protein 76 yes no 2 0.00080255 76.465 2 0.82952 1.1444 NaN 1 Median 0.82952 1.1444 NaN 1 0 Median NaN NaN NaN 0 0 Median 4719100 2747100 1972000 4719100 2747100 1972000 0 0 0 13452 421 13807 48951;48952 73808;73809;73810 73809 3 VVVDPVVTEQPSTSSAAK GKTESSSVVRTRSNRVVVDPVVTEQPSTSS DPVVTEQPSTSSAAKTFITKANASAIPGKT R V V A K T 2 0 0 1 0 1 1 0 0 0 0 1 0 0 2 3 2 0 0 5 0 0 18 0 1812.9469 Q8WWQ0;Q9NWP3 Q8WWQ0 1511 1528 PHIP PH-interacting protein yes no 2 4.6192E-40 187.74 4 2 0.90188 1.1739 4.4881 6 Median 0.91867 1.1478 2.5508 4 0 Median 0.78694 1.2443 2.0536 2 0 Median 409350000 228090000 181260000 151530000 80214000 71315000 257820000 147880000 109940000 13453 1668 13808 48953;48954;48955;48956;48957;48958 73811;73812;73813;73814;73815;73816;73817;73818;73819;73820;73821;73822;73823 73813 13 VVVEPPEGEEK IECTQAPAPASEDEKVVVEPPEGEEKVEKA EDEKVVVEPPEGEEKVEKAEVKERTEEPME K V V E K V 0 0 0 0 0 0 4 1 0 0 0 1 0 0 2 0 0 0 0 3 0 0 11 0 1210.6081 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 1581 1591 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.0013879 103.88 4 2 1.1361 1.7853 32.536 6 Linear 0.7958 0.99531 3.2279 4 0 Median 1.1626 1.8593 4.7798 2 0 Median 182630000 92440000 90193000 85970000 49885000 36085000 96663000 42556000 54107000 13454 428 13809 48959;48960;48961;48962;48963;48964 73824;73825;73826;73827;73828;73829;73830;73831;73832;73833;73834;73835 73830 11 VVVITK QFGVGFYSAYLVAEKVVVITKHNDDEQYAW YSAYLVAEKVVVITKHNDDEQYAWESSAGG K V V T K H 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 3 0 0 6 0 657.44251 A0A024RD80;P08238;B4DGL0;Q6PK50;O14942 A0A024RD80 143 148 HSP90AB1 Heat shock protein HSP 90-beta yes no 1;2 0.011635 92.692 2 0.452 0.5672 6.707 2 Median 0.452 0.5672 6.707 2 0 Median NaN NaN NaN 0 0 Median 60329000 41292000 19037000 60329000 41292000 19037000 0 0 0 13455 312 13810 48965;48966 73836;73837 73837 1 VVVLNCEPSK IPDPERVFYTGQVVKVVVLNCEPSKERMLL GQVVKVVVLNCEPSKERMLLSFKLSSDPEP K V V S K E 0 0 1 0 1 0 1 0 0 0 1 1 0 0 1 1 0 0 0 3 0 0 10 0 1143.5958 Q14690;B4DH82;B4DES7 Q14690 594 603 PDCD11 Protein RRP5 homolog yes no 2 0.00051281 84.213 2 1 1.0092 1.2778 10.705 2 Median 1.0092 1.2778 10.705 2 0 Median NaN NaN NaN 0 0 Median 58779000 31728000 27051000 56670000 29619000 27051000 2109200 2109200 0 13456 1494 13811 48967;48968;48969 73838;73839;73840;73841 73840 4 VVVPELSAGVASR SEIATERDLVAWSRRVVVPELSAGVASRQE RRVVVPELSAGVASRQEEWRTAKGEEEIKT R V V S R Q 2 1 0 0 0 0 1 1 0 0 1 0 0 0 1 2 0 0 0 4 0 0 13 0 1282.7245 Q8WWQ0 Q8WWQ0 723 735 PHIP PH-interacting protein yes yes 2 1.4124E-05 93.258 3 2 0.83836 1.204 5.4473 5 Median 0.84455 1.1462 3.906 3 0 Median 0.81241 1.2559 1.6917 2 0 Median 88685000 44404000 44281000 43385000 20714000 22671000 45300000 23690000 21610000 13457 1668 13812 48970;48971;48972;48973;48974 73842;73843;73844;73845;73846;73847;73848;73849;73850 73844 9 VVVPEVPLGIFR SQIATERDLQAWKRRVVVPEVPLGIFRKLE KRRVVVPEVPLGIFRKLEDFRLEKGEEERN R V V F R K 0 1 0 0 0 0 1 1 0 1 1 0 0 1 2 0 0 0 0 4 0 0 12 0 1323.7915 Q9NSI6;H7BZR9;Q5R2U6;H0Y463 Q9NSI6 741 752 BRWD1;WDR9 Bromodomain and WD repeat-containing protein 1 yes no 2 0.00045819 73.985 1 0.76786 1.0316 NaN 1 Median 0.76786 1.0316 NaN 1 0 Median NaN NaN NaN 0 0 Median 15014000 8048100 6966000 15014000 8048100 6966000 0 0 0 13458 1758 13813 48975 73851 73851 1 VVVPIYCTSFLAVEEDK SQRKQARELLAALQKVVVPIYCTSFLAVEE VPIYCTSFLAVEEDKQQKIARLLQLWEKNG K V V D K Q 1 0 0 1 1 0 2 0 0 1 1 1 0 1 1 1 1 0 1 4 0 0 17 0 1967.9914 J3QK89;Q8IWX8 J3QK89 251 267 CHERP Calcium homeostasis endoplasmic reticulum protein yes no 2 0.00016504 54.524 1 0.34654 0.43687 NaN 1 Median 0.34654 0.43687 NaN 1 0 Median NaN NaN NaN 0 0 Median 2349000 1582500 766520 2349000 1582500 766520 0 0 0 13459 1140 13814 48976 73852 73852 1 VVVQVLAEEPEAVLK EDAFRYMAQGKHIGKVVVQVLAEEPEAVLK VVVQVLAEEPEAVLKGAKPKLMSAISKTFC K V V L K G 2 0 0 0 0 1 3 0 0 0 2 1 0 0 1 0 0 0 0 5 0 0 15 0 1621.9291 A0A0U1RQF0;P49327 A0A0U1RQF0 1850 1864 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 1.2165E-18 131.43 4 0.78757 0.98728 7.1292 4 Median 0.78757 0.98728 7.1292 4 0 Median NaN NaN NaN 0 0 Median 46808000 25593000 21216000 46808000 25593000 21216000 0 0 0 13460 486 13815 48977;48978;48979;48980 73853;73854;73855;73856;73857;73858;73859 73856 7 VVVTDVTSNFLTVTIK PEEESWSPSLTNLEKVVVTDVTSNFLTVTI VVTDVTSNFLTVTIKESNTDQGFFKEKR__ K V V I K E 0 0 1 1 0 0 0 0 0 1 1 1 0 1 0 1 4 0 0 5 0 0 16 0 1734.9768 Q9HC52 Q9HC52 361 376 CBX8 Chromobox protein homolog 8 yes yes 2 1.7743E-06 109.15 4 1 0.71441 0.90251 25.903 5 Median 0.72909 0.93689 9.3445 4 0 Median 0.38985 0.53729 NaN 1 0 Median 31823000 17536000 14287000 26839000 14519000 12319000 4984600 3016900 1967700 13461 1750 13816 48981;48982;48983;48984;48985 73860;73861;73862;73863;73864;73865;73866;73867;73868 73864 9 VVVVTGANTGIGK LSSGVCTSTVQLPGKVVVVTGANTGIGKET GKVVVVTGANTGIGKETAKELAQRGARVYL K V V G K E 1 0 1 0 0 0 0 3 0 1 0 1 0 0 0 0 2 0 0 4 0 0 13 0 1213.703 A0A0S2Z583;Q8TC12;G3V2G6;A0A0S2Z575;G3V234 A0A0S2Z583 43 55 RDH11 Retinol dehydrogenase 11 yes no 2 0.00043865 91.701 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3258800 3258800 0 3258800 3258800 0 0 0 0 13462 476 13817 48986;48987 73869;73870 73870 2 VVYGGGAAEISCALAVSQEADK HDALCVIRNLIRDNRVVYGGGAAEISCALA AEISCALAVSQEADKCPTLEQYAMRAFADA R V V D K C 5 0 0 1 1 1 2 3 0 1 1 1 0 0 0 2 0 0 1 3 0 0 22 0 2194.0576 B4DE30;E7ENZ3;B7ZAR1;B4DDU6;B4DZT5;B4DXI1;E9PCA1;Q9BU08;V9HW37;P48643;B4DX08;B4DYC8;Q96GI1;Q9HB74 B4DE30 343 364 CCT5;HEL-S-69 T-complex protein 1 subunit epsilon yes no 2 0.0015178 54.898 2 0.37855 0.47282 2.5932 2 Median 0.37855 0.47282 2.5932 2 0 Median NaN NaN NaN 0 0 Median 7720300 5756600 1963700 7720300 5756600 1963700 0 0 0 13463 795 13818 48988;48989 73871;73872 73871 2 VVYIFGPPVK FLARLIPRMCHNVNRVVYIFGPPVKEPPTD HNVNRVVYIFGPPVKEPPTDVTPTFLTTGV R V V V K E 0 0 0 0 0 0 0 1 0 1 0 1 0 1 2 0 0 0 1 3 0 0 10 0 1117.6536 B4DUT7;A0A140VJK6;P49915;Q53F90 B4DUT7 509 518 GMPS GMP synthase [glutamine-hydrolyzing] yes no 2 0.036106 95.352 1 1 1.2427 1.5617 NaN 1 Median 1.2427 1.5617 NaN 1 0 Median NaN NaN NaN 0 0 Median 3200500 524970 2675500 1147900 524970 622920 2052600 0 2052600 13464 498 13819 48990;48991 73873;73874 73874 1 VWDPDNPLTDR EGESDNRNQQKMEMKVWDPDNPLTDRQIDQ MEMKVWDPDNPLTDRQIDQFLVVARAVGTF K V W D R Q 0 1 1 3 0 0 0 0 0 0 1 0 0 0 2 0 1 1 0 1 0 0 11 0 1326.6204 A0A024R534;O94776 A0A024R534 178 188 MTA2 Metastasis-associated protein MTA2 yes no 2 0.0040547 56.729 2 0.96631 1.3816 1.0382 2 Median NaN NaN NaN 0 0 Median 0.96631 1.3816 1.0382 2 0 Median 24018000 11786000 12232000 0 0 0 24018000 11786000 12232000 13465 133 13820 48992;48993 73875;73876 73875 2 VWDVESGSLK DAEEICSASWDHTIRVWDVESGSLKSTLTG DHTIRVWDVESGSLKSTLTGNKVFNCISYS R V W L K S 0 0 0 1 0 0 1 1 0 0 1 1 0 0 0 2 0 1 0 2 0 0 10 0 1118.5608 Q53T99;Q9GZL7;B4DRY7 Q53T99 282 291 WDR12 Ribosome biogenesis protein WDR12 yes no 2 0.00051281 84.213 2 0.61132 0.92216 7.5471 2 Median NaN NaN NaN 0 0 Median 0.61132 0.92216 7.5471 2 0 Median 33982000 20889000 13092000 0 0 0 33982000 20889000 13092000 13466 1543 13821 48994;48995 73877;73878;73879;73880 73879 4 VWLDPNETNEIANANSR QKRLASSVLRCGKKKVWLDPNETNEIANAN LDPNETNEIANANSRQQIRKLIKDGLIIRK K V W S R Q 2 1 4 1 0 0 2 0 0 1 1 0 0 0 1 1 1 1 0 1 0 0 17 0 1941.9181 J3QR09;J3KTE4;Q53G49;P84098;Q8IWR8;J3QL15 J3QR09 19 35 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 2 3.4653E-13 122.97 4 2 0.74865 1.0625 52.158 5 Median 0.91173 1.3062 18.456 3 0 Median 0.32093 0.51182 0.61986 2 0 Median 92319000 69672000 22647000 13259000 8268500 4990300 79061000 61403000 17657000 13467 1138 13822 48996;48997;48998;48999;49000;49001 73881;73882;73883;73884;73885;73886;73887;73888;73889;73890;73891;73892;73893;73894 73885 14 VYAEVNSLR ______________________________ AGSRARVYAEVNSLRSREYWDYEAHVPSWG R V Y L R S 1 1 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 1 2 0 0 9 0 1049.5506 P19784;H3BNI9 P19784 12 20 CSNK2A2 Casein kinase II subunit alpha yes no 2 0.024288 49.418 1 0.5744 0.78369 NaN 1 Median 0.5744 0.78369 NaN 1 0 Median NaN NaN NaN 0 0 Median 6507300 4301100 2206200 6507300 4301100 2206200 0 0 0 13468 1284 13823 49002 73895 73895 1 VYAILTHGIFSGPAISR ICHAADKLLSAGATRVYAILTHGIFSGPAI AILTHGIFSGPAISRINNACFEAVVVTNTI R V Y S R I 2 1 0 0 0 0 0 2 1 3 1 0 0 1 1 2 1 0 1 1 0 0 17 0 1800.9887 Q53FW2;P60891;A0A0B4J207;P21108;B1ALA9;B7ZB02;B2R860;A0A140VK41;P11908;H7C540 Q53FW2 244 260 PRPS1;PRPS1L1;PRPS2 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3;Ribose-phosphate pyrophosphokinase 2 no no 3 4.2328E-08 130.01 2 2 0.60236 0.81039 NaN 1 Median 0.60236 0.81039 NaN 1 0 Median NaN NaN NaN 0 0 Median 30390000 8103200 22287000 15443000 8103200 7339500 14947000 0 14947000 13469 1390;506 13824 49003;49004;49005;49006 73896;73897;73898;73899;73900;73901;73902 73900 7 VYASSGDGEVYVWDVNSR NGRVAASTFSSDSKKVYASSGDGEVYVWDV SSGDGEVYVWDVNSRKCLNRFVDEGSLYGL K V Y S R K 1 1 1 2 0 0 1 2 0 0 0 0 0 0 0 3 0 1 2 4 0 0 18 0 2001.9068 Q9Y5J1;B2RAX6;J3KSR7;J3QR85;J3QRG0 Q9Y5J1 397 414 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2 0.015186 28.779 2 0.75455 1.0885 9.4979 2 Median NaN NaN NaN 0 0 Median 0.75455 1.0885 9.4979 2 0 Median 14099000 6779600 7319800 0 0 0 14099000 6779600 7319800 13470 1830 13825 49007;49008 73903;73904 73903 2 VYATILNAGTNTDGFK GVVAVLLTKKSLARRVYATILNAGTNTDGF YATILNAGTNTDGFKEQGVTFPSGDIQEQL R V Y F K E 2 0 2 1 0 0 0 2 0 1 1 1 0 1 0 0 3 0 1 1 0 0 16 0 1683.8468 A0A0U1RQF0;P49327 A0A0U1RQF0 242 257 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00019835 91.093 2 0.68936 0.88154 NaN 1 Median 0.68936 0.88154 NaN 1 0 Median NaN NaN NaN 0 0 Median 4658800 2194200 2464600 4658800 2194200 2464600 0 0 0 13471 486 13826 49009;49010 73905;73906 73906 2 VYCGPSPSCLVQSSSLSNAHIDYTTK GELKSSTPAQLAFMRVYCGPSPSCLVQSSS QSSSLSNAHIDYTTKPAIIFRIAARNEKGY R V Y T K P 1 0 1 1 2 1 0 1 1 1 2 1 0 0 2 6 2 0 2 2 0 0 26 0 2870.3215 A6NEM2;P51610;H7C1C4 A6NEM2 1996 2021 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 3 3.1288E-13 115.36 3 0.6021 0.7646 35.928 2 Median 0.6021 0.7646 35.928 2 0 Median NaN NaN NaN 0 0 Median 29902000 15978000 13925000 29902000 15978000 13925000 0 0 0 13472 564 13827 49011;49012;49013 73907;73908;73909;73910;73911 73908 5 VYDPASPQR GSQKLVTCTGYHQVRVYDPASPQRRPVLET GYHQVRVYDPASPQRRPVLETTYGEYPLTA R V Y Q R R 1 1 0 1 0 1 0 0 0 0 0 0 0 0 2 1 0 0 1 1 0 0 9 0 1031.5036 Q6RFH5;E9PS41 Q6RFH5 209 217 WDR74 WD repeat-containing protein 74 yes no 2 0.00026191 123.72 4 2 0.67105 0.96326 5.488 4 Median 0.74479 0.99483 2.9465 2 0 Median 0.60779 0.92106 4.7228 2 0 Median 88509000 50100000 38410000 48571000 25714000 22857000 39939000 24385000 15553000 13473 1598 13828 49014;49015;49016;49017;49018;49019 73912;73913;73914;73915;73916;73917;73918;73919;73920 73912 9 VYEAVELLK DQYVKAASHLLSIHKVYEAVELLKSNHFYR LLSIHKVYEAVELLKSNHFYREAIAIAKAR K V Y L K S 1 0 0 0 0 0 2 0 0 0 2 1 0 0 0 0 0 0 1 2 0 0 9 0 1062.5961 B7ZLC9;Q8TEQ6 B7ZLC9 990 998 GEMIN5 Gem-associated protein 5 yes no 2 0.022575 63.419 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3009400 3009400 0 3009400 3009400 0 0 0 0 13474 924 13829 49020 73921 73921 1 VYENYPTYDLTER SANLEEVTMKQICKKVYENYPTYDLTERKD KKVYENYPTYDLTERKDFIKTTVKELIS__ K V Y E R K 0 1 1 1 0 0 2 0 0 0 1 0 0 0 1 0 2 0 3 1 0 0 13 0 1661.7573 B4DNW3;H0Y993;Q6MZJ9;P35659;B4DFG0 P35659 350 362 DEK;DKFZp686A24118 Protein DEK no no 2 2.1454E-16 169.21 4 2 0.72593 1.0014 10.701 6 Median 0.77645 1.0739 8.3436 4 0 Median 0.54654 0.90342 6.1854 2 0 Median 791140000 490420000 300720000 328400000 189770000 138630000 462730000 300640000 162090000 13475 1322;843 13830 49021;49022;49023;49024;49025;49026 73922;73923;73924;73925;73926;73927;73928;73929;73930;73931;73932;73933;73934;73935 73922 14 VYENYPTYDLTERK SANLEEVTMKQICKKVYENYPTYDLTERKD KVYENYPTYDLTERKDFIKTTVKELIS___ K V Y R K D 0 1 1 1 0 0 2 0 0 0 1 1 0 0 1 0 2 0 3 1 0 0 14 1 1789.8523 B4DNW3;H0Y993;Q6MZJ9;P35659;B4DFG0 P35659 350 363 DEK;DKFZp686A24118 Protein DEK no no 2;3 1.7328E-10 84.566 5 2 0.83333 1.0991 16.334 7 Median 0.88518 1.1715 8.5593 5 0 Median 0.50861 0.87374 5.0596 2 0 Median 310180000 171660000 138520000 229820000 117800000 112020000 80359000 53853000 26506000 13476 1322;843 13831 49027;49028;49029;49030;49031;49032;49033 73936;73937;73938;73939;73940;73941;73942;73943;73944;73945;73946 73939 11 VYFFGSGQPEK GGMFLATGSTDHIIRVYFFGSGQPEKISEL HIIRVYFFGSGQPEKISELEFHTDKVDSIQ R V Y E K I 0 0 0 0 0 1 1 2 0 0 0 1 0 2 1 1 0 0 1 1 0 0 11 0 1257.603 Q8WWQ0 Q8WWQ0 347 357 PHIP PH-interacting protein yes yes 2 0.00023901 94.309 2 2 0.91733 1.297 9.9224 4 Median 0.95297 1.2041 1.4332 2 0 Median 0.8882 1.4224 3.9654 2 0 Median 202020000 104220000 97806000 87490000 44146000 43344000 114530000 60070000 54461000 13477 1668 13832 49034;49035;49036;49037 73947;73948;73949;73950;73951;73952;73953 73951 7 VYFLPITPHYVTQVIR PNIATVQTSQGLADKVYFLPITPHYVTQVI YFLPITPHYVTQVIRNERPDGVLLTFGGQT K V Y I R N 0 1 0 0 0 1 0 0 1 2 1 0 0 1 2 0 2 0 2 3 0 0 16 0 1945.0826 Q53SY7;F8VPD4;P27708 Q53SY7 376 391 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 3 0.0095033 35.35 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6641100 6641100 0 6641100 6641100 0 0 0 0 13478 1060 13833 49038 73954 73954 1 VYLILEYAPLGTVYR PNILRLYGYFHDATRVYLILEYAPLGTVYR VYLILEYAPLGTVYRELQKLSKFDEQRTAT R V Y Y R E 1 1 0 0 0 0 1 1 0 1 3 0 0 0 1 0 1 0 3 2 0 0 15 0 1768.9764 O14965;Q5QPD4;B4DX16;A3KFJ0;B2R6Z3 O14965 206 220 AURKA Aurora kinase A yes no 2 5.7216E-05 101.39 3 0.78717 1.0834 NaN 1 Median 0.78717 1.0834 NaN 1 0 Median NaN NaN NaN 0 0 Median 6382000 2084900 4297200 6382000 2084900 4297200 0 0 0 13479 1172 13834 49039;49040;49041 73955;73956;73957 73955 3 VYLQNEYK LGAVYDVSHYNALLKVYLQNEYKFSPTDFL HYNALLKVYLQNEYKFSPTDFLAKMEEANI K V Y Y K F 0 0 1 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 2 1 0 0 8 0 1055.5288 E5KNY5;P42704;B4DSR0;B8ZZ38;A0A0C4DG06;C9JCA9 E5KNY5 171 178 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.026972 53.166 1 1 1.7311 2.2681 238.12 2 Median 0.33199 0.42112 NaN 1 0 Median 9.0268 12.216 NaN 1 0 Median 10086000 5390000 4695600 6395000 5024400 1370500 3690600 365560 3325000 13480 1001 13835 49042;49043 73958;73959 73959 2 VYNVTQHAVGIVVNK QKGMPHKCYHGKTGRVYNVTQHAVGIVVNK VYNVTQHAVGIVVNKQVKGKILAKRINVRI R V Y N K Q 1 0 2 0 0 1 0 1 1 1 0 1 0 0 0 0 1 0 1 5 0 0 15 0 1639.9046 Q6IAX2;P46778;G3V1B3;M0R181;Q59GK9 Q6IAX2 64 78 RPL21 60S ribosomal protein L21 yes no 2;3 3.2802E-50 197.36 10 4 0.72171 0.94512 5.3105 14 Median 0.73618 0.96496 5.9216 10 0 Median 0.57381 0.92097 2.1229 4 0 Median 2594900000 1543400000 1051500000 2243600000 1319000000 924590000 351340000 224400000 126940000 13481 1345 13836 49044;49045;49046;49047;49048;49049;49050;49051;49052;49053;49054;49055;49056;49057 73960;73961;73962;73963;73964;73965;73966;73967;73968;73969;73970;73971;73972;73973;73974;73975;73976;73977;73978;73979;73980;73981;73982;73983;73984;73985;73986;73987;73988;73989;73990;73991;73992;73993 73963 34 VYNYNHLMPTR KKKIAKRSKIKSFVKVYNYNHLMPTRYSVD SFVKVYNYNHLMPTRYSVDIPLDKTVVNKD K V Y T R Y 0 1 2 0 0 0 0 0 1 0 1 0 1 0 1 0 1 0 2 1 0 0 11 0 1406.6765 E4W6B6;B2R4D8;A0A024R1V4;P61353;K7ELC7;K7EQQ9 E4W6B6 74 84 RPL27 60S ribosomal protein L27 yes no 2;3 9.0836E-05 126.39 8 4 0.73686 0.96639 23.473 10 Median 0.77099 1.0499 20.375 6 0 Median 0.53322 0.76522 23.819 4 0 Median 221750000 134090000 87651000 127470000 68491000 58979000 94277000 65604000 28673000 13482 72 13837;13838 49058;49059;49060;49061;49062;49063;49064;49065;49066;49067;49068;49069 73994;73995;73996;73997;73998;73999;74000;74001;74002;74003;74004;74005;74006;74007 74005 42 14 VYRIEGDETSTEAATR RPSRADQFEYVMYGKVYRIEGDETSTEAAT YRIEGDETSTEAATRLSAYVSYGGLLMRLQ K V Y T R L 2 2 0 1 0 0 3 1 0 1 0 0 0 0 0 1 3 0 1 1 0 0 16 1 1796.8541 C9JLU1;P52434 C9JLU1 96 111 POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3 yes no 3 3.6309E-05 72.489 3 0.41462 0.57402 24.369 3 Median 0.41462 0.57402 24.369 3 0 Median NaN NaN NaN 0 0 Median 38758000 25321000 13437000 38758000 25321000 13437000 0 0 0 13483 940 13839 49070;49071;49072 74008;74009;74010;74011;74012 74010 5 VYSLDDIRR RIVDLHSRIEESIDRVYSLDDIRRYLLFAR EESIDRVYSLDDIRRYLLFARQFKPKISKE R V Y R R Y 0 2 0 2 0 0 0 0 0 1 1 0 0 0 0 1 0 0 1 1 0 0 9 1 1135.5986 Q4ZG57;Q14566 Q4ZG57 530 538 MCM6 DNA replication licensing factor MCM6 yes no 3 0.048584 52.937 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13484 1488 13840 49073 74013 74013 1 VYSLFLDESR RKRKGTEVQVDDIKRVYSLFLDESRSTQYM DDIKRVYSLFLDESRSTQYMKEYQDAFLFN R V Y S R S 0 1 0 1 0 0 1 0 0 0 2 0 0 1 0 2 0 0 1 1 0 0 10 0 1227.6136 Q9Y230;B3KNL2 Q9Y230 429 438 RUVBL2 RuvB-like 2 yes no 2 0.00056895 82.749 2 0.94688 1.3642 1.6275 2 Median NaN NaN NaN 0 0 Median 0.94688 1.3642 1.6275 2 0 Median 26090000 14892000 11198000 0 0 0 26090000 14892000 11198000 13485 1801 13841 49074;49075 74014;74015;74016 74015 3 VYSPHVLNLTLIDLPGITK TGTNKGISPVPINLRVYSPHVLNLTLIDLP HVLNLTLIDLPGITKVPVGDQPPDIEYQIK R V Y T K V 0 0 1 1 0 0 0 1 1 2 4 1 0 0 2 1 2 0 1 2 0 0 19 0 2092.1932 P50570;E5RIK2;Q59G96;B3KPF2;E5RHK8;Q9UQ16 P50570 124 142 DNM2;DNM3 Dynamin-2;Dynamin-3 yes no 3 2.3468E-05 94.313 1 0.29181 0.36853 NaN 1 Median 0.29181 0.36853 NaN 1 0 Median NaN NaN NaN 0 0 Median 4631800 3481100 1150700 4631800 3481100 1150700 0 0 0 13486 1358 13842 49076 74017 74017 1 VYSTALSSFLTK GPQAASCLDLNLVTRVYSTALSSFLTKRNS VTRVYSTALSSFLTKRNSPLTVPMFLSLFS R V Y T K R 1 0 0 0 0 0 0 0 0 0 2 1 0 1 0 3 2 0 1 1 0 0 12 0 1315.7024 Q9BQG0;I3L1L3;B4DE42 Q9BQG0 977 988 MYBBP1A Myb-binding protein 1A yes no 2 1.0513E-09 115.18 3 2 0.69184 0.85658 14.866 5 Median 0.69184 0.85658 7.4715 3 0 Plateau 0.67783 1.0474 2.6796 2 0 Median 117220000 69999000 47224000 65983000 39878000 26105000 51240000 30121000 21119000 13487 1708 13843 49077;49078;49079;49080;49081 74018;74019;74020;74021;74022;74023;74024;74025;74026 74021 9 VYTCTICSR SLEVHLSTHTVKHAKVYTCTICSRAYTSET TVKHAKVYTCTICSRAYTSETYLMKHMRKH K V Y S R A 0 1 0 0 2 0 0 0 0 1 0 0 0 0 0 1 2 0 1 1 0 0 9 0 1158.5162 D3DUR9;Q8TF68;R4GMR4 D3DUR9 432 440 ZNF384 Zinc finger protein 384 yes no 2 0.0093519 66.692 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5182700 0 5182700 5182700 0 5182700 0 0 0 13488 983 13844 49082 74027 74027 1 VYTDVQQVASSLTHPR LDINPVVHPHGHIFKVYTDVQQVASSLTHP YTDVQQVASSLTHPRFTLTQSEADADILFN K V Y P R F 1 1 0 1 0 2 0 0 1 0 1 0 0 0 1 2 2 0 1 3 0 0 16 0 1799.9166 A0A024R4U3;Q14166 A0A024R4U3 307 322 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes no 3 0.035334 10.615 1 0.60336 0.83518 NaN 1 Median 0.60336 0.83518 NaN 1 0 Median NaN NaN NaN 0 0 Median 11468000 7140600 4327000 11468000 7140600 4327000 0 0 0 13489 127 13845 49083 74028 74028 1 VYTLSVSGDR PRTPCNAGTFSQPEKVYTLSVSGDRLIVGT SQPEKVYTLSVSGDRLIVGTAGRRVLVWDL K V Y D R L 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 2 1 0 1 2 0 0 10 0 1095.556 J3QT28;A0A140VJF3;O43684;B4DDM6 J3QT28 140 149 BUB3 Mitotic checkpoint protein BUB3 yes no 2 0.0012817 106.68 4 2 0.75411 1.0625 23.791 3 Median 0.54537 0.75003 NaN 1 0 Median 0.77411 1.1207 7.5358 2 0 Median 29049000 17076000 11973000 15630000 10395000 5235400 13419000 6681700 6737400 13490 494 13846 49084;49085;49086;49087;49088;49089 74029;74030;74031;74032;74033;74034;74035;74036 74035 8 VYVDDIYVIPQPHFSTDQPPLPK NSKRVSFKLPKDQMKVYVDDIYVIPQPHFS IPQPHFSTDQPPLPKKGQSSINKEEVILSK K V Y P K K 0 0 0 3 0 2 0 0 1 2 1 1 0 1 5 1 1 0 2 3 0 0 23 0 2667.3585 Q8NG31;H0YCZ2;E9PPJ1 Q8NG31 1458 1480 CASC5 Protein CASC5 yes no 3 3.5694E-09 100.41 4 0.54184 0.68861 8.6932 3 Plateau 0.54184 0.68861 8.6932 3 0 Plateau NaN NaN NaN 0 0 Median 28866000 18903000 9963300 28866000 18903000 9963300 0 0 0 13491 1656 13847 49090;49091;49092;49093 74037;74038;74039;74040;74041;74042;74043;74044 74038 8 VYVGNLGNNGNK ______________________________ DCKVYVGNLGNNGNKTELERAFGYYGPLRS K V Y N K T 0 0 4 0 0 0 0 3 0 0 1 1 0 0 0 0 0 0 1 2 0 0 12 0 1247.6258 B2R6F3;P84103;A0A087X2D0 B2R6F3 12 23 SFRS3;SRSF3 Serine/arginine-rich splicing factor 3 yes no 2 7.4167E-12 123.98 3 1 0.31447 0.38704 48.924 4 Median 0.30498 0.38237 3.2529 3 0 Median 0.68023 1.0104 NaN 1 0 Median 63715000 47474000 16242000 56272000 42519000 13753000 7443200 4954600 2488600 13492 698 13848 49094;49095;49096;49097 74045;74046;74047;74048;74049;74050 74047 6 VYVGNLGTGAGK ______________________________ ETKVYVGNLGTGAGKGELERAFSYYGPLRT K V Y G K G 1 0 1 0 0 0 0 4 0 0 1 1 0 0 0 0 1 0 1 2 0 0 12 0 1134.6033 A0A0B4J1Z1;B4DEK2;C9JAB2;Q16629;Q8NB80 A0A0B4J1Z1 13 24 SRSF7 Serine/arginine-rich splicing factor 7 yes no 2 3.4794E-06 137.95 4 2 0.86252 1.3453 85.3 3 Median 0.2421 0.31248 NaN 1 0 Median 0.86446 1.3688 2.4524 2 0 Median 228790000 185650000 43139000 161710000 149340000 12366000 67083000 36310000 30773000 13493 414 13849 49098;49099;49100;49101;49102;49103 74051;74052;74053;74054;74055;74056;74057;74058 74052 8 VYVGNLGTGAGKGELER ______________________________ VGNLGTGAGKGELERAFSYYGPLRTVWIAR K V Y E R A 1 1 1 0 0 0 2 5 0 0 2 1 0 0 0 0 1 0 1 2 0 0 17 1 1718.8951 A0A0B4J1Z1;B4DEK2;C9JAB2;Q16629;Q8NB80 A0A0B4J1Z1 13 29 SRSF7 Serine/arginine-rich splicing factor 7 yes no 2;3 4.5371E-06 110.98 5 2 0.52417 0.69029 36.481 6 Median 0.48794 0.64265 8.3474 4 0 Median 0.84105 1.2944 5.7843 2 0 Median 113510000 72104000 41403000 94558000 61918000 32640000 18950000 10187000 8763100 13494 414 13850 49104;49105;49106;49107;49108;49109;49110 74059;74060;74061;74062;74063;74064;74065;74066;74067 74059 9 VYVGSIYYELGEDTIR QMAAQRQRALAIMCRVYVGSIYYELGEDTI YVGSIYYELGEDTIRQAFAPFGPIKSIDMS R V Y I R Q 0 1 0 1 0 0 2 2 0 2 1 0 0 0 0 1 1 0 3 2 0 0 16 0 1875.9254 A0A0J9YYL3;A0A0J9YXJ8;A0A0J9YVP6;A0A0J9YXX5;Q9UHX1;E9PL19;E9PMU7;E9PN18;A0A0J9YVR6;E9PQ56;A0A0J9YWM1;H0YEM1 A0A0J9YYL3 77 92 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 2 0.0020695 107.17 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1610100 1610100 0 1610100 1610100 0 0 0 0 13495 442 13851 49111 74068;74069 74068 2 VYVPALIFGQLLTSSNYDDDEKK NNGKGIPVVEHKVEKVYVPALIFGQLLTSS GQLLTSSNYDDDEKKVTGGRNGYGAKLCNI K V Y K K V 1 0 1 3 0 1 1 1 0 1 3 2 0 1 1 2 1 0 2 2 0 0 23 1 2614.3166 Q71UH4;Q02880;B4DKD0;E9PCY5 Q71UH4 128 150 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 3 6.775E-14 118.44 3 0.64167 0.79408 1.7499 3 Median 0.64167 0.79408 1.7499 3 0 Median NaN NaN NaN 0 0 Median 45518000 32305000 13213000 45518000 32305000 13213000 0 0 0 13496 1437 13852 49112;49113;49114 74070;74071;74072;74073;74074;74075;74076 74074 7 VYYVSEK DRPDGTYCFRLHNDRVYYVSEKIMKLAANI CFRLHNDRVYYVSEKIMKLAANISGDKLVS R V Y E K I 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 2 2 0 0 7 0 886.44363 Q9Y221;B3KM49;J3QLW7 Q9Y221 44 50 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog yes no 2 0.014861 92.467 1 0.70692 0.88475 NaN 1 Median 0.70692 0.88475 NaN 1 0 Median NaN NaN NaN 0 0 Median 54061000 33247000 20814000 54061000 33247000 20814000 0 0 0 13497 1800 13853 49115 74077;74078 74078 2 WAQPDTAPLPVPANIR SQCTSSSQLDETSHRWAQPDTAPLPVPANI AQPDTAPLPVPANIRFSIWISFFEIYNELL R W A I R F 3 1 1 1 0 1 0 0 0 1 1 0 0 0 4 0 1 1 0 1 0 0 16 0 1744.9261 O95235 O95235 283 298 KIF20A Kinesin-like protein KIF20A yes yes 2 2.0582E-06 78.096 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16354000 16354000 0 0 0 0 16354000 16354000 0 13498 1215 13854 49116 74079 74079 1 WDNLIYYALGGHK VGSKDMSTWVFGAERWDNLIYYALGGHKDA ERWDNLIYYALGGHKDAIVACFFESNSLDL R W D H K D 1 0 1 1 0 0 0 2 1 1 2 1 0 0 0 0 0 1 2 0 0 0 13 0 1548.7725 Q15269;A0A0B4J2E5 Q15269 176 188 PWP2 Periodic tryptophan protein 2 homolog yes no 3 0.003597 39.219 1 0.60347 0.91192 NaN 1 Median NaN NaN NaN 0 0 Median 0.60347 0.91192 NaN 1 0 Median 14369000 9752700 4615900 0 0 0 14369000 9752700 4615900 13499 1508 13855 49117 74080 74080 1 WELLQQVDTSTR KVRFLEQQNQVLQTKWELLQQVDTSTRTHN QTKWELLQQVDTSTRTHNLEPYFESFINNL K W E T R T 0 1 0 1 0 2 1 0 0 0 2 0 0 0 0 1 2 1 0 1 0 0 12 0 1474.7416 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 212 223 KRT1 Keratin, type II cytoskeletal 1 no no 2 0.00099033 79.659 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 254910000 254910000 0 0 0 0 254910000 254910000 0 + 13500 1113;1114 13856 49118;49119 74081;74082;74083;74084;74085 74081 5 WITEEQPNSATNLR IQTSSLGLLTGYIRRWITEEQPNSATNLRF RWITEEQPNSATNLRFVLEWTWNKVVLTKE R W I L R F 1 1 2 0 0 1 2 0 0 1 1 0 0 0 1 1 2 1 0 0 0 0 14 0 1657.806 Q8WYP5;Q96M44 Q8WYP5 568 581 AHCTF1 Protein ELYS yes no 2 0.0098466 38.634 1 0.45248 0.66341 NaN 1 Median NaN NaN NaN 0 0 Median 0.45248 0.66341 NaN 1 0 Median 8046600 5307600 2738900 0 0 0 8046600 5307600 2738900 13501 1670 13857 49120 74086 74086 1 WKDSDEADLVLAK IGATDSSGELMFLMKWKDSDEADLVLAKEA MKWKDSDEADLVLAKEANMKCPQIVIAFYE K W K A K E 2 0 0 3 0 0 1 0 0 0 2 2 0 0 0 1 0 1 0 1 0 0 13 1 1488.746 A4D177;Q13185 A4D177 142 154 CBX3 Chromobox protein homolog 3 yes no 3 0.0011768 37.594 1 0.52437 0.82941 NaN 1 Median NaN NaN NaN 0 0 Median 0.52437 0.82941 NaN 1 0 Median 17227000 9602900 7623800 0 0 0 17227000 9602900 7623800 13502 547 13858 49121 74087;74088 74088 2 WKDTDEADLVLAK IGATDSCGDLMFLMKWKDTDEADLVLAKEA MKWKDTDEADLVLAKEANVKCPQIVIAFYE K W K A K E 2 0 0 3 0 0 1 0 0 0 2 2 0 0 0 0 1 1 0 1 0 0 13 1 1502.7617 V9HWG0;P45973 V9HWG0 142 154 HEL25;CBX5 Chromobox protein homolog 5 yes no 3 0.052006 20.783 1 0.25129 0.40488 NaN 1 Median NaN NaN NaN 0 0 Median 0.25129 0.40488 NaN 1 0 Median 17882000 13324000 4558000 0 0 0 17882000 13324000 4558000 13503 1341 13859 49122 74089 74089 1 WNTDNTLGTEITVEDQLAR TKYRWTEYGLTFTEKWNTDNTLGTEITVED NTLGTEITVEDQLARGLKLTFDSSFSPNTG K W N A R G 1 1 2 2 0 1 2 1 0 1 2 0 0 0 0 0 4 1 0 1 0 0 19 0 2175.0444 A0A1L1UHR1;P21796;B3KTS5;C9JI87 A0A1L1UHR1 75 93 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2 0.0045501 31.614 1 3.0925 4.8601 NaN 1 Median NaN NaN NaN 0 0 Median 3.0925 4.8601 NaN 1 0 Median 38143000 11928000 26215000 0 0 0 38143000 11928000 26215000 13504 524 13860 49123 74090 74090 1 WQLSVATEQPELEGPR ASVTEIQEKWHDSRRWQLSVATEQPELEGP QLSVATEQPELEGPREGYGGFRGQREGSRG R W Q P R E 1 1 0 0 0 2 3 1 0 0 2 0 0 0 2 1 1 1 0 1 0 0 16 0 1838.9163 Q9NR30;Q8NI92 Q9NR30 703 718 DDX21;OK/SW-cl.65 Nucleolar RNA helicase 2 yes no 2 2.3098E-07 103.97 2 0.45322 0.73315 5.156 2 Median NaN NaN NaN 0 0 Median 0.45322 0.73315 5.156 2 0 Median 114830000 77886000 36940000 0 0 0 114830000 77886000 36940000 13505 1756 13861 49124;49125 74091;74092;74093;74094 74091 4 WQNNLLPSR VISPRFDVQLKDLEKWQNNLLPSRQFGFIV LKDLEKWQNNLLPSRQFGFIVLTTSAGIMD K W Q S R Q 0 1 2 0 0 1 0 0 0 0 2 0 0 0 1 1 0 1 0 0 0 0 9 0 1126.5883 B2R4W8;P62244;I3L3P7;A8K7H3;H3BVC7 B2R4W8 89 97 hCG_1994130;RPS15A 40S ribosomal protein S15a yes no 2 0.01272 60.019 2 0.36134 0.59032 1.0544 2 Median NaN NaN NaN 0 0 Median 0.36134 0.59032 1.0544 2 0 Median 185840000 136660000 49188000 0 0 0 185840000 136660000 49188000 13506 688 13862 49126;49127 74095;74096;74097;74098 74097 4 WQVVDTPGILDHPLEDR TKSLFVGHMDYKYLRWQVVDTPGILDHPLE VVDTPGILDHPLEDRNTIEMQAITALAHLR R W Q D R N 0 1 0 3 0 1 1 1 1 1 2 0 0 0 2 0 1 1 0 2 0 0 17 0 1988.9956 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;B4DHR2;O60747 Q53GS0 217 233 GTPBP4 Nucleolar GTP-binding protein 1 yes no 3 0.00018359 45.608 2 0.56897 0.90862 6.6322 2 Median NaN NaN NaN 0 0 Median 0.56897 0.90862 6.6322 2 0 Median 80691000 53420000 27271000 0 0 0 80691000 53420000 27271000 13507 975 13863 49128;49129 74099;74100;74101;74102 74099 4 WSPTHEQQLISGSLDNIVK SLSLTSHTGWVTSVKWSPTHEQQLISGSLD HEQQLISGSLDNIVKLWDTRSCKAPLYDLA K W S V K L 0 0 1 1 0 2 1 1 1 2 2 1 0 0 1 3 1 1 0 1 0 0 19 0 2151.096 Q53T99;Q9GZL7;B4DRY7 Q53T99 350 368 WDR12 Ribosome biogenesis protein WDR12 yes no 3 0.021812 30.19 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17926000 17926000 0 0 0 0 17926000 17926000 0 13508 1543 13864 49130 74103 74103 1 WTEYGLTFTEK TETTKVTGSLETKYRWTEYGLTFTEKWNTD TKYRWTEYGLTFTEKWNTDNTLGTEITVED R W T E K W 0 0 0 0 0 0 2 1 0 0 1 1 0 1 0 0 3 1 1 0 0 0 11 0 1373.6503 A0A1L1UHR1;P21796;B3KTS5;C9JI87 A0A1L1UHR1 64 74 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2 0.0079893 51.762 1 3.0404 4.4837 NaN 1 Median NaN NaN NaN 0 0 Median 3.0404 4.4837 NaN 1 0 Median 7235000 1782200 5452700 0 0 0 7235000 1782200 5452700 13509 524 13865 49131 74104 74104 1 WTLLQEQGTK KVRFLEQQNKVLETKWTLLQEQGTKTVRQN VLETKWTLLQEQGTKTVRQNLEPLFEQYIN K W T T K T 0 0 0 0 0 2 1 1 0 0 2 1 0 0 0 0 2 1 0 0 0 0 10 0 1202.6295 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;B4DRY0;CON__P04259;B4DKV4;CON__P13647;P13647;B4E1T1;F8W0C6 B4DRR0 166 175 KRT6A;KRT6C;KRT5 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 5 no no 2 0.00073873 85.862 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70022000 70022000 0 0 0 0 70022000 70022000 0 + 13510 459;953;961 13866 49132 74105 74105 1 WVEISNEVR KVAFKDFSGDMCKLKWVEISNEVRKFRTLT DMCKLKWVEISNEVRKFRTLTELILDAQEH K W V V R K 0 1 1 0 0 0 2 0 0 1 0 0 0 0 0 1 0 1 0 2 0 0 9 0 1130.572 E9PKP7;P17480;A8K962;B4DNQ1;Q05BZ1;Q9BQR2 E9PKP7 72 80 UBTF Nucleolar transcription factor 1 yes no 2 0.0093519 66.692 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11673000 0 11673000 0 0 0 11673000 0 11673000 13511 1039 13867 49133;49134 74106;74107 74107 2 YAALSDQGLDIK SQSTKPKKVRPSASRYAALSDQGLDIKAAF ASRYAALSDQGLDIKAAFQPEANPSHLTLN R Y A I K A 2 0 0 2 0 1 0 1 0 1 2 1 0 0 0 1 0 0 1 0 0 0 12 0 1292.6612 Q8WX93;L0R8B3;Q7L8P5 Q8WX93 1348 1359 PALLD;DKFZp586L0518 Palladin yes no 2 0.029875 65.627 1 0.4307 0.55488 NaN 1 Median 0.4307 0.55488 NaN 1 0 Median NaN NaN NaN 0 0 Median 1827100 1223600 