<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<jPostDataset id="JPST000333" formatVersion="1.0">
  <Project id="JPST000333" pxid="PXD007908" createdDate="2017-10-09" modifiedDate="2019-01-12" mode="partial" jpostRevision="0" type="Mass spectrometry" announced="true">
    <Title>AtPhot2, Autophosphorylation, Gel</Title>
    <Description>Recombinant Arabidopsis phototropin2 (Phot2) protein or kinase-dead derivative (Phot2-DN) were incubated with ATP under different conditions. Proteins were separated by SDS-PAGE, in-gel tryptic digested, analyzed by LC-MS. </Description>
    <AnnouncementDate>2018-10-09</AnnouncementDate>
    <Note/>
  </Project>
  <presetSummary>
    <Species>
      <PresetElement id="3702" value="Arabidopsis thaliana (Mouse-ear cress)"/>
    </Species>
    <Instrument>
      <PresetElement id="MS:1000449" value="LTQ Orbitrap"/>
    </Instrument>
    <Modification>
      <PresetElement id="MOD:01061" ontologyName="S-carboxymethyl-L-cysteine" value="Carboxymethyl (C)"/>
      <PresetElement id="MOD:00046" ontologyName="O-phospho-L-serine" value="Phospho (S)"/>
      <PresetElement id="MOD:00047" ontologyName="O-phospho-L-threonine" value="Phospho (T)"/>
      <PresetElement id="MOD:00048" ontologyName="O4'-phospho-L-tyrosine" value="Phospho (Y)"/>
      <PresetElement id="MOD:00719" ontologyName="L-methionine sulfoxide" value="Oxidation (M)"/>
    </Modification>
  </presetSummary>
  <Contact>
    <Name>Hirofumi Nakagami</Name>
    <Affiliation>Max Planck Institute for Plant Breeding Research</Affiliation>
    <PrincipalInvestigator>Hirofumi Nakagami</PrincipalInvestigator>
  </Contact>
  <Relation>
    <Keywords>Arabidopsis, phototropin2, phosphorylation</Keywords>
    <PubMed>
      <PubMedId>29196607</PubMedId>
      <PubMedInfo>Oide M, Okajima K, Nakagami H, Kato T, Sekiguchi Y, Oroguchi T, Hikima T, Yamamoto M, Nakasako M Blue light-excited LOV1 and LOV2 domains cooperatively regulate the kinase activity of full-length phototropin2 from &#60;i&#62;Arabidopsis&#60;/i&#62;. J Biol Chem. 2018 Jan 19;293(3):963-972</PubMedInfo>
    </PubMed>
  </Relation>
  <FileList>
    <File id="f_0000506135">
      <Name>Phot2_WT.raw</Name>
      <Type>raw</Type>
      <Size>46359088</Size>
      <Profile>
        <Sample id="S0000000760">
          <title>Arabidopsis, Recombinant protein</title>
          <species id="3702">Arabidopsis thaliana (Mouse-ear cress)</species>
          <tissue id="PRIDE:0000442">Tissue not applicable to dataset</tissue>
          <celltype/>
          <disease/>
          <note/>
        </Sample>
        <Fractionation id="F0000000169">
          <title>Gel slice</title>
          <subcellular/>
          <protein/>
          <peptide/>
          <note/>
        </Fractionation>
        <Enzyme_Mod id="E0000000166">
          <title>Arabidopsis, Trypsin, Phospho</title>
          <enzyme id="MS:1001251">Trypsin</enzyme>
          <fixedModification id="MOD:01061" name="S-carboxymethyl-L-cysteine">Carboxymethyl (C)</fixedModification>
          <variableModification id="MOD:00046" name="O-phospho-L-serine">Phospho (S)</variableModification>
          <taxonomy id="3702">Arabidopsis thaliana (Mouse-ear cress)</taxonomy>
          <note/>
          <variableModification id="MOD:00047" name="O-phospho-L-threonine">Phospho (T)</variableModification>
          <variableModification id="MOD:00048" name="O4'-phospho-L-tyrosine">Phospho (Y)</variableModification>
          <variableModification id="MOD:00719" name="L-methionine sulfoxide">Oxidation (M)</variableModification>
        </Enzyme_Mod>
        <MS_mode id="M0000000166">
          <title>LTQ-Orbitrap XL</title>
          <instrument id="MS:1000449">LTQ Orbitrap</instrument>
          <instrumentMode>DDA-high res.</instrumentMode>
          <purpose>Qualification</purpose>
          <quantificationPlatform/>
          <plex>-</plex>
          <note/>
        </MS_mode>