603480 1827100 1223600 603480 0 0 0 13512 1669 13868 49135 74108 74108 1 YAAPEQNNDPQQSK SAPFFIPTIPGLVPRYAAPEQNNDPQQSKV RYAAPEQNNDPQQSKVVNLGVLAQKSDFCL R Y A S K V 2 0 2 1 0 3 1 0 0 0 0 1 0 0 2 1 0 0 1 0 0 0 14 0 1588.7118 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 745 758 WDR36 WD repeat-containing protein 36 yes no 2 0.020181 31.597 1 0.91576 1.2454 NaN 1 Median NaN NaN NaN 0 0 Median 0.91576 1.2454 NaN 1 0 Median 3415500 1841400 1574100 0 0 0 3415500 1841400 1574100 13513 404 13869 49136 74109 74109 1 YADVIIPR FVKPAFEEFCLPTKKYADVIIPRGADNLVA FCLPTKKYADVIIPRGADNLVAINLIVQHI K Y A P R G 1 1 0 1 0 0 0 0 0 2 0 0 0 0 1 0 0 0 1 1 0 0 8 0 945.52837 A0A024R912;Q9BZX2;A0A0S2Z5Y6;A0A0S2Z601;Q9HA47 A0A024R912 203 210 UCK2;UCK1 Uridine kinase;Uridine-cytidine kinase 2;Uridine-cytidine kinase 1 yes no 2 0.012943 67.032 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1722600 0 1722600 0 0 0 1722600 0 1722600 13514 211 13870 49137 74110 74110 1 YAELLAIIEELGK GYTQGTGNSQVPQSKYAELLAIIEELGKEI SKYAELLAIIEELGKEIRPTYAGSKSAMER K Y A G K E 2 0 0 0 0 0 3 1 0 2 3 1 0 0 0 0 0 0 1 0 0 0 13 0 1460.8126 F5GZF0;O14519 F5GZF0 35 47 CDK2AP1 Cyclin-dependent kinase 2-associated protein 1 yes no 2 0.0054728 81.625 1 0.94075 1.1879 NaN 1 Median 0.94075 1.1879 NaN 1 0 Median NaN NaN NaN 0 0 Median 12349000 5655900 6693000 12349000 5655900 6693000 0 0 0 13515 1055 13871 49138 74111 74111 1 YAGPEDDAAITLAFSK KEYFADMERHRILFRYAGPEDDAAITLAFS AGPEDDAAITLAFSKKKIDDRKEWLTNFME R Y A S K K 4 0 0 2 0 0 1 1 0 1 1 1 0 1 1 1 1 0 1 0 0 0 16 0 1667.8043 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80 Q71UH4 633 648 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 4.4625E-07 129.76 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 102190000 102190000 0 34045000 34045000 0 68144000 68144000 0 13516 1437 13872 49139;49140;49141;49142 74112;74113;74114;74115;74116 74114 5 YAHVVLR KIAFAITAIKGVGRRYAHVVLRKADIDLTK AIKGVGRRYAHVVLRKADIDLTKRAGELTE R Y A L R K 1 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 2 0 0 7 0 856.49192 P62269 P62269 40 46 RPS18 40S ribosomal protein S18 yes yes 2 0.0085817 120.76 4 1 0.91906 1.2677 6.8303 3 Median 0.91906 1.2677 6.8303 3 0 Median NaN NaN NaN 0 0 Median 439460000 241600000 197860000 418770000 241600000 177170000 20694000 0 20694000 13517 1402 13873 49143;49144;49145;49146;49147 74117;74118;74119;74120;74121 74117 5 YAHVVLRK KIAFAITAIKGVGRRYAHVVLRKADIDLTK IKGVGRRYAHVVLRKADIDLTKRAGELTED R Y A R K A 1 1 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 1 2 0 0 8 1 984.58688 P62269 P62269 40 47 RPS18 40S ribosomal protein S18 yes yes 2 0.047696 41.502 1 0.99975 1.3009 NaN 1 Median 0.99975 1.3009 NaN 1 0 Median NaN NaN NaN 0 0 Median 12994000 6488500 6505000 12994000 6488500 6505000 0 0 0 13518 1402 13874 49148 74122 74122 1 YAICSALAASALPALVMSK TWRRWHRRVNTTQKRYAICSALAASALPAL SALAASALPALVMSKGHRIEEVPELPLVVE R Y A S K G 6 0 0 0 1 0 0 0 0 1 3 1 1 0 1 3 0 0 1 1 0 0 19 0 1936.0162 P36578;Q59GY2;B4DFI6;H3BM89;B4DMJ6;B4DMJ2;H3BTP7 P36578 122 140 RPL4 60S ribosomal protein L4 yes no 2 2.2874E-17 123.68 7 2 0.70791 0.87497 10.849 7 Median 0.72597 0.91631 9.6261 5 0 Median 0.49382 0.78972 5.2708 2 0 Median 161730000 92015000 69718000 68140000 32544000 35596000 93593000 59470000 34122000 13519 1325 13875;13876 49149;49150;49151;49152;49153;49154;49155;49156;49157 74123;74124;74125;74126;74127;74128;74129;74130;74131;74132;74133;74134 74134 552 12 YAILNEPFK NHGYARWQDIQNDPRYAILNEPFKGEMNRG IQNDPRYAILNEPFKGEMNRGNFLEIKNKF R Y A F K G 1 0 1 0 0 0 1 0 0 1 1 1 0 1 1 0 0 0 1 0 0 0 9 0 1093.5808 B3KY63;F5GWX5;A0A0C4DGG9;Q14839 B3KY63 1732 1740 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.0016569 94.302 2 3 0.81318 1.0343 36.156 3 Median 0.81166 1.0074 3.727 2 0 Median 1.2092 1.8812 NaN 1 0 Median 155530000 87731000 67800000 118890000 65143000 53746000 36641000 22588000 14054000 13520 428 13877 49158;49159;49160;49161;49162 74135;74136;74137;74138;74139;74140 74135 6 YAIQLITAASLVCR AYTVLTRIGLETSLRYAIQLITAASLVCRK RYAIQLITAASLVCRKRKGTEVQVDDIKRV R Y A C R K 3 1 0 0 1 1 0 0 0 2 2 0 0 0 0 1 1 0 1 1 0 0 14 0 1577.8599 Q9Y230;B3KNL2 Q9Y230 401 414 RUVBL2 RuvB-like 2 yes no 2 1.6513E-06 122.7 5 1 0.56138 0.75896 33.599 4 Median 0.56138 0.75896 33.599 4 0 Median NaN NaN NaN 0 0 Median 74184000 47843000 26341000 70574000 47843000 22731000 3610000 0 3610000 13521 1801 13878 49163;49164;49165;49166;49167;49168 74141;74142;74143;74144;74145;74146;74147 74145 7 YALTGDEVK RECLPLIIFLRNRLKYALTGDEVKKICMQR LRNRLKYALTGDEVKKICMQRFIKIDGKVR K Y A V K K 1 0 0 1 0 0 1 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 9 0 994.49713 B2R491;P62701;Q96IR1;Q53HV1;Q8TD47;C9JEH7;A4FU11;Q496E4;P22090;B7Z1M6;Q53HI6 B2R491 54 62 RPS4X;RPS4Y2;RPS4Y1 40S ribosomal protein S4;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1 yes no 1;2 0.00038371 109.01 3 1 0.79782 1.0534 21.39 3 Median 0.79782 1.0534 21.39 3 0 Median NaN NaN NaN 0 0 Median 309750000 182880000 126880000 289500000 162630000 126880000 20252000 20252000 0 13522 681 13879 49169;49170;49171;49172 74148;74149;74150;74151;74152;74153 74153 6 YALTGDEVKK RECLPLIIFLRNRLKYALTGDEVKKICMQR RNRLKYALTGDEVKKICMQRFIKIDGKVRT K Y A K K I 1 0 0 1 0 0 1 1 0 0 1 2 0 0 0 0 1 0 1 1 0 0 10 1 1122.5921 B2R491;P62701;Q96IR1;Q53HV1;Q8TD47;C9JEH7;A4FU11;Q496E4;P22090;B7Z1M6;Q53HI6 B2R491 54 63 RPS4X;RPS4Y2;RPS4Y1 40S ribosomal protein S4;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1 yes no 2;3 2.7187E-11 141.52 7 2 0.77481 0.94413 21.285 8 Median 0.80338 0.98218 7.2527 6 0 Median 0.39443 0.63427 0.57789 2 0 Median 680600000 384330000 296270000 604590000 330200000 274400000 76005000 54135000 21870000 13523 681 13880 49173;49174;49175;49176;49177;49178;49179;49180;49181 74154;74155;74156;74157;74158;74159;74160;74161;74162;74163;74164;74165;74166;74167;74168;74169 74164 16 YALYDASFETK PFKHFVGMLPEKDCRYALYDASFETKESRK KDCRYALYDASFETKESRKEELMFFLWAPE R Y A T K E 2 0 0 1 0 0 1 0 0 0 1 1 0 1 0 1 1 0 2 0 0 0 11 0 1306.6081 B7Z9M9;V9HWA6;P60981;F6RFD5 B7Z9M9 65 75 HEL32;DSTN Destrin yes no 2 0.0034992 85.29 2 0.43145 0.54618 NaN 1 Median 0.43145 0.54618 NaN 1 0 Median NaN NaN NaN 0 0 Median 15301000 13808000 1492900 15301000 13808000 1492900 0 0 0 13524 921 13881 49182;49183 74170;74171 74171 2 YALYDATYETK PYATFVKMLPDKDCRYALYDATYETKESKK KDCRYALYDATYETKESKKEDLVFIFWAPE R Y A T K E 2 0 0 1 0 0 1 0 0 0 1 1 0 0 0 0 2 0 3 0 0 0 11 0 1336.6187 G3V1A4;V9HWI5;E9PK25;P23528;E9PP50;E9PLJ3;B4E112;E9PQB7 G3V1A4 65 75 CFL1;HEL-S-15 Cofilin-1 no no 2 3.856E-08 123.88 3 2 0.72926 0.90769 104.36 5 Median 0.72889 0.90717 3.6952 3 0 Plateau 3.9139 5.8421 2.2763 2 0 Median 83689000 44393000 39295000 65892000 40380000 25513000 17796000 4013700 13783000 13525 1037 13882 49184;49185;49186;49187;49188 74172;74173;74174;74175;74176;74177;74178;74179;74180;74181 74177 10 YANEVNSDAGAFK KKWSEALVLYDRVLKYANEVNSDAGAFKNS LKYANEVNSDAGAFKNSLKDLPDVQELITQ K Y A F K N 3 0 2 1 0 0 1 1 0 0 0 1 0 1 0 1 0 0 1 1 0 0 13 0 1384.6259 Q9UHB9;B4DVI7;Q96K98;Q96K97 Q9UHB9 492 504 SRP68 Signal recognition particle subunit SRP68 yes no 2 0.00092654 102.53 3 1 0.5443 0.6965 72.534 3 Median 0.53418 0.68104 3.1743 2 0 Median 1.7312 2.3907 NaN 1 0 Median 15119000 9173600 5945500 10943000 7485600 3457800 4175800 1688100 2487700 13526 1784 13883 49189;49190;49191;49192 74182;74183;74184;74185;74186 74185 4 YAPGDAVEK SARTLYEVSLQESIRYAPGDAVEKWLNDLL LQESIRYAPGDAVEKWLNDLLCLDCLNITR R Y A E K W 2 0 0 1 0 0 1 1 0 0 0 1 0 0 1 0 0 0 1 1 0 0 9 0 948.45526 Q05CW7;Q9H0A0;A0A087WV29 Q9H0A0 471 479 NAT10 N-acetyltransferase 10 no no 2 0.01229 60.019 1 1 0.62478 0.94237 NaN 1 Median NaN NaN NaN 0 0 Median 0.62478 0.94237 NaN 1 0 Median 16362000 10134000 6228400 0 0 0 16362000 10134000 6228400 13527 1730;1443 13884 49193;49194 74187;74188 74188 2 YAPSGFYIASGDVSGK ADIYTEHAHQVVVAKYAPSGFYIASGDVSG APSGFYIASGDVSGKLRIWDTTQKEHLLKY K Y A G K L 2 0 0 1 0 0 0 3 0 1 0 1 0 1 1 3 0 0 2 1 0 0 16 0 1617.7675 V9HWG7;Q53H17;Q53GN4;Q59ER5;O75083;D6RD66;B4DS71 V9HWG7 66 81 HEL-S-52;WDR1 WD repeat-containing protein 1 yes no 2 0.0011004 81.565 3 1.0336 1.3165 14.679 3 Median 1.0336 1.3165 14.679 3 0 Median NaN NaN NaN 0 0 Median 16510000 7637200 8872400 16510000 7637200 8872400 0 0 0 13528 1195 13885 49195;49196;49197 74189;74190;74191;74192;74193 74191 5 YAPTEAQLNAVDALIDSMSLAK DLRQYMFSSLKNSKKYAPTEAQLNAVDALI LNAVDALIDSMSLAKKDEKTDTLEDLFPTT K Y A A K K 5 0 1 2 0 1 1 0 0 1 3 1 1 0 1 2 1 0 1 1 0 0 22 0 2320.1621 P13010;Q53T09 P13010 444 465 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 1.208E-11 71.286 1 0.53267 0.8641 NaN 1 Median NaN NaN NaN 0 0 Median 0.53267 0.8641 NaN 1 0 Median 53091000 37516000 15575000 0 0 0 53091000 37516000 15575000 13529 1262 13886 49198 74194 74194 524 1 YAQAGFEGFK FGSEEQLLPVEKLPKYAQAGFEGFKTLNRI EKLPKYAQAGFEGFKTLNRIQSKLYRAALE K Y A F K T 2 0 0 0 0 1 1 2 0 0 0 1 0 2 0 0 0 0 1 0 0 0 10 0 1116.524 O75643;A4FU77;Q9H8B9 O75643 470 479 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.00052297 125.82 1 2 1.1587 1.7455 6.0934 2 Median NaN NaN NaN 0 0 Median 1.1587 1.7455 6.0934 2 0 Median 29345000 13472000 15873000 0 0 0 29345000 13472000 15873000 13530 1206 13887 49199;49200;49201 74195;74196;74197;74198;74199 74197 5 YAQVTNNPENDGCINAVLLV ELGLVTQGGKVIWGKYAQVTNNPENDGCIN NNPENDGCINAVLLV_______________ K Y A L V - 2 0 4 1 1 1 1 1 0 1 2 0 0 0 1 0 1 0 1 3 0 0 20 0 2203.0579 Q5J7U2;O95478 Q5J7U2 241 260 CDK105;NSA2 Ribosome biogenesis protein NSA2 homolog yes no 2 0.0002677 80.469 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16616000 0 0 16616000 0 0 0 0 0 13531 1221 13888 49202;49203 74200;74201 74201 2 YASINAHLGIEQSR HIPYREDKNLTGTARYASINAHLGIEQSRR RYASINAHLGIEQSRRDDMESLGYVLMYFN R Y A S R R 2 1 1 0 0 1 1 1 1 2 1 0 0 0 0 2 0 0 1 0 0 0 14 0 1557.79 Q05DL3;V9HW00;P48729;Q6PJ06;Q8N752;B4E1D9;D6REM4;H0Y9X2;U3KQK7;B4DFH4;E7ETM0;B4DER9 Q05DL3 187 200 CSNK1A1;HEL-S-77p;CSNK1A1L Casein kinase I isoform alpha;Casein kinase I isoform alpha-like yes no 3 0.00036323 81.565 4 2 1.1052 1.621 45.549 3 Median 0.56477 0.75054 NaN 1 0 Median 1.1638 1.6509 2.5842 2 0 Median 32065000 16490000 15575000 18240000 9608700 8630800 13826000 6880900 6944600 13532 1349 13889 49204;49205;49206;49207;49208;49209 74202;74203;74204;74205;74206;74207;74208;74209 74205 8 YATSCYSCCPR LDGSQYNPVKQQLVRYATSCYSCCPRLASV QLVRYATSCYSCCPRLASVLLYSDYGIGEV R Y A P R L 1 1 0 0 3 0 0 0 0 0 0 0 0 0 1 2 1 0 2 0 0 0 11 0 1423.5319 Q13057;K7EN91;K7ES73;K7EPC2 Q13057 136 146 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes no 2 4.0765E-05 94.692 1 0.33574 0.44547 NaN 1 Median 0.33574 0.44547 NaN 1 0 Median NaN NaN NaN 0 0 Median 2429700 1665900 763780 2429700 1665900 763780 0 0 0 13533 1462 13890 49210 74210 74210 1 YAVGEECDFEVGK LEKLVDTAWLEIMTKYAVGEECDFEVGKEK TKYAVGEECDFEVGKEKMLKVKIVKIHPLE K Y A G K E 1 0 0 1 1 0 3 2 0 0 0 1 0 1 0 0 0 0 1 2 0 0 13 0 1501.6395 Q9UIG0 Q9UIG0 114 126 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 3.3221E-07 146.11 4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 106930000 0 106930000 83680000 0 83680000 23254000 0 23254000 13534 1786 13891 49211;49212;49213;49214;49215;49216 74211;74212;74213;74214;74215;74216 74211 6 YAVLYQPLFDK IEAKFYEEVHDLERKYAVLYQPLFDKRFEI LERKYAVLYQPLFDKRFEIINAIYEPTEEE K Y A D K R 1 0 0 1 0 1 0 0 0 0 2 1 0 1 1 0 0 0 2 1 0 0 11 0 1355.7125 F8W118;F8VY35;F8VV59;A0A024RBE6;F5H4R6;H0YIV4;A0A024RBB7;P55209;F8VRJ2;H0YH88;H0YHC3;F8W020;F8VXI6;F8VUX1;F8W543;B7Z9C2;F8W0J6;B7Z2V4;B7Z5H0;F8VVB5 F8W118 65 75 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 2 5.5136E-08 127.4 4 2 0.75367 0.98609 18.814 6 Median 0.7571 1.0172 1.5592 4 0 Linear 0.43777 0.69366 3.0577 2 0 Median 703380000 416540000 286850000 518600000 288690000 229910000 184780000 127840000 56937000 13535 267 13892 49217;49218;49219;49220;49221;49222 74217;74218;74219;74220;74221;74222;74223;74224;74225;74226;74227;74228 74227 12 YAVPSAGLR NFVLKAIRPQIDLKRYAVPSAGLRLFALHA QIDLKRYAVPSAGLRLFALHASQFSTCLLD R Y A L R L 2 1 0 0 0 0 0 1 0 0 1 0 0 0 1 1 0 0 1 1 0 0 9 0 932.50797 P78527;B4DL41 P78527 265 273 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.019605 52.786 1 1 0.44959 0.59811 19.925 2 Median 0.39128 0.51951 NaN 1 0 Median 0.5166 0.6886 NaN 1 0 Median 19026000 12554000 6472300 14047000 9849400 4197100 4979700 2704600 2275100 13536 1427 13893 49223;49224 74229;74230 74230 2 YAVTTGDHGIIR DESGVFIYTTSNHIKYAVTTGDHGIIRTLD HIKYAVTTGDHGIIRTLDLPIYVTRVKGNN K Y A I R T 1 1 0 1 0 0 0 2 1 2 0 0 0 0 0 0 2 0 1 1 0 0 12 0 1301.6728 P53621 P53621 551 562 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 3 0.00033788 105.13 1 0.50664 0.69632 NaN 1 Median 0.50664 0.69632 NaN 1 0 Median NaN NaN NaN 0 0 Median 6917600 4320600 2597000 6917600 4320600 2597000 0 0 0 13537 1371 13894 49225 74231 74231 1 YCIFANFSVTGGK KGKCLKTYTGHKNEKYCIFANFSVTGGKWI EKYCIFANFSVTGGKWIVSGSEDNLVYIWN K Y C G K W 1 0 1 0 1 0 0 2 0 1 0 1 0 2 0 1 1 0 1 1 0 0 13 0 1462.6915 P61964;Q86VZ2 P61964 260 272 WDR5;WDR5B WD repeat-containing protein 5;WD repeat-containing protein 5B yes no 2 0.00010915 118.23 3 0.8298 1.0739 7.3322 3 Median 0.8298 1.0739 7.3322 3 0 Median NaN NaN NaN 0 0 Median 25970000 12776000 13194000 25970000 12776000 13194000 0 0 0 13538 1394 13895 49226;49227;49228 74232;74233;74234 74233 3 YCLPFLQPGR AKLGKEIEEYIHKPKYCLPFLQPGRLVKVK IHKPKYCLPFLQPGRLVKVKNEGDDFGWGV K Y C G R L 0 1 0 0 1 1 0 1 0 0 2 0 0 1 2 0 0 0 1 0 0 0 10 0 1249.6278 P42285;A8K6I4;B4E3M6 P42285 649 658 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 0.024069 42.869 1 0.66653 0.92892 NaN 1 Median 0.66653 0.92892 NaN 1 0 Median NaN NaN NaN 0 0 Median 6163600 3587200 2576300 6163600 3587200 2576300 0 0 0 13539 1336 13896 49229 74235 74235 1 YCNSLPDIPFDPK HRTLPERSGVVCRVKYCNSLPDIPFDPKFI VKYCNSLPDIPFDPKFITYPFDQNRFVQYK K Y C P K F 0 0 1 2 1 0 0 0 0 1 1 1 0 1 3 1 0 0 1 0 0 0 13 0 1564.7232 A0A024R0H6;Q8N7H5 A0A024R0H6 35 47 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 0.00073545 94.82 3 0.73437 0.93042 0.61892 2 Median 0.73437 0.93042 0.61892 2 0 Median NaN NaN NaN 0 0 Median 24994000 19198000 5795900 24994000 19198000 5795900 0 0 0 13540 36 13897 49230;49231;49232 74236;74237;74238 74238 3 YCQVIR DGKKQLEKDFSSMKKYCQVIRVIAHTQMRL EKDFSSMKKYCQVIRVIAHTQMRLLPLRQK K Y C I R V 0 1 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 6 0 837.41671 P39023;Q8TBW1;Q96QL0;Q9NY85;G5E9G0;Q49AJ9;Q9BT63;H7C422;H7C3M2;B5MCW2 P39023 156 161 RPL3;rpl3 60S ribosomal protein L3 yes no 2 0.035215 95.378 2 0.7698 1.0629 7.3794 2 Median 0.7698 1.0629 7.3794 2 0 Median NaN NaN NaN 0 0 Median 371760000 204460000 167310000 371760000 204460000 167310000 0 0 0 13541 1330 13898 49233;49234 74239;74240;74241;74242 74241 4 YCTVVAYPTDLYTIR AAAFAGPVDLCTYPKYCTVVAYPTDLYTIR YCTVVAYPTDLYTIRMRLVNRFYRRLSALV K Y C I R M 1 1 0 1 1 0 0 0 0 1 1 0 0 0 1 0 3 0 3 2 0 0 15 0 1833.8971 Q9NSI6;Q5R2U7;H7C409 Q9NSI6 1197 1211 BRWD1;WDR9 Bromodomain and WD repeat-containing protein 1 yes no 2 0.00016825 71.555 3 1.0891 1.5447 NaN 1 Median 1.0891 1.5447 NaN 1 0 Median NaN NaN NaN 0 0 Median 7879900 4309300 3570600 7879900 4309300 3570600 0 0 0 13542 1758 13899 49235;49236;49237 74243;74244;74245;74246 74245 4 YCYLQNEVFGLFQK NQLKDMLANFRGSEKYCYLQNEVFGLFQKL KYCYLQNEVFGLFQKLENINGVTDGYLNSL K Y C Q K L 0 0 1 0 1 2 1 1 0 0 2 1 0 2 0 0 0 0 2 1 0 0 14 0 1807.8603 P15924;Q4LE79;B4E2A0;B4DKX6;B4DWT7 P15924 739 752 DSP;DSP variant protein Desmoplakin yes no 2 1.7478E-05 130.94 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6648000 6648000 0 6648000 6648000 0 0 0 0 13543 1270 13900 49238;49239 74247;74248 74247 2 YCYYNETHK QDDPFELFIAATNIRYCYYNETHKILGNTF AATNIRYCYYNETHKILGNTFGMCVLQDFE R Y C H K I 0 0 1 0 1 0 1 0 1 0 0 1 0 0 0 0 1 0 3 0 0 0 9 0 1276.5183 Q05CW7;E9PMU0;E9PJN6;Q9H0A0 Q9H0A0 104 112 NAT10 N-acetyltransferase 10 no no 2;3 0.00016588 122.13 7 1 0.78538 0.99852 21.52 8 Median 0.79341 1 7.5051 7 0 Median 0.42815 0.57795 NaN 1 0 Median 112890000 63138000 49755000 109650000 60830000 48816000 3246100 2307800 938260 13544 1730;1443 13901 49240;49241;49242;49243;49244;49245;49246;49247 74249;74250;74251;74252;74253;74254;74255;74256;74257;74258;74259;74260 74250 12 YDAFGEDSSSAMGVENR KISRMLAAKTVLAIRYDAFGEDSSSAMGVE AFGEDSSSAMGVENRAKLEARLRTLEDRGI R Y D N R A 2 1 1 2 0 0 2 2 0 0 0 0 1 1 0 3 0 0 1 1 0 0 17 0 1833.7476 Q9Y2X3;B3KN82 Q9Y2X3 372 388 NOP58 Nucleolar protein 58 yes no 2 1.2803E-18 141.37 7 5 0.63204 0.86308 14.331 12 Median 0.68669 0.9402 12.485 7 0 Median 0.49826 0.78247 10.894 5 0 Median 321090000 212710000 108380000 36466000 22131000 14335000 284620000 190580000 94045000 13545 1810 13902;13903 49248;49249;49250;49251;49252;49253;49254;49255;49256;49257;49258;49259 74261;74262;74263;74264;74265;74266;74267;74268;74269;74270;74271;74272;74273;74274;74275;74276;74277;74278;74279;74280;74281 74268 842 21 YDAFLASESLIK KLNKNKKLVKKLAKKYDAFLASESLIKQIP AKKYDAFLASESLIKQIPRILGPGLNKAGK K Y D I K Q 2 0 0 1 0 0 1 0 0 1 2 1 0 1 0 2 0 0 1 0 0 0 12 0 1355.6973 P62906;Q1JQ76;A0A024RCW3 P62906 107 118 RPL10A 60S ribosomal protein L10a;Ribosomal protein yes no 2 0.00082592 101.38 4 2 0.73295 1.0233 10.57 4 Median 0.81571 1.0486 14.401 2 0 Median 0.68093 1.0227 11.024 2 0 Median 48180000 24124000 24056000 18021000 6407000 11614000 30158000 17717000 12441000 13546 1415 13904 49260;49261;49262;49263;49264;49265 74282;74283;74284;74285;74286;74287;74288;74289;74290 74287 9 YDAGEHGLQEAEK FVDYVAVEQLDGDNKYDAGEHGLQEAEKGV NKYDAGEHGLQEAEKGVKFLTLPPVLHLQL K Y D E K G 2 0 0 1 0 1 3 2 1 0 1 1 0 0 0 0 0 0 1 0 0 0 13 0 1445.6423 Q6U8A4;Q93009;B7ZAX6;B7Z855;H3BND8;B7Z7T5;F5H2X1;B7Z842 Q6U8A4 389 401 USP7 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 7 yes no 2 0.0033619 98.902 2 1 0.7341 0.95689 28.65 2 Median 0.91676 1.1718 NaN 1 0 Median 0.58783 0.78141 NaN 1 0 Median 7275900 3615000 3660900 4260300 1816100 2444200 3015600 1798900 1216700 13547 1600 13905 49266;49267;49268 74291;74292;74293;74294 74292 4 YDECLAVYR KLKELYGQVLYRLERYDECLAVYRDLVRNS LYRLERYDECLAVYRDLVRNSQDDYDEERK R Y D Y R D 1 1 0 1 1 0 1 0 0 0 1 0 0 0 0 0 0 0 2 1 0 0 9 0 1187.5281 V9HWK0;O76094;Q86X80;A0PJJ5;Q71V07;Q0D2M6;R4GNC1 V9HWK0 125 133 HEL103;SRP72 Signal recognition particle subunit SRP72 yes no 2 0.026399 51.346 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2010100 2010100 0 2010100 2010100 0 0 0 0 13548 1211 13906 49269 74295 74295 1 YDGFRESEFEK GHGLKLLTKNGHVYKYDGFRESEFEKLSDF HVYKYDGFRESEFEKLSDFFKTHYRLELME K Y D E K L 0 1 0 1 0 0 3 1 0 0 0 1 0 2 0 1 0 0 1 0 0 0 11 1 1405.615 A0A024R4Z6;Q08945;Q59GH7 A0A024R4Z6 74 84 SSRP1 FACT complex subunit SSRP1 yes no 2;3 0.0020309 107.34 3 0.78283 1.0333 7.7283 3 Median 0.78283 1.0333 7.7283 3 0 Median NaN NaN NaN 0 0 Median 173720000 94646000 79077000 173720000 94646000 79077000 0 0 0 13549 132 13907 49270;49271;49272 74296;74297;74298 74297 3 YDGIILPGK HRISKEEAMRWFQQKYDGIILPGK______ RWFQQKYDGIILPGK_______________ K Y D G K - 0 0 0 1 0 0 0 2 0 2 1 1 0 0 1 0 0 0 1 0 0 0 9 0 974.54368 Q5VVD0;P62913;Q08ES8 Q5VVD0 170 178 RPL11 60S ribosomal protein L11 yes no 1;2 0.0018186 110.12 4 2 0.71982 1.0296 8.3431 6 Median 0.76093 1.0081 10.397 4 0 Median 0.66821 1.0573 3.0901 2 0 Median 1432900000 800210000 632660000 1212100000 670690000 541440000 220740000 129520000 91224000 13550 1416 13908 49273;49274;49275;49276;49277;49278 74299;74300;74301;74302;74303;74304;74305;74306;74307;74308;74309;74310;74311;74312;74313;74314 74303 16 YDGQVAVFGSDLQEK KEVLTEDKCLQRQNRYDGQVAVFGSDLQEK YDGQVAVFGSDLQEKLGKQKYFLVGAGAIG R Y D E K L 1 0 0 2 0 2 1 2 0 0 1 1 0 1 0 1 0 0 1 2 0 0 15 0 1654.7839 A0A024R1A3;P22314 A0A024R1A3 451 465 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 3.0413E-07 130.15 3 0.5072 0.65109 50.62 2 Median 0.5072 0.65109 50.62 2 0 Median NaN NaN NaN 0 0 Median 9412800 6971100 2441600 9412800 6971100 2441600 0 0 0 13551 55 13909 49279;49280;49281 74315;74316;74317;74318;74319 74315 5 YDPSIGIYGLDFYVVLGRPGFSIADK NFGFGIQEHIDLGIKYDPSIGIYGLDFYVV FYVVLGRPGFSIADKKRRTGCIGAKHRISK K Y D D K K 1 1 0 3 0 0 0 4 0 3 2 1 0 2 2 2 0 0 3 2 0 0 26 1 2861.464 Q5VVD0;P62913;Q5VVC8;Q08ES8 Q5VVD0 119 144 RPL11 60S ribosomal protein L11 yes no 3 0.0018656 64.962 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18014000 18014000 0 18014000 18014000 0 0 0 0 13552 1416 13910 49282 74320 74320 1 YDPSIGIYGLDFYVVLGRPGFSIADKK NFGFGIQEHIDLGIKYDPSIGIYGLDFYVV YVVLGRPGFSIADKKRRTGCIGAKHRISKE K Y D K K R 1 1 0 3 0 0 0 4 0 3 2 2 0 2 2 2 0 0 3 2 0 0 27 2 2989.5589 Q5VVD0;P62913;Q5VVC8;Q08ES8 Q5VVD0 119 145 RPL11 60S ribosomal protein L11 yes no 3 0.00050912 58.92 2 0.57116 0.69975 3.7083 2 Median 0.57116 0.69975 3.7083 2 0 Median NaN NaN NaN 0 0 Median 149870000 80456000 69415000 149870000 80456000 69415000 0 0 0 13553 1416 13911 49283;49284 74321;74322 74321 2 YDPSLTFSENVDLTEPIISR APCTVIAAANPIGGRYDPSLTFSENVDLTE TFSENVDLTEPIISRFDILCVVRDTVDPVQ R Y D S R F 0 1 1 2 0 0 2 0 0 2 2 0 0 1 2 3 2 0 1 1 0 0 20 0 2295.1271 B4DSV5;B3KXZ4;H0Y8E6;P49736;Q9BWF4 B4DSV5 507 526 MCM2 DNA helicase;DNA replication licensing factor MCM2 yes no 2 2.0058E-12 146 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5957100 5957100 0 5957100 5957100 0 0 0 0 13554 790 13912 49285;49286;49287 74323;74324;74325;74326 74323 4 YDPTIEDSYRK SALTVQFVQGIFVEKYDPTIEDSYRKQVEV FVEKYDPTIEDSYRKQVEVDCQQCMLEILD K Y D R K Q 0 1 0 2 0 0 1 0 0 1 0 1 0 0 1 1 1 0 2 0 0 0 11 1 1385.6463 Q5U0C3;A8KAH9;A0A024RB87;P62834;P61224;F5H4H0;F5GYH7;F5H077;F5GWU8;F5H491;F5H0B7;F5H500;F5H6R7;F5H004;A0A075B6Q0;F5GYB5;F5GX62;Q9BXV4;E7ESV4;F5H7Y6 Q5U0C3 32 42 RAP1A;RAP1B Ras-related protein Rap-1A;Ras-related protein Rap-1b yes no 2 0.018102 71.451 2 0.67171 0.88464 12.327 2 Median 0.67171 0.88464 12.327 2 0 Median NaN NaN NaN 0 0 Median 13712000 8738300 4973500 13712000 8738300 4973500 0 0 0 13555 265 13913 49288;49289 74327;74328 74328 2 YDSLLEQGLVEAALVSK KPENKARRNRKRSIKYDSLLEQGLVEAALV SLLEQGLVEAALVSKISSPSDKKIPAKKES K Y D S K I 2 0 0 1 0 1 2 1 0 0 4 1 0 0 0 2 0 0 1 2 0 0 17 0 1833.9724 O96028;Q05CW4;D6R9V2;D6RIS1 O96028 175 191 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 2 1.4997E-44 201.08 4 0.86099 1.0759 5.9686 4 Median 0.86099 1.0759 5.9686 4 0 Median NaN NaN NaN 0 0 Median 70650000 38487000 32163000 70650000 38487000 32163000 0 0 0 13556 1228 13914 49290;49291;49292;49293 74329;74330;74331;74332;74333;74334;74335 74332 7 YDTALNLLK SDFCLKLEEGLVNNKYDTALNLLKESGPSG GLVNNKYDTALNLLKESGPSGIETELRSLS K Y D L K E 1 0 1 1 0 0 0 0 0 0 3 1 0 0 0 0 1 0 1 0 0 0 9 0 1049.5757 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 784 792 WDR36 WD repeat-containing protein 36 yes no 2 0.0018186 110.12 4 2 0.74381 1.1176 5.8581 4 Linear 0.81667 1.0176 5.5647 2 0 Median 0.69412 1.1011 3.1369 2 0 Median 116220000 67805000 48410000 46437000 27670000 18767000 69778000 40135000 29643000 13557 404 13915 49294;49295;49296;49297;49298;49299 74336;74337;74338;74339;74340;74341;74342;74343;74344;74345 74337 10 YDTVLDILR CNSMVLFDHVGCLKKYDTVLDILRDFFELR VGCLKKYDTVLDILRDFFELRLKYYGLRKE K Y D L R D 0 1 0 2 0 0 0 0 0 1 2 0 0 0 0 0 1 0 1 1 0 0 9 0 1106.5972 P11388 P11388 1012 1020 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0013958 111.74 4 1 0.87453 1.1648 7.4937 2 Median 0.87453 1.1648 7.4937 2 0 Median NaN NaN NaN 0 0 Median 33800000 27150000 6650400 23427000 16776000 6650400 10373000 10373000 0 13558 1256 13916 49300;49301;49302;49303;49304 74346;74347;74348;74349;74350;74351 74347 6 YDVSEFCSYIK LRHDPDLHMHQGYDKYDVSEFCSYIKSSSS GYDKYDVSEFCSYIKSSSSLGNATSDEDPN K Y D I K S 0 0 0 1 1 0 1 0 0 1 0 1 0 1 0 2 0 0 2 1 0 0 11 0 1409.6173 E9PEI0;Q69YH5;A8K8Z0;B3KRS8 E9PEI0 639 649 CDCA2 Cell division cycle-associated protein 2 yes no 2 0.014159 44.425 1 0.31985 0.43769 NaN 1 Median NaN NaN NaN 0 0 Median 0.31985 0.43769 NaN 1 0 Median 3563200 2426700 1136500 0 0 0 3563200 2426700 1136500 13559 1023 13917 49305 74352 74352 1 YDVYLINPQGK TRKLKQRKSGRSAGKYDVYLINPQGKAFRS SAGKYDVYLINPQGKAFRSKVELIAYFEKV K Y D G K A 0 0 1 1 0 1 0 1 0 1 1 1 0 0 1 0 0 0 2 1 0 0 11 0 1308.6714 A0A140VKC4;D9ZNA4;D5L9I5;D3YJ43;D0UU70;A8K079;E9LUH4;P51608;E1B2J3;E9LUH3;C6KG45;D6QZ43;A0A087X1U4;C6KG44;A0A087WVW7;B5MCB4;I6LM39;A0A0S2Z401;A0A0D9SFX7;D5L9I4;A0A0S2Z3U3 A0A140VKC4 132 142 MECP2 Methyl-CpG-binding protein 2 yes no 2 0.0013879 69.954 2 0.4432 0.61697 9.8328 2 Median NaN NaN NaN 0 0 Median 0.4432 0.61697 9.8328 2 0 Median 8260800 5621600 2639200 0 0 0 8260800 5621600 2639200 13560 512 13918 49306;49307 74353;74354;74355 74353 3 YDYNSGEELESYK KEFLVAGGEDFKLYKYDYNSGEELESYKGH YKYDYNSGEELESYKGHFGPIHCVRFSPDG K Y D Y K G 0 0 1 1 0 0 3 1 0 0 1 1 0 0 0 2 0 0 3 0 0 0 13 0 1595.6627 Q9Y3F4;B0AZV0;H0YH33 Q9Y3F4 250 262 STRAP Serine-threonine kinase receptor-associated protein yes no 2 3.7417E-12 154.15 4 1 0.43005 0.54597 11.993 3 Median 0.43005 0.54597 11.993 3 0 Median NaN NaN NaN 0 0 Median 31782000 21731000 10051000 28925000 21731000 7194200 2856500 0 2856500 13561 1818 13919 49308;49309;49310;49311;49312 74356;74357;74358;74359;74360;74361;74362;74363;74364 74359 9 YEAIYPETAAILGYCR YKNHPLYALKRHLLKYEAIYPETAAILGYC EAIYPETAAILGYCRGEAVYSRDCVHTLHS K Y E C R G 3 1 0 0 1 0 2 1 0 2 1 0 0 0 1 0 1 0 3 0 0 0 16 0 1888.9029 A0A024R2M8;X5DRB1;A8K146;Q01831;D9I4E1;D2CPK7;D2CPK0;D2CPI8 A0A024R2M8 656 671 XPC DNA repair protein complementing XP-C cells no no 2 4.8874E-09 121.02 4 1 0.77526 1.0495 15.041 4 Median 0.84849 1.1412 11.03 3 0 Median 0.57688 0.85974 NaN 1 0 Median 60204000 29192000 31012000 52672000 24367000 28305000 7531900 4825000 2706900 13562 89;976 13920 49313;49314;49315;49316;49317 74365;74366;74367;74368;74369;74370;74371 74370 7 YEALQTFAR ENSSMRLELDALRSKYEALQTFARTVARGP DALRSKYEALQTFARTVARGPVAPSKVATT K Y E A R T 2 1 0 0 0 1 1 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 9 0 1097.5506 A0A024R804;A8WFP5;O60675;A0A024R8X1;O15525 A0A024R804 111 119 MAFK;hCG_1991559;MAFG Transcription factor MafK;Transcription factor MafG no no 2 0.013614 90.601 1 1 1.4667 1.974 NaN 1 Median NaN NaN NaN 0 0 Median 1.4667 1.974 NaN 1 0 Median 7500900 4904800 2596100 2195500 2195500 0 5305300 2709200 2596100 13563 188;207 13921 49318;49319 74372;74373;74374;74375 74375 4 YEDAYQYQNIFGPLVK EKPGVDEEPQHVLLRYEDAYQYQNIFGPLV EDAYQYQNIFGPLVKLEADYDKKLKESQTQ R Y E V K L 1 0 1 1 0 2 1 1 0 1 1 1 0 1 1 0 0 0 3 1 0 0 16 0 1946.9414 A0A024R7L5;A0A024R7L8;Q92900 A0A024R7L5 296 311 UPF1 Regulator of nonsense transcripts 1 yes no 2 6.6689E-10 128.08 4 0.4274 0.53478 15.182 4 Median 0.4274 0.53478 15.182 4 0 Median NaN NaN NaN 0 0 Median 19039000 12984000 6055000 19039000 12984000 6055000 0 0 0 13564 180 13922 49320;49321;49322;49323 74376;74377;74378;74379;74380;74381 74376 6 YEDFSNLGTTHLLR SPVSRIGLFIKAGSRYEDFSNLGTTHLLRL RYEDFSNLGTTHLLRLTSSLTTKGASSFKI R Y E L R L 0 1 1 1 0 0 1 1 1 0 3 0 0 1 0 1 2 0 1 0 0 0 14 0 1664.8158 H3BSJ9;H3BRG4;P22695;H3BUE4;H3BUI9;H3BP04;A0A087WVZ4 H3BSJ9 71 84 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes no 3 0.0054439 36.631 2 0.61485 0.86983 13.961 2 Median NaN NaN NaN 0 0 Median 0.61485 0.86983 13.961 2 0 Median 20791000 12548000 8242400 0 0 0 20791000 12548000 8242400 13565 1108 13923 49324;49325 74382;74383;74384 74382 3 YEDGIEVNQEIVVITTK AICYGAKIMLPGVLRYEDGIEVNQEIVVIT DGIEVNQEIVVITTKGEAICMAIALMTTAV R Y E T K G 0 0 1 1 0 1 3 1 0 3 0 1 0 0 0 0 2 0 1 3 0 0 17 0 1948.9993 O60832;H7C2Q2 O60832 323 339 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 4.8237E-34 187.16 4 0.67979 0.8546 6.2497 4 Median 0.67979 0.8546 6.2497 4 0 Median NaN NaN NaN 0 0 Median 59721000 34279000 25442000 59721000 34279000 25442000 0 0 0 13566 1193 13924 49326;49327;49328;49329 74385;74386;74387;74388;74389;74390;74391;74392;74393 74387 9 YEEIVK VNKMDSTEPPYSQKRYEEIVKEVSTYIKKI TEPPYSQKRYEEIVKEVSTYIKKIGYNPDT R Y E V K E 0 0 0 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 6 0 779.40652 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;P68104;A8K9C4;Q5VTE0;Q96RE1;A0A087WVQ9;Q53GE9;Q53GA1;B4DV42;Q8IUB0;Q504Z0;Q53HR1;Q9NZS6;A0A087WV01;Q9H2I7;Q53G89;B4E2C5;Q16577;A9X7H1 Q6IPT9 167 172 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1 Elongation factor 1-alpha;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 2 0.035021 94.669 1 0.37556 0.47535 NaN 1 Median 0.37556 0.47535 NaN 1 0 Median NaN NaN NaN 0 0 Median 64359000 47400000 16959000 64359000 47400000 16959000 0 0 0 13567 1421 13925 49330 74394;74395;74396 74396 3 YEELQITAGR AQKSKAEAESLYQSKYEELQITAGRHGDSV LYQSKYEELQITAGRHGDSVRNSKIEISEL K Y E G R H 1 1 0 0 0 1 2 1 0 1 1 0 0 0 0 0 1 0 1 0 0 0 10 0 1178.5932 H6VRG3;H6VRG0;H6VRF8;H6VRG1;P04264;CON__P04264;H6VRF9;H6VRG2 H6VRG3 377 386 KRT1 Keratin, type II cytoskeletal 1 no no 2 2.6104E-32 200.86 3 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1507500000 1507500000 0 946310000 946310000 0 561160000 561160000 0 + 13568 1113;1114 13926 49331;49332;49333;49334;49335;49336 74397;74398;74399;74400;74401;74402;74403 74397 7 YEELQQTAGR ANRSRTEAESWYQTKYEELQQTAGRHGDDL WYQTKYEELQQTAGRHGDDLRNTKHEISEM K Y E G R H 1 1 0 0 0 2 2 1 0 0 1 0 0 0 0 0 1 0 1 0 0 0 10 0 1193.5677 CON__P13647;P13647;B4E1T1;B4DL32;H0YI76;H0YIN9 CON__P13647 365 374 KRT5 Keratin, type II cytoskeletal 5 no no 2 2.3938E-21 183.65 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39502000 39502000 0 23337000 23337000 0 16164000 16164000 0 + 13569 961 13927 49337;49338 74404;74405 74404 2 YEELQSLAGK ANRSRAEAESMYQIKYEELQSLAGKHGDDL MYQIKYEELQSLAGKHGDDLRRTKTEISEM K Y E G K H 1 0 0 0 0 1 2 1 0 0 2 1 0 0 0 1 0 0 1 0 0 0 10 0 1136.5714 CON__P05787;P05787;Q969I0;Q7L4M3;CON__H-INV:HIT000292931 CON__P05787 286 295 KRT8 Keratin, type II cytoskeletal 8 yes no 2 2.1297E-13 187 4 2 0.22227 0.28904 127.14 6 Median 0.21537 0.28089 9.1812 4 0 Median 2.0123 3.1891 0.56047 2 0 Median 421310000 312170000 109140000 348630000 288610000 60012000 72680000 23555000 49126000 + 13570 955 13928 49339;49340;49341;49342;49343;49344 74406;74407;74408;74409;74410;74411;74412;74413;74414;74415;74416 74406 11 YEELQVTAGK AQRSRAEAEAWYQTKYEELQVTAGKHGDNL WYQTKYEELQVTAGKHGDNLRDTKNEIAEL K Y E G K H 1 0 0 0 0 1 2 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 10 0 1136.5714 CON__Q5XKE5;Q5XKE5 CON__Q5XKE5 341 350 KRT79 Keratin, type II cytoskeletal 79 no no 2 2.4809E-05 105.52 1 1 0.66167 0.94363 172.78 2 Median 0.21284 0.27811 NaN 1 0 Median 2.057 3.2017 NaN 1 0 Median 139410000 98914000 40497000 106520000 87896000 18626000 32888000 11017000 21870000 + 13571 972 13929 49345;49346 74417;74418 74418 2 YEELQVTAGR AQRSRAEAESWYQTKYEELQVTAGRHGDDL WYQTKYEELQVTAGRHGDDLRNTKQEIAEI K Y E G R H 1 1 0 0 0 1 2 1 0 0 1 0 0 0 0 0 1 0 1 1 0 0 10 0 1164.5775 B4DRR0;CON__P02538;A8K2I0;A0A0S2Z428;P02538;B4DRU6;CON__P48668;B2R853;P48668;B4DWU6;B4DRY0;CON__P04259;B4DKV4;CON__O95678;O95678 B4DRR0 331 340 KRT6A;KRT6C;KRT75 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 75 no no 2 7.9336E-05 126.24 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14665000 14665000 0 14665000 14665000 0 0 0 0 + 13572 459;953;946 13930 49347;49348 74419;74420 74420 2 YEHVLEALNDYK RLHPGELADTPKSERYEHVLEALNDYKTMF SERYEHVLEALNDYKTMFMSGKEIKKKKHL R Y E Y K T 1 0 1 1 0 0 2 0 1 0 2 1 0 0 0 0 0 0 2 1 0 0 12 0 1492.7198 B4DZG1;Q9Y483;Q96G26;B4DZ69 B4DZG1 215 226 MTF2 Metal-response element-binding transcription factor 2 yes no 3 0.02077 55.261 1 0.68833 0.87117 NaN 1 Median 0.68833 0.87117 NaN 1 0 Median NaN NaN NaN 0 0 Median 5538900 3385300 2153600 5538900 3385300 2153600 0 0 0 13573 878 13931 49349 74421 74421 1 YEILTPNSIPK QGFPNRVVFQEFRQRYEILTPNSIPKGFMD FRQRYEILTPNSIPKGFMDGKQACVLMIKA R Y E P K G 0 0 1 0 0 0 1 0 0 2 1 1 0 0 2 1 1 0 1 0 0 0 11 0 1273.6918 A0A024R1N1;P35579;Q86XU5;B4E3S1;A0A0U4BW16 A0A024R1N1 721 731 MYH9 Myosin-9 no no 2 0.0040889 83.647 3 1 1.0178 1.2998 2.8768 3 Median 1.0178 1.2998 2.8768 3 0 Median NaN NaN NaN 0 0 Median 43847000 20273000 23574000 40150000 20273000 19877000 3696800 0 3696800 13574 61;490 13932 49350;49351;49352;49353 74422;74423;74424;74425 74424 4 YEITEQR PRHQEGEIFDTEKEKYEITEQRKIDQKAVD IFDTEKEKYEITEQRKIDQKAVDSQILPKI K Y E Q R K 0 1 0 0 0 1 2 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 7 0 937.45051 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;B4DRX3 Q8TBK5 240 246 RPL6 60S ribosomal protein L6 yes no 2 0.0088523 88.029 1 1 0.66688 0.91189 NaN 1 Median 0.66688 0.91189 NaN 1 0 Median NaN NaN NaN 0 0 Median 68260000 45481000 22779000 58978000 36199000 22779000 9282000 9282000 0 13575 277 13933 49354;49355 74426;74427;74428 74428 3 YELGRPAANTK RKTGGKRKPYHKKRKYELGRPAANTKIGPR KKRKYELGRPAANTKIGPRRIHTVRVRGGN K Y E T K I 2 1 1 0 0 0 1 1 0 0 1 1 0 0 1 0 1 0 1 0 0 0 11 1 1218.6357 Q5JR94;P62241;Q5JR95 Q5JR94 27 37 RPS8 40S ribosomal protein S8 yes no 2;3 3.2214E-28 198.93 8 4 0.88783 1.1682 44.889 12 Median 0.90976 1.2038 8.2752 8 0 Median 0.28322 0.49084 4.1646 4 0 Median 3842100000 2208900000 1633300000 3171900000 1693300000 1478600000 670270000 515600000 154670000 13576 1399 13934 49356;49357;49358;49359;49360;49361;49362;49363;49364;49365;49366;49367 74429;74430;74431;74432;74433;74434;74435;74436;74437;74438;74439;74440;74441;74442;74443;74444;74445;74446;74447;74448;74449;74450;74451;74452 74450 24 YELISETGGSHDK KNPVMELNEKRRGLKYELISETGGSHDKRF LKYELISETGGSHDKRFVMEVEVDGQKFQG K Y E D K R 0 0 0 1 0 0 2 2 1 1 1 1 0 0 0 2 1 0 1 0 0 0 13 0 1434.6627 F4ZW64;A8K590;F4ZW65;A0A024R7C7;F4ZW66;Q12906;B4DFG4;B4DDF3;A0A0S2Z5K8;V9HWK4;Q96SI9 F4ZW64 541 553 ILF3;HEL162;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein yes no 2 0.039248 29.534 1 1.1345 1.4054 NaN 1 Median 1.1345 1.4054 NaN 1 0 Median NaN NaN NaN 0 0 Median 2674400 1341100 1333300 2674400 1341100 1333300 0 0 0 13577 175 13935 49368 74453 74453 1 YELQLANPK WNYNFMGVRHDPNMKYELQLANPKEFYHEV HDPNMKYELQLANPKEFYHEVHRPSHFLNF K Y E P K E 1 0 1 0 0 1 1 0 0 0 2 1 0 0 1 0 0 0 1 0 0 0 9 0 1074.571 Q6P2Q9;B4DK16;Q53GM6 Q6P2Q9 2294 2302 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.00028642 101.28 2 1 0.95825 1.245 55.463 2 Median 0.65842 0.84111 NaN 1 0 Median 1.3946 1.8429 NaN 1 0 Median 7092100 3835700 3256400 4161200 2388500 1772700 2930900 1447300 1483700 13578 1592 13936 49369;49370;49371 74454;74455;74456;74457 74456 4 YENEVALR QIDNARLAADDFRLKYENEVALRQSVEADI ADDFRLKYENEVALRQSVEADINGLRRVLD K Y E L R Q 1 1 1 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 8 0 992.49271 CON__P13645;P13645 CON__P13645 238 245 KRT10 Keratin, type I cytoskeletal 10 yes no 2 2.6338E-06 138.83 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 283730000 283730000 0 283730000 283730000 0 0 0 0 + 13579 960 13937 49372;49373;49374;49375 74458;74459;74460;74461 74458 4 YESLTDPSK RELISNASDALDKIRYESLTDPSKLDSGKE ALDKIRYESLTDPSKLDSGKELKIDIIPNP R Y E S K L 0 0 0 1 0 0 1 0 0 0 1 1 0 0 1 2 1 0 1 0 0 0 9 0 1038.487 A0A024RD80;P08238;B4DMA2;Q6PK50;Q58FF7;O14942;Q58FF8;K9JA46;P07900;Q2VPJ6;G3V2J8;B4DTA5;Q86SX1;Q58FF6 A0A024RD80 56 64 HSP90AB1;HSP90AB3P;HSP90AB2P;EL52;HSP90AA1;HSP90AB4P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4 no no 2 0.0044739 75.378 1 0.36808 0.47425 NaN 1 Median 0.36808 0.47425 NaN 1 0 Median NaN NaN NaN 0 0 Median 4889000 3472200 1416800 4889000 3472200 1416800 0 0 0 13580 312;1155;1551;1550 13938 49376 74462;74463 74463 2 YESSSYTDQFSR VEKQASRDLEQPTYRYESSSYTDQFSRNYE TYRYESSSYTDQFSRNYEHRLRYEDRVPMY R Y E S R N 0 1 0 1 0 1 1 0 0 0 0 0 0 1 0 4 1 0 2 0 0 0 12 0 1468.6107 A0A087X0K9;Q6MZU1;G5E9E7;A9CQZ8;G3V1L9;Q07157;Q68DX9;B4DZK4;Q9H317 A0A087X0K9 969 980 TJP1;DKFZp686A1195;DKFZp686M05161 Tight junction protein ZO-1 yes no 2 0.0013284 63.624 1 0.9204 1.2407 NaN 1 Median 0.9204 1.2407 NaN 1 0 Median NaN NaN NaN 0 0 Median 2199200 991480 1207700 2199200 991480 1207700 0 0 0 13581 371 13939 49377 74464;74465 74464 2 YETELAMR QIDNARLAADDFRVKYETELAMRQSVENDI ADDFRVKYETELAMRQSVENDIHGLRKVID K Y E M R Q 1 1 0 0 0 0 2 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 8 0 1011.4695 F8VZY9;B2RA03;A0A024RAY2;P05783;I6L965;CON__P05784 F8VZY9 168 175 KRT18 Keratin, type I cytoskeletal 18 no no 2 0.0052861 75.109 1 2 1.8122 2.8705 3.799 2 Median NaN NaN NaN 0 0 Median 1.8122 2.8705 3.799 2 0 Median 70873000 24770000 46103000 0 0 0 70873000 24770000 46103000 + 13582 252;954 13940;13941 49378;49379;49380 74466;74467;74468;74469;74470 74467 102 5 YETELNLR QIDNARLAADDFRTKYETELNLRMSVEADI ADDFRTKYETELNLRMSVEADINGLRRVLD K Y E L R M 0 1 1 0 0 0 2 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 8 0 1036.5189 CON__P02533;P02533 CON__P02533 204 211 KRT14 Keratin, type I cytoskeletal 14 no no 2 0.0045437 80.229 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25039000 25039000 0 0 0 0 25039000 25039000 0 + 13583 949 13942 49381 74471 74471 1 YETIHLTEEPTK SESEEKLDQKEDGSKYETIHLTEEPTKLMH GSKYETIHLTEEPTKLMHNASDSEVDQDDV K Y E T K L 0 0 0 0 0 0 3 0 1 1 1 1 0 0 1 0 3 0 1 0 0 0 12 0 1459.7195 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 936 947 ADNP Activity-dependent neuroprotector homeobox protein yes no 2;3 0.00020865 113.67 4 2 0.90005 1.2188 28.001 6 Median 0.7724 0.98074 21.283 4 0 Median 1.1024 1.6508 9.1878 2 0 Median 41776000 21857000 19919000 22892000 12372000 10520000 18885000 9485300 9399400 13584 729 13943 49382;49383;49384;49385;49386;49387 74472;74473;74474;74475;74476;74477;74478;74479;74480;74481 74477 10 YEVGLPTLCCLK MELREQELMKIVGIKYEVGLPTLCCLKLAF GIKYEVGLPTLCCLKLAFLDPDTGKLTGGS K Y E L K L 0 0 0 0 2 0 1 1 0 0 3 1 0 0 1 0 1 0 1 1 0 0 12 0 1451.7153 Q8WWQ0 Q8WWQ0 1011 1022 PHIP PH-interacting protein yes yes 2 0.00035656 76.228 1 2 0.89513 1.1288 41.738 3 Plateau 0.92665 1.1563 NaN 1 0 Median 0.37549 0.56157 2.5384 2 0 Median 74873000 44077000 30796000 50065000 26451000 23615000 24807000 17626000 7181300 13585 1668 13944 49388;49389;49390 74482;74483;74484 74482 3 YEVLENK TLKNTKEIQRKAEEKYEVLENKMKNAEAER IQRKAEEKYEVLENKMKNAEAERERELKDA K Y E N K M 0 0 1 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 7 0 893.44945 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;B3KM27 A0A024R158 773 779 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.017209 107.43 3 2 0.70032 0.93143 4.6739 5 Median 0.71177 0.90756 4.153 3 0 Median 0.61367 0.96334 4.7635 2 0 Median 218090000 127360000 90731000 155440000 88402000 67039000 62647000 38955000 23692000 13586 50 13945 49391;49392;49393;49394;49395 74485;74486;74487;74488;74489;74490;74491 74491 7 YEWDVAEAR ARQELKQRARYLAEKYEWDVAEARKIWCFG RYLAEKYEWDVAEARKIWCFGPDGTGPNIL K Y E A R K 2 1 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 9 0 1137.5091 P13639;Q8TA90;B4DPU3;Q6W6M8 P13639 639 647 EEF2 Elongation factor 2 yes no 2 0.020768 80.219 2 7.14 10.061 7.6547 2 Median NaN NaN NaN 0 0 Median 7.14 10.061 7.6547 2 0 Median 21276000 3149700 18126000 0 0 0 21276000 3149700 18126000 13587 1264 13946 49396;49397 74492;74493 74492 1 YFAEALGPLQSFQARPDDLLINTYPK SRPPLEYVKGVPLIKYFAEALGPLQSFQAR FQARPDDLLINTYPKSGTTWVSQILDMIYQ K Y F P K S 3 1 1 2 0 2 1 1 0 1 4 1 0 2 3 1 1 0 2 0 0 0 26 1 2966.5178 Q2TAB3;Q1ET65;Q1ET64;Q1ET63;Q1ET62;Q1ET61;A0A0A6YYL2;P0DMN0;P0DMM9;H3BNY7;B3KT14 Q2TAB3 23 48 SULT1A4;ST1A5;SULT1A3 Sulfotransferase;Sulfotransferase 1A4;Sulfotransferase 1A3 yes no 3 0.0027516 45.659 1 0.2187 0.28351 NaN 1 Median 0.2187 0.28351 NaN 1 0 Median NaN NaN NaN 0 0 Median 1500000 1203100 296870 1500000 1203100 296870 0 0 0 13588 410 13947 49398 74494 74494 1 YFDPANGK AKKVEDMMKKLWGDRYFDPANGKFSKSATS KKLWGDRYFDPANGKFSKSATSPEGKKLPR R Y F G K F 1 0 1 1 0 0 0 1 0 0 0 1 0 1 1 0 0 0 1 0 0 0 8 0 910.41848 P13639;Q6PK56;B4DRE8;B4DMC6 P13639 265 272 EEF2 Elongation factor 2 yes no 2 0.027515 53.679 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3086800 0 3086800 0 0 0 3086800 0 3086800 13589 1264 13948 49399;49400 74495;74496 74496 2 YFEGVSPK YKLLSITVRNAKKIKYFEGVSPKSLKHSPE RNAKKIKYFEGVSPKSLKHSPEDPEKYSCF K Y F P K S 0 0 0 0 0 0 1 1 0 0 0 1 0 1 1 1 0 0 1 1 0 0 8 0 925.45453 P78527;B4DL41 P78527 682 689 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.010229 81.784 3 0.41478 0.51731 14.229 2 Median 0.41478 0.51731 14.229 2 0 Median NaN NaN NaN 0 0 Median 44883000 35892000 8991100 44883000 35892000 8991100 0 0 0 13590 1427 13949 49401;49402;49403 74497;74498;74499 74499 3 YFEIQFSPGGEPDGGK NAKTVRNNNSSRFGKYFEIQFSPGGEPDGG FEIQFSPGGEPDGGKISNFLLEKSRVVMRN K Y F G K I 0 0 0 1 0 1 2 4 0 1 0 1 0 2 2 1 0 0 1 0 0 0 16 0 1726.7839 Q4KMR3;Q12965;H0YLJ4 Q4KMR3 173 188 MYO1E Unconventional myosin-Ie yes no 2 6.4499E-07 103.88 5 0.54819 0.70477 0.18607 2 Median 0.54819 0.70477 0.18607 2 0 Median NaN NaN NaN 0 0 Median 33128000 26304000 6824100 33128000 26304000 6824100 0 0 0 13591 1459 13950 49404;49405;49406;49407;49408 74500;74501;74502;74503;74504;74505;74506;74507 74507 8 YFEITDESPYVHYLNTFSSK TSIIYLCGKGDSSIRYFEITDESPYVHYLN DESPYVHYLNTFSSKEPQRGMGYMPKRGLD R Y F S K E 0 0 1 1 0 0 2 0 1 1 1 1 0 2 1 3 2 0 3 1 0 0 20 0 2439.1271 B4DMH3;Q53G58;B3KN06;A0A024RBI5;Q59EA2;Q9ULV4;B7Z9V0;B4E3S0 B4DMH3 255 274 CORO1C Coronin;Coronin-1C yes no 3 4.9133E-26 165.16 4 1.4774 1.9126 7.4526 4 Median 1.4774 1.9126 7.4526 4 0 Median NaN NaN NaN 0 0 Median 592500000 235220000 357290000 592500000 235220000 357290000 0 0 0 13592 274 13951 49409;49410;49411;49412 74508;74509;74510;74511;74512;74513;74514 74510 7 YFEITEEPPYIHFLNTFTSK TSVVYVCGKGDSSIRYFEITEEPPYIHFLN EEPPYIHFLNTFTSKEPQRGMGSMPKRGLE R Y F S K E 0 0 1 0 0 0 3 0 1 2 1 1 0 3 2 1 3 0 2 0 0 0 20 0 2475.1998 A0A024R5K1;Q9BR76;Q9NSK3 A0A024R5K1 294 313 CORO1B;DKFZp762I166 Coronin;Coronin-1B yes no 3 0.0001092 57.496 4 0.84987 1.0732 14.821 4 Median 0.84987 1.0732 14.821 4 0 Median NaN NaN NaN 0 0 Median 47866000 25947000 21919000 47866000 25947000 21919000 0 0 0 13593 145 13952 49413;49414;49415;49416 74515;74516;74517;74518;74519;74520 74519 6 YFLASLDR GALHFRLGNLGEAKKYFLASLDRAKAEAEH NLGEAKKYFLASLDRAKAEAEHDEHYYNAI K Y F D R A 1 1 0 1 0 0 0 0 0 0 2 0 0 1 0 1 0 0 1 0 0 0 8 0 983.50763 A8K6X9;Q6PD62 A8K6X9 473 480 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2 0.020283 57.281 2 2 0.62501 0.83301 3.0451 2 Median 0.62501 0.83301 3.0451 2 0 Median NaN NaN NaN 0 0 Median 30686000 15620000 15066000 25917000 15620000 10298000 4768500 0 4768500 13594 629 13953 49417;49418;49419;49420 74521;74522;74523;74524;74525;74526 74521 6 YFLVGAGAIGCELLK AVFGSDLQEKLGKQKYFLVGAGAIGCELLK YFLVGAGAIGCELLKNFAMIGLGCGEGGEI K Y F L K N 2 0 0 0 1 0 1 3 0 1 3 1 0 1 0 0 0 0 1 1 0 0 15 0 1609.8538 A0A024R1A3;P22314 A0A024R1A3 471 485 UBE1;UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 0.00024407 111.52 4 0.72203 0.88407 29.114 2 Median 0.72203 0.88407 29.114 2 0 Median NaN NaN NaN 0 0 Median 8800300 6814000 1986300 8800300 6814000 1986300 0 0 0 13595 55 13954 49421;49422;49423;49424 74527;74528;74529;74530;74531 74531 5 YFPTQALNFAFK GVLSFWRGNLANVIRYFPTQALNFAFKDKY VIRYFPTQALNFAFKDKYKQIFLGGVDKRT R Y F F K D 2 0 1 0 0 1 0 0 0 0 1 1 0 3 1 0 1 0 1 0 0 0 12 0 1445.7343 Q6NVC0;P05141;A0A0S2Z359;V9GYG0;A8K787;A0A0S2Z3H3;P12235;Q9H0C2;Q59EP7;Q6I9V5;Q59EI9;P12236 Q6NVC0 106 117 SLC25A5;SLC25A4;SLC25A31;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 2 3.7682E-05 120.31 4 0.55304 0.70763 4.2786 4 Median 0.55304 0.70763 4.2786 4 0 Median NaN NaN NaN 0 0 Median 70742000 46749000 23992000 70742000 46749000 23992000 0 0 0 13596 1234;1260 13955 49425;49426;49427;49428 74532;74533;74534;74535;74536;74537 74537 6 YFQIGTIVDNPADFYHSR PKRFYKKNDRDGFPKYFQIGTIVDNPADFY IGTIVDNPADFYHSRIPKKQRKRTIVEELL K Y F S R I 1 1 1 2 0 1 0 1 1 2 0 0 0 2 1 1 1 0 2 1 0 0 18 0 2142.0171 Q5QJE6 Q5QJE6 687 704 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 2;3 1.2171E-13 109.72 5 2 1.0185 1.6382 25.526 7 Median 0.9753 1.3379 29.722 5 0 Median 1.056 1.7215 7.0143 2 0 Median 452600000 237500000 215100000 295260000 162440000 132830000 157340000 75063000 82274000 13597 1561 13956 49429;49430;49431;49432;49433;49434;49435 74538;74539;74540;74541;74542;74543;74544;74545;74546;74547;74548;74549 74544 11 YFQINQDEEEEEDED WLRVVANSKESYELRYFQINQDEEEEEDED YFQINQDEEEEEDED_______________ R Y F E D - 0 0 1 3 0 2 6 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 15 0 1930.7228 K7ERI7;Q7Z4W8;P35268 Q7Z4W8 81 95 RPL22 60S ribosomal protein L22 no no 2 0.018987 41.399 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15638000 0 0 15638000 0 0 0 0 0 13598 1153;1319 13957 49436 74550 74550 1 YFTVTCYSGYGDDEK GFDGEYQDDSLDLLRYFTVTCYSGYGDDEK YFTVTCYSGYGDDEKGFYTVYRNVFEMIAK R Y F E K G 0 0 0 2 1 0 1 2 0 0 0 1 0 1 0 1 2 0 3 1 0 0 15 0 1803.7298 Q5F1R6 Q5F1R6 91 105 DNAJC21 DnaJ homolog subfamily C member 21 yes yes 2 8.0026E-08 158.42 4 0.98077 1.2601 9.1016 4 Median 0.98077 1.2601 9.1016 4 0 Median NaN NaN NaN 0 0 Median 19521000 9968600 9552100 19521000 9968600 9552100 0 0 0 13599 1556 13958 49437;49438;49439;49440 74551;74552;74553;74554;74555;74556;74557;74558;74559;74560;74561 74556 11 YGAEVISVLQK VLLQIDGVTEDKLEKYGAEVISVLQKYSEW KLEKYGAEVISVLQKYSEWTSPAEDSSPGI K Y G Q K Y 1 0 0 0 0 1 1 1 0 1 1 1 0 0 0 1 0 0 1 2 0 0 11 0 1205.6656 H0YNU5;B2RAN0;P54132;B7ZKN7;B7Z2X2;B7Z8C1 H0YNU5 1143 1153 BLM Bloom syndrome protein yes no 2 0.0014423 82.287 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2606300 2606300 0 2606300 2606300 0 0 0 0 13600 725 13959 49441 74562 74562 1 YGAFLLR RMLKRFRQEKAVWIKYGAFLLRRSQAAASH QEKAVWIKYGAFLLRRSQAAASHRVLQRAL K Y G L R R 1 1 0 0 0 0 0 1 0 0 2 0 0 1 0 0 0 0 1 0 0 0 7 0 838.47012 Q14690 Q14690 1731 1737 PDCD11 Protein RRP5 homolog yes yes 2 0.0085451 130.84 1 1.0408 1.3831 NaN 1 Median 1.0408 1.3831 NaN 1 0 Median NaN NaN NaN 0 0 Median 15217000 7392300 7825000 15217000 7392300 7825000 0 0 0 13601 1494 13960 49442 74563;74564 74563 2 YGALVICETSEQK GAMQSPSLHKLVLGKYGALVICETSEQKTN GKYGALVICETSEQKTNLEDVGRRLGQHVV K Y G Q K T 1 0 0 0 1 1 2 1 0 1 1 1 0 0 0 1 1 0 1 1 0 0 13 0 1496.7181 B4DHY8;E5KS95;P43897 B4DHY8 194 206 TSFM Elongation factor Ts, mitochondrial yes no 2 5.1339E-09 152.04 2 0.28642 0.36334 29.5 2 Median 0.28642 0.36334 29.5 2 0 Median NaN NaN NaN 0 0 Median 16367000 11613000 4754200 16367000 11613000 4754200 0 0 0 13602 809 13961 49443;49444 74565;74566 74565 2 YGASLLHTYAGPSLLVLGPR VYLNESSVLHTLRQRYGASLLHTYAGPSLL LHTYAGPSLLVLGPRGAPAVYSEKVMHMFK R Y G P R G 2 1 0 0 0 0 0 3 1 0 5 0 0 0 2 2 1 0 2 1 0 0 20 0 2084.1419 A0A0D9SFK2;A0A024QZ63;Q92614;B4E0T8;H0YEV9 A0A0D9SFK2 429 448 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 3 0.001058 30.094 1 0.50807 0.68118 NaN 1 Median 0.50807 0.68118 NaN 1 0 Median NaN NaN NaN 0 0 Median 5910400 3515900 2394500 5910400 3515900 2394500 0 0 0 13603 6 13962 49445 74567 74567 1 YGCEGPSHGGLPGASSEK LVIVEQPKQRGFRFRYGCEGPSHGGLPGAS EGPSHGGLPGASSEKGRKTYPTVKICNYEG R Y G E K G 1 0 0 0 1 0 2 5 1 0 1 1 0 0 2 3 0 0 1 0 0 0 18 0 1788.7737 D3DR86;A0A1P8C958;Q00653 D3DR86 55 72 NFKB2 Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit yes no 3 0.020507 20.368 1 0.78951 1.009 NaN 1 Median 0.78951 1.009 NaN 1 0 Median NaN NaN NaN 0 0 Median 4253000 2314600 1938400 4253000 2314600 1938400 0 0 0 13604 526 13963 49446 74568 74568 1 YGDGPRPPK RPSAAGINLMIGSTRYGDGPRPPKMARYDN MIGSTRYGDGPRPPKMARYDNGSGYRRGGS R Y G P K M 0 1 0 1 0 0 0 2 0 0 0 1 0 0 3 0 0 0 1 0 0 0 9 1 985.49813 Q08211;B3KU66 Q08211 1155 1163 DHX9 ATP-dependent RNA helicase A yes no 2 0.0077347 84.568 1 1 0.55265 0.76371 16.317 2 Median 0.65869 0.8571 NaN 1 0 Median 0.46368 0.68049 NaN 1 0 Median 16764000 10228000 6536300 13027000 7867600 5159400 3737000 2360200 1376900 13605 1448 13964 49447;49448 74569;74570 74569 2 YGDSLYR NLVDNVAKDYVRLMKYGDSLYRCKQLKRAA KDYVRLMKYGDSLYRCKQLKRAALGRMCTV K Y G Y R C 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 2 0 0 0 7 0 872.40283 Q53GS0;D2CFK9;Q9BZE4;Q8N4P8;B4DHR2;O60747;Q5T3R7 Q53GS0 119 125 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.016205 83.377 4 1 0.79809 1.0958 22.48 5 Median 0.82994 1.1363 18.01 4 0 Median 0.56925 0.85069 NaN 1 0 Median 325960000 178750000 147210000 310290000 169270000 141020000 15677000 9484100 6192600 13606 975 13965 49449;49450;49451;49452;49453 74571;74572;74573;74574;74575 74574 5 YGEDGLAGESVEFQNLATLKPSNK DATVRNSINQVVQLRYGEDGLAGESVEFQN SVEFQNLATLKPSNKAFEKKFRFDYTNERA R Y G N K A 2 0 2 1 0 1 3 3 0 0 3 2 0 1 1 2 1 0 1 1 0 0 24 1 2566.2551 P24928;A0A087WWE2 P24928 891 914 POLR2A DNA-directed RNA polymerase II subunit RPB1;DNA-directed RNA polymerase yes no 3 7.0293E-07 80.41 1 0.99366 1.2056 NaN 1 Median 0.99366 1.2056 NaN 1 0 Median NaN NaN NaN 0 0 Median 3615000 948080 2666900 3615000 948080 2666900 0 0 0 13607 1295 13966 49454 74576 74576 1 YGEPGEVFINK PADITEDEFKRLFAKYGEPGEVFINKGKGF LFAKYGEPGEVFINKGKGFGFIKLESRALA K Y G N K G 0 0 1 0 0 0 2 2 0 1 0 1 0 1 1 0 0 0 1 1 0 0 11 0 1251.6136 Q9BSV4;Q86VG2;P23246;Q6PIX2 Q9BSV4 247 257 SFPQ Splicing factor, proline- and glutamine-rich yes no 2 0.0001082 101.65 3 1 0.46422 0.58371 97.174 4 Median 0.45775 0.57342 2.4847 3 0 Median 2.735 4.0338 NaN 1 0 Median 41986000 25770000 16216000 36083000 24054000 12028000 5903000 1716000 4187000 13608 1292 13967 49455;49456;49457;49458 74577;74578;74579;74580;74581 74578 5 YGEYFPGTGDLR AFYTTDRVMTVSFHKYGEYFPGTGDLRDIG FHKYGEYFPGTGDLRDIGAGKGKYYAVNFP K Y G L R D 0 1 0 1 0 0 1 3 0 0 1 0 0 1 1 0 1 0 2 0 0 0 12 0 1373.6252 Q92769;B3KUJ5;Q6IT96;B5BU61;Q13547;Q5TEE2;B4DSK9;B4DRG0;B7Z3S4 Q92769 202 213 HDAC2;HDAC1 Histone deacetylase 2;Histone deacetylase;Histone deacetylase 1 no no 2 5.4614E-05 121.5 4 2 0.72746 0.99433 56.754 6 Median 0.71588 0.98049 2.1285 4 0 Median 1.7969 2.9235 9.3012 2 0 Median 366560000 185350000 181210000 221400000 124300000 97098000 145160000 61048000 84109000 13609 1675;894 13968 49459;49460;49461;49462;49463;49464 74582;74583;74584;74585;74586;74587;74588;74589;74590;74591;74592 74586 11 YGGDEIPFSPYR AYVPDVTGRYTILIKYGGDEIPFSPYRVRA LIKYGGDEIPFSPYRVRAVPTGDASKCTVT K Y G Y R V 0 1 0 1 0 0 1 2 0 1 0 0 0 1 2 1 0 0 2 0 0 0 12 0 1399.6408 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4 P21333 1622 1633 FLNA;FLJ00119 Filamin-A yes no 2 1.1005E-05 114.4 3 1.0721 1.448 3.2822 2 Median 1.0721 1.448 3.2822 2 0 Median NaN NaN NaN 0 0 Median 28772000 9117600 19654000 28772000 9117600 19654000 0 0 0 13610 1287 13969 49465;49466;49467 74593;74594;74595;74596;74597;74598;74599;74600 74598 8 YGGPYHIGGSPFK TYTPMAPGSYLISIKYGGPYHIGGSPFKAK IKYGGPYHIGGSPFKAKVTGPRLVSNHSLH K Y G F K A 0 0 0 0 0 0 0 4 1 1 0 1 0 1 2 1 0 0 2 0 0 0 13 0 1378.667 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61;B4E2F9;Q86TQ3 P21333 2501 2513 FLNA;FLJ00119 Filamin-A yes no 2 0.012363 31.286 1 0.90004 1.1363 NaN 1 Median 0.90004 1.1363 NaN 1 0 Median NaN NaN NaN 0 0 Median 9657000 4663900 4993200 9657000 4663900 4993200 0 0 0 13611 1287 13970 49468 74601 74601 1 YGIICMEDLIHEIYTVGK IALTDNALIARSLGKYGIICMEDLIHEIYT ICMEDLIHEIYTVGKRFKEANNFLWPFKLS K Y G G K R 0 0 0 1 1 0 2 2 1 4 1 1 1 0 0 0 1 0 2 1 0 0 18 0 2153.0537 A0A024R814;P18124;A8MUD9;O95036 A0A024R814 193 210 RPL7;WUGSC:H_RG054D04.1 60S ribosomal protein L7 yes no 3 4.3791E-39 144.73 10 0.67084 0.85753 35.303 8 Median 0.67084 0.85753 35.303 8 0 Median NaN NaN NaN 0 0 Median 435060000 273650000 161410000 435060000 273650000 161410000 0 0 0 13612 189 13971;13972 49469;49470;49471;49472;49473;49474;49475;49476;49477;49478 74602;74603;74604;74605;74606;74607;74608;74609;74610;74611;74612;74613;74614;74615 74614 86 14 YGIICMEDLIHEIYTVGKR IALTDNALIARSLGKYGIICMEDLIHEIYT CMEDLIHEIYTVGKRFKEANNFLWPFKLSS K Y G K R F 0 1 0 1 1 0 2 2 1 4 1 1 1 0 0 0 1 0 2 1 0 0 19 1 2309.1548 A0A024R814;P18124;A8MUD9;O95036 A0A024R814 193 211 RPL7;WUGSC:H_RG054D04.1 60S ribosomal protein L7 yes no 3;4 2.5739E-07 101.9 7 0.76788 0.99946 19.3 7 Median 0.76788 0.99946 19.3 7 0 Median NaN NaN NaN 0 0 Median 108180000 63266000 44909000 108180000 63266000 44909000 0 0 0 13613 189 13973 49479;49480;49481;49482;49483;49484;49485 74616;74617;74618;74619;74620;74621;74622;74623;74624;74625;74626 74621 11 YGISNEKPEVK PWMRKTEYISTEFNRYGISNEKPEVKIGVS EFNRYGISNEKPEVKIGVSVKQQFTEEEIY R Y G V K I 0 0 1 0 0 0 2 1 0 1 0 2 0 0 1 1 0 0 1 1 0 0 11 1 1262.6507 A0A024R0H6;Q8N7H5;B4DGJ5 A0A024R0H6 144 154 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2;3 2.6776E-18 182.16 5 0.65214 0.80757 17.647 5 Median 0.65214 0.80757 17.647 5 0 Median NaN NaN NaN 0 0 Median 73546000 42813000 30733000 73546000 42813000 30733000 0 0 0 13614 36 13974 49486;49487;49488;49489;49490 74627;74628;74629;74630;74631;74632;74633 74628 7 YGLGYQLCDNSVGVLFNDSTR IPIFWVSKWVDYSDKYGLGYQLCDNSVGVL LCDNSVGVLFNDSTRLILYNDGDSLQYIER K Y G T R L 0 1 2 2 1 1 0 3 0 0 3 0 0 1 0 2 1 0 2 2 0 0 21 0 2377.1009 B2R841;P53350;B4E083;Q59GD0;D3DWF3 B2R841 421 441 PLK1 Serine/threonine-protein kinase PLK;Serine/threonine-protein kinase PLK1 yes no 2 1.0437E-18 174.39 4 0.7375 1.0083 5.9227 3 Plateau 0.7375 1.0083 5.9227 3 0 Plateau NaN NaN NaN 0 0 Median 20561000 10010000 10551000 20561000 10010000 10551000 0 0 0 13615 714 13975 49491;49492;49493;49494 74634;74635;74636;74637;74638;74639;74640;74641;74642 74638 9 YGLIFHSTFIGR KALFRALKTRGNTPKYGLIFHSTFIGRAAA TPKYGLIFHSTFIGRAAAKNKGRISRYLAN K Y G G R A 0 1 0 0 0 0 0 2 1 2 1 0 0 2 0 1 1 0 1 0 0 0 12 0 1409.7456 A8K9K6;O00567;A0PJ92;H0YDU4;H0Y653 A8K9K6 348 359 NOP56 Nucleolar protein 56 yes no 2;3 1.9742E-27 157.75 7 2 0.64018 0.86917 11.778 7 Median 0.6709 0.91937 10.669 5 0 Median 0.4861 0.78454 1.615 2 0 Median 447090000 272160000 174930000 338400000 200460000 137950000 108690000 71701000 36984000 13616 647 13976 49495;49496;49497;49498;49499;49500;49501;49502;49503 74643;74644;74645;74646;74647;74648;74649;74650;74651;74652;74653;74654;74655 74647 13 YGLIYHASLVGQTSPK KALFRALKSRRDTPKYGLIYHASLVGQTSP GLIYHASLVGQTSPKHKGKISRMLAAKTVL K Y G P K H 1 0 0 0 0 1 0 2 1 1 2 1 0 0 1 2 1 0 2 1 0 0 16 0 1732.9148 Q9Y2X3;B3KN82 Q9Y2X3 338 353 NOP58 Nucleolar protein 58 yes no 2;3 3.3674E-25 161.25 9 3 0.71978 0.94397 12.945 11 Median 0.72366 0.95085 8.2486 8 0 Median 0.48942 0.78548 3.9183 3 0 Plateau 680430000 414760000 265670000 498490000 292170000 206320000 181940000 122590000 59353000 13617 1810 13977 49504;49505;49506;49507;49508;49509;49510;49511;49512;49513;49514;49515 74656;74657;74658;74659;74660;74661;74662;74663;74664;74665;74666;74667;74668;74669;74670;74671;74672;74673;74674 74663 19 YGLTLDPEADSEYLSR IARYKAERRRQLAEKYGLTLDPEADSEYLS GLTLDPEADSEYLSRYTKSRKEPDAVEKRG K Y G S R Y 1 1 0 2 0 0 2 1 0 0 3 0 0 0 1 2 1 0 2 0 0 0 16 0 1827.8527 O95425 O95425 120 135 SVIL Supervillin yes yes 2 0.0012569 56.094 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12306000 8271500 4034600 12306000 8271500 4034600 0 0 0 13618 1220 13978 49516;49517 74675;74676 74676 2 YGPIADVSIVYDQQSR SLYTTERDLREVFSKYGPIADVSIVYDQQS GPIADVSIVYDQQSRRSRGFAFVYFENVDD K Y G S R R 1 1 0 2 0 2 0 1 0 2 0 0 0 0 1 2 0 0 2 2 0 0 16 0 1809.8897 Q8N1H4;Q68DZ9;Q59GA1;B2RDQ3;P62995 Q8N1H4 105 120 DKFZp686F18120;TRA2B Transformer-2 protein homolog beta yes no 2 1.5155E-13 169.09 4 2 0.44273 0.60586 38.798 6 Median 0.42655 0.58959 8.0036 4 0 Median 0.77514 1.2123 4.0875 2 0 Median 318600000 218690000 99904000 264260000 187660000 76596000 54340000 31031000 23308000 13619 740 13979 49518;49519;49520;49521;49522;49523 74677;74678;74679;74680;74681;74682;74683;74684;74685;74686;74687;74688;74689 74683 13 YGPIVDVYVPLDFYTR ADDTRSEDLRREFGRYGPIVDVYVPLDFYT GPIVDVYVPLDFYTRRPRGFAYVQFEDVRD R Y G T R R 0 1 0 2 0 0 0 1 0 1 1 0 0 1 2 0 1 0 3 3 0 0 16 0 1915.972 Q5JRI1;Q53GD7;A0A0S2Z504;O75494;Q6IQ42 Q5JRI1 33 48 SRSF10;FUSIP1 Serine/arginine-rich splicing factor 10 yes no 2 6.8462E-18 113.61 2 0.42777 0.5735 6.1625 2 Median 0.42777 0.5735 6.1625 2 0 Median NaN NaN NaN 0 0 Median 38049000 25740000 12309000 38049000 25740000 12309000 0 0 0 13620 474 13980 49524;49525 74690;74691;74692 74692 3 YGPLSGVNVVYDQR SLYTTERDLREVFSRYGPLSGVNVVYDQRT RYGPLSGVNVVYDQRTGRSRGFAFVYFERI R Y G Q R T 0 1 1 1 0 1 0 2 0 0 1 0 0 0 1 1 0 0 2 3 0 0 14 0 1565.7838 Q549U1;Q13595 Q549U1 142 155 HSU53209;TRA2A Transformer-2 protein homolog alpha yes no 2 1.3008E-06 138.24 5 1 0.46117 0.61432 46.108 3 Median 0.42104 0.56093 12.857 2 0 Median 0.88059 1.2273 NaN 1 0 Median 62016000 48216000 13799000 53119000 43764000 9354600 8896500 4451600 4444900 13621 1472 13981 49526;49527;49528;49529;49530;49531 74693;74694;74695;74696;74697;74698;74699;74700;74701 74698 9 YGQFSGLNPGGRPITPPR CSFQILKPADKNKGKYGQFSGLNPGGRPIT FSGLNPGGRPITPPRNSAKAKK________ K Y G P R N 0 2 1 0 0 1 0 4 0 1 1 0 0 1 4 1 1 0 1 0 0 0 18 1 1912.9908 P62136;A0A140VJS9;C0STL0 P62136 306 323 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit yes no 3 4.3386E-09 65.107 3 2 0.81814 1.1184 7.2175 5 Median 0.83221 1.1291 0.94146 3 0 Median 0.67447 1.0106 7.6984 2 0 Median 136290000 75543000 60752000 100460000 54777000 45684000 35833000 20766000 15068000 13622 1396 13982 49532;49533;49534;49535;49536 74702;74703;74704;74705;74706;74707 74705 6 YGQLIEINSHSLFSK ALAQKLTIRLSSRYRYGQLIEINSHSLFSK YGQLIEINSHSLFSKWFSESGKLVTKMFQK R Y G S K W 0 0 1 0 0 1 1 1 1 2 2 1 0 1 0 3 0 0 1 0 0 0 15 0 1734.8941 Q15645;H0YAL2 Q15645 206 220 TRIP13 Pachytene checkpoint protein 2 homolog yes no 2;3 1.3674E-07 83.729 3 0.31508 0.38512 NaN 1 Median 0.31508 0.38512 NaN 1 0 Median NaN NaN NaN 0 0 Median 39834000 35132000 4701300 39834000 35132000 4701300 0 0 0 13623 1514 13983 49537;49538;49539 74708;74709;74710 74710 3 YGSDIVPFSK DETEVLKEDIIQGFRYGSDIVPFSKVDEEQ IQGFRYGSDIVPFSKVDEEQMKYKSEGKCF R Y G S K V 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 2 0 0 1 1 0 0 10 0 1111.555 P13010;Q53T09 P13010 316 325 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 0.0005456 101.46 4 1 0.55446 0.74056 9.7193 5 Median 0.56863 0.71431 5.1683 4 0 Median 0.55446 0.86212 NaN 1 0 Median 195350000 123840000 71512000 170010000 107810000 62202000 25341000 16031000 9309600 13624 1262 13984 49540;49541;49542;49543;49544 74711;74712;74713;74714;74715;74716;74717 74714 7 YGVFPLR KTLAVSGLGVVGRDKYGVFPLRGKILNVRE LGVVGRDKYGVFPLRGKILNVREASHKQIM K Y G L R G 0 1 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 1 1 0 0 7 0 850.47012 P11388;Q71UH4;Q02880;B4DKD0;E9PCY5 P11388 481 487 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2;DNA topoisomerase 2-beta no no 2 0.0041144 126.05 4 2 0.84 1.2149 6.7983 6 Median 0.86104 1.1868 3.4883 4 0 Median 0.80975 1.3351 3.5884 2 0 Median 1516800000 816140000 700660000 1137500000 608860000 528610000 379320000 207280000 172050000 13625 1256;1437 13985 49545;49546;49547;49548;49549;49550 74718;74719;74720;74721;74722;74723;74724;74725;74726;74727;74728;74729;74730;74731;74732 74718 15 YGVIILDEAHER GMLLREAMNDPLLERYGVIILDEAHERTLA LERYGVIILDEAHERTLATDILMGVLKEVV R Y G E R T 1 1 0 1 0 0 2 1 1 2 1 0 0 0 0 0 0 0 1 1 0 0 12 0 1413.7252 O43143;B4E0S6 O43143 254 265 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 3 0.035202 24.5 1 0.56739 0.75713 NaN 1 Median 0.56739 0.75713 NaN 1 0 Median NaN NaN NaN 0 0 Median 23212000 14200000 9012000 23212000 14200000 9012000 0 0 0 13626 1180 13986 49551 74733 74733 1 YGVIIVGNPK LNDPRRLNVALTRARYGVIIVGNPKALSKQ LTRARYGVIIVGNPKALSKQPLWNHLLNYY R Y G P K A 0 0 1 0 0 0 0 2 0 2 0 1 0 0 1 0 0 0 1 2 0 0 10 0 1058.6124 