      </Profile>
    </File>
    <File id="f_0000506136">
      <Name>Phot2_DN.raw</Name>
      <Type>raw</Type>
      <Size>46454812</Size>
      <Profile>
        <Sample id="S0000000760">
          <title>Arabidopsis, Recombinant protein</title>
          <species id="3702">Arabidopsis thaliana (Mouse-ear cress)</species>
          <tissue id="PRIDE:0000442">Tissue not applicable to dataset</tissue>
          <celltype/>
          <disease/>
          <note/>
        </Sample>
        <Fractionation id="F0000000169">
          <title>Gel slice</title>
          <subcellular/>
          <protein/>
          <peptide/>
          <note/>
        </Fractionation>
        <Enzyme_Mod id="E0000000166">
          <title>Arabidopsis, Trypsin, Phospho</title>
          <enzyme id="MS:1001251">Trypsin</enzyme>
          <fixedModification id="MOD:01061" name="S-carboxymethyl-L-cysteine">Carboxymethyl (C)</fixedModification>
          <variableModification id="MOD:00046" name="O-phospho-L-serine">Phospho (S)</variableModification>
          <taxonomy id="3702">Arabidopsis thaliana (Mouse-ear cress)</taxonomy>
          <note/>
          <variableModification id="MOD:00047" name="O-phospho-L-threonine">Phospho (T)</variableModification>
          <variableModification id="MOD:00048" name="O4'-phospho-L-tyrosine">Phospho (Y)</variableModification>
          <variableModification id="MOD:00719" name="L-methionine sulfoxide">Oxidation (M)</variableModification>
        </Enzyme_Mod>
        <MS_mode id="M0000000166">
          <title>LTQ-Orbitrap XL</title>
          <instrument id="MS:1000449">LTQ Orbitrap</instrument>
          <instrumentMode>DDA-high res.</instrumentMode>
          <purpose>Qualification</purpose>
          <quantificationPlatform/>
          <plex>-</plex>
          <note/>
        </MS_mode>
      </Profile>
    </File>
    <File id="f_0000506137">
      <Name>AtPHOT2_PP.raw</Name>
      <Type>raw</Type>
      <Size>43757242</Size>
      <Profile>
        <Sample id="S0000000760">
          <title>Arabidopsis, Recombinant protein</title>
          <species id="3702">Arabidopsis thaliana (Mouse-ear cress)</species>
          <tissue id="PRIDE:0000442">Tissue not applicable to dataset</tissue>
          <celltype/>
          <disease/>
          <note/>
        </Sample>
        <Fractionation id="F0000000169">
          <title>Gel slice</title>
          <subcellular/>
          <protein/>
          <peptide/>
          <note/>
        </Fractionation>
        <Enzyme_Mod id="E0000000166">
          <title>Arabidopsis, Trypsin, Phospho</title>
          <enzyme id="MS:1001251">Trypsin</enzyme>
          <fixedModification id="MOD:01061" name="S-carboxymethyl-L-cysteine">Carboxymethyl (C)</fixedModification>
          <variableModification id="MOD:00046" name="O-phospho-L-serine">Phospho (S)</variableModification>
          <taxonomy id="3702">Arabidopsis thaliana (Mouse-ear cress)</taxonomy>
          <note/>
          <variableModification id="MOD:00047" name="O-phospho-L-threonine">Phospho (T)</variableModification>
          <variableModification id="MOD:00048" name="O4'-phospho-L-tyrosine">Phospho (Y)</variableModification>
          <variableModification id="MOD:00719" name="L-methionine sulfoxide">Oxidation (M)</variableModification>
        </Enzyme_Mod>
        <MS_mode id="M0000000166">
          <title>LTQ-Orbitrap XL</title>
          <instrument id="MS:1000449">LTQ Orbitrap</instrument>
          <instrumentMode>DDA-high res.</instrumentMode>
          <purpose>Qualification</purpose>
          <quantificationPlatform/>
          <plex>-</plex>
          <note/>
        </MS_mode>
      </Profile>
    </File>
    <File id="f_0000506138">
      <Name>AtPHOT2_Dark_1h.raw</Name>
      <Type>raw</Type>
      <Size>43839920</Size>
      <Profile>
        <Sample id="S0000000760">
          <title>Arabidopsis, Recombinant protein</title>