A0A024R7L5;A0A024R7L8;Q92900;B3KY55 A0A024R7L5 868 877 UPF1 Regulator of nonsense transcripts 1 yes no 2 0.021355 53.166 1 0.36861 0.45615 NaN 1 Median 0.36861 0.45615 NaN 1 0 Median NaN NaN NaN 0 0 Median 3939800 2613500 1326300 3939800 2613500 1326300 0 0 0 13627 180 13987 49552 74734 74734 1 YGVNPGPIVGTTR VTELTNEDLLDQLVKYGVNPGPIVGTTRKL VKYGVNPGPIVGTTRKLYEKKLLKLREQGT K Y G T R K 0 1 1 0 0 0 0 3 0 1 0 0 0 0 2 0 2 0 1 2 0 0 13 0 1329.7041 A0A024RBE7;P42167;G5E972;A0A024RBH7;Q59G12;H0YJH7;P42166 P42166 127 139 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin no no 2 0.00018831 73.499 3 2 0.48983 0.66607 11.298 3 Median 0.48983 0.66607 11.298 3 0 Median NaN NaN NaN 0 0 Median 229790000 176480000 53314000 141050000 87738000 53314000 88739000 88739000 0 13628 1335;270 13988 49553;49554;49555;49556;49557 74735;74736;74737;74738;74739;74740;74741 74739 7 YGYTEDPLEVR EAVSSNVIDYGHASKYGYTEDPLEVRIYDP HASKYGYTEDPLEVRIYDPEIPTDEVENEF K Y G V R I 0 1 0 1 0 0 2 1 0 0 1 0 0 0 1 0 1 0 2 1 0 0 11 0 1340.6248 Q14966;D6W5H1;A8K583;A0A096LPH6;B4DF54 Q14966 217 227 ZNF638 Zinc finger protein 638 yes no 2 0.0045222 66.435 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2702800 2702800 0 2702800 2702800 0 0 0 0 13629 1498 13989 49558 74742;74743 74743 2 YGYTHLSAGELLR PGAGKGTQCARIVEKYGYTHLSAGELLRDE EKYGYTHLSAGELLRDERKNPDSQYGELIE K Y G L R D 1 1 0 0 0 0 1 2 1 0 3 0 0 0 0 1 1 0 2 0 0 0 13 0 1478.7518 Q5T0D2;B4DDL4;B2R6S5;P30085 Q5T0D2 59 71 CMPK1;CMPK UMP-CMP kinase yes no 3 0.0089223 36.77 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4757200 4757200 0 4757200 4757200 0 0 0 0 13630 700 13990 49559 74744 74744 1 YHAASAEEQATIER MIQTLEAVKRKQFEKYHAASAEEQATIERN KYHAASAEEQATIERNPYTIFHQALKNCEP K Y H E R N 4 1 0 0 0 1 3 0 1 1 0 0 0 0 0 1 1 0 1 0 0 0 14 0 1574.7325 A0A024R8L0;J3QLS3;Q9Y2R9;J3QQS1;J3KSI8;J3QKW2 A0A024R8L0 126 139 MRPS7 28S ribosomal protein S7, mitochondrial yes no 2 0.00044192 61.353 1 0.63073 0.83651 NaN 1 Median 0.63073 0.83651 NaN 1 0 Median NaN NaN NaN 0 0 Median 1735800 1028900 706920 1735800 1028900 706920 0 0 0 13631 199 13991 49560 74745 74745 1 YHDEADQSALQR KKKGEFPGEKSKRLRYHDEADQSALQRMTR RLRYHDEADQSALQRMTRLRVTWSMQEDGL R Y H Q R M 2 1 0 2 0 2 1 0 1 0 1 0 0 0 0 1 0 0 1 0 0 0 12 0 1431.6379 Q6AHZ7;Q12789;Q6AWA4;H3BRD0 Q6AHZ7 1246 1257 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 8.137E-07 128.88 2 2 1.0529 1.3584 9.6592 3 Plateau 0.82882 1.1603 NaN 1 0 Median 1.0484 1.3706 1.2691 2 0 Median 7986500 4274900 3711600 2196200 1170600 1025600 5790300 3104300 2686000 13632 1457 13992 49561;49562;49563;49564 74746;74747;74748;74749;74750 74746 5 YHDIEPGAVVK LLSLRTSIIEAQYLRYHDIEPGAVVKGTVL QYLRYHDIEPGAVVKGTVLTIKSYGMLVKV R Y H V K G 1 0 0 1 0 0 1 1 1 1 0 1 0 0 1 0 0 0 1 2 0 0 11 0 1226.6295 Q14690;B4DH82;B4DES7 Q14690 447 457 PDCD11 Protein RRP5 homolog yes no 2 1.6078E-08 132.01 4 2 0.98469 1.2378 10.823 6 Median 1.0705 1.3295 7.4539 4 0 Median 0.72651 1.0906 5.3211 2 0 Median 128250000 64948000 63301000 104510000 50906000 53608000 23736000 14043000 9693000 13633 1494 13993 49565;49566;49567;49568;49569;49570 74751;74752;74753;74754;74755;74756;74757;74758 74755 8 YHDMPDVIDFLVLR DPDTGKLTGGSFTMKYHDMPDVIDFLVLRQ KYHDMPDVIDFLVLRQQFDDAKYRRWNIGD K Y H L R Q 0 1 0 3 0 0 0 0 1 1 2 0 1 1 1 0 0 0 1 2 0 0 14 0 1731.8654 Q9NSI6;Q5R2U7;H7C409;H7BZR9;Q8WWQ0 Q8WWQ0 1042 1055 BRWD1;WDR9;PHIP Bromodomain and WD repeat-containing protein 1;PH-interacting protein no no 3 4.9796E-06 80.469 5 2 0.82186 1.1544 6.4508 6 Median 0.82318 1.1373 5.5505 4 0 Median 0.78678 1.2373 8.2834 2 0 Median 82835000 46252000 36582000 19842000 10750000 9091500 62993000 35502000 27491000 13634 1668;1758 13994;13995 49571;49572;49573;49574;49575;49576;49577 74759;74760;74761;74762;74763;74764;74765;74766;74767;74768 74767 746 10 YHFLILLFSK FVISLDPPIKQGQTRYHFLILLFSKDEDIS QGQTRYHFLILLFSKDEDISLTLNMNEEEV R Y H S K D 0 0 0 0 0 0 0 0 1 1 3 1 0 2 0 1 0 0 1 0 0 0 10 0 1279.7329 A0A024R4Z6;Q08945 A0A024R4Z6 270 279 SSRP1 FACT complex subunit SSRP1 yes no 2 0.0049878 86.67 4 2 0.78818 1.079 11.425 2 Median 0.78388 0.99523 NaN 1 0 Median 0.7925 1.1698 NaN 1 0 Median 23185000 11212000 11973000 11197000 2734900 8461900 11988000 8477400 3511000 13635 132 13996 49578;49579;49580;49581;49582;49583 74769;74770;74771;74772;74773;74774;74775 74771 7 YHIGDEVK PMHLADILMKNPEKKYHIGDEVKCRVLLCD MKNPEKKYHIGDEVKCRVLLCDPEAKKLMM K Y H V K C 0 0 0 1 0 0 1 1 1 1 0 1 0 0 0 0 0 0 1 1 0 0 8 0 959.47125 Q14690;B4DH82;B4DES7 Q14690 497 504 PDCD11 Protein RRP5 homolog yes no 2 0.005941 86.794 1 2 0.69501 1.0011 14.76 3 Median 0.95394 1.232 NaN 1 0 Median 0.66598 0.96277 5.5236 2 0 Median 18654000 10144000 8509200 7050200 3541800 3508400 11603000 6602600 5000800 13636 1494 13997 49584;49585;49586 74776;74777;74778;74779;74780 74778 5 YHPGYFGK GNAGGLHHHRINFDKYHPGYFGKVGMKHYH HRINFDKYHPGYFGKVGMKHYHLKRNQSFC K Y H G K V 0 0 0 0 0 0 0 2 1 0 0 1 0 1 1 0 0 0 2 0 0 0 8 0 967.4552 Q9BQQ5;E9PLL6;Q6NZ52;P46776 Q9BQQ5 48 55 L27a;RPL27A 60S ribosomal protein L27a yes no 2 0.01925 89.903 3 1 0.81047 1.0626 54.948 4 Median 0.81574 1.0817 3.5342 3 0 Median 0.23197 0.36095 NaN 1 0 Median 1606500000 912040000 694490000 1417600000 761470000 656110000 188960000 150570000 38386000 13637 1040 13998 49587;49588;49589;49590 74781;74782;74783;74784;74785 74782 5 YHSDDYIK EIYRPHKANAEEMTKYHSDDYIKFLRSIRP NAEEMTKYHSDDYIKFLRSIRPDNMSEYSK K Y H I K F 0 0 0 2 0 0 0 0 1 1 0 1 0 0 0 1 0 0 2 0 0 0 8 0 1039.4611 Q6IT96;B5BU61;Q13547;Q5TEE2;B4DSK9;B7Z3S4 Q6IT96 67 74 HDAC1 Histone deacetylase;Histone deacetylase 1 yes no 2 0.005485 89.752 1 0.63862 0.78181 NaN 1 Median 0.63862 0.78181 NaN 1 0 Median NaN NaN NaN 0 0 Median 22725000 13303000 9421600 22725000 13303000 9421600 0 0 0 13638 894 13999 49591 74786 74786 1 YHSDEYIK EIYRPHKATAEEMTKYHSDEYIKFLRSIRP TAEEMTKYHSDEYIKFLRSIRPDNMSEYSK K Y H I K F 0 0 0 1 0 0 1 0 1 1 0 1 0 0 0 1 0 0 2 0 0 0 8 0 1053.4767 Q92769;B3KUJ5;E5RFI6;E5RJ04;E5RGV4;E5RHE7;E5RH52;E5RG37;E5RFP9;H3BM24;E5RK19 Q92769 68 75 HDAC2 Histone deacetylase 2;Histone deacetylase yes no 2 7.4044E-05 132.08 2 1 0.77003 0.95802 30.948 3 Median 0.75642 0.95522 0.41379 2 0 Median 1.0802 1.6326 NaN 1 0 Median 52185000 28383000 23802000 36926000 21213000 15713000 15259000 7169900 8089200 13639 1675 14000 49592;49593;49594 74787;74788;74789;74790;74791;74792 74789 6 YHTINGHNAEVR TFDDHDPVDKIVLQKYHTINGHNAEVRKAL LQKYHTINGHNAEVRKALSRQEMQEVQSSR K Y H V R K 1 1 2 0 0 0 1 1 2 1 0 0 0 0 0 0 1 0 1 1 0 0 12 0 1409.68 P22626;A0A024RA28;A0A087WUI2;I6L957 P22626 174 185 HNRNPA2B1;HNRPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2;3 1.8957E-05 117.7 5 0.22585 0.3044 4.2304 2 Median 0.22585 0.3044 4.2304 2 0 Median NaN NaN NaN 0 0 Median 36581000 32880000 3701100 36581000 32880000 3701100 0 0 0 13640 1290 14001 49595;49596;49597;49598;49599 74793;74794;74795;74796;74797 74796 5 YHTMQAAVDAVAR LLSQFREYLDYDDTRYHTMQAAVDAVARVT TRYHTMQAAVDAVARVTGQHPEVPPAFWNN R Y H A R V 4 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 1 0 1 2 0 0 13 0 1431.6929 Q9BVI4;F5H303 Q9BVI4 182 194 NOC4L Nucleolar complex protein 4 homolog yes no 2 0.00038491 63.32 2 0.57174 0.75638 1.4869 2 Median NaN NaN NaN 0 0 Median 0.57174 0.75638 1.4869 2 0 Median 10543000 7043500 3499900 0 0 0 10543000 7043500 3499900 13641 1718 14002 49600;49601 74798;74799 74799 779 1 YHTSQSGDEMTSLSEYVSR HEDSTNRRRLSELLRYHTSQSGDEMTSLSE QSGDEMTSLSEYVSRMKETQKSIYYITGES R Y H S R M 0 1 0 1 0 1 2 1 1 0 1 0 1 0 0 5 2 0 2 1 0 0 19 0 2175.9379 A0A024RD80;P08238;B4DMA2;B4DGL0;Q9H6X9;A8K3W9 A0A024RD80 457 475 HSP90AB1 Heat shock protein HSP 90-beta no no 3 2.9809E-07 101.49 5 1 0.40692 0.56141 104.92 6 Median 0.39287 0.5402 13.884 5 0 Median 4.5465 7.1867 NaN 1 0 Median 65660000 31667000 33993000 38088000 27037000 11051000 27573000 4630200 22942000 13642 312;598 14003;14004 49602;49603;49604;49605;49606;49607 74800;74801;74802;74803;74804;74805;74806;74807;74808 74801 118 9 YHTVNGHNCEVR TFDDHDSVDKIVIQKYHTVNGHNCEVRKAL IQKYHTVNGHNCEVRKALSKQEMASASSSQ K Y H V R K 0 1 2 0 1 0 1 1 2 0 0 0 0 0 0 0 1 0 1 2 0 0 12 0 1484.6579 F8W6I7;A0A024RB53;A0A024RAZ7;P09651;Q0VAC0;Q6IPF2;A0A024RC46;F8VTQ5;F8VZ49;Q9BSM5;H0YH80;Q3MI39 F8W6I7 167 178 HNRNPA1;HNRPA1;hCG_2020860 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 3 0.028992 67.519 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1886100 1886100 0 1886100 1886100 0 0 0 0 13643 253 14005 49608 74809 74809 1 YHVLVNLGK RKEIDLLLGQTDDTRYHVLVNLGKKITDYG QTDDTRYHVLVNLGKKITDYGGDKEIQNMD R Y H G K K 0 0 1 0 0 0 0 1 1 0 2 1 0 0 0 0 0 0 1 2 0 0 9 0 1041.5971 O75643 O75643 169 177 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 3.7197E-05 133.81 2 2 0.8959 1.2145 49.739 4 Median 0.59505 0.75322 18.629 2 0 Median 1.1673 1.7461 2.4066 2 0 Median 44100000 25125000 18975000 25101000 16338000 8763000 18999000 8787100 10212000 13644 1206 14006 49609;49610;49611;49612 74810;74811;74812;74813;74814;74815;74816 74810 7 YHVVSGADDYTVK GHTKAVHTVDFTADKYHVVSGADDYTVKLW DKYHVVSGADDYTVKLWDIPNSKEILTFKE K Y H V K L 1 0 0 2 0 0 0 1 1 0 0 1 0 0 0 1 1 0 2 3 0 0 13 0 1452.6885 Q8TED0;H0Y8P4 Q8TED0 135 147 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 1.284E-25 199.68 4 2 0.92719 1.1121 11.163 6 Plateau 0.97193 1.1367 4.2897 4 0 Linear 0.62058 0.93755 6.6615 2 0 Median 167300000 88864000 78432000 136820000 70369000 66449000 30478000 18494000 11984000 13645 1660 14007 49613;49614;49615;49616;49617;49618 74817;74818;74819;74820;74821;74822;74823;74824;74825;74826;74827;74828;74829 74818 13 YHYELLNYIDLPVLAIHGK KKKLMVFFSSCMSVKYHYELLNYIDLPVLA LLNYIDLPVLAIHGKQKQNKRTTTFFQFCN K Y H G K Q 1 0 1 1 0 0 1 1 2 2 4 1 0 0 1 0 0 0 3 1 0 0 19 0 2270.2099 Q4ZG72;A0A024RAH8;Q9NVP1;Q8N254;Q59FR7;H7C452 Q4ZG72 316 334 DDX18 ATP-dependent RNA helicase DDX18 yes no 3;4 1.2453E-11 124.45 6 3 0.98825 1.2913 23.407 9 Median 1.0474 1.3217 17.519 6 0 Median 0.59692 0.96864 4.3156 3 0 Median 389800000 202320000 187480000 254030000 117880000 136150000 135770000 84449000 51325000 13646 242 14008 49619;49620;49621;49622;49623;49624;49625;49626;49627 74830;74831;74832;74833;74834;74835;74836;74837;74838;74839;74840;74841;74842 74834 12 YIAPTVLTDVDPK GQKIAFGGETDEATRYIAPTVLTDVDPKTK TRYIAPTVLTDVDPKTKVMQEEIFGPILPI R Y I P K T 1 0 0 2 0 0 0 0 0 1 1 1 0 0 2 0 2 0 1 2 0 0 13 0 1430.7657 J3QRD1;Q59H65;P51648;Q68D64 J3QRD1 312 324 ALDH3A2;DKFZp686E23276 Fatty aldehyde dehydrogenase yes no 2 0.0061588 42.001 1 0.49144 0.61893 NaN 1 Median 0.49144 0.61893 NaN 1 0 Median NaN NaN NaN 0 0 Median 7546600 4837800 2708800 7546600 4837800 2708800 0 0 0 13647 1145 14009 49628 74843 74843 1 YIASVQGSTPSPR ______________________________ ERYIASVQGSTPSPRQKSMKGFYFAKLYYE R Y I P R Q 1 1 0 0 0 1 0 1 0 1 0 0 0 0 2 3 1 0 1 1 0 0 13 0 1361.6939 D3DX73;P49792;F8WBP7 D3DX73 11 23 hCG_1994636;RANBP2 E3 SUMO-protein ligase RanBP2 yes no 2 0.031614 77.379 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2325500 2325500 0 2325500 2325500 0 0 0 0 13648 987 14010 49629 74844 74844 1 YICDNQDTISSK GDLLECADDRADLAKYICDNQDTISSKLKE LAKYICDNQDTISSKLKECCDKPLLEKSHC K Y I S K L 0 0 1 2 1 1 0 0 0 2 0 1 0 0 0 2 1 0 1 0 0 0 12 0 1442.6348 CON__P02769 CON__P02769 286 297 yes yes 2 0.00015776 134.84 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13846000 13846000 0 13846000 13846000 0 0 0 0 + 13649 952 14011 49630;49631;49632 74845;74846;74847 74845 3 YIDQEELNK SGKDKKKKTKKIKEKYIDQEELNKTKPIWT KKIKEKYIDQEELNKTKPIWTRNPDDITQE K Y I N K T 0 0 1 1 0 1 2 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0 9 0 1150.5506 A0A024RD80;P08238;B4DMA2;B4DGL0;Q6PK50;Q58FF8;K9JA46;P07900;Q2VPJ6;Q8TBA7;Q86U12;O75322;Q14568 A0A024RD80 276 284 HSP90AB1;HSP90AB2P;EL52;HSP90AA1;HSP90AA2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 no no 2 3.9494E-05 157.33 4 1 0.45302 0.58765 10.531 4 Median 0.45302 0.58765 10.531 4 0 Median NaN NaN NaN 0 0 Median 326520000 182740000 143780000 276410000 182740000 93668000 50115000 0 50115000 13650 312;1155;1551 14012 49633;49634;49635;49636;49637 74848;74849;74850;74851;74852;74853;74854;74855;74856 74849 9 YIDSADLEPITSQEEPVR LEHSALAINHKLEIKYIDSADLEPITSQEE SADLEPITSQEEPVRYHEAWQKLCSAHGVL K Y I V R Y 1 1 0 2 0 1 3 0 0 2 1 0 0 0 2 2 1 0 1 1 0 0 18 0 2060.9902 P17812;B4E1E0;B4DMB5 P17812 336 353 CTPS1 CTP synthase 1;CTP synthase yes no 2 2.4569E-11 164.13 3 0.31852 0.43292 NaN 1 Median 0.31852 0.43292 NaN 1 0 Median NaN NaN NaN 0 0 Median 13482000 9117400 4365000 13482000 9117400 4365000 0 0 0 13651 1278 14013 49638;49639;49640 74857;74858;74859 74857 2 YIEFHSQSGFYYK LSDDYSKIVFLHNDRYIEFHSQSGFYYKTR DRYIEFHSQSGFYYKTRIPKFGRDFSYHYP R Y I Y K T 0 0 0 0 0 1 1 1 1 1 0 1 0 2 0 2 0 0 3 0 0 0 13 0 1667.762 Q9BSC4;B4DS83;H7C1Z3 Q9BSC4 118 130 NOL10 Nucleolar protein 10 yes no 3 0.00023696 97.957 2 0.95275 1.1856 13.044 2 Median 0.95275 1.1856 13.044 2 0 Median NaN NaN NaN 0 0 Median 40456000 21171000 19285000 40456000 21171000 19285000 0 0 0 13652 1710 14014 49641;49642 74860;74861;74862 74860 3 YIEGLSAESNSISK PPKTQRLLHSEAYLKYIEGLSAESNSISKW KYIEGLSAESNSISKWDQTLAARRRDVHLS K Y I S K W 1 0 1 0 0 0 2 1 0 2 1 1 0 0 0 4 0 0 1 0 0 0 14 0 1496.7359 Q86U86;Q5EBM5;Q9NVM2 Q86U86 1613 1626 PBRM1;PB1 Protein polybromo-1 yes no 2 0.019355 77.387 1 1 0.80081 1.0935 NaN 1 Median NaN NaN NaN 0 0 Median 0.80081 1.0935 NaN 1 0 Median 4892800 2073300 2819500 1074900 0 1074900 3817900 2073300 1744600 13653 1620 14015 49643;49644 74863;74864 74864 2 YIELLTR PSGVILQEAADVHARYIELLTRSGDYYRFL EAADVHARYIELLTRSGDYYRFLSEMLKSL R Y I T R S 0 1 0 0 0 0 1 0 0 1 2 0 0 0 0 0 1 0 1 0 0 0 7 0 906.51747 P15924;Q4LE79;B4E2A0;B4DKX6 P15924 1003 1009 DSP;DSP variant protein Desmoplakin yes no 2 0.049279 52.683 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4085500 4085500 0 4085500 4085500 0 0 0 0 13654 1270 14016 49645 74865 74865 1 YIFCVSGDFVK SELNFRRAVFSADSKYIFCVSGDFVKVYST ADSKYIFCVSGDFVKVYSTVTEECVHILHG K Y I V K V 0 0 0 1 1 0 0 1 0 1 0 1 0 2 0 1 0 0 1 2 0 0 11 0 1333.6377 A8K330;Q8IWA0;F8WE20;F8WC81 A8K330 30 40 WDR75 WD repeat-containing protein 75 yes no 2 0.00069356 89.08 4 1 0.84965 1.0712 37.253 5 Median 0.8946 1.1176 6.9648 4 0 Median 0.32784 0.48596 NaN 1 0 Median 97722000 52434000 45289000 90346000 47491000 42856000 7376000 4942900 2433100 13655 588 14017 49646;49647;49648;49649;49650 74866;74867;74868;74869;74870;74871;74872;74873;74874 74872 9 YIFSVVENLQR FLPRPIRQQLLYKRRYIFSVVENLQRLCYM YKRRYIFSVVENLQRLCYMGLLQFGPTEKF R Y I Q R L 0 1 1 0 0 1 1 0 0 1 1 0 0 1 0 1 0 0 1 2 0 0 11 0 1366.7245 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 961 971 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.034491 77.677 1 0.67744 0.94283 NaN 1 Median 0.67744 0.94283 NaN 1 0 Median NaN NaN NaN 0 0 Median 4505300 2566200 1939000 4505300 2566200 1939000 0 0 0 13656 1457 14018 49651 74875 74875 1 YIFTLGDIAQLCPAR KENGTGNMDEDLLVKYIFTLGDIAQLCPAR YIFTLGDIAQLCPARVEKRIFLLIQSVLAS K Y I A R V 2 1 0 1 1 1 0 1 0 2 2 0 0 1 1 0 1 0 1 0 0 0 15 0 1736.892 P42695;G3V1A9 P42695 856 870 NCAPD3 Condensin-2 complex subunit D3 yes no 2 2.9207E-18 145.55 4 0.74004 0.98631 2.0069 3 Median 0.74004 0.98631 2.0069 3 0 Median NaN NaN NaN 0 0 Median 49270000 24112000 25157000 49270000 24112000 25157000 0 0 0 13657 1338 14019 49652;49653;49654;49655 74876;74877;74878;74879;74880;74881 74879 6 YIFTMLSSLAR FGTRLHGGKDSASPRYIFTMLSSLARLLFP ASPRYIFTMLSSLARLLFPPKDDHTLKFLY R Y I A R L 1 1 0 0 0 0 0 0 0 1 2 0 1 1 0 2 1 0 1 0 0 0 11 0 1300.6849 P11388 P11388 805 815 TOP2A DNA topoisomerase 2-alpha yes yes 2 6.8743E-09 153.05 10 7 0.85582 1.1954 17.294 15 Median 0.87177 1.1788 18.628 8 0 Median 0.78028 1.2985 16.564 7 0 Median 1193000000 696810000 496210000 179300000 102660000 76639000 1013700000 594150000 419570000 13658 1256 14020;14021 49656;49657;49658;49659;49660;49661;49662;49663;49664;49665;49666;49667;49668;49669;49670;49671;49672 74882;74883;74884;74885;74886;74887;74888;74889;74890;74891;74892;74893;74894;74895;74896;74897;74898;74899;74900;74901;74902;74903;74904;74905;74906;74907;74908;74909;74910;74911;74912;74913 74902 521 32 YIFTMLSTLAR FGTRLHGGKDAASPRYIFTMLSTLARLLFP ASPRYIFTMLSTLARLLFPAVDDNLLKFLY R Y I A R L 1 1 0 0 0 0 0 0 0 1 2 0 1 1 0 1 2 0 1 0 0 0 11 0 1314.7006 Q71UH4;Q02880;B4DKD0;E9PCY5;Q59H80 Q71UH4 798 808 TOP2B DNA topoisomerase 2;DNA topoisomerase 2-beta yes no 2 0.0015416 62.823 3 0.40939 0.64987 7.849 3 Median NaN NaN NaN 0 0 Median 0.40939 0.64987 7.849 3 0 Median 69738000 47278000 22460000 0 0 0 69738000 47278000 22460000 13659 1437 14022 49673;49674;49675 74914;74915;74916;74917 74915 644 4 YIGENLQLLVDRPDGTYCFR LTEEETRVMFEKIAKYIGENLQLLVDRPDG LQLLVDRPDGTYCFRLHNDRVYYVSEKIMK K Y I F R L 0 2 1 2 1 1 1 2 0 1 3 0 0 1 1 0 1 0 2 1 0 0 20 1 2428.1845 Q9Y221;B3KM49;J3QLW7 Q9Y221 19 38 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog yes no 3 6.5041E-32 130.85 4 2 0.69925 0.96051 18.898 6 Median 0.70253 0.96794 0.9498 4 0 Median 0.43569 0.68041 11.787 2 0 Median 547360000 327910000 219460000 459780000 271880000 187900000 87586000 56027000 31559000 13660 1800 14023 49676;49677;49678;49679;49680;49681 74918;74919;74920;74921;74922;74923;74924;74925;74926;74927;74928;74929;74930;74931;74932 74927 15 YIGEVGDIVVGR ERVNKLICVKALKTRYIGEVGDIVVGRITE KTRYIGEVGDIVVGRITEVQQKRWKVETNS R Y I G R I 0 1 0 1 0 0 1 3 0 2 0 0 0 0 0 0 0 0 1 3 0 0 12 0 1275.6823 Q13868;A3KFL5;A3KFL2;B4E001;A3KFL1 Q13868 76 87 EXOSC2 Exosome complex component RRP4 yes no 2 0.0018852 64.73 1 2 0.5705 0.78872 NaN 1 Median NaN NaN NaN 0 0 Median 0.5705 0.78872 NaN 1 0 Median 22295000 18899000 3396100 5525700 5525700 0 16769000 13373000 3396100 13661 1478 14024 49682;49683;49684 74933;74934;74935 74935 3 YIGFETVNGDIFICTQK TMFGQTNCWVRPDMKYIGFETVNGDIFICT GFETVNGDIFICTQKAARNMSYQGFTKDNG K Y I Q K A 0 0 1 1 1 1 1 2 0 3 0 1 0 2 0 0 2 0 1 1 0 0 17 0 2003.9663 B4E266;B4DER1;B2RCM2;Q9P2J5;Q9H8E3 B4E266 267 283 LARS Leucine--tRNA ligase, cytoplasmic yes no 2 0.0077071 43.544 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1675900 1675900 0 1675900 1675900 0 0 0 0 13662 732 14025 49685 74936 74936 1 YIHFPVTVVSAPGLAPSATPGAPR GPGDSSEEESSPTSRYIHFPVTVVSAPGLA SAPGLAPSATPGAPRIEQLDGVDDGTDSEA R Y I P R I 4 1 0 0 0 0 0 2 1 1 1 0 0 1 5 2 2 0 1 3 0 0 24 0 2404.2903 Q9UMN6 Q9UMN6 2034 2057 KMT2B Histone-lysine N-methyltransferase 2B yes yes 3 0.012236 19.755 1 0.50809 0.72216 NaN 1 Median 0.50809 0.72216 NaN 1 0 Median NaN NaN NaN 0 0 Median 5656300 3365200 2291100 5656300 3365200 2291100 0 0 0 13663 1794 14026 49686 74937 74937 1 YILAATLDNTLK DNPPVSFVKFSPNGKYILAATLDNTLKLWD NGKYILAATLDNTLKLWDYSKGKCLKTYTG K Y I L K L 2 0 1 1 0 0 0 0 0 1 3 1 0 0 0 0 2 0 1 0 0 0 12 0 1334.7446 P61964 P61964 228 239 WDR5 WD repeat-containing protein 5 yes yes 2 4.2447E-05 134.23 4 2 0.88939 1.0894 9.8681 5 Median 0.86387 1.0884 6.4918 4 0 Median 0.89315 1.331 NaN 1 0 Median 65079000 35574000 29505000 47863000 24341000 23522000 17217000 11233000 5983700 13664 1394 14027 49687;49688;49689;49690;49691;49692 74938;74939;74940;74941;74942;74943;74944;74945;74946 74940 9 YILAGGNSSGK YLVSVCSINAMHPTRYILAGGNSSGKIHVF HPTRYILAGGNSSGKIHVFMNEKSC_____ R Y I G K I 1 0 1 0 0 0 0 3 0 1 1 1 0 0 0 2 0 0 1 0 0 0 11 0 1065.5455 A0A0C4DFX7;Q9H967 A0A0C4DFX7 542 552 WDR76 WD repeat-containing protein 76 yes no 2 0.046336 62.463 1 1.181 1.4852 NaN 1 Median 1.181 1.4852 NaN 1 0 Median NaN NaN NaN 0 0 Median 3651500 869030 2782500 3651500 869030 2782500 0 0 0 13665 421 14028 49693 74947 74947 1 YILATLLK IGGGSIRIHNAELQRYILATLLKEDVKMLS HNAELQRYILATLLKEDVKMLSHLLQALDY R Y I L K E 1 0 0 0 0 0 0 0 0 1 3 1 0 0 0 0 1 0 1 0 0 0 8 0 933.5899 A8K4A8;A0A024R8Z9;Q6PI48;Q9NVT8;Q9H9J7 A8K4A8 551 558 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 2 0.011641 68.787 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3330400 3330400 0 3330400 3330400 0 0 0 0 13666 209 14029 49694 74948 74948 1 YILDYPLGDK QSEPARVQCRQVFLKYILDYPLGDKLRPNL QVFLKYILDYPLGDKLRPNLEFMLAQLNYE K Y I D K L 0 0 0 2 0 0 0 1 0 1 2 1 0 0 1 0 0 0 2 0 0 0 10 0 1195.6125 O75691;B4DN27 O75691 2271 2280 UTP20 Small subunit processome component 20 homolog yes no 2 0.019275 46.001 1 1.092 1.4583 NaN 1 Median NaN NaN NaN 0 0 Median 1.092 1.4583 NaN 1 0 Median 3397000 1942600 1454400 0 0 0 3397000 1942600 1454400 13667 1207 14030 49695 74949 74949 1 YILNVTPNLPNFFEK RDSANLESLAKLGIRYILNVTPNLPNFFEK YILNVTPNLPNFFEKNGDFHYKQIPISDHW R Y I E K N 0 0 3 0 0 0 1 0 0 1 2 1 0 2 2 0 1 0 1 1 0 0 15 0 1807.9509 Q8N4A4;Q6P9C2;B2RAL9;Q99956 Q8N4A4 202 216 DUSP9 Dual specificity protein phosphatase;Dual specificity protein phosphatase 9 yes no 2 1.9457E-05 125.36 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3472800 3472800 0 3472800 3472800 0 0 0 0 13668 724 14031 49696;49697 74950;74951 74950 2 YILVTGGVISGIGK ______________________________ KYILVTGGVISGIGKGIIASSVGTILKSCG K Y I G K G 0 0 0 0 0 0 0 4 0 3 1 1 0 0 0 1 1 0 1 2 0 0 14 0 1375.8075 P17812;B4DMB5;B7Z9C4 P17812 3 16 CTPS1 CTP synthase 1;CTP synthase no no 2 6.873E-05 91.937 3 0.31374 0.40388 7.321 3 Median 0.31374 0.40388 7.321 3 0 Median NaN NaN NaN 0 0 Median 23431000 17997000 5434000 23431000 17997000 5434000 0 0 0 13669 1278 14032 49698;49699;49700 74952;74953;74954 74954 3 YIMLNPSSR TWLVSWTENIQGSIKYIMLNPSSRIKGEKD IQGSIKYIMLNPSSRIKGEKDWQKYETARR K Y I S R I 0 1 1 0 0 0 0 0 0 1 1 0 1 0 1 2 0 0 1 0 0 0 9 0 1079.5434 P11387;B9EG90 P11387 426 434 TOP1 DNA topoisomerase 1 yes no 2 0.0014349 98.299 6 0.73765 0.98337 9.0323 5 Median 0.73765 0.98337 9.0323 5 0 Median NaN NaN NaN 0 0 Median 86233000 46882000 39351000 86233000 46882000 39351000 0 0 0 13670 1255 14033;14034 49701;49702;49703;49704;49705;49706 74955;74956;74957;74958;74959;74960;74961;74962;74963;74964 74961 504 10 YIPNRGPLDK MVAEKRLIPDGCGVKYIPNRGPLDKWRALH GCGVKYIPNRGPLDKWRALHS_________ K Y I D K W 0 1 1 1 0 0 0 1 0 1 1 1 0 0 2 0 0 0 1 0 0 0 10 1 1171.635 P27635 P27635 199 208 RPL10 60S ribosomal protein L10 yes yes 2;3 4.7873E-05 108.57 5 0.78597 1.0386 4.3538 5 Median 0.78597 1.0386 4.3538 5 0 Median NaN NaN NaN 0 0 Median 561240000 309750000 251490000 561240000 309750000 251490000 0 0 0 13671 1301 14035 49707;49708;49709;49710;49711 74965;74966;74967;74968;74969;74970 74969 6 YIQDFQR LSKKYKELPEKKKMKYIQDFQREKQEFERN LPEKKKMKYIQDFQREKQEFERNLARFRED K Y I Q R E 0 1 0 1 0 2 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 7 0 968.47158 E9PKP7;P17480;A8K962;B4DNQ1;O00164;Q05BZ1;E9PMM2 E9PKP7 161 167 UBTF Nucleolar transcription factor 1 yes no 2 0.010532 107.74 2 2 0.77946 1.1548 9.4441 4 Median 0.77946 1.0767 1.0212 2 0 Median 0.7829 1.2623 3.6999 2 0 Median 220590000 121690000 98907000 117920000 64626000 53296000 102670000 57062000 45611000 13672 1039 14036 49712;49713;49714;49715 74971;74972;74973;74974;74975 74973 5 YIQELWR ______________________________ ______________________________ K Y I W R K 0 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 7 0 1006.5236 A0A024R2Q4;P61313;E7EQV9;B4DLP4;E7ENU7;E7EX53;B4DEN1;E7ERA2 A0A024R2Q4 6 12 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 2 0.011292 105.39 2 0.56279 0.87557 1.3134 2 Median NaN NaN NaN 0 0 Median 0.56279 0.87557 1.3134 2 0 Median 47834000 29322000 18512000 0 0 0 47834000 29322000 18512000 13673 92 14037 49716;49717 74976;74977;74978;74979 74977 4 YIQNPTSNSDRPVTRPLAK GSGDDSDDLYLPTCKYIQNPTSNSDRPVTR PTSNSDRPVTRPLAKRALKYTDEKETEGSK K Y I A K R 1 2 2 1 0 1 0 0 0 1 1 1 0 0 3 2 2 0 1 1 0 0 19 2 2156.1338 B5BUA4;Q5FBB7 B5BUA4 388 406 SGOL1 Shugoshin-like 1 yes no 3;4 0.0047212 35.176 2 0.52401 0.64655 NaN 1 Median 0.52401 0.64655 NaN 1 0 Median NaN NaN NaN 0 0 Median 13353000 9600300 3752900 13353000 9600300 3752900 0 0 0 13674 895 14038 49718;49719 74980;74981 74981 2 YISCVFAEESDLSR VKGFMEDEGRQRTTKYISCVFAEESDLSRQ KYISCVFAEESDLSRQYQREKARSELLTTV K Y I S R Q 1 1 0 1 1 0 2 0 0 1 1 0 0 1 0 3 0 0 1 1 0 0 14 0 1674.7559 Q6AHZ7;Q12789;Q6AWA4 Q6AHZ7 428 441 DKFZp686A111;GTF3C1;DKFZp686O0870 General transcription factor 3C polypeptide 1 yes no 2 0.0010582 78.692 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13675 1457 14039 49720;49721 74982;74983 74983 2 YISSQIERPIR GENGPVLEVICSRMRYISSQIERPIRIVAL SRMRYISSQIERPIRIVALSSSLSNAKDVA R Y I I R I 0 2 0 0 0 1 1 0 0 3 0 0 0 0 1 2 0 0 1 0 0 0 11 1 1360.7463 O75643;A4FU77;B4E150;B4E0P5 O75643 1476 1486 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 8.9141E-05 64.103 2 1 0.57525 0.77743 35.584 3 Median 0.55379 0.74534 5.961 2 0 Median 0.94969 1.3745 NaN 1 0 Median 63472000 37488000 25984000 51248000 31443000 19804000 12224000 6044200 6180000 13676 1206 14040 49722;49723;49724 74984;74985;74986;74987 74986 4 YITASTFAQAR GWKAGPEGTSQEIPKYITASTFAQARAAEI EIPKYITASTFAQARAAEISAMLKAVTQKS K Y I A R A 3 1 0 0 0 1 0 0 0 1 0 0 0 1 0 1 2 0 1 0 0 0 11 0 1227.6248 Q96F88;Q99575;E5RK39 Q96F88 101 111 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 0.0027232 63.216 2 2 0.37716 0.52256 NaN 1 Median NaN NaN NaN 0 0 Median 0.37716 0.52256 NaN 1 0 Median 20062000 13707000 6355000 5696300 5696300 0 14366000 8011100 6355000 13677 1685 14041 49725;49726;49727;49728 74988;74989;74990;74991;74992 74992 5 YKEDGEALLILLPSEK EDANTYIHRAGRTARYKEDGEALLILLPSE KEDGEALLILLPSEKAMVQQLLQKKVPVKE R Y K E K A 1 0 0 1 0 0 3 1 0 1 4 2 0 0 1 1 0 0 1 0 0 0 16 1 1816.9822 Q13206;Q86VR6;E9PIF2;Q59EC7;B4DKX3 Q13206 409 424 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 3 0.0027428 37.687 3 1.4319 1.7618 22.524 3 Plateau 1.4319 1.7618 22.524 3 0 Plateau NaN NaN NaN 0 0 Median 14542000 6528400 8013600 14542000 6528400 8013600 0 0 0 13678 1466 14042 49729;49730;49731 74993;74994;74995 74994 3 YKEELIEK ERKAKSRQVGKEKGKYKEELIEKMQE____ VGKEKGKYKEELIEKMQE____________ K Y K E K M 0 0 0 0 0 0 3 0 0 1 1 2 0 0 0 0 0 0 1 0 0 0 8 1 1050.5597 Q9UNX3 Q9UNX3 135 142 RPL26L1 60S ribosomal protein L26-like 1 yes yes 2 2.5537E-16 219.25 3 2 1.3688 1.5242 38.729 4 Linear 0.99113 1.2122 6.4827 2 0 Median 0.38771 0.62175 0.78312 2 0 Median 198040000 102380000 95666000 146930000 65217000 81716000 51109000 37158000 13951000 13679 1797 14043 49732;49733;49734;49735;49736 74996;74997;74998;74999;75000;75001;75002 74997 7 YKEENIELAFDDLEPPTDDSVAAVDQASHQSLVR QRLFHERTFVQELERYKEENIELAFDDLEP SVAAVDQASHQSLVRSLARTDEARGLLWLL R Y K V R S 4 1 1 5 0 2 4 0 1 1 3 1 0 1 2 3 1 0 1 3 0 0 34 1 3800.8017 A0A0D9SFK2;A0A024QZ63;Q92614;B4DYM1;B4E0T8 A0A0D9SFK2 834 867 MYO18A;hCG_27198 Unconventional myosin-XVIIIa yes no 4 0.046211 26.728 1 0.43503 0.58373 NaN 1 Median 0.43503 0.58373 NaN 1 0 Median NaN NaN NaN 0 0 Median 4222000 3131200 1090700 4222000 3131200 1090700 0 0 0 13680 6 14044 49737 75003 75003 1 YKLDEDEDEDDADLSK ESEGEEEDEDEDLSKYKLDEDEDEDDADLS KLDEDEDEDDADLSKYNLDASEEEDSNKKK K Y K S K Y 1 0 0 6 0 0 3 0 0 0 2 2 0 0 0 1 0 0 1 0 0 0 16 1 1898.7905 O95218 O95218 167 182 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 yes yes 3 0.0033909 30.593 1 0.54479 0.68684 NaN 1 Median 0.54479 0.68684 NaN 1 0 Median NaN NaN NaN 0 0 Median 7056100 5014800 2041300 7056100 5014800 2041300 0 0 0 13681 1214 14045 49738 75004 75004 1 YKPLDLRPK QTQKENLRKFYKGKKYKPLDLRPKKTRAMR FYKGKKYKPLDLRPKKTRAMRRRLNKHEEN K Y K P K K 0 1 0 1 0 0 0 0 0 0 2 2 0 0 2 0 0 0 1 0 0 0 9 2 1128.6655 P42766 P42766 78 86 RPL35 60S ribosomal protein L35 yes yes 3 0.00018897 117.81 4 0.88813 1.1489 8.881 4 Median 0.88813 1.1489 8.881 4 0 Median NaN NaN NaN 0 0 Median 2538600000 1284500000 1254000000 2538600000 1284500000 1254000000 0 0 0 13682 1340 14046 49739;49740;49741;49742 75005;75006;75007;75008;75009;75010;75011;75012 75012 8 YLAEFATGNDRK ESKVFYYKMKGDYHRYLAEFATGNDRKEAA YHRYLAEFATGNDRKEAAENSLVAYKAASD R Y L R K E 2 1 1 1 0 0 1 1 0 0 1 1 0 1 0 0 1 0 1 0 0 0 12 1 1383.6783 V9HW98;G9K389;G9K388;P62258;B7ZA86;K7EM20;B3KT37 V9HW98 131 142 HEL2;YWHAE/FAM22B fusion;YWHAE/FAM22A fusion;YWHAE 14-3-3 protein epsilon yes no 2 0.0018549 101.97 3 0.64053 0.85781 NaN 1 Median 0.64053 0.85781 NaN 1 0 Median NaN NaN NaN 0 0 Median 6089900 5003100 1086800 6089900 5003100 1086800 0 0 0 13683 1085 14047 49743;49744;49745 75013;75014;75015;75016 75015 4 YLAEVAAGDDK ESKVFYLKMKGDYYRYLAEVAAGDDKKGIV DYYRYLAEVAAGDDKKGIVDQSQQAYQEAF R Y L D K K 3 0 0 2 0 0 1 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 11 0 1150.5506 D0PNI1;P63104;E7EX29;B0AZS6;B7Z2E6;H0YB80 D0PNI1 128 138 YWHAZ 14-3-3 protein zeta/delta yes no 2 0.012016 80.219 1 0.39591 0.49746 NaN 1 Median 0.39591 0.49746 NaN 1 0 Median NaN NaN NaN 0 0 Median 25755000 16504000 9250800 25755000 16504000 9250800 0 0 0 13684 974 14048 49746 75017 75017 1 YLAEVAAGDDKK ESKVFYLKMKGDYYRYLAEVAAGDDKKGIV YYRYLAEVAAGDDKKGIVDQSQQAYQEAFE R Y L K K G 3 0 0 2 0 0 1 1 0 0 1 2 0 0 0 0 0 0 1 1 0 0 12 1 1278.6456 D0PNI1;P63104;E7EX29;B0AZS6;B7Z2E6;H0YB80 D0PNI1 128 139 YWHAZ 14-3-3 protein zeta/delta yes no 2 0.033143 52.79 2 1 0.83321 1.1017 25.223 2 Median 0.75626 0.92176 NaN 1 0 Median 0.91798 1.3168 NaN 1 0 Median 6931200 3766900 3164300 3857300 2146600 1710700 3073900 1620300 1453600 13685 974 14049 49747;49748;49749 75018;75019;75020;75021 75019 3 YLAFLR EGINISGNFYRNKLKYLAFLRKRMNTNPSR GNFYRNKLKYLAFLRKRMNTNPSRGPYHFR K Y L L R K 1 1 0 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 1 0 0 0 6 0 781.44866 Q53H34;P40429;Q5QTS3;M0QYS1;B4DNC8;Q9BSQ6 Q53H34 54 59 RPL13A 60S ribosomal protein L13a no no 2 0.035081 89.775 2 0.72409 0.99856 3.9168 2 Median 0.72409 0.99856 3.9168 2 0 Median NaN NaN NaN 0 0 Median 611970000 357880000 254080000 611970000 357880000 254080000 0 0 0 13686 1332;1712 14050 49750;49751 75022;75023;75024 75022 3 YLAFLRK EGINISGNFYRNKLKYLAFLRKRMNTNPSR NFYRNKLKYLAFLRKRMNTNPSRGPYHFRA K Y L R K R 1 1 0 0 0 0 0 0 0 0 2 1 0 1 0 0 0 0 1 0 0 0 7 1 909.54362 Q53H34;P40429;Q5QTS3;M0QYS1;B4DNC8;Q9BSQ6 Q53H34 54 60 RPL13A 60S ribosomal protein L13a no no 2 0.049466 87.839 1 0.75223 0.99573 NaN 1 Median 0.75223 0.99573 NaN 1 0 Median NaN NaN NaN 0 0 Median 23759000 13205000 10554000 23759000 13205000 10554000 0 0 0 13687 1332;1712 14051 49752 75025 75025 1 YLAIAPPIIK IIIGQESITYHNGDKYLAIAPPIIKQSTIV HNGDKYLAIAPPIIKQSTIVCHNRVDPNGS K Y L I K Q 2 0 0 0 0 0 0 0 0 3 1 1 0 0 2 0 0 0 1 0 0 0 10 0 1097.6849 Q16531;B4DSA8;F5GY55;B7Z2A1 Q16531 245 254 DDB1 DNA damage-binding protein 1 yes no 2 0.0015494 111.65 4 2 0.83095 1.1104 11.047 6 Median 0.86371 1.0832 7.4237 4 0 Median 0.79294 1.266 0.76319 2 0 Median 294950000 159820000 135130000 174420000 91470000 82951000 120530000 68348000 52178000 13688 1520 14052 49753;49754;49755;49756;49757;49758 75026;75027;75028;75029;75030;75031;75032;75033;75034;75035;75036;75037 75026 12 YLASGSGDTTVR HSEAVISVAFSPTGKYLASGSGDTTVRFWD TGKYLASGSGDTTVRFWDLSTETPHFTCKG K Y L V R F 1 1 0 1 0 0 0 2 0 0 1 0 0 0 0 2 2 0 1 1 0 0 12 0 1225.5939 B4E074;Q9NVX2;B4E303 B4E074 128 139 NLE1 Notchless protein homolog 1 yes no 2 0.0017266 60.102 2 0.65619 0.94854 2.382 2 Median NaN NaN NaN 0 0 Median 0.65619 0.94854 2.382 2 0 Median 13287000 7807200 5480000 0 0 0 13287000 7807200 5480000 13689 883 14053 49759;49760 75038;75039 75039 2 YLAVTPDYVPPLGNFDVETLDITPHTVTAISAK TRLKHIVELQIILEKYLAVTPDYVPPLGNF TLDITPHTVTAISAKIRKKGKIERKQKTDG K Y L A K I 3 0 1 3 0 0 1 1 1 2 3 1 0 1 4 1 5 0 2 4 0 0 33 0 3556.8341 A0A024R2G2;Q9BXW9;H7BZJ7 A0A024R2G2 829 861 FANCD2 Fanconi anemia group D2 protein yes no 3 0.004095 51.066 3 0.4623 0.59018 NaN 1 Median 0.4623 0.59018 NaN 1 0 Median NaN NaN NaN 0 0 Median 5383000 4437200 945770 5383000 4437200 945770 0 0 0 13690 84 14054 49761;49762;49763 75040;75041;75042 75040 3 YLCAGAVDFYNNLENFNVDK PVATIFTTHATLLGRYLCAGAVDFYNNLEN AVDFYNNLENFNVDKEAGERQIYHRYCMER R Y L D K E 2 0 4 2 1 0 1 1 0 0 2 1 0 2 0 0 0 0 2 2 0 0 20 0 2365.0685 P13807;Q53ER0;B7Z806;B7Z6I6;B7Z8P0 P13807 212 231 GYS1 Glycogen [starch] synthase, muscle yes no 2 7.0772E-16 170.26 4 0.81551 1.0347 6.8881 3 Median 0.81551 1.0347 6.8881 3 0 Median NaN NaN NaN 0 0 Median 32931000 19935000 12996000 32931000 19935000 12996000 0 0 0 13691 1265 14055 49764;49765;49766;49767 75043;75044;75045;75046;75047;75048;75049 75043 7 YLCECQFDDNLK GYLEMSVECKLALLKYLCECQFDDNLKFKN LLKYLCECQFDDNLKFKNIINEEDADTMRL K Y L L K F 0 0 1 2 2 1 1 0 0 0 2 1 0 1 0 0 0 0 1 0 0 0 12 0 1603.6647 Q96T23;H0YER1;Q05DG0;H7C306 Q96T23 125 136 RSF1 Remodeling and spacing factor 1 yes no 2 1.1003E-09 148.32 4 0.58122 0.73533 9.1214 4 Median 0.58122 0.73533 9.1214 4 0 Median NaN NaN NaN 0 0 Median 16819000 10757000 6062000 16819000 10757000 6062000 0 0 0 13692 1702 14056 49768;49769;49770;49771 75050;75051;75052;75053;75054;75055;75056;75057;75058 75057 9 YLCLLASDAEVPEPCLPR RVSGQVQALQNHYRKYLCLLASDAEVPEPC LLASDAEVPEPCLPRQYWEALGAPEALREQ K Y L P R Q 2 1 0 1 2 0 2 0 0 0 4 0 0 0 3 1 0 0 1 1 0 0 18 0 2102.0176 B4DZE5;O00411;Q59E91;Q4G0F4 B4DZE5 533 550 POLRMT DNA-directed RNA polymerase, mitochondrial;DNA-directed RNA polymerase yes no 2 0.00044517 68.171 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2943400 2943400 0 2943400 2943400 0 0 0 0 13693 876 14057 49772;49773 75059;75060 75060 2 YLDEDTIYHLQPSGR DALKEKVIKAVVPAKYLDEDTIYHLQPSGR YLDEDTIYHLQPSGRFVIGGPQGDAGLTGR K Y L G R F 0 1 0 2 0 1 1 1 1 1 2 0 0 0 1 1 1 0 2 0 0 0 15 0 1805.8584 B4DEX8;A0A140VJP5;P31153 B4DEX8 235 249 MAT2A S-adenosylmethionine synthase;S-adenosylmethionine synthase isoform type-2 yes no 3 4.4709E-06 78.505 2 1 0.47915 0.63847 142.61 3 Median 0.354 0.4717 42.814 2 0 Median 3.6957 5.2716 NaN 1 0 Median 42599000 26594000 16005000 32690000 24740000 7949900 9909000 1853900 8055100 13694 501 14058 49774;49775;49776 75061;75062;75063;75064 75063 4 YLDFSSIITEVR QASDTSVVLSMDNNRYLDFSSIITEVRARY NNRYLDFSSIITEVRARYEEIARSSKAEAE R Y L V R A 0 1 0 1 0 0 1 0 0 2 1 0 0 1 0 2 1 0 1 1 0 0 12 0 1441.7453 B4DQ49;CON__Q8N1N4-2;CON__Q7RTT2;Q8N1N4 B4DQ49 46 57 KRT78 Keratin, type II cytoskeletal 78 yes no 2 0.0025625 100.88 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4376400 4376400 0 4376400 4376400 0 0 0 0 + 13695 849 14059 49777;49778 75065;75066 75066 2 YLDGLTAER NLEPIFQGYIDSLKRYLDGLTAERTSQNSE IDSLKRYLDGLTAERTSQNSELNNMQDLVE R Y L E R T 1 1 0 1 0 0 1 1 0 0 2 0 0 0 0 0 1 0 1 0 0 0 9 0 1036.5189 CON__P35908;P35908 CON__P35908 245 253 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2 0.0011772 124.08 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49521000 49521000 0 49521000 49521000 0 0 0 0 + 13696 964 14060 49779;49780 75067;75068 75067 2 YLDLILNDFVR LHFGLKDKETRYRQRYLDLILNDFVRQKFI YRQRYLDLILNDFVRQKFIIRSKIITYIRS R Y L V R Q 0 1 1 2 0 0 0 0 0 1 3 0 0 1 0 0 0 0 1 1 0 0 11 0 1379.7449 Q15046;Q6ZTI3;J3KRL2;H3BPV7 Q15046 231 241 KARS Lysine--tRNA ligase yes no 2 2.5584E-05 75.378 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13697 1502 14061 49781 75069 75069 1 YLECSALQQDGVK PQQGQALAKQIHAVRYLECSALQQDGVKEV VRYLECSALQQDGVKEVFAEAVRAVLNPTP R Y L V K E 1 0 0 1 1 2 1 1 0 0 2 1 0 0 0 1 0 0 1 1 0 0 13 0 1509.7133 Q6ICQ8;P84095 Q6ICQ8 154 166 ARHG;RHOG Rho-related GTP-binding protein RhoG yes no 2 0.014503 38.875 1 0.69771 0.85631 NaN 1 Median 0.69771 0.85631 NaN 1 0 Median NaN NaN NaN 0 0 Median 3804200 1918600 1885600 3804200 1918600 1885600 0 0 0 13698 1432 14062 49782 75070 75070 1 YLEGTSCIAGVLVPAK RSTTQELMEDDRVKRYLEGTSCIAGVLVPA LEGTSCIAGVLVPAKDQPGRQEKMSIYQAM R Y L A K D 2 0 0 0 1 0 1 2 0 1 2 1 0 0 1 1 1 0 1 2 0 0 16 0 1676.8807 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 2219 2234 EPPK1 Epiplakin no no 2 4.3241E-10 132.17 3 0.82455 1.0443 18.075 3 Plateau 0.82455 1.0443 18.075 3 0 Plateau NaN NaN NaN 0 0 Median 23142000 13472000 9670000 23142000 13472000 9670000 0 0 0 13699 373;1386 14063 49783;49784;49785 75071;75072;75073;75074;75075;75076 75071 6 YLENQTFR VVMVHEPKQKVDLTRYLENQTFRFDYAFDD QKVDLTRYLENQTFRFDYAFDDSAPNEMVY R Y L F R F 0 1 1 0 0 1 1 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 8 0 1069.5193 B0AZS5;D6R9M0;O00139;B4DM85 B0AZS5 222 229 KIF2A Kinesin-like protein;Kinesin-like protein KIF2A no no 2 0.0037835 100.45 3 0.88511 1.2102 NaN 1 Median 0.88511 1.2102 NaN 1 0 Median NaN NaN NaN 0 0 Median 12658000 5609300 7049200 12658000 5609300 7049200 0 0 0 13700 664;1163 14064 49786;49787;49788 75077;75078;75079;75080;75081 75081 5 YLESEEYQER LSSVPISPYKDEPWKYLESEEYQERYGSRP DEPWKYLESEEYQERYGSRPVWADYRRNHK K Y L E R Y 0 1 0 0 0 1 4 0 0 0 1 0 0 0 0 1 0 0 2 0 0 0 10 0 1344.5834 B4DFG6;B0S7P4;Q9Y676;A0A0G2JIC6 B4DFG6 58 67 MRPS18B 28S ribosomal protein S18b, mitochondrial yes no 2 8.6241E-06 93.598 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13701 667 14065 49789;49790 75082;75083 75083 2 YLFIFSVANMR QNLIEELRKCVDTYKYLFIFSVANMRNSKL DTYKYLFIFSVANMRNSKLKDIRNAWKHSR K Y L M R N 1 1 1 0 0 0 0 0 0 1 1 0 1 2 0 1 0 0 1 1 0 0 11 0 1359.7009 A0A024RAE1;Q9UKD2;B4DHZ2 A0A024RAE1 39 49 C1orf33;MRTO4 mRNA turnover protein 4 homolog yes no 2 0.0061165 85.731 3 2 0.49514 0.71002 29.93 2 Median 0.63021 0.87738 NaN 1 0 Median 0.38903 0.57459 NaN 1 0 Median 18328000 15598000 2729600 4409200 3555600 853590 13918000 12042000 1876100 13702 240 14066;14067 49791;49792;49793;49794;49795 75084;75085;75086;75087;75088;75089 75087 95 6 YLFPVPK GFSSRLGKRVSDILRYLFPVPKDDSHRVIT KRVSDILRYLFPVPKDDSHRVITFANQDDY R Y L P K D 0 0 0 0 0 0 0 0 0 0 1 1 0 1 2 0 0 0 1 1 0 0 7 0 862.49528 H0Y714;Q96G21;E7ENR5;B8ZZ47;B9A008 H0Y714 194 200 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 2 0.027093 66.994 1 1 0.78865 1.0968 16.977 2 Median 0.993 1.2367 NaN 1 0 Median 0.62636 0.97274 NaN 1 0 Median 93632000 53830000 39802000 61869000 34953000 26916000 31763000 18876000 12887000 13703 1094 14068 49796;49797 75090;75091;75092;75093 75090 4 YLGFGTPSNLGK FNGLDRIISRRKNEKYLGFGTPSNLGKGRR NEKYLGFGTPSNLGKGRRAAAAADLANRSG K Y L G K G 0 0 1 0 0 0 0 3 0 0 2 1 0 1 1 1 1 0 1 0 0 0 12 0 1252.6452 Q9H072;A0A024R5X7;O76031 Q9H072 438 449 DKFZp586J151;CLPX ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial yes no 2 0.00049226 73.233 1 0.49194 0.61645 NaN 1 Median 0.49194 0.61645 NaN 1 0 Median NaN NaN NaN 0 0 Median 2189200 1443000 746230 2189200 1443000 746230 0 0 0 13704 152 14069 49798 75094;75095 75094 2 YLGGSMDLSTFDFR SPSGKKFRSKPQLARYLGGSMDLSTFDFRT RYLGGSMDLSTFDFRTGKMLMSKMNKSRQR R Y L F R T 0 1 0 2 0 0 0 2 0 0 2 0 1 2 0 2 1 0 1 0 0 0 14 0 1607.729 O95983 O95983 52 65 MBD3 Methyl-CpG-binding domain protein 3 yes yes 2 2.439E-05 77.062 1 0.97756 1.385 NaN 1 Median NaN NaN NaN 0 0 Median 0.97756 1.385 NaN 1 0 Median 12384000 6537900 5846100 0 0 0 12384000 6537900 5846100 13705 1225 14070 49799 75096;75097 75096 461 2 YLGLLENLR QPGRFDEVLIRHQVKYLGLLENLRVRRAGF IRHQVKYLGLLENLRVRRAGFAYRRKYEAF K Y L L R V 0 1 1 0 0 0 1 1 0 0 4 0 0 0 0 0 0 0 1 0 0 0 9 0 1089.6182 F5H6E2;B7Z3E5;O00159;D3DTH7;B7Z9C0;A1L180 F5H6E2 624 632 MYO1C Unconventional myosin-Ic yes no 2 0.0015433 110.31 4 0.68027 0.91508 6.6388 4 Median 0.68027 0.91508 6.6388 4 0 Median NaN NaN NaN 0 0 Median 73291000 44911000 28381000 73291000 44911000 28381000 0 0 0 13706 905 14071 49800;49801;49802;49803 75098;75099;75100;75101;75102;75103;75104;75105 75102 8 YLGLLENVR AAHIFNEALVCHQIRYLGLLENVRVRRAGY VCHQIRYLGLLENVRVRRAGYAFRQAYEPC R Y L V R V 0 1 1 0 0 0 1 1 0 0 3 0 0 0 0 0 0 0 1 1 0 0 9 0 1075.6026 E9PDF6;B0I1S9;O43795;B2R643;Q9UBC5;G3V342;B4DTV4 E9PDF6 618 626 MYO1B;MYO1A Unconventional myosin-Ib;Unconventional myosin-Ia yes no 2 0.02567 57.177 2 1.4836 2.0329 5.9528 2 Median 1.4836 2.0329 5.9528 2 0 Median NaN NaN NaN 0 0 Median 12876000 7004100 5872000 12876000 7004100 5872000 0 0 0 13707 665 14072 49804;49805 75106;75107 75106 2 YLGNTVDLSSFDFR SPSGKKFRSKPQLARYLGNTVDLSSFDFRT RYLGNTVDLSSFDFRTGKMMPSKLQKNKQR R Y L F R T 0 1 1 2 0 0 0 1 0 0 2 0 0 2 0 2 1 0 1 1 0 0 14 0 1632.7784 Q9UBB5;X6RBL6;A0A024R2B8 Q9UBB5 196 209 MBD2 Methyl-CpG-binding domain protein 2 yes no 2 6.2569E-22 140.39 4 2 0.77429 1.0425 36.601 6 Median 0.68587 0.91098 13.898 4 0 Median 1.18 1.8739 3.0912 2 0 Median 143450000 74312000 69142000 69706000 40333000 29374000 73748000 33980000 39769000 13708 1781 14073 49806;49807;49808;49809;49810;49811 75108;75109;75110;75111;75112;75113;75114;75115;75116 75112 9 YLGPACDLTLFDFK SPTGDRIRSKVELTRYLGPACDLTLFDFKQ RYLGPACDLTLFDFKQGILCYPAPKAHPVA R Y L F K Q 1 0 0 2 1 0 0 1 0 0 3 1 0 2 1 0 1 0 1 0 0 0 14 0 1658.8014 B4DUR3;A0A0A0MS90;A8K654;B4DI41;Q9UIS9 B4DUR3 52 65 MBD1 Methyl-CpG-binding domain protein 1 yes no 2 3.7178E-14 110.86 2 0.73693 0.92526 47.786 2 Median 0.73693 0.92526 47.786 2 0 Median NaN NaN NaN 0 0 Median 15705000 8445600 7259600 15705000 8445600 7259600 0 0 0 13709 395 14074 49812;49813 75117;75118;75119 75119 3 YLGYLEQLLR VEQKHIQKEDVPSERYLGYLEQLLRLKKYK VPSERYLGYLEQLLRLKKYKVPQLEIVPNS R Y L L R L 0 1 0 0 0 1 1 1 0 0 4 0 0 0 0 0 0 0 2 0 0 0 10 0 1266.6972 CON__P02662 CON__P02662 91 100 yes yes 2 0.00033428 99.442 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4949800 4949800 0 4949800 4949800 0 0 0 0 + 13710 950 14075 49814;49815 75120;75121;75122;75123 75122 4 YLIANATNPESK ELRSICTTVLELLDKYLIANATNPESKVFY LDKYLIANATNPESKVFYLKMKGDYFRYLA K Y L S K V 2 0 2 0 0 0 1 0 0 1 1 1 0 0 1 1 1 0 1 0 0 0 12 0 1319.6721 P27348;E9PG15;B4DMT8;Q53S41 P27348 104 115 YWHAQ 14-3-3 protein theta yes no 2 0.00087158 110.39 1 0.33325 0.41954 NaN 1 Median 0.33325 0.41954 NaN 1 0 Median NaN NaN NaN 0 0 Median 3596400 2542200 1054200 3596400 2542200 1054200 0 0 0 13711 1300 14076 49816 75124 75124 1 YLIGAAPIAYGLPVSLR LLYYVNQARQAPRLKYLIGAAPIAYGLPVS IGAAPIAYGLPVSLR_______________ K Y L L R - 3 1 0 0 0 0 0 2 0 2 3 0 0 0 2 1 0 0 2 1 0 0 17 0 1773.0189 Q14674 Q14674 2104 2120 ESPL1 Separin yes yes 2 0.00076264 71.548 2 0.46279 0.60645 31.653 2 Median 0.46279 0.60645 31.653 2 0 Median NaN NaN NaN 0 0 Median 2493300 1647400 845900 2493300 1647400 845900 0 0 0 13712 1490 14077 49817;49818 75125;75126;75127 75126 3 YLIGELVSSK WENIATILEAKCALKYLIGELVSSKIQVSK KCALKYLIGELVSSKIQVSKLESSLKQSKT K Y L S K I 0 0 0 0 0 0 1 1 0 1 2 1 0 0 0 2 0 0 1 1 0 0 10 0 1107.6176 Q59HG1;O95239;B4DYE2;Q2VIQ3;B3KNC0 Q59HG1 872 881 KIF4A;KIF4B Kinesin-like protein;Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.0021374 72.643 3 2 0.81425 1.015 13.045 5 Median 0.81576 1.0235 2.9299 3 0 Median 0.52945 0.82032 2.706 2 0 Median 164140000 94355000 69781000 112840000 61530000 51311000 51295000 32825000 18471000 13713 1216 14078 49819;49820;49821;49822;49823 75128;75129;75130;75131;75132;75133 75131 6 YLINGVNANNTR EITVTRQVVIGGRNKYLINGVNANNTRVQD RNKYLINGVNANNTRVQDLFCSVGLNVNNP K Y L T R V 1 1 4 0 0 0 0 1 0 1 1 0 0 0 0 0 1 0 1 1 0 0 12 0 1347.6895 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72;Q6IPS5;A0JLM9;Q32Q15;Q05D74;Q6P712 A0A024R158 115 126 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.039937 33.744 1 0.5888 0.78211 NaN 1 Median 0.5888 0.78211 NaN 1 0 Median NaN NaN NaN 0 0 Median 14577000 8371700 6205300 14577000 8371700 6205300 0 0 0 13714 50 14079 49824 75134 75134 1 YLLEQLK KEEKCCRKDCLKLMKYLLEQLKERFKDKKH KDCLKLMKYLLEQLKERFKDKKHLDKFSSY K Y L L K E 0 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 0 0 1 0 0 0 7 0 905.52222 Q8N884 Q8N884 415 421 MB21D1 Cyclic GMP-AMP synthase yes yes 2 0.03253 95.793 3 1.0548 1.3341 7.164 3 Median 1.0548 1.3341 7.164 3 0 Median NaN NaN NaN 0 0 Median 91386000 42896000 48490000 91386000 42896000 48490000 0 0 0 13715 1643 14080 49825;49826;49827 75135;75136;75137;75138 75135 4 YLLGDMEGR STIVCHNRVDPNGSRYLLGDMEGRLFMLLL DPNGSRYLLGDMEGRLFMLLLEKEEQMDGT R Y L G R L 0 1 0 1 0 0 1 2 0 0 2 0 1 0 0 0 0 0 1 0 0 0 9 0 1052.4961 Q16531;B4DSA8;F5GY55;B7Z2A1 Q16531 271 279 DDB1 DNA damage-binding protein 1 yes no 2 0.018337 43.083 1 0.72293 1.0627 NaN 1 Median NaN NaN NaN 0 0 Median 0.72293 1.0627 NaN 1 0 Median 14510000 8012900 6496900 0 0 0 14510000 8012900 6496900 13716 1520 14081 49828 75139 75139 702 1 YLLQEQLK LGREVEEKIKQTHRKYLLQEQLKIIKKELG IKQTHRKYLLQEQLKIIKKELGLEKDDKDA K Y L L K I 0 0 0 0 0 2 1 0 0 0 3 1 0 0 0 0 0 0 1 0 0 0 8 0 1033.5808 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0;K7ER27;A4VCH6 K7EJE8 264 271 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 2 0.019653 58.981 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2384700 2384700 0 2384700 2384700 0 0 0 0 13717 780 14082 49829 75140 75140 1 YLMEEDEDAYK HRKHIMGQNVADYMRYLMEEDEDAYKKQFS DYMRYLMEEDEDAYKKQFSQYIKNSVTPDM R Y L Y K K 1 0 0 2 0 0 3 0 0 0 1 1 1 0 0 0 0 0 2 0 0 0 11 0 1404.5755 A2RUM7;P46777;B3KTM6;Q59GX9 A2RUM7 210 220 RPL5 60S ribosomal protein L5 yes no 2 0.040904 45.022 1 0.61265 0.93064 NaN 1 Median NaN NaN NaN 0 0 Median 0.61265 0.93064 NaN 1 0 Median 10566000 7210600 3355200 0 0 0 10566000 7210600 3355200 13718 540 14083 49830 75141 75141 190 0 YLMEEDEDAYKK HRKHIMGQNVADYMRYLMEEDEDAYKKQFS YMRYLMEEDEDAYKKQFSQYIKNSVTPDMM R Y L K K Q 1 0 0 2 0 0 3 0 0 0 1 2 1 0 0 0 0 0 2 0 0 0 12 1 1532.6705 A2RUM7;P46777;B3KTM6;Q59GX9 A2RUM7 210 221 RPL5 60S ribosomal protein L5 yes no 2;3 2.9224E-19 189.18 16 3 0.77284 0.95951 12.397 16 Median 0.83191 1.0364 13.418 13 0 Median 0.58243 0.94619 2.1583 3 0 Plateau 441930000 276930000 165000000 297840000 185540000 112300000 144090000 91392000 52694000 13719 540 14084;14085 49831;49832;49833;49834;49835;49836;49837;49838;49839;49840;49841;49842;49843;49844;49845;49846;49847;49848;49849 75142;75143;75144;75145;75146;75147;75148;75149;75150;75151;75152;75153;75154;75155;75156;75157;75158;75159;75160;75161;75162;75163;75164;75165;75166;75167 75145 190 26 YLNEQLYSGPSSAAQR LRARMAQRLDGARFRYLNEQLYSGPSSAAQ LNEQLYSGPSSAAQRLFQEDPEAFLLYHRG R Y L Q R L 2 1 1 0 0 2 1 1 0 0 2 0 0 0 1 3 0 0 2 0 0 0 16 0 1782.8537 O43159;E9PPY3 O43159 253 268 RRP8 Ribosomal RNA-processing protein 8 yes no 2 2.4709E-18 160.56 3 2 0.45391 0.6305 NaN 1 Median 0.45391 0.6305 NaN 1 0 Median NaN NaN NaN 0 0 Median 20649000 19564000 1085200 8702500 7617200 1085200 11946000 11946000 0 13720 1181 14086 49850;49851;49852;49853;49854 75168;75169;75170;75171;75172;75173;75174;75175;75176 75169 9 YLNFFTK TIEMNEPVQLTFALRYLNFFTKATPLSSTV VQLTFALRYLNFFTKATPLSSTVTLSMSAD R Y L T K A 0 0 1 0 0 0 0 0 0 0 1 1 0 2 0 0 1 0 1 0 0 0 7 0 931.48035 Q6FI35;Q6FHF5;P12004 Q6FI35 211 217 PCNA Proliferating cell nuclear antigen yes no 2 0.014861 92.467 3 2 0.54119 0.67346 18.707 5 Median 0.53726 0.66771 3.6661 3 0 Median 0.60765 0.91948 3.5613 2 0 Median 115860000 74403000 41457000 87163000 56388000 30774000 28697000 18014000 10682000 13721 1259 14087 49855;49856;49857;49858;49859 75177;75178;75179;75180;75181;75182;75183 75180 7 YLNPLQTDAAENNVCDINSVHGLFATGTIEGR GASSEVYRLNLEQGRYLNPLQTDAAENNVC NSVHGLFATGTIEGRVECWDPRTRNRVGLL R Y L G R V 3 1 4 2 1 1 2 3 1 2 3 0 0 1 1 1 3 0 1 2 0 0 32 0 3488.663 Q9BSC4;B4DS83;H7C1Z3 Q9BSC4 168 199 NOL10 Nucleolar protein 10 yes no 3 6.6376E-75 138.34 4 2 0.76814 1.0534 20.488 5 Median 0.7888 1.0844 15.063 4 0 Median 0.46579 0.76388 NaN 1 0 Median 281750000 184780000 96968000 175670000 98214000 77455000 106080000 86570000 19513000 13722 1710 14088 49860;49861;49862;49863;49864;49865 75184;75185;75186;75187;75188;75189;75190;75191;75192;75193 75187 10 YLNTNPVGGLLEYAR SMMPNKVRKIGELVRYLNTNPVGGLLEYAR YLNTNPVGGLLEYARSHGFAAEFKLVDQSG R Y L A R S 1 1 2 0 0 0 1 2 0 0 3 0 0 0 1 0 1 0 2 1 0 0 15 0 1678.8679 Q59EC0;D3DV75;H0YCK3;A0A024DAK3;P55265;B7Z8Y3 Q59EC0 740 754 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 2.5036E-08 127.37 2 2 3.0287 4.264 15.172 2 Median NaN NaN NaN 0 0 Median 3.0287 4.264 15.172 2 0 Median 35792000 20851000 14941000 14897000 14897000 0 20895000 5954100 14941000 13723 1552 14089 49866;49867;49868;49869 75194;75195;75196;75197 75195 4 YLPDTLLLEECGLLR VDTLDMVFLDHWKDRYLPDTLLLEECGLLR YLPDTLLLEECGLLRKGTVLLADNVICPGA R Y L L R K 0 1 0 1 1 0 2 1 0 0 6 0 0 0 1 0 1 0 1 0 0 0 15 0 1803.9441 A0A140VJG8;P21964;B8XPJ7;E7EMS6;B8XPJ8 A0A140VJG8 197 211 COMT Catechol O-methyltransferase yes no 2 5.5829E-05 101.71 3 0.61957 0.85523 14.293 3 Plateau 0.61957 0.85523 14.293 3 0 Plateau NaN NaN NaN 0 0 Median 8983900 5557800 3426100 8983900 5557800 3426100 0 0 0 13724 495 14090 49870;49871;49872 75198;75199;75200;75201;75202;75203 75198 6 YLQEEVNINR CWQPIMKFINDQYEKYLQEEVNINRKKRIP DQYEKYLQEEVNINRKKRIPDTRVHCCLYF K Y L N R K 0 1 2 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 10 0 1276.6412 A0A0S2Z5W9;A0A024R8Q0;A0A0S2Z5A5;A0A024R8V0;Q9UHD8;K7EK18;K7EL40;K7ER52;K7EIE4;K7EQD7 A0A0S2Z5W9 157 166 SEPT9 Septin-9 yes no 2 0.049669 70.256 1 0.76032 1.0433 NaN 1 Median 0.76032 1.0433 NaN 1 0 Median NaN NaN NaN 0 0 Median 4361700 2008200 2353500 4361700 2008200 2353500 0 0 0 13725 202 14091 49873 75204 75204 0 YLQGTGCIAGLLLPGSQER QATAKDVGSLASVQRYLQGTGCIAGLLLPG TGCIAGLLLPGSQERLSIYEARCKGLLRPG R Y L E R L 1 1 0 0 1 2 1 4 0 1 4 0 0 0 1 1 1 0 1 0 0 0 19 0 2032.0412 P58107;A0A087X1U6;A0A075B730 A0A087X1U6 605 623 EPPK1 Epiplakin no no 2 0.0018312 39.219 1 0.58572 0.79129 NaN 1 Median 0.58572 0.79129 NaN 1 0 Median NaN NaN NaN 0 0 Median 5571200 3984200 1587000 5571200 3984200 1587000 0 0 0 13726 373;1386 14092 49874 75205 75205 1 YLQLAEELIRPER ______________________________ IKYLQLAEELIRPERNTLVVSFVDLEQFNQ K Y L E R N 1 2 0 0 0 1 3 0 0 1 3 0 0 0 1 0 0 0 1 0 0 0 13 1 1628.8886 Q4ZG57;Q14566;B4E0N7 Q4ZG57 10 22 MCM6 DNA replication licensing factor MCM6 yes no 3 0.0017581 34.685 1 1 1.1675 1.571 184.7 2 Median 0.32282 0.42557 NaN 1 0 Median 4.2227 5.799 NaN 1 0 Median 19194000 11166000 8027600 11968000 9558200 2409700 7225800 1608000 5617800 13727 1488 14093 49875;49876 75206;75207 75206 2 YLQQIFESQR KLQDPHEREFVICDKYLQQIFESQRMKFSE VICDKYLQQIFESQRMKFSEIPQRLHALLM K Y L Q R M 0 1 0 0 0 3 1 0 0 1 1 0 0 1 0 1 0 0 1 0 0 0 10 0 1310.6619 A0A024R137;A0A024R102;Q96GM5;F8VUB0;A8K9I5;F8VRQ4 A0A024R137 466 475 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 2 0.031914 47.823 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2226300 0 2226300 2226300 0 2226300 0 0 0 13728 47 14094 49877 75208 75208 1 YLRPPNTSLFVR ______________________________ MSRYLRPPNTSLFVRNVADDTRSEDLRREF R Y L V R N 0 2 1 0 0 0 0 0 0 0 2 0 0 1 2 1 1 0 1 1 0 0 12 1 1461.8092 Q5JRI1;Q53GD7;A0A0S2Z504;O75494;Q6IQ42;R4GMP8 Q5JRI1 4 15 SRSF10;FUSIP1 Serine/arginine-rich splicing factor 10 yes no 3 0.0016747 72.531 2 0.42096 0.57535 3.7837 2 Median 0.42096 0.57535 3.7837 2 0 Median NaN NaN NaN 0 0 Median 37967000 25806000 12162000 37967000 25806000 12162000 0 0 0 13729 474 14095 49878;49879 75209;75210;75211 75210 3 YLSADSGDADDSDADLGSAVK NEEHNVETAEDSEIRYLSADSGDADDSDAD GDADDSDADLGSAVKQLQEFIPNIKDRATS R Y L V K Q 4 0 0 6 0 0 0 2 0 0 2 1 0 0 0 4 0 0 1 1 0 0 21 0 2070.8866 B4DZG2;A0A024R8C1;Q15361 B4DZG2 476 496 TTF1 Transcription termination factor 1 yes no 2 8.1681E-08 68.168 1 1 0.8647 1.1934 NaN 1 Median NaN NaN NaN 0 0 Median 0.8647 1.1934 NaN 1 0 Median 6478200 3447600 3030500 1089700 1089700 0 5388500 2357900 3030500 13730 195 14096 49880;49881 75212;75213 75212 2 YLSFEAEEK LRRFQASQGENLEGKYLSFEAEEKLAEWVL ENLEGKYLSFEAEEKLAEWVLTQREQQLPV K Y L E K L 1 0 0 0 0 0 3 0 0 0 1 1 0 1 0 1 0 0 1 0 0 0 9 0 1114.5183 Q7Z3K3;B4DSK8 Q7Z3K3 1022 1030 POGZ Pogo transposable element with ZNF domain yes no 2 0.025866 48.283 1 3.0763 3.9045 NaN 1 Median 3.0763 3.9045 NaN 1 0 Median NaN NaN NaN 0 0 Median 9505600 3562300 5943300 9505600 3562300 5943300 0 0 0 13731 1614 14097 49882 75214 75214 1 YLTEHPDPNNENIVGYNNK FFRFTADEARDLIQRYLTEHPDPNNENIVG HPDPNNENIVGYNNKKCWPRDARMRLMKHD R Y L N K K 0 0 5 1 0 0 2 1 1 1 1 1 0 0 2 0 1 0 2 1 0 0 19 0 2230.0291 Q6P2Q9 Q6P2Q9 1113 1131 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3 2.7864E-17 139.49 4 2 0.66605 0.82799 37.677 6 Median 0.7104 0.87199 8.8783 4 0 Linear 1.111 1.5827 10.981 2 0 Median 52520000 30754000 21766000 42850000 25955000 16895000 9669700 4799000 4870800 13732 1592 14098 49883;49884;49885;49886;49887;49888 75215;75216;75217;75218;75219;75220;75221;75222;75223;75224;75225;75226;75227 75218 13 YLTSFPIDDR PSFGEAMAYFAMVKRYLTSFPIDDRVQSHI AMVKRYLTSFPIDDRVQSHILHLEHDLVHV R Y L D R V 0 1 0 2 0 0 0 0 0 1 1 0 0 1 1 1 1 0 1 0 0 0 10 0 1225.5979 P07199;Q71VN3 P07199 557 566 CENPB Major centromere autoantigen B yes no 2 0.0019288 73.985 2 1 0.78095 1.0217 7.5585 3 Median 0.818 1.0826 8.1802 2 0 Median 0.69389 0.99508 NaN 1 0 Median 38372000 21330000 17042000 25324000 13815000 11509000 13048000 7515700 5532600 13733 1239 14099 49889;49890;49891 75228;75229;75230 75228 3 YLTVAAVFR DAKNMMAACDPRHGRYLTVAAVFRGRMSMK DPRHGRYLTVAAVFRGRMSMKEVDEQMLNV R Y L F R G 2 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 1 2 0 0 9 0 1038.5862 Q5JP53;Q5SU16;P07437;B7ZAF0;Q6LC01;B4DY90;Q5ST81;B7ZAK1;Q9BUU9;B4E052;B4DMU8;Q96B85;B4DXZ5;Q1KSF8;A4UCT2;Q8IZ29;P68371;Q8N6N5;Q8IWP6;B3KML9;Q96HX0;B4DFH6;P04350;B4DJ43;B4DE77 Q5JP53 292 300 TUBB;XTP3TPATP1;TUBB2C;TUBB4B;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain no no 2 1.859E-05 125.01 6 2 0.4251 0.58457 123.76 6 Median 0.388 0.53588 10.203 4 0 Median 3.5872 5.8788 2.1521 2 0 Median 1479500000 948260000 531240000 1242000000 896770000 345190000 237540000 51484000 186050000 13734 1241;1423;1230 14100 49892;49893;49894;49895;49896;49897;49898;49899 75231;75232;75233;75234;75235;75236;75237;75238;75239;75240;75241;75242;75243;75244;75245;75246;75247;75248;75249;75250 75241 20 YLTVATVFR DAKNMMAACDPRHGRYLTVATVFRGRMSMK DPRHGRYLTVATVFRGRMSMKEVDEQMLAI R Y L F R G 1 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 2 0 1 2 0 0 9 0 1068.5968 Q2NKY5;Q9BV28;B2RBD5;A0A0B4J269;Q13509;Q53G92;Q3ZCR3;Q9BUF5;K7ESM5;B3KS31;B4DP54;B4E386 Q9BV28 266 274 TUBB6;TUBB3 Tubulin beta-3 chain;Tubulin beta-6 chain no no 2 0.0056327 71.379 2 2 0.38881 0.51134 154.52 3 Median 0.37284 0.49915 3.4128 2 0 Median 5.4273 7.2517 NaN 1 0 Median 32921000 16874000 16047000 21324000 16008000 5316400 11597000 865920 10731000 13735 416;1528;1716 14101 49900;49901;49902;49903 75251;75252;75253;75254;75255 75253 5 YLVIDEAHR MLIKEKSVFKKFNWRYLVIDEAHRIKNEKS KKFNWRYLVIDEAHRIKNEKSKLSEIVREF R Y L H R I 1 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 1 1 0 0 9 0 1114.5771 O60264;B7ZAX9;B4DZC0;Q86UA8;A0A0A0MRP6;B7ZLQ5;P28370;Q4W5H1;D7EZH4 O60264 304 312 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 2;3 0.0006037 98.458 4 1 1.8773 2.7765 8.6143 5 Median 1.9962 2.7722 9.9239 4 0 Median 1.7587 2.7765 NaN 1 0 Median 302120000 92930000 209190000 275220000 83437000 191790000 26896000 9493500 17403000 13736 1189 14102 49904;49905;49906;49907;49908 75256;75257;75258;75259;75260;75261;75262;75263;75264 75260 9 YLVLDEADR VDMMERGKIGLDFCKYLVLDEADRMLDMGF GLDFCKYLVLDEADRMLDMGFEPQIRRIVE K Y L D R M 1 1 0 2 0 0 1 0 0 0 2 0 0 0 0 0 0 0 1 1 0 0 9 0 1092.5451 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;Q5S4N1;A0A024R9A4;O15523;B4DLU5;B4E010;B4E132;D6RCM4;Q9NQI0 A0A0D9SFB3 343 351 DDX3X;DDX3Y;DDX4 ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX4 yes no 2 0.0026861 81.548 4 2 0.50342 0.67832 82.018 6 Median 0.48198 0.64364 14.177 4 0 Median 2.0721 2.9612 4.5397 2 0 Median 71089000 42373000 28716000 58619000 38378000 20241000 12470000 3995000 8475300 13737 432 14103 49909;49910;49911;49912;49913;49914 75265;75266;75267;75268;75269;75270;75271;75272;75273 75269 9 YLVLSR VIATPGRLIDVLENRYLVLSRCTYVVLDEA RLIDVLENRYLVLSRCTYVVLDEADRMIDM R Y L S R C 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 1 1 0 0 6 0 749.44357 B3KY11;A0A024R0Z3;Q9BUQ8;A8KA56 B3KY11 517 522 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.031574 130.01 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2100400 2100400 0 2100400 2100400 0 0 0 0 13738 45 14104 49915 75274 75274 1 YLVMDEADR DHLENTKGFNLRALKYLVMDEADRILNMDF NLRALKYLVMDEADRILNMDFETEVDKILK K Y L D R I 1 1 0 2 0 0 1 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 9 0 1110.5016 Q53GJ1;A0A024RAS3;Q9H0S4;Q9H4E3;A4UCU0;F5H1N9 Q53GJ1 163 171 hCG_27698;DDX47;E4-DBP Probable ATP-dependent RNA helicase DDX47 yes no 2 0.012094 51.066 3 0.39972 0.53557 15.404 2 Median NaN NaN NaN 0 0 Median 0.39972 0.53557 15.404 2 0 Median 17663000 13867000 3796000 0 0 0 17663000 13867000 3796000 13739 249 14105 49916;49917;49918 75275;75276;75277 75277 99 3 YLVPDLVQEYIEK STKIRRALRRGQSTRYLVPDLVQEYIEKHN TRYLVPDLVQEYIEKHNLYSSESEDRNAGV R Y L E K H 0 0 0 1 0 1 2 0 0 1 2 1 0 0 1 0 0 0 2 2 0 0 13 0 1607.8447 Q53GL1;A0A024R4E1;Q9HAN9 Q53GL1 238 250 NMNAT1 Nicotinamide-nucleotide adenylyltransferase;Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 yes no 2 0.00043865 84.687 3 0.42519 0.54052 0.21998 2 Median 0.42519 0.54052 0.21998 2 0 Median NaN NaN NaN 0 0 Median 7754300 5783900 1970400 7754300 5783900 1970400 0 0 0 13740 120 14106 49919;49920;49921 75278;75279;75280 75279 3 YLYSSEDYIK ILLWDVDGGLTQIDKYLYSSEDYIKSGALL TQIDKYLYSSEDYIKSGALLACGIVNSGVR K Y L I K S 0 0 0 1 0 0 1 0 0 1 1 1 0 0 0 2 0 0 3 0 0 0 10 0 1279.5972 Q59EG8;Q13200;B4DM22;Q13041;Q9NSM5 Q59EG8 437 446 PSMD2;DKFZp564A2282 26S proteasome non-ATPase regulatory subunit 2 yes no 2 9.5733E-06 145.16 3 1 1.6984 2.2802 217.25 2 Median 0.3862 0.49071 NaN 1 0 Median 7.4691 10.596 NaN 1 0 Median 23415000 16055000 7359800 18838000 15308000 3529900 4576900 747030 3829900 13741 1465 14107 49922;49923;49924;49925 75281;75282;75283;75284 75281 4 YLYTLVITDK KKNKDNVKFKVRCSRYLYTLVITDKEKAEK VRCSRYLYTLVITDKEKAEKLKQSLPPGLA R Y L D K E 0 0 0 1 0 0 0 0 0 1 2 1 0 0 0 0 2 0 2 1 0 0 10 0 1227.6751 A0A024R8P8;P63173;J3KT73;J3QL01 A0A024R8P8 41 50 RPL38 60S ribosomal protein L38 yes no 2 3.9434E-05 101.9 2 2 0.98452 1.4194 42.419 4 Median 0.75924 0.99282 3.8867 2 0 Median 1.2918 2.0624 6.1767 2 0 Median 402010000 221340000 180670000 308420000 180200000 128220000 93589000 41146000 52442000 13742 201 14108 49926;49927;49928;49929 75285;75286;75287;75288;75289;75290 75286 5 YMDVQFDFK NAKTLRNDNSSRFGKYMDVQFDFKGAPVGG SSRFGKYMDVQFDFKGAPVGGHILSYLLEK K Y M F K G 0 0 0 2 0 1 0 0 0 0 0 1 1 2 0 0 0 0 1 1 0 0 9 0 1191.527 F5H6E2;B7Z3E5;O00159;B7Z9C0;I3L204 F5H6E2 177 185 MYO1C Unconventional myosin-Ic yes no 2 0.018913 42.864 1 2.24 3.0591 NaN 1 Median NaN NaN NaN 0 0 Median 2.24 3.0591 NaN 1 0 Median 3514900 1314000 2200900 0 0 0 3514900 1314000 2200900 13743 905 14109 49930 75291 75291 309 1 YMFSRPFR ______________________________ GKRRGTRYMFSRPFRKHGVVPLATYMRIYK R Y M F R K 0 2 0 0 0 0 0 0 0 0 0 0 1 2 1 1 0 0 1 0 0 0 8 1 1102.5382 Q6IAX2;P46778;G3V1B3;M0R181;M0R3I5 Q6IAX2 13 20 RPL21 60S ribosomal protein L21 yes no 3 0.03296 31.934 1 1.1143 1.4002 NaN 1 Median 1.1143 1.4002 NaN 1 0 Median NaN NaN NaN 0 0 Median 4861800 2226600 2635200 4861800 2226600 2635200 0 0 0 13744 1345 14110 49931 75292 75292 1 YMTLNPSTK SLPSKFSDFLLDPYKYMTLNPSTKRKNTGS LLDPYKYMTLNPSTKRKNTGSPDRKPSKKS K Y M T K R 0 0 1 0 0 0 0 0 0 0 1 1 1 0 1 1 2 0 1 0 0 0 9 0 1053.5165 Q9UIG0 Q9UIG0 298 306 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.029194 51.528 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5674300 0 5674300 0 0 0 5674300 0 5674300 13745 1786 14111 49932 75293 75293 1 YMVENHGEDYK KKGNTLSRDLIDYVRYMVENHGEDYKAMAR DYVRYMVENHGEDYKAMARDEKNYYQDTPK R Y M Y K A 0 0 1 1 0 0 2 1 1 0 0 1 1 0 0 0 0 0 2 1 0 0 11 0 1383.5765 Q9Y3C1;D6RIC3;A0A0C4DGU5;A0A087X2G6;Q9P0T8 Q9Y3C1 121 131 NOP16 Nucleolar protein 16 yes no 2 0.040411 44.425 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5109500 5109500 0 0 0 0 5109500 5109500 0 13746 1817 14112 49933 75294 75294 1 YNACILEYK PKGESKDLLFILTAKYNACILEYKQSGESI