          <species id="3702">Arabidopsis thaliana (Mouse-ear cress)</species>
          <tissue id="PRIDE:0000442">Tissue not applicable to dataset</tissue>
          <celltype/>
          <disease/>
          <note/>
        </Sample>
        <Fractionation id="F0000000169">
          <title>Gel slice</title>
          <subcellular/>
          <protein/>
          <peptide/>
          <note/>
        </Fractionation>
        <Enzyme_Mod id="E0000000166">
          <title>Arabidopsis, Trypsin, Phospho</title>
          <enzyme id="MS:1001251">Trypsin</enzyme>
          <fixedModification id="MOD:01061" name="S-carboxymethyl-L-cysteine">Carboxymethyl (C)</fixedModification>
          <variableModification id="MOD:00046" name="O-phospho-L-serine">Phospho (S)</variableModification>
          <taxonomy id="3702">Arabidopsis thaliana (Mouse-ear cress)</taxonomy>
          <note/>
          <variableModification id="MOD:00047" name="O-phospho-L-threonine">Phospho (T)</variableModification>
          <variableModification id="MOD:00048" name="O4'-phospho-L-tyrosine">Phospho (Y)</variableModification>
          <variableModification id="MOD:00719" name="L-methionine sulfoxide">Oxidation (M)</variableModification>
        </Enzyme_Mod>
        <MS_mode id="M0000000166">
          <title>LTQ-Orbitrap XL</title>
          <instrument id="MS:1000449">LTQ Orbitrap</instrument>
          <instrumentMode>DDA-high res.</instrumentMode>
          <purpose>Qualification</purpose>
          <quantificationPlatform/>
          <plex>-</plex>
          <note/>
        </MS_mode>
      </Profile>
    </File>
    <File id="f_0000506139">
      <Name>AtPHOT2_BL_1h.raw</Name>
      <Type>raw</Type>
      <Size>43731160</Size>
      <Profile>
        <Sample id="S0000000760">
          <title>Arabidopsis, Recombinant protein</title>
          <species id="3702">Arabidopsis thaliana (Mouse-ear cress)</species>
          <tissue id="PRIDE:0000442">Tissue not applicable to dataset</tissue>
          <celltype/>
          <disease/>
          <note/>
        </Sample>
        <Fractionation id="F0000000169">
          <title>Gel slice</title>
          <subcellular/>
          <protein/>
          <peptide/>
          <note/>
        </Fractionation>
        <Enzyme_Mod id="E0000000166">
          <title>Arabidopsis, Trypsin, Phospho</title>
          <enzyme id="MS:1001251">Trypsin</enzyme>
          <fixedModification id="MOD:01061" name="S-carboxymethyl-L-cysteine">Carboxymethyl (C)</fixedModification>
          <variableModification id="MOD:00046" name="O-phospho-L-serine">Phospho (S)</variableModification>
          <taxonomy id="3702">Arabidopsis thaliana (Mouse-ear cress)</taxonomy>
          <note/>
          <variableModification id="MOD:00047" name="O-phospho-L-threonine">Phospho (T)</variableModification>
          <variableModification id="MOD:00048" name="O4'-phospho-L-tyrosine">Phospho (Y)</variableModification>
          <variableModification id="MOD:00719" name="L-methionine sulfoxide">Oxidation (M)</variableModification>
        </Enzyme_Mod>
        <MS_mode id="M0000000166">
          <title>LTQ-Orbitrap XL</title>
          <instrument id="MS:1000449">LTQ Orbitrap</instrument>
          <instrumentMode>DDA-high res.</instrumentMode>
          <purpose>Qualification</purpose>
          <quantificationPlatform/>
          <plex>-</plex>
          <note/>
        </MS_mode>
      </Profile>
    </File>
    <File id="f_0000506141">
      <Name>F022140.dat</Name>
      <Type>result</Type>
      <Size>13140636</Size>
      <Profile/>
      <Format/>
      <Software>Mascot</Software>
    </File>
    <File id="f_0000506142">
      <Name>F022138.dat</Name>
      <Type>result</Type>
      <Size>13679564</Size>
      <Profile/>
      <Format/>
      <Software>Mascot</Software>
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  <AdditionalInformation/>
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