FILTAKYNACILEYKQSGESIDIITRAHGN K Y N Y K Q 1 0 1 0 1 0 1 0 0 1 1 1 0 0 0 0 0 0 2 0 0 0 9 0 1172.5536 Q16531;B4DSA8;F5GY55;B7Z2A1;F5H2L3;F5GWI0;F5GZY8;F5GYG8 Q16531 84 92 DDB1 DNA damage-binding protein 1 yes no 2 7.7166E-05 101.64 2 1 0.92979 1.1566 4.218 2 Median 0.92979 1.1566 4.218 2 0 Median NaN NaN NaN 0 0 Median 101510000 56424000 45086000 90549000 45464000 45086000 10960000 10960000 0 13747 1520 14113 49934;49935;49936 75295;75296;75297 75297 3 YNEFSVSLLNEDPK VLKDEAMVLHLTLGKYNEFSVSLLNEDPKS KYNEFSVSLLNEDPKSLDIFIKAVHTTKEL K Y N P K S 0 0 2 1 0 0 2 0 0 0 2 1 0 1 1 2 0 0 1 1 0 0 14 0 1653.7886 B2RWN5;Q9H583;A0A024R3R7;A2VDI1;B4E263;B7ZAU8 B2RWN5 1067 1080 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 3.4041E-27 182.23 5 2 0.78162 0.97829 4.9659 5 Median 0.83244 1.0117 3.5598 3 0 Plateau 0.60805 0.9369 0.10809 2 0 Median 114060000 74894000 39170000 62763000 43761000 19002000 51300000 31133000 20167000 13748 748 14114 49937;49938;49939;49940;49941;49942;49943 75298;75299;75300;75301;75302;75303;75304;75305;75306;75307;75308 75302 11 YNEQHVPGSPFTAR SYLPVLPGDYSILVKYNEQHVPGSPFTARV KYNEQHVPGSPFTARVTGDDSMRMSHLKVG K Y N A R V 1 1 1 0 0 1 1 1 1 0 0 0 0 1 2 1 1 0 1 1 0 0 14 0 1601.7587 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3;Q8TES4;Q6NXF2;Q96C61 P21333 1938 1951 FLNA;FLJ00119 Filamin-A yes no 2;3 2.1894E-06 121.92 7 0.96026 1.2927 15.948 5 Median 0.96026 1.2927 15.948 5 0 Median NaN NaN NaN 0 0 Median 136650000 87492000 49154000 136650000 87492000 49154000 0 0 0 13749 1287 14115 49944;49945;49946;49947;49948;49949;49950 75309;75310;75311;75312;75313;75314;75315;75316 75312 8 YNFPLVTLYATLGK GTRAEWMIAAQTCFKYNFPLVTLYATLGKE KYNFPLVTLYATLGKEAVVHGLNESEASYL K Y N G K E 1 0 1 0 0 0 0 1 0 0 3 1 0 1 1 0 2 0 2 1 0 0 14 0 1598.8708 B4DH39;Q8TAF6;O60488;D6RF95 B4DH39 112 125 FACL4;ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 2 0.0010085 57.802 1 0.50221 0.64286 NaN 1 Median 0.50221 0.64286 NaN 1 0 Median NaN NaN NaN 0 0 Median 3717900 2465800 1252100 3717900 2465800 1252100 0 0 0 13750 806 14116 49951 75317 75317 1 YNFPVEVEVPMER KNLLIFENLIDLKRRYNFPVEVEVPMERKK RRYNFPVEVEVPMERKKKYIEIRKEAREAA R Y N E R K 0 1 1 0 0 0 3 0 0 0 0 0 1 1 2 0 0 0 1 3 0 0 13 0 1607.7654 P78527 P78527 1988 2000 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0013697 52.247 4 0.66142 0.93605 16.614 4 Median NaN NaN NaN 0 0 Median 0.66142 0.93605 16.614 4 0 Median 45752000 28481000 17271000 0 0 0 45752000 28481000 17271000 13751 1427 14117 49952;49953;49954;49955 75318;75319;75320;75321 75318 638 4 YNGEPEHIER LTPLILKPFGNSISRYNGEPEHIERNDAPH NSISRYNGEPEHIERNDAPHKNTQEKFNLS R Y N E R N 0 1 1 0 0 0 3 1 1 1 0 0 0 0 1 0 0 0 1 0 0 0 10 0 1242.5629 A0A024R3R5 A0A024R3R5 132 141 LBR no no 2 0.024594 86.882 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13752 106 14118 49956 75322 75322 1 YNGLIHR YSTEPNNLKARNSFRYNGLIHRKTVGVEPA LKARNSFRYNGLIHRKTVGVEPAADGKGVV R Y N H R K 0 1 1 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 7 0 871.46644 P46779;H0YKD8;H0YMF4;Q59F34;H0YLP6 P46779 40 46 RPL28 60S ribosomal protein L28 yes no 2 9.392E-05 150.07 3 2 0.68455 1.0154 4.6238 5 Median 0.72585 0.99532 4.4295 3 0 Median 0.64287 1.041 1.8376 2 0 Median 377350000 219030000 158320000 258430000 148950000 109480000 118920000 70083000 48835000 13753 1346 14119 49957;49958;49959;49960;49961 75323;75324;75325;75326;75327;75328;75329;75330 75327 8 YNGLIHRK YSTEPNNLKARNSFRYNGLIHRKTVGVEPA KARNSFRYNGLIHRKTVGVEPAADGKGVVV R Y N R K T 0 1 1 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 1 0 0 0 8 1 999.5614 P46779;H0YKD8;H0YMF4;Q59F34;H0YLP6 P46779 40 47 RPL28 60S ribosomal protein L28 yes no 2 0.0080779 92.467 3 0.77056 1.0137 0.98881 2 Median 0.77056 1.0137 0.98881 2 0 Median NaN NaN NaN 0 0 Median 46909000 21979000 24929000 46909000 21979000 24929000 0 0 0 13754 1346 14120 49962;49963;49964 75331;75332;75333;75334;75335 75335 5 YNGVFQECCQAEDK HPYFYAPELLYYANKYNGVFQECCQAEDKG KYNGVFQECCQAEDKGACLLPKIETMREKV K Y N D K G 1 0 1 1 2 2 2 1 0 0 0 1 0 1 0 0 0 0 1 1 0 0 14 0 1746.6978 CON__P02769 CON__P02769 184 197 yes yes 2 0.00023564 68.069 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4427800 4427800 0 4427800 4427800 0 0 0 0 + 13755 952 14121 49965;49966 75336;75337;75338 75337 3 YNHMLSATVK TREAITHLLGVALTRYNHMLSATVKIIQML VALTRYNHMLSATVKIIQMLQHFEHLAPVL R Y N V K I 1 0 1 0 0 0 0 0 1 0 1 1 1 0 0 1 1 0 1 1 0 0 10 0 1162.5805 B3KMS0;Q15021;B3KY03;B4E0B7;E7EN77;Q6ZV00;A0PJ76 B3KMS0 234 243 NCAPD2 Condensin complex subunit 1 yes no 2 0.0038301 78.932 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7223300 7223300 0 0 0 0 7223300 7223300 0 13756 757 14122 49967 75339 75339 277 1 YNHPKPNLLYQK QDGVQIRSLSKETTRYNHPKPNLLYQKFVK TTRYNHPKPNLLYQKFVKMATLTSGGEKPN R Y N Q K F 0 0 2 0 0 1 0 0 1 0 2 2 0 0 2 0 0 0 2 0 0 0 12 1 1513.8041 Q5T3I0;A8KAG1;A0A0A0MRK1;E9PAV9;E9PPY4;F2Z3C6;B4DVU2 Q5T3I0 97 108 GPATCH4 G patch domain-containing protein 4 yes no 3 0.00060773 99.568 2 0.86772 1.0792 7.0806 2 Median 0.86772 1.0792 7.0806 2 0 Median NaN NaN NaN 0 0 Median 22189000 11507000 10683000 22189000 11507000 10683000 0 0 0 13757 1568 14123 49968;49969 75340;75341 75340 2 YNIEVVCEYIVK VAEGAPIIPISAQLKYNIEVVCEYIVKKIP QLKYNIEVVCEYIVKKIPVPPRDFTSEPRL K Y N V K K 0 0 1 0 1 0 2 0 0 2 0 1 0 0 0 0 0 0 2 3 0 0 12 0 1527.7643 P41091;Q2VIR3;F8W810 P41091 230 241 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 0.00059449 87.713 2 0.4199 0.54839 21.198 2 Median 0.4199 0.54839 21.198 2 0 Median NaN NaN NaN 0 0 Median 8609900 6243900 2366000 8609900 6243900 2366000 0 0 0 13758 1333 14124 49970;49971 75342;75343;75344;75345 75344 4 YNILGTNTIMDK KTTWVTKHAAENPGKYNILGTNTIMDKMMV PGKYNILGTNTIMDKMMVAGFKKQMADTGK K Y N D K M 0 0 2 1 0 0 0 1 0 2 1 1 1 0 0 0 2 0 1 0 0 0 12 0 1381.6912 Q96BA7;B3KX72;B4DLR3;Q00839;Q7Z4Q5 Q96BA7 422 433 HNRNPU;HNRPU Heterogeneous nuclear ribonucleoprotein U yes no 2 0.033894 75.566 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13557000 13557000 0 13557000 13557000 0 0 0 0 13759 788 14125 49972;49973 75346;75347 75347 2 YNIPHGPVVGSTR YADLSDTELTTLLRRYNIPHGPVVGSTRRL RRYNIPHGPVVGSTRRLYEKKIFEYETQRR R Y N T R R 0 1 1 0 0 0 0 2 1 1 0 0 0 0 2 1 1 0 1 2 0 0 13 0 1395.7259 P50402 P50402 19 31 EMD Emerin yes yes 3 0.0063223 34.326 2 2 0.5718 0.77597 31.393 4 Median 0.43811 0.584 8.737 2 0 Median 0.70284 0.99732 4.0351 2 0 Median 64170000 41845000 22325000 41065000 28127000 12938000 23105000 13718000 9386300 13760 1357 14126 49974;49975;49976;49977 75348;75349;75350;75351;75352;75353 75350 6 YNLDASEEEDSNK KLDEDEDEDDADLSKYNLDASEEEDSNKKK SKYNLDASEEEDSNKKKSNRRSRSKSRSSH K Y N N K K 1 0 2 2 0 0 3 0 0 0 1 1 0 0 0 2 0 0 1 0 0 0 13 0 1512.6216 O95218 O95218 183 195 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 yes yes 2 0.01413 53.237 1 1 0.67003 0.96815 NaN 1 Median NaN NaN NaN 0 0 Median 0.67003 0.96815 NaN 1 0 Median 5108900 2937900 2171000 0 0 0 5108900 2937900 2171000 13761 1214 14127 49978;49979 75354;75355;75356 75354 3 YNLEELYQAVENLCSHK LHEAVRAVQSSTSIRYNLEELYQAVENLCS LEELYQAVENLCSHKVSPMLYKQLRQACED R Y N H K V 1 0 2 0 1 1 3 0 1 0 3 1 0 0 0 1 0 0 2 1 0 0 17 0 2108.9837 Q13619;A0A087WWN2 Q13619 81 97 CUL4A Cullin-4A yes no 3 9.5206E-05 92.427 4 0.66246 0.82614 9.2465 4 Median 0.66246 0.82614 9.2465 4 0 Median NaN NaN NaN 0 0 Median 55422000 33078000 22344000 55422000 33078000 22344000 0 0 0 13762 1474 14128 49980;49981;49982;49983 75357;75358;75359;75360;75361;75362;75363;75364;75365 75365 9 YNLSAGTIK TPLKSRKVIEQRCMRYNLSAGTIKAVTDFV EQRCMRYNLSAGTIKAVTDFVIPECQKKSP R Y N I K A 1 0 1 0 0 0 0 1 0 1 1 1 0 0 0 1 1 0 1 0 0 0 9 0 965.5182 Q6P0N0 Q6P0N0 668 676 MIS18BP1 Mis18-binding protein 1 yes yes 2 0.030774 44.753 1 0.82005 1.0353 NaN 1 Median 0.82005 1.0353 NaN 1 0 Median NaN NaN NaN 0 0 Median 9893400 4621200 5272200 9893400 4621200 5272200 0 0 0 13763 1588 14129 49984 75366 75366 1 YNLSQPSEAPPLAVHDEAEK LQFTLVETLWKTFWRYNLSQPSEAPPLAVH PSEAPPLAVHDEAEKRLPKAILVLLSKFEP R Y N E K R 3 0 1 1 0 1 3 0 1 0 2 1 0 0 3 2 0 0 1 1 0 0 20 0 2194.0542 P22670 P22670 641 660 RFX1 MHC class II regulatory factor RFX1 yes yes 3 0.023415 16.096 1 2 0.48074 0.65305 8.1884 3 Median 0.48074 0.59786 NaN 1 0 Median 0.47688 0.67811 5.3236 2 0 Median 18725000 12675000 6049600 8085800 5843000 2242800 10639000 6832500 3806800 13764 1291 14130 49985;49986;49987 75367;75368;75369 75369 3 YNVPFLTFINK GVQCQTMTVNRQMKRYNVPFLTFINKLDRM QMKRYNVPFLTFINKLDRMGSNPARALQQM R Y N N K L 0 0 2 0 0 0 0 0 0 1 1 1 0 2 1 0 1 0 1 1 0 0 11 0 1354.7285 D3DNL3;F8WAU4;C9IZ01;E5KND7;E5KND5;Q96RP9;A0A0S2Z5W5 D3DNL3 165 175 GFM1 Elongation factor G, mitochondrial yes no 2 0.025804 54.608 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5451600 5451600 0 5451600 5451600 0 0 0 0 13765 933 14131 49988 75370 75370 1 YNVPLNR SEISENTDASGKIEKYNVPLNRLKMMFEKG DASGKIEKYNVPLNRLKMMFEKGEPTQTKI K Y N N R L 0 1 2 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 1 0 0 7 0 874.4661 F8VQE1;B4DN52;Q53GG0;Q9UHB6;F8VRN8 F8VQE1 30 36 LIMA1 LIM domain and actin-binding protein 1 yes no 2 0.01592 109.7 3 0.72406 1.0058 4.7611 3 Plateau 0.72406 1.0058 4.7611 3 0 Plateau NaN NaN NaN 0 0 Median 298460000 175370000 123080000 298460000 175370000 123080000 0 0 0 13766 834 14132 49989;49990;49991 75371;75372;75373;75374;75375 75374 5 YNVSTTPYLQSVK VKTPNTETRTSCLIKYNVSTTPYLQSVKKK IKYNVSTTPYLQSVKKKVQFDGTNSAFKEL K Y N V K K 0 0 1 0 0 1 0 0 0 0 1 1 0 0 1 2 2 0 2 2 0 0 13 0 1498.7668 B2RMQ4;Q8WWK9 B2RMQ4 591 603 CKAP2 Cytoskeleton-associated protein 2 yes no 2 1.6251E-08 136.49 4 2 1.1463 1.4017 25.531 6 Median 1.1781 1.4725 7.0786 4 0 Median 0.59371 0.91714 9.2299 2 0 Median 133500000 71629000 61872000 81806000 38245000 43561000 51695000 33384000 18311000 13767 745 14133 49992;49993;49994;49995;49996;49997 75376;75377;75378;75379;75380;75381;75382;75383;75384;75385;75386;75387;75388 75381 13 YPASTVQILGAEK ARLIAHAGSLTNLAKYPASTVQILGAEKAL AKYPASTVQILGAEKALFRALKTRGNTPKY K Y P E K A 2 0 0 0 0 1 1 1 0 1 1 1 0 0 1 1 1 0 1 1 0 0 13 0 1375.7347 A8K9K6;O00567;A0PJ92;H0YDU4;H0Y653 A8K9K6 321 333 NOP56 Nucleolar protein 56 yes no 2 5.5067E-20 182.92 3 2 0.66816 0.88064 9.7288 5 Median 0.6964 0.91148 2.9157 3 0 Median 0.48297 0.7638 1.3546 2 0 Median 646180000 403440000 242740000 402010000 238870000 163140000 244170000 164570000 79598000 13768 647 14134 49998;49999;50000;50001;50002 75389;75390;75391;75392;75393;75394;75395;75396;75397;75398 75390 10 YPEAQSVASDILR RFKILKAECLAMLGRYPEAQSVASDILRMD GRYPEAQSVASDILRMDSTNADALYVRGLC R Y P L R M 2 1 0 1 0 1 1 0 0 1 1 0 0 0 1 2 0 0 1 1 0 0 13 0 1447.7307 K7EPP7;K7ESP1;B4DKK3;B7Z9W6;Q59EH7;Q99615;K7EIH8;A8K4T2 K7EPP7 136 148 DNAJC7 DnaJ homolog subfamily C member 7 yes no 2 0.025574 42.802 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1988300 1988300 0 1988300 1988300 0 0 0 0 13769 820 14135 50003 75399 75399 1 YPENFFLLR QSLETICLLLAYKIKYPENFFLLRGNHECA LAYKIKYPENFFLLRGNHECASINRIYGFY K Y P L R G 0 1 1 0 0 0 1 0 0 0 2 0 0 2 1 0 0 0 1 0 0 0 9 0 1197.6182 A0A024RBP2;P36873;Q9UPN1;F8VYE8;F8W0W8;F8VR82;A0A087WYY5;P62136;A0A140VJS9;B3KXM2;E9PMD7;V9HW04;P62140;B4DJ75;B7ZB67;E7ETD8;C9J9S3;C9JP48;B4E163 V9HW04 114 122 PPP1CC;PPP1CA;HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit no no 2 2.538E-11 149.4 4 2 0.76931 1.2094 16.924 6 Median 0.84001 1.1659 20.531 4 0 Median 0.74425 1.2094 2.2527 2 0 Median 688020000 376060000 311960000 540260000 293090000 247170000 147760000 82968000 64794000 13770 1396;1397;279 14136 50004;50005;50006;50007;50008;50009 75400;75401;75402;75403;75404;75405;75406;75407;75408;75409;75410;75411;75412;75413 75405 14 YPFESAEAQLLNK GIGVQGLADAFILMRYPFESAEAQLLNKQI MRYPFESAEAQLLNKQIFETIYYGALEASC R Y P N K Q 2 0 1 0 0 1 2 0 0 0 2 1 0 1 1 1 0 0 1 0 0 0 13 0 1508.7511 B4E0I8;B4DNN4;P23921;B4DS95;Q53GZ5;E9PL69;B4DXB0;B4DXD1 B4E0I8 420 432 RRM1 Ribonucleoside-diphosphate reductase;Ribonucleoside-diphosphate reductase large subunit yes no 2 0.00018305 80.737 2 0.44817 0.56845 NaN 1 Median 0.44817 0.56845 NaN 1 0 Median NaN NaN NaN 0 0 Median 8363300 6358300 2004900 8363300 6358300 2004900 0 0 0 13771 839 14137 50010;50011 75414;75415 75415 2 YPIEHGIITNWDDMEK VGDEAQSKRGILTLKYPIEHGIITNWDDME PIEHGIITNWDDMEKIWHHTFYNELRVAPE K Y P E K I 0 0 1 2 0 0 2 1 1 3 0 1 1 0 1 0 1 1 1 0 0 0 16 0 1959.9037 B7Z6P1;P68133;P68032;A8K3K1;D2JYH4;P63267;P62736;B3KW67;Q13707;Q7Z7J6;A6NL76;B4DUI8;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;B7Z6I1 B7Z6P1 71 86 ACTA1;ACTC1;ACTA2;ACTG2 Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle yes no 3 1.1366E-05 64.52 2 2.6091 4.1304 0.5841 2 Median NaN NaN NaN 0 0 Median 2.6091 4.1304 0.5841 2 0 Median 190500000 54545000 135950000 0 0 0 190500000 54545000 135950000 13772 914 14138 50012;50013 75416;75417;75418 75417 315 3 YPLFEGQETGKK DLANGNITWADVEARYPLFEGQETGKKETI EARYPLFEGQETGKKETIEE__________ R Y P K K E 0 0 0 0 0 1 2 2 0 0 1 2 0 1 1 0 1 0 1 0 0 0 12 1 1395.7034 A0A090N8G0;P41250 A0A090N8G0 669 680 GARS Glycine--tRNA ligase yes no 2 0.0049806 52.79 1 0.7015 0.86299 NaN 1 Median 0.7015 0.86299 NaN 1 0 Median NaN NaN NaN 0 0 Median 7393200 4010200 3383000 7393200 4010200 3383000 0 0 0 13773 382 14139 50014 75419 75419 1 YPLLLQSIGQNTEEPTER QLKDMIPTEMQRLTKYPLLLQSIGQNTEEP LLQSIGQNTEEPTEREKVELAAECCREILH K Y P E R E 0 1 1 0 0 2 3 1 0 1 3 0 0 0 2 1 2 0 1 0 0 0 18 0 2087.0535 M0R2C7;M0QYC1;A0A024R0R1;M0QZR4;Q92888;Q49AN3 M0R2C7 23 40 ARHGEF1 Rho guanine nucleotide exchange factor 1 yes no 2 1.4254E-05 121.28 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3119500 3119500 0 3119500 3119500 0 0 0 0 13774 41 14140 50015;50016 75420;75421 75421 2 YPMAVGLNK ______________________________ ______________________________ R Y P N K G 1 0 1 0 0 0 0 1 0 0 1 1 1 0 1 0 0 0 1 1 0 0 9 0 991.51609 Q9Y3U8;J3QSB5;J3KTD3 Q9Y3U8 5 13 RPL36 60S ribosomal protein L36 yes no 2 0.00039331 103.02 6 2 0.84374 1.0377 35.833 7 Median 0.8704 1.068 32.777 6 0 Median 0.45871 0.69437 NaN 1 0 Median 137970000 82290000 55684000 106150000 56610000 49536000 31828000 25680000 6148000 13775 1821 14141;14142 50017;50018;50019;50020;50021;50022;50023;50024 75422;75423;75424;75425;75426;75427;75428;75429;75430;75431 75426 847 10 YPNIELSYEVVDK LTDSQIADVARFCNRYPNIELSYEVVDKDS NRYPNIELSYEVVDKDSIRSGGPVVVLVQL R Y P D K D 0 0 1 1 0 0 2 0 0 1 1 1 0 0 1 1 0 0 2 2 0 0 13 0 1567.777 O75643;A4FU77;B4E150;B4E0P5;Q9UNV9;A2RRQ7;Q7L5W4;Q9P172 O75643 2014 2026 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 3.7398E-06 117.93 3 1 1.0552 1.4537 99.678 2 Median 0.5671 0.71842 NaN 1 0 Median 1.9632 2.9416 NaN 1 0 Median 15280000 4650100 10630000 7555200 2413000 5142200 7724400 2237000 5487400 13776 1206 14143 50025;50026;50027;50028 75432;75433;75434;75435;75436 75434 5 YPNLQVIGGNVVTAAQAK NSIFQINMIKYIKDKYPNLQVIGGNVVTAA LQVIGGNVVTAAQAKNLIDAGVDALRVGMG K Y P A K N 3 0 2 0 0 2 0 2 0 1 1 1 0 0 1 0 1 0 1 3 0 0 18 0 1841.9999 P12268;H0Y4R1;B7Z1G4 P12268 294 311 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2 1.1583E-39 180.61 4 1 0.3683 0.46969 127.55 4 Median 0.34234 0.43113 10.384 3 0 Median 3.8285 5.7879 NaN 1 0 Median 39863000 20063000 19800000 24716000 16166000 8549800 15146000 3896200 11250000 13777 1261 14144 50029;50030;50031;50032;50033 75437;75438;75439;75440;75441;75442;75443;75444 75438 8 YPPFPSDYLALQLPEPSPLRPK SGVPSPYLSSLASSRYPPFPSDYLALQLPE YLALQLPEPSPLRPKREKRPRLPRKLKMAV R Y P P K R 1 1 0 1 0 1 1 0 0 0 4 1 0 1 7 2 0 0 2 0 0 0 22 1 2524.3366 Q8NBZ0;I3L0W8;I3NI13;I3L270 Q8NBZ0 138 159 INO80E INO80 complex subunit E yes no 3 1.3689E-06 97.256 4 1 1.0021 1.3991 18.98 5 Median 0.92917 1.2584 19.188 4 0 Median 1.0021 1.5586 NaN 1 0 Median 29523000 15909000 13614000 21761000 12000000 9760700 7762600 3909300 3853200 13778 1650 14145 50034;50035;50036;50037;50038 75445;75446;75447;75448;75449 75446 5 YPPPTELLDLQPLPVSALR TQLPVSFRHLILPEKYPPPTELLDLQPLPV TELLDLQPLPVSALRNSAFESLYQDKFPFF K Y P L R N 1 1 0 1 0 1 1 0 0 0 5 0 0 0 5 1 1 0 1 1 0 0 19 0 2118.1725 O75643;A4FU77 O75643 1295 1313 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 4.5776E-24 158.93 4 0.67296 0.80818 10.13 4 Linear 0.67296 0.80818 10.13 4 0 Linear NaN NaN NaN 0 0 Median 67234000 43072000 24162000 67234000 43072000 24162000 0 0 0 13779 1206 14146 50039;50040;50041;50042 75450;75451;75452;75453;75454;75455;75456;75457;75458;75459;75460 75455 11 YPSLELER SGASVVAIRKYIIHKYPSLELERRGYLLKQ RKYIIHKYPSLELERRGYLLKQALKRELNR K Y P E R R 0 1 0 0 0 0 2 0 0 0 2 0 0 0 1 1 0 0 1 0 0 0 8 0 1005.5131 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 191 198 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.00021902 125.81 4 2 0.5789 0.79366 6.229 5 Median 0.5836 0.80414 0.77439 3 0 Median 0.43827 0.71509 0.51252 2 0 Median 434850000 278130000 156720000 266980000 163520000 103450000 167880000 114610000 53270000 13780 1565 14147 50043;50044;50045;50046;50047;50048 75461;75462;75463;75464;75465;75466;75467;75468;75469 75463 9 YPSLELERR SGASVVAIRKYIIHKYPSLELERRGYLLKQ KYIIHKYPSLELERRGYLLKQALKRELNRG K Y P R R G 0 2 0 0 0 0 2 0 0 0 2 0 0 0 1 1 0 0 1 0 0 0 9 1 1161.6142 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 191 199 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 3 0.035781 49.536 1 0.56267 0.77745 NaN 1 Median 0.56267 0.77745 NaN 1 0 Median NaN NaN NaN 0 0 Median 6439100 4838600 1600500 6439100 4838600 1600500 0 0 0 13781 1565 14148 50049 75470 75470 1 YPSPFFVFGEK HKSSVNCPFSSQDMKYPSPFFVFGEKIRTR QDMKYPSPFFVFGEKIRTRAISAKGMTLVT K Y P E K I 0 0 0 0 0 0 1 1 0 0 0 1 0 3 2 1 0 0 1 1 0 0 11 0 1316.6441 Q08211;B3KU66 Q08211 1038 1048 DHX9 ATP-dependent RNA helicase A yes no 2 2.6131E-05 95.573 3 1 0.72542 0.94653 19.484 4 Median 0.74313 0.96981 6.8254 3 0 Median 0.44008 0.67603 NaN 1 0 Median 264790000 154010000 110780000 242960000 138750000 104210000 21829000 15260000 6568400 13782 1448 14149 50050;50051;50052;50053 75471;75472;75473;75474;75475;75476;75477;75478;75479 75476 9 YPTQSGKPPLLVSAPSK HLLSQPLFTESQKTKYPTQSGKPPLLVSAP TQSGKPPLLVSAPSKSESALSCLSKQKKKK K Y P S K S 1 0 0 0 0 1 0 1 0 0 2 2 0 0 4 3 1 0 1 1 0 0 17 1 1768.9723 B4DKV2;G3V529;Q9GZR7;F5GYL3;B4E300;A0A087WXU8;Q7Z4X3;B4DGI6 B4DKV2 716 732 DDX24 ATP-dependent RNA helicase DDX24 yes no 3 0.017639 41.367 2 0.71828 0.88636 33.923 2 Median 0.71828 0.88636 33.923 2 0 Median NaN NaN NaN 0 0 Median 10343000 5530500 4812200 10343000 5530500 4812200 0 0 0 13783 822 14150 50054;50055 75480;75481;75482 75481 3 YQADITDLLK KTLLADKGEIRVGNRYQADITDLLKEGEED RVGNRYQADITDLLKEGEEDGRDQSRLETQ R Y Q L K E 1 0 0 2 0 1 0 0 0 1 2 1 0 0 0 0 1 0 1 0 0 0 10 0 1178.6183 E7ESY4;Q13330;A0A024R6P5;Q86TR6 E7ESY4 173 182 MTA1 Metastasis-associated protein MTA1 yes no 2 0.00058299 82.645 1 1.3158 1.9939 NaN 1 Median NaN NaN NaN 0 0 Median 1.3158 1.9939 NaN 1 0 Median 18824000 8458500 10365000 0 0 0 18824000 8458500 10365000 13784 1014 14151 50056 75483;75484 75484 2 YQAECSQFK ENCNKNKFLDQNLQKYQAECSQFKAKLASL DQNLQKYQAECSQFKAKLASLEELKRQAEL K Y Q F K A 1 0 0 0 1 2 1 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 9 0 1159.4968 P15924;Q4LE79;B4E2A0;B4DKX6 P15924 1065 1073 DSP;DSP variant protein Desmoplakin yes no 2 0.0032204 77.732 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3553400 3553400 0 3553400 3553400 0 0 0 0 13785 1270 14152 50057 75485 75485 1 YQAEIPDR KTLLADQGEIRVGCKYQAEIPDRLVEGESD EIRVGCKYQAEIPDRLVEGESDNRNQQKME K Y Q D R L 1 1 0 1 0 1 1 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 8 0 990.47706 A0A024R534;O94776 A0A024R534 153 160 MTA2 Metastasis-associated protein MTA2 yes no 2 0.010663 72.485 1 1.0039 1.4811 NaN 1 Median NaN NaN NaN 0 0 Median 1.0039 1.4811 NaN 1 0 Median 14003000 7023000 6979700 0 0 0 14003000 7023000 6979700 13786 133 14153 50058 75486;75487;75488 75486 3 YQAEIPDRLVEGESDNR KTLLADQGEIRVGCKYQAEIPDRLVEGESD AEIPDRLVEGESDNRNQQKMEMKVWDPDNP K Y Q N R N 1 2 1 2 0 1 3 1 0 1 1 0 0 0 1 1 0 0 1 1 0 0 17 1 1989.9392 A0A024R534;O94776 A0A024R534 153 169 MTA2 Metastasis-associated protein MTA2 yes no 3 0.0011395 73.296 4 2 0.72455 0.96761 31.259 6 Median 0.78377 1.0506 16.535 4 0 Linear 1.0855 1.5212 5.8917 2 0 Median 64602000 36985000 27618000 48420000 29104000 19315000 16182000 7880000 8302300 13787 133 14154 50059;50060;50061;50062;50063;50064 75489;75490;75491;75492;75493;75494;75495;75496 75491 8 YQAEIPDRLVEGESDNRNQQK KTLLADQGEIRVGCKYQAEIPDRLVEGESD DRLVEGESDNRNQQKMEMKVWDPDNPLTDR K Y Q Q K M 1 2 2 2 0 3 3 1 0 1 1 1 0 0 1 1 0 0 1 1 0 0 21 2 2488.1942 A0A024R534;O94776 A0A024R534 153 173 MTA2 Metastasis-associated protein MTA2 yes no 4 0.00028891 45.357 2 2 0.88816 1.179 25.725 4 Median 0.80029 0.99639 3.807 2 0 Median 1.0351 1.5121 15.196 2 0 Median 38590000 18471000 20119000 31182000 15595000 15588000 7407400 2876100 4531300 13788 133 14155 50065;50066;50067;50068 75497;75498;75499;75500;75501;75502 75500 6 YQAPDIDVQLSSELTDSLR REAEADKPRRLGRLKYQAPDIDVQLSSELT DIDVQLSSELTDSLRTLKPEGNILRDRFKS K Y Q L R T 1 1 0 3 0 2 1 0 0 1 3 0 0 0 1 3 1 0 1 1 0 0 19 0 2149.0539 Q7L4X7;Q96CS0;Q53YP0;B4E1N4;Q9NZM5;B4DVK1;M0QZ34;M0QYZ9;Q9P0B0;M0QZU5;Q9H7J4 Q7L4X7 407 425 GLTSCR2;FLJ00085 Glioma tumor suppressor candidate region gene 2 protein yes no 2 6.9208E-40 180.27 4 0.73978 0.99983 10.779 4 Median 0.73978 0.99983 10.779 4 0 Median NaN NaN NaN 0 0 Median 45244000 27752000 17492000 45244000 27752000 17492000 0 0 0 13789 887 14156 50069;50070;50071;50072 75503;75504;75505;75506;75507;75508;75509;75510 75504 8 YQAVTATLEEK KFAYLGRLAHEVGWKYQAVTATLEEKRKEK VGWKYQAVTATLEEKRKEKAKIHYRKKKQL K Y Q E K R 2 0 0 0 0 1 2 0 0 0 1 1 0 0 0 0 2 0 1 1 0 0 11 0 1251.6347 Q53H34;P40429;Q5QTS3;M0QYS1;Q8J015;Q6NVV1;Q9BSQ6 Q53H34 149 159 RPL13A;RPL13a;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 no no 2 6.0909E-23 173.37 5 2 0.74256 0.99581 3.6191 6 Median 0.75527 1.0003 4.6263 4 0 Median 0.62454 0.99581 0.023803 2 0 Median 2160000000 1213100000 946920000 2020700000 1129400000 891290000 139310000 83682000 55630000 13790 1332;1712 14157 50073;50074;50075;50076;50077;50078;50079 75511;75512;75513;75514;75515;75516;75517;75518;75519;75520;75521;75522;75523;75524;75525;75526;75527 75517 17 YQDIIHSIHLAR QGIRESQLKERLEKRYQDIIHSIHLARKPN EKRYQDIIHSIHLARKPNLGLKSCDGNQEL R Y Q A R K 1 1 0 1 0 1 0 0 2 3 1 0 0 0 0 1 0 0 1 0 0 0 12 0 1464.7837 Q9UIG0 Q9UIG0 1025 1036 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3;4 0.0037827 80.871 6 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84385000 0 84385000 84385000 0 84385000 0 0 0 13791 1786 14158 50080;50081;50082;50083;50084;50085 75528;75529;75530;75531;75532;75533;75534;75535;75536 75536 9 YQEAAPNVANNTGPHAASCFGAK NLSYQVHREIPQAERYQEAAPNVANNTGPH ANNTGPHAASCFGAKKGKGKKPIEDPANDT R Y Q A K K 6 0 3 0 1 1 1 2 1 0 0 1 0 1 2 1 1 0 1 1 0 0 23 0 2374.076 Q7KZJ3;A0A024R4Z0;A0A024R4Y7;Q96FS1;Q68DU0;C9JZR2;O60716 Q7KZJ3 277 299 CTNND1;DKFZp781O2021 Catenin delta-1 yes no 3 9.5284E-07 97.352 2 0.40866 0.52883 NaN 1 Median 0.40866 0.52883 NaN 1 0 Median NaN NaN NaN 0 0 Median 7924400 5906000 2018400 7924400 5906000 2018400 0 0 0 13792 130 14159 50086;50087 75537;75538;75539;75540;75541 75537 5 YQEQLVQEQELAK VDKQLASELEYDMKKYQEQLVQEQELAKHA KKYQEQLVQEQELAKHADVAGTAGGAEVAP K Y Q A K H 1 0 0 0 0 4 3 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 13 0 1604.8046 P42695;Q96FA6;E9PQA3 P42695 1259 1271 NCAPD3 Condensin-2 complex subunit D3 yes no 2 4.0123E-52 234.67 4 2 0.67364 0.87203 7.2062 6 Median 0.7195 0.91294 8.3449 4 0 Median 0.56178 0.84886 0.22641 2 0 Median 51897000 32142000 19755000 23070000 12338000 10731000 28827000 19804000 9023400 13793 1338 14160 50088;50089;50090;50091;50092;50093 75542;75543;75544;75545;75546;75547;75548;75549;75550;75551;75552 75545 11 YQEVTNNLEFAK KGERLNQDQLDAVSKYQEVTNNLEFAKELQ VSKYQEVTNNLEFAKELQRSFMALSQDIQK K Y Q A K E 1 0 2 0 0 1 2 0 0 0 1 1 0 1 0 0 1 0 1 1 0 0 12 0 1454.7042 E9PLA9;B4DSF8;G3V153;B3KXU8;Q14444 E9PLA9 99 110 CAPRIN1 Caprin-1 yes no 2 0.0020379 57.348 1 0.49103 0.6201 NaN 1 Median 0.49103 0.6201 NaN 1 0 Median NaN NaN NaN 0 0 Median 8840000 4689300 4150700 8840000 4689300 4150700 0 0 0 13794 789 14161 50094 75553 75553 1 YQFDAFYGER SLEIANWRNHQETLKYQFDAFYGERSTQQD QETLKYQFDAFYGERSTQQDIYAGSVQPIL K Y Q E R S 1 1 0 1 0 1 1 1 0 0 0 0 0 2 0 0 0 0 2 0 0 0 10 0 1294.5619 Q14807;A0A024R632;B7Z9T5;H3BRB3;H3BTH5 Q14807 88 97 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 0.0048661 78.264 4 1 0.91751 1.229 21.207 5 Median 0.92744 1.2349 9.167 4 0 Median 0.54495 0.7987 NaN 1 0 Median 58830000 32894000 25935000 45438000 24201000 21236000 13392000 8692800 4699200 13795 1497 14162 50095;50096;50097;50098;50099 75554;75555;75556;75557;75558;75559;75560 75560 7 YQFLADSDTSLMLSLNHPLAPVR ELFHQFVSLSTSGGKYQFLADSDTSLMLSL TSLMLSLNHPLAPVRILAMNHLKKIMKTSK K Y Q V R I 2 1 1 2 0 1 0 0 1 0 5 0 1 1 2 3 1 0 1 1 0 0 23 0 2587.3105 B2RWN5;Q9H583;Q5T3Q7 B2RWN5 473 495 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 1.0169E-05 71.001 3 0.69921 0.9851 53.326 2 Median 0.69921 0.9851 53.326 2 0 Median NaN NaN NaN 0 0 Median 9348600 4085000 5263600 9348600 4085000 5263600 0 0 0 13796 748 14163 50100;50101;50102 75561;75562;75563;75564 75564 4 YQGVNLYIK LKRKFEQLKQERISRYQGVNLYIKNLDDTI QERISRYQGVNLYIKNLDDTIDDEKLRKEF R Y Q I K N 0 0 1 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 2 1 0 0 9 0 1096.5917 B1ANR0;Q6IQ30;Q13310;H0Y5F5;Q15164;H0YEU6;Q147Y3;Q3B867;Q53GL4 B1ANR0 291 299 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 yes no 2 0.0024402 80.229 2 0.15204 0.19192 NaN 1 Median 0.15204 0.19192 NaN 1 0 Median NaN NaN NaN 0 0 Median 19215000 18185000 1029500 19215000 18185000 1029500 0 0 0 13797 676 14164 50103;50104 75565;75566 75565 2 YQGVNLYVK LKRKFEQMKQDRITRYQGVNLYVKNLDDGI QDRITRYQGVNLYVKNLDDGIDDERLRKEF R Y Q V K N 0 0 1 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 2 2 0 0 9 0 1082.576 A0A087WTT1;A0A024R9C1;P11940;A0A024R9E2;E7EQV3;B4DZW4;E7ERJ7;B4DQX0;B3KT93;H0YAR2;H0YAP2;Q4VXU2 A0A087WTT1 266 274 PABPC1;PABPC1L Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like yes no 2 0.021621 51.335 1 1 0.70833 0.95585 174.1 2 Median 0.21988 0.2791 NaN 1 0 Median 2.2819 3.2736 NaN 1 0 Median 16731000 11058000 5672900 11856000 9809500 2046300 4874900 1248300 3626600 13798 217 14165 50105;50106 75567;75568 75568 2 YQHYGQQGQGYCQPDAAVR RHHAQETLHYQNLAKYQHYGQQGQGYCQPD GQQGQGYCQPDAAVRTPEQYYQTFSPSSSH K Y Q V R T 2 1 0 1 1 5 0 3 1 0 0 0 0 0 1 0 0 0 3 1 0 0 19 0 2224.9708 Q7Z5J4;A8MXE8 Q7Z5J4 311 329 RAI1 Retinoic acid-induced protein 1 yes no 3 4.2292E-05 113.33 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1884400 1884400 0 1884400 1884400 0 0 0 0 13799 1617 14166 50107 75569 75569 1 YQIDPDACFSAK WTAGNSNTRFGIAAKYQIDPDACFSAKVNN AAKYQIDPDACFSAKVNNSSLIGLGYTQTL K Y Q A K V 2 0 0 2 1 1 0 0 0 1 0 1 0 1 1 1 0 0 1 0 0 0 12 0 1413.6235 A0A1L1UHR1;P21796;B3KTS5;B4DEI3 A0A1L1UHR1 225 236 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2 3.4492E-05 123.51 4 2 0.68836 0.88724 68.227 6 Median 0.66866 0.84632 6.0781 4 0 Median 2.0945 3.1663 4.0937 2 0 Median 333070000 187410000 145670000 297490000 176980000 120510000 35585000 10427000 25158000 13800 524 14167 50108;50109;50110;50111;50112;50113 75570;75571;75572;75573;75574;75575;75576;75577;75578;75579;75580 75576 11 YQIHIPLPPK TDIEEGMRVGVDRNKYQIHIPLPPKIDPTV VDRNKYQIHIPLPPKIDPTVTMMQVEEKPD K Y Q P K I 0 0 0 0 0 1 0 0 1 2 1 1 0 0 3 0 0 0 1 0 0 0 10 0 1204.6968 A0A140VK70;P35998;Q75L23 A0A140VK70 147 156 PSMC2 26S protease regulatory subunit 7 yes no 3 0.049303 57.347 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1119500 1119500 0 1119500 1119500 0 0 0 0 13801 510 14168 50114 75581 75581 1 YQILPLHSQIPR MQKHLEMNPHFGSHRYQILPLHSQIPREEQ SHRYQILPLHSQIPREEQRKVFDPVPVGVT R Y Q P R E 0 1 0 0 0 2 0 0 1 2 2 0 0 0 2 1 0 0 1 0 0 0 12 0 1463.8249 Q08211 Q08211 681 692 DHX9 ATP-dependent RNA helicase A yes yes 2;3 8.9657E-05 123.11 8 4 0.66702 0.90779 17.103 11 Median 0.71123 0.98703 8.4109 7 0 Median 0.46975 0.77211 6.7379 4 0 Linear 1066100000 648350000 417760000 784720000 465140000 319580000 281390000 183220000 98178000 13802 1448 14169 50115;50116;50117;50118;50119;50120;50121;50122;50123;50124;50125;50126 75582;75583;75584;75585;75586;75587;75588;75589;75590;75591;75592;75593;75594;75595;75596;75597;75598;75599;75600;75601 75588 20 YQKSTELLIR HRYRPGTVALREIRRYQKSTELLIRKLPFQ REIRRYQKSTELLIRKLPFQRLVREIAQDF R Y Q I R K 0 1 0 0 0 1 1 0 0 1 2 1 0 0 0 1 1 0 1 0 0 0 10 1 1249.703 B2R4P9;P84243;B4E380;K7EK07;Q16695;Q6NXT2;B2R6Y1;K7EMV3;B4DEB1;K7ES00;K7EP01;P68431;Q5TEC6;Q71DI3 B2R4P9 55 64 H3F3A;H3F3B;HIST3H3;H3F3C;HIST1H3A;HIST2H3PS2;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.3C;Histone H3.1;Histone H3.2 no no 3 0.0059793 39.918 2 0.68977 1.1897 0.24405 2 Median NaN NaN NaN 0 0 Median 0.68977 1.1897 0.24405 2 0 Median 107040000 60939000 46101000 0 0 0 107040000 60939000 46101000 13803 685;1424;1605;1577 14170 50127;50128 75602;75603 75602 2 YQLDPTASISAK WTSGTNCTRFGIAAKYQLDPTASISAKVNN AAKYQLDPTASISAKVNNSSLIGVGYTQTL K Y Q A K V 2 0 0 1 0 1 0 0 0 1 1 1 0 0 1 2 1 0 1 0 0 0 12 0 1292.6612 A0A024QZT0;P45880;A0A0A0MR02;A0A024QZN9;B4DKM5 A0A024QZT0 236 247 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2 2.0473E-12 132.32 4 1 0.64178 0.84168 93.058 3 Median 0.62416 0.8176 4.1045 2 0 Median 2.5224 4.0945 NaN 1 0 Median 458710000 300600000 158110000 403640000 284360000 119270000 55074000 16237000 38837000 13804 20 14171 50129;50130;50131;50132;50133 75604;75605;75606;75607;75608;75609;75610 75606 7 YQLEIPENFTTR IGCRTIVYWGIGRNRYQLEIPENFTTRNLP RNRYQLEIPENFTTRNLPEEYELKSTKKGC R Y Q T R N 0 1 1 0 0 1 2 0 0 1 1 0 0 1 1 0 2 0 1 0 0 0 12 0 1509.7464 P52701;A0A087WWJ1;Q1L838 P52701 977 988 MSH6;GTBP DNA mismatch repair protein Msh6 yes no 2 0.0023935 72.006 3 0.33331 0.47638 NaN 1 Median 0.33331 0.47638 NaN 1 0 Median NaN NaN NaN 0 0 Median 7792400 6979600 812860 7792400 6979600 812860 0 0 0 13805 1365 14172 50134;50135;50136 75611;75612;75613;75614 75613 4 YQLLQLVEPFGVISNHLILNK RVVHIMDFQRGKNLRYQLLQLVEPFGVISN VEPFGVISNHLILNKINEAFIEMATTEDAQ R Y Q N K I 0 0 2 0 0 2 1 1 1 2 5 1 0 1 1 1 0 0 1 2 0 0 21 0 2437.3733 A0A0R4J2E8;A8MXP9;P43243;D6REM6;Q68D11;D6R991;H0Y8T4;Q5CZA7;B3KM87;B4DRS1;B4DF66;D6RBI2;D6RE02;D6RIA2;D6RBK5 A0A0R4J2E8 413 433 MATR3;DKFZp686K23100;DKFZp686K0542 Matrin-3 yes no 3 3.512E-48 180.39 4 0.57554 0.75556 30.546 3 Plateau 0.57554 0.75556 30.546 3 0 Plateau NaN NaN NaN 0 0 Median 295450000 202680000 92774000 295450000 202680000 92774000 0 0 0 13806 445 14173 50137;50138;50139;50140 75615;75616;75617;75618;75619 75615 5 YQPLASTASDNDFVTPEPR SQRAPSAKKPSTGSRYQPLASTASDNDFVT ASTASDNDFVTPEPRRTTRRHPNTQQRASK R Y Q P R R 2 1 1 2 0 1 1 0 0 0 1 0 0 1 3 2 2 0 1 1 0 0 19 0 2106.9858 B3KMS0;Q15021;B3KY03;B4E0B7 B3KMS0 1325 1343 NCAPD2 Condensin complex subunit 1 yes no 2 4.0861E-40 185.27 4 2 0.66117 0.90283 18.083 6 Median 0.68193 0.93391 4.2681 4 0 Median 0.40486 0.65907 4.6141 2 0 Median 352370000 225410000 126970000 208160000 125700000 82459000 144210000 99703000 44506000 13807 757 14174 50141;50142;50143;50144;50145;50146 75620;75621;75622;75623;75624;75625;75626;75627;75628;75629;75630;75631;75632 75621 13 YQPQTASELIGNELAIK SSKDSGTEDMLWTEKYQPQTASELIGNELA PQTASELIGNELAIKKLHSWLKDWKRRAEL K Y Q I K K 2 0 1 0 0 2 2 1 0 2 2 1 0 0 1 1 1 0 1 0 0 0 17 0 1873.9785 Q96QE3;H0UIC2;A0A075B754 Q96QE3 1058 1074 ATAD5 ATPase family AAA domain-containing protein 5 yes no 2 0.0028011 61.423 2 1.1026 1.4089 13.361 2 Median 1.1026 1.4089 13.361 2 0 Median NaN NaN NaN 0 0 Median 5588200 2560700 3027500 5588200 2560700 3027500 0 0 0 13808 1698 14175 50147;50148 75633;75634 75634 2 YQQGDFGYCPR RYILTNRGIAQMLEKYQQGDFGYCPRVYCE MLEKYQQGDFGYCPRVYCENQPMLPIGLSD K Y Q P R V 0 1 0 1 1 2 0 2 0 0 0 0 0 1 1 0 0 0 2 0 0 0 11 0 1389.5772 N0E4C7;Q5SRQ6;P67870;N0E466;Q5SRQ3;N0E472;A0A0G2JM12 N0E4C7 101 111 CSNK2B;CSNK2B-LY6G5B-1181;CSNK2B-LY6G5B--991 Casein kinase II subunit beta yes no 2 3.8492E-07 146.79 5 0.6692 0.89313 12.142 3 Plateau 0.6692 0.89313 12.142 3 0 Plateau NaN NaN NaN 0 0 Median 37847000 22242000 15605000 37847000 22242000 15605000 0 0 0 13809 1162 14176 50149;50150;50151;50152;50153 75635;75636;75637;75638;75639;75640;75641;75642 75635 8 YQQLFEDIR LKKLILSKGKTPALKYQQLFEDIRGQSDIA KTPALKYQQLFEDIRGQSDIAITKDMFEEA K Y Q I R G 0 1 0 1 0 2 1 0 0 1 1 0 0 1 0 0 0 0 1 0 0 0 9 0 1210.5982 B4DLA6;B3KMX0;A0A024R7U6;P33991;A4FS09 B4DLA6 780 788 MCM4 DNA replication licensing factor MCM4 yes no 2 0.025121 52.255 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3112300 0 3112300 0 0 0 3112300 0 3112300 13810 185 14177 50154;50155 75643;75644 75643 2 YQQLFEDIRGQSDIAITK LKKLILSKGKTPALKYQQLFEDIRGQSDIA LFEDIRGQSDIAITKDMFEEALRALADDDF K Y Q T K D 1 1 0 2 0 3 1 1 0 3 1 1 0 1 0 1 1 0 1 0 0 0 18 1 2124.0851 B4DLA6;B3KMX0;A0A024R7U6;P33991;A4FS09 B4DLA6 780 797 MCM4 DNA replication licensing factor MCM4 yes no 3 7.9617E-05 51.147 1 0.34677 0.44722 NaN 1 Median 0.34677 0.44722 NaN 1 0 Median NaN NaN NaN 0 0 Median 8021000 5458500 2562500 8021000 5458500 2562500 0 0 0 13811 185 14178 50156 75645;75646 75646 2 YQQQYLQPLPLTHYELVTDAFGHR PDRRLRVDFADTEHRYQQQYLQPLPLTHYE PLTHYELVTDAFGHRAPDPLRGARDRTPPL R Y Q H R A 1 1 0 1 0 4 1 1 2 0 4 0 0 1 2 0 2 0 3 1 0 0 24 0 2916.4559 A0A087WWP4;Q96T37 A0A087WWP4 489 512 RBM15 Putative RNA-binding protein 15 yes no 4 0.00093206 65.915 3 0.41945 0.57153 NaN 1 Median 0.41945 0.57153 NaN 1 0 Median NaN NaN NaN 0 0 Median 13483000 10321000 3161700 13483000 10321000 3161700 0 0 0 13812 355 14179 50157;50158;50159 75647;75648;75649;75650 75648 4 YQSAPSQAPGNTIER MGRYRNSSWYSSGSRYQSAPSQAPGNTIER YQSAPSQAPGNTIERGQTHSAGTNGTGVSM R Y Q E R G 2 1 1 0 0 2 1 1 0 1 0 0 0 0 2 2 1 0 1 0 0 0 15 0 1617.7747 A0A024R101;Q86XZ4 A0A024R101 488 502 SPATS2 Spermatogenesis-associated serine-rich protein 2 yes no 2 0.017342 42.095 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2926700 0 2926700 0 0 0 2926700 0 2926700 13813 46 14180 50160 75651 75651 1 YQTQPVTLGEVEQVQSGK TRNRIDTRQRRMNARYQTQPVTLGEVEQVQ QPVTLGEVEQVQSGKLIPFSPAVNTSVSTV R Y Q G K L 0 0 0 0 0 4 2 2 0 0 1 1 0 0 1 1 2 0 1 3 0 0 18 0 1990.0007 O95425 O95425 850 867 SVIL Supervillin yes yes 2 1.8127E-19 152 5 1.0527 1.3777 41.303 4 Median 1.0527 1.3777 41.303 4 0 Median NaN NaN NaN 0 0 Median 18287000 8318400 9968900 18287000 8318400 9968900 0 0 0 13814 1220 14181 50161;50162;50163;50164;50165 75652;75653;75654;75655;75656;75657;75658 75653 7 YQYGGLNSGRPVTPPR MCSFQILKPSEKKAKYQYGGLNSGRPVTPP QYGGLNSGRPVTPPRTANPPKKR_______ K Y Q P R T 0 2 1 0 0 1 0 3 0 0 1 0 0 0 3 1 1 0 2 1 0 0 16 1 1760.8958 V9HW04;P62140;B4DJ75 V9HW04 304 319 HEL-S-80p;PPP1CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes no 2;3 1.371E-18 114.69 4 2 0.87533 1.2529 3.9451 6 Median 0.89944 1.2403 3.4961 4 0 Median 0.81421 1.2864 3.1022 2 0 Median 454260000 247670000 206590000 340660000 186640000 154020000 113600000 61031000 52566000 13815 1397 14182 50166;50167;50168;50169;50170;50171 75659;75660;75661;75662;75663;75664;75665;75666;75667;75668;75669;75670;75671 75663 12 YRDIVVR KRLRFSVRQTESAYRYRDIVVRKQDGFTHI RQTESAYRYRDIVVRKQDGFTHILLSTKSS R Y R V R K 0 2 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 2 0 0 7 1 919.52395 Q9Y232;C9JQG7 Q9Y232 341 347 CDYL Chromodomain Y-like protein yes no 2 0.01812 97.798 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17417000 17417000 0 17417000 17417000 0 0 0 0 13816 1802 14183 50172 75672 75672 1 YRPGTVALR RKSAPSTGGVKKPHRYRPGTVALREIRRYQ VKKPHRYRPGTVALREIRRYQKSTELLIRK R Y R L R E 1 2 0 0 0 0 0 1 0 0 1 0 0 0 1 0 1 0 1 1 0 0 9 1 1031.5876 B2R4P9;P84243;B4E380;K7EK07;Q16695;Q6NXT2;B2R6Y1;A8K4Y7;K7EMV3;B4DEB1;K7ES00;K7EP01;Q6TXQ4;P68431;Q5TEC6;Q71DI3 B2R4P9 42 50 H3F3A;H3F3B;HIST3H3;H3F3C;HIST1H3A;HIST2H3PS2;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.3C;Histone H3.1;Histone H3.2 no no 1;2;3 6.1138E-13 183.74 48 6 0.66047 0.88334 9.7008 31 Median 0.66383 0.89254 10.013 28 0 Median 0.56588 0.98592 7.5087 3 0 Plateau 31457000000 22332000000 9125300000 29925000000 21330000000 8595500000 1532000000 1002200000 529800000 13817 685;1424;1605;1577 14184 50173;50174;50175;50176;50177;50178;50179;50180;50181;50182;50183;50184;50185;50186;50187;50188;50189;50190;50191;50192;50193;50194;50195;50196;50197;50198;50199;50200;50201;50202;50203;50204;50205;50206;50207;50208;50209;50210;50211;50212;50213;50214;50215;50216;50217;50218;50219;50220;50221;50222;50223;50224;50225;50226 75673;75674;75675;75676;75677;75678;75679;75680;75681;75682;75683;75684;75685;75686;75687;75688;75689;75690;75691;75692;75693;75694;75695;75696;75697;75698;75699;75700;75701;75702;75703;75704;75705;75706;75707;75708;75709;75710;75711;75712;75713;75714;75715;75716;75717;75718;75719;75720;75721;75722;75723;75724;75725;75726;75727;75728;75729;75730;75731;75732;75733;75734;75735;75736;75737;75738;75739;75740;75741;75742;75743;75744;75745;75746;75747;75748;75749;75750;75751;75752 75705 77 YRPGTVALREIR RKSAPSTGGVKKPHRYRPGTVALREIRRYQ PHRYRPGTVALREIRRYQKSTELLIRKLPF R Y R I R R 1 3 0 0 0 0 1 1 0 1 1 0 0 0 1 0 1 0 1 1 0 0 12 2 1429.8154 B2R4P9;P84243;B4E380;K7EK07;Q16695;Q6NXT2;B2R6Y1;A8K4Y7;K7EMV3;B4DEB1;K7ES00;K7EP01;Q6TXQ4;P68431;Q5TEC6;Q71DI3 B2R4P9 42 53 H3F3A;H3F3B;HIST3H3;H3F3C;HIST1H3A;HIST2H3PS2;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.3C;Histone H3.1;Histone H3.2 no no 3 0.0010391 86.114 4 1 0.71566 0.90448 17.3 5 Median 0.68791 0.85074 18.178 4 0 Median 0.87358 1.0233 NaN 1 0 Median 172100000 101550000 70545000 159420000 95908000 63514000 12675000 5643200 7031600 13818 685;1424;1605;1577 14185 50227;50228;50229;50230;50231 75753;75754;75755;75756;75757;75758 75758 6 YRPGTVALREIRR RKSAPSTGGVKKPHRYRPGTVALREIRRYQ HRYRPGTVALREIRRYQKSTELLIRKLPFQ R Y R R R Y 1 4 0 0 0 0 1 1 0 1 1 0 0 0 1 0 1 0 1 1 0 0 13 3 1585.9165 B2R4P9;P84243;B4E380;K7EK07;Q16695;Q6NXT2;B2R6Y1;A8K4Y7;K7EMV3;B4DEB1;K7ES00;K7EP01;Q6TXQ4;P68431;Q5TEC6;Q71DI3 B2R4P9 42 54 H3F3A;H3F3B;HIST3H3;H3F3C;HIST1H3A;HIST2H3PS2;HIST2H3A Histone H3;Histone H3.3;Histone H3.1t;Histone H3.3C;Histone H3.1;Histone H3.2 no no 4 0.039813 25.53 1 0.70005 0.80639 NaN 1 Median 0.70005 0.80639 NaN 1 0 Median NaN NaN NaN 0 0 Median 26551000 15501000 11050000 26551000 15501000 11050000 0 0 0 13819 685;1424;1605;1577 14186 50232 75759 75759 1 YRTEAHQDVVGR SLKQLYTVTMDVHSRYRTEAHQDVVGRFNE HSRYRTEAHQDVVGRFNERFILSLASCKKC R Y R G R F 1 2 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 1 2 0 0 12 1 1429.7062 Q05CW7;E9PMU0;Q9H0A0;A0A087WV29 Q9H0A0 171 182 NAT10 N-acetyltransferase 10 no no 2;3 1.3445E-67 188.96 6 1 0.76478 1.054 13.182 7 Median 0.76583 1.055 4.0765 6 0 Median 0.56661 0.74654 NaN 1 0 Median 380370000 212640000 167740000 377910000 211010000 166900000 2465600 1627700 837890 13820 1730;1443 14187 50233;50234;50235;50236;50237;50238;50239 75760;75761;75762;75763;75764;75765;75766;75767;75768;75769;75770;75771 75765 12 YSCFALFVK VSPKSLKHSPEDPEKYSCFALFVKFGKEVA PEDPEKYSCFALFVKFGKEVAVKMKQYKDE K Y S V K F 1 0 0 0 1 0 0 0 0 0 1 1 0 2 0 1 0 0 1 1 0 0 9 0 1133.558 P78527;B4DL41 P78527 701 709 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.013064 58.815 2 0.41227 0.52052 3.9662 2 Median 0.41227 0.52052 3.9662 2 0 Median NaN NaN NaN 0 0 Median 14273000 9492700 4780200 14273000 9492700 4780200 0 0 0 13821 1427 14188 50240;50241 75772;75773;75774 75773 3 YSDLLSQSLNQPLTSSK ALDLHLDFIVGQTEKYSDLLSQSLNQPLTS DLLSQSLNQPLTSSKAGSSPCLGSSSAASS K Y S S K A 0 0 1 1 0 2 0 0 0 0 4 1 0 0 1 5 1 0 1 0 0 0 17 0 1879.9527 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2;G1UI29;Q6P4A2 A0A0A0MS59 46 62 SRCAP Helicase SRCAP yes no 2 1.0972E-05 115.57 4 0.61507 0.78511 NaN 1 Median 0.61507 0.78511 NaN 1 0 Median NaN NaN NaN 0 0 Median 4865300 4370500 494810 4865300 4370500 494810 0 0 0 13822 394 14189 50242;50243;50244;50245 75775;75776;75777;75778;75779;75780 75775 6 YSDLQNLAK ______________________________ ELDSLKYSDLQNLAKSLGLRANLRATKLLK K Y S A K S 1 0 1 1 0 1 0 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 9 0 1050.5346 Q9BXS6;A8K4B4;H0YKA7 Q9BXS6 14 22 NUSAP1 Nucleolar and spindle-associated protein 1 yes no 2 0.0027896 81.191 1 2 0.3499 0.52129 17.271 3 Median 0.5574 0.69332 NaN 1 0 Median 0.34179 0.51451 1.8519 2 0 Median 31555000 21891000 9664600 8007000 4626700 3380300 23548000 17264000 6284300 13823 1723 14190 50246;50247;50248 75781;75782;75783 75781 3 YSDLTTLVAFPSSSVYPTK SVHYCPATKKTIERRYSDLTTLVAFPSSSV TTLVAFPSSSVYPTKDEENNPLETEYGLSV R Y S T K D 1 0 0 1 0 0 0 0 0 0 2 1 0 1 2 4 3 0 2 2 0 0 19 0 2075.0463 Q8NHX6;Q53HJ4;B2R7C5;A0A0S2Z4T1;A0A0S2Z492;P25205;B4DUQ9;J3KQ69;B4DS46 Q8NHX6 159 177 HCC5;MCM3 DNA helicase;DNA replication licensing factor MCM3 yes no 2 1.9657E-10 82.543 2 0.35383 0.44927 2.97 2 Median 0.35383 0.44927 2.97 2 0 Median NaN NaN NaN 0 0 Median 13596000 9045500 4550000 13596000 9045500 4550000 0 0 0 13824 463 14191 50249;50250 75784;75785;75786;75787 75784 4 YSDMIVAAIQAEK PKRAKASKKSTDHPKYSDMIVAAIQAEKNR PKYSDMIVAAIQAEKNRAGSSRQSIQKYIK K Y S E K N 3 0 0 1 0 1 1 0 0 2 0 1 1 0 0 1 0 0 1 1 0 0 13 0 1437.7174 P07305 P07305 28 40 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes yes 2 2.7916E-05 85.813 3 3 0.38304 0.53946 21.062 2 Median 0.36614 0.46481 NaN 1 0 Median 0.40074 0.6261 NaN 1 0 Median 75150000 34759000 40392000 12003000 10204000 1798500 63147000 24554000 38593000 13825 1240 14192;14193 50251;50252;50253;50254;50255;50256 75788;75789;75790;75791;75792;75793;75794 75788 481 7 YSDPPVNFLPVPSR EESEIVKLLTNTHHKYSDPPVNFLPVPSRT KYSDPPVNFLPVPSRTRINNPACHKTVIPN K Y S S R T 0 1 1 1 0 0 0 0 0 0 1 0 0 1 4 2 0 0 1 2 0 0 14 0 1586.8093 Q6P158;B4DKW2;A0A087WZ11 Q6P158 432 445 DHX57 Putative ATP-dependent RNA helicase DHX57 yes no 2 0.018858 32.498 1 0.68955 0.93814 NaN 1 Median 0.68955 0.93814 NaN 1 0 Median NaN NaN NaN 0 0 Median 5266900 3025900 2241000 5266900 3025900 2241000 0 0 0 13826 1589 14194 50257 75795 75795 1 YSEAITQSVLK APILQNIGQLGLLARYSEAITQSVLKELQN LLARYSEAITQSVLKELQNRRAGPATSPPK R Y S L K E 1 0 0 0 0 1 1 0 0 1 1 1 0 0 0 2 1 0 1 1 0 0 11 0 1237.6554 O60287 O60287 1075 1085 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.00060567 78.655 1 0.90948 1.1532 NaN 1 Median 0.90948 1.1532 NaN 1 0 Median NaN NaN NaN 0 0 Median 5971000 3614800 2356300 5971000 3614800 2356300 0 0 0 13827 1190 14195 50258 75796;75797 75797 2 YSESAGGFYYVESGK VCSIGTANAVAGAVKYSESAGGFYYVESGK YSESAGGFYYVESGKLFSVTRNRFIHWKTS K Y S G K L 1 0 0 0 0 0 2 3 0 0 0 1 0 1 0 3 0 0 3 1 0 0 15 0 1642.7151 G3V198;Q12769;E9PR16;E9PSI3 G3V198 44 58 NUP160 Nuclear pore complex protein Nup160 yes no 2 3.7986E-06 131.17 4 0.44454 0.58544 NaN 1 Median 0.44454 0.58544 NaN 1 0 Median NaN NaN NaN 0 0 Median 5202300 4474700 727590 5202300 4474700 727590 0 0 0 13828 1077 14196 50259;50260;50261;50262 75798;75799;75800;75801 75799 4 YSETATAIAYEQHGFFEQAQESYEK QEEDMWAGLWQKRCKYSETATAIAYEQHGF EQHGFFEQAQESYEKAMDKAKKEHERSNAS K Y S E K A 4 0 0 0 0 3 5 1 1 1 0 1 0 2 0 2 2 0 3 0 0 0 25 0 2926.2933 Q59FH1;H0Y4W2;F2Z2U4;Q9Y4A5 Q59FH1 2492 2516 TRRAP Transformation/transcription domain-associated protein yes no 3 9.8189E-05 60.939 1 0.4689 0.5758 NaN 1 Median 0.4689 0.5758 NaN 1 0 Median NaN NaN NaN 0 0 Median 1392200 900120 492120 1392200 900120 492120 0 0 0 13829 1050 14197 50263 75802;75803 75802 2 YSEVDDSLPSGGEK SNQIQTQRTARAKRKYSEVDDSLPSGGEKP KYSEVDDSLPSGGEKPSKNETGLLSSIKKF K Y S E K P 0 0 0 2 0 0 2 2 0 0 1 1 0 0 1 3 0 0 1 1 0 0 14 0 1481.6522 A0A024R5Q8;Q05D32;H0YNU2;H0YNW9;H0YMH7 A0A024R5Q8 27 40 CTDSPL2 CTD small phosphatase-like protein 2 yes no 2 6.8013E-07 127.87 4 2 0.69867 0.87253 43.124 5 Median 0.7642 0.95327 28.145 3 0 Median 0.35891 0.53715 12.005 2 0 Median 38581000 25913000 12668000 19470000 11982000 7488100 19111000 13931000 5180300 13830 149 14198 50264;50265;50266;50267;50268;50269 75804;75805;75806;75807;75808;75809;75810 75809 7 YSEVDDSLPSGGEKPSK SNQIQTQRTARAKRKYSEVDDSLPSGGEKP EVDDSLPSGGEKPSKNETGLLSSIKKFIKG K Y S S K N 0 0 0 2 0 0 2 2 0 0 1 2 0 0 2 4 0 0 1 1 0 0 17 1 1793.8319 A0A024R5Q8;Q05D32;H0YNU2;H0YNW9;H0YMH7 A0A024R5Q8 27 43 CTDSPL2 CTD small phosphatase-like protein 2 yes no 3 0.040516 16.849 1 0.37204 0.58007 NaN 1 Median NaN NaN NaN 0 0 Median 0.37204 0.58007 NaN 1 0 Median 7258500 5678600 1579900 0 0 0 7258500 5678600 1579900 13831 149 14199 50270 75811 75811 1 YSEVFEAINITNNEK NQDDYQLVRKLGRGKYSEVFEAINITNNEK YSEVFEAINITNNEKVVVKILKPVKKKKIK K Y S E K V 1 0 3 0 0 0 3 0 0 2 0 1 0 1 0 1 1 0 1 1 0 0 15 0 1769.8472 E7EU96;B5BUH5;B2R6D7;Q5U5J2;P68400;Q2I0Y7;Q8NEV1;V9GYA2;V9GY80 E7EU96 50 64 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 2 1.0673E-05 117.95 5 0.85759 1.0763 5.3956 2 Median 0.85759 1.0763 5.3956 2 0 Median NaN NaN NaN 0 0 Median 12948000 6866000 6082200 12948000 6866000 6082200 0 0 0 13832 697 14200 50271;50272;50273;50274;50275 75812;75813;75814;75815;75816;75817;75818;75819;75820 75812 9 YSEVFEAINITNNER NQDDYQLVRKLGRGKYSEVFEAINITNNER YSEVFEAINITNNERVVVKILKPVKKKKIK K Y S E R V 1 1 3 0 0 0 3 0 0 2 0 0 0 1 0 1 1 0 1 1 0 0 15 0 1797.8533 P19784;H3BNI9 P19784 51 65 CSNK2A2 Casein kinase II subunit alpha yes no 2 9.3421E-15 119.76 5 0.58758 0.81684 2.4426 2 Median 0.58758 0.81684 2.4426 2 0 Median NaN NaN NaN 0 0 Median 9869200 5898100 3971100 9869200 5898100 3971100 0 0 0 13833 1284 14201 50276;50277;50278;50279;50280 75821;75822;75823;75824;75825;75826;75827 75824 7 YSFLQFDPAPR CGNQAAIMELDDTLKYSFLQFDPAPRRGEP DTLKYSFLQFDPAPRRGEPHVTRRTPDYFL K Y S P R R 1 1 0 1 0 1 0 0 0 0 1 0 0 2 2 1 0 0 1 0 0 0 11 0 1339.6561 B3KQ51;Q8WZ56;Q6I9T8;Q5U0I7;B3KUN1;B3KRM2;A0A140VJS0;P67775;P62714;H0YBN9 B3KQ51 219 229 PPP2CA;PPP2CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 2 0.0015164 109.66 4 2 0.39362 0.53735 71.145 5 Median 0.36757 0.4979 42.186 3 0 Median 0.90702 1.3066 16.783 2 0 Median 38500000 23031000 15470000 21250000 14994000 6256300 17250000 8036900 9213300 13834 502 14202 50281;50282;50283;50284;50285;50286 75828;75829;75830;75831;75832;75833;75834 75829 7 YSGAYGASVSDEELK DRMKESSPSGSKSQRYSGAYGASVSDEELK YSGAYGASVSDEELKRRVAEELALEQAKKE R Y S L K R 2 0 0 1 0 0 2 2 0 0 1 1 0 0 0 3 0 0 2 1 0 0 15 0 1574.71 A4D1N4;C9JRZ6;Q9NX63;B7Z1X9;F8WAR4 A4D1N4 49 63 CHCHD3 MICOS complex subunit MIC19 yes no 2 4.8161E-07 126.34 3 2 0.46921 0.5843 80.95 5 Median 0.42881 0.54365 6.1005 3 0 Median 1.5884 2.396 2.8601 2 0 Median 77759000 44386000 33373000 43658000 30480000 13178000 34101000 13907000 20194000 13835 549 14203 50287;50288;50289;50290;50291 75835;75836;75837;75838;75839;75840;75841 75835 7 YSGELSGIR RRRGQVREVRKEEQRYSGELSGIRAGVKKS RKEEQRYSGELSGIRAGVKKSIKLK_____ R Y S I R A 0 1 0 0 0 0 1 2 0 1 1 0 0 0 0 2 0 0 1 0 0 0 9 0 980.49271 Q9NQZ2 Q9NQZ2 461 469 UTP3 Something about silencing protein 10 yes yes 2 0.031287 68.224 2 1 1.0494 1.4179 18.467 2 Median 1.0494 1.4179 18.467 2 0 Median NaN NaN NaN 0 0 Median 58796000 32452000 26343000 49696000 23353000 26343000 9099800 9099800 0 13836 1755 14204 50292;50293;50294 75842;75843;75844 75844 3 YSGLCPHVVVLVATVR GADIGMEKFFNIKCRYSGLCPHVVVLVATV SGLCPHVVVLVATVRALKMHGGGPTVTAGL R Y S V R A 1 1 0 0 1 0 0 1 1 0 2 0 0 0 1 1 1 0 1 5 0 0 16 0 1768.9658 A0A024R652;F5H2F4;B7Z809;P11586 A0A024R652 687 702 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 3 0.024273 45.452 1 0.86393 1.1814 NaN 1 Median 0.86393 1.1814 NaN 1 0 Median NaN NaN NaN 0 0 Median 6123400 3998900 2124500 6123400 3998900 2124500 0 0 0 13837 154 14205 50295 75845 75845 1 YSGPEDDAAISLAFSK KEYFADMKRHRIQFKYSGPEDDAAISLAFS SGPEDDAAISLAFSKKQIDDRKEWLTNFME K Y S S K K 3 0 0 2 0 0 1 1 0 1 1 1 0 1 1 3 0 0 1 0 0 0 16 0 1669.7835 P11388 P11388 640 655 TOP2A DNA topoisomerase 2-alpha yes yes 2 6.1253E-25 171.99 4 3 0.90541 1.2092 14.592 7 Median 0.90802 1.1861 1.8666 4 0 Median 0.79933 1.2773 19.686 3 0 Median 3143200000 1669900000 1473300000 1999300000 1056700000 942560000 1143900000 613180000 530760000 13838 1256 14206 50296;50297;50298;50299;50300;50301;50302 75846;75847;75848;75849;75850;75851;75852;75853;75854;75855;75856;75857;75858;75859;75860;75861;75862;75863;75864 75846 19 YSGPEDDAAISLAFSKK KEYFADMKRHRIQFKYSGPEDDAAISLAFS GPEDDAAISLAFSKKQIDDRKEWLTNFMED K Y S K K Q 3 0 0 2 0 0 1 1 0 1 1 2 0 1 1 3 0 0 1 0 0 0 17 1 1797.8785 P11388 P11388 640 656 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 0.00093841 71.601 4 1 1.1311 1.4046 22.616 4 Median 1.1311 1.4046 22.616 4 0 Median NaN NaN NaN 0 0 Median 42921000 23062000 19858000 38301000 18443000 19858000 4619200 4619200 0 13839 1256 14207 50303;50304;50305;50306;50307 75865;75866;75867;75868;75869 75865 5 YSGSYNDYLR LDYRRLPDAHSDYARYSGSYNDYLRAAQMH SDYARYSGSYNDYLRAAQMHSGYQRRM___ R Y S L R A 0 1 1 1 0 0 0 1 0 0 1 0 0 0 0 2 0 0 3 0 0 0 10 0 1236.5411 A0A0S2Z4Z0;Q96PK6;B4DNG4 A0A0S2Z4Z0 648 657 RBM14 RNA-binding protein 14 yes no 2 0.00013091 130.75 3 2 0.46553 0.61982 48.257 5 Median 0.38789 0.51895 11.027 3 0 Median 0.92012 1.3013 5.095 2 0 Median 40954000 24190000 16764000 18348000 12362000 5985600 22606000 11827000 10779000 13840 472 14208 50308;50309;50310;50311;50312 75870;75871;75872;75873;75874;75875;75876;75877 75870 8 YSGTLNLDR ENQTPEFFQDVCKPKYSGTLNLDRVTREAC DVCKPKYSGTLNLDRVTREACPELDYFVVF K Y S D R V 0 1 1 1 0 0 0 1 0 0 2 0 0 0 0 1 1 0 1 0 0 0 9 0 1037.5142 A0A0U1RQF0;P49327 A0A0U1RQF0 1994 2002 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.017243 57.859 1 1 0.81244 1.0748 NaN 1 Median 0.81244 1.0748 NaN 1 0 Median NaN NaN NaN 0 0 Median 14383000 6279100 8103500 11022000 6279100 4742700 3360800 0 3360800 13841 486 14209 50313;50314 75878;75879 75879 2 YSHEVLSEENFK LGRCNYSQSERNLCKYSHEVLSEENFKVLK LCKYSHEVLSEENFKVLKNHELSGLNKEEL K Y S F K V 0 0 1 0 0 0 3 0 1 0 1 1 0 1 0 2 0 0 1 1 0 0 12 0 1480.6834 Q7Z2W4;A8K9U6;C9J6P4 Q7Z2W4 108 119 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 3 0.032861 37.364 1 0.59422 0.77336 NaN 1 Median 0.59422 0.77336 NaN 1 0 Median NaN NaN NaN 0 0 Median 4834700 3054600 1780100 4834700 3054600 1780100 0 0 0 13842 1613 14210 50315 75880 75880 1 YSLDPENPTK ______________________________ ______________________________ R Y S T K S 0 0 1 1 0 0 1 0 0 0 1 1 0 0 2 1 1 0 1 0 0 0 10 0 1162.5506 A0A087WXM6;J3QQT2;J3KRX5;A0A024R261;A0A0A6YYL6;P18621;J3KRB3;A0A087WWH0;J3QS96;A0A087WY81;J3KSJ0 A0A087WXM6 4 13 RPL17;hCG_24487;RPL17-C18orf32 60S ribosomal protein L17 yes no 2 3.9438E-18 213.85 5 2 0.78989 1.0319 43.494 6 Median 0.80339 1.0649 4.034 4 0 Median 0.2886 0.45673 2.801 2 0 Median 3244400000 1847000000 1397400000 3035100000 1684700000 1350400000 209230000 162290000 46938000 13843 81 14211 50316;50317;50318;50319;50320;50321;50322 75881;75882;75883;75884;75885;75886;75887;75888;75889;75890;75891;75892;75893;75894;75895;75896;75897 75883 17 YSLIPDEEEEKEEAK GHFAKDCFMQPGGTKYSLIPDEEEEKEEAK YSLIPDEEEEKEEAKSAEFEKPDPTRNPSR K Y S A K S 1 0 0 1 0 0 6 0 0 1 1 2 0 0 1 1 0 0 1 0 0 0 15 1 1807.8364 A0A087WYV3;B4DYA9;A0A0D9SEW3;A0A087WXF8;Q9NP64 A0A087WYV3 93 107 ZCCHC17 Nucleolar protein of 40 kDa yes no 3 0.00083339 83.877 1 0.83639 1.0439 NaN 1 Median 0.83639 1.0439 NaN 1 0 Median NaN NaN NaN 0 0 Median 3058500 1756200 1302300 3058500 1756200 1302300 0 0 0 13844 357 14212 50323 75898 75898 1 YSLQSANASSLSSGQLK SYGLGSEQRSQAPARYSLQSANASSLSSGQ LQSANASSLSSGQLKSPSLSQSQASRVLGQ R Y S L K S 2 0 1 0 0 2 0 1 0 0 3 1 0 0 0 6 0 0 1 0 0 0 17 0 1739.869 Q6DHZ8;B2RBM8;Q9H2P0 Q6DHZ8 392 408 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 2.6033E-54 201.08 4 2 0.80495 0.99469 29.8 6 Median 0.7696 0.94311 5.2765 4 0 Median 1.0714 1.7073 5.7056 2 0 Median 156460000 87424000 69037000 80153000 45965000 34189000 76309000 41460000 34849000 13845 729 14213 50324;50325;50326;50327;50328;50329 75899;75900;75901;75902;75903;75904;75905;75906;75907;75908;75909;75910 75905 12 YSNDLYELQASR GTRLLVFGGMVEYGKYSNDLYELQASRWEW YGKYSNDLYELQASRWEWKRLKAKTPKNGP K Y S S R W 1 1 1 1 0 1 1 0 0 0 2 0 0 0 0 2 0 0 2 0 0 0 12 0 1457.6787 A6NEM2;P51610;Q05C05 A6NEM2 106 117 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 2 1.8881E-05 112.83 4 0.71903 0.96958 15.662 4 Median 0.71903 0.96958 15.662 4 0 Median NaN NaN NaN 0 0 Median 23122000 12838000 10285000 23122000 12838000 10285000 0 0 0 13846 564 14214 50330;50331;50332;50333 75911;75912;75913;75914;75915;75916 75914 6 YSNENLDLAR TRNYLDWLTSIPWGKYSNENLDLARAQAVL IPWGKYSNENLDLARAQAVLEEDHYGMEDV K Y S A R A 1 1 2 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 10 0 1193.5677 K7EJE8;K7EKE6;B3KU28;Q2VPA0;B3KXS5;E5KMI6;P36776;B4DPX0;K7ER27;A4VCH6 K7EJE8 343 352 LONP1 Lon protease homolog, mitochondrial;Lon protease homolog yes no 2 1.6522E-09 110.87 3 0.37564 0.52438 NaN 1 Median 0.37564 0.52438 NaN 1 0 Median NaN NaN NaN 0 0 Median 9482000 8615700 866350 9482000 8615700 866350 0 0 0 13847 780 14215 50334;50335;50336 75917;75918;75919 75918 3 YSNSDVIIYVGCGER AFGCGKTVISQSLSKYSNSDVIIYVGCGER YSNSDVIIYVGCGERGNEMSEVLRDFPELT K Y S E R G 0 1 1 1 1 0 1 2 0 2 0 0 0 0 0 2 0 0 2 2 0 0 15 0 1730.7934 P38606 P38606 266 280 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 2 0.0052068 48.659 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2029000 2029000 0 2029000 2029000 0 0 0 0 13848 1329 14216 50337 75920 75920 1 YSPTSPTYSPTSPK TYSPTSPVYTPTSPKYSPTSPTYSPTSPKY KYSPTSPTYSPTSPKYSPTSPTYSPTSPKG K Y S P K Y 0 0 0 0 0 0 0 0 0 0 0 1 0 0 4 4 3 0 2 0 0 0 14 0 1511.7144 P24928;B4DET1 P24928 1909 1922 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2 0.0030128 98.182 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13849 1295 14217 50338;50339 75921;75922 75922 2 YSPTTSHVGA LLLSGGADNKLYSYRYSPTTSHVGA_____ LYSYRYSPTTSHVGA_______________ R Y S G A - 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 2 2 0 1 1 0 0 10 0 1018.472 Q53T99;Q9GZL7;B4DRY7 Q53T99 414 423 WDR12 Ribosome biogenesis protein WDR12 yes no 2 0.0039182 85.265 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 115620000 0 0 85424000 0 0 30195000 0 0 13850 1543 14218 50340;50341;50342;50343 75923;75924;75925;75926 75925 4 YSQLVVETIR SKKRKNSKKKNQPGKYSQLVVETIRRLGER NQPGKYSQLVVETIRRLGERNGSSLAKIYT K Y S I R R 0 1 0 0 0 1 1 0 0 1 1 0 0 0 0 1 1 0 1 2 0 0 10 0 1206.6608 Q92522 Q92522 48 57 H1FX Histone H1x yes yes 2 5.529E-25 209.21 3 0.69364 0.94415 2.732 3 Median 0.69364 0.94415 2.732 3 0 Median NaN NaN NaN 0 0 Median 422740000 248600000 174150000 422740000 248600000 174150000 0 0 0 13851 1671 14219 50344;50345;50346 75927;75928;75929;75930;75931;75932 75927 6 YSQLVVETIRR SKKRKNSKKKNQPGKYSQLVVETIRRLGER QPGKYSQLVVETIRRLGERNGSSLAKIYTE K Y S R R L 0 2 0 0 0 1 1 0 0 1 1 0 0 0 0 1 1 0 1 2 0 0 11 1 1362.7619 Q92522 Q92522 48 58 H1FX Histone H1x yes yes 2;3 4.7684E-07 114.89 5 4 0.6396 0.89952 9.9773 9 Median 0.70557 0.95428 8.258 5 0 Median 0.54189 0.84061 5.6011 4 0 Median 559770000 344430000 215350000 413200000 251350000 161860000 146570000 93083000 53487000 13852 1671 14220 50347;50348;50349;50350;50351;50352;50353;50354;50355 75933;75934;75935;75936;75937;75938;75939;75940;75941;75942;75943;75944;75945;75946 75946 14 YSQVLANGLDNK PDWFLNRQKDVKDGKYSQVLANGLDNKLRE DGKYSQVLANGLDNKLREDLERLKKIRAHR K Y S N K L 1 0 2 1 0 1 0 1 0 0 2 1 0 0 0 1 0 0 1 1 0 0 12 0 1320.6674 P62269;J3JS69 P62269 95 106 RPS18 40S ribosomal protein S18 yes no 2 1.2829E-21 178.54 3 2 0.88005 1.3147 15.817 5 Median 0.8514 1.0587 20.118 3 0 Median 0.88143 1.3266 1.2733 2 0 Median 162480000 83876000 78601000 136740000 70231000 66508000 25738000 13645000 12093000 13853 1402 14221 50356;50357;50358;50359;50360 75947;75948;75949;75950;75951;75952;75953;75954;75955;75956 75952 10 YSQVLGLGGR RDSTHLICAFANTPKYSQVLGLGGRIVRKE ANTPKYSQVLGLGGRIVRKEWVLDCHRMRR K Y S G R I 0 1 0 0 0 1 0 3 0 0 2 0 0 0 0 1 0 0 1 1 0 0 10 0 1048.5665 A0A024R0S8;Q59HH7;P18887;F5H8D7;B4DTD3;V9VB20;M4WFF9 A0A024R0S8 370 379 XRCC1 DNA repair protein XRCC1 yes no 2 4.014E-05 117.89 3 0.40481 0.53743 84.277 2 Median 0.40481 0.53743 84.277 2 0 Median NaN NaN NaN 0 0 Median 38637000 28811000 9826700 38637000 28811000 9826700 0 0 0 13854 42 14222 50361;50362;50363 75957;75958;75959;75960 75960 4 YSQYQQAIYK LESQTYEVFEKDPIKYSQYQQAIYKCLLDR KDPIKYSQYQQAIYKCLLDRVPEEEKDTNV K Y S Y K C 1 0 0 0 0 3 0 0 0 1 0 1 0 0 0 1 0 0 3 0 0 0 10 0 1290.6245 B4DV00;B2RDD7;O14744;H0YJX6;G3V5T6;H0YJ77 B4DV00 228 237 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 2 0.0056331 73.248 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2417800 2417800 0 2417800 2417800 0 0 0 0 13855 734 14223 50364 75961 75961 1 YSSNRPPIASLSQTEVVR TFSAPSRANENVALKYSSNRPPIASLSQTE NRPPIASLSQTEVVRSGHLTTKPTQSKLDI K Y S V R S 1 2 1 0 0 1 1 0 0 1 1 0 0 0 2 4 1 0 1 2 0 0 18 1 2003.0436 Q15058 Q15058 214 231 KIF14 Kinesin-like protein KIF14 yes yes 3 2.0075E-06 114.52 3 0.90669 1.2053 NaN 1 Median 0.90669 1.2053 NaN 1 0 Median NaN NaN NaN 0 0 Median 23688000 15965000 7722800 23688000 15965000 7722800 0 0 0 13856 1504 14224 50365;50366;50367 75962;75963;75964;75965 75965 4 YSSSFCTHDR AQYKCLVIKYAKDTRYSSSFCTHDRNTMEA AKDTRYSSSFCTHDRNTMEALPACLLRDVA R Y S D R N 0 1 0 1 1 0 0 0 1 0 0 0 0 1 0 3 1 0 1 0 0 0 10 0 1258.5037 B5BUF9;B5BU32;A0A024R8N6;P04183;K7ERV3;K7ES52;K7ERJ1;K7ENW5 B5BUF9 61 70 TK1 Thymidine kinase;Thymidine kinase, cytosolic yes no 2 0.026475 80.231 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1560000 1560000 0 1560000 1560000 0 0 0 0 13857 200 14225 50368 75966 75966 1 YSTPTYTGGQSESHVQSASEDTVTER RTDAPLMQFKSILLKYSTPTYTGGQSESHV ESHVQSASEDTVTERVEMSVNDKAEASGCR K Y S E R V 1 1 0 1 0 2 3 2 1 0 0 0 0 0 1 5 5 0 2 2 0 0 26 0 2816.2373 B4DXX1;B2R713;Q7Z2T5 B4DXX1 535 560 TRMT1L TRMT1-like protein yes no 3 0.00010177 61.903 1 1 0.65252 0.87578 41.22 2 Median 0.46686 0.65435 NaN 1 0 Median 0.91201 1.1721 NaN 1 0 Median 5236100 2655400 2580700 2041700 1384800 656950 3194300 1270600 1923700 13858 702 14226 50369;50370 75967;75968 75967 2 YSTSGSSGLTTGK LCGKFVLRPLRPCRRYSTSGSSGLTTGKIA RRYSTSGSSGLTTGKIAGAGLLFVGGGIGG R Y S G K I 0 0 0 0 0 0 0 3 0 0 1 1 0 0 0 4 3 0 1 0 0 0 13 0 1244.5885 Q16891;B9A067;B4DQY2;B4DKR1;B4DT20;Q05DN3;B4E2B5;Q3B7X4;A0A087WYS0;D6RAW4 Q16891 33 45 IMMT MICOS complex subunit MIC60 yes no 2 7.0857E-06 90.05 1 0.47952 0.61084 NaN 1 Median 0.47952 0.61084 NaN 1 0 Median NaN NaN NaN 0 0 Median 6572600 4271800 2300800 6572600 4271800 2300800 0 0 0 13859 1524 14227 50371 75969 75969 1 YSVADIER KQENTRLQNIIDNQKYSVADIERINHERNE NIIDNQKYSVADIERINHERNELQQTINKL K Y S E R I 1 1 0 1 0 0 1 0 0 1 0 0 0 0 0 1 0 0 1 1 0 0 8 0 951.46616 A8K031;O14777;Q05DQ6 A8K031 361 368 KNTC2;NDC80 Kinetochore protein NDC80 homolog yes no 2 0.0029013 83.265 1 2 0.51489 0.72612 6.3646 2 Median NaN NaN NaN 0 0 Median 0.51489 0.72612 6.3646 2 0 Median 25199000 18430000 6769500 5002800 5002800 0 20196000 13427000 6769500 13860 574 14228 50372;50373;50374 75970;75971;75972;75973 75970 4 YSVDIPLDK SFVKVYNYNHLMPTRYSVDIPLDKTVVNKD HLMPTRYSVDIPLDKTVVNKDVFRDPALKR R Y S D K T 0 0 0 2 0 0 0 0 0 1 1 1 0 0 1 1 0 0 1 1 0 0 9 0 1048.5441 E4W6B6;B2R4D8;A0A024R1V4;P61353;K7ELC7;K7EQQ9 E4W6B6 85 93 RPL27 60S ribosomal protein L27 yes no 2 0.0015065 124.08 5 2 0.66443 1.0992 12.465 4 Linear 0.81054 1.0737 2.5686 2 0 Median 0.54916 0.8667 0.98374 2 0 Median 1903900000 1003600000 900310000 1488500000 744410000 744090000 415400000 259180000 156210000 13861 72 14229 50375;50376;50377;50378;50379;50380;50381 75974;75975;75976;75977;75978;75979;75980;75981;75982;75983;75984;75985;75986 75981 13 YSVLNNDDYFADVSPLR EKKKKKKVVKEPETRYSVLNNDDYFADVSP VLNNDDYFADVSPLRATSPSKSVAHGQAPE R Y S L R A 1 1 2 3 0 0 0 0 0 0 2 0 0 1 1 2 0 0 2 2 0 0 17 0 1986.9323 Q1ED39;H3BMC9 Q1ED39 29 45 KNOP1 Lysine-rich nucleolar protein 1 yes no 2 0.00032791 93.348 1 1.7003 2.4165 NaN 1 Median 1.7003 2.4165 NaN 1 0 Median NaN NaN NaN 0 0 Median 1654800 621570 1033200 1654800 621570 1033200 0 0 0 13862 1525 14230 50382 75987 75987 1 YSVQLLTPANLLAK ALNHLGEIGTKTTLRYSVQLLTPANLLAKI RYSVQLLTPANLLAKINGKDSIEKEHVEEI R Y S A K I 2 0 1 0 0 1 0 0 0 0 4 1 0 0 1 1 1 0 1 1 0 0 14 0 1529.8817 B5BUB1;Q9Y265;H7C4G5 B5BUB1 405 418 RUVBL1 RuvB-like 1 yes no 2 1.0342E-33 204.56 4 2 0.61787 0.79415 40.191 6 Median 0.59648 0.76318 6.5137 4 0 Median 1.0264 1.6343 9.6439 2 0 Median 332380000 192500000 139870000 188790000 117440000 71352000 143590000 75067000 68519000 13863 896 14231 50383;50384;50385;50386;50387;50388 75988;75989;75990;75991;75992;75993;75994;75995;75996;75997 75991 10 YSYLQQDLPDNPER AYPSLILSDNLRQVRYSYLQQDLPDNPERF RYSYLQQDLPDNPERFNLFPCVLGSPCFIA R Y S E R F 0 1 1 2 0 2 1 0 0 0 2 0 0 0 2 1 0 0 2 0 0 0 14 0 1736.8006 P14373;A0A140T9B9;A0A140T9N6;A0A140T9V9;H0Y551;A0A140T9Q6 P14373 340 353 TRIM27 Zinc finger protein RFP yes no 2 3.2129E-10 151.26 4 1 0.88635 1.2743 11.441 3 Median 0.88635 1.2743 11.441 3 0 Median NaN NaN NaN 0 0 Median 14375000 4967400 9407300 12321000 4967400 7353100 2054200 0 2054200 13864 1266 14232 50389;50390;50391;50392;50393 75998;75999;76000;76001;76002;76003;76004;76005 75999 8 YTCGEAPDYDR RLLLEFTDTSYEEKRYTCGEAPDYDRSQWL EEKRYTCGEAPDYDRSQWLDVKFKLDLDFP R Y T D R S 1 1 0 2 1 0 1 1 0 0 0 0 0 0 1 0 1 0 2 0 0 0 11 0 1345.5245 Q6FGJ9;Q59EJ5;P21266;A4UJ43;A0A0A0MTN3 Q6FGJ9 37 47 GSTM3 Glutathione S-transferase Mu 3 yes no 2 0.0022857 97.597 3 0.30359 0.40404 24.522 3 Median 0.30359 0.40404 24.522 3 0 Median NaN NaN NaN 0 0 Median 8830700 7030900 1799800 8830700 7030900 1799800 0 0 0 13865 1286 14233 50394;50395;50396 76006;76007;76008;76009 76007 4 YTCSFCGK ______________________________ EISQHAKYTCSFCGKTKMKRRAVGIWHCGS K Y T G K T 0 0 0 0 2 0 0 1 0 0 0 1 0 1 0 1 1 0 1 0 0 0 8 0 1021.3997 C9J4Z3;P61513;G5E9R3;M0R0A1;Q6P4E4;E9PEL3;M0R2L6;A6NKH3 C9J4Z3 13 20 RPL37A;RPL37AP8 60S ribosomal protein L37a;Putative 60S ribosomal protein L37a-like protein yes no 2 0.0055162 89.55 2 1 0.80433 1.0563 47.364 3 Plateau 0.79497 1.0163 5.4537 2 0 Median 0.29508 0.44868 NaN 1 0 Median 251690000 147620000 104070000 232190000 132360000 99824000 19505000 15261000 4243300 13866 935 14234 50397;50398;50399 76010;76011;76012;76013;76014 76011 5 YTEGVQSLNWTK SLDPIKEWLNSCDLKYTEGVQSLNWTKIMK DLKYTEGVQSLNWTKIMKTIVDDPEGFFEQ K Y T T K I 0 0 1 0 0 1 1 1 0 0 1 1 0 0 0 1 2 1 1 1 0 0 12 0 1424.6936 Q9Y5B9 Q9Y5B9 893 904 SUPT16H FACT complex subunit SPT16 yes yes 2 7.5489E-06 94.363 2 0.67607 1.0385 3.8872 2 Median NaN NaN NaN 0 0 Median 0.67607 1.0385 3.8872 2 0 Median 47694000 26595000 21099000 0 0 0 47694000 26595000 21099000 13867 1829 14235 50400;50401 76015;76016;76017;76018;76019;76020 76019 6 YTEVFPPTPVRPAFSFYETLR PLTVSAVQGAHPVLRYTEVFPPTPVRPAFS PTPVRPAFSFYETLRERSSLLPRLDKPCPA R Y T L R E 1 2 0 0 0 0 2 0 0 0 1 0 0 3 4 1 3 0 2 2 0 0 21 1 2516.274 Q9H6R4;A0A0A0MRW6;B4DF80;B3KPN5 Q9H6R4 695 715 NOL6 Nucleolar protein 6 yes no 3 1.1427E-07 75.239 5 2 0.91964 1.2805 7.5128 6 Median 0.92802 1.2505 5.7424 4 0 Median 0.89218 1.3829 8.394 2 0 Median 163550000 85221000 78324000 89685000 47039000 42645000 73860000 38182000 35678000 13868 1738 14236 50402;50403;50404;50405;50406;50407;50408 76021;76022;76023;76024;76025;76026;76027;76028;76029;76030;76031;76032;76033;76034 76028 14 YTEVLK LRKQAEKNVEKKIDKYTEVLKTHGLLV___ KNVEKKIDKYTEVLKTHGLLV_________ K Y T L K T 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 1 0 1 1 0 0 6 0 751.41161 Q53H34;P40429;Q5QTS3;M0QYS1;Q8J015;Q0VGL3;Q9BSQ6 Q53H34 192 197 RPL13A;RPL13a 60S ribosomal protein L13a no no 2 0.034697 87.582 1 0.72599 0.93889 NaN 1 Median 0.72599 0.93889 NaN 1 0 Median NaN NaN NaN 0 0 Median 88958000 49325000 39633000 88958000 49325000 39633000 0 0 0 13869 1332;1712 14237 50409 76035;76036 76035 2 YTIENPR MWSEGNGSHTIRDLKYTIENPRHFVDSHHQ SHTIRDLKYTIENPRHFVDSHHQKPVNAII K Y T P R H 0 1 1 0 0 0 1 0 0 1 0 0 0 0 1 0 1 0 1 0 0 0 7 0 891.44503 A0A140VK49;Q7KZF4;B2R5U1;Q59FF0;B4E299;B3KU67;I6TRR8 A0A140VK49 178 184 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.004945 114.02 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9284400 9284400 0 9284400 9284400 0 0 0 0 13870 508 14238 50410 76037 76037 1 YTIIPLNK VTGKKLLERGELKRRYTIIPLNKISARCIA RGELKRRYTIIPLNKISARCIAPETLRVAQ R Y T N K I 0 0 1 0 0 0 0 0 0 2 1 1 0 0 1 0 1 0 1 0 0 0 8 0 960.56442 A0A024R158;O95347;B7ZLZ7;A8K984;B3KMB1;Q05BV1;Q2KQ72 A0A024R158 573 580 SMC2L1;SMC2 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 2 yes no 2 0.0042555 102.71 4 2 0.68134 0.94321 6.8833 6 Median 0.70192 0.91317 3.7859 4 0 Median 0.64566 1.0298 0.19802 2 0 Median 530050000 318340000 211710000 391680000 235690000 155990000 138370000 82649000 55725000 13871 50 14239 50411;50412;50413;50414;50415;50416 76038;76039;76040;76041;76042;76043;76044;76045;76046;76047 76040 10 YTLDLTGGMFPLR SGQILYEGLEYCEERYTLDLTGGMFPLRGQ ERYTLDLTGGMFPLRGQTSNTKLLGCQSIE R Y T L R G 0 1 0 1 0 0 0 2 0 0 3 0 1 1 1 0 2 0 1 0 0 0 13 0 1482.7541 Q8WYP5;Q96M44 Q8WYP5 331 343 AHCTF1 Protein ELYS yes no 2 0.00025182 82.831 2 2 0.57675 0.87828 52.29 3 Median 0.85511 1.1584 70.411 2 0 Median 0.57675 0.87828 NaN 1 0 Median 34478000 15284000 19194000 3742700 2046000 1696600 30735000 13238000 17497000 13872 1670 14240;14241 50417;50418;50419;50420 76048;76049;76050;76051;76052 76049 751 4 YTLLLGQDENSVIK YFAYVQMFNSRILTKYTLLLGQDENSVIKS KYTLLLGQDENSVIKSFTASVDRKFISLMS K Y T I K S 0 0 1 1 0 1 1 1 0 1 3 1 0 0 0 1 1 0 1 1 0 0 14 0 1591.8457 Q9H8H0;J3QR28 Q9H8H0 192 205 NOL11 Nucleolar protein 11 yes no 2 3.5834E-40 206.36 4 2 0.93252 1.1646 8.8983 6 Median 0.95837 1.1901 3.2373 4 0 Median 0.64544 1.02 6.7203 2 0 Median 182580000 99243000 83339000 117290000 57866000 59429000 65286000 41377000 23909000 13873 1743 14242 50421;50422;50423;50424;50425;50426 76053;76054;76055;76056;76057;76058;76059;76060;76061;76062;76063;76064;76065 76057 13 YTPSQQGVAFNSGAK PVRAADKLAPAQYIRYTPSQQGVAFNSGAK YTPSQQGVAFNSGAKQRVIRMVEMQKDPME R Y T A K Q 2 0 1 0 0 2 0 2 0 0 0 1 0 1 1 2 1 0 1 1 0 0 15 0 1553.7474 G3V4X8;B7Z9X2;B4DY36;A0A024R6E3;Q6I9S2;G3V3A4;B4DEG7;Q13573;Q0D2M5;Q6P151 G3V4X8 17 31 SNW1 SNW domain-containing protein 1 yes no 2 0.0021317 98.337 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1165100 0 1165100 1165100 0 1165100 0 0 0 13874 161 14243 50427;50428;50429 76066;76067;76068 76066 3 YTPVQQGPVGVNVTYGGDPIPK DVDIIDHHDNTYTVKYTPVQQGPVGVNVTY PVGVNVTYGGDPIPKSPFSVAVSPSLDLSK K Y T P K S 0 0 1 1 0 2 0 4 0 1 0 1 0 0 4 0 2 0 2 4 0 0 22 0 2285.1692 P21333;Q5HY54;Q60FE6;Q60FE5;A6NDY9;A0A087WWY3 P21333 937 958 FLNA Filamin-A yes no 2 2.3964E-31 178.85 4 0.88577 1.1089 11.373 4 Median 0.88577 1.1089 11.373 4 0 Median NaN NaN NaN 0 0 Median 104100000 54596000 49508000 104100000 54596000 49508000 0 0 0 13875 1287 14244 50430;50431;50432;50433 76069;76070;76071;76072;76073;76074;76075;76076;76077;76078 76074 10 YTQVGPDHNR LNQYFQKEKIQGEYKYTQVGPDHNRSFIAE QGEYKYTQVGPDHNRSFIAEMTIYIKQLGR K Y T N R S 0 1 1 1 0 1 0 1 1 0 0 0 0 0 1 0 1 0 1 1 0 0 10 0 1185.5527 Q08211;Q58F26;Q6PJK6 Q08211 200 209 DHX9 ATP-dependent RNA helicase A yes no 2 0.038745 40.058 1 0.66039 0.87421 NaN 1 Median 0.66039 0.87421 NaN 1 0 Median NaN NaN NaN 0 0 Median 1646800 708750 938080 1646800 708750 938080 0 0 0 13876 1448 14245 50434 76079 76079 1 YTRPGLPTFSQEVLHK RKVLQDLVPDDRKLKYTRPGLPTFSQEVLH TRPGLPTFSQEVLHKWKTDIKKYHRIQCPN K Y T H K W 0 1 0 0 0 1 1 1 1 0 2 1 0 1 2 1 2 0 1 1 0 0 16 1 1871.9894 B4DES6;B7Z9P6;G3XAG1;Q96ME7;Q658M0;B4E0X7 B4DES6 275 290 ZNF512;DKFZp666L156 Zinc finger protein 512 yes no 3 0.0010995 63.614 2 0.67026 0.88268 NaN 1 Median 0.67026 0.88268 NaN 1 0 Median NaN NaN NaN 0 0 Median 23062000 10665000 12397000 23062000 10665000 12397000 0 0 0 13877 799 14246 50435;50436 76080;76081 76081 2 YTRPTPVQK VEMGEIIMGNIELTRYTRPTPVQKHAIPII NIELTRYTRPTPVQKHAIPIIKEKRDLMAC R Y T Q K H 0 1 0 0 0 1 0 0 0 0 0 1 0 0 2 0 2 0 1 1 0 0 9 1 1088.5978 A0A0D9SFB3;A0A0D9SG12;B5BTY4;Q59GX6;A0A0D9SF53;O00571;A0A024R9A4;O15523;B4DLU5;B4E010;C9J8G5;C9J081;B4E3C4 A0A0D9SFB3 200 208 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2;3 0.008117 95.502 3 2 0.54687 0.74305 95.897 5 Median 0.53831 0.70001 8.4677 3 0 Median 2.5994 3.9462 9.3463 2 0 Median 55510000 31432000 24078000 41348000 27705000 13643000 14163000 3726800 10436000 13878 432 14247 50437;50438;50439;50440;50441 76082;76083;76084;76085;76086;76087 76083 6 YTTPEDATPEPGEDPR AGKSKIEDYFPEFARYTTPEDATPEPGEDP TTPEDATPEPGEDPRVTRAKYFIRDEFLRI R Y T P R V 1 1 0 2 0 0 3 1 0 0 0 0 0 0 4 0 3 0 1 0 0 0 16 0 1773.7693 Q5FWY2;A0A0S2Z3S5;A0A0S2Z3H8;P63092;Q5JWF2;B0AZR9;Q14455;A0A0A0MR13;O60726 Q5FWY2 304 319 GNAS;GSA Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas yes no 2 0.0090962 32.062 1 1 1.4319 1.9937 162.31 2 Median 0.45689 0.63274 NaN 1 0 Median 4.4874 6.2823 NaN 1 0 Median 12216000 5215300 7001100 6263800 3953800 2309900 5952600 1261500 4691200 13879 452 14248 50442;50443 76088;76089;76090 76089 3 YTVPGYR SAILSQADARQVVLKYTVPGYRNSLEFFTM DARQVVLKYTVPGYRNSLEFFTMLAQRRGM K Y T Y R N 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 2 1 0 0 7 0 854.42865 A0A024R2Z6;Q9BVP2 A0A024R2Z6 341 347 GNL3 Guanine nucleotide-binding protein-like 3 yes no 2 0.029096 64.776 2 0.52434 0.77978 2.2317 2 Median NaN NaN NaN 0 0 Median 0.52434 0.77978 2.2317 2 0 Median 31656000 21000000 10656000 0 0 0 31656000 21000000 10656000 13880 95 14249 50444;50445 76091;76092 76092 2 YTVQDESHSEWVSCVR RDKTIKLWNTLGVCKYTVQDESHSEWVSCV TVQDESHSEWVSCVRFSPNSSNPIIVSCGW K Y T V R F 0 1 0 1 1 1 2 0 1 0 0 0 0 0 0 3 1 1 1 3 0 0 16 0 1980.8636 E9KL35;P63244;D6R9Z1;D6R9L0;D6RFX4;J3KPE3;H0Y8W2;H0YAF8;B4DVD2;D6RHH4;H0YAM7;D6RFZ9;D6RBD0 E9KL35 140 155 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 3 0.041943 15.635 1 2.0815 2.8197 NaN 1 Median NaN NaN NaN 0 0 Median 2.0815 2.8197 NaN 1 0 Median 5464400 1576200 3888100 0 0 0 5464400 1576200 3888100 13881 1019 14250 50446 76093 76093 1 YVASAVFGVIGSQK ______________________________ RYVASAVFGVIGSQKGNIVFVTLRGEKGRY R Y V Q K G 2 0 0 0 0 1 0 2 0 1 0 1 0 1 0 2 0 0 1 3 0 0 14 0 1424.7664 Q5TDG3;Q9UNX4;Q6PDA5 Q5TDG3 10 23 WDR3 WD repeat-containing protein 3 yes no 2 1.1607E-32 193.3 4 2 0.80263 1.0279 5.6867 6 Median 0.83699 1.0627 6.9477 4 0 Median 0.66719 1.0167 1.2953 2 0 Median 181090000 102080000 79008000 137420000 75676000 61746000 43665000 26403000 17262000 13882 1576 14251 50447;50448;50449;50450;50451;50452 76094;76095;76096;76097;76098;76099;76100;76101;76102;76103;76104 76097 11 YVASYLLAALGGNSSPSAK ______________________________ YLLAALGGNSSPSAKDIKKILDSVGIEADD R Y V A K D 4 0 1 0 0 0 0 2 0 0 3 1 0 0 1 4 0 0 2 1 0 0 19 0 1867.968 A0A024RCA7;P05387 A0A024RCA7 3 21 RPLP2 60S acidic ribosomal protein P2 yes no 2 2.0148E-62 216.27 4 1 0.89173 1.1148 8.7323 5 Median 0.89761 1.1267 2.7001 4 0 Median 0.59779 0.93374 NaN 1 0 Median 270650000 148110000 122540000 168750000 85926000 82819000 101900000 62186000 39716000 13883 291 14252 50453;50454;50455;50456;50457 76105;76106;76107;76108;76109;76110;76111;76112;76113;76114 76108 10 YVATLGVEVHPLVFHTNR TTFVKRHLTGEFEKKYVATLGVEVHPLVFH TLGVEVHPLVFHTNRGPIKFNVWDTAGQEK K Y V N R G 1 1 1 0 0 0 1 1 2 0 2 0 0 1 1 0 2 0 1 4 0 0 18 0 2051.0952 B5MDF5;P62826;J3KQE5;F5H018;H0YFC6;Q96QB7;Q0EFC9 B5MDF5 39 56 RAN;TC4 GTP-binding nuclear protein Ran yes no 4 0.0014756 59.513 2 2 0.88922 1.2902 62.661 4 Median 0.55714 0.7563 14.764 2 0 Median 1.3893 2.1951 14.389 2 0 Median 195410000 111150000 84262000 126730000 80388000 46339000 68687000 30764000 37923000 13884 901 14253 50458;50459;50460;50461 76115;76116;76117;76118;76119 76117 5 YVDIAIPCNNK NLPTIALCNTDSPLRYVDIAIPCNNKGAHS SPLRYVDIAIPCNNKGAHSVGLMWWMLARE R Y V N K G 1 0 2 1 1 0 0 0 0 2 0 1 0 0 1 0 0 0 1 1 0 0 11 0 1305.6387 C9J9K3;A0A024R2P0;A0A0C4DG17;P08865;A0A024R7P5 C9J9K3 156 166 RPSA;LOC388524 40S ribosomal protein SA yes no 2 1.1397E-06 117.81 4 2 0.84874 1.0843 2.621 5 Median 0.85117 1.0874 1.6044 4 0 Median 0.68245 1.0301 NaN 1 0 Median 268900000 141680000 127220000 255620000 137430000 118200000 13272000 4250800 9021200 13885 90 14254 50462;50463;50464;50465;50466;50467 76120;76121;76122;76123;76124;76125;76126;76127;76128;76129;76130 76125 11 YVDIGVLASDLQR KQRVIQYLTSNKCGKYVDIGVLASDLQRVY GKYVDIGVLASDLQRVYSIDYGRRKRNAFR K Y V Q R V 1 1 0 2 0 1 0 1 0 1 2 0 0 0 0 1 0 0 1 2 0 0 13 0 1447.7671 B4DLM8;O15381;E7EWK7;F8WF01;B4DF43;E9PGD8;A0JLP9;E9PH71 B4DLM8 29 41 NVL Nuclear valosin-containing protein-like yes no 2 1.354E-05 90.685 2 0.66806 0.91292 NaN 1 Median 0.66806 0.91292 NaN 1 0 Median NaN NaN NaN 0 0 Median 3051700 1428700 1623000 3051700 1428700 1623000 0 0 0 13886 827 14255 50468;50469 76131;76132 76132 2 YVECSALTQK PETAEKLARDLKAVKYVECSALTQKGLKNV LKAVKYVECSALTQKGLKNVFDEAILAALE K Y V Q K G 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 1 1 0 1 1 0 0 10 0 1197.57 A0A024RAE4;B7ZAY4;B4DMH5;B4E1U9;P60953 A0A024RAE4 154 163 CDC42 Cell division control protein 42 homolog yes no 2 0.03233 47.603 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13887 241 14256 50470 76133 76133 1 YVELFLNSTAGASGGAYEHR AVAAMSKDKANMQHRYVELFLNSTAGASGG LNSTAGASGGAYEHRYVELFLNSTAGASGG R Y V H R Y 3 1 1 0 0 0 2 3 1 0 2 0 0 1 0 2 1 0 2 1 0 0 20 0 2141.0178 G8JLB6;P31943;H0YB39 G8JLB6 356 375 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 2;3 8.1618E-17 137.69 4 0.30292 0.416 31.445 3 Median 0.30292 0.416 31.445 3 0 Median NaN NaN NaN 0 0 Median 199470000 160250000 39212000 199470000 160250000 39212000 0 0 0 13888 1084 14257 50471;50472;50473;50474 76134;76135;76136;76137 76135 3 YVENPSQVLNCER KPLHLLDCIHVLLIRYVENPSQVLNCERRR IRYVENPSQVLNCERRRFTNLCLDAVCGYL R Y V E R R 0 1 2 0 1 1 2 0 0 0 1 0 0 0 1 1 0 0 1 2 0 0 13 0 1606.741 B4DLT2;A0A024R071;O75694;E9PF10;B3KMK3 B4DLT2 1296 1308 NUP155 Nuclear pore complex protein Nup155 yes no 2 6.6016E-08 141.89 2 0.38813 0.55795 NaN 1 Median 0.38813 0.55795 NaN 1 0 Median NaN NaN NaN 0 0 Median 5600600 4990600 609940 5600600 4990600 609940 0 0 0 13889 29 14258 50475;50476 76138;76139 76138 2 YVEVFK VKLALKKDRETMGHRYVEVFKSNNVEMDWV KDRETMGHRYVEVFKSNNVEMDWVLKHTGP R Y V F K S 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 1 2 0 0 6 0 783.41669 G8JLB6;P31943;E9PCY7;D6RIU0;D6RBM0;D6RAM1;D6R9T0;D6RFM3;D6RIT2;D6RDU3;D6RJ04;D6RIH9;E5RGH4;E7EQJ0;H0YAQ2;H7C2J6;A0A0A6YY98;Q9NQA5;P55795;B4DFK9 G8JLB6 82 87 HNRNPH1;TRPV5;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Transient receptor potential cation channel subfamily V member 5;Heterogeneous nuclear ribonucleoprotein H2 no no 2 0.046493 103.28 1 0.36474 0.46496 NaN 1 Median 0.36474 0.46496 NaN 1 0 Median NaN NaN NaN 0 0 Median 27647000 19809000 7838100 27647000 19809000 7838100 0 0 0 13890 1084;1380 14259 50477 76140 76140 1 YVHLFPK GELIRMPKMGKTIHKYVHLFPKLELSVHLQ KMGKTIHKYVHLFPKLELSVHLQPITRSTL K Y V P K L 0 0 0 0 0 0 0 0 1 0 1 1 0 1 1 0 0 0 1 1 0 0 7 0 902.50142 O75643;A4FU77 O75643 1177 1183 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.019383 85.306 2 1 0.78207 1.0139 45.529 3 Median 0.69332 0.8847 19.272 2 0 Median 1.4207 1.8775 NaN 1 0 Median 17956000 9292800 8662800 15079000 8107900 6971600 2876100 1185000 1691100 13891 1206 14260 50478;50479;50480 76141;76142;76143 76143 3 YVIDYYDGGEVNK DRHDWIINRCGTEVRYVIDYYDGGEVNKDY VRYVIDYYDGGEVNKDYQFTILDVRPALDS R Y V N K D 0 0 1 2 0 0 1 2 0 1 0 1 0 0 0 0 0 0 3 2 0 0 13 0 1533.6987 A0A024RBY9;P53701;Q68D50 A0A024RBY9 224 236 HCCS;DKFZp779I1858 Cytochrome c-type heme lyase yes no 2 0.0011179 62.466 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2318000 2318000 0 2318000 2318000 0 0 0 0 13892 285 14261 50481 76144 76144 1 YVIYIER KGQQIGKVVQVYRKKYVIYIERVQREKANG VVQVYRKKYVIYIERVQREKANGTTVHVGI K Y V E R V 0 1 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 2 1 0 0 7 0 954.51747 Q9UNX3;E5RIT6;J3KS10;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;Q6IBH6;P61254;J3KTJ8 Q9UNX3 78 84 RPL26L1;RPL26 60S ribosomal protein L26-like 1;60S ribosomal protein L26 no no 2 0.025358 100.74 3 2 0.76312 1.0372 37.216 5 Median 0.76316 1.0476 3.8958 3 0 Median 0.33063 0.54142 2.046 2 0 Median 1490200000 885000000 605200000 1267500000 717930000 549610000 222670000 167080000 55591000 13893 1797;1142 14262 50482;50483;50484;50485;50486 76145;76146;76147;76148;76149;76150;76151;76152;76153;76154 76149 10 YVLGYK ESINSRLQLVMKSGKYVLGYKQTLKMIRQG LQLVMKSGKYVLGYKQTLKMIRQGKAKLVI K Y V Y K Q 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 2 1 0 0 6 0 741.40613 E5RI99;A0A024R9D3;P62888;E5RJH3;A0A0C4DH44 E5RI99 27 32 RPL30 60S ribosomal protein L30 yes no 2 0.044875 74.849 1 0.81956 1.0832 NaN 1 Median 0.81956 1.0832 NaN 1 0 Median NaN NaN NaN 0 0 Median 416700000 241150000 175560000 416700000 241150000 175560000 0 0 0 13894 219 14263 50487 76155 76155 1 YVMVVYK DDKTVFHEEFIHYLKYVMVVYKREPAVERV EEFIHYLKYVMVVYKREPAVERVIEFAAKF K Y V Y K R 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 2 3 0 0 7 0 900.47791 Q9BPX3;Q6NUR1;D6RA93 Q9BPX3 54 60 NCAPG Condensin complex subunit 3 yes no 2 0.02225 54.765 1 0.52435 0.71921 NaN 1 Median NaN NaN NaN 0 0 Median 0.52435 0.71921 NaN 1 0 Median 3596700 2360800 1235900 0 0 0 3596700 2360800 1235900 13895 1706 14264 50488 76156 76156 771 1 YVNLEEADNQTLDSYRNEIAYLNK VFQVLNEKKQIYAIKYVNLEEADNQTLDSY QTLDSYRNEIAYLNKLQQHSDKIIRLYDYE K Y V N K L 2 1 4 2 0 1 3 0 0 1 3 1 0 0 0 1 1 0 3 1 0 0 24 1 2874.3672 P33981 P33981 554 577 TTK Dual specificity protein kinase TTK yes yes 3 0.03925 13.682 1 0.69784 0.89978 NaN 1 Median 0.69784 0.89978 NaN 1 0 Median NaN NaN NaN 0 0 Median 4840400 2442200 2398100 4840400 2442200 2398100 0 0 0 13896 1316 14265 50489 76157 76157 1 YVQELAAVR GRQFLEVELDQAREKYVQELAAVRADAETR DQAREKYVQELAAVRADAETRLAEVQREAQ K Y V V R A 2 1 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 1 2 0 0 9 0 1047.5713 A0A024R5M9;A0A087WY61;A0A024R5G4;Q59HB8;Q7Z757;Q96HN5;H0YFY6;K4DIE0;Q4LE64;Q14980 Q4LE64 1476 1484 NUMA1;NUMA1 variant protein Nuclear mitotic apparatus protein 1 no no 2 0.0043069 95.741 3 2 0.68723 0.92535 31.903 4 Median 0.70399 0.95997 9.1205 3 0 Median 0.37349 0.52215 NaN 1 0 Median 36554000 23142000 13412000 24921000 13417000 11505000 11632000 9725300 1907100 13897 148;1499 14266 50490;50491;50492;50493;50494 76158;76159;76160;76161;76162;76163;76164;76165 76163 7 YVSINSTLESCELR IRSSRKVVEHSNPAKYVSINSTLESCELRE KYVSINSTLESCELREIEESLGLEKCSADS K Y V L R E 0 1 1 0 1 0 2 0 0 1 2 0 0 0 0 3 1 0 1 1 0 0 14 0 1669.7981 Q5VWN6 Q5VWN6 823 836 FAM208B Protein FAM208B yes yes 2 0.010016 93.258 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 13898 1579 14267 50495 76166 76166 1 YVSQYYPK RLCEPKEASYSLIRKYVSQYYPKLRVDIRP SYSLIRKYVSQYYPKLRVDIRPQLLKNALQ K Y V P K L 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 1 0 0 3 1 0 0 8 0 1046.5073 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 284 291 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.0049439 93.262 3 2 0.52924 0.76509 7.0743 5 Median 0.64863 0.82731 9.3976 3 0 Plateau 0.4922 0.77911 3.7248 2 0 Median 381760000 252600000 129160000 182810000 116240000 66568000 198950000 136360000 62589000 13899 1565 14268 50496;50497;50498;50499;50500 76167;76168;76169;76170;76171;76172;76173;76174;76175 76173 9 YVTDIQPSEQNESNINK NLCDYGTHNILDLKKYVTDIQPSEQNESNI TDIQPSEQNESNINKLRKKVNRKTEIISGM K Y V N K L 0 0 3 1 0 2 2 0 0 2 0 1 0 0 1 2 1 0 1 1 0 0 17 0 1977.928 Q562F6;B7Z7S9 Q562F6 595 611 SGOL2 Shugoshin-like 2 yes no 2 0.00047271 49.423 2 1 0.86199 1.183 17.195 3 Plateau 0.80324 1.0172 0.59184 2 0 Median 0.92393 1.37 NaN 1 0 Median 30296000 14828000 15468000 19674000 9860700 9813500 10622000 4967000 5654700 13900 1546 14269 50501;50502;50503 76176;76177;76178;76179;76180 76180 5 YVVVTGITPTPLGEGK LLSALERLKHRPDGKYVVVTGITPTPLGEG VVVTGITPTPLGEGKSTTTIGLVQALGAHL K Y V G K S 0 0 0 0 0 0 1 3 0 1 1 1 0 0 2 0 3 0 1 3 0 0 16 0 1629.8978 A0A024R652;F5H2F4;B7Z809;P11586 A0A024R652 371 386 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 2.9694E-18 159.44 5 2 0.56985 0.72974 32.398 4 Median 0.56985 0.72974 32.398 4 0 Median NaN NaN NaN 0 0 Median 46875000 26687000 20188000 38004000 26687000 11316000 8871800 0 8871800 13901 154 14270 50504;50505;50506;50507;50508;50509;50510 76181;76182;76183;76184;76185;76186;76187;76188;76189;76190 76182 10 YYALCGFGGVLSCGLTHTAVVPLDLVK AAAVEEYSCEFGSAKYYALCGFGGVLSCGL CGLTHTAVVPLDLVKCRMQVDPQKYKGIFN K Y Y V K C 2 0 0 1 2 0 0 4 1 0 5 1 0 1 1 1 2 0 2 4 0 0 27 0 2909.482 F8VVM2;Q8NCF7;Q53HC3;B2RE88;A0A024RBE8;F8VWQ0 F8VVM2 63 89 SLC25A3 yes no 3 0.00072673 49.902 1 0.70631 0.91979 NaN 1 Median 0.70631 0.91979 NaN 1 0 Median NaN NaN NaN 0 0 Median 2184500 1055700 1128900 2184500 1055700 1128900 0 0 0 13902 271 14271 50511 76191 76191 1 YYAVNFPMRDGIDDESYGQIFKPIISK PGTGDLRDIGAGKGKYYAVNFPMRDGIDDE DDESYGQIFKPIISKVMEMYQPSAVVLQCG K Y Y S K V 1 1 1 3 0 1 1 2 0 4 0 2 1 2 2 2 0 0 3 1 0 0 27 2 3165.5481 Q92769;B3KUJ5 Q92769 222 248 HDAC2 Histone deacetylase 2;Histone deacetylase yes no 4 1.0395E-06 46.404 1 0.83877 1.5092 NaN 1 Median NaN NaN NaN 0 0 Median 0.83877 1.5092 NaN 1 0 Median 45751000 21814000 23937000 0 0 0 45751000 21814000 23937000 13903 1675 14272 50512 76192 76192 756 1 YYAVNYPLR PGTGDLRDIGAGKGKYYAVNYPLRDGIDDE GAGKGKYYAVNYPLRDGIDDESYEAIFKPV K Y Y L R D 1 1 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 3 1 0 0 9 0 1157.5869 Q6IT96;B5BU61;Q13547;Q5TEE2;B4DRG0 Q6IT96 221 229 HDAC1 Histone deacetylase;Histone deacetylase 1 yes no 2 0.0065677 68.915 2 0.96909 1.3954 13.602 2 Median NaN NaN NaN 0 0 Median 0.96909 1.3954 13.602 2 0 Median 12987000 6586700 6399800 0 0 0 12987000 6586700 6399800 13904 894 14273 50513;50514 76193;76194;76195;76196 76196 4 YYAVNYPLRDGIDDESYEAIFK PGTGDLRDIGAGKGKYYAVNYPLRDGIDDE LRDGIDDESYEAIFKPVMSKVMEMFQPSAV K Y Y F K P 2 1 1 3 0 0 2 1 0 2 1 1 0 1 1 1 0 0 4 1 0 0 22 1 2640.2384 Q6IT96;B5BU61;Q13547;B4DRG0 Q6IT96 221 242 HDAC1 Histone deacetylase;Histone deacetylase 1 yes no 3 0.0058461 36.111 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7061700 7061700 0 7061700 7061700 0 0 0 0 13905 894 14274 50515 76197 76197 1 YYEAADTVTQFDNVR EKMAVRKKDGGPNVKYYEAADTVTQFDNVR YYEAADTVTQFDNVRLWLGKNYKKYIQAEP K Y Y V R L 2 1 1 2 0 1 1 0 0 0 0 0 0 1 0 0 2 0 2 2 0 0 15 0 1790.8111 Q59G16;A0A024RB22;F8VXC8;Q8TAQ2;Q658P9;F8VZW6 Q59G16 19 33 SMARCC2;DKFZp313D0632 SWI/SNF complex subunit SMARCC2 yes no 2 7.5209E-23 144.65 4 1 0.75837 1.0426 18.378 4 Median 0.71472 0.96567 9.15 3 0 Median 1.0666 1.4171 NaN 1 0 Median 23198000 14039000 9159500 18457000 11694000 6762400 4741700 2344600 2397200 13906 257 14275 50516;50517;50518;50519;50520 76198;76199;76200;76201;76202;76203;76204;76205 76203 8 YYGLQILENVIK RVDTILEFSQNMNTKYYGLQILENVIKTRW NTKYYGLQILENVIKTRWKILPRNQCEGIK K Y Y I K T 0 0 1 0 0 1 1 1 0 2 2 1 0 0 0 0 0 0 2 1 0 0 12 0 1451.8024 O14980;C9IZS4;C9JQ02;C9JV99;C9J673;C9JKM9;H7BZC5 O14980 77 88 XPO1 Exportin-1 yes no 2 1.2288E-15 167.12 5 0.51165 0.64258 20.752 3 Plateau 0.51165 0.64258 20.752 3 0 Plateau NaN NaN NaN 0 0 Median 10763000 6943900 3819500 10763000 6943900 3819500 0 0 0 13907 1174 14276 50521;50522;50523;50524;50525 76206;76207;76208;76209;76210;76211 76206 6 YYGQNGQQILSASQDGTLQSFSTVHEK LRFRMGHSAPLTNIRYYGQNGQQILSASQD SQDGTLQSFSTVHEKFNKSLGHGLINKKRV R Y Y E K F 1 0 1 1 0 5 1 3 1 1 2 1 0 1 0 4 2 0 2 1 0 0 27 0 2985.4104 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 331 357 WDR36 WD repeat-containing protein 36 yes no 3 4.9121E-47 124.51 3 1 0.69482 0.95833 19.571 4 Median 0.82024 1.0073 23.736 3 0 Median 0.58857 0.91176 NaN 1 0 Median 70667000 39984000 30683000 40110000 20874000 19236000 30557000 19110000 11447000 13908 404 14277 50526;50527;50528;50529 76212;76213;76214;76215 76214 4 YYLHDDREGEGSDK REEEWDPEYTPKSKKYYLHDDREGEGSDKW KYYLHDDREGEGSDKWVSRGRGRGAFPRGR K Y Y D K W 0 1 0 3 0 0 2 2 1 0 1 1 0 0 0 1 0 0 2 0 0 0 14 1 1682.7172 Q9Y2W1 Q9Y2W1 880 893 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 3 0.0002374 96.23 1 0.65634 0.89008 NaN 1 Median 0.65634 0.89008 NaN 1 0 Median NaN NaN NaN 0 0 Median 6644700 3892900 2751800 6644700 3892900 2751800 0 0 0 13909 1809 14278 50530 76216 76216 1 YYLIQLLEDDAQR DVMLNQTNLQFNNNKYYLIQLLEDDAQRNF NKYYLIQLLEDDAQRNFSVWMRWGRVGKMG K Y Y Q R N 1 1 0 2 0 2 1 0 0 1 3 0 0 0 0 0 0 0 2 0 0 0 13 0 1638.8253 B4DV82;G3V167;A8K214;Q9UGN5 B4DV82 118 130 PARP2 Poly [ADP-ribose] polymerase 2 yes no 2 6.8181E-12 150.1 5 0.90185 1.2298 10.821 2 Median 0.90185 1.2298 10.821 2 0 Median NaN NaN NaN 0 0 Median 32512000 12323000 20189000 32512000 12323000 20189000 0 0 0 13910 581 14279 50531;50532;50533;50534;50535 76217;76218;76219;76220;76221 76221 5 YYLVQGLVEECQAALQNK PESRREIEELLAEAKYYLVQGLVEECQAAL VQGLVEECQAALQNKDTYEPFCKVPVITSS K Y Y N K D 2 0 1 0 1 3 2 1 0 0 3 1 0 0 0 0 0 0 2 2 0 0 18 0 2125.0514 F5GWA4;A0A024RBJ2;Q9H3F6 F5GWA4 111 128 KCTD10 BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 yes no 2 0.0025278 84.718 3 1.9018 2.4346 NaN 1 Median 1.9018 2.4346 NaN 1 0 Median NaN NaN NaN 0 0 Median 6824700 1456600 5368100 6824700 1456600 5368100 0 0 0 13911 275 14280 50536;50537;50538 76222;76223;76224 76224 3 YYPTEDVPR KNGGTRVVKLRKMPRYYPTEDVPRKLLSHG LRKMPRYYPTEDVPRKLLSHGKKPFSQHVR R Y Y P R K 0 1 0 1 0 0 1 0 0 0 0 0 0 0 2 0 1 0 2 1 0 0 9 0 1138.5295 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;F8VZ45;U3KQR5;F8VR69 Q8TBK5 115 123 RPL6 60S ribosomal protein L6 yes no 2 0.00011689 125.81 4 2 0.69316 0.97597 2.7991 5 Median 0.71227 0.97597 3.352 3 0 Median 0.60591 0.98889 2.5907 2 0 Median 633990000 342510000 291480000 461590000 237580000 224010000 172410000 104930000 67473000 13912 277 14281 50539;50540;50541;50542;50543;50544 76225;76226;76227;76228;76229;76230;76231;76232 76226 8 YYPTEDVPRK KNGGTRVVKLRKMPRYYPTEDVPRKLLSHG RKMPRYYPTEDVPRKLLSHGKKPFSQHVRK R Y Y R K L 0 1 0 1 0 0 1 0 0 0 0 1 0 0 2 0 1 0 2 1 0 0 10 1 1266.6245 Q8TBK5;Q8N5Z7;A0A024RBK3;Q9HBB3;Q02878;B2R4K7;F8VZ45;U3KQR5;F8VR69 Q8TBK5 115 124 RPL6 60S ribosomal protein L6 yes no 2;3 0.00011405 95.099 8 4 0.77767 1.0312 11.913 12 Median 0.83035 1.0989 10.707 8 0 Median 0.5395 0.91015 6.0399 4 0 Median 1401900000 768960000 632960000 1297800000 703330000 594440000 104160000 65639000 38522000 13913 277 14282 50545;50546;50547;50548;50549;50550;50551;50552;50553;50554;50555;50556 76233;76234;76235;76236;76237;76238;76239;76240;76241;76242;76243;76244;76245;76246;76247;76248;76249;76250;76251 76240 19 YYTLFGR LQPGAKCVCGKNPAKYYTLFGRSY______ VCGKNPAKYYTLFGRSY_____________ K Y Y G R S 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 1 0 2 0 0 0 7 0 918.45995 P07814;B4DP50 P07814 1504 1510 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.024586 102.98 2 0.51861 0.69897 24.767 2 Median 0.51861 0.69897 24.767 2 0 Median NaN NaN NaN 0 0 Median 12669000 8139700 4529300 12669000 8139700 4529300 0 0 0 13914 1242 14283 50557;50558 76252;76253 76252 2 YYVTIIDAPGHR GITIDISLWKFETSKYYVTIIDAPGHRDFI TSKYYVTIIDAPGHRDFIKNMITGTSQADC K Y Y H R D 1 1 0 1 0 0 0 1 1 2 0 0 0 0 1 0 1 0 2 1 0 0 12 0 1403.7197 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;P68104;A8K9C4;Q5VTE0;Q96RE1;A0A087WVQ9;Q53GE9;Q53GA1;Q53G85;B4DV42;B4DNE0;Q9NZS6;A0A087WV01;Q9H2I7;Q16577;A9X7H1;A6PW80;Q5JR01 Q6IPT9 85 96 EEF1A1;EEF1A1P5;EEF1A1L14;PTI-1 Elongation factor 1-alpha;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 2;3 6.6827E-13 166.07 7 4 0.38479 0.53355 125.36 11 Median 0.3775 0.51344 6.6067 7 0 Median 3.7046 6.0225 2.0539 4 0 Median 3207600000 2094000000 1113600000 2738200000 1997300000 740880000 469440000 96712000 372730000 13915 1421 14284 50559;50560;50561;50562;50563;50564;50565;50566;50567;50568;50569 76254;76255;76256;76257;76258;76259;76260;76261;76262;76263;76264;76265;76266;76267;76268;76269;76270;76271;76272;76273;76274;76275 76256 22 YYVTIIDAPGHRDFIK GITIDISLWKFETSKYYVTIIDAPGHRDFI YVTIIDAPGHRDFIKNMITGTSQADCAVLI K Y Y I K N 1 1 0 2 0 0 0 1 1 3 0 1 0 1 1 0 1 0 2 1 0 0 16 1 1906.9941 Q6IPT9;Q6IPS9;Q6IPN6;Q53HR5;Q53HQ7;Q53HM9;P68104;A8K9C4;Q5VTE0;Q96RE1;A0A087WVQ9;Q53GE9;Q53GA1;Q53G85;B4DV42;B4DNE0;Q9NZS6;A0A087WV01;Q9H2I7;A9X7H1;A6PW80;Q5JR01 Q6IPT9 85 100 EEF1A1;EEF1A1P5;EEF1A1L14 Elongation factor 1-alpha;Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 3 8.276E-05 97.223 3 1 0.37704 0.49814 133.43 4 Median 0.39185 0.51678 10.581 3 0 Plateau 4.4314 6.843 NaN 1 0 Median 115940000 75804000 40131000 106600000 74266000 32337000 9332900 1538200 7794700 13916 1421 14285 50570;50571;50572;50573 76276;76277;76278;76279;76280;76281;76282 76278 6 YYYAVVDCDSPETASK TSREKLRDYQFKRLKYYYAVVDCDSPETAS YYAVVDCDSPETASKIYEDCDGLEFESSCS K Y Y S K I 2 0 0 2 1 0 1 0 0 0 0 1 0 0 1 2 1 0 3 2 0 0 16 0 1866.7982 Q9H501;Q05C10;A0JLU5;A0A087WX71 Q9H501 433 448 ESF1 ESF1 homolog yes no 2 2.9299E-13 145.14 4 1 0.81879 1.0452 19.941 4 Median 0.95506 1.2182 19.49 3 0 Median 0.66496 0.88105 NaN 1 0 Median 13792000 6567100 7225200 10823000 5024800 5798600 2968800 1542300 1426500 13917 1734 14286 50574;50575;50576;50577;50578 76283;76284;76285;76286;76287;76288;76289;76290;76291 76287 9